RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4056
         (227 letters)



>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 285

 Score = 28.1 bits (62), Expect = 0.81
 Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 6/68 (8%)

Query: 143 EDLGKDPSEIFAS---IEPNPMGAASLAQVHKATLHDGSTIALKVQHRNVRDNANI--DI 197
           + L KD  EI      +E   +G     +V   T +  + +A+K              + 
Sbjct: 5   QGLAKDAWEIPRESLRLE-VKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEA 63

Query: 198 KCMEALVH 205
           + M+ L H
Sbjct: 64  QVMKKLRH 71


>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 258

 Score = 27.7 bits (61), Expect = 1.1
 Identities = 11/67 (16%), Positives = 22/67 (32%), Gaps = 6/67 (8%)

Query: 162 GAASLAQVHKATLHDGSTIALKVQHRNVRDNANI--DIKCMEALVH--VVAW--VFPEFK 215
           G      V          +A+K+             + K M  L H  +V    V  + +
Sbjct: 13  GTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQR 72

Query: 216 FLWLVDE 222
            ++++ E
Sbjct: 73  PIFIITE 79


>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 277

 Score = 27.4 bits (60), Expect = 1.3
 Identities = 16/79 (20%), Positives = 27/79 (34%), Gaps = 11/79 (13%)

Query: 155 SIEPNPMGAASLAQVHKATLHDGST---IALKVQHRNVRDNANID-----IKCMEALVH- 205
           ++E   +G+ +   V K           +A+K+      D A  D        M+ L + 
Sbjct: 9   TLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNP 68

Query: 206 --VVAWVFPEFKFLWLVDE 222
             V      E +   LV E
Sbjct: 69  YIVRMIGICEAESWMLVME 87


>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal
           domain {Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 191

 Score = 27.1 bits (59), Expect = 1.4
 Identities = 6/47 (12%), Positives = 10/47 (21%)

Query: 159 NPMGAASLAQVHKATLHDGSTIALKVQHRNVRDNANIDIKCMEALVH 205
             MG    + V            +K           +  K     +H
Sbjct: 6   KLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLH 52


>d2ccqa1 d.314.1.1 (A:11-109) N-glycanase 1, N-terminal domain
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 99

 Score = 25.9 bits (57), Expect = 1.9
 Identities = 9/50 (18%), Positives = 19/50 (38%), Gaps = 2/50 (4%)

Query: 96  NKGVYIKVGQHIGALEYLLPKEYVETMK--VLHSKAPMSPMKDILAVLKE 143
           N     ++    GA+E L    + E     +   KA +  ++ I  ++  
Sbjct: 48  NTAFSTRLLPVRGAVECLFEMGFEEGETHLIFPKKASVEQLQKIRDLIAI 97


>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 263

 Score = 27.0 bits (59), Expect = 2.0
 Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 6/67 (8%)

Query: 162 GAASLAQVHKATLHDGSTIALKVQHRNVRDNANI--DIKCMEALVH--VVAW--VFPEFK 215
           G+     VH     +   +A+K          +   + + M  L H  +V    V  E  
Sbjct: 14  GSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQA 73

Query: 216 FLWLVDE 222
            + LV E
Sbjct: 74  PICLVFE 80


>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 272

 Score = 26.9 bits (59), Expect = 2.0
 Identities = 8/46 (17%), Positives = 16/46 (34%), Gaps = 2/46 (4%)

Query: 162 GAASLAQVHKATLHDGSTIALKVQHRNVRDNANI--DIKCMEALVH 205
           GA    +V     +  + +A+K   +          +   M+ L H
Sbjct: 22  GAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQH 67


>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium
           falciparum) [TaxId: 5833]}
          Length = 286

 Score = 25.6 bits (55), Expect = 5.4
 Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 9/73 (12%)

Query: 159 NPMGAASLAQVHKATLHDGSTIALKV-----QHRNVRDNANIDIKCMEALVH--VVA--W 209
             +G  +   V+KA  + G T ALK      +   +      +I  ++ L H  +V    
Sbjct: 8   EKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYD 67

Query: 210 VFPEFKFLWLVDE 222
           V    K L LV E
Sbjct: 68  VIHTKKRLVLVFE 80


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.134    0.388 

Gapped
Lambda     K      H
   0.267   0.0499    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 814,428
Number of extensions: 35145
Number of successful extensions: 89
Number of sequences better than 10.0: 1
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 11
Length of query: 227
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 145
Effective length of database: 1,281,736
Effective search space: 185851720
Effective search space used: 185851720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.0 bits)