RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4053
         (74 letters)



>d1b6aa2 d.127.1.1 (A:110-374,A:449-478) Methionine aminopeptidase
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 295

 Score = 22.6 bits (47), Expect = 7.1
 Identities = 6/27 (22%), Positives = 10/27 (37%), Gaps = 1/27 (3%)

Query: 36  IGWRAVVSPPDHPVSQYEFNVLVGADG 62
            G   VV       +Q+E  +L+    
Sbjct: 260 TGK-GVVDIKGSYTAQFEHTILLRPTC 285


>d1fuxa_ b.17.1.2 (A:) Hypothetical protein YbcL {Escherichia coli
           [TaxId: 562]}
          Length = 165

 Score = 22.0 bits (46), Expect = 9.3
 Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 3/50 (6%)

Query: 10  VHGVEIHEGVGFESLLPPPSNQ---DEEKIGWRAVVSPPDHPVSQYEFNV 56
           V  + +  G    + LP  + Q   D    G+     P       Y+F V
Sbjct: 74  VTYLPVDAGRRDGTKLPTGAVQGRNDFGYAGFGGACPPKGDKPHHYQFKV 123


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.136    0.404 

Gapped
Lambda     K      H
   0.267   0.0634    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 290,521
Number of extensions: 11435
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 3
Length of query: 74
Length of database: 2,407,596
Length adjustment: 41
Effective length of query: 33
Effective length of database: 1,844,666
Effective search space: 60873978
Effective search space used: 60873978
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 47 (22.1 bits)