BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy4056
         (227 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2BS2|A Chain A, Quinol:fumarate Reductase From Wolinella Succinogenes
 pdb|2BS2|D Chain D, Quinol:fumarate Reductase From Wolinella Succinogenes
          Length = 660

 Score = 27.3 bits (59), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 11/73 (15%)

Query: 86  AEQLLELCKMNKGVYIKVGQHIGALEYLLPKEYVETMKVLHSKAPMSPMKDILAVLKEDL 145
           + +++E  +  KGV    GQH+     +L ++++ET            ++D+  + +   
Sbjct: 305 SRRMIEHIRKGKGVQSPYGQHLWLDISILGRKHIET-----------NLRDVQEICEYFA 353

Query: 146 GKDPSEIFASIEP 158
           G DP+E +A + P
Sbjct: 354 GIDPAEKWAPVLP 366


>pdb|1QLB|A Chain A, Respiratory Complex Ii-Like Fumarate Reductase From
           Wolinella Succinogenes
 pdb|1QLB|D Chain D, Respiratory Complex Ii-Like Fumarate Reductase From
           Wolinella Succinogenes
          Length = 656

 Score = 27.3 bits (59), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 11/73 (15%)

Query: 86  AEQLLELCKMNKGVYIKVGQHIGALEYLLPKEYVETMKVLHSKAPMSPMKDILAVLKEDL 145
           + +++E  +  KGV    GQH+     +L ++++ET            ++D+  + +   
Sbjct: 305 SRRMIEHIRKGKGVQSPYGQHLWLDISILGRKHIET-----------NLRDVQEICEYFA 353

Query: 146 GKDPSEIFASIEP 158
           G DP+E +A + P
Sbjct: 354 GIDPAEKWAPVLP 366


>pdb|1E7P|A Chain A, Quinol:fumarate Reductase From Wolinella Succinogenes
 pdb|1E7P|D Chain D, Quinol:fumarate Reductase From Wolinella Succinogenes
 pdb|2BS3|A Chain A, Glu C180-> Gln Variant Quinol:fumarate Reductase From
           Wolinella Succinogenes
 pdb|2BS3|D Chain D, Glu C180-> Gln Variant Quinol:fumarate Reductase From
           Wolinella Succinogenes
 pdb|2BS4|A Chain A, Glu C180-> Ile Variant Quinol:fumarate Reductase From
           Wolinella Succinogenes
 pdb|2BS4|D Chain D, Glu C180-> Ile Variant Quinol:fumarate Reductase From
           Wolinella Succinogenes
 pdb|1E7P|G Chain G, Quinol:fumarate Reductase From Wolinella Succinogenes
 pdb|1E7P|J Chain J, Quinol:fumarate Reductase From Wolinella Succinogenes
          Length = 656

 Score = 26.9 bits (58), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 11/73 (15%)

Query: 86  AEQLLELCKMNKGVYIKVGQHIGALEYLLPKEYVETMKVLHSKAPMSPMKDILAVLKEDL 145
           + +++E  +  KGV    GQH+     +L ++++ET            ++D+  + +   
Sbjct: 305 SRRMIEHIRKGKGVQSPYGQHLWLDISILGRKHIET-----------NLRDVQEICEYFA 353

Query: 146 GKDPSEIFASIEP 158
           G DP+E +A + P
Sbjct: 354 GIDPAEKWAPVLP 366


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.134    0.388 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,517,666
Number of Sequences: 62578
Number of extensions: 249668
Number of successful extensions: 647
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 647
Number of HSP's gapped (non-prelim): 8
length of query: 227
length of database: 14,973,337
effective HSP length: 95
effective length of query: 132
effective length of database: 9,028,427
effective search space: 1191752364
effective search space used: 1191752364
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)