RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4053
(74 letters)
>2bry_A NEDD9 interacting protein with calponin homology and LIM domains;
transport, coiled coil, cytoskeleton, FAD, flavoprotein,
metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB:
2c4c_A* 2bra_A*
Length = 497
Score = 74.4 bits (182), Expect = 9e-18
Identities = 27/61 (44%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 12 GVEIHEGVGFESLLPPPSNQDEEKIGWRAVVSPPDH-PVSQYEFNVLVGADGKRNTLEGF 70
GVEIH GV F L PPP GWRA + P ++ YEF+VL+ A G + EGF
Sbjct: 180 GVEIHWGVKFTGLQPPPRKGS----GWRAQLQPNPPAQLASYEFDVLISAAGGKFVPEGF 235
Query: 71 K 71
Sbjct: 236 T 236
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein
structure initiative, northeast structural genomics
consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}
Length = 421
Score = 30.1 bits (68), Expect = 0.039
Identities = 7/57 (12%), Positives = 16/57 (28%), Gaps = 7/57 (12%)
Query: 11 HGVEIHEGVGFESLLPPPSNQDEEKIGWRAVVSPPDHPVSQYEFNVLVGADGKRNTL 67
GV++ VG + + + + E ++ A G +
Sbjct: 119 QGVDVEYEVGVTDI-------KFFGTDSVTTIEDINGNKREIEARFIIDASGYGRVI 168
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Length = 512
Score = 29.5 bits (66), Expect = 0.075
Identities = 9/57 (15%), Positives = 17/57 (29%), Gaps = 6/57 (10%)
Query: 11 HGVEIHEGVGFESLLPPPSNQDEEKIGWRAVVSPPDHPVSQYEFNVLVGADGKRNTL 67
GV++ E +L + E+ + +V A G R +
Sbjct: 124 KGVDVRERHEVIDVL-----FEGERA-VGVRYRNTEGVELMAHARFIVDASGNRTRV 174
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol
biosynthesis, halogenation reaction, structural
genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Length = 591
Score = 27.6 bits (61), Expect = 0.34
Identities = 7/57 (12%), Positives = 15/57 (26%), Gaps = 7/57 (12%)
Query: 11 HGVEIHEGVGFESLLPPPSNQDEEKIGWRAVVSPPDHPVSQYEFNVLVGADGKRNTL 67
G+ +HE + D + E + ++ A G +
Sbjct: 141 RGITVHEETPVTDV-------DLSDPDRVVLTVRRGGESVTVESDFVIDAGGSGGPI 190
>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein,
oxidoreductase; HET: FAD; 2.89A {Streptomyces
argillaceus}
Length = 570
Score = 26.6 bits (59), Expect = 0.80
Identities = 17/60 (28%), Positives = 20/60 (33%), Gaps = 20/60 (33%)
Query: 11 HGVEI---HEGVGFESLLPPPSNQDEEKIGWRAVVSPPDHPV---SQYEFNVLVGADGKR 64
G EI HE QD E V+ P P ++Y VG DG R
Sbjct: 161 AGAEIPRGHEVTRLR--------QDAE--AVEVTVAGPSGPYPVRARY----GVGCDGGR 206
>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic
hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}
Length = 500
Score = 26.1 bits (58), Expect = 1.2
Identities = 15/60 (25%), Positives = 19/60 (31%), Gaps = 20/60 (33%)
Query: 11 HGVEI---HEGVGFESLLPPPSNQDEEKIGWRAVVSPPDHPV---SQYEFNVLVGADGKR 64
G +I HE + D G V P+ + Y LVG DG R
Sbjct: 119 LGADIRRGHEVLSLT--------DDGA--GVTVEVRGPEGKHTLRAAY----LVGCDGGR 164
>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic
hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}
Length = 499
Score = 25.7 bits (57), Expect = 1.2
Identities = 13/60 (21%), Positives = 19/60 (31%), Gaps = 20/60 (33%)
Query: 11 HGVEI---HEGVGFESLLPPPSNQDEEKIGWRAVVSPPDHPV---SQYEFNVLVGADGKR 64
G E+ H + + V PD P ++Y +VG DG R
Sbjct: 120 RGAELLRGHTVRALT--------DEGD--HVVVEVEGPDGPRSLTTRY----VVGCDGGR 165
>2q8k_A Proliferation-associated protein 2G4; EBP1, PA2G4, methionine
aminopeptidase, PITA-bread, transcri; 1.60A {Homo
sapiens} PDB: 2v6c_A
Length = 401
Score = 24.3 bits (53), Expect = 5.0
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 45 PDHPVSQYEFNVLVGADGK 63
V+Q++F VL+ +G
Sbjct: 319 EGEFVAQFKFTVLLMPNGP 337
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 24.2 bits (52), Expect = 5.2
Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 19/42 (45%)
Query: 21 FESLLPPPSN---QDEEKIGWRAVVSPPDHPVSQYEFNVLVG 59
F +LP P+ D+E P + E LVG
Sbjct: 37 FNKILPEPTEGFAADDE-------------PTTPAE---LVG 62
>2lie_A CCL2 lectin; sugar binding protein; NMR {Coprinopsis cinerea} PDB:
2liq_A*
Length = 153
Score = 24.1 bits (51), Expect = 5.7
Identities = 9/43 (20%), Positives = 16/43 (37%)
Query: 22 ESLLPPPSNQDEEKIGWRAVVSPPDHPVSQYEFNVLVGADGKR 64
+ P +IGW A P P + Y + + + + G
Sbjct: 73 NTWTISPVGSPNSQIGWGAGNVPVVLPPNNYVWTLTLTSGGYN 115
>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266,
NESG, PAR240, structural genomics, PSI-2; HET: FAD;
1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2
d.16.1.2 PDB: 2rgj_A*
Length = 410
Score = 23.8 bits (52), Expect = 6.2
Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 7/60 (11%)
Query: 3 IEYVVNQVHGVEIHEGVGFESLLPPPSNQDEEKIGWRAVVSPPDHPVSQYEFNVLVGADG 62
+ V ++ + G+G E + +E +VLVGADG
Sbjct: 114 LAAVRERLGQQAVRTGLGVERI-------EERDGRVLIGARDGHGKPQALGADVLVGADG 166
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic
hydroxylase, nicotine degradation, mono-oxygenase; HET:
FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2
d.16.1.2
Length = 397
Score = 23.8 bits (52), Expect = 6.4
Identities = 12/53 (22%), Positives = 18/53 (33%), Gaps = 11/53 (20%)
Query: 10 VHGVEIHEGVGFESLLPPPSNQDEEKIGWRAVVSPPDHPVSQYEFNVLVGADG 62
H L +QD E + D ++ E N ++GADG
Sbjct: 109 FGPERYHTSKCLVGL-----SQDSE----TVQMRFSDG--TKAEANWVIGADG 150
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin,
bacteroides F oxidoreductase; HET: FAD; 2.09A
{Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A*
2y6r_A* 3p9u_A*
Length = 398
Score = 23.9 bits (52), Expect = 6.7
Identities = 2/13 (15%), Positives = 7/13 (53%)
Query: 50 SQYEFNVLVGADG 62
++++ A+G
Sbjct: 167 PSETADLVILANG 179
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase;
HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A*
3rp6_A*
Length = 407
Score = 23.8 bits (52), Expect = 7.3
Identities = 5/13 (38%), Positives = 8/13 (61%)
Query: 50 SQYEFNVLVGADG 62
S ++L+ ADG
Sbjct: 166 SSASGDLLIAADG 178
>1xgs_A Methionine aminopeptidase; hyperthermophIle; 1.75A {Pyrococcus
furiosus} SCOP: a.4.5.25 d.127.1.1 PDB: 1xgm_A 1xgn_A
1xgo_A 1wkm_A 2dfi_A
Length = 295
Score = 23.8 bits (52), Expect = 7.6
Identities = 5/16 (31%), Positives = 9/16 (56%)
Query: 48 PVSQYEFNVLVGADGK 63
V+Q+E ++V D
Sbjct: 275 IVAQFEHTIIVEKDSV 290
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain,
endocytosis/exocytosis complex; 3.20A {Rattus rattus}
SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Length = 296
Score = 23.3 bits (50), Expect = 9.3
Identities = 5/27 (18%), Positives = 11/27 (40%)
Query: 25 LPPPSNQDEEKIGWRAVVSPPDHPVSQ 51
+ P + + W +++ P PV
Sbjct: 243 VGPEAADPHGREHWAEMLANPRKPVEH 269
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.136 0.404
Gapped
Lambda K H
0.267 0.0750 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,191,429
Number of extensions: 58514
Number of successful extensions: 90
Number of sequences better than 10.0: 1
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 19
Length of query: 74
Length of database: 6,701,793
Length adjustment: 44
Effective length of query: 30
Effective length of database: 5,473,269
Effective search space: 164198070
Effective search space used: 164198070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (23.4 bits)