Query psy4053
Match_columns 74
No_of_seqs 86 out of 88
Neff 3.9
Searched_HMMs 46136
Date Sat Aug 17 00:09:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4053.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4053hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK07588 hypothetical protein; 96.5 0.0065 1.4E-07 44.9 5.5 47 11-68 115-161 (391)
2 PF01494 FAD_binding_3: FAD bi 96.3 0.00057 1.2E-08 47.7 -1.2 57 4-67 117-174 (356)
3 PRK07364 2-octaprenyl-6-methox 96.3 0.0097 2.1E-07 44.0 5.0 48 12-67 136-183 (415)
4 PRK06183 mhpA 3-(3-hydroxyphen 96.1 0.011 2.3E-07 46.3 4.8 50 11-67 127-176 (538)
5 TIGR01989 COQ6 Ubiquinone bios 95.9 0.021 4.6E-07 43.5 5.6 52 12-67 134-185 (437)
6 PRK05868 hypothetical protein; 95.8 0.021 4.6E-07 42.7 5.1 49 8-67 114-162 (372)
7 PRK06475 salicylate hydroxylas 95.8 0.018 3.9E-07 43.0 4.6 49 11-67 121-169 (400)
8 TIGR01984 UbiH 2-polyprenyl-6- 95.7 0.024 5.3E-07 41.3 4.8 45 12-67 120-164 (382)
9 PRK08243 4-hydroxybenzoate 3-m 95.5 0.007 1.5E-07 45.0 1.4 57 4-67 109-165 (392)
10 PRK11445 putative oxidoreducta 95.4 0.026 5.6E-07 41.8 4.1 49 11-67 111-159 (351)
11 PRK06617 2-octaprenyl-6-methox 95.3 0.032 6.9E-07 41.4 4.5 44 12-67 119-162 (374)
12 PRK08244 hypothetical protein; 95.2 0.01 2.2E-07 45.6 1.7 55 5-67 107-161 (493)
13 PRK08013 oxidoreductase; Provi 95.1 0.047 1E-06 40.9 4.9 45 12-67 126-170 (400)
14 PRK08020 ubiF 2-octaprenyl-3-m 95.1 0.047 1E-06 40.1 4.7 45 12-67 127-171 (391)
15 PRK08849 2-octaprenyl-3-methyl 95.1 0.051 1.1E-06 40.4 4.9 46 11-67 124-169 (384)
16 PRK09126 hypothetical protein; 95.1 0.048 1E-06 40.0 4.7 46 11-67 124-169 (392)
17 TIGR01988 Ubi-OHases Ubiquinon 94.9 0.019 4.2E-07 41.4 2.3 49 8-67 116-165 (385)
18 PRK05714 2-octaprenyl-3-methyl 94.9 0.053 1.1E-06 40.3 4.5 46 11-67 125-170 (405)
19 PRK07045 putative monooxygenas 94.9 0.047 1E-06 40.3 4.2 50 9-67 118-167 (388)
20 PRK06126 hypothetical protein; 94.6 0.059 1.3E-06 42.0 4.3 50 11-67 140-190 (545)
21 PRK07236 hypothetical protein; 94.6 0.076 1.6E-06 39.4 4.8 46 11-67 111-156 (386)
22 PRK06847 hypothetical protein; 94.5 0.085 1.8E-06 38.4 4.8 47 10-67 119-165 (375)
23 PRK08850 2-octaprenyl-6-methox 94.1 0.11 2.4E-06 38.7 4.9 46 11-67 125-170 (405)
24 PRK08132 FAD-dependent oxidore 94.0 0.11 2.4E-06 40.7 4.8 48 12-67 140-187 (547)
25 PRK05732 2-octaprenyl-6-methox 93.9 0.12 2.6E-06 37.7 4.6 46 11-67 126-171 (395)
26 TIGR02028 ChlP geranylgeranyl 93.9 0.052 1.1E-06 41.1 2.7 56 7-67 102-162 (398)
27 PLN00093 geranylgeranyl diphos 93.9 0.039 8.4E-07 43.2 2.1 57 6-67 140-201 (450)
28 TIGR02360 pbenz_hydroxyl 4-hyd 93.9 0.024 5.1E-07 42.6 0.8 57 4-67 109-165 (390)
29 PRK06996 hypothetical protein; 93.7 0.16 3.6E-06 37.9 5.1 46 11-64 128-173 (398)
30 PRK06184 hypothetical protein; 93.5 0.036 7.9E-07 42.8 1.4 50 10-67 121-170 (502)
31 PRK08163 salicylate hydroxylas 93.5 0.15 3.3E-06 37.4 4.5 45 12-67 124-168 (396)
32 TIGR03219 salicylate_mono sali 93.0 0.19 4.1E-06 37.6 4.5 44 12-66 117-160 (414)
33 PRK06834 hypothetical protein; 92.8 0.22 4.7E-06 39.2 4.7 46 11-67 113-158 (488)
34 PRK06753 hypothetical protein; 92.8 0.2 4.3E-06 36.5 4.1 45 12-67 110-154 (373)
35 PRK07333 2-octaprenyl-6-methox 92.7 0.23 5E-06 36.5 4.5 47 10-67 123-169 (403)
36 COG0654 UbiH 2-polyprenyl-6-me 92.6 0.2 4.4E-06 37.5 4.2 45 13-67 120-164 (387)
37 PRK07538 hypothetical protein; 92.5 0.29 6.3E-06 36.7 4.8 50 11-67 116-167 (413)
38 PRK07190 hypothetical protein; 92.5 0.2 4.3E-06 39.5 4.1 47 10-67 121-167 (487)
39 TIGR02023 BchP-ChlP geranylger 92.0 0.31 6.8E-06 36.3 4.4 51 9-67 103-157 (388)
40 PRK08294 phenol 2-monooxygenas 91.9 0.33 7.2E-06 39.7 4.9 51 13-67 158-212 (634)
41 PRK08773 2-octaprenyl-3-methyl 91.6 0.37 7.9E-06 35.7 4.4 46 11-67 126-171 (392)
42 PRK07608 ubiquinone biosynthes 89.7 0.28 6.1E-06 35.8 2.4 46 10-67 123-169 (388)
43 PRK07494 2-octaprenyl-6-methox 88.9 1.1 2.3E-05 33.0 4.9 44 12-67 126-169 (388)
44 PF03074 GCS: Glutamate-cystei 88.0 0.23 5.1E-06 39.6 1.0 26 25-53 180-205 (371)
45 TIGR02032 GG-red-SF geranylger 85.1 0.54 1.2E-05 32.3 1.5 52 6-67 99-150 (295)
46 PRK06185 hypothetical protein; 84.8 2 4.4E-05 31.7 4.5 50 11-67 122-171 (407)
47 KOG3754|consensus 83.6 0.6 1.3E-05 39.3 1.4 26 25-53 415-440 (640)
48 PRK08255 salicylyl-CoA 5-hydro 79.8 0.27 5.9E-06 40.9 -1.9 41 4-67 103-143 (765)
49 PTZ00367 squalene epoxidase; P 78.8 4.4 9.6E-05 33.1 4.8 18 50-67 204-221 (567)
50 PRK10157 putative oxidoreducta 77.7 1 2.2E-05 34.6 0.8 51 6-67 116-166 (428)
51 PF13738 Pyr_redox_3: Pyridine 76.4 2.3 4.9E-05 28.1 2.1 45 12-67 96-140 (203)
52 PLN02927 antheraxanthin epoxid 73.6 6 0.00013 33.4 4.4 42 15-67 209-250 (668)
53 COG0644 FixC Dehydrogenases (f 69.6 6.2 0.00013 29.8 3.3 49 9-67 106-154 (396)
54 PLN02985 squalene monooxygenas 65.3 10 0.00022 30.3 3.9 49 12-67 162-210 (514)
55 COG4308 LimA Limonene-1,2-epox 64.8 5.1 0.00011 28.1 1.9 28 37-64 51-79 (130)
56 PRK11259 solA N-methyltryptoph 60.6 7.2 0.00016 28.3 2.1 45 8-64 159-203 (376)
57 PRK04176 ribulose-1,5-biphosph 60.4 5 0.00011 29.2 1.2 60 4-66 110-174 (257)
58 PF08848 DUF1818: Domain of un 60.0 6.1 0.00013 27.1 1.6 23 35-62 4-26 (117)
59 PRK10015 oxidoreductase; Provi 59.0 14 0.00031 28.5 3.6 49 8-67 118-166 (429)
60 PLN02463 lycopene beta cyclase 58.3 25 0.00054 27.8 4.9 46 11-68 127-172 (447)
61 KOG1700|consensus 57.3 1.3 2.9E-05 31.8 -2.2 60 4-72 17-79 (200)
62 TIGR01292 TRX_reduct thioredox 55.4 41 0.00089 23.2 5.1 48 11-70 70-117 (300)
63 PF03486 HI0933_like: HI0933-l 51.9 16 0.00035 28.7 2.9 50 8-67 119-168 (409)
64 TIGR01813 flavo_cyto_c flavocy 48.9 12 0.00026 28.3 1.7 57 5-66 137-193 (439)
65 PLN02172 flavin-containing mon 48.4 34 0.00074 27.1 4.2 48 11-65 124-173 (461)
66 TIGR00275 flavoprotein, HI0933 48.2 47 0.001 25.4 4.8 45 11-67 118-162 (400)
67 TIGR03862 flavo_PP4765 unchara 47.5 34 0.00073 26.9 4.1 52 4-67 92-143 (376)
68 PRK12409 D-amino acid dehydrog 47.5 15 0.00034 27.3 2.1 55 4-65 203-258 (410)
69 PRK11728 hydroxyglutarate oxid 46.9 18 0.00038 27.0 2.3 45 9-65 160-204 (393)
70 TIGR01790 carotene-cycl lycope 44.3 63 0.0014 23.7 4.9 44 11-65 98-141 (388)
71 PRK04965 NADH:flavorubredoxin 44.3 53 0.0011 24.4 4.5 45 11-66 196-240 (377)
72 cd01289 FabA_like Domain of un 44.1 67 0.0014 21.1 4.6 49 6-63 76-125 (138)
73 PRK07818 dihydrolipoamide dehy 43.0 64 0.0014 24.9 4.9 52 11-69 226-277 (466)
74 PF13915 DUF4210: Domain of un 41.3 32 0.0007 21.5 2.5 20 48-67 18-38 (66)
75 PRK13369 glycerol-3-phosphate 40.3 20 0.00044 28.1 1.8 51 6-63 163-213 (502)
76 KOG3855|consensus 39.5 49 0.0011 27.6 4.0 31 36-68 190-220 (481)
77 PRK01747 mnmC bifunctional tRN 38.8 35 0.00076 27.8 3.1 49 5-65 415-463 (662)
78 PF13434 K_oxygenase: L-lysine 37.4 28 0.0006 26.5 2.2 44 13-62 294-338 (341)
79 PRK15317 alkyl hydroperoxide r 35.5 1E+02 0.0022 24.3 5.1 47 11-68 279-325 (517)
80 PF04820 Trp_halogenase: Trypt 35.0 15 0.00033 28.8 0.4 56 3-69 159-215 (454)
81 PRK05363 TMAO/DMSO reductase; 34.9 62 0.0013 25.5 3.8 53 16-68 239-298 (319)
82 PRK06481 fumarate reductase fl 34.4 27 0.00057 27.6 1.7 53 6-64 198-250 (506)
83 PRK05249 soluble pyridine nucl 34.1 1.1E+02 0.0023 23.4 4.8 47 11-68 229-275 (461)
84 COG3486 IucD Lysine/ornithine 33.8 89 0.0019 25.8 4.6 34 38-71 312-346 (436)
85 PF05585 DUF1758: Putative pep 33.6 19 0.00042 24.0 0.7 12 52-63 114-125 (164)
86 PRK06115 dihydrolipoamide dehy 30.6 1.2E+02 0.0027 23.5 4.8 51 11-68 228-279 (466)
87 PRK13339 malate:quinone oxidor 28.2 1.3E+02 0.0027 24.6 4.6 47 11-63 198-245 (497)
88 TIGR01320 mal_quin_oxido malat 27.1 47 0.001 26.4 2.0 53 6-64 186-240 (483)
89 TIGR00292 thiazole biosynthesi 27.1 19 0.00041 26.3 -0.2 59 5-65 107-170 (254)
90 PF00743 FMO-like: Flavin-bind 27.1 69 0.0015 26.0 3.0 50 15-67 103-152 (531)
91 TIGR03140 AhpF alkyl hydropero 27.0 1.9E+02 0.004 22.9 5.3 47 11-68 280-326 (515)
92 PF10294 Methyltransf_16: Puta 25.7 31 0.00067 23.5 0.6 11 51-61 117-127 (173)
93 PF01266 DAO: FAD dependent ox 25.5 98 0.0021 21.5 3.1 45 9-65 158-203 (358)
94 PRK08671 methionine aminopepti 25.4 43 0.00094 24.8 1.4 28 37-64 260-287 (291)
95 TIGR02352 thiamin_ThiO glycine 25.2 60 0.0013 22.8 2.0 49 5-64 144-192 (337)
96 PF13567 DUF4131: Domain of un 24.6 80 0.0017 19.5 2.4 20 36-55 135-154 (176)
97 COG0024 Map Methionine aminope 24.5 1.7E+02 0.0036 22.2 4.4 54 4-64 194-247 (255)
98 PRK09897 hypothetical protein; 24.1 1.7E+02 0.0037 24.0 4.7 41 13-63 124-164 (534)
99 PRK12266 glpD glycerol-3-phosp 23.3 49 0.0011 26.2 1.4 52 6-64 163-215 (508)
100 COG1504 Uncharacterized conser 22.7 45 0.00098 23.2 1.0 14 51-64 18-31 (121)
101 PF06039 Mqo: Malate:quinone o 22.5 1.9E+02 0.004 24.3 4.6 46 12-64 196-244 (488)
102 cd01088 MetAP2 Methionine Amin 22.2 53 0.0011 24.3 1.3 28 37-64 260-287 (291)
103 KOG2614|consensus 20.5 46 0.001 27.3 0.8 17 51-67 149-165 (420)
104 PF09923 DUF2155: Uncharacteri 20.4 1.9E+02 0.0041 18.6 3.5 25 34-58 63-87 (90)
No 1
>PRK07588 hypothetical protein; Provisional
Probab=96.54 E-value=0.0065 Score=44.87 Aligned_cols=47 Identities=19% Similarity=0.263 Sum_probs=36.2
Q ss_pred EeEEEeeCceeceeeCCCCCCCcCceeeEEEEcCCCCCCCccEEeEEEecCCCccccC
Q psy4053 11 HGVEIHEGVGFESLLPPPSNQDEEKIGWRAVVSPPDHPVSQYEFNVLVGADGKRNTLE 68 (74)
Q Consensus 11 LGVeIH~~V~F~~L~eP~~~~~~~~~GWra~~~P~~h~ls~~eFdvlIgAdG~rn~l~ 68 (74)
-|++||.+.+..++.... .+|++.+.-. ...++|+||||||.++...
T Consensus 115 ~~v~i~~~~~v~~i~~~~-------~~v~v~~~~g----~~~~~d~vIgADG~~S~vR 161 (391)
T PRK07588 115 GQVETIFDDSIATIDEHR-------DGVRVTFERG----TPRDFDLVIGADGLHSHVR 161 (391)
T ss_pred cCeEEEeCCEEeEEEECC-------CeEEEEECCC----CEEEeCEEEECCCCCccch
Confidence 479999999999986422 2688887632 3468999999999988763
No 2
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=96.32 E-value=0.00057 Score=47.66 Aligned_cols=57 Identities=26% Similarity=0.292 Sum_probs=38.2
Q ss_pred eeeeeeEEeEEEeeCceeceeeCCCCCCCcCceeeEEEEcCC-CCCCCccEEeEEEecCCCcccc
Q psy4053 4 EYVVNQVHGVEIHEGVGFESLLPPPSNQDEEKIGWRAVVSPP-DHPVSQYEFNVLVGADGKRNTL 67 (74)
Q Consensus 4 LLKVALLLGVeIH~~V~F~~L~eP~~~~~~~~~GWra~~~P~-~h~ls~~eFdvlIgAdG~rn~l 67 (74)
|.+.|.-.|++|+++..++++.+= . .+.++.+.-. +..-..++.|+||||||.++.+
T Consensus 117 L~~~~~~~gv~i~~~~~v~~~~~d---~----~~~~~~~~~~~~g~~~~i~adlvVgADG~~S~v 174 (356)
T PF01494_consen 117 LREEAEERGVDIRFGTRVVSIEQD---D----DGVTVVVRDGEDGEEETIEADLVVGADGAHSKV 174 (356)
T ss_dssp HHHHHHHHTEEEEESEEEEEEEEE---T----TEEEEEEEETCTCEEEEEEESEEEE-SGTT-HH
T ss_pred hhhhhhhhhhhheeeeeccccccc---c----cccccccccccCCceeEEEEeeeecccCcccch
Confidence 334444568999999999988641 1 2556655543 3444577899999999999865
No 3
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=96.26 E-value=0.0097 Score=43.95 Aligned_cols=48 Identities=13% Similarity=0.068 Sum_probs=35.6
Q ss_pred eEEEeeCceeceeeCCCCCCCcCceeeEEEEcCCCCCCCccEEeEEEecCCCcccc
Q psy4053 12 GVEIHEGVGFESLLPPPSNQDEEKIGWRAVVSPPDHPVSQYEFNVLVGADGKRNTL 67 (74)
Q Consensus 12 GVeIH~~V~F~~L~eP~~~~~~~~~GWra~~~P~~h~ls~~eFdvlIgAdG~rn~l 67 (74)
||+|+.+.++.++..-. .++++.+.-.+ .-..++.|.||||||.++.+
T Consensus 136 ~v~i~~~~~v~~v~~~~-------~~~~v~~~~~~-~~~~i~adlvIgADG~~S~v 183 (415)
T PRK07364 136 NITWLCPAEVVSVEYQQ-------DAATVTLEIEG-KQQTLQSKLVVAADGARSPI 183 (415)
T ss_pred CcEEEcCCeeEEEEecC-------CeeEEEEccCC-cceEEeeeEEEEeCCCCchh
Confidence 79999999999986421 26788776322 12358999999999998865
No 4
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=96.10 E-value=0.011 Score=46.33 Aligned_cols=50 Identities=18% Similarity=0.221 Sum_probs=38.8
Q ss_pred EeEEEeeCceeceeeCCCCCCCcCceeeEEEEcCCCCCCCccEEeEEEecCCCcccc
Q psy4053 11 HGVEIHEGVGFESLLPPPSNQDEEKIGWRAVVSPPDHPVSQYEFNVLVGADGKRNTL 67 (74)
Q Consensus 11 LGVeIH~~V~F~~L~eP~~~~~~~~~GWra~~~P~~h~ls~~eFdvlIgAdG~rn~l 67 (74)
-||+|+++.+.+++.+- ..|+++.+.-.+..-...+.|.||||||.++++
T Consensus 127 ~gv~v~~g~~v~~i~~~-------~~~v~v~~~~~~G~~~~i~ad~vVgADG~~S~v 176 (538)
T PRK06183 127 PHVRVRFGHEVTALTQD-------DDGVTVTLTDADGQRETVRARYVVGCDGANSFV 176 (538)
T ss_pred CCcEEEcCCEEEEEEEc-------CCeEEEEEEcCCCCEEEEEEEEEEecCCCchhH
Confidence 38999999999998641 126888876434444568899999999999876
No 5
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=95.93 E-value=0.021 Score=43.47 Aligned_cols=52 Identities=21% Similarity=0.273 Sum_probs=37.5
Q ss_pred eEEEeeCceeceeeCCCCCCCcCceeeEEEEcCCCCCCCccEEeEEEecCCCcccc
Q psy4053 12 GVEIHEGVGFESLLPPPSNQDEEKIGWRAVVSPPDHPVSQYEFNVLVGADGKRNTL 67 (74)
Q Consensus 12 GVeIH~~V~F~~L~eP~~~~~~~~~GWra~~~P~~h~ls~~eFdvlIgAdG~rn~l 67 (74)
+++|+.+.++.++..+..+++....+.++.+. +. ...+.|.||||||.++++
T Consensus 134 ~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~--~g--~~i~a~llVgADG~~S~v 185 (437)
T TIGR01989 134 NVKILNPARLISVTIPSKYPNDNSNWVHITLS--DG--QVLYTKLLIGADGSNSNV 185 (437)
T ss_pred CeEEecCCeeEEEEeccccccCCCCceEEEEc--CC--CEEEeeEEEEecCCCChh
Confidence 49999999999997543222222346777664 32 368999999999999876
No 6
>PRK05868 hypothetical protein; Validated
Probab=95.82 E-value=0.021 Score=42.70 Aligned_cols=49 Identities=20% Similarity=0.266 Sum_probs=35.9
Q ss_pred eeEEeEEEeeCceeceeeCCCCCCCcCceeeEEEEcCCCCCCCccEEeEEEecCCCcccc
Q psy4053 8 NQVHGVEIHEGVGFESLLPPPSNQDEEKIGWRAVVSPPDHPVSQYEFNVLVGADGKRNTL 67 (74)
Q Consensus 8 ALLLGVeIH~~V~F~~L~eP~~~~~~~~~GWra~~~P~~h~ls~~eFdvlIgAdG~rn~l 67 (74)
|+--|++|+.+.+.+++.+ .. .+.++.+.-. +..++|+||||||.+++.
T Consensus 114 ~~~~~v~i~~~~~v~~i~~-~~------~~v~v~~~dg----~~~~adlvIgADG~~S~v 162 (372)
T PRK05868 114 ATQPSVEYLFDDSISTLQD-DG------DSVRVTFERA----AAREFDLVIGADGLHSNV 162 (372)
T ss_pred hccCCcEEEeCCEEEEEEe-cC------CeEEEEECCC----CeEEeCEEEECCCCCchH
Confidence 3345899999999998853 11 2567766532 357999999999998876
No 7
>PRK06475 salicylate hydroxylase; Provisional
Probab=95.79 E-value=0.018 Score=42.98 Aligned_cols=49 Identities=22% Similarity=0.268 Sum_probs=35.3
Q ss_pred EeEEEeeCceeceeeCCCCCCCcCceeeEEEEcCCCCCCCccEEeEEEecCCCcccc
Q psy4053 11 HGVEIHEGVGFESLLPPPSNQDEEKIGWRAVVSPPDHPVSQYEFNVLVGADGKRNTL 67 (74)
Q Consensus 11 LGVeIH~~V~F~~L~eP~~~~~~~~~GWra~~~P~~h~ls~~eFdvlIgAdG~rn~l 67 (74)
.|++||.+...+++.+ . ..++++.+.-.+ --..++.|+||||||.+++.
T Consensus 121 ~~i~v~~~~~v~~~~~-~------~~~v~v~~~~~~-~~~~~~adlvIgADG~~S~v 169 (400)
T PRK06475 121 PGIEIKLGAEMTSQRQ-T------GNSITATIIRTN-SVETVSAAYLIACDGVWSML 169 (400)
T ss_pred CCcEEEECCEEEEEec-C------CCceEEEEEeCC-CCcEEecCEEEECCCccHhH
Confidence 4789999999988864 1 125777765322 12357899999999999865
No 8
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=95.65 E-value=0.024 Score=41.28 Aligned_cols=45 Identities=13% Similarity=0.243 Sum_probs=34.6
Q ss_pred eEEEeeCceeceeeCCCCCCCcCceeeEEEEcCCCCCCCccEEeEEEecCCCcccc
Q psy4053 12 GVEIHEGVGFESLLPPPSNQDEEKIGWRAVVSPPDHPVSQYEFNVLVGADGKRNTL 67 (74)
Q Consensus 12 GVeIH~~V~F~~L~eP~~~~~~~~~GWra~~~P~~h~ls~~eFdvlIgAdG~rn~l 67 (74)
||+++.+..++++.+ .+ .+|++.+... ..+++|.||+|||.++.+
T Consensus 120 gv~~~~~~~v~~i~~-~~------~~~~v~~~~g----~~~~ad~vV~AdG~~S~v 164 (382)
T TIGR01984 120 NIQLYCPARYKEIIR-NQ------DYVRVTLDNG----QQLRAKLLIAADGANSKV 164 (382)
T ss_pred CcEEEcCCeEEEEEE-cC------CeEEEEECCC----CEEEeeEEEEecCCChHH
Confidence 899999999999874 21 2687776432 368999999999988753
No 9
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=95.46 E-value=0.007 Score=45.04 Aligned_cols=57 Identities=14% Similarity=0.052 Sum_probs=37.2
Q ss_pred eeeeeeEEeEEEeeCceeceeeCCCCCCCcCceeeEEEEcCCCCCCCccEEeEEEecCCCcccc
Q psy4053 4 EYVVNQVHGVEIHEGVGFESLLPPPSNQDEEKIGWRAVVSPPDHPVSQYEFNVLVGADGKRNTL 67 (74)
Q Consensus 4 LLKVALLLGVeIH~~V~F~~L~eP~~~~~~~~~GWra~~~P~~h~ls~~eFdvlIgAdG~rn~l 67 (74)
|++-|.-.|++|+++++..++.+..++ +-++.+.. +..-..++.|+||||||.++.+
T Consensus 109 Ll~~a~~~gv~v~~~~~v~~i~~~~~~------~~~V~~~~-~G~~~~i~ad~vVgADG~~S~v 165 (392)
T PRK08243 109 LMAARLAAGGPIRFEASDVALHDFDSD------RPYVTYEK-DGEEHRLDCDFIAGCDGFHGVS 165 (392)
T ss_pred HHHHHHhCCCeEEEeeeEEEEEecCCC------ceEEEEEc-CCeEEEEEeCEEEECCCCCCch
Confidence 333345579999999999988742221 22344431 2222357889999999999876
No 10
>PRK11445 putative oxidoreductase; Provisional
Probab=95.36 E-value=0.026 Score=41.76 Aligned_cols=49 Identities=18% Similarity=0.228 Sum_probs=36.3
Q ss_pred EeEEEeeCceeceeeCCCCCCCcCceeeEEEEcCCCCCCCccEEeEEEecCCCcccc
Q psy4053 11 HGVEIHEGVGFESLLPPPSNQDEEKIGWRAVVSPPDHPVSQYEFNVLVGADGKRNTL 67 (74)
Q Consensus 11 LGVeIH~~V~F~~L~eP~~~~~~~~~GWra~~~P~~h~ls~~eFdvlIgAdG~rn~l 67 (74)
-||+++.+....++.+-. .+|++.+.... ....++.|.||+|||.++.+
T Consensus 111 ~gv~v~~~~~v~~i~~~~-------~~~~v~~~~~g-~~~~i~a~~vV~AdG~~S~v 159 (351)
T PRK11445 111 ASVEVYHNSLCRKIWRED-------DGYHVIFRADG-WEQHITARYLVGADGANSMV 159 (351)
T ss_pred cCCEEEcCCEEEEEEEcC-------CEEEEEEecCC-cEEEEEeCEEEECCCCCcHH
Confidence 589999999999886421 27988875332 22257899999999998865
No 11
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=95.34 E-value=0.032 Score=41.40 Aligned_cols=44 Identities=14% Similarity=0.197 Sum_probs=34.3
Q ss_pred eEEEeeCceeceeeCCCCCCCcCceeeEEEEcCCCCCCCccEEeEEEecCCCcccc
Q psy4053 12 GVEIHEGVGFESLLPPPSNQDEEKIGWRAVVSPPDHPVSQYEFNVLVGADGKRNTL 67 (74)
Q Consensus 12 GVeIH~~V~F~~L~eP~~~~~~~~~GWra~~~P~~h~ls~~eFdvlIgAdG~rn~l 67 (74)
+++++.+.+..++.+= ..+|++.+. +. .++.|.||||||.++++
T Consensus 119 ~v~~~~~~~v~~i~~~-------~~~v~v~~~--~~---~~~adlvIgADG~~S~v 162 (374)
T PRK06617 119 LITLIDNNQYQEVISH-------NDYSIIKFD--DK---QIKCNLLIICDGANSKV 162 (374)
T ss_pred CcEEECCCeEEEEEEc-------CCeEEEEEc--CC---EEeeCEEEEeCCCCchh
Confidence 3889999999998641 126888874 32 68899999999999876
No 12
>PRK08244 hypothetical protein; Provisional
Probab=95.22 E-value=0.01 Score=45.65 Aligned_cols=55 Identities=27% Similarity=0.331 Sum_probs=38.8
Q ss_pred eeeeeEEeEEEeeCceeceeeCCCCCCCcCceeeEEEEcCCCCCCCccEEeEEEecCCCcccc
Q psy4053 5 YVVNQVHGVEIHEGVGFESLLPPPSNQDEEKIGWRAVVSPPDHPVSQYEFNVLVGADGKRNTL 67 (74)
Q Consensus 5 LKVALLLGVeIH~~V~F~~L~eP~~~~~~~~~GWra~~~P~~h~ls~~eFdvlIgAdG~rn~l 67 (74)
.+-+.-.||+|+.+.+++++..- + .+.++.+.-.+. -...+.|.||||||.++++
T Consensus 107 ~~~~~~~gv~v~~~~~v~~i~~~-~------~~v~v~~~~~~g-~~~i~a~~vVgADG~~S~v 161 (493)
T PRK08244 107 EEHARSLGVEIFRGAEVLAVRQD-G------DGVEVVVRGPDG-LRTLTSSYVVGADGAGSIV 161 (493)
T ss_pred HHHHHHcCCeEEeCCEEEEEEEc-C------CeEEEEEEeCCc-cEEEEeCEEEECCCCChHH
Confidence 33344469999999999998531 1 257777754332 2357899999999999865
No 13
>PRK08013 oxidoreductase; Provisional
Probab=95.12 E-value=0.047 Score=40.85 Aligned_cols=45 Identities=18% Similarity=0.158 Sum_probs=34.2
Q ss_pred eEEEeeCceeceeeCCCCCCCcCceeeEEEEcCCCCCCCccEEeEEEecCCCcccc
Q psy4053 12 GVEIHEGVGFESLLPPPSNQDEEKIGWRAVVSPPDHPVSQYEFNVLVGADGKRNTL 67 (74)
Q Consensus 12 GVeIH~~V~F~~L~eP~~~~~~~~~GWra~~~P~~h~ls~~eFdvlIgAdG~rn~l 67 (74)
||+|+.+.+..++.+- + .++++.+. +. ..++.|.||||||.++++
T Consensus 126 ~v~i~~~~~v~~i~~~-~------~~v~v~~~--~g--~~i~a~lvVgADG~~S~v 170 (400)
T PRK08013 126 DITLLAPAELQQVAWG-E------NEAFLTLK--DG--SMLTARLVVGADGANSWL 170 (400)
T ss_pred CcEEEcCCeeEEEEec-C------CeEEEEEc--CC--CEEEeeEEEEeCCCCcHH
Confidence 7999999999998642 1 25666663 22 358999999999999876
No 14
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=95.08 E-value=0.047 Score=40.13 Aligned_cols=45 Identities=18% Similarity=0.415 Sum_probs=35.0
Q ss_pred eEEEeeCceeceeeCCCCCCCcCceeeEEEEcCCCCCCCccEEeEEEecCCCcccc
Q psy4053 12 GVEIHEGVGFESLLPPPSNQDEEKIGWRAVVSPPDHPVSQYEFNVLVGADGKRNTL 67 (74)
Q Consensus 12 GVeIH~~V~F~~L~eP~~~~~~~~~GWra~~~P~~h~ls~~eFdvlIgAdG~rn~l 67 (74)
|++|+.+...+++.+-. .+|++.+.- . ..++.|+||+|||.++++
T Consensus 127 gv~i~~~~~v~~i~~~~-------~~~~v~~~~--g--~~~~a~~vI~AdG~~S~v 171 (391)
T PRK08020 127 NVTLRCPASLQALQRDD-------DGWELTLAD--G--EEIQAKLVIGADGANSQV 171 (391)
T ss_pred CcEEEcCCeeEEEEEcC-------CeEEEEECC--C--CEEEeCEEEEeCCCCchh
Confidence 89999999999986421 268887752 2 368899999999999875
No 15
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=95.08 E-value=0.051 Score=40.36 Aligned_cols=46 Identities=17% Similarity=0.232 Sum_probs=35.8
Q ss_pred EeEEEeeCceeceeeCCCCCCCcCceeeEEEEcCCCCCCCccEEeEEEecCCCcccc
Q psy4053 11 HGVEIHEGVGFESLLPPPSNQDEEKIGWRAVVSPPDHPVSQYEFNVLVGADGKRNTL 67 (74)
Q Consensus 11 LGVeIH~~V~F~~L~eP~~~~~~~~~GWra~~~P~~h~ls~~eFdvlIgAdG~rn~l 67 (74)
-|++|+.+.+.+++..- + .++++.+.- . ..++.|.||||||.++.+
T Consensus 124 ~~i~i~~~~~v~~~~~~-~------~~~~v~~~~--g--~~~~~~lvIgADG~~S~v 169 (384)
T PRK08849 124 PNLTLMCPEKLADLEFS-A------EGNRVTLES--G--AEIEAKWVIGADGANSQV 169 (384)
T ss_pred CCeEEECCCceeEEEEc-C------CeEEEEECC--C--CEEEeeEEEEecCCCchh
Confidence 47999999999998641 1 267888752 2 478999999999999875
No 16
>PRK09126 hypothetical protein; Provisional
Probab=95.07 E-value=0.048 Score=39.99 Aligned_cols=46 Identities=17% Similarity=0.301 Sum_probs=35.0
Q ss_pred EeEEEeeCceeceeeCCCCCCCcCceeeEEEEcCCCCCCCccEEeEEEecCCCcccc
Q psy4053 11 HGVEIHEGVGFESLLPPPSNQDEEKIGWRAVVSPPDHPVSQYEFNVLVGADGKRNTL 67 (74)
Q Consensus 11 LGVeIH~~V~F~~L~eP~~~~~~~~~GWra~~~P~~h~ls~~eFdvlIgAdG~rn~l 67 (74)
.|++|+.+...+++.+- + .+|++.+. +. ..++.|.||+|||.++.+
T Consensus 124 ~g~~i~~~~~v~~~~~~-~------~~~~v~~~--~g--~~~~a~~vI~AdG~~S~v 169 (392)
T PRK09126 124 DGIELLTGTRVTAVRTD-D------DGAQVTLA--NG--RRLTARLLVAADSRFSAT 169 (392)
T ss_pred CCcEEEcCCeEEEEEEc-C------CeEEEEEc--CC--CEEEeCEEEEeCCCCchh
Confidence 59999999999998541 1 25777664 22 368999999999998765
No 17
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=94.92 E-value=0.019 Score=41.40 Aligned_cols=49 Identities=22% Similarity=0.150 Sum_probs=35.6
Q ss_pred eeEEe-EEEeeCceeceeeCCCCCCCcCceeeEEEEcCCCCCCCccEEeEEEecCCCcccc
Q psy4053 8 NQVHG-VEIHEGVGFESLLPPPSNQDEEKIGWRAVVSPPDHPVSQYEFNVLVGADGKRNTL 67 (74)
Q Consensus 8 ALLLG-VeIH~~V~F~~L~eP~~~~~~~~~GWra~~~P~~h~ls~~eFdvlIgAdG~rn~l 67 (74)
|.-.| ++|+.+.+.+++.... .+|.+.+. +. ..++.|.||+|||.++.+
T Consensus 116 ~~~~~~~~v~~~~~v~~i~~~~-------~~~~v~~~--~g--~~~~~~~vi~adG~~S~v 165 (385)
T TIGR01988 116 LQEYPNVTLLCPARVVELPRHS-------DHVELTLD--DG--QQLRARLLVGADGANSKV 165 (385)
T ss_pred HHhCCCcEEecCCeEEEEEecC-------CeeEEEEC--CC--CEEEeeEEEEeCCCCCHH
Confidence 34456 9999999999986421 25766654 22 258999999999998764
No 18
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=94.88 E-value=0.053 Score=40.26 Aligned_cols=46 Identities=17% Similarity=0.326 Sum_probs=35.5
Q ss_pred EeEEEeeCceeceeeCCCCCCCcCceeeEEEEcCCCCCCCccEEeEEEecCCCcccc
Q psy4053 11 HGVEIHEGVGFESLLPPPSNQDEEKIGWRAVVSPPDHPVSQYEFNVLVGADGKRNTL 67 (74)
Q Consensus 11 LGVeIH~~V~F~~L~eP~~~~~~~~~GWra~~~P~~h~ls~~eFdvlIgAdG~rn~l 67 (74)
.|++|+.+.++.++.+- ..+|++.+. +. ..++.|.||||||.++.+
T Consensus 125 ~gv~v~~~~~v~~i~~~-------~~~v~v~~~--~g--~~~~a~~vVgAdG~~S~v 170 (405)
T PRK05714 125 SDIGLLANARLEQMRRS-------GDDWLLTLA--DG--RQLRAPLVVAADGANSAV 170 (405)
T ss_pred CCCEEEcCCEEEEEEEc-------CCeEEEEEC--CC--CEEEeCEEEEecCCCchh
Confidence 48999999999998631 126888774 22 368999999999998865
No 19
>PRK07045 putative monooxygenase; Reviewed
Probab=94.86 E-value=0.047 Score=40.30 Aligned_cols=50 Identities=24% Similarity=0.276 Sum_probs=35.4
Q ss_pred eEEeEEEeeCceeceeeCCCCCCCcCceeeEEEEcCCCCCCCccEEeEEEecCCCcccc
Q psy4053 9 QVHGVEIHEGVGFESLLPPPSNQDEEKIGWRAVVSPPDHPVSQYEFNVLVGADGKRNTL 67 (74)
Q Consensus 9 LLLGVeIH~~V~F~~L~eP~~~~~~~~~GWra~~~P~~h~ls~~eFdvlIgAdG~rn~l 67 (74)
..-|++|+.+...+++.+-.+ + .-|++.+. +. ..++.|.||||||.++.+
T Consensus 118 ~~~gv~i~~~~~v~~i~~~~~-~----~~~~v~~~--~g--~~~~~~~vIgADG~~S~v 167 (388)
T PRK07045 118 GLPNVRLRFETSIERIERDAD-G----TVTSVTLS--DG--ERVAPTVLVGADGARSMI 167 (388)
T ss_pred cCCCeeEEeCCEEEEEEECCC-C----cEEEEEeC--CC--CEEECCEEEECCCCChHH
Confidence 346899999999999875322 1 13455553 32 368899999999999754
No 20
>PRK06126 hypothetical protein; Provisional
Probab=94.59 E-value=0.059 Score=42.04 Aligned_cols=50 Identities=24% Similarity=0.306 Sum_probs=37.2
Q ss_pred EeEEEeeCceeceeeCCCCCCCcCceeeEEEEcC-CCCCCCccEEeEEEecCCCcccc
Q psy4053 11 HGVEIHEGVGFESLLPPPSNQDEEKIGWRAVVSP-PDHPVSQYEFNVLVGADGKRNTL 67 (74)
Q Consensus 11 LGVeIH~~V~F~~L~eP~~~~~~~~~GWra~~~P-~~h~ls~~eFdvlIgAdG~rn~l 67 (74)
-|++|+.+..++++.+-. .++.+.+.- .+.....++.|.||||||.++.+
T Consensus 140 ~~v~i~~~~~v~~i~~~~-------~~v~v~~~~~~~g~~~~i~ad~vVgADG~~S~V 190 (545)
T PRK06126 140 PGVTLRYGHRLTDFEQDA-------DGVTATVEDLDGGESLTIRADYLVGCDGARSAV 190 (545)
T ss_pred CCceEEeccEEEEEEECC-------CeEEEEEEECCCCcEEEEEEEEEEecCCcchHH
Confidence 489999999999997422 256666643 34444567899999999999865
No 21
>PRK07236 hypothetical protein; Provisional
Probab=94.58 E-value=0.076 Score=39.38 Aligned_cols=46 Identities=24% Similarity=0.221 Sum_probs=34.7
Q ss_pred EeEEEeeCceeceeeCCCCCCCcCceeeEEEEcCCCCCCCccEEeEEEecCCCcccc
Q psy4053 11 HGVEIHEGVGFESLLPPPSNQDEEKIGWRAVVSPPDHPVSQYEFNVLVGADGKRNTL 67 (74)
Q Consensus 11 LGVeIH~~V~F~~L~eP~~~~~~~~~GWra~~~P~~h~ls~~eFdvlIgAdG~rn~l 67 (74)
-+++||.+..++++.+- ..++++.+.= . ..++.|.||||||.++.+
T Consensus 111 ~~~~i~~~~~v~~i~~~-------~~~v~v~~~~--g--~~~~ad~vIgADG~~S~v 156 (386)
T PRK07236 111 PAERYHLGETLVGFEQD-------GDRVTARFAD--G--RRETADLLVGADGGRSTV 156 (386)
T ss_pred CCcEEEcCCEEEEEEec-------CCeEEEEECC--C--CEEEeCEEEECCCCCchH
Confidence 35689999999999641 1268877752 2 368999999999998765
No 22
>PRK06847 hypothetical protein; Provisional
Probab=94.51 E-value=0.085 Score=38.38 Aligned_cols=47 Identities=19% Similarity=0.330 Sum_probs=35.4
Q ss_pred EEeEEEeeCceeceeeCCCCCCCcCceeeEEEEcCCCCCCCccEEeEEEecCCCcccc
Q psy4053 10 VHGVEIHEGVGFESLLPPPSNQDEEKIGWRAVVSPPDHPVSQYEFNVLVGADGKRNTL 67 (74)
Q Consensus 10 LLGVeIH~~V~F~~L~eP~~~~~~~~~GWra~~~P~~h~ls~~eFdvlIgAdG~rn~l 67 (74)
-.|++|+.+....++..-. .+|++.+.- . ..+++|.||+|||.++..
T Consensus 119 ~~gv~v~~~~~v~~i~~~~-------~~~~v~~~~--g--~~~~ad~vI~AdG~~s~~ 165 (375)
T PRK06847 119 AAGADVRLGTTVTAIEQDD-------DGVTVTFSD--G--TTGRYDLVVGADGLYSKV 165 (375)
T ss_pred HhCCEEEeCCEEEEEEEcC-------CEEEEEEcC--C--CEEEcCEEEECcCCCcch
Confidence 3699999999999986421 257777642 2 358899999999988765
No 23
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=94.14 E-value=0.11 Score=38.73 Aligned_cols=46 Identities=17% Similarity=0.169 Sum_probs=34.5
Q ss_pred EeEEEeeCceeceeeCCCCCCCcCceeeEEEEcCCCCCCCccEEeEEEecCCCcccc
Q psy4053 11 HGVEIHEGVGFESLLPPPSNQDEEKIGWRAVVSPPDHPVSQYEFNVLVGADGKRNTL 67 (74)
Q Consensus 11 LGVeIH~~V~F~~L~eP~~~~~~~~~GWra~~~P~~h~ls~~eFdvlIgAdG~rn~l 67 (74)
-||+|+.+.+.+++.+- + .++++.+. +. ..++.|.||||||.++.+
T Consensus 125 ~~v~v~~~~~v~~i~~~-~------~~~~v~~~--~g--~~~~a~lvIgADG~~S~v 170 (405)
T PRK08850 125 DNVTLLMPARCQSIAVG-E------SEAWLTLD--NG--QALTAKLVVGADGANSWL 170 (405)
T ss_pred CCeEEEcCCeeEEEEee-C------CeEEEEEC--CC--CEEEeCEEEEeCCCCChh
Confidence 37999999999998641 1 25777764 22 368999999999998865
No 24
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=93.99 E-value=0.11 Score=40.69 Aligned_cols=48 Identities=21% Similarity=0.271 Sum_probs=36.0
Q ss_pred eEEEeeCceeceeeCCCCCCCcCceeeEEEEcCCCCCCCccEEeEEEecCCCcccc
Q psy4053 12 GVEIHEGVGFESLLPPPSNQDEEKIGWRAVVSPPDHPVSQYEFNVLVGADGKRNTL 67 (74)
Q Consensus 12 GVeIH~~V~F~~L~eP~~~~~~~~~GWra~~~P~~h~ls~~eFdvlIgAdG~rn~l 67 (74)
|++|+.+.+..++..- ..+|++.+.-.+. -..++.|.||||||.++.+
T Consensus 140 ~v~v~~~~~v~~i~~~-------~~~v~v~~~~~~g-~~~i~ad~vVgADG~~S~v 187 (547)
T PRK08132 140 NIDLRWKNKVTGLEQH-------DDGVTLTVETPDG-PYTLEADWVIACDGARSPL 187 (547)
T ss_pred CcEEEeCCEEEEEEEc-------CCEEEEEEECCCC-cEEEEeCEEEECCCCCcHH
Confidence 7999999999998642 1268877764333 2357899999999998865
No 25
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=93.94 E-value=0.12 Score=37.71 Aligned_cols=46 Identities=22% Similarity=0.262 Sum_probs=34.3
Q ss_pred EeEEEeeCceeceeeCCCCCCCcCceeeEEEEcCCCCCCCccEEeEEEecCCCcccc
Q psy4053 11 HGVEIHEGVGFESLLPPPSNQDEEKIGWRAVVSPPDHPVSQYEFNVLVGADGKRNTL 67 (74)
Q Consensus 11 LGVeIH~~V~F~~L~eP~~~~~~~~~GWra~~~P~~h~ls~~eFdvlIgAdG~rn~l 67 (74)
.|++|+.+.+..++.+ . ..+|.+.+.- . ..++.|.||+|||.++.+
T Consensus 126 ~g~~~~~~~~v~~i~~-~------~~~~~v~~~~--g--~~~~a~~vI~AdG~~S~v 171 (395)
T PRK05732 126 PGVTLHCPARVANVER-T------QGSVRVTLDD--G--ETLTGRLLVAADGSHSAL 171 (395)
T ss_pred CCcEEEcCCEEEEEEE-c------CCeEEEEECC--C--CEEEeCEEEEecCCChhh
Confidence 4899999999999864 1 1268776642 2 357899999999988764
No 26
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=93.88 E-value=0.052 Score=41.15 Aligned_cols=56 Identities=18% Similarity=0.244 Sum_probs=37.0
Q ss_pred eeeEEeEEEeeCceeceeeCCCCCCCcCceeeEEEEcCCC-----CCCCccEEeEEEecCCCcccc
Q psy4053 7 VNQVHGVEIHEGVGFESLLPPPSNQDEEKIGWRAVVSPPD-----HPVSQYEFNVLVGADGKRNTL 67 (74)
Q Consensus 7 VALLLGVeIH~~V~F~~L~eP~~~~~~~~~GWra~~~P~~-----h~ls~~eFdvlIgAdG~rn~l 67 (74)
-|.-.|++|+.+ ++.++..+... ..+|.+++.-.+ ..-..++.|+||+|||.++.+
T Consensus 102 ~a~~~G~~v~~~-~~~~i~~~~~~----~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S~v 162 (398)
T TIGR02028 102 RAADAGATLING-LVTKLSLPADA----DDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANSRV 162 (398)
T ss_pred HHHHCCcEEEcc-eEEEEEeccCC----CceEEEEEeeccccccCCCccEEEeCEEEECCCcchHH
Confidence 344569999888 47776543322 236888765322 222467899999999998865
No 27
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=93.88 E-value=0.039 Score=43.19 Aligned_cols=57 Identities=19% Similarity=0.272 Sum_probs=37.1
Q ss_pred eeeeEEeEEEeeCceeceeeCCCCCCCcCceeeEEEEcCCC-----CCCCccEEeEEEecCCCcccc
Q psy4053 6 VVNQVHGVEIHEGVGFESLLPPPSNQDEEKIGWRAVVSPPD-----HPVSQYEFNVLVGADGKRNTL 67 (74)
Q Consensus 6 KVALLLGVeIH~~V~F~~L~eP~~~~~~~~~GWra~~~P~~-----h~ls~~eFdvlIgAdG~rn~l 67 (74)
+-|.-.|++++.+ .+.++..+..+. .+|++.+...+ ..-..++.|+||||||.++.+
T Consensus 140 ~~A~~~Ga~~~~~-~v~~i~~~~~~~----~~~~v~~~~~~~~~~~g~~~~v~a~~VIgADG~~S~v 201 (450)
T PLN00093 140 ERAQSNGATLING-LFTRIDVPKDPN----GPYVIHYTSYDSGSGAGTPKTLEVDAVIGADGANSRV 201 (450)
T ss_pred HHHHHCCCEEEec-eEEEEEeccCCC----CcEEEEEEeccccccCCCccEEEeCEEEEcCCcchHH
Confidence 3344569999876 577776533221 25777765321 223568999999999988765
No 28
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=93.88 E-value=0.024 Score=42.61 Aligned_cols=57 Identities=11% Similarity=0.061 Sum_probs=35.7
Q ss_pred eeeeeeEEeEEEeeCceeceeeCCCCCCCcCceeeEEEEcCCCCCCCccEEeEEEecCCCcccc
Q psy4053 4 EYVVNQVHGVEIHEGVGFESLLPPPSNQDEEKIGWRAVVSPPDHPVSQYEFNVLVGADGKRNTL 67 (74)
Q Consensus 4 LLKVALLLGVeIH~~V~F~~L~eP~~~~~~~~~GWra~~~P~~h~ls~~eFdvlIgAdG~rn~l 67 (74)
|++-+.-.|++++.+.+...+.+-..+ +.++.+. .+..-...+.|.||||||.++++
T Consensus 109 L~~~~~~~g~~~~~~~~~v~~~~~~~~------~~~V~~~-~~g~~~~i~adlvIGADG~~S~V 165 (390)
T TIGR02360 109 LMEAREAAGLTTVYDADDVRLHDLAGD------RPYVTFE-RDGERHRLDCDFIAGCDGFHGVS 165 (390)
T ss_pred HHHHHHhcCCeEEEeeeeEEEEecCCC------ccEEEEE-ECCeEEEEEeCEEEECCCCchhh
Confidence 344344468899988877776542222 2445553 12222356789999999998865
No 29
>PRK06996 hypothetical protein; Provisional
Probab=93.74 E-value=0.16 Score=37.94 Aligned_cols=46 Identities=13% Similarity=0.105 Sum_probs=33.4
Q ss_pred EeEEEeeCceeceeeCCCCCCCcCceeeEEEEcCCCCCCCccEEeEEEecCCCc
Q psy4053 11 HGVEIHEGVGFESLLPPPSNQDEEKIGWRAVVSPPDHPVSQYEFNVLVGADGKR 64 (74)
Q Consensus 11 LGVeIH~~V~F~~L~eP~~~~~~~~~GWra~~~P~~h~ls~~eFdvlIgAdG~r 64 (74)
.|++++.+.+.+++.+ + ..||++.+.-.+.. ...+.|.||||||.+
T Consensus 128 ~g~~~~~~~~v~~~~~---~----~~~v~v~~~~~~g~-~~i~a~lvIgADG~~ 173 (398)
T PRK06996 128 TPVRWLTSTTAHAPAQ---D----ADGVTLALGTPQGA-RTLRARIAVQAEGGL 173 (398)
T ss_pred CCCEEEcCCeeeeeee---c----CCeEEEEECCCCcc-eEEeeeEEEECCCCC
Confidence 4889999998888732 1 23799887643332 357899999999964
No 30
>PRK06184 hypothetical protein; Provisional
Probab=93.54 E-value=0.036 Score=42.85 Aligned_cols=50 Identities=26% Similarity=0.272 Sum_probs=36.4
Q ss_pred EEeEEEeeCceeceeeCCCCCCCcCceeeEEEEcCCCCCCCccEEeEEEecCCCcccc
Q psy4053 10 VHGVEIHEGVGFESLLPPPSNQDEEKIGWRAVVSPPDHPVSQYEFNVLVGADGKRNTL 67 (74)
Q Consensus 10 LLGVeIH~~V~F~~L~eP~~~~~~~~~GWra~~~P~~h~ls~~eFdvlIgAdG~rn~l 67 (74)
-.|++|+.+.+..++..- ..++.+.+...+. -..++.|.||||||.++++
T Consensus 121 ~~gv~i~~~~~v~~i~~~-------~~~v~v~~~~~~~-~~~i~a~~vVgADG~~S~v 170 (502)
T PRK06184 121 ELGHRVEFGCELVGFEQD-------ADGVTARVAGPAG-EETVRARYLVGADGGRSFV 170 (502)
T ss_pred HCCCEEEeCcEEEEEEEc-------CCcEEEEEEeCCC-eEEEEeCEEEECCCCchHH
Confidence 358999999999998631 1257777643222 2468899999999999864
No 31
>PRK08163 salicylate hydroxylase; Provisional
Probab=93.50 E-value=0.15 Score=37.39 Aligned_cols=45 Identities=16% Similarity=0.210 Sum_probs=33.9
Q ss_pred eEEEeeCceeceeeCCCCCCCcCceeeEEEEcCCCCCCCccEEeEEEecCCCcccc
Q psy4053 12 GVEIHEGVGFESLLPPPSNQDEEKIGWRAVVSPPDHPVSQYEFNVLVGADGKRNTL 67 (74)
Q Consensus 12 GVeIH~~V~F~~L~eP~~~~~~~~~GWra~~~P~~h~ls~~eFdvlIgAdG~rn~l 67 (74)
+|++|.+..+.++.+ . ..++.+.+.-. ..++.|.||+|||.++..
T Consensus 124 ~v~~~~~~~v~~i~~-~------~~~v~v~~~~g----~~~~ad~vV~AdG~~S~~ 168 (396)
T PRK08163 124 LVEFRTSTHVVGIEQ-D------GDGVTVFDQQG----NRWTGDALIGCDGVKSVV 168 (396)
T ss_pred CcEEEeCCEEEEEec-C------CCceEEEEcCC----CEEecCEEEECCCcChHH
Confidence 499999999999874 1 12677776422 357899999999998765
No 32
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=93.04 E-value=0.19 Score=37.63 Aligned_cols=44 Identities=16% Similarity=0.237 Sum_probs=32.9
Q ss_pred eEEEeeCceeceeeCCCCCCCcCceeeEEEEcCCCCCCCccEEeEEEecCCCccc
Q psy4053 12 GVEIHEGVGFESLLPPPSNQDEEKIGWRAVVSPPDHPVSQYEFNVLVGADGKRNT 66 (74)
Q Consensus 12 GVeIH~~V~F~~L~eP~~~~~~~~~GWra~~~P~~h~ls~~eFdvlIgAdG~rn~ 66 (74)
.+.|+.+.+..++.+ .+ .+|++.+.-. +.+++|.||||||-+++
T Consensus 117 ~~~v~~~~~v~~i~~-~~------~~~~v~~~~g----~~~~ad~vVgADG~~S~ 160 (414)
T TIGR03219 117 EGIASFGKRATQIEE-QA------EEVQVLFTDG----TEYRCDLLIGADGIKSA 160 (414)
T ss_pred CceEEcCCEEEEEEe-cC------CcEEEEEcCC----CEEEeeEEEECCCccHH
Confidence 356788999998864 11 2688887532 35899999999998876
No 33
>PRK06834 hypothetical protein; Provisional
Probab=92.84 E-value=0.22 Score=39.22 Aligned_cols=46 Identities=28% Similarity=0.373 Sum_probs=35.9
Q ss_pred EeEEEeeCceeceeeCCCCCCCcCceeeEEEEcCCCCCCCccEEeEEEecCCCcccc
Q psy4053 11 HGVEIHEGVGFESLLPPPSNQDEEKIGWRAVVSPPDHPVSQYEFNVLVGADGKRNTL 67 (74)
Q Consensus 11 LGVeIH~~V~F~~L~eP~~~~~~~~~GWra~~~P~~h~ls~~eFdvlIgAdG~rn~l 67 (74)
+||+|+.+.+.+++.+- ..++.+++. +. ..++.|.||+|||.++++
T Consensus 113 ~gv~i~~~~~v~~v~~~-------~~~v~v~~~--~g--~~i~a~~vVgADG~~S~v 158 (488)
T PRK06834 113 LGVPIYRGREVTGFAQD-------DTGVDVELS--DG--RTLRAQYLVGCDGGRSLV 158 (488)
T ss_pred CCCEEEcCCEEEEEEEc-------CCeEEEEEC--CC--CEEEeCEEEEecCCCCCc
Confidence 59999999999999741 126777763 22 368999999999999876
No 34
>PRK06753 hypothetical protein; Provisional
Probab=92.76 E-value=0.2 Score=36.53 Aligned_cols=45 Identities=16% Similarity=0.176 Sum_probs=32.8
Q ss_pred eEEEeeCceeceeeCCCCCCCcCceeeEEEEcCCCCCCCccEEeEEEecCCCcccc
Q psy4053 12 GVEIHEGVGFESLLPPPSNQDEEKIGWRAVVSPPDHPVSQYEFNVLVGADGKRNTL 67 (74)
Q Consensus 12 GVeIH~~V~F~~L~eP~~~~~~~~~GWra~~~P~~h~ls~~eFdvlIgAdG~rn~l 67 (74)
..+||++...+++.+ . ..++++.+.- . ..+++|+||||||.++.+
T Consensus 110 ~~~i~~~~~v~~i~~-~------~~~v~v~~~~--g--~~~~~~~vigadG~~S~v 154 (373)
T PRK06753 110 EDAIFTGKEVTKIEN-E------TDKVTIHFAD--G--ESEAFDLCIGADGIHSKV 154 (373)
T ss_pred CceEEECCEEEEEEe-c------CCcEEEEECC--C--CEEecCEEEECCCcchHH
Confidence 467999999999863 1 1257776642 2 357899999999987654
No 35
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=92.72 E-value=0.23 Score=36.46 Aligned_cols=47 Identities=30% Similarity=0.437 Sum_probs=34.9
Q ss_pred EEeEEEeeCceeceeeCCCCCCCcCceeeEEEEcCCCCCCCccEEeEEEecCCCcccc
Q psy4053 10 VHGVEIHEGVGFESLLPPPSNQDEEKIGWRAVVSPPDHPVSQYEFNVLVGADGKRNTL 67 (74)
Q Consensus 10 LLGVeIH~~V~F~~L~eP~~~~~~~~~GWra~~~P~~h~ls~~eFdvlIgAdG~rn~l 67 (74)
-.||+|+.+.+.+++.+ .. .+|++.+. +. ..++.|.||+|||.++.+
T Consensus 123 ~~gv~v~~~~~v~~i~~-~~------~~v~v~~~--~g--~~~~ad~vI~AdG~~S~v 169 (403)
T PRK07333 123 ALGIDLREATSVTDFET-RD------EGVTVTLS--DG--SVLEARLLVAADGARSKL 169 (403)
T ss_pred hCCCEEEcCCEEEEEEE-cC------CEEEEEEC--CC--CEEEeCEEEEcCCCChHH
Confidence 35999999999998863 11 25777763 22 357899999999998765
No 36
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=92.65 E-value=0.2 Score=37.49 Aligned_cols=45 Identities=27% Similarity=0.360 Sum_probs=35.0
Q ss_pred EEEeeCceeceeeCCCCCCCcCceeeEEEEcCCCCCCCccEEeEEEecCCCcccc
Q psy4053 13 VEIHEGVGFESLLPPPSNQDEEKIGWRAVVSPPDHPVSQYEFNVLVGADGKRNTL 67 (74)
Q Consensus 13 VeIH~~V~F~~L~eP~~~~~~~~~GWra~~~P~~h~ls~~eFdvlIgAdG~rn~l 67 (74)
|+++.+.+-+.+..=+ .++++.+.= +.. .++.|.||||||.++.+
T Consensus 120 v~~~~~~~v~~~~~~~-------~~v~v~l~~-dG~--~~~a~llVgADG~~S~v 164 (387)
T COG0654 120 VTLRFGAEVEAVEQDG-------DGVTVTLSF-DGE--TLDADLLVGADGANSAV 164 (387)
T ss_pred cEEEcCceEEEEEEcC-------CceEEEEcC-CCc--EEecCEEEECCCCchHH
Confidence 8999999999987522 256777663 444 88999999999988764
No 37
>PRK07538 hypothetical protein; Provisional
Probab=92.50 E-value=0.29 Score=36.73 Aligned_cols=50 Identities=16% Similarity=0.156 Sum_probs=33.2
Q ss_pred Ee-EEEeeCceeceeeCCCCCCCcCceeeEEEEcCC-CCCCCccEEeEEEecCCCcccc
Q psy4053 11 HG-VEIHEGVGFESLLPPPSNQDEEKIGWRAVVSPP-DHPVSQYEFNVLVGADGKRNTL 67 (74)
Q Consensus 11 LG-VeIH~~V~F~~L~eP~~~~~~~~~GWra~~~P~-~h~ls~~eFdvlIgAdG~rn~l 67 (74)
+| +.|+++..++++.+ .+ .|..+.+.=. +.-....+.|+||||||.++..
T Consensus 116 ~g~~~i~~~~~v~~~~~-~~------~~~~~~~~~~~~g~~~~~~adlvIgADG~~S~v 167 (413)
T PRK07538 116 LGPDAVRTGHRVVGFEQ-DA------DVTVVFLGDRAGGDLVSVRGDVLIGADGIHSAV 167 (413)
T ss_pred cCCcEEEcCCEEEEEEe-cC------CceEEEEeccCCCccceEEeeEEEECCCCCHHH
Confidence 56 46999999999864 21 1344444311 1223467899999999988764
No 38
>PRK07190 hypothetical protein; Provisional
Probab=92.47 E-value=0.2 Score=39.49 Aligned_cols=47 Identities=17% Similarity=0.279 Sum_probs=35.3
Q ss_pred EEeEEEeeCceeceeeCCCCCCCcCceeeEEEEcCCCCCCCccEEeEEEecCCCcccc
Q psy4053 10 VHGVEIHEGVGFESLLPPPSNQDEEKIGWRAVVSPPDHPVSQYEFNVLVGADGKRNTL 67 (74)
Q Consensus 10 LLGVeIH~~V~F~~L~eP~~~~~~~~~GWra~~~P~~h~ls~~eFdvlIgAdG~rn~l 67 (74)
-+||+|+.+++..++..-. .|+++.+.- . ..++.+.||||||.++++
T Consensus 121 ~~Gv~v~~~~~v~~l~~~~-------~~v~v~~~~--g--~~v~a~~vVgADG~~S~v 167 (487)
T PRK07190 121 EAGAAVKRNTSVVNIELNQ-------AGCLTTLSN--G--ERIQSRYVIGADGSRSFV 167 (487)
T ss_pred HCCCEEEeCCEEEEEEEcC-------CeeEEEECC--C--cEEEeCEEEECCCCCHHH
Confidence 3699999999999986421 257766632 2 267889999999999865
No 39
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=91.95 E-value=0.31 Score=36.33 Aligned_cols=51 Identities=27% Similarity=0.350 Sum_probs=33.7
Q ss_pred eEEeEEEeeCceeceeeCCCCCCCcCceeeEEEEcCC----CCCCCccEEeEEEecCCCcccc
Q psy4053 9 QVHGVEIHEGVGFESLLPPPSNQDEEKIGWRAVVSPP----DHPVSQYEFNVLVGADGKRNTL 67 (74)
Q Consensus 9 LLLGVeIH~~V~F~~L~eP~~~~~~~~~GWra~~~P~----~h~ls~~eFdvlIgAdG~rn~l 67 (74)
.-.|++|+.+ .++++.+ .+ .+|.+.+.-. +..-..++.|+||+|||.++.+
T Consensus 103 ~~~G~~v~~~-~v~~v~~-~~------~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~v 157 (388)
T TIGR02023 103 QKAGAELIHG-LFLKLER-DR------DGVTLTYRTPKKGAGGEKGSVEADVVIGADGANSPV 157 (388)
T ss_pred HhCCCEEEee-EEEEEEE-cC------CeEEEEEEeccccCCCcceEEEeCEEEECCCCCcHH
Confidence 3458999765 5777754 21 2677776521 1122468899999999988765
No 40
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=91.93 E-value=0.33 Score=39.66 Aligned_cols=51 Identities=18% Similarity=0.206 Sum_probs=35.9
Q ss_pred EEEeeCceeceeeCCCCCCCcCceeeEEEEcCC----CCCCCccEEeEEEecCCCcccc
Q psy4053 13 VEIHEGVGFESLLPPPSNQDEEKIGWRAVVSPP----DHPVSQYEFNVLVGADGKRNTL 67 (74)
Q Consensus 13 VeIH~~V~F~~L~eP~~~~~~~~~GWra~~~P~----~h~ls~~eFdvlIgAdG~rn~l 67 (74)
|+++.+.+++++..-. +. ..+.++.++=. +......+-|.||||||.|++.
T Consensus 158 v~v~~g~~v~~~~~~~-~~---~~~V~v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S~V 212 (634)
T PRK08294 158 LEPDYGREFVDLEVDE-EG---EYPVTVTLRRTDGEHEGEEETVRAKYVVGCDGARSRV 212 (634)
T ss_pred eEEEeCcEEEEEEECC-CC---CCCEEEEEEECCCCCCCceEEEEeCEEEECCCCchHH
Confidence 6889999999986422 11 12467777521 3334578899999999999876
No 41
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=91.62 E-value=0.37 Score=35.66 Aligned_cols=46 Identities=26% Similarity=0.289 Sum_probs=34.3
Q ss_pred EeEEEeeCceeceeeCCCCCCCcCceeeEEEEcCCCCCCCccEEeEEEecCCCcccc
Q psy4053 11 HGVEIHEGVGFESLLPPPSNQDEEKIGWRAVVSPPDHPVSQYEFNVLVGADGKRNTL 67 (74)
Q Consensus 11 LGVeIH~~V~F~~L~eP~~~~~~~~~GWra~~~P~~h~ls~~eFdvlIgAdG~rn~l 67 (74)
.|++|+.+...+++.+- ..+|.+.+. +. ..++.|.||+|||.++.+
T Consensus 126 ~gv~i~~~~~v~~i~~~-------~~~v~v~~~--~g--~~~~a~~vV~AdG~~S~v 171 (392)
T PRK08773 126 AGVQLHCPARVVALEQD-------ADRVRLRLD--DG--RRLEAALAIAADGAASTL 171 (392)
T ss_pred CCCEEEcCCeEEEEEec-------CCeEEEEEC--CC--CEEEeCEEEEecCCCchH
Confidence 58999999988888641 126777663 22 257899999999998865
No 42
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=89.71 E-value=0.28 Score=35.84 Aligned_cols=46 Identities=13% Similarity=0.103 Sum_probs=32.8
Q ss_pred EEe-EEEeeCceeceeeCCCCCCCcCceeeEEEEcCCCCCCCccEEeEEEecCCCcccc
Q psy4053 10 VHG-VEIHEGVGFESLLPPPSNQDEEKIGWRAVVSPPDHPVSQYEFNVLVGADGKRNTL 67 (74)
Q Consensus 10 LLG-VeIH~~V~F~~L~eP~~~~~~~~~GWra~~~P~~h~ls~~eFdvlIgAdG~rn~l 67 (74)
-.| |+++ +.+.+++.+ .+ .+|.+.+.-. ..+++|.||+|||.++.+
T Consensus 123 ~~~~v~~~-~~~v~~i~~-~~------~~~~v~~~~g----~~~~a~~vI~adG~~S~v 169 (388)
T PRK07608 123 FQPNLTWF-PARAQGLEV-DP------DAATLTLADG----QVLRADLVVGADGAHSWV 169 (388)
T ss_pred hCCCcEEE-cceeEEEEe-cC------CeEEEEECCC----CEEEeeEEEEeCCCCchH
Confidence 346 8888 888888753 11 2577776422 257899999999998765
No 43
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=88.90 E-value=1.1 Score=33.01 Aligned_cols=44 Identities=23% Similarity=0.348 Sum_probs=31.0
Q ss_pred eEEEeeCceeceeeCCCCCCCcCceeeEEEEcCCCCCCCccEEeEEEecCCCcccc
Q psy4053 12 GVEIHEGVGFESLLPPPSNQDEEKIGWRAVVSPPDHPVSQYEFNVLVGADGKRNTL 67 (74)
Q Consensus 12 GVeIH~~V~F~~L~eP~~~~~~~~~GWra~~~P~~h~ls~~eFdvlIgAdG~rn~l 67 (74)
++. +.+.+..++..- ..+|++.+. +. ..++.|.||+|||.++.+
T Consensus 126 ~~~-~~~~~v~~i~~~-------~~~~~v~~~--~g--~~~~a~~vI~AdG~~S~v 169 (388)
T PRK07494 126 NIT-RFGDEAESVRPR-------EDEVTVTLA--DG--TTLSARLVVGADGRNSPV 169 (388)
T ss_pred CcE-EECCeeEEEEEc-------CCeEEEEEC--CC--CEEEEeEEEEecCCCchh
Confidence 344 778888887531 126887764 22 358899999999998865
No 44
>PF03074 GCS: Glutamate-cysteine ligase; InterPro: IPR004308 This family represents the catalytic subunit of glutamate-cysteine ligase (6.3.2.2 from EC), also known as gamma-glutamylcysteine synthetase (GCS). This enzyme catalyses the rate limiting step in the biosynthesis of glutathione. The eukaryotic enzyme is a dimer of a heavy chain and a light chain with all the catalytic activity exhibited by the heavy chain.; GO: 0004357 glutamate-cysteine ligase activity, 0006750 glutathione biosynthetic process; PDB: 3LVW_A 3LVV_A 3IG8_A 3IG5_A.
Probab=88.00 E-value=0.23 Score=39.58 Aligned_cols=26 Identities=38% Similarity=0.915 Sum_probs=12.9
Q ss_pred eCCCCCCCcCceeeEEEEcCCCCCCCccE
Q psy4053 25 LPPPSNQDEEKIGWRAVVSPPDHPVSQYE 53 (74)
Q Consensus 25 ~eP~~~~~~~~~GWra~~~P~~h~ls~~e 53 (74)
-|||.++ .+|||.|+.|-.=++.++|
T Consensus 180 KpPp~~s---~iGWRVEfR~mEvQlTdfE 205 (371)
T PF03074_consen 180 KPPPPNS---SIGWRVEFRPMEVQLTDFE 205 (371)
T ss_dssp E--TT-T---S--CEEEE---B--SSHHH
T ss_pred cCCCCCC---CCCeeEEeeccceecchHh
Confidence 4666655 5899999999988888887
No 45
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=85.06 E-value=0.54 Score=32.27 Aligned_cols=52 Identities=19% Similarity=0.218 Sum_probs=34.3
Q ss_pred eeeeEEeEEEeeCceeceeeCCCCCCCcCceeeEEEEcCCCCCCCccEEeEEEecCCCcccc
Q psy4053 6 VVNQVHGVEIHEGVGFESLLPPPSNQDEEKIGWRAVVSPPDHPVSQYEFNVLVGADGKRNTL 67 (74)
Q Consensus 6 KVALLLGVeIH~~V~F~~L~eP~~~~~~~~~GWra~~~P~~h~ls~~eFdvlIgAdG~rn~l 67 (74)
+-+.-.||+++.+.+.+++..-.. +++..+.- .-..++.|.||+|||.++.+
T Consensus 99 ~~~~~~gv~~~~~~~v~~~~~~~~-------~~~~~~~~---~~~~~~a~~vv~a~G~~s~~ 150 (295)
T TIGR02032 99 ERAQEAGAELRLGTTVLDVEIHDD-------RVVVIVRG---GEGTVTAKIVIGADGSRSIV 150 (295)
T ss_pred HHHHHcCCEEEeCcEEeeEEEeCC-------EEEEEEcC---ccEEEEeCEEEECCCcchHH
Confidence 334446999999999988864221 34444432 12357899999999987643
No 46
>PRK06185 hypothetical protein; Provisional
Probab=84.75 E-value=2 Score=31.73 Aligned_cols=50 Identities=26% Similarity=0.487 Sum_probs=32.7
Q ss_pred EeEEEeeCceeceeeCCCCCCCcCceeeEEEEcCCCCCCCccEEeEEEecCCCcccc
Q psy4053 11 HGVEIHEGVGFESLLPPPSNQDEEKIGWRAVVSPPDHPVSQYEFNVLVGADGKRNTL 67 (74)
Q Consensus 11 LGVeIH~~V~F~~L~eP~~~~~~~~~GWra~~~P~~h~ls~~eFdvlIgAdG~rn~l 67 (74)
-||+|+.+.+..++..- + +...|.+.+. .+.. ..++.|.||+|||.++.+
T Consensus 122 ~~v~i~~~~~v~~~~~~-~---~~v~~v~~~~--~~g~-~~i~a~~vI~AdG~~S~v 171 (407)
T PRK06185 122 PNFTLRMGAEVTGLIEE-G---GRVTGVRART--PDGP-GEIRADLVVGADGRHSRV 171 (407)
T ss_pred CCcEEEeCCEEEEEEEe-C---CEEEEEEEEc--CCCc-EEEEeCEEEECCCCchHH
Confidence 38999999999998742 1 1122333332 2221 357899999999998854
No 47
>KOG3754|consensus
Probab=83.56 E-value=0.6 Score=39.27 Aligned_cols=26 Identities=38% Similarity=0.915 Sum_probs=21.9
Q ss_pred eCCCCCCCcCceeeEEEEcCCCCCCCccE
Q psy4053 25 LPPPSNQDEEKIGWRAVVSPPDHPVSQYE 53 (74)
Q Consensus 25 ~eP~~~~~~~~~GWra~~~P~~h~ls~~e 53 (74)
-|||.++ .+|||+++.|-.-++.+||
T Consensus 415 KPPpp~s---~iGWRVEFRp~EvQltDFE 440 (640)
T KOG3754|consen 415 KPPPPNS---SIGWRVEFRPMEVQLTDFE 440 (640)
T ss_pred CCcCCCC---CCceeEEeeeeeEEecccc
Confidence 4677666 4799999999999999998
No 48
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=79.79 E-value=0.27 Score=40.88 Aligned_cols=41 Identities=10% Similarity=0.087 Sum_probs=26.6
Q ss_pred eeeeeeEEeEEEeeCceeceeeCCCCCCCcCceeeEEEEcCCCCCCCccEEeEEEecCCCcccc
Q psy4053 4 EYVVNQVHGVEIHEGVGFESLLPPPSNQDEEKIGWRAVVSPPDHPVSQYEFNVLVGADGKRNTL 67 (74)
Q Consensus 4 LLKVALLLGVeIH~~V~F~~L~eP~~~~~~~~~GWra~~~P~~h~ls~~eFdvlIgAdG~rn~l 67 (74)
|++-|.=+||+|+.+.+.+++.+ ...++|+||||||.++++
T Consensus 103 L~e~a~~~GV~i~~g~~v~~i~~-----------------------~~~~~D~VVgADG~~S~v 143 (765)
T PRK08255 103 LQARCEELGVKLVFETEVPDDQA-----------------------LAADADLVIASDGLNSRI 143 (765)
T ss_pred HHHHHHHcCCEEEeCCccCchhh-----------------------hhcCCCEEEEcCCCCHHH
Confidence 33334446888888876554321 014789999999988754
No 49
>PTZ00367 squalene epoxidase; Provisional
Probab=78.78 E-value=4.4 Score=33.15 Aligned_cols=18 Identities=17% Similarity=0.161 Sum_probs=15.3
Q ss_pred CccEEeEEEecCCCcccc
Q psy4053 50 SQYEFNVLVGADGKRNTL 67 (74)
Q Consensus 50 s~~eFdvlIgAdG~rn~l 67 (74)
..++.|.+|||||.++.+
T Consensus 204 ~~~~AdLvVgADG~~S~v 221 (567)
T PTZ00367 204 KVATAPLVVMCDGGMSKF 221 (567)
T ss_pred eEEEeCEEEECCCcchHH
Confidence 357899999999998875
No 50
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=77.69 E-value=1 Score=34.61 Aligned_cols=51 Identities=18% Similarity=0.257 Sum_probs=33.3
Q ss_pred eeeeEEeEEEeeCceeceeeCCCCCCCcCceeeEEEEcCCCCCCCccEEeEEEecCCCcccc
Q psy4053 6 VVNQVHGVEIHEGVGFESLLPPPSNQDEEKIGWRAVVSPPDHPVSQYEFNVLVGADGKRNTL 67 (74)
Q Consensus 6 KVALLLGVeIH~~V~F~~L~eP~~~~~~~~~GWra~~~P~~h~ls~~eFdvlIgAdG~rn~l 67 (74)
+-|.-.|++|+.+...+++.. ++ + .+.. +.-.. ..++.|+||+|||.++.+
T Consensus 116 ~~a~~~Gv~i~~~~~V~~i~~--~~--g---~v~~-v~~~g---~~i~A~~VI~A~G~~s~l 166 (428)
T PRK10157 116 EQAEEAGAQLITGIRVDNLVQ--RD--G---KVVG-VEADG---DVIEAKTVILADGVNSIL 166 (428)
T ss_pred HHHHHCCCEEECCCEEEEEEE--eC--C---EEEE-EEcCC---cEEECCEEEEEeCCCHHH
Confidence 334446999999999999863 11 1 2222 22122 257899999999987755
No 51
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=76.36 E-value=2.3 Score=28.08 Aligned_cols=45 Identities=22% Similarity=0.251 Sum_probs=27.1
Q ss_pred eEEEeeCceeceeeCCCCCCCcCceeeEEEEcCCCCCCCccEEeEEEecCCCcccc
Q psy4053 12 GVEIHEGVGFESLLPPPSNQDEEKIGWRAVVSPPDHPVSQYEFNVLVGADGKRNTL 67 (74)
Q Consensus 12 GVeIH~~V~F~~L~eP~~~~~~~~~GWra~~~P~~h~ls~~eFdvlIgAdG~rn~l 67 (74)
|++|..+++-+++..- ..+|+++++.. ..+++|.||-|.|..+.+
T Consensus 96 ~l~i~~~~~V~~v~~~-------~~~w~v~~~~~----~~~~a~~VVlAtG~~~~p 140 (203)
T PF13738_consen 96 GLEIRFNTRVESVRRD-------GDGWTVTTRDG----RTIRADRVVLATGHYSHP 140 (203)
T ss_dssp TGGEETS--EEEEEEE-------TTTEEEEETTS-----EEEEEEEEE---SSCSB
T ss_pred CcccccCCEEEEEEEe-------ccEEEEEEEec----ceeeeeeEEEeeeccCCC
Confidence 4456666666666542 12599999875 788999999999975443
No 52
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=73.62 E-value=6 Score=33.43 Aligned_cols=42 Identities=24% Similarity=0.278 Sum_probs=29.6
Q ss_pred EeeCceeceeeCCCCCCCcCceeeEEEEcCCCCCCCccEEeEEEecCCCcccc
Q psy4053 15 IHEGVGFESLLPPPSNQDEEKIGWRAVVSPPDHPVSQYEFNVLVGADGKRNTL 67 (74)
Q Consensus 15 IH~~V~F~~L~eP~~~~~~~~~GWra~~~P~~h~ls~~eFdvlIgAdG~rn~l 67 (74)
||.+....++... ..++++.+.- . ..++.|.||||||.++..
T Consensus 209 i~~g~~V~~I~~~-------~d~VtV~~~d--G--~ti~aDlVVGADG~~S~v 250 (668)
T PLN02927 209 IRNESNVVDFEDS-------GDKVTVVLEN--G--QRYEGDLLVGADGIWSKV 250 (668)
T ss_pred EEcCCEEEEEEEe-------CCEEEEEECC--C--CEEEcCEEEECCCCCcHH
Confidence 6778888887531 1267777643 2 457899999999988754
No 53
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=69.64 E-value=6.2 Score=29.80 Aligned_cols=49 Identities=22% Similarity=0.321 Sum_probs=34.2
Q ss_pred eEEeEEEeeCceeceeeCCCCCCCcCceeeEEEEcCCCCCCCccEEeEEEecCCCcccc
Q psy4053 9 QVHGVEIHEGVGFESLLPPPSNQDEEKIGWRAVVSPPDHPVSQYEFNVLVGADGKRNTL 67 (74)
Q Consensus 9 LLLGVeIH~~V~F~~L~eP~~~~~~~~~GWra~~~P~~h~ls~~eFdvlIgAdG~rn~l 67 (74)
-=.|+|++.++...++.. . ..++...+.=.+ -....+++|.|||-+..+
T Consensus 106 ~~aGae~~~~~~~~~~~~-~------~~~~~~~~~~~~---~e~~a~~vI~AdG~~s~l 154 (396)
T COG0644 106 EEAGAELYPGTRVTGVIR-E------DDGVVVGVRAGD---DEVRAKVVIDADGVNSAL 154 (396)
T ss_pred HHcCCEEEeceEEEEEEE-e------CCcEEEEEEcCC---EEEEcCEEEECCCcchHH
Confidence 346999999999999985 1 123444333222 566789999999988765
No 54
>PLN02985 squalene monooxygenase
Probab=65.32 E-value=10 Score=30.32 Aligned_cols=49 Identities=20% Similarity=0.137 Sum_probs=27.6
Q ss_pred eEEEeeCceeceeeCCCCCCCcCceeeEEEEcCCCCCCCccEEeEEEecCCCcccc
Q psy4053 12 GVEIHEGVGFESLLPPPSNQDEEKIGWRAVVSPPDHPVSQYEFNVLVGADGKRNTL 67 (74)
Q Consensus 12 GVeIH~~V~F~~L~eP~~~~~~~~~GWra~~~P~~h~ls~~eFdvlIgAdG~rn~l 67 (74)
||+++.+ +..++++- ++...|-++.. ++...-.++.|.+|+|||.++.+
T Consensus 162 ~V~i~~g-tvv~li~~----~~~v~gV~~~~--~dG~~~~~~AdLVVgADG~~S~v 210 (514)
T PLN02985 162 NVRLEEG-TVKSLIEE----KGVIKGVTYKN--SAGEETTALAPLTVVCDGCYSNL 210 (514)
T ss_pred CeEEEee-eEEEEEEc----CCEEEEEEEEc--CCCCEEEEECCEEEECCCCchHH
Confidence 6787765 35555541 11233444432 23222234569999999998865
No 55
>COG4308 LimA Limonene-1,2-epoxide hydrolase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=64.83 E-value=5.1 Score=28.15 Aligned_cols=28 Identities=29% Similarity=0.472 Sum_probs=22.5
Q ss_pred eeEEEEcCCCCCCCccEEeEE-EecCCCc
Q psy4053 37 GWRAVVSPPDHPVSQYEFNVL-VGADGKR 64 (74)
Q Consensus 37 GWra~~~P~~h~ls~~eFdvl-IgAdG~r 64 (74)
+=+|-+.|...+.+.+|||++ |+|||.+
T Consensus 51 ~~ia~l~~~~~~~~~~ef~I~riAadg~~ 79 (130)
T COG4308 51 ETIALLRPRMAGILGFEFKILRIAADGGA 79 (130)
T ss_pred hhhhhhccccCCcceeEEEEEEEecccce
Confidence 345566677779999999998 8999976
No 56
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=60.57 E-value=7.2 Score=28.28 Aligned_cols=45 Identities=20% Similarity=0.195 Sum_probs=33.1
Q ss_pred eeEEeEEEeeCceeceeeCCCCCCCcCceeeEEEEcCCCCCCCccEEeEEEecCCCc
Q psy4053 8 NQVHGVEIHEGVGFESLLPPPSNQDEEKIGWRAVVSPPDHPVSQYEFNVLVGADGKR 64 (74)
Q Consensus 8 ALLLGVeIH~~V~F~~L~eP~~~~~~~~~GWra~~~P~~h~ls~~eFdvlIgAdG~r 64 (74)
|.-.|++|+.+.+.+++.. .. .+|++... +. .++.|.||.|+|-.
T Consensus 159 ~~~~gv~i~~~~~v~~i~~-~~------~~~~v~~~--~g---~~~a~~vV~A~G~~ 203 (376)
T PRK11259 159 AREAGAELLFNEPVTAIEA-DG------DGVTVTTA--DG---TYEAKKLVVSAGAW 203 (376)
T ss_pred HHHCCCEEECCCEEEEEEe-eC------CeEEEEeC--CC---EEEeeEEEEecCcc
Confidence 4446999999999999874 11 16776643 22 68999999999975
No 57
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=60.35 E-value=5 Score=29.22 Aligned_cols=60 Identities=20% Similarity=0.215 Sum_probs=37.6
Q ss_pred eeeeeeEEeEEEeeCceeceeeCCCCCCCcCceeeEEEEcCC--C--C-CCCccEEeEEEecCCCccc
Q psy4053 4 EYVVNQVHGVEIHEGVGFESLLPPPSNQDEEKIGWRAVVSPP--D--H-PVSQYEFNVLVGADGKRNT 66 (74)
Q Consensus 4 LLKVALLLGVeIH~~V~F~~L~eP~~~~~~~~~GWra~~~P~--~--h-~ls~~eFdvlIgAdG~rn~ 66 (74)
|++-|.-.|++|+.++...++..- .+ +...|-.+...+- + | -...++.++||.|+|....
T Consensus 110 L~~~A~~~Gv~I~~~t~V~dl~~~-~~--g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~ 174 (257)
T PRK04176 110 LAAAAIDAGAKIFNGVSVEDVILR-ED--PRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAE 174 (257)
T ss_pred HHHHHHHcCCEEEcCceeceeeEe-CC--CcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcH
Confidence 334455679999999999999741 11 1345555443331 1 1 1235788999999997544
No 58
>PF08848 DUF1818: Domain of unknown function (DUF1818); InterPro: IPR014947 This entry represents a small family of uncharacterised cyanobacterial proteins. ; PDB: 2IT9_A 2NVN_A.
Probab=60.02 E-value=6.1 Score=27.13 Aligned_cols=23 Identities=35% Similarity=0.601 Sum_probs=16.8
Q ss_pred ceeeEEEEcCCCCCCCccEEeEEEecCC
Q psy4053 35 KIGWRAVVSPPDHPVSQYEFNVLVGADG 62 (74)
Q Consensus 35 ~~GWra~~~P~~h~ls~~eFdvlIgAdG 62 (74)
..|||.-..|+. -+|-.|||.|+
T Consensus 4 G~GWRLg~dp~~-----~~f~~LIGge~ 26 (117)
T PF08848_consen 4 GPGWRLGWDPSR-----GEFCGLIGGED 26 (117)
T ss_dssp ETTEEEEEETT------SSS-EEEE-SS
T ss_pred CCCeEEeECCCC-----CCCCEEEccCc
Confidence 579999999953 47889999775
No 59
>PRK10015 oxidoreductase; Provisional
Probab=59.01 E-value=14 Score=28.52 Aligned_cols=49 Identities=27% Similarity=0.350 Sum_probs=32.0
Q ss_pred eeEEeEEEeeCceeceeeCCCCCCCcCceeeEEEEcCCCCCCCccEEeEEEecCCCcccc
Q psy4053 8 NQVHGVEIHEGVGFESLLPPPSNQDEEKIGWRAVVSPPDHPVSQYEFNVLVGADGKRNTL 67 (74)
Q Consensus 8 ALLLGVeIH~~V~F~~L~eP~~~~~~~~~GWra~~~P~~h~ls~~eFdvlIgAdG~rn~l 67 (74)
|.-.|++|+.++.-+++.. .. + ++..... .+ ..++.|++|+|||.++.+
T Consensus 118 a~~~Gv~i~~~~~V~~i~~-~~---~---~v~~v~~-~~---~~i~A~~VI~AdG~~s~v 166 (429)
T PRK10015 118 AEQAGAQFIPGVRVDALVR-EG---N---KVTGVQA-GD---DILEANVVILADGVNSML 166 (429)
T ss_pred HHHcCCEEECCcEEEEEEE-eC---C---EEEEEEe-CC---eEEECCEEEEccCcchhh
Confidence 3446999999988888763 11 1 2332111 11 257889999999997766
No 60
>PLN02463 lycopene beta cyclase
Probab=58.28 E-value=25 Score=27.84 Aligned_cols=46 Identities=15% Similarity=0.224 Sum_probs=31.1
Q ss_pred EeEEEeeCceeceeeCCCCCCCcCceeeEEEEcCCCCCCCccEEeEEEecCCCccccC
Q psy4053 11 HGVEIHEGVGFESLLPPPSNQDEEKIGWRAVVSPPDHPVSQYEFNVLVGADGKRNTLE 68 (74)
Q Consensus 11 LGVeIH~~V~F~~L~eP~~~~~~~~~GWra~~~P~~h~ls~~eFdvlIgAdG~rn~l~ 68 (74)
.||+++. ...+++.+- + .++.+.+.- . ..++.|.||+|||-++.+.
T Consensus 127 ~GV~~~~-~~V~~I~~~-~------~~~~V~~~d--G--~~i~A~lVI~AdG~~s~l~ 172 (447)
T PLN02463 127 NGVQFHQ-AKVKKVVHE-E------SKSLVVCDD--G--VKIQASLVLDATGFSRCLV 172 (447)
T ss_pred cCCEEEe-eEEEEEEEc-C------CeEEEEECC--C--CEEEcCEEEECcCCCcCcc
Confidence 4788874 466666531 1 257777653 2 3689999999999988754
No 61
>KOG1700|consensus
Probab=57.31 E-value=1.3 Score=31.84 Aligned_cols=60 Identities=18% Similarity=0.160 Sum_probs=43.9
Q ss_pred eeeeeeEE--eEEEeeCceeceeeCCCCCCCcCceeeEEEEcCCCCCCCccEE-eEEEecCCCccccCCccc
Q psy4053 4 EYVVNQVH--GVEIHEGVGFESLLPPPSNQDEEKIGWRAVVSPPDHPVSQYEF-NVLVGADGKRNTLEGFKS 72 (74)
Q Consensus 4 LLKVALLL--GVeIH~~V~F~~L~eP~~~~~~~~~GWra~~~P~~h~ls~~eF-dvlIgAdG~rn~l~GF~r 72 (74)
+.+++++. |+.+|..+.+......+-+. .+|++ .+.+.-.+. |+-+.+++..+...||++
T Consensus 17 vy~~e~~~~~g~~~hk~c~~c~~~~k~l~~----~~~~~-----~e~~~yc~~~~~~~~~~~~~~~~~~~~~ 79 (200)
T KOG1700|consen 17 VYFVEKVQKDGVDFHKECFKCEKCKKTLTL----SGYSE-----HEGVPYCKNCHVAQFGPKGGGFGKGFQK 79 (200)
T ss_pred chHHHHHhccCcchhhhHHhcccccccccc----ccccc-----cccccccccchHhhhCcccccccccccc
Confidence 45667777 99999999998877655543 46887 333444444 999999999999999874
No 62
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=55.42 E-value=41 Score=23.16 Aligned_cols=48 Identities=17% Similarity=0.169 Sum_probs=30.7
Q ss_pred EeEEEeeCceeceeeCCCCCCCcCceeeEEEEcCCCCCCCccEEeEEEecCCCccccCCc
Q psy4053 11 HGVEIHEGVGFESLLPPPSNQDEEKIGWRAVVSPPDHPVSQYEFNVLVGADGKRNTLEGF 70 (74)
Q Consensus 11 LGVeIH~~V~F~~L~eP~~~~~~~~~GWra~~~P~~h~ls~~eFdvlIgAdG~rn~l~GF 70 (74)
.|++++. .+-.++.+ .. .+|.++.. +. ..+++|.||-|.|.+...+++
T Consensus 70 ~gv~~~~-~~v~~v~~-~~------~~~~v~~~--~~--~~~~~d~liiAtG~~~~~~~i 117 (300)
T TIGR01292 70 FGAEIIY-EEVIKVDL-SD------RPFKVKTG--DG--KEYTAKAVIIATGASARKLGI 117 (300)
T ss_pred cCCeEEE-EEEEEEEe-cC------CeeEEEeC--CC--CEEEeCEEEECCCCCcccCCC
Confidence 4677776 55555542 21 25777654 21 368999999999987764433
No 63
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=51.90 E-value=16 Score=28.69 Aligned_cols=50 Identities=20% Similarity=0.178 Sum_probs=29.7
Q ss_pred eeEEeEEEeeCceeceeeCCCCCCCcCceeeEEEEcCCCCCCCccEEeEEEecCCCcccc
Q psy4053 8 NQVHGVEIHEGVGFESLLPPPSNQDEEKIGWRAVVSPPDHPVSQYEFNVLVGADGKRNTL 67 (74)
Q Consensus 8 ALLLGVeIH~~V~F~~L~eP~~~~~~~~~GWra~~~P~~h~ls~~eFdvlIgAdG~rn~l 67 (74)
+.=+||+||.+.+.+++..-. ..-|++++. .=..|++|.||=|.|..+.+
T Consensus 119 l~~~gv~i~~~~~V~~i~~~~------~~~f~v~~~----~~~~~~a~~vILAtGG~S~p 168 (409)
T PF03486_consen 119 LKRLGVEIHFNTRVKSIEKKE------DGVFGVKTK----NGGEYEADAVILATGGKSYP 168 (409)
T ss_dssp HHHHT-EEE-S--EEEEEEET------TEEEEEEET----TTEEEEESEEEE----SSSG
T ss_pred HHHcCCEEEeCCEeeeeeecC------CceeEeecc----CcccccCCEEEEecCCCCcc
Confidence 334699999999999995311 113888883 23489999999999998866
No 64
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=48.93 E-value=12 Score=28.31 Aligned_cols=57 Identities=14% Similarity=0.156 Sum_probs=37.0
Q ss_pred eeeeeEEeEEEeeCceeceeeCCCCCCCcCceeeEEEEcCCCCCCCccEEeEEEecCCCccc
Q psy4053 5 YVVNQVHGVEIHEGVGFESLLPPPSNQDEEKIGWRAVVSPPDHPVSQYEFNVLVGADGKRNT 66 (74)
Q Consensus 5 LKVALLLGVeIH~~V~F~~L~eP~~~~~~~~~GWra~~~P~~h~ls~~eFdvlIgAdG~rn~ 66 (74)
.+.|.-.||+|+.+..-.+|+. +.++...|.+++. .+.....+..+.||-|.|.-..
T Consensus 137 ~~~~~~~gv~i~~~~~v~~l~~---~~~g~v~Gv~~~~--~~g~~~~~~a~~VVlAtGg~~~ 193 (439)
T TIGR01813 137 YKKAKKEGIDTRLNSKVEDLIQ---DDQGTVVGVVVKG--KGKGIYIKAAKAVVLATGGFGS 193 (439)
T ss_pred HHHHHHcCCEEEeCCEeeEeEE---CCCCcEEEEEEEe--CCCeEEEEecceEEEecCCCCC
Confidence 4445567999999999999984 1223356776653 3333334566888888886443
No 65
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=48.42 E-value=34 Score=27.10 Aligned_cols=48 Identities=15% Similarity=0.188 Sum_probs=30.8
Q ss_pred EeEE--EeeCceeceeeCCCCCCCcCceeeEEEEcCCCCCCCccEEeEEEecCCCcc
Q psy4053 11 HGVE--IHEGVGFESLLPPPSNQDEEKIGWRAVVSPPDHPVSQYEFNVLVGADGKRN 65 (74)
Q Consensus 11 LGVe--IH~~V~F~~L~eP~~~~~~~~~GWra~~~P~~h~ls~~eFdvlIgAdG~rn 65 (74)
.|++ |+.+.+=.++- |.. ..|++.+.-.+.-...++||.||-|.|..+
T Consensus 124 fgl~~~I~~~t~V~~V~-~~~------~~w~V~~~~~~~~~~~~~~d~VIvAtG~~~ 173 (461)
T PLN02172 124 FKIEEMVRFETEVVRVE-PVD------GKWRVQSKNSGGFSKDEIFDAVVVCNGHYT 173 (461)
T ss_pred cCCcceEEecCEEEEEe-ecC------CeEEEEEEcCCCceEEEEcCEEEEeccCCC
Confidence 4555 66666666654 321 269998874333334678999999999544
No 66
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=48.15 E-value=47 Score=25.39 Aligned_cols=45 Identities=24% Similarity=0.275 Sum_probs=33.3
Q ss_pred EeEEEeeCceeceeeCCCCCCCcCceeeEEEEcCCCCCCCccEEeEEEecCCCcccc
Q psy4053 11 HGVEIHEGVGFESLLPPPSNQDEEKIGWRAVVSPPDHPVSQYEFNVLVGADGKRNTL 67 (74)
Q Consensus 11 LGVeIH~~V~F~~L~eP~~~~~~~~~GWra~~~P~~h~ls~~eFdvlIgAdG~rn~l 67 (74)
.||+|+.+....++.. .+ .+|.++.. . ..++.|.||-|.|..+.+
T Consensus 118 ~gv~i~~~~~V~~i~~-~~------~~~~v~~~--~---~~i~ad~VIlAtG~~s~p 162 (400)
T TIGR00275 118 LGVEILTNSKVKSIKK-DD------NGFGVETS--G---GEYEADKVILATGGLSYP 162 (400)
T ss_pred CCCEEEeCCEEEEEEe-cC------CeEEEEEC--C---cEEEcCEEEECCCCcccC
Confidence 5899999999998853 21 26887763 2 247899999999987654
No 67
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=47.47 E-value=34 Score=26.89 Aligned_cols=52 Identities=17% Similarity=0.008 Sum_probs=36.7
Q ss_pred eeeeeeEEeEEEeeCceeceeeCCCCCCCcCceeeEEEEcCCCCCCCccEEeEEEecCCCcccc
Q psy4053 4 EYVVNQVHGVEIHEGVGFESLLPPPSNQDEEKIGWRAVVSPPDHPVSQYEFNVLVGADGKRNTL 67 (74)
Q Consensus 4 LLKVALLLGVeIH~~V~F~~L~eP~~~~~~~~~GWra~~~P~~h~ls~~eFdvlIgAdG~rn~l 67 (74)
|++-+--+||+||.+.+-+++ ++ .+|..++. .. -..+++|.||=|.|....+
T Consensus 92 L~~~l~~~gV~i~~~~~V~~i----~~-----~~~~v~~~-~~--~~~~~a~~vIlAtGG~s~p 143 (376)
T TIGR03862 92 WLKRLAEQGVQFHTRHRWIGW----QG-----GTLRFETP-DG--QSTIEADAVVLALGGASWS 143 (376)
T ss_pred HHHHHHHCCCEEEeCCEEEEE----eC-----CcEEEEEC-CC--ceEEecCEEEEcCCCcccc
Confidence 334444589999999999998 11 15887773 11 1248899999999988754
No 68
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=47.45 E-value=15 Score=27.26 Aligned_cols=55 Identities=24% Similarity=0.255 Sum_probs=37.5
Q ss_pred eeeeeeEEeEEEeeCceeceeeCCCCCCCcCceeeEEEEcCCC-CCCCccEEeEEEecCCCcc
Q psy4053 4 EYVVNQVHGVEIHEGVGFESLLPPPSNQDEEKIGWRAVVSPPD-HPVSQYEFNVLVGADGKRN 65 (74)
Q Consensus 4 LLKVALLLGVeIH~~V~F~~L~eP~~~~~~~~~GWra~~~P~~-h~ls~~eFdvlIgAdG~rn 65 (74)
|++.|.-.|++|+.+.+..++.. . ..+|.+.+...+ ++-..++.|.||-|.|-..
T Consensus 203 l~~~a~~~G~~i~~~~~V~~i~~-~------~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s 258 (410)
T PRK12409 203 LAAACARLGVQFRYGQEVTSIKT-D------GGGVVLTVQPSAEHPSRTLEFDGVVVCAGVGS 258 (410)
T ss_pred HHHHHHhCCCEEEcCCEEEEEEE-e------CCEEEEEEEcCCCCccceEecCEEEECCCcCh
Confidence 34556667999999999999863 1 125877665432 1123578999999999653
No 69
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=46.94 E-value=18 Score=27.02 Aligned_cols=45 Identities=24% Similarity=0.293 Sum_probs=32.5
Q ss_pred eEEeEEEeeCceeceeeCCCCCCCcCceeeEEEEcCCCCCCCccEEeEEEecCCCcc
Q psy4053 9 QVHGVEIHEGVGFESLLPPPSNQDEEKIGWRAVVSPPDHPVSQYEFNVLVGADGKRN 65 (74)
Q Consensus 9 LLLGVeIH~~V~F~~L~eP~~~~~~~~~GWra~~~P~~h~ls~~eFdvlIgAdG~rn 65 (74)
.-.|++|+.+.+-.++.. .. .+|+++.. +. .+..|.+|.|+|-..
T Consensus 160 ~~~Gv~i~~~~~V~~i~~-~~------~~~~V~~~--~g---~i~ad~vV~A~G~~s 204 (393)
T PRK11728 160 QARGGEIRLGAEVTALDE-HA------NGVVVRTT--QG---EYEARTLINCAGLMS 204 (393)
T ss_pred HhCCCEEEcCCEEEEEEe-cC------CeEEEEEC--CC---EEEeCEEEECCCcch
Confidence 346999999998888763 21 15776653 22 688999999999764
No 70
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=44.35 E-value=63 Score=23.71 Aligned_cols=44 Identities=11% Similarity=-0.057 Sum_probs=29.1
Q ss_pred EeEEEeeCceeceeeCCCCCCCcCceeeEEEEcCCCCCCCccEEeEEEecCCCcc
Q psy4053 11 HGVEIHEGVGFESLLPPPSNQDEEKIGWRAVVSPPDHPVSQYEFNVLVGADGKRN 65 (74)
Q Consensus 11 LGVeIH~~V~F~~L~eP~~~~~~~~~GWra~~~P~~h~ls~~eFdvlIgAdG~rn 65 (74)
.|++++.+ ....+.+- . ..+|+..+.- . ..++.|.||+|||.++
T Consensus 98 ~gv~~~~~-~v~~i~~~-~-----~~~~~v~~~~--g--~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 98 GGVLWLER-KAIHAEAD-G-----VALSTVYCAG--G--QRIQARLVIDARGFGP 141 (388)
T ss_pred cCcEEEcc-EEEEEEec-C-----CceeEEEeCC--C--CEEEeCEEEECCCCch
Confidence 47777643 55555431 1 2368877652 2 4689999999999876
No 71
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=44.29 E-value=53 Score=24.40 Aligned_cols=45 Identities=22% Similarity=0.316 Sum_probs=32.2
Q ss_pred EeEEEeeCceeceeeCCCCCCCcCceeeEEEEcCCCCCCCccEEeEEEecCCCccc
Q psy4053 11 HGVEIHEGVGFESLLPPPSNQDEEKIGWRAVVSPPDHPVSQYEFNVLVGADGKRNT 66 (74)
Q Consensus 11 LGVeIH~~V~F~~L~eP~~~~~~~~~GWra~~~P~~h~ls~~eFdvlIgAdG~rn~ 66 (74)
.||+|+.+.+..++.. .+ .+|.+.+. +. ...++|.+|-|.|.+..
T Consensus 196 ~gV~i~~~~~v~~i~~-~~------~~~~v~~~--~g--~~i~~D~vI~a~G~~p~ 240 (377)
T PRK04965 196 MGVHLLLKSQLQGLEK-TD------SGIRATLD--SG--RSIEVDAVIAAAGLRPN 240 (377)
T ss_pred CCCEEEECCeEEEEEc-cC------CEEEEEEc--CC--cEEECCEEEECcCCCcc
Confidence 5899999998888763 11 25776653 22 35789999999997643
No 72
>cd01289 FabA_like Domain of unknown function, appears to be related to a diverse group of beta-hydroxydecanoyl ACP dehydratases (FabA) and beta-hydroxyacyl ACP dehydratases (FabZ). This group appears to lack the conserved active site histidine of FabA and FabZ.
Probab=44.11 E-value=67 Score=21.14 Aligned_cols=49 Identities=10% Similarity=-0.126 Sum_probs=31.4
Q ss_pred eeeeEEeEEEeeCceeceeeCCCCCCCcCceeeEEEEcCCCCCC-CccEEeEEEecCCC
Q psy4053 6 VVNQVHGVEIHEGVGFESLLPPPSNQDEEKIGWRAVVSPPDHPV-SQYEFNVLVGADGK 63 (74)
Q Consensus 6 KVALLLGVeIH~~V~F~~L~eP~~~~~~~~~GWra~~~P~~h~l-s~~eFdvlIgAdG~ 63 (74)
|+..|+|++ ++.|..-+.|.+|+- +.++.-...-- .-+.|++.+-.||+
T Consensus 76 ~~g~l~~i~---~~~f~~~v~p~Gd~l------~i~~~~~~~~~~~~~~~~~~~~v~~~ 125 (138)
T cd01289 76 RPGFLLGSR---KYEAHVDRFDLGSTL------LIVVAELLQGDSGLGVFECTIEDQGG 125 (138)
T ss_pred CcEEEEEEE---EEEEEcceeCCCCee------EEEeeeeeeCCCcEEEEEEEEEECCE
Confidence 578899998 999999887766543 33333221111 34567777777764
No 73
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=42.99 E-value=64 Score=24.86 Aligned_cols=52 Identities=27% Similarity=0.261 Sum_probs=34.9
Q ss_pred EeEEEeeCceeceeeCCCCCCCcCceeeEEEEcCCCCCCCccEEeEEEecCCCccccCC
Q psy4053 11 HGVEIHEGVGFESLLPPPSNQDEEKIGWRAVVSPPDHPVSQYEFNVLVGADGKRNTLEG 69 (74)
Q Consensus 11 LGVeIH~~V~F~~L~eP~~~~~~~~~GWra~~~P~~h~ls~~eFdvlIgAdG~rn~l~G 69 (74)
.||+||.+..-+++.. .. .+.++.+.-.+......++|.||-|-|.+...++
T Consensus 226 ~gV~i~~~~~v~~i~~-~~------~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~~ 277 (466)
T PRK07818 226 LGVKILTGTKVESIDD-NG------SKVTVTVSKKDGKAQELEADKVLQAIGFAPRVEG 277 (466)
T ss_pred CCCEEEECCEEEEEEE-eC------CeEEEEEEecCCCeEEEEeCEEEECcCcccCCCC
Confidence 4899999999888853 11 1355554322333346889999999998866553
No 74
>PF13915 DUF4210: Domain of unknown function (DUF4210)
Probab=41.30 E-value=32 Score=21.49 Aligned_cols=20 Identities=20% Similarity=0.391 Sum_probs=14.5
Q ss_pred CCCccE-EeEEEecCCCcccc
Q psy4053 48 PVSQYE-FNVLVGADGKRNTL 67 (74)
Q Consensus 48 ~ls~~e-FdvlIgAdG~rn~l 67 (74)
|....+ |.+.|||.|+...+
T Consensus 18 ps~~i~GF~a~igvsG~~~cP 38 (66)
T PF13915_consen 18 PSKPIDGFTAEIGVSGSGFCP 38 (66)
T ss_pred CCcccCCeEEEEEccccccCC
Confidence 344556 99999999995444
No 75
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=40.27 E-value=20 Score=28.14 Aligned_cols=51 Identities=20% Similarity=0.138 Sum_probs=35.0
Q ss_pred eeeeEEeEEEeeCceeceeeCCCCCCCcCceeeEEEEcCCCCCCCccEEeEEEecCCC
Q psy4053 6 VVNQVHGVEIHEGVGFESLLPPPSNQDEEKIGWRAVVSPPDHPVSQYEFNVLVGADGK 63 (74)
Q Consensus 6 KVALLLGVeIH~~V~F~~L~eP~~~~~~~~~GWra~~~P~~h~ls~~eFdvlIgAdG~ 63 (74)
+-|.-.|++|+.+.+-.++..- ..+|.+.+.-.......+..+.||.|+|-
T Consensus 163 ~~a~~~Ga~i~~~~~V~~i~~~-------~~~~~v~~~~~~g~~~~i~a~~VVnAaG~ 213 (502)
T PRK13369 163 LDAAERGATILTRTRCVSARRE-------GGLWRVETRDADGETRTVRARALVNAAGP 213 (502)
T ss_pred HHHHHCCCEEecCcEEEEEEEc-------CCEEEEEEEeCCCCEEEEEecEEEECCCc
Confidence 4455679999999988888641 12588776543222234678999999995
No 76
>KOG3855|consensus
Probab=39.51 E-value=49 Score=27.65 Aligned_cols=31 Identities=23% Similarity=0.379 Sum_probs=25.3
Q ss_pred eeeEEEEcCCCCCCCccEEeEEEecCCCccccC
Q psy4053 36 IGWRAVVSPPDHPVSQYEFNVLVGADGKRNTLE 68 (74)
Q Consensus 36 ~GWra~~~P~~h~ls~~eFdvlIgAdG~rn~l~ 68 (74)
.|.+.+++=.++. .|.-|.||||||.++...
T Consensus 190 n~~~~~i~l~dg~--~~~~~LLigAdg~Ns~vR 220 (481)
T KOG3855|consen 190 NGMWFHITLTDGI--NFATDLLIGADGFNSVVR 220 (481)
T ss_pred CcceEEEEeccCc--eeeeceeeccccccchhh
Confidence 3677777777887 889999999999987654
No 77
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=38.84 E-value=35 Score=27.79 Aligned_cols=49 Identities=20% Similarity=0.235 Sum_probs=33.3
Q ss_pred eeeeeEEeEEEeeCceeceeeCCCCCCCcCceeeEEEEcCCCCCCCccEEeEEEecCCCcc
Q psy4053 5 YVVNQVHGVEIHEGVGFESLLPPPSNQDEEKIGWRAVVSPPDHPVSQYEFNVLVGADGKRN 65 (74)
Q Consensus 5 LKVALLLGVeIH~~V~F~~L~eP~~~~~~~~~GWra~~~P~~h~ls~~eFdvlIgAdG~rn 65 (74)
++-|.- |++|+.+.+.+++.. . ..+|++++. +. ..++.|.||.|+|-..
T Consensus 415 ~~~a~~-Gv~i~~~~~V~~i~~-~------~~~~~v~t~--~g--~~~~ad~VV~A~G~~s 463 (662)
T PRK01747 415 LALAGQ-QLTIHFGHEVARLER-E------DDGWQLDFA--GG--TLASAPVVVLANGHDA 463 (662)
T ss_pred HHhccc-CcEEEeCCEeeEEEE-e------CCEEEEEEC--CC--cEEECCEEEECCCCCc
Confidence 444555 999999999998864 1 126886542 22 2346899999999754
No 78
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=37.44 E-value=28 Score=26.48 Aligned_cols=44 Identities=14% Similarity=0.128 Sum_probs=28.1
Q ss_pred EEEeeCceeceeeCCCCCCCcCceeeEEEEcCC-CCCCCccEEeEEEecCC
Q psy4053 13 VEIHEGVGFESLLPPPSNQDEEKIGWRAVVSPP-DHPVSQYEFNVLVGADG 62 (74)
Q Consensus 13 VeIH~~V~F~~L~eP~~~~~~~~~GWra~~~P~-~h~ls~~eFdvlIgAdG 62 (74)
+.|+.+.+-++...- ++ .+|++.+... ++.-...++|+||-|.|
T Consensus 294 ~~l~~~~~v~~~~~~-~~-----~~~~l~~~~~~~~~~~~~~~D~VilATG 338 (341)
T PF13434_consen 294 LRLLPNTEVTSAEQD-GD-----GGVRLTLRHRQTGEEETLEVDAVILATG 338 (341)
T ss_dssp SEEETTEEEEEEEEE-S------SSEEEEEEETTT--EEEEEESEEEE---
T ss_pred eEEeCCCEEEEEEEC-CC-----CEEEEEEEECCCCCeEEEecCEEEEcCC
Confidence 456666666666542 21 1799999984 67788889999999987
No 79
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=35.53 E-value=1e+02 Score=24.32 Aligned_cols=47 Identities=15% Similarity=0.013 Sum_probs=32.4
Q ss_pred EeEEEeeCceeceeeCCCCCCCcCceeeEEEEcCCCCCCCccEEeEEEecCCCccccC
Q psy4053 11 HGVEIHEGVGFESLLPPPSNQDEEKIGWRAVVSPPDHPVSQYEFNVLVGADGKRNTLE 68 (74)
Q Consensus 11 LGVeIH~~V~F~~L~eP~~~~~~~~~GWra~~~P~~h~ls~~eFdvlIgAdG~rn~l~ 68 (74)
+|++++.+..-.++.. .+ ..|.+.+.-. ..+.+|.||-|+|.+...+
T Consensus 279 ~gv~i~~~~~V~~I~~-~~------~~~~V~~~~g----~~i~a~~vViAtG~~~r~~ 325 (517)
T PRK15317 279 YDVDIMNLQRASKLEP-AA------GLIEVELANG----AVLKAKTVILATGARWRNM 325 (517)
T ss_pred CCCEEEcCCEEEEEEe-cC------CeEEEEECCC----CEEEcCEEEECCCCCcCCC
Confidence 5788887777777643 11 2688776422 3688999999999876543
No 80
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=34.95 E-value=15 Score=28.84 Aligned_cols=56 Identities=23% Similarity=0.244 Sum_probs=33.4
Q ss_pred eeeeeeeEEeEEEeeCceeceee-CCCCCCCcCceeeEEEEcCCCCCCCccEEeEEEecCCCccccCC
Q psy4053 3 IEYVVNQVHGVEIHEGVGFESLL-PPPSNQDEEKIGWRAVVSPPDHPVSQYEFNVLVGADGKRNTLEG 69 (74)
Q Consensus 3 ILLKVALLLGVeIH~~V~F~~L~-eP~~~~~~~~~GWra~~~P~~h~ls~~eFdvlIgAdG~rn~l~G 69 (74)
+|++.|.=.||+++.+.- .+.. .+ .|+-..+.=.+. ..++.|.+|-|+|.+..|.+
T Consensus 159 ~L~~~A~~~Gv~~~~g~V-~~v~~~~--------~g~i~~v~~~~g--~~i~ad~~IDASG~~s~L~~ 215 (454)
T PF04820_consen 159 FLRRHAEERGVEVIEGTV-VDVELDE--------DGRITAVRLDDG--RTIEADFFIDASGRRSLLAR 215 (454)
T ss_dssp HHHHHHHHTT-EEEET-E-EEEEE-T--------TSEEEEEEETTS--EEEEESEEEE-SGGG-CCCC
T ss_pred HHHHHHhcCCCEEEeCEE-EEEEEcC--------CCCEEEEEECCC--CEEEEeEEEECCCccchhhH
Confidence 366777778999988852 3332 22 155444443332 36889999999999888743
No 81
>PRK05363 TMAO/DMSO reductase; Reviewed
Probab=34.89 E-value=62 Score=25.48 Aligned_cols=53 Identities=26% Similarity=0.355 Sum_probs=37.1
Q ss_pred eeCceeceeeCCCCCCCc--CceeeEEEEcCC-CCCCCccEEeEEEecCC----CccccC
Q psy4053 16 HEGVGFESLLPPPSNQDE--EKIGWRAVVSPP-DHPVSQYEFNVLVGADG----KRNTLE 68 (74)
Q Consensus 16 H~~V~F~~L~eP~~~~~~--~~~GWra~~~P~-~h~ls~~eFdvlIgAdG----~rn~l~ 68 (74)
....+|..=.++.-++.. ..-|+-|.+-|. +||-....-.-.||.+| ||-|+.
T Consensus 239 I~~Ie~~~~~~~g~We~~~~~eygfyanvnp~v~hPrwsqa~er~ig~~~~~~~r~~tl~ 298 (319)
T PRK05363 239 IVRIRLTEEQPPTTWNLLAPNEYGFYANVNPNVDHPRWSQATERRIGEGGLFAERRPTLM 298 (319)
T ss_pred eeEEEEEeCCCCCchhccCccccceeeecCCCCCCCccccchhceeccCCcccccccccc
Confidence 445566664444333322 245788999998 89999999999999865 777774
No 82
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=34.41 E-value=27 Score=27.63 Aligned_cols=53 Identities=9% Similarity=0.080 Sum_probs=36.2
Q ss_pred eeeeEEeEEEeeCceeceeeCCCCCCCcCceeeEEEEcCCCCCCCccEEeEEEecCCCc
Q psy4053 6 VVNQVHGVEIHEGVGFESLLPPPSNQDEEKIGWRAVVSPPDHPVSQYEFNVLVGADGKR 64 (74)
Q Consensus 6 KVALLLGVeIH~~V~F~~L~eP~~~~~~~~~GWra~~~P~~h~ls~~eFdvlIgAdG~r 64 (74)
+-+.-.||+|+.+...++|+. + ++...|+.++..- .....+..|.||-|.|.-
T Consensus 198 ~~~~~~gv~i~~~t~v~~l~~--~--~g~V~Gv~~~~~~--g~~~~i~a~~VVlAtGG~ 250 (506)
T PRK06481 198 KNVQERKIPLFVNADVTKITE--K--DGKVTGVKVKING--KETKTISSKAVVVTTGGF 250 (506)
T ss_pred HHHHHcCCeEEeCCeeEEEEe--c--CCEEEEEEEEeCC--CeEEEEecCeEEEeCCCc
Confidence 334446999999999999984 2 2346788887532 223346678888888854
No 83
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=34.08 E-value=1.1e+02 Score=23.40 Aligned_cols=47 Identities=17% Similarity=0.209 Sum_probs=33.2
Q ss_pred EeEEEeeCceeceeeCCCCCCCcCceeeEEEEcCCCCCCCccEEeEEEecCCCccccC
Q psy4053 11 HGVEIHEGVGFESLLPPPSNQDEEKIGWRAVVSPPDHPVSQYEFNVLVGADGKRNTLE 68 (74)
Q Consensus 11 LGVeIH~~V~F~~L~eP~~~~~~~~~GWra~~~P~~h~ls~~eFdvlIgAdG~rn~l~ 68 (74)
.||+|+.+....++.. .+ .++.+++. +. ..+++|.+|-|.|++...+
T Consensus 229 ~gI~v~~~~~v~~i~~-~~------~~~~v~~~--~g--~~i~~D~vi~a~G~~p~~~ 275 (461)
T PRK05249 229 SGVTIRHNEEVEKVEG-GD------DGVIVHLK--SG--KKIKADCLLYANGRTGNTD 275 (461)
T ss_pred cCCEEEECCEEEEEEE-eC------CeEEEEEC--CC--CEEEeCEEEEeecCCcccc
Confidence 5899999999888752 21 15666653 21 2588999999999886544
No 84
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=33.82 E-value=89 Score=25.83 Aligned_cols=34 Identities=18% Similarity=0.289 Sum_probs=29.9
Q ss_pred eEEEEcCC-CCCCCccEEeEEEecCCCccccCCcc
Q psy4053 38 WRAVVSPP-DHPVSQYEFNVLVGADGKRNTLEGFK 71 (74)
Q Consensus 38 Wra~~~P~-~h~ls~~eFdvlIgAdG~rn~l~GF~ 71 (74)
.++.++-. ++.....+-|+||-|.|=++.+|.|-
T Consensus 312 ~~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P~fL 346 (436)
T COG3486 312 YRLTLRHHETGELETVETDAVILATGYRRAVPSFL 346 (436)
T ss_pred EEEEEeeccCCCceEEEeeEEEEecccccCCchhh
Confidence 88888876 88899999999999999998888773
No 85
>PF05585 DUF1758: Putative peptidase (DUF1758); InterPro: IPR008737 This is a family of nematode proteins of unknown function []. However, it seems likely that these proteins act as aspartic peptidases.
Probab=33.61 E-value=19 Score=24.04 Aligned_cols=12 Identities=33% Similarity=0.484 Sum_probs=9.5
Q ss_pred cEEeEEEecCCC
Q psy4053 52 YEFNVLVGADGK 63 (74)
Q Consensus 52 ~eFdvlIgAdG~ 63 (74)
-+.|+|||||-=
T Consensus 114 ~~iDiLIG~D~~ 125 (164)
T PF05585_consen 114 SPIDILIGADYF 125 (164)
T ss_pred CCCeEEEccchH
Confidence 458999999853
No 86
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=30.56 E-value=1.2e+02 Score=23.50 Aligned_cols=51 Identities=14% Similarity=0.202 Sum_probs=33.8
Q ss_pred EeEEEeeCceeceeeCCCCCCCcCceeeEEEEcCC-CCCCCccEEeEEEecCCCccccC
Q psy4053 11 HGVEIHEGVGFESLLPPPSNQDEEKIGWRAVVSPP-DHPVSQYEFNVLVGADGKRNTLE 68 (74)
Q Consensus 11 LGVeIH~~V~F~~L~eP~~~~~~~~~GWra~~~P~-~h~ls~~eFdvlIgAdG~rn~l~ 68 (74)
.||+||.+..-+++.+ .+ .+.+..+... +..-...++|.||-|.|.+-..+
T Consensus 228 ~gV~i~~~~~V~~i~~-~~------~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~ 279 (466)
T PRK06115 228 QGMKFKLGSKVTGATA-GA------DGVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQ 279 (466)
T ss_pred cCCEEEECcEEEEEEE-cC------CeEEEEEEEcCCCceeEEEeCEEEEccCCccccc
Confidence 4899999998888853 21 1566655432 22234578999999999874433
No 87
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=28.24 E-value=1.3e+02 Score=24.55 Aligned_cols=47 Identities=13% Similarity=0.112 Sum_probs=28.8
Q ss_pred EeEEEeeCceeceeeCCCCCCCcCceeeEEEEc-CCCCCCCccEEeEEEecCCC
Q psy4053 11 HGVEIHEGVGFESLLPPPSNQDEEKIGWRAVVS-PPDHPVSQYEFNVLVGADGK 63 (74)
Q Consensus 11 LGVeIH~~V~F~~L~eP~~~~~~~~~GWra~~~-P~~h~ls~~eFdvlIgAdG~ 63 (74)
-|++|+.+.+-.++.. ..+ .+|++.+. -.+..-..+++|.||-|.|-
T Consensus 198 ~Gv~i~~~~~V~~I~~-~~d-----~~w~v~v~~t~~g~~~~i~Ad~VV~AAGa 245 (497)
T PRK13339 198 PNAQVKYNHEVVDLER-LSD-----GGWEVTVKDRNTGEKREQVADYVFIGAGG 245 (497)
T ss_pred CCcEEEeCCEEEEEEE-CCC-----CCEEEEEEecCCCceEEEEcCEEEECCCc
Confidence 3899999999998853 211 26998753 22221114688887644443
No 88
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=27.15 E-value=47 Score=26.42 Aligned_cols=53 Identities=21% Similarity=0.213 Sum_probs=31.3
Q ss_pred eeeeEEeEEEeeCceeceeeCCCCCCCcCceeeEEEEcC-CCCCCCccEEeEE-EecCCCc
Q psy4053 6 VVNQVHGVEIHEGVGFESLLPPPSNQDEEKIGWRAVVSP-PDHPVSQYEFNVL-VGADGKR 64 (74)
Q Consensus 6 KVALLLGVeIH~~V~F~~L~eP~~~~~~~~~GWra~~~P-~~h~ls~~eFdvl-IgAdG~r 64 (74)
+-|.-.|++|+.+.+..++.+- .+ .+|++.+.- .+..-..++.|.| ++|++-.
T Consensus 186 ~~a~~~Gv~i~~~t~V~~i~~~-~~-----~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s 240 (483)
T TIGR01320 186 GYLVQNGTTIRFGHEVRNLKRQ-SD-----GSWTVTVKNTRTGGKRTLNTRFVFVGAGGGA 240 (483)
T ss_pred HHHHhCCCEEEeCCEEEEEEEc-CC-----CeEEEEEeeccCCceEEEECCEEEECCCcch
Confidence 3344469999999999998641 11 258886531 1221123567776 5555433
No 89
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=27.14 E-value=19 Score=26.27 Aligned_cols=59 Identities=20% Similarity=0.135 Sum_probs=35.5
Q ss_pred eeeeeEEeEEEeeCceeceeeCCCCCCCcCceeeEEEEcCC----CC-CCCccEEeEEEecCCCcc
Q psy4053 5 YVVNQVHGVEIHEGVGFESLLPPPSNQDEEKIGWRAVVSPP----DH-PVSQYEFNVLVGADGKRN 65 (74)
Q Consensus 5 LKVALLLGVeIH~~V~F~~L~eP~~~~~~~~~GWra~~~P~----~h-~ls~~eFdvlIgAdG~rn 65 (74)
++-|.=.||+|+.++++++++.-... ....|-.+...+- .| .-...+-+++|.|+|...
T Consensus 107 ~~~a~e~GV~I~~~t~V~dli~~~~~--~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a 170 (254)
T TIGR00292 107 ASKALQAGAKIFNGTSVEDLITRDDT--VGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDA 170 (254)
T ss_pred HHHHHHcCCEEECCcEEEEEEEeCCC--CceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCc
Confidence 33455579999999999999852211 1244544322221 11 122467899999999654
No 90
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=27.06 E-value=69 Score=26.05 Aligned_cols=50 Identities=18% Similarity=0.171 Sum_probs=30.1
Q ss_pred EeeCceeceeeCCCCCCCcCceeeEEEEcCCCCCCCccEEeEEEecCCCcccc
Q psy4053 15 IHEGVGFESLLPPPSNQDEEKIGWRAVVSPPDHPVSQYEFNVLVGADGKRNTL 67 (74)
Q Consensus 15 IH~~V~F~~L~eP~~~~~~~~~GWra~~~P~~h~ls~~eFdvlIgAdG~rn~l 67 (74)
|..|++=.++.. .+|.+. ...|+...+ .+......+||.||-|.|..+.+
T Consensus 103 I~fnt~V~~v~~-~~d~~~-~~~W~V~~~-~~g~~~~~~fD~VvvatG~~~~P 152 (531)
T PF00743_consen 103 IRFNTEVVSVER-DPDFSA-TGKWEVTTE-NDGKEETEEFDAVVVATGHFSKP 152 (531)
T ss_dssp EETSEEEEEEEE-ETTTT--ETEEEEEET-TTTEEEEEEECEEEEEE-SSSCE
T ss_pred EEEccEEeEeee-ccccCC-CceEEEEee-cCCeEEEEEeCeEEEcCCCcCCC
Confidence 555666666542 233221 236999876 34444556799999999987654
No 91
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=27.04 E-value=1.9e+02 Score=22.94 Aligned_cols=47 Identities=9% Similarity=-0.024 Sum_probs=31.8
Q ss_pred EeEEEeeCceeceeeCCCCCCCcCceeeEEEEcCCCCCCCccEEeEEEecCCCccccC
Q psy4053 11 HGVEIHEGVGFESLLPPPSNQDEEKIGWRAVVSPPDHPVSQYEFNVLVGADGKRNTLE 68 (74)
Q Consensus 11 LGVeIH~~V~F~~L~eP~~~~~~~~~GWra~~~P~~h~ls~~eFdvlIgAdG~rn~l~ 68 (74)
.||+++.+..-.++.. .. .+|.+.+. +. ..+++|.+|-|.|.+...+
T Consensus 280 ~gv~i~~~~~V~~I~~-~~------~~~~v~~~--~g--~~i~~d~lIlAtGa~~~~~ 326 (515)
T TIGR03140 280 YPIDLMENQRAKKIET-ED------GLIVVTLE--SG--EVLKAKSVIVATGARWRKL 326 (515)
T ss_pred hCCeEEcCCEEEEEEe-cC------CeEEEEEC--CC--CEEEeCEEEECCCCCcCCC
Confidence 4788888877777652 11 25777663 22 3589999999999875433
No 92
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=25.65 E-value=31 Score=23.48 Aligned_cols=11 Identities=27% Similarity=0.646 Sum_probs=8.9
Q ss_pred ccEEeEEEecC
Q psy4053 51 QYEFNVLVGAD 61 (74)
Q Consensus 51 ~~eFdvlIgAd 61 (74)
...||+|||||
T Consensus 117 ~~~~D~IlasD 127 (173)
T PF10294_consen 117 PHSFDVILASD 127 (173)
T ss_dssp -SSBSEEEEES
T ss_pred cccCCEEEEec
Confidence 34799999998
No 93
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=25.54 E-value=98 Score=21.47 Aligned_cols=45 Identities=24% Similarity=0.153 Sum_probs=29.6
Q ss_pred eEEeEEEeeCceeceeeCCCCCCCcCceeeE-EEEcCCCCCCCccEEeEEEecCCCcc
Q psy4053 9 QVHGVEIHEGVGFESLLPPPSNQDEEKIGWR-AVVSPPDHPVSQYEFNVLVGADGKRN 65 (74)
Q Consensus 9 LLLGVeIH~~V~F~~L~eP~~~~~~~~~GWr-a~~~P~~h~ls~~eFdvlIgAdG~rn 65 (74)
.=.||+|+.+++-+++..= ..+|+ +++.- . ++..|.+|-|.|-.+
T Consensus 158 ~~~Gv~i~~~~~V~~i~~~-------~~~v~gv~~~~-g----~i~ad~vV~a~G~~s 203 (358)
T PF01266_consen 158 QRAGVEIRTGTEVTSIDVD-------GGRVTGVRTSD-G----EIRADRVVLAAGAWS 203 (358)
T ss_dssp HHTT-EEEESEEEEEEEEE-------TTEEEEEEETT-E----EEEECEEEE--GGGH
T ss_pred HHhhhhccccccccchhhc-------ccccccccccc-c----ccccceeEecccccc
Confidence 3359999999999999852 22587 55543 2 478899999988643
No 94
>PRK08671 methionine aminopeptidase; Provisional
Probab=25.37 E-value=43 Score=24.76 Aligned_cols=28 Identities=32% Similarity=0.379 Sum_probs=22.2
Q ss_pred eeEEEEcCCCCCCCccEEeEEEecCCCc
Q psy4053 37 GWRAVVSPPDHPVSQYEFNVLVGADGKR 64 (74)
Q Consensus 37 GWra~~~P~~h~ls~~eFdvlIgAdG~r 64 (74)
.+-.-.+-+...++|+|+.++|..||..
T Consensus 260 ~yp~l~e~~~~~vaq~~~Tv~v~~~g~~ 287 (291)
T PRK08671 260 GYPVLKEVKGGLVSQAEHTVIVTEDGCE 287 (291)
T ss_pred cCCccEecCCCEEEEEEEEEEECCCCcE
Confidence 4555556567789999999999999974
No 95
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=25.17 E-value=60 Score=22.83 Aligned_cols=49 Identities=22% Similarity=0.165 Sum_probs=31.2
Q ss_pred eeeeeEEeEEEeeCceeceeeCCCCCCCcCceeeEEEEcCCCCCCCccEEeEEEecCCCc
Q psy4053 5 YVVNQVHGVEIHEGVGFESLLPPPSNQDEEKIGWRAVVSPPDHPVSQYEFNVLVGADGKR 64 (74)
Q Consensus 5 LKVALLLGVeIH~~V~F~~L~eP~~~~~~~~~GWra~~~P~~h~ls~~eFdvlIgAdG~r 64 (74)
++-|.-.|++|+.+.+..++.. .. .+|.....+ +. ....|.||-|.|-.
T Consensus 144 ~~~~~~~g~~~~~~~~v~~i~~-~~------~~~~~v~~~-~g---~~~a~~vV~a~G~~ 192 (337)
T TIGR02352 144 EKALEKLGVEIIEHTEVQHIEI-RG------EKVTAIVTP-SG---DVQADQVVLAAGAW 192 (337)
T ss_pred HHHHHHcCCEEEccceEEEEEe-eC------CEEEEEEcC-CC---EEECCEEEEcCChh
Confidence 4445567999999999999873 21 134322222 22 45678888888843
No 96
>PF13567 DUF4131: Domain of unknown function (DUF4131)
Probab=24.65 E-value=80 Score=19.49 Aligned_cols=20 Identities=30% Similarity=0.547 Sum_probs=16.4
Q ss_pred eeeEEEEcCCCCCCCccEEe
Q psy4053 36 IGWRAVVSPPDHPVSQYEFN 55 (74)
Q Consensus 36 ~GWra~~~P~~h~ls~~eFd 55 (74)
.=.+++++|..++.+..+||
T Consensus 135 i~~~g~l~~~~~~~Npg~FD 154 (176)
T PF13567_consen 135 IRVRGKLKPPSGPTNPGGFD 154 (176)
T ss_pred EEEEEEEecCCCCCCCCCcC
Confidence 33566889999999999998
No 97
>COG0024 Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
Probab=24.46 E-value=1.7e+02 Score=22.19 Aligned_cols=54 Identities=22% Similarity=0.314 Sum_probs=36.2
Q ss_pred eeeeeeEEeEEEeeCceeceeeCCCCCCCcCceeeEEEEcCCCCCCCccEEeEEEecCCCc
Q psy4053 4 EYVVNQVHGVEIHEGVGFESLLPPPSNQDEEKIGWRAVVSPPDHPVSQYEFNVLVGADGKR 64 (74)
Q Consensus 4 LLKVALLLGVeIH~~V~F~~L~eP~~~~~~~~~GWra~~~P~~h~ls~~eFdvlIgAdG~r 64 (74)
.||--.++-+|-..+..-.....=+ ..+|.+...+ ....++||..++|-.||..
T Consensus 194 ~l~~Gmv~aIEPmi~~G~~~~~~~~------~d~Wt~~t~d-~~~~aq~EHTv~Vt~~g~e 247 (255)
T COG0024 194 RLKEGMVFAIEPMINTGSGEVVEGP------SDRWTLVTKD-GSLSAQFEHTVIVTEDGCE 247 (255)
T ss_pred ccCCCCEEEEeeEEEcCCCceEecC------CCCeEEEeCC-CCEEeEEEEEEEEeCCCcE
Confidence 3455556667766665544443322 1479977764 5589999999999999864
No 98
>PRK09897 hypothetical protein; Provisional
Probab=24.15 E-value=1.7e+02 Score=24.01 Aligned_cols=41 Identities=20% Similarity=0.221 Sum_probs=29.7
Q ss_pred EEEeeCceeceeeCCCCCCCcCceeeEEEEcCCCCCCCccEEeEEEecCCC
Q psy4053 13 VEIHEGVGFESLLPPPSNQDEEKIGWRAVVSPPDHPVSQYEFNVLVGADGK 63 (74)
Q Consensus 13 VeIH~~V~F~~L~eP~~~~~~~~~GWra~~~P~~h~ls~~eFdvlIgAdG~ 63 (74)
|+||.+.+.+++.+ .. .||.+.+.-. -..+++|.||-|.|.
T Consensus 124 V~v~~~~~V~~I~~-~~------~g~~V~t~~g---g~~i~aD~VVLAtGh 164 (534)
T PRK09897 124 VAVYESCQVTDLQI-TN------AGVMLATNQD---LPSETFDLAVIATGH 164 (534)
T ss_pred EEEEECCEEEEEEE-eC------CEEEEEECCC---CeEEEcCEEEECCCC
Confidence 78999999999853 21 2788776421 134689999999996
No 99
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=23.30 E-value=49 Score=26.21 Aligned_cols=52 Identities=17% Similarity=0.087 Sum_probs=35.8
Q ss_pred eeeeEEeEEEeeCceeceeeCCCCCCCcCceeeEEEEcCC-CCCCCccEEeEEEecCCCc
Q psy4053 6 VVNQVHGVEIHEGVGFESLLPPPSNQDEEKIGWRAVVSPP-DHPVSQYEFNVLVGADGKR 64 (74)
Q Consensus 6 KVALLLGVeIH~~V~F~~L~eP~~~~~~~~~GWra~~~P~-~h~ls~~eFdvlIgAdG~r 64 (74)
+-|.-.|++|+.+++-.++.. . ..+|.+.+.-. +..-..+.-++||.|+|-.
T Consensus 163 ~~A~~~Ga~i~~~~~V~~i~~-~------~~~~~v~~~~~~~g~~~~i~a~~VVnAaG~w 215 (508)
T PRK12266 163 RDAAERGAEILTRTRVVSARR-E------NGLWHVTLEDTATGKRYTVRARALVNAAGPW 215 (508)
T ss_pred HHHHHcCCEEEcCcEEEEEEE-e------CCEEEEEEEEcCCCCEEEEEcCEEEECCCcc
Confidence 445667999999999999863 1 12588776531 2223356789999999963
No 100
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=22.73 E-value=45 Score=23.17 Aligned_cols=14 Identities=29% Similarity=0.750 Sum_probs=12.2
Q ss_pred ccEEeEEEecCCCc
Q psy4053 51 QYEFNVLVGADGKR 64 (74)
Q Consensus 51 ~~eFdvlIgAdG~r 64 (74)
+|+.|++|.-||+-
T Consensus 18 ~f~~DIvi~~dG~v 31 (121)
T COG1504 18 DFEHDIVIRPDGKV 31 (121)
T ss_pred eccccEEEecCCce
Confidence 68899999999973
No 101
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=22.51 E-value=1.9e+02 Score=24.32 Aligned_cols=46 Identities=24% Similarity=0.375 Sum_probs=29.0
Q ss_pred eEEEeeCceeceeeCCCCCCCcCceeeEEEEcCCCCCCCccEEe---EEEecCCCc
Q psy4053 12 GVEIHEGVGFESLLPPPSNQDEEKIGWRAVVSPPDHPVSQYEFN---VLVGADGKR 64 (74)
Q Consensus 12 GVeIH~~V~F~~L~eP~~~~~~~~~GWra~~~P~~h~ls~~eFd---vlIgAdG~r 64 (74)
|+++|.|.+=++|.. ..|. .|++.+.=. +-=...+++ |+|||+|.-
T Consensus 196 ~~~~~~~~eV~~i~r-~~dg-----~W~v~~~~~-~~~~~~~v~a~FVfvGAGG~a 244 (488)
T PF06039_consen 196 GFELHLNHEVTDIKR-NGDG-----RWEVKVKDL-KTGEKREVRAKFVFVGAGGGA 244 (488)
T ss_pred CcEEEecCEeCeeEE-CCCC-----CEEEEEEec-CCCCeEEEECCEEEECCchHh
Confidence 789999999999874 3321 399987521 111112222 789999863
No 102
>cd01088 MetAP2 Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=22.19 E-value=53 Score=24.31 Aligned_cols=28 Identities=25% Similarity=0.417 Sum_probs=22.2
Q ss_pred eeEEEEcCCCCCCCccEEeEEEecCCCc
Q psy4053 37 GWRAVVSPPDHPVSQYEFNVLVGADGKR 64 (74)
Q Consensus 37 GWra~~~P~~h~ls~~eFdvlIgAdG~r 64 (74)
.+-.-.+-+...++|+|+.++|..||..
T Consensus 260 ~y~~l~e~~g~~vaq~~~T~~v~~~g~~ 287 (291)
T cd01088 260 PYPVLKEISGGYVAQFEHTIIVREDGKE 287 (291)
T ss_pred cCCccEeeCCCeEEEEEEEEEECCCCcE
Confidence 3455555567799999999999999974
No 103
>KOG2614|consensus
Probab=20.50 E-value=46 Score=27.28 Aligned_cols=17 Identities=24% Similarity=0.491 Sum_probs=14.5
Q ss_pred ccEEeEEEecCCCcccc
Q psy4053 51 QYEFNVLVGADGKRNTL 67 (74)
Q Consensus 51 ~~eFdvlIgAdG~rn~l 67 (74)
.++-|++||+||-++..
T Consensus 149 ~~~~dlligCDGa~S~V 165 (420)
T KOG2614|consen 149 TVKGDLLIGCDGAYSKV 165 (420)
T ss_pred EEEeeEEEEcCchHHHH
Confidence 77899999999987654
No 104
>PF09923 DUF2155: Uncharacterized protein conserved in bacteria (DUF2155); InterPro: IPR019225 This entry contains various hypothetical prokaryotic proteins that have no known function.
Probab=20.42 E-value=1.9e+02 Score=18.57 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=20.8
Q ss_pred CceeeEEEEcCCCCCCCccEEeEEE
Q psy4053 34 EKIGWRAVVSPPDHPVSQYEFNVLV 58 (74)
Q Consensus 34 ~~~GWra~~~P~~h~ls~~eFdvlI 58 (74)
.-.||...-+|+-|++.+-.+||=+
T Consensus 63 iF~GWMfassPal~~~eHP~YDVwv 87 (90)
T PF09923_consen 63 IFSGWMFASSPALNALEHPRYDVWV 87 (90)
T ss_pred cEeeeEEecCcccccccCccceEEE
Confidence 4689999999998888887888744
Done!