BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4057
(246 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|383847977|ref|XP_003699629.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like [Megachile
rotundata]
Length = 231
Score = 325 bits (834), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 173/240 (72%), Positives = 193/240 (80%), Gaps = 18/240 (7%)
Query: 11 TNFVYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNA 66
N +Y+ + I +LKKSLYAIFSQFGQI+DIVALKTLKMRGQAFVIFKEIASATNA
Sbjct: 6 NNTIYINNLNEKIKKDELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIASATNA 65
Query: 67 LRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKA 126
LRSMQGFPFYDKPMRIQY+KTDSD+I+K+KGT+ ERPKK K+ P D EAK++KK+
Sbjct: 66 LRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTYAERPKKP-KRVVPAAD-EEAKRAKKR- 122
Query: 127 AKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEM 186
AKEQA+ +QQ A Q P + A VPEQPPNQILFLTNLP+ETSEM
Sbjct: 123 AKEQAK--HSQQISYHAGVPQHP---------GLVNAAVPEQPPNQILFLTNLPDETSEM 171
Query: 187 MLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
MLSMLFNQFPGFKEVRLVPNRHDIAFVEFENE+QS AAK AL GFKITP+HAMKISFAKK
Sbjct: 172 MLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEVQSGAAKDALQGFKITPSHAMKISFAKK 231
>gi|270047496|ref|NP_001161808.1| U1 small nuclear ribonucleoprotein A [Apis mellifera]
Length = 231
Score = 325 bits (833), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 173/240 (72%), Positives = 192/240 (80%), Gaps = 18/240 (7%)
Query: 11 TNFVYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNA 66
N +Y+ + I +LKKSLYAIFSQFGQI+DIVALKTLKMRGQAFVIFKEIASATNA
Sbjct: 6 NNTIYINNLNVKIKKDELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIASATNA 65
Query: 67 LRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKA 126
LRSMQGFPFYDKPMRIQY+KTDSD+I+K+KGT+ ERPKK K+ P D EAK++KK+
Sbjct: 66 LRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTYAERPKKP-KRVVPAAD-EEAKRAKKR- 122
Query: 127 AKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEM 186
AKEQA+ QQ VQQ P + VPEQPPNQILFLTNLP+ETSEM
Sbjct: 123 AKEQAK---HSQQIGYHTGVQQHP--------GLVNTAVPEQPPNQILFLTNLPDETSEM 171
Query: 187 MLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
MLSMLFNQFPGFKEVRLVPNRHDIAFVEFENE+QS AAK AL GFKITP+HAMKISFAKK
Sbjct: 172 MLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEVQSGAAKDALQGFKITPSHAMKISFAKK 231
>gi|380024353|ref|XP_003695965.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like [Apis
florea]
Length = 231
Score = 325 bits (832), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 173/240 (72%), Positives = 192/240 (80%), Gaps = 18/240 (7%)
Query: 11 TNFVYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNA 66
N +Y+ + I +LKKSLYAIFSQFGQI+DIVALKTLKMRGQAFVIFKEIASATNA
Sbjct: 6 NNTIYINNLNEKIKKDELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIASATNA 65
Query: 67 LRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKA 126
LRSMQGFPFYDKPMRIQY+KTDSD+I+K+KGT+ ERPKK K+ P D EAK++KK+
Sbjct: 66 LRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTYAERPKKP-KRVVPAAD-EEAKRAKKR- 122
Query: 127 AKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEM 186
AKEQA+ QQ VQQ P + VPEQPPNQILFLTNLP+ETSEM
Sbjct: 123 AKEQAK---HSQQIGYHTGVQQHP--------GLVNTAVPEQPPNQILFLTNLPDETSEM 171
Query: 187 MLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
MLSMLFNQFPGFKEVRLVPNRHDIAFVEFENE+QS AAK AL GFKITP+HAMKISFAKK
Sbjct: 172 MLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEVQSGAAKDALQGFKITPSHAMKISFAKK 231
>gi|340726396|ref|XP_003401545.1| PREDICTED: u2 small nuclear ribonucleoprotein B''-like [Bombus
terrestris]
gi|350423999|ref|XP_003493658.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like [Bombus
impatiens]
Length = 233
Score = 323 bits (829), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 172/240 (71%), Positives = 192/240 (80%), Gaps = 18/240 (7%)
Query: 11 TNFVYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNA 66
N +Y+ + I +LKKSLYAIFSQFGQI+DIVALKTLKMRGQAFVIFKEIASATNA
Sbjct: 8 NNTIYINNLNEKIKKDELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIASATNA 67
Query: 67 LRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKA 126
LRSMQGFPFYDKPMRIQY+KTDSD+I+K+KGT+ ERPKK K+ P D EAK++KK+
Sbjct: 68 LRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTYAERPKKP-KRVVPAAD-EEAKRAKKR- 124
Query: 127 AKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEM 186
AKEQA+ +QQ A Q P + VPEQPPNQILFLTNLP+ETSEM
Sbjct: 125 AKEQAK--HSQQIGYHAGVPQHP---------GLVNTAVPEQPPNQILFLTNLPDETSEM 173
Query: 187 MLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
MLSMLFNQFPGFKEVRLVPNRHDIAFVEFENE+QS AAK AL GFKITP+HAMKISFAKK
Sbjct: 174 MLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEVQSGAAKDALQGFKITPSHAMKISFAKK 233
>gi|307195443|gb|EFN77329.1| U2 small nuclear ribonucleoprotein B'' [Harpegnathos saltator]
Length = 231
Score = 322 bits (826), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 172/240 (71%), Positives = 191/240 (79%), Gaps = 18/240 (7%)
Query: 11 TNFVYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNA 66
N +Y+ + I +LKKSLYAIFSQFGQI+DIVALKTLKMRGQAFVIFKEI SATNA
Sbjct: 6 NNTIYINNLNEKIKKDELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIGSATNA 65
Query: 67 LRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKA 126
LRSMQGFPFYDKPMRIQY+KTDSD+I+K+KGTF ERPKK K+ P D EAK++KK+
Sbjct: 66 LRSMQGFPFYDKPMRIQYAKTDSDLIAKMKGTFAERPKKP-KRVVPAAD-EEAKRAKKR- 122
Query: 127 AKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEM 186
AKEQA+ +QQ A Q P + VPEQPPNQILFLTNLP+ETSEM
Sbjct: 123 AKEQAK--HSQQIGYHAGVPQHP---------GLVNTAVPEQPPNQILFLTNLPDETSEM 171
Query: 187 MLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
MLSMLFNQFPGFKEVRLVPNRHDIAFVEFENE+QS AAK AL GFKITP+HAMKISFAKK
Sbjct: 172 MLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEVQSGAAKDALQGFKITPSHAMKISFAKK 231
>gi|156548050|ref|XP_001606482.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like isoform 1
[Nasonia vitripennis]
gi|345485456|ref|XP_003425274.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like isoform 2
[Nasonia vitripennis]
Length = 230
Score = 313 bits (801), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 170/240 (70%), Positives = 188/240 (78%), Gaps = 19/240 (7%)
Query: 11 TNFVYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNA 66
N +Y+ + I +LKKSLYAIFSQFGQI+DIVALKTLKMRGQAFVIFKEIASATNA
Sbjct: 6 NNTIYINNLNEKIKKDELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIASATNA 65
Query: 67 LRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKA 126
LRSMQGFPFYDKPMRI YSKTDSD+I+K+KGTF ERPKK K+ P D ++
Sbjct: 66 LRSMQGFPFYDKPMRINYSKTDSDIIAKMKGTFTERPKK-PKRVIPAAD-------EEAK 117
Query: 127 AKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEM 186
++ QA+QQQM P +Q A MA A VPEQPPNQILFLTNLP+ETSEM
Sbjct: 118 KAKKRAKEQAKQQQMG----YTPGAAQ---HAGMANAAVPEQPPNQILFLTNLPDETSEM 170
Query: 187 MLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
MLSMLFNQFPGFKEVRLVPNRHDIAFVEFENE+QS AAK AL GFKITP+HAMKISFAKK
Sbjct: 171 MLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEVQSGAAKDALQGFKITPSHAMKISFAKK 230
>gi|58394659|ref|XP_320869.2| AGAP011637-PA [Anopheles gambiae str. PEST]
gi|55235062|gb|EAA00418.2| AGAP011637-PA [Anopheles gambiae str. PEST]
Length = 216
Score = 301 bits (770), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 154/237 (64%), Positives = 177/237 (74%), Gaps = 33/237 (13%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I+ +LKKSLYAIFSQFGQI+DIVA KTLKMRGQAF+IFKEI+SATNA+R+
Sbjct: 9 IYINNLNEKINKVELKKSLYAIFSQFGQILDIVAYKTLKMRGQAFIIFKEISSATNAMRT 68
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
MQGFPFYDKPMRI+YSKTDSD+I+K+KGTF ERPK+V KQP P++ E KK+KK
Sbjct: 69 MQGFPFYDKPMRIKYSKTDSDMIAKLKGTFQERPKRV-KQPKPIQ--TEDKKAKK----- 120
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLS 189
+ + EQPPNQILFLTNLPEET+EMMLS
Sbjct: 121 ---------------------LKNAGEVGATNNSATAEQPPNQILFLTNLPEETNEMMLS 159
Query: 190 MLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
MLFNQFPGFKEVRLVPNRHDIAFVEF E+QS AA+ AL GFKITPTHAMKISFAKK
Sbjct: 160 MLFNQFPGFKEVRLVPNRHDIAFVEFATELQSGAAREALQGFKITPTHAMKISFAKK 216
>gi|242247219|ref|NP_001156146.1| U1 small nuclear ribonucleoprotein A-like [Acyrthosiphon pisum]
gi|239790514|dbj|BAH71814.1| ACYPI003668 [Acyrthosiphon pisum]
Length = 224
Score = 299 bits (766), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 153/237 (64%), Positives = 182/237 (76%), Gaps = 26/237 (10%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I DLKKSLYAIFSQFGQI+DIVA+K +KM GQAFVIFK+I S+TNALR+
Sbjct: 10 IYINNLNEKIKKDDLKKSLYAIFSQFGQILDIVAMKGIKMNGQAFVIFKDITSSTNALRA 69
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
MQGFPFYDKPMRIQ++K++SD+I+K+KGTF+ER ++ E K ++KAAKE
Sbjct: 70 MQGFPFYDKPMRIQFAKSESDIIAKMKGTFVER-----QKKPKKPKDDEEAKKRRKAAKE 124
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLS 189
QAR + AQQ P ++ VPEQPPNQILFLTNLP+ET+EMMLS
Sbjct: 125 QARAL-AQQNN----------------PGGVSGGNVPEQPPNQILFLTNLPDETTEMMLS 167
Query: 190 MLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
MLFNQFPGFKEVRLVPNRHDIAFVEFENE QS AKL+L+GFKITPTHAMKI+FAKK
Sbjct: 168 MLFNQFPGFKEVRLVPNRHDIAFVEFENEHQSNTAKLSLNGFKITPTHAMKITFAKK 224
>gi|312372120|gb|EFR20150.1| hypothetical protein AND_20571 [Anopheles darlingi]
Length = 216
Score = 297 bits (761), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 158/221 (71%), Positives = 172/221 (77%), Gaps = 31/221 (14%)
Query: 27 SLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSK 86
SLYAIFSQFGQI+DIVA KTL+MRGQAF+IFKEI SATNA+R+MQGFPFYDKPMRI YSK
Sbjct: 26 SLYAIFSQFGQILDIVAYKTLRMRGQAFIIFKEIGSATNAMRTMQGFPFYDKPMRINYSK 85
Query: 87 TDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKK-KAAKEQARLMQAQQQQMQALS 145
TDSD+I+K+KGTF ERPK+VR QP PV P E KKSKK KAA E +
Sbjct: 86 TDSDMIAKLKGTFQERPKRVR-QPKPV--PTEEKKSKKQKAAGEVGATNNS--------- 133
Query: 146 VQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVP 205
ATA EQPPNQILFLTNLPEET+EMMLSMLFNQFPGFKEVRLVP
Sbjct: 134 ---------------ATA---EQPPNQILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVP 175
Query: 206 NRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
NRHDIAFVEF +E+QS AA+ AL GFKITPTHAMKISFAKK
Sbjct: 176 NRHDIAFVEFASEVQSGAAREALQGFKITPTHAMKISFAKK 216
>gi|255710361|gb|ACU31000.1| U1 small nuclear ribonucleoprotein A [Ochlerotatus triseriatus]
Length = 202
Score = 296 bits (757), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 153/220 (69%), Positives = 167/220 (75%), Gaps = 29/220 (13%)
Query: 27 SLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSK 86
SLYAIFSQFGQI+DIVALKTLKMRGQAF+IFKEI SATNA+R+MQGFPFYDKPMRI YSK
Sbjct: 12 SLYAIFSQFGQILDIVALKTLKMRGQAFIIFKEIGSATNAMRTMQGFPFYDKPMRINYSK 71
Query: 87 TDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSV 146
TDSDVI+K+KGTF ERPKK K P P++ E KKSKK+ E
Sbjct: 72 TDSDVIAKMKGTFKERPKKA-KAPKPIQQ--EDKKSKKQKNAEAG--------------- 113
Query: 147 QQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPN 206
A ++ EQPPNQILFLTNLPEET+EMMLSMLFNQFPGFKEVRLVPN
Sbjct: 114 -----------AAANSSATAEQPPNQILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPN 162
Query: 207 RHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
RHDIAFVEF E+QS AA+ AL GFKITPTHAMKISFAKK
Sbjct: 163 RHDIAFVEFATELQSGAAREALQGFKITPTHAMKISFAKK 202
>gi|91078752|ref|XP_968271.1| PREDICTED: similar to U1 small nuclear ribonucleoprotein A
[Tribolium castaneum]
gi|270003743|gb|EFA00191.1| hypothetical protein TcasGA2_TC003016 [Tribolium castaneum]
Length = 214
Score = 293 bits (751), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 161/240 (67%), Positives = 176/240 (73%), Gaps = 35/240 (14%)
Query: 11 TNFVYVTHISSTDLKK----SLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNA 66
N +Y+ +++ K+ SLYAIFSQFGQI+DIVALKTLKMRGQAFVIFKEI S+TNA
Sbjct: 6 NNTIYINNLNEKIKKEELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIQSSTNA 65
Query: 67 LRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKA 126
LRSMQGFPFYDKPMRIQY+KTDSDVISK+KGTF ERPKK+R P+ ED A KK K K
Sbjct: 66 LRSMQGFPFYDKPMRIQYAKTDSDVISKMKGTFQERPKKIRPPPSK-EDEAPKKKKKNKD 124
Query: 127 AKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEM 186
P + EQPPNQILFLTNLP+ETSEM
Sbjct: 125 ------------------------------PNRIPGGSNAEQPPNQILFLTNLPDETSEM 154
Query: 187 MLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
MLSMLFNQFPGFKEVRLVPNRHDIAFVEFENE+QS AAK AL GFKITPTHAMKISFAKK
Sbjct: 155 MLSMLFNQFPGFKEVRLVPNRHDIAFVEFENELQSGAAKDALQGFKITPTHAMKISFAKK 214
>gi|440355222|gb|AGC00413.1| SNF [Antheraea pernyi]
Length = 222
Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 159/238 (66%), Positives = 175/238 (73%), Gaps = 29/238 (12%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LKKSLYAIFSQFGQI+DIVALKTLKMRGQAFVIFKEI+SAT ALRS
Sbjct: 9 IYINNLNEKIKKDELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEISSATVALRS 68
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
MQGFPFYDKPMRIQYSKTDSDVI+KIKGTF ERPK+ P K +
Sbjct: 69 MQGFPFYDKPMRIQYSKTDSDVIAKIKGTFQERPKR----------PKMPKGT------- 111
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPA-PPAPMATAGVPEQPPNQILFLTNLPEETSEMML 188
++ + V +P A P + V EQPPNQILFLTNLP+ TSEMML
Sbjct: 112 ------DDSKKKKGKDVSRPGAVHGANAPGVLNNINV-EQPPNQILFLTNLPDGTSEMML 164
Query: 189 SMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
SMLFNQFPGFKEVRLVPNRHDIAFVEF NEMQSAAAK AL GFKITPTHAMKI+FAKK
Sbjct: 165 SMLFNQFPGFKEVRLVPNRHDIAFVEFGNEMQSAAAKEALQGFKITPTHAMKITFAKK 222
>gi|157103841|ref|XP_001648152.1| U1 small nuclear ribonucleoprotein A [Aedes aegypti]
gi|157133359|ref|XP_001656219.1| U1 small nuclear ribonucleoprotein A [Aedes aegypti]
gi|108869334|gb|EAT33559.1| AAEL014167-PA [Aedes aegypti]
gi|108881556|gb|EAT45781.1| AAEL002980-PA [Aedes aegypti]
Length = 216
Score = 288 bits (738), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 153/220 (69%), Positives = 164/220 (74%), Gaps = 29/220 (13%)
Query: 27 SLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSK 86
SLYAIFSQFGQI+DIVALKTLKMRGQAF+IFKEIASATNA+R+MQGFPFYDKPMRI YSK
Sbjct: 26 SLYAIFSQFGQILDIVALKTLKMRGQAFIIFKEIASATNAMRTMQGFPFYDKPMRINYSK 85
Query: 87 TDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSV 146
TDSDVI+K+KGTF ERPKK K P P+ E KKSKK+ E
Sbjct: 86 TDSDVIAKMKGTFKERPKKA-KAPKPIHQ--EDKKSKKQKNAEAGAAANNSATA------ 136
Query: 147 QQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPN 206
EQPPNQILFLTNLPEET+EMMLSMLFNQFPGFKEVRLVPN
Sbjct: 137 --------------------EQPPNQILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPN 176
Query: 207 RHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
RHDIAFVEF E+QS AA+ AL GFKITPTHAMKISFAKK
Sbjct: 177 RHDIAFVEFATELQSGAAREALQGFKITPTHAMKISFAKK 216
>gi|405974726|gb|EKC39350.1| U1 small nuclear ribonucleoprotein A [Crassostrea gigas]
Length = 541
Score = 288 bits (738), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 158/237 (66%), Positives = 184/237 (77%), Gaps = 17/237 (7%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ +++ +LKKSLYAIFSQFGQI+DIVA+KTLKMRGQAFVIFK+I SA +ALRS
Sbjct: 318 IYINNLNEKVKKDELKKSLYAIFSQFGQILDIVAMKTLKMRGQAFVIFKDINSANSALRS 377
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
MQGFPFY+KPMRIQYSK DSD+I+K+KGTF+ERPK+ P E E+KK KKKA +
Sbjct: 378 MQGFPFYEKPMRIQYSKKDSDIIAKMKGTFVERPKR------PKEHEPESKK-KKKANR- 429
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLS 189
QA QP ++ P P A +PEQPPNQILFLTNLPEET+EMMLS
Sbjct: 430 -----QAAATTAGIAPPAQPAMAAAPPAQPAAPTAIPEQPPNQILFLTNLPEETNEMMLS 484
Query: 190 MLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
MLFNQFPGFKEVRLVP RHDIAFVEFENE+QS AAK AL GFKITP++AMKIS+AKK
Sbjct: 485 MLFNQFPGFKEVRLVPGRHDIAFVEFENEVQSGAAKDALQGFKITPSNAMKISYAKK 541
>gi|357621621|gb|EHJ73396.1| U1 small nuclear ribonucleoprotein A [Danaus plexippus]
Length = 220
Score = 287 bits (734), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 154/220 (70%), Positives = 166/220 (75%), Gaps = 25/220 (11%)
Query: 27 SLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSK 86
SLYAIFSQFGQI++IVALKTLKMRGQAFVIFKEI+SAT ALRSMQGFPFYDKPMRIQY K
Sbjct: 26 SLYAIFSQFGQILEIVALKTLKMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRIQYCK 85
Query: 87 TDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSV 146
TDSDVI+K+KGTF ERPK+ + + KKK K+ R
Sbjct: 86 TDSDVIAKMKGTFQERPKRPKL--------PKGSDEKKKKNKDPNR-------------- 123
Query: 147 QQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPN 206
P V P+ + EQPPNQILFLTNLP+ETSEMMLSMLFNQFPGFKEVRLVPN
Sbjct: 124 --PNVPGFGQPSVLNNVNA-EQPPNQILFLTNLPDETSEMMLSMLFNQFPGFKEVRLVPN 180
Query: 207 RHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
RHDIAFVEF NEMQSAAAK AL GFKITPTHAMKISFAKK
Sbjct: 181 RHDIAFVEFANEMQSAAAKEALQGFKITPTHAMKISFAKK 220
>gi|291234607|ref|XP_002737237.1| PREDICTED: U1 small nuclear ribonucleoprotein A-like [Saccoglossus
kowalevskii]
Length = 249
Score = 285 bits (729), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 155/245 (63%), Positives = 179/245 (73%), Gaps = 16/245 (6%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ +++ +LKKSLYAIFSQFGQI+DIVA+KTLKMRGQAFVIFKEI+SATNALRS
Sbjct: 9 IYINNLNEKVKKDELKKSLYAIFSQFGQILDIVAMKTLKMRGQAFVIFKEISSATNALRS 68
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSK-KKAAK 128
MQGFPFYDKPMRI YSKTDSDVI+K+KGTF+ER ++ +K E+ A+ + K K
Sbjct: 69 MQGFPFYDKPMRIGYSKTDSDVIAKMKGTFVERKREKKK----TEEIAKTQAKKPKNMVS 124
Query: 129 EQARLMQAQQQQMQALSVQQPP-------VSQPAPPAPMATAGVPEQPPNQILFLTNLPE 181
A Q+ A Q P +SQP P A V EQPPN ILFLTNLPE
Sbjct: 125 GSAPGQQSGPGAGGAAGGAQIPNMGLPSLMSQPPPMQQAAPQSVQEQPPNNILFLTNLPE 184
Query: 182 ETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKI 241
ET+EMML MLFNQF FKEVRLVP RHDIAFVEFENE Q+ AK AL GFKITP++AMKI
Sbjct: 185 ETNEMMLQMLFNQFQAFKEVRLVPGRHDIAFVEFENETQAGVAKDALQGFKITPSNAMKI 244
Query: 242 SFAKK 246
SFAKK
Sbjct: 245 SFAKK 249
>gi|170070159|ref|XP_001869484.1| U1 small nuclear ribonucleoprotein A [Culex quinquefasciatus]
gi|167866053|gb|EDS29436.1| U1 small nuclear ribonucleoprotein A [Culex quinquefasciatus]
Length = 216
Score = 285 bits (728), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 149/220 (67%), Positives = 161/220 (73%), Gaps = 29/220 (13%)
Query: 27 SLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSK 86
SLYAIFSQFGQIMDIVALKTLKMRGQAF+IFKEI SATNA+R+MQGFPFYDKPMRI YSK
Sbjct: 26 SLYAIFSQFGQIMDIVALKTLKMRGQAFIIFKEIGSATNAMRTMQGFPFYDKPMRINYSK 85
Query: 87 TDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSV 146
+DSDVI+K+KGTF ERPKK R P P + K +K A A
Sbjct: 86 SDSDVIAKLKGTFKERPKKAR-VPKPAHQEEKKSKKQKNADSGSA--------------- 129
Query: 147 QQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPN 206
+ EQPPNQILFLTNLPEET+EMMLSMLFNQFPGFKEVRLVPN
Sbjct: 130 -------------ANNSATAEQPPNQILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPN 176
Query: 207 RHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
RHDIAFVEF E+QS AA+ AL GFKITPTHAMKISFAKK
Sbjct: 177 RHDIAFVEFATELQSGAAREALQGFKITPTHAMKISFAKK 216
>gi|225710606|gb|ACO11149.1| U1 small nuclear ribonucleoprotein A [Caligus rogercresseyi]
Length = 217
Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 152/238 (63%), Positives = 174/238 (73%), Gaps = 34/238 (14%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ +++ DLKKSLYAIFSQFGQI+DIVALKTLKMRGQAFVIFKEI S TNALRS
Sbjct: 9 IYINNLNEKVKKDDLKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEITSGTNALRS 68
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
MQGFPFYDKPMRI +SKTDSD+I+K+KGTF ERPKK S +
Sbjct: 69 MQGFPFYDKPMRISFSKTDSDIIAKLKGTFTERPKKA---------------SGDSKKAK 113
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVP-EQPPNQILFLTNLPEETSEMML 188
+ +A +Q+ AL+ A A P E PPNQILFLTNLP+ET+EMML
Sbjct: 114 KKAAKEAAARQLCALA--------------GANAVHPGEAPPNQILFLTNLPDETNEMML 159
Query: 189 SMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
SMLFNQFPGFKEVRLVPNRHDIAFVEFENE+QSAAA+ +L GFKITP +MKISFAKK
Sbjct: 160 SMLFNQFPGFKEVRLVPNRHDIAFVEFENEVQSAAARESLQGFKITPNASMKISFAKK 217
>gi|395859649|ref|XP_003802146.1| PREDICTED: U1 small nuclear ribonucleoprotein A isoform 2 [Otolemur
garnettii]
Length = 231
Score = 284 bits (726), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 145/237 (61%), Positives = 177/237 (74%), Gaps = 21/237 (8%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LKKSLYAIFSQFGQI+DI+ ++LKMRGQAFVIFKE++SATNALRS
Sbjct: 12 IYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRS 71
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
MQGFPFYDKPMRIQY+KTDSD+I+K+KGTF+ER +K K+ ++ AKK+ + A
Sbjct: 72 MQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPSAKKAVQGGA-- 129
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLS 189
+ Q PV PAP+ + + E PPN ILFLTNLPEET+E+MLS
Sbjct: 130 ----------AAPVVGAVQGPV-----PAPILSWQLSENPPNHILFLTNLPEETNELMLS 174
Query: 190 MLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
MLFNQFPGFKEVRLVP RHDIAFVEF+NE+Q+ AA+ AL GFKIT +AMKISFAKK
Sbjct: 175 MLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 231
>gi|321460285|gb|EFX71329.1| sans fille-like protein [Daphnia pulex]
Length = 227
Score = 283 bits (725), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 153/221 (69%), Positives = 169/221 (76%), Gaps = 20/221 (9%)
Query: 27 SLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSK 86
SLYAIFSQFGQI+DIVALKTLKMRGQAFVIFKE+ SATNALR MQGFPFYDKPMRIQY+K
Sbjct: 26 SLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEVTSATNALRGMQGFPFYDKPMRIQYAK 85
Query: 87 TDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSV 146
TDSDVI+K+KGTF ERP AK + K++ + QQQ + S
Sbjct: 86 TDSDVIAKMKGTFQERP---------------AKPKPEGEPKKKKKKESKQQQVVTPGSF 130
Query: 147 QQPPV-SQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVP 205
P PA + AGVPEQPPNQILFLTNLPEET+EMMLSMLF QFPGFKEVRLVP
Sbjct: 131 GGPATYGYPA----IGGAGVPEQPPNQILFLTNLPEETNEMMLSMLFTQFPGFKEVRLVP 186
Query: 206 NRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
RHDIAFVEFENE+QSA A+ +L GFKITPTH+MKISFAKK
Sbjct: 187 GRHDIAFVEFENEVQSAGARESLQGFKITPTHSMKISFAKK 227
>gi|443720886|gb|ELU10438.1| hypothetical protein CAPTEDRAFT_179768 [Capitella teleta]
Length = 218
Score = 283 bits (723), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 153/240 (63%), Positives = 175/240 (72%), Gaps = 37/240 (15%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LKKSL+AIFSQFG I+DIVALKTLKMRGQAFVIFK+I+SATNALRS
Sbjct: 9 IYINNLNEKIKKDELKKSLFAIFSQFGHIIDIVALKTLKMRGQAFVIFKDISSATNALRS 68
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERP---KKVRKQPAPVEDPAEAKKSKKKA 126
MQGFPFYDKPMRI YSK DSD I+K+KGTF+ERP KK ++ APV KKK
Sbjct: 69 MQGFPFYDKPMRINYSKKDSDAIAKMKGTFVERPKKKKKEDEEDAPV---------KKKK 119
Query: 127 AKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEM 186
+K Q R T G+P+QPP+ ILFLTNLPEET+EM
Sbjct: 120 SKAQRREAANAAA---------------------NTGGMPDQPPHHILFLTNLPEETTEM 158
Query: 187 MLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
MLSMLFNQFPGF+EVRLVP RHDIAFVEFENE+Q+ AAK AL GFKITPT+AMKISFAKK
Sbjct: 159 MLSMLFNQFPGFREVRLVPGRHDIAFVEFENEVQAGAAKDALQGFKITPTNAMKISFAKK 218
>gi|290562822|gb|ADD38806.1| U1 small nuclear ribonucleoprotein A [Lepeophtheirus salmonis]
Length = 217
Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 150/237 (63%), Positives = 170/237 (71%), Gaps = 32/237 (13%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ +++ DLKKSLYAIFSQFGQI++IVALKTLKMRGQAFVIFKEI SATNA+RS
Sbjct: 9 IYINNLNEKVKKEDLKKSLYAIFSQFGQILEIVALKTLKMRGQAFVIFKEITSATNAMRS 68
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
MQGFPFYDKPMRI +SKTDSDVI+KIKGT+ ERPKK A SKK +
Sbjct: 69 MQGFPFYDKPMRIAFSKTDSDVIAKIKGTYQERPKKA------------ASDSKKAKKRA 116
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLS 189
Q + + P E PPNQILFLTNLP+ET+EMMLS
Sbjct: 117 AKEAAARQICALAGANAVHP----------------GEAPPNQILFLTNLPDETNEMMLS 160
Query: 190 MLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
MLFNQFPGFKEVRLVPNRHDIAFVEFENE+QSAAA+ +L GFKITP +MKISFAKK
Sbjct: 161 MLFNQFPGFKEVRLVPNRHDIAFVEFENEVQSAAARGSLQGFKITPNASMKISFAKK 217
>gi|225719260|gb|ACO15476.1| U1 small nuclear ribonucleoprotein A [Caligus clemensi]
Length = 217
Score = 280 bits (717), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 152/238 (63%), Positives = 174/238 (73%), Gaps = 34/238 (14%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ +++ DLKKSLYAIFSQFGQI+DIVALKTLKMRGQAFVIFKEI SATNALRS
Sbjct: 9 IYINNLNGKVRKDDLKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEITSATNALRS 68
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
MQGFPFYDKPMRI +SK+DSDVI+KIKGTF ERP K + +
Sbjct: 69 MQGFPFYDKPMRITFSKSDSDVIAKIKGTFTERP---------------KKAAGDSKKAK 113
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVP-EQPPNQILFLTNLPEETSEMML 188
+ +A +Q+ AL+ A A P E PPNQILFLTNLP+ET+EMML
Sbjct: 114 KKAAKEAAARQLCALA--------------GANAAHPGEAPPNQILFLTNLPDETNEMML 159
Query: 189 SMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
SMLFNQFPGFKEVRLVPNRHDIAFVEFENE+QSAAA+ +L GFKITP +MKISFAKK
Sbjct: 160 SMLFNQFPGFKEVRLVPNRHDIAFVEFENEVQSAAARESLQGFKITPNASMKISFAKK 217
>gi|426388779|ref|XP_004060810.1| PREDICTED: U1 small nuclear ribonucleoprotein A isoform 2 [Gorilla
gorilla gorilla]
Length = 229
Score = 279 bits (713), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 145/237 (61%), Positives = 178/237 (75%), Gaps = 23/237 (9%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LKKSLYAIFSQFGQI+DI+ ++LKMRGQAFVIFKE++SATNALRS
Sbjct: 12 IYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRS 71
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
MQGFPFYDKPMRIQY+KTDSD+I+K+KGTF+ER +K R++ P KS++ A +
Sbjct: 72 MQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRK-REKRKP--------KSQETPATK 122
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLS 189
+A ++AL + P PP + E PPN ILFLTNLPEET+E+MLS
Sbjct: 123 KAGQYYGSPTGLRALVL----TDSPTPPQ------LSENPPNHILFLTNLPEETNELMLS 172
Query: 190 MLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
MLFNQFPGFKEVRLVP RHDIAFVEF+NE+Q+ AA+ AL GFKIT +AMKISFAKK
Sbjct: 173 MLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 229
>gi|225719682|gb|ACO15687.1| U1 small nuclear ribonucleoprotein A [Caligus clemensi]
Length = 217
Score = 279 bits (713), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 152/238 (63%), Positives = 174/238 (73%), Gaps = 34/238 (14%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ +++ DLKKSLYAIFSQFGQI+DIVALKTLKMRGQAFVIFKEI SATNALRS
Sbjct: 9 IYINNLNEKVKKDDLKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEITSATNALRS 68
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
MQGFPFYDKPMRI +SK+DSDVI+KIKGTF ERP K + +
Sbjct: 69 MQGFPFYDKPMRITFSKSDSDVIAKIKGTFTERP---------------KKAAGDSKKAK 113
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVP-EQPPNQILFLTNLPEETSEMML 188
+ +A +Q+ AL+ A A P E PPNQILFLTNLP+ET+EMML
Sbjct: 114 KKAAKEAAARQLCALA--------------GANAVHPGEAPPNQILFLTNLPDETNEMML 159
Query: 189 SMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
SMLFNQFPGFKEVRLVPNRHDIAFVEFENE+QSAAA+ +L GFKITP +MKISFAKK
Sbjct: 160 SMLFNQFPGFKEVRLVPNRHDIAFVEFENEVQSAAARESLQGFKITPNASMKISFAKK 217
>gi|442760027|gb|JAA72172.1| Putative spliceosomal protein snrnp-u1a/u2b [Ixodes ricinus]
Length = 239
Score = 277 bits (708), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 149/232 (64%), Positives = 175/232 (75%), Gaps = 12/232 (5%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ +++ +LKKSLYAIFSQFGQI+DIVALKTLKMRGQAFV+FK++ SATNALRS
Sbjct: 9 IYINNLNEKVKKDELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVVFKDLNSATNALRS 68
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
MQGFPFYDKPMRIQYSKTDSD ++K+KGT++E RK+PA A+ + + KK+ K+
Sbjct: 69 MQGFPFYDKPMRIQYSKTDSDAVAKMKGTYVETQ---RKRPA-----ADGEAAPKKSKKK 120
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLS 189
+A A A Q +PEQPPNQILFLTNLPEET+EMMLS
Sbjct: 121 KAPQHVASATAAVAGPHLQSQPMMMMMAPGAMMGSLPEQPPNQILFLTNLPEETNEMMLS 180
Query: 190 MLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKI 241
MLFNQFPGFKEVRLVP RHDIAFVEFENE+QS+AAK AL GFKITP HAMKI
Sbjct: 181 MLFNQFPGFKEVRLVPGRHDIAFVEFENEIQSSAAKEALQGFKITPIHAMKI 232
>gi|332855731|ref|XP_003316404.1| PREDICTED: U1 small nuclear ribonucleoprotein A isoform 1 [Pan
troglodytes]
Length = 227
Score = 277 bits (708), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 145/238 (60%), Positives = 173/238 (72%), Gaps = 27/238 (11%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LKKSLYAIFSQFGQI+DI+ ++LKMRGQAFVIFKE++SATNALRS
Sbjct: 12 IYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRS 71
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQ-PAPVEDPAEAKKSKKKAAK 128
MQGFPFYDKPMRIQY+KTDSD+I+K+KGTF+ER +K K+ P E PA K
Sbjct: 72 MQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKA------- 124
Query: 129 EQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMML 188
++AL + P PP + E PPN ILFLTNLPEET+E+ML
Sbjct: 125 -----YYGSPTGLRALVL----TDSPTPPQ------LSENPPNHILFLTNLPEETNELML 169
Query: 189 SMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
SMLFNQFPGFKEVRLVP RHDIAFVEF+NE+Q+ AA+ AL GFKIT +AMKISFAKK
Sbjct: 170 SMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 227
>gi|225713086|gb|ACO12389.1| U1 small nuclear ribonucleoprotein A [Lepeophtheirus salmonis]
Length = 217
Score = 275 bits (704), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 150/238 (63%), Positives = 174/238 (73%), Gaps = 34/238 (14%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ +++ DLKKSLYAIFSQFGQI++IVALKTLKMRGQAFVIFKEI SATNA+RS
Sbjct: 9 IYINNLNEKVKKEDLKKSLYAIFSQFGQILEIVALKTLKMRGQAFVIFKEITSATNAMRS 68
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
MQGFPFYDKPMRI +SKTDSDVI+KIKGT+ ERP K + +
Sbjct: 69 MQGFPFYDKPMRIAFSKTDSDVIAKIKGTYQERP---------------KKAASDSKKAK 113
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVP-EQPPNQILFLTNLPEETSEMML 188
+ +A +Q+ AL+ A A P E PPNQILFLTNLP+ET+EMML
Sbjct: 114 KKAAKEAAARQICALA--------------GANAVHPGEAPPNQILFLTNLPDETNEMML 159
Query: 189 SMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
SMLFNQFPGFKEVRLVPNRHDIAFVEFENE+QSAAA+ +L GFKITP +MKISFAKK
Sbjct: 160 SMLFNQFPGFKEVRLVPNRHDIAFVEFENEVQSAAARESLQGFKITPNASMKISFAKK 217
>gi|62857647|ref|NP_001016784.1| small nuclear ribonucleoprotein polypeptide A [Xenopus (Silurana)
tropicalis]
gi|60618430|gb|AAH90598.1| small nuclear ribonucleoprotein polypeptide A [Xenopus (Silurana)
tropicalis]
gi|89273875|emb|CAJ82017.1| small nuclear ribonucleoprotein polypeptide A [Xenopus (Silurana)
tropicalis]
Length = 282
Score = 274 bits (700), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 151/274 (55%), Positives = 184/274 (67%), Gaps = 38/274 (13%)
Query: 11 TNFVYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNA 66
N +Y+ + I +LKKSLYAIFSQFGQI+DI+ ++LKMRGQAFVIFKEI+SATNA
Sbjct: 9 NNTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEISSATNA 68
Query: 67 LRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERP------KKVRKQPAPVEDPAEAK 120
LRSMQGFPFYDKPMRIQYSK+DSD+I+K+KGT++ER +KV+ Q AP A
Sbjct: 69 LRSMQGFPFYDKPMRIQYSKSDSDIIAKMKGTYVERDRKRQEKRKVKGQEAPGVKKALPG 128
Query: 121 KSKKKAAKEQARLMQ-----AQQQQMQALSVQQPPVSQPA--PPAPMATAGVP------- 166
+ Q MQ Q +M ++ Q P + P PP MA +P
Sbjct: 129 AALLPGVPGQMAGMQNIPGMTQAPRMMHMAGQAPYMHHPGMMPPPGMAPGQIPPGGMPHG 188
Query: 167 --------------EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAF 212
E PPN ILFLTNLPEET+E+MLSMLFNQFPGFKEVRLVP RHDIAF
Sbjct: 189 HLMPGQMAPMQPISENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAF 248
Query: 213 VEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
VEF+NE+Q+ AA+ +L GFKIT +++MKISFAKK
Sbjct: 249 VEFDNEVQAGAARESLQGFKITQSNSMKISFAKK 282
>gi|395529330|ref|XP_003766769.1| PREDICTED: U1 small nuclear ribonucleoprotein A [Sarcophilus
harrisii]
Length = 241
Score = 274 bits (700), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 148/242 (61%), Positives = 177/242 (73%), Gaps = 21/242 (8%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LKKSLYAIFSQFGQI+DI+ ++LKMRGQAFVIFKEI+SATNALRS
Sbjct: 12 IYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEISSATNALRS 71
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQ-PAPVEDPAEAKKSKKKAAK 128
MQGFPFYDKPMRIQY+K+DSD+I+K+KGT++ER +K K+ P E PA KK+ A
Sbjct: 72 MQGFPFYDKPMRIQYAKSDSDIIAKMKGTYVERDRKREKRKPKGQETPA-VKKAVPGGAA 130
Query: 129 EQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVP----EQPPNQILFLTNLPEETS 184
M PP++Q AP +P E PPN ILFLTNLPEET+
Sbjct: 131 APVVAAVQPVPGM-------PPMTQ----APRIMHHLPGXLSENPPNHILFLTNLPEETN 179
Query: 185 EMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFA 244
E+MLSMLFNQFPGFKEVRLVP RHDIAFVEF+NE+Q+ AA+ AL GFKIT +AMKISFA
Sbjct: 180 ELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFA 239
Query: 245 KK 246
KK
Sbjct: 240 KK 241
>gi|332022263|gb|EGI62578.1| U2 small nuclear ribonucleoprotein B'' [Acromyrmex echinatior]
Length = 184
Score = 274 bits (700), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 147/198 (74%), Positives = 162/198 (81%), Gaps = 14/198 (7%)
Query: 49 MRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRK 108
MRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQY+KTDSD+I+K+KGTF ERPKK K
Sbjct: 1 MRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFAERPKKP-K 59
Query: 109 QPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQ 168
+ PV D EAK++KK+A KEQA+ +QQ A Q + + A VPEQ
Sbjct: 60 RVIPVAD-EEAKRAKKRA-KEQAK--HSQQIGYHASIPQH---------SGLVNAAVPEQ 106
Query: 169 PPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLAL 228
PPNQILFLTNLP+ETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENE+QS AAK AL
Sbjct: 107 PPNQILFLTNLPDETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEVQSGAAKDAL 166
Query: 229 HGFKITPTHAMKISFAKK 246
GFKITP+HAMKISFAKK
Sbjct: 167 QGFKITPSHAMKISFAKK 184
>gi|327260920|ref|XP_003215280.1| PREDICTED: u2 small nuclear ribonucleoprotein B''-like [Anolis
carolinensis]
Length = 224
Score = 273 bits (699), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 144/247 (58%), Positives = 173/247 (70%), Gaps = 24/247 (9%)
Query: 1 MNIILAHICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEI 60
M+I H N V I +LK+SLYA+FSQFG ++DIVALKT+KMRGQAFVI+KE+
Sbjct: 1 MDIRPNHTLYINNVN-DKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIYKEL 59
Query: 61 ASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPA-PVEDPAEA 119
S+TNALR +QGFPFY KPMRIQY+KTDSDVISK++GTF ++ K+ K+ +E A A
Sbjct: 60 GSSTNALRQLQGFPFYSKPMRIQYAKTDSDVISKMRGTFADKEKRREKKKTKSLEQSANA 119
Query: 120 KKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNL 179
K + A + + QA Q Q VP+ PPN ILFL NL
Sbjct: 120 AKKPNQGANQNSANTQANSQNQQ----------------------VPDNPPNYILFLNNL 157
Query: 180 PEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAM 239
PEET+EMMLSMLFNQFPGFKEVRLVP RHDIAFVEFENE Q+ AA+ AL GFKITP+HAM
Sbjct: 158 PEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENEGQAGAARDALQGFKITPSHAM 217
Query: 240 KISFAKK 246
KI++AKK
Sbjct: 218 KITYAKK 224
>gi|195448090|ref|XP_002071505.1| GK25839 [Drosophila willistoni]
gi|194167590|gb|EDW82491.1| GK25839 [Drosophila willistoni]
Length = 216
Score = 273 bits (699), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 150/220 (68%), Positives = 164/220 (74%), Gaps = 29/220 (13%)
Query: 27 SLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSK 86
SLYAIFSQFGQI+DIVALKTLKMRGQAFVIFKEI SA+NALR+MQGFPFYDKPMRI YSK
Sbjct: 26 SLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIGSASNALRTMQGFPFYDKPMRIAYSK 85
Query: 87 TDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSV 146
+DSD+++K+KGTF ERPKKV+ + K KK A+ E A A S
Sbjct: 86 SDSDIVAKLKGTFKERPKKVKVTKVVPGTDDKKDKRKKPASTENA-----------APST 134
Query: 147 QQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPN 206
Q EQPPNQILFLTNLPEET+EMMLSMLFNQFPGFKEVRLVPN
Sbjct: 135 QT------------------EQPPNQILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPN 176
Query: 207 RHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
RHDIAFVEF E+QS AAK AL GFKITPTHAMKI+FAKK
Sbjct: 177 RHDIAFVEFTTELQSNAAKEALQGFKITPTHAMKITFAKK 216
>gi|387018112|gb|AFJ51174.1| u2 small nuclear ribonucleoprotein B-like [Crotalus adamanteus]
Length = 225
Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 142/247 (57%), Positives = 172/247 (69%), Gaps = 23/247 (9%)
Query: 1 MNIILAHICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEI 60
M+I H N V I +LK+SLYA+FSQFG ++DIVALKT+KMRGQAF+IFKE+
Sbjct: 1 MDIRPNHTLYINNVN-DKIKKDELKRSLYALFSQFGHVVDIVALKTMKMRGQAFIIFKEL 59
Query: 61 ASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPA-PVEDPAEA 119
SATNALR +QGFPFY KPMRIQY+KTDS+VISK++GTF ++ K+ K+ +E A A
Sbjct: 60 GSATNALRQLQGFPFYGKPMRIQYAKTDSEVISKMRGTFADKEKRKEKKKTKSLEQAANA 119
Query: 120 KKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNL 179
K + A + + Q Q Q VP+ PPN ILFL NL
Sbjct: 120 NKKPNQGANQNSTNAQGNASQNQQ---------------------VPDNPPNHILFLNNL 158
Query: 180 PEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAM 239
PEET+EMMLSMLFNQFPGFKEVRLVP RHDI+FVEFENE Q+ AA+ AL GFKITP+HAM
Sbjct: 159 PEETNEMMLSMLFNQFPGFKEVRLVPGRHDISFVEFENEGQAGAARDALQGFKITPSHAM 218
Query: 240 KISFAKK 246
KI++AKK
Sbjct: 219 KITYAKK 225
>gi|195134172|ref|XP_002011511.1| snf [Drosophila mojavensis]
gi|193906634|gb|EDW05501.1| snf [Drosophila mojavensis]
Length = 216
Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 147/220 (66%), Positives = 165/220 (75%), Gaps = 29/220 (13%)
Query: 27 SLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSK 86
SLYAIFSQFGQI+DIVALKTLKMRGQAFVIFKEI SA+NALR+MQGFPFYDKPMRI YSK
Sbjct: 26 SLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIGSASNALRTMQGFPFYDKPMRIAYSK 85
Query: 87 TDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSV 146
+DSD+++K+KGT+ ERPKKV+ + K KK+++ E A
Sbjct: 86 SDSDIVAKLKGTYKERPKKVKPPKPVPGVEEKKDKKKKQSSAENAN-------------- 131
Query: 147 QQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPN 206
P +Q EQPPNQILFLTNLPEET+EMMLSMLFNQFPGFKEVRLVPN
Sbjct: 132 ---PNTQ------------TEQPPNQILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPN 176
Query: 207 RHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
RHDIAFVEF E+QS AAK AL GFKITPTHAMKI+FAKK
Sbjct: 177 RHDIAFVEFTTELQSNAAKEALQGFKITPTHAMKITFAKK 216
>gi|148222234|ref|NP_001080089.1| U1 small nuclear ribonucleoprotein A [Xenopus laevis]
gi|27924189|gb|AAH44979.1| Snf protein [Xenopus laevis]
Length = 282
Score = 270 bits (690), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 152/274 (55%), Positives = 184/274 (67%), Gaps = 38/274 (13%)
Query: 11 TNFVYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNA 66
N +Y+ + I +LKKSLYAIFSQFGQI+DI+ + LKMRGQAFVIFKE +SATNA
Sbjct: 9 NNTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRNLKMRGQAFVIFKETSSATNA 68
Query: 67 LRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVR-KQPAPVEDPAEAKKSKKK 125
LRSMQGFPFYDKPMRIQYSKTDSD+I+K+KGTF+ER +K + K+ V + K +
Sbjct: 69 LRSMQGFPFYDKPMRIQYSKTDSDIIAKMKGTFVERDRKRQEKRKVKVPEVQGVKNAMPG 128
Query: 126 AA-----KEQARLMQ-----AQQQQMQALSVQQPPVSQPA--PPAPMATAGVP------- 166
AA Q MQ Q +M ++ Q P + P PP MA +P
Sbjct: 129 AALLPGVPGQMAAMQNMPGMTQAPRMMHMAGQAPYMHHPGMMPPPGMAPGQMPPGGMPHG 188
Query: 167 --------------EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAF 212
E PPN ILFLTNLPEET+E+MLSMLFNQFPGFKEVRLVP RHDIAF
Sbjct: 189 QLMPGQMAPMQPISENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAF 248
Query: 213 VEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
VEF+NE+Q+ AA+ +L GFKIT +++MKISFAKK
Sbjct: 249 VEFDNEVQAGAARESLQGFKITQSNSMKISFAKK 282
>gi|1173326|sp|P45429.1|SNRPA_XENLA RecName: Full=U1 small nuclear ribonucleoprotein A; Short=U1 snRNP
A; Short=U1-A; Short=U1A
gi|65181|emb|CAA41021.1| U1 A protein [Xenopus laevis]
Length = 282
Score = 270 bits (690), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 152/274 (55%), Positives = 184/274 (67%), Gaps = 38/274 (13%)
Query: 11 TNFVYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNA 66
N +Y+ + I +LKKSLYAIFSQFGQI+DI+ + LKMRGQAFVIFKE +SATNA
Sbjct: 9 NNTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRNLKMRGQAFVIFKETSSATNA 68
Query: 67 LRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVR-KQPAPVEDPAEAKKSKKK 125
LRSMQGFPFYDKPMRIQYSKTDSD+I+K+KGTF+ER +K + K+ V + K +
Sbjct: 69 LRSMQGFPFYDKPMRIQYSKTDSDIIAKMKGTFVERDRKRQEKRKVKVPEVQGVKNAMPG 128
Query: 126 AA-----KEQARLMQ-----AQQQQMQALSVQQPPVSQPA--PPAPMATAGVP------- 166
AA Q MQ Q +M ++ Q P + P PP MA +P
Sbjct: 129 AALLPGVPGQMAAMQDMPGMTQAPRMMHMAGQAPYMHHPGMMPPPGMAPGQMPPGGMPHG 188
Query: 167 --------------EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAF 212
E PPN ILFLTNLPEET+E+MLSMLFNQFPGFKEVRLVP RHDIAF
Sbjct: 189 QLMPGQMAPMQPISENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAF 248
Query: 213 VEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
VEF+NE+Q+ AA+ +L GFKIT +++MKISFAKK
Sbjct: 249 VEFDNEVQAGAARESLQGFKITQSNSMKISFAKK 282
>gi|226372064|gb|ACO51657.1| U1 small nuclear ribonucleoprotein A [Rana catesbeiana]
Length = 279
Score = 270 bits (690), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 149/271 (54%), Positives = 182/271 (67%), Gaps = 35/271 (12%)
Query: 11 TNFVYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNA 66
N +Y+ + I +LKKSLYAIFSQFGQI+DI+ + LKMRGQAFVIFKE++SATNA
Sbjct: 9 NNTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRNLKMRGQAFVIFKEVSSATNA 68
Query: 67 LRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQ--------------PAP 112
LRSMQGFPFYDKPMRIQYSK+DSD+I+K+KGTF+ER ++ +++ AP
Sbjct: 69 LRSMQGFPFYDKPMRIQYSKSDSDIIAKMKGTFVERKRQEKRKGKVPEVPAVKKAIPGAP 128
Query: 113 VED-PAEAKKSKKKAAKEQA-RLMQ--AQQQQMQALSVQQPPVSQPA--PPAPMATAG-- 164
V+ P + QA R+M Q M + PP P PP M
Sbjct: 129 VQGMPGQIPGMANIPGMTQAPRMMHMPGQTPYMHHPGMMPPPGIGPGQIPPGGMPHGQMM 188
Query: 165 ---------VPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEF 215
+ E PPN ILFLTNLPEET+E+MLSMLFNQFPGFKEVRLVP RHDIAFVEF
Sbjct: 189 PGQMAPMQPISENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEF 248
Query: 216 ENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
ENE+Q+ AA+ +L GFKIT +++MKISFAKK
Sbjct: 249 ENEVQAGAARESLQGFKITQSNSMKISFAKK 279
>gi|440910289|gb|ELR60098.1| U1 small nuclear ribonucleoprotein A, partial [Bos grunniens mutus]
Length = 287
Score = 270 bits (689), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 152/276 (55%), Positives = 183/276 (66%), Gaps = 48/276 (17%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LKKSLYAIFSQFGQI+DI+ ++LKMRGQAFVIFKE++SATNALRS
Sbjct: 17 IYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRS 76
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQ-PAPVEDPAEAKKSKKKAAK 128
MQGFPFYDKPMRIQY+KTDSD+I+K+KGTF+ER +K K+ P E PA K + AA
Sbjct: 77 MQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPAAKKAVQGGAAA 136
Query: 129 EQARLMQAQQQQMQALS-----------------------------VQQPPVSQPA---- 155
+Q M ++ Q PP + P
Sbjct: 137 PVVGTVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQLPPGAMPPQQLM 196
Query: 156 ----PPA-PMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDI 210
PPA P++ E PPN ILFLTNLPEET+E+MLSMLFNQFPGFKEVRLVP RHDI
Sbjct: 197 PGQMPPAQPLS-----ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDI 251
Query: 211 AFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
AFVEF+NE+Q+ AA+ AL GFKIT +AMKISFAKK
Sbjct: 252 AFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 287
>gi|392883960|gb|AFM90812.1| u2 small nuclear ribonucleoprotein B-like protein [Callorhinchus
milii]
Length = 226
Score = 270 bits (689), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 138/237 (58%), Positives = 170/237 (71%), Gaps = 23/237 (9%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ +I+ +LK++LY++FSQFGQI+DIVALKT+KMRGQAFVIFKE+ SAT+ LR
Sbjct: 9 IYINNINDKIKKDELKRALYSLFSQFGQIVDIVALKTMKMRGQAFVIFKELCSATSGLRQ 68
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
+QGFPFY KPMRIQY+KTDSDV SK++GTF ++ KK K+ A ++ + A K
Sbjct: 69 LQGFPFYGKPMRIQYAKTDSDVTSKMRGTFADKEKKKEKKRAKAQEQSAANKKMN----- 123
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLS 189
L QP + A VP+ PPN ILFLTNLPEET+EMMLS
Sbjct: 124 --------------LGAAQPTTANSNQTTSSANQQVPDNPPNYILFLTNLPEETNEMMLS 169
Query: 190 MLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
MLFNQFPGFKEVRLVP RHDIAFVEFENE Q+ AA+ AL GF+ITP+HAMKI++AKK
Sbjct: 170 MLFNQFPGFKEVRLVPGRHDIAFVEFENEGQAGAARDALQGFRITPSHAMKITYAKK 226
>gi|449280001|gb|EMC87413.1| U2 small nuclear ribonucleoprotein B'' [Columba livia]
Length = 226
Score = 270 bits (689), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 141/237 (59%), Positives = 173/237 (72%), Gaps = 23/237 (9%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ +I+ +LK+SLYA+FSQFG ++DIVALKT+KMRGQAFVIFKE+ S+TNALR
Sbjct: 9 IYINNINDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQ 68
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
+QGFPFY KPMRIQY+KTDSD+ISK++GTF D + K+ KK + E
Sbjct: 69 LQGFPFYGKPMRIQYAKTDSDIISKMRGTF--------------ADKEKRKEKKKAKSLE 114
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLS 189
Q+ A ++ +Q + P S AP VP+ PPN ILFL NLPEET+EMMLS
Sbjct: 115 QS-ANAANKKVIQGAT----PNSASAPGTAAQNQQVPDNPPNYILFLNNLPEETNEMMLS 169
Query: 190 MLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
MLFNQFPGFKEVRLVP RHDIAFVEFENE Q+ AA+ AL GFKITP+HAMKI++AKK
Sbjct: 170 MLFNQFPGFKEVRLVPGRHDIAFVEFENENQAGAARDALQGFKITPSHAMKITYAKK 226
>gi|114051315|ref|NP_001039504.1| U1 small nuclear ribonucleoprotein A [Bos taurus]
gi|187607541|ref|NP_001119825.1| U1 small nuclear ribonucleoprotein A [Ovis aries]
gi|122142801|sp|Q2KIR1.1|SNRPA_BOVIN RecName: Full=U1 small nuclear ribonucleoprotein A; Short=U1 snRNP
A; Short=U1-A; Short=U1A
gi|86437996|gb|AAI12545.1| Small nuclear ribonucleoprotein polypeptide A [Bos taurus]
gi|184191137|gb|ACC76781.1| SNPRA [Ovis aries]
gi|296477802|tpg|DAA19917.1| TPA: U1 small nuclear ribonucleoprotein A [Bos taurus]
Length = 282
Score = 269 bits (688), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 152/276 (55%), Positives = 183/276 (66%), Gaps = 48/276 (17%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LKKSLYAIFSQFGQI+DI+ ++LKMRGQAFVIFKE++SATNALRS
Sbjct: 12 IYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRS 71
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQ-PAPVEDPAEAKKSKKKAAK 128
MQGFPFYDKPMRIQY+KTDSD+I+K+KGTF+ER +K K+ P E PA K + AA
Sbjct: 72 MQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPAAKKAVQGGAAA 131
Query: 129 EQARLMQAQQQQMQALS-----------------------------VQQPPVSQPA---- 155
+Q M ++ Q PP + P
Sbjct: 132 PVVGTVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQLPPGAMPPQQLM 191
Query: 156 ----PPA-PMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDI 210
PPA P++ E PPN ILFLTNLPEET+E+MLSMLFNQFPGFKEVRLVP RHDI
Sbjct: 192 PGQMPPAQPLS-----ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDI 246
Query: 211 AFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
AFVEF+NE+Q+ AA+ AL GFKIT +AMKISFAKK
Sbjct: 247 AFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282
>gi|116175267|ref|NP_001070690.1| U1 small nuclear ribonucleoprotein A [Sus scrofa]
gi|122131847|sp|Q06AA4.1|SNRPA_PIG RecName: Full=U1 small nuclear ribonucleoprotein A; Short=U1 snRNP
A; Short=U1-A; Short=U1A
gi|115371743|gb|ABI96196.1| SNRPA [Sus scrofa]
Length = 282
Score = 269 bits (687), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 152/276 (55%), Positives = 183/276 (66%), Gaps = 48/276 (17%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LKKSLYAIFSQFGQI+DI+ ++LKMRGQAFVIFKE++SATNALRS
Sbjct: 12 IYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRS 71
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQ-PAPVEDPAEAKKSKKKAAK 128
MQGFPFYDKPMRIQY+KTDSD+I+K+KGTF+ER +K K+ P E PA K + AA
Sbjct: 72 MQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPASKKAVQGGAAA 131
Query: 129 EQARLMQAQQQQMQALS-----------------------------VQQPPVSQPA---- 155
+Q M ++ Q PP + P
Sbjct: 132 PVVGAVQGPVPGMPPMTQTPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLM 191
Query: 156 ----PPA-PMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDI 210
PPA P++ E PPN ILFLTNLPEET+E+MLSMLFNQFPGFKEVRLVP RHDI
Sbjct: 192 PGQMPPAQPLS-----ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDI 246
Query: 211 AFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
AFVEF+NE+Q+ AA+ AL GFKIT +AMKISFAKK
Sbjct: 247 AFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282
>gi|410983004|ref|XP_003997834.1| PREDICTED: U1 small nuclear ribonucleoprotein A [Felis catus]
Length = 282
Score = 269 bits (687), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 152/276 (55%), Positives = 183/276 (66%), Gaps = 48/276 (17%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LKKSLYAIFSQFGQI+DI+ ++LKMRGQAFVIFKE++SATNALRS
Sbjct: 12 IYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRS 71
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQ-PAPVEDPAEAKKSKKKAAK 128
MQGFPFYDKPMRIQY+KTDSD+I+K+KGTF+ER +K K+ P E PA K + AA
Sbjct: 72 MQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPAAKKAVQGGAAA 131
Query: 129 EQARLMQAQQQQMQALS-----------------------------VQQPPVSQPA---- 155
+Q M ++ Q PP + P
Sbjct: 132 PVVGTVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLM 191
Query: 156 ----PPA-PMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDI 210
PPA P++ E PPN ILFLTNLPEET+E+MLSMLFNQFPGFKEVRLVP RHDI
Sbjct: 192 PGQMPPAQPLS-----ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDI 246
Query: 211 AFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
AFVEF+NE+Q+ AA+ AL GFKIT +AMKISFAKK
Sbjct: 247 AFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282
>gi|387018110|gb|AFJ51173.1| U1 small nuclear ribonucleoprotein A [Crotalus adamanteus]
Length = 281
Score = 269 bits (687), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 153/270 (56%), Positives = 180/270 (66%), Gaps = 37/270 (13%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LKKSLYAIFSQFGQI+DI+ + LKMRGQAFVIFKEI S+TNALRS
Sbjct: 12 IYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRNLKMRGQAFVIFKEICSSTNALRS 71
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
MQGFPFYDKPMRIQY+K DSD+I+K+KGTF+ER +K K+ ++ AKK AA
Sbjct: 72 MQGFPFYDKPMRIQYAKVDSDIIAKMKGTFVERDRKREKRKPKGQEAQVAKKQIPGAAAP 131
Query: 130 QARLMQAQQQQM----QALSVQQ-------------------------PPVSQPAP---P 157
A +Q M QA V PP + P P
Sbjct: 132 VAPSVQGTVPGMPPMNQAPCVMHHMPGQPPYMPPPGMMPPPGMAPGSIPPGAMPPQQMLP 191
Query: 158 APMATA-GVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFE 216
MATA + E PPN ILFLTNLPEET+E+MLSMLFNQFPGFKEVRLVP RHDIAFVEF+
Sbjct: 192 GQMATAQQLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFD 251
Query: 217 NEMQSAAAKLALHGFKITPTHAMKISFAKK 246
NE+Q+ AA+ AL GFKIT +AMKISFAKK
Sbjct: 252 NEVQAGAARDALQGFKITQNNAMKISFAKK 281
>gi|50738734|ref|XP_419331.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 2 [Gallus
gallus]
gi|326914835|ref|XP_003203728.1| PREDICTED: u2 small nuclear ribonucleoprotein B''-like [Meleagris
gallopavo]
Length = 226
Score = 269 bits (687), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 141/238 (59%), Positives = 172/238 (72%), Gaps = 25/238 (10%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ +I+ +LK+SLYA+FSQFG ++DIVALKT+KMRGQAFVIFKE+ S+TNALR
Sbjct: 9 IYINNINDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQ 68
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPA-PVEDPAEAKKSKKKAAK 128
+QGFPFY KPMRIQY+KTDSD+ISK++GTF ++ K+ K+ A +E A A K
Sbjct: 69 LQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKRKEKKKAKSLEQSANAANKK----- 123
Query: 129 EQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMML 188
++Q Q S AP VP+ PPN ILFL NLPEET+EMML
Sbjct: 124 ----IIQGATQN-----------STSAPGTSPQNQQVPDNPPNYILFLNNLPEETNEMML 168
Query: 189 SMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
SMLFNQFPGFKEVRLVP RHDIAFVEFENE Q+ AA+ AL GFKITP+HAMKI++AKK
Sbjct: 169 SMLFNQFPGFKEVRLVPGRHDIAFVEFENECQAGAARDALQGFKITPSHAMKITYAKK 226
>gi|73948310|ref|XP_533663.2| PREDICTED: U1 small nuclear ribonucleoprotein A [Canis lupus
familiaris]
gi|149722301|ref|XP_001499386.1| PREDICTED: u1 small nuclear ribonucleoprotein A-like [Equus
caballus]
gi|301776649|ref|XP_002923740.1| PREDICTED: u1 small nuclear ribonucleoprotein A-like [Ailuropoda
melanoleuca]
gi|403305332|ref|XP_003943221.1| PREDICTED: U1 small nuclear ribonucleoprotein A [Saimiri
boliviensis boliviensis]
gi|281340732|gb|EFB16316.1| hypothetical protein PANDA_012942 [Ailuropoda melanoleuca]
Length = 282
Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 152/276 (55%), Positives = 183/276 (66%), Gaps = 48/276 (17%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LKKSLYAIFSQFGQI+DI+ ++LKMRGQAFVIFKE++SATNALRS
Sbjct: 12 IYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRS 71
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQ-PAPVEDPAEAKKSKKKAAK 128
MQGFPFYDKPMRIQY+KTDSD+I+K+KGTF+ER +K K+ P E PA K + AA
Sbjct: 72 MQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPAAKKAVQGGAAA 131
Query: 129 EQARLMQAQQQQMQALS-----------------------------VQQPPVSQPA---- 155
+Q M ++ Q PP + P
Sbjct: 132 PVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLM 191
Query: 156 ----PPA-PMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDI 210
PPA P++ E PPN ILFLTNLPEET+E+MLSMLFNQFPGFKEVRLVP RHDI
Sbjct: 192 PGQMPPAQPLS-----ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDI 246
Query: 211 AFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
AFVEF+NE+Q+ AA+ AL GFKIT +AMKISFAKK
Sbjct: 247 AFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282
>gi|307190556|gb|EFN74543.1| U1 small nuclear ribonucleoprotein A [Camponotus floridanus]
Length = 184
Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 145/198 (73%), Positives = 159/198 (80%), Gaps = 14/198 (7%)
Query: 49 MRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRK 108
MRGQAFVIFKEIASA+NALRSMQGFPFYDKPMRIQY+KTDSDVI+K+KGTF ERPKK K
Sbjct: 1 MRGQAFVIFKEIASASNALRSMQGFPFYDKPMRIQYAKTDSDVIAKMKGTFAERPKKP-K 59
Query: 109 QPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQ 168
+ P D EAK++KK+A KEQA+ +QQ Q P + VPEQ
Sbjct: 60 RIIPAAD-EEAKRAKKRA-KEQAK--HSQQVGYHPNVPQHPG---------LVNTAVPEQ 106
Query: 169 PPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLAL 228
PPNQILFLTNLP+ETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENE+QS AAK AL
Sbjct: 107 PPNQILFLTNLPDETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEVQSGAAKDAL 166
Query: 229 HGFKITPTHAMKISFAKK 246
GFKITP+HAMKISFAKK
Sbjct: 167 QGFKITPSHAMKISFAKK 184
>gi|390479015|ref|XP_003735632.1| PREDICTED: LOW QUALITY PROTEIN: U1 small nuclear ribonucleoprotein
A-like [Callithrix jacchus]
Length = 275
Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 148/267 (55%), Positives = 179/267 (67%), Gaps = 37/267 (13%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LKKSLYAIFSQFGQI+DI+ ++LKMRGQAFVIFKE++SATNALRS
Sbjct: 12 IYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRS 71
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQ-PAPVEDPAEAKKSKKKAAK 128
MQGFPFYDKPMRIQY+KTDSD+I+K+KGTF+ER +K K+ P E PA K + AA
Sbjct: 72 MQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPAAKKAVQGGAA- 130
Query: 129 EQARLMQAQQQQMQALSVQQPP-----------------------------VSQPAPPAP 159
A ++ A Q + + PP Q
Sbjct: 131 --APVVGAVQGPVPGMPPMTPPRIMHHMPGQPPYMPPPDXPPRPAPGIPPGPPQHLLTGS 188
Query: 160 MATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEM 219
+ + E PPN ILFLTNLPEET+E+MLSMLFNQFPGFKEVRLVP RHDIAFVEF+NE+
Sbjct: 189 LTPPQLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEV 248
Query: 220 QSAAAKLALHGFKITPTHAMKISFAKK 246
Q+ AA+ AL GFKIT +AMKISFAKK
Sbjct: 249 QAGAARDALQGFKITQNNAMKISFAKK 275
>gi|410909846|ref|XP_003968401.1| PREDICTED: U1 small nuclear ribonucleoprotein A-like isoform 1
[Takifugu rubripes]
Length = 273
Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 146/276 (52%), Positives = 186/276 (67%), Gaps = 43/276 (15%)
Query: 7 HICVTNFVYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIAS 62
+ + + +Y+ + I +LKKSLYAIFSQFGQI+DI+ +T+KM+GQAFVIFKE+ S
Sbjct: 5 EVRLNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVARTMKMKGQAFVIFKEVNS 64
Query: 63 ATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKS 122
A+NALRSMQGFPFYDKPMRIQY+K DSD+I+K+KGT++ER +K K+ D + +KK+
Sbjct: 65 ASNALRSMQGFPFYDKPMRIQYAKQDSDIIAKMKGTYVERDRKKEKKKVKAPDSSGSKKN 124
Query: 123 KKKAAKEQARLMQAQQQQMQALSVQQPPVSQP---------------------------- 154
+ AA A ++ M + PP+SQ
Sbjct: 125 AQGAA---ASMVAGVPGGMAGM----PPMSQAPRMMHMPGQPPYMPPPGMMPPPGMAPGQ 177
Query: 155 APPAPMATAGVPEQ----PPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDI 210
PP M +P+Q PPN ILFLTNLPEET+E+MLSMLFNQFPGFKEVRLVP RHDI
Sbjct: 178 MPPGAMMPGQMPQQVSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDI 237
Query: 211 AFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
AFVEF+NE+Q+ AA+ AL GFKIT ++AMKISFAKK
Sbjct: 238 AFVEFDNEVQAGAARDALQGFKITQSNAMKISFAKK 273
>gi|444732044|gb|ELW72368.1| U1 small nuclear ribonucleoprotein A [Tupaia chinensis]
Length = 282
Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 150/278 (53%), Positives = 185/278 (66%), Gaps = 52/278 (18%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LKKSLYAIFSQFGQI+DI+ ++LKMRGQAFVIFKE++SATNALRS
Sbjct: 12 IYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRS 71
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
MQGFPFYDKPMRIQY+KTDSD+I+K+KGTF+ER +K K+ +D AKK+ + A
Sbjct: 72 MQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQDTPSAKKAVQGGAA- 130
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAP-------------------------PAPMATAG 164
A ++ A Q + + PP++Q AP P +
Sbjct: 131 -APVVGAVQGPVPGM----PPMTQ-APRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGA 184
Query: 165 VP----------------EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRH 208
+P E PPN ILFLTNLPEET+E+MLSMLFNQFPGFKEVRLVP RH
Sbjct: 185 IPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRH 244
Query: 209 DIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
DIAFVEF+NE+Q+ AA+ AL GFKIT +AMKISFAKK
Sbjct: 245 DIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282
>gi|432109445|gb|ELK33675.1| U1 small nuclear ribonucleoprotein A [Myotis davidii]
Length = 282
Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 153/276 (55%), Positives = 184/276 (66%), Gaps = 48/276 (17%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LKKSLYAIFSQFGQI+DI+ ++LKMRGQAFVIFKE++SATNALRS
Sbjct: 12 IYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRS 71
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQ-PAPVEDPAEAKKSKKKAA- 127
MQGFPFYDKPMRIQY+KTDSD+I+K+KGTF+ER +K K+ P E PA K + AA
Sbjct: 72 MQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPAAKKAVQGGAAA 131
Query: 128 ----------------KEQARLMQAQQQQMQALSV------------QQPPVSQP----- 154
+ R+M Q + Q PP + P
Sbjct: 132 PVVGAVPGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLM 191
Query: 155 ---APPA-PMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDI 210
PPA P++ E PPN ILFLTNLPEET+E+MLSMLFNQFPGFKEVRLVP RHDI
Sbjct: 192 PGQMPPAQPLS-----ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDI 246
Query: 211 AFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
AFVEF+NE+Q+ AA+ AL GFKIT +AMKISFAKK
Sbjct: 247 AFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282
>gi|351715411|gb|EHB18330.1| U1 small nuclear ribonucleoprotein A [Heterocephalus glaber]
Length = 282
Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 151/276 (54%), Positives = 183/276 (66%), Gaps = 48/276 (17%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LKKSLYAIFSQFGQI+DI+ ++LKMRGQAFVIFKE++SATNALRS
Sbjct: 12 IYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRS 71
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQ-PAPVEDPAEAKKSKKKAAK 128
MQGFPFYDKPMRIQY+KTDSD+I+K+KGTF+ER +K K+ P E P+ K + AA
Sbjct: 72 MQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPSAKKAVQGGAAA 131
Query: 129 EQARLMQAQQQQMQALS-----------------------------VQQPPVSQPA---- 155
+Q M ++ Q PP + P
Sbjct: 132 PVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQMPPGAMPPQQLM 191
Query: 156 ----PPA-PMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDI 210
PPA P++ E PPN ILFLTNLPEET+E+MLSMLFNQFPGFKEVRLVP RHDI
Sbjct: 192 PGQMPPAQPLS-----ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDI 246
Query: 211 AFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
AFVEF+NE+Q+ AA+ AL GFKIT +AMKISFAKK
Sbjct: 247 AFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282
>gi|56605690|ref|NP_001008304.1| U1 small nuclear ribonucleoprotein A [Rattus norvegicus]
gi|55562825|gb|AAH86331.1| Small nuclear ribonucleoprotein polypeptide A [Rattus norvegicus]
gi|149056537|gb|EDM07968.1| small nuclear ribonucleoprotein polypeptide A [Rattus norvegicus]
Length = 281
Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 153/275 (55%), Positives = 184/275 (66%), Gaps = 47/275 (17%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LKKSLYAIFSQFGQI+DI+ ++LKMRGQAFVIFKE++SATNALRS
Sbjct: 12 IYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRS 71
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQ-PAPVEDPAEAKKSKKKAA- 127
MQGFPFYDKPMRIQY+KTDSD+I+K+KGTF+ER +K K+ P E PA K + AA
Sbjct: 72 MQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPAAKKAVQGGAAA 131
Query: 128 ---------------KEQARLMQAQQQQMQALSV------------QQPPVSQPA----- 155
+ R+M Q + Q PP + P
Sbjct: 132 PVVGAVQPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMP 191
Query: 156 ---PPA-PMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIA 211
PPA P++ E PPN ILFLTNLPEET+E+MLSMLFNQFPGFKEVRLVP RHDIA
Sbjct: 192 GQMPPAQPLS-----ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIA 246
Query: 212 FVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
FVEF+NE+Q+ AA+ AL GFKIT +AMKISFAKK
Sbjct: 247 FVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 281
>gi|126723082|ref|NP_001075629.1| nuclear ribonucleoprotein A [Oryctolagus cuniculus]
gi|38641409|gb|AAR26269.1| nuclear ribonucleoprotein A [Oryctolagus cuniculus]
Length = 282
Score = 268 bits (685), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 151/276 (54%), Positives = 183/276 (66%), Gaps = 48/276 (17%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LKKSLYAIFSQFGQI+DI+ ++LKMRGQAFVIFKE++SATNALRS
Sbjct: 12 IYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRS 71
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQ-PAPVEDPAEAKKSKKKAAK 128
MQGFPFYDKPMRIQY+KTDSD+I+K+KGTF+ER +K K+ P E PA K + AA
Sbjct: 72 MQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPAAKKAVQGGAAA 131
Query: 129 EQARLMQAQQQQMQALS-----------------------------VQQPPVSQPA---- 155
+Q M ++ Q PP + P
Sbjct: 132 PVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQLPPGAMPPQQLM 191
Query: 156 ----PPA-PMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDI 210
PPA P++ E PPN ILFLTNLPEET+E+MLSMLFNQFPGFKEVRLVP RHDI
Sbjct: 192 PGQMPPAQPLS-----ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDI 246
Query: 211 AFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
AFVEF+NE+Q+ AA+ +L GFKIT +AMKISFAKK
Sbjct: 247 AFVEFDNEVQAGAARDSLQGFKITQNNAMKISFAKK 282
>gi|354486243|ref|XP_003505291.1| PREDICTED: LOW QUALITY PROTEIN: U1 small nuclear ribonucleoprotein
A-like [Cricetulus griseus]
Length = 284
Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 154/278 (55%), Positives = 184/278 (66%), Gaps = 50/278 (17%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LKKSLYAIFSQFGQI+DI+ ++LKMRGQAFVIFKE++SATNALRS
Sbjct: 12 IYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRS 71
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQ-PAPVEDPAEAKKSKKKAAK 128
MQGFPFYDKPMRIQY+KTDSD+I+K+KGTF+ER +K K+ P E PA K + AA
Sbjct: 72 MQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPAAKKAVQGGAAA 131
Query: 129 EQARLMQAQQ------QQMQALSV-------------------------QQPPVSQPA-- 155
+ A Q QA + Q PP + P
Sbjct: 132 PXXXXVGAVQPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQ 191
Query: 156 ------PPA-PMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRH 208
PPA P++ E PPN ILFLTNLPEET+E+MLSMLFNQFPGFKEVRLVP RH
Sbjct: 192 LMPGQMPPAQPLS-----ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRH 246
Query: 209 DIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
DIAFVEF+NE+Q+ AA+ AL GFKIT +AMKISFAKK
Sbjct: 247 DIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 284
>gi|4759156|ref|NP_004587.1| U1 small nuclear ribonucleoprotein A [Homo sapiens]
gi|134092|sp|P09012.3|SNRPA_HUMAN RecName: Full=U1 small nuclear ribonucleoprotein A; Short=U1 snRNP
A; Short=U1-A; Short=U1A
gi|315583598|pdb|3PGW|A Chain A, Crystal Structure Of Human U1 Snrnp
gi|315583607|pdb|3PGW|P Chain P, Crystal Structure Of Human U1 Snrnp
gi|37541|emb|CAA29653.1| unnamed protein product [Homo sapiens]
gi|340052|gb|AAA61245.1| U1 snRNP-specific protein A [Homo sapiens]
gi|12653273|gb|AAH00405.1| Small nuclear ribonucleoprotein polypeptide A [Homo sapiens]
gi|14249835|gb|AAH08290.1| Small nuclear ribonucleoprotein polypeptide A [Homo sapiens]
gi|119577399|gb|EAW56995.1| small nuclear ribonucleoprotein polypeptide A, isoform CRA_a [Homo
sapiens]
gi|208967436|dbj|BAG73732.1| small nuclear ribonucleoprotein polypeptide A [synthetic construct]
Length = 282
Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 151/276 (54%), Positives = 182/276 (65%), Gaps = 48/276 (17%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LKKSLYAIFSQFGQI+DI+ ++LKMRGQAFVIFKE++SATNALRS
Sbjct: 12 IYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRS 71
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQ-PAPVEDPAEAKKSKKKAAK 128
MQGFPFYDKPMRIQY+KTDSD+I+K+KGTF+ER +K K+ P E PA K + A
Sbjct: 72 MQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGAT 131
Query: 129 EQARLMQAQQQQMQALS-----------------------------VQQPPVSQPA---- 155
+Q M ++ Q PP + P
Sbjct: 132 PVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLM 191
Query: 156 ----PPA-PMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDI 210
PPA P++ E PPN ILFLTNLPEET+E+MLSMLFNQFPGFKEVRLVP RHDI
Sbjct: 192 PGQMPPAQPLS-----ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDI 246
Query: 211 AFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
AFVEF+NE+Q+ AA+ AL GFKIT +AMKISFAKK
Sbjct: 247 AFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282
>gi|426388777|ref|XP_004060809.1| PREDICTED: U1 small nuclear ribonucleoprotein A isoform 1 [Gorilla
gorilla gorilla]
Length = 282
Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 151/276 (54%), Positives = 182/276 (65%), Gaps = 48/276 (17%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LKKSLYAIFSQFGQI+DI+ ++LKMRGQAFVIFKE++SATNALRS
Sbjct: 12 IYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRS 71
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQ-PAPVEDPAEAKKSKKKAAK 128
MQGFPFYDKPMRIQY+KTDSD+I+K+KGTF+ER +K K+ P E PA K + A
Sbjct: 72 MQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGAA 131
Query: 129 EQARLMQAQQQQMQALS-----------------------------VQQPPVSQPA---- 155
+Q M ++ Q PP + P
Sbjct: 132 PVVGAVQGPVPGMPPMTQAPRIMHHLPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLM 191
Query: 156 ----PPA-PMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDI 210
PPA P++ E PPN ILFLTNLPEET+E+MLSMLFNQFPGFKEVRLVP RHDI
Sbjct: 192 PGQMPPAQPLS-----ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDI 246
Query: 211 AFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
AFVEF+NE+Q+ AA+ AL GFKIT +AMKISFAKK
Sbjct: 247 AFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282
>gi|383873129|ref|NP_001244434.1| U1 small nuclear ribonucleoprotein A [Macaca mulatta]
gi|114677331|ref|XP_512674.2| PREDICTED: U1 small nuclear ribonucleoprotein A isoform 2 [Pan
troglodytes]
gi|297704832|ref|XP_002829283.1| PREDICTED: U1 small nuclear ribonucleoprotein A [Pongo abelii]
gi|397482634|ref|XP_003812525.1| PREDICTED: U1 small nuclear ribonucleoprotein A [Pan paniscus]
gi|402905610|ref|XP_003915609.1| PREDICTED: U1 small nuclear ribonucleoprotein A [Papio anubis]
gi|355703564|gb|EHH30055.1| hypothetical protein EGK_10636 [Macaca mulatta]
gi|355755853|gb|EHH59600.1| hypothetical protein EGM_09749 [Macaca fascicularis]
gi|380784673|gb|AFE64212.1| U1 small nuclear ribonucleoprotein A [Macaca mulatta]
gi|383414025|gb|AFH30226.1| U1 small nuclear ribonucleoprotein A [Macaca mulatta]
gi|384943590|gb|AFI35400.1| U1 small nuclear ribonucleoprotein A [Macaca mulatta]
gi|410207170|gb|JAA00804.1| small nuclear ribonucleoprotein polypeptide A [Pan troglodytes]
gi|410287236|gb|JAA22218.1| small nuclear ribonucleoprotein polypeptide A [Pan troglodytes]
Length = 282
Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 151/276 (54%), Positives = 182/276 (65%), Gaps = 48/276 (17%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LKKSLYAIFSQFGQI+DI+ ++LKMRGQAFVIFKE++SATNALRS
Sbjct: 12 IYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRS 71
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQ-PAPVEDPAEAKKSKKKAAK 128
MQGFPFYDKPMRIQY+KTDSD+I+K+KGTF+ER +K K+ P E PA K + A
Sbjct: 72 MQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGAA 131
Query: 129 EQARLMQAQQQQMQALS-----------------------------VQQPPVSQPA---- 155
+Q M ++ Q PP + P
Sbjct: 132 PVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLM 191
Query: 156 ----PPA-PMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDI 210
PPA P++ E PPN ILFLTNLPEET+E+MLSMLFNQFPGFKEVRLVP RHDI
Sbjct: 192 PGQMPPAQPLS-----ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDI 246
Query: 211 AFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
AFVEF+NE+Q+ AA+ AL GFKIT +AMKISFAKK
Sbjct: 247 AFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282
>gi|387914214|gb|AFK10716.1| u2 small nuclear ribonucleoprotein B-like protein [Callorhinchus
milii]
gi|392878676|gb|AFM88170.1| u2 small nuclear ribonucleoprotein B-like protein [Callorhinchus
milii]
gi|392884228|gb|AFM90946.1| u2 small nuclear ribonucleoprotein B-like protein [Callorhinchus
milii]
gi|392884422|gb|AFM91043.1| u2 small nuclear ribonucleoprotein B-like protein [Callorhinchus
milii]
gi|392884424|gb|AFM91044.1| u2 small nuclear ribonucleoprotein B-like protein [Callorhinchus
milii]
Length = 226
Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 138/237 (58%), Positives = 170/237 (71%), Gaps = 23/237 (9%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ +I+ +LK++LY++FSQFGQI+DIVALKT+KMRGQAFVIFKE+ SAT+ LR
Sbjct: 9 IYINNINDKIKKDELKRALYSLFSQFGQIVDIVALKTMKMRGQAFVIFKELCSATSGLRQ 68
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
+QGFPFY KPMRIQY+KTDSDV SK++GTF ++ KK K+ A ++ + A K
Sbjct: 69 LQGFPFYGKPMRIQYAKTDSDVTSKMRGTFADKEKKKEKKKAKAQEQSAANKKMN----- 123
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLS 189
L QP + A VP+ PPN ILFLTNLPEET+EMMLS
Sbjct: 124 --------------LGAAQPTTANSNQTTSSANQQVPDNPPNYILFLTNLPEETNEMMLS 169
Query: 190 MLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
MLFNQFPGFKEVRLVP RHDIAFVEFENE Q+ AA+ AL GF+ITP+HAMKI++AKK
Sbjct: 170 MLFNQFPGFKEVRLVPGRHDIAFVEFENEGQAGAARDALQGFRITPSHAMKITYAKK 226
>gi|431920192|gb|ELK18231.1| U1 small nuclear ribonucleoprotein A [Pteropus alecto]
Length = 282
Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 153/276 (55%), Positives = 184/276 (66%), Gaps = 48/276 (17%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LKKSLYAIFSQFGQI+DI+ ++LKMRGQAFVIFKE++SATNALRS
Sbjct: 12 IYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRS 71
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQ-PAPVEDPAEAKKSKKKAA- 127
MQGFPFYDKPMRIQY+KTDSD+I+K+KGTF+ER +K K+ P E PA K + AA
Sbjct: 72 MQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPAAKKAVQGGAAA 131
Query: 128 ----------------KEQARLMQAQQQQMQALSV------------QQPPVSQP----- 154
+ R+M Q + Q PP + P
Sbjct: 132 PVVGAVPGPVPGMPPMTQAPRIMHHIPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLM 191
Query: 155 ---APPA-PMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDI 210
PPA P++ E PPN ILFLTNLPEET+E+MLSMLFNQFPGFKEVRLVP RHDI
Sbjct: 192 PGQMPPAQPLS-----ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDI 246
Query: 211 AFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
AFVEF+NE+Q+ AA+ AL GFKIT +AMKISFAKK
Sbjct: 247 AFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282
>gi|395859647|ref|XP_003802145.1| PREDICTED: U1 small nuclear ribonucleoprotein A isoform 1 [Otolemur
garnettii]
Length = 282
Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 151/276 (54%), Positives = 183/276 (66%), Gaps = 48/276 (17%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LKKSLYAIFSQFGQI+DI+ ++LKMRGQAFVIFKE++SATNALRS
Sbjct: 12 IYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRS 71
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQ-PAPVEDPAEAKKSKKKAAK 128
MQGFPFYDKPMRIQY+KTDSD+I+K+KGTF+ER +K K+ P E P+ K + AA
Sbjct: 72 MQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPSAKKAVQGGAAA 131
Query: 129 EQARLMQAQQQQMQALS-----------------------------VQQPPVSQPA---- 155
+Q M ++ Q PP + P
Sbjct: 132 PVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLM 191
Query: 156 ----PPA-PMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDI 210
PPA P++ E PPN ILFLTNLPEET+E+MLSMLFNQFPGFKEVRLVP RHDI
Sbjct: 192 PGQMPPAQPLS-----ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDI 246
Query: 211 AFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
AFVEF+NE+Q+ AA+ AL GFKIT +AMKISFAKK
Sbjct: 247 AFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282
>gi|348552486|ref|XP_003462058.1| PREDICTED: U1 small nuclear ribonucleoprotein A-like [Cavia
porcellus]
Length = 282
Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 151/276 (54%), Positives = 183/276 (66%), Gaps = 48/276 (17%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LKKSLYAIFSQFGQI+DI+ ++LKMRGQAFVIFKE++SATNALRS
Sbjct: 12 IYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRS 71
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQ-PAPVEDPAEAKKSKKKAAK 128
MQGFPFYDKPMRIQY+KTDSD+I+K+KGTF+ER +K K+ P E P+ K + AA
Sbjct: 72 MQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPSAKKAVQGGAAA 131
Query: 129 EQARLMQAQQQQMQALS-----------------------------VQQPPVSQPA---- 155
+Q M ++ Q PP + P
Sbjct: 132 PVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLM 191
Query: 156 ----PPA-PMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDI 210
PPA P++ E PPN ILFLTNLPEET+E+MLSMLFNQFPGFKEVRLVP RHDI
Sbjct: 192 PGQMPPAQPLS-----ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDI 246
Query: 211 AFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
AFVEF+NE+Q+ AA+ AL GFKIT +AMKISFAKK
Sbjct: 247 AFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282
>gi|449512082|ref|XP_002199484.2| PREDICTED: U2 small nuclear ribonucleoprotein B''-like [Taeniopygia
guttata]
Length = 221
Score = 267 bits (683), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 136/228 (59%), Positives = 166/228 (72%), Gaps = 26/228 (11%)
Query: 22 TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMR 81
++LK+SLYA+FSQFG ++DIVALKT+KMRGQAFVIFKE+ S+TNALR +QGFPFY KPM
Sbjct: 17 SELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQLQGFPFYGKPMH 76
Query: 82 IQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQM 141
IQY+KTDSD+ISK++GTF ++ E +K KKKA Q +Q
Sbjct: 77 IQYAKTDSDIISKMRGTFADK---------------ENRKEKKKA--------QTLEQSA 113
Query: 142 QALS---VQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGF 198
A + +Q + + P VP+ PP+ ILFL NLPEET+EMMLSMLFNQFPGF
Sbjct: 114 NAPNKKVIQGATQNSASAPGTTPQNQVPDNPPDYILFLNNLPEETNEMMLSMLFNQFPGF 173
Query: 199 KEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
KEVRLVP RHDIAFVEFENE Q+ AA+ AL GFKITP+HAMKI++AKK
Sbjct: 174 KEVRLVPGRHDIAFVEFENENQAGAARDALQGFKITPSHAMKITYAKK 221
>gi|189053747|dbj|BAG35999.1| unnamed protein product [Homo sapiens]
Length = 282
Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 150/276 (54%), Positives = 182/276 (65%), Gaps = 48/276 (17%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LKKSLYAIFSQFGQI+DI+ ++LKMRGQAFVIFKE++SATNALRS
Sbjct: 12 IYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRS 71
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQ-PAPVEDPAEAKKSKKKAAK 128
MQGFPFYDKPMRIQY++TDSD+I+K+KGTF+ER +K K+ P E PA K + A
Sbjct: 72 MQGFPFYDKPMRIQYARTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGAT 131
Query: 129 EQARLMQAQQQQMQALS-----------------------------VQQPPVSQPA---- 155
+Q M ++ Q PP + P
Sbjct: 132 PVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLM 191
Query: 156 ----PPA-PMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDI 210
PPA P++ E PPN ILFLTNLPEET+E+MLSMLFNQFPGFKEVRLVP RHDI
Sbjct: 192 PGQMPPAQPLS-----ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDI 246
Query: 211 AFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
AFVEF+NE+Q+ AA+ AL GFKIT +AMKISFAKK
Sbjct: 247 AFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282
>gi|417409102|gb|JAA51075.1| Putative spliceosomal protein snrnp-u1a/u2b, partial [Desmodus
rotundus]
Length = 258
Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 151/263 (57%), Positives = 179/263 (68%), Gaps = 44/263 (16%)
Query: 23 DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRI 82
+LKKSLYAIFSQFGQI+DI+ ++LKMRGQAFVIFKE++SATNALRSMQGFPFYDKPMRI
Sbjct: 1 ELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 60
Query: 83 QYSKTDSDVISKIKGTFMERPKKVRKQ-PAPVEDPAEAKKSKKKAA-------------- 127
QY+KTDSD+I+K+KGTF+ER +K K+ P E PA K + AA
Sbjct: 61 QYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPAAKKAVQGGAATPVVGAVPGPVPGM 120
Query: 128 ---KEQARLMQAQQQQMQALSV------------QQPPVSQP--------APPA-PMATA 163
+ R+M Q + Q PP + P PPA P++
Sbjct: 121 PPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLS-- 178
Query: 164 GVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAA 223
E PPN ILFLTNLPEET+E+MLSMLFNQFPGFKEVRLVP RHDIAFVEF+NE+Q+ A
Sbjct: 179 ---ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGA 235
Query: 224 AKLALHGFKITPTHAMKISFAKK 246
A+ AL GFKIT +AMKISFAKK
Sbjct: 236 ARDALQGFKITQNNAMKISFAKK 258
>gi|355721034|gb|AES07131.1| small nuclear ribonucleoprotein polypeptide A [Mustela putorius
furo]
Length = 281
Score = 267 bits (682), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 151/275 (54%), Positives = 182/275 (66%), Gaps = 48/275 (17%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LKKSLYAIFSQFGQI+DI+ ++LKMRGQAFVIFKE++SATNALRS
Sbjct: 12 IYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRS 71
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQ-PAPVEDPAEAKKSKKKAAK 128
MQGFPFYDKPMRIQY+KTDSD+I+K+KGTF+ER +K K+ P E PA K + AA
Sbjct: 72 MQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPAAKKAVQGGAAT 131
Query: 129 EQARLMQAQQQQMQALS-----------------------------VQQPPVSQPA---- 155
+Q M ++ Q PP + P
Sbjct: 132 PVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGALPPQQLM 191
Query: 156 ----PPA-PMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDI 210
PPA P++ E PPN ILFLTNLPEET+E+MLSMLFNQFPGFKEVRLVP RHDI
Sbjct: 192 PGQMPPAQPLS-----ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDI 246
Query: 211 AFVEFENEMQSAAAKLALHGFKITPTHAMKISFAK 245
AFVEF+NE+Q+ AA+ AL GFKIT +AMKISFAK
Sbjct: 247 AFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281
>gi|260827881|ref|XP_002608892.1| hypothetical protein BRAFLDRAFT_124249 [Branchiostoma floridae]
gi|229294246|gb|EEN64902.1| hypothetical protein BRAFLDRAFT_124249 [Branchiostoma floridae]
Length = 256
Score = 267 bits (682), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 152/231 (65%), Positives = 167/231 (72%), Gaps = 11/231 (4%)
Query: 27 SLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSK 86
SLYAIFSQFGQIMDIVALKTLKMRGQAFVIFK+I SAT ALRSMQGFPFYDKPMRI YSK
Sbjct: 26 SLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKDINSATQALRSMQGFPFYDKPMRIAYSK 85
Query: 87 TDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQ---- 142
TDSD I+K+KGT++ER KK R++ P + + + Q + QQ
Sbjct: 86 TDSDAIAKMKGTYVERKKKERQEKVPKKPAPRPQAAAPAQIPPQQQQRMQQQPPPMMQQQ 145
Query: 143 ------ALSVQQPPVS-QPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQF 195
A + QPP P P EQPPN ILFLTNLPEET+EMMLSMLFNQF
Sbjct: 146 MAPGGPAPGMGQPPQQMMPGMAQPSQPQPQAEQPPNNILFLTNLPEETTEMMLSMLFNQF 205
Query: 196 PGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
PGFKEVRLVP RHDIAFVEF+NEMQS AA+ AL GFKITPTHAMKISFAKK
Sbjct: 206 PGFKEVRLVPGRHDIAFVEFDNEMQSGAARDALQGFKITPTHAMKISFAKK 256
>gi|410909848|ref|XP_003968402.1| PREDICTED: U1 small nuclear ribonucleoprotein A-like isoform 2
[Takifugu rubripes]
Length = 279
Score = 266 bits (680), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 146/282 (51%), Positives = 186/282 (65%), Gaps = 49/282 (17%)
Query: 7 HICVTNFVYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIAS 62
+ + + +Y+ + I +LKKSLYAIFSQFGQI+DI+ +T+KM+GQAFVIFKE+ S
Sbjct: 5 EVRLNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVARTMKMKGQAFVIFKEVNS 64
Query: 63 ATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKS 122
A+NALRSMQGFPFYDKPMRIQY+K DSD+I+K+KGT++ER +K K+ D + +KK+
Sbjct: 65 ASNALRSMQGFPFYDKPMRIQYAKQDSDIIAKMKGTYVERDRKKEKKKVKAPDSSGSKKN 124
Query: 123 KKKAAKEQARLMQAQQQQMQALSVQQPPVSQP---------------------------- 154
+ AA A ++ M + PP+SQ
Sbjct: 125 AQGAA---ASMVAGVPGGMAGM----PPMSQAPRMMHMPGQPPYMPPPGMMPPPGMAPGQ 177
Query: 155 APPAPMATAGVPEQ----------PPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLV 204
PP M +P+Q PPN ILFLTNLPEET+E+MLSMLFNQFPGFKEVRLV
Sbjct: 178 MPPGAMMPGQMPQQVCCLLVVSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV 237
Query: 205 PNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
P RHDIAFVEF+NE+Q+ AA+ AL GFKIT ++AMKISFAKK
Sbjct: 238 PGRHDIAFVEFDNEVQAGAARDALQGFKITQSNAMKISFAKK 279
>gi|363731244|ref|XP_003640940.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 1 [Gallus
gallus]
Length = 207
Score = 266 bits (679), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 139/224 (62%), Positives = 165/224 (73%), Gaps = 21/224 (9%)
Query: 24 LKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83
LK+SLYA+FSQFG ++DIVALKT+KMRGQAFVIFKE+ S+TNALR +QGFPFY KPMRIQ
Sbjct: 4 LKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQLQGFPFYGKPMRIQ 63
Query: 84 YSKTDSDVISKIKGTFMERPKKVRKQPA-PVEDPAEAKKSKKKAAKEQARLMQAQQQQMQ 142
Y+KTDSD+ISK++GTF ++ K+ K+ A +E A A K ++Q Q
Sbjct: 64 YAKTDSDIISKMRGTFADKEKRKEKKKAKSLEQSANAANKK---------IIQGATQN-- 112
Query: 143 ALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVR 202
S AP VP+ PPN ILFL NLPEET+EMMLSMLFNQFPGFKEVR
Sbjct: 113 ---------STSAPGTSPQNQQVPDNPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVR 163
Query: 203 LVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
LVP RHDIAFVEFENE Q+ AA+ AL GFKITP+HAMKI++AKK
Sbjct: 164 LVPGRHDIAFVEFENECQAGAARDALQGFKITPSHAMKITYAKK 207
>gi|195396809|ref|XP_002057021.1| GJ16850 [Drosophila virilis]
gi|194146788|gb|EDW62507.1| GJ16850 [Drosophila virilis]
Length = 216
Score = 266 bits (679), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 146/220 (66%), Positives = 165/220 (75%), Gaps = 29/220 (13%)
Query: 27 SLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSK 86
SLYAIFSQFGQI+DIVALKTLKMRGQAFVIFKEI SA+NALR+MQGFPFYDKPMRI YSK
Sbjct: 26 SLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIGSASNALRTMQGFPFYDKPMRIAYSK 85
Query: 87 TDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSV 146
+DSD+++K+KGT+ ERPKKV+ + K KK+++ E +
Sbjct: 86 SDSDIVAKLKGTYKERPKKVKPPKPAPGAEEKKDKKKKQSSTENSN-------------- 131
Query: 147 QQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPN 206
P +Q EQPPNQILFLTNLPEET+EMMLSMLFNQFPGFKEVRLVPN
Sbjct: 132 ---PNTQ------------TEQPPNQILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPN 176
Query: 207 RHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
RHDIAFVEF E+QS AAK AL GFKITPTHAMKI+FAKK
Sbjct: 177 RHDIAFVEFTTELQSNAAKEALQGFKITPTHAMKITFAKK 216
>gi|291389004|ref|XP_002711008.1| PREDICTED: small nuclear ribonucleoprotein polypeptide B''
[Oryctolagus cuniculus]
Length = 225
Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 141/237 (59%), Positives = 171/237 (72%), Gaps = 24/237 (10%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LK+SLYA+FSQFG ++DIVALKT+KMRGQAFVIFKE+ S+TNALR
Sbjct: 9 IYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQ 68
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
+QGFPFY KPMRIQY+KTDSD+ISK++GTF ++ KK K+ A + A A +KK
Sbjct: 69 LQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQAAAAANKKPG--- 125
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLS 189
Q+ S S P P VP+ PPN ILFL NLPEET+EMMLS
Sbjct: 126 ----------QVIPNSANNQANSTPNPQ-------VPDYPPNYILFLNNLPEETNEMMLS 168
Query: 190 MLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
MLFNQFPGFKEVRLVP RHDIAFVEFEN+ Q+ AA+ AL GFKITP+HAMKI++AKK
Sbjct: 169 MLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>gi|114052106|ref|NP_056597.3| U1 small nuclear ribonucleoprotein A [Mus musculus]
gi|114052541|ref|NP_001040102.1| U1 small nuclear ribonucleoprotein A [Mus musculus]
gi|41017904|sp|Q62189.3|SNRPA_MOUSE RecName: Full=U1 small nuclear ribonucleoprotein A; Short=U1 snRNP
A; Short=U1-A; Short=U1A
gi|349004|gb|AAC37611.1| small nuclear RNA [Mus musculus]
gi|13096860|gb|AAH03229.1| Small nuclear ribonucleoprotein polypeptide A [Mus musculus]
gi|62740156|gb|AAH94006.1| Small nuclear ribonucleoprotein polypeptide A [Mus musculus]
gi|66794539|gb|AAH96648.1| Small nuclear ribonucleoprotein polypeptide A [Mus musculus]
gi|148692250|gb|EDL24197.1| mCG22754, isoform CRA_a [Mus musculus]
gi|148692251|gb|EDL24198.1| mCG22754, isoform CRA_a [Mus musculus]
Length = 287
Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 151/275 (54%), Positives = 182/275 (66%), Gaps = 47/275 (17%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LKKSLYAIFSQFGQI+DI+ + +KMRGQAFVIFKE+ SATNALRS
Sbjct: 18 IYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRIMKMRGQAFVIFKEVTSATNALRS 77
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQ-PAPVEDPAEAKKSKKKAAK 128
MQGFPFYDKPMRIQY+KTDSD+I+K+KGT++ER +K K+ P E PA K + AA
Sbjct: 78 MQGFPFYDKPMRIQYAKTDSDIIAKMKGTYVERDRKREKRKPKSQETPAAKKAVQGGAAA 137
Query: 129 ----------------EQARLMQAQQQQMQALSV------------QQPPVSQPA----- 155
+ R+M Q + Q PP + P
Sbjct: 138 PVVGAVQPVPGMPPMPQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMP 197
Query: 156 ---PPA-PMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIA 211
PPA P++ E PPN ILFLTNLPEET+E+MLSMLFNQFPGFKEVRLVP RHDIA
Sbjct: 198 GQMPPAQPLS-----ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIA 252
Query: 212 FVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
FVEF+NE+Q+ AA+ AL GFKIT +AMKISFAKK
Sbjct: 253 FVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 287
>gi|449495575|ref|XP_004176204.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' [Taeniopygia
guttata]
Length = 225
Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 139/238 (58%), Positives = 172/238 (72%), Gaps = 26/238 (10%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ +I+ +LK+SLYA+FSQFG ++DIVALKT+KMRGQAFVIFKE+ S+TNALR
Sbjct: 9 IYINNINDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQ 68
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPA-PVEDPAEAKKSKKKAAK 128
+QGFPFY KPMRIQY+KTDSD+ISK++GTF ++ K+ K+ A +E A A K
Sbjct: 69 LQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKRKEKKKAKTLEQSANAPNKK----- 123
Query: 129 EQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMML 188
++Q Q + + P VP+ PPN ILFL NLPEET+EMML
Sbjct: 124 ----VIQGATQ------------NSASAPGTTPQNQVPDNPPNYILFLNNLPEETNEMML 167
Query: 189 SMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
SMLFNQFPGFKEVRLVP RHDIAFVEFENE Q+ AA+ AL GFKITP+HAMKI++AKK
Sbjct: 168 SMLFNQFPGFKEVRLVPGRHDIAFVEFENENQAGAARDALQGFKITPSHAMKITYAKK 225
>gi|23956110|ref|NP_067310.1| U2 small nuclear ribonucleoprotein B'' [Mus musculus]
gi|52783420|sp|Q9CQI7.1|RU2B_MOUSE RecName: Full=U2 small nuclear ribonucleoprotein B''; Short=U2
snRNP B''
gi|12847289|dbj|BAB27510.1| unnamed protein product [Mus musculus]
gi|12851400|dbj|BAB29026.1| unnamed protein product [Mus musculus]
gi|20072417|gb|AAH26794.1| U2 small nuclear ribonucleoprotein B [Mus musculus]
gi|126035620|gb|ABN72533.1| U2 small nuclear ribonucleoprotein B [Mus spretus]
gi|148696479|gb|EDL28426.1| mCG19497, isoform CRA_c [Mus musculus]
Length = 225
Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 142/237 (59%), Positives = 172/237 (72%), Gaps = 24/237 (10%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LK+SLYA+FSQFG ++DIVALKT+KMRGQAFVIFKE+ S+TNALR
Sbjct: 9 IYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQ 68
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
+QGFPFY KPMRIQY+KTDSD+ISK++GTF ++ KK K+ A + A A +KK
Sbjct: 69 LQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTMEQAAAAANKKPG--- 125
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLS 189
Q A + Q A P P VP+ PPN ILFL NLPEET+EMMLS
Sbjct: 126 --------QGTPNAANTQ-----GTAAPNPQ----VPDYPPNYILFLNNLPEETNEMMLS 168
Query: 190 MLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
MLFNQFPGFKEVRLVP RHDIAFVEFEN+ Q+ AA+ AL GFKITP+HAMKI++AKK
Sbjct: 169 MLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>gi|194763787|ref|XP_001964014.1| GF21334 [Drosophila ananassae]
gi|190618939|gb|EDV34463.1| GF21334 [Drosophila ananassae]
Length = 216
Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 143/220 (65%), Positives = 160/220 (72%), Gaps = 29/220 (13%)
Query: 27 SLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSK 86
SLYAIFSQFGQI+DIVALKTLKMRGQAFV+FKEI SA+NALR+MQGFPFYDKPMRI YSK
Sbjct: 26 SLYAIFSQFGQILDIVALKTLKMRGQAFVVFKEIGSASNALRTMQGFPFYDKPMRIAYSK 85
Query: 87 TDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSV 146
+DSD+++KIKGTF ERPK A E+
Sbjct: 86 SDSDIVAKIKGTFKERPK------------KIKPPKPAPGADEKKD------------KK 121
Query: 147 QQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPN 206
++P ++ + P EQPPNQILFLTNLPEET+EMMLSMLFNQFPGFKEVRLVPN
Sbjct: 122 KKPTSAENSNPNTQT-----EQPPNQILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPN 176
Query: 207 RHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
RHDIAFVEF E+QS AAK AL GFKITPTHAMKI+FAKK
Sbjct: 177 RHDIAFVEFTTELQSNAAKEALQGFKITPTHAMKITFAKK 216
>gi|157819927|ref|NP_001102062.1| U2 small nuclear ribonucleoprotein B'' [Rattus norvegicus]
gi|354492046|ref|XP_003508163.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like [Cricetulus
griseus]
gi|149041257|gb|EDL95190.1| rCG27500, isoform CRA_c [Rattus norvegicus]
gi|197245976|gb|AAI68760.1| Small nuclear ribonucleoprotein polypeptide B'' [Rattus norvegicus]
Length = 225
Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 142/237 (59%), Positives = 171/237 (72%), Gaps = 24/237 (10%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LK+SLYA+FSQFG ++DIVALKT+KMRGQAFVIFKE+ S+TNALR
Sbjct: 9 IYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQ 68
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
+QGFPFY KPMRIQY+KTDSD+ISK++GTF ++ KK K+ A + A A +KK
Sbjct: 69 LQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTMEQAAAAANKKPG--- 125
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLS 189
Q A Q A P P VP+ PPN ILFL NLPEET+EMMLS
Sbjct: 126 QGTPNSANTQGNAA-------------PNPQ----VPDYPPNYILFLNNLPEETNEMMLS 168
Query: 190 MLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
MLFNQFPGFKEVRLVP RHDIAFVEFEN+ Q+ AA+ AL GFKITP+HAMKI++AKK
Sbjct: 169 MLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>gi|344250312|gb|EGW06416.1| U1 small nuclear ribonucleoprotein A [Cricetulus griseus]
Length = 291
Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 153/285 (53%), Positives = 184/285 (64%), Gaps = 57/285 (20%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LKKSLYAIFSQFGQI+DI+ ++LKMRGQAFVIFKE++SATNALRS
Sbjct: 12 IYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRS 71
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQ-PAPVEDPAEAKKSKKKAA- 127
MQGFPFYDKPMRIQY+KTDSD+I+K+KGTF+ER +K K+ P E PA K + AA
Sbjct: 72 MQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPAAKKAVQGGAAA 131
Query: 128 -------------------------KEQARLMQAQQQQMQALSV------------QQPP 150
+ R+M Q + Q PP
Sbjct: 132 PXXXXXGRCPACTVLLFSPQGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPP 191
Query: 151 VSQPA--------PPA-PMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEV 201
+ P PPA P++ E PPN ILFLTNLPEET+E+MLSMLFNQFPGFKEV
Sbjct: 192 GAMPPQQLMPGQMPPAQPLS-----ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEV 246
Query: 202 RLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
RLVP RHDIAFVEF+NE+Q+ AA+ AL GFKIT +AMKISFAKK
Sbjct: 247 RLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 291
>gi|351695324|gb|EHA98242.1| U2 small nuclear ribonucleoprotein B'' [Heterocephalus glaber]
Length = 224
Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 137/237 (57%), Positives = 169/237 (71%), Gaps = 25/237 (10%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LK+SLYA+FSQFG ++DIVALKT+KMRGQAFVIFKE+ S+TNALR
Sbjct: 9 IYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQ 68
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
+QGFPFY KPMRIQY+KTDSD+ISK++GTF ++ KK K+ A + +KK
Sbjct: 69 LQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTATTANKKPG--- 125
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLS 189
Q + + Q + P VP+ PPN ILFL NLPEET+EMMLS
Sbjct: 126 ---------QGISTTNTQGNATTNPQ---------VPDYPPNYILFLNNLPEETNEMMLS 167
Query: 190 MLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
MLFNQFPGFKEVRLVP RHDIAFVEFEN+ Q+ AA+ AL GFKITP+HAMKI++AKK
Sbjct: 168 MLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 224
>gi|344279401|ref|XP_003411476.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like [Loxodonta
africana]
Length = 225
Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 139/237 (58%), Positives = 169/237 (71%), Gaps = 24/237 (10%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LK+SLYA+FSQFG ++DIVALKT+KMRGQAFVIFKE+ S+TNALR
Sbjct: 9 IYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQ 68
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
+QGFPFY KPMRIQY+KTDSD+ISK++GTF ++ KK K+ A + A +KK
Sbjct: 69 LQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTAATTNKKPG--- 125
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLS 189
Q P S A + VP+ PPN ILFL NLPEET+EMMLS
Sbjct: 126 -----------------QGTPNSANAQGNSTPSPQVPDYPPNYILFLNNLPEETNEMMLS 168
Query: 190 MLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
MLFNQFPGFKEVRLVP RHDIAFVEFEN+ Q+ AA+ AL GFKITP+HAMKI++AKK
Sbjct: 169 MLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>gi|126329351|ref|XP_001371614.1| PREDICTED: u1 small nuclear ribonucleoprotein A-like [Monodelphis
domestica]
Length = 340
Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 151/272 (55%), Positives = 181/272 (66%), Gaps = 41/272 (15%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LKKSLYAIFSQFGQI+DI+ ++LKMRGQAFVIFKEI+SATNALRS
Sbjct: 71 IYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEISSATNALRS 130
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQ-PAPVEDPAEAKKSKKKAAK 128
MQGFPFYDKPMRIQY+K+DSD+I+K+KGT++ER +K K+ P E PA K AA
Sbjct: 131 MQGFPFYDKPMRIQYAKSDSDIIAKMKGTYVERDRKREKRKPKGQETPAVKKAVPGGAAA 190
Query: 129 ----------------EQARLMQAQQQQMQALSV------------QQPPVSQPAPPAPM 160
+ R+M Q + Q PP + PP M
Sbjct: 191 PVVAAVQPVPGMPPMTQAPRIMHHLPGQPPYMPPPGMIPPPGLAPGQIPPGAM--PPQQM 248
Query: 161 ATAGVP------EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVE 214
+P E PPN ILFLTNLPEET+E+MLSMLFNQFPGFKEVRLVP RHDIAFVE
Sbjct: 249 MPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVE 308
Query: 215 FENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
F+NE+Q+ AA+ AL GFKIT +AMKISFAKK
Sbjct: 309 FDNEVQAGAARDALQGFKITQNNAMKISFAKK 340
>gi|195340669|ref|XP_002036935.1| GM12396 [Drosophila sechellia]
gi|194131051|gb|EDW53094.1| GM12396 [Drosophila sechellia]
Length = 216
Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 146/220 (66%), Positives = 164/220 (74%), Gaps = 29/220 (13%)
Query: 27 SLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSK 86
SLYAIFSQFGQI+DIVALKTLKMRGQAFVIFKEI SA+NALR+MQGFPFYDKPM+I YSK
Sbjct: 26 SLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIGSASNALRTMQGFPFYDKPMQIAYSK 85
Query: 87 TDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSV 146
+DSD+++KIKGTF ERPKK++ + K KK ++ E +
Sbjct: 86 SDSDIVAKIKGTFKERPKKIKPPKPAPGTDEKKDKKKKPSSAENSN-------------- 131
Query: 147 QQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPN 206
P +Q EQPPNQILFLTNLPEET+EMMLSMLFNQFPGFKEVRLVPN
Sbjct: 132 ---PNTQ------------TEQPPNQILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPN 176
Query: 207 RHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
RHDIAFVEF E+QS AAK AL GFKITPTHAMKI+FAKK
Sbjct: 177 RHDIAFVEFTTELQSNAAKEALQGFKITPTHAMKITFAKK 216
>gi|395507829|ref|XP_003758221.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' [Sarcophilus
harrisii]
Length = 225
Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 142/238 (59%), Positives = 170/238 (71%), Gaps = 26/238 (10%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LK+SLYA+FSQFG ++DIVALKT+KMRGQAFVIFKE+ S+TNALR
Sbjct: 9 IYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQ 68
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPA-PVEDPAEAKKSKKKAAK 128
+QGFPFY KPMRIQY+KTDSDVISK++GTF ++ KK K+ A +E A A K A
Sbjct: 69 LQGFPFYGKPMRIQYAKTDSDVISKMRGTFADKEKKKEKKKAKSLEQTANAANKKPGQAA 128
Query: 129 EQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMML 188
+ Q S P P VP+ PPN ILFL NLPEET+EMML
Sbjct: 129 PNSANTQGN--------------STPNPQ-------VPDYPPNYILFLNNLPEETNEMML 167
Query: 189 SMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
SMLFNQFPGFKEVRLVP RHDIAFVEFEN+ Q+ AA+ AL GFKITP+HAMKI++AKK
Sbjct: 168 SMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>gi|17737284|ref|NP_511045.1| sans fille [Drosophila melanogaster]
gi|1173325|sp|P43332.1|SNRPA_DROME RecName: Full=U1 small nuclear ribonucleoprotein A; Short=U1 snRNP
A; Short=U1-A; Short=U1A; AltName: Full=Sex
determination protein snf
gi|157172|gb|AAA28441.1| small nuclear ribonucleoprotein [Drosophila melanogaster]
gi|463051|gb|AAA28903.1| nuclear protein [Drosophila melanogaster]
gi|7290566|gb|AAF46017.1| sans fille [Drosophila melanogaster]
gi|16769640|gb|AAL29039.1| LD45302p [Drosophila melanogaster]
gi|220944458|gb|ACL84772.1| snf-PA [synthetic construct]
gi|220954252|gb|ACL89669.1| snf-PA [synthetic construct]
Length = 216
Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 147/220 (66%), Positives = 164/220 (74%), Gaps = 29/220 (13%)
Query: 27 SLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSK 86
SLYAIFSQFGQI+DIVALKTLKMRGQAFVIFKEI SA+NALR+MQGFPFYDKPM+I YSK
Sbjct: 26 SLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIGSASNALRTMQGFPFYDKPMQIAYSK 85
Query: 87 TDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSV 146
+DSD+++KIKGTF ERPKKV+ + K KK ++ E +
Sbjct: 86 SDSDIVAKIKGTFKERPKKVKPPKPAPGTDEKKDKKKKPSSAENSN-------------- 131
Query: 147 QQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPN 206
P +Q EQPPNQILFLTNLPEET+EMMLSMLFNQFPGFKEVRLVPN
Sbjct: 132 ---PNAQ------------TEQPPNQILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPN 176
Query: 207 RHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
RHDIAFVEF E+QS AAK AL GFKITPTHAMKI+FAKK
Sbjct: 177 RHDIAFVEFTTELQSNAAKEALQGFKITPTHAMKITFAKK 216
>gi|359718900|ref|NP_001240769.1| U2 small nuclear ribonucleoprotein B'' [Equus caballus]
gi|328908863|gb|AEB61099.1| u2 small nuclear ribonucleoprotein B''-like protein [Equus
caballus]
Length = 225
Score = 263 bits (673), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 140/237 (59%), Positives = 169/237 (71%), Gaps = 24/237 (10%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LK+SLYA+FSQFG ++DIVALKT+KMRGQAFVIFKE+ S+TNALR
Sbjct: 9 IYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQ 68
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
+QGFPFY KPMRIQY+KTDSD+ISK++GTF ++ KK K+ A + +KK
Sbjct: 69 LQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTATTANKKPG--- 125
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLS 189
Q SV S P P VP+ PPN ILFL NLPEET+EMMLS
Sbjct: 126 ----------QGTPNSVNTQGNSTPNPQ-------VPDYPPNYILFLNNLPEETNEMMLS 168
Query: 190 MLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
MLFNQFPGFKEVRLVP RHDIAFVEFEN+ Q+ AA+ AL GFKITP+HAMKI++AKK
Sbjct: 169 MLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>gi|114681082|ref|XP_514523.2| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 5 [Pan
troglodytes]
gi|114681084|ref|XP_001137830.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 4 [Pan
troglodytes]
gi|296200238|ref|XP_002747509.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like isoform 2
[Callithrix jacchus]
gi|296200240|ref|XP_002747510.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like isoform 3
[Callithrix jacchus]
Length = 225
Score = 263 bits (673), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 140/237 (59%), Positives = 169/237 (71%), Gaps = 24/237 (10%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LK+SLYA+FSQFG ++DIVALKT+KMRGQAFVIFKE+ S+TNALR
Sbjct: 9 IYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQ 68
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
+QGFPFY KPMRIQY+KTDSD+ISK++GTF ++ KK K+ A + A +KK
Sbjct: 69 LQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTAATTNKKPG--- 125
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLS 189
Q S S P P VP+ PPN ILFL NLPEET+EMMLS
Sbjct: 126 ----------QGTPNSANTQGNSTPNPQ-------VPDYPPNYILFLNNLPEETNEMMLS 168
Query: 190 MLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
MLFNQFPGFKEVRLVP RHDIAFVEFEN+ Q+ AA+ AL GFKITP+HAMKI++AKK
Sbjct: 169 MLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>gi|444729539|gb|ELW69952.1| U2 small nuclear ribonucleoprotein B'' [Tupaia chinensis]
Length = 225
Score = 263 bits (673), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 140/237 (59%), Positives = 169/237 (71%), Gaps = 24/237 (10%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LK+SLYA+FSQFG ++DIVALKT+KMRGQAFVIFKE+ S+TNALR
Sbjct: 9 IYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQ 68
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
+QGFPFY KPMRIQY+KTDSD+ISK++GTF ++ KK K+ A + A +KK
Sbjct: 69 LQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQAATTANKKPG--- 125
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLS 189
Q S S P P VP+ PPN ILFL NLPEET+EMMLS
Sbjct: 126 ----------QGTPNSANTQGNSTPNPQ-------VPDYPPNYILFLNNLPEETNEMMLS 168
Query: 190 MLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
MLFNQFPGFKEVRLVP RHDIAFVEFEN+ Q+ AA+ AL GFKITP+HAMKI++AKK
Sbjct: 169 MLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>gi|195046460|ref|XP_001992159.1| GH24608 [Drosophila grimshawi]
gi|193893000|gb|EDV91866.1| GH24608 [Drosophila grimshawi]
Length = 216
Score = 263 bits (673), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 147/220 (66%), Positives = 163/220 (74%), Gaps = 29/220 (13%)
Query: 27 SLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSK 86
SLYAIFSQFGQI+DIVALKTLKMRGQAFVIFKEI SA+NALR+MQGFPFYDKPMRI YSK
Sbjct: 26 SLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIGSASNALRTMQGFPFYDKPMRIAYSK 85
Query: 87 TDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSV 146
+DSD+++K+KGT+ ERPKKV+ + K KK + E A
Sbjct: 86 SDSDIVAKLKGTYKERPKKVKPPKPAPGVEEKKDKKKKPSNAENAN-------------- 131
Query: 147 QQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPN 206
P +Q EQPPNQILFLTNLPEET+EMMLSMLFNQFPGFKEVRLVPN
Sbjct: 132 ---PNTQ------------TEQPPNQILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPN 176
Query: 207 RHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
RHDIAFVEF E+QS AAK AL GFKITPTHAMKI+FAKK
Sbjct: 177 RHDIAFVEFTTELQSNAAKEALQGFKITPTHAMKITFAKK 216
>gi|348581624|ref|XP_003476577.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like [Cavia
porcellus]
Length = 224
Score = 263 bits (672), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 140/237 (59%), Positives = 169/237 (71%), Gaps = 25/237 (10%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LK+SLYA+FSQFG ++DIVALKT+KMRGQAFVIFKE+ S+TNALR
Sbjct: 9 IYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQ 68
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
+QGFPFY KPMRIQY+KTDSD+ISK++GTF D + K+ KK E
Sbjct: 69 LQGFPFYGKPMRIQYAKTDSDIISKMRGTF--------------ADKEKKKEKKKAKTVE 114
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLS 189
Q M A ++ Q +S P P VP+ PPN ILFL NLPEET+EMMLS
Sbjct: 115 QT-AMTANKKPGQGISTAN--TQGNVAPNPQ----VPDYPPNYILFLNNLPEETNEMMLS 167
Query: 190 MLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
MLFNQFPGFKEVRLVP RHDIAFVEFEN+ Q+ AA+ AL GFKITP+HAMKI++AKK
Sbjct: 168 MLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 224
>gi|123994687|gb|ABM84945.1| small nuclear ribonucleoprotein polypeptide B'' [synthetic
construct]
gi|261861662|dbj|BAI47353.1| small nuclear ribonucleoprotein polypeptide B'' [synthetic
construct]
Length = 225
Score = 263 bits (672), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 139/237 (58%), Positives = 168/237 (70%), Gaps = 24/237 (10%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LK+SLYA+FSQFG ++DIVALKT+KMRGQAFVIFKE+ S+TNALR
Sbjct: 9 IYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQ 68
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
+QGFPFY KPMRIQY+KTDSD+ISK++GTF ++ KK K+ A + +KK
Sbjct: 69 LQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTATTTNKKSG--- 125
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLS 189
Q S S P P VP+ PPN ILFL NLPEET+EMMLS
Sbjct: 126 ----------QGTPNSANTQGNSTPNPQ-------VPDYPPNYILFLNNLPEETNEMMLS 168
Query: 190 MLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
MLFNQFPGFKEVRLVP RHDIAFVEFEN+ Q+ AA+ AL GFKITP+HAMKI++AKK
Sbjct: 169 MLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>gi|47225009|emb|CAF97424.1| unnamed protein product [Tetraodon nigroviridis]
Length = 272
Score = 263 bits (672), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 147/275 (53%), Positives = 182/275 (66%), Gaps = 44/275 (16%)
Query: 8 ICVTNFVYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASA 63
+ + + +Y+ + I +LKKSLYAIFSQFGQI+DI+ + +KM+GQAFVIFKE+ SA
Sbjct: 6 VRLNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRIMKMKGQAFVIFKEVNSA 65
Query: 64 TNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSK 123
+NALRSMQGFPFYDKPMRIQY+K DSD+I+K+KGT++ER +K K+ D SK
Sbjct: 66 SNALRSMQGFPFYDKPMRIQYAKQDSDIIAKMKGTYVERDRKKEKKKVKAPDSG----SK 121
Query: 124 KKAAKEQARLMQAQQQQMQALSVQQPPVSQP----------------------------A 155
K A A ++ M + PP+SQ
Sbjct: 122 KNAQAAAASMVAGVPGAMAGM----PPMSQAPRMMHMPGQPPYMPPPGMMPPPGMAPGQM 177
Query: 156 PPAPMATAGVPEQ----PPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIA 211
PP M +P+Q PPN ILFLTNLPEET+E+MLSMLFNQFPGFKEVRLVP RHDIA
Sbjct: 178 PPGAMMPGQMPQQVSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIA 237
Query: 212 FVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
FVEF+NE+Q+AAA+ AL GFKIT T+AMKISFAKK
Sbjct: 238 FVEFDNEVQAAAAREALQGFKITQTNAMKISFAKK 272
>gi|297706381|ref|XP_002830019.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 2 [Pongo
abelii]
Length = 225
Score = 263 bits (672), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 140/237 (59%), Positives = 168/237 (70%), Gaps = 24/237 (10%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LK+SLYA+FSQFG ++DIVALKT+KMRGQAFVIFKE+ S+TNALR
Sbjct: 9 IYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQ 68
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
+QGFPFY KPMRIQY+KTDSD+ISK++GTF ++ KK K+ A + SKK
Sbjct: 69 LQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTATTTSKKPG--- 125
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLS 189
Q S S P P VP+ PPN ILFL NLPEET+EMMLS
Sbjct: 126 ----------QGTPNSANTQGNSTPNPQ-------VPDYPPNYILFLNNLPEETNEMMLS 168
Query: 190 MLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
MLFNQFPGFKEVRLVP RHDIAFVEFEN+ Q+ AA+ AL GFKITP+HAMKI++AKK
Sbjct: 169 MLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>gi|55732648|emb|CAH93023.1| hypothetical protein [Pongo abelii]
Length = 225
Score = 263 bits (672), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 140/237 (59%), Positives = 168/237 (70%), Gaps = 24/237 (10%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LK+SLYA+FSQFG ++DIVALKT+KMRGQAFVIFKE+ S+TNALR
Sbjct: 9 IYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQ 68
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
+QGFPFY KPMRIQY+KTDSD+ISK++GTF ++ KK K+ A + SKK
Sbjct: 69 LQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKREKKKAKTVEQTATTTSKKPG--- 125
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLS 189
Q S S P P VP+ PPN ILFL NLPEET+EMMLS
Sbjct: 126 ----------QGTPNSANTQGNSTPNPQ-------VPDYPPNYILFLNNLPEETNEMMLS 168
Query: 190 MLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
MLFNQFPGFKEVRLVP RHDIAFVEFEN+ Q+ AA+ AL GFKITP+HAMKI++AKK
Sbjct: 169 MLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>gi|354542538|ref|NP_001238897.1| U2 small nuclear ribonucleoprotein B'' [Canis lupus familiaris]
Length = 225
Score = 263 bits (672), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 139/237 (58%), Positives = 168/237 (70%), Gaps = 24/237 (10%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LK+SLYA+FSQFG ++DIVALKT+KMRGQAFVIFKE+ S+TNALR
Sbjct: 9 IYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQ 68
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
+QGFPFY KPMRIQY+KTDSD+ISK++GTF ++ KK K+ A + SKK
Sbjct: 69 LQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTATTASKKPG--- 125
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLS 189
Q A + Q P VP+ PPN ILFL NLPEET+EMMLS
Sbjct: 126 --------QGTPNAANTQGNSTPNPQ---------VPDYPPNYILFLNNLPEETNEMMLS 168
Query: 190 MLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
MLFNQFPGFKEVRLVP RHDIAFVEFEN+ Q+ AA+ AL GFKITP+HAMKI++AKK
Sbjct: 169 MLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>gi|301787297|ref|XP_002929064.1| PREDICTED: u2 small nuclear ribonucleoprotein B''-like [Ailuropoda
melanoleuca]
gi|410954385|ref|XP_003983845.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 1 [Felis
catus]
gi|410954387|ref|XP_003983846.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 2 [Felis
catus]
gi|281346668|gb|EFB22252.1| hypothetical protein PANDA_019153 [Ailuropoda melanoleuca]
Length = 225
Score = 263 bits (671), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 140/238 (58%), Positives = 167/238 (70%), Gaps = 26/238 (10%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LK+SLYA+FSQFG ++DIVALKT+KMRGQAFVIFKE+ S+TNALR
Sbjct: 9 IYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQ 68
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFME-RPKKVRKQPAPVEDPAEAKKSKKKAAK 128
+QGFPFY KPMRIQY+KTDSD+ISK++GTF + KK +K+ VE A K
Sbjct: 69 LQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTATTANKKPGQGT 128
Query: 129 EQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMML 188
A Q S P P VP+ PPN ILFL NLPEET+EMML
Sbjct: 129 PNAANTQGN--------------STPNPQ-------VPDYPPNYILFLNNLPEETNEMML 167
Query: 189 SMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
SMLFNQFPGFKEVRLVP RHDIAFVEFEN+ Q+ AA+ AL GFKITP+HAMKI++AKK
Sbjct: 168 SMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>gi|149640848|ref|XP_001514376.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like isoform 1
[Ornithorhynchus anatinus]
gi|345329106|ref|XP_003431335.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like
[Ornithorhynchus anatinus]
Length = 225
Score = 263 bits (671), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 139/241 (57%), Positives = 168/241 (69%), Gaps = 32/241 (13%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LK+SLYA+FSQFG ++DIVALKT+KMRGQAFVIFKE+ S+TNALR
Sbjct: 9 IYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQ 68
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
+QGFPFY KPMRIQY+KTDSD+ISK++GTF ++ KK K+ A + A +KK
Sbjct: 69 LQGFPFYGKPMRIQYAKTDSDLISKMRGTFADKEKKKEKKKAKTVEQAANAANKK----- 123
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAG----VPEQPPNQILFLTNLPEETSE 185
P P P A VP+ PPN ILFL NLPEET+E
Sbjct: 124 -------------------PGQGAPNAANPQGNAAQNPQVPDNPPNYILFLNNLPEETNE 164
Query: 186 MMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAK 245
MMLSMLFNQFPGFKEVRLVP RHDIAFVEFEN+ Q+ AA+ AL GFKITP+HAMKI++AK
Sbjct: 165 MMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAK 224
Query: 246 K 246
K
Sbjct: 225 K 225
>gi|195476907|ref|XP_002100029.1| GE16390 [Drosophila yakuba]
gi|194187553|gb|EDX01137.1| GE16390 [Drosophila yakuba]
Length = 216
Score = 263 bits (671), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 142/220 (64%), Positives = 161/220 (73%), Gaps = 29/220 (13%)
Query: 27 SLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSK 86
SLYAIFSQFGQI+DIVALKTLKMRGQAFVIFKEI SA+NALR+MQGFPFYDKPM+I YSK
Sbjct: 26 SLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIGSASNALRTMQGFPFYDKPMQIAYSK 85
Query: 87 TDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSV 146
+DSD+++K+KGTF ERPK A+E+
Sbjct: 86 SDSDIVAKLKGTFKERPK------------KIKPPKPAPGAEEKKD------------KK 121
Query: 147 QQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPN 206
++P ++ + P EQPPNQILFLTNLPEET+EMMLSMLFNQFPGFKEVRLVPN
Sbjct: 122 KKPSSAENSNPNTQT-----EQPPNQILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPN 176
Query: 207 RHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
RHDIAFVEF E+QS AAK AL GFKITPTHAMKI+FAKK
Sbjct: 177 RHDIAFVEFTTELQSNAAKEALQGFKITPTHAMKITFAKK 216
>gi|395858003|ref|XP_003801365.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' [Otolemur
garnettii]
Length = 225
Score = 262 bits (670), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 140/237 (59%), Positives = 169/237 (71%), Gaps = 24/237 (10%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LK+SLYA+FSQFG ++DIVALKT+KMRGQAFVIFKE+ S+TNALR
Sbjct: 9 IYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQ 68
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
+QGFPFY KPMRIQY+KTDSD+ISK++GTF ++ KK K+ A + A +KK
Sbjct: 69 LQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQAATTANKKPG--- 125
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLS 189
Q S S P P VP+ PPN ILFL NLPEET+EMMLS
Sbjct: 126 ----------QGIPNSANTQGNSTPNPQ-------VPDYPPNYILFLNNLPEETNEMMLS 168
Query: 190 MLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
MLFNQFPGFKEVRLVP RHDIAFVEFEN+ Q+ AA+ AL GFKITP+HAMKI++AKK
Sbjct: 169 MLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>gi|125983292|ref|XP_001355411.1| GA18235 [Drosophila pseudoobscura pseudoobscura]
gi|195162057|ref|XP_002021872.1| GL14287 [Drosophila persimilis]
gi|54643726|gb|EAL32469.1| GA18235 [Drosophila pseudoobscura pseudoobscura]
gi|194103770|gb|EDW25813.1| GL14287 [Drosophila persimilis]
Length = 216
Score = 262 bits (670), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 146/220 (66%), Positives = 161/220 (73%), Gaps = 29/220 (13%)
Query: 27 SLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSK 86
SLYAIFSQFGQI+DIVALKTLKMRGQAFV+FKEI SA+NALR+MQGFPFYDKPMRI YSK
Sbjct: 26 SLYAIFSQFGQILDIVALKTLKMRGQAFVVFKEIGSASNALRTMQGFPFYDKPMRIAYSK 85
Query: 87 TDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSV 146
DSD+++K+KGTF ERPKKV+ + K KK E +
Sbjct: 86 CDSDIVAKLKGTFKERPKKVKPPKPTPGIDDKKDKKKKPVTTENSN-------------- 131
Query: 147 QQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPN 206
P +Q EQPPNQILFLTNLPEET+EMMLSMLFNQFPGFKEVRLVPN
Sbjct: 132 ---PNTQ------------TEQPPNQILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPN 176
Query: 207 RHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
RHDIAFVEF E+QS AAK AL GFKITPTHAMKI+FAKK
Sbjct: 177 RHDIAFVEFTTELQSNAAKEALQGFKITPTHAMKITFAKK 216
>gi|12851426|dbj|BAB29037.1| unnamed protein product [Mus musculus]
Length = 287
Score = 262 bits (669), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 150/279 (53%), Positives = 180/279 (64%), Gaps = 55/279 (19%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LKKSLYAIFSQFGQI+DI+ + +KMRGQAFVIFKE+ SATNALRS
Sbjct: 18 IYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRIMKMRGQAFVIFKEVTSATNALRS 77
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQ-PAPVEDPAEAKKSKKKAAK 128
MQGFPFYDKPMRIQY+KTDSD+I+K+KGT++ER +K K+ P E PA +KK
Sbjct: 78 MQGFPFYDKPMRIQYAKTDSDIIAKMKGTYVERDRKREKRKPKSQETPA----AKKAVQV 133
Query: 129 EQARLMQAQQQQMQAL--------------------------------SVQQPPVSQPA- 155
Q R Q + + Q PP + P
Sbjct: 134 GQLRPWWGLSQPVPGMPPMPQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQ 193
Query: 156 -------PPA-PMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR 207
PPA P++ E PPN ILFLTNLPEET+E+MLSMLFNQFPGFKEVRLVP R
Sbjct: 194 QLMPGQMPPAQPLS-----ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR 248
Query: 208 HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
HDIAFVEF+NE+Q+ AA+ AL GFKIT +AMKISFAKK
Sbjct: 249 HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 287
>gi|300796380|ref|NP_001179481.1| U2 small nuclear ribonucleoprotein B'' [Bos taurus]
gi|426240672|ref|XP_004014218.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 2 [Ovis
aries]
gi|296481542|tpg|DAA23657.1| TPA: small nuclear ribonucleoprotein polypeptide B'' [Bos taurus]
Length = 218
Score = 262 bits (669), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 137/228 (60%), Positives = 163/228 (71%), Gaps = 27/228 (11%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
I +LK+SLYA+FSQFG ++DIVALKT+KMRGQAFVIFKE+ S+TNALR +QGFPFY K
Sbjct: 18 IKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQLQGFPFYGK 77
Query: 79 PMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQ 138
PMRIQY+KTDSD+ISK++GTF D + K+ KK EQ
Sbjct: 78 PMRIQYAKTDSDIISKMRGTF--------------ADKEKKKEKKKAKTVEQT------- 116
Query: 139 QQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGF 198
A +V + P + P VP+ PPN ILFL NLPEET+EMMLSMLFNQFPGF
Sbjct: 117 ----ATTVNKKPANTQGNATP--NPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGF 170
Query: 199 KEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
KEVRLVP RHDIAFVEFEN+ Q+ AA+ AL GFKITP+HAMKI++AKK
Sbjct: 171 KEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 218
>gi|440893400|gb|ELR46188.1| U2 small nuclear ribonucleoprotein B'', partial [Bos grunniens
mutus]
Length = 233
Score = 262 bits (669), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 139/238 (58%), Positives = 167/238 (70%), Gaps = 26/238 (10%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LK+SLYA+FSQFG ++DIVALKT+KMRGQAFVIFKE+ S+TNALR
Sbjct: 17 IYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQ 76
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFME-RPKKVRKQPAPVEDPAEAKKSKKKAAK 128
+QGFPFY KPMRIQY+KTDSD+ISK++GTF + KK +K+ VE A K
Sbjct: 77 LQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTATTVNKKPGQGT 136
Query: 129 EQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMML 188
+ Q A P P VP+ PPN ILFL NLPEET+EMML
Sbjct: 137 PNSANTQGN-----------------ATPNPQ----VPDYPPNYILFLNNLPEETNEMML 175
Query: 189 SMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
SMLFNQFPGFKEVRLVP RHDIAFVEFEN+ Q+ AA+ AL GFKITP+HAMKI++AKK
Sbjct: 176 SMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 233
>gi|4507123|ref|NP_003083.1| U2 small nuclear ribonucleoprotein B'' [Homo sapiens]
gi|38149981|ref|NP_937863.1| U2 small nuclear ribonucleoprotein B'' [Homo sapiens]
gi|332238115|ref|XP_003268248.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 1
[Nomascus leucogenys]
gi|332238117|ref|XP_003268249.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 2
[Nomascus leucogenys]
gi|397478615|ref|XP_003810638.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 1 [Pan
paniscus]
gi|397478617|ref|XP_003810639.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 2 [Pan
paniscus]
gi|426391004|ref|XP_004061878.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 1
[Gorilla gorilla gorilla]
gi|426391006|ref|XP_004061879.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 2
[Gorilla gorilla gorilla]
gi|134095|sp|P08579.1|RU2B_HUMAN RecName: Full=U2 small nuclear ribonucleoprotein B''; Short=U2
snRNP B''
gi|340105|gb|AAA36796.1| U2 small nuclear ribonucleoprotein B'' [Homo sapiens]
gi|17390031|gb|AAH18022.1| Small nuclear ribonucleoprotein polypeptide B'' [Homo sapiens]
gi|22477822|gb|AAH36737.1| Small nuclear ribonucleoprotein polypeptide B'' [Homo sapiens]
gi|119630689|gb|EAX10284.1| small nuclear ribonucleoprotein polypeptide B'', isoform CRA_a
[Homo sapiens]
gi|119630690|gb|EAX10285.1| small nuclear ribonucleoprotein polypeptide B'', isoform CRA_a
[Homo sapiens]
gi|123979922|gb|ABM81790.1| small nuclear ribonucleoprotein polypeptide B'' [synthetic
construct]
gi|189066590|dbj|BAG35840.1| unnamed protein product [Homo sapiens]
gi|410226668|gb|JAA10553.1| small nuclear ribonucleoprotein polypeptide B [Pan troglodytes]
gi|410226670|gb|JAA10554.1| small nuclear ribonucleoprotein polypeptide B'' [Pan troglodytes]
gi|410263358|gb|JAA19645.1| small nuclear ribonucleoprotein polypeptide B'' [Pan troglodytes]
gi|410342435|gb|JAA40164.1| small nuclear ribonucleoprotein polypeptide B'' [Pan troglodytes]
Length = 225
Score = 262 bits (669), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 139/237 (58%), Positives = 168/237 (70%), Gaps = 24/237 (10%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LK+SLYA+FSQFG ++DIVALKT+KMRGQAFVIFKE+ S+TNALR
Sbjct: 9 IYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQ 68
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
+QGFPFY KPMRIQY+KTDSD+ISK++GTF ++ KK K+ A + +KK
Sbjct: 69 LQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTATTTNKKPG--- 125
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLS 189
Q S S P P VP+ PPN ILFL NLPEET+EMMLS
Sbjct: 126 ----------QGTPNSANTQGNSTPNPQ-------VPDYPPNYILFLNNLPEETNEMMLS 168
Query: 190 MLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
MLFNQFPGFKEVRLVP RHDIAFVEFEN+ Q+ AA+ AL GFKITP+HAMKI++AKK
Sbjct: 169 MLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>gi|403283665|ref|XP_003933231.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' [Saimiri
boliviensis boliviensis]
Length = 225
Score = 262 bits (669), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 139/237 (58%), Positives = 168/237 (70%), Gaps = 24/237 (10%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LK+SLYA+FSQFG ++DIVALKT+KMRGQAFVIFKE+ S+TNALR
Sbjct: 9 IYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQ 68
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
+QGFPFY KPMRIQY+KTDSD+ISK++GTF ++ KK K+ A + +KK
Sbjct: 69 LQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKGKKKAKTVEQTATTTNKKPG--- 125
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLS 189
Q S S P P VP+ PPN ILFL NLPEET+EMMLS
Sbjct: 126 ----------QGTPNSANTQGNSTPNPQ-------VPDYPPNYILFLNNLPEETNEMMLS 168
Query: 190 MLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
MLFNQFPGFKEVRLVP RHDIAFVEFEN+ Q+ AA+ AL GFKITP+HAMKI++AKK
Sbjct: 169 MLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>gi|348534739|ref|XP_003454859.1| PREDICTED: U1 small nuclear ribonucleoprotein A-like [Oreochromis
niloticus]
Length = 282
Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 148/280 (52%), Positives = 179/280 (63%), Gaps = 42/280 (15%)
Query: 7 HICVTNFVYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIAS 62
+ + + +Y+ + I +LKKSLYAIFSQFGQI+DI+ + +KM+GQAFVIFKEI S
Sbjct: 5 EVRLNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVARNIKMKGQAFVIFKEINS 64
Query: 63 ATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKS 122
A+NALRSMQGFPFYDKPMRIQY+KTDSD+I+K+KGT++ER +K K+ D KK
Sbjct: 65 ASNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTYVERDRKKEKKKIKGPDATGPKKG 124
Query: 123 KKKAAKEQARLMQAQQQQMQALS----------------------------VQQPPVSQP 154
A + A M +S Q PP +
Sbjct: 125 VAGAGAAMVAGVPAAMPGMPPMSQAPRMMHMPGQPPYMPPPGMMPPPGMAPGQMPPGA-- 182
Query: 155 APPAPMATAGVP--------EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPN 206
PP M +P E PPN ILFLTNLPEET+E+MLSMLFNQFPGFKEVRLVP
Sbjct: 183 IPPGQMMPGQMPGQMPQQVAENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPG 242
Query: 207 RHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
RHDIAFVEFENE+Q+ AA+ AL GFKIT T+AMKISFAKK
Sbjct: 243 RHDIAFVEFENEVQAGAARDALQGFKITQTNAMKISFAKK 282
>gi|90077244|dbj|BAE88302.1| unnamed protein product [Macaca fascicularis]
Length = 197
Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 138/237 (58%), Positives = 163/237 (68%), Gaps = 55/237 (23%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LKKSLYAIFSQFGQI+DI+ ++LKMRGQAFVIFKE++SATNALRS
Sbjct: 12 IYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRS 71
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
MQGFPFYDKPMRIQY+KTDSD+I+K+KGTF+ER + K+ K+K
Sbjct: 72 MQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDR---------------KREKRK---- 112
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLS 189
P SQ P PN ILFLTNLPEET+E+MLS
Sbjct: 113 --------------------PKSQETP------------APNHILFLTNLPEETNELMLS 140
Query: 190 MLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
MLFNQFPGFKEVRLVP RHDIAFVEF+NE+Q+ AA+ AL GFKIT +AMKISFAKK
Sbjct: 141 MLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 197
>gi|12850013|dbj|BAB28565.1| unnamed protein product [Mus musculus]
Length = 225
Score = 261 bits (668), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 141/237 (59%), Positives = 171/237 (72%), Gaps = 24/237 (10%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LK+SLYA+FSQFG ++DIVALKT+KMRGQAFVIFKE+ S+TNALR
Sbjct: 9 IYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQ 68
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
+QGFPFY KPMRIQY+KTDSD+ISK++GTF ++ KK K+ A + A A +KK
Sbjct: 69 LQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTMEQAAAAANKKPG--- 125
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLS 189
Q A + Q A P P VP+ PPN ILFL NLPEET+EMMLS
Sbjct: 126 --------QGTPNAANTQ-----GTAAPNPQ----VPDYPPNYILFLNNLPEETNEMMLS 168
Query: 190 MLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
MLFNQFPGFKEVRLVP RHDIAFVEFE + Q+ AA+ AL GFKITP+HAMKI++AKK
Sbjct: 169 MLFNQFPGFKEVRLVPGRHDIAFVEFEYDGQAGAARDALQGFKITPSHAMKITYAKK 225
>gi|116175273|ref|NP_001070696.1| uncharacterized protein LOC768116 [Sus scrofa]
gi|426240670|ref|XP_004014217.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 1 [Ovis
aries]
gi|115371759|gb|ABI96204.1| RU2B [Sus scrofa]
Length = 225
Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 139/238 (58%), Positives = 167/238 (70%), Gaps = 26/238 (10%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LK+SLYA+FSQFG ++DIVALKT+KMRGQAFVIFKE+ S+TNALR
Sbjct: 9 IYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQ 68
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFME-RPKKVRKQPAPVEDPAEAKKSKKKAAK 128
+QGFPFY KPMRIQY+KTDSD+ISK++GTF + KK +K+ VE A K
Sbjct: 69 LQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTATTVNKKPGQGT 128
Query: 129 EQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMML 188
+ Q A P P VP+ PPN ILFL NLPEET+EMML
Sbjct: 129 PNSANTQGN-----------------ATPNPQ----VPDYPPNYILFLNNLPEETNEMML 167
Query: 189 SMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
SMLFNQFPGFKEVRLVP RHDIAFVEFEN+ Q+ AA+ AL GFKITP+HAMKI++AKK
Sbjct: 168 SMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>gi|194888638|ref|XP_001976948.1| GG18748 [Drosophila erecta]
gi|190648597|gb|EDV45875.1| GG18748 [Drosophila erecta]
Length = 216
Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 142/220 (64%), Positives = 162/220 (73%), Gaps = 29/220 (13%)
Query: 27 SLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSK 86
SLYAIFSQFGQI+DIVALKTLKMRGQAFVIFKEI SA+NALR+MQGFPFYDKPM+I YSK
Sbjct: 26 SLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIGSASNALRTMQGFPFYDKPMQIAYSK 85
Query: 87 TDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSV 146
+DSD+++K+ GTF ERPKK+ A+E+
Sbjct: 86 SDSDIVAKLNGTFKERPKKI------------KPPKPAPGAEEKKD------------KK 121
Query: 147 QQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPN 206
++P ++ + P EQPPNQILFLTNLPEET+EMMLSMLFNQFPGFKEVRLVPN
Sbjct: 122 KKPSSAENSNPNTQT-----EQPPNQILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPN 176
Query: 207 RHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
RHDIAFVEF E+QS AAK AL GFKITPTHAMKI+FAKK
Sbjct: 177 RHDIAFVEFTTELQSNAAKEALQGFKITPTHAMKITFAKK 216
>gi|410917616|ref|XP_003972282.1| PREDICTED: LOW QUALITY PROTEIN: U2 small nuclear ribonucleoprotein
B''-like [Takifugu rubripes]
Length = 246
Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 135/237 (56%), Positives = 170/237 (71%), Gaps = 30/237 (12%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ +I+ +LK+SLYA+ SQFGQI+DIVA+KT+KMRGQAFVIFKE+ +ATNALR
Sbjct: 36 IYINNINDKVKKEELKRSLYALLSQFGQIVDIVAMKTMKMRGQAFVIFKELTAATNALRQ 95
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
+QGFPFY+KPMRIQY+KTDS+VI+K+KGT+ ++ KK +++ P E PA K E
Sbjct: 96 LQGFPFYNKPMRIQYAKTDSEVIAKMKGTYGDKEKKKKEKKKPQELPANQTKKAAAVVSE 155
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLS 189
R PP Q VP+ PPN ILFLTNLPEET+EMMLS
Sbjct: 156 SHR---------------SPPTGQ-----------VPDNPPNYILFLTNLPEETNEMMLS 189
Query: 190 MLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
MLFNQFPGFKEVRLVP +HDI+FVEFE+++Q+ AK AL GF+IT T AMKI++AKK
Sbjct: 190 MLFNQFPGFKEVRLVPGKHDISFVEFESDVQAGVAKDALQGFRITATCAMKITYAKK 246
>gi|386781069|ref|NP_001247823.1| U2 small nuclear ribonucleoprotein B'' [Macaca mulatta]
gi|402883260|ref|XP_003905142.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 1 [Papio
anubis]
gi|402883262|ref|XP_003905143.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 2 [Papio
anubis]
gi|402883264|ref|XP_003905144.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 3 [Papio
anubis]
gi|355563375|gb|EHH19937.1| U2 small nuclear ribonucleoprotein B'' [Macaca mulatta]
gi|380787253|gb|AFE65502.1| U2 small nuclear ribonucleoprotein B'' [Macaca mulatta]
gi|383414075|gb|AFH30251.1| U2 small nuclear ribonucleoprotein B'' [Macaca mulatta]
gi|384942630|gb|AFI34920.1| U2 small nuclear ribonucleoprotein B'' [Macaca mulatta]
Length = 225
Score = 261 bits (666), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 138/238 (57%), Positives = 167/238 (70%), Gaps = 26/238 (10%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LK+SLYA+FSQFG ++DIVALKT+KMRGQAFVIFKE+ S+TNALR
Sbjct: 9 IYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQ 68
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFME-RPKKVRKQPAPVEDPAEAKKSKKKAAK 128
+QGFPFY KPMRIQY+KTDSD+ISK++GTF + KK +K+ VE A K
Sbjct: 69 LQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKAVEQTATTTNKKPGQGT 128
Query: 129 EQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMML 188
+ Q + P P VP+ PPN ILFL NLPEET+EMML
Sbjct: 129 PNSANTQGN--------------TTPNPQ-------VPDYPPNYILFLNNLPEETNEMML 167
Query: 189 SMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
SMLFNQFPGFKEVRLVP RHDIAFVEFEN+ Q+ AA+ AL GFKITP+HAMKI++AKK
Sbjct: 168 SMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>gi|417397429|gb|JAA45748.1| Putative spliceosomal protein snrnp-u1a/u2b [Desmodus rotundus]
Length = 225
Score = 261 bits (666), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 141/239 (58%), Positives = 169/239 (70%), Gaps = 28/239 (11%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LK+SLYA+FSQFG ++DIVALKT+KMRGQAFVIFKE+ S+TNALR
Sbjct: 9 IYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQ 68
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFME-RPKKVRKQPAPVEDPA-EAKKSKKKAA 127
+QGFPFY KPMRIQY+KTDSD+ISK++GTF + KK +K+ VE A A K + A
Sbjct: 69 LQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTAITANKKPGQGA 128
Query: 128 KEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMM 187
A A P P VP+ PPN ILFL NLPEET+EMM
Sbjct: 129 PNSAN------------------TQGNATPNPQ----VPDYPPNYILFLNNLPEETNEMM 166
Query: 188 LSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
LSMLFNQFPGFKEVRLVP RHDIAFVEFEN+ Q+ AA+ AL GFKITP+HAMKI++AKK
Sbjct: 167 LSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>gi|119630691|gb|EAX10286.1| small nuclear ribonucleoprotein polypeptide B'', isoform CRA_b
[Homo sapiens]
Length = 242
Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 137/228 (60%), Positives = 162/228 (71%), Gaps = 22/228 (9%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
I +LK+SLYA+FSQFG ++DIVALKT+KMRGQAFVIFKE+ S+TNALR +QGFPFY K
Sbjct: 18 IKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQLQGFPFYGK 77
Query: 79 PMRIQYSKTDSDVISKIKGTFME-RPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQ 137
PMRIQY+KTDSD+ISK++GTF + KK +K+ VE A K + Q
Sbjct: 78 PMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTATTTNKKPGQGTPNSANTQGN 137
Query: 138 QQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPG 197
S P P VP+ PPN ILFL NLPEET+EMMLSMLFNQFPG
Sbjct: 138 --------------STPNPQ-------VPDYPPNYILFLNNLPEETNEMMLSMLFNQFPG 176
Query: 198 FKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAK 245
FKEVRLVP RHDIAFVEFEN+ Q+ AA+ AL GFKITP+HAMKI++AK
Sbjct: 177 FKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAK 224
>gi|426246411|ref|XP_004016988.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like [Ovis aries]
Length = 225
Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 138/238 (57%), Positives = 166/238 (69%), Gaps = 26/238 (10%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LK+SLYA+FSQFG ++DIVALKT+KMRGQAFVIFKE+ S+TNALR
Sbjct: 9 IYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQ 68
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFME-RPKKVRKQPAPVEDPAEAKKSKKKAAK 128
+QGFPFY KPMRIQY+KTDSD+ISK++GTF + KK +K+ VE A K
Sbjct: 69 LQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTATTVNKKPGQGT 128
Query: 129 EQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMML 188
+ Q A P P VP+ PPN ILFL NLPEET+EMML
Sbjct: 129 PNSANTQGN-----------------ATPNPQ----VPDYPPNYILFLNNLPEETNEMML 167
Query: 189 SMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
SMLFNQFPGFKEVRLVP RHDIAFVEFEN+ Q+ A + AL GFKITP+HAMKI++AKK
Sbjct: 168 SMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAGRDALQGFKITPSHAMKITYAKK 225
>gi|403263452|ref|XP_003924046.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like [Saimiri
boliviensis boliviensis]
gi|197692169|dbj|BAG70048.1| small nuclear ribonucleoprotein polypeptide B'' [Homo sapiens]
gi|197692419|dbj|BAG70173.1| small nuclear ribonucleoprotein polypeptide B'' [Homo sapiens]
Length = 225
Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 138/237 (58%), Positives = 167/237 (70%), Gaps = 24/237 (10%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LK+SLYA+FSQFG ++DIVALKT+KMRGQAF IFKE+ S+TNALR
Sbjct: 9 IYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFAIFKELGSSTNALRQ 68
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
+QGFPFY KPMRIQY+KTDSD+ISK++GTF ++ KK K+ A + +KK
Sbjct: 69 LQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTATTTNKKPG--- 125
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLS 189
Q S S P P VP+ PPN ILFL NLPEET+EMMLS
Sbjct: 126 ----------QGTPNSANTQGNSTPNPQ-------VPDYPPNYILFLNNLPEETNEMMLS 168
Query: 190 MLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
MLFNQFPGFKEVRLVP RHDIAFVEFEN+ Q+ AA+ AL GFKITP+HAMKI++AKK
Sbjct: 169 MLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>gi|390333482|ref|XP_789234.3| PREDICTED: U1 small nuclear ribonucleoprotein A-like
[Strongylocentrotus purpuratus]
Length = 235
Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 140/243 (57%), Positives = 171/243 (70%), Gaps = 32/243 (13%)
Query: 24 LKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83
LKKSLYAIFSQFGQI+DIVALKTLKMRGQAFVIF++I SAT+ALRSMQGFPFYDKPMRI
Sbjct: 5 LKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFRDITSATSALRSMQGFPFYDKPMRIG 64
Query: 84 YSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE-------------- 129
Y KT SD I+K++GT++ R K+V K+ VE+P + +K+++ +
Sbjct: 65 YCKTKSDAIAKMQGTYVPREKRVEKK--KVEEPVKGRKNRQNRHADVVIPPPSQIPMPGA 122
Query: 130 ------QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEET 183
L+ QM QPP+ P PAP+ VP++ PN ILFLTNLPEET
Sbjct: 123 PPAANQPPPLLGEMPMQM-----GQPPIQVPTAPAPV----VPDE-PNNILFLTNLPEET 172
Query: 184 SEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISF 243
+E+ML +LF QF G+KEVRLVP RHDIAFVEF NE QS AK AL GFKITPT+ +KI++
Sbjct: 173 NELMLEVLFKQFNGYKEVRLVPGRHDIAFVEFANEQQSGTAKDALQGFKITPTNTLKIAY 232
Query: 244 AKK 246
AKK
Sbjct: 233 AKK 235
>gi|348538124|ref|XP_003456542.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like [Oreochromis
niloticus]
Length = 218
Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 134/237 (56%), Positives = 171/237 (72%), Gaps = 31/237 (13%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ +I+ +LK+SLYA+FSQFGQ++DIVA+KT+KMRGQAFVIFKE+A+ATNALR
Sbjct: 9 IYINNINDKIKKEELKRSLYALFSQFGQVIDIVAMKTMKMRGQAFVIFKELAAATNALRQ 68
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
+QGFPFY+KPMRIQY+KTDS+VI+K+KG++ ++ KK +++ E A A K
Sbjct: 69 LQGFPFYNKPMRIQYAKTDSEVIAKVKGSYGDKEKKKKEKKKAQELAANATKK------- 121
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLS 189
P + APPA VP+ PPN ILFL+NLPEET+EMMLS
Sbjct: 122 --------------------PAAGLAPPALTPAVQVPDNPPNYILFLSNLPEETNEMMLS 161
Query: 190 MLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
MLFNQFPGFKEVRLVP +HDIAFVEFE++ Q+ AK AL GF+IT T AMKI++AKK
Sbjct: 162 MLFNQFPGFKEVRLVPGKHDIAFVEFESDTQAGVAKDALQGFRITATCAMKITYAKK 218
>gi|432953888|ref|XP_004085464.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like isoform 2
[Oryzias latipes]
Length = 218
Score = 260 bits (664), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 133/237 (56%), Positives = 174/237 (73%), Gaps = 31/237 (13%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ +I+ +LK+SLYA+FSQFGQI+ +VALKT++MRGQAFV+FKE+A+ATNALR
Sbjct: 9 IYINNINDKVKKEELKRSLYALFSQFGQILSVVALKTMRMRGQAFVVFKELAAATNALRQ 68
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
+QGFPFY+KPMRIQY+KTDS+VI+K+KGTF + KE
Sbjct: 69 LQGFPFYNKPMRIQYAKTDSEVIAKMKGTFGD--------------------------KE 102
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLS 189
+ + + + Q++ A + ++P V + A P P+ + VP+ PPN ILFL NLPEET+EMMLS
Sbjct: 103 KKKEKKKKAQELAANAAKKPAVRRGAVPPPLYRS-VPDNPPNHILFLNNLPEETNEMMLS 161
Query: 190 MLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
MLFNQFPGFKEVRLVP +HDIAFVEFE++ Q+ AK AL GF+IT T AMKI+FAKK
Sbjct: 162 MLFNQFPGFKEVRLVPGKHDIAFVEFESDTQAGVAKDALQGFRITATCAMKITFAKK 218
>gi|318065773|ref|NP_001187499.1| u2 small nuclear ribonucleoprotein b'' [Ictalurus punctatus]
gi|308322301|gb|ADO28288.1| u2 small nuclear ribonucleoprotein b'' [Ictalurus furcatus]
gi|308323171|gb|ADO28722.1| u2 small nuclear ribonucleoprotein b'' [Ictalurus punctatus]
Length = 219
Score = 259 bits (662), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 136/237 (57%), Positives = 176/237 (74%), Gaps = 30/237 (12%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ +++ +LK+SLYA+FSQFGQI++IVA+KT+KMRGQAFV+FKE+A+ATNALR
Sbjct: 9 IYINNLNDRVKKEELKRSLYALFSQFGQIVEIVAMKTMKMRGQAFVVFKELAAATNALRQ 68
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
+QGFPFY+KPMRIQY+KTDSD++SK++GT+ + +K K+K K
Sbjct: 69 LQGFPFYNKPMRIQYAKTDSDIVSKMRGTY-----------------GDKEKKKEKKKKA 111
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLS 189
Q + A ++ + A++ +QP PPA T VP+ PPN ILFLTNLPEET+EMMLS
Sbjct: 112 QEQAANAAKKPVNAVN------NQPPPPA---TVQVPDNPPNYILFLTNLPEETNEMMLS 162
Query: 190 MLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
MLFNQFPGFKEVRLVP +HDIAFVEFE E Q+ AK AL GF+IT T AMKI++AKK
Sbjct: 163 MLFNQFPGFKEVRLVPGKHDIAFVEFEGEAQAGVAKDALQGFRITATCAMKITYAKK 219
>gi|41054443|ref|NP_955965.1| U1 small nuclear ribonucleoprotein A [Danio rerio]
gi|39850066|gb|AAH64308.1| Small nuclear ribonucleoprotein polypeptide A [Danio rerio]
Length = 281
Score = 259 bits (661), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 147/272 (54%), Positives = 175/272 (64%), Gaps = 41/272 (15%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LKKSLYAIFSQFGQI+DI+ +TLKM+GQAFVIFKEI SA+NALRS
Sbjct: 12 IYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRTLKMKGQAFVIFKEINSASNALRS 71
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQ------------------PA 111
MQGFPFYDKPMRIQYSK DSD+I+K+KGTF+ER +K K+ PA
Sbjct: 72 MQGFPFYDKPMRIQYSKQDSDIIAKMKGTFVERDRKKEKKKPKVPEAGAGKKGGSGATPA 131
Query: 112 PVEDPA---------EAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMAT 162
PA +A + + Q PP + PP M
Sbjct: 132 MAGVPAAIPGMPPMSQAPRMMPMPGQPPYMPPPGMMPPPNMAPGQMPPGAM--PPGGMMP 189
Query: 163 AGVP--------EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVE 214
+P E PPN ILFLTNLPEET+E+MLSMLFNQFPGFKEVRLVP RHDIAFVE
Sbjct: 190 GQMPGQMPQQVSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVE 249
Query: 215 FENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
F+NE+Q+ AA+ AL GFKIT ++AMKISFAKK
Sbjct: 250 FDNEVQAGAAREALQGFKITQSNAMKISFAKK 281
>gi|47211375|emb|CAF89828.1| unnamed protein product [Tetraodon nigroviridis]
Length = 218
Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 137/237 (57%), Positives = 172/237 (72%), Gaps = 31/237 (13%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ +I+ +LK+SLYA+ SQFGQI+DIVA+KT+KMRGQAFVIFKE+ +ATNALR
Sbjct: 9 IYINNINDKVKKEELKRSLYALLSQFGQIVDIVAMKTMKMRGQAFVIFKELTAATNALRQ 68
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
+QGFPFY+KPMRIQY+KTDS+VI+K+KGT+ ++ KK +++ E PA
Sbjct: 69 LQGFPFYNKPMRIQYAKTDSEVIAKMKGTYGDKEKKKKEKKKAQELPA------------ 116
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLS 189
Q +A V P+ PA A VP+ PPN ILFLTNLPEET+EMMLS
Sbjct: 117 --------NQMKKAAVVPAVPLHSPA-------AQVPDNPPNYILFLTNLPEETNEMMLS 161
Query: 190 MLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
MLFNQFPGFKEVRLVP +HDIAFVEFE+++Q+ AK AL GF+IT T AMKI+FAKK
Sbjct: 162 MLFNQFPGFKEVRLVPGKHDIAFVEFESDLQAGVAKDALQGFRITATCAMKITFAKK 218
>gi|355784710|gb|EHH65561.1| U2 small nuclear ribonucleoprotein B'' [Macaca fascicularis]
Length = 225
Score = 258 bits (659), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 137/238 (57%), Positives = 166/238 (69%), Gaps = 26/238 (10%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LK+SLYA+FSQFG ++DIVALKT+KMRGQAFVIFKE+ S+TNALR
Sbjct: 9 IYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQ 68
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFME-RPKKVRKQPAPVEDPAEAKKSKKKAAK 128
+QGFPFY KPMRIQY+KTDSD+ISK++GTF + KK +K+ VE A K
Sbjct: 69 LQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKAVEQTATTTNKKPGQGT 128
Query: 129 EQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMML 188
+ Q + P P VP+ PPN ILFL NLPEET+EMML
Sbjct: 129 PNSANTQGN--------------TTPNPQ-------VPDYPPNYILFLNNLPEETNEMML 167
Query: 189 SMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
SMLFNQFPGFKEVRLVP RHDIAFVEFEN+ Q+ AA+ AL GFKIT +HAMKI++AKK
Sbjct: 168 SMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITTSHAMKITYAKK 225
>gi|126303676|ref|XP_001374230.1| PREDICTED: u2 small nuclear ribonucleoprotein B''-like isoform 1
[Monodelphis domestica]
Length = 225
Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 138/238 (57%), Positives = 167/238 (70%), Gaps = 26/238 (10%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LK+SLYA+FSQFG ++DIVALKT+KMRGQAFVIFKE+ S+TNALR
Sbjct: 9 IYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQ 68
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFME-RPKKVRKQPAPVEDPAEAKKSKKKAAK 128
+QGFPFY KPMRIQY+KTDSDVISK++GTF + KK +K+ +E A A K A
Sbjct: 69 LQGFPFYGKPMRIQYAKTDSDVISKMRGTFADKEKKKEKKKAKSLEQTANAANKKPGQAT 128
Query: 129 EQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMML 188
+ Q S Q P VP+ PPN ILFL NLPEET+EMML
Sbjct: 129 PNS-------ANTQGNSTQNPQ--------------VPDYPPNYILFLNNLPEETNEMML 167
Query: 189 SMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
SMLFNQ+P FKEVRL P RHDIAFVEFEN+ Q+ AA+ AL GFKITP+HAMKI++AKK
Sbjct: 168 SMLFNQYPVFKEVRLGPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>gi|58331942|ref|NP_001011120.1| small nuclear ribonucleoprotein polypeptide B [Xenopus (Silurana)
tropicalis]
gi|54038268|gb|AAH84519.1| hypothetical LOC496533 [Xenopus (Silurana) tropicalis]
gi|89268683|emb|CAJ82680.1| small nuclear ribonucleoprotein polypeptide B [Xenopus (Silurana)
tropicalis]
Length = 223
Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 139/237 (58%), Positives = 171/237 (72%), Gaps = 26/237 (10%)
Query: 14 VYVTHISST----DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
VY+ ++ +LK+SLYA+FSQFG ++DIVALKT+KMRGQAFVIFKE++SATNALR
Sbjct: 9 VYINNLCDKVKKPELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELSSATNALRQ 68
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
+QGFPFY+KPMRIQY+K+DSDVI K+KGTF D + K+ KK A+E
Sbjct: 69 LQGFPFYNKPMRIQYAKSDSDVILKMKGTF--------------ADKEKKKEKKKAKAQE 114
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLS 189
QA ++ + + + P SQ VP+ PPN ILFL NLPEET+EMMLS
Sbjct: 115 QAANAANKKPALASNANNAPGASQ--------NQQVPDNPPNYILFLNNLPEETNEMMLS 166
Query: 190 MLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
MLFNQFPGFKEVRLVP RHDIAFVEFENE ++ AA+ AL GFKITP+HAMKI++A K
Sbjct: 167 MLFNQFPGFKEVRLVPGRHDIAFVEFENETEAGAARDALQGFKITPSHAMKITYANK 223
>gi|295314954|gb|ADF97627.1| small nuclear ribonucleoprotein polypeptide A [Hypophthalmichthys
molitrix]
Length = 281
Score = 256 bits (654), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 146/272 (53%), Positives = 174/272 (63%), Gaps = 41/272 (15%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LKKSLYAIFSQFGQI+DI+ TLKMRGQAFVIFKEI SA+NALRS
Sbjct: 12 IYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSPTLKMRGQAFVIFKEINSASNALRS 71
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQ------------------PA 111
MQGFPFYDKPMRIQY+K DSD+I+K+KGT++ER +K K+ PA
Sbjct: 72 MQGFPFYDKPMRIQYAKQDSDIIAKMKGTYVERDRKKEKKKPKAPEPGAGKKGGAAATPA 131
Query: 112 PVEDPA---------EAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMAT 162
PA +A + + Q PP + PP M
Sbjct: 132 MAGVPAAMPGMPPMSQAPRMMPMPGQPPYMPPPGMMPPPGMAPGQMPPGAM--PPGQMMP 189
Query: 163 AGVP--------EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVE 214
+P E PPN ILFLTNLPEET+E+MLSMLFNQFPGFKEVRLVP RHDIAFVE
Sbjct: 190 GQMPGQMPQQVSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVE 249
Query: 215 FENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
F+NE+Q+ AA+ AL GFKIT ++AMKISFAKK
Sbjct: 250 FDNEVQAGAAREALQGFKITQSNAMKISFAKK 281
>gi|37748043|gb|AAH59527.1| Snrpb2 protein [Danio rerio]
Length = 229
Score = 256 bits (654), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 136/250 (54%), Positives = 177/250 (70%), Gaps = 29/250 (11%)
Query: 1 MNIILAHICVTNFVYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVI 56
+++++ I + +Y+ +++ +LK+SLYA+FSQFGQIMDIVALKT++MRGQAFVI
Sbjct: 5 LSLLIMDIRPNHTIYINNVNDKIKKEELKRSLYALFSQFGQIMDIVALKTMRMRGQAFVI 64
Query: 57 FKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDP 116
FKE+++ATNALR +QGFPFY+KPMRIQY+KTDSD++SK++GT+ ++ KK K+ E
Sbjct: 65 FKELSAATNALRQLQGFPFYNKPMRIQYAKTDSDLVSKMRGTYGDKEKKKEKKKKAQEQA 124
Query: 117 AEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFL 176
A K A +QP PP AT +P+ PPN ILFL
Sbjct: 125 AANANKKPAGAVN----------------------TQPPPP---ATVQIPDNPPNYILFL 159
Query: 177 TNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPT 236
NLPEET+EMMLSMLFNQFPGFKEVRLVP +HDI+FVEFE+E Q+ AK AL GF+IT T
Sbjct: 160 NNLPEETNEMMLSMLFNQFPGFKEVRLVPGKHDISFVEFESEAQAGVAKDALQGFRITAT 219
Query: 237 HAMKISFAKK 246
AMKI++AKK
Sbjct: 220 CAMKITYAKK 229
>gi|351712152|gb|EHB15071.1| U1 small nuclear ribonucleoprotein A [Heterocephalus glaber]
Length = 272
Score = 256 bits (653), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 140/237 (59%), Positives = 169/237 (71%), Gaps = 21/237 (8%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
I +LKKSLYAIFSQFG I+DI+ ++LKMRGQA VIFKE++SATNALRSMQGFPFYDK
Sbjct: 21 IKEDELKKSLYAIFSQFGHILDILVSRSLKMRGQALVIFKEVSSATNALRSMQGFPFYDK 80
Query: 79 PMRIQYSKTDSDVISKIKGTFMERPKKVRKQ-PAPVEDPAEAKKSKKKAAKEQA------ 131
PMRIQY+K +SD+I+K+KGTF+ER +K K+ P E P+ K + AA A
Sbjct: 81 PMRIQYAKANSDIIAKLKGTFVERDRKREKRKPKSQEAPSAKKAVQGGAAAPVAASWHDP 140
Query: 132 --RLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLS 189
L Q Q + Q PP +QP + E PPN ILFLTNLPEET+E+MLS
Sbjct: 141 PPGLAPGQMPPQQIMPGQMPP-AQP----------LSENPPNHILFLTNLPEETNELMLS 189
Query: 190 MLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
M FNQFPGF+E RLVP RHDIAFVEF+ E+Q+ AA+ AL G+KIT +AMKISFAKK
Sbjct: 190 MPFNQFPGFQEARLVPGRHDIAFVEFD-EVQAGAAREALQGYKITQNNAMKISFAKK 245
>gi|431894149|gb|ELK03949.1| U2 small nuclear ribonucleoprotein B'' [Pteropus alecto]
Length = 291
Score = 256 bits (653), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 138/237 (58%), Positives = 166/237 (70%), Gaps = 24/237 (10%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LK+SLYA+FSQFG ++DIVALKT+KMRGQAFVIFKE+ S+TNALR
Sbjct: 71 IYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQ 130
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
+QGFPFY KPMRIQY+KTDSD+ISK++GTF D + K+ KK E
Sbjct: 131 LQGFPFYGKPMRIQYAKTDSDIISKMRGTF--------------ADKEKKKEKKKAKTVE 176
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLS 189
Q M A ++ Q + P P VP+ PPN ILFL NLPEET+EMMLS
Sbjct: 177 QT-AMTANKKPGQG-TPNSANTQGNVTPNPQ----VPDYPPNYILFLNNLPEETNEMMLS 230
Query: 190 MLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
MLFNQFPGFKEVRLVP RHDIAFVEFEN+ Q+ AA+ AL GFKIT HAMKI++AKK
Sbjct: 231 MLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITLYHAMKITYAKK 287
>gi|371874989|ref|NP_001243119.1| U2 small nuclear ribonucleoprotein B'' [Danio rerio]
Length = 220
Score = 255 bits (652), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 135/237 (56%), Positives = 170/237 (71%), Gaps = 29/237 (12%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ +++ +LK+SLYA+FSQFGQIMDIVALKT++MRGQAFVIFKE+++ATNALR
Sbjct: 9 IYINNVNDKIKKEELKRSLYALFSQFGQIMDIVALKTMRMRGQAFVIFKELSAATNALRQ 68
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
+QGFPFY+KPMRIQY+KTDSD++SK++GT+ ++ KK K+ E A K A
Sbjct: 69 LQGFPFYNKPMRIQYAKTDSDLVSKMRGTYGDKEKKKEKKKKAQEQAAANANKKPAGAVN 128
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLS 189
+QP PP AT +P+ PPN ILFL NLPEET+EMMLS
Sbjct: 129 ----------------------TQPPPP---ATVQIPDNPPNYILFLNNLPEETNEMMLS 163
Query: 190 MLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
MLFNQFPGFKEVRLVP +HDI+FVEFE+E Q+ AK AL GF+IT T AMKI++AKK
Sbjct: 164 MLFNQFPGFKEVRLVPGKHDISFVEFESEAQAGVAKDALQGFRITATCAMKITYAKK 220
>gi|225707030|gb|ACO09361.1| U2 small nuclear ribonucleoprotein B [Osmerus mordax]
Length = 219
Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 133/237 (56%), Positives = 171/237 (72%), Gaps = 30/237 (12%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ +++ +LK+SLYA+FSQFGQI+DIVA+KT+KMRGQAFV+FKE+A++TNALR
Sbjct: 9 IYINNVNDKIKKDELKRSLYALFSQFGQIVDIVAMKTIKMRGQAFVVFKELAASTNALRQ 68
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
+QGFPFY+KPMRIQY+KTDS+VISK++GT+ + E KK KKK A+E
Sbjct: 69 LQGFPFYNKPMRIQYAKTDSEVISKMRGTYSD---------------KEKKKEKKKKAQE 113
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLS 189
Q A ++P + P T VP+ PPN ILFL NLPEET+EMMLS
Sbjct: 114 QV-----------ANVTKKPALGSNTQPNTQVTTQVPDNPPNYILFLNNLPEETNEMMLS 162
Query: 190 MLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
MLFNQFPGFKEVRLVP +HDI+FVEFE+E ++ AK AL GF+IT T AMKI+++KK
Sbjct: 163 MLFNQFPGFKEVRLVPGKHDISFVEFESEARAGVAKDALQGFRITATCAMKITYSKK 219
>gi|449513226|ref|XP_002193869.2| PREDICTED: U2 small nuclear ribonucleoprotein B''-like [Taeniopygia
guttata]
Length = 322
Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 133/224 (59%), Positives = 165/224 (73%), Gaps = 20/224 (8%)
Query: 23 DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRI 82
+LK+SLYA+FSQFG ++DIVALKT+KMRGQAFVIFKE+ S+TNALR +QGFPFY KPM I
Sbjct: 119 ELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQLQGFPFYGKPMHI 178
Query: 83 QYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQ 142
QY+KTDSD+IS+++GTF ++ K+ K+ A + + +KK ++Q Q
Sbjct: 179 QYAKTDSDIISEMRGTFADKEKRKEKKKAKTLEQSANAPNKK--------VIQGATQN-S 229
Query: 143 ALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVR 202
A + P +Q VP+ PPN ILFL NLPEET+EMMLSMLFNQFPGFKEVR
Sbjct: 230 ASAPGTTPQNQ-----------VPDNPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVR 278
Query: 203 LVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
LVP RHDIAFVEFENE Q+ AA+ AL GFKI +HAMKI++AKK
Sbjct: 279 LVPGRHDIAFVEFENENQAGAARDALQGFKIPLSHAMKITYAKK 322
>gi|449512588|ref|XP_004176179.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' [Taeniopygia
guttata]
Length = 221
Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 131/225 (58%), Positives = 164/225 (72%), Gaps = 20/225 (8%)
Query: 22 TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMR 81
++LK+SLY +FSQFG ++DIVALKT+KMRGQAFVIFKE+ S+TNALR +QGFPFY KPM
Sbjct: 17 SELKRSLYVLFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQLQGFPFYGKPMH 76
Query: 82 IQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQM 141
IQY+KTDSD+IS+++GTF ++ K+ K+ A + + +KK ++Q Q
Sbjct: 77 IQYAKTDSDIISEMRGTFADKEKRKEKKKAKTLEQSANAPNKK--------VIQGATQ-- 126
Query: 142 QALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEV 201
+ + P VP+ PPN ILFL NLPEET+EMMLSMLFNQFPGFKEV
Sbjct: 127 ----------NSASAPGTTPQNQVPDNPPNCILFLNNLPEETNEMMLSMLFNQFPGFKEV 176
Query: 202 RLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
RLVP RHDIAFVEFENE Q+ AA+ AL GFKI P+HAMKI++AKK
Sbjct: 177 RLVPGRHDIAFVEFENENQAGAARDALQGFKIPPSHAMKITYAKK 221
>gi|432890232|ref|XP_004075429.1| PREDICTED: U1 small nuclear ribonucleoprotein A-like isoform 1
[Oryzias latipes]
gi|432890234|ref|XP_004075430.1| PREDICTED: U1 small nuclear ribonucleoprotein A-like isoform 2
[Oryzias latipes]
Length = 272
Score = 253 bits (646), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 146/261 (55%), Positives = 173/261 (66%), Gaps = 28/261 (10%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LKKSLYAIFSQFGQI+DI+ +TLKM+GQAFVIFKEI SA+NALRS
Sbjct: 12 IYINNLNEKIKKDELKKSLYAIFSQFGQILDILVARTLKMKGQAFVIFKEINSASNALRS 71
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
MQGFPFYDKPMRIQYSKTDSD+I+K+KGT++ER +K K+ E K +
Sbjct: 72 MQGFPFYDKPMRIQYSKTDSDIIAKMKGTYVERERKKEKRKPKPEGTGAKKAAAAAMMAG 131
Query: 130 QARLMQAQQQQMQALSVQQPP-----------------VSQPAPPAPMAT---AGVPEQ- 168
M QA + P PP M +P+Q
Sbjct: 132 VPTAMPGMPPMSQAPRMMHIPGQPAYMPPPGMMPPPGMAPGQIPPGAMGQMMPGQMPQQV 191
Query: 169 ---PPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAK 225
PPN ILFLTNLPEET+E+MLSMLFNQFPGFKEVRLVP RHDIAFVEF+NE+Q+ AA+
Sbjct: 192 AENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAAR 251
Query: 226 LALHGFKITPTHAMKISFAKK 246
+L GFKIT THAMKISFAKK
Sbjct: 252 DSLQGFKITQTHAMKISFAKK 272
>gi|223649102|gb|ACN11309.1| U2 small nuclear ribonucleoprotein B [Salmo salar]
Length = 219
Score = 253 bits (645), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 132/239 (55%), Positives = 167/239 (69%), Gaps = 34/239 (14%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ +++ +LK+SLYA+FSQFGQ+MDIVA+KT+KMRGQAFV+FKE+AS+TNALR
Sbjct: 9 IYINNVNDKIKKDELKRSLYALFSQFGQVMDIVAMKTMKMRGQAFVVFKELASSTNALRQ 68
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
+QGFPFY+KPMRIQY+KTDS+VISKI+GTF +
Sbjct: 69 LQGFPFYNKPMRIQYAKTDSEVISKIRGTF---------------------------GDK 101
Query: 130 QARLMQAQQQQMQALSVQQPPV--SQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMM 187
+ + ++ Q Q +V + P S AP T VP+ PPN ILFL NLPEET+EMM
Sbjct: 102 DKKKDRKKKAQDQVANVAKKPALGSANTNNAP-TTMQVPDNPPNYILFLNNLPEETNEMM 160
Query: 188 LSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
LSMLFNQFPGFKEVRLVP +HDI+FVEFE+E Q+ AK AL GF+IT AMKI++AKK
Sbjct: 161 LSMLFNQFPGFKEVRLVPGKHDISFVEFESEGQAGVAKDALQGFRITAQCAMKITYAKK 219
>gi|226443332|ref|NP_001139849.1| U2 small nuclear ribonucleoprotein B [Salmo salar]
gi|221219334|gb|ACM08328.1| U2 small nuclear ribonucleoprotein B [Salmo salar]
Length = 219
Score = 253 bits (645), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 129/237 (54%), Positives = 165/237 (69%), Gaps = 30/237 (12%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ +++ +LK+SLYA+FSQFGQ+MDIVA+KT+KMRGQAFV+FKE+ASATNALR
Sbjct: 9 IYINNVNDKIKKDELKRSLYALFSQFGQVMDIVAMKTMKMRGQAFVVFKELASATNALRQ 68
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
+QGFPFY+ PMRIQY+KTDS+VISKI+GTF K+
Sbjct: 69 LQGFPFYNNPMRIQYAKTDSEVISKIRGTF--------------------------GDKD 102
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLS 189
+ + + + Q A ++P + + T VP+ PPN ILFL NLPEET+EMMLS
Sbjct: 103 KKKDRKKKAQDQVANVAKKPALGSASTNNAPTTMQVPDNPPNYILFLNNLPEETNEMMLS 162
Query: 190 MLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
MLFNQFPGFKEVRLVP +HDI+FVEFE+E Q+ AK AL GF+IT AMKI++AKK
Sbjct: 163 MLFNQFPGFKEVRLVPGKHDISFVEFESEGQAGVAKDALQGFRITAQCAMKITYAKK 219
>gi|339255862|ref|XP_003370674.1| putative RNA recognition motif protein [Trichinella spiralis]
gi|316965776|gb|EFV50450.1| putative RNA recognition motif protein [Trichinella spiralis]
Length = 220
Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 128/233 (54%), Positives = 165/233 (70%), Gaps = 28/233 (12%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+YV + I +LK++L+A+F QFG I+DIV LKTLKMRGQAF++FK++ SATNALRS
Sbjct: 10 IYVNNLNEKIKKDELKRALHAVFHQFGTILDIVCLKTLKMRGQAFIVFKDLNSATNALRS 69
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKA-AK 128
MQGFPFYDKPMRIQY+K++SD ++K+KGT++ERPK+ ++ + E+KK KK+ A
Sbjct: 70 MQGFPFYDKPMRIQYAKSESDAVAKLKGTYVERPKEHQRN---ADLTGESKKEKKRRIAA 126
Query: 129 EQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMML 188
E+ARL ++ +SV+ P PPN+ILF TNLPEE +E ML
Sbjct: 127 EKARLRASEGTNY--VSVESNP------------------PPNKILFCTNLPEEATEHML 166
Query: 189 SMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKI 241
MLFNQFPGFKEVRLVPNRHDIAFVEF+NE QS A+ L FK+TP H +K
Sbjct: 167 QMLFNQFPGFKEVRLVPNRHDIAFVEFDNEYQSKTARDTLQNFKVTPNHPIKF 219
>gi|147902061|ref|NP_001088194.1| small nuclear ribonucleoprotein polypeptide B [Xenopus laevis]
gi|54035240|gb|AAH84107.1| LOC495019 protein [Xenopus laevis]
Length = 223
Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 137/237 (57%), Positives = 169/237 (71%), Gaps = 26/237 (10%)
Query: 14 VYVTHISST----DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
VY+ ++ +LK+SLYA+FSQFG ++DIVALKT+KMRGQ FVIFKE++SATNALR
Sbjct: 9 VYINNLCDKVKKPELKRSLYALFSQFGHVVDIVALKTMKMRGQGFVIFKELSSATNALRQ 68
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
+QGFPFY KPMRIQY+KTDSDV+ K+KGTF D + K+ KK A+E
Sbjct: 69 LQGFPFYSKPMRIQYAKTDSDVVLKMKGTF--------------ADKEKKKEKKKAKAQE 114
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLS 189
QA ++ + + P SQ VP+ PPN ILFL NLPEET+EMMLS
Sbjct: 115 QAANAANKKPALAPNANNVPSASQ--------NPQVPDNPPNYILFLNNLPEETNEMMLS 166
Query: 190 MLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
MLFNQFPGFKEVRLVP RHDIAFVEF+NE ++ +A+ AL GFKITP++AMKI+FAKK
Sbjct: 167 MLFNQFPGFKEVRLVPGRHDIAFVEFDNETEAGSARDALQGFKITPSNAMKITFAKK 223
>gi|349605397|gb|AEQ00652.1| U2 small nuclear ribonucleoprotein B''-like protein, partial [Equus
caballus]
Length = 197
Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 133/217 (61%), Positives = 157/217 (72%), Gaps = 20/217 (9%)
Query: 30 AIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTDS 89
A+FSQFG ++DIVALKT+KMRGQAFVIFKE+ S+TNALR +QGFPFY KPMRIQY+KTDS
Sbjct: 1 ALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQLQGFPFYGKPMRIQYAKTDS 60
Query: 90 DVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQP 149
D+ISK++GTF ++ KK K+ A + +KK Q SV
Sbjct: 61 DIISKMRGTFADKEKKKEKKKAKTVEQTATTANKKPG-------------QGTPNSVNTQ 107
Query: 150 PVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHD 209
S P P VP+ PPN ILFL NLPEET+EMMLSMLFNQFPGFKEVRLVP RHD
Sbjct: 108 GNSTPNPQ-------VPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHD 160
Query: 210 IAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
IAFVEFEN+ Q+ AA+ AL GFKITP+HAMKI++AKK
Sbjct: 161 IAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 197
>gi|147902216|ref|NP_001085460.1| MGC80122 protein [Xenopus laevis]
gi|49257361|gb|AAH72799.1| MGC80122 protein [Xenopus laevis]
Length = 223
Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 138/237 (58%), Positives = 169/237 (71%), Gaps = 26/237 (10%)
Query: 14 VYVTHISST----DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
VY+ ++ +LK+SLYA+FSQFG ++DIVALKT+KMRGQAFVIFKE++SATNALR
Sbjct: 9 VYINNLCDKVKKPELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELSSATNALRQ 68
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
+QGFPFY KPMRIQY+K+DSDV+ K+KGTF ++ KK K+ A ++ A +KK A
Sbjct: 69 LQGFPFYSKPMRIQYAKSDSDVVLKMKGTFADKEKKKEKKKAKAQEQAANAANKKSAPAS 128
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLS 189
A A Q Q V + PPN ILFL NLPEET+EMMLS
Sbjct: 129 NANNAPAASQNTQ----------------------VQDNPPNYILFLNNLPEETNEMMLS 166
Query: 190 MLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
MLFNQFPGFKEVRLVP RHDIAFVEFENE ++ +A+ AL GFKITP+HAMKI++AKK
Sbjct: 167 MLFNQFPGFKEVRLVPGRHDIAFVEFENETEAGSARDALQGFKITPSHAMKITYAKK 223
>gi|309266585|ref|XP_003086803.1| PREDICTED: U1 small nuclear ribonucleoprotein A-like [Mus musculus]
Length = 282
Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 141/262 (53%), Positives = 172/262 (65%), Gaps = 34/262 (12%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
I +LKKS YAIFSQFGQI+DI+ ++LKMRGQ+FVIFKE++S NALRSMQGFPFY K
Sbjct: 21 IKKDELKKSPYAIFSQFGQILDILVSQSLKMRGQSFVIFKEVSSTINALRSMQGFPFYGK 80
Query: 79 PMRIQYSKTDSDVISKIKGTFMERP-KKVRKQPAPVEDPAEAKKSKKKAA---------- 127
PM IQY+KTDSD+I+K+KGTF+ER K+ +++P E PA K + AA
Sbjct: 81 PMHIQYAKTDSDIIAKMKGTFVERDHKREKRKPKSQEKPAAKKAVQGGAAAPVVGAVQPP 140
Query: 128 -------KEQARLMQ---AQQQQMQALSVQQPPVSQPA-------PPAPMATAGVP---- 166
+ R+M Q M+ + PP P PP + +P
Sbjct: 141 VPGMPPMPQAPRVMHHMPGQPPYMRPPGMILPPGLPPGQIPSRAMPPQQLIPGQMPHAQP 200
Query: 167 --EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAA 224
E PPN ILFLTNLPEET+E+MLSMLF QFPGFKEVRLVP RHDI FVEF+NE+Q+ AA
Sbjct: 201 LSENPPNHILFLTNLPEETNELMLSMLFTQFPGFKEVRLVPGRHDIDFVEFDNEVQAGAA 260
Query: 225 KLALHGFKITPTHAMKISFAKK 246
+ L GFKIT +AMKISFAKK
Sbjct: 261 RDVLQGFKITQNNAMKISFAKK 282
>gi|148689095|gb|EDL21042.1| mCG15722 [Mus musculus]
Length = 281
Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 138/261 (52%), Positives = 172/261 (65%), Gaps = 33/261 (12%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
I +LKKS YAIFSQFGQI+DI+ ++LKMRGQ+FVIFKE++S NALRSMQGFPFY K
Sbjct: 21 IKKDELKKSPYAIFSQFGQILDILVSQSLKMRGQSFVIFKEVSSTINALRSMQGFPFYGK 80
Query: 79 PMRIQYSKTDSDVISKIKGTFMERP-KKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQ-- 135
PM IQY+KTDSD+I+K+KGTF+ER K+ +++P E PA K+ + + +Q
Sbjct: 81 PMHIQYAKTDSDIIAKMKGTFVERDHKREKRKPKSQEKPAAKKRLFRWGSAPVVGAVQPV 140
Query: 136 ------AQQQQMQALSVQQPPVSQPA--------PPAPMATAGVP--------------- 166
Q ++ QPP +P PP + + +P
Sbjct: 141 PGMPPMPQAPRVMHHMPGQPPYMRPPGMILPPGLPPGQIPSRAMPPQQLIPGQMPHAQPL 200
Query: 167 -EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAK 225
E PPN ILFLTNLPEET+E+MLSMLF QFPGFKEVRLVP RHDI FVEF+NE+Q+ AA+
Sbjct: 201 SENPPNHILFLTNLPEETNELMLSMLFTQFPGFKEVRLVPGRHDIDFVEFDNEVQAGAAR 260
Query: 226 LALHGFKITPTHAMKISFAKK 246
L GFKIT +AMKISFAKK
Sbjct: 261 DVLQGFKITQNNAMKISFAKK 281
>gi|63592914|ref|XP_356179.3| PREDICTED: U1 small nuclear ribonucleoprotein A-like isoform 1 [Mus
musculus]
Length = 281
Score = 249 bits (637), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 139/261 (53%), Positives = 169/261 (64%), Gaps = 33/261 (12%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
I +LKKS YAIFSQFGQI+DI+ ++LKMRGQ+FVIFKE++S NALRSMQGFPFY K
Sbjct: 21 IKKDELKKSPYAIFSQFGQILDILVSQSLKMRGQSFVIFKEVSSTINALRSMQGFPFYGK 80
Query: 79 PMRIQYSKTDSDVISKIKGTFMERPKKVRKQ-PAPVEDPAEAKKSKKKAAKEQARLMQ-- 135
PM IQY+KTDSD+I+K+KGTF+ER +K K+ P E PA K + +Q
Sbjct: 81 PMHIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQEKPAVKKGCSGWGSAPVVGAVQPV 140
Query: 136 ------AQQQQMQALSVQQPPVSQPA--------PPAPMATAGVP--------------- 166
Q ++ QPP +P PP + + +P
Sbjct: 141 PGMPPMPQAPRVMHHMPGQPPYMRPPGMILPPGLPPGQIPSRAMPPQQLIPGQMPHAQPL 200
Query: 167 -EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAK 225
E PPN ILFLTNLPEET+E+MLSMLF QFPGFKEVRLVP RHDI FVEF+NE+Q+ AA+
Sbjct: 201 SENPPNHILFLTNLPEETNELMLSMLFTQFPGFKEVRLVPGRHDIDFVEFDNEVQAGAAR 260
Query: 226 LALHGFKITPTHAMKISFAKK 246
L GFKIT +AMKISFAKK
Sbjct: 261 DVLQGFKITQNNAMKISFAKK 281
>gi|149263421|ref|XP_995150.2| PREDICTED: U1 small nuclear ribonucleoprotein A-like [Mus musculus]
Length = 309
Score = 247 bits (630), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 143/270 (52%), Positives = 170/270 (62%), Gaps = 37/270 (13%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LKKSLYAIFSQFGQI+DI+ ++LKMRGQ FVIFKE+ ATNAL S
Sbjct: 15 IYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSQSLKMRGQVFVIFKEVTIATNALWS 74
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQ-PAPVEDPAEAKKSKKKAAK 128
M GFPFYDKPMRIQY+KT+SD I+K+KGTF+ER K K+ P E PA K + AA
Sbjct: 75 MLGFPFYDKPMRIQYTKTESDNIAKMKGTFVERDHKGEKRKPKSQETPAAKKAVQGGAAA 134
Query: 129 EQARLMQ--------AQQQQMQALSVQQPPVSQPA---PPAPMATAGVP----------- 166
+Q Q ++ QPP PA PP +A +P
Sbjct: 135 PVVGAVQPVPGMPPMPQAPRIMHHVPGQPPYMPPAGMIPPTGLAPGQIPPGAMPPQQLMP 194
Query: 167 ----------EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFE 216
E PPN ILFLTNLPEET+E+MLSMLF QFPGFKE LVP HDIAFVEF+
Sbjct: 195 GQMPPAPPLSENPPNHILFLTNLPEETNELMLSMLFTQFPGFKEAHLVPGCHDIAFVEFD 254
Query: 217 NEMQSAAAKLALHGFKITPTHAMKISFAKK 246
NE+Q+ AA AL GFKIT +AMKISF KK
Sbjct: 255 NEVQAGAALDALQGFKITQNNAMKISFVKK 284
>gi|432953883|ref|XP_004085463.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like isoform 1
[Oryzias latipes]
Length = 217
Score = 246 bits (628), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 136/237 (57%), Positives = 169/237 (71%), Gaps = 32/237 (13%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ +I+ +LK+SLYA+FSQFGQI+ +VALKT++MRGQAFV+FKE+A+ATNALR
Sbjct: 9 IYINNINDKVKKEELKRSLYALFSQFGQILSVVALKTMRMRGQAFVVFKELAAATNALRQ 68
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
+QGFPFY+KPMRIQY+KTDS+VI+K+KGTF + E KK KKK A+E
Sbjct: 69 LQGFPFYNKPMRIQYAKTDSEVIAKMKGTFGD---------------KEKKKEKKKKAQE 113
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLS 189
L ++ A +V P VP+ PPN ILFL NLPEET+EMMLS
Sbjct: 114 ---LAANAAKKPAAAAV----------PGLTLALQVPDNPPNHILFLNNLPEETNEMMLS 160
Query: 190 MLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
MLFNQFPGFKEVRLVP +HDIAFVEFE++ Q+ AK AL GF+IT T AMKI+FAKK
Sbjct: 161 MLFNQFPGFKEVRLVPGKHDIAFVEFESDTQAGVAKDALQGFRITATCAMKITFAKK 217
>gi|198434776|ref|XP_002132167.1| PREDICTED: similar to GH24608 isoform 2 [Ciona intestinalis]
Length = 220
Score = 246 bits (628), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 130/220 (59%), Positives = 156/220 (70%), Gaps = 25/220 (11%)
Query: 27 SLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSK 86
SLYAIFSQFGQI+DIVA+KTLKMRGQAFVIFKEI+SATNALRSMQGFPFYDKPMR+ YSK
Sbjct: 26 SLYAIFSQFGQILDIVAMKTLKMRGQAFVIFKEISSATNALRSMQGFPFYDKPMRLAYSK 85
Query: 87 TDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSV 146
DSDVI+K+KGT+ ER +++ + + ++ Q+ +SV
Sbjct: 86 KDSDVIAKMKGTYQER-----------------------TKEKKKKKKEPKKVQILYISV 122
Query: 147 QQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPN 206
P Q A A + PPN ILFL NLP ET E ML+MLFN+F GFKEVRLVP
Sbjct: 123 SAAPKGQGA--GGRADDDGSKNPPNHILFLNNLPPETQEEMLNMLFNRFNGFKEVRLVPG 180
Query: 207 RHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
RHDIAFVEFE E Q++ AK AL GFKI+P++AMK++FAKK
Sbjct: 181 RHDIAFVEFEGEQQASEAKGALQGFKISPSNAMKVTFAKK 220
>gi|195995899|ref|XP_002107818.1| hypothetical protein TRIADDRAFT_18899 [Trichoplax adhaerens]
gi|190588594|gb|EDV28616.1| hypothetical protein TRIADDRAFT_18899 [Trichoplax adhaerens]
Length = 204
Score = 245 bits (625), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 124/220 (56%), Positives = 153/220 (69%), Gaps = 43/220 (19%)
Query: 27 SLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSK 86
SLYAIFSQFG I+DI+A+KTLKMRGQAFV+F++I+SATNALR+MQGFPFY+KPMRI Y K
Sbjct: 28 SLYAIFSQFGAILDIIAMKTLKMRGQAFVVFEDISSATNALRAMQGFPFYEKPMRITYCK 87
Query: 87 TDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSV 146
+ SD ++K G+++ R KKVR++ P E A
Sbjct: 88 SKSDAVAKKDGSYVPREKKVREKRKPDEGMPHA--------------------------- 120
Query: 147 QQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPN 206
AG E+ PN+ILFLTNLPEET+E+MLSMLFNQFPG+KEVRLVP
Sbjct: 121 ----------------AGSQEELPNKILFLTNLPEETTELMLSMLFNQFPGYKEVRLVPG 164
Query: 207 RHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
RHDIAFVEFE+E+Q+A A+ +L+GFKITPTH M I+FAKK
Sbjct: 165 RHDIAFVEFESEIQAATARNSLNGFKITPTHQMNIAFAKK 204
>gi|391337372|ref|XP_003743043.1| PREDICTED: LOW QUALITY PROTEIN: U2 small nuclear ribonucleoprotein
B''-like [Metaseiulus occidentalis]
Length = 212
Score = 243 bits (621), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 134/240 (55%), Positives = 165/240 (68%), Gaps = 37/240 (15%)
Query: 11 TNFVYVTHISSTDLKK----SLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNA 66
N +Y+ +++ K+ SL+AIFSQFG I+DIVALKTLKMRGQAFV FKEI +A+ A
Sbjct: 6 NNTIYINNLNEKVKKEELKKSLFAIFSQFGPILDIVALKTLKMRGQAFVAFKEINAASEA 65
Query: 67 LRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKA 126
LRSMQGFPF+DKPMRIQY+K+DSDV++K+KGTF+ER KK P E + KKK
Sbjct: 66 LRSMQGFPFFDKPMRIQYAKSDSDVVAKMKGTFVERQKK----------PIEKVQPKKKE 115
Query: 127 AKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEM 186
+K + R A P P+A +QPPN ILFLT LPEET++M
Sbjct: 116 SKFR-RFXVAT-----------------GPSGPVA-----DQPPNAILFLTGLPEETNDM 152
Query: 187 MLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
ML MLF QFPGFKEVRL+P R DIAFVE+E+E QS AAK L GFK+TPT ++I+FAKK
Sbjct: 153 MLQMLFGQFPGFKEVRLIPGRPDIAFVEYEDEAQSTAAKNGLQGFKVTPTAPIRITFAKK 212
>gi|359358253|gb|AEV40671.1| SNF [Antheraea pernyi]
Length = 228
Score = 243 bits (620), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 144/243 (59%), Positives = 158/243 (65%), Gaps = 35/243 (14%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFK-----EIASAT 64
+Y+ + I +LKKSLYAIFSQFGQI D + Q EI+SAT
Sbjct: 11 IYINNLNEKIKKDELKKSLYAIFSQFGQICDSCD-HDYEFDAQCPGCMPAGRRLEISSAT 69
Query: 65 NALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKK 124
ALRSMQGFPFYDKPMRIQYSKTDSDVI+KIKGTF ERPK+ P K +
Sbjct: 70 VALRSMQGFPFYDKPMRIQYSKTDSDVIAKIKGTFQERPKR----------PKMPKGTDD 119
Query: 125 KAAKEQARLMQAQQQQMQALSVQQPPVSQPA-PPAPMATAGVPEQPPNQILFLTNLPEET 183
K+ V +P A P + V EQPPNQILFLTNLP+ET
Sbjct: 120 SKKKKGK-------------DVSRPGAVHGANAPGVLNNINV-EQPPNQILFLTNLPDET 165
Query: 184 SEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISF 243
SEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEF NEMQSAAAK AL GFKITPTHAMKI+F
Sbjct: 166 SEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFGNEMQSAAAKEALQGFKITPTHAMKITF 225
Query: 244 AKK 246
AKK
Sbjct: 226 AKK 228
>gi|377835922|ref|XP_003688944.1| PREDICTED: U1 small nuclear ribonucleoprotein A-like [Mus musculus]
Length = 309
Score = 243 bits (620), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 143/274 (52%), Positives = 172/274 (62%), Gaps = 45/274 (16%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LKKSLYAIFSQFGQI+DI+ ++LKMRGQ FVIFKE+ ATNALRS
Sbjct: 15 IYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSQSLKMRGQVFVIFKEVTIATNALRS 74
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERP-KKVRKQPAPVEDPAEAKKSKKKAAK 128
M GFPFYDKPMRIQY+KTDSD+I+K+KGTF+ER K +++P E PA K + AA
Sbjct: 75 MLGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDYKGEKRKPKSQETPAAKKAVQGGAAA 134
Query: 129 ----------------EQARLMQ-----------AQQQQMQALSVQQ-PPVSQPA----- 155
+ R+M L+ Q PP + P
Sbjct: 135 PVVGAVQPVPGMPRMPQAPRIMHHVPGQPPYMPPPGIIPPTGLAPGQIPPGAMPPQQLMP 194
Query: 156 ---PPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAF 212
PPAP + E PPN ILFLTNLPEET+E+MLSMLF QF GFKE LVP R DIAF
Sbjct: 195 GQMPPAPPLS----ENPPNHILFLTNLPEETNELMLSMLFTQFRGFKEAGLVPGRLDIAF 250
Query: 213 VEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
VEF+NE+Q+ AA AL GFKIT +AMKISF KK
Sbjct: 251 VEFDNEVQAGAALDALQGFKITQNNAMKISFVKK 284
>gi|198434778|ref|XP_002132163.1| PREDICTED: similar to GH24608 isoform 1 [Ciona intestinalis]
Length = 216
Score = 242 bits (618), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 129/220 (58%), Positives = 153/220 (69%), Gaps = 29/220 (13%)
Query: 27 SLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSK 86
SLYAIFSQFGQI+DIVA+KTLKMRGQAFVIFKEI+SATNALRSMQGFPFYDKPMR+ YSK
Sbjct: 26 SLYAIFSQFGQILDIVAMKTLKMRGQAFVIFKEISSATNALRSMQGFPFYDKPMRLAYSK 85
Query: 87 TDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSV 146
DSDVI+K+KGT+ ER K+ + +++ + +V
Sbjct: 86 KDSDVIAKMKGTYQERTKEK---------------------------KKKKKEPKKPKAV 118
Query: 147 QQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPN 206
P Q A A + PPN ILFL NLP ET E ML+MLFN+F GFKEVRLVP
Sbjct: 119 SAAPKGQGA--GGRADDDGSKNPPNHILFLNNLPPETQEEMLNMLFNRFNGFKEVRLVPG 176
Query: 207 RHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
RHDIAFVEFE E Q++ AK AL GFKI+P++AMK++FAKK
Sbjct: 177 RHDIAFVEFEGEQQASEAKGALQGFKISPSNAMKVTFAKK 216
>gi|324507603|gb|ADY43223.1| U2 small nuclear ribonucleoprotein B [Ascaris suum]
Length = 226
Score = 242 bits (617), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 127/248 (51%), Positives = 168/248 (67%), Gaps = 28/248 (11%)
Query: 5 LAHICVTNFVYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEI 60
+A I + +Y+ +++ +LKK+LYAIFSQFGQI+DI+A KTLKMRGQA VIFKEI
Sbjct: 1 MADIRPNHTIYINNLNEKTKKDELKKALYAIFSQFGQIIDILAFKTLKMRGQAHVIFKEI 60
Query: 61 ASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKK--VRKQPAPVEDPAE 118
+SATNALR+MQGFPFYDKPMRIQ+++ DSDVI+K KGT+ +RPKK + KQ A
Sbjct: 61 SSATNALRAMQGFPFYDKPMRIQFAREDSDVIAKAKGTYTDRPKKHLLAKQ-------AA 113
Query: 119 AKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTN 178
+K KK ++ + V + P P A A PPN+ILF TN
Sbjct: 114 GEKRKKAGPPRDSKKAR---------------VEKAVPNKPAAAAVEKTNPPNKILFCTN 158
Query: 179 LPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHA 238
LPEET+E MLS+LFN +PG K++R +PNR DIAFVEFE+E ++ A+ AL+ FKITP+
Sbjct: 159 LPEETTEQMLSLLFNPYPGLKDIRRIPNRPDIAFVEFESEGEATVARNALNNFKITPSQV 218
Query: 239 MKISFAKK 246
M +++A K
Sbjct: 219 MHVNYANK 226
>gi|346473641|gb|AEO36665.1| hypothetical protein [Amblyomma maculatum]
Length = 183
Score = 240 bits (613), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 127/198 (64%), Positives = 150/198 (75%), Gaps = 15/198 (7%)
Query: 49 MRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRK 108
MRGQAFV FK+I SATNALRSMQGFPFYDKPMRIQY+K++SD ++K+KGT++E +K
Sbjct: 1 MRGQAFVAFKDINSATNALRSMQGFPFYDKPMRIQYAKSESDAVAKLKGTYVESSRK--- 57
Query: 109 QPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQ 168
PAE + + KK+ K++ + Q M + P+ AT +PEQ
Sbjct: 58 -----RTPAEGEAAPKKSKKKKTQPQPQPQPAMLMMGGAGIPMVA-------ATGALPEQ 105
Query: 169 PPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLAL 228
PPNQILFLTNLPEET+EMMLSMLFNQFPGFKEVRLVP RHDIAFVEFENE+QS+AAK AL
Sbjct: 106 PPNQILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENEIQSSAAKEAL 165
Query: 229 HGFKITPTHAMKISFAKK 246
GFKITPTHAMKI+FAKK
Sbjct: 166 QGFKITPTHAMKITFAKK 183
>gi|156402885|ref|XP_001639820.1| predicted protein [Nematostella vectensis]
gi|156226951|gb|EDO47757.1| predicted protein [Nematostella vectensis]
Length = 209
Score = 236 bits (601), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 131/220 (59%), Positives = 151/220 (68%), Gaps = 36/220 (16%)
Query: 27 SLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSK 86
SLYAIFSQFG I+DIVALKTLKMRGQAFV+FK+I SATNALRSMQGFPFYDKPMRIQY+K
Sbjct: 26 SLYAIFSQFGPILDIVALKTLKMRGQAFVVFKDIGSATNALRSMQGFPFYDKPMRIQYAK 85
Query: 87 TDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSV 146
SD ++K +GTF+ E K +K+ A E A
Sbjct: 86 GKSDAVAKAEGTFVP---------------REKKPKEKRKAPENA--------------- 115
Query: 147 QQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPN 206
P++ APMA PN ILFLTNLP ET+E+MLSMLFNQFPGFKEVRLVP
Sbjct: 116 -GAPIA-----APMAIPTQQPDLPNNILFLTNLPMETTELMLSMLFNQFPGFKEVRLVPG 169
Query: 207 RHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
R DI+FVEFENE+Q+ AK AL GF+ITPT+AM IS+AKK
Sbjct: 170 RSDISFVEFENEVQAGTAKDALQGFRITPTNAMSISYAKK 209
>gi|327276255|ref|XP_003222885.1| PREDICTED: u1 small nuclear ribonucleoprotein A-like [Anolis
carolinensis]
Length = 280
Score = 234 bits (597), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 136/274 (49%), Positives = 172/274 (62%), Gaps = 46/274 (16%)
Query: 14 VYVTHISSTDLKK----SLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ +++ K S+ + + GQI+DI+ ++KMRGQAFVIFKE++S+TNALRS
Sbjct: 12 IYINNLNEKIKKDGKFISVSMLLNPSGQILDILVSHSMKMRGQAFVIFKEVSSSTNALRS 71
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQ-PAPVEDPAEAKKSKKKAA- 127
MQGFPFYDKPMRIQY+K DSD+I+K+KGT++ER +K K+ P E PA K+ A
Sbjct: 72 MQGFPFYDKPMRIQYAKMDSDIIAKMKGTYVERDRKREKRKPKGQEAPAVKKQIPGAAPV 131
Query: 128 --------------KEQARLMQAQQQQMQ---------------------ALSVQQPPVS 152
+ R+M Q A+ QQ
Sbjct: 132 APAVQGAVPGMPPMNQGPRMMHHMPGQPPYMPPPGMMPPPGMAPGSIPPGAMPPQQMLPG 191
Query: 153 QPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAF 212
Q AP P++ E PPN ILFLTNLPEET+E+MLSMLFNQFPGFKEVRLVP RHDIAF
Sbjct: 192 QMAPVQPLS-----ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAF 246
Query: 213 VEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
VEF+NE+Q+ AA+ AL GFKIT +AMKISFAKK
Sbjct: 247 VEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 280
>gi|449679798|ref|XP_002163097.2| PREDICTED: U2 small nuclear ribonucleoprotein B''-like [Hydra
magnipapillata]
Length = 219
Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 122/225 (54%), Positives = 157/225 (69%), Gaps = 36/225 (16%)
Query: 27 SLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSK 86
+LYAIF+QFG I+D+VA+KTLKMRGQAFV+FK+I SATNALRSMQGFPFYDKPMRI Y +
Sbjct: 26 ALYAIFTQFGSILDVVAMKTLKMRGQAFVVFKDIPSATNALRSMQGFPFYDKPMRIAYCR 85
Query: 87 TDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSV 146
+ SD ++K++ TF+ R KK++++ ++KKK AK+
Sbjct: 86 SKSDAVAKLENTFVPRDKKLKRK---------VDETKKKPAKQ----------------- 119
Query: 147 QQPPVSQPAPPAPMATAG-----VPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEV 201
+ Q P P + G +PE PNQILFL+ LP+ET+E+ML+MLF QF G+KEV
Sbjct: 120 ----LRQSVPIIPQSMPGHMQMQMPEI-PNQILFLSELPDETTEIMLAMLFQQFDGYKEV 174
Query: 202 RLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
RLVP RHDIAFVEFE ++ AK L+GFKITPTHAMKI+FA+K
Sbjct: 175 RLVPGRHDIAFVEFEEAEKARIAKDTLNGFKITPTHAMKITFARK 219
>gi|402584435|gb|EJW78376.1| U1 small nuclear ribonucleoprotein A [Wuchereria bancrofti]
Length = 241
Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 114/220 (51%), Positives = 158/220 (71%), Gaps = 22/220 (10%)
Query: 27 SLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSK 86
+LYAIFSQFGQI+DI+A KTLKMRGQA VIFKEI+SATNALR+MQGFPFYDKPMRIQ+++
Sbjct: 44 ALYAIFSQFGQIIDIMAFKTLKMRGQAHVIFKEISSATNALRAMQGFPFYDKPMRIQFAR 103
Query: 87 TDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSV 146
DSDVI+K KGT+++RPKK AK++ + K+ + + + ++ +M ++
Sbjct: 104 EDSDVIAKAKGTYIDRPKK----------HLLAKQAAGEKRKKTSHVKENKKMRMDKIAT 153
Query: 147 QQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPN 206
+ + + A PPN+ILF TNLPEET+E MLS+LFN +PG K++R +PN
Sbjct: 154 GKTELPEKA------------NPPNKILFCTNLPEETTEQMLSLLFNPYPGLKDIRRIPN 201
Query: 207 RHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
R DIAFVEFE E ++ +A+ L+ FKITP+ +M +++A K
Sbjct: 202 RPDIAFVEFETEAEATSARAGLNNFKITPSQSMYVNYANK 241
>gi|170588483|ref|XP_001899003.1| U1 small nuclear ribonucleoprotein A [Brugia malayi]
gi|158593216|gb|EDP31811.1| U1 small nuclear ribonucleoprotein A, putative [Brugia malayi]
Length = 233
Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 114/220 (51%), Positives = 158/220 (71%), Gaps = 22/220 (10%)
Query: 27 SLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSK 86
+LYAIFSQFGQI+DI+A KTLKMRGQA VIFKEI+SATNALR+MQGFPFYDKPMRIQ+++
Sbjct: 36 ALYAIFSQFGQIIDIMAFKTLKMRGQAHVIFKEISSATNALRAMQGFPFYDKPMRIQFAR 95
Query: 87 TDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSV 146
DSDVI+K KGT+++RPKK AK++ + K+ + + + ++ +M ++
Sbjct: 96 EDSDVIAKAKGTYIDRPKK----------HLLAKQAAGEKRKKTSHVKENKKMRMDKIAT 145
Query: 147 QQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPN 206
+ + + A PPN+ILF TNLPEET+E MLS+LFN +PG K++R +PN
Sbjct: 146 GKTELPEKA------------NPPNKILFCTNLPEETTEQMLSLLFNPYPGLKDIRRIPN 193
Query: 207 RHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
R DIAFVEFE E ++ +A+ L+ FKITP+ +M +++A K
Sbjct: 194 RPDIAFVEFETEAEATSARSGLNNFKITPSQSMYVNYANK 233
>gi|112983808|ref|NP_001037384.1| U1 small nuclear ribonucleoprotein A [Bombyx mori]
gi|76496416|gb|ABA43713.1| SNF [Bombyx mori]
Length = 209
Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 126/190 (66%), Positives = 138/190 (72%), Gaps = 24/190 (12%)
Query: 27 SLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSK 86
SLYAIFSQFGQI+DIVA+KTLKMRGQAFVIFKEI+SAT ALRSMQGFPFYDKPMRIQYSK
Sbjct: 28 SLYAIFSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRIQYSK 87
Query: 87 TDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSV 146
DSD+I+K KGTF ERPK+ + P KKK K+ +RL
Sbjct: 88 IDSDIIAKSKGTFQERPKRPKL-------PKGTDDGKKKKNKDPSRL------------- 127
Query: 147 QQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPN 206
+ P A + EQPPNQILFLTNLP+ETSEMMLSMLFNQFPGFKEVRLVPN
Sbjct: 128 ----IGHGIPGAGILNNVNAEQPPNQILFLTNLPDETSEMMLSMLFNQFPGFKEVRLVPN 183
Query: 207 RHDIAFVEFE 216
RHDIAFVE E
Sbjct: 184 RHDIAFVELE 193
>gi|393909446|gb|EFO26195.2| hypothetical protein LOAG_02293 [Loa loa]
Length = 254
Score = 229 bits (585), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 118/224 (52%), Positives = 157/224 (70%), Gaps = 30/224 (13%)
Query: 27 SLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSK 86
+LYAIFSQFGQI+DI+A KTLKMRGQA VIFKEI+SATNALR+MQGFPFYDKPMRIQ+++
Sbjct: 57 ALYAIFSQFGQIIDIMAFKTLKMRGQAHVIFKEISSATNALRAMQGFPFYDKPMRIQFAR 116
Query: 87 TDSDVISKIKGTFMERPKK--VRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQAL 144
DSDVI+K KGT+++RPKK + KQ A +K KK ++++ M+ +
Sbjct: 117 EDSDVIAKAKGTYVDRPKKHLLAKQAA-------GEKRKKTNHVKESKKMRIDK------ 163
Query: 145 SVQQPPVSQPAPPAPMATAGVPEQ--PPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVR 202
+PE+ PPN+ILF TNLPEET+E MLS+LFN +PG K++R
Sbjct: 164 -------------GATGKTELPEKANPPNKILFCTNLPEETTEQMLSLLFNPYPGLKDIR 210
Query: 203 LVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
+PNR DIAFVEFE E ++ +A+ L+ FKITP+ +M +++A K
Sbjct: 211 RIPNRPDIAFVEFETEAEATSARAGLNNFKITPSQSMYVNYANK 254
>gi|312069861|ref|XP_003137879.1| hypothetical protein LOAG_02293 [Loa loa]
Length = 223
Score = 229 bits (584), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 118/224 (52%), Positives = 157/224 (70%), Gaps = 30/224 (13%)
Query: 27 SLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSK 86
+LYAIFSQFGQI+DI+A KTLKMRGQA VIFKEI+SATNALR+MQGFPFYDKPMRIQ+++
Sbjct: 26 ALYAIFSQFGQIIDIMAFKTLKMRGQAHVIFKEISSATNALRAMQGFPFYDKPMRIQFAR 85
Query: 87 TDSDVISKIKGTFMERPKK--VRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQAL 144
DSDVI+K KGT+++RPKK + KQ A +K KK ++++ M+ +
Sbjct: 86 EDSDVIAKAKGTYVDRPKKHLLAKQAA-------GEKRKKTNHVKESKKMRIDK------ 132
Query: 145 SVQQPPVSQPAPPAPMATAGVPEQ--PPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVR 202
+PE+ PPN+ILF TNLPEET+E MLS+LFN +PG K++R
Sbjct: 133 -------------GATGKTELPEKANPPNKILFCTNLPEETTEQMLSLLFNPYPGLKDIR 179
Query: 203 LVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
+PNR DIAFVEFE E ++ +A+ L+ FKITP+ +M +++A K
Sbjct: 180 RIPNRPDIAFVEFETEAEATSARAGLNNFKITPSQSMYVNYANK 223
>gi|148706068|gb|EDL38015.1| mCG22457 [Mus musculus]
Length = 275
Score = 225 bits (573), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 139/278 (50%), Positives = 170/278 (61%), Gaps = 56/278 (20%)
Query: 11 TNFVYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNA 66
+ +Y+ + I +LKKSLYAIFSQFGQI+DI+ +++KMRGQAFVIFKE+
Sbjct: 12 NDTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSMKMRGQAFVIFKEV------ 65
Query: 67 LRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQ-PAPVEDPAEAKKSKKK 125
++ MQGFPFY KPM IQY+KTDSD+I+K+KGTF ER +K K+ P E PA K +
Sbjct: 66 MKPMQGFPFY-KPMHIQYAKTDSDIIAKMKGTFEERDRKREKRKPKSQETPAAKKAVQGG 124
Query: 126 AAK----------------EQARLMQAQQQQM-----------------QALSVQQPPV- 151
AA + R+M Q Q L PP
Sbjct: 125 AAAPMVGAVQPVLGMPPMPQAPRVMHHTLGQSPYMPPPDMIPPPGLAPGQILPGAMPPQQ 184
Query: 152 ---SQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRH 208
Q P P++ E PPN ILFLTNLPEET+E+MLSMLFNQFPGFKEVRLV RH
Sbjct: 185 LMPGQMPPAQPLS-----ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV--RH 237
Query: 209 DIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
DIAFVEF+NE+Q+ AA+ AL GFKIT +AMKIS AKK
Sbjct: 238 DIAFVEFDNEVQAGAARDALQGFKITQNNAMKISLAKK 275
>gi|344255667|gb|EGW11771.1| U2 small nuclear ribonucleoprotein B'' [Cricetulus griseus]
Length = 180
Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 121/200 (60%), Positives = 143/200 (71%), Gaps = 20/200 (10%)
Query: 47 LKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKV 106
+KMRGQAFVIFKE+ S+TNALR +QGFPFY KPMRIQY+KTDSD+ISK++GTF ++ KK
Sbjct: 1 MKMRGQAFVIFKELGSSTNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKK 60
Query: 107 RKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVP 166
K+ A + A A +KK Q A Q A + Q VP
Sbjct: 61 EKKKAKTMEQAAAAANKKPG---QGTPNSANTQGNAAPNPQ-----------------VP 100
Query: 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKL 226
+ PPN ILFL NLPEET+EMMLSMLFNQFPGFKEVRLVP RHDIAFVEFEN+ Q+ AA+
Sbjct: 101 DYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARD 160
Query: 227 ALHGFKITPTHAMKISFAKK 246
AL GFKITP+HAMKI++AKK
Sbjct: 161 ALQGFKITPSHAMKITYAKK 180
>gi|116781538|gb|ABK22144.1| unknown [Picea sitchensis]
Length = 235
Score = 223 bits (567), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 123/248 (49%), Positives = 164/248 (66%), Gaps = 17/248 (6%)
Query: 3 IILAHICVTNFVYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFK 58
++ A I +YV +++ +LKKSLYA+FSQFG+I DIVALKT K+RGQA+V+F
Sbjct: 1 MMSADIPPNQTIYVNNLNERVKKEELKKSLYALFSQFGRIADIVALKTTKLRGQAWVVFD 60
Query: 59 EIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAE 118
EI +A+NALR MQGFPFYDKPMRIQY K+ SD I+K+ GT++ R K+ ++ E+ AE
Sbjct: 61 EITAASNALRQMQGFPFYDKPMRIQYGKSKSDAIAKVDGTYVPREKRKKQ-----EEKAE 115
Query: 119 AKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTN 178
K+ K++ QA A A S Q +P+ P A PPN ILF+ N
Sbjct: 116 -KRRKEQHETHQAGNGPATSYGAAAASQSQFQQGKPSSQEPPA-------PPNNILFIQN 167
Query: 179 LPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHA 238
LP ET+ MML MLF Q+PGFKEVR++ + IAFVE+ +EMQ++ A AL GFKITP +
Sbjct: 168 LPHETTTMMLQMLFQQYPGFKEVRMIEAKPGIAFVEYGDEMQASVAMQALQGFKITPQNP 227
Query: 239 MKISFAKK 246
M I++AKK
Sbjct: 228 MLITYAKK 235
>gi|344298221|ref|XP_003420792.1| PREDICTED: U1 small nuclear ribonucleoprotein A-like [Loxodonta
africana]
Length = 200
Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 125/238 (52%), Positives = 153/238 (64%), Gaps = 54/238 (22%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LKKSLYAIFSQFGQI+DI+ ++LKMRGQAFVIFKE++SATNALRS
Sbjct: 12 IYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRS 71
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQ-PAPVEDPAEAKKSKKKAAK 128
MQGFPFYDKPMRIQY+KTDSD+I+K+KGTF+ER +K K+ P E PA K + AA
Sbjct: 72 MQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPAAKKAVQGGAA- 130
Query: 129 EQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMML 188
A ++ A V P PP +A
Sbjct: 131 --ASVVGA--------------VQGPVPPRGLA--------------------------- 147
Query: 189 SMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
+FPGFKEVRLVP RHDIAFVEF+NE+Q+ AA+ AL GFKIT ++AMKISFAKK
Sbjct: 148 -----RFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQSNAMKISFAKK 200
>gi|148696478|gb|EDL28425.1| mCG19497, isoform CRA_b [Mus musculus]
Length = 203
Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 123/237 (51%), Positives = 149/237 (62%), Gaps = 46/237 (19%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LK+SLYA+FSQFG ++DIVALKT+KMRGQAFVIFKE+ S+TNALR
Sbjct: 9 IYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQ 68
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
+QGFPFY KPM + K + + + ++P Q P AA
Sbjct: 69 LQGFPFYGKPMEKKKEKKKAKTMEQAAAAANKKP----GQGTP------------NAANT 112
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLS 189
Q A P P VP+ PPN ILFL NLPEET+EMMLS
Sbjct: 113 QGT----------------------AAPNPQ----VPDYPPNYILFLNNLPEETNEMMLS 146
Query: 190 MLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
MLFNQFPGFKEVRLVP RHDIAFVEFEN+ Q+ AA+ AL GFKITP+HAMKI++AKK
Sbjct: 147 MLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 203
>gi|195554301|ref|XP_002076873.1| GD24751 [Drosophila simulans]
gi|194202891|gb|EDX16467.1| GD24751 [Drosophila simulans]
Length = 169
Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 125/198 (63%), Positives = 142/198 (71%), Gaps = 29/198 (14%)
Query: 49 MRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRK 108
MRGQAFVIFKEI SA+NALR+MQGFPFYDKPM+I YSK+DSD+++KIKGTF ERPKK++
Sbjct: 1 MRGQAFVIFKEIGSASNALRTMQGFPFYDKPMQIAYSKSDSDIVAKIKGTFKERPKKIKP 60
Query: 109 QPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQ 168
+ K KK ++ E + P +Q EQ
Sbjct: 61 PKPAPGTDEKKDKKKKPSSAENSN-----------------PNTQT------------EQ 91
Query: 169 PPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLAL 228
PPNQILFLTNLPEET+EMMLSMLFNQFPGFKEVRLVPNRHDIAFVEF E+QS AAK AL
Sbjct: 92 PPNQILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFTTELQSNAAKEAL 151
Query: 229 HGFKITPTHAMKISFAKK 246
GFKITPTHAMKI+FAKK
Sbjct: 152 QGFKITPTHAMKITFAKK 169
>gi|149041256|gb|EDL95189.1| rCG27500, isoform CRA_b [Rattus norvegicus]
Length = 203
Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 122/237 (51%), Positives = 149/237 (62%), Gaps = 46/237 (19%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LK+SLYA+FSQFG ++DIVALKT+KMRGQAFVIFKE+ S+TNALR
Sbjct: 9 IYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQ 68
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
+QGFPFY KPM + K + + + ++P Q P +A
Sbjct: 69 LQGFPFYGKPMEKKKEKKKAKTMEQAAAAANKKP----GQGTP------------NSANT 112
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLS 189
Q A P P VP+ PPN ILFL NLPEET+EMMLS
Sbjct: 113 QGN----------------------AAPNPQ----VPDYPPNYILFLNNLPEETNEMMLS 146
Query: 190 MLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
MLFNQFPGFKEVRLVP RHDIAFVEFEN+ Q+ AA+ AL GFKITP+HAMKI++AKK
Sbjct: 147 MLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 203
>gi|340368063|ref|XP_003382572.1| PREDICTED: hypothetical protein LOC100640859 [Amphimedon
queenslandica]
Length = 790
Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 118/239 (49%), Positives = 155/239 (64%), Gaps = 32/239 (13%)
Query: 12 NFVYVTHISSTDLKK----SLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNAL 67
N +Y+ +++ K+ SLYAIFSQFG I+DIVALKTLKMRGQAFV+F++I SATNAL
Sbjct: 580 NTIYINNLNEKVKKEELKKSLYAIFSQFGDILDIVALKTLKMRGQAFVVFRDIGSATNAL 639
Query: 68 RSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAA 127
RSMQGFPFYDKPMRI Y+KT SD I+K+ G+++E+ KK ++ P KK+K+ A+
Sbjct: 640 RSMQGFPFYDKPMRIAYAKTKSDAIAKVDGSYVEKKKKKSEEARP-------KKAKQSAS 692
Query: 128 KEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMM 187
+ + PN+ILF++NLP ET+E+M
Sbjct: 693 AGGSNASGSTGGGGGNKG---------------------SSIPNKILFISNLPPETTEVM 731
Query: 188 LSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
L MLF QFPG +E+RLVP+R DIAFVE+ENE Q+ A +L FKI PTH MKI++A K
Sbjct: 732 LKMLFEQFPGLQEIRLVPSRTDIAFVEYENESQATEAMSSLQDFKIVPTHPMKITYANK 790
>gi|324523388|gb|ADY48239.1| U2 small nuclear ribonucleoprotein B [Ascaris suum]
Length = 228
Score = 220 bits (561), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 115/247 (46%), Positives = 167/247 (67%), Gaps = 24/247 (9%)
Query: 5 LAHICVTNFVYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEI 60
+A+I + +Y+ +++ +L+K+LY IFS+FGQ++D++A KTLKMRGQA VIFKE+
Sbjct: 1 MAYIKPNHTIYINNLNEKTKKEELRKALYTIFSEFGQVIDVLAFKTLKMRGQAHVIFKEM 60
Query: 61 ASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAK 120
+SA+NALR+MQGFPFYDKPMRIQ+++ DSDVI+K KGT+++R KK
Sbjct: 61 SSASNALRAMQGFPFYDKPMRIQFAREDSDVIAKAKGTYVDRQKKY-------------- 106
Query: 121 KSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPE-QPPNQILFLTNL 179
+ K+A K + R + + VS A AT V + PPN+ILF TNL
Sbjct: 107 QLAKQAEKRKKRGYPKDSKNGATPGHVENTVSDNA-----ATVTVEKTNPPNKILFCTNL 161
Query: 180 PEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAM 239
P ET++ MLS+LF+ +PG K++R VP+R DIAFVEFE+E ++ A+ AL+ FKITP+ A+
Sbjct: 162 PNETTKQMLSILFSPYPGLKDIRRVPDRPDIAFVEFESEGEAIVARTALNDFKITPSQAI 221
Query: 240 KISFAKK 246
++ +A K
Sbjct: 222 RVDYANK 228
>gi|159470585|ref|XP_001693437.1| predicted protein [Chlamydomonas reinhardtii]
gi|158282940|gb|EDP08691.1| predicted protein [Chlamydomonas reinhardtii]
Length = 233
Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 113/238 (47%), Positives = 156/238 (65%), Gaps = 18/238 (7%)
Query: 14 VYVTHI----SSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+YV ++ S ++KK LYA+FSQFG+++D+VA+KT ++RGQA+V+F + A+ATNALR+
Sbjct: 9 IYVNNLYEKLSKEEMKKCLYAMFSQFGRVLDVVAMKTYRLRGQAWVVFTDTAAATNALRT 68
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERP-KKVRKQPAPVEDPAEAKKSKKKAAK 128
MQGFPF+DKP+RI Y+KT SD ++K+ GT+ +P KK R Q K + + K
Sbjct: 69 MQGFPFFDKPIRITYAKTKSDAVAKVDGTY--KPDKKSRAQ----------KNAAARGRK 116
Query: 129 EQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMML 188
R Q + + P+ A ++ AG PN+ILF+ NLPE ++E ML
Sbjct: 117 WSRRTRQGFRDGQGGRNGHPMRRGWPSMQAGVSAAGAAN-APNKILFVQNLPETSNEAML 175
Query: 189 SMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
MLF QFPGF+EVR+V R IAFVE+ENEMQS A L GFKITP +AM I+FAK+
Sbjct: 176 GMLFQQFPGFREVRMVEARPGIAFVEYENEMQSGTAMQGLQGFKITPANAMNITFAKQ 233
>gi|334312138|ref|XP_003339722.1| PREDICTED: u2 small nuclear ribonucleoprotein B''-like [Monodelphis
domestica]
Length = 180
Score = 217 bits (552), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 119/201 (59%), Positives = 140/201 (69%), Gaps = 22/201 (10%)
Query: 47 LKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKV 106
+KMRGQAFVIFKE+ S+TNALR +QGFPFY KPMRIQY+KTDSDVISK++GTF ++ KK
Sbjct: 1 MKMRGQAFVIFKELGSSTNALRQLQGFPFYGKPMRIQYAKTDSDVISKMRGTFADKEKKK 60
Query: 107 RKQPA-PVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGV 165
K+ A +E A A K A + Q S Q P V
Sbjct: 61 EKKKAKSLEQTANAANKKPGQATPNS-------ANTQGNSTQNPQV-------------- 99
Query: 166 PEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAK 225
P+ PPN ILFL NLPEET+EMMLSMLFNQ+P FKEVRL P RHDIAFVEFEN+ Q+ AA+
Sbjct: 100 PDYPPNYILFLNNLPEETNEMMLSMLFNQYPVFKEVRLGPGRHDIAFVEFENDGQAGAAR 159
Query: 226 LALHGFKITPTHAMKISFAKK 246
AL GFKITP+HAMKI++AKK
Sbjct: 160 DALQGFKITPSHAMKITYAKK 180
>gi|294461275|gb|ADE76200.1| unknown [Picea sitchensis]
gi|294464400|gb|ADE77712.1| unknown [Picea sitchensis]
Length = 241
Score = 217 bits (552), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 121/243 (49%), Positives = 164/243 (67%), Gaps = 23/243 (9%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ +++ +LKKSLYA+FSQFG+I+D++ALKTLK RGQA+V+F E+++ATNALR
Sbjct: 12 IYINNLNEKTKLDELKKSLYAVFSQFGKIVDVIALKTLKHRGQAWVVFDEVSAATNALRQ 71
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
MQGFPFYDKPMRIQY+KT SD I+K GT++ R K+ R+ ++ AE K+ ++ +
Sbjct: 72 MQGFPFYDKPMRIQYAKTKSDAIAKADGTYVPREKRRRQ-----DERAERKRREQHHETQ 126
Query: 130 QARLM--QAQQQQMQA---LSVQQPPVSQPA-PPAPMATAGVPEQPPNQILFLTNLPEET 183
Q ++ A A S Q P S+P+ P AP PPN ILF+ NLP ET
Sbjct: 127 QPGVIPNAAYPSGYGAPILGSQMQFPSSRPSLPEAPA--------PPNNILFVQNLPHET 178
Query: 184 SEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISF 243
+ MML MLF Q+ GFKEVR++ + IAFVE+ +EMQS A AL GFKITP + M I++
Sbjct: 179 TSMMLQMLFCQYHGFKEVRMIEAKPGIAFVEYADEMQSTVAMQALQGFKITPQNPMLITY 238
Query: 244 AKK 246
AKK
Sbjct: 239 AKK 241
>gi|388497184|gb|AFK36658.1| unknown [Medicago truncatula]
Length = 232
Score = 216 bits (549), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 116/239 (48%), Positives = 157/239 (65%), Gaps = 15/239 (6%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ +++ +LKKSL+A+FSQFG+I++++A KTLK +GQA+VIF+++ SA+NALR
Sbjct: 3 IYINNLNEKIKIDELKKSLHAVFSQFGKILEVLAFKTLKHKGQAWVIFEDVTSASNALRQ 62
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
MQGFPFYDKPMRIQY++T SDVI+K +GTF+ R K+ R + K KK+ +
Sbjct: 63 MQGFPFYDKPMRIQYARTKSDVIAKAEGTFVPREKRKRH---------DDKAGKKRKDQN 113
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPE--QPPNQILFLTNLPEETSEMM 187
A L A + P P A + +PE PPN ILF+ NLP ET+ MM
Sbjct: 114 DANLAGTGLNPAYAGAYGATPALSQIPYPGGAKSLLPEAPAPPNNILFIQNLPNETTPMM 173
Query: 188 LSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
L MLF Q+PGFKEVR+V + IAFVE+ +EMQS A AL GFKI P + M I++AKK
Sbjct: 174 LQMLFLQYPGFKEVRMVEAKPGIAFVEYGDEMQSTMAMQALQGFKIAPQNPMLITYAKK 232
>gi|302832471|ref|XP_002947800.1| hypothetical protein VOLCADRAFT_103581 [Volvox carteri f.
nagariensis]
gi|300267148|gb|EFJ51333.1| hypothetical protein VOLCADRAFT_103581 [Volvox carteri f.
nagariensis]
Length = 224
Score = 216 bits (549), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 110/237 (46%), Positives = 153/237 (64%), Gaps = 25/237 (10%)
Query: 14 VYVTHI----SSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ ++ +LKK LYA+FSQFG+IMD+VA+KT ++RGQA+V+F + A+ATNALR+
Sbjct: 9 IYINNLYEKLGKEELKKCLYAMFSQFGRIMDVVAMKTYRLRGQAWVVFTDTAAATNALRT 68
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
MQGFPF+DKP+RI Y+K SD ++K+ GT+ P + ++++K AA
Sbjct: 69 MQGFPFFDKPIRITYAKGKSDAVAKVDGTY---------------KPDKKQRAQKNAAAR 113
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLS 189
+A L + + SV + +A A PN+ILF+ NLPE ++E ML
Sbjct: 114 EAMLKRPTGGKAAGASVGGGSAQGAGGGSGLANA------PNKILFVQNLPENSNEAMLG 167
Query: 190 MLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
MLF QFPGF+EVR+V R IAFVEFEN+MQS A L GFKITP +AM IS+AK+
Sbjct: 168 MLFQQFPGFREVRMVEARPGIAFVEFENDMQSTTAMQGLQGFKITPANAMNISYAKQ 224
>gi|217072842|gb|ACJ84781.1| unknown [Medicago truncatula]
Length = 245
Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 116/239 (48%), Positives = 157/239 (65%), Gaps = 15/239 (6%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ +++ +LKKSL+A+FSQFG+I++++A KTLK +GQA+VIF+++ SA+NALR
Sbjct: 16 IYINNLNEKIKIDELKKSLHAVFSQFGKILEVLAFKTLKHKGQAWVIFEDVTSASNALRQ 75
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
MQGFPFYDKPMRIQY++T SDVI+K +GTF+ R K+ R + K KK+ +
Sbjct: 76 MQGFPFYDKPMRIQYARTKSDVIAKAEGTFVPREKRKRH---------DDKAGKKRKDQN 126
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPE--QPPNQILFLTNLPEETSEMM 187
A L A + P P A + +PE PPN ILF+ NLP ET+ MM
Sbjct: 127 DANLAGTGLNPAYAGAYGATPALSQIPYPGGAKSLLPEAPAPPNNILFIQNLPNETTPMM 186
Query: 188 LSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
L MLF Q+PGFKEVR+V + IAFVE+ +EMQS A AL GFKI P + M I++AKK
Sbjct: 187 LQMLFLQYPGFKEVRMVEAKPGIAFVEYGDEMQSTMAMQALQGFKIAPQNPMLITYAKK 245
>gi|449484269|ref|XP_004156835.1| PREDICTED: U1 small nuclear ribonucleoprotein A-like [Cucumis
sativus]
Length = 242
Score = 213 bits (542), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 116/239 (48%), Positives = 157/239 (65%), Gaps = 19/239 (7%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ +++ +LKKSL A+FSQFG+I++++A KTLK +GQA+V+F+E++SATNALR
Sbjct: 17 IYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFEEVSSATNALRQ 76
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
MQGFPFYDKPMRIQY+KT SD+I+K G+F+ R K+ R E+ KK + A +
Sbjct: 77 MQGFPFYDKPMRIQYAKTKSDIIAKSDGSFVPREKRKRH-----EEKGRKKKEQHDANQA 131
Query: 130 QARLMQAQQQQMQALSVQQPPVSQP--APPAPMATAGVPEQPPNQILFLTNLPEETSEMM 187
L A A + Q P S P AP PPN ILF+ NLP ET+ MM
Sbjct: 132 GMGLNPAFAGAYGATAHSQVPYSGGVMVPEAPA--------PPNSILFVQNLPHETTPMM 183
Query: 188 LSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
L MLF Q+PGFKEVR+V + IAFVE+ +E+QS A AL GFK+ P ++M I++AKK
Sbjct: 184 LQMLFCQYPGFKEVRMVEAKPGIAFVEYSDEVQSTVAMQALQGFKMNPQNSMLITYAKK 242
>gi|19347861|gb|AAL85989.1| putative spliceosomal protein (U2B) [Arabidopsis thaliana]
Length = 228
Score = 209 bits (533), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 112/248 (45%), Positives = 159/248 (64%), Gaps = 24/248 (9%)
Query: 3 IILAHICVTNFVYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFK 58
++ A I +Y+ HIS +LK+SLY +FSQFG+++D+VALKT K+RGQA+V+F
Sbjct: 1 MLTADIPPNQSIYIKHISEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFT 60
Query: 59 EIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAE 118
E+ +A+NA+R MQ FPFYDKPMRIQY+K+ SD ++K +G+F+ P + E
Sbjct: 61 EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFV---------PKEKKMKQE 111
Query: 119 AKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTN 178
K +K+ A+E Q S+ +Q P P +G PPN ILF+ N
Sbjct: 112 EKVERKRHAEE-----------TQQPSMPNGATTQNGMPPPFQPSGQDTMPPNNILFIHN 160
Query: 179 LPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHA 238
LP ET+ MML +LF Q+PGFKE+R++ + IAFVE+E+++QS+ A AL GFKITP +
Sbjct: 161 LPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPRNP 220
Query: 239 MKISFAKK 246
M +SFAKK
Sbjct: 221 MVVSFAKK 228
>gi|30679897|ref|NP_172177.3| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332189938|gb|AEE28059.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 228
Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 111/248 (44%), Positives = 159/248 (64%), Gaps = 24/248 (9%)
Query: 3 IILAHICVTNFVYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFK 58
++ A I +Y+ HI+ +LK+SLY +FSQFG+++D+VALKT K+RGQA+V+F
Sbjct: 1 MLTADIPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFT 60
Query: 59 EIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAE 118
E+ +A+NA+R MQ FPFYDKPMRIQY+K+ SD ++K +G+F+ P + E
Sbjct: 61 EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFV---------PKEKKMKQE 111
Query: 119 AKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTN 178
K +K+ A+E Q S+ +Q P P +G PPN ILF+ N
Sbjct: 112 EKVERKRHAEE-----------TQQPSMPNGATTQNGMPPPFQPSGQDTMPPNNILFIHN 160
Query: 179 LPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHA 238
LP ET+ MML +LF Q+PGFKE+R++ + IAFVE+E+++QS+ A AL GFKITP +
Sbjct: 161 LPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPQNP 220
Query: 239 MKISFAKK 246
M +SFAKK
Sbjct: 221 MVVSFAKK 228
>gi|322797045|gb|EFZ19352.1| hypothetical protein SINV_13322 [Solenopsis invicta]
Length = 152
Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 115/166 (69%), Positives = 129/166 (77%), Gaps = 14/166 (8%)
Query: 81 RIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQ 140
RIQY+KTDSD+I+K+KGTF ERPKK K+ PV D EAK++KK+A KEQA+ +QQ
Sbjct: 1 RIQYAKTDSDIIAKMKGTFAERPKKP-KRVIPVAD-EEAKRAKKRA-KEQAK--HSQQIG 55
Query: 141 MQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKE 200
A Q P + VPEQPPNQILFLTNLP+ETSEMMLSMLFNQFPGFKE
Sbjct: 56 YHASVPQHPG---------LVNTAVPEQPPNQILFLTNLPDETSEMMLSMLFNQFPGFKE 106
Query: 201 VRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
VRLVPNRHDIAFVEFENE+QS AAK AL GFKITP+HAMKISFAKK
Sbjct: 107 VRLVPNRHDIAFVEFENEVQSGAAKDALQGFKITPSHAMKISFAKK 152
>gi|30679892|ref|NP_850936.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|75329133|sp|Q8H1S6.1|RU2B2_ARATH RecName: Full=U2 small nuclear ribonucleoprotein B'' 2; Short=U2
snRNP B'' 2
gi|23296313|gb|AAN13038.1| putative spliceosomal protein (U2B) [Arabidopsis thaliana]
gi|332189937|gb|AEE28058.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 229
Score = 206 bits (525), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 113/248 (45%), Positives = 160/248 (64%), Gaps = 23/248 (9%)
Query: 3 IILAHICVTNFVYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFK 58
++ A I +Y+ HI+ +LK+SLY +FSQFG+++D+VALKT K+RGQA+V+F
Sbjct: 1 MLTADIPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFT 60
Query: 59 EIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAE 118
E+ +A+NA+R MQ FPFYDKPMRIQY+K+ SD ++K +G+F+ P + E
Sbjct: 61 EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFV---------PKEKKMKQE 111
Query: 119 AKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTN 178
K +K+ A+E QQ M + Q P P P +G PPN ILF+ N
Sbjct: 112 EKVERKRHAEE------TQQPSMPNGATTQ--NGMPVP--PFQPSGQDTMPPNNILFIHN 161
Query: 179 LPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHA 238
LP ET+ MML +LF Q+PGFKE+R++ + IAFVE+E+++QS+ A AL GFKITP +
Sbjct: 162 LPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPQNP 221
Query: 239 MKISFAKK 246
M +SFAKK
Sbjct: 222 MVVSFAKK 229
>gi|225434417|ref|XP_002271864.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' [Vitis vinifera]
gi|297745807|emb|CBI15863.3| unnamed protein product [Vitis vinifera]
Length = 234
Score = 206 bits (524), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 109/239 (45%), Positives = 153/239 (64%), Gaps = 22/239 (9%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ +++ +LK+SLY +FSQ+G+I+D+VALKT K+RGQA+V+F E+ +A+NA+R
Sbjct: 12 IYIKNLNEKVKKEELKRSLYCLFSQYGRILDVVALKTPKLRGQAWVVFSEVTAASNAVRQ 71
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
MQ FPFYDKPMR+QY+KT SD ++K GTF+ R KK K++ E
Sbjct: 72 MQNFPFYDKPMRVQYAKTKSDCVAKADGTFVPR----------------EKKKKQEEKAE 115
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGV--PEQPPNQILFLTNLPEETSEMM 187
+ R + QQ A P PP G PE PN ILF+ NLP +T+ MM
Sbjct: 116 KKRRAEEAQQSGNANGRNAETNGGPTPPFRQGNQGAREPEAAPNNILFIQNLPHQTTSMM 175
Query: 188 LSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
L +LF Q+PGF+EVR++ + IAFVEFE+++QS+ A AL GFKITP + M I++AKK
Sbjct: 176 LQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMEALQGFKITPQNPMAIAYAKK 234
>gi|15227729|ref|NP_180585.1| U2 small nuclear ribonucleoprotein B'' [Arabidopsis thaliana]
gi|75318049|sp|O22922.1|RU2B1_ARATH RecName: Full=U2 small nuclear ribonucleoprotein B''; Short=U2
snRNP B''
gi|2347192|gb|AAC16931.1| putative small nuclear ribonucleoprotein U2B [Arabidopsis thaliana]
gi|27765024|gb|AAO23633.1| At2g30260 [Arabidopsis thaliana]
gi|110743428|dbj|BAE99600.1| putative small nuclear ribonucleoprotein U2B [Arabidopsis thaliana]
gi|330253269|gb|AEC08363.1| U2 small nuclear ribonucleoprotein B'' [Arabidopsis thaliana]
Length = 232
Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 110/248 (44%), Positives = 152/248 (61%), Gaps = 20/248 (8%)
Query: 3 IILAHICVTNFVYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFK 58
++ A I +Y+ + I +LK+SLY +FSQFG+I+D+VALKT K+RGQA+V F
Sbjct: 1 MLTADIPPNQSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFS 60
Query: 59 EIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAE 118
E+ +A +A+R MQ FPFYDKPMR+QY+K SD ++K +GTF+ + KK RKQ VE E
Sbjct: 61 EVTAAGHAVRQMQNFPFYDKPMRLQYAKAKSDCLAKAEGTFVPKDKK-RKQEEKVERKRE 119
Query: 119 AKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTN 178
+ A S P + P +G PPN ILF+ N
Sbjct: 120 DSQRPNTA---------------NGPSANGPSANNGVPAPSFQPSGQETMPPNNILFIQN 164
Query: 179 LPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHA 238
LP ET+ MML +LF Q+PGFKE+R++ + IAFVE+E+++Q++ A L GFKITP +
Sbjct: 165 LPHETTSMMLQLLFEQYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQGFKITPQNP 224
Query: 239 MKISFAKK 246
M ISFAKK
Sbjct: 225 MVISFAKK 232
>gi|351722454|ref|NP_001235453.1| uncharacterized protein LOC100500002 [Glycine max]
gi|255628437|gb|ACU14563.1| unknown [Glycine max]
Length = 241
Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 113/242 (46%), Positives = 156/242 (64%), Gaps = 19/242 (7%)
Query: 11 TNFVYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNA 66
+N +Y+ +++ +LKKSL A+F+QFG+I++++A KTLK +GQA+V+F++ +SA+NA
Sbjct: 13 SNTIYINNLNEKIKIDELKKSLNAVFTQFGKILEVLAFKTLKHKGQAWVVFEDASSASNA 72
Query: 67 LRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKA 126
LR MQGFPFYDKPMRIQY+KT SD+I+K GTF+ R K+ R +D A+ +K + A
Sbjct: 73 LRQMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPREKRKRH-----DDKAKKRKDQHDA 127
Query: 127 AKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPE--QPPNQILFLTNLPEETS 184
L A A P A + VPE PPN ILF+ NLP +++
Sbjct: 128 NLAGMGLNPAYAGAYGAAPAIAYPGG--------AKSMVPEAPAPPNNILFIQNLPNDST 179
Query: 185 EMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFA 244
MML MLF Q+PGFKEVR+V + IAFVE+ +EMQS A L FKITP + M I++A
Sbjct: 180 PMMLQMLFLQYPGFKEVRMVETKPGIAFVEYGDEMQSTVAMQTLQCFKITPQNPMLITYA 239
Query: 245 KK 246
KK
Sbjct: 240 KK 241
>gi|118485733|gb|ABK94716.1| unknown [Populus trichocarpa]
Length = 254
Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 113/239 (47%), Positives = 155/239 (64%), Gaps = 16/239 (6%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ +++ +LK SL+A+FSQFG+I++I+A KTLK +GQA+VIF+++ SA+NA+R
Sbjct: 26 IYINNLNEKIKIDELKTSLHAVFSQFGKILEILAFKTLKHKGQAWVIFEDVQSASNAIRQ 85
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
MQ FPFYDKPMRIQY+KT SD+I+K GTF+ R K+ R E+ + KK + A +
Sbjct: 86 MQSFPFYDKPMRIQYAKTKSDIIAKADGTFVPREKRRRH-----EEKGKKKKDQHDANQV 140
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPE--QPPNQILFLTNLPEETSEMM 187
L A P + Q P + + VPE PPN ILF+ NLP ET+ MM
Sbjct: 141 GVGLTPA----YGGAYGTTPSLLQIPYPGGVKSM-VPEAPAPPNNILFIQNLPNETTPMM 195
Query: 188 LSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
L MLF Q+PGFKEVR+V + IAFVE+ +EMQS A L GFKI ++M I++AKK
Sbjct: 196 LQMLFQQYPGFKEVRMVEAKPGIAFVEYGDEMQSTGAMHGLQGFKILQQNSMLITYAKK 254
>gi|356573171|ref|XP_003554737.1| PREDICTED: U1 small nuclear ribonucleoprotein A-like [Glycine max]
Length = 241
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 113/246 (45%), Positives = 157/246 (63%), Gaps = 19/246 (7%)
Query: 7 HICVTNFVYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIAS 62
I N +Y+ +++ +LKKSL A+F+QFG+I++++A KTLK +GQA+V+F++ +S
Sbjct: 9 EIPQNNTIYINNLNEKIKIDELKKSLNAVFTQFGKILEVLAFKTLKHKGQAWVVFEDASS 68
Query: 63 ATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKS 122
A+NALR MQGFPFYDKPMRIQY+KT SD+I+K GTF+ R K+ R ++ A+ +K
Sbjct: 69 ASNALRQMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPREKRKRH-----DEKAKKRKD 123
Query: 123 KKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPE--QPPNQILFLTNLP 180
+ + L A A P A + VPE PPN ILF+ NLP
Sbjct: 124 QHDSNLAGMGLNPAYAGAYGAAPAIAYPGG--------AKSMVPEAPAPPNNILFIQNLP 175
Query: 181 EETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMK 240
+++ MML MLF Q+PGFKEVR+V + IAFVE+ +EMQS A L GFKITP + M
Sbjct: 176 NDSTPMMLQMLFLQYPGFKEVRMVETKPGIAFVEYGDEMQSTVAMQTLQGFKITPQNPML 235
Query: 241 ISFAKK 246
I++AKK
Sbjct: 236 ITYAKK 241
>gi|255647418|gb|ACU24174.1| unknown [Glycine max]
Length = 241
Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 113/246 (45%), Positives = 157/246 (63%), Gaps = 19/246 (7%)
Query: 7 HICVTNFVYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIAS 62
I N +Y+ +++ +LKKSL A+F+QFG+I++++A KTLK +GQA+V+F++ +S
Sbjct: 9 EIPQNNAIYINNLNEKIKIDELKKSLNAVFTQFGKILEVLAFKTLKHKGQAWVVFEDASS 68
Query: 63 ATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKS 122
A+NALR MQGFPFYDKPMRIQY+KT SD+I+K GTF+ R K+ R ++ A+ +K
Sbjct: 69 ASNALRQMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPREKRKRH-----DEKAKKRKD 123
Query: 123 KKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPE--QPPNQILFLTNLP 180
+ + L A A P A + VPE PPN ILF+ NLP
Sbjct: 124 QHDSNLAGMGLNPAYAGAYGAAPAIAYPGG--------AKSMVPEAPAPPNNILFIQNLP 175
Query: 181 EETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMK 240
+++ MML MLF Q+PGFKEVR+V + IAFVE+ +EMQS A L GFKITP + M
Sbjct: 176 NDSTPMMLQMLFLQYPGFKEVRMVETKPGIAFVEYGDEMQSTVAMQTLQGFKITPQNPML 235
Query: 241 ISFAKK 246
I++AKK
Sbjct: 236 ITYAKK 241
>gi|224128458|ref|XP_002320337.1| predicted protein [Populus trichocarpa]
gi|222861110|gb|EEE98652.1| predicted protein [Populus trichocarpa]
Length = 231
Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 113/239 (47%), Positives = 155/239 (64%), Gaps = 16/239 (6%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ +++ +LK SL+A+FSQFG+I++I+A KTLK +GQA+VIF+++ SA+NA+R
Sbjct: 3 IYINNLNEKIKIDELKTSLHAVFSQFGKILEILAFKTLKHKGQAWVIFEDVQSASNAIRQ 62
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
MQ FPFYDKPMRIQY+KT SD+I+K GTF+ R K+ R E+ + KK + A +
Sbjct: 63 MQSFPFYDKPMRIQYAKTKSDIIAKADGTFVPREKRRRH-----EEKGKKKKDQHDANQV 117
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPE--QPPNQILFLTNLPEETSEMM 187
L A P + Q P + + VPE PPN ILF+ NLP ET+ MM
Sbjct: 118 GVGLTPA----YGGAYGTTPSLLQIPYPGGVKSM-VPEAPAPPNNILFIQNLPNETTPMM 172
Query: 188 LSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
L MLF Q+PGFKEVR+V + IAFVE+ +EMQS A L GFKI ++M I++AKK
Sbjct: 173 LQMLFQQYPGFKEVRMVEAKPGIAFVEYGDEMQSTGAMHGLQGFKILQQNSMLITYAKK 231
>gi|359806644|ref|NP_001241278.1| uncharacterized protein LOC100805822 [Glycine max]
gi|255647802|gb|ACU24361.1| unknown [Glycine max]
Length = 232
Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 115/241 (47%), Positives = 157/241 (65%), Gaps = 28/241 (11%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ +I+ +LK+SLY +FSQ+G+I+D++ALKT K+RGQA+V F E+ +A+NA+R
Sbjct: 12 IYIKNINEKVKKDELKRSLYCLFSQYGRILDVIALKTPKLRGQAWVCFSEVTAASNAVRQ 71
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
MQ FPFYDKPMRIQY+KT SD I+K +GT++ P E KK +++ A+
Sbjct: 72 MQNFPFYDKPMRIQYAKTKSDCIAKEEGTYV---------------PREKKKKQEEKAER 116
Query: 130 QARLMQAQQQQM----QALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSE 185
+ R +AQQ + + S P S P TA PN ILF+ NLP ET+
Sbjct: 117 KRRAEEAQQSGVANGTHSASNGGPTASFRQGPGAQETAA-----PNNILFIENLPHETTG 171
Query: 186 MMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAK 245
ML MLF Q+PGFKEVRL+ + IAFV+FE+E+QS+ A ALHGFKITP + M I+FAK
Sbjct: 172 RMLEMLFEQYPGFKEVRLIEAKPGIAFVDFEDEVQSSMAMQALHGFKITPQNPMIITFAK 231
Query: 246 K 246
K
Sbjct: 232 K 232
>gi|169589|gb|AAA33847.1| spliceosomal protein [Solanum tuberosum]
Length = 231
Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 104/241 (43%), Positives = 150/241 (62%), Gaps = 30/241 (12%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ +++ +LK+SLY +FSQ+G+I+DIVALKT K+RGQ++V+F E+ +A+NA+R
Sbjct: 13 IYIKNLNEKVKKEELKRSLYCLFSQYGRIVDIVALKTPKLRGQSWVVFSEVTAASNAVRQ 72
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
MQ FPFYDKPMRIQY+K+ SD I+K +GT+ KKK E
Sbjct: 73 MQNFPFYDKPMRIQYAKSKSDCIAKAEGTY----------------------DKKKKQDE 110
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPE----QPPNQILFLTNLPEETSE 185
+ + ++ Q + P PA + G P PN ILF+ NLP ET+
Sbjct: 111 KVEKRKRTEETPQTGAANGPRTDSNGGPAAASRQGKPSAQDVAEPNNILFIQNLPHETTS 170
Query: 186 MMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAK 245
MML +LF Q+PGF+EVR++ + IAFVEF++++QS+ A AL GFKITP + M I++AK
Sbjct: 171 MMLEVLFKQYPGFREVRMIEAKPGIAFVEFDDDVQSSVAMQALQGFKITPQNPMAITYAK 230
Query: 246 K 246
K
Sbjct: 231 K 231
>gi|303281170|ref|XP_003059877.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226458532|gb|EEH55829.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 224
Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 103/220 (46%), Positives = 146/220 (66%), Gaps = 22/220 (10%)
Query: 27 SLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSK 86
SL+A+FSQFG+I+D+VA+KT K+RGQA+V+F+++ASAT A+R++QGFPF+DKPM++ Y+K
Sbjct: 27 SLHAVFSQFGKIIDVVAVKTYKLRGQAWVVFQDVASATAAMRAVQGFPFFDKPMKLAYAK 86
Query: 87 TDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSV 146
SD +K+ GT+ P+ DP EA+ +K A++ + + QA + + +A
Sbjct: 87 AKSDATAKLDGTY---------DPS-ARDP-EARAKRKAASQAEEKASQAAKAEAEARGG 135
Query: 147 QQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPN 206
P+ P PPN+ILF+ LPE T+ MLSMLF QFPGFKEVR+V
Sbjct: 136 GSAPIRTD-----------PSAPPNEILFVQGLPEATTAAMLSMLFQQFPGFKEVRMVEA 184
Query: 207 RHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
+ IAFVEF E Q++ A L GFKI PTH+M +S+AKK
Sbjct: 185 KPGIAFVEFTAETQASVALQGLQGFKINPTHSMTLSYAKK 224
>gi|224068352|ref|XP_002302719.1| predicted protein [Populus trichocarpa]
gi|222844445|gb|EEE81992.1| predicted protein [Populus trichocarpa]
Length = 251
Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 111/239 (46%), Positives = 155/239 (64%), Gaps = 17/239 (7%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ +++ +LKK+L+A+FSQFG+I++I+A KTLK +GQA+V+F+++ SA+NA+R
Sbjct: 24 IYINNLNEKIKIDELKKALHAVFSQFGKILEILAFKTLKHKGQAWVVFEDVQSASNAMRQ 83
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
MQ FPFYDKPMRIQY+KT SD+++K GTF+ R K+ R E K KKK +
Sbjct: 84 MQSFPFYDKPMRIQYAKTKSDIVAKADGTFVPREKRRRH---------EEKGKKKKDQHD 134
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPE--QPPNQILFLTNLPEETSEMM 187
++ PP+SQ P + VPE PPN ILF+ NLP ET+ MM
Sbjct: 135 TNQVGVGLTPAYGGAYGTTPPLSQ-IPYLGGVKSMVPEAPAPPNNILFIQNLPNETTTMM 193
Query: 188 LSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
L MLF Q+ GFKEVR+V + IAFVE+ +EMQS A AL GFK+ ++M I++AKK
Sbjct: 194 LQMLFQQYAGFKEVRMVETKPGIAFVEYGDEMQSTVAMHALQGFKLQ-QNSMLITYAKK 251
>gi|224146679|ref|XP_002326095.1| predicted protein [Populus trichocarpa]
gi|222862970|gb|EEF00477.1| predicted protein [Populus trichocarpa]
Length = 233
Score = 202 bits (514), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 111/250 (44%), Positives = 159/250 (63%), Gaps = 45/250 (18%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ +++ +LK+SLY +FSQ+G+I+D+VALKT ++RGQA+V+F E+ +A+NA+R
Sbjct: 12 IYIKNLNEKVKKEELKRSLYCLFSQYGRILDVVALKTARLRGQAWVVFSEVTAASNAVRQ 71
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDP-AEAKKSKKKAAK 128
MQGFPFYDKPMRIQY+KT SD I++ +G + DP A+ KK +++ A+
Sbjct: 72 MQGFPFYDKPMRIQYAKTKSDCIAEAEGVY---------------DPNAKKKKKQEEKAE 116
Query: 129 EQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQ------------PPNQILFL 176
+ R +AQQ S PA P + G P PPN ILF+
Sbjct: 117 RKKRAEEAQQ-------------SAPANGKPAESNGGPTSFRQGNQSAQETVPPNNILFI 163
Query: 177 TNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPT 236
NLP ET+ MML +LF Q+PGF+EVR++ + IAFVEFE+++QS+ A AL GFKITP
Sbjct: 164 QNLPHETTSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQ 223
Query: 237 HAMKISFAKK 246
+ M I++AKK
Sbjct: 224 NPMAITYAKK 233
>gi|297826425|ref|XP_002881095.1| hypothetical protein ARALYDRAFT_320780 [Arabidopsis lyrata subsp.
lyrata]
gi|297326934|gb|EFH57354.1| hypothetical protein ARALYDRAFT_320780 [Arabidopsis lyrata subsp.
lyrata]
Length = 232
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 114/248 (45%), Positives = 155/248 (62%), Gaps = 20/248 (8%)
Query: 3 IILAHICVTNFVYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFK 58
++ A I +Y+ + I +LK+SLY +FSQFG+I+D+VALKT K+RGQA+V F
Sbjct: 1 MLTADIPPNQSIYIQNLNEKIKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFS 60
Query: 59 EIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAE 118
E+ +A+NA+R MQ FPFYDKPMR+QY+K SD ++K +GTF+ + KK RKQ VE E
Sbjct: 61 EVTAASNAVRQMQNFPFYDKPMRLQYAKAKSDCLAKAEGTFVPKDKK-RKQEEKVERKRE 119
Query: 119 AKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTN 178
+ A A A PAP P +G PPN ILF+ N
Sbjct: 120 ESQRPNTANGPSANGPSANN-------------GVPAPSFP--PSGQEAMPPNNILFIQN 164
Query: 179 LPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHA 238
LP ET+ MML +LF Q+PGFKE+R++ + IAFVE+E+++Q++ A L GFKITP +
Sbjct: 165 LPHETTSMMLQLLFEQYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQGFKITPQNP 224
Query: 239 MKISFAKK 246
M ISFAKK
Sbjct: 225 MVISFAKK 232
>gi|225437410|ref|XP_002270967.1| PREDICTED: U1 small nuclear ribonucleoprotein A [Vitis vinifera]
Length = 245
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 116/242 (47%), Positives = 151/242 (62%), Gaps = 21/242 (8%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ +++ +LKKSL+A+FSQFG+IM+++A KTLK +GQA+V+F+E++SATNALR
Sbjct: 16 IYINNLNEKIKLEELKKSLFAVFSQFGKIMEVLAFKTLKHKGQAWVVFEEVSSATNALRQ 75
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
MQGFPFYDKPMRIQY+KT SDVI+K GTF+ P E + +E
Sbjct: 76 MQGFPFYDKPMRIQYAKTKSDVIAKADGTFV-----------PRERRRRHDDRAGRKRRE 124
Query: 130 QARLMQAQQQQMQALS---VQQPPVSQPAPPAPMATAGVPE--QPPNQILFLTNLPEETS 184
Q QA A PP+SQ P A + VPE PPN ILF+ NLP E +
Sbjct: 125 QHDANQAGVGVNPAYGGAYGAAPPLSQ-IPYLGGAKSAVPEAPAPPNNILFIQNLPHEAT 183
Query: 185 EMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFA 244
MML M F Q+PGFKEVR+V + IAFVE+ +EMQS A L G KI + M I++A
Sbjct: 184 PMMLQMFFCQYPGFKEVRMVEAKPGIAFVEYGDEMQSTVAMQGLQGLKINQQNPMLITYA 243
Query: 245 KK 246
KK
Sbjct: 244 KK 245
>gi|297743906|emb|CBI36876.3| unnamed protein product [Vitis vinifera]
Length = 232
Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 116/242 (47%), Positives = 151/242 (62%), Gaps = 21/242 (8%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ +++ +LKKSL+A+FSQFG+IM+++A KTLK +GQA+V+F+E++SATNALR
Sbjct: 3 IYINNLNEKIKLEELKKSLFAVFSQFGKIMEVLAFKTLKHKGQAWVVFEEVSSATNALRQ 62
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
MQGFPFYDKPMRIQY+KT SDVI+K GTF+ P E + +E
Sbjct: 63 MQGFPFYDKPMRIQYAKTKSDVIAKADGTFV-----------PRERRRRHDDRAGRKRRE 111
Query: 130 QARLMQAQQQQMQALSVQQ---PPVSQPAPPAPMATAGVPE--QPPNQILFLTNLPEETS 184
Q QA A PP+SQ P A + VPE PPN ILF+ NLP E +
Sbjct: 112 QHDANQAGVGVNPAYGGAYGAAPPLSQ-IPYLGGAKSAVPEAPAPPNNILFIQNLPHEAT 170
Query: 185 EMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFA 244
MML M F Q+PGFKEVR+V + IAFVE+ +EMQS A L G KI + M I++A
Sbjct: 171 PMMLQMFFCQYPGFKEVRMVEAKPGIAFVEYGDEMQSTVAMQGLQGLKINQQNPMLITYA 230
Query: 245 KK 246
KK
Sbjct: 231 KK 232
>gi|115462171|ref|NP_001054685.1| Os05g0154800 [Oryza sativa Japonica Group]
gi|122169518|sp|Q0DKM4.1|RU1A_ORYSJ RecName: Full=U1 small nuclear ribonucleoprotein A; Short=U1 snRNP
protein A
gi|384950745|sp|A2Y0J7.1|RU1A_ORYSI RecName: Full=U1 small nuclear ribonucleoprotein A; Short=U1 snRNP
protein A
gi|113578236|dbj|BAF16599.1| Os05g0154800 [Oryza sativa Japonica Group]
gi|125550898|gb|EAY96607.1| hypothetical protein OsI_18512 [Oryza sativa Indica Group]
gi|222630249|gb|EEE62381.1| hypothetical protein OsJ_17170 [Oryza sativa Japonica Group]
Length = 253
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 115/244 (47%), Positives = 156/244 (63%), Gaps = 26/244 (10%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ +++ +LKKSL A+FSQFG+I+D++A KTLK +GQA+V+F+++ASAT AL+S
Sbjct: 25 IYINNLNEKIKLEELKKSLRAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALKS 84
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
MQ FPF++KPMRIQY+KT SD+I+K GTF+ R ++ K++ +K K+
Sbjct: 85 MQDFPFHNKPMRIQYAKTKSDIIAKADGTFVPRERR--------------KRNDEKPEKK 130
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPP---APMATAGVPEQP----PNQILFLTNLPEE 182
Q R Q+ L V P APP P A A P PN ILF+ NLP E
Sbjct: 131 QKREQHHDVSQV-GLGVNAYPGVYGAPPLSQLPFAGAQKVMMPEIIVPNNILFVQNLPHE 189
Query: 183 TSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKIS 242
T+ MML MLF Q+PGFKEVR+V + IAFVE+ +E Q+ AA L GFKIT + M IS
Sbjct: 190 TTPMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEGQATAAMNHLQGFKITKDNQMLIS 249
Query: 243 FAKK 246
+AKK
Sbjct: 250 YAKK 253
>gi|8954049|gb|AAF82223.1|AC067971_31 Strong similarity to a small nuclear ribonucleoprotein U2B'' -
potato from Solanum tuberosum gb|M72892. It contains an
RNA recognition motif PF|00076. ESTs gb|AA041158 and
gb|AI992475 come from this gene [Arabidopsis thaliana]
Length = 247
Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 110/260 (42%), Positives = 161/260 (61%), Gaps = 29/260 (11%)
Query: 3 IILAHICVTNFVYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFK 58
++ A I +Y+ HI+ +LK+SLY +FSQFG+++D+VALKT K+RGQA+V+F
Sbjct: 1 MLTADIPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFT 60
Query: 59 EIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFM------------ERPKKV 106
E+ +A+NA+R MQ FPFYDKPMRIQY+K+ SD ++K +G+F+ ER +
Sbjct: 61 EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKRHA 120
Query: 107 RKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVP 166
+ P ++ A +R++ +Q + PP QP +G
Sbjct: 121 EETQQPSMPNGATTQNGMPVAISLSRIIPT----IQYYLLTDPPF-QP--------SGQD 167
Query: 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKL 226
PPN ILF+ NLP ET+ MML +LF Q+PGFKE+R++ + IAFVE+E+++QS+ A
Sbjct: 168 TMPPNNILFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQ 227
Query: 227 ALHGFKITPTHAMKISFAKK 246
AL GFKITP + M +SFAKK
Sbjct: 228 ALQGFKITPQNPMVVSFAKK 247
>gi|255083026|ref|XP_002504499.1| predicted protein [Micromonas sp. RCC299]
gi|226519767|gb|ACO65757.1| predicted protein [Micromonas sp. RCC299]
Length = 224
Score = 199 bits (507), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 115/245 (46%), Positives = 153/245 (62%), Gaps = 34/245 (13%)
Query: 9 CVTNFVYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASAT 64
C T +YV +++ +L KSL AIF QFG+I+DIVA K+ K+RGQA+V+F ++ASAT
Sbjct: 7 CAT--IYVNNLNEKTKKDELVKSLQAIFGQFGKIIDIVASKSYKLRGQAWVVFADVASAT 64
Query: 65 NALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKK 124
A+R+MQ FPFYDKPMRI Y+KT SD +K +GTF P+ DP ++K+
Sbjct: 65 AAMRAMQEFPFYDKPMRIAYAKTKSDATAKAEGTF---------DPS-ARDP--EMRAKR 112
Query: 125 KAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGV---PEQPPNQILFLTNLPE 181
KA QA +++ QA ++ S TA V P PPN+ILF+ LP
Sbjct: 113 KAES------QAAEKESQAAKAERDAASG-------VTAKVRTDPSAPPNEILFVQGLPG 159
Query: 182 ETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKI 241
T+ MLSMLF QFPGFKEVR+V + IAFVEFE + Q++ A L GFKI PTH+M +
Sbjct: 160 ATTAAMLSMLFQQFPGFKEVRMVEAKPGIAFVEFETDAQASVALSGLQGFKINPTHSMTL 219
Query: 242 SFAKK 246
+FA K
Sbjct: 220 AFAAK 224
>gi|224034387|gb|ACN36269.1| unknown [Zea mays]
gi|413944623|gb|AFW77272.1| hypothetical protein ZEAMMB73_456532 [Zea mays]
Length = 254
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 112/241 (46%), Positives = 153/241 (63%), Gaps = 18/241 (7%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ +++ +LKKSL A+FSQFG+I+D++A KTLK +GQA+V+F+++ASAT AL+
Sbjct: 24 IYINNLNEKIKLEELKKSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALKR 83
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
MQGFPFYDK MRIQY+KT SD+I+K GTF+ R ++ R +KS+KK +E
Sbjct: 84 MQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTD----------EKSEKKQKRE 133
Query: 130 QARLMQAQQQQMQALS---VQQPPVSQPAPPAPMATAGVPE-QPPNQILFLTNLPEETSE 185
A Q M + V P P A +PE PN ILF+ NLP ET+
Sbjct: 134 HHHDAGASQIGMGVTAYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTP 193
Query: 186 MMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAK 245
MML MLF Q+PGFKEVR++ + IAFVE+ +E Q+ AA L FKIT + M I++AK
Sbjct: 194 MMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVITYAK 253
Query: 246 K 246
K
Sbjct: 254 K 254
>gi|1050840|emb|CAA90282.1| U1snRNP-specific protein, U1A [Solanum tuberosum]
Length = 253
Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 111/238 (46%), Positives = 154/238 (64%), Gaps = 14/238 (5%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ +++ +LKKS++A+FSQFG+I++++A KTLK +GQA+V+F+E++SA+NALR
Sbjct: 25 IYINNLNEKIKLEELKKSMHAVFSQFGKILEVLAFKTLKHKGQAWVVFEEVSSASNALRQ 84
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
MQGFPFYDKPMRIQY+KT SDV++K GTF+ R K+ R E K KKK ++
Sbjct: 85 MQGFPFYDKPMRIQYAKTKSDVVAKADGTFVPREKRKRH---------EDKGRKKKDQQD 135
Query: 130 QARLMQAQQQQMQALSVQQPPVSQ-PAPPAPMATAGVPEQPPNQILFLTNLPEETSEMML 188
+ PP SQ P A PPN ILF+ NLP +++ MML
Sbjct: 136 SNQAGMGLNPAYAGAYGAAPPFSQIPYMGGAKAAVPEAPAPPNSILFVQNLPHQSTPMML 195
Query: 189 SMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
MLF Q+PGFKEVR++ + IAF+E+ +EMQS A AL GFKIT + M I++AKK
Sbjct: 196 QMLFCQYPGFKEVRMIEAKPGIAFIEYGDEMQSTVAMQALQGFKITAENPMLITYAKK 253
>gi|226498478|ref|NP_001144860.1| uncharacterized protein LOC100277950 [Zea mays]
gi|195648000|gb|ACG43468.1| hypothetical protein [Zea mays]
Length = 254
Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 112/241 (46%), Positives = 152/241 (63%), Gaps = 18/241 (7%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ +++ +LKKSL A+FSQFG+I+D++A KTLK +GQA+V+F+++ASAT AL+
Sbjct: 24 IYINNLNEKIKLEELKKSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALKR 83
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
MQGFPFYDK MRIQY+KT SD+I+K GTF+ R ++ R +KS+KK +E
Sbjct: 84 MQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTD----------EKSEKKQKRE 133
Query: 130 QARLMQAQQQQMQALS---VQQPPVSQPAPPAPMATAGVPE-QPPNQILFLTNLPEETSE 185
A Q M + V P P A +PE PN ILF+ NLP ET+
Sbjct: 134 HHHDAGASQIGMGVTAYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTP 193
Query: 186 MMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAK 245
MML MLF Q+PGFKEVR++ + IAFVE+ +E Q AA L FKIT + M I++AK
Sbjct: 194 MMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQVTAAMNNLQSFKITKENQMVITYAK 253
Query: 246 K 246
K
Sbjct: 254 K 254
>gi|384251055|gb|EIE24533.1| U1 small nuclear ribonucleo protein A [Coccomyxa subellipsoidea
C-169]
Length = 224
Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 108/246 (43%), Positives = 154/246 (62%), Gaps = 26/246 (10%)
Query: 5 LAHICVTNFVYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEI 60
+A I +YV + I DLKKS+YAIFSQFG+I+D+VALKT ++RGQA+V+F +
Sbjct: 1 MADIAPNQTIYVNNLPEKIKKEDLKKSIYAIFSQFGKILDVVALKTYRLRGQAWVVFADQ 60
Query: 61 ASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAK 120
SA +A+RSMQGFPF++KP+R+ Y+K +SD ++K+ F E+ KK R+ K
Sbjct: 61 KSADDAIRSMQGFPFFEKPIRLSYAKGESDAVAKLHNRFEEKDKKERQ-----------K 109
Query: 121 KSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLP 180
+K + K + R + QQQ + S + AP AP PP++ILF+ NLP
Sbjct: 110 HNKLERVKGRHREHRLQQQPLWCAS-----IILAAPIAP------GNAPPHKILFVQNLP 158
Query: 181 EETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMK 240
EET+ ML++LF Q+ G+ E R+V R IAFVEFE+E ++ A L GFKIT T+A
Sbjct: 159 EETTSAMLALLFQQYAGYIETRMVEARPGIAFVEFEDEDKATVAMAGLQGFKITATNAFT 218
Query: 241 ISFAKK 246
IS+A +
Sbjct: 219 ISYANR 224
>gi|255553401|ref|XP_002517742.1| small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus
communis]
gi|223543140|gb|EEF44674.1| small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus
communis]
Length = 233
Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 109/240 (45%), Positives = 155/240 (64%), Gaps = 25/240 (10%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ +++ +LK+SLY +FSQ+G+I+D+VALKT K+RGQA+V F E+ +A+NA+R
Sbjct: 12 IYIKNLNEKVKKEELKRSLYCLFSQYGRILDVVALKTPKLRGQAWVCFSEVMAASNAVRQ 71
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
MQGFPFYDKPMRIQY+KT SD + + +G + DP KK K++ E
Sbjct: 72 MQGFPFYDKPMRIQYAKTKSDCLVEAEGNY---------------DPNAKKKKKQEEKAE 116
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQ---PPNQILFLTNLPEETSEM 186
+ R +A++ Q A + V+ AP EQ PPN ILF+ NLP ET+ M
Sbjct: 117 RKR--RAEEAQQSATANGTSTVNNRG-TAPFRQGNRGEQEAAPPNNILFIQNLPHETTSM 173
Query: 187 MLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
ML +LF Q+PGF+EVR++ + IAFVEFE+++QS+ A AL FKITP + M I++AKK
Sbjct: 174 MLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQSFKITPQNPMAITYAKK 233
>gi|293333676|ref|NP_001169386.1| uncharacterized protein LOC100383254 [Zea mays]
gi|224029017|gb|ACN33584.1| unknown [Zea mays]
gi|414866361|tpg|DAA44918.1| TPA: hypothetical protein ZEAMMB73_448604 [Zea mays]
Length = 233
Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 110/237 (46%), Positives = 154/237 (64%), Gaps = 19/237 (8%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ +++ +LK+SLYA+ SQ+G+I+D+VALKT K+RGQA+V F EI +ATNA R
Sbjct: 12 IYLNNLNEKVKKEELKRSLYALCSQYGRILDVVALKTQKLRGQAWVAFSEITAATNAFRG 71
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
+Q F FY K MR+QY+KT SD I+K GT+ AP + KK ++KAA++
Sbjct: 72 LQDFDFYSKKMRVQYAKTKSDCIAKEDGTY-----------APK---EKRKKQEEKAAEK 117
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLS 189
+ R +AQQ + A + Q A A+ P PPN ILF+ NLP++T+ MML
Sbjct: 118 KRRTEEAQQAGLNAAAAQSNGTGYQASRLGKASQ-EPPAPPNNILFIQNLPDQTTSMMLQ 176
Query: 190 MLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
+LF Q+PGF+EVR++ + IAFVEFE++ QS A AL GFKITP + M IS+AKK
Sbjct: 177 ILFQQYPGFREVRMIEAKPGIAFVEFEDDGQSMVAMQALQGFKITPENPMAISYAKK 233
>gi|255564206|ref|XP_002523100.1| small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus
communis]
gi|223537662|gb|EEF39285.1| small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus
communis]
Length = 254
Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 110/240 (45%), Positives = 155/240 (64%), Gaps = 19/240 (7%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ +++ +LKKSL+A+FSQFG+I++I+A KTLK +GQA+V+F+++ SATNA+R
Sbjct: 27 IYINNLNEKIKLDELKKSLHAVFSQFGKIIEILAFKTLKHKGQAWVVFEDVQSATNAIRQ 86
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
MQ FPFYDKPMRI ++KT SDVI+K GTF+ R K+ R + + K+ K++
Sbjct: 87 MQSFPFYDKPMRIHFAKTKSDVIAKADGTFVPREKRKRHE-------EKGKRKKEQHDAN 139
Query: 130 QARLMQAQQQQMQALSVQQPPVSQ-PAPPAPMATAGVPE--QPPNQILFLTNLPEETSEM 186
QA + PP+SQ P P A + VPE PPN ILF+ NLP +T+ M
Sbjct: 140 QAGI--GMAPAYAGAYGATPPLSQIPYPGG--AKSMVPEAPAPPNNILFIQNLPNDTTTM 195
Query: 187 MLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
+L MLF + GFKEVR+V ++ IAFVE+ +EMQS A L G KI + M I++AKK
Sbjct: 196 VLQMLFQHYAGFKEVRMVESKPGIAFVEYADEMQSTVAMQGLQGLKIQ-QNPMLITYAKK 254
>gi|449439191|ref|XP_004137370.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' 2-like [Cucumis
sativus]
gi|449520549|ref|XP_004167296.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' 2-like [Cucumis
sativus]
Length = 231
Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 110/230 (47%), Positives = 150/230 (65%), Gaps = 21/230 (9%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
+ +LK+SLYA+FSQ+G+I+D+VALKT ++RGQA+V F E+ +A+NA+R MQ FPFY+K
Sbjct: 21 VKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYEK 80
Query: 79 PMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQ 138
PMRIQY+KT SD I+K G+F+ P E KK +++ A+++ R + Q
Sbjct: 81 PMRIQYAKTKSDCIAKADGSFV---------------PREKKKKQEEKAEKKRRAEETHQ 125
Query: 139 QQMQALSVQQPPVSQPA--PPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFP 196
M + + S P AT E PN ILF+ NLP ETS MML +LF Q+P
Sbjct: 126 SAMPNGTTTENGGSNATFRHANPSAT----EATPNNILFIENLPHETSSMMLQVLFQQYP 181
Query: 197 GFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
GF+EVR++ + IAFVEFE+++QS+ A AL GFKI P H M ISFAKK
Sbjct: 182 GFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231
>gi|21593001|gb|AAM64950.1| putative small nuclear ribonucleoprotein U2B [Arabidopsis thaliana]
Length = 232
Score = 196 bits (499), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 109/248 (43%), Positives = 152/248 (61%), Gaps = 20/248 (8%)
Query: 3 IILAHICVTNFVYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFK 58
++ A I + +Y+ + I +LK+SLY +FSQFG+I+D+VALKT K+RGQA+V F
Sbjct: 1 MLTADIPPNHSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFS 60
Query: 59 EIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAE 118
E+ +A +A+R MQ FP YDKPMR+QY+K SD ++K +GTF+ + KK RKQ VE E
Sbjct: 61 EVTAAGHAVRQMQNFPXYDKPMRLQYAKAKSDCLAKAEGTFVPKDKK-RKQEEKVERKRE 119
Query: 119 AKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTN 178
+ A S P + P +G PPN ILF+ N
Sbjct: 120 ESQRPNTA---------------NGPSANGPSANNGVPAPSFQPSGQETMPPNNILFIQN 164
Query: 179 LPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHA 238
LP ET+ MML +LF Q+PGFKE+R++ + IAFVE+E+++Q++ A L GFKITP +
Sbjct: 165 LPHETTSMMLQLLFEQYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQGFKITPQNP 224
Query: 239 MKISFAKK 246
M ISFAKK
Sbjct: 225 MVISFAKK 232
>gi|308457660|ref|XP_003091200.1| CRE-RNP-3 protein [Caenorhabditis remanei]
gi|308257954|gb|EFP01907.1| CRE-RNP-3 protein [Caenorhabditis remanei]
Length = 223
Score = 196 bits (499), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 102/246 (41%), Positives = 147/246 (59%), Gaps = 27/246 (10%)
Query: 5 LAHICVTNFVYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEI 60
+A I + VYV + I +LK+SL+ IF+QFG+I+ +++ + KMRGQA V+FKEI
Sbjct: 1 MADINPNHTVYVNNLNEKIKRDELKRSLHMIFTQFGEIIQLMSFRKEKMRGQAHVVFKEI 60
Query: 61 ASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAK 120
+SA+NALR++QGFPFY KPMRIQY++ DSDVI++ KGTF+E ++ V A K
Sbjct: 61 SSASNALRALQGFPFYGKPMRIQYAREDSDVIARAKGTFVE-----KRATKSVTRSAAKK 115
Query: 121 KSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLP 180
K KE + A++ + + P PN ILF +N+P
Sbjct: 116 PYDKPTGKEHKKGGDAEKVNTETTETEGPG------------------QPNNILFCSNIP 157
Query: 181 EETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMK 240
+ET + +F QFPG +EVR +PN D AF+E+E+E S +A+ AL F+ITP H +K
Sbjct: 158 DETDPEQIQTIFGQFPGLREVRWMPNTKDFAFIEYESEDHSESARQALDNFRITPNHQIK 217
Query: 241 ISFAKK 246
+ FA K
Sbjct: 218 VKFASK 223
>gi|226531516|ref|NP_001149883.1| spliceosomal protein [Zea mays]
gi|194696844|gb|ACF82506.1| unknown [Zea mays]
gi|195635261|gb|ACG37099.1| spliceosomal protein [Zea mays]
gi|195659375|gb|ACG49155.1| spliceosomal protein [Zea mays]
gi|413956009|gb|AFW88658.1| Spliceosomal protein [Zea mays]
Length = 233
Score = 196 bits (497), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 112/248 (45%), Positives = 158/248 (63%), Gaps = 19/248 (7%)
Query: 3 IILAHICVTNFVYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFK 58
++ A I +Y+ +++ +LK+SLYA+ SQ+G+I+D+VALKT K+RGQA+V+F
Sbjct: 1 MLSADIPPNQTIYLNNLNEKVKKEELKRSLYALCSQYGRILDVVALKTQKLRGQAWVVFS 60
Query: 59 EIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAE 118
EI +ATNA R +Q F FY K MR+QY+KT SD I+K GT+ AP +
Sbjct: 61 EITAATNAFRGLQDFDFYGKKMRVQYAKTKSDCIAKEDGTY-----------APK---EK 106
Query: 119 AKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTN 178
KK ++KAA+++ R +AQQ A + Q A A+ P PPN ILF+ N
Sbjct: 107 RKKQEEKAAEKKRRAEEAQQAGPNAAAAQSNGTGYQASRLGKASQ-EPPAPPNNILFIQN 165
Query: 179 LPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHA 238
LP++T+ MML +LF Q+PGF+EVR++ + IAFVEFE++ QS A AL GFKITP +
Sbjct: 166 LPDQTTSMMLQILFQQYPGFREVRMIEAKPGIAFVEFEDDGQSMVAMQALQGFKITPENP 225
Query: 239 MKISFAKK 246
M IS+AKK
Sbjct: 226 MAISYAKK 233
>gi|351726226|ref|NP_001237887.1| uncharacterized protein LOC100499914 [Glycine max]
gi|255627621|gb|ACU14155.1| unknown [Glycine max]
Length = 232
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 111/233 (47%), Positives = 152/233 (65%), Gaps = 26/233 (11%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
+ +LK+SLY +F Q+G+I+D++ALKT K+RGQA+V F E+ +A+NA+R MQ FPFYDK
Sbjct: 21 VKKDELKRSLYCLFPQYGRILDVIALKTPKLRGQAWVCFSEVTAASNAVRQMQNFPFYDK 80
Query: 79 PMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQ 138
PMRI Y+KT SD I+K +G+F+ P E KK +++ A+ + R+ +AQQ
Sbjct: 81 PMRIHYAKTKSDCIAKEEGSFV---------------PREKKKKQEEKAERKRRVEEAQQ 125
Query: 139 QQM----QALSVQQPPVS-QPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFN 193
+ + S P S + P A A A PN ILF+ NLP ET+ ML MLF
Sbjct: 126 SGVANGTHSASNGGPTASFRQGPGAQEAAA------PNNILFIENLPHETTGRMLEMLFE 179
Query: 194 QFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
Q+PGFKEV L+ + IAFV+FE+E+QS+ A ALHGFKITP + M I+FAKK
Sbjct: 180 QYPGFKEVCLIEAKPGIAFVDFEDEVQSSMAMQALHGFKITPQNPMIITFAKK 232
>gi|242086969|ref|XP_002439317.1| hypothetical protein SORBIDRAFT_09g004270 [Sorghum bicolor]
gi|241944602|gb|EES17747.1| hypothetical protein SORBIDRAFT_09g004270 [Sorghum bicolor]
Length = 259
Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 111/246 (45%), Positives = 156/246 (63%), Gaps = 30/246 (12%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ +++ +LKKSL A+FSQFG+I+D++A KTLK +GQA+V+F+++ASAT AL+
Sbjct: 31 IYINNLNEKIKLEELKKSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALKR 90
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFM--ERPKKVRKQPAPVEDPAEAKKSKKKAA 127
MQGFPFYDK MRIQY+KT SD+++K GTF+ ER K+V ++P KK K++
Sbjct: 91 MQGFPFYDKTMRIQYAKTKSDIVAKADGTFVPRERRKRVDEKP--------EKKQKREHH 142
Query: 128 KEQARLMQAQQQQMQALSVQQPPVSQPAP---PAPMATAGVPEQP----PNQILFLTNLP 180
+ +++ + V P AP P+A P PN ILF+ NLP
Sbjct: 143 HDASQI---------GMGVNAYPGVYGAPQLTQIPIAGGQRVIMPEIIVPNNILFVQNLP 193
Query: 181 EETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMK 240
ET+ MML MLF Q+PGFKEVR+V + IAFVE+ +E Q+ AA L FKIT + M
Sbjct: 194 HETTPMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEGQATAAMNNLQSFKITKENQMV 253
Query: 241 ISFAKK 246
I++AKK
Sbjct: 254 ITYAKK 259
>gi|242036017|ref|XP_002465403.1| hypothetical protein SORBIDRAFT_01g038060 [Sorghum bicolor]
gi|241919257|gb|EER92401.1| hypothetical protein SORBIDRAFT_01g038060 [Sorghum bicolor]
Length = 233
Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 108/237 (45%), Positives = 156/237 (65%), Gaps = 19/237 (8%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ +++ +LK+SLYA+ SQ+G+I+D+VALKT K+RGQA+V+F EI +ATNA R
Sbjct: 12 IYLNNLNEKVKKEELKRSLYALCSQYGRILDVVALKTQKLRGQAWVVFSEITAATNAFRG 71
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
+Q F FY K MR+QY+KT SD I+K GT+ + K+ +++ E A+++++ A
Sbjct: 72 LQDFDFYGKKMRVQYAKTKSDCIAKEDGTYAPKEKRKKQEEKAAEKKRRAEEAQQ--AGP 129
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLS 189
A Q+ QA + + VSQ PPA PPN ILF+ NLP++T+ MML
Sbjct: 130 NASAAQSNGTGYQASRLGK--VSQ-EPPA----------PPNNILFIQNLPDQTTSMMLQ 176
Query: 190 MLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
+LF Q+PGF+EVR++ + IAFVEFE++ QS A AL GFKITP + M IS+AKK
Sbjct: 177 ILFQQYPGFREVRMIEAKPGIAFVEFEDDSQSMVAMQALQGFKITPENPMAISYAKK 233
>gi|388501866|gb|AFK38999.1| unknown [Medicago truncatula]
Length = 234
Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 112/228 (49%), Positives = 148/228 (64%), Gaps = 14/228 (6%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
I +LK+SLY +FSQ+G+I+DI+ALKT K+RGQA+V F E+ +A+NA+R MQ FPFY+K
Sbjct: 21 IKKDELKRSLYCLFSQYGRILDIIALKTPKLRGQAWVCFSEVTAASNAVRQMQNFPFYEK 80
Query: 79 PMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQ 138
PMRIQY+KT SD I+K +G+F+ R +K +KQ E A +SK+ A +
Sbjct: 81 PMRIQYAKTKSDCIAKEEGSFVPR-EKKKKQEEKAEKKKYADESKQSAVPNGGTHGASNG 139
Query: 139 QQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGF 198
QA +P A A A PN ILF+ NLP ET+ ML MLF Q+PGF
Sbjct: 140 GSTQA-------SFRPGSGAQEAAA------PNNILFIENLPYETTGRMLEMLFEQYPGF 186
Query: 199 KEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
KEVRL+ + IAFV+FE++ QS+ A AL GFKITP + M I+FAKK
Sbjct: 187 KEVRLIEAKPGIAFVDFEDDGQSSMAMQALQGFKITPQNPMIINFAKK 234
>gi|357491327|ref|XP_003615951.1| U1 small nuclear ribonucleoprotein A [Medicago truncatula]
gi|355517286|gb|AES98909.1| U1 small nuclear ribonucleoprotein A [Medicago truncatula]
gi|388501104|gb|AFK38618.1| unknown [Medicago truncatula]
Length = 233
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 110/228 (48%), Positives = 147/228 (64%), Gaps = 15/228 (6%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
I +LK+SLY +FSQ+G+I+DI+ALKT K+RGQA+V F E+ +A+NA+R MQ FPFY+K
Sbjct: 21 IKKDELKRSLYCLFSQYGRILDIIALKTPKLRGQAWVCFSEVTAASNAVRQMQNFPFYEK 80
Query: 79 PMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQ 138
PMRIQY+KT SD I+K +G+F+ R +K +KQ E A +SK+ A +
Sbjct: 81 PMRIQYAKTKSDCIAKEEGSFVPR-EKKKKQEEKAEKKKYADESKQSAVPNGGTHGASNG 139
Query: 139 QQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGF 198
+ +P A A A PN ILF+ NLP ET+ ML MLF Q+PGF
Sbjct: 140 GSTASF--------RPGSGAQEAAA------PNNILFIENLPYETTGRMLEMLFEQYPGF 185
Query: 199 KEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
KEVRL+ + IAFV+FE++ QS+ A AL GFKITP + M I+FAKK
Sbjct: 186 KEVRLIEAKPGIAFVDFEDDGQSSMAMQALQGFKITPQNPMIINFAKK 233
>gi|168028479|ref|XP_001766755.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162681964|gb|EDQ68386.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 235
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 104/220 (47%), Positives = 137/220 (62%), Gaps = 13/220 (5%)
Query: 27 SLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSK 86
SLYA+FSQFG+IMDIVA KTLK+RGQA+V+F ++ +AT+ALR MQGFPFYDKPMRIQY+K
Sbjct: 29 SLYAVFSQFGKIMDIVACKTLKLRGQAWVVFDDVTAATSALRQMQGFPFYDKPMRIQYAK 88
Query: 87 TDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSV 146
T SD ISK GT++ P E + ++ ++ +EQ
Sbjct: 89 TTSDAISKANGTYV-----------PKEKRKKQEEKAERKRREQQVEAPTAPPPAAYPPP 137
Query: 147 QQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPN 206
P Q PP P+ N ILF+ NLP E + + + +LF QFPGFKEVR++
Sbjct: 138 YGVPPHQYQPPRPVVPEAPAPP--NNILFVQNLPHEATSLAIQVLFQQFPGFKEVRMIEA 195
Query: 207 RHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
+ IAFVEF +E+Q+ A LH FKITP AM++S+AKK
Sbjct: 196 KPGIAFVEFGDELQATVALQGLHNFKITPNQAMQVSYAKK 235
>gi|330842469|ref|XP_003293200.1| hypothetical protein DICPUDRAFT_83777 [Dictyostelium purpureum]
gi|325076492|gb|EGC30273.1| hypothetical protein DICPUDRAFT_83777 [Dictyostelium purpureum]
Length = 233
Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 106/240 (44%), Positives = 150/240 (62%), Gaps = 29/240 (12%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+YV + IS L++ LY++FS++GQI++I A K+LKMRGQAF++FK+I SA+NALR
Sbjct: 16 IYVNNLYEKISKKKLREHLYSLFSKYGQILEIEASKSLKMRGQAFIVFKDITSASNALRE 75
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
M GF F D+PM+IQYSK SD +SK+ GT+ME+ ++ E KK K+
Sbjct: 76 MNGFNFLDRPMKIQYSKNKSDAVSKLDGTYMEKKRQ-----------REENNEKKINIKK 124
Query: 130 QARLMQAQQQQM--QALSVQQPPVS-QPAPPAPMATAGVPEQPPNQILFLTNLPEETSEM 186
Q R + Q+ + LSV P + QP + PPN+ LF+ NLP++ M
Sbjct: 125 QDRKVTGGQKNKNGETLSVGNIPSNLQPR-----------DLPPNKTLFVENLPDKCDPM 173
Query: 187 MLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
ML MLF+QFPG+KEV +V ++ IAFVEF++E +S A +L FK+T M ISFAK+
Sbjct: 174 MLEMLFSQFPGYKEVHMVESKKGIAFVEFQDESKSGLAMQSLQHFKVTQEKPMVISFAKQ 233
>gi|17541322|ref|NP_500505.1| Protein RNP-3 [Caenorhabditis elegans]
gi|351064353|emb|CCD72714.1| Protein RNP-3 [Caenorhabditis elegans]
Length = 217
Score = 189 bits (481), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 101/247 (40%), Positives = 147/247 (59%), Gaps = 35/247 (14%)
Query: 5 LAHICVTNFVYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEI 60
+A I + +YV +++ +LK+SL+ +F+QFG+I+ +++ + KMRGQA ++FKE+
Sbjct: 1 MADINPNHTIYVNNLNEKVKKDELKRSLHMVFTQFGEIIQLMSFRKEKMRGQAHIVFKEV 60
Query: 61 ASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFME-RPKKVRKQPAPVEDPAEA 119
+SA+NALR++QGFPFY KPMRIQY++ DSDVIS+ KGTF+E R K + P E PA+
Sbjct: 61 SSASNALRALQGFPFYGKPMRIQYAREDSDVISRAKGTFVEKRQKSTKIAKKPYEKPAKN 120
Query: 120 KKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNL 179
KS ++P P T G PN ILF +N+
Sbjct: 121 GKS----------------------------AAEPTQKEPQETDG--PGLPNNILFCSNI 150
Query: 180 PEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAM 239
PE T + +F+QFPG +EVR +PN D AF+E+E+E S A+ AL F+ITPT +
Sbjct: 151 PEGTEPEQIQTIFSQFPGLREVRWMPNTKDFAFIEYESEDLSEPARQALDNFRITPTQQI 210
Query: 240 KISFAKK 246
+ FA K
Sbjct: 211 TVKFASK 217
>gi|357134589|ref|XP_003568899.1| PREDICTED: U1 small nuclear ribonucleoprotein A-like [Brachypodium
distachyon]
Length = 251
Score = 189 bits (481), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 108/241 (44%), Positives = 154/241 (63%), Gaps = 20/241 (8%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ +++ +LKKSL A+FSQFG+I++++A KTLK +GQA+V+F+++ASAT AL+
Sbjct: 23 IYINNLNEKTKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFEDVASATEALKR 82
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
MQ FPFYDKPM+IQY+KT SDV++K GTF+ R ++ R P +KK +E
Sbjct: 83 MQDFPFYDKPMKIQYAKTKSDVVAKADGTFVPRERRKRTDEKP----------EKKQKRE 132
Query: 130 QARLMQAQQQQMQAL--SVQQPPVSQ-PAPPAPMATAGVPE-QPPNQILFLTNLPEETSE 185
Q + M A + PP+SQ P P +PE PN ILF+ NLP +T+
Sbjct: 133 QHHDVSQGTLGMNAYPGAYGAPPLSQLPFGGGPKVM--MPEIIVPNNILFVQNLPHDTTP 190
Query: 186 MMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAK 245
MML MLF Q+ GFKE R++ + IAFVE+ +E Q+ AA AL FKI+ + M I++AK
Sbjct: 191 MMLQMLFCQYQGFKEARMIEAKPGIAFVEYGDEGQATAAMSALQNFKISKDNLMLITYAK 250
Query: 246 K 246
K
Sbjct: 251 K 251
>gi|357112644|ref|XP_003558118.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like
[Brachypodium distachyon]
Length = 233
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 107/242 (44%), Positives = 145/242 (59%), Gaps = 43/242 (17%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
I +LK+SLYA+ SQ+G+I+D+VALKT K+RGQA+V F EI +ATNA R +Q F FY K
Sbjct: 21 IKKEELKRSLYALCSQYGRILDVVALKTPKLRGQAWVAFSEITAATNAFRGLQDFDFYGK 80
Query: 79 PMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQ 138
MR+QY+KT SD +K G++ P E +K +++ A E+ R + Q
Sbjct: 81 RMRVQYAKTMSDCFAKADGSYA---------------PKEKRKKQEEKAAEKKRRTEDAQ 125
Query: 139 QQMQALSVQQPPVSQPAPPAPMATAGV--------------PEQPPNQILFLTNLPEETS 184
QP P AP+A + V P PPN+ILF+ NLP++T+
Sbjct: 126 --------------QPGPNAPVAPSNVTGYQASRFGKAPQEPPAPPNKILFIQNLPDQTT 171
Query: 185 EMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFA 244
MML +LF Q+PGF EVR++ + IAFVEFE+E QS A AL GFKI+P + M IS+A
Sbjct: 172 SMMLQLLFRQYPGFWEVRMIEAKPGIAFVEFEDESQSMVAMQALQGFKISPENPMAISYA 231
Query: 245 KK 246
KK
Sbjct: 232 KK 233
>gi|428182625|gb|EKX51485.1| hypothetical protein GUITHDRAFT_159319 [Guillardia theta CCMP2712]
Length = 237
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 103/228 (45%), Positives = 142/228 (62%), Gaps = 25/228 (10%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
IS L+ LY + SQFG ++D+VALKT KMRGQAFV+F+++ +A+ AL+ +QGF FY K
Sbjct: 34 ISKQVLRSELYVLCSQFGGVLDVVALKTGKMRGQAFVVFQQLTAASVALQKLQGFEFYGK 93
Query: 79 PMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQ 138
PMR + +T SDVI+K GTF+ PK+ RK + V PA + +KK+ + QA
Sbjct: 94 PMRTAFCRTKSDVIAKEDGTFV--PKQKRKTESHV--PAYKQPNKKQMVESQAEAQPEGD 149
Query: 139 QQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGF 198
Q MQ + QP N+ILFL LP+E + ML LF QFPG
Sbjct: 150 QDMQEET---------------------NQPINKILFLERLPDEINVEMLQTLFKQFPGL 188
Query: 199 KEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
EVR+VP + IAFVEFE++ Q+A A+ L GFK+TPT+ ++I++AKK
Sbjct: 189 AEVRMVPGKTGIAFVEFESDAQAATARDTLQGFKLTPTNTLRITYAKK 236
>gi|326512082|dbj|BAJ96022.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 233
Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 104/237 (43%), Positives = 146/237 (61%), Gaps = 33/237 (13%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
+ +LK+SLYA+ SQ+G+I+D+VALKT K+RGQA+V F EI +ATNA R +Q F FY K
Sbjct: 21 VKKEELKRSLYALCSQYGRIVDVVALKTHKLRGQAWVAFSEITAATNAFRGLQDFDFYGK 80
Query: 79 PMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQ 138
MR+QY+KT SD +K G++ P E +K +++ A E+ R +
Sbjct: 81 KMRVQYAKTKSDCFAKADGSYA---------------PKEKRKKQEEKAAEKKRRTE--- 122
Query: 139 QQMQALSVQQPPVSQPAPPA------PMATAGVPEQ---PPNQILFLTNLPEETSEMMLS 189
QQP + P P+ P A P++ PPN ILFL NLP++T+ +ML
Sbjct: 123 ------DGQQPGANAPVAPSNGTGHQPSRFAKPPQEPAAPPNNILFLQNLPDQTTSVMLQ 176
Query: 190 MLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
+LF Q+PGF+EVR++ + IAFVE+E+E QS A AL GFKI+P + M IS+AKK
Sbjct: 177 ILFQQYPGFREVRMIEAKPGIAFVEYEDENQSMVAMEALQGFKISPENPMAISYAKK 233
>gi|384950746|sp|B8AM21.1|RU2B_ORYSI RecName: Full=U2 small nuclear ribonucleoprotein B''; Short=U2
snRNP B''
gi|218192634|gb|EEC75061.1| hypothetical protein OsI_11177 [Oryza sativa Indica Group]
Length = 232
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 105/228 (46%), Positives = 146/228 (64%), Gaps = 16/228 (7%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
+ +LK+SLYA+ SQ+G+I+D+VALKT K+RGQA+V+F EI +ATNA R +Q F FY K
Sbjct: 21 VKKEELKRSLYALCSQYGRILDVVALKTPKLRGQAWVVFSEITAATNAFRGLQEFDFYGK 80
Query: 79 PMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQ 138
MR+QY+KT SD ++ G+ AP + KK ++KAA+++ R +AQQ
Sbjct: 81 RMRVQYAKTKSDCLATEDGS-----------TAPK---EKRKKQEEKAAEKKRRAEEAQQ 126
Query: 139 QQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGF 198
A + Q + T+ P PPN ILF+ NLP ET+ MML +LF Q+PGF
Sbjct: 127 SGPNAAAQSNGTGYQASRLG--KTSQEPPAPPNNILFIQNLPAETTSMMLQILFQQYPGF 184
Query: 199 KEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
+EVR++ + IAFVE+E++ QS A AL GFKITP + M IS+AKK
Sbjct: 185 REVRMIEAKPGIAFVEYEDDSQSMVAMQALQGFKITPYNPMAISYAKK 232
>gi|115452491|ref|NP_001049846.1| Os03g0298800 [Oryza sativa Japonica Group]
gi|122247158|sp|Q10MR0.1|RU2B_ORYSJ RecName: Full=U2 small nuclear ribonucleoprotein B''; Short=U2
snRNP B''
gi|108707669|gb|ABF95464.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|113548317|dbj|BAF11760.1| Os03g0298800 [Oryza sativa Japonica Group]
gi|215737098|dbj|BAG96027.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222624757|gb|EEE58889.1| hypothetical protein OsJ_10509 [Oryza sativa Japonica Group]
Length = 232
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 105/228 (46%), Positives = 146/228 (64%), Gaps = 16/228 (7%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
+ +LK+SLYA+ SQ+G+I+D+VALKT K+RGQA+V+F EI +ATNA R +Q F FY K
Sbjct: 21 VKKEELKRSLYALCSQYGRILDVVALKTPKLRGQAWVVFSEITAATNAFRGLQEFDFYGK 80
Query: 79 PMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQ 138
MR+QY+KT SD ++ G+ AP + KK ++KAA+++ R +AQQ
Sbjct: 81 RMRVQYAKTRSDCLATEDGS-----------TAPK---EKRKKQEEKAAEKKRRAEEAQQ 126
Query: 139 QQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGF 198
A + Q + T+ P PPN ILF+ NLP ET+ MML +LF Q+PGF
Sbjct: 127 SGPNAAAQSNGTGYQASRLG--KTSQEPPAPPNNILFIQNLPAETTSMMLQILFQQYPGF 184
Query: 199 KEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
+EVR++ + IAFVE+E++ QS A AL GFKITP + M IS+AKK
Sbjct: 185 REVRMIEAKPGIAFVEYEDDSQSMVAMQALQGFKITPYNPMAISYAKK 232
>gi|326507414|dbj|BAK03100.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326528465|dbj|BAJ93414.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 249
Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 107/241 (44%), Positives = 152/241 (63%), Gaps = 21/241 (8%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ +++ LKKSL A+FSQFG+I++++A KTLK +GQA+V+F+++ASAT AL+
Sbjct: 22 IYINNLNEKIKLDALKKSLNAVFSQFGKIIEVLAFKTLKHKGQAWVVFEDVASATEALKR 81
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
MQ FPFYDKPM+IQY+KT SDV++K GTF+ R K+ R P +KK +E
Sbjct: 82 MQDFPFYDKPMKIQYAKTKSDVVAKADGTFVPREKRKRNDEKP----------EKKQKRE 131
Query: 130 QARLMQAQQQQMQAL--SVQQPPVSQ-PAPPAPMATAGVPE-QPPNQILFLTNLPEETSE 185
Q + M A + PP+SQ P P +PE PN ILF+ LP + +
Sbjct: 132 QHHDVNQAGVGMHAYPGAYGAPPLSQLPFGAGPKVM--MPEIIVPNNILFVQELPHDATA 189
Query: 186 MMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAK 245
+ML M F Q+PGFKEVR++ + IAFVE+ +E Q+ AA L GFKI + M+I++AK
Sbjct: 190 LMLQMFFCQYPGFKEVRMIEAKPGIAFVEYGDEGQATAAMNLLQGFKIK-ENPMRITYAK 248
Query: 246 K 246
K
Sbjct: 249 K 249
>gi|145323766|ref|NP_001077472.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332189939|gb|AEE28060.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 200
Score = 184 bits (466), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 100/213 (46%), Positives = 140/213 (65%), Gaps = 19/213 (8%)
Query: 34 QFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVIS 93
+FG+++D+VALKT K+RGQA+V+F E+ +A+NA+R MQ FPFYDKPMRIQY+K+ SD ++
Sbjct: 7 KFGRLLDVVALKTPKLRGQAWVVFTEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDYVT 66
Query: 94 KIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQ 153
K +G+F+ P + E K +K+ A+E QQ M + Q
Sbjct: 67 KAEGSFV---------PKEKKMKQEEKVERKRHAEE------TQQPSMPNGATTQ--NGM 109
Query: 154 PAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFV 213
P PP +G PPN ILF+ NLP ET+ MML +LF Q+PGFKE+R++ + IAFV
Sbjct: 110 PVPP--FQPSGQDTMPPNNILFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFV 167
Query: 214 EFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
E+E+++QS+ A AL GFKITP + M +SFAKK
Sbjct: 168 EYEDDVQSSMAMQALQGFKITPQNPMVVSFAKK 200
>gi|307110924|gb|EFN59159.1| hypothetical protein CHLNCDRAFT_50008 [Chlorella variabilis]
Length = 236
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 110/237 (46%), Positives = 144/237 (60%), Gaps = 29/237 (12%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
VYV + +S DLKK+++ IF QFG+I+D+V+ +T ++RGQA+V+F++ A NAL
Sbjct: 24 VYVNNLPEKVSQDDLKKAMHCIFGQFGKILDVVSRRTYRLRGQAWVVFEKAEDAKNALDC 83
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
MQGFPF DKP+RI +KT SD ISK GTF ERPK VE ++ K KAA E
Sbjct: 84 MQGFPFLDKPLRIALAKTKSDAISKQDGTFRERPK--------VE-----RQVKSKAAAE 130
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLS 189
A QQ+ +A P + A A A AG P + PN ILF+ NLP +E M+
Sbjct: 131 ------ALQQRAKA-----KPDAAAAAAAAAAAAGQP-RGPNHILFVENLPGTANEAMVG 178
Query: 190 MLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
MLF QF GFKEVR+VP + IAFVE+ +E Q+ A L GFK+ M ISFA +
Sbjct: 179 MLFQQFTGFKEVRMVPAKPGIAFVEYSDEGQAGVAMQGLQGFKLATDKPMAISFANR 235
>gi|108707670|gb|ABF95465.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
Length = 231
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 102/228 (44%), Positives = 144/228 (63%), Gaps = 17/228 (7%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
+ +LK+SLYA+ SQ+G+I+D+VALKT K+RGQA+V+F EI +ATNA R +Q F FY K
Sbjct: 21 VKKEELKRSLYALCSQYGRILDVVALKTPKLRGQAWVVFSEITAATNAFRGLQEFDFYGK 80
Query: 79 PMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQ 138
MR+QY+KT SD ++ G+ P E +K +++ A+++ R +AQQ
Sbjct: 81 RMRVQYAKTRSDCLATEDGS---------------TAPKEKRKKQEEKAEKKRRAEEAQQ 125
Query: 139 QQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGF 198
A + Q + T+ P PPN ILF+ NLP ET+ MML +LF Q+PGF
Sbjct: 126 SGPNAAAQSNGTGYQASRLG--KTSQEPPAPPNNILFIQNLPAETTSMMLQILFQQYPGF 183
Query: 199 KEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
+EVR++ + IAFVE+E++ QS A AL GFKITP + M IS+AKK
Sbjct: 184 REVRMIEAKPGIAFVEYEDDSQSMVAMQALQGFKITPYNPMAISYAKK 231
>gi|452823467|gb|EME30477.1| U2 small nuclear ribonucleoprotein B'' [Galdieria sulphuraria]
Length = 250
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 95/224 (42%), Positives = 134/224 (59%), Gaps = 28/224 (12%)
Query: 23 DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRI 82
+L++SLY FSQFG+I+D+VALKT +MRGQAF+ F++IASATNALR +QGF FY+KPM I
Sbjct: 55 ELRQSLYEAFSQFGRIVDVVALKTTRMRGQAFIAFEDIASATNALRGLQGFLFYNKPMVI 114
Query: 83 QYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQ 142
QY+K S+ ++K+ GTF+ R ++ Q A VE +++ K K+
Sbjct: 115 QYAKAKSEKVAKLDGTFVRRSERKPDQDASVEPKSDSLKRKR------------------ 156
Query: 143 ALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVR 202
S P + T V E PN +LF+ +P++ S L LF QFPG+KE R
Sbjct: 157 --------TSTPVLSKDLDTLQVGE--PNHVLFIAGIPQDCSLQQLESLFVQFPGYKETR 206
Query: 203 LVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
L + +AFVEFE E Q+ A + GF+I+ T + I +AKK
Sbjct: 207 LAAGQERVAFVEFETEDQATVALQGMQGFRISETSQLSIVYAKK 250
>gi|242023616|ref|XP_002432228.1| U2 small nuclear ribonucleoprotein B'', putative [Pediculus humanus
corporis]
gi|212517625|gb|EEB19490.1| U2 small nuclear ribonucleoprotein B'', putative [Pediculus humanus
corporis]
Length = 190
Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 107/170 (62%), Positives = 119/170 (70%), Gaps = 7/170 (4%)
Query: 27 SLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSK 86
SLYAIFSQFGQI+DIVALKTL+M+GQAFVIFKEI SAT AL SMQGFPFYDKPMRIQY K
Sbjct: 26 SLYAIFSQFGQILDIVALKTLRMKGQAFVIFKEINSATKALMSMQGFPFYDKPMRIQYCK 85
Query: 87 TDSDVISKIKGTFMERPKKVRKQP--APVEDPAEAKKSKKKAAKEQARLMQAQQQQMQAL 144
TDSD+I+K+KGT+ ERPKK +K A EDP + K K + M A
Sbjct: 86 TDSDIIAKMKGTYSERPKKPKKPAPVAREEDPEKKKAKKNANKIDGRLGMGFDGLHGMAQ 145
Query: 145 SVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQ 194
+S P VPEQPPNQILFLTNLP+ETSEMMLSMLFNQ
Sbjct: 146 YNAAAMLSNLQGVGP-----VPEQPPNQILFLTNLPDETSEMMLSMLFNQ 190
>gi|323450983|gb|EGB06862.1| hypothetical protein AURANDRAFT_28680 [Aureococcus anophagefferens]
Length = 214
Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 93/237 (39%), Positives = 141/237 (59%), Gaps = 36/237 (15%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
VY+ + I LKKS+Y++FSQFG+I+D+V + LK+RGQA+V+F ++ +ATNALR
Sbjct: 10 VYINNLNEKIKKDALKKSIYSVFSQFGKILDVVCCRGLKLRGQAWVVFADVGAATNALRQ 69
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
MQGFPF+DKPMRI ++K SDV+SK G+F+ R K+ ++ +
Sbjct: 70 MQGFPFFDKPMRIAFAKAKSDVVSKADGSFVARE----------------KRKREAPPPK 113
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLS 189
+A + A + + + P+ +LF +LP++ ++MMLS
Sbjct: 114 APPATEALEAPKPAKAAKADKNATPS----------------NVLFAQDLPDDCNDMMLS 157
Query: 190 MLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
+LF Q+ GFKEVR+VP + IAFVEF +E Q++ A L FK+TPT + +SFAK+
Sbjct: 158 ILFQQYGGFKEVRMVPGKKGIAFVEFADETQASLALQGLDNFKLTPTDTLALSFAKR 214
>gi|256083951|ref|XP_002578198.1| small nuclear ribonucleoprotein U)1aU)2b [Schistosoma mansoni]
gi|353232717|emb|CCD80072.1| putative small nuclear ribonucleoprotein U)1a,U)2b [Schistosoma
mansoni]
Length = 226
Score = 179 bits (455), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 99/237 (41%), Positives = 147/237 (62%), Gaps = 23/237 (9%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+YV +++ DLKK+LY IF Q G+++DI+A+KT+KMRGQAF+I+++IA AT A RS
Sbjct: 9 LYVNNLNDKVKKNDLKKALYYIFGQHGRLIDIIAMKTMKMRGQAFIIYQDIACATQAYRS 68
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
+QGF + +PMR+ Y+K DS I +KG V + ++ +++ +
Sbjct: 69 LQGFQLFQRPMRVTYAKKDSQQIICLKG---------------VSAEVQKRREEEREKRR 113
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLS 189
+ ++ Q AL V+ PA A + + PN ILF++NLPEET++ ML+
Sbjct: 114 RKKMAQRAAAAAAALQAANQSVNGPAGTGGDINALLDQ--PNHILFVSNLPEETTDAMLT 171
Query: 190 MLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
MLF+QF GFKE R + FVE++ E Q+AAA+ A GFK+TPTHAM+I+FAKK
Sbjct: 172 MLFSQFSGFKEARRAAG--GVGFVEYDTESQAAAARSAYEGFKLTPTHAMQITFAKK 226
>gi|297824861|ref|XP_002880313.1| hypothetical protein ARALYDRAFT_483938 [Arabidopsis lyrata subsp.
lyrata]
gi|297326152|gb|EFH56572.1| hypothetical protein ARALYDRAFT_483938 [Arabidopsis lyrata subsp.
lyrata]
Length = 249
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 107/239 (44%), Positives = 147/239 (61%), Gaps = 15/239 (6%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ +++ +LKKSL A+FSQFG+I++I+A KTLK +GQA+V+F SA+ A+
Sbjct: 20 IYINNLNEKVKIDELKKSLNAVFSQFGKILEILAFKTLKHKGQAWVVFDNADSASTAIAK 79
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
M FPFYDK MRIQY+KT SDV++K GTF+ R K+ R + + K KK +
Sbjct: 80 MNDFPFYDKNMRIQYAKTKSDVVAKADGTFVPREKRKRHE-------EKGGKKKKDHHHD 132
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPE--QPPNQILFLTNLPEETSEMM 187
++ A + PP+SQ P + +PE PPN ILF+ NLP ET+ M+
Sbjct: 133 STQMGMATNSAYPGVYGAAPPLSQVPYPGGV-KPNLPEAPAPPNNILFVQNLPHETTPMV 191
Query: 188 LSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
L MLF Q+ GFKEVR+V + IAFVEF +EMQS A L GFKI + M I++AKK
Sbjct: 192 LQMLFYQYQGFKEVRMVEAKPGIAFVEFADEMQSTVAMQGLQGFKIQ-QNQMLITYAKK 249
>gi|56756134|gb|AAW26245.1| SJCHGC05726 protein [Schistosoma japonicum]
Length = 226
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 99/237 (41%), Positives = 148/237 (62%), Gaps = 23/237 (9%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+YV +++ DLKK+LY IF Q G+++DI+A+KT+KMRGQAF+I+++IA AT A RS
Sbjct: 9 LYVNNLNDKVKKNDLKKALYYIFGQHGRLIDIIAMKTMKMRGQAFIIYQDIACATQAYRS 68
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
+QGF + +PMR+ Y+K DS I +KG V + ++ +++ ++
Sbjct: 69 LQGFQLFQRPMRVTYAKKDSLQIISLKG---------------VSAEVQKRREEEREKRK 113
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLS 189
+ ++ Q AL V+ PA A + + PN ILF++NLPEET++ ML+
Sbjct: 114 RKKMAQRAAAAAAALQAANQSVNGPAGTGGDINALLDQ--PNHILFVSNLPEETTDAMLT 171
Query: 190 MLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
MLF+QF GFKE R + FVE++ E Q+AAA+ A GFK+TPTHAM+I+FAKK
Sbjct: 172 MLFSQFSGFKEARRAAG--GVGFVEYDTESQAAAARSAYEGFKLTPTHAMQITFAKK 226
>gi|15226631|ref|NP_182280.1| spliceosomal protein U1A [Arabidopsis thaliana]
gi|75319458|sp|Q39244.1|RU1A_ARATH RecName: Full=U1 small nuclear ribonucleoprotein A; Short=U1 snRNP
protein A
gi|1050430|emb|CAA90283.1| U1snRNP-specific protein [Arabidopsis thaliana]
gi|2529669|gb|AAC62852.1| small nuclear ribonucleoprotein U1A [Arabidopsis thaliana]
gi|15450591|gb|AAK96567.1| At2g47580/T30B22.12 [Arabidopsis thaliana]
gi|16649011|gb|AAL24357.1| small nuclear ribonucleoprotein U1A [Arabidopsis thaliana]
gi|20259986|gb|AAM13340.1| small nuclear ribonucleoprotein U1A [Arabidopsis thaliana]
gi|22655484|gb|AAM98334.1| At2g47580/T30B22.12 [Arabidopsis thaliana]
gi|330255767|gb|AEC10861.1| spliceosomal protein U1A [Arabidopsis thaliana]
Length = 250
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 105/239 (43%), Positives = 144/239 (60%), Gaps = 14/239 (5%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ +++ +LKKSL A+FSQFG+I++I+A KT K +GQA+V+F SA+ A+
Sbjct: 20 IYINNLNEKVKLDELKKSLNAVFSQFGKILEILAFKTFKHKGQAWVVFDNTESASTAIAK 79
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
M FPFYDK MRIQY+KT SDV++K GTF+ R K+ R + K KK +
Sbjct: 80 MNNFPFYDKEMRIQYAKTKSDVVAKADGTFVPREKRKR------HEEKGGGKKKKDQHHD 133
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPE--QPPNQILFLTNLPEETSEMM 187
++ + PP+SQ P M +PE PPN ILF+ NLP ET+ M+
Sbjct: 134 STQMGMPMNSAYPGVYGAAPPLSQVPYPGGM-KPNMPEAPAPPNNILFVQNLPHETTPMV 192
Query: 188 LSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
L MLF Q+ GFKEVR++ + IAFVEF +EMQS A L GFKI + M I++AKK
Sbjct: 193 LQMLFCQYQGFKEVRMIEAKPGIAFVEFADEMQSTVAMQGLQGFKIQ-QNQMLITYAKK 250
>gi|268553735|ref|XP_002634854.1| C. briggsae CBR-RNP-3 protein [Caenorhabditis briggsae]
Length = 220
Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 94/248 (37%), Positives = 148/248 (59%), Gaps = 34/248 (13%)
Query: 5 LAHICVTNFVYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEI 60
+A I + +YV +++ +LK+SL+ IF+Q+G+I+ +++ + +MRGQA ++FKE+
Sbjct: 1 MADINPNHTIYVNNLNEKVKRDELKRSLHMIFAQYGEIIQLMSFRKERMRGQAHIVFKEV 60
Query: 61 ASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPA--PVEDPAE 118
+SA+NALR++QGFPFY KPMRIQY++ DSDVI++ KG+++E+ K + A P E P
Sbjct: 61 SSASNALRALQGFPFYGKPMRIQYAREDSDVIARAKGSYVEKRAKTTARAAKKPYEKPKN 120
Query: 119 AKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTN 178
+K + KE+ + + + PN ILF +N
Sbjct: 121 GEKRPEGEEKEKETTAENEGPGL----------------------------PNNILFCSN 152
Query: 179 LPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHA 238
+P+ T + +F QFPG +EVR +PN D AFVE+E+E S A+ AL F+ITP+H
Sbjct: 153 IPDGTDPDQIQHIFGQFPGLREVRWMPNTKDFAFVEYESEDMSEPARQALDNFRITPSHQ 212
Query: 239 MKISFAKK 246
+K+ FA K
Sbjct: 213 IKVKFATK 220
>gi|66806007|ref|XP_636725.1| U2 small nuclear ribonucleoprotein B [Dictyostelium discoideum AX4]
gi|74996697|sp|Q54J05.1|RU2B_DICDI RecName: Full=U2 small nuclear ribonucleoprotein B''; Short=U2
snRNP B''
gi|60465122|gb|EAL63221.1| U2 small nuclear ribonucleoprotein B [Dictyostelium discoideum AX4]
Length = 241
Score = 176 bits (446), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 101/235 (42%), Positives = 147/235 (62%), Gaps = 13/235 (5%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+YV + IS L + L +FS++G I++IV K+LKMRGQAF++FK+I SA+NALR
Sbjct: 14 LYVNNLYEKISKKKLIEQLLLLFSKYGPILEIVGSKSLKMRGQAFIVFKDITSASNALRE 73
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
M GF F D+PM+IQY K+ SD +SK+ GT+ME+ K+ R++ + K S KK ++
Sbjct: 74 MNGFNFLDRPMKIQYCKSKSDAVSKLDGTYMEK-KREREE-------NDKKGSNKKQDRK 125
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLS 189
Q QQ++ A + S ++ + PPN+ LF+ NLP++ MMLS
Sbjct: 126 STGQQQQQQKRPGAPTSTTSTTSPTTSNGTVSLQ-PRDDPPNKTLFVENLPDKCDSMMLS 184
Query: 190 MLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFA 244
MLF+QF GFKEV +V ++ IAF+EFE+E++S A L FK+TP M +SFA
Sbjct: 185 MLFSQFQGFKEVHMVESKKGIAFIEFEDEIKSGFAMTNLQHFKVTPEKPMVVSFA 239
>gi|341897441|gb|EGT53376.1| CBN-RNP-2 protein [Caenorhabditis brenneri]
Length = 206
Score = 176 bits (446), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 92/251 (36%), Positives = 148/251 (58%), Gaps = 54/251 (21%)
Query: 5 LAHICVTNFVYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEI 60
+A + + +Y+ +++ +L+KSL A+F QFG+I+ ++ +TL+MRGQA VIF +I
Sbjct: 1 MAELAPNSTLYINNLNEKIKIEELRKSLIAVFKQFGEIVSVMCFRTLRMRGQAHVIFTDI 60
Query: 61 ASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMER-PK----KVRKQPAPVED 115
++A+ A ++ GFPFY+KPM+IQ+++ D+D+I+K KGT+M+R PK K++K+P
Sbjct: 61 SAASAAKEALTGFPFYEKPMKIQFAREDADIIAKQKGTYMDRQPKYLSEKIQKKP----- 115
Query: 116 PAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILF 175
+SKK+ G PPN+ILF
Sbjct: 116 -----RSKKRE-----------------------------------NGGEGPAPPNKILF 135
Query: 176 LTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITP 235
TNLP+ + ML ++FNQFPG K++R+VPNR IAFVEF+ + + A+ L+ F+I+
Sbjct: 136 CTNLPDNATAEMLEIMFNQFPGLKDIRMVPNRPGIAFVEFDTDSLAIPARTTLNNFRISA 195
Query: 236 THAMKISFAKK 246
H M++ +AKK
Sbjct: 196 EHVMRVDYAKK 206
>gi|17541324|ref|NP_500504.1| Protein RNP-2 [Caenorhabditis elegans]
gi|351064354|emb|CCD72715.1| Protein RNP-2 [Caenorhabditis elegans]
Length = 206
Score = 176 bits (446), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 95/251 (37%), Positives = 146/251 (58%), Gaps = 54/251 (21%)
Query: 5 LAHICVTNFVYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEI 60
+A + + +Y+ +++ +L+KSL A+F QFG+I+ ++ +TLKMRGQA VIFKE+
Sbjct: 1 MAEVAPNSTLYINNLNEKIKIDELRKSLVAVFKQFGEIVSVMCFRTLKMRGQAHVIFKEL 60
Query: 61 ASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMER-PK----KVRKQPAPVED 115
+A+ A ++ GFPFY+KPMRIQ+++ DSDV+++ KGT+++R PK K+ K+P
Sbjct: 61 PAASAAREALNGFPFYEKPMRIQFAREDSDVVAQEKGTYIKREPKYLSEKILKKP----- 115
Query: 116 PAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILF 175
KS+KK G PPN+ILF
Sbjct: 116 -----KSRKKE-----------------------------------NGGDGPAPPNKILF 135
Query: 176 LTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITP 235
TNLP+ + ML ++FNQF G K++R+VPNR IAFVEF+ + + A+ L+ FKI+
Sbjct: 136 CTNLPDSATAEMLEIMFNQFAGLKDIRMVPNRPGIAFVEFDTDSLAIPARTTLNNFKISA 195
Query: 236 THAMKISFAKK 246
H M++ +AKK
Sbjct: 196 EHTMRVDYAKK 206
>gi|302816013|ref|XP_002989686.1| hypothetical protein SELMODRAFT_184747 [Selaginella moellendorffii]
gi|300142463|gb|EFJ09163.1| hypothetical protein SELMODRAFT_184747 [Selaginella moellendorffii]
Length = 228
Score = 174 bits (440), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 103/247 (41%), Positives = 148/247 (59%), Gaps = 25/247 (10%)
Query: 5 LAHICVTNFVYVTHISST----DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEI 60
+A I +Y+ +++S ++K++L+A+FS +G+I+D+V KT K+RGQA+V+F EI
Sbjct: 1 MADILPNETIYIKNLNSKVKKQEMKRALHALFSAYGRILDVVVCKTPKLRGQAWVVFNEI 60
Query: 61 ASATNALRSMQGFPFYDKPMRIQYSKTDSD-VISKIKGTFMERPKKVRKQPAPVEDPAEA 119
+AT+ALR M+ F +D+PM IQY+K+ SD +IS ++ PK+ R++ ED
Sbjct: 61 PAATSALRHMKEFQLFDRPMVIQYAKSKSDAIISLTDDSYA--PKEKRRK---TEDKGVD 115
Query: 120 KKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNL 179
KK K + EQ + A PPV +P Q PN ILF+ NL
Sbjct: 116 KKRKDQ---EQPQANGATPAHGHVYGAAPPPV-KPG-----------TQEPNSILFIQNL 160
Query: 180 PEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAM 239
P+ETS ML MLF ++PG K+VR+V R IAFVE+ +E Q+ A AL FKIT HAM
Sbjct: 161 PDETSGPMLEMLFTRYPGLKDVRMVDGRPGIAFVEYSDEGQATVALEALQSFKITANHAM 220
Query: 240 KISFAKK 246
IS+AKK
Sbjct: 221 VISYAKK 227
>gi|302820252|ref|XP_002991794.1| hypothetical protein SELMODRAFT_236385 [Selaginella moellendorffii]
gi|300140475|gb|EFJ07198.1| hypothetical protein SELMODRAFT_236385 [Selaginella moellendorffii]
Length = 228
Score = 173 bits (439), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 102/247 (41%), Positives = 148/247 (59%), Gaps = 25/247 (10%)
Query: 5 LAHICVTNFVYVTHISST----DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEI 60
+A I +Y+ +++S ++K++L+A+FS +G+I+D+V KT K+RGQA+V+F EI
Sbjct: 1 MADILPNETIYIKNLNSKVKKQEMKRALHALFSAYGRILDVVVCKTPKLRGQAWVVFNEI 60
Query: 61 ASATNALRSMQGFPFYDKPMRIQYSKTDSD-VISKIKGTFMERPKKVRKQPAPVEDPAEA 119
+AT+ALR M+ F +D+PM IQY+K+ SD +IS ++ PK+ R++ ED
Sbjct: 61 PAATSALRHMKEFQLFDRPMVIQYAKSKSDAIISLTDDSYA--PKEKRRK---TEDKGVD 115
Query: 120 KKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNL 179
KK K + EQ + A PPV +P Q PN ILF+ NL
Sbjct: 116 KKRKDQ---EQPQANGATPAHSHVYGAAPPPV-KPG-----------NQEPNSILFIQNL 160
Query: 180 PEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAM 239
P+ET+ ML MLF ++PG K+VR+V R IAFVE+ +E Q+ A AL FKIT HAM
Sbjct: 161 PDETTGPMLEMLFTRYPGLKDVRMVDGRPGIAFVEYSDEGQATVALEALQSFKITANHAM 220
Query: 240 KISFAKK 246
IS+AKK
Sbjct: 221 VISYAKK 227
>gi|268553733|ref|XP_002634853.1| C. briggsae CBR-RNP-2 protein [Caenorhabditis briggsae]
Length = 206
Score = 173 bits (439), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 89/237 (37%), Positives = 138/237 (58%), Gaps = 44/237 (18%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ +++ +L+KSL+A+F QFG+I+D++ +TLKMRGQA +IF EI AT A +
Sbjct: 10 LYINNLNEKIKIDELRKSLFAVFKQFGEILDVMCFRTLKMRGQAHIIFAEIPHATAAKEA 69
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
+ GFPFY+KPM+IQ+++ D+D I+K KGT++ER
Sbjct: 70 LSGFPFYEKPMKIQFAREDADRIAKEKGTYVER--------------------------- 102
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLS 189
+ + M + Q+ + PA PPN+ILF TNLP+ + ML
Sbjct: 103 KPKYMSEKVQKKPKSKKRDAGGEGPA-------------PPNKILFCTNLPDSATAEMLE 149
Query: 190 MLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
++FNQFPG K++R+VPNR IAFVEF+ + + A+ L+ F+I+ H M++ +AKK
Sbjct: 150 IMFNQFPGLKDIRMVPNRPGIAFVEFDTDSLAIPARTTLNNFRISAEHVMRVDYAKK 206
>gi|302769730|ref|XP_002968284.1| hypothetical protein SELMODRAFT_409510 [Selaginella moellendorffii]
gi|302788648|ref|XP_002976093.1| hypothetical protein SELMODRAFT_175284 [Selaginella moellendorffii]
gi|300156369|gb|EFJ22998.1| hypothetical protein SELMODRAFT_175284 [Selaginella moellendorffii]
gi|300163928|gb|EFJ30538.1| hypothetical protein SELMODRAFT_409510 [Selaginella moellendorffii]
Length = 235
Score = 173 bits (438), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 99/229 (43%), Positives = 142/229 (62%), Gaps = 34/229 (14%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
I +L KSL A+FSQFG I+DIVA K+LK++GQA+V+F+++ +ATNALR MQ FPFYDK
Sbjct: 40 IKKDELVKSLRAVFSQFGNILDIVACKSLKLKGQAWVVFEDVTAATNALRQMQEFPFYDK 99
Query: 79 PMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQ 138
+RIQY+KT SD ++K+ GTF+ PK+ RK+ +++ AE +K +
Sbjct: 100 ALRIQYAKTKSDAVAKLDGTFI--PKEKRKK---IDEKAEKRK----------------R 138
Query: 139 QQMQALSVQQPPVSQPAPPAPMATAGVPEQP-PNQILFLTNLPEETSEMMLSMLFNQFPG 197
+ ++ S P M T+ VPE PN ILF+ LP +TS L MLF+ PG
Sbjct: 139 EHHESHSYHYP----------MRTS-VPEIALPNNILFVQKLPHDTSSAQLQMLFSSIPG 187
Query: 198 FKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
FKEVR+V + IAFVE+ Q++ AK H F++ + M I++AK+
Sbjct: 188 FKEVRMVDAKPGIAFVEYAEVDQASVAKSTFHAFRVNES-PMHITYAKR 235
>gi|328869164|gb|EGG17542.1| U2 small nuclear ribonucleoprotein B [Dictyostelium fasciculatum]
Length = 241
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 90/235 (38%), Positives = 140/235 (59%), Gaps = 28/235 (11%)
Query: 14 VYVTHI----SSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+YV +I S LK+ LY +FS++G I++I++ K KM+GQAF++F++I +A+NALR
Sbjct: 29 IYVNNINEKLSQKKLKEQLYGLFSKYGTILEIISSKRQKMKGQAFIVFQDITAASNALRE 88
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
M GF F+D+ + +QYSK SD +SK+ GT++E+ ++ E ++ K+KA K+
Sbjct: 89 MNGFSFFDRNINVQYSKNKSDAVSKLDGTYVEKKRE-----------RETEQEKRKAKKQ 137
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLS 189
+ + + P AP E PPN+ILF+ NLP+ EMM+
Sbjct: 138 D----NKKSTKQSKTTSTSTPSGNVAP---------REAPPNRILFVENLPDNCQEMMIQ 184
Query: 190 MLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFA 244
MLF+QFPGF+ V + R +AFVE++++++S A L GFK+T M ISFA
Sbjct: 185 MLFSQFPGFQSVNMTTARKGVAFVEYDDDIKSGLAMSHLQGFKVTSDRPMVISFA 239
>gi|441653781|ref|XP_003270568.2| PREDICTED: U1 small nuclear ribonucleoprotein A [Nomascus
leucogenys]
Length = 211
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 111/237 (46%), Positives = 132/237 (55%), Gaps = 65/237 (27%)
Query: 49 MRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRK 108
MRGQAFVIFKE RIQY+KTDSD+I+K+KGTF+ER +K K
Sbjct: 1 MRGQAFVIFKE---------------------RIQYAKTDSDIIAKMKGTFVERDRKREK 39
Query: 109 Q-PAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALS---------------------- 145
+ P E PA K + A +Q M ++
Sbjct: 40 RKPKSQETPATKKAVQGGGAAPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMI 99
Query: 146 -------VQQPPVSQPA--------PPA-PMATAGVPEQPPNQILFLTNLPEETSEMMLS 189
Q PP + P PPA P++ E PPN ILFLTNLPEET+E+MLS
Sbjct: 100 PPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLS-----ENPPNHILFLTNLPEETNELMLS 154
Query: 190 MLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
MLFNQFPGFKEVRLVP RHDIAFVEF+NE+Q+ AA+ AL GFKIT +AMKISFAKK
Sbjct: 155 MLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 211
>gi|281202145|gb|EFA76350.1| U2 small nuclear ribonucleoprotein B [Polysphondylium pallidum
PN500]
Length = 246
Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 95/235 (40%), Positives = 137/235 (58%), Gaps = 25/235 (10%)
Query: 14 VYVTHI----SSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+YV ++ S L + LY++FS +G I++IVA K KMRGQAF++FK+I SA+NALR
Sbjct: 31 IYVNNLNEKPSKKKLTEQLYSLFSPYGSILEIVAAKRQKMRGQAFIVFKDITSASNALRE 90
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
M GF F +PM IQY+K+ SD +SK+ GT++E+ ++ + + K AK
Sbjct: 91 MNGFEFLGRPMSIQYAKSKSDAVSKLDGTYIEKKRERENDQDKKKAKKQQTKKPSTTAKP 150
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLS 189
+A + P P E PPN+ILF+ NLPE+ EMML+
Sbjct: 151 KAASTANA-------------QAAPLQPR--------EAPPNKILFVENLPEQCEEMMLN 189
Query: 190 MLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFA 244
MLF+QFPGF+ + + + +AFVEF+++ +SA A L GFK+TP M ISFA
Sbjct: 190 MLFSQFPGFQGISMTTAKKGVAFVEFDDDSKSAVAMTHLQGFKVTPEKPMVISFA 244
>gi|449469074|ref|XP_004152246.1| PREDICTED: LOW QUALITY PROTEIN: U1 small nuclear ribonucleoprotein
A-like [Cucumis sativus]
Length = 248
Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 107/245 (43%), Positives = 149/245 (60%), Gaps = 25/245 (10%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ +++ +LKKSL A+FSQFG+I++++A KTLK +GQA+V+F+E++SATNAL
Sbjct: 17 IYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFEEVSSATNALFF 76
Query: 70 MQGFPFYD------KPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSK 123
F F + K RIQY+KT SD+I+K G+F+ R K+ R E+ KK +
Sbjct: 77 FFFFQFLEFXFLFAKFRRIQYAKTKSDIIAKSDGSFVPREKRKRH-----EEKGRKKKEQ 131
Query: 124 KKAAKEQARLMQAQQQQMQALSVQQPPVSQPA--PPAPMATAGVPEQPPNQILFLTNLPE 181
A + L A A + Q P S P AP PPN ILF+ NLP
Sbjct: 132 HDANQAGMGLNPAFAGAYGATAHSQVPYSGGVMVPEAPA--------PPNSILFVQNLPH 183
Query: 182 ETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKI 241
ET+ MML MLF Q+PGFKEVR+V + IAFVE+ +E+QS A AL GFK+ P ++M I
Sbjct: 184 ETTPMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYSDEVQSTVAMQALQGFKMNPQNSMLI 243
Query: 242 SFAKK 246
++AKK
Sbjct: 244 TYAKK 248
>gi|313219885|emb|CBY30800.1| unnamed protein product [Oikopleura dioica]
Length = 317
Score = 170 bits (430), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 109/282 (38%), Positives = 152/282 (53%), Gaps = 46/282 (16%)
Query: 11 TNFVYVTHISST----DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNA 66
N +Y+ +IS L L AIF QFG I++I A K L+MRGQAF++F+E+ SA A
Sbjct: 36 NNSIYINNISEKIKIQTLLTELQAIFEQFGNILEIHAKKNLRMRGQAFIVFEEVESAQKA 95
Query: 67 LRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVE-----DPAEAKK 121
+ SMQGFPF+DK MRI ++K DSD+I+K KGTF+E+ + + + + +P +A
Sbjct: 96 VNSMQGFPFHDKKMRIAFAKRDSDLIAKKKGTFVEKDRSKKDKKKKKKKDKKVNPMQAMM 155
Query: 122 SKKKAA--------------------KEQARLMQAQQQQMQALSVQQ------------- 148
S + A++M Q MQ + Q
Sbjct: 156 SMMNPQMMMQMQKMMAQGGMQGGMNMQAMAKMMPQMQANMQKMMTQMQGGGAPAAVPGVA 215
Query: 149 PPVSQPAPPA-PMATAGVPEQ--PPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVP 205
P + P P A P G+PE N I+F+ +LPEE E ML+ LFNQF F EVR+ P
Sbjct: 216 PGAAVPLPSAVPAPNMGLPEGKFGSNNIIFVQDLPEEVDEKMLTALFNQFDNFMEVRMAP 275
Query: 206 NRHD-IAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
++ AF+E+ NE +A AK L GFK+TPT +KI+FAKK
Sbjct: 276 SKTGRAAFIEYTNERSAANAKDTLQGFKVTPTTQLKITFAKK 317
>gi|167518960|ref|XP_001743820.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163777782|gb|EDQ91398.1| predicted protein [Monosiga brevicollis MX1]
Length = 213
Score = 170 bits (430), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 93/229 (40%), Positives = 127/229 (55%), Gaps = 32/229 (13%)
Query: 18 HISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYD 77
I +L+++LY +FSQFG I+D+VALKT KMRGQAF++FK++ A+NALRSMQ FP +D
Sbjct: 17 RIQKEELRRTLYGLFSQFGGILDVVALKTNKMRGQAFIVFKDVGCASNALRSMQKFPLFD 76
Query: 78 KPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQ 137
KPM IQY+K S K GT Q L Q +
Sbjct: 77 KPMSIQYAKAKSYATMKEDGTL------------------------------QKHLAQQR 106
Query: 138 QQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPG 197
+ + + P ++ P+ATA E N I++ +NLP+ET++ ML LF + G
Sbjct: 107 KAKQSSADTNGEPPAKMIKMTPVATA--SEGTNNTIVYCSNLPQETTKEMLLALFGELKG 164
Query: 198 FKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
EVRLV R DIAFVEF E ++ A AL GF++ H M ++FAKK
Sbjct: 165 LVEVRLVEGRPDIAFVEFSTEQEAGIAISALDGFQVDAEHKMSVAFAKK 213
>gi|297843490|ref|XP_002889626.1| hypothetical protein ARALYDRAFT_887900 [Arabidopsis lyrata subsp.
lyrata]
gi|297335468|gb|EFH65885.1| hypothetical protein ARALYDRAFT_887900 [Arabidopsis lyrata subsp.
lyrata]
Length = 243
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 96/234 (41%), Positives = 144/234 (61%), Gaps = 28/234 (11%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ +I+ +LK+SLY +FS FG+I+D+VALKT K+RGQA+V+F ++ +A+NA+
Sbjct: 12 IYIKNINEKIKKEELKRSLYCLFSHFGRILDVVALKTPKLRGQAWVVFTQVTAASNAVLQ 71
Query: 70 MQGFPFYDKP-----MRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKK 124
MQ FPFYD RIQY+K+ SD ++K +GTF+ + KK+++ E K +K
Sbjct: 72 MQNFPFYDTFSSLMFQRIQYAKSKSDYVTKAQGTFVPKEKKMKQ---------EDKVERK 122
Query: 125 KAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETS 184
+ A+E QQ M + Q P PP +G PPN ILF+ NLP E +
Sbjct: 123 RHAEE------TQQPSMPNGATTQN--GMPVPP--FQPSGQDTMPPNNILFIHNLPIEMT 172
Query: 185 EMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHA 238
MML +LF Q+ GFKE+R++ + IAFVE+E+++QS+ A AL GF+ T +
Sbjct: 173 SMMLQLLFEQYTGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFQDHSTES 226
>gi|313232389|emb|CBY24056.1| unnamed protein product [Oikopleura dioica]
Length = 317
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 109/282 (38%), Positives = 152/282 (53%), Gaps = 46/282 (16%)
Query: 11 TNFVYVTHISST----DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNA 66
N +Y+ +IS L L AIF QFG I++I A K L+MRGQAF++F+E+ SA A
Sbjct: 36 NNSIYINNISEKIKIQTLLTELQAIFEQFGNILEIHAKKNLRMRGQAFIVFEEVESAQKA 95
Query: 67 LRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVE-----DPAEAKK 121
+ SMQGFPF+DK MRI ++K DSD+I+K KGTF+E+ + + + + +P +A
Sbjct: 96 VNSMQGFPFHDKKMRIAFAKRDSDLIAKKKGTFVEKDRSKKDKKKKKKKDKKVNPMQAMM 155
Query: 122 SKKKAA--------------------KEQARLMQAQQQQMQALSVQQ------------- 148
S + A++M Q MQ + Q
Sbjct: 156 SMMNPQMMMQMQKMMAQGGMQGGMNMQAMAKMMPQMQANMQKMMSQMQGGGAPAAVPGVA 215
Query: 149 PPVSQPAPPA-PMATAGVPEQ--PPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVP 205
P + P P A P G+PE N I+F+ +LPEE E ML+ LFNQF F EVR+ P
Sbjct: 216 PGAAVPLPSAVPAPNMGLPEGKFGSNNIIFVQDLPEEVDEKMLTALFNQFDNFMEVRMAP 275
Query: 206 NRHD-IAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
++ AF+E+ NE +A AK L GFK+TPT +KI+FAKK
Sbjct: 276 SKTGRAAFIEYTNERSAANAKDTLQGFKVTPTTQLKITFAKK 317
>gi|217069866|gb|ACJ83293.1| unknown [Medicago truncatula]
Length = 211
Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 96/206 (46%), Positives = 131/206 (63%), Gaps = 15/206 (7%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
I +LK+SLY +FSQ+G+I+DI+ALKT K+RGQA+V F E+ +A+NA+R MQ FPFY+K
Sbjct: 21 IKKDELKRSLYCLFSQYGRILDIIALKTPKLRGQAWVCFSEVTAASNAVRQMQNFPFYEK 80
Query: 79 PMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQ 138
PMRIQY+KT SD I+K +G+F+ R +K +KQ E A +SK+ A +
Sbjct: 81 PMRIQYAKTKSDCIAKEEGSFVPR-EKKKKQEEKAEKKKYADESKQSAVPNGGTHGASNG 139
Query: 139 QQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGF 198
+ +P A A A PN ILF+ NLP ET+ ML MLF Q+PGF
Sbjct: 140 GSTASF--------RPGSGAQEAAA------PNNILFIENLPYETTGRMLEMLFEQYPGF 185
Query: 199 KEVRLVPNRHDIAFVEFENEMQSAAA 224
KEVRL+ + IAFV+FE++ QS+ A
Sbjct: 186 KEVRLIEAKPGIAFVDFEDDGQSSMA 211
>gi|358340305|dbj|GAA48228.1| U2 small nuclear ribonucleoprotein B'' [Clonorchis sinensis]
Length = 225
Score = 167 bits (423), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 103/237 (43%), Positives = 151/237 (63%), Gaps = 24/237 (10%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+YV +++ DL+K+LY +F Q G+++DI+A+KT+KMRGQAF+I++++ SAT ALRS
Sbjct: 9 LYVNNLNDKVKKADLRKALYYLFGQHGRLLDIIAMKTMKMRGQAFIIYQDVQSATTALRS 68
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
+QGF + +PMRI Y+K DS I ++KG AE +K +++ ++
Sbjct: 69 LQGFNLFQRPMRIAYAKRDSTQIVQLKGV-----------------SAEVQKRREEEREK 111
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLS 189
+ R AQ+ A + Q + P + +Q PN ILF+TNLPEET++ ML+
Sbjct: 112 RKRRKVAQRLAAAAAAAQAATQAANGPAGTGDALNLLDQ-PNHILFVTNLPEETTDAMLT 170
Query: 190 MLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
MLF+QF GFKE R P + FVE+E+ Q+AAA+ A GFK+TPTHAM+ISFAKK
Sbjct: 171 MLFSQFSGFKEARRAPG--GVWFVEYESAEQAAAARSAYEGFKLTPTHAMQISFAKK 225
>gi|308457664|ref|XP_003091202.1| CRE-RNP-2 protein [Caenorhabditis remanei]
gi|308257956|gb|EFP01909.1| CRE-RNP-2 protein [Caenorhabditis remanei]
Length = 206
Score = 167 bits (422), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 88/246 (35%), Positives = 141/246 (57%), Gaps = 44/246 (17%)
Query: 5 LAHICVTNFVYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEI 60
+A I + +Y+ +++ +L+KSL A+F QFG+I+ ++ +TLKMRGQA VIF ++
Sbjct: 1 MAEIQPNSTLYINNLNEKIKIDELRKSLVAVFKQFGEIVSVMCFRTLKMRGQAHVIFTDV 60
Query: 61 ASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAK 120
+SA A ++ GFPFY+KPM+IQ+++ +SD I+K KGT++ER
Sbjct: 61 SSAAAAKEALTGFPFYEKPMKIQFAREESDAIAKEKGTYVER------------------ 102
Query: 121 KSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLP 180
Q + + + Q+ ++ PA PPN+ILF TNLP
Sbjct: 103 ---------QPKYLSEKIQKKPKSKKRENGGEGPA-------------PPNKILFCTNLP 140
Query: 181 EETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMK 240
+ + ML ++FNQF G K++R+VPNR IAFVEF+ + + A+ L+ F+I+ H M+
Sbjct: 141 DNATAEMLEIMFNQFSGLKDIRMVPNRPGIAFVEFDTDSLAIPARTTLNNFRISAEHVMR 200
Query: 241 ISFAKK 246
+ +AKK
Sbjct: 201 VDYAKK 206
>gi|301115920|ref|XP_002905689.1| U1 small nuclear ribonucleoprotein A [Phytophthora infestans T30-4]
gi|262110478|gb|EEY68530.1| U1 small nuclear ribonucleoprotein A [Phytophthora infestans T30-4]
Length = 233
Score = 163 bits (413), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 90/228 (39%), Positives = 136/228 (59%), Gaps = 25/228 (10%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
I + +K +LYA SQ+G+I++IV + ++RGQA+V F ++ SA++ALR++ G +DK
Sbjct: 31 IKADRMKATLYATLSQYGKILEIVMGRARRLRGQAWVTFDDVPSASSALRTVNGTTLFDK 90
Query: 79 PMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQ 138
P+ I ++K +DVI++ +G+F+ R K+ R DP +++ KK A
Sbjct: 91 PVVIHFAKEKADVIARREGSFVPREKRKR-------DPKPEQQTTKKQASANGSAAATGS 143
Query: 139 QQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGF 198
+QP PA + PN+ILFL LPE ++ ML +LF Q+ GF
Sbjct: 144 STA----------AQPRMPA--------QNLPNKILFLEELPESCNKEMLGVLFKQYQGF 185
Query: 199 KEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
KEVR+VP + +AFVEF +E Q+A A L GFK+TPT A+K+SFAKK
Sbjct: 186 KEVRMVPGKKGLAFVEFGDEAQAAIALQGLFGFKLTPTEALKVSFAKK 233
>gi|328767502|gb|EGF77551.1| hypothetical protein BATDEDRAFT_13807 [Batrachochytrium
dendrobatidis JAM81]
gi|328767632|gb|EGF77681.1| hypothetical protein BATDEDRAFT_91336 [Batrachochytrium
dendrobatidis JAM81]
gi|328771962|gb|EGF82001.1| hypothetical protein BATDEDRAFT_9954 [Batrachochytrium
dendrobatidis JAM81]
Length = 235
Score = 163 bits (413), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 88/243 (36%), Positives = 138/243 (56%), Gaps = 21/243 (8%)
Query: 8 ICVTNFVYVTHISST----DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASA 63
I V +Y+ +I+ +L++SLY +FSQ G+++DIVALKT+KMRGQAFV+F +A
Sbjct: 10 ITVGQTLYINNINDRIRKKELRESLYYLFSQHGRVLDIVALKTMKMRGQAFVVFDTAPAA 69
Query: 64 TNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSK 123
T A+R +QGFP YDK M+I Y+KT S+ + G++ +R + E ++
Sbjct: 70 TVAMRELQGFPLYDKNMQIAYAKTKSNAVKNRDGSYSKRSRAA---------AIEMNGNE 120
Query: 124 KKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEET 183
A+ + + + + +++ + T N ILF++ LP
Sbjct: 121 SDASDDDTLHKRQRGDEYDSVTTGRHLKDNEEEMEEDDT--------NAILFVSQLPSSV 172
Query: 184 SEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISF 243
+E LS LF Q GFKEVR+VP R DIAFVE+ + Q+ A++ L+G +ITP AM++ F
Sbjct: 173 TEESLSTLFAQNEGFKEVRIVPGRPDIAFVEYASSAQADQARMVLNGCQITPDQAMRVEF 232
Query: 244 AKK 246
A++
Sbjct: 233 ARR 235
>gi|320167853|gb|EFW44752.1| SNF [Capsaspora owczarzaki ATCC 30864]
Length = 262
Score = 163 bits (413), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 98/244 (40%), Positives = 142/244 (58%), Gaps = 17/244 (6%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+YV +++ +L+ +LY IF+QFG ++DIVALKTLKMRGQAF++F +I S+ NALRS
Sbjct: 25 LYVNNLNEKLKKEELRAALYTIFTQFGPVLDIVALKTLKMRGQAFIVFHDITSSANALRS 84
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKG---TFMERPKKVRKQPAPVEDPAEAKKSKKKA 126
+QGF FY KPMRI ++K+ S + + G + + RP + Q E + A
Sbjct: 85 LQGFSFYGKPMRITFAKSRSYAVGRFNGEPDSHVRRPFIPKNQRPKGEKQPGKRNPNGAA 144
Query: 127 AKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEM 186
A QA + A + P+ Q P + PE P N ILF+ NLP+ ++
Sbjct: 145 AASSNGDAQAMNTEAPAAAGNHAPMLQQQQPG-FGFSQAPEIPHN-ILFVQNLPQGITQ- 201
Query: 187 MLSMLFNQFPGFK----EVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKIS 242
+FN F G+ +VRLVPNR DIAFVE+ENE +A AK LHG+K+ + + ++
Sbjct: 202 --DDIFNLFRGYTAGSCDVRLVPNRADIAFVEYENEGIAANAKATLHGYKMGDNN-LSVT 258
Query: 243 FAKK 246
F+KK
Sbjct: 259 FSKK 262
>gi|384496525|gb|EIE87016.1| hypothetical protein RO3G_11727 [Rhizopus delemar RA 99-880]
Length = 292
Score = 163 bits (412), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 91/232 (39%), Positives = 134/232 (57%), Gaps = 32/232 (13%)
Query: 24 LKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83
+K SL +F QFG+++D+VA + ++MRGQAFV + + SA A++ +Q F YDKPM +Q
Sbjct: 84 MKNSLRTLFKQFGEVLDVVAHRNIRMRGQAFVAYPDQESADKAIKELQHFVLYDKPMIVQ 143
Query: 84 YSKTDSDVISKIKGTF-------MERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQA 136
YS+ SDV +K G + + R ++V K P P K SK+ A + +R
Sbjct: 144 YSRNRSDVHAKRDGDYEIHYKARIARKEEVSKMPLPGSHKPTFKSSKR--ANKTSRGKGT 201
Query: 137 QQQQMQALSVQQPPVSQPAPPAPMATAGVPEQ--PPNQILFLTNLPEETSEMMLSMLFNQ 194
Q +TA +P++ PPN ILFL NLPE ++ L LF +
Sbjct: 202 SQH---------------------STAHIPDEYLPPNSILFLQNLPETITQQQLVDLFQR 240
Query: 195 FPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
+PGF+EVR VP + IAFVE+ENE+QSA A+ L G+ + P A+K++FA+K
Sbjct: 241 YPGFREVRTVPAKKSIAFVEYENEIQSAVARAELSGYFLGPDQALKVTFARK 292
>gi|90086371|dbj|BAE91738.1| unnamed protein product [Macaca fascicularis]
Length = 147
Score = 163 bits (412), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 93/168 (55%), Positives = 110/168 (65%), Gaps = 22/168 (13%)
Query: 80 MRIQYSKTDSDVISKIKGTFMERPKKVRKQPAP-VEDPAEAKKSKKKAAKEQARLMQAQQ 138
MRIQY+KTDSD+ISK++GTF ++ KK K+ A VE A K + Q
Sbjct: 1 MRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKAVEQTATTTNKKPGQGTPNSANTQGN- 59
Query: 139 QQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGF 198
+ P P VP+ PPN ILFL NLPEET+EMMLSMLFNQFPGF
Sbjct: 60 -------------TTPNPQ-------VPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGF 99
Query: 199 KEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
KEVRLVP RHDIAFVEFEN+ Q+ AA+ AL GFKITP+HAMKI++AKK
Sbjct: 100 KEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 147
>gi|322792536|gb|EFZ16487.1| hypothetical protein SINV_12462 [Solenopsis invicta]
Length = 139
Score = 162 bits (411), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 92/138 (66%), Positives = 104/138 (75%), Gaps = 14/138 (10%)
Query: 81 RIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQ 140
RIQY+KTDSD+I+K+KGTF ERPKK K+ PV D EAK++KK+A KEQA+ +QQ
Sbjct: 16 RIQYAKTDSDIIAKMKGTFAERPKKP-KRVIPVAD-EEAKRAKKRA-KEQAK--HSQQIG 70
Query: 141 MQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKE 200
A Q P + VPEQPPNQILFLTNLP+ETSEMMLSMLFNQFPGFKE
Sbjct: 71 YHASVPQHPG---------LVNTAVPEQPPNQILFLTNLPDETSEMMLSMLFNQFPGFKE 121
Query: 201 VRLVPNRHDIAFVEFENE 218
VRLVPNRHDIAFVEFENE
Sbjct: 122 VRLVPNRHDIAFVEFENE 139
>gi|402220077|gb|EJU00150.1| RNA-binding domain-containing protein [Dacryopinax sp. DJM-731 SS1]
Length = 276
Score = 160 bits (405), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 93/245 (37%), Positives = 144/245 (58%), Gaps = 27/245 (11%)
Query: 9 CVTNFVYVTHISST----DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASAT 64
C T VYV +++ + LK++L +F +G+++D+VA L+MRGQAFV F + +A
Sbjct: 52 CET--VYVQNLNESVTMNTLKQTLTNLFKNYGEVLDVVAHHNLRMRGQAFVSFADPEAAA 109
Query: 65 NALRSMQGFPFYDKPMRIQYSKTDSD-VISKIKGTFMERPKKVRKQPAPVEDPAEAKKSK 123
A++ + FP Y KPM++ ++KT SD V+ K+ GT ME K R + +
Sbjct: 110 KAVKEVDRFPLYGKPMKLSFAKTRSDAVVQKLDGTHMEEYKAERME-------------R 156
Query: 124 KKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQ--PPNQILFLTNLPE 181
KK A+ L + Q +++A + AP A +P++ PPN+ILFL NLP+
Sbjct: 157 KKRARADNPLRRKAQARLKASAG-----DGTAPQAGRRIVQMPDEYLPPNKILFLQNLPD 211
Query: 182 ETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKI 241
T+ L MLF+Q+PG EVRLVP + DIAFVE+ +E ++ AK ALH +++ MK+
Sbjct: 212 STTLDQLQMLFSQYPGLHEVRLVPTKKDIAFVEYVDENAASTAKDALHNYRLDGEAKMKV 271
Query: 242 SFAKK 246
+FA+K
Sbjct: 272 TFARK 276
>gi|328774045|gb|EGF84082.1| hypothetical protein BATDEDRAFT_84797 [Batrachochytrium
dendrobatidis JAM81]
Length = 262
Score = 160 bits (405), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 89/228 (39%), Positives = 127/228 (55%), Gaps = 39/228 (17%)
Query: 22 TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMR 81
T LK +L +FS++G I+DI + + RGQAFV F+ + SA A + GFP +++PM
Sbjct: 71 TALKTALSTVFSKYGDILDIKVKRNVGHRGQAFVSFQTVESAVKAKEEVNGFPLFNRPMD 130
Query: 82 IQYSKTDSDVISKIKGTFMERPKKVRK--QPAPVEDPAEAKKSKKKAAKEQARLMQAQQQ 139
IQ+++ S +S + GT E +K ++ + D +EA + K+K+ E++
Sbjct: 131 IQFAREQSFAVSVLAGTVEEHKRKRKEMLKERSAFDASEASRKKQKSNSEES-------- 182
Query: 140 QMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFK 199
PPN ILF+ NLP + + LS LFNQFPGFK
Sbjct: 183 ----------------------------LPPNSILFIQNLPTDITNASLSALFNQFPGFK 214
Query: 200 EVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTH-AMKISFAKK 246
EVRLVP R DIAFVE+ NEM SA AK ALHG+++ P +K++FAKK
Sbjct: 215 EVRLVPGRSDIAFVEYHNEMHSAIAKQALHGYRLLPEQEEIKVTFAKK 262
>gi|440801091|gb|ELR22116.1| hypothetical protein ACA1_159130 [Acanthamoeba castellanii str.
Neff]
Length = 270
Score = 159 bits (402), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 104/277 (37%), Positives = 150/277 (54%), Gaps = 61/277 (22%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+YV +++ +L+K+LY +FSQ+G ++DIVA K+LK+RGQAFVIF++I SA+ AL++
Sbjct: 11 LYVNNLNEKVKRDELRKALYGLFSQYGTVLDIVAQKSLKLRGQAFVIFRDIGSASTALKA 70
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAK- 128
+Q F FYDKPM IQY+K+ SD+++KI+GTF+ R K+ R++ + + +KK +
Sbjct: 71 LQSFAFYDKPMHIQYAKSKSDLVAKIRGTFVPREKRPREEKPKPKPKKKETPAKKPKDEA 130
Query: 129 EQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQ-----ILFLTNLPEET 183
QA L Q A P AT P +LF+ NLP++T
Sbjct: 131 SQAALAPGQ-----------------AAPGGGATGPAAPPQPKPNPPNKLLFVQNLPDQT 173
Query: 184 SEMMLSMLFNQFPGFKE----------------------------------VRLVPNRHD 209
+E+MLSMLF Q+ V +VP +
Sbjct: 174 TELMLSMLFQQYAITTILNININITIVTTIVNSNNVAITIRLTTRLAIVFVVDMVPGKQG 233
Query: 210 IAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
IAFVEF +EM++A A L FKITPTH M +SFAKK
Sbjct: 234 IAFVEFNSEMEAAVAMTGLQHFKITPTHLMVVSFAKK 270
>gi|425868370|gb|AFY04317.1| sans fille, partial [Mengenilla sp. BMW-2012]
Length = 130
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 92/145 (63%), Positives = 104/145 (71%), Gaps = 15/145 (10%)
Query: 48 KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVR 107
KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRI YSKTDSD+I+K+KGTF ERPKK
Sbjct: 1 KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRINYSKTDSDIIAKMKGTFTERPKKP- 59
Query: 108 KQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPE 167
K+ P D ++ ++ QA+QQQM P +Q + A VPE
Sbjct: 60 KRVVPAAD-------EEAKKAKKRAKEQAKQQQMG----YTPGAAQ---HTGLTNAAVPE 105
Query: 168 QPPNQILFLTNLPEETSEMMLSMLF 192
QPPNQILFLTNLP+ETSEMMLSMLF
Sbjct: 106 QPPNQILFLTNLPDETSEMMLSMLF 130
>gi|325182719|emb|CCA17174.1| U1 small nuclear ribonucleoprotein A putative [Albugo laibachii
Nc14]
Length = 234
Score = 156 bits (395), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 86/223 (38%), Positives = 128/223 (57%), Gaps = 31/223 (13%)
Query: 24 LKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83
LK+SLYA FSQFG++++I K +RGQA++ F ++ SA+NALRSM +DK M +Q
Sbjct: 43 LKQSLYASFSQFGKVLEIAIFKARFLRGQAWITFDDVPSASNALRSMNNTTIFDKNMIVQ 102
Query: 84 YSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQA 143
++K +SDVI++ GTF+ R K+ R P + E ++ K+ A Q+Q
Sbjct: 103 FAKQESDVIARRNGTFVPREKQSRDVPHSSKSDEEMRERKRSMAPPPPPPRQSQHL---- 158
Query: 144 LSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRL 203
P+ ILFL +LP ++ ML +LF Q+ G+KEVR+
Sbjct: 159 --------------------------PHHILFLQDLPPSCNQDMLRVLFEQYHGYKEVRM 192
Query: 204 VPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
VP + +AFVEF +E Q++ A L+GFK+T T +KISFAK+
Sbjct: 193 VPGK-SLAFVEFGDESQASVALQGLYGFKLTSTDVLKISFAKR 234
>gi|425868372|gb|AFY04318.1| sans fille, partial [Anopheles gambiae]
Length = 116
Score = 156 bits (395), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 89/146 (60%), Positives = 103/146 (70%), Gaps = 31/146 (21%)
Query: 48 KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVR 107
KMRGQAF+IFKEI+SATNA+R+MQGFPFYDKPMRI+YSKTDSD+I+K+KGTF ERPK+V
Sbjct: 1 KMRGQAFIIFKEISSATNAMRTMQGFPFYDKPMRIKYSKTDSDMIAKLKGTFQERPKRV- 59
Query: 108 KQPAPVEDPAEAKKSKK-KAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVP 166
KQP P++ E KK+KK K A E + ATA
Sbjct: 60 KQPKPIQ--TEDKKAKKLKNAGEVGATNNS------------------------ATA--- 90
Query: 167 EQPPNQILFLTNLPEETSEMMLSMLF 192
EQPPNQILFLTNLPEET+EMMLSMLF
Sbjct: 91 EQPPNQILFLTNLPEETNEMMLSMLF 116
>gi|346464627|gb|AEO32158.1| hypothetical protein [Amblyomma maculatum]
Length = 199
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 88/182 (48%), Positives = 123/182 (67%), Gaps = 15/182 (8%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
I+ +LKKSL A+FSQ+G I++++A KTLK +GQA+V+F++++ A+ AL+ MQGFPFYDK
Sbjct: 28 INLNELKKSLRAVFSQYGNILEVLAFKTLKHKGQAWVVFEDVSKASEALKQMQGFPFYDK 87
Query: 79 PMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKK-KAAKEQARLMQAQ 137
PMRIQY+KT SD+I+K GTF+ R ++ R +D AE K+ ++ A+ A L A
Sbjct: 88 PMRIQYAKTKSDIIAKSDGTFVPRERRKRH-----DDKAERKRREQHHDAQSGAGLNYA- 141
Query: 138 QQQMQALSVQQPPVSQPAPPAPMATAGVPE--QPPNQILFLTNLPEETSEMMLSMLFNQF 195
A V PP+SQ P A + +PE PPN ILF+ NLP E++ MML MLF Q+
Sbjct: 142 ----GAYGV-APPLSQ-LPFTGXAKSMLPEAPAPPNNILFVQNLPHESTPMMLQMLFCQY 195
Query: 196 PG 197
PG
Sbjct: 196 PG 197
>gi|403411353|emb|CCL98053.1| predicted protein [Fibroporia radiculosa]
Length = 271
Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 91/230 (39%), Positives = 130/230 (56%), Gaps = 27/230 (11%)
Query: 24 LKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83
LK SL +F +G+++D+VA L+MRGQAFV F +A AL+ ++GFP Y KPM+I
Sbjct: 62 LKASLRGLFKSYGEVLDVVAHSNLRMRGQAFVSFDSAEAAKKALKEVRGFPLYSKPMQIS 121
Query: 84 YSKTDSD-VISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKA----AKEQARLMQAQQ 138
+++T SD V+ K+ E K R E KKS + K +AR M A+
Sbjct: 122 FARTRSDAVVKKLDSVHYEEHKARR---------MEYKKSTRYTNPLKRKYRARKMAAEM 172
Query: 139 QQMQALSVQQPPVSQPAPPAPMATAGVPEQ--PPNQILFLTNLPEETSEMMLSMLFNQFP 196
A V + P Q +P++ PPN+ILFL NLPE S+ L LF+Q+P
Sbjct: 173 DGAGAAPVSKRPNVQ-----------MPDEYLPPNKILFLQNLPESVSKDQLMALFSQYP 221
Query: 197 GFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
EVRL+P + DIAFVE+ +E + AK ALH +K+ + +KI+FA+K
Sbjct: 222 NLHEVRLIPTKKDIAFVEYMDEGSATVAKDALHNYKLDGENKIKITFARK 271
>gi|336365379|gb|EGN93730.1| hypothetical protein SERLA73DRAFT_189480 [Serpula lacrymans var.
lacrymans S7.3]
gi|336377939|gb|EGO19099.1| hypothetical protein SERLADRAFT_480314 [Serpula lacrymans var.
lacrymans S7.9]
Length = 262
Score = 153 bits (386), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 89/230 (38%), Positives = 136/230 (59%), Gaps = 27/230 (11%)
Query: 24 LKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83
LK SL +F +G+++D+VA L+MRGQAFV F A A++ ++GFP Y KPM+I
Sbjct: 53 LKASLRGLFKSYGEVLDVVAHGNLRMRGQAFVSFDSAEVAKKAMKEVRGFPLYSKPMQIS 112
Query: 84 YSKTDSD-VISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAA----KEQARLMQAQQ 138
+++T SD V+ +++G E+ K R AE KK+ + + K +A+ M A+
Sbjct: 113 FARTRSDAVVKRLEGETFEQHKARR---------AEHKKNTRYSNPLKQKFRAKRMAAEM 163
Query: 139 QQMQALSVQQPPVSQPAPPAPMATAGVPEQ--PPNQILFLTNLPEETSEMMLSMLFNQFP 196
+ A+ PAP P +P++ PPN+ILFL NLPE ++ L LF+Q+P
Sbjct: 164 DGVTAV---------PAPKRP--NVQMPDEYLPPNKILFLQNLPENVTKDQLMALFSQYP 212
Query: 197 GFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
EVRL+P + DIAFVE+ +E + AK ALH +K+ + +KI+FA+K
Sbjct: 213 NLYEVRLIPTKKDIAFVEYIDEGSAGVAKDALHNYKLDGENKIKITFARK 262
>gi|348683636|gb|EGZ23451.1| hypothetical protein PHYSODRAFT_484798 [Phytophthora sojae]
Length = 236
Score = 152 bits (385), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 87/228 (38%), Positives = 132/228 (57%), Gaps = 25/228 (10%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
I + +K +LYA SQ G+I++IV + ++RGQA+V F +I SA+NALR++ G +DK
Sbjct: 34 IKADRMKATLYASLSQHGKILEIVMGRARRLRGQAWVTFDDIPSASNALRAVNGSVLFDK 93
Query: 79 PMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQ 138
P+ I ++K +DVI++ +G+F+ R K+ R + K++ + A + +
Sbjct: 94 PVVIHFAKEKADVIARREGSFVPREKRKRDPKPAQQQQQAKKQAGEGGAAGSSGSVPPPP 153
Query: 139 QQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGF 198
Q + PN+ILFL LPE ++ MLS+LF Q+ GF
Sbjct: 154 PPAQNV-------------------------PNKILFLEALPESCNKEMLSVLFKQYQGF 188
Query: 199 KEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
KEVR+VP + +AFVEF +E Q+A A L GFK+TPT A+K+SFAKK
Sbjct: 189 KEVRMVPGKKGLAFVEFGDEAQAAIALQGLFGFKLTPTDALKVSFAKK 236
>gi|47028317|gb|AAT09091.1| small nuclear ribonucleoprotein [Bigelowiella natans]
Length = 227
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 87/241 (36%), Positives = 131/241 (54%), Gaps = 34/241 (14%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ +++ +L+ +LY FSQFG I+++ A K RGQA+++F +++ AT ++R
Sbjct: 13 IYIQNLNEKLKRDELRINLYHAFSQFGNILEVFASKKGNKRGQAWIVFDDLSGATKSVRG 72
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
MQ F+ K MR+ Y+K SD+ISK G+++ R K+ +P K + AK
Sbjct: 73 MQNVDFFGKKMRLSYAKEKSDIISKRDGSYVPREKRKMNSGDMKIEPKVQKTTAVATAKG 132
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQ----PPNQILFLTNLPEETSE 185
+ AP PE+ PPN+ILF NLP + ++
Sbjct: 133 EG--------------------------APAMETDEPEEEDSSPPNKILFARNLPPQATK 166
Query: 186 MMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAK 245
ML LF Q+ GFKEVRLV + DIAF+EF + +SA AK L FKIT +AMK++FAK
Sbjct: 167 KMLETLFKQYDGFKEVRLVDGKPDIAFIEFNDAQESALAKEGLQNFKITSQNAMKLTFAK 226
Query: 246 K 246
+
Sbjct: 227 Q 227
>gi|167537765|ref|XP_001750550.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163770971|gb|EDQ84646.1| predicted protein [Monosiga brevicollis MX1]
Length = 345
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 97/248 (39%), Positives = 141/248 (56%), Gaps = 17/248 (6%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ ++S +LKK+L AIF+QFG+I+ +VA+ + K RGQAFV+F I +A AL +
Sbjct: 99 LYINNLSERVKEDELKKALEAIFNQFGKILRVVAMSSFKRRGQAFVVFDSIEAAEKALNA 158
Query: 70 MQGFPFYDKPMRIQYS--------KTDSDVISKIKGTFMERPKKVRKQPAPVEDPAE--- 118
MQ FPF KPMRI ++ K D ++K RP AP E
Sbjct: 159 MQSFPFCGKPMRINFAKTKSDIVAKNDGAFKPRVKAPLGPRPTPPGGGQAPYPGAGEYMQ 218
Query: 119 AKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTN 178
A S + + ++ R + + P+ AP A + P+ ILFL N
Sbjct: 219 APGSPGEPSSKRGRYESGEAAPPPPPGPPG--QTAPSGHAPAAPPPNMAEDPSPILFLEN 276
Query: 179 LPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHA 238
LP + ++ ML+ LF +FPGFKEVRLVP R DI FVE+ENE+Q++AA AL+G ++TP +
Sbjct: 277 LPSDRTQEMLTALFKEFPGFKEVRLVPIRPDIGFVEYENEVQASAALPALNGKEVTPGNK 336
Query: 239 MKISFAKK 246
M++SF+KK
Sbjct: 337 MRVSFSKK 344
>gi|157831077|pdb|1FHT|A Chain A, Rna-Binding Domain Of The U1a Spliceosomal Protein U1a117,
Nmr, 43 Structures
Length = 116
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 70/100 (70%), Positives = 87/100 (87%), Gaps = 4/100 (4%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LKKSLYAIFSQFGQI+DI+ ++LKMRGQAFVIFKE++SATNALRS
Sbjct: 11 IYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRS 70
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQ 109
MQGFPFYDKPMRIQY+KTDSD+I+K+KGTF+ER +K K+
Sbjct: 71 MQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKR 110
>gi|409052167|gb|EKM61643.1| hypothetical protein PHACADRAFT_248371 [Phanerochaete carnosa
HHB-10118-sp]
Length = 267
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 87/233 (37%), Positives = 132/233 (56%), Gaps = 33/233 (14%)
Query: 24 LKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83
LK SL +F +G+++D+VA L+MRGQAFV F+ A AL+ ++GFP Y KPM+I
Sbjct: 58 LKASLRGLFKSYGEVLDVVAHSNLRMRGQAFVSFENAEVAKKALKEVRGFPLYSKPMQIS 117
Query: 84 YSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKA--------AKEQARLMQ 135
Y++T SD + K + +PA ++ E +K KKA AK + + +
Sbjct: 118 YARTRSDAVVK------------KLEPATLDAHLERRKEHKKATRYTNPIKAKFRQKRLA 165
Query: 136 AQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQ--PPNQILFLTNLPEETSEMMLSMLFN 193
A+ A+ V + P +P++ PPN+ILFL NLPE ++ L LF+
Sbjct: 166 AEMDGASAVPVSRRP-----------NVMMPDEYLPPNKILFLQNLPENVTKDQLMALFS 214
Query: 194 QFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
Q+P EVRL+P + DIAFVE+ +E + AK ALH +K+ + +KI+FA+K
Sbjct: 215 QYPNLYEVRLIPTKKDIAFVEYLDEASATVAKDALHNYKLDGENKIKITFARK 267
>gi|389742376|gb|EIM83563.1| RNA-binding domain-containing protein [Stereum hirsutum FP-91666
SS1]
Length = 274
Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 88/227 (38%), Positives = 129/227 (56%), Gaps = 21/227 (9%)
Query: 24 LKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83
LK SL +F +G+++D+VA L+MRGQAFV F+ A AL+ ++GFP Y KPM+I
Sbjct: 65 LKNSLRGLFKSYGEVLDVVAHNNLRMRGQAFVSFESPEIAAKALKEVKGFPLYSKPMQIS 124
Query: 84 YSKTDSD-VISKIKGTFMERPKKVR---KQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQ 139
+++T SD V+ K+ T ++ K+ R K+ +P + K +K+ A E
Sbjct: 125 FARTRSDAVVKKLDATNFDQHKEHRLQHKKETRYTNPIKRKFREKRVASE---------- 174
Query: 140 QMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFK 199
M + S PAP P PPN+ILFL NLPE ++ L LF Q+P
Sbjct: 175 -MDGAT------SAPAPKRPNVQMPDEYLPPNKILFLQNLPESVTKPQLEALFTQYPNLH 227
Query: 200 EVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
EVRL+P + DIAFVE+ +E + AK ALH +K+ + +KI+FA+K
Sbjct: 228 EVRLIPTKKDIAFVEYVDEGSATVAKDALHNYKLDGENKIKITFARK 274
>gi|307102554|gb|EFN50825.1| hypothetical protein CHLNCDRAFT_28661 [Chlorella variabilis]
Length = 219
Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 90/236 (38%), Positives = 132/236 (55%), Gaps = 29/236 (12%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+YV++ I +LK+ LYA+F QFG+I+DIVA++T K+RGQA++++ +I +AT ALR
Sbjct: 9 LYVSNLQEKIKKRELKQLLYALFGQFGKIVDIVAMRTDKLRGQAWIVYADITAATAALRG 68
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
MQ FPF+DKP+R+ ++K+ S ++ K K P A + KA +
Sbjct: 69 MQDFPFFDKPLRVSFAKSASHAVAPKK----GGKGAKGKPPKAPAAVAAGGDAAAKAKQP 124
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLS 189
+Q+ A+ V +P N LF+ NLP T+ ML
Sbjct: 125 ADAAAAGGRQKAAAVDVGEP---------------------NAKLFVENLPAATTAAMLE 163
Query: 190 MLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAK 245
MLF QFPG KEV VP + IAF+EFE EMQ+ A L GFK+TP ++M I+++K
Sbjct: 164 MLFQQFPGCKEVTTVPAKPGIAFIEFETEMQATVAMTGLQGFKVTPQNSMTITYSK 219
>gi|122919626|pdb|2B0G|A Chain A, Solution Structure Of Drosophila Melanogaster Snf Rbd2
gi|134103993|pdb|2AYM|A Chain A, Solution Structure Of Drosophila Melanogaster Snf Rbd2
Length = 83
Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 72/80 (90%), Positives = 75/80 (93%)
Query: 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKL 226
EQPPNQILFLTNLPEET+EMMLSMLFNQFPGFKEVRLVPNRHDIAFVEF E+QS AAK
Sbjct: 4 EQPPNQILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFTTELQSNAAKE 63
Query: 227 ALHGFKITPTHAMKISFAKK 246
AL GFKITPTHAMKI+FAKK
Sbjct: 64 ALQGFKITPTHAMKITFAKK 83
>gi|425868378|gb|AFY04321.1| sans fille, partial [Clogmia albipunctata]
Length = 116
Score = 150 bits (378), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 85/145 (58%), Positives = 94/145 (64%), Gaps = 31/145 (21%)
Query: 50 RGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQ 109
RGQAFVIFKE+ SATNALR+MQGFPFYDKPMRIQYSK DSDVI+K+KGTF ERPKK++
Sbjct: 1 RGQAFVIFKELGSATNALRTMQGFPFYDKPMRIQYSKVDSDVIAKLKGTFKERPKKIK-- 58
Query: 110 PAP-VEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAG-VPE 167
AP +P E K K+K A P AP A E
Sbjct: 59 -APKSTNPDEKKAKKQKNASN--------------------------PDAPHANNNSTAE 91
Query: 168 QPPNQILFLTNLPEETSEMMLSMLF 192
QPPNQILFLTNLPEET+EMML MLF
Sbjct: 92 QPPNQILFLTNLPEETNEMMLPMLF 116
>gi|425868393|gb|AFY04327.1| sans fille, partial [Bombylius major]
Length = 115
Score = 149 bits (377), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 82/146 (56%), Positives = 96/146 (65%), Gaps = 32/146 (21%)
Query: 48 KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVR 107
KMRGQAFVIFKEI ATNALR+MQGFPFYDKPMRI Y+KTDSD++++IKGTF ERPKKV+
Sbjct: 1 KMRGQAFVIFKEIGXATNALRTMQGFPFYDKPMRIAYAKTDSDIVARIKGTFKERPKKVK 60
Query: 108 KQ-PAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVP 166
Q PAP ED ++++ +A +V AT
Sbjct: 61 TQKPAPTED--------------------KKEKKKKANNVDSS-----------ATNNAT 89
Query: 167 EQPPNQILFLTNLPEETSEMMLSMLF 192
E PPNQILFLTN PEET+EMMLSMLF
Sbjct: 90 EXPPNQILFLTNXPEETNEMMLSMLF 115
>gi|67515655|ref|XP_657713.1| hypothetical protein AN0109.2 [Aspergillus nidulans FGSC A4]
gi|40746131|gb|EAA65287.1| hypothetical protein AN0109.2 [Aspergillus nidulans FGSC A4]
gi|259489698|tpe|CBF90183.1| TPA: U1 small nuclear ribonucleoprotein, putative (AFU_orthologue;
AFUA_5G11930) [Aspergillus nidulans FGSC A4]
Length = 252
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 89/243 (36%), Positives = 136/243 (55%), Gaps = 39/243 (16%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
VYV ++ LK++L IFS++G I++IVA + LK +GQAF++F + SAT A+
Sbjct: 16 VYVRNLEERIKLDQLKEALSEIFSEYGTILEIVAKRNLKAKGQAFIVFDNVDSATRAIDE 75
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
+ GF +DKPM + Y+KT SD + +G ++ EA K ++ A KE
Sbjct: 76 VNGFDLFDKPMVLDYAKTRSDATVRREGG---------------DEELEAHKRRRLAEKE 120
Query: 130 QARLMQAQQQQMQALSVQQPPVSQP-APPAPM--------------ATAGVPEQ--PPNQ 172
+ + +A + Q + +++PPV P AP P+ A A +P++ PPN+
Sbjct: 121 RRQAHEALEAQKK---LKRPPVGAPEAPGRPVKAAKGAGLKPTSGAAAAVIPDEYLPPNK 177
Query: 173 ILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFK 232
ILFL LP+ + L+ +F +F GF+EVRLVP R IAFVE+ENE + +AK A G
Sbjct: 178 ILFLRELPDTADQGSLTAVFGRFEGFREVRLVPGRKGIAFVEYENESGAISAKEATSGMP 237
Query: 233 ITP 235
+ P
Sbjct: 238 MGP 240
>gi|19113216|ref|NP_596424.1| U1 snRNP-associated protein Usp102 [Schizosaccharomyces pombe
972h-]
gi|74676131|sp|O74968.1|RU1A_SCHPO RecName: Full=U1 small nuclear ribonucleoprotein usp102; Short=U1
snRNP protein usp102
gi|3169094|emb|CAA19287.1| U1 snRNP-associated protein Usp102 [Schizosaccharomyces pombe]
Length = 249
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 83/252 (32%), Positives = 138/252 (54%), Gaps = 51/252 (20%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ +I T LK+ L +F +G+++D+ A KTL+MRGQAFV+F + +A+ AL+
Sbjct: 28 LYIRNIEEKIRLTMLKRILEHLFGSYGKVIDVQARKTLRMRGQAFVVFDNLENASRALKD 87
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
+QG+P Y KPM IQYSK+ SD+I + R+ P +E + +K++++ K
Sbjct: 88 LQGYPLYGKPMMIQYSKSKSDIIVQ------------RESPEEIETRKKDRKNRREMLKR 135
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQ---------------PPNQIL 174
+ L QPA P P VP++ PPN++L
Sbjct: 136 TSAL-------------------QPAAPKPTHKKPVPKRNVGAERKSTINEDLLPPNKVL 176
Query: 175 FLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKIT 234
L N+P+E + +L+ +F F GF+EVR+VP R IAFVE++++ ++ AK G ++
Sbjct: 177 LLQNIPQEVNADVLTQIFEAFSGFQEVRMVPGRRGIAFVEYDSDREATVAKNGTTGMSLS 236
Query: 235 PTHAMKISFAKK 246
+ +K++FA+K
Sbjct: 237 -GNQIKVTFARK 247
>gi|148687025|gb|EDL18972.1| mCG119436 [Mus musculus]
Length = 170
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 86/153 (56%), Positives = 103/153 (67%), Gaps = 13/153 (8%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
I +LKKSLYA FSQFGQI+DI+ ++LKMR QAFVIFKE+ SATNALRSMQGFPFYDK
Sbjct: 24 IKKDELKKSLYAFFSQFGQILDILVSRSLKMRSQAFVIFKEVTSATNALRSMQGFPFYDK 83
Query: 79 PMRIQYSKTDSDVISKIKGTFMERPKKVRKQ-PAPVEDPAEAKKSKKKAAKEQARLMQAQ 137
PMRIQY+KTDSD+I+K+ GTF+ER +K K+ P E PA K + AA A ++ A
Sbjct: 84 PMRIQYAKTDSDIIAKMTGTFVERDRKGEKRKPKSQETPAAKKAVQGGAA---APVVGA- 139
Query: 138 QQQMQALSVQQPPVSQPAPPAPMATAGVPEQPP 170
VQ P P P AP +P QPP
Sbjct: 140 --------VQPVPGMPPMPQAPHIMHRMPGQPP 164
>gi|219121341|ref|XP_002185896.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|209582745|gb|ACI65366.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 226
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 87/241 (36%), Positives = 150/241 (62%), Gaps = 28/241 (11%)
Query: 11 TNFVYVTHIS----STDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNA 66
N +YV ++ LK++LYA+F+++G+++++VAL+ +RGQAFVIF+++ +AT A
Sbjct: 9 NNTLYVKNLDWKVKKNLLKRALYALFTRYGKVLEVVALRKDGLRGQAFVIFEDVQAATAA 68
Query: 67 LRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVE-DPAEAKKSKKK 125
L+++QGFPF+ K + ++Y++ SD I+K G+++ + ++++K E D +EA K
Sbjct: 69 LQALQGFPFFGKDVALEYARETSDRIAKRDGSYVPKARRIKKALDQNETDSSEANKQDNH 128
Query: 126 AAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSE 185
AKE+ S PP + P+P TA PP++ L NLP + +E
Sbjct: 129 QAKEE--------------SAVAPP--EGDMPSPQDTA-----PPSKYLLAQNLPSDCNE 167
Query: 186 MMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAK 245
MML MLF Q+ G+KEVR+ R +AF+EFE+E + A+ AL+GFK+T + ++++ + K
Sbjct: 168 MMLGMLFRQYSGYKEVRMP--RPGLAFIEFEDEPHATLARNALNGFKLTTSESLQLGYGK 225
Query: 246 K 246
+
Sbjct: 226 E 226
>gi|345313966|ref|XP_001517530.2| PREDICTED: hypothetical protein LOC100087647 [Ornithorhynchus
anatinus]
Length = 403
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 67/87 (77%), Positives = 81/87 (93%)
Query: 23 DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRI 82
+LKKSLYAIFSQFGQI+DI+ ++LKMRGQAFVIFKE+ SATNALRSMQGFPFYDKPMRI
Sbjct: 188 ELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVNSATNALRSMQGFPFYDKPMRI 247
Query: 83 QYSKTDSDVISKIKGTFMERPKKVRKQ 109
QY+K+DSD+ISK+KGT++ER +K K+
Sbjct: 248 QYAKSDSDIISKMKGTYVERDRKREKR 274
>gi|170103054|ref|XP_001882742.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164642113|gb|EDR06370.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 243
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 86/225 (38%), Positives = 130/225 (57%), Gaps = 17/225 (7%)
Query: 24 LKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83
LK SL +F +G+++D+VA L+MRGQAFV F A A++ +Q FP Y KPM+I
Sbjct: 34 LKASLRGLFKSYGEVLDVVAHNNLRMRGQAFVSFASPEVAKKAMKEVQRFPLYSKPMQIS 93
Query: 84 YSKTDSD-VISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQ 142
++KT SD V+ +I G + K R E+ + + + +K +A+ + A+
Sbjct: 94 FAKTRSDAVVKRIDGANFDGHKATRD-----ENKKKTRYTNPVKSKFRAKRLAAEIDGAA 148
Query: 143 AL-SVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEV 201
AL +V++P V P PPN+ILFL NLPE ++ L LF+Q+P EV
Sbjct: 149 ALPAVKRPNVQMPDE----------YLPPNKILFLQNLPESVTKEQLLGLFSQYPNLYEV 198
Query: 202 RLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
RL+P + DIAFVE+ +E + AK ALH FK+ + +KI++A+K
Sbjct: 199 RLIPTKRDIAFVEYMDEGSAGVAKDALHNFKLDGENKIKITYARK 243
>gi|449541608|gb|EMD32591.1| hypothetical protein CERSUDRAFT_118631 [Ceriporiopsis subvermispora
B]
Length = 272
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 84/225 (37%), Positives = 130/225 (57%), Gaps = 17/225 (7%)
Query: 24 LKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83
LK+SL ++F +G+++D+VA L+MRGQAFV F SA AL+ ++GFP Y KPM+I
Sbjct: 63 LKQSLRSLFKTYGEVLDVVAHSNLRMRGQAFVSFDSAESAQKALKEVRGFPLYSKPMQIS 122
Query: 84 YSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQA 143
++++ SD + K K R+ +E + + + K + R + A+ A
Sbjct: 123 FARSRSDAVVKRLDANNYDAHKARR----MEQKKQTRYTNPLKRKFRQRRLAAEVDGAGA 178
Query: 144 LSVQQPPVSQPAPPAPMATAGVPEQ--PPNQILFLTNLPEETSEMMLSMLFNQFPGFKEV 201
+ V + P Q +P++ PPN+ILFL NLPE S+ L LF+Q+P EV
Sbjct: 179 VPVSKRPNVQ-----------MPDEYLPPNKILFLQNLPESVSKDQLMALFSQYPNLHEV 227
Query: 202 RLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
RL+P + DIAFVE+ +E + AK ALH +K+ + +KI+FA+K
Sbjct: 228 RLIPTKKDIAFVEYLDEGSATVAKEALHNYKLDGENKIKITFARK 272
>gi|189339509|pdb|2K3K|A Chain A, Solution Structure Of Drosophila Melanogaster Snf Rbd1
Length = 104
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 68/79 (86%), Positives = 76/79 (96%)
Query: 27 SLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSK 86
SLYAIFSQFGQI+DIVALKTLKMRGQAFVIFKEI SA+NALR+MQGFPFYDKPM+I YSK
Sbjct: 26 SLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIGSASNALRTMQGFPFYDKPMQIAYSK 85
Query: 87 TDSDVISKIKGTFMERPKK 105
+DSD+++KIKGTF ERPKK
Sbjct: 86 SDSDIVAKIKGTFKERPKK 104
>gi|392597982|gb|EIW87304.1| RNA binding protein [Coniophora puteana RWD-64-598 SS2]
Length = 263
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 81/227 (35%), Positives = 130/227 (57%), Gaps = 21/227 (9%)
Query: 24 LKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83
+K+SL ++F +G+++D+VA L+MRGQAFV F+ A A+ ++GFP Y+KPM+I
Sbjct: 54 IKQSLRSLFKTYGEVLDVVAHSNLRMRGQAFVSFESPEVAKKAMEEVRGFPLYNKPMQIS 113
Query: 84 YSKTDSD-VISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQ 142
++++ SD V+ K+ + A K+++ K+ R +Q+++
Sbjct: 114 FARSRSDAVVKKLDAEHFD-----------------AHKAQRDEHKKNTRYTNPLKQKLR 156
Query: 143 ALSVQQPPVSQPAPPA-PMATAGVPEQ--PPNQILFLTNLPEETSEMMLSMLFNQFPGFK 199
A + A PA +P++ PPN+ILFL NLPE + L+ LF Q+P
Sbjct: 157 AKRMATDIDGAAAAPAVKRPNVQMPDEYLPPNKILFLQNLPENVDKEQLTTLFTQYPNLH 216
Query: 200 EVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
EVRL+P + DIAFVEF +E + AK ALH +K+ + +KI+FA+K
Sbjct: 217 EVRLIPTKKDIAFVEFVDEASAGVAKDALHNYKLDGENKIKITFARK 263
>gi|351712556|gb|EHB15475.1| U2 small nuclear ribonucleoprotein B'' [Heterocephalus glaber]
Length = 143
Score = 147 bits (371), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 85/167 (50%), Positives = 104/167 (62%), Gaps = 24/167 (14%)
Query: 80 MRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQ 139
MRIQY+KTDSD+ISK++GTF ++ KK K+ A + +KK Q
Sbjct: 1 MRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTATTANKKPGQGTSTTDTQGN-- 58
Query: 140 QMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFK 199
A P P VP+ PP ILFL NLPEET+E+ML FNQFPGFK
Sbjct: 59 ---------------ATPNPQ----VPDYPPKYILFLNNLPEETNEVML---FNQFPGFK 96
Query: 200 EVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
E+ LVP RHDIAFVEFEN+ Q+ AA+ AL GFKITP+HAMKI++AKK
Sbjct: 97 EIHLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 143
>gi|302673457|ref|XP_003026415.1| hypothetical protein SCHCODRAFT_35516 [Schizophyllum commune H4-8]
gi|300100097|gb|EFI91512.1| hypothetical protein SCHCODRAFT_35516, partial [Schizophyllum
commune H4-8]
Length = 230
Score = 147 bits (370), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 82/222 (36%), Positives = 129/222 (58%), Gaps = 21/222 (9%)
Query: 24 LKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83
+K++L +F +G+++D+VA + L+MRGQAFV F ++ SA A R ++GFP Y KPM+I
Sbjct: 26 MKQTLRTLFKTYGEVLDVVAHRNLRMRGQAFVSFADVNSARRAAREVRGFPLYTKPMQIS 85
Query: 84 YSKTDSD-VISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQ 142
+++T SD V+ K+ + + KK R++ K + R +Q+++
Sbjct: 86 FARTRSDAVVKKLDESQFDDHKKRREE-----------------HKRKTRYTNPLKQKLK 128
Query: 143 A--LSVQQPPVSQ-PAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFK 199
A L++ VS PA P PPN+ILFL NLPE S+ L+ LF+Q+P
Sbjct: 129 AKRLALASDGVSHLPATRRPNVLMPDEYLPPNKILFLQNLPETVSKDQLTALFSQYPNLH 188
Query: 200 EVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKI 241
EVR+VP + DIAFVE+ +E + AK ALH +K+ + +K+
Sbjct: 189 EVRMVPTKKDIAFVEYYDEASATNAKDALHNYKMDGENKIKV 230
>gi|425868409|gb|AFY04335.1| sans fille, partial [Megaselia scalaris]
Length = 113
Score = 147 bits (370), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 83/145 (57%), Positives = 94/145 (64%), Gaps = 32/145 (22%)
Query: 48 KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVR 107
KMRGQAFVIFKEI SA+NALR+MQGFPFYDKPMRI YSKTDSDV++K+KGTF ERPKKV
Sbjct: 1 KMRGQAFVIFKEIGSASNALRTMQGFPFYDKPMRIAYSKTDSDVVAKLKGTFKERPKKV- 59
Query: 108 KQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPE 167
K P KAA E+ + + + A + E
Sbjct: 60 KLP--------------KAAPEEKKDKKKKTSN-----------------ADNSANSTAE 88
Query: 168 QPPNQILFLTNLPEETSEMMLSMLF 192
QPPNQILFLTNLPEET+EMMLSMLF
Sbjct: 89 QPPNQILFLTNLPEETNEMMLSMLF 113
>gi|346977343|gb|EGY20795.1| U1 small nuclear ribonucleoprotein A [Verticillium dahliae VdLs.17]
Length = 246
Score = 147 bits (370), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 87/257 (33%), Positives = 142/257 (55%), Gaps = 32/257 (12%)
Query: 5 LAHICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASAT 64
+A + V N I LK+SL IFS++G +++I+A LK +GQAF++F + SA
Sbjct: 7 IATVYVRNLEERVKIDV--LKESLLQIFSEYGNVLEIIAKTNLKSKGQAFIVFDDADSAQ 64
Query: 65 NALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKK 124
NA+ +QGF +DKPM++ +KT SD K +G+ E+ EA + ++
Sbjct: 65 NAIDEVQGFQLFDKPMQVALAKTRSDATVKTQGS---------------EEDFEAHRRRR 109
Query: 125 KAAKEQARLMQA--QQQQMQ--ALSVQQPPVSQPAPPA---------PMATAGVPEQ--P 169
A K++ R ++A +Q++MQ +PA A P A++ VP++ P
Sbjct: 110 LAEKDKKRALEAAEEQKRMQRSGAGAATDAAGRPAKAARGAGLKSSNPAASSVVPDEYLP 169
Query: 170 PNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALH 229
PN+ILF+ NLPE+ L+ +F +F GF+EVRLVP R IAFVE++ E + AK
Sbjct: 170 PNKILFIQNLPEDFDIEALTDIFGRFDGFREVRLVPGRRGIAFVEYDGEQGAITAKENTA 229
Query: 230 GFKITPTHAMKISFAKK 246
G + + +K+++ ++
Sbjct: 230 GMVLGESSTIKVTYQRQ 246
>gi|392570636|gb|EIW63808.1| RNA-binding domain-containing protein [Trametes versicolor
FP-101664 SS1]
Length = 281
Score = 146 bits (368), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 85/227 (37%), Positives = 127/227 (55%), Gaps = 21/227 (9%)
Query: 24 LKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83
LK SL +F +G+++D+VA L+MRGQAFV F + A AL+ ++GFP Y KPM+I
Sbjct: 72 LKASLRGLFKSYGEVLDVVAHSNLRMRGQAFVSFADADVAKKALKEVRGFPLYTKPMQIS 131
Query: 84 YSKTDSD-VISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQ-AQQQQM 141
+++T SD V+ K+ ED ++ K K+ K+ R +++
Sbjct: 132 FARTRSDAVVKKLD-----------------EDNFDSHKEKRLEHKKATRYTNPIKKKYR 174
Query: 142 QALSVQQPPVSQPAPPAPMATAGVPEQ--PPNQILFLTNLPEETSEMMLSMLFNQFPGFK 199
Q + AP A +P++ PPN+ILFL NLP+ S+ L LF Q+P
Sbjct: 175 QKRLAAEMDGGAAAPAAKRPNVQMPDEYLPPNKILFLQNLPKNVSKDQLMALFAQYPNLH 234
Query: 200 EVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
EVRL+P + DIAFVEF +E + AK ALH +K+ + +KI+FA+K
Sbjct: 235 EVRLIPTKKDIAFVEFLDEASATVAKDALHNYKLDGENKIKITFARK 281
>gi|299742799|ref|XP_001832784.2| RNA binding protein [Coprinopsis cinerea okayama7#130]
gi|298405354|gb|EAU89029.2| RNA binding protein [Coprinopsis cinerea okayama7#130]
Length = 257
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 88/229 (38%), Positives = 126/229 (55%), Gaps = 25/229 (10%)
Query: 24 LKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83
LK +L +F +G ++D+VA L+MRGQAFV F+ A A+R +Q FP Y KPM+I
Sbjct: 48 LKTTLRGLFKTYGPVLDVVAHSNLRMRGQAFVSFESADIAEKAMREVQRFPLYSKPMQIS 107
Query: 84 YSKTDSDVISKIKGTFMERPKKVR----KQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQ 139
++KT SD + K K K R K+ +P +AK K+ A + A
Sbjct: 108 FAKTRSDAVVKQKDAENFDSHKARREEHKKATRYTNPVKAKFKAKRLAADVDGGAAAPAA 167
Query: 140 QMQALSVQQPPVSQPAPPAPMATAGVPEQ--PPNQILFLTNLPEETSEMMLSMLFNQFPG 197
+ QA+ + P++ PPN+ILF+ NLPE ++ L+ LF+Q+P
Sbjct: 168 KRQAIQM-------------------PDEYLPPNKILFVQNLPESVTKDQLTTLFSQYPN 208
Query: 198 FKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
EVRL+P + DIAFVEF +E S AK ALH FKI + +KI+FA+K
Sbjct: 209 LYEVRLIPTKKDIAFVEFLDEASSGVAKDALHNFKIDGENKIKITFARK 257
>gi|213510744|ref|NP_001134742.1| U1 small nuclear ribonucleoprotein A [Salmo salar]
gi|209735590|gb|ACI68664.1| U1 small nuclear ribonucleoprotein A [Salmo salar]
Length = 281
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 73/115 (63%), Positives = 93/115 (80%), Gaps = 6/115 (5%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LKKSLYAIFSQFGQI+DI+ ++LKMRGQAFVIFKE+ SA+NALRS
Sbjct: 12 IYINNLNEKIKKDELKKSLYAIFSQFGQILDILVARSLKMRGQAFVIFKEVNSASNALRS 71
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKK 124
MQGFPFYDKPMRI Y+K DSD+I+K+KGT++ER +K K+ A V+ P EA +KK
Sbjct: 72 MQGFPFYDKPMRIGYAKGDSDIIAKMKGTYVERDRKKEKR-AKVKGP-EAAGAKK 124
>gi|212529314|ref|XP_002144814.1| U1 small nuclear ribonucleoprotein, putative [Talaromyces marneffei
ATCC 18224]
gi|210074212|gb|EEA28299.1| U1 small nuclear ribonucleoprotein, putative [Talaromyces marneffei
ATCC 18224]
Length = 254
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 91/242 (37%), Positives = 128/242 (52%), Gaps = 34/242 (14%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
VYV ++ DLK++L IFS++G I++IVA K LK +GQAF++F + SA A+
Sbjct: 17 VYVHNLEERVKIDDLKEALTEIFSEYGTILEIVAKKNLKAKGQAFIVFDNVESAQRAIEE 76
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
+ GF KPM + ++KT SD +G D E K K+ A KE
Sbjct: 77 VNGFDLLGKPMSLDFAKTRSDATVLREGG---------------SDELEVHKRKRLAEKE 121
Query: 130 QARLMQAQQQQMQALSVQQPPV----SQPA---------PPAPMATAGVPEQ--PPNQIL 174
+ + +A + Q + PV +PA P ATA VP++ PPN+IL
Sbjct: 122 RKQAQEALEAQKKLKRPAGVPVPAEAGRPAKAARGTGLKPTTGAATAVVPDEYLPPNKIL 181
Query: 175 FLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKIT 234
FL LPE+ ML+ +F +F GF+EVRLVP R IAFVE+ENE + +AK A G +
Sbjct: 182 FLRELPEDADADMLTSIFGRFEGFREVRLVPGRKGIAFVEYENETGAISAKEATSGMPMG 241
Query: 235 PT 236
P
Sbjct: 242 PN 243
>gi|393218308|gb|EJD03796.1| RNA-binding domain-containing protein [Fomitiporia mediterranea
MF3/22]
Length = 279
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 83/246 (33%), Positives = 136/246 (55%), Gaps = 24/246 (9%)
Query: 9 CVTNFVYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASAT 64
VT +Y+ +++ +K++L+A+F +G ++D+VA + L+MRGQAFV F + + A
Sbjct: 50 VVTETLYIQNLNERIKLNVMKQTLHALFLNYGDVLDVVAHRNLRMRGQAFVSFADASIAK 109
Query: 65 NALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKK 124
A R + FP Y KPM+I +++T SD + K D + K+ +
Sbjct: 110 KAQREVNRFPLYSKPMQISFARTRSDAVVKTVDL----------------DHFDQHKAAR 153
Query: 125 KAAKEQARLMQAQQQQMQA--LSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEE 182
K++ R +++ +A L+ + + PAP P PPN+ILFL NLPE
Sbjct: 154 LEHKKKTRYNNPLKRKFRARRLAEKMDGAALPAPKRPAVQMPDEYLPPNKILFLQNLPES 213
Query: 183 TSEM--MLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMK 240
++ L LF+Q+P +VRL+P + DIAFVE+ +E + AAK ALH +K+ H +K
Sbjct: 214 VTDSKDQLLALFSQYPNLHDVRLIPTKKDIAFVEYSDEASATAAKDALHNYKLDGEHKIK 273
Query: 241 ISFAKK 246
I++A+K
Sbjct: 274 ITYARK 279
>gi|351707543|gb|EHB10462.1| U1 small nuclear ribonucleoprotein A [Heterocephalus glaber]
Length = 242
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 94/202 (46%), Positives = 121/202 (59%), Gaps = 25/202 (12%)
Query: 32 FSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDV 91
+FGQI+DI+ ++L MR QAFV ++ATN L SMQ FPFYDKPM IQY+KT+SD+
Sbjct: 9 LKKFGQILDILVSRSLMMRNQAFV-----SNATNVLCSMQEFPFYDKPMCIQYAKTNSDI 63
Query: 92 ISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQM---QALSVQQ 148
I K+KGTF+E K K+ + K +K + RL M L+ Q
Sbjct: 64 IVKMKGTFVEWDHKWEKR--------KPKNQEKLLPRRLWRLPYMLPPGMIPPPGLTPGQ 115
Query: 149 -PPVSQPAP---PAPMATAG-VPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRL 203
PP + P+ P MA A + + PPN ILFLT PEET+E+M S+LFNQFPGFK+V L
Sbjct: 116 IPPGAMPSQQLMPGQMAPAQPLWDNPPNHILFLTKQPEETNELMSSLLFNQFPGFKKVCL 175
Query: 204 VPNRHD----IAFVEFENEMQS 221
P R + I FVEF NE+ S
Sbjct: 176 KPGRDNITLYITFVEFNNEVLS 197
>gi|422294869|gb|EKU22169.1| U2 small nuclear ribonucleoprotein B'', partial [Nannochloropsis
gaditana CCMP526]
Length = 289
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 81/228 (35%), Positives = 130/228 (57%), Gaps = 20/228 (8%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
++ LKK LY FS +G+++DIVA + +RGQA+V+F + SAT ALRS+QGFPF K
Sbjct: 82 LNKVSLKKLLYLAFSAYGRVIDIVACRGESLRGQAWVVFDSVGSATTALRSLQGFPFLGK 141
Query: 79 PMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQ 138
PMRIQ++K S+ ++ +GT+ +P K KKK +E +L ++
Sbjct: 142 PMRIQFAKGKSNAVALREGTY---------EPGSKRRKRGEKDGKKK--EESQKLSGSRD 190
Query: 139 QQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGF 198
+ + ++ + +A V + +L LP E +E ML++LF +F GF
Sbjct: 191 EGKRG---KEAEAEEHVAGMALAAGEV-----SSMLMAQELPTECTEEMLAVLFRRFAGF 242
Query: 199 KEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
E+RL R IAF+EF +E+ + A A +GFK++ T A+K+++AK+
Sbjct: 243 HEIRLAGQR-GIAFIEFRDEVSARTAFQAYNGFKLSQTDALKLTYAKR 289
>gi|115387505|ref|XP_001211258.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114195342|gb|EAU37042.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 254
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 85/228 (37%), Positives = 129/228 (56%), Gaps = 33/228 (14%)
Query: 18 HISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYD 77
I +LK++L IFS++G I++IVA LK +GQAF++F + SAT A+ + GF +D
Sbjct: 28 RIKVDNLKEALSEIFSEYGNILEIVAKTNLKAKGQAFIVFDNVESATRAIDEINGFELFD 87
Query: 78 KPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQ 137
KPM + Y+KT SD +G ED E K ++ A KE+ + +A
Sbjct: 88 KPMVLDYAKTRSDATVLREGG---------------EDELEVHKRRRLAEKERKQAHEAL 132
Query: 138 QQQMQALSVQQPP----VSQPA---------PPAPMATAGVPEQ--PPNQILFLTNLPEE 182
+ Q + +++PP ++PA P + A A +P++ PPN+ILFL +LP+
Sbjct: 133 EAQKK---LKRPPGAPEAARPAKTAKGAGLKPTSGAAAAVIPDEYLPPNKILFLRDLPDN 189
Query: 183 TSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHG 230
+ L+ +F +F GF+EVRLVP R IAFVE+ENE + +AK A G
Sbjct: 190 ADQDSLTAVFGRFEGFQEVRLVPGRKGIAFVEYENESGAISAKEATSG 237
>gi|212529316|ref|XP_002144815.1| U1 small nuclear ribonucleoprotein, putative [Talaromyces marneffei
ATCC 18224]
gi|210074213|gb|EEA28300.1| U1 small nuclear ribonucleoprotein, putative [Talaromyces marneffei
ATCC 18224]
Length = 253
Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 91/244 (37%), Positives = 128/244 (52%), Gaps = 34/244 (13%)
Query: 12 NFVYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNAL 67
N YV ++ DLK++L IFS++G I++IVA K LK +GQAF++F + SA A+
Sbjct: 14 NPTYVHNLEERVKIDDLKEALTEIFSEYGTILEIVAKKNLKAKGQAFIVFDNVESAQRAI 73
Query: 68 RSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAA 127
+ GF KPM + ++KT SD +G D E K K+ A
Sbjct: 74 EEVNGFDLLGKPMSLDFAKTRSDATVLREGG---------------SDELEVHKRKRLAE 118
Query: 128 KEQARLMQAQQQQMQALSVQQPPV----SQPA---------PPAPMATAGVPEQ--PPNQ 172
KE+ + +A + Q + PV +PA P ATA VP++ PPN+
Sbjct: 119 KERKQAQEALEAQKKLKRPAGVPVPAEAGRPAKAARGTGLKPTTGAATAVVPDEYLPPNK 178
Query: 173 ILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFK 232
ILFL LPE+ ML+ +F +F GF+EVRLVP R IAFVE+ENE + +AK A G
Sbjct: 179 ILFLRELPEDADADMLTSIFGRFEGFREVRLVPGRKGIAFVEYENETGAISAKEATSGMP 238
Query: 233 ITPT 236
+ P
Sbjct: 239 MGPN 242
>gi|317150456|ref|XP_001824039.2| U1 small nuclear ribonucleoprotein usp102 [Aspergillus oryzae
RIB40]
Length = 251
Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 89/236 (37%), Positives = 134/236 (56%), Gaps = 37/236 (15%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
VYV ++ LK++L IFS++G ++DIVA LK +GQAF++F + SA+NA+
Sbjct: 17 VYVRNLEERVKVDQLKEALEEIFSEYGNVIDIVAKTNLKAKGQAFIVFDSVESASNAIDE 76
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
+ GF +DKPM + ++KT SD +G ED EA K ++ A KE
Sbjct: 77 INGFELFDKPMVLDFAKTRSDATVLREGG---------------EDELEAHKRRRLAEKE 121
Query: 130 QARLMQAQQQQMQALSVQQPP----VSQPA--------PPAPMATAGV-PEQ--PPNQIL 174
+ + +A + Q + +++PP ++PA P ATA V P++ PPN+IL
Sbjct: 122 RKQAHEALEAQKK---LKRPPGAPDSTRPAKTAKGAGLKPTSGATAAVIPDEYLPPNKIL 178
Query: 175 FLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHG 230
FL +LP+ + L+ +F +F GF+EVRLVP R IAFVE+ENE + +AK A G
Sbjct: 179 FLRDLPDTADQESLTAVFGRFEGFQEVRLVPGRKGIAFVEYENESGAISAKEATSG 234
>gi|149041255|gb|EDL95188.1| rCG27500, isoform CRA_a [Rattus norvegicus]
Length = 132
Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/82 (80%), Positives = 74/82 (90%)
Query: 165 VPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAA 224
VP+ PPN ILFL NLPEET+EMMLSMLFNQFPGFKEVRLVP RHDIAFVEFEN+ Q+ AA
Sbjct: 51 VPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAA 110
Query: 225 KLALHGFKITPTHAMKISFAKK 246
+ AL GFKITP+HAMKI++AKK
Sbjct: 111 RDALQGFKITPSHAMKITYAKK 132
>gi|840823|emb|CAA44752.1| U2-snRNP-specific b'' [Mus musculus]
Length = 123
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 66/82 (80%), Positives = 74/82 (90%)
Query: 165 VPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAA 224
VP+ PPN ILFL NLPEET+EMMLSMLFNQFPGFKEVRLVP RHDIAFVEFEN+ Q+ AA
Sbjct: 42 VPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAA 101
Query: 225 KLALHGFKITPTHAMKISFAKK 246
+ AL GFKITP+HAMKI++AKK
Sbjct: 102 RDALQGFKITPSHAMKITYAKK 123
>gi|345570654|gb|EGX53475.1| hypothetical protein AOL_s00006g341 [Arthrobotrys oligospora ATCC
24927]
Length = 255
Score = 143 bits (361), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 89/238 (37%), Positives = 136/238 (57%), Gaps = 19/238 (7%)
Query: 24 LKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83
L +L +FSQ+G I++I+A K L+ RGQAFV+F +A A++ +QGF ++KPM +Q
Sbjct: 22 LTATLETLFSQYGTILEIIAKKNLRARGQAFVVFDSPEAAERAIKEVQGFNLFEKPMVLQ 81
Query: 84 YSKTDSDVISKIKGTFMERPKKVRKQPAPVE-----DPAEAKKSKKKAAKE------QAR 132
Y+KT SD +++ + E R++ A E AEA+K K+ A A
Sbjct: 82 YAKTKSDATVQLESSETEFEAHKRRRLAEKERKQALRAAEAQKHLKRPAASGPSQGIGAD 141
Query: 133 LMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQ--PPNQILFLTNLPEETSEMMLSM 190
A++ Q+ A S S AP AP +P++ PPN+ILFL NLP+ + +L+
Sbjct: 142 SRPAKKTQISAPSAPGGLKSTAAPAAPQ----IPDEYLPPNKILFLQNLPDNATSDILNG 197
Query: 191 LFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHA--MKISFAKK 246
+F F GFKEVRLVP R IAFVE+ENE + +AK G + P + +K+++ ++
Sbjct: 198 IFGSFEGFKEVRLVPGRKGIAFVEYENEAGAISAKENTQGMSLGPDGSGIVKVTYQRQ 255
>gi|429864037|gb|ELA38421.1| u1 small nuclear [Colletotrichum gloeosporioides Nara gc5]
Length = 247
Score = 143 bits (361), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 87/254 (34%), Positives = 135/254 (53%), Gaps = 37/254 (14%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
VYV ++ LK +L IFS++G ++DIVA L+ +GQAFV+F SA A+
Sbjct: 10 VYVRNLEERAKIDQLKDALLQIFSEYGNVLDIVAKSNLRAKGQAFVVFDSPESAQKAIDD 69
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
+QGF +DKPM++ ++T SD K G E+ E K ++ A K+
Sbjct: 70 VQGFELFDKPMQLALARTRSDATVKTTGN---------------EEEFELHKRRRLAEKD 114
Query: 130 QARLMQAQQQQMQALSVQQPPVSQP---APPA------------PMATAGVPEQ--PPNQ 172
+ R +A ++Q + L P S P PA P ATA VP++ PPN+
Sbjct: 115 KKRAYEAAEEQKR-LKRSGPAGSVPDMTGRPAKAARGTGLKSTNPSATAVVPDEYLPPNK 173
Query: 173 ILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFK 232
ILF+ NLP++ ++ +F +F GF+EVRLVP R IAFVE++ E + AK G
Sbjct: 174 ILFVQNLPDDYDIEAVTSIFGRFEGFREVRLVPGRRGIAFVEYDGEQGAITAKENTAGMV 233
Query: 233 ITPTHAMKISFAKK 246
+ +H +K+++ ++
Sbjct: 234 LGDSHTIKVTYQRQ 247
>gi|355721048|gb|AES07135.1| small nuclear ribonucleoprotein polypeptide B [Mustela putorius
furo]
Length = 99
Score = 143 bits (361), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 66/82 (80%), Positives = 74/82 (90%)
Query: 165 VPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAA 224
VP+ PPN ILFL NLPEET+EMMLSMLFNQFPGFKEVRLVP RHDIAFVEFEN+ Q+ AA
Sbjct: 18 VPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAA 77
Query: 225 KLALHGFKITPTHAMKISFAKK 246
+ AL GFKITP+HAMKI++AKK
Sbjct: 78 RDALQGFKITPSHAMKITYAKK 99
>gi|90103266|gb|ABD85478.1| small nuclear ribonucleoprotein polypeptide A [Ictalurus punctatus]
Length = 156
Score = 143 bits (361), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 86/165 (52%), Positives = 109/165 (66%), Gaps = 20/165 (12%)
Query: 10 VTNFVYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATN 65
+ + +Y+ + I +LKKSLYAIFSQFGQI+DI+ +T+KMRGQAFVIFKE+ SA+N
Sbjct: 8 LNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVARTVKMRGQAFVIFKEVNSASN 67
Query: 66 ALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKK 125
ALRSMQGFPFYDKPMRIQY+K DSD+I+K+KGT++ER RK+ E+ SKK
Sbjct: 68 ALRSMQGFPFYDKPMRIQYAKQDSDIIAKMKGTYVERD---RKKEKKKPKTTESGGSKKG 124
Query: 126 AAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPP 170
AA A + A M + PP+SQ PM P QPP
Sbjct: 125 AAAGMAGVPAA----MPGM----PPMSQAPRMMPM-----PGQPP 156
>gi|83772778|dbj|BAE62906.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 248
Score = 143 bits (361), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 86/222 (38%), Positives = 129/222 (58%), Gaps = 33/222 (14%)
Query: 24 LKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83
LK++L IFS++G ++DIVA LK +GQAF++F + SA+NA+ + GF +DKPM +
Sbjct: 28 LKEALEEIFSEYGNVIDIVAKTNLKAKGQAFIVFDSVESASNAIDEINGFELFDKPMVLD 87
Query: 84 YSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQA 143
++KT SD +G ED EA K ++ A KE+ + +A + Q +
Sbjct: 88 FAKTRSDATVLREGG---------------EDELEAHKRRRLAEKERKQAHEALEAQKK- 131
Query: 144 LSVQQPP----VSQPA--------PPAPMATAGV-PEQ--PPNQILFLTNLPEETSEMML 188
+++PP ++PA P ATA V P++ PPN+ILFL +LP+ + L
Sbjct: 132 --LKRPPGAPDSTRPAKTAKGAGLKPTSGATAAVIPDEYLPPNKILFLRDLPDTADQESL 189
Query: 189 SMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHG 230
+ +F +F GF+EVRLVP R IAFVE+ENE + +AK A G
Sbjct: 190 TAVFGRFEGFQEVRLVPGRKGIAFVEYENESGAISAKEATSG 231
>gi|317037176|ref|XP_001398705.2| U1 small nuclear ribonucleoprotein usp102 [Aspergillus niger CBS
513.88]
Length = 251
Score = 143 bits (360), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 89/237 (37%), Positives = 135/237 (56%), Gaps = 38/237 (16%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
VYV + I LK++L IFS++G +++IVA LK +GQAFV+F + +AT A+
Sbjct: 16 VYVRNLEERIKVDQLKEALEEIFSEYGTVLEIVAKTNLKAKGQAFVVFDTVEAATRAIDE 75
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
+ GF +DKPM + Y+KT SD+ +G ED EA K ++ A KE
Sbjct: 76 INGFELFDKPMVLDYAKTRSDMTVLREGG---------------EDELEAHKRRRLAEKE 120
Query: 130 QARLMQAQQQQMQALSVQQPPV--SQPAPPAPMA-------TAG-----VPEQ--PPNQI 173
+ + +A + Q + +++PP ++P PA A T+G +P++ PPN+I
Sbjct: 121 RKQAHEALEAQKK---LKRPPGAPTEPGRPAKTAKGAGLKPTSGAAAAVIPDEYLPPNKI 177
Query: 174 LFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHG 230
LFL +LP+ + L+ +F +F GF+EVRLVP R IAFVE+ENE + +AK A G
Sbjct: 178 LFLRDLPDTADQDSLTAVFGRFEGFQEVRLVPGRKGIAFVEYENESGAISAKEATSG 234
>gi|297716585|ref|XP_002834591.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like, partial
[Pongo abelii]
Length = 99
Score = 143 bits (360), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 65/82 (79%), Positives = 74/82 (90%)
Query: 165 VPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAA 224
+P+ PPN ILFL NLPEET+EMMLSMLFNQFPGFKEVRLVP RHDIAFVEFEN+ Q+ AA
Sbjct: 18 IPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAA 77
Query: 225 KLALHGFKITPTHAMKISFAKK 246
+ AL GFKITP+HAMKI++AKK
Sbjct: 78 RDALQGFKITPSHAMKITYAKK 99
>gi|426200920|gb|EKV50843.1| hypothetical protein AGABI2DRAFT_189187 [Agaricus bisporus var.
bisporus H97]
Length = 292
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 81/226 (35%), Positives = 129/226 (57%), Gaps = 19/226 (8%)
Query: 24 LKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83
L+ +L +F +G ++D+VA ++MRGQAFV F + SA A++ +Q FP Y KPM+I
Sbjct: 83 LQATLRGLFKSYGDVLDVVAHGNMRMRGQAFVSFDSVDSARKAMKDVQRFPLYSKPMQIT 142
Query: 84 YSKTDSD-VISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQ 142
++KT SD V+ K+ ++ K+ R E + + +K + + M A+
Sbjct: 143 FAKTRSDAVVKKLDAESYDQHKQRRD-----EHKKATRYTNPIKSKFRLKRMAAEMDGGA 197
Query: 143 ALSVQQPPVSQPAPPAPMATAGVPEQ--PPNQILFLTNLPEETSEMMLSMLFNQFPGFKE 200
AL + P Q +P++ PPN+ILFL NLPE ++ L LF+Q+P E
Sbjct: 198 ALPQSKRPAVQ-----------MPDEYLPPNKILFLQNLPESVTKDQLMSLFSQYPNLYE 246
Query: 201 VRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
VR++P + DIAFVE+ +E + AK ALH +K+ + +KI+FA+K
Sbjct: 247 VRMIPTKKDIAFVEYVDEGSAGVAKDALHNYKLDGENKIKITFARK 292
>gi|74354072|gb|AAI02329.1| SNRPB2 protein [Bos taurus]
Length = 106
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 64/96 (66%), Positives = 82/96 (85%), Gaps = 4/96 (4%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LK+SLYA+FSQFG ++DIVALKT+KMRGQAFVIFKE+ S+TNALR
Sbjct: 9 IYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQ 68
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKK 105
+QGFPFY KPMRIQY+KTDSD+ISK++GTF ++ KK
Sbjct: 69 LQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKK 104
>gi|409084026|gb|EKM84383.1| hypothetical protein AGABI1DRAFT_110905 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 292
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 81/226 (35%), Positives = 129/226 (57%), Gaps = 19/226 (8%)
Query: 24 LKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83
L+ +L +F +G ++D+VA ++MRGQAFV F + SA A++ +Q FP Y KPM+I
Sbjct: 83 LQATLRGLFKSYGDVLDVVAHGNMRMRGQAFVSFDSVDSARKAMKDVQRFPLYSKPMQIT 142
Query: 84 YSKTDSD-VISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQ 142
++KT SD V+ K+ ++ K+ R E + + +K + + M A+
Sbjct: 143 FAKTRSDAVVKKLDAESYDQHKQRRD-----EHKKATRYTNPIKSKFRLKRMAAEMDGGA 197
Query: 143 ALSVQQPPVSQPAPPAPMATAGVPEQ--PPNQILFLTNLPEETSEMMLSMLFNQFPGFKE 200
AL + P Q +P++ PPN+ILFL NLPE ++ L LF+Q+P E
Sbjct: 198 ALPQSKRPAVQ-----------MPDEYLPPNKILFLQNLPESVTKDQLMSLFSQYPNLYE 246
Query: 201 VRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
VR++P + DIAFVE+ +E + AK ALH +K+ + +KI+FA+K
Sbjct: 247 VRMIPTKKDIAFVEYVDEGSAGVAKDALHNYKLDGENKIKITFARK 292
>gi|350630544|gb|EHA18916.1| hypothetical protein ASPNIDRAFT_42727 [Aspergillus niger ATCC 1015]
Length = 249
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 86/229 (37%), Positives = 131/229 (57%), Gaps = 34/229 (14%)
Query: 18 HISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYD 77
I LK++L IFS++G +++IVA LK +GQAFV+F + +AT A+ + GF +D
Sbjct: 22 RIKVDQLKEALEEIFSEYGTVLEIVAKTNLKAKGQAFVVFDTVEAATRAIDEINGFELFD 81
Query: 78 KPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQ 137
KPM + Y+KT SD+ +G ED EA K ++ A KE+ + +A
Sbjct: 82 KPMVLDYAKTRSDMTVLREGG---------------EDELEAHKRRRLAEKERKQAHEAL 126
Query: 138 QQQMQALSVQQPPV--SQPAPPAPMA-------TAG-----VPEQ--PPNQILFLTNLPE 181
+ Q + +++PP ++P PA A T+G +P++ PPN+ILFL +LP+
Sbjct: 127 EAQKK---LKRPPGAPTEPGRPAKTAKGAGLKPTSGAAAAVIPDEYLPPNKILFLRDLPD 183
Query: 182 ETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHG 230
+ L+ +F +F GF+EVRLVP R IAFVE+ENE + +AK A G
Sbjct: 184 TADQDSLTAVFGRFEGFQEVRLVPGRKGIAFVEYENESGAISAKEATSG 232
>gi|242207485|ref|XP_002469596.1| predicted protein [Postia placenta Mad-698-R]
gi|220731400|gb|EED85245.1| predicted protein [Postia placenta Mad-698-R]
Length = 231
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 83/220 (37%), Positives = 124/220 (56%), Gaps = 19/220 (8%)
Query: 24 LKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83
LK SL +F +G+++D+VA L+MRGQAFV F+ A AL+ ++GFP Y KPM+I
Sbjct: 22 LKASLRGLFKAYGEVLDVVAHSNLRMRGQAFVSFESADVAKKALKEVKGFPLYSKPMQIS 81
Query: 84 YSKTDSD-VISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQ 142
+++T SD V+ K+ E K R +E + + K +AR M A+
Sbjct: 82 FARTRSDAVVKKLDAARFEEHKAHR-----IEQKKSTRYTNPIKRKYRARKMAAELDGPG 136
Query: 143 ALSVQQPPVSQPAPPAPMATAGVPEQ--PPNQILFLTNLPEETSEMMLSMLFNQFPGFKE 200
A+ V + P Q +P++ PPN+ILFL NLP+ S+ L LF+Q+P E
Sbjct: 137 AVPVSKRPNVQ-----------MPDEYLPPNKILFLQNLPDSVSKDQLMALFSQYPNLYE 185
Query: 201 VRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMK 240
VRL+P + DIAFVE+ +E + AK ALH +K+ + +K
Sbjct: 186 VRLIPTKKDIAFVEYMDEGSATVAKDALHNYKLDGENKIK 225
>gi|430811247|emb|CCJ31263.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 367
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 85/215 (39%), Positives = 119/215 (55%), Gaps = 22/215 (10%)
Query: 24 LKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83
LKKSL A+FS +G I+DI+A K ++MRGQAFV+F I SA A+ +Q F +DKPM +Q
Sbjct: 45 LKKSLEAVFSSYGTILDIIAHKNIRMRGQAFVVFDSIDSAQKAIADVQAFTLFDKPMVLQ 104
Query: 84 YSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQA 143
YSKT SD K GT E E K ++ KEQ + Q + +Q+ A
Sbjct: 105 YSKTKSDATVKRLGTHEE---------------FEEHKKRRLEKKEQLKSTQPKTKQINA 149
Query: 144 LSVQQPPVSQPAPPAPMATAGVPEQ--PPNQILFLTNLPEETSEMMLSMLFNQFPGFKEV 201
+ ++ + +P++ PP++ILFL LPE + +LS +FN+F GFKEV
Sbjct: 150 STTKKNTSKKTQKQNT-----IPDEHLPPHKILFLQKLPENITAEVLSAVFNRFSGFKEV 204
Query: 202 RLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPT 236
R+VP R IAFVE+E + AK G + T
Sbjct: 205 RMVPGRPGIAFVEYETNDDAVIAKHGTVGMALGGT 239
>gi|840821|emb|CAA44751.1| U2-snRNP-specific b'' [Mus musculus]
Length = 97
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 65/82 (79%), Positives = 73/82 (89%)
Query: 165 VPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAA 224
VP+ PPN ILFL NLPEET+EMMLSML NQFPGFKEVRLVP RHDIAFVEFEN+ Q+ AA
Sbjct: 16 VPDYPPNYILFLNNLPEETNEMMLSMLLNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAA 75
Query: 225 KLALHGFKITPTHAMKISFAKK 246
+ AL GFKITP+HAMKI++AKK
Sbjct: 76 RDALQGFKITPSHAMKITYAKK 97
>gi|194375486|dbj|BAG56688.1| unnamed protein product [Homo sapiens]
Length = 203
Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 91/195 (46%), Positives = 111/195 (56%), Gaps = 44/195 (22%)
Query: 91 VISKIKGTFMERPKKVRKQ-PAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALS---- 145
+I+K+KGTF+ER +K K+ P E PA K + A +Q M ++
Sbjct: 14 IIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPR 73
Query: 146 -------------------------VQQPPVSQPA--------PPA-PMATAGVPEQPPN 171
Q PP + P PPA P++ E PPN
Sbjct: 74 IMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLS-----ENPPN 128
Query: 172 QILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGF 231
ILFLTNLPEET+E+MLSMLFNQFPGFKEVRLVP RHDIAFVEF+NE+Q+ AA+ AL GF
Sbjct: 129 HILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGF 188
Query: 232 KITPTHAMKISFAKK 246
KIT +AMKISFAKK
Sbjct: 189 KITQNNAMKISFAKK 203
>gi|347838217|emb|CCD52789.1| similar to u2 small nuclear ribonucleoprotein b'' [Botryotinia
fuckeliana]
Length = 252
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 87/230 (37%), Positives = 128/230 (55%), Gaps = 18/230 (7%)
Query: 14 VYVTHISST----DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+YV ++ + L ++L +FS++G I++IVA LK +GQAF++F+++ SAT A+
Sbjct: 17 LYVNNLEESIKPAALIEALTELFSEYGTILEIVAKTNLKAKGQAFIVFEDVESATKAIED 76
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
+QGF + K MRI Y+KT SD K +G E R++ A+K +KKAA+
Sbjct: 77 IQGFELFGKEMRIAYAKTRSDASVKREGGHEELEVHKRRRL--------AEKERKKAAEI 128
Query: 130 QARLMQ----AQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQ--PPNQILFLTNLPEET 183
R A + A ++ + P A A VP++ PPN+ILF+ NLPEE
Sbjct: 129 TLRPTTGPALANPADLAARPIKATRGAGLKSSNPAAAAVVPDEYLPPNKILFVQNLPEEY 188
Query: 184 SEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKI 233
ML+ +F +F GF+EVRLVP R IAFVE+E E S AK G +
Sbjct: 189 DVDMLTSIFGRFEGFREVRLVPGRKGIAFVEYETETGSIGAKENTAGMAL 238
>gi|393233936|gb|EJD41503.1| RNA-binding domain-containing protein [Auricularia delicata
TFB-10046 SS5]
Length = 249
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 78/231 (33%), Positives = 127/231 (54%), Gaps = 19/231 (8%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
I T +K++L +F +G ++D+VA ++MRGQAFV F+ A AL+ ++GFP Y K
Sbjct: 35 IKITVMKQTLKNLFKSYGNVLDVVAHSNIRMRGQAFVSFESKDIARKALKEVKGFPLYSK 94
Query: 79 PMRIQYSKTDSD-VISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQ 137
PM++ ++KT SD V+ K+ +E E KK + + + Q
Sbjct: 95 PMQVSFAKTRSDAVVQKLDADHLE----------------EHKKERLEHKRTQRWHNPHA 138
Query: 138 QQQMQALSVQQPPVSQPAPPAPMATAGVPEQ--PPNQILFLTNLPEETSEMMLSMLFNQF 195
++ ++ + P P +P++ PPN+ILFL NLP+ ++ L LF+Q+
Sbjct: 139 RKARAKRKAEKVDGAAPVPATKRPNVLMPDEYLPPNKILFLQNLPDSVTKDQLVTLFSQY 198
Query: 196 PGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
P EVRL+P + DIAFVE+ +E + AK ALH +K+ +K++FA+K
Sbjct: 199 PNLHEVRLIPTKKDIAFVEYVDEGSATVAKEALHNYKLDGETKIKVTFARK 249
>gi|302511081|ref|XP_003017492.1| hypothetical protein ARB_04373 [Arthroderma benhamiae CBS 112371]
gi|291181063|gb|EFE36847.1| hypothetical protein ARB_04373 [Arthroderma benhamiae CBS 112371]
Length = 240
Score = 140 bits (354), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 87/247 (35%), Positives = 132/247 (53%), Gaps = 33/247 (13%)
Query: 18 HISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYD 77
I LK++L IFS++G I++IVA LK +GQAF++F + SAT A+ + GF ++
Sbjct: 9 RIKVEQLKEALTEIFSEYGSILEIVAKTNLKAKGQAFIVFDNVDSATRAIDEVNGFELFE 68
Query: 78 KPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQ 137
KPM ++Y+KT SD +G ++ EA K ++ A KE+ + +A
Sbjct: 69 KPMVLEYAKTKSDATVMREGG---------------DEELEAHKRRRLAEKERKQAQEAL 113
Query: 138 QQQMQ------ALSVQQPPVSQPA---------PPAPMATAGVPEQ--PPNQILFLTNLP 180
+ Q + A P S+PA P A +P++ PPN+ILFL LP
Sbjct: 114 EAQKKLKRPAGAAGTAGGPDSRPAKAQKGAGLKPTGAAAAPVIPDEYLPPNKILFLRELP 173
Query: 181 EETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHA-M 239
E LS +F +FPGFKEVR+VP R IAFVE+ENE + +AK A G + +
Sbjct: 174 ETYDADGLSAIFGRFPGFKEVRMVPGRKGIAFVEYENESGAISAKEATSGMALGENEKPI 233
Query: 240 KISFAKK 246
K+++ ++
Sbjct: 234 KVTYQRQ 240
>gi|315044563|ref|XP_003171657.1| U1 small nuclear ribonucleoprotein A [Arthroderma gypseum CBS
118893]
gi|311344000|gb|EFR03203.1| U1 small nuclear ribonucleoprotein A [Arthroderma gypseum CBS
118893]
Length = 256
Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 89/241 (36%), Positives = 128/241 (53%), Gaps = 36/241 (14%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
VYV ++ LK++L IFS++G I++IVA LK +GQAF++F + SAT A+
Sbjct: 17 VYVRNLEERIKIDQLKEALTEIFSEYGSILEIVAKTNLKAKGQAFIVFDNVDSATRAIDE 76
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
+ GF ++KPM ++Y+KT SD +G E EA K K+ A KE
Sbjct: 77 VNGFELFEKPMVLEYAKTRSDATVLREGGGEE---------------LEAHKRKRLAEKE 121
Query: 130 QARLMQAQQQQMQ------ALSVQQPPVSQPA---------PPAPMATAGVPEQ--PPNQ 172
+ + A + Q + A P S+PA P A +P++ PPN+
Sbjct: 122 RKQAQDALEAQKKLKRPAGAAGAAGGPDSRPAKAAKGAGLKPTGAAAAPVIPDEYLPPNK 181
Query: 173 ILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFK 232
ILFL +LPE LS +F +FPGFKEVR+VP R IAFVE++NE + +AK A G
Sbjct: 182 ILFLRDLPETYDADGLSAIFGRFPGFKEVRMVPGRKGIAFVEYDNESGAISAKEATSGMA 241
Query: 233 I 233
+
Sbjct: 242 L 242
>gi|300174216|gb|ADJ68076.1| putative sansfille protein [Cecidostiba fungosa]
gi|300174218|gb|ADJ68077.1| putative sansfille protein [Cecidostiba fungosa]
gi|300174220|gb|ADJ68078.1| putative sansfille protein [Cecidostiba fungosa]
gi|300174222|gb|ADJ68079.1| putative sansfille protein [Cecidostiba fungosa]
gi|300174224|gb|ADJ68080.1| putative sansfille protein [Cecidostiba fungosa]
gi|300174226|gb|ADJ68081.1| putative sansfille protein [Cecidostiba fungosa]
gi|300174228|gb|ADJ68082.1| putative sansfille protein [Cecidostiba fungosa]
gi|300174230|gb|ADJ68083.1| putative sansfille protein [Cecidostiba fungosa]
gi|300174232|gb|ADJ68084.1| putative sansfille protein [Cecidostiba fungosa]
gi|300174234|gb|ADJ68085.1| putative sansfille protein [Caenacis lauta]
Length = 120
Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 84/135 (62%), Positives = 96/135 (71%), Gaps = 15/135 (11%)
Query: 55 VIFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVE 114
VIFKEIASATNALRSMQGFPFYDKPMRI YSKTDSDVI+K+KGTF ERPKK ++ P
Sbjct: 1 VIFKEIASATNALRSMQGFPFYDKPMRINYSKTDSDVIAKMKGTFTERPKKPKRV-IPAA 59
Query: 115 DPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQIL 174
D ++ ++ QA+QQQM P +Q A +A A VPEQPPNQIL
Sbjct: 60 D-------EEAKKAKKRAKEQAKQQQMG----YTPGATQ---HAGLANAAVPEQPPNQIL 105
Query: 175 FLTNLPEETSEMMLS 189
FLTNLP+ETSEMMLS
Sbjct: 106 FLTNLPDETSEMMLS 120
>gi|322709895|gb|EFZ01470.1| small nuclear ribonucleoprotein [Metarhizium anisopliae ARSEF 23]
Length = 242
Score = 140 bits (353), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 82/228 (35%), Positives = 127/228 (55%), Gaps = 14/228 (6%)
Query: 24 LKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83
L +SL IFS+FG ++DIVA K LK +GQAF++F + SA +A+ +QGF +DKPM++
Sbjct: 24 LTESLKTIFSEFGDVVDIVAKKNLKAKGQAFIVFSDPDSARDAIEELQGFQLFDKPMKLS 83
Query: 84 YSKTDSDVISKIKGTFME-----RPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQ 138
+KT SD ++ + E R + K+ + A++++ K+ A A ++
Sbjct: 84 LAKTRSDKSIEMNCSLDEFEAHKRNRLSEKEKRLALEAADSERQPKRGAGSTADNRPSKL 143
Query: 139 QQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGF 198
+ L P SQ P + PPN+ILFL N+PEE L +F +F GF
Sbjct: 144 SRPSGLKSTGPATSQVIPDEYL--------PPNKILFLQNIPEEYDVDALGAIFGRFEGF 195
Query: 199 KEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
+E+RLVP R IAFVE+E E + AK G K+ T A+K+++ ++
Sbjct: 196 REIRLVPGRRGIAFVEYEAEQGAIDAKENTSGMKLGDT-AIKVTYQRQ 242
>gi|425772063|gb|EKV10488.1| U1 small nuclear ribonucleoprotein, putative [Penicillium digitatum
Pd1]
gi|425777240|gb|EKV15421.1| U1 small nuclear ribonucleoprotein, putative [Penicillium digitatum
PHI26]
Length = 249
Score = 140 bits (353), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 86/235 (36%), Positives = 131/235 (55%), Gaps = 35/235 (14%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
VYV ++ LK +L IFS++G I+++VA LK +GQAF++F + SAT A+
Sbjct: 15 VYVKNLDERIKIDQLKHALEEIFSEYGTILEVVAKTNLKAKGQAFIVFDNVDSATRAIED 74
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
+ GF ++KPM + Y+KT SD + +G D EA K ++ A KE
Sbjct: 75 INGFDLFEKPMVLDYAKTPSDATVQREGG---------------SDELEAHKRRRLAEKE 119
Query: 130 QAR---LMQAQQQQMQALSVQQPPVSQPA---------PPAPMATAGVPEQ--PPNQILF 175
+ + ++AQ++ + + +P S+PA P TA VP++ PPN+ILF
Sbjct: 120 RKQAHEALEAQKKLKRPAAAAEP--SRPAKTTKGAGLKPTTAATTAVVPDEYLPPNKILF 177
Query: 176 LTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHG 230
L LP++ ++ LS +F +F GF+EVRLVP R IAFVE+E E + +AK A G
Sbjct: 178 LRELPDDATQEGLSAIFGRFEGFQEVRLVPGRKGIAFVEYEAEAGAISAKEATSG 232
>gi|302662086|ref|XP_003022702.1| hypothetical protein TRV_03163 [Trichophyton verrucosum HKI 0517]
gi|291186662|gb|EFE42084.1| hypothetical protein TRV_03163 [Trichophyton verrucosum HKI 0517]
Length = 267
Score = 140 bits (353), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 86/233 (36%), Positives = 125/233 (53%), Gaps = 32/233 (13%)
Query: 18 HISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYD 77
I LK++L IFS++G I++IVA LK +GQAF++F + SAT A+ + GF ++
Sbjct: 36 RIKVEQLKEALTEIFSEYGSILEIVAKTNLKAKGQAFIVFDNVDSATRAIDEVNGFELFE 95
Query: 78 KPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQ 137
KPM ++Y+KT SD +G ++ EA K ++ A KE+ + +A
Sbjct: 96 KPMVLEYAKTKSDATVMREGG---------------DEELEAHKRRRLAEKERKQAQEAL 140
Query: 138 QQQMQ------ALSVQQPPVSQPA---------PPAPMATAGVPEQ--PPNQILFLTNLP 180
+ Q + A P S+PA P A +P++ PPN+ILFL LP
Sbjct: 141 EAQKKLKRPAGAAGTAGGPDSRPAKAQKGAGLKPTGAAAAPVIPDEYLPPNKILFLRELP 200
Query: 181 EETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKI 233
E LS +F +FPGFKEVR+VP R IAFVE+ENE + +AK A G +
Sbjct: 201 ETYDADGLSAIFGRFPGFKEVRMVPGRKGIAFVEYENESGAISAKEATSGMAL 253
>gi|156049745|ref|XP_001590839.1| hypothetical protein SS1G_08579 [Sclerotinia sclerotiorum 1980]
gi|154692978|gb|EDN92716.1| hypothetical protein SS1G_08579 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 257
Score = 140 bits (353), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 90/242 (37%), Positives = 130/242 (53%), Gaps = 37/242 (15%)
Query: 14 VYVTHISST----DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ ++ T L ++L +FS++G I++I+A LK +GQAF++F+ + SAT A+
Sbjct: 17 LYINNLEETVKIPALIEALTELFSEYGTILEIIAKTNLKAKGQAFIVFENVESATKAIED 76
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
+QGF + K MRI Y+KT SD K +G E R++ A+K KKKAA+
Sbjct: 77 IQGFELFGKEMRIAYAKTRSDASVKREGGEEEYETHKRRRL--------AEKDKKKAAE- 127
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPA----------------PMATAGVPEQ--PPN 171
A ++ S P++ PA A P A A VP++ PPN
Sbjct: 128 -----LASSNTLKRPSAGA-PLANPADLAARPIKATRGAGLKSSNPAAAAVVPDEYLPPN 181
Query: 172 QILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGF 231
+ILF+ NLPEE ML+ +F +F GF+EVRLVP R IAFVE+E E S AK G
Sbjct: 182 KILFVQNLPEEYDVDMLTSIFGRFEGFREVRLVPGRKGIAFVEYETETGSIGAKENTAGM 241
Query: 232 KI 233
+
Sbjct: 242 TL 243
>gi|310798243|gb|EFQ33136.1| RNA recognition domain-containing protein [Glomerella graminicola
M1.001]
Length = 246
Score = 140 bits (352), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 84/242 (34%), Positives = 134/242 (55%), Gaps = 14/242 (5%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
VYV ++ LK +L IFS++G ++DIVA LK +GQAFV+F + +A A+
Sbjct: 10 VYVRNLEERAKVDQLKDALLQIFSEYGNVIDIVAKTNLKAKGQAFVVFDDPEAARKAIEE 69
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
+QGF ++KPM++ ++T SD K G E R++ A + KK +AA+E
Sbjct: 70 VQGFELFEKPMQLSLARTRSDATVKASGNDEEFELHKRRRLAEKD-----KKKAYEAAEE 124
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPA---PPAPMATAGVPEQ--PPNQILFLTNLPEETS 184
Q RL + A + ++ A P TA +P++ PPN+ILF+ NLPE+
Sbjct: 125 QKRLKRPGPGGATASDNRPTKAARGAGLKSTNPSTTAVIPDEYLPPNKILFVQNLPEDYD 184
Query: 185 EMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFA 244
++ +F +F GF+EVRLVP R IAFVE++ E + AK G + T+ +K+++
Sbjct: 185 IDAVTSIFGRFEGFREVRLVPGRRGIAFVEYDGEQGAITAKENTAGMVLGDTYTIKVTYQ 244
Query: 245 KK 246
++
Sbjct: 245 RQ 246
>gi|2982060|pdb|1AUD|A Chain A, U1a-Utrrna, Nmr, 31 Structures
gi|157874113|pdb|1DZ5|A Chain A, The Nmr Structure Of The 38kda U1a Protein-Pie Rna Complex
Reveals The Basis Of Cooperativity In Regulation Of
Polyadenylation By Human U1a Protein
gi|157874114|pdb|1DZ5|B Chain B, The Nmr Structure Of The 38kda U1a Protein-Pie Rna Complex
Reveals The Basis Of Cooperativity In Regulation Of
Polyadenylation By Human U1a Protein
Length = 101
Score = 140 bits (352), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 63/82 (76%), Positives = 77/82 (93%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
I +LKKSL+AIFS+FGQI+DI+ ++LKMRGQAFVIFKE++SATNALRSMQGFPFYDK
Sbjct: 20 IKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK 79
Query: 79 PMRIQYSKTDSDVISKIKGTFM 100
PMRIQY+KTDSD+I+K+KGTF+
Sbjct: 80 PMRIQYAKTDSDIIAKMKGTFV 101
>gi|344257423|gb|EGW13527.1| U2 small nuclear ribonucleoprotein B'' [Cricetulus griseus]
Length = 113
Score = 140 bits (352), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 64/82 (78%), Positives = 73/82 (89%)
Query: 165 VPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAA 224
VP+ PPN ILFL NLPEET+EMMLSMLFNQFPGFKEV L+P RHDIAFVEFEN+ Q+ AA
Sbjct: 32 VPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVCLIPGRHDIAFVEFENDGQAGAA 91
Query: 225 KLALHGFKITPTHAMKISFAKK 246
+ AL GFKITP+HAMKI++AKK
Sbjct: 92 RDALQGFKITPSHAMKITYAKK 113
>gi|406864382|gb|EKD17427.1| RNA recognition domain-containing protein [Marssonina brunnea f.
sp. 'multigermtubi' MB_m1]
Length = 253
Score = 140 bits (352), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 88/254 (34%), Positives = 134/254 (52%), Gaps = 37/254 (14%)
Query: 14 VYVTHISST----DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
VYV ++ + L +SL IFS++G I+D+VA LK +GQAFV+F + SAT +
Sbjct: 16 VYVRNLEESIKIPTLIESLKEIFSEYGTIIDVVAKANLKAKGQAFVVFDNVESATQCIEE 75
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
+QGF + KPM++ ++KT SD K E R++ A+K KKKAA+
Sbjct: 76 VQGFDLFGKPMQLAFAKTRSDAFVKRTAGDDELESHKRRRL--------AEKDKKKAAE- 126
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPA---------------PMATAGVPEQ--PPNQ 172
Q ++++ L PP P A A A +P++ PPN+
Sbjct: 127 -------QAEELKRLKHTAPPGMAPDMGARPIKATRGAGLKSTNAGAAAVIPDEYLPPNK 179
Query: 173 ILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFK 232
ILFL NLPE+ L+ +F +F GF+EVRLVP R IAFVE++ E+ + +AK G
Sbjct: 180 ILFLQNLPEDYDVDSLTAIFGRFEGFREVRLVPGRRGIAFVEYDAEVGAISAKENTAGMS 239
Query: 233 ITPTHAMKISFAKK 246
+ MK+++ ++
Sbjct: 240 LGQGQVMKVTYQRQ 253
>gi|326481613|gb|EGE05623.1| U1 small nuclear ribonucleoprotein [Trichophyton equinum CBS
127.97]
Length = 256
Score = 140 bits (352), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 89/255 (34%), Positives = 135/255 (52%), Gaps = 37/255 (14%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
VYV + I LK++L IFS++G I++IVA LK +GQAF++F + SAT A+
Sbjct: 17 VYVRNLEERIKVEQLKEALTEIFSEYGSILEIVAKTNLKAKGQAFIVFDNVDSATRAIDE 76
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
+ GF ++KPM ++Y+KT SD +G ++ E K ++ A KE
Sbjct: 77 VNGFELFEKPMVLEYAKTKSDATVMREGG---------------DEELEVHKRRRLAEKE 121
Query: 130 QARLMQAQQQQMQ------ALSVQQPPVSQPA---------PPAPMATAGVPEQ--PPNQ 172
+ + +A + Q + A P S+PA P A +P++ PPN+
Sbjct: 122 RKQAQEALEAQKKLKRPAGAAGTAGGPDSRPAKAQKGAGLKPTGTAAAPVIPDEYLPPNK 181
Query: 173 ILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFK 232
ILFL LPE LS +F +FPGFKEVR+VP R IAFVE+ENE + +AK A G
Sbjct: 182 ILFLRELPESYDADGLSAIFGRFPGFKEVRMVPGRKGIAFVEYENESGAISAKEATSGMA 241
Query: 233 ITPTHA-MKISFAKK 246
+ +K+++ ++
Sbjct: 242 LGENEKPIKVTYQRQ 256
>gi|242763791|ref|XP_002340645.1| U1 small nuclear ribonucleoprotein, putative [Talaromyces
stipitatus ATCC 10500]
gi|218723841|gb|EED23258.1| U1 small nuclear ribonucleoprotein, putative [Talaromyces
stipitatus ATCC 10500]
Length = 254
Score = 139 bits (351), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 88/236 (37%), Positives = 130/236 (55%), Gaps = 17/236 (7%)
Query: 12 NFVYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNAL 67
N YV ++ +LK++L AIFS++G I++IVA K LK +GQAF++F + SA A+
Sbjct: 14 NPTYVHNLEERVKIDELKEALTAIFSEYGTILEIVAKKNLKAKGQAFIVFDNVESAQRAI 73
Query: 68 RSMQGFPFYDKPMRIQYSKTDSD--VISKIKGTFMERPKKVR---KQPAPVEDPAEAKKS 122
+ GF KPM + ++KT SD V+ + +E K+ R K+ ++ EA+K
Sbjct: 74 EEVNGFDLLGKPMHLDFAKTRSDATVLREAGSEELEAHKRKRLAEKERKHAQEALEAQKK 133
Query: 123 KKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQ--PPNQILFLTNLP 180
K+ A +A + A P S TA +P++ PPN+ILFL LP
Sbjct: 134 LKRPAGVVPVPAEAGRPAKAARGTGLKPTSA------ATTAVIPDEYLPPNKILFLRELP 187
Query: 181 EETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPT 236
E+ ML+ +F +F GF+EVRLVP R IAFVE+ENE + +AK A G + P
Sbjct: 188 EDADSDMLAGIFGRFEGFREVRLVPGRKGIAFVEYENEAGAISAKEATSGMPMGPN 243
>gi|353234729|emb|CCA66751.1| related to small nuclear ribonucleoprotein snRNP U1A
[Piriformospora indica DSM 11827]
Length = 274
Score = 139 bits (351), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 78/228 (34%), Positives = 131/228 (57%), Gaps = 21/228 (9%)
Query: 24 LKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83
+K +L +F +G+++D+VA + ++MRGQAFV F + A AL+ +Q FP Y KPM++
Sbjct: 63 MKTTLTNLFRHYGKVLDVVAHRNVRMRGQAFVSFAHVDLARKALKEVQKFPLYGKPMQVS 122
Query: 84 YSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQA 143
Y+KT S+ + K P ++ + +KK ++ + + + + +A
Sbjct: 123 YAKTRSEAVVKTLS------------PEEFDEFHALRLKRKKRSRWDNPVRRKLRLKKEA 170
Query: 144 LSVQQPPVSQPAPPAPMATAGV---PEQ--PPNQILFLTNLPEETSEMMLSMLFNQFPGF 198
L+ +QP PAP A V P++ PPNQILF+ NLP + ++ L +F++F F
Sbjct: 171 LATG----AQPEAPAPTAKRPVVLMPDEYLPPNQILFVQNLPPDITKDALVAMFSRFENF 226
Query: 199 KEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
EVR++P + DIAFVE+ +E + AK ALH FK+ +K+++A+K
Sbjct: 227 YEVRMIPTKKDIAFVEYADEASATVAKDALHNFKLDGEAKIKVTYARK 274
>gi|449513275|ref|XP_004175808.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like, partial
[Taeniopygia guttata]
Length = 99
Score = 139 bits (351), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 65/82 (79%), Positives = 72/82 (87%)
Query: 165 VPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAA 224
VP+ PPN ILFL NLPEET+EMMLSMLFNQFPGFKEVRLVP R DIAFVEFENE Q+ AA
Sbjct: 18 VPDNPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRQDIAFVEFENENQAGAA 77
Query: 225 KLALHGFKITPTHAMKISFAKK 246
+ AL GFKI P+HAMKI++AKK
Sbjct: 78 RDALQGFKIPPSHAMKITYAKK 99
>gi|296809910|ref|XP_002845293.1| small nuclear ribonucleoprotein U [Arthroderma otae CBS 113480]
gi|238842681|gb|EEQ32343.1| small nuclear ribonucleoprotein U [Arthroderma otae CBS 113480]
Length = 256
Score = 139 bits (351), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 88/241 (36%), Positives = 131/241 (54%), Gaps = 36/241 (14%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
VYV ++ LK++L IFS++G I++IVA LK +GQAF++F + SAT A+
Sbjct: 17 VYVRNLEERIKIEQLKEALTEIFSEYGSILEIVAKTNLKAKGQAFIVFDNVDSATRAIDE 76
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
+ GF ++KPM ++Y+KT SD +G ++ EA K ++ A KE
Sbjct: 77 VNGFELFEKPMVLEYAKTRSDATVMREGG---------------DEELEAHKRRRLAEKE 121
Query: 130 QARLMQAQQQQMQ------ALSVQQPPVSQPAPPA------PMATAG---VPEQ--PPNQ 172
+ + +A + Q + A P S+PA A P+ A +P++ PPN+
Sbjct: 122 RKQAQEALEAQKKLKRPAGAAGAAGGPDSRPAKTAKGAGLKPIGAAAAPVIPDEYLPPNK 181
Query: 173 ILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFK 232
ILFL LPE LS +F +FPGFKEVR+VP R IAFVE++NE + +AK A G
Sbjct: 182 ILFLRELPETYDADGLSAIFGRFPGFKEVRMVPGRKGIAFVEYDNESGAISAKEATSGMA 241
Query: 233 I 233
+
Sbjct: 242 L 242
>gi|328850245|gb|EGF99412.1| hypothetical protein MELLADRAFT_40307 [Melampsora larici-populina
98AG31]
Length = 252
Score = 139 bits (350), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 82/230 (35%), Positives = 133/230 (57%), Gaps = 23/230 (10%)
Query: 23 DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRI 82
DL++ LY +FS G+++D+VALK +MRGQAF++F+++ +T A+R + G F ++ ++I
Sbjct: 39 DLRRMLYQLFSVHGKVLDVVALKGGQMRGQAFIVFRDLQGSTQAMRYLDGTLFLERELKI 98
Query: 83 QYSKTDS-DVISKIKGTFMERPKKVRK---QPAPVEDPAEAKKSKKKAAKEQARLMQAQQ 138
+Y++ S + +I G E +VR P ++D A +K + A
Sbjct: 99 KYARKRSFATVKQIAGD--EVLYQVRLGLIDPETLQDVARSKLTVSGA------------ 144
Query: 139 QQMQALSVQQPPVSQPAPPAPMATAG--VPEQPPNQILFLTNLPEETSEMMLSMLFNQFP 196
QA +V+QP S A A + + + PN +LFL LP E ++ M+++LF Q+P
Sbjct: 145 ---QAANVKQPADSAAAAAVKAAGSAPVLSGEDPNPVLFLEGLPAEVTDDMMAVLFQQYP 201
Query: 197 GFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
GF+ VRLVP R I FV+++ QS AK AL GF++ P MK+ FA++
Sbjct: 202 GFQSVRLVPGRTGIGFVQYDTSTQSDMAKTALDGFQLAPGVMMKVGFARR 251
>gi|148696477|gb|EDL28424.1| mCG19497, isoform CRA_a [Mus musculus]
Length = 132
Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 82/152 (53%), Positives = 98/152 (64%), Gaps = 20/152 (13%)
Query: 95 IKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQP 154
++GTF ++ KK K+ A + A A +KK Q A Q A + Q
Sbjct: 1 MRGTFADKEKKKEKKKAKTMEQAAAAANKKPG---QGTPNAANTQGTAAPNPQ------- 50
Query: 155 APPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVE 214
VP+ PPN ILFL NLPEET+EMMLSMLFNQFPGFKEVRLVP RHDIAFVE
Sbjct: 51 ----------VPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVE 100
Query: 215 FENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
FEN+ Q+ AA+ AL GFKITP+HAMKI++AKK
Sbjct: 101 FENDGQAGAARDALQGFKITPSHAMKITYAKK 132
>gi|119478950|ref|XP_001259504.1| small nuclear ribonucleoprotein U)1a,U)2b [Neosartorya fischeri
NRRL 181]
gi|119407658|gb|EAW17607.1| small nuclear ribonucleoprotein U)1a,U)2b [Neosartorya fischeri
NRRL 181]
Length = 251
Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 86/233 (36%), Positives = 128/233 (54%), Gaps = 37/233 (15%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
VYV ++ LK +L IFS++G I+DIVA LK +GQAF++F + SAT A+
Sbjct: 17 VYVRNLEERIKIDQLKVALEEIFSEYGNIVDIVAKTNLKAKGQAFIVFDNVESATRAIEE 76
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
+ GF +DKPM + Y+KT SD G E E K ++ A KE
Sbjct: 77 VNGFELFDKPMVLDYAKTRSDATVLRDGGTEE---------------LEVHKRRRLAEKE 121
Query: 130 QARLMQAQQQQMQALSVQQPP----VSQPA---------PPAPMATAGVPEQ--PPNQIL 174
+ + +A + Q + +++PP ++PA P + A A +P++ PPN+IL
Sbjct: 122 RKQAHEALEAQKK---LKRPPGPADTARPAKAAKGAGLKPTSGAAAAVIPDEYLPPNKIL 178
Query: 175 FLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLA 227
FL +LP+ + L+ +F +F GF+EVRLVP R IAFVE+ENE + +AK A
Sbjct: 179 FLRDLPDTADQESLTAIFGRFEGFQEVRLVPGRKGIAFVEYENESGAISAKEA 231
>gi|12836810|dbj|BAB23823.1| unnamed protein product [Mus musculus]
Length = 101
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 61/84 (72%), Positives = 76/84 (90%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
I +LK+SLYA+FSQFG ++DIVALKT+KMRGQAFVIFKE+ S+TNALR +QGFPFY K
Sbjct: 18 IKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQLQGFPFYGK 77
Query: 79 PMRIQYSKTDSDVISKIKGTFMER 102
PMRIQY+KTDSD+ISK++GTF ++
Sbjct: 78 PMRIQYAKTDSDIISKMRGTFADK 101
>gi|326472389|gb|EGD96398.1| U1 small nuclear ribonucleoprotein [Trichophyton tonsurans CBS
112818]
Length = 267
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 85/233 (36%), Positives = 124/233 (53%), Gaps = 32/233 (13%)
Query: 18 HISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYD 77
I LK++L IFS++G I++IVA LK +GQAF++F + SAT A+ + GF ++
Sbjct: 36 RIKVEQLKEALTEIFSEYGSILEIVAKTNLKAKGQAFIVFDNVDSATRAIDEVNGFELFE 95
Query: 78 KPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQ 137
KPM ++Y+KT SD +G ++ E K ++ A KE+ + +A
Sbjct: 96 KPMVLEYAKTKSDATVMREGG---------------DEELEVHKRRRLAEKERKQAQEAL 140
Query: 138 QQQMQ------ALSVQQPPVSQPA---------PPAPMATAGVPEQ--PPNQILFLTNLP 180
+ Q + A P S+PA P A +P++ PPN+ILFL LP
Sbjct: 141 EAQKKLKRPAGAAGTAGGPDSRPAKAQKGAGLKPTGTAAAPVIPDEYLPPNKILFLRELP 200
Query: 181 EETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKI 233
E LS +F +FPGFKEVR+VP R IAFVE+ENE + +AK A G +
Sbjct: 201 ESYDADGLSAIFGRFPGFKEVRMVPGRKGIAFVEYENESGAISAKEATSGMAL 253
>gi|380483560|emb|CCF40546.1| RNA recognition domain-containing protein [Colletotrichum
higginsianum]
Length = 246
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 82/230 (35%), Positives = 129/230 (56%), Gaps = 14/230 (6%)
Query: 24 LKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83
LK +L IFS++G +++IVA LK +GQAFV+F + +A A+ +QGF ++KPM++
Sbjct: 24 LKGALLQIFSEYGNVIEIVAKTNLKAKGQAFVVFADPEAARKAIEEVQGFELFEKPMQLA 83
Query: 84 YSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQA 143
++T SD K G E R++ A + KK +AA+EQ RL + A
Sbjct: 84 LARTRSDATVKTAGDDEEFELHKRRRLAEKD-----KKKAYEAAEEQKRLKRPGPSG--A 136
Query: 144 LSVQQPPVSQPAPPA-----PMATAGVPEQ--PPNQILFLTNLPEETSEMMLSMLFNQFP 196
++ PV P TA +P++ PPN+ILF+ NLPE+ ++ +F +F
Sbjct: 137 VAQDNRPVKAARGTGLKSTNPSTTAVIPDEYLPPNKILFVQNLPEDYDVDAVTSIFGRFE 196
Query: 197 GFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
GF+EVRLVP R IAFVE+E E + AK G + +H +K+++ ++
Sbjct: 197 GFREVRLVPGRRGIAFVEYEGEQGAITAKENTAGMVLGDSHTIKVTYQRQ 246
>gi|355721044|gb|AES07134.1| small nuclear ribonucleoprotein polypeptide B [Mustela putorius
furo]
Length = 120
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 62/92 (67%), Positives = 79/92 (85%), Gaps = 4/92 (4%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LK+SLYA+FSQFG ++DIVALKT+KMRGQAFVIFKE+ S+TNALR
Sbjct: 19 IYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQ 78
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFME 101
+QGFPFY KPMRIQY+KTDSD+ISK++GTF +
Sbjct: 79 LQGFPFYGKPMRIQYAKTDSDIISKMRGTFAD 110
>gi|157836397|pdb|2U1A|A Chain A, Rna Binding Domain 2 Of Human U1a Protein, Nmr, 20
Structures
Length = 88
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 68/92 (73%), Positives = 77/92 (83%), Gaps = 5/92 (5%)
Query: 155 APPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVE 214
AP P++ E PPN ILFLTNLPEET+E+MLSMLFNQFPGFKEVRLVP RHDIAFVE
Sbjct: 2 APAQPLS-----ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVE 56
Query: 215 FENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
F+NE+Q+ AA+ AL GFKIT +AMKISFAKK
Sbjct: 57 FDNEVQAGAARDALQGFKITQNNAMKISFAKK 88
>gi|27692318|gb|AAH08311.1| Similar to small nuclear ribonucleoprotein polypeptide B'', partial
[Homo sapiens]
Length = 109
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 61/83 (73%), Positives = 75/83 (90%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
I +LK+SLYA+FSQFG ++DIVALKT+KMRGQAFVIFKE+ S+TNALR +QGFPFY K
Sbjct: 18 IKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQLQGFPFYGK 77
Query: 79 PMRIQYSKTDSDVISKIKGTFME 101
PMRIQY+KTDSD+ISK++GTF +
Sbjct: 78 PMRIQYAKTDSDIISKMRGTFAD 100
>gi|327297312|ref|XP_003233350.1| U1 small nuclear ribonucleoprotein [Trichophyton rubrum CBS 118892]
gi|326464656|gb|EGD90109.1| U1 small nuclear ribonucleoprotein [Trichophyton rubrum CBS 118892]
Length = 256
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 88/241 (36%), Positives = 127/241 (52%), Gaps = 36/241 (14%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
VYV + I LK++L IFS++G I++IVA LK +GQAF++F + SAT A+
Sbjct: 17 VYVRNLEERIKVEQLKEALTEIFSEYGSILEIVAKTNLKAKGQAFIVFDNVESATRAIDE 76
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
+ GF ++KPM ++Y+KT SD +G ++ EA K + A KE
Sbjct: 77 VNGFELFEKPMVLEYAKTKSDATVMREGG---------------DEELEAHKRMRLAEKE 121
Query: 130 QARLMQAQQQQMQ------ALSVQQPPVSQPA---------PPAPMATAGVPEQ--PPNQ 172
+ + +A + Q + A P S+P P A VP++ PPN+
Sbjct: 122 RKQAQEALEAQKKLKRPAGAAGTAGGPDSRPTKAQKGTGLKPTGTAAAPVVPDEYLPPNK 181
Query: 173 ILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFK 232
ILFL LPE LS +F +FPGFKE+R+VP R IAFVE+ENE + +AK A G
Sbjct: 182 ILFLRELPETYDADGLSAIFGRFPGFKEIRMVPGRKGIAFVEYENESGAISAKEATSGMA 241
Query: 233 I 233
+
Sbjct: 242 L 242
>gi|440639249|gb|ELR09168.1| hypothetical protein GMDG_03746 [Geomyces destructans 20631-21]
Length = 288
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 87/245 (35%), Positives = 134/245 (54%), Gaps = 17/245 (6%)
Query: 14 VYV----THISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
VYV HI LK++L +FS++G+I+DIVA LK +GQAFV+F + SA A+
Sbjct: 49 VYVRNLEEHIKVDQLKEALTELFSEYGEIIDIVAKTNLKAKGQAFVVFDTVESAQKAIDE 108
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
+QGF ++KPM++ ++KT SD K G E RK+ A + KK +AA+E
Sbjct: 109 VQGFELFEKPMQLAFAKTRSDATVKRTGDEEEYESHKRKRLAEKD-----KKKSAEAAEE 163
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAG-----VPEQ--PPNQILFLTNLPEE 182
+L A A + P+ ++ VP++ PPN+ILF+ N+P+E
Sbjct: 164 AKKLKIAVAAAGNAADMTSRPIKATRGAGLRSSNAATSVVVPDEYLPPNKILFVQNVPDE 223
Query: 183 TSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPT-HAMKI 241
L+ +F +F GF+EVRLVP R IAFVE+E E + +AK G + A+K+
Sbjct: 224 YDIDALTSIFGRFEGFREVRLVPGRRGIAFVEYEAEAGAISAKENTAGVALGEAGQAIKV 283
Query: 242 SFAKK 246
++ ++
Sbjct: 284 TYQRQ 288
>gi|70997421|ref|XP_753458.1| U1 small nuclear ribonucleoprotein [Aspergillus fumigatus Af293]
gi|66851094|gb|EAL91420.1| U1 small nuclear ribonucleoprotein, putative [Aspergillus fumigatus
Af293]
gi|159126813|gb|EDP51929.1| U1 small nuclear ribonucleoprotein, putative [Aspergillus fumigatus
A1163]
Length = 255
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 83/225 (36%), Positives = 125/225 (55%), Gaps = 33/225 (14%)
Query: 18 HISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYD 77
I LK +L IFS++G I++IVA LK +GQAF++F + SAT A+ + GF +D
Sbjct: 29 RIKVDQLKVALEEIFSEYGNIVEIVAKTNLKAKGQAFIVFDNVESATRAIEEVNGFELFD 88
Query: 78 KPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQ 137
KPM + Y+KT SD +G E E K ++ A KE+ + +A
Sbjct: 89 KPMVLDYAKTKSDATVLREGGTEE---------------LEVHKRRRLAEKERKQAHEAL 133
Query: 138 QQQMQALSVQQPP----VSQPA---------PPAPMATAGVPEQ--PPNQILFLTNLPEE 182
+ Q + +++PP ++PA P + A A +P++ PPN+ILFL +LP+
Sbjct: 134 EAQKK---LKRPPGPADTARPAKTVKGAGLKPTSGAAAAVIPDEYLPPNKILFLRDLPDT 190
Query: 183 TSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLA 227
+ L+ +F +F GF+EVRLVP R IAFVE+ENE + +AK A
Sbjct: 191 ADQESLTAIFGRFEGFQEVRLVPGRKGIAFVEYENESGAISAKEA 235
>gi|22219383|pdb|1M5K|C Chain C, Crystal Structure Of A Hairpin Ribozyme In The
Catalytically-Active Conformation
gi|22219386|pdb|1M5K|F Chain F, Crystal Structure Of A Hairpin Ribozyme In The
Catalytically-Active Conformation
gi|24987694|pdb|1M5O|C Chain C, Transition State Stabilization By A Catalytic Rna
gi|24987697|pdb|1M5O|F Chain F, Transition State Stabilization By A Catalytic Rna
gi|24987701|pdb|1M5P|C Chain C, Transition State Stabilization By A Catalytic Rna
gi|24987705|pdb|1M5P|F Chain F, Transition State Stabilization By A Catalytic Rna
gi|24987712|pdb|1M5V|C Chain C, Transition State Stabilization By A Catalytic Rna
gi|24987713|pdb|1M5V|F Chain F, Transition State Stabilization By A Catalytic Rna
gi|49259013|pdb|1SJ3|P Chain P, Hepatitis Delta Virus Gemonic Ribozyme Precursor, With
Mg2+ Bound
gi|49259015|pdb|1SJ4|P Chain P, Crystal Structure Of A C75u Mutant Hepatitis Delta Virus
Ribozyme Precursor, In Cu2+ Solution
gi|49259033|pdb|1SJF|A Chain A, Crystal Structure Of The Hepatitis Delta Virus Gemonic
Ribozyme Precursor, With C75u Mutaion, In Cobalt
Hexammine Solution
gi|49259520|pdb|1VBX|A Chain A, Crystal Structure Of The Hepatitis Delta Virus Gemonic
Ribozyme Precursor, With C75u Mutaion, In Edta Solution
gi|49259522|pdb|1VBY|A Chain A, Crystal Structure Of The Hepatitis Delta Virus Gemonic
Ribozyme Precursor, With C75u Mutaion, And Mn2+ Bound
gi|49259524|pdb|1VBZ|A Chain A, Crystal Structure Of The Hepatitis Delta Virus Gemonic
Ribozyme Precursor, With C75u Mutaion, In Ba2+ Solution
gi|49259526|pdb|1VC0|A Chain A, Crystal Structure Of The Hepatitis Delta Virus Gemonic
Ribozyme Precursor, With C75u Mutaion, In Imidazole And
Sr2+ Solution
gi|49259528|pdb|1VC5|A Chain A, Crystal Structure Of The Wild Type Hepatitis Delta Virus
Gemonic Ribozyme Precursor, In Edta Solution
gi|49259530|pdb|1VC6|A Chain A, Crystal Structure Of The Hepatitis Delta Virus Gemonic
Ribozyme Product With C75u Mutaion, Cleaved In Imidazole
And Mg2+ Solutions
gi|49259532|pdb|1VC7|A Chain A, Crystal Structure Of The Hepatitis Delta Virus Gemonic
Ribozyme Precursor, With C75u Mutaion, In Sr2+ Solution
gi|145580050|pdb|2OIH|A Chain A, Hepatitis Delta Virus Gemonic Ribozyme Precursor With C75u
Mutation And Bound To Monovalent Cation Tl+
gi|145580056|pdb|2OJ3|A Chain A, Hepatitis Delta Virus Ribozyme Precursor Structure, With
C75u Mutation, Bound To Tl+ And Cobalt Hexammine
(Co(Nh3) 63+)
Length = 100
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 63/89 (70%), Positives = 79/89 (88%), Gaps = 4/89 (4%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LKKSL+AIFS+FGQI+DI+ ++LKMRGQAFVIFKE++SATNALRS
Sbjct: 12 IYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRS 71
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGT 98
MQGFPFYDKPMRIQY+KTDSD+I+K+KGT
Sbjct: 72 MQGFPFYDKPMRIQYAKTDSDIIAKMKGT 100
>gi|326428976|gb|EGD74546.1| hypothetical protein PTSG_05910 [Salpingoeca sp. ATCC 50818]
Length = 215
Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 81/237 (34%), Positives = 128/237 (54%), Gaps = 34/237 (14%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+YV +++ +L++SLY +FSQFG I+D+VALKT KMRGQAF+ FK+I ATNA+R+
Sbjct: 9 LYVNNLNDKIHKEELRRSLYFLFSQFGPILDVVALKTPKMRGQAFIAFKDITCATNAMRA 68
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
+Q F + KPM+I Y+K+ S K GT+ K RK+ + ++ A K+ +
Sbjct: 69 LQSFNLFGKPMKIAYAKSKSIASMKEDGTYQRYLAKQRKKTSGRDEEEPATKAARTETGR 128
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLS 189
+A M +G + N+IL++++LP ++ +
Sbjct: 129 RA----------------------------MDESG--DAGTNKILYVSHLPPTATKSDVH 158
Query: 190 MLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
LF +F G EVR+V R D+ FVE+E SA A L GF + + + +++AKK
Sbjct: 159 NLFAKFEGLVEVRMVDGRPDMCFVEYETARASAVAMQNLDGFSMGEDNTLSVTYAKK 215
>gi|361128202|gb|EHL00148.1| putative U1 small nuclear ribonucleoprotein [Glarea lozoyensis
74030]
Length = 273
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 88/235 (37%), Positives = 132/235 (56%), Gaps = 36/235 (15%)
Query: 9 CVTNFVYVTH--ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNA 66
+ N V V H I LK+SL +F+++G I+DIVA LK +GQAF++F + SA A
Sbjct: 35 SIPNEVPVAHQRIKVEQLKESLRELFAEYGTIIDIVAKTNLKAKGQAFIVFDSVDSAQKA 94
Query: 67 LRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKA 126
+ +QGF + K M + ++KT SD K +G E R++ A+K KKKA
Sbjct: 95 IDEVQGFELFGKEMELAFAKTRSDATVKRQGGEEELESHKRRRL--------AEKDKKKA 146
Query: 127 AKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPM-ATAG-------------VPEQ--PP 170
A+ QA+ Q++ +++P + P P+ AT G +P++ PP
Sbjct: 147 AE------QAESQKL----LKRPGAAAPEAARPIKATRGAGLKSSNPSGGAVIPDEYLPP 196
Query: 171 NQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAK 225
N+ILF+ NLP+E L+ +F +F GFKEVRLVP R IAFVE+E+E+ + +AK
Sbjct: 197 NKILFVQNLPDEYEVNALTSIFERFEGFKEVRLVPGRTGIAFVEYESEVGAISAK 251
>gi|255953987|ref|XP_002567746.1| Pc21g07040 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211589457|emb|CAP95601.1| Pc21g07040 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 249
Score = 137 bits (344), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 84/223 (37%), Positives = 123/223 (55%), Gaps = 11/223 (4%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
VYV + I LK +L IFS++G I++IVA LK +GQAF++F I SAT A+
Sbjct: 15 VYVKNLDERIKVDQLKHALEEIFSEYGTILEIVAKTNLKAKGQAFIVFDNIESATRAIED 74
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
+ GF ++KPM + Y+KT SD + + E R++ A E +K +A +
Sbjct: 75 INGFDLFEKPMVLDYAKTPSDATVQRESGGDELEAHKRRRLAEKE-----RKQAHEALEA 129
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQ--PPNQILFLTNLPEETSEMM 187
Q +L + A + + P TA VP++ PPN+ILFL LP++ ++
Sbjct: 130 QKKLKRPAAAAEPARPAKTTKGAGLKPTTAATTAVVPDEYLPPNKILFLRELPDDATQEG 189
Query: 188 LSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHG 230
LS +F +F GF+EVRLVP R IAFVE+E E + +AK A G
Sbjct: 190 LSAIFGRFEGFQEVRLVPGRKGIAFVEYEAEAGAISAKEATSG 232
>gi|134084288|emb|CAK43175.1| unnamed protein product [Aspergillus niger]
Length = 255
Score = 137 bits (344), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 86/229 (37%), Positives = 129/229 (56%), Gaps = 38/229 (16%)
Query: 18 HISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYD 77
I LK++L IFS++G +++IVA LK +GQAFV+F + +AT A+ + GF +D
Sbjct: 32 RIKVDQLKEALEEIFSEYGTVLEIVAKTNLKAKGQAFVVFDTVEAATRAIDEINGFELFD 91
Query: 78 KPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQ 137
KPM + Y+KT SD+ +G ED EA K ++ A K L +AQ
Sbjct: 92 KPMVLDYAKTRSDMTVLREGG---------------EDELEAHKRRRLAEKAHEAL-EAQ 135
Query: 138 QQQMQALSVQQPPV--SQPAPPAPMA-------TAG-----VPEQ--PPNQILFLTNLPE 181
++ +++PP ++P PA A T+G +P++ PPN+ILFL +LP+
Sbjct: 136 KK------LKRPPGAPTEPGRPAKTAKGAGLKPTSGAAAAVIPDEYLPPNKILFLRDLPD 189
Query: 182 ETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHG 230
+ L+ +F +F GF+EVRLVP R IAFVE+ENE + +AK A G
Sbjct: 190 TADQDSLTAVFGRFEGFQEVRLVPGRKGIAFVEYENESGAISAKEATSG 238
>gi|149597291|ref|XP_001509496.1| PREDICTED: U1 small nuclear ribonucleoprotein A-like
[Ornithorhynchus anatinus]
Length = 139
Score = 137 bits (344), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 65/80 (81%), Positives = 72/80 (90%)
Query: 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKL 226
E PPN ILFLTNLPEET+E+MLSMLFNQFPGFKEVRLVP RHDIAFVEF+NE+Q+ AA+
Sbjct: 60 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARD 119
Query: 227 ALHGFKITPTHAMKISFAKK 246
AL GFKIT +AMKISFAKK
Sbjct: 120 ALQGFKITQNNAMKISFAKK 139
>gi|358340304|dbj|GAA48227.1| U1 small nuclear ribonucleoprotein A [Clonorchis sinensis]
Length = 314
Score = 136 bits (342), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 63/99 (63%), Positives = 80/99 (80%), Gaps = 1/99 (1%)
Query: 148 QPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR 207
QP ++QPAPP P+ A +P+QPPN+ILFLTNLPE++ E MLSMLFNQF G++EVR+VP R
Sbjct: 217 QPAMTQPAPP-PINPAMIPDQPPNKILFLTNLPEDSDEAMLSMLFNQFSGYREVRMVPGR 275
Query: 208 HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
HDIAFVEF NE+++ AAK L GF I P ++I+FAKK
Sbjct: 276 HDIAFVEFGNEIEAGAAKHGLQGFNIRPGRPIRITFAKK 314
>gi|119174440|ref|XP_001239581.1| hypothetical protein CIMG_09202 [Coccidioides immitis RS]
gi|303314307|ref|XP_003067162.1| RNA recognition motif containing protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240106830|gb|EER25017.1| RNA recognition motif containing protein [Coccidioides posadasii
C735 delta SOWgp]
gi|320037431|gb|EFW19368.1| U1 small nuclear ribonucleoprotein [Coccidioides posadasii str.
Silveira]
gi|392869777|gb|EAS28302.2| U1 small nuclear ribonucleoprotein [Coccidioides immitis RS]
Length = 251
Score = 136 bits (342), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 84/245 (34%), Positives = 132/245 (53%), Gaps = 22/245 (8%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
VYV + I LK++L IFS++G I++IVA +K +GQAF++F + SAT A+
Sbjct: 17 VYVRNLEERIKVEQLKEALSEIFSEYGSILEIVAKTNVKAKGQAFIVFDNVDSATRAIEE 76
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFME-----RPKKVRKQPAPVEDPAEAKKSKK 124
+ GF ++KPM + Y+KT SD +G E R + K+ ++ EA+K K
Sbjct: 77 INGFELFEKPMVLDYAKTRSDATVLREGGEQELEAHKRKRLAEKERKQAQEALEAQKKLK 136
Query: 125 KAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQ--PPNQILFLTNLPEE 182
+ A A A+ + L P A P +P++ PPN+ILFL +P+
Sbjct: 137 RPAAATADTRPAKTTRGAGLK----PTGAAAAPV------IPDEYLPPNKILFLREVPDS 186
Query: 183 TSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHA-MKI 241
L+ +F++F GFKEVR+VP R IAFVE+ENE + +AK A G + M++
Sbjct: 187 YDASGLTAIFSRFEGFKEVRMVPGRKGIAFVEYENETGAISAKEATSGMALGENGKPMRV 246
Query: 242 SFAKK 246
++ ++
Sbjct: 247 TYQRQ 251
>gi|340521610|gb|EGR51844.1| predicted protein [Trichoderma reesei QM6a]
Length = 298
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 82/216 (37%), Positives = 125/216 (57%), Gaps = 15/216 (6%)
Query: 24 LKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83
L +L IFS+FG ++DIVA + LK +GQAFV+F E ++A A+ ++GF + KPMR+
Sbjct: 80 LTDALKTIFSEFGNVVDIVAKRNLKAKGQAFVVFDEPSAAHKAIEEVEGFELFGKPMRVA 139
Query: 84 YSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKK---AAKEQARLMQAQQQQ 140
++ SD ++ G+ + R + +A+K K+K AA EQ +L +A
Sbjct: 140 MARMQSDKTVELHGSSEDLDAHKRHR--------QAEKDKRKALEAADEQRQLKRAAAGA 191
Query: 141 MQAL-SVQQPPVSQPAPPAPMATAGVPEQ--PPNQILFLTNLPEETSEMMLSMLFNQFPG 197
+A S P + AP A+A VP++ PPN+ILF+ N+P+E L+ +F +F G
Sbjct: 192 SEARPSKSVKPSGLKSTSAP-ASAVVPDEYLPPNKILFVQNVPDEYDVEGLTAIFGRFDG 250
Query: 198 FKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKI 233
F+E+RLVP R IAFVE+ENE + AK G +
Sbjct: 251 FREIRLVPGRRGIAFVEYENEQGAITAKENTAGMSL 286
>gi|331231467|ref|XP_003328397.1| hypothetical protein PGTG_09691 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309307387|gb|EFP83978.1| hypothetical protein PGTG_09691 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 315
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 83/254 (32%), Positives = 137/254 (53%), Gaps = 34/254 (13%)
Query: 11 TNFVYVTHISST----DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNA 66
T VY+ +++ LK++L + FG ++D+VA ++++MRGQAFV F + A A
Sbjct: 78 TETVYLNNLNERVKLPALKQTLKNLLKNFGPVLDVVAHRSVRMRGQAFVAFPDREMAAKA 137
Query: 67 LRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKA 126
++ ++GFP Y KP+ I ++++ +D + K RK P D EA K+++
Sbjct: 138 VKEVKGFPLYGKPIEIAFARSPADCVVK------------RKTP----DDFEAHKAERLL 181
Query: 127 AKEQARLMQAQQQQ----------MQALSVQQPPVSQPAPPAPMATAGV--PE--QPPNQ 172
K+++R +++ + + P++ PPA V P+ QPPN+
Sbjct: 182 KKKRSRRENPLRKKAVEAKEAARKAASTAASAGPMASSVPPASSNRKIVQMPDEYQPPNK 241
Query: 173 ILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFK 232
ILF+ NLPE + L +LF Q+P EVR +P R +IAFVE+ + S AK ALH +K
Sbjct: 242 ILFIQNLPENAGKDALEVLFKQYPNLVEVRTIPGRSNIAFVEYVDATSSGVAKDALHNYK 301
Query: 233 ITPTHAMKISFAKK 246
H +K++FAK+
Sbjct: 302 FDGEHKIKVTFAKQ 315
>gi|121713748|ref|XP_001274485.1| small nuclear ribonucleoprotein U)1a,U)2b [Aspergillus clavatus NRRL
1]
gi|119402638|gb|EAW13059.1| small nuclear ribonucleoprotein U)1a,U)2b [Aspergillus clavatus NRRL
1]
Length = 1390
Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats.
Identities = 86/230 (37%), Positives = 129/230 (56%), Gaps = 33/230 (14%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
I LK++L IFS++G I++IVA LK +GQAF++F ++ SAT A+ + GF +DK
Sbjct: 1165 IKVDQLKEALAEIFSEYGNILEIVAKTNLKAKGQAFIVFDDVESATRAIDEVNGFDLFDK 1224
Query: 79 PMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQ 138
PM + Y+KT SD +G E E K ++ A KE+ + +A +
Sbjct: 1225 PMVLDYAKTKSDATVLREGGSEE---------------LEVHKRRRLAEKERKQAHEALE 1269
Query: 139 QQMQALSVQQPP----VSQPA--------PPAPMATAGV-PEQ--PPNQILFLTNLPEET 183
Q + +++PP ++PA P ATA V P++ PPN+ILFL +LP+
Sbjct: 1270 AQKK---LKRPPGPVDTARPAKTVKGAGLKPTTGATAAVIPDEYLPPNKILFLRDLPDSA 1326
Query: 184 SEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKI 233
+ L+ +F +F GF+EVRLVP R IAFVE+ENE + +AK A G +
Sbjct: 1327 DQDSLTAVFGRFEGFREVRLVPGRKGIAFVEYENESGAISAKEATSGMPM 1376
>gi|261191117|ref|XP_002621967.1| U1 small nuclear ribonucleoprotein [Ajellomyces dermatitidis
SLH14081]
gi|239591011|gb|EEQ73592.1| U1 small nuclear ribonucleoprotein [Ajellomyces dermatitidis
SLH14081]
gi|239613076|gb|EEQ90063.1| U1 small nuclear ribonucleoprotein [Ajellomyces dermatitidis ER-3]
Length = 253
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 85/243 (34%), Positives = 132/243 (54%), Gaps = 33/243 (13%)
Query: 6 AHICVTNFVYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIA 61
+ I + VYV + I LK++L IFS++G I+DIVA LK +GQAF++F +
Sbjct: 9 SGIAPNSTVYVRNLEERIKVEPLKEALAEIFSEYGNIIDIVAKTNLKAKGQAFIVFDNVD 68
Query: 62 SATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKK 121
SAT A+ + GF ++KPM + Y++T SD I V K+ E EA K
Sbjct: 69 SATRAIEEINGFELFEKPMVLDYARTRSDAI-------------VLKEHGETE--LEAHK 113
Query: 122 SKKKAAKEQAR---LMQAQQQQMQALSVQQPPVSQPA---------PPAPMATAGVPEQ- 168
K+ A KE+ + ++AQ++ + ++ P ++P+ P A + ++
Sbjct: 114 RKRLAEKERKQAQEALEAQKKLKRGVAAPGGPEARPSKVTRGAGLKPSTATAAPVIQDEY 173
Query: 169 -PPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLA 227
PPN+ILFL +P+ + L+ +F +F GFKEVR+VP R IAFVE+E E + +AK A
Sbjct: 174 LPPNKILFLREIPDSLDQDGLTEIFGRFEGFKEVRMVPGRKGIAFVEYEAETGAISAKEA 233
Query: 228 LHG 230
G
Sbjct: 234 TSG 236
>gi|76156594|gb|AAX27773.2| SJCHGC09182 protein [Schistosoma japonicum]
Length = 239
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 61/98 (62%), Positives = 78/98 (79%), Gaps = 4/98 (4%)
Query: 11 TNFVYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNA 66
N +Y+ + I +LKKSLYA+F QFGQI+DI+ +TLKMRGQAFV+F +I SA+ A
Sbjct: 57 NNTIYINNLNEKIKRDELKKSLYAVFVQFGQILDIITSRTLKMRGQAFVVFDDINSASTA 116
Query: 67 LRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPK 104
LRSMQGFP Y+KPMRI ++K DSDVI+K KGTF++RPK
Sbjct: 117 LRSMQGFPLYEKPMRIHFAKVDSDVIAKRKGTFVQRPK 154
>gi|358054072|dbj|GAA99871.1| hypothetical protein E5Q_06574 [Mixia osmundae IAM 14324]
Length = 302
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 135/244 (55%), Gaps = 24/244 (9%)
Query: 14 VYVTHISST----DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ +++ T ++K++L +F FG ++D+V + L+MRGQAFV F+ SA A+
Sbjct: 72 IYINNLNETVTIKNMKQTLRNLFRNFGTVLDVVVHRNLRMRGQAFVAFEHKKSAWRAVNE 131
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
++ FP Y KPM++ Y+KT +D + K RK P +++ +K +KK ++
Sbjct: 132 VKDFPLYGKPMQLAYAKTQADALVK------------RKLPEKLDEHLAERKVRKKVSRR 179
Query: 130 QARLMQ--AQQQQMQALSVQQPPVSQPAPPAPMATAGV---PEQ--PPNQILFLTNLPEE 182
+ Q + ++ + + PV A A + P++ PPN+ILF+ NLP+
Sbjct: 180 DNPIRQKALEARRAARTAAENAPVDGKAAAPAAAQRRIVQMPDEYLPPNKILFVQNLPDS 239
Query: 183 TSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKIS 242
++ L LF QFP EVR++P R IAFVEF +E S A+ ALH K + +K++
Sbjct: 240 VNKDALETLFTQFPNLSEVRMIPGRKGIAFVEFTDETSSGVAREALHNQKYEESK-IKVT 298
Query: 243 FAKK 246
FA++
Sbjct: 299 FARQ 302
>gi|3659937|pdb|1A9N|B Chain B, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
Complex Bound To A Fragment Of U2 Small Nuclear Rna
gi|3659938|pdb|1A9N|D Chain D, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
Complex Bound To A Fragment Of U2 Small Nuclear Rna
Length = 96
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 59/79 (74%), Positives = 72/79 (91%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
I +LK+SLYA+FSQFG ++DIVALKT+KMRGQAFVIFKE+ S+TNALR +QGFPFY K
Sbjct: 18 IKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQLQGFPFYGK 77
Query: 79 PMRIQYSKTDSDVISKIKG 97
PMRIQY+KTDSD+ISK++G
Sbjct: 78 PMRIQYAKTDSDIISKMRG 96
>gi|395818968|ref|XP_003782878.1| PREDICTED: LOW QUALITY PROTEIN: U2 small nuclear ribonucleoprotein
B''-like [Otolemur garnettii]
Length = 200
Score = 133 bits (335), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 89/238 (37%), Positives = 124/238 (52%), Gaps = 51/238 (21%)
Query: 14 VYVTHISST----DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ ++ KK + +FSQFG ++D V LKT++M GQ FV+FK++ S++NALR
Sbjct: 9 IYIYYVDGXVNKEGCKKFPHTLFSQFGYMVDTVVLKTVRMTGQTFVVFKKLGSSSNALRQ 68
Query: 70 MQGF-PFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAK 128
+Q F ++ + KTDS ++K GTF A K
Sbjct: 69 LQDFLSLVNQCTPVW--KTDS-YVTKTCGTF--------------------------AGK 99
Query: 129 EQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMML 188
E+ ++ +Q ++ A P GV + PPN ILF NL ET+EM
Sbjct: 100 EKNKMKTVEQ------------IAATANRKPSKPDGVSDYPPNYILFFINLLAETNEM-- 145
Query: 189 SMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
MLFN F FK+V LVP RH IAF EN+ + AA+ AL GFKIT +HAMKI+ A K
Sbjct: 146 -MLFNPFTSFKKVCLVPGRHGIAFA--ENDKXAGAAREALQGFKITLSHAMKITCANK 200
>gi|226469924|emb|CAX70243.1| U1 small nuclear ribonucleoprotein A [Schistosoma japonicum]
gi|226488855|emb|CAX74777.1| U1 small nuclear ribonucleoprotein A [Schistosoma japonicum]
Length = 333
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 61/98 (62%), Positives = 78/98 (79%), Gaps = 4/98 (4%)
Query: 11 TNFVYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNA 66
N +Y+ + I +LKKSLYA+F QFGQI+DI+ +TLKMRGQAFV+F +I SA+ A
Sbjct: 57 NNTIYINNLNEKIKRDELKKSLYAVFVQFGQILDIITSRTLKMRGQAFVVFDDINSASTA 116
Query: 67 LRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPK 104
LRSMQGFP Y+KPMRI ++K DSDVI+K KGTF++RPK
Sbjct: 117 LRSMQGFPLYEKPMRIHFAKVDSDVIAKRKGTFVQRPK 154
>gi|226294088|gb|EEH49508.1| U2 small nuclear ribonucleoprotein B [Paracoccidioides brasiliensis
Pb18]
Length = 253
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 85/236 (36%), Positives = 127/236 (53%), Gaps = 35/236 (14%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
VYV + I LK++L IFS++G I+DIVA LK +GQAF++F + SAT A+
Sbjct: 17 VYVQNLEERIKVEPLKEALTEIFSEYGNIIDIVAKTNLKAKGQAFIVFDNVDSATRAIEE 76
Query: 70 MQGFPFYDKPMRIQYSKTDSD-VISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAK 128
+ GF ++KPM + Y+KT SD + K +G E EA K ++ A K
Sbjct: 77 INGFELFEKPMVLDYAKTRSDATVLKEQG----------------EGELEAHKRRRLAEK 120
Query: 129 EQARLMQA-QQQQMQALSVQQPPVSQPAPPAPMATAG-----------VPEQ--PPNQIL 174
E+ + +A + Q+ V P ++ P + AG +P++ PPN+IL
Sbjct: 121 ERKQAQEALEAQKKLKRGVVAPGGAEARPSKAVKGAGLKPSNAAAAPVIPDEYLPPNKIL 180
Query: 175 FLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHG 230
FL +P+ + L+ +F +F GFKEVR+VP R IAFVE+E E + +AK A G
Sbjct: 181 FLREIPDSLDQDGLTAVFGRFEGFKEVRMVPGRKGIAFVEYEAETGAISAKEATSG 236
>gi|225561807|gb|EEH10087.1| small nuclear ribonucleoprotein U [Ajellomyces capsulatus G186AR]
Length = 249
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 87/234 (37%), Positives = 125/234 (53%), Gaps = 29/234 (12%)
Query: 8 ICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNAL 67
I V N I S LK++L IFS++G I+DIVA LK +GQAFV+F + SAT A+
Sbjct: 17 IYVRNLEERIKIES--LKEALTEIFSEYGNIIDIVAKTNLKAKGQAFVVFDNVDSATRAI 74
Query: 68 RSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAA 127
+ GF ++KPM + Y+KT SD V K+ E EA K K+ A
Sbjct: 75 EEINGFELFEKPMVLDYAKTRSDAT-------------VLKEQGEAE--LEAHKRKRLAE 119
Query: 128 KEQARLMQAQQQQMQALSVQQPPVSQPA---------PPAPMATAGVPEQ--PPNQILFL 176
K Q L +AQ++ + + ++P+ P A +P++ PPN+ILFL
Sbjct: 120 KAQEAL-EAQKKLKRGAAAPGGAETRPSKVTRGTGLKPSNAAAAPVIPDEYLPPNKILFL 178
Query: 177 TNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHG 230
+P+ + L+ +F +F GFKEVR+VP R IAFVE+E E + +AK A G
Sbjct: 179 REIPDSLDQDGLTAVFGRFEGFKEVRMVPGRKGIAFVEYEAETGAISAKEATSG 232
>gi|226488853|emb|CAX74776.1| U1 small nuclear ribonucleoprotein A [Schistosoma japonicum]
Length = 333
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 61/98 (62%), Positives = 78/98 (79%), Gaps = 4/98 (4%)
Query: 11 TNFVYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNA 66
N +Y+ + I +LKKSLYA+F QFGQI+DI+ +TLKMRGQAFV+F +I SA+ A
Sbjct: 57 NNTIYINNLNEKIKRDELKKSLYAVFVQFGQILDIITSRTLKMRGQAFVVFDDINSASTA 116
Query: 67 LRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPK 104
LRSMQGFP Y+KPMRI ++K DSDVI+K KGTF++RPK
Sbjct: 117 LRSMQGFPLYEKPMRIHFAKVDSDVIAKRKGTFVQRPK 154
>gi|358378115|gb|EHK15797.1| hypothetical protein TRIVIDRAFT_195742 [Trichoderma virens Gv29-8]
Length = 242
Score = 133 bits (334), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 81/216 (37%), Positives = 124/216 (57%), Gaps = 15/216 (6%)
Query: 24 LKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83
L ++L IFS+FG ++DIVA + LK +GQAF++F + +A NA+ ++GF + KPMR+
Sbjct: 24 LAEALKTIFSEFGNVVDIVAKRNLKAKGQAFIVFDQPGAAHNAIEEVEGFELFGKPMRVA 83
Query: 84 YSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKK---AAKEQARLMQAQQQQ 140
++ SD ++ E R + +A+K K+K AA EQ L +A
Sbjct: 84 MARMQSDKTVEMNCNTDEFEAHKRHR--------QAEKDKRKALEAADEQRHLKRAAGGA 135
Query: 141 MQAL-SVQQPPVSQPAPPAPMATAGVPEQ--PPNQILFLTNLPEETSEMMLSMLFNQFPG 197
+A S P+ + AP A+A VP++ PPN+ILF+ N+P+E L+ +F +F G
Sbjct: 136 PEARPSKSAKPLGLKSTSAP-ASAVVPDEYLPPNKILFIQNVPDEYDVDALNAVFGRFDG 194
Query: 198 FKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKI 233
F+E+RLVP R IAFVE+ENE + AK G +
Sbjct: 195 FREIRLVPGRRGIAFVEYENEQGAITAKENTAGMAL 230
>gi|240275413|gb|EER38927.1| small nuclear ribonucleoprotein [Ajellomyces capsulatus H143]
gi|325091251|gb|EGC44561.1| small nuclear ribonucleoprotein U [Ajellomyces capsulatus H88]
Length = 253
Score = 133 bits (334), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 86/237 (36%), Positives = 127/237 (53%), Gaps = 31/237 (13%)
Query: 8 ICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNAL 67
I V N I S LK++L IFS++G I+DIVA LK +GQAFV+F + SAT A+
Sbjct: 17 IYVRNLEERIKIES--LKEALTEIFSEYGNIIDIVAKTNLKAKGQAFVVFDNVDSATRAI 74
Query: 68 RSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAA 127
+ GF ++KPM + Y+KT SD V K+ E EA K K+ A
Sbjct: 75 EEINGFELFEKPMVLDYAKTRSDAT-------------VLKEQGEAE--LEAHKRKRLAE 119
Query: 128 KEQAR---LMQAQQQQMQALSVQQPPVSQPA---------PPAPMATAGVPEQ--PPNQI 173
KE+ + ++AQ++ + + ++P+ P A +P++ PPN+I
Sbjct: 120 KERKQAQEALEAQKKLKRGAAAPGGAETRPSKVTRGTGLKPSNAAAAPVIPDEYLPPNKI 179
Query: 174 LFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHG 230
LFL +P+ + L+ +F +F GFKEVR+VP R IAFVE+E E + +AK A G
Sbjct: 180 LFLREIPDSLDQDGLTAVFGRFEGFKEVRMVPGRKGIAFVEYEAETGAISAKEATSG 236
>gi|126031306|pdb|2NZ4|A Chain A, Structural Investigation Of The Glms Ribozyme Bound To
Its Catalytic Cofactor
gi|126031309|pdb|2NZ4|B Chain B, Structural Investigation Of The Glms Ribozyme Bound To
Its Catalytic Cofactor
gi|126031312|pdb|2NZ4|C Chain C, Structural Investigation Of The Glms Ribozyme Bound To
Its Catalytic Cofactor
gi|126031315|pdb|2NZ4|D Chain D, Structural Investigation Of The Glms Ribozyme Bound To
Its Catalytic Cofactor
Length = 94
Score = 133 bits (334), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 61/87 (70%), Positives = 77/87 (88%), Gaps = 4/87 (4%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LKKSL+AIFS+FGQI+DI+ ++LKMRGQAFVIFKE++SATNALRS
Sbjct: 8 IYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRS 67
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIK 96
MQGFPFYDKPMRIQY+KTDSD+I+K+K
Sbjct: 68 MQGFPFYDKPMRIQYAKTDSDIIAKMK 94
>gi|389635243|ref|XP_003715274.1| small nuclear ribonucleoprotein U1a [Magnaporthe oryzae 70-15]
gi|351647607|gb|EHA55467.1| small nuclear ribonucleoprotein U1a [Magnaporthe oryzae 70-15]
gi|440466162|gb|ELQ35444.1| small nuclear ribonucleoprotein U1a,U2b [Magnaporthe oryzae Y34]
gi|440480667|gb|ELQ61320.1| small nuclear ribonucleoprotein U1a,U2b [Magnaporthe oryzae P131]
Length = 234
Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 80/209 (38%), Positives = 117/209 (55%), Gaps = 26/209 (12%)
Query: 24 LKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83
LK++L IFS++G I+DIVA LK +GQAFV+F + ASA A+ +QGF +DKP+ +
Sbjct: 23 LKETLTTIFSEYGNIIDIVAKTNLKAKGQAFVVFDDPASAQRAIEEVQGFEIFDKPIHLA 82
Query: 84 YSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQA 143
++T SD K G+ E+ EA K ++ A ++ + +A Q Q
Sbjct: 83 LARTRSDATVKANGS---------------EEDLEAHKRRRVAEMDKKKAAEAAAAQTQL 127
Query: 144 LSVQQPP-----VSQPAPPAPMATAGVPEQ--PPNQILFLTNLPEETSEMMLSMLFNQFP 196
P + PA AP VP++ PPN+ILF+ +LPE+ L+ +F +F
Sbjct: 128 KDRANKPGRGLKATGPAGAAPT----VPDEYLPPNKILFVQHLPEDFDVEKLTTVFGRFD 183
Query: 197 GFKEVRLVPNRHDIAFVEFENEMQSAAAK 225
GF+EVRLVP R IAFVE++ E + AAK
Sbjct: 184 GFREVRLVPGRRGIAFVEYDGEAGAIAAK 212
>gi|378726702|gb|EHY53161.1| U2 small nuclear ribonucleoprotein B'' [Exophiala dermatitidis
NIH/UT8656]
Length = 256
Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 84/244 (34%), Positives = 130/244 (53%), Gaps = 36/244 (14%)
Query: 11 TNFVYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNA 66
++ VYV ++ LK++L IFS++G I+D+VA K LK +GQAFV+F SA A
Sbjct: 14 SSTVYVKNLEERIKIDQLKEALTEIFSEYGNIIDLVAKKNLKAKGQAFVVFDSAESAAKA 73
Query: 67 LRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKA 126
+ + GF +DKPM++ +++T SD V K+ E E K + A
Sbjct: 74 IEEVNGFELFDKPMQLDFARTRSDAT-------------VLKEEG--EQGLEKWKRSRLA 118
Query: 127 AKEQARLMQAQQQQMQ------ALSVQQPPVSQPA---------PPAPMATAGVPEQ--P 169
KE+ + +A QQ+++ +PA P A A +P++ P
Sbjct: 119 EKERKQAQEATQQKLKRPAQAAGAQEGAGLAGRPAKTAKGAGLKPSGTNAAAIIPDEYLP 178
Query: 170 PNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALH 229
PN+ILF+ +LP+ LS +F++F GFKEVR+VP R IAFVE+E+E + +AK A
Sbjct: 179 PNKILFIRDLPDSYDADGLSRIFSRFEGFKEVRMVPGRKGIAFVEYESEAGAISAKEATA 238
Query: 230 GFKI 233
G ++
Sbjct: 239 GMQL 242
>gi|425868416|gb|AFY04338.1| sans fille, partial [Physocephala marginata]
Length = 116
Score = 132 bits (333), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 77/145 (53%), Positives = 91/145 (62%), Gaps = 29/145 (20%)
Query: 48 KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVR 107
KMRGQAFV+FKEI+SA+NALR+MQGFPFYDKPMRI Y+KTDSD+++KIKGTF ER
Sbjct: 1 KMRGQAFVVFKEISSASNALRTMQGFPFYDKPMRIAYAKTDSDIVAKIKGTFKER----- 55
Query: 108 KQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPE 167
K K Q + +++ A + P SQ E
Sbjct: 56 ------------PKKVKPPKAPQVTEEKKDKKKKAANAENTHPNSQ------------TE 91
Query: 168 QPPNQILFLTNLPEETSEMMLSMLF 192
QPPNQILFLTNLPEET+EMMLSMLF
Sbjct: 92 QPPNQILFLTNLPEETNEMMLSMLF 116
>gi|52696011|pdb|1U6B|A Chain A, Crystal Structure Of A Self-Splicing Group I Intron With
Both Exons
gi|75765951|pdb|1ZZN|A Chain A, Crystal Structure Of A Group I IntronTWO EXON COMPLEX
THAT Includes All Catalytic Metal Ion Ligands.
gi|262367893|pdb|3G8S|A Chain A, Crystal Structure Of The Pre-Cleaved Bacillus Anthracis
Glms Ribozyme
gi|262367896|pdb|3G8S|B Chain B, Crystal Structure Of The Pre-Cleaved Bacillus Anthracis
Glms Ribozyme
gi|262367899|pdb|3G8S|C Chain C, Crystal Structure Of The Pre-Cleaved Bacillus Anthracis
Glms Ribozyme
gi|262367902|pdb|3G8S|D Chain D, Crystal Structure Of The Pre-Cleaved Bacillus Anthracis
Glms Ribozyme
gi|262367905|pdb|3G8T|A Chain A, Crystal Structure Of The G33a Mutant Bacillus Anthracis
Glms Ribozyme Bound To Glcn6p
gi|262367908|pdb|3G8T|B Chain B, Crystal Structure Of The G33a Mutant Bacillus Anthracis
Glms Ribozyme Bound To Glcn6p
gi|262367911|pdb|3G8T|C Chain C, Crystal Structure Of The G33a Mutant Bacillus Anthracis
Glms Ribozyme Bound To Glcn6p
gi|262367914|pdb|3G8T|D Chain D, Crystal Structure Of The G33a Mutant Bacillus Anthracis
Glms Ribozyme Bound To Glcn6p
gi|262367929|pdb|3G96|A Chain A, Crystal Structure Of The Bacillus Anthracis Glms
Ribozyme Bound To Man6p
gi|262367932|pdb|3G96|B Chain B, Crystal Structure Of The Bacillus Anthracis Glms
Ribozyme Bound To Man6p
gi|262367935|pdb|3G96|C Chain C, Crystal Structure Of The Bacillus Anthracis Glms
Ribozyme Bound To Man6p
gi|262367938|pdb|3G96|D Chain D, Crystal Structure Of The Bacillus Anthracis Glms
Ribozyme Bound To Man6p
gi|262367941|pdb|3G9C|A Chain A, Crystal Structure Of The Product Bacillus Anthracis Glms
Ribozyme
gi|262367944|pdb|3G9C|B Chain B, Crystal Structure Of The Product Bacillus Anthracis Glms
Ribozyme
gi|262367947|pdb|3G9C|C Chain C, Crystal Structure Of The Product Bacillus Anthracis Glms
Ribozyme
gi|262367950|pdb|3G9C|D Chain D, Crystal Structure Of The Product Bacillus Anthracis Glms
Ribozyme
gi|266618687|pdb|3IRW|P Chain P, Structure Of A C-Di-Gmp Riboswitch From V. Cholerae
gi|304445913|pdb|3MUM|P Chain P, Crystal Structure Of The G20a Mutant C-Di-Gmp Riboswith
Bound To C-Di- Gmp
gi|304445915|pdb|3MUR|P Chain P, Crystal Structure Of The C92u Mutant C-Di-Gmp Riboswith
Bound To C-Di- Gmp
gi|304445917|pdb|3MUT|P Chain P, Crystal Structure Of The G20aC92U MUTANT C-Di-Gmp
Riboswith Bound To C-Di-Gmp
gi|304445919|pdb|3MUV|P Chain P, Crystal Structure Of The G20aC92U MUTANT C-Di-Gmp
Riboswith Bound To C-Di-Amp
gi|304445933|pdb|3MXH|P Chain P, Native Structure Of A C-Di-Gmp Riboswitch From V.
Cholerae
gi|327533656|pdb|3P49|B Chain B, Crystal Structure Of A Glycine Riboswitch From
Fusobacterium Nucleatum
gi|345110840|pdb|3R1H|A Chain A, Crystal Structure Of The Class I Ligase
Ribozyme-Substrate Preligation Complex, C47u Mutant,
Ca2+ Bound
gi|345110843|pdb|3R1H|D Chain D, Crystal Structure Of The Class I Ligase
Ribozyme-Substrate Preligation Complex, C47u Mutant,
Ca2+ Bound
gi|345110846|pdb|3R1L|A Chain A, Crystal Structure Of The Class I Ligase
Ribozyme-Substrate Preligation Complex, C47u Mutant,
Mg2+ Bound
gi|345110849|pdb|3R1L|D Chain D, Crystal Structure Of The Class I Ligase
Ribozyme-Substrate Preligation Complex, C47u Mutant,
Mg2+ Bound
gi|367460217|pdb|3UCU|P Chain P, The C-Di-Gmp-I Riboswitch Bound To Pgpg
gi|367460220|pdb|3UCZ|P Chain P, The C-Di-Gmp-I Riboswitch Bound To Gpg
gi|367460223|pdb|3UD3|P Chain P, The C92u Mutant C-Di-Gmp-I Riboswitch Bound To Pgpa
gi|367460226|pdb|3UD4|P Chain P, The C92u Mutant C-Di-Gmp-I Riboswitch Bound To Gpa
Length = 98
Score = 132 bits (333), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 61/87 (70%), Positives = 77/87 (88%), Gaps = 4/87 (4%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LKKSL+AIFS+FGQI+DI+ ++LKMRGQAFVIFKE++SATNALRS
Sbjct: 12 IYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRS 71
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIK 96
MQGFPFYDKPMRIQY+KTDSD+I+K+K
Sbjct: 72 MQGFPFYDKPMRIQYAKTDSDIIAKMK 98
>gi|452838817|gb|EME40757.1| hypothetical protein DOTSEDRAFT_27368 [Dothistroma septosporum
NZE10]
Length = 234
Score = 132 bits (333), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 85/243 (34%), Positives = 137/243 (56%), Gaps = 18/243 (7%)
Query: 6 AHICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATN 65
A I + N I + L+ +L F +FG I+D+VA K L+ RGQAF++F A
Sbjct: 8 ATIYIKNLDEKVKIPA--LEAALRDTFEEFGDIIDVVAKKNLRARGQAFIVFSSPEEAEL 65
Query: 66 ALRSMQGFPFYDKPMRIQYSKTDSD-VISKIKG-TFMERPKKVRKQPAPVEDPAEAKKSK 123
AL S+QGF +++PM IQY+KT SD + +++G +E+ KK R K+ K
Sbjct: 66 ALESLQGFEIFERPMDIQYAKTRSDATVQQVEGEAGLEQHKKQR---------IAEKERK 116
Query: 124 KKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEET 183
+ A +A+ A++ ++L+ + ++P P A PPN+IL L LPE+
Sbjct: 117 QALAAAEAQAKPAKRAAAESLAERPAKSTKPGPGANQDEY----LPPNKILLLRELPEDY 172
Query: 184 SEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISF 243
+ L+ +F +FPGFKEVR+VP R +AF E+E+E S AA+ A++G + +K++F
Sbjct: 173 GKEALTAVFQRFPGFKEVRVVPGRKGLAFAEYEDETGSTAAREAMNGVTLG-EKTIKVTF 231
Query: 244 AKK 246
++
Sbjct: 232 QRQ 234
>gi|1431699|pdb|1URN|A Chain A, U1a MutantRNA COMPLEX + GLYCEROL
gi|1431701|pdb|1URN|B Chain B, U1a MutantRNA COMPLEX + GLYCEROL
gi|1431703|pdb|1URN|C Chain C, U1a MutantRNA COMPLEX + GLYCEROL
gi|28949021|pdb|1NU4|A Chain A, U1a Rna Binding Domain At 1.8 Angstrom Resolution
Reveals A Pre- Organized C-Terminal Helix
gi|28949022|pdb|1NU4|B Chain B, U1a Rna Binding Domain At 1.8 Angstrom Resolution
Reveals A Pre- Organized C-Terminal Helix
gi|269914461|pdb|3HHN|B Chain B, Crystal Structure Of Class I Ligase Ribozyme
Self-Ligation Product, In Complex With U1a Rbd
gi|269914463|pdb|3HHN|D Chain D, Crystal Structure Of Class I Ligase Ribozyme
Self-Ligation Product, In Complex With U1a Rbd
Length = 97
Score = 132 bits (333), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 61/87 (70%), Positives = 77/87 (88%), Gaps = 4/87 (4%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LKKSL+AIFS+FGQI+DI+ ++LKMRGQAFVIFKE++SATNALRS
Sbjct: 11 IYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRS 70
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIK 96
MQGFPFYDKPMRIQY+KTDSD+I+K+K
Sbjct: 71 MQGFPFYDKPMRIQYAKTDSDIIAKMK 97
>gi|171849013|pdb|3BO2|A Chain A, A Relaxed Active Site Following Exon Ligation By A Group
I Intron
gi|171849018|pdb|3BO3|A Chain A, A Relaxed Active Site Following Exon Ligation By A Group
I Intron
gi|171849022|pdb|3BO4|A Chain A, A Relaxed Active Site Following Exon Ligation By A Group
I Intron
gi|290790099|pdb|3IIN|A Chain A, Plasticity Of The Kink Turn Structural Motif
Length = 95
Score = 132 bits (333), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 61/87 (70%), Positives = 77/87 (88%), Gaps = 4/87 (4%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LKKSL+AIFS+FGQI+DI+ ++LKMRGQAFVIFKE++SATNALRS
Sbjct: 9 IYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRS 68
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIK 96
MQGFPFYDKPMRIQY+KTDSD+I+K+K
Sbjct: 69 MQGFPFYDKPMRIQYAKTDSDIIAKMK 95
>gi|33357758|pdb|1OIA|A Chain A, U1a Rnp Domain 1-95
gi|33357759|pdb|1OIA|B Chain B, U1a Rnp Domain 1-95
Length = 95
Score = 132 bits (333), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 61/84 (72%), Positives = 74/84 (88%), Gaps = 4/84 (4%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LKKSLYAIFSQFGQI+DI+ ++LKMRGQAFVIFKE++SATNALRS
Sbjct: 12 IYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRS 71
Query: 70 MQGFPFYDKPMRIQYSKTDSDVIS 93
MQGFPFYDKPMRIQY+KTDSD+I+
Sbjct: 72 MQGFPFYDKPMRIQYAKTDSDIIA 95
>gi|425868427|gb|AFY04343.1| sans fille, partial [Delia radicum]
Length = 114
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 86/145 (59%), Positives = 94/145 (64%), Gaps = 33/145 (22%)
Query: 50 RGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQ 109
RGQAFVIFKEIASA NALR+MQGFPFYDKPMRI YSKTDSDV++KIKGTF ERPKK++
Sbjct: 1 RGQAFVIFKEIASAANALRTMQGFPFYDKPMRIAYSKTDSDVVAKIKGTFKERPKKLKPP 60
Query: 110 P--APVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPE 167
APVED + KK A E A P +Q E
Sbjct: 61 KPVAPVEDKKDKKKKTSNA--ENAN-----------------PNTQ------------TE 89
Query: 168 QPPNQILFLTNLPEETSEMMLSMLF 192
QPPNQILFLTNLPEET+EMML MLF
Sbjct: 90 QPPNQILFLTNLPEETNEMMLPMLF 114
>gi|154283345|ref|XP_001542468.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150410648|gb|EDN06036.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 245
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 82/227 (36%), Positives = 123/227 (54%), Gaps = 29/227 (12%)
Query: 18 HISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYD 77
I LK++L IFS++G I+DIVA LK +GQAFV+F + SAT A+ + GF ++
Sbjct: 17 RIKIESLKEALTEIFSEYGNIIDIVAKTNLKAKGQAFVVFDNVDSATRAIEEINGFELFE 76
Query: 78 KPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQAR---LM 134
KPM + Y+KT SD V K+ E EA K K+ A KE+ + +
Sbjct: 77 KPMVLDYAKTRSDAT-------------VLKEQGEAE--LEAHKRKRLAEKERKQAQEAL 121
Query: 135 QAQQQQMQALSVQQPPVSQPA---------PPAPMATAGVPEQ--PPNQILFLTNLPEET 183
+AQ++ + + ++P+ P A +P++ PPN+ILFL +P+
Sbjct: 122 EAQKKLKRGAAAPGGAETRPSKVTRGTGLKPSNAAAAPVIPDEYLPPNKILFLREIPDSL 181
Query: 184 SEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHG 230
+ L+ +F +F GFKEVR+VP R IAFVE+E E + +AK A G
Sbjct: 182 DQEGLTAVFGRFEGFKEVRMVPGRKGIAFVEYEAETGAISAKEATSG 228
>gi|119568196|gb|EAW47811.1| hCG22524, isoform CRA_b [Homo sapiens]
Length = 174
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/82 (75%), Positives = 71/82 (86%)
Query: 165 VPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAA 224
V + PPN ILFL NLPEET+EMMLSMLFNQFPGFKEV LVP RHDIAFVEFEN+ ++ AA
Sbjct: 93 VLDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVCLVPGRHDIAFVEFENDGKAGAA 152
Query: 225 KLALHGFKITPTHAMKISFAKK 246
+ AL GFKIT +HAMKI++AKK
Sbjct: 153 RDALQGFKITTSHAMKITYAKK 174
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 36/61 (59%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
I +LK+ LYA+FSQFG ++D VALKT+KMRG+A + A S + F F
Sbjct: 18 IKKEELKRCLYALFSQFGHVVDFVALKTMKMRGRALSYLRNWAHPQMLRDSHKDFHFMGT 77
Query: 79 P 79
P
Sbjct: 78 P 78
>gi|302891485|ref|XP_003044624.1| hypothetical protein NECHADRAFT_100804 [Nectria haematococca mpVI
77-13-4]
gi|256725549|gb|EEU38911.1| hypothetical protein NECHADRAFT_100804 [Nectria haematococca mpVI
77-13-4]
Length = 243
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 131/238 (55%), Gaps = 34/238 (14%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
VYV ++ L ++L +FS+FG ++D+VA K LK +GQAFV+F + SA +A+
Sbjct: 10 VYVQNLEERVKLESLTEALRTVFSEFGNVVDVVAKKNLKAKGQAFVVFDDAESARSAIEE 69
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
+ GF + KPM++ +++ SD ++ + ++ E+ K ++A K+
Sbjct: 70 VDGFELFGKPMKVALARSRSDKTVEMNCS---------------QEEFESHKRHRQAEKD 114
Query: 130 QARLMQAQQQQMQALSVQQP---PVSQPAPPA---------PMATAGVPEQ--PPNQILF 175
+ + ++A ++Q Q L+ + P P S+PA A A GV ++ PPN+ILF
Sbjct: 115 KRKALEAAEEQRQ-LNKRGPGAAPDSRPAKTARPSGLKSTSAAAAGGVLDEFLPPNKILF 173
Query: 176 LTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKI 233
+ NLPE+ L+ +F +F GF+EVRLVP R IAFVE+E E + AK G +
Sbjct: 174 VQNLPEDYDIEALTGVFGRFEGFREVRLVPGRRGIAFVEYEAEQGAITAKENTAGMSL 231
>gi|123505091|ref|XP_001328901.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121911850|gb|EAY16678.1| hypothetical protein TVAG_066830 [Trichomonas vaginalis G3]
Length = 238
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 84/240 (35%), Positives = 130/240 (54%), Gaps = 11/240 (4%)
Query: 10 VTNFVYV----THISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATN 65
V+N +Y+ ++S L ++A FS +GQI+DI A K +K RGQA+V ++ I SA N
Sbjct: 6 VSNTLYIKRINDNVSINQLILHVFAYFSPYGQIIDISASKAIKKRGQAWVTYQNIESAIN 65
Query: 66 ALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKK 125
A R + G + P+ IQ++K + K+ GT+ + RK+ ++D K +
Sbjct: 66 AKRDLNGIYIFSTPISIQFAKKRNINTLKLNGTYNSYGR--RKEI--IQDNEVRKLTTGP 121
Query: 126 AAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSE 185
M +++ + +P V + + T V Q PN+ILF+ N+PE T +
Sbjct: 122 IPYHWDIDMGGDDEEVTEMV--RPLVQKISQEIVEETPKVTLQAPNKILFIQNIPENTDK 179
Query: 186 MMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAK 245
+L LF QFPGF EVR +P + IAFVE++ E QSA A L+GF+I H + I F+K
Sbjct: 180 AVLDFLFGQFPGFVEVRTLPGKQTIAFVEYKTEEQSAVAIQELNGFEI-ENHHLTIQFSK 238
>gi|340960349|gb|EGS21530.1| hypothetical protein CTHT_0033900 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 250
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 83/252 (32%), Positives = 133/252 (52%), Gaps = 34/252 (13%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
VYV ++ LK++LY IFS++G ++DIVA LK +GQAF++F + A A+
Sbjct: 14 VYVRNLEERVKVDKLKEALYTIFSEYGNVIDIVAKTNLKAKGQAFIVFDKPEPALTAVEE 73
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
+QGF ++KPM++ ++T SD Q E+ EA K + A KE
Sbjct: 74 LQGFELFEKPMQVALARTRSDATV---------------QRYCSEEEFEAHKRHRMAEKE 118
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPP------------APMATAGVPEQ--PPNQILF 175
+ + +A++Q+ + V A P AP A VP++ PPN+ILF
Sbjct: 119 RKKAAEAEEQKRLKRPIPGSGVEAGARPAKSARGPGLKSTAPGAAPVVPDEYLPPNRILF 178
Query: 176 LTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKI-T 234
+ NLP++ + L+ +F +F GF+EVR+VP R IAFVE+E+E + AK G +
Sbjct: 179 VQNLPDDFDKDALTAIFGRFEGFREVRMVPGRSGIAFVEYESEAGAITAKENTAGMPLKN 238
Query: 235 PTHAMKISFAKK 246
MK+++ ++
Sbjct: 239 GEKIMKVTYQRQ 250
>gi|223994655|ref|XP_002287011.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220978326|gb|EED96652.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 267
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 75/241 (31%), Positives = 131/241 (54%), Gaps = 25/241 (10%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKT-----LKMRGQAFVIFKEIASATNALRSMQGF 73
I T LK+SL A+F++ G+++D++ L+ +RGQA+VIF+ ++AT AL + +GF
Sbjct: 39 IKKTLLKRSLLALFTRHGKVLDVICLRGDATGGRSLRGQAWVIFESQSAATAALEAERGF 98
Query: 74 PFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARL 133
F+ +P+ + Y+K SD I+K GT+ ++ K +R++ K A++
Sbjct: 99 VFFGRPLMVNYAKDVSDRIAKRNGTYSKKTKDIREK---------RKLEGDGGGGGDAKM 149
Query: 134 MQAQQQQMQALSVQQPP--------VSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSE 185
+ + A +V P VS P P+P P+ ++ NLP E S+
Sbjct: 150 ARVDGSGVNATTVNDPSSLVKKKEDVSAPT-PSPKTGEITASTTPSSLILAQNLPSECSD 208
Query: 186 MMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAK 245
MML MLF Q G+K ++LV + +A +EF++E Q+ A L+GFK+TP+ + +++
Sbjct: 209 MMLQMLFQQHAGYKGLKLV--KAGMATIEFDSESQATVALKGLNGFKLTPSATLDLTYVA 266
Query: 246 K 246
+
Sbjct: 267 R 267
>gi|425868380|gb|AFY04322.1| sans fille, partial [Coboldia fuscipes]
Length = 116
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 75/144 (52%), Positives = 87/144 (60%), Gaps = 28/144 (19%)
Query: 49 MRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRK 108
MRGQAFV FK IASA+NALR+MQGFPFYD PMRI YSK+DSDVI+++KGTF ERPKK+
Sbjct: 1 MRGQAFVYFKXIASASNALRTMQGFPFYDXPMRIAYSKSDSDVIARMKGTFKERPKKI-- 58
Query: 109 QPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQ 168
K K ++ + SV +TA EQ
Sbjct: 59 -----------KLPKSTNPDDKKEKKKKNXINADGTSVNN------------STA---EQ 92
Query: 169 PPNQILFLTNLPEETSEMMLSMLF 192
PPN ILF TNLPEET+EMMLSMLF
Sbjct: 93 PPNXILFXTNLPEETNEMMLSMLF 116
>gi|256083949|ref|XP_002578197.1| small nuclear ribonucleoprotein U)1aU)2b [Schistosoma mansoni]
gi|353232716|emb|CCD80071.1| putative small nuclear ribonucleoprotein U)1a,U)2b [Schistosoma
mansoni]
Length = 328
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 60/98 (61%), Positives = 78/98 (79%), Gaps = 4/98 (4%)
Query: 11 TNFVYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNA 66
N +Y+ + I +LKKSL A+F QFGQI+DI+ +TLKMRGQAFV+F +I+SA+ A
Sbjct: 57 NNTIYINNMNEKIKCDELKKSLCAVFDQFGQILDIITSRTLKMRGQAFVVFDDISSASTA 116
Query: 67 LRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPK 104
LRSMQGFP Y+KPMRI ++K DSDVI+K KGTF++RPK
Sbjct: 117 LRSMQGFPLYEKPMRIHFAKVDSDVIAKRKGTFVQRPK 154
>gi|295670367|ref|XP_002795731.1| U2 small nuclear ribonucleoprotein B [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226284816|gb|EEH40382.1| U2 small nuclear ribonucleoprotein B [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 253
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 84/236 (35%), Positives = 126/236 (53%), Gaps = 35/236 (14%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
VYV + I LK++L IFS++G I+D+VA LK +GQAF++F + SAT A+
Sbjct: 17 VYVQNLEERIKVEALKEALTEIFSEYGNIIDLVAKTNLKAKGQAFIVFDNVDSATRAIEE 76
Query: 70 MQGFPFYDKPMRIQYSKTDSD-VISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAK 128
+ GF ++KPM + Y+KT SD + K +G E EA K ++ A K
Sbjct: 77 INGFELFEKPMVLDYAKTRSDATVLKEQG----------------EGELEAHKRRRLAEK 120
Query: 129 EQARLMQA-QQQQMQALSVQQPPVSQPAPPAPMATAG-----------VPEQ--PPNQIL 174
E+ + +A + Q+ V P ++ P AG +P++ PPN+IL
Sbjct: 121 ERKQAQEALEAQKKLKRGVVAPGGAEARPSKAAKGAGLKPSNAAAAPVIPDEYLPPNKIL 180
Query: 175 FLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHG 230
FL +P+ + L+ +F +F GFKEVR+VP R IAFVE+E E + +AK A G
Sbjct: 181 FLREIPDSLDQDGLTAVFGRFEGFKEVRMVPGRKGIAFVEYEAETGAISAKEATSG 236
>gi|403373310|gb|EJY86574.1| RNA-binding proteins (RRM domain) [Oxytricha trifallax]
Length = 303
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 80/237 (33%), Positives = 140/237 (59%), Gaps = 19/237 (8%)
Query: 18 HISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYD 77
+ + DLK +LY +FS +G+++++ A K +KMRGQAFV+ ++ +A +A+++++G+ F+
Sbjct: 78 RVKAADLKNALYQLFSNYGEVIEVHAKKNIKMRGQAFVVCQDEEAADSAIQALRGYMFFG 137
Query: 78 KPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQ 137
KP+R+ Y+KT SDV +K++GTF E K R+ E K K+K + +L ++
Sbjct: 138 KPLRLNYAKTRSDVTAKMRGTFDEEVKAKRELRRQHELKQRQLKQKRKIIDKFLKL-RSD 196
Query: 138 QQQMQALSVQQPPVSQPAPPAPMATAG--VPEQPPNQILFLTNLPEETSEMMLSMLFNQ- 194
++MQ L P+ AG V Q N +LF+ L + T +L+ +F+Q
Sbjct: 197 NEEMQNLR---------GGPSIQKIAGFSVNGQESNNLLFIEGLSKRTPTSILNEIFSQA 247
Query: 195 -FPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHA----MKISFAKK 246
GFKEVR + + ++AFVE+E++ ++ A AL G++I ++ + ISFAK+
Sbjct: 248 VIGGFKEVRHIAEK-EVAFVEYEDDHVASIAMNALQGYQIKESNGETTVLSISFAKR 303
>gi|145343730|ref|XP_001416465.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144576690|gb|ABO94758.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 220
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 124/235 (52%), Gaps = 30/235 (12%)
Query: 14 VYVTHISST----DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+YV +++ +L+ +L+A+FS FG+++DIV T ++RGQA++++ A NA++S
Sbjct: 12 LYVNNLNEKVPKQELRAALHAVFSPFGKVLDIVTANTYRLRGQAWIVYDTSMDANNAMQS 71
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
+Q FPFYDKPM+I + T SD I + +G +ER VR VE+ + +K A E
Sbjct: 72 LQSFPFYDKPMKIVVANTTSDAIRRRRGEHIERDGAVR-LSRKVENQERERLRRKNATAE 130
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLS 189
A + P A G+ ++PP+ + + LP T+ ML+
Sbjct: 131 NATRHE-----------------------PKAMDGM-KRPPSTRIAVQGLPGATTTHMLA 166
Query: 190 MLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFA 244
+LF QF G+K+ + D VEF+ + AA L GF++ H++ +SFA
Sbjct: 167 LLFQQFSGYKDATMTRESGD-GEVEFDTTANAVAALNGLQGFRLNANHSLTLSFA 220
>gi|388583280|gb|EIM23582.1| RNA-binding domain-containing protein [Wallemia sebi CBS 633.66]
Length = 263
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 75/237 (31%), Positives = 127/237 (53%), Gaps = 23/237 (9%)
Query: 14 VYVTHISST----DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+YV +++ T +K+SL ++S FG+++D+VA K ++MRGQAF+ F A AL
Sbjct: 46 IYVRNLNETVKLATMKESLRNLYSNFGEVLDVVAHKNIRMRGQAFIAFNNKHVAKRALTD 105
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
Q FP Y +P+++ ++K ++D + R K+ + +E + +K K+ +
Sbjct: 106 TQNFPLYGQPLKVDFAKCNADAV-------FRRQKRTEE----LEKHLQQRKEAKRGLMK 154
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLS 189
R+ Q + + Q P + PPN ILF+ NLP TS+ L
Sbjct: 155 SNRVKAGQPAERDEGTKAAQQKQQQMPDEYL--------PPNVILFIQNLPSGTSKEKLE 206
Query: 190 MLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
+F Q+P EVR++P R DIAFVE+ +E S+ AK AL+ ++I +K++FA++
Sbjct: 207 EIFGQYPNLAEVRVIPARPDIAFVEYMDESSSSVAKDALNNYQIESDKPIKVTFARQ 263
>gi|367045436|ref|XP_003653098.1| hypothetical protein THITE_2115135 [Thielavia terrestris NRRL 8126]
gi|347000360|gb|AEO66762.1| hypothetical protein THITE_2115135 [Thielavia terrestris NRRL 8126]
Length = 248
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 86/246 (34%), Positives = 133/246 (54%), Gaps = 21/246 (8%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
VYV ++ LK++L A+FS++G ++DIVA LK +GQAFV+F + SA A+
Sbjct: 11 VYVRNLEERVKPEPLKQALRAVFSEYGNVIDIVAKTNLKAKGQAFVVFDKPESALAAIEE 70
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKA--- 126
+QGF ++KPM++ ++T SD + GT E R++ A+K KKKA
Sbjct: 71 VQGFELFEKPMQVALARTRSDATVMLHGTEEEFDAHKRRR--------MAEKDKKKALES 122
Query: 127 AKEQARL---MQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQ--PPNQILFLTNLPE 181
A+EQ RL M ++ A + + A VP++ PPN+ILF+ NLP+
Sbjct: 123 AEEQKRLKRPMPGAGAEVGARPAKNARGAGLKATGAGPAAVVPDEYLPPNRILFVQNLPD 182
Query: 182 ETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHA-MK 240
+ + L+ +F F GF+EVR VP R IAFVE+E E + AK G + MK
Sbjct: 183 DFDKDALTAIFGHFEGFREVRTVPGRSGIAFVEYETEAGAITAKENTAGMALKGGEKIMK 242
Query: 241 ISFAKK 246
+++ ++
Sbjct: 243 VTYQRQ 248
>gi|313238053|emb|CBY13172.1| unnamed protein product [Oikopleura dioica]
Length = 203
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 84/227 (37%), Positives = 124/227 (54%), Gaps = 43/227 (18%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
I +L + LYA+FS +G ++DI+ K K+RGQAF+ +K+I+ A NAL+ MQGFPFY+K
Sbjct: 19 IKKIELTRQLYAMFSTYGMVLDIMVSKAPKLRGQAFITYKDISDAANALKRMQGFPFYEK 78
Query: 79 PMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQ 138
M I ++K +S VI++ K K P K ++ AKE
Sbjct: 79 AMMISFAKRESHVITQAK-----------KYVPP--------KDERTLAKE--------- 110
Query: 139 QQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGF 198
+ A AG E+P I ++ NLP+E +E ML++LF+QFPGF
Sbjct: 111 -------------TNAKLAAKKKPAGDEEEPAATI-YVENLPDEANESMLNLLFSQFPGF 156
Query: 199 KEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAK 245
K+ R +P AFVEF + + +AK AL GFK+TP +K+++AK
Sbjct: 157 KKSRPIPAGGK-AFVEFADPGAATSAKDALQGFKVTPDRPIKLTYAK 202
>gi|281500860|pdb|3K0J|A Chain A, Crystal Structure Of The E. Coli Thim Riboswitch In
Complex With Thiamine Pyrophosphate And The U1a
Crystallization Module
gi|281500861|pdb|3K0J|B Chain B, Crystal Structure Of The E. Coli Thim Riboswitch In
Complex With Thiamine Pyrophosphate And The U1a
Crystallization Module
gi|281500862|pdb|3K0J|C Chain C, Crystal Structure Of The E. Coli Thim Riboswitch In
Complex With Thiamine Pyrophosphate And The U1a
Crystallization Module
gi|281500863|pdb|3K0J|D Chain D, Crystal Structure Of The E. Coli Thim Riboswitch In
Complex With Thiamine Pyrophosphate And The U1a
Crystallization Module
Length = 96
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 60/86 (69%), Positives = 76/86 (88%), Gaps = 4/86 (4%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LKKSL+AIFS+FGQI+DI+ ++LKMRGQAFVIFKE++SATNALRS
Sbjct: 11 IYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRS 70
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKI 95
MQGFPFYDKPMRIQY+KTDSD+I+K+
Sbjct: 71 MQGFPFYDKPMRIQYAKTDSDIIAKM 96
>gi|328854301|gb|EGG03434.1| hypothetical protein MELLADRAFT_109264 [Melampsora larici-populina
98AG31]
Length = 364
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 83/244 (34%), Positives = 128/244 (52%), Gaps = 26/244 (10%)
Query: 24 LKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKP---- 79
LK++L + FG ++D+VA ++++MRGQAFV F E A A++ ++GFP Y KP
Sbjct: 126 LKQTLKNLLKNFGPVLDVVAHQSVRMRGQAFVAFPEREMAAKAVKEVKGFPLYGKPYRTL 185
Query: 80 MRIQYSKTDSDVISKIKGTFMERPKKV---RKQPAPVEDPAEAKKSKKKAAKEQARLMQA 136
+R+ Y T S I+ F P RK P + E + +KKK ++ + L +
Sbjct: 186 LRLLYYATSSYEIA-----FARTPADAVVKRKTPDEYDTFKEERLTKKKRSRRENPLRKK 240
Query: 137 Q--QQQMQALSVQQPPVSQPAPPAPMATAG----------VPE--QPPNQILFLTNLPEE 182
Q++ ++ + + P ATA +P+ QPPN+ILF+ NLPE
Sbjct: 241 AFAQKEAARIAAESAIAAGGVAPTTSATAASTNSGRRIVQMPDEYQPPNKILFVQNLPEN 300
Query: 183 TSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKIS 242
+ L +LF Q+ EVR +P R IAFVE+ + S AK ALH +K H +K++
Sbjct: 301 AGKDALEVLFKQYANLVEVRTIPGRATIAFVEYTDATSSGVAKDALHNYKFDGEHKIKVT 360
Query: 243 FAKK 246
FAK+
Sbjct: 361 FAKQ 364
>gi|401887165|gb|EJT51169.1| RNA binding protein [Trichosporon asahii var. asahii CBS 2479]
Length = 269
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 88/227 (38%), Positives = 130/227 (57%), Gaps = 19/227 (8%)
Query: 24 LKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83
+K++L ++F + + IVA + ++MRGQAFV F++ A+A A R + FP Y KP+ I
Sbjct: 58 MKETLASLFKPYHPLGPIVAHRNVRMRGQAFVSFRDKATAALAQRDVNEFPLYGKPIIID 117
Query: 84 YSKTDSD-VISKIKGT-FMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQM 141
++KT SD VI K G +E KK R + D KK+K+K +AR + A+ +
Sbjct: 118 FAKTRSDAVIEKQDGEEALEAWKKER-----LAD----KKTKRKTNVIRARNI-AKHKAG 167
Query: 142 QALSVQQPPVSQPAPPAPMATAGVPEQ--PPNQILFLTNLPEETSEMMLSMLFNQFPGFK 199
S P + P M P++ PPN +LF+ NLPE T++ L +F Q+PG
Sbjct: 168 DDTSAPSGPGAAKKPKLQM-----PDEYLPPNNVLFVQNLPEGTTQDDLREVFEQYPGLV 222
Query: 200 EVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
E+R + + DIAFVE+ +E SA AK ALH FKI MK++FA+K
Sbjct: 223 EIRTIAAKKDIAFVEYADETASAVAKDALHNFKIDGETKMKVTFARK 269
>gi|425868411|gb|AFY04336.1| sans fille, partial [Ceratitis capitata]
Length = 116
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 80/145 (55%), Positives = 91/145 (62%), Gaps = 29/145 (20%)
Query: 48 KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVR 107
KM GQAFVIFKEI SA+NALR+MQGFPFYDKPMRI YSKTDSD+++KIKGTF ERPKKV+
Sbjct: 1 KMXGQAFVIFKEIGSASNALRTMQGFPFYDKPMRIAYSKTDSDIVAKIKGTFKERPKKVK 60
Query: 108 KQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPE 167
+ K KK + E P +Q E
Sbjct: 61 PPKPVQNTEDKKDKKKKSSNAENTN-----------------PNTQ------------TE 91
Query: 168 QPPNQILFLTNLPEETSEMMLSMLF 192
QPPNQILFLTNLP+ET+EMMLSMLF
Sbjct: 92 QPPNQILFLTNLPQETNEMMLSMLF 116
>gi|266618701|pdb|3IWN|C Chain C, Co-Crystal Structure Of A Bacterial C-Di-Gmp Riboswitch
gi|266618702|pdb|3IWN|D Chain D, Co-Crystal Structure Of A Bacterial C-Di-Gmp Riboswitch
Length = 91
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 60/85 (70%), Positives = 75/85 (88%), Gaps = 4/85 (4%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LKKSL+AIFS+FGQI+DI+ ++LKMRGQAFVIFKE++SATNALRS
Sbjct: 7 IYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRS 66
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISK 94
MQGFPFYDKPMRIQY+KTDSD+I+K
Sbjct: 67 MQGFPFYDKPMRIQYAKTDSDIIAK 91
>gi|282403767|pdb|3L3C|A Chain A, Crystal Structure Of The Bacillus Anthracis Glms
Ribozyme Bound To Glc6p
gi|282403770|pdb|3L3C|B Chain B, Crystal Structure Of The Bacillus Anthracis Glms
Ribozyme Bound To Glc6p
gi|282403773|pdb|3L3C|C Chain C, Crystal Structure Of The Bacillus Anthracis Glms
Ribozyme Bound To Glc6p
gi|282403776|pdb|3L3C|D Chain D, Crystal Structure Of The Bacillus Anthracis Glms
Ribozyme Bound To Glc6p
Length = 90
Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 60/85 (70%), Positives = 75/85 (88%), Gaps = 4/85 (4%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LKKSL+AIFS+FGQI+DI+ ++LKMRGQAFVIFKE++SATNALRS
Sbjct: 6 IYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRS 65
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISK 94
MQGFPFYDKPMRIQY+KTDSD+I+K
Sbjct: 66 MQGFPFYDKPMRIQYAKTDSDIIAK 90
>gi|400600067|gb|EJP67758.1| RNA recognition domain-containing protein [Beauveria bassiana ARSEF
2860]
Length = 244
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 79/237 (33%), Positives = 130/237 (54%), Gaps = 30/237 (12%)
Query: 24 LKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83
L +L +FS+FG+++D+VA LK +GQAFV+F ASA A+ + GFP +DKPMR+
Sbjct: 24 LTDALRTVFSEFGRVVDVVAKTNLKAKGQAFVVFDAPASAREAVEEIDGFPLFDKPMRLA 83
Query: 84 YSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQA 143
++T SD ++ G+ E EA K + A KE+ + ++A +
Sbjct: 84 VARTRSDKTVEMNGSAEE---------------LEAHKQHRLAEKEKKKAIEAAEGTKHG 128
Query: 144 LSVQQPPV-----SQPAPPAPMATAGV------PEQ--PPNQILFLTNLPEETSEM-MLS 189
S+ A P+ + + V P++ PPN+ILFL N+P+E ++ L+
Sbjct: 129 GKRGAGAGADGRPSKIAKPSGLKSTSVAQAAVIPDEYLPPNKILFLQNVPDEYHDVEALA 188
Query: 190 MLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
+F +F GF+EVRLVP R IAFVE++ E + AAK + G + + +K+++ ++
Sbjct: 189 GIFGRFDGFREVRLVPGRRGIAFVEYDAEQGAVAAKESTAGMTLGDKN-IKVTYQRQ 244
>gi|116195978|ref|XP_001223801.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
gi|88180500|gb|EAQ87968.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
Length = 247
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 87/246 (35%), Positives = 133/246 (54%), Gaps = 21/246 (8%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
VYV ++ LK++L A+FS++G ++DIVA LK +GQAFV+F + SA A+
Sbjct: 10 VYVRNLEERVKPEPLKEALRALFSEYGNVIDIVAKTNLKAKGQAFVVFDKPESAQAAIED 69
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKA--- 126
+ GF +DKPM++ ++T SD G E R++ A+K KKKA
Sbjct: 70 IHGFELFDKPMQLALARTRSDATVMQTGNEEEFDAHKRRRM--------AEKDKKKALET 121
Query: 127 AKEQARL---MQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQ--PPNQILFLTNLPE 181
A+EQ RL M ++ A + + ATA VP++ PPN+ILF+ NLP+
Sbjct: 122 AEEQKRLKRPMPGAAAEVGARPAKNARGAGLKSTGAGATAVVPDEYLPPNRILFVQNLPD 181
Query: 182 ETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKI-TPTHAMK 240
+ + L+ +F +F GF+EVR VP R IAFVE+E E + AK G + MK
Sbjct: 182 DFDKDALNAIFGRFEGFREVRTVPGRSGIAFVEYEAEAGAITAKENTAGMPLKNGEKMMK 241
Query: 241 ISFAKK 246
+++ ++
Sbjct: 242 VTYQRQ 247
>gi|145536596|ref|XP_001454020.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124421764|emb|CAK86623.1| unnamed protein product [Paramecium tetraurelia]
Length = 228
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 128/238 (53%), Gaps = 36/238 (15%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+YVT ++ DLK LY +FSQFG+++ +V KT K+RGQAF++F+ I ATNA +
Sbjct: 22 LYVTGLNDKIKLEDLKFILYILFSQFGEVLQMVMKKTQKLRGQAFIVFQNITYATNAKAA 81
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRK-QPAPVEDPAEAKKSKKKAAK 128
+ G YDKP+ I+++ S + +I+G F + K+ ++ QP + + KK KK K
Sbjct: 82 LSGMIVYDKPLIIEFAYKKSVIFDRIEGKFYYKQKQHKELQPTLPNELMKEKKQKKFDEK 141
Query: 129 EQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMML 188
Q ++ + N +L + +LP +E+ML
Sbjct: 142 IQ------------------------------NSSNFNQGEINNVLLIESLPPFVTEIML 171
Query: 189 SMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
S LF Q+PG+ ++L+P R +AFVE++N+ Q+ A L FKITP +K+ +AKK
Sbjct: 172 SELFRQYPGYSLIKLIPAR-GLAFVEYQNDDQATVALKGLSNFKITPECQLKVKYAKK 228
>gi|358396862|gb|EHK46237.1| hypothetical protein TRIATDRAFT_307061 [Trichoderma atroviride IMI
206040]
Length = 242
Score = 130 bits (326), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 76/221 (34%), Positives = 127/221 (57%), Gaps = 31/221 (14%)
Query: 24 LKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83
L ++L IFS+FG ++DIVA + LK +GQAF++F + ++A NA+ ++GF + KP+R+
Sbjct: 24 LSEALKTIFSEFGNVIDIVAKRNLKAKGQAFIVFDQPSAAQNAIEEVEGFELFGKPLRVA 83
Query: 84 YSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQ- 142
++ SD +I + +D E K ++A K++ + ++A +Q Q
Sbjct: 84 MARMQSDRTVEINCS---------------KDELETHKRHRQAEKDKRKALEAADEQRQL 128
Query: 143 -----ALSVQQPPVSQPAPPAPM------ATAGVPEQ--PPNQILFLTNLPEETSEMMLS 189
A + +P S+ A P+ + A+A VP++ PPN+ILF+ N+P+E L+
Sbjct: 129 KRGAAAAAEARP--SKSAKPSGLKSTSAPASAVVPDEYLPPNKILFIQNVPDEYDIDGLN 186
Query: 190 MLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHG 230
+F +F GF+E+RLVP R IAFVE++NE + AK G
Sbjct: 187 AIFGRFDGFREIRLVPGRRGIAFVEYQNEQGAITAKENTAG 227
>gi|146183888|ref|XP_001027266.2| U1 small nuclear ribonucleoprotein A [Tetrahymena thermophila]
gi|146143436|gb|EAS07024.2| U1 small nuclear ribonucleoprotein A [Tetrahymena thermophila
SB210]
Length = 247
Score = 130 bits (326), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 81/228 (35%), Positives = 123/228 (53%), Gaps = 28/228 (12%)
Query: 11 TNFVYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNA 66
N +Y+ + IS DLK+ L+ +FS++G I++I A K ++MRGQAFV+F++IA A A
Sbjct: 31 NNTIYINNLNERISIDDLKQELFKLFSEYGSILEIKAKKNIRMRGQAFVVFEQIACAQKA 90
Query: 67 LRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKK- 125
+ ++ FY K + + ++KT SD I K +G + R K+ +E+ KK K+
Sbjct: 91 IEALNRKNFYGKALHLNFAKTKSDAILKREGAYAPRQPKIFNAADFIEERQSNKKQKENL 150
Query: 126 AAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSE 185
KE A A Q +Q +Q P+ LFL NLP ++
Sbjct: 151 KNKESATAKLAAQPLVQNTIIQ----------------------PHHTLFLENLPINSNT 188
Query: 186 MMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKI 233
++ F FPGFKEVRLVP + +AFVE+E+E ++ AA +L FKI
Sbjct: 189 EVIKAFFATFPGFKEVRLVPQKR-VAFVEYEDENKATAALASLQSFKI 235
>gi|118396628|ref|XP_001030652.1| U1 small nuclear ribonucleoprotein A [Tetrahymena thermophila]
gi|89284963|gb|EAR82989.1| U1 small nuclear ribonucleoprotein A [Tetrahymena thermophila
SB210]
Length = 270
Score = 130 bits (326), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 135/227 (59%), Gaps = 21/227 (9%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
I+ D+K LY +F QFG+I+DI+ K+ +RGQA++IFK+I +ATNA +++ GF F+DK
Sbjct: 64 INQEDMKYGLYFLFQQFGEILDIILKKSNTLRGQAWIIFKDITAATNAKKNLNGFLFFDK 123
Query: 79 PMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQ 138
++I ++K S+++ K++G ++ + K+ ++ + E ++ +++ + Q QQ
Sbjct: 124 ELKINFAKQRSEILDKLEGRWVPKKKQKKENNNNAKKVGE----QEIGTEQKEQQQQKQQ 179
Query: 139 QQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGF 198
Q L++QQ ++Q PN +L L +LP + +L LF Q+PGF
Sbjct: 180 LQQIPLNIQQNELNQ----------------PNNVLILEDLPSFVTTDILKALFGQYPGF 223
Query: 199 KEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAK 245
KEVRL+ R +AFVEF E ++ A L F++TP +K+++AK
Sbjct: 224 KEVRLIAPRK-VAFVEFSQEDEATVALNGLQNFQLTPQVFLKLNYAK 269
>gi|401878862|gb|AFQ30723.1| putative sansfille, partial [Cecidostiba semifascia]
gi|401878866|gb|AFQ30725.1| putative sansfille, partial [Cecidostiba semifascia]
Length = 115
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 78/130 (60%), Positives = 91/130 (70%), Gaps = 15/130 (11%)
Query: 55 VIFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVE 114
VIFKEIASATNALRSMQGFPFYDKPMRI YSKTDSD+I+K+KGTF ERPKK ++ P
Sbjct: 1 VIFKEIASATNALRSMQGFPFYDKPMRINYSKTDSDIIAKMKGTFTERPKKPKRV-IPAA 59
Query: 115 DPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQIL 174
D ++ ++ QA+QQQM P +Q A +A A VPEQPPNQIL
Sbjct: 60 D-------EEAKKAKKRAKEQAKQQQMG----YTPGAAQ---HAGLANAAVPEQPPNQIL 105
Query: 175 FLTNLPEETS 184
FLTNLP+ETS
Sbjct: 106 FLTNLPDETS 115
>gi|425868435|gb|AFY04347.1| sans fille, partial [Exorista larvarum]
Length = 113
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 84/144 (58%), Positives = 94/144 (65%), Gaps = 33/144 (22%)
Query: 51 GQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQP 110
GQAFVIFKEIASA+NALR+MQGFPFYDKPMRI Y+KTDSDV++KIKGTF ERPKK++
Sbjct: 1 GQAFVIFKEIASASNALRTMQGFPFYDKPMRIAYAKTDSDVVAKIKGTFKERPKKLKPPK 60
Query: 111 --APVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQ 168
APVED + KK A E A P +Q EQ
Sbjct: 61 PVAPVEDKKDKKKKASNA--ENAN-----------------PNTQ------------TEQ 89
Query: 169 PPNQILFLTNLPEETSEMMLSMLF 192
PPNQILFLTNLPEET+EMML MLF
Sbjct: 90 PPNQILFLTNLPEETNEMMLPMLF 113
>gi|225684437|gb|EEH22721.1| U2 small nuclear ribonucleoprotein B [Paracoccidioides brasiliensis
Pb03]
Length = 1484
Score = 129 bits (325), Expect = 9e-28, Method: Composition-based stats.
Identities = 81/225 (36%), Positives = 123/225 (54%), Gaps = 31/225 (13%)
Query: 24 LKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83
LK++L IFS++G I+DIVA LK +GQAF++F + SAT A+ + GF ++KPM +
Sbjct: 1262 LKEALTEIFSEYGNIIDIVAKTNLKAKGQAFIVFDNVDSATRAIEEINGFELFEKPMVLD 1321
Query: 84 YSKTDSD-VISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQA-QQQQM 141
Y+KT SD + K +G E EA K ++ A KE+ + +A + Q+
Sbjct: 1322 YAKTRSDATVLKEQG----------------EGELEAHKRRRLAEKERKQAQEALEAQKK 1365
Query: 142 QALSVQQPPVSQPAPPAPMATAG-----------VPEQ--PPNQILFLTNLPEETSEMML 188
V P ++ P + AG +P++ PPN+ILFL +P+ + L
Sbjct: 1366 LKRGVVAPGGAEARPSKAVKGAGLKPSNAAAAPVIPDEYLPPNKILFLREIPDSLDQDGL 1425
Query: 189 SMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKI 233
+ +F +F GFKEVR+VP R IAFVE+E E + +AK A G +
Sbjct: 1426 TAVFGRFEGFKEVRMVPGRKGIAFVEYEAETGAISAKEATSGMPL 1470
>gi|258567630|ref|XP_002584559.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237906005|gb|EEP80406.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 1150
Score = 129 bits (324), Expect = 1e-27, Method: Composition-based stats.
Identities = 79/231 (34%), Positives = 128/231 (55%), Gaps = 18/231 (7%)
Query: 24 LKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83
LK++L IF+++G I++IVA LK +GQAF++F + SAT A+ + GF ++KPM +
Sbjct: 930 LKEALSEIFAEYGSILEIVAKSNLKAKGQAFIVFDNVDSATRAIEEINGFELFEKPMVLD 989
Query: 84 YSKTDSD--VISKIKGTFMERPKKVR---KQPAPVEDPAEAKKSKKKAAKEQARLMQAQQ 138
Y+KT SD V+ + +E K+ R K+ ++ E +K K+ A A A+
Sbjct: 990 YAKTRSDATVLKEAGEQELETHKRRRLAEKERKQAQEALENQKKLKRPAGAAADTRPAKT 1049
Query: 139 QQMQALSVQQPPVSQPAPPAPMATAGVPEQ--PPNQILFLTNLPEETSEMMLSMLFNQFP 196
+ L P A P +P++ PPN+ILFL +P+ L+ +F +F
Sbjct: 1050 TRGAGLK----PTGAAAAPV------IPDEYLPPNKILFLREVPDSYDSAGLTAIFGRFE 1099
Query: 197 GFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPT-HAMKISFAKK 246
GFKEVR+VP R IAFVE+E+E + +AK A G + M++++ ++
Sbjct: 1100 GFKEVRMVPGRKGIAFVEYESEAGAISAKEATSGMTLGENGKPMRVTYQRQ 1150
>gi|367022286|ref|XP_003660428.1| hypothetical protein MYCTH_2314150 [Myceliophthora thermophila ATCC
42464]
gi|347007695|gb|AEO55183.1| hypothetical protein MYCTH_2314150 [Myceliophthora thermophila ATCC
42464]
Length = 247
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 88/252 (34%), Positives = 133/252 (52%), Gaps = 33/252 (13%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
VYV ++ LK++L A+FS+FG ++DIVA LK +GQAFV+F + SA A+
Sbjct: 10 VYVRNLEERVKPEPLKEALRAVFSEFGNVIDIVAKTNLKAKGQAFVVFDKPESAHAAIEE 69
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
+QGF ++KPM++ ++T SD G E R++ A+K KKKA
Sbjct: 70 VQGFELFEKPMQVALARTRSDATVLRTGNAEEFDAHKRRRI--------AEKDKKKA--- 118
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMA-------TAG-----VPEQ--PPNQILF 175
L A++Q+ + P A PA A T G VP++ PPN+ILF
Sbjct: 119 ---LESAEEQKRLKRPMPGGPAEAGARPAKNARGAGLKSTGGGPAAVVPDEYLPPNRILF 175
Query: 176 LTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITP 235
+ NLP++ + L+ +F +F GF+EVR VP R IAFVE+E E + AK G +
Sbjct: 176 VQNLPDDMDKDALTAIFGRFEGFREVRTVPGRSGIAFVEYEAEAGAITAKENTAGMPLKN 235
Query: 236 THA-MKISFAKK 246
MK+++ ++
Sbjct: 236 GEKLMKVTYQRQ 247
>gi|390601524|gb|EIN10918.1| RNA-binding domain-containing protein [Punctularia strigosozonata
HHB-11173 SS5]
Length = 247
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 80/235 (34%), Positives = 126/235 (53%), Gaps = 15/235 (6%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
++ +L+ LYA+F+ +G+++D++A KT KMRGQAF++F E+A AT+ALR+ +G FYDK
Sbjct: 17 VNKEELRAQLYALFTTYGKVIDVIASKTPKMRGQAFLVFSELAGATSALRACEGMVFYDK 76
Query: 79 PMRIQYSKTDSDVISKIKGTFMERPKKVRKQP--APVEDPAEAKKSKKKAAKEQARLMQA 136
P+RIQY+KT S K E P V P AP + ++K ++ E R ++
Sbjct: 77 PLRIQYAKTKSYATLK-----KEDPNFVPPNPAHAPQGVFSASEKRGREDDSENIRPVKK 131
Query: 137 QQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFP 196
++Q + + P E P+ L +NLP+E +E MLS+LF Q+
Sbjct: 132 EKQDDGSDDEEMEIEDDDDAPPKQQHQQQSEVQPSARLMASNLPQEVTEDMLSVLFQQYQ 191
Query: 197 GFKEVRLVPNRH--------DIAFVEFENEMQSAAAKLALHGFKITPTHAMKISF 243
GF V++ P +A+V FE+ + AK ALHGF + M + +
Sbjct: 192 GFLSVQVSPTATPDATGQAIKMAYVVFESPQLAMVAKDALHGFNLKKNWPMTVVY 246
>gi|171690714|ref|XP_001910282.1| hypothetical protein [Podospora anserina S mat+]
gi|170945305|emb|CAP71417.1| unnamed protein product [Podospora anserina S mat+]
Length = 248
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 86/246 (34%), Positives = 135/246 (54%), Gaps = 21/246 (8%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
VYV ++ LK++L IFS++G ++DIV LK +GQAFV+F + SA A+
Sbjct: 11 VYVRNLEERVKPEPLKEALMVIFSEYGNVIDIVVKTNLKAKGQAFVVFDKPESALTAIEE 70
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKA--- 126
+QGF ++KPM++ ++T SD K G E R++ A+K KKKA
Sbjct: 71 VQGFELFEKPMQVALARTRSDATVKQTGNEEEFDAHKRRRM--------AEKDKKKALET 122
Query: 127 AKEQARLMQAQQQQMQALSVQQPPVSQPA---PPAPMATAGVPEQ--PPNQILFLTNLPE 181
A+EQ RL + A+S + ++ A A A VP++ PPN+ILF+ NLP+
Sbjct: 123 AEEQKRLKRPLPGAETAVSGRPTKNARGAGLKSTGAGAAAVVPDEYLPPNRILFVQNLPD 182
Query: 182 ETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKI-TPTHAMK 240
+ + L+ +F++F GF+EVR VP R IAFVE++ E + AK G + MK
Sbjct: 183 DFGKDELTGIFSRFEGFREVRTVPGRSGIAFVEYDAEAGAITAKENTAGMALKNGEKTMK 242
Query: 241 ISFAKK 246
+++ ++
Sbjct: 243 VTYQRQ 248
>gi|145538301|ref|XP_001454856.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124422633|emb|CAK87459.1| unnamed protein product [Paramecium tetraurelia]
Length = 228
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 127/238 (53%), Gaps = 36/238 (15%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+YVT ++ DLK LY +FSQFG+++ IV KT K+RGQAF++F+ I ATNA +
Sbjct: 22 LYVTGLNDKIKLEDLKFVLYILFSQFGEVLQIVMKKTQKLRGQAFIVFQNITYATNAKSA 81
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRK-QPAPVEDPAEAKKSKKKAAK 128
+ G YDKP+ I+++ S + +++G F + K+ ++ QP P E K KK
Sbjct: 82 LTGMMVYDKPLIIEFAYKKSVIFDRMEGKFYYKQKQQKELQPTL---PTELVKEKK---- 134
Query: 129 EQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMML 188
Q + P+ G N +L + +LP +E+ML
Sbjct: 135 -------------------QKKLEDKLNNNPVFNQG----EVNNVLLIESLPPFVTEIML 171
Query: 189 SMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
S LF Q+PG+ ++L+ R +AFVE++N+ Q+ A L+ FK+TP +K+ +AKK
Sbjct: 172 SELFRQYPGYSLIKLISAR-GLAFVEYQNDDQATVALKGLNNFKVTPECQLKVKYAKK 228
>gi|405123760|gb|AFR98523.1| RNA binding protein [Cryptococcus neoformans var. grubii H99]
Length = 284
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 78/225 (34%), Positives = 121/225 (53%), Gaps = 17/225 (7%)
Query: 24 LKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83
+K++LY +F + + I+A ++MRGQAFV F +I SA A + + FP Y K ++IQ
Sbjct: 75 MKETLYNLFKPYRPLQPIIAHHNIRMRGQAFVSFPDIESANEARKDVNEFPLYGKSIQIQ 134
Query: 84 YSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQA 143
++K SD I K KG E E+ + + +KK ++ L Q Q +++A
Sbjct: 135 FAKGLSDSIVKRKGDERE-----------FEEHTKRRLEEKKLKRKNNPLRQKSQAKLRA 183
Query: 144 LSVQQPPVSQPAPPAPMATAGVPEQ--PPNQILFLTNLPEETSEMMLSMLFNQFPGFKEV 201
+ P A +P++ PPN +LF+ NLP+ T+ L +F PG E+
Sbjct: 184 DTT----AGTAGPAAKKQRLQMPDEYLPPNSVLFVQNLPDGTTSEDLREVFEVHPGLIEI 239
Query: 202 RLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
R +P + DIAFVEF +E + AK ALH FKI MK+++A+K
Sbjct: 240 RTIPAKKDIAFVEFADEGAATIAKDALHNFKIDGETKMKVTYARK 284
>gi|401878864|gb|AFQ30724.1| putative sansfille, partial [Cecidostiba semifascia]
Length = 115
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 77/130 (59%), Positives = 90/130 (69%), Gaps = 15/130 (11%)
Query: 55 VIFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVE 114
VIFKEIASATNALRSMQGFPFYDKPMRI YSKTDSD+I+K+KGTF ERPKK ++ P
Sbjct: 1 VIFKEIASATNALRSMQGFPFYDKPMRINYSKTDSDIIAKMKGTFTERPKKPKRV-IPAA 59
Query: 115 DPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQIL 174
D ++ ++ QA+QQQM P +Q +A A VPEQPPNQIL
Sbjct: 60 D-------EEAKKAKKRAKEQAKQQQMGYT----PGAAQ---HTGLANAAVPEQPPNQIL 105
Query: 175 FLTNLPEETS 184
FLTNLP+ETS
Sbjct: 106 FLTNLPDETS 115
>gi|346326132|gb|EGX95728.1| small nuclear ribonucleoprotein [Cordyceps militaris CM01]
Length = 267
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 86/252 (34%), Positives = 133/252 (52%), Gaps = 17/252 (6%)
Query: 11 TNFVYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNA 66
T VYV ++ L +L IFS+FGQ++DIVA LK +GQAFV+F ASA A
Sbjct: 17 TRNVYVQNLEERVKPEPLTSALRTIFSEFGQVVDIVAKTNLKAKGQAFVVFDTPASAQEA 76
Query: 67 LRSMQGFPFYDKPMRIQYSKTDSDVISKIKGT--FMERPKKVRKQPAPVED---PAEAKK 121
+ + GFP +DKPMR+ +++ SD ++ G+ +E K+ R E+ A
Sbjct: 77 VDEINGFPLFDKPMRLAMARSYSDKTVEMSGSPAQLEAHKQHRLAEKGCEEEMLTAILVT 136
Query: 122 SKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMAT-----AGVPEQ--PPNQIL 174
KKKA + Q ++ + P P +T A +P++ PPN+IL
Sbjct: 137 EKKKAIEAAEGPRQGKRGAAGVVGADGRPSKIGKPSGLKSTSVAQAAVIPDEYLPPNKIL 196
Query: 175 FLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKIT 234
FL N+P+E L+ LF +F GF+EVR+VP R IAFVE++ E + AK G +
Sbjct: 197 FLQNVPDEYDVEGLTALFGRFEGFREVRVVPGRRGIAFVEYDAEQGATEAKENTAGMTLG 256
Query: 235 PTHAMKISFAKK 246
+ +K+++ ++
Sbjct: 257 DRN-IKVTYQRQ 267
>gi|329317647|gb|AEB90958.1| putative sansfille [Mesopolobus amaenus]
gi|329317649|gb|AEB90959.1| putative sansfille [Mesopolobus amaenus]
gi|329317651|gb|AEB90960.1| putative sansfille [Mesopolobus amaenus]
Length = 115
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 76/130 (58%), Positives = 88/130 (67%), Gaps = 15/130 (11%)
Query: 55 VIFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVE 114
VIFKEIASATNALRSMQGFPFYDKPMRI YSKTDSD+I+K+KGTF ERPKK ++ P
Sbjct: 1 VIFKEIASATNALRSMQGFPFYDKPMRINYSKTDSDIIAKMKGTFTERPKKPKRV-IPAA 59
Query: 115 DPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQIL 174
D ++ ++ QA+QQQM V +A A VPEQPPNQIL
Sbjct: 60 D-------EEAKKAKKRAKEQAKQQQMGYTPGAAQHVG-------LANAAVPEQPPNQIL 105
Query: 175 FLTNLPEETS 184
FLTNLP+ETS
Sbjct: 106 FLTNLPDETS 115
>gi|82914978|ref|XP_728920.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23485600|gb|EAA20485.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 189
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 76/224 (33%), Positives = 111/224 (49%), Gaps = 55/224 (24%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
I+ DLK LY F +G ++D+V K+ K+RGQAFVIF IAS+T A ++++G PF +K
Sbjct: 21 INVNDLKYLLYEFFCPYGNVLDVVIKKSNKLRGQAFVIFSNIASSTLAYKNLKGKPFLNK 80
Query: 79 PMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQ 138
+ I Y+KT S +I K+ GT+ P+ K+ K A + ++ Q
Sbjct: 81 NININYAKTKSKIIEKLDGTY-----------NPI-------KNYKSANNYENKINQFT- 121
Query: 139 QQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGF 198
LF+ NLP+E ++ L +LFNQ+PGF
Sbjct: 122 -----------------------------------LFVQNLPDEINKNALEILFNQYPGF 146
Query: 199 KEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKIS 242
EVR +P R+ +AF++F + A L F ITP H MKIS
Sbjct: 147 SEVRYIPGRN-VAFIDFNSYQNGEVAMNGLQSFXITPDHPMKIS 189
>gi|46116888|ref|XP_384462.1| hypothetical protein FG04286.1 [Gibberella zeae PH-1]
Length = 242
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 78/231 (33%), Positives = 122/231 (52%), Gaps = 21/231 (9%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
VYV ++ L +L IFS+FG ++DIVA K L+ +GQAF+++ SA A+
Sbjct: 10 VYVQNLEERVKLETLVDALRTIFSEFGNVVDIVAKKNLRAKGQAFIVYDNAESAQEAIEE 69
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
+ GF +DKPM++ +++ SD ++ G+ E R + +A+K K+KA E
Sbjct: 70 INGFDLFDKPMKLALARSRSDKTVELTGSQEELENHKRHR--------QAEKDKRKA--E 119
Query: 130 QARLMQAQQQQMQALSVQQPPVSQP------APPAPMATAGVPE-QPPNQILFLTNLPEE 182
+A Q Q + + + P + A AT+ + E PPN+ILF+ NLPE+
Sbjct: 120 EAAEEQRQSNKRASGATDNRPAKAAKSSGLKSTSAAAATSVLDEFLPPNKILFVQNLPED 179
Query: 183 TSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKI 233
L+ +F +F G +EVRLVP R IAF+E+E E + AK G +
Sbjct: 180 YDIEALTSVFGRFEGLREVRLVPTRRGIAFIEYETEQGAITAKENTAGLNL 230
>gi|342321005|gb|EGU12943.1| RNA binding protein [Rhodotorula glutinis ATCC 204091]
Length = 298
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 81/237 (34%), Positives = 129/237 (54%), Gaps = 25/237 (10%)
Query: 24 LKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83
+K+SL +F ++G+++ + A + ++MRGQAFV +A A++ +Q FP Y KPM++
Sbjct: 72 MKQSLKVLFREYGRVLGVTAHRNVRMRGQAFVTLDSKEAAVKAVKEVQKFPLYGKPMQLT 131
Query: 84 YSKTDSD-VISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQ 142
+++T+SD ++ K ME KK R E KK ++ + + + A+ Q
Sbjct: 132 FARTESDALVQKRHPDDMEAHKKAR---------LERKKQSRRDDPARRKKLAAKAAAKQ 182
Query: 143 ALSVQQPPVSQPAPPAPMATAGVPEQ--PPNQILFLTNLPEETSEMMLSMLFNQFPGFKE 200
A PV+ A P +P++ PPN+ILF+ NLP++T++ L LF FP E
Sbjct: 183 AAETGAAPVA--AAPTQRRIVQMPDEYLPPNKILFVQNLPDDTTKEGLEALFRPFPNLVE 240
Query: 201 VRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHA-----------MKISFAKK 246
VR +P R +IAFVEF +E S A+ ALH K + T +K++FAKK
Sbjct: 241 VRTIPGRKNIAFVEFADEQSSGVARDALHNTKFSGTTGAVMAQSEEGLKIKVTFAKK 297
>gi|425868418|gb|AFY04339.1| sans fille, partial [Minettia flaveola]
Length = 112
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 80/141 (56%), Positives = 92/141 (65%), Gaps = 29/141 (20%)
Query: 49 MRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRK 108
MRGQAFV+FKEI+SA+NALR+MQGFPFYDKPMRI YSK+DSD+++KIKGTF ERPKKV+
Sbjct: 1 MRGQAFVVFKEISSASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKIKGTFKERPKKVKP 60
Query: 109 QPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQ 168
AP+ + K KK E A P SQ EQ
Sbjct: 61 PKAPLNVEEKKDKKKKTTNAENAN-----------------PNSQ------------TEQ 91
Query: 169 PPNQILFLTNLPEETSEMMLS 189
PPNQILFLTNLPEET+EMMLS
Sbjct: 92 PPNQILFLTNLPEETNEMMLS 112
>gi|145544152|ref|XP_001457761.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124425579|emb|CAK90364.1| unnamed protein product [Paramecium tetraurelia]
Length = 228
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 132/238 (55%), Gaps = 36/238 (15%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+YVT ++ DLK LY +FSQFG+++ +V KT K+RGQAF++F+ I ATNA +
Sbjct: 22 LYVTGLNDKIKLEDLKFVLYILFSQFGEVLQMVMKKTQKLRGQAFIVFQNITYATNAKSA 81
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRK-QPAPVEDPAEAKKSKKKAAK 128
+ G YDKP+ I+++ S + +I+G F + K+ ++ QP P E
Sbjct: 82 LSGMIVYDKPLIIEFAYKKSVIFDRIEGKFYYKQKQHKELQPTL---PNE---------- 128
Query: 129 EQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMML 188
LM+ ++Q+ +Q ++ + + N +L + +LP +E+ML
Sbjct: 129 ----LMKEKKQKKFEEKIQN-------------SSNLNQGEINNVLLIESLPPFVTEIML 171
Query: 189 SMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
S LF Q+PG+ ++L+P R +AFVE++N+ Q+ A L FKITP +K+ +AKK
Sbjct: 172 SELFRQYPGYSLIKLIPAR-GLAFVEYQNDDQATVALKGLSNFKITPECQLKVKYAKK 228
>gi|344250483|gb|EGW06587.1| U1 small nuclear ribonucleoprotein A [Cricetulus griseus]
Length = 104
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 61/82 (74%), Positives = 70/82 (85%)
Query: 165 VPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAA 224
+ E PPN ILFLTNLPEET+++MLSMLFNQ PGFKEV LVP +HDIAFVEF+NE+Q+ AA
Sbjct: 23 LSENPPNHILFLTNLPEETNKLMLSMLFNQCPGFKEVHLVPGQHDIAFVEFDNEVQAGAA 82
Query: 225 KLALHGFKITPTHAMKISFAKK 246
AL GFKIT +AMKISFAKK
Sbjct: 83 PDALQGFKITQNNAMKISFAKK 104
>gi|68066442|ref|XP_675204.1| small nuclear ribonucleoprotein [Plasmodium berghei strain ANKA]
gi|56494251|emb|CAH97133.1| small nuclear ribonucleoprotein (snRNP), putative [Plasmodium
berghei]
Length = 192
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 113/227 (49%), Gaps = 55/227 (24%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
I+ DLK LY F +G ++D+V K+ K+RGQAFVIF IAS+T A ++++G PF +K
Sbjct: 21 INVNDLKYLLYEFFCPYGNVLDVVIKKSNKLRGQAFVIFSNIASSTLAYKNLKGKPFLNK 80
Query: 79 PMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQ 138
+ I Y+KT S +I K+ GT+ P+ K+ K A + + Q
Sbjct: 81 NININYAKTKSKIIEKLDGTY-----------NPI-------KNYKPANNYENNINQF-- 120
Query: 139 QQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGF 198
L VQ NLP+E ++ L +LFNQ+PGF
Sbjct: 121 ----TLFVQ------------------------------NLPDEINKNALEILFNQYPGF 146
Query: 199 KEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAK 245
EVR +P R ++AF++F + A L FKITP H MKIS++
Sbjct: 147 SEVRYIPGR-NVAFIDFNSYQNGEVAMNGLQSFKITPEHPMKISWSN 192
>gi|213410425|ref|XP_002175982.1| U2 small nuclear ribonucleoprotein B [Schizosaccharomyces japonicus
yFS275]
gi|212004029|gb|EEB09689.1| U2 small nuclear ribonucleoprotein B [Schizosaccharomyces japonicus
yFS275]
Length = 249
Score = 126 bits (317), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 84/225 (37%), Positives = 126/225 (56%), Gaps = 19/225 (8%)
Query: 24 LKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83
LK+ L +F ++G+I+ + A KTL+MRGQAFV+F++ A AL+ +QGFP Y KPM IQ
Sbjct: 40 LKRILEHLFGKYGKILHVYARKTLRMRGQAFVVFEDGRCAAQALQDLQGFPLYGKPMLIQ 99
Query: 84 YSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQA 143
+S + SD++ Q E + K K+ A +E+ R Q + + M
Sbjct: 100 FSNSKSDIVV---------------QRDEGELVLQENKKKRHAERERMR-QQGELRPMPQ 143
Query: 144 LSVQQPPVSQP--APPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEV 201
S + ++ A PM PPN++L L NLP E + +L+ +F + GF EV
Sbjct: 144 RSGHRKATNKKVNAGEKPMPHVVDDLLPPNKLLLLQNLPAEANAEVLTQIFGTYQGFTEV 203
Query: 202 RLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
R+VP R IAFVEFENE +A A+ + G + T ++K+SFA+K
Sbjct: 204 RMVPGRRGIAFVEFENENDAAIARDSTTGMLLGET-SIKVSFARK 247
>gi|425868414|gb|AFY04337.1| sans fille, partial [Drosophila melanogaster]
Length = 116
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 80/145 (55%), Positives = 94/145 (64%), Gaps = 29/145 (20%)
Query: 48 KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVR 107
KMRGQAFVIFKEI SA+NALR+MQGFPFYDKPM+I YSK+DSD+++KIKGTF ERPKKV+
Sbjct: 1 KMRGQAFVIFKEIGSASNALRTMQGFPFYDKPMQIAYSKSDSDIVAKIKGTFKERPKKVK 60
Query: 108 KQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPE 167
+ K KK ++ E + P +Q E
Sbjct: 61 PPKPAPGTDEKKDKKKKPSSAENSN-----------------PNAQT------------E 91
Query: 168 QPPNQILFLTNLPEETSEMMLSMLF 192
QPPNQILFLTNLPEET+EMMLSMLF
Sbjct: 92 QPPNQILFLTNLPEETNEMMLSMLF 116
>gi|401786831|gb|AFQ07875.1| sans fille, partial [Scaptomyza flava]
gi|401786833|gb|AFQ07876.1| sans fille, partial [Scaptomyza nigrita]
Length = 116
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 73/154 (47%), Positives = 89/154 (57%), Gaps = 47/154 (30%)
Query: 56 IFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTF---------MERPKKV 106
IFKEI SA+NALR+MQGFPFYDKPMRI YSK+DSD+++K+KGT+ + V
Sbjct: 1 IFKEIGSASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTYKERPKKVKPPKPAPGV 60
Query: 107 RKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVP 166
++ + P+ A+ S P +Q
Sbjct: 61 EEKKDKKKKPSNAENSN--------------------------PNTQ------------T 82
Query: 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKE 200
EQPPNQILFLTNLPEET+EMMLSMLFNQFPGFKE
Sbjct: 83 EQPPNQILFLTNLPEETNEMMLSMLFNQFPGFKE 116
>gi|425868391|gb|AFY04326.1| sans fille, partial [Asilus crabroniformis]
Length = 115
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 72/145 (49%), Positives = 87/145 (60%), Gaps = 30/145 (20%)
Query: 48 KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVR 107
KMRGQAFV+FKEIASATNALR+MQGFPFYDKPM+I Y KTDSDV++++KGT+ ER
Sbjct: 1 KMRGQAFVVFKEIASATNALRTMQGFPFYDKPMKIAYGKTDSDVVARMKGTYKER----- 55
Query: 108 KQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPE 167
K K A+ + + + ++ + V Q
Sbjct: 56 ----------PKKIKPPKPAQSEEKKEKKKKSTNSDTNNSNSTVEQ-------------- 91
Query: 168 QPPNQILFLTNLPEETSEMMLSMLF 192
PPNQILFLTNLPEET EMMLSMLF
Sbjct: 92 -PPNQILFLTNLPEETXEMMLSMLF 115
>gi|444708342|gb|ELW49419.1| U2 small nuclear ribonucleoprotein B'' [Tupaia chinensis]
gi|444708343|gb|ELW49420.1| U2 small nuclear ribonucleoprotein B'' [Tupaia chinensis]
Length = 130
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 77/149 (51%), Positives = 90/149 (60%), Gaps = 20/149 (13%)
Query: 80 MRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQ 139
M+IQY+KTDSD+ISK+ GTF ++ KK K+ A + A +KK
Sbjct: 1 MQIQYAKTDSDIISKMHGTFADKEKKKEKKKAKTVEQAATTANKKPG------------- 47
Query: 140 QMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFK 199
Q S S P P VP+ PPN ILFL NLPEET+EMMLSMLFNQFPGFK
Sbjct: 48 QGTPNSANTQGNSTPNPQ-------VPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFK 100
Query: 200 EVRLVPNRHDIAFVEFENEMQSAAAKLAL 228
EVRL P RHD AFVEFEN+ Q+ AA AL
Sbjct: 101 EVRLAPGRHDSAFVEFENDGQAGAAGDAL 129
>gi|425868425|gb|AFY04342.1| sans fille, partial [Cochliomyia macellaria]
Length = 113
Score = 126 bits (316), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 79/146 (54%), Positives = 91/146 (62%), Gaps = 37/146 (25%)
Query: 51 GQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRK-- 108
GQAFVIFKEIASA+NALR+MQGFPFYDKPMRI Y+KTDSDV +K+KGTF ERPKK++
Sbjct: 1 GQAFVIFKEIASASNALRTMQGFPFYDKPMRIAYAKTDSDVXAKMKGTFKERPKKLKPPK 60
Query: 109 --QPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVP 166
QP + + K S + A P +Q
Sbjct: 61 PVQPVXDKKDKKKKASNAENAN---------------------PNTQ------------T 87
Query: 167 EQPPNQILFLTNLPEETSEMMLSMLF 192
EQPPNQILFLTNLPEET+EMMLSMLF
Sbjct: 88 EQPPNQILFLTNLPEETNEMMLSMLF 113
>gi|290992905|ref|XP_002679074.1| predicted protein [Naegleria gruberi]
gi|284092689|gb|EFC46330.1| predicted protein [Naegleria gruberi]
Length = 212
Score = 126 bits (316), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 120/224 (53%), Gaps = 50/224 (22%)
Query: 24 LKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83
LKK LY++F QFG+++D++A + K RGQAF++FK++A+AT A + + G+ F+DKPM I
Sbjct: 36 LKKQLYSMFGQFGEVLDVIASRYEKTRGQAFIVFKDVATATAAKKKLNGYVFHDKPMHIN 95
Query: 84 YSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQA 143
++K+ SD +K+ G + E K+K+K +E ++ + ++ +
Sbjct: 96 FAKSKSDATAKLDGNY------------------EEYKAKRKVKQESSKQSRREENLV-- 135
Query: 144 LSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPE--ETSEMMLSMLFNQFPGFKEV 201
P+ +LF+ NLP E S +L LFN + G+K++
Sbjct: 136 --------------------------PSSVLFIENLPRDVEKSSELLETLFNNYDGYKKL 169
Query: 202 RLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAK 245
RLV + +AFVE+E Q+ +A+ L +KI M+ISF K
Sbjct: 170 RLVGEK-GVAFVEYETIEQATSAREGLQSWKI-KQQPMRISFKK 211
>gi|408395814|gb|EKJ74987.1| hypothetical protein FPSE_04807 [Fusarium pseudograminearum CS3096]
Length = 242
Score = 126 bits (316), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 77/231 (33%), Positives = 121/231 (52%), Gaps = 21/231 (9%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
VYV ++ L +L IFS+FG ++DIVA K L+ +GQAF+++ SA A+
Sbjct: 10 VYVQNLEERVKLETLVDALRTIFSEFGNVVDIVAKKNLRAKGQAFIVYDNAESAQEAIEE 69
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
+ GF +DKPM++ +++ SD ++ G+ E R + +A+K K+KA E
Sbjct: 70 INGFDLFDKPMKLALARSRSDKTVELTGSQEELENHKRHR--------QAEKDKRKA--E 119
Query: 130 QARLMQAQQQQMQALSVQQPPV------SQPAPPAPMATAGVPE-QPPNQILFLTNLPEE 182
+A Q Q + + + P + A AT+ + E PPN+ILF+ N PE+
Sbjct: 120 EAAEEQRQSNKRASGATDNRPAKVAKSSGLKSTSAAAATSVLDEFLPPNKILFVQNFPED 179
Query: 183 TSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKI 233
L+ +F +F G +EVRLVP R IAF+E+E E + AK G +
Sbjct: 180 YDVEALTSVFGRFEGLREVRLVPTRRGIAFIEYETEQGAITAKENTAGLNL 230
>gi|425868431|gb|AFY04345.1| sans fille, partial [Musca domestica]
Length = 115
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 78/144 (54%), Positives = 90/144 (62%), Gaps = 29/144 (20%)
Query: 48 KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVR 107
KMRGQAFVIFKEIASA+NALR+MQGFPFYDKPMRI Y+KTDSDV++K+KGTF ERPKKV+
Sbjct: 1 KMRGQAFVIFKEIASASNALRTMQGFPFYDKPMRIAYAKTDSDVVAKMKGTFKERPKKVK 60
Query: 108 KQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPE 167
+ K KK E + P +Q E
Sbjct: 61 PPKPAAPAEDKKDKKKKTTNAENSN-----------------PNAQ------------SE 91
Query: 168 QPPNQILFLTNLPEETSEMMLSML 191
QPPNQILFLTN EET+EMMLS+L
Sbjct: 92 QPPNQILFLTNATEETNEMMLSLL 115
>gi|327354834|gb|EGE83691.1| U2 small nuclear ribonucleoprotein B [Ajellomyces dermatitidis ATCC
18188]
Length = 313
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 85/257 (33%), Positives = 137/257 (53%), Gaps = 34/257 (13%)
Query: 3 IILAHICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIAS 62
I ++H+ V N I LK++L IFS++G I+DIVA LK +GQAF++F + S
Sbjct: 45 IFVSHVQVRNLE--ERIKVEPLKEALAEIFSEYGNIIDIVAKTNLKAKGQAFIVFDNVDS 102
Query: 63 ATNALRSMQGFPFYDKPMRIQYSKTDSD-VISKIKG-TFMERPKKVR------------- 107
AT A+ + GF ++KPM + Y++T SD ++ K G T +E K+ R
Sbjct: 103 ATRAIEEINGFELFEKPMVLDYARTRSDAIVLKEHGETELEAHKRKRLAEKGQFIFSFSF 162
Query: 108 ---KQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPA--------- 155
A + D +++K A+E ++AQ++ + ++ P ++P+
Sbjct: 163 RLVVSKALMADFHFFGATERKQAQEA---LEAQKKLKRGVAAPGGPEARPSKVTRGAGLK 219
Query: 156 PPAPMATAGVPEQ--PPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFV 213
P A + ++ PPN+ILFL +P+ + L+ +F +F GFKEVR+VP R IAFV
Sbjct: 220 PSTATAAPVIQDEYLPPNKILFLREIPDSLDQDGLTEIFGRFEGFKEVRMVPGRKGIAFV 279
Query: 214 EFENEMQSAAAKLALHG 230
E+E E + +AK A G
Sbjct: 280 EYEAETGAISAKEATSG 296
>gi|392574488|gb|EIW67624.1| hypothetical protein TREMEDRAFT_33230 [Tremella mesenterica DSM
1558]
Length = 250
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 126/230 (54%), Gaps = 29/230 (12%)
Query: 24 LKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83
+K++L +F + I+ +VA + ++MRGQAFV F ++ +A A R + FP Y KP++I+
Sbjct: 43 MKETLGVLFKPYRPILPVVAHRNVRMRGQAFVTFHDVETANRARREVGEFPLYGKPIQIK 102
Query: 84 YSKTDSD-VISKIKGT-FMERPKKVR---KQPAPVEDPAEAKKSKKKAAKEQARLMQAQQ 138
++K+ SD + K++G +E KK R K+ + ++P K + K A + ++
Sbjct: 103 FAKSRSDSAVVKLEGEEALEEHKKERLEQKKRSRRDNPLRRKAAAKLRADTEGGPAPVKR 162
Query: 139 QQMQALSVQQPPVSQPAPPAPMATAGVPEQ--PPNQILFLTNLPEETSEMMLSMLFNQFP 196
Q++Q +P++ PPN +LF+ NLPE T L +F P
Sbjct: 163 QKIQ----------------------MPDEYLPPNNVLFVQNLPEGTEADELREVFGTHP 200
Query: 197 GFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
G E+R +P + DIAFVE+ +E + AK ALH FKI MK+++A+K
Sbjct: 201 GLVEIRTIPAKKDIAFVEYTDEACAGLAKTALHNFKIDGETKMKVTYARK 250
>gi|425868433|gb|AFY04346.1| sans fille, partial [Neobellieria bullata]
Length = 109
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/140 (57%), Positives = 90/140 (64%), Gaps = 33/140 (23%)
Query: 48 KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVR 107
KMRGQAFVIFKEIASA+NALR+MQGFPFYDKPMRI YSKTDSDV++K+KGTF ERPKK +
Sbjct: 1 KMRGQAFVIFKEIASASNALRTMQGFPFYDKPMRIAYSKTDSDVVAKMKGTFKERPKKQK 60
Query: 108 KQP--APVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGV 165
APVE+ + KK A E A P +Q
Sbjct: 61 PPKPVAPVEEKKDKKKKASNA--ENAN-----------------PNTQ------------ 89
Query: 166 PEQPPNQILFLTNLPEETSE 185
EQPPNQILFLTNLPEET+E
Sbjct: 90 TEQPPNQILFLTNLPEETNE 109
>gi|449295579|gb|EMC91600.1| hypothetical protein BAUCODRAFT_38709 [Baudoinia compniacensis UAMH
10762]
Length = 239
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/241 (33%), Positives = 136/241 (56%), Gaps = 23/241 (9%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ ++ T L +L +F FG I+DIVA K++K +GQAF+++ + +A +A
Sbjct: 14 IYIKNLDEDVKLTTLVPALRELFEDFGNIIDIVAKKSVKRKGQAFIVYDSVDAAQDAKDE 73
Query: 70 MQGFPFYDKPMRIQYSKTDSD--VISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAA 127
M F + KPM I+++KT SD V+ + +E R E KK +K+
Sbjct: 74 MNSFEIFGKPMHIEFAKTRSDATVLRENGEEALEEHMTAR---------LEVKK-RKQDE 123
Query: 128 KEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQ--PPNQILFLTNLPEETSE 185
+ + A++ + L+ + ++ A PA + VPE+ PPN+IL+L +LPE+ +
Sbjct: 124 EAEKAKAAAKRVATETLAERPAKAAKVAQPAGI----VPEEYLPPNKILYLRDLPEDYGK 179
Query: 186 MMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAK 245
L+ ++++FPGFKEVR VP R IAFVE+++E + AAK A G + A+K++F +
Sbjct: 180 DALTAIYSRFPGFKEVRTVPTRKTIAFVEYDDESGAIAAKDATGGMTLG-EQAIKVTFQR 238
Query: 246 K 246
K
Sbjct: 239 K 239
>gi|342885057|gb|EGU85166.1| hypothetical protein FOXB_04281 [Fusarium oxysporum Fo5176]
Length = 243
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 72/237 (30%), Positives = 120/237 (50%), Gaps = 32/237 (13%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
VYV ++ L +L +F++FG ++DIVA K L+ +GQAFV++ SA +A+
Sbjct: 10 VYVQNLEERVKLDALVDTLRTVFAEFGNVVDIVAKKNLRAKGQAFVVYDNPESAQDAINE 69
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
+ GF + KPM++ +++T SD ++KG ++ E K ++A K+
Sbjct: 70 IDGFELFGKPMKLAFARTQSDKTIELKGN---------------QEELEQHKRHRQAEKD 114
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQ-------------PPNQILFL 176
+ + +++ ++Q Q V+ P ++G+ PPN+ILF+
Sbjct: 115 KRKALESAEEQRQINKRGSGSVNDNRPAKAAKSSGLKSTSAAASGSVLDEFLPPNKILFV 174
Query: 177 TNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKI 233
N PE L+ +F +F GF+EVRLVP R IAFVE+E E + AK G +
Sbjct: 175 QNFPEGYDIETLTSVFGRFDGFREVRLVPGRRGIAFVEYEAEQGAITAKENTAGLHL 231
>gi|6730009|pdb|1DRZ|A Chain A, U1a Spliceosomal ProteinHEPATITIS DELTA VIRUS GENOMIC
Ribozyme Complex
Length = 97
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/87 (66%), Positives = 73/87 (83%), Gaps = 4/87 (4%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LKKSL+AIFS+FGQI+DI+ ++LK RGQAFVIFKE++SATNALRS
Sbjct: 11 IYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKXRGQAFVIFKEVSSATNALRS 70
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIK 96
QGFPFYDKP RIQY+KTDSD+I+K K
Sbjct: 71 XQGFPFYDKPXRIQYAKTDSDIIAKXK 97
>gi|192988518|pdb|3CUL|A Chain A, Aminoacyl-Trna Synthetase Ribozyme
gi|192988519|pdb|3CUL|B Chain B, Aminoacyl-Trna Synthetase Ribozyme
gi|192988525|pdb|3CUN|A Chain A, Aminoacyl-Trna Synthetase Ribozyme
gi|192988526|pdb|3CUN|B Chain B, Aminoacyl-Trna Synthetase Ribozyme
gi|210061026|pdb|3EGZ|A Chain A, Crystal Structure Of An In Vitro Evolved Tetracycline
Aptamer And Artificial Riboswitch
Length = 98
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/87 (66%), Positives = 73/87 (83%), Gaps = 4/87 (4%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LKKSL+AIFS+FGQI+DI+ ++LK RGQAFVIFKE++SATNALRS
Sbjct: 12 IYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKXRGQAFVIFKEVSSATNALRS 71
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIK 96
QGFPFYDKP RIQY+KTDSD+I+K K
Sbjct: 72 XQGFPFYDKPXRIQYAKTDSDIIAKXK 98
>gi|259016063|gb|ACV89313.1| sans fille [Blattella germanica]
Length = 105
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/164 (47%), Positives = 87/164 (53%), Gaps = 59/164 (35%)
Query: 48 KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVR 107
KMRGQAFV FKEI S++ ALRSMQGFPFYD K +R
Sbjct: 1 KMRGQAFVCFKEIQSSSTALRSMQGFPFYD--------------------------KPMR 34
Query: 108 KQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPE 167
Q A V+ AK M+ Q+P + +
Sbjct: 35 IQYAKVDSDIIAK--------------------MKGTYQQRP-------------KKMKD 61
Query: 168 QPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIA 211
QPPNQILFLTNLPEETSEMML+MLFNQFPGFKEVRLVPNRHDIA
Sbjct: 62 QPPNQILFLTNLPEETSEMMLAMLFNQFPGFKEVRLVPNRHDIA 105
>gi|398391875|ref|XP_003849397.1| hypothetical protein MYCGRDRAFT_75568 [Zymoseptoria tritici IPO323]
gi|339469274|gb|EGP84373.1| hypothetical protein MYCGRDRAFT_75568 [Zymoseptoria tritici IPO323]
Length = 233
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 79/226 (34%), Positives = 124/226 (54%), Gaps = 22/226 (9%)
Query: 24 LKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83
LK+ + I G ++DI A K+LK RGQAFV++ + AT A +Q + + +++Q
Sbjct: 26 LKEGIREIVEDLGTVLDIRAGKSLKQRGQAFVVYSRVEEATEAHDILQDIELFGRKIQVQ 85
Query: 84 YSKTDSD-VISKIKGT-FMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQM 141
Y++ SD + K G + KKVR A+K++K+A +E + +A ++
Sbjct: 86 YARARSDATVQKDDGEEALAEHKKVRL----------AEKARKQALEEAKPVKRAAERDS 135
Query: 142 QALSVQQPPVSQPAPPAPMATAGVPEQ-PPNQILFLTNLPEETSEMMLSMLFNQFPGFKE 200
A +PA ATA + PPN+IL L + PE + L+ LF ++PGFKE
Sbjct: 136 IA--------ERPAKANKAATAVADDYLPPNRILLLRDFPEGYGKTELTALFQRYPGFKE 187
Query: 201 VRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
+R+VP R +AF E+E E QSAAA+ AL+G + + K++F KK
Sbjct: 188 IRMVPGRAGLAFAEYEEETQSAAAREALNGMSMGDSK-FKVTFQKK 232
>gi|320591314|gb|EFX03753.1| U1 small nuclear ribonucleoprotein [Grosmannia clavigera kw1407]
Length = 236
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 68/202 (33%), Positives = 114/202 (56%), Gaps = 16/202 (7%)
Query: 24 LKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83
L+++L +F++FG ++DIVA + LK +GQAF+++ + +A A+R QGFP +DKPM +
Sbjct: 28 LREALQTVFAEFGTVIDIVAKQNLKAKGQAFIVYDDPDAAQTAVREAQGFPLFDKPMVLA 87
Query: 84 YSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQA 143
++T SD + G ED EA K ++ A +++ + ++A ++Q +
Sbjct: 88 LARTRSDATVRRSGD---------------EDELEAHKRRRIAERDKKKALEAAEEQKRL 132
Query: 144 LSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRL 203
L + A A PPN+ LF+ NLPE+ +L+ +F ++ GF+EVRL
Sbjct: 133 LQRTAAGGAGGAAAVAPAVVPDEYLPPNKTLFVQNLPEDCDADVLTGIFGRYEGFREVRL 192
Query: 204 VPNRHDIAFVEFENEMQSAAAK 225
VP R +AFVE++ E + AK
Sbjct: 193 VPGRR-LAFVEYDAEPGAITAK 213
>gi|406694958|gb|EKC98273.1| hypothetical protein A1Q2_07287 [Trichosporon asahii var. asahii
CBS 8904]
Length = 865
Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats.
Identities = 82/228 (35%), Positives = 126/228 (55%), Gaps = 20/228 (8%)
Query: 24 LKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRI- 82
+K++L ++F + + IVA + ++MRGQAFV F++ A+A A R + FP Y KP++I
Sbjct: 653 MKETLASLFKPYHPLGPIVAHRNVRMRGQAFVSFRDKATAALAQRDVNEFPLYGKPIQII 712
Query: 83 QYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQ 142
++KT SD + + KQ E+ EA K ++ A K+ R + +
Sbjct: 713 DFAKTRSDAV-------------IEKQDG--EEALEAWKKERLADKKTKRKTNVIRARNI 757
Query: 143 ALSVQQPPVSQPAPP--APMATAGVPEQ--PPNQILFLTNLPEETSEMMLSMLFNQFPGF 198
A S P+ P A +P++ PPN +LF+ NLPE T++ L +F Q+PG
Sbjct: 758 AKHKAGDDTSAPSGPGAAKKPKLQMPDEYLPPNNVLFVQNLPEGTTQDDLREVFEQYPGL 817
Query: 199 KEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
E+R + + DIAFVE+ +E SA AK ALH FKI MK++FA+K
Sbjct: 818 VEIRTIAAKKDIAFVEYADETASAVAKDALHNFKIDGETKMKVTFARK 865
>gi|308800402|ref|XP_003074982.1| U2snrB small nuclear ribonucleoprotein U2B, putative (IC)
[Ostreococcus tauri]
gi|119358847|emb|CAL52253.2| U2snrB small nuclear ribonucleoprotein U2B, putative (IC)
[Ostreococcus tauri]
Length = 221
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 116/225 (51%), Gaps = 25/225 (11%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
IS +L+ +LY++FS FG+I+DIVA +T ++RGQA++++ + A A +Q FPFYDK
Sbjct: 21 ISKQELRMALYSVFSSFGKILDIVAARTYRLRGQAWIVYDTMDEAQRAFEGLQNFPFYDK 80
Query: 79 PMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQ 138
P++I ++ SDVI +R++ + A A+ ++ +E+ R+ ++
Sbjct: 81 PLKIAFANLSSDVI-------------LRREGEQISRVASARVVRRAENQERERM---RR 124
Query: 139 QQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGF 198
M + + A V + + + LP T+ ML++LF QF GF
Sbjct: 125 TMMAGVLLSHE---------EGADCDVSASKERKCILVQGLPAATTTHMLTLLFQQFLGF 175
Query: 199 KEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISF 243
K + I VEF+ Q++AA L GF++ H++ +SF
Sbjct: 176 KSANMSAKEIGIGQVEFDTPAQASAALNGLQGFRLNAAHSIVLSF 220
>gi|237840841|ref|XP_002369718.1| U2 small nuclear ribonucleoprotein, putative [Toxoplasma gondii
ME49]
gi|95007435|emb|CAJ20656.1| Rnp (Rrm rna binding domain) containing protein, putative
[Toxoplasma gondii RH]
gi|211967382|gb|EEB02578.1| U2 small nuclear ribonucleoprotein, putative [Toxoplasma gondii
ME49]
gi|221482936|gb|EEE21267.1| u2 small nuclear ribonucleoprotein, putative [Toxoplasma gondii
GT1]
gi|221503274|gb|EEE28972.1| u2 small nuclear ribonucleoprotein, putative [Toxoplasma gondii
VEG]
Length = 233
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 77/226 (34%), Positives = 110/226 (48%), Gaps = 45/226 (19%)
Query: 23 DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRI 82
DL+ LY FS +G ++++V ++ MRGQAFV+F ++ SAT ALR+ QG F KP+R+
Sbjct: 51 DLQACLYEFFSAYGLVLEVV-VRGTNMRGQAFVVFADLGSATAALRAAQGKDFLGKPLRL 109
Query: 83 QYSKTDSDVISKIKGTFMERPKKVRKQPAPVE--DPAEAKKSKKKAAKEQARLMQAQQQQ 140
QY+KT SD I K+ F K RK AP D +K K K Q
Sbjct: 110 QYAKTKSDAILKLNDQF-----KPRKPNAPRNKVDAGAGSATKAKDGKATGETGQFS--- 161
Query: 141 MQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKE 200
LF+ NLP + ++ L +LF Q+ G E
Sbjct: 162 ---------------------------------LFIENLPPKATKTSLDILFGQYRGHTE 188
Query: 201 VRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
RL+ R +AFV+F + Q+A A + GFK+ P+H +KIS +K
Sbjct: 189 SRLIEGR-GVAFVDFSTQAQAAVAMQGMQGFKVDPSHPIKISMVEK 233
>gi|358366650|dbj|GAA83270.1| small nuclear ribonucleoprotein U)1a,U)2b [Aspergillus kawachii IFO
4308]
Length = 1418
Score = 124 bits (310), Expect = 5e-26, Method: Composition-based stats.
Identities = 87/256 (33%), Positives = 127/256 (49%), Gaps = 56/256 (21%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
I LK++L IFS++G +++IVA LK +GQAFV+F + +AT A+ + GF +DK
Sbjct: 1164 IKVDQLKEALEEIFSEYGTVLEIVAKTNLKAKGQAFVVFDTVEAATRAIDEINGFELFDK 1223
Query: 79 PMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQ-------- 130
PM + Y+KT SD+ +G ED EA K ++ A K
Sbjct: 1224 PMVLDYAKTRSDMTVLREGG---------------EDELEAHKRRRLAEKGMLGFPLLLA 1268
Query: 131 --------ARLMQA-----QQQQMQALSVQQ----PPVSQPAPPAPMATAG--------- 164
LM ++Q +AL Q+ PP + P P TA
Sbjct: 1269 FLIVSFCWKWLMMVVSGVERKQAHEALEAQKKLKRPPGAPTEPGRPAKTAKGAGLKPTSG 1328
Query: 165 -----VPEQ--PPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFEN 217
+P++ PPN+ILFL +LP+ + L+ +F +F GF+EVRLVP R IAFVE+EN
Sbjct: 1329 AAAAVIPDEYLPPNKILFLRDLPDTADQDSLTAVFGRFEGFQEVRLVPGRKGIAFVEYEN 1388
Query: 218 EMQSAAAKLALHGFKI 233
E + +AK A G +
Sbjct: 1389 ESGAISAKEATSGMAM 1404
>gi|6137598|pdb|1CX0|A Chain A, Hepatitis Delta Virus Ribozyme
Length = 95
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 57/85 (67%), Positives = 72/85 (84%), Gaps = 4/85 (4%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LKKSL+AIFS+FGQI+DI+ ++LK RGQAFVIFKE++SATNALRS
Sbjct: 9 IYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKXRGQAFVIFKEVSSATNALRS 68
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISK 94
QGFPFYDKP RIQY+KTDSD+I+K
Sbjct: 69 XQGFPFYDKPXRIQYAKTDSDIIAK 93
>gi|321265410|ref|XP_003197421.1| RNA binding protein [Cryptococcus gattii WM276]
gi|317463901|gb|ADV25634.1| RNA binding protein, putative [Cryptococcus gattii WM276]
Length = 286
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 77/221 (34%), Positives = 119/221 (53%), Gaps = 17/221 (7%)
Query: 24 LKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83
+K++LY +F + + I+A ++MRGQAF+ F +I SA A + + FP Y K ++I+
Sbjct: 75 MKETLYNLFKPYRPLQPIIAHHNIRMRGQAFISFPDIESANEARKDVNEFPLYGKSVQIK 134
Query: 84 YSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQA 143
++K SD I K KG E + R++ E KK K+K L Q Q++++A
Sbjct: 135 FAKGLSDSIVKRKGDEKEFEEHTRRR-------LEEKKLKRK----NNPLRQKAQEKLRA 183
Query: 144 LSVQQPPVSQPAPPAPMATAGVPEQ--PPNQILFLTNLPEETSEMMLSMLFNQFPGFKEV 201
+ P A +P++ PPN +LF+ NLP+ T+ L +F PG E+
Sbjct: 184 DTT----AGTTGPAAKKQRLQMPDEYLPPNSVLFVQNLPDGTTSEDLREVFEVHPGLIEI 239
Query: 202 RLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKIS 242
R +P + DIAFVEF +E + AK ALH FKI MK++
Sbjct: 240 RTIPAKKDIAFVEFADEGAATVAKDALHNFKIDGETKMKVN 280
>gi|85109011|ref|XP_962704.1| hypothetical protein NCU08034 [Neurospora crassa OR74A]
gi|28924315|gb|EAA33468.1| hypothetical protein NCU08034 [Neurospora crassa OR74A]
gi|39979161|emb|CAE85534.1| related to small nuclear ribonucleoprotein snRNP U1A [Neurospora
crassa]
Length = 247
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 84/248 (33%), Positives = 135/248 (54%), Gaps = 27/248 (10%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
VYV ++ LK++L IFS++G ++DIVA LK +GQAFV+F + SA A+
Sbjct: 12 VYVRNLEERVKPEPLKEALRTIFSEYGNVIDIVAKTNLKAKGQAFVVFDKPESAQAAIDE 71
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKA--- 126
+QGF ++KPM + ++T SD G E + R++ A+K KK+A
Sbjct: 72 LQGFELFEKPMVVTLARTRSDATVIQTGNEEEFDQHKRRRI--------AEKDKKRALEV 123
Query: 127 AKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMAT-----AGVPEQ--PPNQILFLTNL 179
A++Q RL ++ +Q + P AT A VP++ PPN+ILF+ NL
Sbjct: 124 AEQQNRL----KRPLQGAAPDARPAKNQRGAGLKATGQGPAAVVPDEYLPPNRILFVQNL 179
Query: 180 PEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKI-TPTHA 238
P++ ++ L+ +F++F GF+EVR VP R IAFVE++ E + AK G +
Sbjct: 180 PDDFTKDDLTTIFSRFDGFREVRTVPGRSGIAFVEYDAEAGAITAKENTAGMALKNGEKI 239
Query: 239 MKISFAKK 246
MK+++ ++
Sbjct: 240 MKVTYQRQ 247
>gi|58262246|ref|XP_568533.1| RNA binding protein [Cryptococcus neoformans var. neoformans JEC21]
gi|134118674|ref|XP_771840.1| hypothetical protein CNBN0220 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50254444|gb|EAL17193.1| hypothetical protein CNBN0220 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57230707|gb|AAW47016.1| RNA binding protein, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 285
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 76/221 (34%), Positives = 117/221 (52%), Gaps = 17/221 (7%)
Query: 24 LKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83
+K++LY +F + + I+A ++MRGQAFV F +I SA A + + FP Y K ++I+
Sbjct: 75 MKETLYNLFKPYRPLQPIIAHHNIRMRGQAFVSFSDIESANEARKDVNEFPLYGKSIQIK 134
Query: 84 YSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQA 143
++K SD I K KG E E+ + + +KK ++ L Q Q +++A
Sbjct: 135 FAKGLSDSIVKRKGDEKE-----------FEEHTKRRLEEKKLKRKNNPLRQKAQAKLRA 183
Query: 144 LSVQQPPVSQPAPPAPMATAGVPEQ--PPNQILFLTNLPEETSEMMLSMLFNQFPGFKEV 201
+ P A +P++ PPN +LF+ NLP+ T+ L +F PG E+
Sbjct: 184 DTT----AGTAGPAAKKQRLQMPDEYLPPNSVLFVQNLPDGTTSEDLREVFEVHPGLIEI 239
Query: 202 RLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKIS 242
R +P + DIAFVEF +E + AK ALH FKI MK+S
Sbjct: 240 RTIPAKKDIAFVEFADEGAATIAKDALHNFKIDGETKMKVS 280
>gi|393241088|gb|EJD48612.1| RNA-binding domain-containing protein [Auricularia delicata
TFB-10046 SS5]
Length = 269
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/269 (29%), Positives = 139/269 (51%), Gaps = 64/269 (23%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
+ +++L+ LYA+FS +G+++D+VA K+ KMRGQAF++F ++A+AT A+R+ G FYDK
Sbjct: 20 VKTSELRSQLYALFSTYGRVIDVVASKSPKMRGQAFLVFADLAAATTAMRACAGMSFYDK 79
Query: 79 PMRIQYSKT---------DSDVIS--------------KIKGTFMERPKKVRKQPAPVED 115
P+RI+YS+T D + +S K+ G +RP+ D
Sbjct: 80 PLRIEYSRTKSYATVRQEDPNFVSPSLAKAKKAPAPATKLNGG-EKRPRD--------SD 130
Query: 116 PAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVP--------E 167
A+A++ K+ + + + ++ + + +QP AT GV +
Sbjct: 131 EADAQREAKRGKADDGDEDEMEIEEDEDVPAKQP-----------ATNGVAAAGAAASMQ 179
Query: 168 QPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRH-------------DIAFVE 214
+PP+ L TNLP+E +E MLS+LF+Q+ GF+ + ++H +A +
Sbjct: 180 RPPSATLLCTNLPQEITEDMLSVLFSQYQGFQSASVTASQHPAIVNGAQISAKTKMAQIF 239
Query: 215 FENEMQSAAAKLALHGFKITPTHAMKISF 243
+++ ++ AK AL GF + M IS+
Sbjct: 240 YDSAELASTAKEALDGFAVKKGWQMLISY 268
>gi|313236302|emb|CBY11622.1| unnamed protein product [Oikopleura dioica]
Length = 161
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/202 (37%), Positives = 111/202 (54%), Gaps = 44/202 (21%)
Query: 45 KTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPK 104
K KMRGQAF+ FK+I+ A NA++ MQGFPFY+K M I YS+ +S VI++ K
Sbjct: 4 KAPKMRGQAFITFKDISDAANAMKRMQGFPFYEKAMNIAYSRRESHVITQAK-------- 55
Query: 105 KVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAG 164
+ PA K ++ AKE + A+++
Sbjct: 56 --KYVPA---------KDERTLAKETNAKVAAKKKTSD---------------------- 82
Query: 165 VPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAA 224
E+ P +++ NLP+E +E ML++LF+QFPGFK+ R VP+ AFVEF + + +A
Sbjct: 83 --EEEPAATIYVENLPDEANESMLNLLFSQFPGFKKSRPVPSGGK-AFVEFADAGAATSA 139
Query: 225 KLALHGFKITPTHAMKISFAKK 246
K AL GFK+TP +K++F+KK
Sbjct: 140 KDALQGFKVTPERPIKLTFSKK 161
>gi|425868405|gb|AFY04333.1| sans fille, partial [Episyrphus balteatus]
Length = 112
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/142 (53%), Positives = 85/142 (59%), Gaps = 30/142 (21%)
Query: 51 GQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQP 110
G A VIFKEI+SA+NALR MQGFPFYDKPMRI YSKTDSDV++KIKGTF ERPKKV+
Sbjct: 1 GXALVIFKEISSASNALRXMQGFPFYDKPMRIAYSKTDSDVVAKIKGTFKERPKKVKPPK 60
Query: 111 APVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPP 170
P + + KK K A+ A + EQPP
Sbjct: 61 XPATEEKKDKKKKTGGAENAA------------------------------SNSTAEQPP 90
Query: 171 NQILFLTNLPEETSEMMLSMLF 192
NQILFLTNLPEET MML MLF
Sbjct: 91 NQILFLTNLPEETXXMMLPMLF 112
>gi|425868420|gb|AFY04340.1| sans fille, partial [Thaumatomyia notata]
Length = 112
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 68/142 (47%), Positives = 87/142 (61%), Gaps = 30/142 (21%)
Query: 51 GQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQP 110
GQAFVIFKEI SA+NALR+MQGFPFYDKPMRI Y+K++SDV++KIKGT+ E
Sbjct: 1 GQAFVIFKEIGSASNALRTMQGFPFYDKPMRIAYAKSESDVVAKIKGTYKE--------- 51
Query: 111 APVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPP 170
K + + +Q ++++ + + P + EQPP
Sbjct: 52 -------------KPKKVKPPKPVQVEEKKDKKKKTTNAENTNPNTQS--------EQPP 90
Query: 171 NQILFLTNLPEETSEMMLSMLF 192
NQILFLTNLPEET+EMMLSMLF
Sbjct: 91 NQILFLTNLPEETNEMMLSMLF 112
>gi|425868401|gb|AFY04331.1| sans fille, partial [Hermetia illucens]
Length = 116
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 73/145 (50%), Positives = 92/145 (63%), Gaps = 29/145 (20%)
Query: 48 KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVR 107
KMRGQAFVIFKEIASA+NALR+MQGFPFYDKPMRI Y+KTDSDV++++KGT+ ERPKK++
Sbjct: 1 KMRGQAFVIFKEIASASNALRTMQGFPFYDKPMRIAYAKTDSDVVARMKGTYKERPKKIK 60
Query: 108 KQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPE 167
++ +++ + +V+QP
Sbjct: 61 PP---------KPAPSEEKKEKKKKAANNADSASANSTVEQP------------------ 93
Query: 168 QPPNQILFLTNLPEETSEMMLSMLF 192
PNQILFLTNLPEET+EMMLSMLF
Sbjct: 94 --PNQILFLTNLPEETNEMMLSMLF 116
>gi|452979111|gb|EME78874.1| hypothetical protein MYCFIDRAFT_144592, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 224
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/209 (38%), Positives = 114/209 (54%), Gaps = 14/209 (6%)
Query: 24 LKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83
L + ++ F +FG I+D+VA K LK +GQAFV+F+ A A+ ++QGF +P+ I
Sbjct: 13 LIQEIHDTFGEFGTIIDVVAKKNLKAKGQAFVVFESPEEAEIAMEALQGFDLLGQPVTIA 72
Query: 84 YSKTDSD-VISKIKGT-FMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQM 141
++KT SD I K G +E KKVR K+ KK A++
Sbjct: 73 FAKTRSDATIKKDDGDEALEEWKKVR---------LAEKERKKAEEAAAEAAKPAKRPAD 123
Query: 142 QALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEV 201
A ++P S P MA +P PN+ L L + P+E + LS LF +FPGFKEV
Sbjct: 124 AANLAERPAKSNTKPSNAMADEYLP---PNKTLILRDFPDEYGKDELSALFARFPGFKEV 180
Query: 202 RLVPNRHDIAFVEFENEMQSAAAKLALHG 230
R+VP R +AFVE+E+E+ AAK A+HG
Sbjct: 181 RVVPGRKGLAFVEYEDELGGTAAKEAMHG 209
>gi|412990465|emb|CCO19783.1| U1 small nuclear ribonucleoprotein A [Bathycoccus prasinos]
Length = 240
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 127/241 (52%), Gaps = 22/241 (9%)
Query: 14 VYVTHISST----DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+++++ T +L+K+L A+FSQFG++ +I A + K+RGQA+++F SA NAL
Sbjct: 10 LYISNLNETVAVNELRKALLAVFSQFGRVSNIFASRRYKLRGQAWIVFGNSQSADNALHV 69
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
+QG PFY KPM I + KI + E P+K +Q + ++S + +
Sbjct: 70 LQGLPFYSKPMNIAVALKFPSASMKINSS--ELPQKSSEQCIHSSGISSMRRSGEDVGID 127
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPN---QILFLTNL--PEETS 184
Q + + +++ L A ++ G+P N ++L T L E T+
Sbjct: 128 QEKKGEDREEHKNKL-----------KSAILSVKGLPGFILNFNFELLGFTFLFITEATT 176
Query: 185 EMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFA 244
+ MLS+LF QFPGF+ VR + +A V+F ++ A L GF++ TH M+I +A
Sbjct: 177 DQMLSLLFKQFPGFQRVRTDSEKPGLASVQFRCAAEATTALSGLQGFRLNATHTMEIEYA 236
Query: 245 K 245
K
Sbjct: 237 K 237
>gi|425868387|gb|AFY04324.1| sans fille, partial [Sylvicola fenestralis]
Length = 107
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 71/135 (52%), Positives = 80/135 (59%), Gaps = 28/135 (20%)
Query: 54 FVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPV 113
FVIFKEIAS+TNALR+MQGFPFYDKPMRI Y K DSDVI+K+KGT+ ERPKK +
Sbjct: 1 FVIFKEIASSTNALRTMQGFPFYDKPMRIAYCKGDSDVIAKLKGTYKERPKKSKPPKPVA 60
Query: 114 EDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQI 173
+E KK KK+ A L EQPPNQI
Sbjct: 61 ---SEDKKEKKRKHNANAELGATNN-------------------------STAEQPPNQI 92
Query: 174 LFLTNLPEETSEMML 188
LFLTNLPEET+EMML
Sbjct: 93 LFLTNLPEETNEMML 107
>gi|392568273|gb|EIW61447.1| RNA-binding domain-containing protein [Trametes versicolor
FP-101664 SS1]
Length = 260
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/241 (31%), Positives = 124/241 (51%), Gaps = 16/241 (6%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
+ +L+ LYA+F+ +G+I+D+VALK KM+GQAF++F ++A AT ALR +G FYDK
Sbjct: 19 VKKEELRAQLYALFTTYGRILDVVALKGPKMKGQAFLVFSDLAGATAALRGCEGTVFYDK 78
Query: 79 PMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVE---DPAEAKKSKKK---AAKEQAR 132
PM I+Y+KT S + + P + + AP + AE ++ + A+E R
Sbjct: 79 PMHIEYAKTKSYATLRREDPNFVPPTSIHVKNAPNARGLNGAEKRQRDDRMDEDARESKR 138
Query: 133 LMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPE--QPPNQILFLTNLPEETSEMMLSM 190
+ A A A +P Q P+ L +LP+E ++ +LS+
Sbjct: 139 EKTDNSDDDGEEMEIEDDDEGAAKQAAPANGQIPAAVQQPSARLMCIHLPQEVTDDVLSV 198
Query: 191 LFNQFPGFKEVRLVPN--------RHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKIS 242
LF Q+ GF V++VP+ + +A+V FE+ + AK AL GF + M +S
Sbjct: 199 LFQQYQGFHSVQVVPSPTPNAAGQKAKMAYVTFESPDLATVAKDALDGFTLKKGWVMSVS 258
Query: 243 F 243
+
Sbjct: 259 Y 259
>gi|428171290|gb|EKX40208.1| hypothetical protein GUITHDRAFT_75811, partial [Guillardia theta
CCMP2712]
Length = 209
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 85/218 (38%), Positives = 120/218 (55%), Gaps = 27/218 (12%)
Query: 7 HICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNA 66
+I N Y +LK L AIF +G+I+DIVA+ +GQAFV+FK+ T +
Sbjct: 12 YIRNINEKYSKKFRLEELKAKLKAIFRPYGEILDIVAMSNFYNKGQAFVVFKD--GHTLS 69
Query: 67 LRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKA 126
L S+ G K M+I+Y+++ SDVI+K++GTF R R +D KSK A
Sbjct: 70 LTSVGG----GKEMKIKYARSKSDVIAKLEGTFEVR----RGDQMDEDDEDGGDKSKGNA 121
Query: 127 AKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEM 186
QA S Q + APPAP+ T + P+ ILFL NLP + +
Sbjct: 122 -----------HGGWQAPSGQN---QKSAPPAPVHTGPLF---PHPILFLENLPLDITSD 164
Query: 187 MLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAA 224
++ +F+ FPGFKEVRLVP+R IAFVE+E+++QS A
Sbjct: 165 DVAAVFSPFPGFKEVRLVPSRPGIAFVEYESDVQSGMA 202
>gi|449549875|gb|EMD40840.1| hypothetical protein CERSUDRAFT_103222 [Ceriporiopsis subvermispora
B]
Length = 258
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/240 (32%), Positives = 131/240 (54%), Gaps = 16/240 (6%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
++ +L+ LYA+F+ +G+I++IVA+KT KMRGQAF++F ++ASAT ALR+ +G FYDK
Sbjct: 19 VNKEELRTQLYALFTTYGKIINIVAMKTEKMRGQAFLVFSDLASATAALRACEGIVFYDK 78
Query: 79 PMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQ--- 135
PM I+Y++T S + + P V Q + A + +K +E R+ +
Sbjct: 79 PMHIEYARTRSYATLQREDPNFVPPTSVHAQHTSGLNGRSANGTAEKRPRED-RMDEDVP 137
Query: 136 -AQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQI---LFLTNLPEETSEMMLSML 191
++++++ A + A+AGV I L TNLP+E ++ +LS+L
Sbjct: 138 GSKREKVDADEEEMEIEDDDEAARQNASAGVVPTTVQHISARLLCTNLPQEVTDDVLSVL 197
Query: 192 FNQFPGFKEVRLVPN--------RHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISF 243
F Q+ GF+ +VP+ R +A FE+ ++AAK AL GF + M +++
Sbjct: 198 FQQYQGFQSTHVVPSPTPNAQGQRVKMAQTFFESPDLASAAKEALDGFTLKKGWVMSVAY 257
>gi|156088273|ref|XP_001611543.1| U2 small nuclear ribonucleoprotein B' [Babesia bovis T2Bo]
gi|154798797|gb|EDO07975.1| U2 small nuclear ribonucleoprotein B', putative [Babesia bovis]
Length = 285
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/248 (32%), Positives = 127/248 (51%), Gaps = 34/248 (13%)
Query: 24 LKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83
LK L +F +FG+I+DIVAL + +GQAF+IF + SATNAL MQGF M+I
Sbjct: 47 LKAELLKMFGRFGKILDIVALTSFWRKGQAFIIFDNVESATNALHEMQGFVMDGHAMQIN 106
Query: 84 YSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARL---------- 133
Y++ SD+I+K +GT+ RP+ +K P K +++ K RL
Sbjct: 107 YAREKSDIIAKGQGTYRPRPEGPKK-------PRAIKDREQEQLKRFERLQHDYLTGAIE 159
Query: 134 -------------MQAQQQQMQALSVQQPPV--SQPAPPAPMATAGVPEQPPNQILFLTN 178
+QA Q QA+++ + P S +TA + PN+ LF+
Sbjct: 160 GMTGPGDPKLIQALQAAQITFQAMALTKGPGVDSHDDSSRYASTASMARGLPNRTLFVEG 219
Query: 179 LPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHA 238
LPE S ++ +F + GF+E R++ R +AF++F+NE + A AL + +
Sbjct: 220 LPEGVSLADVNAVFARSVGFQEARVIAARK-VAFIDFDNEFNAGCAMQALQEHPMGDS-T 277
Query: 239 MKISFAKK 246
++IS+AK+
Sbjct: 278 LRISYAKR 285
>gi|70947892|ref|XP_743519.1| u1 small nuclear ribonucleoprotein a [Plasmodium chabaudi chabaudi]
gi|56523052|emb|CAH75488.1| u1 small nuclear ribonucleoprotein a, putative [Plasmodium chabaudi
chabaudi]
Length = 444
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 82/273 (30%), Positives = 135/273 (49%), Gaps = 47/273 (17%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
I D+KKSL IF+Q+G I DI+ +K+ +GQA++++ I S+T AL ++QGF + K
Sbjct: 174 IKCEDMKKSLKNIFNQYGLIEDIIVMKSFWRKGQAWIVYDTIESSTKALNALQGFVLFGK 233
Query: 79 PMRIQYSKTDSDVISKIKGTFMER------PKKV----RKQPAPVE-------------- 114
M+I YS SDV +K GTF+ER PK++ RKQ E
Sbjct: 234 IMQINYSHNKSDVHTKRNGTFVERSKEPKKPKQIIERERKQKEIFEKMQQNYFEMQMNQI 293
Query: 115 -----DPAEAKKS--------------KKKAAKEQARLMQAQQQQMQALSVQQPPVSQPA 155
D + K+ ++ A E+ + + + L+ P + P
Sbjct: 294 KAMHNDALDKNKNFDLSQMDKEALIARAQQKANEEKKRKKGEDPLQNNLNYNIPNIHHPQ 353
Query: 156 PPAPMATAGVPEQP--PNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFV 213
A A A + P P +ILF+ N+ E + + +F F GF E R++P R+ +AFV
Sbjct: 354 FYAMNAFAQIQANPVIPYRILFVENVDENVNTEAFNDIFKAFSGFVEARIIPQRN-VAFV 412
Query: 214 EFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
++ +E + +A AL +++ + +KIS+AK+
Sbjct: 413 DYTDESSATSAMKALQDYELQGS-KLKISYAKR 444
>gi|395330403|gb|EJF62786.1| RNA-binding domain-containing protein [Dichomitus squalens LYAD-421
SS1]
Length = 270
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/251 (30%), Positives = 127/251 (50%), Gaps = 26/251 (10%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
+ +L+ L+A+F+ +G+I+D+VALK KM+GQAFV+F ++A AT ALR +G FYDK
Sbjct: 19 VKKDELRAQLFALFTTYGRILDVVALKGPKMKGQAFVVFTDLAGATAALRGCEGMVFYDK 78
Query: 79 PMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAP----VEDPAEAKKSKKKAAKEQARLM 134
PM I+Y+KT S + + P + + AP A K+++ E AR +
Sbjct: 79 PMHIEYAKTKSYATLRREDPDFVPPTSIYVKNAPNGKLANGGAGEKRTRDDRMDEDAREV 138
Query: 135 QAQQ----QQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQI----------LFLTNLP 180
+ ++ + + P +T G + QI L NLP
Sbjct: 139 KRERTDKDDEDDDDEEMEIEDDDEGPRQGGSTNGSRQCDAGQIPAATQQQSARLMCLNLP 198
Query: 181 EETSEMMLSMLFNQFPGFKEVRLVPN--------RHDIAFVEFENEMQSAAAKLALHGFK 232
+E ++ +LS+LF Q+ GF V++VP+ R +A+V F++ ++ AK AL GF
Sbjct: 199 QEVTDDVLSVLFQQYQGFHSVQVVPSPTPNAAGQRVKMAYVMFDSPDLASVAKEALDGFT 258
Query: 233 ITPTHAMKISF 243
+ M +S+
Sbjct: 259 LKKGWVMSVSY 269
>gi|425868374|gb|AFY04319.1| sans fille, partial [Arachnocampa flava]
Length = 116
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 72/145 (49%), Positives = 91/145 (62%), Gaps = 29/145 (20%)
Query: 48 KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVR 107
KMRGQAFV FKEIASA+NALR+MQGFPFYDKPMRI Y+KTDSDV++++KGT+ ERPKK++
Sbjct: 1 KMRGQAFVXFKEIASASNALRTMQGFPFYDKPMRIAYAKTDSDVVARMKGTYKERPKKIK 60
Query: 108 KQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPE 167
++ +++ + +V+QP
Sbjct: 61 PP---------KPAPSEEKKEKKKKAANNADSASANSTVEQP------------------ 93
Query: 168 QPPNQILFLTNLPEETSEMMLSMLF 192
PNQILFLTNLPEET+EMMLSMLF
Sbjct: 94 --PNQILFLTNLPEETNEMMLSMLF 116
>gi|259016065|gb|ACV89314.1| sans fille [Muscidifurax raptorellus]
Length = 109
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/63 (87%), Positives = 60/63 (95%)
Query: 48 KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVR 107
KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRI YSKTDSD+I+K+KGTF ERPKK +
Sbjct: 3 KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRINYSKTDSDIIAKMKGTFTERPKKPK 62
Query: 108 KQP 110
+QP
Sbjct: 63 EQP 65
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/47 (97%), Positives = 47/47 (100%)
Query: 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFV 213
EQPPNQILFLTNLP+ETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFV
Sbjct: 63 EQPPNQILFLTNLPDETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFV 109
>gi|341897443|gb|EGT53378.1| CBN-RNP-3 protein [Caenorhabditis brenneri]
Length = 190
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/215 (33%), Positives = 116/215 (53%), Gaps = 47/215 (21%)
Query: 5 LAHICVTNFVYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEI 60
+A I + VYV + I +LK+SL+ IF+QFG+I+ +++ + KMRGQA V+FKE+
Sbjct: 1 MADISPNHTVYVNNLNEKIKKDELKRSLHMIFTQFGEIIQLMSFRKEKMRGQAHVVFKEV 60
Query: 61 ASATNALRSMQ-----------GFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKK---- 105
+SA+NALR++Q G P Y KP QY++ DSDVI++ KGTF+E+ +K
Sbjct: 61 SSASNALRALQLSPPNLKFSISGLPVYGKPDANQYAREDSDVIARAKGTFVEKRQKSVGG 120
Query: 106 VRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGV 165
KQ P E PA++ + +K +E+++ ++ P A
Sbjct: 121 ANKQKKPYERPAKSSTAGEKNDQEKSKEEDSE--------------------GPGA---- 156
Query: 166 PEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKE 200
PN ILF +N+P+ T + +F+Q F+E
Sbjct: 157 ----PNNILFCSNIPDGTDPEQIQTIFSQCVIFRE 187
>gi|259016052|gb|ACV89308.1| sans fille [Musca domestica]
Length = 85
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/63 (84%), Positives = 61/63 (96%)
Query: 48 KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVR 107
KMRGQAFVIFKEIASA+NALR+MQGFPFYDKPMRI Y+KTDSDV++K+KGTF ERPKKV+
Sbjct: 1 KMRGQAFVIFKEIASASNALRTMQGFPFYDKPMRIAYAKTDSDVVAKMKGTFKERPKKVK 60
Query: 108 KQP 110
+QP
Sbjct: 61 EQP 63
>gi|401396957|ref|XP_003879947.1| hypothetical protein NCLIV_003960 [Neospora caninum Liverpool]
gi|325114355|emb|CBZ49912.1| hypothetical protein NCLIV_003960 [Neospora caninum Liverpool]
Length = 234
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 110/225 (48%), Gaps = 42/225 (18%)
Query: 23 DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRI 82
DL+ LY FS +G ++++V ++ MRGQAFV+F +++SAT ALR+ QG F KP+R+
Sbjct: 51 DLQACLYEFFSAYGLVLEVV-VRGTNMRGQAFVVFADLSSATAALRAAQGKDFLGKPLRV 109
Query: 83 QYSKTDSDVISKIKGTFMER-PKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQM 141
QY+KT SD + K+ + R P R + A K KA E +
Sbjct: 110 QYAKTKSDAVLKLNDQYKPRKPNVPRTKVDAGAGAAATKAKDGKATGETGQFS------- 162
Query: 142 QALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEV 201
LF+ NLP + ++ L +LF Q+ G E
Sbjct: 163 --------------------------------LFIENLPPKATKTSLDILFGQYRGHTES 190
Query: 202 RLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
RL+ R +AFV+F + Q+A A + GFK+ P+H +KIS +K
Sbjct: 191 RLIEGR-GVAFVDFSTQAQAAVAMQGMQGFKVDPSHPIKISMVEK 234
>gi|124507237|ref|XP_001352215.1| small nuclear ribonucleoprotein (snRNP), putative [Plasmodium
falciparum 3D7]
gi|23505245|emb|CAD52025.1| small nuclear ribonucleoprotein (snRNP), putative [Plasmodium
falciparum 3D7]
Length = 193
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 76/226 (33%), Positives = 110/226 (48%), Gaps = 54/226 (23%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
I+ DLK LY F +G I+DI K+ K RGQAF++F IAS+T A ++++G F K
Sbjct: 21 INVNDLKFLLYEFFCPYGNIIDINIKKSNKGRGQAFIVFNNIASSTLAYKNLKGKMFLKK 80
Query: 79 PMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQ 138
+ I Y+KT S +I KI+GT+ +P KSK ++ +
Sbjct: 81 NININYAKTKSTIIQKIEGTY---------------NPLLNYKSKHN--------IEHKS 117
Query: 139 QQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGF 198
+ L VQ NLP+E ++ L +LFNQ+PGF
Sbjct: 118 NLIYTLLVQ------------------------------NLPDEINKNALEILFNQYPGF 147
Query: 199 KEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFA 244
EVR +P + +IAFV+F + + + L FKITP H MKIS+
Sbjct: 148 YEVRYIPGK-NIAFVDFTAQEHAEISMTGLQNFKITPHHPMKISWV 192
>gi|340501297|gb|EGR28098.1| spliceosomal protein, putative [Ichthyophthirius multifiliis]
Length = 183
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 112/199 (56%), Gaps = 26/199 (13%)
Query: 34 QFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVIS 93
QFG+I++IV K +RGQA+++FK+I +ATNA + + GF FY K ++I +SK+ S+++
Sbjct: 2 QFGEILEIVIKKKNTLRGQAWIVFKDITAATNAKKMLHGFLFYGKDLKINFSKSRSEILD 61
Query: 94 KIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQ 153
K++G ++ PKK K+ + ++ E QAQ+ + + QQ Q
Sbjct: 62 KLEGKWV--PKKKLKRNSILDQKIEN---------------QAQKHE----NQQQQQQQQ 100
Query: 154 PAPPAPMATAGVPE-QPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAF 212
V E PN +L + LP S +L LF+Q+PGFKEVRL+ R + F
Sbjct: 101 QQQLQQQIQQAVTELNEPNNVLMVEYLPSFISSEILMSLFSQYPGFKEVRLISARR-VGF 159
Query: 213 VEFENEMQSAAAKLALHGF 231
+EFENE Q A +ALHGF
Sbjct: 160 IEFENEDQ---ATVALHGF 175
>gi|68074359|ref|XP_679094.1| u1 small nuclear ribonucleoprotein a [Plasmodium berghei strain
ANKA]
gi|56499751|emb|CAH97936.1| u1 small nuclear ribonucleoprotein a, putative [Plasmodium berghei]
Length = 371
Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 83/274 (30%), Positives = 133/274 (48%), Gaps = 49/274 (17%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
I D+KKSL IF+Q+G I DI+ +K+ +GQA++++ I S+T AL S+QGF + K
Sbjct: 101 IKCEDMKKSLKNIFNQYGLIEDIIVMKSFWRKGQAWIVYDTIESSTKALNSLQGFVLFGK 160
Query: 79 PMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVE------------------------ 114
M+I YS SDV +K GTF+ER K +K +E
Sbjct: 161 IMQINYSHNKSDVHTKRNGTFIERSKDPKKPKQIIEREKKQKEIFEKMQQNYFEMQINHI 220
Query: 115 -----DPAEAKKS---------------KKKAAKEQARLMQAQQQQMQALSVQQPPVSQP 154
D E K+ ++KA +E+ R Q A + P + P
Sbjct: 221 KAMHNDELEKNKNFDLSQMDKETLIARAQQKAIEEKKRKKGEDPLQNNA-NYNIPSIHPP 279
Query: 155 APPAPMATAGVPEQP--PNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAF 212
A + A + P P +ILF+ N+ E + + +F F GF E R++P R ++AF
Sbjct: 280 HFYAMNSYAPIQNNPVIPYKILFVENVDENVNTEAFNDIFKAFSGFVEARIIPQR-NVAF 338
Query: 213 VEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
V++ +E + +A AL +++ + +KIS+AK+
Sbjct: 339 VDYTDESSATSAMKALQNYELQGS-KLKISYAKR 371
>gi|453081177|gb|EMF09226.1| small nuclear ribonucleo protein U [Mycosphaerella populorum
SO2202]
Length = 236
Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 128/228 (56%), Gaps = 23/228 (10%)
Query: 24 LKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83
L K+L IF + ++D++A K++K RGQAFV+F+ +A A+ ++QG +P+ +
Sbjct: 24 LIKALRDIFGEVNPVVDVIAKKSIKRRGQAFVVFESADAAQEAMDTLQGLDVLGRPLELA 83
Query: 84 YSKTDSD-VISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQ 142
++KT SD + K +G E+ EA K ++ A KE+ + ++AQ+ +
Sbjct: 84 FAKTRSDATVVKEEG----------------EEALEAHKKQRLAEKERKQALEAQEAAAK 127
Query: 143 ALSVQQPPVSQPAPPA----PMATAGVPE-QPPNQILFLTNLPEETSEMMLSMLFNQFPG 197
+ P S PA P A A E PP++IL L +LP + ++ ++ +F +FPG
Sbjct: 128 SAKRAAEPSSLAERPAKSSKPTAGAMADEYNPPHKILILRDLPSDYTKEAVTAVFQRFPG 187
Query: 198 FKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAK 245
KEVR+VP R +AF E+ +E+++A A+ A+HG + ++++F +
Sbjct: 188 LKEVRMVPGRSGLAFAEYNDEIEAAVAREAMHGVTLG-DKTVRVTFQR 234
>gi|71004576|ref|XP_756954.1| hypothetical protein UM00807.1 [Ustilago maydis 521]
gi|46095668|gb|EAK80901.1| hypothetical protein UM00807.1 [Ustilago maydis 521]
Length = 314
Score = 116 bits (291), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 124/227 (54%), Gaps = 17/227 (7%)
Query: 24 LKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83
+K +L +FS + ++ + A L+MRGQAFV ++ +A A R FP Y K M+I
Sbjct: 67 MKATLTNLFSNYATVLSVTAHTNLRMRGQAFVSLDDVHAADKARREAHLFPLYGKAMKIS 126
Query: 84 YSKTDSD--VISKIK---GTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQ 138
++K+ SD V+ K+K G E K+ ++Q + KKKA ++ + +
Sbjct: 127 FAKSKSDAVVLQKLKDEGGHESEMFKQHKEQRL---------QHKKKARRDNVLRRKELE 177
Query: 139 QQMQALSVQQPPVSQPAPPAPMATAG-VPEQ--PPNQILFLTNLPEETSEMMLSMLFNQF 195
++++A +SQP AP T +P++ PPN++LFL N+PE + L LF+ +
Sbjct: 178 KKIRAKKAATGEISQPEKAAPKRTQQQMPDEYLPPNKMLFLQNIPEGVGKGELESLFSAY 237
Query: 196 PGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKIS 242
PG+ +V+ +P + +IAFVEF + SA A+ AL+G+ +K S
Sbjct: 238 PGYVDVQTIPGKAEIAFVEFADIPSSATARGALNGYNFGAGDKLKAS 284
>gi|323508363|emb|CBQ68234.1| related to small nuclear ribonucleoprotein snRNP U1A [Sporisorium
reilianum SRZ2]
Length = 291
Score = 116 bits (290), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 122/229 (53%), Gaps = 14/229 (6%)
Query: 24 LKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83
+K +L +FS +G ++ + + L+MRGQAFV + +A A R FP Y K M+I
Sbjct: 69 MKATLANLFSNYGTVLSVTSHTNLRMRGQAFVALDNVQAADKARREAHLFPLYGKAMKIS 128
Query: 84 YSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQ-QQQMQ 142
++K+ SD + E ++ ++ + E + KK A+ L + + +++++
Sbjct: 129 FAKSKSDAV-----VLQEHKQQGGEESDEFKQHKEQRLEHKKMARRGNVLRRRELEKKIR 183
Query: 143 ALSVQQPPVSQPAPPAPMATAGVPEQ------PPNQILFLTNLPEETSEMMLSMLFNQFP 196
A +++P A AT P++ PPN++LFL N+PE + L LF+ +
Sbjct: 184 AKRAAAGEIAEPEKAA--ATKRAPQEMPDEYLPPNKMLFLQNIPEGVGKGELESLFSAYS 241
Query: 197 GFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAK 245
G+ +V+ +P + DIAFVEF + SA A+ AL+G+ +KI+FA+
Sbjct: 242 GYVDVQTIPGKADIAFVEFSDIPSSATARGALNGYNFGAGDKLKITFAR 290
>gi|409050372|gb|EKM59849.1| hypothetical protein PHACADRAFT_181793 [Phanerochaete carnosa
HHB-10118-sp]
Length = 258
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 121/239 (50%), Gaps = 14/239 (5%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
++ +LK L+A+F+ +G+++D+VALKT KMRGQAFV+F ++A AT ALR+ +G FYDK
Sbjct: 19 VNKEELKHQLHALFTTYGRVIDVVALKTQKMRGQAFVVFGDLAGATAALRACEGLDFYDK 78
Query: 79 PMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDP----AEAKKSKKKAAKEQARLM 134
PM I+Y+K S K P + + + K+ + E R
Sbjct: 79 PMHIEYAKQKSYATMKKDDPNFVPPASIHARETATRLGNGILSGEKRGRDDKMDEDVRES 138
Query: 135 QAQQQQMQALSVQQPPVSQPAPPAPMATAGVPE--QPPNQILFLTNLPEETSEMMLSMLF 192
+ ++ + + ++ VP Q P+ L TNLP E ++ +LS+LF
Sbjct: 139 KRERVDEDDGEEMEIEDDEETGTKDKTSSAVPPVLQQPSAKLLCTNLPIEVTDDVLSVLF 198
Query: 193 NQFPGFKEVRLVPN--------RHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISF 243
Q+ GF +VP+ + +A V F++ ++ AK AL+GF + M ++F
Sbjct: 199 QQYQGFMSTNVVPSPTPNASGQKCKMAQVLFDSPGMASVAKEALNGFALKQGWVMSVNF 257
>gi|425868403|gb|AFY04332.1| sans fille, partial [Acrosathe novella]
Length = 114
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/145 (49%), Positives = 90/145 (62%), Gaps = 31/145 (21%)
Query: 48 KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVR 107
KMRGQAFVIFKEI+SA+NALR+MQGFPFYDKPMRI Y+K+DSD+I+++KGT+ ERPKK
Sbjct: 1 KMRGQAFVIFKEISSASNALRTMQGFPFYDKPMRIAYAKSDSDMIARMKGTYKERPKK-- 58
Query: 108 KQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPE 167
+ K K++ + + + +QPP
Sbjct: 59 ---------IKPPKPAPSEEKKEKKKKSSADSANSNSTAEQPP----------------- 92
Query: 168 QPPNQILFLTNLPEETSEMMLSMLF 192
NQILFLTNLPEET+EMMLSMLF
Sbjct: 93 ---NQILFLTNLPEETNEMMLSMLF 114
>gi|259016055|gb|ACV89309.1| sans fille [Platystoechotes sp. BMW-2009]
Length = 88
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 50/63 (79%), Positives = 60/63 (95%)
Query: 48 KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVR 107
KMRGQAFVIFKEI+SATN +R+MQGFPFYDKPMRIQY+K DSD+I+K+KGTF ERPK+V+
Sbjct: 3 KMRGQAFVIFKEISSATNGIRAMQGFPFYDKPMRIQYAKKDSDIIAKLKGTFQERPKRVK 62
Query: 108 KQP 110
+QP
Sbjct: 63 EQP 65
>gi|242002414|ref|XP_002435850.1| U1 small nuclear ribonucleoprotein A, putative [Ixodes
scapularis]
gi|215499186|gb|EEC08680.1| U1 small nuclear ribonucleoprotein A, putative [Ixodes
scapularis]
Length = 96
Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 53/71 (74%), Positives = 63/71 (88%), Gaps = 4/71 (5%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ +++ +LKKSLYAIFSQFGQI+DIVALKTLKMRGQAFV+FK++ SATNALRS
Sbjct: 10 IYINNLNEKVKKDELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVVFKDLNSATNALRS 69
Query: 70 MQGFPFYDKPM 80
MQGFPFYDKPM
Sbjct: 70 MQGFPFYDKPM 80
>gi|259016059|gb|ACV89311.1| sans fille [Nannochorista sp. BMW-2009]
Length = 61
Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 52/58 (89%), Positives = 56/58 (96%)
Query: 48 KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKK 105
KMRGQAFVIFKEI+SATNALRSMQGFPFYDKPMRIQY KTDSD+I+K+KGTF ERPKK
Sbjct: 2 KMRGQAFVIFKEISSATNALRSMQGFPFYDKPMRIQYCKTDSDIIAKMKGTFSERPKK 59
>gi|389583186|dbj|GAB65922.1| U2 small nuclear ribonucleoprotein B'' [Plasmodium cynomolgi strain
B]
Length = 262
Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 69/226 (30%), Positives = 107/226 (47%), Gaps = 54/226 (23%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
I+ DL+ L+ F +G ++D+V K + RGQAFV+F IAS+T A ++++G F +K
Sbjct: 90 INVKDLRDLLFEFFCPYGNVLDVVIKKANQSRGQAFVVFNTIASSTLAYKNLKGKLFLNK 149
Query: 79 PMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQ 138
+ I Y+KT S ++ K++GT+ P KS+ A +
Sbjct: 150 QININYAKTKSRIVEKLEGTY---------------KPITNYKSETGYGSSTANVFT--- 191
Query: 139 QQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGF 198
LF+ NLP E ++ L +LFNQ+PGF
Sbjct: 192 -----------------------------------LFIQNLPNEINKNALEILFNQYPGF 216
Query: 199 KEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFA 244
EVR +P R ++AFV+F + A L FK+TP H +KIS++
Sbjct: 217 CEVRHIPGR-NVAFVDFSSYQNGEVAMNGLQSFKVTPQHPIKISWS 261
>gi|399215899|emb|CCF72587.1| unnamed protein product [Babesia microti strain RI]
Length = 291
Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 91/270 (33%), Positives = 139/270 (51%), Gaps = 49/270 (18%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ +I+ + LK L IF+QFG I IVA+ + RGQA+++F I SAT AL +
Sbjct: 34 IYIKNINDRVKLSVLKAYLEQIFNQFGTIRQIVAMGSFWRRGQAWIVFDSIDSATKALNA 93
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKK-------- 121
MQG + M+I ++ SD+++K +GTF+ERP +K P V++ EAK+
Sbjct: 94 MQGHIYQGHAMQINFALAKSDIVAKEQGTFVERPPGPKK-PRAVKE-REAKQFELFQQMQ 151
Query: 122 ---------SKKKAAKEQA---RLMQAQQQ-------------QMQALSVQQPPVSQPAP 156
S+ +A Q L+ A Q +M +S QP Q
Sbjct: 152 KSFMESNLNSETSSATYQGIDNGLLMASAQARATETAINMSKLEMGDMSQYQPRTIQFQQ 211
Query: 157 PAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFE 216
P GVP ++ILF+ NLP + + ++S LF Q PGF E R++ +R +AFV+F+
Sbjct: 212 HGP----GVP----HRILFVENLPPDVNPAIVSTLFGQRPGFIESRVIASRC-VAFVDFD 262
Query: 217 NEMQSAAAKLALHGFKITPTHAMKISFAKK 246
+E + A AL G I + + IS+AKK
Sbjct: 263 SEQSAGLALKALQGHSILGNN-IYISYAKK 291
>gi|298707794|emb|CBJ30225.1| RNA binding / nucleic acid binding [Ectocarpus siliculosus]
Length = 252
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 54/107 (50%), Positives = 83/107 (77%), Gaps = 6/107 (5%)
Query: 9 CVTNFVYVTHISSTD----LKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASAT 64
+ + +YV++++ LKKSL+++FSQFG+I+DIVA + LK++GQA+V+F E + AT
Sbjct: 6 VINHTIYVSNLNEKIKKPLLKKSLHSVFSQFGKIVDIVACRGLKLKGQAWVVFAEKSMAT 65
Query: 65 NALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPA 111
NALR MQGFPF++K MRIQ++K++SDV++K GT++ R K RK P+
Sbjct: 66 NALRQMQGFPFFEKKMRIQFAKSESDVVTKKAGTYVPRDK--RKLPS 110
>gi|451856476|gb|EMD69767.1| hypothetical protein COCSADRAFT_155918 [Cochliobolus sativus
ND90Pr]
Length = 244
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 82/245 (33%), Positives = 122/245 (49%), Gaps = 34/245 (13%)
Query: 8 ICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNAL 67
I V N I + +K++L +F +G I+D++A +LK +GQAF++F +A A+
Sbjct: 27 IYVNNLEERVKIDT--MKQALTRVFQYYGPILDVIAKSSLKRKGQAFIVFDSEKAALEAV 84
Query: 68 RSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAA 127
M GF Y K MR+ +KT SD K RK P ED K K+
Sbjct: 85 EEMNGFEMYGKVMRVHRAKTHSDETVK------------RKAPDMFED----HKRKRLTL 128
Query: 128 KEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQ--PPNQILFLTNLPEETSE 185
K+ R + + Q ++ ++P A A VP++ PN+ LFL N+P + E
Sbjct: 129 KDFKRAEEDAKAQANPVAAEKPRA------AKTGAAAVPDEYVRPNKTLFLQNIPRDVDE 182
Query: 186 MMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHA----MKI 241
L+ +F +F GFKEVRLV R +AF EFENE + AK A TP A MK+
Sbjct: 183 DDLTTIFERFEGFKEVRLVSVRA-VAFAEFENEQFAITAKEATAN---TPIGAEGKPMKV 238
Query: 242 SFAKK 246
++ ++
Sbjct: 239 TYQRQ 243
>gi|452003034|gb|EMD95491.1| hypothetical protein COCHEDRAFT_1200551 [Cochliobolus
heterostrophus C5]
Length = 244
Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 82/245 (33%), Positives = 122/245 (49%), Gaps = 34/245 (13%)
Query: 8 ICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNAL 67
I V N I + +K++L +F +G I+D++A +LK +GQAF++F +A A+
Sbjct: 27 IYVNNLEERVKIDT--MKQALIRVFQYYGPILDVIAKSSLKRKGQAFIVFDSEKAALEAV 84
Query: 68 RSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAA 127
M GF Y K MR+ +KT SD K RK P ED K K+
Sbjct: 85 EDMNGFEMYGKVMRVHRAKTHSDETVK------------RKAPDMFED----HKRKRLTL 128
Query: 128 KEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQ--PPNQILFLTNLPEETSE 185
K+ R + + Q ++ ++P A A VP++ PN+ LFL N+P + E
Sbjct: 129 KDFKRAEEDAKAQANPVAAEKPRA------AKTGAAAVPDEYVRPNKTLFLQNIPRDVDE 182
Query: 186 MMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHA----MKI 241
L+ +F +F GFKEVRLV R +AF EFENE + AK A TP A MK+
Sbjct: 183 DDLTSIFERFEGFKEVRLVSVRA-VAFAEFENEQFAITAKEATAN---TPIGAEGKPMKV 238
Query: 242 SFAKK 246
++ ++
Sbjct: 239 TYQRQ 243
>gi|443921864|gb|ELU41399.1| NLI interacting factor-like phosphatase [Rhizoctonia solani AG-1
IA]
Length = 894
Score = 113 bits (283), Expect = 6e-23, Method: Composition-based stats.
Identities = 85/226 (37%), Positives = 122/226 (53%), Gaps = 34/226 (15%)
Query: 22 TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMR 81
+ LK LYA+F+ +G+I+D+VA+K KMRGQAFV+F+++A AT A+R+ G FYDK M+
Sbjct: 61 SKLKSQLYALFTPYGRIVDVVAIKNPKMRGQAFVVFQDLAGATAAMRAWDGELFYDKEMK 120
Query: 82 IQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDP-AEAKKSKKKAAKEQARL-MQAQQQ 139
I+Y+KT R R+ P DP AEA K KA +RL +A+Q
Sbjct: 121 IEYAKT--------------RSHATRRIEEPGWDPLAEA---KAKALGLGSRLKKEARQG 163
Query: 140 QMQALSVQQPPVSQPAPPAPMATAGVPEQPP----NQILFLTNLPEETSEMMLSMLFNQF 195
+A+ + Q + P P + VP + L TN+P ETS+ L LF Q+
Sbjct: 164 DGEAMDMDD---DQSSNPNPQQNSSVPSTYSAVTISSRLLCTNIPAETSQDTLQKLF-QY 219
Query: 196 PGFKEVRLV-PNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMK 240
PGF+ + L P + A V+FE Q+ A+ LHG HA+K
Sbjct: 220 PGFQSLVLTPPGQAKSAQVQFEQPDQAKVAREGLHG------HALK 259
>gi|388855173|emb|CCF51304.1| related to small nuclear ribonucleoprotein snRNP U1A [Ustilago
hordei]
Length = 297
Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 125/229 (54%), Gaps = 14/229 (6%)
Query: 24 LKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83
+K +L+ +FS +G ++ +V+ L+MRGQAFV + +A A R FP Y K M+I
Sbjct: 75 MKATLHNLFSNYGTVLSVVSHTNLRMRGQAFVSLDNVQAADKARREAHLFPLYGKAMKIS 134
Query: 84 YSKTDSD--VISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQ-QQQ 140
++K+ SD V+ K+K ++ K+ + E + KK A+ L + + +++
Sbjct: 135 FAKSKSDAVVLQKVK-------EEGGKESELFKTHKEERLEHKKMARRGNVLRRRELEKK 187
Query: 141 MQALSVQQPPVSQPAPPAPMATA--GVPEQ--PPNQILFLTNLPEETSEMMLSMLFNQFP 196
++A +++P A A +P++ PPN+ LFL N+P+ + L LF+ +
Sbjct: 188 IRAKRAAAGEIAEPEKAAANKRAQQEMPDEYLPPNKTLFLQNIPDGVGKGELESLFSAYS 247
Query: 197 GFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAK 245
G+ +V+ +P + DIAFVE+ + S A+ AL+G+ +KI+FA+
Sbjct: 248 GYVDVQTIPGKADIAFVEYADIPSSVTARGALNGYNFGAGDKLKITFAR 296
>gi|336265862|ref|XP_003347701.1| hypothetical protein SMAC_03799 [Sordaria macrospora k-hell]
Length = 232
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 80/241 (33%), Positives = 128/241 (53%), Gaps = 28/241 (11%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
VYV ++ LK++L IFS++G ++DIVA LK +GQAFV+F + SA A+
Sbjct: 12 VYVRNLEERVKPEPLKEALRTIFSEYGNVIDIVAKTNLKAKGQAFVVFDKPESAQAAIEE 71
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKA--- 126
+QGF ++KPM + +KT SD G E + R++ A+K KK+A
Sbjct: 72 LQGFELFEKPMLVALAKTRSDATVIQTGNEEEFDQHKRRRI--------AEKDKKRALEV 123
Query: 127 AKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEM 186
A++Q RL ++ +Q + P ++PA A Q P + NLP++ +
Sbjct: 124 AEQQNRL----KRPLQGAA----PDARPAKNQRGAGLKATGQGPAAV----NLPDDFGKD 171
Query: 187 MLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKI-TPTHAMKISFAK 245
L+ +F++F GF+EVR VP R IAFVE++ E + AAK G + MK+++ +
Sbjct: 172 DLTAIFSRFEGFREVRTVPGRSGIAFVEYDAEAGAIAAKENTAGMALKNGEKVMKVTYQR 231
Query: 246 K 246
+
Sbjct: 232 Q 232
>gi|189205961|ref|XP_001939315.1| U2 small nuclear ribonucleoprotein B [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187975408|gb|EDU42034.1| U2 small nuclear ribonucleoprotein B [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 244
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 112/222 (50%), Gaps = 27/222 (12%)
Query: 8 ICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNAL 67
I V N I + +K++L +F +G I+D++A +LK +GQAF++F +A A+
Sbjct: 27 IYVNNLEERVKIDT--MKQALTRVFQYYGPILDVIAKSSLKRKGQAFIVFDSEKAALEAV 84
Query: 68 RSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAA 127
M GF Y K M++ +KT SD K RK P ED K K+
Sbjct: 85 EEMNGFEMYGKVMKVHRAKTHSDETVK------------RKAPDMFED----HKRKRLTL 128
Query: 128 KEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQ--PPNQILFLTNLPEETSE 185
K+ R + + Q ++ ++P A A +P++ PN+ LFL N+P + E
Sbjct: 129 KDFKRAEEDAKAQANPIAAEKPRA------AKTGAAAIPDEYVRPNKTLFLQNIPRDVDE 182
Query: 186 MMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLA 227
L+ +F +F GFKEVRLV R +AF EFENE + AK A
Sbjct: 183 DTLTAIFERFEGFKEVRLVSVRA-VAFAEFENEQFAITAKEA 223
>gi|330933232|ref|XP_003304096.1| hypothetical protein PTT_16533 [Pyrenophora teres f. teres 0-1]
gi|311319509|gb|EFQ87793.1| hypothetical protein PTT_16533 [Pyrenophora teres f. teres 0-1]
Length = 244
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 112/222 (50%), Gaps = 27/222 (12%)
Query: 8 ICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNAL 67
I V N I + +K++L +F +G I+D++A +LK +GQAF++F +A A+
Sbjct: 27 IYVNNLEERVKIDT--MKQALTRVFQYYGPILDVIAKSSLKRKGQAFIVFDSEKAALEAV 84
Query: 68 RSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAA 127
M GF Y K M++ +KT SD K RK P ED K K+
Sbjct: 85 EEMNGFEMYGKVMKVHRAKTHSDETVK------------RKAPDMFED----HKRKRLTL 128
Query: 128 KEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQ--PPNQILFLTNLPEETSE 185
K+ R + + Q ++ ++P A A +P++ PN+ LFL N+P + E
Sbjct: 129 KDFKRAEEDAKAQANPVAAEKPRA------AKTGAAAIPDEYVRPNKTLFLQNIPRDVDE 182
Query: 186 MMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLA 227
L+ +F +F GFKEVRLV R +AF EFENE + AK A
Sbjct: 183 DTLTTIFERFEGFKEVRLVSVRA-VAFAEFENEQFAITAKEA 223
>gi|169611634|ref|XP_001799235.1| hypothetical protein SNOG_08932 [Phaeosphaeria nodorum SN15]
gi|160702333|gb|EAT84100.2| hypothetical protein SNOG_08932 [Phaeosphaeria nodorum SN15]
Length = 204
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 80/234 (34%), Positives = 119/234 (50%), Gaps = 41/234 (17%)
Query: 24 LKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83
+K++L +F +G I+DI+A +LK +GQAFV+F SA A+ M GF Y K +++
Sbjct: 1 MKEALTKVFQYYGPILDIIAKSSLKRKGQAFVVFDSEKSALEAIEEMSGFELYGKALKVS 60
Query: 84 YSKTDSDVISKIKGT--FMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQA--QQQ 139
+KT SD K K F E +K RLMQ ++
Sbjct: 61 KAKTHSDETVKRKAAEMFEEHKRK--------------------------RLMQKDFKRA 94
Query: 140 QMQALSVQQPPVSQPAPPAPMATAG-VPEQ--PPNQILFLTNLPEETSEMMLSMLFNQFP 196
+ A + P V+ P A + A VP++ PN++LFL N+P + E L+ +F++F
Sbjct: 95 EEDAKAQANPAVTTEKPRAAKSGAAVVPDEYVRPNKVLFLQNIPRDIDEEDLTNVFDRFE 154
Query: 197 GFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHA----MKISFAKK 246
GFKEVRLV R +AF EFENE + AK A TP A MK+++ ++
Sbjct: 155 GFKEVRLVSVRA-VAFAEFENEQFAITAKEATAN---TPIGAEGKPMKVTYQRQ 204
>gi|221054978|ref|XP_002258628.1| Small nuclear ribonucleoprotein (SnRNP) [Plasmodium knowlesi strain
H]
gi|193808697|emb|CAQ39400.1| Small nuclear ribonucleoprotein (SnRNP),putative [Plasmodium
knowlesi strain H]
Length = 192
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/226 (31%), Positives = 109/226 (48%), Gaps = 55/226 (24%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
I+ DL+ L+ F +G ++DIV K + RGQAFV+F IAS+T A ++++G F +K
Sbjct: 21 INVNDLRDLLFEYFCPYGNVLDIVIKKANQSRGQAFVVFNNIASSTLAYKNLKGKLFLNK 80
Query: 79 PMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQ 138
+ I Y+KT S ++ K+ GT+ P+ + K A +R+
Sbjct: 81 QININYAKTKSRIVEKLDGTY-----------KPITN-------YKSATGHGSRI----- 117
Query: 139 QQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGF 198
+ L VQ NLP E ++ L +LFNQ+PGF
Sbjct: 118 -NVFTLFVQ------------------------------NLPNEINKNALEILFNQYPGF 146
Query: 199 KEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFA 244
EVR +P R ++AFV+F + A L FK+TP H +KIS++
Sbjct: 147 CEVRHIPGR-NVAFVDFSSYQNGEVAMNGLQNFKVTPQHPIKISWS 191
>gi|389744433|gb|EIM85616.1| RNA-binding domain-containing protein [Stereum hirsutum FP-91666
SS1]
Length = 280
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 75/258 (29%), Positives = 123/258 (47%), Gaps = 32/258 (12%)
Query: 18 HISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYD 77
I +L+ L+A+F+ +G+++D+VA KT KMRGQAF++F ++A+AT+ALR+ G FYD
Sbjct: 22 QIQKEELRGQLFALFTTYGKVIDVVATKTQKMRGQAFLVFTDLAAATSALRATDGMLFYD 81
Query: 78 KPMRIQYSKTDSDVISKIKGTFMERPKKVRKQP---APVEDPAEAKKSKKKAAKEQARLM 134
KP+R+QY+KT S + + P +P + V+ A S +K +E +
Sbjct: 82 KPLRVQYAKTKSYATMRREDPNFVPPTAAHGRPLTDSQVKPIGGAGSSVQKRTREDEDME 141
Query: 135 QAQQQQMQ----------------ALSVQQPPVSQPAPPAPMATAGVPEQPPNQI---LF 175
+ Q+ + PP Q A A Q + L
Sbjct: 142 DGRAQKQKKAAAAEEESDDEEMEIDDDEDGPPAQQGGEQAATGAATTIPQTAGRSSARLL 201
Query: 176 LTNLPEETSEMMLSMLFNQFPGFKEVRL----------VPNRHDIAFVEFENEMQSAAAK 225
TNLP E ++ +LS+LF Q+ GF+ ++ + +A V F+ ++ AK
Sbjct: 202 CTNLPGEVTDSVLSVLFQQYQGFQSTQVAPAPTATANAAGQKGKMAQVVFDTPELASVAK 261
Query: 226 LALHGFKITPTHAMKISF 243
AL GF + M ++F
Sbjct: 262 EALDGFTLKKGWKMTVAF 279
>gi|84995232|ref|XP_952338.1| U1/2 small nuclear ribonucleoprotein [Theileria annulata strain
Ankara]
gi|65302499|emb|CAI74606.1| U1/2 small nuclear ribonucleoprotein, putative [Theileria annulata]
Length = 206
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 79/240 (32%), Positives = 118/240 (49%), Gaps = 51/240 (21%)
Query: 9 CVTNFVYV----THISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASAT 64
C T +VY HI LKK +Y +F +G I+DIVA KT +RGQAFVIF EI+SAT
Sbjct: 13 CQTLYVYNLDDQIHIDV--LKKLVYELFVPYGIIVDIVARKTKTLRGQAFVIFSEISSAT 70
Query: 65 NALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKK 124
AL+ + G +K ++I+Y+K R K K P+ ++A + K
Sbjct: 71 AALKGLNGRKILNKVLKIEYAKN--------------RSYKTLK-PSDYYKMSKANRGKF 115
Query: 125 KAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETS 184
K P+S P + ++G E LF+ N+P + S
Sbjct: 116 K------------------------PISD--FPDELRSSGTDESHS---LFVQNIPHDMS 146
Query: 185 EMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFA 244
L +LF Q+PGF+ R + R +AFV++ Q+ A L+GF+++ THA++IS A
Sbjct: 147 RESLELLFKQYPGFRGCRFIEGRF-VAFVDYSMASQAEIALEGLNGFRVSHTHALQISLA 205
>gi|345802821|ref|XP_003434975.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like [Canis
lupus familiaris]
Length = 88
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 50/70 (71%), Positives = 60/70 (85%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
I +LK+SLY +FSQF ++DIVALKT+KMR QAFVIFKE+ S+TNALR +QGFPFY K
Sbjct: 18 IKKEELKRSLYTLFSQFVHVVDIVALKTMKMREQAFVIFKELGSSTNALRQLQGFPFYGK 77
Query: 79 PMRIQYSKTD 88
PMRIQY+KTD
Sbjct: 78 PMRIQYAKTD 87
>gi|302696767|ref|XP_003038062.1| hypothetical protein SCHCODRAFT_72118 [Schizophyllum commune H4-8]
gi|300111759|gb|EFJ03160.1| hypothetical protein SCHCODRAFT_72118 [Schizophyllum commune H4-8]
Length = 261
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 75/239 (31%), Positives = 126/239 (52%), Gaps = 23/239 (9%)
Query: 23 DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRI 82
+L+ LYA+F+ +G+I+D+V K +MRGQA+++F ++ASAT ALR+ QG FYDKPM I
Sbjct: 27 ELRHQLYALFTTYGRIIDMVVSKAPRMRGQAWLVFADLASATTALRACQGMVFYDKPMHI 86
Query: 83 QYSKTDSDVISKIKGTFMERPKKVRKQP----------APVEDPAEAKKSKKKAAKEQAR 132
Y+K+ S K + P V P A ED A+ +++K++ A E +
Sbjct: 87 DYAKSKSFATLKREDPNFVPPTAVHASPFVNGKDPNKRARDEDTADTRQAKREKADESSD 146
Query: 133 LMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLF 192
+ + + Q PP + P + Q +++L TNLP+E +E +LS+LF
Sbjct: 147 EEMEIDDEDEQPTQQAPPPPLTSSAVPT----IVHQASSRLL-CTNLPQEVTEDVLSVLF 201
Query: 193 NQFPGFKEVRLV--------PNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISF 243
Q+ G ++V ++ +A V +E+ + AK AL GF++ M +++
Sbjct: 202 QQYRGLISTQVVQSPTPGPDGSKAKMAQVLYESAALGSVAKEALDGFQLKKGWNMSVAY 260
>gi|403417360|emb|CCM04060.1| predicted protein [Fibroporia radiculosa]
Length = 256
Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 68/237 (28%), Positives = 125/237 (52%), Gaps = 12/237 (5%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
++ +L+ L+A+F+ +G+++D+VA K KMRGQAF++F ++ AT A+R+ +G FYDK
Sbjct: 19 VNKEELRSQLFALFTTYGRVIDVVAAKGPKMRGQAFLVFADLTGATAAMRACEGIVFYDK 78
Query: 79 PMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQ 138
PMR++Y+KT S + + P V + A + + K+ + E R ++ ++
Sbjct: 79 PMRVEYAKTKSYATLQREDPNFVPPMSVHTKNANAQAASSEKRQRDDRMDEDERALKRER 138
Query: 139 QQMQALSVQQPPVSQPAPPAPMATAG--VPE--QPPNQILFLTNLPEETSEMMLSMLFNQ 194
++ + A + G +P Q + L TNLP+E ++ +L++LF Q
Sbjct: 139 AADDDDDDEEMEIEDDDDGAKETSTGGAMPAIVQSQSARLLCTNLPQEVTDDVLAVLFQQ 198
Query: 195 FPGFKEVRL----VPNRHD----IAFVEFENEMQSAAAKLALHGFKITPTHAMKISF 243
+ GF+ + PN +A V F++ ++AAK AL GF + M +++
Sbjct: 199 YQGFQSTHVAQSPTPNTAGQNVKMAQVIFDSPELASAAKEALDGFTLKKGWVMSVAY 255
>gi|259016049|gb|ACV89307.1| sans fille [Ctenocephalides felis]
Length = 82
Score = 109 bits (273), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 47/60 (78%), Positives = 58/60 (96%)
Query: 51 GQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQP 110
GQAFVIFKEIASA+NALR+MQGFPFYDKPMRI Y+KTDSDV++++KGT+ ERPKK+++QP
Sbjct: 1 GQAFVIFKEIASASNALRTMQGFPFYDKPMRIAYAKTDSDVVARMKGTYKERPKKIKEQP 60
>gi|259016057|gb|ACV89310.1| sans fille [Hydropsyche phalerata]
Length = 102
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/60 (81%), Positives = 57/60 (95%)
Query: 51 GQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQP 110
GQAFVIFKEI+SAT ALR+MQGFPFYDKPMRIQY KTDSDVI+K+KGTF ERPK++++QP
Sbjct: 1 GQAFVIFKEISSATVALRNMQGFPFYDKPMRIQYCKTDSDVIAKMKGTFQERPKRIKEQP 60
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 44/47 (93%), Positives = 46/47 (97%)
Query: 165 VPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIA 211
+ EQPPNQILFLTNLP+ETSEMMLSMLFNQFPGFKEVRLVPNRHDIA
Sbjct: 56 IKEQPPNQILFLTNLPDETSEMMLSMLFNQFPGFKEVRLVPNRHDIA 102
>gi|429327511|gb|AFZ79271.1| U1/2 small nuclear ribonucleoprotein, putative [Babesia equi]
Length = 207
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/237 (32%), Positives = 114/237 (48%), Gaps = 49/237 (20%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+YVT+ I +L K LY +F +G I+DIVA KT +RGQAF++F EI SAT AL+
Sbjct: 15 LYVTNLDDQIHVRELVKLLYELFCPYGYIIDIVARKTKTLRGQAFIVFSEITSATAALKG 74
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRK-QPAPVEDPAEAKKSKKKAAK 128
+ G K ++I YSK S +K + R K+ K Q PV K + ++K
Sbjct: 75 LNGRSILAKKIKIVYSKNKS--YKAMKPSDYYRIGKISKLQAKPVISSTTEDKPAEASSK 132
Query: 129 EQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMML 188
E + LF+ N+P + ++ +
Sbjct: 133 E-----------------------------------------SHTLFVENIPPDINKDGV 151
Query: 189 SMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAK 245
+LFNQ+PGFK R + R +AF++F Q+ AA L GF+++ HA+ ISFAK
Sbjct: 152 ELLFNQYPGFKGCRFIEGRC-VAFIDFALVSQAEAALQGLQGFRMSHNHALHISFAK 207
>gi|116181854|ref|XP_001220776.1| hypothetical protein CHGG_01555 [Chaetomium globosum CBS 148.51]
gi|88185852|gb|EAQ93320.1| hypothetical protein CHGG_01555 [Chaetomium globosum CBS 148.51]
Length = 196
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 98/179 (54%), Gaps = 36/179 (20%)
Query: 5 LAHICVTNFVYVTHISST-----DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKE 59
+A + +YVT++ S DL+ +LY +FS +G ++D+VALKT+KMRGQA +++K+
Sbjct: 14 VASVPPNQTLYVTNLPSAKIQKEDLRTALYMLFSTYGAVLDVVALKTMKMRGQAHIVYKD 73
Query: 60 IASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEA 119
I +AT A+RS+ GF F+ + M+I Y+K+ S+VI+K+ GTF
Sbjct: 74 IQTATQAMRSLDGFEFFGQEMKISYAKSKSNVIAKLDGTF-------------------- 113
Query: 120 KKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTN 178
K A AR+ + +QQ + P P AP+A G+P +PP +T+
Sbjct: 114 ---KITTAATAARV--------EVTDLQQSIFNAPVPGAPVAAPGLPSKPPGADHVMTD 161
>gi|428671090|gb|EKX72009.1| U1 snRNP protein, putative [Babesia equi]
Length = 294
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 79/252 (31%), Positives = 121/252 (48%), Gaps = 35/252 (13%)
Query: 24 LKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83
LK L +FS++G I+DIVA+ + +GQA++I+ +I SA A+ +QG ++ M I
Sbjct: 47 LKGDLQDLFSKYGTILDIVAMSSFWRKGQAWIIYNDIESAKKAMEELQGHMYHGHAMHIN 106
Query: 84 YSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQA 143
++ SD+ISK GTF ER K +K P +++ E ++ K + Q + M
Sbjct: 107 FALEKSDLISKADGTFKEREKGPKK-PRAIKEREEKQRLLFK--EMQRDFITGNLDGMAH 163
Query: 144 LSVQQPPVSQPAPP---------------------APMATAGVPEQP---------PNQI 173
Q VSQ P A + G Q PN+
Sbjct: 164 AIPHQDGVSQFNPETAKALAAAQARAAELALASKRAIQSAKGANAQRRGGFSAPVIPNRT 223
Query: 174 LFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKI 233
LF+ +LPE + + LF + PG+ E R++P R +AFV+F+N+M S A L G I
Sbjct: 224 LFVESLPEGVTTNDVISLFCRMPGYIEARVIPARK-VAFVDFDNDMNSGYAMQTLQGQTI 282
Query: 234 TPTHAMKISFAK 245
T + IS+AK
Sbjct: 283 NGT-MISISYAK 293
>gi|71030602|ref|XP_764943.1| U2 small nuclear ribonucleoprotein B [Theileria parva strain
Muguga]
gi|68351899|gb|EAN32660.1| U2 small nuclear ribonucleoprotein B, putative [Theileria parva]
Length = 206
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 118/238 (49%), Gaps = 47/238 (19%)
Query: 9 CVTNFVYVTH--ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNA 66
C T +VY + I LKK LY +F +G I+DIVA +T +RGQAFV+F EI+SAT A
Sbjct: 13 CQTLYVYNLNDQIHVEVLKKLLYELFVPYGIIVDIVARRTKTLRGQAFVVFSEISSATAA 72
Query: 67 LRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKA 126
L+ + G +K ++I+Y+K R K K P+ ++A ++K K
Sbjct: 73 LKGLNGRKVLNKVLKIEYAKN--------------RSYKTLK-PSDYYKMSKANRAKLKH 117
Query: 127 AKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEM 186
+ P + ++ E + LF+ N+P + S+
Sbjct: 118 VSD--------------------------LPEDLRSSLTDE---SHALFVQNIPHDMSKE 148
Query: 187 MLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFA 244
L +LF Q+PGF+ R + R +AFV++ Q+ A L+GF+++ THA++IS A
Sbjct: 149 SLELLFKQYPGFRGCRFIEGRF-VAFVDYSMASQAEIALEGLNGFRVSHTHALQISLA 205
>gi|156088599|ref|XP_001611706.1| U2 small nuclear ribonucleoprotein B' [Babesia bovis T2Bo]
gi|154798960|gb|EDO08138.1| U2 small nuclear ribonucleoprotein B', putative [Babesia bovis]
Length = 213
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 113/241 (46%), Gaps = 52/241 (21%)
Query: 8 ICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNAL 67
+ V+N H++ DL+K LY +G+I+DI A +T K+RGQAFV F EIASA +A
Sbjct: 18 LYVSNLDDRIHVN--DLRKLLYEFLIPYGEIVDISARRTQKLRGQAFVSFSEIASAISAF 75
Query: 68 RSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKK---SKK 124
+ + G F D+P+++ Y+ R Q PAE + S +
Sbjct: 76 KGVNGRSFLDRPLKVAYA---------------------RNQGYKSMKPAECYRLLTSAR 114
Query: 125 KAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETS 184
EQ + + + A S E LF+ NL + +
Sbjct: 115 SLPSEQVMI----EDTLDANS---------------------EGGERHTLFVENLHPDMN 149
Query: 185 EMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFA 244
+M + +LF Q+PG+K+ R V + +AFV+F Q A L GF ++ +HA++ISFA
Sbjct: 150 KMSVELLFQQYPGYKDTRFVEGKC-VAFVDFATAYQGEVALQGLQGFSVSHSHALRISFA 208
Query: 245 K 245
K
Sbjct: 209 K 209
>gi|301761836|ref|XP_002916340.1| PREDICTED: LOW QUALITY PROTEIN: u2 small nuclear ribonucleoprotein
B''-like [Ailuropoda melanoleuca]
Length = 163
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 52/74 (70%), Positives = 59/74 (79%)
Query: 173 ILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFK 232
ILFL + EE +EMM SMLFNQFPGFKEV LVP RHDIAF+EFEN+ Q+ A AL FK
Sbjct: 86 ILFLISFSEEINEMMXSMLFNQFPGFKEVLLVPXRHDIAFMEFENDEQAGVAXDALQEFK 145
Query: 233 ITPTHAMKISFAKK 246
ITP +AMKIS+AKK
Sbjct: 146 ITPXNAMKISYAKK 159
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/83 (55%), Positives = 59/83 (71%), Gaps = 1/83 (1%)
Query: 1 MNIILAHICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEI 60
M+I +HI TN + I +L+ SL A+FSQFG ++DIVALK + MRGQ FVI KE+
Sbjct: 1 MDIRPSHIIDTNNMN-DKIKKEELESSLXALFSQFGHVVDIVALKAMNMRGQDFVIVKEL 59
Query: 61 ASATNALRSMQGFPFYDKPMRIQ 83
AS T+A R +QGFPFY K M+IQ
Sbjct: 60 ASPTSAFRQLQGFPFYGKXMQIQ 82
>gi|396458052|ref|XP_003833639.1| similar to RNA binding domain-containing protein [Leptosphaeria
maculans JN3]
gi|312210187|emb|CBX90274.1| similar to RNA binding domain-containing protein [Leptosphaeria
maculans JN3]
Length = 182
Score = 106 bits (264), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 49/96 (51%), Positives = 74/96 (77%), Gaps = 4/96 (4%)
Query: 23 DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRI 82
DLK++LY +F+ +G ++DIVALKT+KMRGQA V+F+++ S+T A+R++QGF F+ K M+I
Sbjct: 38 DLKRNLYMLFATYGVVIDIVALKTMKMRGQAHVVFRDVDSSTQAMRALQGFTFFGKEMQI 97
Query: 83 QYSKTDSDVISKIKGTF-MERPKKVRKQPAPVEDPA 117
Y+KT SD ISK+ GT+ + P+K ++P ED A
Sbjct: 98 AYAKTKSDAISKLDGTYKLPEPEKTGEEP---EDSA 130
>gi|150863938|ref|XP_001382592.2| hypothetical protein PICST_40739 [Scheffersomyces stipitis CBS
6054]
gi|149385194|gb|ABN64563.2| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 220
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 106/214 (49%), Gaps = 33/214 (15%)
Query: 12 NFVYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNAL 67
N +YV + +S L++SL IF++FG I+ I A K LKM+GQAF+ F+ SA AL
Sbjct: 9 NTIYVHNLNDKVSLKKLRQSLDEIFNKFGTIIQITAHKNLKMKGQAFITFETAESAAKAL 68
Query: 68 RSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAA 127
+Q ++KP++IQY+KT+SD F + V P P+E E K A
Sbjct: 69 VKLQNHQLFNKPIKIQYAKTNSD------NYFTQ----VANDPKPIETRKELK------A 112
Query: 128 KEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMM 187
K+Q + A + + + + PPN+IL L NL +
Sbjct: 113 KQQTKKRTADESEQ------------KPQKKKIKIDDWKKLPPNKILLLQNLSGSVDQTK 160
Query: 188 LSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQS 221
LS F QF GF RLV R +++FVEFEN+ S
Sbjct: 161 LSSYFEQFAGFVTARLVKAR-NLSFVEFENDSAS 193
>gi|367052635|ref|XP_003656696.1| hypothetical protein THITE_2121694 [Thielavia terrestris NRRL 8126]
gi|347003961|gb|AEO70360.1| hypothetical protein THITE_2121694 [Thielavia terrestris NRRL 8126]
Length = 203
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 45/100 (45%), Positives = 73/100 (73%), Gaps = 5/100 (5%)
Query: 5 LAHICVTNFVYVTHISST-----DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKE 59
+A + +YVT++ S DL+ +LY +FS +G ++D+VALKT+KMRGQA +++K+
Sbjct: 15 VASVPPNQTLYVTNLPSAKIQKEDLRTALYMLFSTYGSVLDVVALKTMKMRGQAHIVYKD 74
Query: 60 IASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTF 99
I +AT A+RS+ GF F +PM+I Y+K+ S++I+K+ GTF
Sbjct: 75 IQTATQAMRSLDGFEFLGRPMKISYAKSKSNIIAKLDGTF 114
>gi|451848678|gb|EMD61983.1| hypothetical protein COCSADRAFT_192065 [Cochliobolus sativus
ND90Pr]
Length = 178
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/94 (52%), Positives = 72/94 (76%), Gaps = 2/94 (2%)
Query: 23 DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRI 82
DLK+SLY +F+ +G I+DIVALKT+KMRGQA V+F++I S+T A+R++QGF F+ K M+I
Sbjct: 35 DLKRSLYMLFATYGVILDIVALKTMKMRGQAHVVFRDIDSSTQAMRALQGFTFFGKDMQI 94
Query: 83 QYSKTDSDVISKIKGTF-MERPKKVR-KQPAPVE 114
Y+KT SD ++K+ GT+ M P++ Q AP +
Sbjct: 95 AYAKTKSDTVAKLDGTYKMPEPERAEDDQQAPAQ 128
>gi|260940453|ref|XP_002614526.1| hypothetical protein CLUG_05304 [Clavispora lusitaniae ATCC 42720]
gi|238851712|gb|EEQ41176.1| hypothetical protein CLUG_05304 [Clavispora lusitaniae ATCC 42720]
Length = 230
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 132/245 (53%), Gaps = 37/245 (15%)
Query: 10 VTNFVYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATN 65
V + +YV + +S LK L ++F ++G+++ I A + LKM+GQAFV + + S+
Sbjct: 15 VLDTLYVNNLNEKVSLNKLKAVLNSLFGRYGKVIQITAHRNLKMKGQAFVTYADPKSSDK 74
Query: 66 ALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKK 125
ALR +QG P + KP+RI ++K SD +++ F +A +++
Sbjct: 75 ALRKLQGRPVFKKPIRITWAKASSDEYNRLLQNF------------------DAIAKRQE 116
Query: 126 AAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQ---PPNQILFLTNLPE- 181
KE+ RL + ++Q Q+P QP + M+ + + + PPN IL L NL +
Sbjct: 117 LKKERERLRKEKEQ-------QKPQTPQPG-TSQMSKSQIKQWKSLPPNNILLLQNLADH 168
Query: 182 ETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKI 241
+ S +L +F+ F GF+ VRL+ R +AFV+F++E +A A L G + +A+ +
Sbjct: 169 QLSNEVLDAIFSVFNGFERVRLIKFRK-LAFVDFDSET-NATACLEKLGSSDSLENAL-L 225
Query: 242 SFAKK 246
++AKK
Sbjct: 226 TYAKK 230
>gi|425770060|gb|EKV08535.1| U1 small nuclear ribonucleoprotein A, putative [Penicillium
digitatum Pd1]
gi|425771753|gb|EKV10190.1| U1 small nuclear ribonucleoprotein A, putative [Penicillium
digitatum PHI26]
Length = 188
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 71/96 (73%), Gaps = 3/96 (3%)
Query: 18 HISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYD 77
I DL+ +LYA+FS +G ++D+V +KT+KMRGQA ++FK++ ++T ALR++QGF F+
Sbjct: 35 RIQKNDLRTALYALFSTYGTVLDVVTMKTVKMRGQAHIVFKDVQASTQALRALQGFEFFG 94
Query: 78 KPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPV 113
K M+I Y+K S+VISK++GT++ V PAPV
Sbjct: 95 KQMKIVYAKGSSNVISKLRGTYV---APVEAAPAPV 127
>gi|399218844|emb|CCF75731.1| unnamed protein product [Babesia microti strain RI]
Length = 199
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 107/229 (46%), Gaps = 54/229 (23%)
Query: 18 HISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYD 77
+I+ +L LY +F +G+++DIVA + RGQAF++FKEIASATNALRS+QG
Sbjct: 23 NINIKELTHLLYELFVPYGEVIDIVAQRGNAKRGQAFIVFKEIASATNALRSLQGRVILG 82
Query: 78 KPMRIQYSKTDSDVISKIKGTF-MERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQA 136
K + + Y+KT S+ G F + +PK Q V+ P +
Sbjct: 83 KKLNLNYAKTKSNATLIQMGAFKLNKPKADVIQDIKVDAPQDV----------------- 125
Query: 137 QQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFP 196
+F+ NLP +T++ + +LF+Q+P
Sbjct: 126 -----------------------------------HTIFVENLPPDTTQRAVEILFSQYP 150
Query: 197 GFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAK 245
G+ R + +R +AFV++E +Q+ L GF+ITP + + A+
Sbjct: 151 GYVGCRFILDRG-VAFVDYEKSVQAEVTIQGLQGFRITPDFPISLKIAR 198
>gi|406862452|gb|EKD15502.1| RNA recognition domain-containing protein [Marssonina brunnea f.
sp. 'multigermtubi' MB_m1]
Length = 211
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 45/91 (49%), Positives = 72/91 (79%), Gaps = 5/91 (5%)
Query: 14 VYVTHISST-----DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALR 68
+YVT++ S+ DL+ SLY +FS +G ++D+VALKT+KMRGQA V+++++ +AT A+R
Sbjct: 31 LYVTNLPSSKIQKSDLRISLYMLFSTYGPVLDVVALKTMKMRGQAHVVYRDVQTATQAMR 90
Query: 69 SMQGFPFYDKPMRIQYSKTDSDVISKIKGTF 99
++QGF + + M+IQY+K+ SDVI+K+ GTF
Sbjct: 91 ALQGFELFGRQMQIQYAKSKSDVIAKLDGTF 121
>gi|82596021|ref|XP_726090.1| U1 small nuclear ribonucleoprotein a [Plasmodium yoelii yoelii
17XNL]
gi|23481350|gb|EAA17655.1| u1 small nuclear ribonucleoprotein a [Plasmodium yoelii yoelii]
Length = 508
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 75/254 (29%), Positives = 118/254 (46%), Gaps = 52/254 (20%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
I D+KKSL IF+Q+G I DI+ +K+ +GQA++++ I S+T AL ++QGF + K
Sbjct: 198 IKCEDMKKSLKNIFNQYGLIEDIIVMKSFWRKGQAWIVYDTIESSTKALNALQGFVLFGK 257
Query: 79 PMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQ 138
M+I YS SDV +K GTF+ER K+ +K +E KK K+ K Q + Q
Sbjct: 258 IMQINYSHNKSDVHTKRNGTFVERSKEPKKPKQIIE---REKKQKEIFEKMQQNYFEMQI 314
Query: 139 QQMQALS-----------------------VQQ-----------------------PPVS 152
++A+ QQ P +
Sbjct: 315 NHIKAMHNEGLERNKNFDLSQMDKETLIARAQQKANEEKKRKKGEDPLQNNTNYNIPNIH 374
Query: 153 QPAPPAPMATAGVPEQP--PNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDI 210
P A A + P P +ILF+ N+ E + + +F F GF E R++P R ++
Sbjct: 375 PPQFYAMNNFAPIQNNPVIPYKILFVENVDENVNTEAFNDIFKAFSGFVEARIIPQR-NV 433
Query: 211 AFVEFENEMQSAAA 224
AFV++ +E + +A
Sbjct: 434 AFVDYTDESSATSA 447
>gi|425868397|gb|AFY04329.1| sans fille, partial [Ogcodes basalis]
Length = 88
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 47/72 (65%), Positives = 62/72 (86%), Gaps = 1/72 (1%)
Query: 51 GQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVR-KQ 109
G+ FVIFKEI+SA+NALR+MQGFPFYDKP+RI Y+KT+SD+++++KGTF ERPK+V+ +
Sbjct: 1 GRRFVIFKEISSASNALRTMQGFPFYDKPLRIAYAKTESDIVARMKGTFKERPKRVKPPK 60
Query: 110 PAPVEDPAEAKK 121
P P ED E KK
Sbjct: 61 PQPSEDRKEKKK 72
>gi|85000071|ref|XP_954754.1| U1 snRNP protein [Theileria annulata strain Ankara]
gi|65302900|emb|CAI75278.1| U1 snRNP protein, putative [Theileria annulata]
Length = 346
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 110/233 (47%), Gaps = 36/233 (15%)
Query: 24 LKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83
LK+ L +F ++G+I+ IVA+K+ RGQA+++F + S+T A+ +QGF Y ++I
Sbjct: 66 LKRDLMELFGKYGKILQIVAMKSFWRRGQAWIVFDNVESSTQAMNELQGFKIYGHTLQIN 125
Query: 84 YSKTDSDVISKIKGTFMER------------------------PKKVRKQPAPVE----- 114
Y+ SD++S +GTF++R P PV
Sbjct: 126 YALEKSDIVSIPEGTFVQRPKGPKKPKKILQREMMLKQLYNSNPSNPLLTQNPVNPAHNL 185
Query: 115 --DPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPP-- 170
+P S M+ Q Q + L++ P + P + G + P
Sbjct: 186 MGNPESFGFSDAPVNNLNMGTMELQGQVVNNLNLPYQPHNLTHPFPTHHSPGFSDDPSLM 245
Query: 171 --NQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQS 221
N+ LF+ NLP+ S ++ LF+ PGF E +L+ ++H +AF++F+NE S
Sbjct: 246 KRNRTLFVENLPDNISHNDVNNLFHNMPGFVETKLIASKH-VAFIDFDNEFNS 297
>gi|380494672|emb|CCF32976.1| RNA recognition domain-containing protein [Colletotrichum
higginsianum]
Length = 204
Score = 103 bits (257), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 45/100 (45%), Positives = 71/100 (71%), Gaps = 5/100 (5%)
Query: 5 LAHICVTNFVYVTHISST-----DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKE 59
+A I +YVT++ S DL+ LY +FS +G ++DIVALKT+KMRGQA + F++
Sbjct: 20 VATISPNQTLYVTNLPSNKIQKQDLRTELYLLFSTYGPVLDIVALKTMKMRGQAHITFRD 79
Query: 60 IASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTF 99
+ +AT A+RS++GF F +P+ IQY+K+ SD ++K+ GT+
Sbjct: 80 VQTATQAMRSLEGFEFLGRPLTIQYAKSKSDFVAKLDGTY 119
>gi|336373622|gb|EGO01960.1| hypothetical protein SERLA73DRAFT_177630 [Serpula lacrymans var.
lacrymans S7.3]
gi|336386441|gb|EGO27587.1| hypothetical protein SERLADRAFT_461313 [Serpula lacrymans var.
lacrymans S7.9]
Length = 262
Score = 103 bits (257), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 126/243 (51%), Gaps = 21/243 (8%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
I+ +++ L+A+F+ G+++D+VA K KMRGQAF++F ++A AT A+R+ +G FYDK
Sbjct: 22 INKEEMRSQLFALFTTHGRVIDVVASKGPKMRGQAFLVFTDLAGATTAMRACEGMIFYDK 81
Query: 79 PMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARL----- 133
P+RI Y+K+ S S+ + P V + ++ S K +++ +
Sbjct: 82 PLRITYAKSKSYATSRREDPNFVPPTSVHARSNLLQIGKSTISSADKRQRDEEDVDGERK 141
Query: 134 -----MQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMML 188
+ + + + + + + Q PA M + EQP +L TNLP+E ++ +L
Sbjct: 142 SKRERSEEESEDDEEMEIDEDEEQQNRVPATMPQ--ITEQPSAHLL-CTNLPQEVTDDVL 198
Query: 189 SMLFNQFPGFKEVRLVPN--------RHDIAFVEFENEMQSAAAKLALHGFKITPTHAMK 240
S+LF Q+ GF+ + P+ + +A V FE+ + AK AL GF + M
Sbjct: 199 SVLFQQYQGFQSTHVSPSPTSNAAGMKVKMAQVLFESPELATTAKEALDGFALKKGWKMT 258
Query: 241 ISF 243
+++
Sbjct: 259 VAY 261
>gi|50551277|ref|XP_503112.1| YALI0D21450p [Yarrowia lipolytica]
gi|49648980|emb|CAG81306.1| YALI0D21450p [Yarrowia lipolytica CLIB122]
Length = 226
Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 75/249 (30%), Positives = 122/249 (48%), Gaps = 30/249 (12%)
Query: 5 LAHICVTNFVYVTHISST----DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEI 60
+A I +Y+ +I+ LK +L I ++G ++D+VA L++RGQAFV+F I
Sbjct: 1 MASIAPCETIYIRNINEKIKIPTLKTTLKEICKEYGDVLDVVAHGNLRLRGQAFVVFDSI 60
Query: 61 ASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAK 120
SA +A+ ++ +S + +KG+ +E V +P + K
Sbjct: 61 DSAESAISAL-----------------NSTKVDGLKGSVVE----VTYAKSPSDATMAKK 99
Query: 121 KSKKKAAKEQARLMQAQQQQMQALSVQQP-PVSQPAPPAPMATAGVPE--QPPNQILFLT 177
K+ A +AR+ Q + +Q+ + ++ PV PA A P ++IL L
Sbjct: 100 GDKELDAHVRARVAQKELKQLSDSNKRRAEPVRTAETPAKKAKTSTETTYNPVHKILLLQ 159
Query: 178 NLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTH 237
NLP+ S+ ++ LF+ PG+ EVRLVP R + F EFE E Q+ AK G I
Sbjct: 160 NLPKSASQDTVAALFSDLPGYVEVRLVPARQ-VGFAEFETEAQAVVAKEKSQGADI-DGE 217
Query: 238 AMKISFAKK 246
+ +S+AKK
Sbjct: 218 KLIVSYAKK 226
>gi|259484735|tpe|CBF81211.1| TPA: U1 small nuclear ribonucleoprotein A, putative
(AFU_orthologue; AFUA_6G06490) [Aspergillus nidulans
FGSC A4]
Length = 188
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 65/78 (83%)
Query: 23 DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRI 82
DL+ +LY +FS +G ++DIVA+KT KMRGQA V+FK+I ++T A+R++QGF F+ KPM+I
Sbjct: 36 DLRLALYTLFSTYGTVLDIVAMKTEKMRGQAHVVFKDIQASTQAMRALQGFEFFGKPMKI 95
Query: 83 QYSKTDSDVISKIKGTFM 100
Y+K SDVI++++GT++
Sbjct: 96 VYAKGSSDVIARLRGTYV 113
>gi|226292456|gb|EEH47876.1| RNA binding domain-containing protein [Paracoccidioides
brasiliensis Pb18]
Length = 206
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 44/102 (43%), Positives = 72/102 (70%), Gaps = 4/102 (3%)
Query: 2 NIILAHICVTNFVYVTHISST----DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIF 57
N I + F+Y T++ DL+ +LYA+FS +G ++D+VA+KT KMRGQA V+F
Sbjct: 16 NQTSVEIFIPRFLYCTNLPDKLKKPDLRLALYALFSTYGTVLDVVAMKTAKMRGQAHVVF 75
Query: 58 KEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTF 99
++I ++T A+R++QGF F+ K M+I Y K S++I+K++GT+
Sbjct: 76 RDIQASTQAMRALQGFEFFGKEMKIVYGKGSSNIIAKLRGTY 117
>gi|425868376|gb|AFY04320.1| sans fille, partial [Bibio longipes]
Length = 96
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/51 (90%), Positives = 49/51 (96%)
Query: 49 MRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTF 99
MRGQAFVIFKEI+SATNALR+MQGFPFYDKPMRI YSK DSDVI+KIKGTF
Sbjct: 1 MRGQAFVIFKEISSATNALRTMQGFPFYDKPMRISYSKCDSDVIAKIKGTF 51
>gi|367018898|ref|XP_003658734.1| hypothetical protein MYCTH_2294867 [Myceliophthora thermophila ATCC
42464]
gi|347006001|gb|AEO53489.1| hypothetical protein MYCTH_2294867 [Myceliophthora thermophila ATCC
42464]
Length = 200
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 73/100 (73%), Gaps = 5/100 (5%)
Query: 5 LAHICVTNFVYVTHISST-----DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKE 59
+A + +YVT++ S DL+ +LY +FS +G ++D+VALKT+KMRGQA +++K+
Sbjct: 14 VASVPPNQTLYVTNLPSAKIQKEDLRTALYMLFSTYGSVLDVVALKTMKMRGQAHIVYKD 73
Query: 60 IASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTF 99
I +AT A+R++ GF F+ + M+I Y+K+ S++I+K+ GTF
Sbjct: 74 IQTATQAMRALNGFEFFGREMKISYAKSKSNIIAKLDGTF 113
Score = 37.7 bits (86), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 49/102 (48%), Gaps = 17/102 (16%)
Query: 155 APPAPMATAGVPEQPPNQILFLTNLP-----EETSEMMLSMLFNQFP------GFKEVRL 203
APP P A V PPNQ L++TNLP +E L MLF+ + K +++
Sbjct: 5 APP-PGLPAKVASVPPNQTLYVTNLPSAKIQKEDLRTALYMLFSTYGSVLDVVALKTMKM 63
Query: 204 VPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAK 245
H I + + + Q A AL+GF+ MKIS+AK
Sbjct: 64 RGQAH-IVYKDIQTATQ---AMRALNGFEFF-GREMKISYAK 100
>gi|451998492|gb|EMD90956.1| hypothetical protein COCHEDRAFT_1137201 [Cochliobolus
heterostrophus C5]
Length = 178
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/117 (46%), Positives = 82/117 (70%), Gaps = 6/117 (5%)
Query: 23 DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRI 82
DLK+SLY +F+ +G I++IVALKT+KMRGQA V+F+++ ++T A+R++QGF F+ K M+I
Sbjct: 35 DLKRSLYMLFATYGVILEIVALKTMKMRGQAHVVFRDVDASTQAMRALQGFTFFGKDMQI 94
Query: 83 QYSKTDSDVISKIKGTF-MERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQ 138
Y+KT SD ++K+ GT+ M P++ A E A A+ S AA E+A + AQ
Sbjct: 95 AYAKTKSDTVAKLDGTYKMPEPER-----ADDEQQAPAQTSGFGAAPEKAVPVNAQD 146
>gi|156081688|ref|XP_001608337.1| U2 small nuclear ribonucleoprotein B'' [Plasmodium vivax Sal-1]
gi|148800908|gb|EDL42313.1| U2 small nuclear ribonucleoprotein B'', putative [Plasmodium vivax]
Length = 192
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 107/226 (47%), Gaps = 55/226 (24%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
++ DL+ L+ F +G ++D+V K + RGQAFV+F +AS+T A + ++G F +K
Sbjct: 21 VNVQDLRDLLFEFFCPYGNVLDVVIKKANQSRGQAFVVFNTVASSTLAYKHLKGKLFLNK 80
Query: 79 PMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQ 138
+ I Y+KT S +I K++GT+ ++ + K AA +R
Sbjct: 81 HININYAKTKSRIIEKLEGTY------------------KSITNYKSAAGLGSR------ 116
Query: 139 QQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGF 198
+ L VQ P E ++ L +LF+Q+PGF
Sbjct: 117 ANVFTLFVQNLP------------------------------NEINKSALEILFSQYPGF 146
Query: 199 KEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFA 244
EVR +P R ++AFV+F + A L FK+TP H MKIS++
Sbjct: 147 CEVRHIPGR-NVAFVDFSSYQNGEVAMSGLQSFKVTPQHPMKISWS 191
>gi|430813156|emb|CCJ29457.1| unnamed protein product [Pneumocystis jirovecii]
Length = 121
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 42/82 (51%), Positives = 67/82 (81%)
Query: 18 HISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYD 77
+I DL++SLY +FS +G ++DI+ALKT+KMRGQA ++F+++ASAT A+R++QGF F+
Sbjct: 5 NIKKEDLRQSLYCLFSFYGPVLDIIALKTMKMRGQAHIVFRDVASATAAMRALQGFVFFG 64
Query: 78 KPMRIQYSKTDSDVISKIKGTF 99
K M+I+Y++ S+ I+K+ GTF
Sbjct: 65 KEMKIEYARRKSNAIAKLDGTF 86
>gi|340923892|gb|EGS18795.1| U2 small nuclear ribonucleoprotein B'-like protein [Chaetomium
thermophilum var. thermophilum DSM 1495]
Length = 201
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 45/100 (45%), Positives = 71/100 (71%), Gaps = 5/100 (5%)
Query: 5 LAHICVTNFVYVTHISST-----DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKE 59
+A I +YVT++ S DL+ +LY +FS +G ++D+VALKT+KMRGQA +++K+
Sbjct: 15 VAAIPPNQTLYVTNLPSAKIQKEDLRTALYMLFSTYGSVLDVVALKTMKMRGQAHIVYKD 74
Query: 60 IASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTF 99
I +AT A+R++ GF F +PM+I Y+K S +I+K+ GTF
Sbjct: 75 IQTATMAMRALDGFEFLGRPMKISYAKGKSHIIAKLDGTF 114
>gi|320032581|gb|EFW14533.1| hypothetical protein CPSG_08791 [Coccidioides posadasii str.
Silveira]
Length = 182
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 64/77 (83%)
Query: 23 DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRI 82
DL+ +LY +FS +G ++D+VA+KT KMRGQA V+F++I ++T A+R++QGF F+ K MRI
Sbjct: 30 DLRLALYTLFSTYGTVLDVVAMKTEKMRGQAHVVFRDIQTSTQAMRALQGFNFFGKEMRI 89
Query: 83 QYSKTDSDVISKIKGTF 99
Y+K +SD+I+K++GT+
Sbjct: 90 VYAKGNSDIIAKLRGTY 106
>gi|255938712|ref|XP_002560126.1| Pc14g01320 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211584747|emb|CAP74273.1| Pc14g01320 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 188
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 41/83 (49%), Positives = 66/83 (79%)
Query: 18 HISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYD 77
I DL+ +LY++FS +G ++D+VA+KT KMRGQA ++FK++ ++T ALR++QGF F+
Sbjct: 35 RIQKNDLRTALYSLFSTYGTVLDVVAMKTSKMRGQAHIVFKDVQASTQALRALQGFEFFG 94
Query: 78 KPMRIQYSKTDSDVISKIKGTFM 100
K M+I Y+K S+VISK++GT++
Sbjct: 95 KQMKIVYAKGSSNVISKLRGTYV 117
>gi|429858035|gb|ELA32870.1| RNA binding domain-containing protein [Colletotrichum
gloeosporioides Nara gc5]
Length = 196
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 71/100 (71%), Gaps = 5/100 (5%)
Query: 5 LAHICVTNFVYVTHISS-----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKE 59
++ I +YVT++ S DL+ LY +FS +G ++DIVA+KT+KMRGQA + F++
Sbjct: 20 VSQISPNQTLYVTNLPSAKIQKNDLRTELYLLFSTYGPVLDIVAMKTMKMRGQAHITFRD 79
Query: 60 IASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTF 99
I +AT A+RS++GF F +P+ IQY+K+ SD ++K+ GT+
Sbjct: 80 IQAATQAMRSLEGFEFLGRPLSIQYAKSKSDFVAKLDGTY 119
>gi|425868437|gb|AFY04348.1| sans fille, partial [Chamaepsila hennigi]
Length = 96
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/69 (71%), Positives = 55/69 (79%), Gaps = 1/69 (1%)
Query: 50 RGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQ 109
RGQAF F+EI SA+NALR+MQGFPFYDKPMRI YSK+DSD +KIKGTF ERPKK K
Sbjct: 1 RGQAFRHFQEIGSASNALRTMQGFPFYDKPMRIAYSKSDSDXXAKIKGTFKERPKKA-KI 59
Query: 110 PAPVEDPAE 118
P P + P E
Sbjct: 60 PKPAQTPEE 68
>gi|425868407|gb|AFY04334.1| sans fille, partial [Lonchoptera uniseta]
Length = 91
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 45/56 (80%), Positives = 51/56 (91%)
Query: 51 GQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKV 106
GQAFVIFKE SA+NA R+MQGFPFYDKPMRI YSKTDSD+++KIKGTF ERPKK+
Sbjct: 1 GQAFVIFKEXXSASNARRTMQGFPFYDKPMRIAYSKTDSDIVAKIKGTFKERPKKI 56
>gi|67482465|ref|XP_656582.1| U1snRNP-specific protein [Entamoeba histolytica HM-1:IMSS]
gi|56473795|gb|EAL51198.1| U1snRNP-specific protein, putative [Entamoeba histolytica
HM-1:IMSS]
Length = 232
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 110/226 (48%), Gaps = 36/226 (15%)
Query: 8 ICVTNFVYVTHISST----DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASA 63
I V+ +Y+ ++ + ++ SL +F +G ++ + K+LKMRGQAFVI+ SA
Sbjct: 17 IPVSCTLYINNLDQSIKPNRIRDSLNTVFGAYGNVLQVCVRKSLKMRGQAFVIYDTKESA 76
Query: 64 TNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSK 123
A+ S+Q +D+PM I YSK +SD+I K +G + R +K ++ +E E ++S
Sbjct: 77 QFAMESLQNHELFDRPMHINYSKVESDIIVKKQGKEITRERKPKQIKVQIEKTLEHEES- 135
Query: 124 KKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPP----NQILFLTNL 179
P++Q +P P N LF+ ++
Sbjct: 136 --------------------------PINQDIEKKESNETKLPPNSPTKYTNNRLFIKSV 169
Query: 180 PEETSEMMLSMLFNQFPGFKEVR-LVPNRHDIAFVEFENEMQSAAA 224
P+ S+ L LF Q GF EVR +V + +AF+EF++E+ S A
Sbjct: 170 PQNVSKQRLEELFKQQEGFVEVRYIVIKGNAVAFIEFKDEISSEKA 215
>gi|449709804|gb|EMD49000.1| U1snRNP, putative [Entamoeba histolytica KU27]
Length = 232
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 110/226 (48%), Gaps = 36/226 (15%)
Query: 8 ICVTNFVYVTHISST----DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASA 63
I V+ +Y+ ++ + ++ SL +F +G ++ + K+LKMRGQAFVI+ SA
Sbjct: 17 IPVSCTLYINNLDQSIKPNRIRDSLNTVFGAYGNVLQVCVRKSLKMRGQAFVIYDTKESA 76
Query: 64 TNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSK 123
A+ S+Q +D+PM I YSK +SD+I K +G + R +K ++ +E E ++S
Sbjct: 77 QFAMESLQNHELFDRPMHINYSKVESDIIVKKQGKEITRERKPKQIKVQIEKTLEHEES- 135
Query: 124 KKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPP----NQILFLTNL 179
P++Q +P P N LF+ ++
Sbjct: 136 --------------------------PINQDIEKKESNETKLPPNSPTKYTNNRLFIKSV 169
Query: 180 PEETSEMMLSMLFNQFPGFKEVR-LVPNRHDIAFVEFENEMQSAAA 224
P+ S+ L LF Q GF EVR +V + +AF+EF++E+ S A
Sbjct: 170 PQNVSKQRLEELFKQQEGFVEVRYIVIKGNAVAFIEFKDEISSEKA 215
>gi|156102613|ref|XP_001616999.1| U1A small nuclear ribonucleoprotein [Plasmodium vivax Sal-1]
gi|148805873|gb|EDL47272.1| U1A small nuclear ribonucleoprotein, putative [Plasmodium vivax]
Length = 504
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 84/266 (31%), Positives = 131/266 (49%), Gaps = 56/266 (21%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+YV +++ ++KK+L +F Q+G I D+V +K+ +GQA+V++ + S+T AL +
Sbjct: 229 LYVKNLNDRIKIDEMKKNLKDLFKQYGVIEDLVVMKSFWRKGQAWVVYDNVESSTKALNA 288
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMER------PKKV----RKQPAPVE----- 114
+QGF + K M+I YS SDV SK GTF+ER PK++ RKQ E
Sbjct: 289 LQGFVLFGKIMQINYSHNKSDVHSKRDGTFVERSKEPKKPKQILERERKQKEIFEMMQRN 348
Query: 115 ------------DPAEAKKSKK---KAAKEQARLMQAQQQQMQALS-------------- 145
E +K KK +QA + +AQ + + +
Sbjct: 349 FIEMQMNNFRIMQNNELEKRKKIDLSQIDKQALIAKAQAKAYEEKNKKKGEDFTNHNNNM 408
Query: 146 VQQPPVSQPAPP-APMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLV 204
QQP P P APM + V +ILF+ N+ E + + LF +F GF E R++
Sbjct: 409 YQQPSPFYPMNPFAPMQSNIVVAC---KILFVENVVENVNTQAFNDLFKKFSGFIEARII 465
Query: 205 PNRHDIAFVEFENEMQSAAAKLALHG 230
P R ++AFV++ +E AAA A+ G
Sbjct: 466 PQR-NVAFVDYSDE---AAATYAMKG 487
>gi|145475381|ref|XP_001423713.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124390774|emb|CAK56315.1| unnamed protein product [Paramecium tetraurelia]
Length = 270
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 127/231 (54%), Gaps = 22/231 (9%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
+++ +++++L+A+FSQ G+++DI+ K + MRGQAF++ ++ +A A ++ YDK
Sbjct: 59 VTAEEMRQTLFALFSQSGKVLDIIVKKNILMRGQAFILMEDEEAAIKAQKAFHNTQLYDK 118
Query: 79 PMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQ 138
M++ ++K S IS KG + E+ K P+ D + K+ KK+ ++ R M Q+
Sbjct: 119 VMKVNFAKEKSYYIS--KGDYEEKEK------LPMSD--KIKEHKKRIQDKRQREMINQK 168
Query: 139 QQMQALSVQQPPVSQPAPPAP---MATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQF 195
QQ +A P +S P + + +P Q PN++LF+ L + L F F
Sbjct: 169 QQREA-----PTISMPLAVNQYYYIFNSSIPNQ-PNKVLFVEGL-HLVDFVNLEQHFRNF 221
Query: 196 PGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
GF+E R + + +AFVEFE+E+Q+ L+G + ++IS+ KK
Sbjct: 222 YGFREFRGIKPK-GVAFVEFEDELQATNCLNELNGTQFEEV-TLQISYQKK 270
>gi|380746076|gb|AFE47971.1| sans fille, partial [Drosophila fulvimaculoides]
gi|380746148|gb|AFE48007.1| sans fille, partial [Drosophila fulvimacula flavorepleta]
Length = 99
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/128 (50%), Positives = 77/128 (60%), Gaps = 29/128 (22%)
Query: 56 IFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVED 115
IFKEI SA+NALR+MQGFPFYDKPMRI YSK+DSD+++K+KGT+ ERPKK
Sbjct: 1 IFKEIGSASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTYKERPKK---------- 50
Query: 116 PAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILF 175
K K A E+ + + +Q + P SQ EQPPNQILF
Sbjct: 51 ---VKPPKPAAGLEEKKDKKKKQSSAE----NSNPNSQ------------TEQPPNQILF 91
Query: 176 LTNLPEET 183
LTNLPEET
Sbjct: 92 LTNLPEET 99
>gi|221060785|ref|XP_002261962.1| U1 small nuclear ribonucleoprotein a [Plasmodium knowlesi strain H]
gi|193811112|emb|CAQ41840.1| U1 small nuclear ribonucleoprotein a, putative [Plasmodium knowlesi
strain H]
Length = 499
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 84/264 (31%), Positives = 130/264 (49%), Gaps = 52/264 (19%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+YV +++ ++KKSL +F Q+G I D+V +K+ +GQA+V++ + S+T AL +
Sbjct: 222 LYVKNLNDRIKIDEMKKSLKDLFKQYGVIEDLVVMKSFWRKGQAWVVYDTVESSTKALNA 281
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMER------PKKV----RKQPAPVE----- 114
+QGF + K M+I YS SDV SK GTF+ER PK++ RKQ E
Sbjct: 282 LQGFVLFGKIMQINYSHNKSDVHSKRDGTFVERSKEPKKPKQILERERKQKEIFEMMQRN 341
Query: 115 ------------DPAEAKKSKKKA----------AKEQARLMQAQQQQMQALSVQQPPV- 151
E +K KK AK QA+ + + ++ +
Sbjct: 342 FIEMQMNNFRIMQNNELEKRKKIDLSQMDTQDLIAKAQAKAYEEKNKKKNEDFTKNNNTM 401
Query: 152 -SQPAPPAPMATAGVPEQP----PNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPN 206
QP+P PM A P Q +ILF+ N+ E + + LF +F GF E R++P
Sbjct: 402 YQQPSPYYPM-NAFAPMQNNIVVACKILFVENVVENVNTEEFNDLFKKFSGFIEARIIPQ 460
Query: 207 RHDIAFVEFENEMQSAAAKLALHG 230
R ++AFV++ +E AAA A+ G
Sbjct: 461 R-NVAFVDYSDE---AAATNAMKG 480
>gi|407040284|gb|EKE40055.1| U1snRNP-specific protein, putative [Entamoeba nuttalli P19]
Length = 232
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 109/226 (48%), Gaps = 36/226 (15%)
Query: 8 ICVTNFVYVTHISST----DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASA 63
I V+ +Y+ ++ + ++ SL +F +G ++ + K+LKMRGQAFVI+ SA
Sbjct: 17 IPVSCTLYINNLDQSIKPNRIRDSLNTVFGAYGNVLQVCVRKSLKMRGQAFVIYDTKESA 76
Query: 64 TNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSK 123
A+ S+Q +D+PM I YSK +SD+I K +G + R +K ++ +E E ++S
Sbjct: 77 QFAMESLQNHELFDRPMHINYSKVESDIIVKNQGKEITRERKPKQIKVQIEKTLEHEES- 135
Query: 124 KKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPP----NQILFLTNL 179
P++Q +P P N LF+ ++
Sbjct: 136 --------------------------PINQDTEKKESNETKLPPNSPTKYTNNRLFIKSV 169
Query: 180 PEETSEMMLSMLFNQFPGFKEVR-LVPNRHDIAFVEFENEMQSAAA 224
P+ S+ L LF Q GF EVR +V + +AF+EF++E S A
Sbjct: 170 PQSVSKQRLEELFKQQEGFVEVRYIVIKGNAVAFIEFKDETSSEKA 215
>gi|189205583|ref|XP_001939126.1| U2 small nuclear ribonucleoprotein B [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187975219|gb|EDU41845.1| U2 small nuclear ribonucleoprotein B [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 182
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/77 (54%), Positives = 63/77 (81%)
Query: 23 DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRI 82
DLK++LY +F+ +G I+DIVALKT+KMRGQA V+F+++ S+T A+R++Q F F+ K M+I
Sbjct: 37 DLKRNLYMLFATYGVILDIVALKTMKMRGQAHVVFRDVDSSTQAMRALQAFTFFGKDMQI 96
Query: 83 QYSKTDSDVISKIKGTF 99
Y+KT SD I+K+ GT+
Sbjct: 97 TYAKTKSDTIAKLDGTY 113
>gi|169601282|ref|XP_001794063.1| hypothetical protein SNOG_03502 [Phaeosphaeria nodorum SN15]
gi|111067587|gb|EAT88707.1| hypothetical protein SNOG_03502 [Phaeosphaeria nodorum SN15]
Length = 177
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 43/90 (47%), Positives = 69/90 (76%), Gaps = 4/90 (4%)
Query: 14 VYVTHISST----DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+YV +++ DLK+SLY +F+ +G ++D+VALKT KMRGQA V+F+++ ++T A+R+
Sbjct: 24 LYVRNLNDKLPKEDLKRSLYMLFATYGVVLDVVALKTAKMRGQAHVVFRDLDASTQAMRA 83
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTF 99
+QGF F+ K M+I Y+KT SD I+K+ GT+
Sbjct: 84 LQGFTFFGKDMQIAYAKTKSDTIAKLDGTY 113
>gi|347829902|emb|CCD45599.1| hypothetical protein [Botryotinia fuckeliana]
Length = 201
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 41/91 (45%), Positives = 69/91 (75%), Gaps = 5/91 (5%)
Query: 14 VYVTHISST-----DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALR 68
+Y+T++ S+ DL++ LY + S +G ++D++ALK++KMRGQA V++++I +AT A+R
Sbjct: 20 IYITNLPSSKIQKDDLRRELYTLCSTYGPVLDVIALKSMKMRGQAHVVYRDIQTATQAMR 79
Query: 69 SMQGFPFYDKPMRIQYSKTDSDVISKIKGTF 99
++QGF F + M IQY+K+ SD I+K+ GTF
Sbjct: 80 ALQGFEFLGREMNIQYAKSKSDTIAKLDGTF 110
>gi|154278922|ref|XP_001540274.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150412217|gb|EDN07604.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 190
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 63/77 (81%)
Query: 23 DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRI 82
DL+ +LY +FS +G ++DIVA+KT KMRGQA V+F++I ++T A+R++QGF F+ K M+I
Sbjct: 32 DLRLALYTLFSTYGTVLDIVAMKTAKMRGQAHVVFRDIQASTQAMRALQGFEFFGKEMKI 91
Query: 83 QYSKTDSDVISKIKGTF 99
Y+K SD+I+K++GT+
Sbjct: 92 VYAKGSSDIIAKLRGTY 108
>gi|225554392|gb|EEH02691.1| RNA binding domain-containing protein [Ajellomyces capsulatus
G186AR]
Length = 190
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 63/77 (81%)
Query: 23 DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRI 82
DL+ +LY +FS +G ++DIVA+KT KMRGQA V+F++I ++T A+R++QGF F+ K M+I
Sbjct: 32 DLRLALYTLFSTYGTVLDIVAMKTAKMRGQAHVVFRDIQASTQAMRALQGFEFFGKEMKI 91
Query: 83 QYSKTDSDVISKIKGTF 99
Y+K SD+I+K++GT+
Sbjct: 92 VYAKGSSDIIAKLRGTY 108
>gi|402079726|gb|EJT74991.1| small nuclear ribonucleoprotein [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 198
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 71/224 (31%), Positives = 103/224 (45%), Gaps = 53/224 (23%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
VYV ++ LK+ L IFS +G I+DIVA L+ +GQAFV+F + SA A+
Sbjct: 10 VYVRNLEERVKPEALKEVLATIFSDYGTIVDIVAKTNLRAKGQAFVVFDDPDSAQRAVDE 69
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
+QGF +D+PM + ++T SD + G+ E R++ A ++ KK A E
Sbjct: 70 VQGFELFDRPMHLAIARTRSDATVRAAGSGEEFEAHKRRRVAEMD---------KKKALE 120
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLS 189
A Q +Q A A G P +
Sbjct: 121 AATAAQNKQ-------------------AAGARGGKP---------------------AA 140
Query: 190 MLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKI 233
+F +FPGF+EVRLVP R +AFVE+E E + AAK + G +
Sbjct: 141 GVFGRFPGFREVRLVPGRRGLAFVEYETEAGAIAAKESTAGMAL 184
>gi|310793820|gb|EFQ29281.1| RNA recognition domain-containing protein [Glomerella graminicola
M1.001]
Length = 203
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 68/91 (74%), Gaps = 5/91 (5%)
Query: 14 VYVTHISST-----DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALR 68
+YVT++ S DL+ LY +FS +G ++DIVA+KT+KMRGQA + F+++ +AT A+R
Sbjct: 29 LYVTNLPSNKIQKQDLRTELYLLFSTYGPVLDIVAMKTMKMRGQAHITFRDVQTATQAMR 88
Query: 69 SMQGFPFYDKPMRIQYSKTDSDVISKIKGTF 99
S++GF F +P+ IQY+K+ SD ++K+ GT+
Sbjct: 89 SLEGFEFLGRPLTIQYAKSKSDFVAKLDGTY 119
>gi|425868399|gb|AFY04330.1| sans fille, partial [Exeretonevra angustifrons]
Length = 93
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 43/57 (75%), Positives = 53/57 (92%)
Query: 51 GQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVR 107
G+ F+IFKEI SA+NALR+MQGFPFYDKPMRI YSKTDSD+I+++KGTF ERPKK++
Sbjct: 1 GRRFLIFKEIGSASNALRTMQGFPFYDKPMRIAYSKTDSDIIARMKGTFKERPKKIK 57
>gi|380746070|gb|AFE47968.1| sans fille, partial [Drosophila acanthoptera]
Length = 99
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 63/128 (49%), Positives = 79/128 (61%), Gaps = 29/128 (22%)
Query: 56 IFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVED 115
IFKEI SA+NALR+MQGFPFYDKPMRI YSK+DSD+++K+KGT+ ERPKKV+ +
Sbjct: 1 IFKEIGSASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTYKERPKKVKPPKPALGA 60
Query: 116 PAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILF 175
+ K KK+++ E + P +Q EQPPNQILF
Sbjct: 61 EEKKDKKKKQSSAENSN-----------------PNTQ------------TEQPPNQILF 91
Query: 176 LTNLPEET 183
LTNLPEET
Sbjct: 92 LTNLPEET 99
>gi|303313750|ref|XP_003066884.1| RNA recognition motif containing protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240106551|gb|EER24739.1| RNA recognition motif containing protein [Coccidioides posadasii
C735 delta SOWgp]
Length = 182
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 64/77 (83%)
Query: 23 DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRI 82
DL+ +LY +FS +G ++D+VA+KT KMRGQA V+F++I ++T A+R++QGF F+ K M+I
Sbjct: 30 DLRLALYTLFSTYGTVLDVVAMKTEKMRGQAHVVFRDIQTSTQAMRALQGFNFFGKEMKI 89
Query: 83 QYSKTDSDVISKIKGTF 99
Y+K +SD+I+K++GT+
Sbjct: 90 VYAKGNSDIIAKLRGTY 106
>gi|239611716|gb|EEQ88703.1| RNA binding domain-containing protein [Ajellomyces dermatitidis
ER-3]
Length = 190
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 62/77 (80%)
Query: 23 DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRI 82
DL+ +LY +FS +G ++D+VA+KT KMRGQA V+F++I ++T A+R++QGF F+ K M+I
Sbjct: 32 DLRLALYTLFSTYGTVLDVVAMKTAKMRGQAHVVFRDIQASTQAMRALQGFEFFGKEMKI 91
Query: 83 QYSKTDSDVISKIKGTF 99
Y K SD+I+K++GT+
Sbjct: 92 AYGKGSSDIIAKLRGTY 108
>gi|119185131|ref|XP_001243379.1| hypothetical protein CIMG_07275 [Coccidioides immitis RS]
gi|392866259|gb|EAS28872.2| RNA binding domain-containing protein [Coccidioides immitis RS]
Length = 182
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 64/77 (83%)
Query: 23 DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRI 82
DL+ +LY +FS +G ++D+VA+KT KMRGQA V+F++I ++T A+R++QGF F+ K M+I
Sbjct: 30 DLRLALYTLFSTYGTVLDVVAMKTEKMRGQAHVVFRDIQTSTQAMRALQGFNFFGKEMKI 89
Query: 83 QYSKTDSDVISKIKGTF 99
Y+K +SD+I+K++GT+
Sbjct: 90 VYAKGNSDIIAKLRGTY 106
>gi|358379777|gb|EHK17456.1| hypothetical protein TRIVIDRAFT_194675 [Trichoderma virens Gv29-8]
Length = 196
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 68/91 (74%), Gaps = 5/91 (5%)
Query: 14 VYVTHISST-----DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALR 68
+YVT++ S DL+ +LY +FS FG ++DIVALKT++MRGQA ++F++I +AT A+R
Sbjct: 29 LYVTNLPSAKIQKPDLRTALYMLFSTFGPVLDIVALKTMEMRGQAHIVFRDIQAATQAMR 88
Query: 69 SMQGFPFYDKPMRIQYSKTDSDVISKIKGTF 99
S+ G F +PM+IQY+K+ S ++K+ GTF
Sbjct: 89 SLDGQTFLGRPMKIQYAKSKSHFVAKLDGTF 119
>gi|261201324|ref|XP_002627062.1| RNA binding domain-containing protein [Ajellomyces dermatitidis
SLH14081]
gi|239592121|gb|EEQ74702.1| RNA binding domain-containing protein [Ajellomyces dermatitidis
SLH14081]
Length = 190
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 62/77 (80%)
Query: 23 DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRI 82
DL+ +LY +FS +G ++D+VA+KT KMRGQA V+F++I ++T A+R++QGF F+ K M+I
Sbjct: 32 DLRLALYTLFSTYGTVLDVVAMKTAKMRGQAHVVFRDIQASTQAMRALQGFEFFGKEMKI 91
Query: 83 QYSKTDSDVISKIKGTF 99
Y K SD+I+K++GT+
Sbjct: 92 AYGKGSSDIIAKLRGTY 108
>gi|340520969|gb|EGR51204.1| predicted protein [Trichoderma reesei QM6a]
Length = 172
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 68/91 (74%), Gaps = 5/91 (5%)
Query: 14 VYVTHISST-----DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALR 68
+Y+T++ S DL+ +LY +FS FG ++DIVALKT++MRGQA ++F++I +AT A+R
Sbjct: 29 IYITNLPSAKIQKQDLRTALYMLFSTFGPVLDIVALKTMEMRGQAHIVFRDIQAATQAMR 88
Query: 69 SMQGFPFYDKPMRIQYSKTDSDVISKIKGTF 99
+M G F +PM+IQY+K+ S ++K+ GTF
Sbjct: 89 TMDGQTFLGRPMKIQYAKSKSHFVAKLDGTF 119
>gi|380746078|gb|AFE47972.1| sans fille, partial [Drosophila hamatofila]
gi|380746080|gb|AFE47973.1| sans fille, partial [Drosophila hexastigma]
gi|380746084|gb|AFE47975.1| sans fille, partial [Drosophila koepferae]
gi|380746098|gb|AFE47982.1| sans fille, partial [Drosophila mulleri]
gi|380746104|gb|AFE47985.1| sans fille, partial [Drosophila nigrodumosa]
gi|380746108|gb|AFE47987.1| sans fille, partial [Drosophila parisiena]
gi|380746120|gb|AFE47993.1| sans fille, partial [Drosophila straubae]
gi|380746124|gb|AFE47995.1| sans fille, partial [Drosophila wheeleri]
gi|380746144|gb|AFE48005.1| sans fille, partial [Drosophila meridiana]
gi|380746156|gb|AFE48011.1| sans fille, partial [Drosophila arizonae]
gi|380746162|gb|AFE48014.1| sans fille, partial [Drosophila meridiana rioensis]
gi|380746166|gb|AFE48016.1| sans fille, partial [Drosophila mojavensis baja]
gi|380746168|gb|AFE48017.1| sans fille, partial [Drosophila martensis]
gi|380746172|gb|AFE48019.1| sans fille, partial [Drosophila huaylasi]
gi|380746174|gb|AFE48020.1| sans fille, partial [Drosophila meridionalis]
gi|380746182|gb|AFE48024.1| sans fille, partial [Drosophila spenceri]
gi|380746186|gb|AFE48026.1| sans fille, partial [Drosophila huichole]
Length = 99
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 64/128 (50%), Positives = 78/128 (60%), Gaps = 29/128 (22%)
Query: 56 IFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVED 115
IFKEI SA+NALR+MQGFPFYDKPMRI YSK+DSD+++K+KGT+ ERPKKV+
Sbjct: 1 IFKEIGSASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTYKERPKKVKPPKPVPGV 60
Query: 116 PAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILF 175
+ K KK+++ E A P +Q EQPPNQILF
Sbjct: 61 EEKKDKKKKQSSAENAN-----------------PNTQ------------TEQPPNQILF 91
Query: 176 LTNLPEET 183
LTNLPEET
Sbjct: 92 LTNLPEET 99
>gi|296005347|ref|XP_002809001.1| U1 small nuclear ribonucleoprotein a, putative [Plasmodium
falciparum 3D7]
gi|225631938|emb|CAX64282.1| U1 small nuclear ribonucleoprotein a, putative [Plasmodium
falciparum 3D7]
Length = 449
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 132/271 (48%), Gaps = 50/271 (18%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
+ + ++KK+L +F+ +G+I D++ +K+ +GQA+V++ + AT AL ++QG+ + K
Sbjct: 186 VKTDEMKKNLKDLFNTYGEIKDLIVMKSFWRKGQAWVVYDDKECATKALNALQGYVLFGK 245
Query: 79 PMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQ--ARLMQA 136
M+I +S SD+ +K GTF+ER K+ +K +E ++ K+K EQ ++
Sbjct: 246 IMQINFSHNKSDIHAKRDGTFVERSKEPKKPKKILE-----REQKQKEIFEQMHKNYLEM 300
Query: 137 QQQQMQALS----VQQPPV---SQPAPPAPMATA-------------------------- 163
Q+ L+ + +P + SQ +A A
Sbjct: 301 QKNNFNMLNGNKEINKPEIIDLSQMDKQTLIAKAQAKANEDKNKKNEELPNNNIFSSYYQ 360
Query: 164 --------GVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEF 215
P P +ILF+ N+ E + LF + GF E R++P R ++AFV+F
Sbjct: 361 MNNIAPVQNYPVVMPYKILFVENVVENVDTQAFNDLFKNYAGFVEARIIPQR-NVAFVDF 419
Query: 216 ENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
+E + A A+ +++ + +KIS+AK+
Sbjct: 420 TDETTATFAMKAVQNYELQGS-KLKISYAKR 449
>gi|440633480|gb|ELR03399.1| hypothetical protein GMDG_06136 [Geomyces destructans 20631-21]
Length = 213
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 69/91 (75%), Gaps = 5/91 (5%)
Query: 14 VYVTHISST-----DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALR 68
+Y+T++ S+ DL+ SLY +FS +G ++D+VA+KT+KMRGQA V+F++ +AT A+R
Sbjct: 25 LYITNLPSSKIQKYDLRLSLYTLFSTYGPVLDVVAMKTMKMRGQAHVVFRDAQTATQAMR 84
Query: 69 SMQGFPFYDKPMRIQYSKTDSDVISKIKGTF 99
+++GF F+ + IQY+K+ SD ISK+ GTF
Sbjct: 85 ALKGFEFFGYELDIQYAKSKSDTISKLDGTF 115
>gi|380746106|gb|AFE47986.1| sans fille, partial [Drosophila nigrospiracula]
Length = 99
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 64/128 (50%), Positives = 78/128 (60%), Gaps = 29/128 (22%)
Query: 56 IFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVED 115
IFKEI SA+NALR+MQGFPFYDKPMRI YSK+DSD+++K+KGT+ ERPKKV+
Sbjct: 1 IFKEIGSASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTYKERPKKVKPPKPVPGI 60
Query: 116 PAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILF 175
+ K KK+++ E A P +Q EQPPNQILF
Sbjct: 61 EEKKDKKKKQSSAENAN-----------------PNTQ------------TEQPPNQILF 91
Query: 176 LTNLPEET 183
LTNLPEET
Sbjct: 92 LTNLPEET 99
>gi|40950461|gb|AAR97864.1| sans fille [Drosophila parisiena]
gi|40950463|gb|AAR97865.1| sans fille [Drosophila parisiena]
gi|40950469|gb|AAR97868.1| sans fille [Drosophila huaylasi]
Length = 98
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 64/127 (50%), Positives = 77/127 (60%), Gaps = 29/127 (22%)
Query: 54 FVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPV 113
FVIFKEI SA+NALR+MQGFPFYDKPMRI YSKTDSD+++K+KGT+ ERPKKV+
Sbjct: 1 FVIFKEIGSASNALRTMQGFPFYDKPMRIAYSKTDSDIVAKLKGTYKERPKKVKPPKPVP 60
Query: 114 EDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQI 173
+ K KK+++ E A P +Q EQPPNQI
Sbjct: 61 GVEEKKDKKKKQSSAENAN-----------------PNTQ------------TEQPPNQI 91
Query: 174 LFLTNLP 180
LFLTNLP
Sbjct: 92 LFLTNLP 98
>gi|240273174|gb|EER36696.1| RNA binding domain-containing protein [Ajellomyces capsulatus H143]
gi|325089200|gb|EGC42510.1| RNA binding domain-containing protein [Ajellomyces capsulatus H88]
Length = 190
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 63/77 (81%)
Query: 23 DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRI 82
DL+ +LY +FS +G ++DIVA+KT KMRGQA V+F++I ++T A+R++QGF F+ K M+I
Sbjct: 32 DLRLALYTLFSTYGTVLDIVAMKTAKMRGQAHVVFRDIQASTQAMRALQGFEFFGKEMKI 91
Query: 83 QYSKTDSDVISKIKGTF 99
Y++ SD+I+K++GT+
Sbjct: 92 VYARGSSDIIAKLRGTY 108
>gi|380746142|gb|AFE48004.1| sans fille, partial [Drosophila ellisoni]
Length = 99
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/128 (50%), Positives = 77/128 (60%), Gaps = 29/128 (22%)
Query: 56 IFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVED 115
IFKEI SA+NALR+MQGFPFYDKPMRI YSK DSD+++K+KGT+ ERPKKV+
Sbjct: 1 IFKEIGSASNALRTMQGFPFYDKPMRIAYSKCDSDIVAKLKGTYKERPKKVKPPKPVPGV 60
Query: 116 PAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILF 175
+ K KK+++ E A P +Q EQPPNQILF
Sbjct: 61 EEKKDKKKKQSSTENAN-----------------PNTQ------------TEQPPNQILF 91
Query: 176 LTNLPEET 183
LTNLPEET
Sbjct: 92 LTNLPEET 99
>gi|346978290|gb|EGY21742.1| U2 small nuclear ribonucleoprotein B [Verticillium dahliae VdLs.17]
Length = 194
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/102 (45%), Positives = 71/102 (69%), Gaps = 6/102 (5%)
Query: 8 ICVTNFVYVTHISST-----DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIAS 62
I +YVT++ S DL+ LY +FS +G ++DIVA+KT+KMRGQA + +++I +
Sbjct: 23 IAPNQTLYVTNLPSAKIQKPDLRTELYLLFSTYGPVLDIVAMKTMKMRGQAHITYRDIQT 82
Query: 63 ATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPK 104
AT A+RS++GF F +P+RIQY+K+ SD I+++ F E PK
Sbjct: 83 ATQAMRSLEGFEFLGRPLRIQYAKSKSDFIARLDPNF-ELPK 123
>gi|380746136|gb|AFE48001.1| sans fille, partial [Drosophila navojoa]
Length = 99
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/128 (50%), Positives = 77/128 (60%), Gaps = 29/128 (22%)
Query: 56 IFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVED 115
IFKEI SA+NALR+MQGFPFYDKPMRI YSK+DSD+++K+KGT+ ERPKKV+
Sbjct: 1 IFKEIGSASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTYKERPKKVKPPKPVPGV 60
Query: 116 PAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILF 175
+ K KK+ + E A P +Q EQPPNQILF
Sbjct: 61 EEKKDKKKKQTSAENAN-----------------PNTQ------------TEQPPNQILF 91
Query: 176 LTNLPEET 183
LTNLPEET
Sbjct: 92 LTNLPEET 99
>gi|407921847|gb|EKG14985.1| protein of unknown function DUF2235 [Macrophomina phaseolina MS6]
Length = 198
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/91 (49%), Positives = 67/91 (73%), Gaps = 1/91 (1%)
Query: 23 DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRI 82
+LK+ LY IFS +G ++DI+ LKT+KMRGQA ++F++I AT A+RS+QGF F+ K M I
Sbjct: 39 NLKRQLYLIFSTYGSVLDIITLKTIKMRGQAHIVFQDIPKATQAMRSLQGFEFFGKKMSI 98
Query: 83 QYSKTDSDVISKIKGTFMERPKKVRKQPAPV 113
QY+K+ S+ ++K+ GTF +P+ PA V
Sbjct: 99 QYAKSKSNYVAKLDGTF-NQPQVAHPGPATV 128
>gi|330905989|ref|XP_003295311.1| hypothetical protein PTT_00381 [Pyrenophora teres f. teres 0-1]
gi|311333503|gb|EFQ96597.1| hypothetical protein PTT_00381 [Pyrenophora teres f. teres 0-1]
Length = 198
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 62/76 (81%)
Query: 24 LKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83
LK++LY +F+ +G I+DIVALKT+KMRGQA V+F+++ S+T A+R++Q F F+ K M+I
Sbjct: 54 LKRNLYMLFATYGVILDIVALKTMKMRGQAHVVFRDVDSSTQAMRALQAFTFFGKDMQIS 113
Query: 84 YSKTDSDVISKIKGTF 99
Y+KT SD I+K+ GT+
Sbjct: 114 YAKTKSDTIAKLDGTY 129
>gi|258564638|ref|XP_002583064.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237908571|gb|EEP82972.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 183
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 74/100 (74%), Gaps = 5/100 (5%)
Query: 5 LAHICVTN-FVYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKE 59
LA++ V N +Y ++ + DL+ +LY +FS +G ++D+VA+KT KMRGQA ++F++
Sbjct: 7 LANVGVPNQTLYCSNLPDKVKKPDLRLALYTLFSTYGVVLDVVAMKTEKMRGQAHIVFRD 66
Query: 60 IASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTF 99
I ++T A+R++QGF F+ K +RI Y+K SD+I+K++GT+
Sbjct: 67 IQTSTQAMRALQGFNFFGKEIRIVYAKGSSDIIAKLRGTY 106
>gi|121709896|ref|XP_001272564.1| RNA binding domain protein [Aspergillus clavatus NRRL 1]
gi|119400714|gb|EAW11138.1| RNA binding domain protein [Aspergillus clavatus NRRL 1]
Length = 194
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 63/77 (81%)
Query: 23 DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRI 82
DL+ SLY +FS +G ++D+VA+KT KMRGQA ++FK++ ++T A+R++QGF F+ K M+I
Sbjct: 39 DLRLSLYTLFSTYGTVLDVVAMKTEKMRGQAHIVFKDVQASTQAMRALQGFDFFGKEMKI 98
Query: 83 QYSKTDSDVISKIKGTF 99
Y+K SDVI++++GT+
Sbjct: 99 VYAKGSSDVIARLRGTY 115
>gi|380746072|gb|AFE47969.1| sans fille, partial [Drosophila anceps]
gi|380746082|gb|AFE47974.1| sans fille, partial [Drosophila hydei]
gi|380746092|gb|AFE47979.1| sans fille, partial [Drosophila mettleri]
gi|380746094|gb|AFE47980.1| sans fille, partial [Drosophila micromettleri]
gi|380746100|gb|AFE47983.1| sans fille, partial [Drosophila neorepleta]
gi|380746110|gb|AFE47988.1| sans fille, partial [Drosophila peninsularis]
gi|380746130|gb|AFE47998.1| sans fille, partial [Drosophila pavani]
gi|380746158|gb|AFE48012.1| sans fille, partial [Drosophila limensis]
gi|380746164|gb|AFE48015.1| sans fille, partial [Drosophila eohydei]
gi|380746170|gb|AFE48018.1| sans fille, partial [Drosophila canapalpa]
Length = 99
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/128 (49%), Positives = 78/128 (60%), Gaps = 29/128 (22%)
Query: 56 IFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVED 115
IFKEI SA+NALR+MQGFPFYDKPMRI YSK+DSD+++K+KGT+ ERPKKV+
Sbjct: 1 IFKEIGSASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTYKERPKKVKPPKPVPGV 60
Query: 116 PAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILF 175
+ K KK+++ E + P +Q EQPPNQILF
Sbjct: 61 EEKKDKKKKQSSAENSN-----------------PNTQ------------TEQPPNQILF 91
Query: 176 LTNLPEET 183
LTNLPEET
Sbjct: 92 LTNLPEET 99
>gi|393215680|gb|EJD01171.1| RNA-binding domain-containing protein [Fomitiporia mediterranea
MF3/22]
Length = 268
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/256 (28%), Positives = 128/256 (50%), Gaps = 39/256 (15%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
I+ +LKK L++ F+ +G+++DI+A+K+ +M+GQAFV+F ++ AT A+R+ +G FYDK
Sbjct: 20 INKDELKKQLFSFFTTYGRVIDIIAIKSARMKGQAFVVFADLPEATTAMRACEGMIFYDK 79
Query: 79 PMRIQYSKTDSDVISK-----------------IKGT----FMERPKKVRKQPAPVEDPA 117
P+ I Y+K+ S + + + GT +E+ + ++ + A
Sbjct: 80 PLHIHYAKSKSYAVLRREDPDFIPPNPVGQSRLLNGTSASNIVEKRSREEEEEEDLASGA 139
Query: 118 EAKKSKKKAAKE--QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILF 175
K +K E M+ + + QQ +Q PP V EQP ++L
Sbjct: 140 RQPKREKPNGDEDGDGEEMELEDENDSGAQEQQQQAAQAVPP-------VLEQPSARLL- 191
Query: 176 LTNLPEETSEMMLSMLFNQFPGFKEVRL----VPN----RHDIAFVEFENEMQSAAAKLA 227
TNLP E ++ +L +LF Q+ GF + PN + +A V +++ ++ AK A
Sbjct: 192 CTNLPMEVTDDVLGVLFQQYQGFISTHVAQSPTPNAAGQKVKMAQVIYDSAELASVAKEA 251
Query: 228 LHGFKITPTHAMKISF 243
L GF + M +++
Sbjct: 252 LDGFTLKKGWKMSVAY 267
>gi|115400914|ref|XP_001216045.1| hypothetical protein ATEG_07424 [Aspergillus terreus NIH2624]
gi|114189986|gb|EAU31686.1| hypothetical protein ATEG_07424 [Aspergillus terreus NIH2624]
Length = 188
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 63/77 (81%)
Query: 23 DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRI 82
DL+ SLY +FS +G ++D+VA+KT KMRGQA ++FK++ ++T A+R++QGF F+ K M+I
Sbjct: 37 DLRLSLYTLFSTYGTVLDVVAMKTEKMRGQAHIVFKDVQASTQAMRALQGFEFFGKQMKI 96
Query: 83 QYSKTDSDVISKIKGTF 99
Y+K SDVI++++GT+
Sbjct: 97 VYAKGTSDVIARLRGTY 113
>gi|40950383|gb|AAR97825.1| sans fille [Drosophila mojavensis]
gi|40950385|gb|AAR97826.1| sans fille [Drosophila mojavensis]
gi|40950387|gb|AAR97827.1| sans fille [Drosophila mojavensis]
gi|40950389|gb|AAR97828.1| sans fille [Drosophila mojavensis]
gi|40950391|gb|AAR97829.1| sans fille [Drosophila mojavensis]
gi|40950393|gb|AAR97830.1| sans fille [Drosophila mojavensis]
gi|40950395|gb|AAR97831.1| sans fille [Drosophila mojavensis]
gi|40950397|gb|AAR97832.1| sans fille [Drosophila mojavensis]
gi|40950399|gb|AAR97833.1| sans fille [Drosophila mojavensis]
gi|40950401|gb|AAR97834.1| sans fille [Drosophila mojavensis]
gi|40950403|gb|AAR97835.1| sans fille [Drosophila mojavensis]
gi|40950405|gb|AAR97836.1| sans fille [Drosophila mojavensis]
gi|40950407|gb|AAR97837.1| sans fille [Drosophila mojavensis]
gi|40950409|gb|AAR97838.1| sans fille [Drosophila mojavensis]
gi|40950411|gb|AAR97839.1| sans fille [Drosophila mojavensis]
gi|40950413|gb|AAR97840.1| sans fille [Drosophila mojavensis]
gi|40950415|gb|AAR97841.1| sans fille [Drosophila mojavensis]
gi|40950417|gb|AAR97842.1| sans fille [Drosophila mojavensis]
gi|40950419|gb|AAR97843.1| sans fille [Drosophila mojavensis]
gi|40950421|gb|AAR97844.1| sans fille [Drosophila mojavensis]
gi|40950423|gb|AAR97845.1| sans fille [Drosophila mojavensis]
gi|40950425|gb|AAR97846.1| sans fille [Drosophila mojavensis]
gi|40950427|gb|AAR97847.1| sans fille [Drosophila mojavensis]
gi|40950429|gb|AAR97848.1| sans fille [Drosophila mojavensis]
gi|40950431|gb|AAR97849.1| sans fille [Drosophila mojavensis]
gi|40950433|gb|AAR97850.1| sans fille [Drosophila mojavensis]
gi|40950449|gb|AAR97858.1| sans fille [Drosophila arizonae]
gi|40950453|gb|AAR97860.1| sans fille [Drosophila arizonae]
gi|40950455|gb|AAR97861.1| sans fille [Drosophila arizonae]
gi|40950457|gb|AAR97862.1| sans fille [Drosophila mulleri]
gi|40950459|gb|AAR97863.1| sans fille [Drosophila mulleri]
gi|40950465|gb|AAR97866.1| sans fille [Drosophila straubae]
gi|40950467|gb|AAR97867.1| sans fille [Drosophila mayaguana]
Length = 98
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/127 (49%), Positives = 77/127 (60%), Gaps = 29/127 (22%)
Query: 54 FVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPV 113
FVIFKEI SA+NALR+MQGFPFYDKPMRI YSK+DSD+++K+KGT+ ERPKKV+
Sbjct: 1 FVIFKEIGSASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTYKERPKKVKPPKPVP 60
Query: 114 EDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQI 173
+ K KK+++ E A P +Q EQPPNQI
Sbjct: 61 GVEEKKDKKKKQSSAENAN-----------------PNTQ------------TEQPPNQI 91
Query: 174 LFLTNLP 180
LFLTNLP
Sbjct: 92 LFLTNLP 98
>gi|443896718|dbj|GAC74062.1| spliceosomal protein snRNP-U1A/U2B [Pseudozyma antarctica T-34]
Length = 581
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 113/224 (50%), Gaps = 12/224 (5%)
Query: 24 LKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83
+K +L +FS + ++ + + ++MRGQAFV + +A A R FP Y K M+I
Sbjct: 97 MKATLVNLFSNYANVLSVTSHTNVRMRGQAFVALDSVEAADKARREAHLFPLYGKAMKIS 156
Query: 84 YSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQ-QQQMQ 142
++K+ SD + E + K+ + E + KK A+ L + + +++++
Sbjct: 157 FAKSKSDAV-----VAQETAESGGKESDDFQKHKEQRLEHKKMARRGNVLRRRELEKKIR 211
Query: 143 ALSVQQPPVSQP----APPAPMATAGVPEQ--PPNQILFLTNLPEETSEMMLSMLFNQFP 196
A +++P A A +P++ PPN++LFL +P+ + L LF+ +
Sbjct: 212 AKRAAAGEIAEPEKASGAAAKRAQHDMPDEYLPPNKMLFLQKIPDGVGKGELESLFSAYS 271
Query: 197 GFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMK 240
G+ +V+ +P + DIAFVEF + S A+ AL+G+ +K
Sbjct: 272 GYVDVQTIPGKADIAFVEFSDIPSSVTARGALNGYNFGAGDKLK 315
>gi|40950435|gb|AAR97851.1| sans fille [Drosophila navojoa]
gi|40950437|gb|AAR97852.1| sans fille [Drosophila navojoa]
gi|40950439|gb|AAR97853.1| sans fille [Drosophila navojoa]
gi|40950441|gb|AAR97854.1| sans fille [Drosophila navojoa]
gi|40950443|gb|AAR97855.1| sans fille [Drosophila navojoa]
gi|40950445|gb|AAR97856.1| sans fille [Drosophila navojoa]
Length = 98
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/127 (49%), Positives = 76/127 (59%), Gaps = 29/127 (22%)
Query: 54 FVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPV 113
FVIFKEI SA+NALR+MQGFPFYDKPMRI YSK+DSD+++K+KGT+ ERPKKV+
Sbjct: 1 FVIFKEIGSASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTYKERPKKVKPPKPVP 60
Query: 114 EDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQI 173
+ K KK+ + E A P +Q EQPPNQI
Sbjct: 61 GVEEKKDKKKKQTSAENAN-----------------PNTQ------------TEQPPNQI 91
Query: 174 LFLTNLP 180
LFLTNLP
Sbjct: 92 LFLTNLP 98
>gi|317037413|ref|XP_001399113.2| RNA binding domain protein [Aspergillus niger CBS 513.88]
Length = 196
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 63/77 (81%)
Query: 23 DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRI 82
DL+ SLY +FS +G ++D+VA+KT KMRGQA ++FK++ ++T A+R++QGF F+ K M+I
Sbjct: 40 DLRLSLYMLFSTYGTVLDVVAMKTQKMRGQAHIVFKDVQASTQAMRALQGFEFFGKQMKI 99
Query: 83 QYSKTDSDVISKIKGTF 99
Y+K SDVI++++GT+
Sbjct: 100 VYAKGPSDVIARLRGTY 116
>gi|358373502|dbj|GAA90100.1| RNA binding domain protein [Aspergillus kawachii IFO 4308]
Length = 196
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 63/77 (81%)
Query: 23 DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRI 82
DL+ SLY +FS +G ++D+VA+KT KMRGQA ++FK++ ++T A+R++QGF F+ K M+I
Sbjct: 40 DLRLSLYMLFSTYGTVLDVVAMKTQKMRGQAHIVFKDVQASTQAMRALQGFEFFGKQMKI 99
Query: 83 QYSKTDSDVISKIKGTF 99
Y+K SDVI++++GT+
Sbjct: 100 VYAKGPSDVIARLRGTY 116
>gi|167380749|ref|XP_001735437.1| U1 small nuclear ribonucleoprotein A [Entamoeba dispar SAW760]
gi|165902588|gb|EDR28371.1| U1 small nuclear ribonucleoprotein A, putative [Entamoeba dispar
SAW760]
Length = 233
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 114/222 (51%), Gaps = 27/222 (12%)
Query: 8 ICVTNFVYVTHISST----DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASA 63
I V+ +Y+ ++ + ++ SL +F +G ++ + K+LKMRGQAFVI+ SA
Sbjct: 17 IPVSCTLYINNLDQSIKPNRIRDSLNTVFGAYGNVLQVCVRKSLKMRGQAFVIYDTKESA 76
Query: 64 TNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSK 123
A+ S+Q +D+PM I YSK +SD+ K +G + R KK ++ +E E
Sbjct: 77 QFAMESLQNHELFDRPMHINYSKIESDITVKNQGKEITREKKPKQIKVQIEKTLE----- 131
Query: 124 KKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEET 183
KE+ + Q +++ + ++ PP S P + + LF+ ++P+
Sbjct: 132 ---HKEEVPIKQDIEKK-EPNEIKLPPNS-------------PTRHTSNRLFIKSVPQNV 174
Query: 184 SEMMLSMLFNQFPGFKEVR-LVPNRHDIAFVEFENEMQSAAA 224
S+ L LF Q GF EVR +V + +AF+EF++E S A
Sbjct: 175 SKQRLEELFKQQEGFVEVRYIVIKGNAVAFIEFKDETSSEHA 216
>gi|134084710|emb|CAK43367.1| unnamed protein product [Aspergillus niger]
gi|350630864|gb|EHA19236.1| hypothetical protein ASPNIDRAFT_126281 [Aspergillus niger ATCC
1015]
Length = 177
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 63/77 (81%)
Query: 23 DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRI 82
DL+ SLY +FS +G ++D+VA+KT KMRGQA ++FK++ ++T A+R++QGF F+ K M+I
Sbjct: 21 DLRLSLYMLFSTYGTVLDVVAMKTQKMRGQAHIVFKDVQASTQAMRALQGFEFFGKQMKI 80
Query: 83 QYSKTDSDVISKIKGTF 99
Y+K SDVI++++GT+
Sbjct: 81 VYAKGPSDVIARLRGTY 97
>gi|259016061|gb|ACV89312.1| sans fille [Panorpa sp. BMW-2009]
Length = 52
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 45/50 (90%), Positives = 48/50 (96%)
Query: 56 IFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKK 105
IFKEI S+TNALRSMQGFPFYDKPMRIQYSKTDSDVI+K+KGTF ERPKK
Sbjct: 1 IFKEIPSSTNALRSMQGFPFYDKPMRIQYSKTDSDVIAKMKGTFQERPKK 50
>gi|225680763|gb|EEH19047.1| U1 small nuclear ribonucleoprotein A [Paracoccidioides brasiliensis
Pb03]
Length = 197
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 62/77 (80%)
Query: 23 DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRI 82
DL+ +LY +FS +G ++D+VA+KT KMRGQA V+F++I ++T A+R++QGF F+ K M+I
Sbjct: 32 DLRLALYTLFSTYGTVLDVVAMKTAKMRGQAHVVFRDIQASTQAMRALQGFEFFGKEMKI 91
Query: 83 QYSKTDSDVISKIKGTF 99
Y K S++I+K++GT+
Sbjct: 92 VYGKGSSNIIAKLRGTY 108
>gi|320588577|gb|EFX01045.1| RNA-binding domain containing protein [Grosmannia clavigera kw1407]
Length = 200
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 69/97 (71%), Gaps = 5/97 (5%)
Query: 8 ICVTNFVYVTHISST-----DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIAS 62
I +YV ++ S DL+ +LY +FS +G ++D+VALKT+KMRGQA ++F++I +
Sbjct: 24 IAPNQTLYVRNLPSAKIKKEDLRMALYLLFSTYGPVLDVVALKTMKMRGQAHIVFRDIQA 83
Query: 63 ATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTF 99
AT A RS+ GF F+ + M++ Y+K+ S+VI+++ GTF
Sbjct: 84 ATQAARSLDGFSFFGQDMKVTYAKSKSNVIARLDGTF 120
>gi|397638775|gb|EJK73209.1| hypothetical protein THAOC_05179 [Thalassiosira oceanica]
Length = 193
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 93/183 (50%), Gaps = 38/183 (20%)
Query: 24 LKKSLYAIFSQFGQIMDIVALKTLK-----MRGQAFVIFKEIASATNALRSMQGFPFYDK 78
LK+SL ++FS+ G+++D++ L+ +RGQA+VIF ++AT AL + +GF F+ +
Sbjct: 34 LKRSLLSLFSRHGKVLDVICLRGNGSGGKCLRGQAWVIFDSQSAATQALTAERGFVFFGR 93
Query: 79 PMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQ 138
P+ + YS SD I+K GT+ ++ K+ R +E+ E AK+ AR ++ Q
Sbjct: 94 PLMVNYSAETSDRIAKRNGTYGQKTKEKRAAKRKMEETEEG------CAKKSARTAESNQ 147
Query: 139 QQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGF 198
P+ +L LP+E + +ML MLF Q+ G+
Sbjct: 148 ---------------------------GSDTPSPVLLAKELPDEVTSVMLEMLFRQYGGY 180
Query: 199 KEV 201
KEV
Sbjct: 181 KEV 183
>gi|295672938|ref|XP_002797015.1| RNA binding domain-containing protein [Paracoccidioides sp.
'lutzii' Pb01]
gi|226282387|gb|EEH37953.1| RNA binding domain-containing protein [Paracoccidioides sp.
'lutzii' Pb01]
Length = 197
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 62/77 (80%)
Query: 23 DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRI 82
DL+ +LY +FS +G ++D+VA+KT KMRGQA V+F++I ++T A+R++QGF F+ K M+I
Sbjct: 32 DLRLALYTLFSTYGTVLDVVAMKTAKMRGQAHVVFRDIQASTQAMRALQGFEFFGKEMKI 91
Query: 83 QYSKTDSDVISKIKGTF 99
Y K S++I+K++GT+
Sbjct: 92 VYGKGSSNIIAKLRGTY 108
>gi|315045578|ref|XP_003172164.1| U1 small nuclear ribonucleoprotein A [Arthroderma gypseum CBS
118893]
gi|311342550|gb|EFR01753.1| U1 small nuclear ribonucleoprotein A [Arthroderma gypseum CBS
118893]
Length = 186
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 68/90 (75%), Gaps = 4/90 (4%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y T+ I DL+ +LY +FS +G ++D+VA+++ MRGQA ++F+++ ++T A+R+
Sbjct: 17 LYCTNLPDKIKKPDLRTALYTLFSTYGAVLDVVAMRSKGMRGQAHIVFRDVQTSTQAMRA 76
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTF 99
+QGF F+ K M+I Y+K +SD+I+K++GTF
Sbjct: 77 LQGFDFFGKEMKIVYAKGNSDIIAKLRGTF 106
>gi|358060915|dbj|GAA93431.1| hypothetical protein E5Q_00072 [Mixia osmundae IAM 14324]
Length = 298
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 75/266 (28%), Positives = 119/266 (44%), Gaps = 53/266 (19%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
I DLK+ L+++FS G ++D+VALK KMRGQAFV+++ + SAT A R G F +
Sbjct: 26 IKKEDLKRLLHSLFSVHGHLLDVVALKGPKMRGQAFVVYESLTSATTARRREDGAIFCGQ 85
Query: 79 PMRIQYSKTDS----------DVISKIK---------GTFMERPKKVRKQPAPVEDPAEA 119
PMRI Y+KT S DV+ +IK T +R K+ A +
Sbjct: 86 PMRISYAKTKSHATIERESGKDVLYQIKMGIIKSQEEATANKRKGKLVVSDAQNREETTR 145
Query: 120 KKSKKKAAKEQARLMQA----------QQQQMQALSVQQPPVSQPAPPAPMATAGVPE-- 167
K+ + + A ++ R +A + + +P P +A G E
Sbjct: 146 KRQRDEEAGKKKRAGRAGVEGEEDEEEEDEDDDGDDETEPSAGLAKKPRTVADGGEEEMQ 205
Query: 168 -------------------QPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRH 208
+P + IL + LP+ET+E L +LF Q+ G R+V
Sbjct: 206 EDSDKEEADVAAANGQPAQRPSSHILAVHGLPQETTEDSLRLLFQQYAGLTGARIVRG-- 263
Query: 209 DIAFVEFENEMQSAAAKLALHGFKIT 234
I + +E+ +A A AL+ F+++
Sbjct: 264 -IGQIVYESPAHAAVALEALNQFQVS 288
>gi|358400597|gb|EHK49923.1| hypothetical protein TRIATDRAFT_297311 [Trichoderma atroviride IMI
206040]
Length = 198
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 67/91 (73%), Gaps = 5/91 (5%)
Query: 14 VYVTHISS-----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALR 68
+YVT++ S DL+ +LY +FS FG ++DIVALKT++MRGQA ++F++I +AT A+R
Sbjct: 31 LYVTNLPSGKIQKADLRTALYMLFSTFGPVLDIVALKTMEMRGQAHIVFRDIQAATQAMR 90
Query: 69 SMQGFPFYDKPMRIQYSKTDSDVISKIKGTF 99
S+ G F + M+IQY+K+ S ++K+ GTF
Sbjct: 91 SLDGQSFLGRTMKIQYAKSKSHFVAKLDGTF 121
>gi|408396032|gb|EKJ75200.1| hypothetical protein FPSE_04591 [Fusarium pseudograminearum CS3096]
Length = 202
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 41/91 (45%), Positives = 69/91 (75%), Gaps = 5/91 (5%)
Query: 14 VYVTHISST-----DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALR 68
+YVT++ S+ DL+ +LY +FS +G ++D+VALKT+KMRGQA + F+++ SAT A+R
Sbjct: 30 LYVTNLPSSKIQKDDLRTALYLLFSTYGPVLDVVALKTMKMRGQAHITFRDVQSATQAMR 89
Query: 69 SMQGFPFYDKPMRIQYSKTDSDVISKIKGTF 99
S++G F + ++IQY+K+ S+ ++K+ GTF
Sbjct: 90 SLEGQSFLGRDLKIQYAKSKSNFVAKLDGTF 120
>gi|327304471|ref|XP_003236927.1| RNA binding domain-containing protein [Trichophyton rubrum CBS
118892]
gi|326459925|gb|EGD85378.1| RNA binding domain-containing protein [Trichophyton rubrum CBS
118892]
Length = 186
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 73/103 (70%), Gaps = 5/103 (4%)
Query: 2 NIILAHICVTN-FVYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVI 56
N A++ N +Y T+ I DL+ +LY +FS +G ++D+VA+++ MRGQA ++
Sbjct: 4 NTAPANVGAPNQTLYCTNLPDKIKKPDLRTALYTLFSTYGAVLDVVAMRSKGMRGQAHIV 63
Query: 57 FKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTF 99
F+++ ++T A+R++QGF F+ K M+I Y+K +SD+I+K++GT+
Sbjct: 64 FRDVQTSTQAMRALQGFDFFGKEMKIVYAKGNSDIIAKLRGTY 106
>gi|346320333|gb|EGX89934.1| Nucleotide-binding, alpha-beta plait [Cordyceps militaris CM01]
Length = 201
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 84/162 (51%), Gaps = 39/162 (24%)
Query: 14 VYVTHISST-----DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALR 68
+Y+T++ S DL+ +LY +FS FG ++DIVALKT+ MRGQA ++F++I +AT A+R
Sbjct: 28 IYITNLPSAKIQKDDLRTALYMLFSTFGPVLDIVALKTMSMRGQAHIVFRDIQAATQAMR 87
Query: 69 SMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAK 128
++ G F + M+IQY+K+ S +SKI GT +K AA
Sbjct: 88 TLDGEEFLGRAMKIQYAKSKSHFVSKIDGTL-------------------TLPTKGAAAP 128
Query: 129 EQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPP 170
EQ L Q+ APPA AT P +PP
Sbjct: 129 EQTELQQSIFN---------------APPAGTATTETPAKPP 155
>gi|40950451|gb|AAR97859.1| sans fille [Drosophila arizonae]
Length = 97
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/126 (49%), Positives = 76/126 (60%), Gaps = 29/126 (23%)
Query: 55 VIFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVE 114
VIFKEI SA+NALR+MQGFPFYDKPMRI YSK+DSD+++K+KGT+ ERPKKV+
Sbjct: 1 VIFKEIGSASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTYKERPKKVKPPKPVPG 60
Query: 115 DPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQIL 174
+ K KK+++ E A P +Q EQPPNQIL
Sbjct: 61 VEEKKDKKKKQSSAENAN-----------------PNTQ------------TEQPPNQIL 91
Query: 175 FLTNLP 180
FLTNLP
Sbjct: 92 FLTNLP 97
>gi|326484964|gb|EGE08974.1| U1 small nuclear ribonucleoprotein A [Trichophyton equinum CBS
127.97]
Length = 186
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 68/90 (75%), Gaps = 4/90 (4%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y T+ I DL+ +LY +FS +G ++D+VA+++ MRGQA ++F+++ ++T A+R+
Sbjct: 17 LYCTNLPDKIKKPDLRTALYTLFSTYGAVLDVVAMRSKGMRGQAHIVFRDVQTSTQAMRA 76
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTF 99
+QGF F+ K M+I Y+K +SD+I+K++GT+
Sbjct: 77 LQGFDFFGKEMKIVYAKGNSDIIAKLRGTY 106
>gi|326472762|gb|EGD96771.1| U1 small nuclear ribonucleoprotein A [Trichophyton tonsurans CBS
112818]
Length = 186
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 68/90 (75%), Gaps = 4/90 (4%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y T+ I DL+ +LY +FS +G ++D+VA+++ MRGQA ++F+++ ++T A+R+
Sbjct: 17 LYCTNLPDKIKKPDLRTALYTLFSTYGAVLDVVAMRSKGMRGQAHIVFRDVQTSTQAMRA 76
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTF 99
+QGF F+ K M+I Y+K +SD+I+K++GT+
Sbjct: 77 LQGFDFFGKEMKIVYAKGNSDIIAKLRGTY 106
>gi|403221977|dbj|BAM40109.1| U1/2 small nuclear ribonucleoprotein [Theileria orientalis strain
Shintoku]
Length = 206
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 71/241 (29%), Positives = 114/241 (47%), Gaps = 51/241 (21%)
Query: 9 CVTNFVYV----THISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASAT 64
C T +VY HI LKK +Y +F +G I+DIVA +T +RGQAFV+F+EI+SAT
Sbjct: 13 CQTLYVYNLNDQVHIDV--LKKLVYELFIPYGIIVDIVARRTKNLRGQAFVVFREISSAT 70
Query: 65 NALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKK 124
AL+ + G +K ++I+Y+K R K K + +K K
Sbjct: 71 AALKGLNGRKVLNKVLKIEYAKN--------------RSYKAMKPSDYYKISKSSKSKSK 116
Query: 125 KAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETS 184
A + + ++ L V+ P +++ +++
Sbjct: 117 IAPEYMDEVRTDGNEESHTLFVENIP--------------------------SDMSKDSL 150
Query: 185 EMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFA 244
E+ LF Q+PGFK R + R+ +AFV++ Q+ A L GF+++ THA++IS A
Sbjct: 151 EL----LFRQYPGFKNCRFIEGRY-VAFVDYSMATQAEIALEGLQGFRVSHTHALQISLA 205
Query: 245 K 245
K
Sbjct: 206 K 206
>gi|380746140|gb|AFE48003.1| sans fille, partial [Drosophila virilis]
Length = 99
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/128 (48%), Positives = 76/128 (59%), Gaps = 29/128 (22%)
Query: 56 IFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVED 115
IFKEI SA+NALR+MQGFPFYDKPMRI YSK+DSD+++K+KGT+ ERPKKV
Sbjct: 1 IFKEIGSASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTYKERPKKV--------- 51
Query: 116 PAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILF 175
A+E+ + Q+ + P +Q EQPPNQILF
Sbjct: 52 ---KPPKPAPGAEEKKDKKKK-----QSSTENSNPNTQ------------TEQPPNQILF 91
Query: 176 LTNLPEET 183
LTNLPEET
Sbjct: 92 LTNLPEET 99
>gi|302501506|ref|XP_003012745.1| hypothetical protein ARB_00996 [Arthroderma benhamiae CBS 112371]
gi|291176305|gb|EFE32105.1| hypothetical protein ARB_00996 [Arthroderma benhamiae CBS 112371]
Length = 248
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 68/90 (75%), Gaps = 4/90 (4%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y T+ I DL+ +LY +FS +G ++D+VA+++ MRGQA ++F+++ ++T A+R+
Sbjct: 79 LYCTNLPDKIKKPDLRTALYTLFSTYGAVLDVVAMRSKGMRGQAHIVFRDVQTSTQAMRA 138
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTF 99
+QGF F+ K M+I Y+K +SD+I+K++GT+
Sbjct: 139 LQGFDFFGKEMKIVYAKGNSDIIAKLRGTY 168
>gi|452980615|gb|EME80376.1| hypothetical protein MYCFIDRAFT_31866 [Pseudocercospora fijiensis
CIRAD86]
Length = 200
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/90 (46%), Positives = 65/90 (72%), Gaps = 2/90 (2%)
Query: 23 DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRI 82
DLK++LY + S +G ++DI ALKT KMRGQA V+F+++ SAT A+R QG+ F+ + M+I
Sbjct: 36 DLKRNLYMLLSTYGPVLDITALKTPKMRGQAHVLFRDVNSATQAMRHCQGYEFFGREMKI 95
Query: 83 QYSKTDSDVISKIKGTFMERPKKVRKQPAP 112
Y+K+ S+ ++K+ GTF E ++ K AP
Sbjct: 96 SYAKSRSNTLAKLTGTFHE--EQASKAAAP 123
>gi|327348269|gb|EGE77126.1| RNA binding domain-containing protein [Ajellomyces dermatitidis
ATCC 18188]
Length = 196
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 62/83 (74%), Gaps = 6/83 (7%)
Query: 23 DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMR- 81
DL+ +LY +FS +G ++D+VA+KT KMRGQA V+F++I ++T A+R++QGF F+ K MR
Sbjct: 32 DLRLALYTLFSTYGTVLDVVAMKTAKMRGQAHVVFRDIQASTQAMRALQGFEFFGKEMRH 91
Query: 82 -----IQYSKTDSDVISKIKGTF 99
I Y K SD+I+K++GT+
Sbjct: 92 WDEQKIAYGKGSSDIIAKLRGTY 114
>gi|345567447|gb|EGX50379.1| hypothetical protein AOL_s00076g143 [Arthrobotrys oligospora ATCC
24927]
Length = 195
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 66/90 (73%), Gaps = 4/90 (4%)
Query: 14 VYVTHISST----DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+++++ DLK +LY +FS +G ++D++ALKT KMRGQA V F++IA A++A+R
Sbjct: 28 LYISNLNDKIHKPDLKIALYTLFSTYGVVLDVIALKTAKMRGQAHVAFRDIAGASSAMRG 87
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTF 99
QG + K M+IQY+++ SD I+K+ GT+
Sbjct: 88 CQGMVIFGKEMKIQYARSKSDTIAKLDGTY 117
>gi|425868429|gb|AFY04344.1| sans fille, partial [Glossina morsitans]
Length = 87
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/50 (84%), Positives = 48/50 (96%)
Query: 58 KEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVR 107
KEIASA+NALR+MQGFPFYDKPMRI Y+KTDSD+++KIKGTF ERPKKVR
Sbjct: 1 KEIASASNALRTMQGFPFYDKPMRIAYAKTDSDMVAKIKGTFKERPKKVR 50
>gi|302926259|ref|XP_003054259.1| hypothetical protein NECHADRAFT_90073 [Nectria haematococca mpVI
77-13-4]
gi|256735200|gb|EEU48546.1| hypothetical protein NECHADRAFT_90073 [Nectria haematococca mpVI
77-13-4]
Length = 197
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 69/91 (75%), Gaps = 5/91 (5%)
Query: 14 VYVTHISST-----DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALR 68
+YVT++ S+ DL+ +LY +FS +G ++D+VALKT+ MRGQA ++F++I +AT A+R
Sbjct: 28 LYVTNLPSSKIQKADLRTALYMLFSTYGPVLDVVALKTMAMRGQAHIVFRDIQAATQAMR 87
Query: 69 SMQGFPFYDKPMRIQYSKTDSDVISKIKGTF 99
S++G F + ++IQY+K+ S+ ++K+ GTF
Sbjct: 88 SLEGQTFLGRELKIQYAKSKSNFVAKLDGTF 118
>gi|145543087|ref|XP_001457230.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124425045|emb|CAK89833.1| unnamed protein product [Paramecium tetraurelia]
Length = 221
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 109/229 (47%), Gaps = 39/229 (17%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
I DLK LY +FSQFG+++ IV KT K+RGQAF++F+ I ATNA ++ G YDK
Sbjct: 31 IKLEDLKFVLYILFSQFGEVLQIVMKKTQKLRGQAFIVFQNITYATNAKSALSGMMVYDK 90
Query: 79 PMRIQYSKTDSDVISKIKGTFMERPKKVRK-QPAPVEDPAEAKKSKKKAAKEQARLMQAQ 137
P+ I+++ S + +++G F + K+ ++ QP D A+ +K KK K
Sbjct: 91 PLIIEFAYKKSVIFDRMEGKFYYKQKQQKELQPTLPTDLAKERKQKKLEDK--------- 141
Query: 138 QQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPG 197
+ V Q N L+ P+ L +
Sbjct: 142 ----------------------LNNNTVFNQGENHYHHLS--PKLCYRSYLDNIL----V 173
Query: 198 FKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
++++ R +AFVE++N+ Q+ A L FKITP +K+ +AKK
Sbjct: 174 IHLIKVITAR-GLAFVEYQNDDQATVALKGLSNFKITPECQLKVKYAKK 221
>gi|425868382|gb|AFY04323.1| sans fille, partial [Edwardsina gigantea]
Length = 90
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/63 (69%), Positives = 53/63 (84%)
Query: 48 KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVR 107
KMRG A VIFKEIASA+NALR+MQGFPFYDKPMRI Y+KTDSDV++++KGT + +K
Sbjct: 1 KMRGXAXVIFKEIASASNALRTMQGFPFYDKPMRIAYAKTDSDVVARMKGTXIRADRKKI 60
Query: 108 KQP 110
K P
Sbjct: 61 KPP 63
>gi|85112108|ref|XP_964275.1| hypothetical protein NCU02780 [Neurospora crassa OR74A]
gi|28926050|gb|EAA35039.1| conserved hypothetical protein [Neurospora crassa OR74A]
gi|336465439|gb|EGO53679.1| hypothetical protein NEUTE1DRAFT_126932 [Neurospora tetrasperma
FGSC 2508]
gi|350295272|gb|EGZ76249.1| RNA-binding domain-containing protein [Neurospora tetrasperma FGSC
2509]
Length = 198
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 67/92 (72%), Gaps = 5/92 (5%)
Query: 14 VYVTHISST-----DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALR 68
+YVT++ S DL+ +LY +FS +G ++D+VALKT+KMRGQA +++++I +AT A+R
Sbjct: 24 LYVTNLPSAKIQKDDLRTALYMLFSTYGPVLDVVALKTMKMRGQAHIVYRDIQTATQAMR 83
Query: 69 SMQGFPFYDKPMRIQYSKTDSDVISKIKGTFM 100
S+ G F + M+I Y+K S++I+K+ GT +
Sbjct: 84 SLDGMEFLGRKMKITYAKGRSNIIAKLDGTLV 115
>gi|353239405|emb|CCA71318.1| related to small nuclear ribonucleoprotein U2B` (U2 small nuclear
RNA-associated protein B`) [Piriformospora indica DSM
11827]
Length = 146
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/121 (42%), Positives = 74/121 (61%), Gaps = 11/121 (9%)
Query: 18 HISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYD 77
I+ +L+ LYA+F G I+D+VALKT KMRGQAFV+F+++ +AT ALR+ QG FYD
Sbjct: 16 RINKDELRAQLYALFLPHGPILDVVALKTAKMRGQAFVVFQDMIAATAALRAWQGEMFYD 75
Query: 78 KPMRIQYSKT---------DSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAK 128
KPM I+Y+K+ D + + I T + P + K+P ED E ++ KK A
Sbjct: 76 KPMHIEYAKSKSWATLKAEDPNFVPGIGRTNLPAPPRGEKRPR--EDGTEGDRAAKKVAP 133
Query: 129 E 129
E
Sbjct: 134 E 134
>gi|169769585|ref|XP_001819262.1| RNA binding domain protein [Aspergillus oryzae RIB40]
gi|83767121|dbj|BAE57260.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391863485|gb|EIT72793.1| spliceosomal protein snRNP-U1A/U2B [Aspergillus oryzae 3.042]
Length = 193
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 62/77 (80%)
Query: 23 DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRI 82
DL+ SLY +FS +G ++D+VA+KT +MRGQA ++FK++ ++T A+R++QGF F+ K ++I
Sbjct: 40 DLRLSLYMLFSTYGTVLDVVAMKTKRMRGQAHIVFKDVQASTQAMRALQGFEFFGKQLKI 99
Query: 83 QYSKTDSDVISKIKGTF 99
Y+K SDVI+K++G +
Sbjct: 100 VYAKGTSDVIAKLRGAY 116
>gi|389631617|ref|XP_003713461.1| U2 small nuclear ribonucleoprotein B [Magnaporthe oryzae 70-15]
gi|351645794|gb|EHA53654.1| U2 small nuclear ribonucleoprotein B [Magnaporthe oryzae 70-15]
gi|440463696|gb|ELQ33250.1| U2 small nuclear ribonucleoprotein B [Magnaporthe oryzae Y34]
gi|440481885|gb|ELQ62421.1| U2 small nuclear ribonucleoprotein B [Magnaporthe oryzae P131]
Length = 207
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 67/92 (72%), Gaps = 6/92 (6%)
Query: 14 VYVTHISST------DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNAL 67
+YV +I S D++ +LY +FS +G ++D+V LKT+KMRGQA ++F++I ++T A+
Sbjct: 30 LYVRNIRSDKGYQKQDMRTALYMLFSTYGPLLDVVVLKTMKMRGQAHIVFRDIHASTQAM 89
Query: 68 RSMQGFPFYDKPMRIQYSKTDSDVISKIKGTF 99
RS+ GF F+ ++I+Y+KT S+ I+K+ GTF
Sbjct: 90 RSLDGFDFFGSKLKIEYAKTKSNTIAKLDGTF 121
>gi|397514483|ref|XP_003827514.1| PREDICTED: LOW QUALITY PROTEIN: U2 small nuclear ribonucleoprotein
B''-like [Pan paniscus]
Length = 176
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 47/80 (58%), Positives = 55/80 (68%), Gaps = 5/80 (6%)
Query: 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKL 226
E+ PN NLP ET EMMLS+LFN FPGFK+VR VP +H IA VEFEN + A
Sbjct: 102 EKSPN-----FNLPAETHEMMLSVLFNWFPGFKKVRFVPGKHGIALVEFENGKXAGALSA 156
Query: 227 ALHGFKITPTHAMKISFAKK 246
AL GFK+T +HAMKI+ KK
Sbjct: 157 ALQGFKVTLSHAMKITCVKK 176
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/106 (47%), Positives = 68/106 (64%), Gaps = 15/106 (14%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
I LK+ +A+FSQFG ++ IVALKT+KM + + S+TNALR +QGFP YD
Sbjct: 18 IKEEGLKRFPHALFSQFGHVVSIVALKTMKMXC------RTLGSSTNALRQLQGFPLYDN 71
Query: 79 ----PMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAP-VEDPAEA 119
PM+IQY+KTDSD+ISK+ TF ++ RK+ +P PAE
Sbjct: 72 LHXFPMQIQYAKTDSDIISKMCDTFSDK----RKEKSPNFNLPAET 113
>gi|380746146|gb|AFE48006.1| sans fille, partial [Drosophila mercatorum pararepleta]
gi|380746150|gb|AFE48008.1| sans fille, partial [Drosophila mercatorum]
Length = 99
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 63/128 (49%), Positives = 78/128 (60%), Gaps = 29/128 (22%)
Query: 56 IFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVED 115
IFKEI SA+NALR+MQGFPFYDKPMRI YSK+DSD+++K+KGT+ ERPKKV+
Sbjct: 1 IFKEIGSASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTYKERPKKVKPPKPAPGV 60
Query: 116 PAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILF 175
+ K KK+++ E + P +Q EQPPNQILF
Sbjct: 61 EEKKDKKKKQSSAENSN-----------------PNTQT------------EQPPNQILF 91
Query: 176 LTNLPEET 183
LTNLPEET
Sbjct: 92 LTNLPEET 99
>gi|296805295|ref|XP_002843472.1| U1 small nuclear ribonucleoprotein A [Arthroderma otae CBS 113480]
gi|238844774|gb|EEQ34436.1| U1 small nuclear ribonucleoprotein A [Arthroderma otae CBS 113480]
Length = 186
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 63/77 (81%)
Query: 23 DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRI 82
DL+ +LY +FS +G ++D+VA+++ MRGQA V+F+++ ++T A+R++QGF F+ K M+I
Sbjct: 30 DLRTALYTLFSTYGVVLDVVAMRSKGMRGQAHVVFRDVQTSTQAMRALQGFDFFGKEMKI 89
Query: 83 QYSKTDSDVISKIKGTF 99
Y+K +SD+++K++GT+
Sbjct: 90 VYAKGNSDIVAKLRGTY 106
>gi|212543363|ref|XP_002151836.1| U1 small nuclear ribonucleoprotein A, putative [Talaromyces
marneffei ATCC 18224]
gi|210066743|gb|EEA20836.1| U1 small nuclear ribonucleoprotein A, putative [Talaromyces
marneffei ATCC 18224]
Length = 177
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 61/78 (78%)
Query: 23 DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRI 82
DL+ +LY +FS +G ++D+V LKT KMRGQA +++++I ++T A+R++QGF F+ K + I
Sbjct: 35 DLRMALYTLFSTYGPVLDVVVLKTAKMRGQAHIVYRDIQASTQAMRALQGFDFFGKELNI 94
Query: 83 QYSKTDSDVISKIKGTFM 100
Y+K S VI+K++GT+M
Sbjct: 95 VYAKGSSHVIAKLRGTYM 112
>gi|380746116|gb|AFE47991.1| sans fille, partial [Drosophila sonorae]
Length = 99
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 62/128 (48%), Positives = 77/128 (60%), Gaps = 29/128 (22%)
Query: 56 IFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVED 115
IFKEI SA+NALR+MQGFPFYDKPMRI YSK+DSD+++K+KGT+ ERPKK
Sbjct: 1 IFKEIGSASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTYKERPKK---------- 50
Query: 116 PAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILF 175
K K E+ + + +Q + + P +Q EQPPNQILF
Sbjct: 51 ---VKPPKPMPGVEEKKDKKKKQNSAENSN----PNTQ------------TEQPPNQILF 91
Query: 176 LTNLPEET 183
LTNLPEET
Sbjct: 92 LTNLPEET 99
>gi|400603369|gb|EJP70967.1| RNA recognition domain-containing protein [Beauveria bassiana ARSEF
2860]
Length = 200
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 65/91 (71%), Gaps = 5/91 (5%)
Query: 14 VYVTHISST-----DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALR 68
+YVT++ S DL+ +LY +FS FG ++DIVALKT+ MRGQA ++F++I +AT A+R
Sbjct: 28 LYVTNLPSAKIQKDDLRTALYMLFSTFGPVLDIVALKTMAMRGQAHIVFRDIQAATQAMR 87
Query: 69 SMQGFPFYDKPMRIQYSKTDSDVISKIKGTF 99
++ G F + M+IQY+K+ S ISKI G+
Sbjct: 88 TLDGDEFLGRSMKIQYAKSKSHFISKIDGSL 118
>gi|336265527|ref|XP_003347534.1| hypothetical protein SMAC_04840 [Sordaria macrospora k-hell]
gi|380096401|emb|CCC06449.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 257
Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 69/101 (68%), Gaps = 9/101 (8%)
Query: 9 CVTNF----VYVTHISST-----DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKE 59
VTN +YV ++ S DL+ +LY +FS +G ++D+VALKT+KMRGQA +++++
Sbjct: 75 VVTNLPNQTLYVANLPSAKIQKDDLRTALYMLFSTYGPVLDVVALKTMKMRGQAHIVYRD 134
Query: 60 IASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFM 100
I +AT A+RS+ G F + M+I Y+K S++I+K+ GT +
Sbjct: 135 IQTATQAMRSLDGMEFLGRQMKITYAKGRSNIIAKLDGTLV 175
>gi|402078113|gb|EJT73462.1| U2 small nuclear ribonucleoprotein B [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 198
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 70/101 (69%), Gaps = 6/101 (5%)
Query: 5 LAHICVTNFVYVTHISST------DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFK 58
++ + +YV I S+ D++ +LY +FS +G ++D+VALKT KMRGQA ++F+
Sbjct: 18 VSQVAPNQTLYVRDIPSSRGLQKQDMRMALYMLFSTYGPVLDVVALKTSKMRGQAHIVFR 77
Query: 59 EIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTF 99
+I ++T A+RS+Q F F+ ++I+Y+KT S+ ++K+ GTF
Sbjct: 78 DIHASTQAMRSLQDFDFFGSKLKIEYAKTKSNTVAKLDGTF 118
>gi|449295164|gb|EMC91186.1| hypothetical protein BAUCODRAFT_59124, partial [Baudoinia
compniacensis UAMH 10762]
Length = 97
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 56/77 (72%)
Query: 23 DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRI 82
DL++ LY +FS +G ++D++ALKT KMRGQA V +++ SAT A+R+ QGF + MR+
Sbjct: 18 DLRRELYMLFSTYGPVLDVIALKTAKMRGQAHVTMRDVQSATQAIRACQGFELCGREMRL 77
Query: 83 QYSKTDSDVISKIKGTF 99
YSK SD I+K+ GTF
Sbjct: 78 SYSKNRSDAIAKLTGTF 94
>gi|296422964|ref|XP_002841027.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637257|emb|CAZ85218.1| unnamed protein product [Tuber melanosporum]
Length = 142
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 58/81 (71%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
+ DL+ LY +FS +G ++D+ ALKT+K RGQA + F+++A+AT A+R++QGF F+ K
Sbjct: 30 VRKQDLRTELYTLFSTYGVVLDVNALKTMKGRGQAHIAFRDVAAATQAMRALQGFEFFGK 89
Query: 79 PMRIQYSKTDSDVISKIKGTF 99
MRI Y K S +SK+ GT+
Sbjct: 90 EMRIFYGKGKSHAVSKLDGTY 110
>gi|452837349|gb|EME39291.1| hypothetical protein DOTSEDRAFT_138688 [Dothistroma septosporum
NZE10]
Length = 206
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/79 (50%), Positives = 59/79 (74%)
Query: 23 DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRI 82
DLK++LY +FS +G ++DI ALKT KMRGQA V+F++ SAT A+R QG F+ + MRI
Sbjct: 34 DLKRNLYMLFSTYGPVIDITALKTSKMRGQAHVLFRDQQSATQAMRHCQGSDFFGREMRI 93
Query: 83 QYSKTDSDVISKIKGTFME 101
Y+K+ S ++K+ GTF++
Sbjct: 94 SYAKSRSHTLAKLTGTFVD 112
>gi|331218892|ref|XP_003322123.1| hypothetical protein PGTG_03660 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309301113|gb|EFP77704.1| hypothetical protein PGTG_03660 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 311
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/79 (50%), Positives = 56/79 (70%)
Query: 168 QPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLA 227
+ PN +LFL LP E ++ M+++LF Q+PGF+ VRLVP R IAFV+++ QS AK A
Sbjct: 232 EDPNPVLFLEGLPAEVTDDMMAVLFQQYPGFQSVRLVPGRTGIAFVQYDTAAQSDMAKAA 291
Query: 228 LHGFKITPTHAMKISFAKK 246
L GFK+ P MK+SFA++
Sbjct: 292 LDGFKLAPGVVMKVSFARR 310
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 49/71 (69%), Gaps = 1/71 (1%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
+ +DLK+ LY +F G+++D+V +K KMRGQAFV+F++ AT A+R + G F D+
Sbjct: 26 VKKSDLKRLLYQLFLIHGKVLDVV-VKKGKMRGQAFVVFRDFQGATQAMRQLDGTGFLDR 84
Query: 79 PMRIQYSKTDS 89
++I Y+KT S
Sbjct: 85 ELKITYAKTQS 95
>gi|425868422|gb|AFY04341.1| sans fille, partial [Phytomyza ilicicola]
Length = 84
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/61 (72%), Positives = 50/61 (81%), Gaps = 1/61 (1%)
Query: 58 KEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPA 117
KEIASA+ ALR+MQGFPFYDKPMRI Y+K DSDV++KIKGTF ERPKKV P P +P
Sbjct: 1 KEIASASTALRTMQGFPFYDKPMRIAYAKGDSDVVAKIKGTFKERPKKV-XAPKPAPNPE 59
Query: 118 E 118
E
Sbjct: 60 E 60
>gi|224068350|ref|XP_002302718.1| predicted protein [Populus trichocarpa]
gi|222844444|gb|EEE81991.1| predicted protein [Populus trichocarpa]
Length = 99
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 60/75 (80%), Gaps = 4/75 (5%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ +++ +LKK+L+A+FSQFG+I++I+A KTLK +GQA+V+F+++ SA+NA+R
Sbjct: 24 IYINNLNEKIKIDELKKALHAVFSQFGKILEILAFKTLKHKGQAWVVFEDVQSASNAMRQ 83
Query: 70 MQGFPFYDKPMRIQY 84
MQ FPFYDKPM Y
Sbjct: 84 MQSFPFYDKPMVCLY 98
>gi|299747568|ref|XP_001837125.2| U1 small nuclear ribonucleoprotein A [Coprinopsis cinerea
okayama7#130]
gi|298407578|gb|EAU84742.2| U1 small nuclear ribonucleoprotein A [Coprinopsis cinerea
okayama7#130]
Length = 218
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 55/71 (77%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
I+ +LK LYA+F+ +G+I+DIVA K KMRGQAF++F ++A AT A+R+ +G FYDK
Sbjct: 19 ITKEELKTQLYALFTTYGRIIDIVASKGPKMRGQAFLVFADLAGATTAMRACEGMLFYDK 78
Query: 79 PMRIQYSKTDS 89
PMRI Y+KT S
Sbjct: 79 PMRITYAKTKS 89
>gi|242786438|ref|XP_002480805.1| U1 small nuclear ribonucleoprotein A, putative [Talaromyces
stipitatus ATCC 10500]
gi|218720952|gb|EED20371.1| U1 small nuclear ribonucleoprotein A, putative [Talaromyces
stipitatus ATCC 10500]
Length = 180
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 61/78 (78%)
Query: 23 DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRI 82
DL+ +LY +FS +G ++D+V ++T KMRGQA +++++I ++T A+R++QGF F+ + + I
Sbjct: 38 DLRMALYMLFSTYGPVLDVVVMRTAKMRGQAHIVYRDIQASTQAMRALQGFDFFGRELAI 97
Query: 83 QYSKTDSDVISKIKGTFM 100
Y+K S VI+K++GT+M
Sbjct: 98 VYAKGSSHVIAKLRGTYM 115
>gi|344301346|gb|EGW31658.1| hypothetical protein SPAPADRAFT_140622 [Spathaspora passalidarum
NRRL Y-27907]
Length = 215
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 100/208 (48%), Gaps = 39/208 (18%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + +S T LK L ++F+ +G+I+ I A + LKM+GQAF+ F+ S+T A+
Sbjct: 12 IYINNLNDRVSLTKLKSELESLFTSYGKILQITAHRNLKMKGQAFITFESKVSSTKAM-D 70
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
+Q ++KPM I Y+K +SD + E +V D E +KS+K
Sbjct: 71 LQNHILFNKPMHITYAKGNSDA-------YYELHNEV--------DKIEQRKSEK----- 110
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLS 189
+ Q L + P + + PPN++L + L ++ L+
Sbjct: 111 ----------ERQNLKRKSTPAGGKQKKKKVKSEDWKSLPPNKLLLIQRLDDDE---QLT 157
Query: 190 MLFNQFPGFKEVRLVPNRHDIAFVEFEN 217
F QF GF VRLV R +AF+EF+N
Sbjct: 158 SYFEQFEGFSNVRLVKVRK-LAFIEFDN 184
>gi|401411093|ref|XP_003884994.1| putative small nuclear ribonucleoprotein U1A [Neospora caninum
Liverpool]
gi|325119413|emb|CBZ54966.1| putative small nuclear ribonucleoprotein U1A [Neospora caninum
Liverpool]
Length = 399
Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 64/90 (71%), Gaps = 4/90 (4%)
Query: 14 VYVTHISST----DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ +I+ +LK++L ++F QFG+I +IVA+ + RGQA+++F + SAT A++
Sbjct: 130 IYINNINDKVKLPELKENLRSMFKQFGEIREIVAMSSFWRRGQAWIVFASVESATKAIQG 189
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTF 99
MQGF ++ +P+RI YS T SD+I+K GTF
Sbjct: 190 MQGFVYHGQPLRINYSVTKSDIIAKEDGTF 219
>gi|145533136|ref|XP_001452318.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124420006|emb|CAK84921.1| unnamed protein product [Paramecium tetraurelia]
Length = 275
Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 71/235 (30%), Positives = 124/235 (52%), Gaps = 25/235 (10%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
+++ +++++LYA+FSQ G+++DI+ K + MRGQAF++ ++ SA A YDK
Sbjct: 59 VTAEEMRQTLYALFSQSGKVLDIIVKKNILMRGQAFILMEDEESAIQAQIKFHNTQLYDK 118
Query: 79 PMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQ 138
M++ ++K S IS KG E+ K P+ D + K+ KK+ ++ R M Q+
Sbjct: 119 VMKVNFAKEKSYYIS--KGDNEEKEK------LPMSD--KIKEHKKRIQDKRQREMFNQK 168
Query: 139 QQMQALSVQQPPVSQPAPPAPM---ATAGVPEQPPNQILFLTNLPEETSEMM----LSML 191
QQ +A P +S P + A++ + NQ F + L ++ ++ L
Sbjct: 169 QQREA-----PTISMPLTVNQVYTGASSKIKVLLYNQ-FFDSKLTKQRLHLVDFVNLEQH 222
Query: 192 FNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
F F GF+E R + + +AFVEFE+E+Q+ L+G + ++IS+ KK
Sbjct: 223 FRNFFGFREFRGIKPK-GVAFVEFEDELQATHCLNELNGTQFEEV-TLQISYQKK 275
>gi|448116767|ref|XP_004203101.1| Piso0_000700 [Millerozyma farinosa CBS 7064]
gi|359383969|emb|CCE78673.1| Piso0_000700 [Millerozyma farinosa CBS 7064]
Length = 218
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 112/238 (47%), Gaps = 38/238 (15%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+YV + IS LK +L F +G+I+ + A K LKM+GQAF+ F+ S+ NA+
Sbjct: 8 IYVRNLNDRISLNKLKPALEEKFQAYGRIIQLTAHKNLKMKGQAFITFESSESSKNAVEK 67
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
+ KPM++ ++K++SD +++ V + PV+ E K+ K + +++
Sbjct: 68 ANNIILFGKPMQVSFAKSNSD------NFYLQ----VEQNEEPVQ---ERKRHKAELSEK 114
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLS 189
Q + P + + + PPN+IL L NL +T+ L+
Sbjct: 115 QT-------------ASNTKPTKAASKASTKDLQSWKDIPPNKILLLQNLRNDTTNQELN 161
Query: 190 MLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAA-------KLALHGFKITPTHAMK 240
F+ + GF +RLV R ++ FVEFENE S +L G I T+A K
Sbjct: 162 EYFDAYDGFINLRLVKIR-NLCFVEFENESASTKCLENADYERLKSFGDHIILTYAKK 218
>gi|380746090|gb|AFE47978.1| sans fille, partial [Drosophila mayaguana]
Length = 93
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 73/122 (59%), Gaps = 29/122 (23%)
Query: 62 SATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKK 121
SA+NALR+MQGFPFYDKPMRI YSK+DSD+++K+KGT+ ERPKKV+ + K
Sbjct: 1 SASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTYKERPKKVKPPKPVPGVEEKKDK 60
Query: 122 SKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPE 181
KK+++ E A P +Q EQPPNQILFLTNLPE
Sbjct: 61 KKKQSSAENAN-----------------PNTQ------------TEQPPNQILFLTNLPE 91
Query: 182 ET 183
ET
Sbjct: 92 ET 93
>gi|294953699|ref|XP_002787894.1| U1 small nuclear ribonucleoprotein A, putative [Perkinsus marinus
ATCC 50983]
gi|239902918|gb|EER19690.1| U1 small nuclear ribonucleoprotein A, putative [Perkinsus marinus
ATCC 50983]
Length = 152
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 69/110 (62%), Gaps = 4/110 (3%)
Query: 6 AHICVTNFVYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIA 61
A + N +YV +++ DLK L+ +F+ FG I+ + A K+ RGQAF+ F+E +
Sbjct: 12 AAGGINNTLYVNNLNDKIKLDDLKPLLFELFASFGPILAVYAGKSQSRRGQAFIAFREAS 71
Query: 62 SATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPA 111
+A A++++ GFPF DKP+R+ +++ SDV+++ GTF R + + PA
Sbjct: 72 NAALAMKTLNGFPFLDKPLRVAFARVKSDVVARADGTFKPRRRGTKTAPA 121
>gi|241953539|ref|XP_002419491.1| U2 small nuclear ribonucleoprotein, putative [Candida dubliniensis
CD36]
gi|223642831|emb|CAX43086.1| U2 small nuclear ribonucleoprotein, putative [Candida dubliniensis
CD36]
Length = 225
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 107/238 (44%), Gaps = 46/238 (19%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + +S LKK L F G+I+ I ALKTLK++GQAF+ F++I SAT AL
Sbjct: 29 IYINNLNEKVSINKLKKELQLTFDTCGKILQISALKTLKLKGQAFITFEDIPSATKAL-E 87
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
KPM + Y+K+D+DVIS + E + K+K K
Sbjct: 88 FNKKDLLAKPMNVTYAKSDADVIS---------------TDESIAQRKELRSKKRKLDK- 131
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLS 189
+ +Q++ L + E PPN IL + NL L
Sbjct: 132 ---MGTKNDKQIKKLRDEW-----------------KELPPNHILLIQNLEHFDD---LK 168
Query: 190 MLFNQFPGFKEVRLVPNRHDIAFVEFEN-EMQSAAAKLALHGFKITPTHAMKISFAKK 246
+ F +F GF VRLV + +AF+EFEN E+ + I H + +SFAKK
Sbjct: 169 IFFEKFAGFDNVRLVKVKS-LAFIEFENEELAKSCLDQTTEEALIQFGHDVILSFAKK 225
>gi|402217410|gb|EJT97490.1| RNA-binding domain-containing protein, partial [Dacryopinax sp.
DJM-731 SS1]
Length = 176
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 57/78 (73%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
I+ +L+ LYA+F+ +G+++D+VA K KM+GQAFV+F ++A AT A+R+M G FYDK
Sbjct: 18 INKEELRAQLYALFTPYGKVIDVVARKGTKMKGQAFVVFGDLAGATTAMRAMDGEFFYDK 77
Query: 79 PMRIQYSKTDSDVISKIK 96
PM IQY +T S +I+
Sbjct: 78 PMHIQYGRTKSHATIRIE 95
>gi|70991385|ref|XP_750541.1| U1 small nuclear ribonucleoprotein A [Aspergillus fumigatus Af293]
gi|66848174|gb|EAL88503.1| U1 small nuclear ribonucleoprotein A, putative [Aspergillus
fumigatus Af293]
gi|159124097|gb|EDP49215.1| U1 small nuclear ribonucleoprotein A, putative [Aspergillus
fumigatus A1163]
Length = 294
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 71/115 (61%), Gaps = 24/115 (20%)
Query: 9 CVTNF-VYVTHI----SSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASA 63
C+T +Y T++ DL+ SLY +FS +G ++D+VA+KT KMRGQA ++FK++ ++
Sbjct: 101 CLTEIRLYCTNLPDKLRKYDLRLSLYTLFSTYGTVLDVVAMKTEKMRGQAHIVFKDVQAS 160
Query: 64 TNALRSMQGFPFYDKPM-------------------RIQYSKTDSDVISKIKGTF 99
T A+R++QGF F+ K M +I Y+K SDVI++++GT+
Sbjct: 161 TQAMRALQGFEFFGKEMVSHFFFNGLATALNTVNFQKIVYAKGTSDVIARLRGTY 215
>gi|425868395|gb|AFY04328.1| sans fille, partial [Oreogeton scopifer]
Length = 83
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/46 (82%), Positives = 45/46 (97%)
Query: 54 FVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTF 99
F+IFKEI+SA+NALR+MQGFPFYDKPMRI Y+KTDSDV++KIKGTF
Sbjct: 1 FLIFKEISSASNALRTMQGFPFYDKPMRIAYAKTDSDVVAKIKGTF 46
>gi|171696032|ref|XP_001912940.1| hypothetical protein [Podospora anserina S mat+]
gi|170948258|emb|CAP60422.1| unnamed protein product [Podospora anserina S mat+]
Length = 193
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 68/100 (68%), Gaps = 11/100 (11%)
Query: 5 LAHICVTNFVYVTHISST-----DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKE 59
+A + +YVT++ S DL+ +LY +FS +G ++D+VALKT+KMRGQA +++K+
Sbjct: 14 VASVPPNQTLYVTNLPSNKIQKEDLRTALYMLFSTYGAVLDVVALKTMKMRGQAHIVYKD 73
Query: 60 IASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTF 99
I +AT A+RS+ GF F+ + + + S++I+K+ GTF
Sbjct: 74 IQTATQAMRSLNGFEFFGREL------SKSNIIAKLDGTF 107
>gi|398395477|ref|XP_003851197.1| hypothetical protein MYCGRDRAFT_30914, partial [Zymoseptoria
tritici IPO323]
gi|339471076|gb|EGP86173.1| hypothetical protein MYCGRDRAFT_30914 [Zymoseptoria tritici IPO323]
Length = 111
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 61/83 (73%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
+ +DLK++LY +FS +G ++DI ALKT KMRGQA ++F++I SA A+R++ F+ +
Sbjct: 15 LQKSDLKRNLYMLFSTYGPVIDITALKTPKMRGQAHILFRDINSAQLAMRNLNNMEFFGR 74
Query: 79 PMRIQYSKTDSDVISKIKGTFME 101
MRI Y+K+ S I+K+ GTF++
Sbjct: 75 EMRIAYAKSRSQTIAKLTGTFVD 97
>gi|453082261|gb|EMF10309.1| RNA-binding domain-containing protein [Mycosphaerella populorum
SO2202]
Length = 235
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 58/79 (73%)
Query: 23 DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRI 82
DLK++LY +FS +G ++D+ A+KT KMRGQA V+F++ +AT A+R QG F+ + +++
Sbjct: 33 DLKRNLYMLFSTYGPVLDVTAVKTSKMRGQAHVLFRDANTATQAMRHTQGMDFFGRELKV 92
Query: 83 QYSKTDSDVISKIKGTFME 101
Y+KT S ++K+ GTF +
Sbjct: 93 TYAKTRSQTLAKLTGTFHD 111
>gi|326433216|gb|EGD78786.1| hypothetical protein PTSG_01762 [Salpingoeca sp. ATCC 50818]
Length = 462
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 54/77 (70%)
Query: 170 PNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALH 229
PN ILF+ N+P T+ ++ LF QF GFKEVR VP+R DIAFVE++N MQS AK+ LH
Sbjct: 386 PNAILFVQNIPAGTTAERITNLFKQFAGFKEVRTVPSRPDIAFVEYDNPMQSGYAKVQLH 445
Query: 230 GFKITPTHAMKISFAKK 246
+I P + ++FAKK
Sbjct: 446 QHEIAPGSKITVAFAKK 462
>gi|380746096|gb|AFE47981.1| sans fille, partial [Drosophila mojavensis]
Length = 92
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/121 (47%), Positives = 72/121 (59%), Gaps = 29/121 (23%)
Query: 63 ATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKS 122
A+NALR+MQGFPFYDKPMRI YSK+DSD+++K+KGT+ ERPKKV+ + K
Sbjct: 1 ASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTYKERPKKVKPPKPVPGVEEKKDKK 60
Query: 123 KKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEE 182
KK+++ E A P +Q EQPPNQILFLTNLPEE
Sbjct: 61 KKQSSAENAN-----------------PNTQ------------TEQPPNQILFLTNLPEE 91
Query: 183 T 183
T
Sbjct: 92 T 92
>gi|380746138|gb|AFE48002.1| sans fille, partial [Drosophila aldrichi]
Length = 93
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/122 (47%), Positives = 72/122 (59%), Gaps = 29/122 (23%)
Query: 56 IFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVED 115
IFKEI SA+NALR+MQGFPFYDKPMRI YSK+DSD+++K+KGT+ ERPKKV+
Sbjct: 1 IFKEIGSASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTYKERPKKVKPPKPVPGV 60
Query: 116 PAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILF 175
+ K KK+++ E A P +Q EQPPNQILF
Sbjct: 61 EEKKDKKKKQSSAENAN-----------------PNTQT------------EQPPNQILF 91
Query: 176 LT 177
LT
Sbjct: 92 LT 93
>gi|294655401|ref|XP_457541.2| DEHA2B13684p [Debaryomyces hansenii CBS767]
gi|199429929|emb|CAG85550.2| DEHA2B13684p [Debaryomyces hansenii CBS767]
Length = 252
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 110/242 (45%), Gaps = 38/242 (15%)
Query: 11 TNFVYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNA 66
T VYV + +S LK L ++F ++G+I+ I A K LKM+GQAFV F+ ++ A
Sbjct: 43 TETVYVNNLNDKVSVNKLKGELESVFQKYGKIIQITAHKNLKMKGQAFVTFENKTASEAA 102
Query: 67 LRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKA 126
+ +Q + KPM ++Y++++SD + E+ E +K K
Sbjct: 103 IHGLQEHELFGKPMHVEYARSNSD--------------NYYRDILKDEEAIEIRKQLKMK 148
Query: 127 AKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEM 186
A EQA ++ Q PPN+IL + NL E +
Sbjct: 149 ANEQAAGDAKGVKKSGVKKAQTWKAI----------------PPNKILLIQNLKPEITNG 192
Query: 187 MLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKIT--PTHAMKISFA 244
L F + GF RLV R+ ++F+EFENEM + L K+ T A+ +++A
Sbjct: 193 DLLEFFEAYGGFINSRLVKVRN-LSFIEFENEMSATNCLEDLTKEKLEQFGTDAL-VTYA 250
Query: 245 KK 246
KK
Sbjct: 251 KK 252
>gi|190345771|gb|EDK37715.2| hypothetical protein PGUG_01813 [Meyerozyma guilliermondii ATCC
6260]
Length = 220
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 106/204 (51%), Gaps = 29/204 (14%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
+S L++SL +IF++FG+++ I A K +KM+GQAFV F + + A+ +Q + + K
Sbjct: 13 VSVNTLRRSLESIFAKFGEVLQITANKNIKMKGQAFVTFANKSQSAAAMEKLQSYELFQK 72
Query: 79 PMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQ 138
P+ I Y+K +SD F+ V+K VE K+ +KA +E A +
Sbjct: 73 PIEISYAKKNSDQY------FI----AVKKDTETVE-----KRKNEKAKREST---SANK 114
Query: 139 QQMQALSVQQPPVSQPAPPAPMATAGVPEQ----PPNQILFLTNLPEETSEMMLSMLFNQ 194
+++Q +P + A P P+ E PPN +L L N ++++ +L F
Sbjct: 115 RKVQN---DEPDFA--AAPEPIKKKIKIEDWKSLPPNNVLLLQNTTVDSND-VLQAFFGS 168
Query: 195 FPGFKEVRLVPNRHDIAFVEFENE 218
FPGF R V +++F+EFE+E
Sbjct: 169 FPGFINTRFVK-ALNLSFIEFESE 191
>gi|255726088|ref|XP_002547970.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240133894|gb|EER33449.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 217
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 120/244 (49%), Gaps = 45/244 (18%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+YV + +S LKK L F+ +G+I+ I A KTLK++GQAF+ F I SA N+L
Sbjct: 8 IYVNNLNEKVSINKLKKELNKTFTPYGKILQITAFKTLKLKGQAFITFDNIESAINSLE- 66
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
+ ++KP++I ++ ++SD++ + + RKQ ++ ++ +K + K+
Sbjct: 67 LNNIEIFNKPIKITFANSNSDIVES------DEIIRERKQNKSLK-TSKKRKLEDNGNKD 119
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLS 189
++L ++++ L+ + E P N IL L N+ + L
Sbjct: 120 NSKLKTKTKKKLDMLNEWK------------------ELPSNHILLLQNINKFDE---LE 158
Query: 190 MLFNQFPGFKEVRLVPNRHDIAFVEFENE-------MQSAAAKLALHGFKITPTHAMKIS 242
FN F GF+ +R+V ++ +AF+EFENE Q +L G P + +S
Sbjct: 159 EFFNDFNGFENIRVVKVKN-LAFIEFENEEMATNCLQQVKDDQLIQFG----PEDEVLLS 213
Query: 243 FAKK 246
FAKK
Sbjct: 214 FAKK 217
>gi|380746154|gb|AFE48010.1| sans fille, partial [Drosophila borborema]
Length = 93
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 56/122 (45%), Positives = 68/122 (55%), Gaps = 29/122 (23%)
Query: 56 IFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVED 115
IFKEI SA+NALR+MQGFPFYDKPMRI YSK+DSD+++K+KGT+ ERPKKV
Sbjct: 1 IFKEIGSASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTYKERPKKV--------- 51
Query: 116 PAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILF 175
+E+ + Q A P +Q EQPPNQILF
Sbjct: 52 ---KPPKPVPGVEEKKDKKKKQNSAENA-----NPNTQT------------EQPPNQILF 91
Query: 176 LT 177
LT
Sbjct: 92 LT 93
>gi|380746102|gb|AFE47984.1| sans fille, partial [Drosophila nigricruria]
Length = 93
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 58/122 (47%), Positives = 71/122 (58%), Gaps = 29/122 (23%)
Query: 56 IFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVED 115
IFKEI SA+NALR+MQGFPFYDKPMRI YSK DSD+++K+KGT+ ERPKKV+
Sbjct: 1 IFKEIGSASNALRTMQGFPFYDKPMRIAYSKADSDIVAKLKGTYKERPKKVKPPKPVPGV 60
Query: 116 PAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILF 175
+ K KK+++ E A P +Q EQPPNQILF
Sbjct: 61 EEKKDKKKKQSSAENAN-----------------PNTQT------------EQPPNQILF 91
Query: 176 LT 177
LT
Sbjct: 92 LT 93
>gi|119467920|ref|XP_001257766.1| RNA binding domain protein [Neosartorya fischeri NRRL 181]
gi|119405918|gb|EAW15869.1| RNA binding domain protein [Neosartorya fischeri NRRL 181]
Length = 213
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 63/96 (65%), Gaps = 19/96 (19%)
Query: 23 DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPM-- 80
DL+ SLY +FS +G ++D+VALKT KMRGQA ++FK++ ++T A+R++QGF F+ + M
Sbjct: 39 DLRLSLYTLFSTYGTVLDVVALKTEKMRGQAHIVFKDVQASTQAMRALQGFEFFGREMVG 98
Query: 81 -----------------RIQYSKTDSDVISKIKGTF 99
+I Y+K SDVI++++GT+
Sbjct: 99 AFGFNGLATGLNTVYFQKIVYAKGTSDVIARLRGTY 134
>gi|380746184|gb|AFE48025.1| sans fille, partial [Drosophila bifurca]
Length = 92
Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 57/121 (47%), Positives = 72/121 (59%), Gaps = 29/121 (23%)
Query: 63 ATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKS 122
A+NALR+MQGFPFYDKPMRI YSK+DSD+++K+KGT+ ERPKKV+ + K
Sbjct: 1 ASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTYKERPKKVKPPKPVPGVEEKKDKK 60
Query: 123 KKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEE 182
KK+++ E + P +Q EQPPNQILFLTNLPEE
Sbjct: 61 KKQSSAENSN-----------------PNTQ------------TEQPPNQILFLTNLPEE 91
Query: 183 T 183
T
Sbjct: 92 T 92
>gi|380746074|gb|AFE47970.1| sans fille, partial [Drosophila buzzatii]
gi|380746118|gb|AFE47992.1| sans fille, partial [Drosophila starmeri]
gi|380746126|gb|AFE47996.1| sans fille, partial [Drosophila moju]
gi|380746160|gb|AFE48013.1| sans fille, partial [Drosophila venezolana]
Length = 93
Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 57/122 (46%), Positives = 72/122 (59%), Gaps = 29/122 (23%)
Query: 56 IFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVED 115
IFKEI SA+NALR+MQGFPFYDKPMRI YSK+DSD+++K+KGT+ ERPKKV+
Sbjct: 1 IFKEIGSASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTYKERPKKVKPPKPVPGV 60
Query: 116 PAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILF 175
+ K KK+++ E + P +Q EQPPNQILF
Sbjct: 61 EEKKDKKKKQSSAENSN-----------------PNTQT------------EQPPNQILF 91
Query: 176 LT 177
LT
Sbjct: 92 LT 93
>gi|68478695|ref|XP_716616.1| hypothetical protein CaO19.7375 [Candida albicans SC5314]
gi|46438288|gb|EAK97621.1| hypothetical protein CaO19.7375 [Candida albicans SC5314]
gi|238880991|gb|EEQ44629.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 204
Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 110/244 (45%), Gaps = 58/244 (23%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+YV + +S LK L F+ G+I+ I ALKTLK++GQAF+ F++I SAT AL
Sbjct: 8 IYVNNLNEKVSINKLKNELQQTFNVCGKILQISALKTLKLKGQAFITFEDIPSATKALE- 66
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
+ + KPM + Y+K+D+DVIS + ++ + KS K K+
Sbjct: 67 LNKKDLFSKPMNVTYAKSDADVIS--------TDDNIAQRKKLRSKKRKLDKSGTKNDKQ 118
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLS 189
+L + E PPN IL + NL + L
Sbjct: 119 IKKLRDEWK----------------------------ELPPNHILLIQNLEKFDD---LK 147
Query: 190 MLFNQFPGFKEVRLVPNRHDIAFVEFENE-------MQSAAAKLALHGFKITPTHAMKIS 242
+ F +F GF VRLV ++ +AF+EFE+E Q+ L G H + +S
Sbjct: 148 IYFEKFAGFDNVRLVKVKN-LAFIEFESEDLAKSCLDQTTEDDLKQFG------HDVILS 200
Query: 243 FAKK 246
FAKK
Sbjct: 201 FAKK 204
>gi|164658503|ref|XP_001730377.1| hypothetical protein MGL_2759 [Malassezia globosa CBS 7966]
gi|159104272|gb|EDP43163.1| hypothetical protein MGL_2759 [Malassezia globosa CBS 7966]
Length = 229
Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 55/67 (82%)
Query: 23 DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRI 82
+L++ LY++F +G+++D+VA + MRGQAFV+F+++ SAT ALR++ GF FY+KP+++
Sbjct: 38 ELRRQLYSLFGSYGKVLDVVATRADGMRGQAFVVFRDLQSATAALRALDGFEFYEKPLKL 97
Query: 83 QYSKTDS 89
+Y++T S
Sbjct: 98 EYARTRS 104
>gi|425868389|gb|AFY04325.1| sans fille, partial [Tipula abdominalis]
Length = 88
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 43/44 (97%)
Query: 56 IFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTF 99
IFKEIASA NAL++MQGFPFYDKP+RIQYSK+DSDVI+KIKGTF
Sbjct: 3 IFKEIASAXNALKTMQGFPFYDKPLRIQYSKSDSDVIAKIKGTF 46
>gi|254571559|ref|XP_002492889.1| hypothetical protein [Komagataella pastoris GS115]
gi|238032687|emb|CAY70710.1| Hypothetical protein PAS_chr3_0663 [Komagataella pastoris GS115]
gi|328353098|emb|CCA39496.1| Nucleolysin TIA-1 [Komagataella pastoris CBS 7435]
Length = 211
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 110/239 (46%), Gaps = 51/239 (21%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
+S LKK L +FS +G ++ I A K LKM+GQAFV + + +A +A++S+QG +DK
Sbjct: 13 VSVNTLKKKLDELFSPYGNVLAITAHKNLKMKGQAFVAYAKQENAIDAVQSLQGTMLFDK 72
Query: 79 PMRIQYSKTDSDVISK-----------IKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAA 127
+ IQ + + SD + K +K +E+ +K RK+ + E+P
Sbjct: 73 QLEIQDATSQSDAVLKETLGKTEFEDYLKKRKVEKEQKNRKRASSDEEP----------- 121
Query: 128 KEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMM 187
+Q+ + + + V PN++L L + E +
Sbjct: 122 ----------KQKTKRIKI------------------VINNEPNKLLLLQKVDPELTSAD 153
Query: 188 LSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
+ +F++F G KE+ LV R+ +A +EF E + K AL H +++AKK
Sbjct: 154 IKSIFDKFQGLKEINLVKPRN-LALIEFTEESAAVICKEALGQTIQIKNHECYLTYAKK 211
>gi|448119242|ref|XP_004203684.1| Piso0_000700 [Millerozyma farinosa CBS 7064]
gi|359384552|emb|CCE78087.1| Piso0_000700 [Millerozyma farinosa CBS 7064]
Length = 218
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 111/238 (46%), Gaps = 38/238 (15%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
VYV + IS LK +L F +G+I+ + A K LKM+GQAF+ F+ S+ A+
Sbjct: 8 VYVRNLNDRISLNKLKPALEEKFQAYGRILQLTAHKNLKMKGQAFITFESSESSKRAVEE 67
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
+ + KPM++ ++K++SD +++ V + PV+ E K+ K + +++
Sbjct: 68 AKNIVLFGKPMQVTFAKSNSDNF------YLQ----VEQNEGPVQ---ERKRHKAELSEK 114
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLS 189
+ + P + + PPN+IL L NL +T+ L+
Sbjct: 115 ET-------------ASNTKPTKVASKASTKDFQSWKNIPPNKILLLQNLKNDTTSQELN 161
Query: 190 MLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAA-------KLALHGFKITPTHAMK 240
F+ + GF +RLV R ++ FVEFENE S +L G I T+A K
Sbjct: 162 EYFDAYDGFINLRLVKIR-NLCFVEFENESASTKCLETGDYERLKSFGDNIILTYAKK 218
>gi|389586007|dbj|GAB68736.1| U1A small nuclear ribonucleoprotein [Plasmodium cynomolgi strain B]
Length = 376
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 65/99 (65%), Gaps = 4/99 (4%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+YV +++ ++KKSL +F Q+G I D+V +K+ +GQA+V++ + S+T AL +
Sbjct: 208 LYVKNLNDRIKIDEMKKSLKDLFKQYGVIEDLVVMKSFWRKGQAWVVYDTVESSTKALNA 267
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRK 108
+QGF + K M+I YS SDV SK GTF+ER K+ +K
Sbjct: 268 LQGFVLFGKIMQINYSHNKSDVHSKRDGTFVERSKEPKK 306
>gi|380746152|gb|AFE48009.1| sans fille, partial [Drosophila fulvimacula]
Length = 87
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/46 (76%), Positives = 43/46 (93%)
Query: 57 FKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMER 102
FKEI SA+NALR+MQGFPFYDKPMRI YSK+DSD+++K+KGT+ ER
Sbjct: 1 FKEIGSASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTYKER 46
>gi|431891771|gb|ELK02305.1| U1 small nuclear ribonucleoprotein A [Pteropus alecto]
Length = 105
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/60 (65%), Positives = 48/60 (80%)
Query: 16 VTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPF 75
V I +LKKSLYAIFSQFGQI+DI+ ++LKM GQAF FKE+++ TNAL S+QGFPF
Sbjct: 46 VRKIKKDELKKSLYAIFSQFGQILDILVSRSLKMSGQAFAAFKEVSNTTNALHSLQGFPF 105
>gi|440294232|gb|ELP87249.1| U2 small nuclear ribonucleoprotein B'', putative [Entamoeba
invadens IP1]
Length = 251
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/249 (27%), Positives = 111/249 (44%), Gaps = 39/249 (15%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ +++ + LK L +FS FG ++ + K MRGQAFV++ + +A +A S
Sbjct: 26 LYINNLTQAFKPSKLKAHLTKLFSPFGVVLTVQVRKARAMRGQAFVVYNSMDAAEHAFLS 85
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKK---------VRKQPAP--VEDPAE 118
+Q + +PM I Y+KT+SD G + R KK + + AP V
Sbjct: 86 LQDNSLFGRPMHIAYAKTESDAFVASTGRKISRVKKPKSAELKISAQNESAPNQVNVGTS 145
Query: 119 AKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTN 178
A K ++ Q +Q + QP PM N+ILF+ N
Sbjct: 146 AVDGVGKVQRDLTNDTNPQNEQTRV---------QPKIEKPMI---------NKILFIEN 187
Query: 179 LPEETSEMMLSMLFNQFPGFKEVRLVPNR-HDIAFVEFENEMQSAAAKLALHGFKITPTH 237
+P+ + L L+ ++ GF EVR + R +AF+EF +E S A +G
Sbjct: 188 VPKNYGKDELIALYTKYSGFSEVRYIKVRGSGVAFIEFRDEQSSEIALNETNG-----KD 242
Query: 238 AMKISFAKK 246
+ + +AKK
Sbjct: 243 GLVLQYAKK 251
>gi|238488098|ref|XP_002375287.1| small nuclear ribonucleoprotein, putative [Aspergillus flavus
NRRL3357]
gi|220700166|gb|EED56505.1| small nuclear ribonucleoprotein, putative [Aspergillus flavus
NRRL3357]
Length = 147
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 56/69 (81%)
Query: 31 IFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSD 90
+FS +G ++D+VA+KT +MRGQA ++FK++ ++T A+R++QGF F+ K ++I Y+K SD
Sbjct: 2 LFSTYGTVLDVVAMKTKRMRGQAHIVFKDVQASTQAMRALQGFEFFGKQLKIVYAKGTSD 61
Query: 91 VISKIKGTF 99
VI+K++G +
Sbjct: 62 VIAKLRGAY 70
>gi|380746132|gb|AFE47999.1| sans fille, partial [Drosophila aracataca]
Length = 75
Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 34/44 (77%), Positives = 42/44 (95%)
Query: 56 IFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTF 99
IFKEI SA+NALR+MQGFPFYDKPMRI YSK+DSD+++K+KGT+
Sbjct: 1 IFKEIGSASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTY 44
>gi|380746188|gb|AFE48027.1| sans fille, partial [Drosophila pegasa]
Length = 89
Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 34/44 (77%), Positives = 42/44 (95%)
Query: 56 IFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTF 99
IFKEI SA+NALR+MQGFPFYDKPMRI YSK+DSD+++K+KGT+
Sbjct: 1 IFKEIGSASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTY 44
>gi|392593039|gb|EIW82365.1| RNA-binding domain-containing protein [Coniophora puteana
RWD-64-598 SS2]
Length = 154
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 54/71 (76%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
++ +L+ LYA+F+ G+++D+VA K KMRGQAF++F ++ASAT A+R+ +G FYDK
Sbjct: 18 VNKEELRIQLYALFTTHGKLIDVVASKGPKMRGQAFLVFSDLASATTAMRACEGMVFYDK 77
Query: 79 PMRIQYSKTDS 89
P+RI Y+K S
Sbjct: 78 PLRIAYAKEKS 88
>gi|380746128|gb|AFE47997.1| sans fille, partial [Drosophila canalinea]
Length = 91
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/44 (77%), Positives = 42/44 (95%)
Query: 56 IFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTF 99
IFKEI SA+NALR+MQGFPFYDKPMRI YSK+DSD+++K+KGT+
Sbjct: 1 IFKEIGSASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTY 44
>gi|432117206|gb|ELK37642.1| U1 small nuclear ribonucleoprotein A [Myotis davidii]
Length = 90
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/80 (56%), Positives = 56/80 (70%), Gaps = 2/80 (2%)
Query: 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKL 226
E P N +LFL+NLPE T++ MLSM FNQF FK V LV +HD+AFVE +N +Q+ A
Sbjct: 13 ENPLNHLLFLSNLPE-TNKFMLSMCFNQFSVFK-VWLVLGQHDMAFVESDNRVQAGALGD 70
Query: 227 ALHGFKITPTHAMKISFAKK 246
+L GFKIT + KISF KK
Sbjct: 71 SLEGFKITQNYPTKISFVKK 90
>gi|403357542|gb|EJY78399.1| U2 small nuclear ribonucleoprotein b'' [Oxytricha trifallax]
Length = 322
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 109/217 (50%), Gaps = 31/217 (14%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKT---LKMRGQAFVIFKEIASATNALRSMQGFPF 75
I + ++K +L+ +FSQ G++++I T K+RGQAF++F+E A L+ ++GF
Sbjct: 116 IKTDEMKITLFHLFSQVGEVIEINMRNTNNSQKLRGQAFIVFREQDMADRGLQELKGFNL 175
Query: 76 YDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQ 135
+ K + IQY+K +SDV K KG F + + R+Q +K + K +++ +L+
Sbjct: 176 FGKSIDIQYAKQNSDVTLKNKGVFDDSIRLNRRQ-------KRKQKDELKRKEKKEKLVI 228
Query: 136 AQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQF 195
A+QQ Q L+ ++ + Q A + NLP ++++L L +
Sbjct: 229 AEQQLKQQLNYKEMALKQSNAIA-----------------IDNLPGNYNQLLLQELLRNY 271
Query: 196 PGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFK 232
PG + L +H +A V F S AK+AL G
Sbjct: 272 PGVADYNLDVEKH-VATVHFHT---SNDAKVALAGLN 304
>gi|406603206|emb|CCH45243.1| U1 small nuclear ribonucleoprotein [Wickerhamomyces ciferrii]
Length = 232
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 113/237 (47%), Gaps = 39/237 (16%)
Query: 14 VYVTHI----SSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
VY+ +I S +K L IF +G I I A K +KMRGQAFV + A A++
Sbjct: 31 VYIRNINEKVSINTIKSKLTEIFDNYGPIQSITAHKNVKMRGQAFVSLESEEKAQQAIKE 90
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
+ G ++K + + ++K+ S+ + K VE +K+K KE
Sbjct: 91 LNGTQLFEKKIEVSFAKSSSNSSVENK---------------LVEKDYNEYLNKRKLHKE 135
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLS 189
+ L + ++Q+ PV +P + PPN+IL + LP++ ++ L
Sbjct: 136 E--LDKKKEQE---------PVKKPK-------IKIENLPPNKILLVQGLPKDVTQDELV 177
Query: 190 MLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
+F ++ GF EVRLV R +AF+E+EN+ + AK I T + ++FAKK
Sbjct: 178 EIFEKYNGFVEVRLVAVRG-VAFIEYENDKDAIPAKEGTADLTIKDTKPI-VNFAKK 232
>gi|296423050|ref|XP_002841069.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637301|emb|CAZ85260.1| unnamed protein product [Tuber melanosporum]
Length = 164
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 66/127 (51%), Gaps = 11/127 (8%)
Query: 118 EAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPA---------PPAPMATAGVPEQ 168
EA K ++ A +E+ + + A + Q A + P V AP A +P++
Sbjct: 26 EAHKRRRLAERERKQALAALESQRHASTTAAPQVDSAKATKKSGGLKSTAPAAAPQIPDE 85
Query: 169 --PPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKL 226
PPN LFL NLP+ET L+ LF +F GFKEVR+VP R IAFVEFE + AK
Sbjct: 86 YLPPNSTLFLQNLPDETDSDTLTSLFGRFDGFKEVRMVPGRKGIAFVEFEQLEGAIGAKE 145
Query: 227 ALHGFKI 233
+ G +
Sbjct: 146 GIGGMTL 152
>gi|443898291|dbj|GAC75628.1| spliceosomal protein snRNP-U1A/U2B [Pseudozyma antarctica T-34]
Length = 344
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 114/250 (45%), Gaps = 61/250 (24%)
Query: 14 VYVTHISST----DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+YV +I +L++ LY++FS +G+++D+VA + MRGQAFV+F+ ++T A R+
Sbjct: 131 LYVKNIEGKIKKPELRRQLYSLFSAYGRVLDVVATRAPGMRGQAFVVFENPTTSTAAKRA 190
Query: 70 MQGFPFYDKPMRIQYS-----------KTDSDVISKI-----KGTFMERPKKVRKQPAPV 113
+ F FY K + I Y+ + D + ++ K T R +K + P
Sbjct: 191 LHSFVFYGKELHIDYATGAKSRAILRREIGHDAVHEMDLERSKTTVSRRGEKRTVESKPD 250
Query: 114 EDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQI 173
D E A +++A+L A ++ ++AL V
Sbjct: 251 SDDEE------DAGRKRAKLEDADEKVVKALDV--------------------------- 277
Query: 174 LFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHD--IAFVEFENEMQSAAAKLALHGF 231
PE +L LF + G+ EV + + A VEFE+ ++ AAK AL+
Sbjct: 278 ------PEAIEVGVLQALFARQEGYVEVTVSEQKAGTWTAKVEFEDAQKARAAKDALNNI 331
Query: 232 KITPTHAMKI 241
++ PT+++ +
Sbjct: 332 QLDPTYSLTL 341
>gi|403344910|gb|EJY71809.1| U2 small nuclear ribonucleoprotein b'' [Oxytricha trifallax]
gi|403363680|gb|EJY81589.1| U2 small nuclear ribonucleoprotein b'' [Oxytricha trifallax]
Length = 322
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 109/217 (50%), Gaps = 31/217 (14%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKT---LKMRGQAFVIFKEIASATNALRSMQGFPF 75
I + ++K +L+ +FSQ G++++I T K+RGQAF++F+E A L+ ++GF
Sbjct: 116 IKTDEMKITLFHLFSQVGEVIEINMRNTNNSQKLRGQAFIVFREQDMADRGLQELKGFNL 175
Query: 76 YDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQ 135
+ K + IQY+K +SDV K KG F + + R+Q +K + K +++ +L+
Sbjct: 176 FGKSIDIQYAKQNSDVTLKNKGVFDDSIRLNRRQ-------KRKQKDELKRKEKKEKLVI 228
Query: 136 AQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQF 195
A+QQ Q L+ ++ + Q A + NLP ++++L L +
Sbjct: 229 AEQQLKQQLNYKEMALKQSNAIA-----------------IDNLPGNYNQLLLQELLRNY 271
Query: 196 PGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFK 232
PG + L +H +A V F S AK+AL G
Sbjct: 272 PGVADYNLDVEKH-VATVHFHT---SNDAKVALAGLN 304
>gi|342879725|gb|EGU80962.1| hypothetical protein FOXB_08521 [Fusarium oxysporum Fo5176]
Length = 197
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 64/91 (70%), Gaps = 11/91 (12%)
Query: 14 VYVTHISST-----DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALR 68
+YVT++ S+ DL+ +LY +FS +G ++D+VALKT+KMRGQA ++F+++ SAT A+R
Sbjct: 30 LYVTNLPSSKIQKADLRTALYLLFSTYGPVLDVVALKTMKMRGQAHIVFRDVQSATQAMR 89
Query: 69 SMQGFPFYDKPMRIQYSKTDSDVISKIKGTF 99
S++G F + + + S+ ++K+ GTF
Sbjct: 90 SLEGQAFLGRDL------SKSNFVAKLDGTF 114
>gi|380746178|gb|AFE48022.1| sans fille, partial [Drosophila paranaensis]
Length = 84
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 57 FKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTF 99
FKEI SA+NALR+MQGFPFYDKPMRI YSK+DSD+++K+KGT+
Sbjct: 1 FKEIGSASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTY 43
>gi|380746086|gb|AFE47976.1| sans fille, partial [Drosophila leonis]
Length = 86
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 33/44 (75%), Positives = 41/44 (93%)
Query: 59 EIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMER 102
EI SA+NALR+MQGFPFYDKPMRI YSK+DSD+++K+KGT+ ER
Sbjct: 1 EIGSASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTYKER 44
>gi|343426466|emb|CBQ69996.1| related to U2 small nuclear ribonucleoprotein B [Sporisorium
reilianum SRZ2]
Length = 237
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 101/222 (45%), Gaps = 25/222 (11%)
Query: 23 DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRI 82
+L+ L+A+F+ +G+I+D+VA + MRGQAFV+F+ A +A R++ GF FY +P+ I
Sbjct: 35 ELRAQLHALFTTYGRILDVVATRAPHMRGQAFVVFESAGVAASAKRALDGFAFYGRPLHI 94
Query: 83 QYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQ 142
YS R R+ A + +KS R M A+++ +
Sbjct: 95 AYSTGGK-----------SRALLRRELGADAVHEMDLEKS---------RTMDARREAKR 134
Query: 143 ALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVR 202
AL + + ++ N+P E +L+ LF+ PGF +
Sbjct: 135 ALVSASQDDAAEQEDEEEGGRKRAKLAGEAVVQARNIPNTIEESVLTTLFSAHPGF--LA 192
Query: 203 LVPNRHD---IAFVEFENEMQSAAAKLALHGFKITPTHAMKI 241
L P + A + F+ + + AA+ AL G ++ P + + +
Sbjct: 193 LSPTKDAETWSATITFDTDENAHAAQSALLGVQLDPLYTLDL 234
>gi|378726083|gb|EHY52542.1| U2 small nuclear ribonucleoprotein B'' [Exophiala dermatitidis
NIH/UT8656]
Length = 200
Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 57/85 (67%), Gaps = 4/85 (4%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVAL----KTLKMRGQAFVIFKEIASATNALRSMQGFP 74
I+ +LK++LY +FS +G ++DIV K MRGQA +++++I ++T A+R++QGF
Sbjct: 34 INKNELKRALYMLFSTYGPVLDIVTTRVGSKCQNMRGQAHIVYRDIQTSTQAMRALQGFD 93
Query: 75 FYDKPMRIQYSKTDSDVISKIKGTF 99
+ K M I Y K S +I K++GTF
Sbjct: 94 LFGKEMVIVYGKGQSQIIPKLRGTF 118
>gi|2257544|dbj|BAA21437.1| spliceosomal protein [Schizosaccharomyces pombe]
Length = 216
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 74/125 (59%), Gaps = 10/125 (8%)
Query: 12 NFVYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNAL 67
N +YV + I+ DL+ +LY +FS +G ++DIVALKT KMRGQA V+F + ++A A+
Sbjct: 4 NTLYVNNLNDKINKNDLRTALYMLFSTYGTVVDIVALKTPKMRGQAHVVFFDPSAAAIAM 63
Query: 68 RSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMER-PKKVRKQPAPVE-----DPAEAKK 121
++++ F F+ K M+IQY+ + S +I +I R P K + A +E DP K+
Sbjct: 64 KALKNFIFFGKEMKIQYAHSKSKIIERIVAENDSRGPLKRLRDEADLEGNFFRDPVGVKR 123
Query: 122 SKKKA 126
K
Sbjct: 124 VIKSG 128
>gi|405118309|gb|AFR93083.1| hypothetical protein CNAG_06716 [Cryptococcus neoformans var.
grubii H99]
Length = 262
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 75/264 (28%), Positives = 128/264 (48%), Gaps = 45/264 (17%)
Query: 14 VYVTHISST----DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+YV+ + + +L++ LYA+FS +G+++D+VA K RGQAFV+F+E +AT ALR
Sbjct: 11 LYVSGLETKTKKPELRQQLYALFSPYGRVIDVVAKKHDGGRGQAFVVFEEQVAATAALRG 70
Query: 70 MQGFPFYDKPM-RIQYSKTDSDVISKIKGTFMERPKKVRKQPA---------PVEDPAEA 119
+ G FY+K + RI Y+K S T + P R+ A +D E
Sbjct: 71 LTGETFYNKELQRISYAKKPSYAT-----TARQDPSASREAAAIQAAKLTVSRAQD--EY 123
Query: 120 KKSKKKAAKEQA------RLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQI 173
++ +K+ E+A R ++ +Q++ A V+Q A M E+P +
Sbjct: 124 EQLEKERHDEEAGLLGEKRGLEDEQEERGAKRVKQE--DDEAMEIEMDEEEDEEKP---V 178
Query: 174 LFLTNLPEETSEMMLSMLFNQFPGFKEVRLV------------PNRHDIAF-VEFENEMQ 220
L +NLP E + ++ LF+Q+ GF + PN ++F F++
Sbjct: 179 LICSNLPAECNADIMGALFSQYQGFVSATQLPSSFTPPSSHPKPNPGAVSFHATFQSRDH 238
Query: 221 SAAAKLALHGFKITPTHAMKISFA 244
+A AK ++G+ + P AM + A
Sbjct: 239 AAKAKDEVNGYLMQPGWAMTATLA 262
>gi|294942132|ref|XP_002783392.1| U1 snRNP protein, putative [Perkinsus marinus ATCC 50983]
gi|239895847|gb|EER15188.1| U1 snRNP protein, putative [Perkinsus marinus ATCC 50983]
Length = 325
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 64/100 (64%), Gaps = 4/100 (4%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ +++ +LKKS+ + G ++D +A+++L+ RGQ FV+F +++A++
Sbjct: 52 LYINNLNDRVKPEELKKSILELCKSCGTVIDCIAMRSLRRRGQVFVVFSSKEESSSAMKK 111
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQ 109
+QG Y K MR+ Y+KT SD I+K +GT++ R K+ K+
Sbjct: 112 LQGHSLYSKNMRVSYAKTKSDAIAKKEGTYVRRDKEKLKE 151
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 170 PNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALH 229
PN+ LF+ NLP + L+ +F +PGF+ R++ R + F++F +E Q+ AK A
Sbjct: 251 PNKTLFVENLPPRCTPEKLTAVFKSYPGFEGTRVIAERQ-VGFIDFSSEFQATMAKNARG 309
Query: 230 GFKITPTHAMKISFAKK 246
+ + +KIS+A+K
Sbjct: 310 DYTME-GQLVKISYARK 325
>gi|19112363|ref|NP_595571.1| U2 snRNP-associated protein Msl1 (predicted) [Schizosaccharomyces
pombe 972h-]
gi|52783379|sp|Q7LL14.1|RU2B_SCHPO RecName: Full=Probable U2 small nuclear ribonucleoprotein B'';
Short=U2 snRNP B''
gi|2950496|emb|CAA17824.1| U2 snRNP-associated protein Msl1 (predicted) [Schizosaccharomyces
pombe]
Length = 111
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 62/88 (70%), Gaps = 4/88 (4%)
Query: 12 NFVYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNAL 67
N +YV + I+ DL+ +LY +FS +G ++DIVALKT KMRGQA V+F + ++A A+
Sbjct: 4 NTLYVNNLNDKINKNDLRTALYMLFSTYGTVVDIVALKTPKMRGQAHVVFFDPSAAAIAM 63
Query: 68 RSMQGFPFYDKPMRIQYSKTDSDVISKI 95
++++ F F+ K M+IQY+ + S +I +I
Sbjct: 64 KALKNFIFFGKEMKIQYAHSKSKIIERI 91
>gi|50551429|ref|XP_503188.1| YALI0D23375p [Yarrowia lipolytica]
gi|49649056|emb|CAG81388.1| YALI0D23375p [Yarrowia lipolytica CLIB122]
Length = 146
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 60/90 (66%), Gaps = 4/90 (4%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+YV +++ +DLK+ LY FS +G I+DIVA+K +MRGQA V+F +I ++ +AL
Sbjct: 33 LYVKNLTDKCTKSDLKRYLYMRFSSYGHILDIVAMKNERMRGQAHVVFNDIDASISALNG 92
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTF 99
+Q F K M I+Y+++ S I+K+ G+F
Sbjct: 93 LQKSEFMGKEMVIEYARSKSHAIAKLDGSF 122
>gi|448522653|ref|XP_003868744.1| U1A component of the U1 snRNP [Candida orthopsilosis Co 90-125]
gi|380353084|emb|CCG25840.1| U1A component of the U1 snRNP [Candida orthopsilosis]
Length = 229
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 104/211 (49%), Gaps = 26/211 (12%)
Query: 14 VYVTHIS---STDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSM 70
VY+ +I+ S + KS+ I Q + +I KTL+++GQAFV F+ I A+ A++S+
Sbjct: 9 VYINNINDKVSINKVKSVLTILLQQFRPTNISLAKTLRLKGQAFVTFETIDDASKAIQSL 68
Query: 71 QGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPV-EDPAEAKKSKKKAAKE 129
+ K + + ++K++SD + K ++R +KVR + + P KSK K K
Sbjct: 69 NNQELFSKCINVTFAKSNSDTLLDKKE--LKRIRKVRHDEHKIKKQPQTNSKSKTKITKS 126
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEET--SEMM 187
A ++Q Q + VQ PPN+IL L N+ + ++
Sbjct: 127 TAAGKNKTKKQSQ-VDVQSWKT----------------LPPNRILLLQNISSSSLITKEA 169
Query: 188 LSMLFNQFPGFKEVRLVPNRHDIAFVEFENE 218
+ F + GF+ R V RH ++F+EFENE
Sbjct: 170 IDEYFRSYAGFEMARFVATRH-LSFIEFENE 199
>gi|294655304|ref|XP_457426.2| DEHA2B10868p [Debaryomyces hansenii CBS767]
gi|199429852|emb|CAG85430.2| DEHA2B10868p [Debaryomyces hansenii CBS767]
Length = 116
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 52/79 (65%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
I S LK +LY FS +G I+DIV KMRGQA +IF + ATNA++S+QG PF++K
Sbjct: 34 IQSATLKHNLYVYFSTYGDIIDIVMKAQGKMRGQAHIIFANVMHATNAMKSLQGKPFFEK 93
Query: 79 PMRIQYSKTDSDVISKIKG 97
+ I+YS S +IS ++
Sbjct: 94 DLHIEYSLKKSKIISNLEN 112
>gi|154309069|ref|XP_001553869.1| hypothetical protein BC1G_07429 [Botryotinia fuckeliana B05.10]
Length = 157
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 63/102 (61%), Gaps = 4/102 (3%)
Query: 14 VYVTHISST----DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+YV ++ + L ++L +FS++G I++IVA LK +GQAF++F+++ SAT A+
Sbjct: 17 LYVNNLEESIKPAALIEALTELFSEYGTILEIVAKTNLKAKGQAFIVFEDVESATKAIED 76
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPA 111
+QGF + K MRI Y+KT SD K +G E R++ A
Sbjct: 77 IQGFELFGKEMRIAYAKTRSDASVKREGGHEELEVHKRRRLA 118
>gi|71023005|ref|XP_761732.1| hypothetical protein UM05585.1 [Ustilago maydis 521]
gi|46101218|gb|EAK86451.1| hypothetical protein UM05585.1 [Ustilago maydis 521]
Length = 303
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 62/239 (25%), Positives = 112/239 (46%), Gaps = 42/239 (17%)
Query: 23 DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRI 82
+L++ L A+FS +G+++D+VA + MRGQAFV+F+ ++ ++ A R ++GFPFY K + I
Sbjct: 88 ELRQQLLALFSTYGRVLDVVATRAPSMRGQAFVVFESVSFSSAAKRGLEGFPFYGKSLHI 147
Query: 83 QYS-KTDSDVISKIK---GTFMERPKKVRKQPAPVEDPAEAKK--SKKKAAKEQARLMQA 136
+YS T S + K + MER + + V +E + S++ A +++ +QA
Sbjct: 148 EYSTGTKSKALLKRELGHEALMERDWE--RSHTLVSRRSEKRDLLSQQDAEEDENTTVQA 205
Query: 137 QQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFP 196
Q + AT + +L +P +L LF
Sbjct: 206 QDDE--------------------ATRRKRAKLDKILLVAERIPATIQLHILQTLFQSHS 245
Query: 197 GFKEVRLVP-----------NRHD-IAFVEFENEMQSAAAKLALHGFKITPTHAMKISF 243
GF V ++P N D A + F+++ + AA+ L G ++ P + + + F
Sbjct: 246 GF--VDVIPADRTQQDDPKQNNDDWTAHIHFDSKAHAEAARNTLDGVQLDPLYKLDLHF 302
>gi|294868584|ref|XP_002765593.1| U1 small nuclear ribonucleoprotein A, putative [Perkinsus marinus
ATCC 50983]
gi|239865672|gb|EEQ98310.1| U1 small nuclear ribonucleoprotein A, putative [Perkinsus marinus
ATCC 50983]
Length = 400
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 62/96 (64%), Gaps = 4/96 (4%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ +++ +LKKS+ + G ++D +A+++L+ RGQ FV+F +++A++
Sbjct: 130 LYINNLNDRVKPEELKKSILELCKPCGTVIDCIAMRSLRRRGQVFVVFSSKKESSSAMKK 189
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKK 105
+QG Y K MR+ Y+KT SD I+K +GT++ R K+
Sbjct: 190 LQGHSLYSKNMRVSYAKTKSDAIAKKEGTYVRRDKE 225
>gi|238499763|ref|XP_002381116.1| small nuclear ribonucleoprotein, putative [Aspergillus flavus
NRRL3357]
gi|220692869|gb|EED49215.1| small nuclear ribonucleoprotein, putative [Aspergillus flavus
NRRL3357]
Length = 327
Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 65/119 (54%), Gaps = 19/119 (15%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
VYV ++ LK++L IFS++G ++DIVA LK +GQAF++F + SA+NA+
Sbjct: 17 VYVRNLEERVKVDQLKEALEEIFSEYGNVIDIVAKTNLKAKGQAFIVFDSVESASNAIDE 76
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAK 128
+ GF +DKPM + ++KT SD +G ED EA K ++ A K
Sbjct: 77 INGFELFDKPMVLDFAKTRSDATVLREGG---------------EDELEAHKRRRLAEK 120
>gi|401882121|gb|EJT46394.1| hypothetical protein A1Q1_05041 [Trichosporon asahii var. asahii
CBS 2479]
Length = 192
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 90/182 (49%), Gaps = 22/182 (12%)
Query: 23 DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRI 82
+L++ LYA+F+ +G+++DIVA K RGQAF++F+E A+AT ALR + FY++ M I
Sbjct: 23 ELRQQLYALFTPYGRVIDIVAKKHDGGRGQAFIVFEEQAAATAALRGLNDTQFYNRDMHI 82
Query: 83 QYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQ 142
Y+K S+ R+ P+ ++ + ++ +K Q Q ++++
Sbjct: 83 AYAKNPSNATL------------AREDPSKSKEARAIEAARVTISKAQGEYEQLEREKAG 130
Query: 143 ALSVQQPPVSQPAPPA----------PMATAGVPEQPPNQILFLTNLPEETSEMMLSMLF 192
++ ++ P + A M + N + +NLP E +E ++ LF
Sbjct: 131 GINSKRAPDADVEDRASKKAKTEDDDDMEIEMEDDDDVNVSVLCSNLPAECNEAIMGALF 190
Query: 193 NQ 194
+Q
Sbjct: 191 SQ 192
>gi|213407830|ref|XP_002174686.1| U2 small nuclear ribonucleoprotein B [Schizosaccharomyces
japonicus yFS275]
gi|212002733|gb|EEB08393.1| U2 small nuclear ribonucleoprotein B [Schizosaccharomyces
japonicus yFS275]
Length = 119
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 52/75 (69%)
Query: 23 DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRI 82
DL+ SLY +FS +G ++D+VALKT KMRGQA ++F + +A A +++ F F+ K M I
Sbjct: 19 DLRTSLYLLFSTYGTVLDVVALKTPKMRGQAHIVFHDQTAAAIAKKTLTNFMFFGKEMHI 78
Query: 83 QYSKTDSDVISKIKG 97
+Y+K+ S + ++ G
Sbjct: 79 EYAKSRSHALERVYG 93
>gi|388580808|gb|EIM21120.1| hypothetical protein WALSEDRAFT_69274 [Wallemia sebi CBS 633.66]
Length = 150
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 52/71 (73%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
I+ +L+ LY F +G+I+D+VALKT K+RGQA+++F ++SAT+A+R+ G FY+K
Sbjct: 17 INKQELRSQLYFRFQSYGRILDVVALKTDKLRGQAWIVFDVLSSATSAMRAENGSRFYNK 76
Query: 79 PMRIQYSKTDS 89
+ I Y+KT S
Sbjct: 77 AINIDYAKTTS 87
>gi|300175345|emb|CBK20656.2| unnamed protein product [Blastocystis hominis]
Length = 83
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/57 (59%), Positives = 46/57 (80%)
Query: 24 LKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPM 80
L++SLY +FSQFG ++D+VALKT +MRGQA+V F +AT+A+ S+QGF FY KPM
Sbjct: 25 LRRSLYMLFSQFGIVLDVVALKTERMRGQAWVSFLTPQNATDAMNSLQGFDFYGKPM 81
>gi|413956010|gb|AFW88659.1| hypothetical protein ZEAMMB73_209786 [Zea mays]
Length = 61
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/61 (59%), Positives = 46/61 (75%)
Query: 186 MMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAK 245
MML +LF Q+PGF+EVR++ + IAFVEFE++ QS A AL GFKITP + M IS+AK
Sbjct: 1 MMLQILFQQYPGFREVRMIEAKPGIAFVEFEDDGQSMVAMQALQGFKITPENPMAISYAK 60
Query: 246 K 246
K
Sbjct: 61 K 61
>gi|70933887|ref|XP_738251.1| small nuclear ribonucleoprotein (snRNP) [Plasmodium chabaudi
chabaudi]
gi|56514315|emb|CAH82541.1| small nuclear ribonucleoprotein (snRNP), putative [Plasmodium
chabaudi chabaudi]
Length = 107
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 54/91 (59%), Gaps = 2/91 (2%)
Query: 156 PPAPMATAGVPEQPPNQI-LFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVE 214
P +A E NQ LF+ NLP+E ++ L +LFNQ+PGF EVR +P R ++AF++
Sbjct: 18 PIKNYKSANNYENKVNQFTLFVQNLPDEINKNALEILFNQYPGFSEVRYIPGR-NVAFID 76
Query: 215 FENEMQSAAAKLALHGFKITPTHAMKISFAK 245
F + A L FKITP H MKIS++
Sbjct: 77 FNSYQNGEVAMNGLQSFKITPEHPMKISWSN 107
>gi|380746114|gb|AFE47990.1| sans fille, partial [Drosophila richardsoni]
Length = 86
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/115 (45%), Positives = 66/115 (57%), Gaps = 29/115 (25%)
Query: 63 ATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKS 122
A+NALR+MQGFPFYDKPMRI YSK+DSD+++K+KGT+ ERPKKV+ + K
Sbjct: 1 ASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTYKERPKKVKPPKPVPGVEEKKDKK 60
Query: 123 KKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLT 177
KK+++ E A P +Q EQPPNQILFLT
Sbjct: 61 KKQSSAENAN-----------------PNTQT------------EQPPNQILFLT 86
>gi|170090870|ref|XP_001876657.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164648150|gb|EDR12393.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 98
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 50/62 (80%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
++ +L+ L+A+F+ +G+I+DI+A K+ KMRGQAF++F ++A AT+A+R+ +G FYDK
Sbjct: 21 VNKDELRTQLFALFTTYGKIIDIIASKSQKMRGQAFLVFTDLAGATSAMRACEGMMFYDK 80
Query: 79 PM 80
PM
Sbjct: 81 PM 82
>gi|409079971|gb|EKM80332.1| hypothetical protein AGABI1DRAFT_73428, partial [Agaricus
bisporus var. burnettii JB137-S8]
Length = 160
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 57/72 (79%)
Query: 18 HISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYD 77
H++ +L+ LYA+F+ G+I+DIVA KT KMRGQAF++F ++A+AT A+R+ +G FYD
Sbjct: 17 HVNKEELRTQLYALFTTHGKIIDIVASKTQKMRGQAFLVFADLAAATAAMRACEGMIFYD 76
Query: 78 KPMRIQYSKTDS 89
KP+RI Y+K+ S
Sbjct: 77 KPLRIDYAKSKS 88
>gi|428171194|gb|EKX40113.1| hypothetical protein GUITHDRAFT_113851 [Guillardia theta CCMP2712]
Length = 336
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 105/229 (45%), Gaps = 35/229 (15%)
Query: 24 LKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIAS--------------------A 63
+++ LYA+FSQ+G+I+D+ ALKT KMRGQAFV F E+ + A
Sbjct: 102 MRELLYAVFSQYGKILDVRALKTQKMRGQAFVCFDELKAREQLEHVQGQSMLTPCACQDA 161
Query: 64 TNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSK 123
+A + GF F ++ + IQ++K+ S K GT+ E +++R + +KS
Sbjct: 162 VHAKEELNGFSFLNRTLVIQFAKSPSHAHLKKDGTYSEMMQQIRSEYWS-NHSLTIRKSV 220
Query: 124 KKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEET 183
+ A + +A SV Q + + + ++P +L +TN P
Sbjct: 221 ETALESKA----------NTSSVAQLNILEDDWLLSQHGYKLSKEPSRHLL-ITNCPANI 269
Query: 184 SEMMLSMLFNQFPGFKEVRLVPNRHDIAFV-EFENEMQSAAAKLALHGF 231
E + + QF G V + +AF+ +E + ++ A AL GF
Sbjct: 270 IEQDVLDVLGQFEGLISVEKISGA--VAFMAHYEEKDTASEATEALEGF 316
>gi|380746088|gb|AFE47977.1| sans fille, partial [Drosophila mainlandi]
Length = 78
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/40 (75%), Positives = 38/40 (95%)
Query: 63 ATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMER 102
A+NALR+MQGFPFYDKPMRI YSK+DSD+++K+KGT+ ER
Sbjct: 1 ASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTYKER 40
>gi|380746176|gb|AFE48021.1| sans fille, partial [Drosophila pachuca]
Length = 86
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/115 (45%), Positives = 66/115 (57%), Gaps = 29/115 (25%)
Query: 63 ATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKS 122
A+NALR+MQGFPFYDKPMRI YSK+DSD+++K+KGT+ ERPKKV+ + K
Sbjct: 1 ASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKMKGTYKERPKKVKPPKPVPGVEEKKDKK 60
Query: 123 KKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLT 177
KK+++ E A P +Q EQPPNQILFLT
Sbjct: 61 KKQSSAENAN-----------------PNTQT------------EQPPNQILFLT 86
>gi|380746112|gb|AFE47989.1| sans fille, partial [Drosophila repleta]
Length = 89
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/40 (75%), Positives = 38/40 (95%)
Query: 60 IASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTF 99
I SA+NALR+MQGFPFYDKPMRI YSK+DSD+++K+KGT+
Sbjct: 1 IGSASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTY 40
>gi|388856009|emb|CCF50386.1| related to U2 small nuclear ribonucleoprotein B [Ustilago hordei]
Length = 249
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 111/241 (46%), Gaps = 29/241 (12%)
Query: 14 VYVTHISS-----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALR 68
+YV +I +L++ L+++FS +G+++D+VA + MRGQAF++F+ + +T A R
Sbjct: 25 LYVKNIEGKVKKPAELRRQLHSLFSTYGRVLDVVATRAHGMRGQAFIVFENPSFSTAAKR 84
Query: 69 SMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDP--AEAKKSKKKA 126
+ F FY KP+ I+YS SK K + Q +E E+K+ +K+A
Sbjct: 85 GLHNFSFYSKPLHIEYSSG-----SKSKALLRKELGYEAVQELDLEKSRTTESKRGEKRA 139
Query: 127 AKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEM 186
+ A +Q+ Q GV I+ +N+P
Sbjct: 140 NQ------TAPEQEEQEEEEGSGRKRVKREEDEEEEDGV-------IVQASNVPGSIEGE 186
Query: 187 MLSMLFNQFPGFKEVRLVPNRHD----IAFVEFENEMQSAAAKLALHGFKITPTHAMKIS 242
++S LF++ G+ NR D A + F+ E + AA +L G +I P + +++S
Sbjct: 187 VISALFSRQSGYVGTDEGTNREDGETWTAEIRFDGEESAKAALESLQGVQIDPMYKLELS 246
Query: 243 F 243
Sbjct: 247 I 247
>gi|407923615|gb|EKG16684.1| hypothetical protein MPH_06138 [Macrophomina phaseolina MS6]
Length = 117
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 56/89 (62%), Gaps = 3/89 (3%)
Query: 161 ATAGVPEQ--PPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENE 218
A A +P++ PPN+ILF+ NLP+ LS +F +F GFKEVRLVP R IAFVE+E E
Sbjct: 29 AAAVIPDEYLPPNKILFVQNLPDGYDVEALSAIFGRFEGFKEVRLVPGRSGIAFVEYEAE 88
Query: 219 MQSAAAKLALHGFKITPTHA-MKISFAKK 246
+ +AK A G + MK+++ ++
Sbjct: 89 AGAISAKEATAGMALGDEGKPMKVTYQRQ 117
>gi|354547986|emb|CCE44721.1| hypothetical protein CPAR2_405250 [Candida parapsilosis]
Length = 228
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 104/211 (49%), Gaps = 27/211 (12%)
Query: 14 VYVTHIS---STDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSM 70
+Y+ +I+ S D KS+ A + +I KTLK++GQAFV F+ I A+ A+ S+
Sbjct: 9 IYINNINDKVSIDKVKSVLATLLSQHKPTNISLAKTLKLKGQAFVTFETIDDASKAIESL 68
Query: 71 QGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQ 130
+ K + + +++++SDV+ + +++ +K+R + ++ ++AK K +
Sbjct: 69 NNQEVFSKRISVTFARSESDVL--LDKNELKQIRKIRHEEHKIKKQSQAKN------KNK 120
Query: 131 ARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEE---TSEMM 187
+L ++ + + Q V PPN+IL L N+ T E +
Sbjct: 121 TKLSKSVLDKTTSTKKNQVDVD-----------SWKNLPPNRILLLQNISASLPITKETI 169
Query: 188 LSMLFNQFPGFKEVRLVPNRHDIAFVEFENE 218
S F + GF+ R V RH ++F+EFENE
Sbjct: 170 DSY-FQDYAGFEMARYVSVRH-LSFIEFENE 198
>gi|380091235|emb|CCC11092.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 232
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 91/181 (50%), Gaps = 26/181 (14%)
Query: 14 VYVTHISST----DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
VYV ++ LK++L IFS++G ++DIVA LK +GQAFV+F + SA A+
Sbjct: 12 VYVRNLEERVKPEPLKEALRTIFSEYGNVIDIVAKTNLKAKGQAFVVFDKPESAQAAIEE 71
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKA--- 126
+QGF ++KPM + +KT SD G E + R++ A+K KK+A
Sbjct: 72 LQGFELFEKPMLVALAKTRSDATVIQTGNEEEFDQHKRRR--------IAEKDKKRALEV 123
Query: 127 AKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMAT-----AGVPEQ--PPNQILFLTNL 179
A++Q RL ++ +Q + P AT A VP++ PPN+IL
Sbjct: 124 AEQQNRL----KRPLQGAAPDARPAKNQRGAGLKATGQGPAAVVPDEYLPPNRILSFRTC 179
Query: 180 P 180
P
Sbjct: 180 P 180
>gi|380746134|gb|AFE48000.1| sans fille, partial [Drosophila longicornis]
Length = 84
Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 51/113 (45%), Positives = 64/113 (56%), Gaps = 29/113 (25%)
Query: 65 NALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKK 124
NALR+MQGFPFYDKPMRI YSK+DSD+++K+KGT+ ERPKKV+ + K KK
Sbjct: 1 NALRTMQGFPFYDKPMRIAYSKSDSDIVAKMKGTYKERPKKVKPPKPVPGVEEKKDKKKK 60
Query: 125 KAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLT 177
+++ E A P +Q EQPPNQILFLT
Sbjct: 61 QSSAENAN-----------------PNTQT------------EQPPNQILFLT 84
>gi|70914065|ref|XP_731718.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56501874|emb|CAH85078.1| hypothetical protein PC301396.00.0 [Plasmodium chabaudi chabaudi]
Length = 90
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 48/69 (69%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
I+ DLK LY F +G ++D+V K+ K+RGQAFVIF IAS+T A ++++G PF +K
Sbjct: 21 INVNDLKYLLYEFFCPYGNVLDVVIKKSNKLRGQAFVIFSNIASSTLAYKNLKGKPFLNK 80
Query: 79 PMRIQYSKT 87
+ I Y+KT
Sbjct: 81 NININYAKT 89
>gi|238598482|ref|XP_002394620.1| hypothetical protein MPER_05461 [Moniliophthora perniciosa FA553]
gi|215463934|gb|EEB95550.1| hypothetical protein MPER_05461 [Moniliophthora perniciosa FA553]
Length = 191
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 91/187 (48%), Gaps = 12/187 (6%)
Query: 11 TNFVYVTHISSTDLKKSLYAIFSQFGQ----IMDIVALKTLKMRGQAFVIFKEIASATNA 66
N +YV +++ + K YA+ S IVA K KMRGQAF++F ++A AT A
Sbjct: 8 NNTLYVNNLNDK-VNKEEYALNSSPSSPPMAEYHIVASKNPKMRGQAFLVFTDLAGATAA 66
Query: 67 LRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDP-AEAKKSKKK 125
LR+ +G FYDKPMRI Y+KT S S+ + P V ++ A K+ ++
Sbjct: 67 LRACEGMLFYDKPMRIDYAKTKSYATSRREDANFVPPNSVNASAFLAQNGVASGKRQRED 126
Query: 126 AAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQP--PNQILFLTNLPEET 183
A E QA++++ + + P T +P Q P+ L TNLP+E
Sbjct: 127 DAGEGP---QAKKEKSDSDDEEMEIDDDDDVPT-QNTNVIPSQAQQPSARLLCTNLPQEV 182
Query: 184 SEMMLSM 190
++ S+
Sbjct: 183 TDRANSL 189
>gi|67539218|ref|XP_663383.1| hypothetical protein AN5779.2 [Aspergillus nidulans FGSC A4]
gi|40743682|gb|EAA62872.1| hypothetical protein AN5779.2 [Aspergillus nidulans FGSC A4]
Length = 127
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 44/52 (84%)
Query: 49 MRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFM 100
MRGQA V+FK+I ++T A+R++QGF F+ KPM+I Y+K SDVI++++GT++
Sbjct: 1 MRGQAHVVFKDIQASTQAMRALQGFEFFGKPMKIVYAKGSSDVIARLRGTYV 52
>gi|148693401|gb|EDL25348.1| mCG126247 [Mus musculus]
Length = 65
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 44/54 (81%), Gaps = 4/54 (7%)
Query: 14 VYVTHISST----DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASA 63
+Y+ +++ +LK+SLYA+FSQFG ++DIVALKT+KMR QAFVIFKE+ S+
Sbjct: 9 IYINNMNDKMKKEELKRSLYALFSQFGHVVDIVALKTMKMRAQAFVIFKELCSS 62
>gi|146420372|ref|XP_001486142.1| hypothetical protein PGUG_01813 [Meyerozyma guilliermondii ATCC
6260]
Length = 220
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 96/203 (47%), Gaps = 27/203 (13%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
+S L++ L +IF++FG+++ I A K +KM+GQAFV F + A+ +Q + + K
Sbjct: 13 VSVNTLRRLLESIFAKFGEVLQITANKNIKMKGQAFVTFANKLQSAAAMEKLQLYELFQK 72
Query: 79 PMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQ 138
P+ I Y+K +SD F+ V+K VE K+K K + L A +
Sbjct: 73 PIEISYAKKNSD------QYFI----AVKKDTETVE--------KRKNEKAKRELTLANK 114
Query: 139 QQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETS---EMMLSMLFNQF 195
+++Q +P + A P P+ E L + T+ +L F F
Sbjct: 115 RKVQN---DEPDFA--AAPEPIKKKIKIEDWKLLPPNNVLLLQNTTVDLNDVLQAFFGSF 169
Query: 196 PGFKEVRLVPNRHDIAFVEFENE 218
PGF R V +++F+EFE+E
Sbjct: 170 PGFINTRFVK-ALNLSFIEFESE 191
>gi|149240716|ref|XP_001526207.1| hypothetical protein LELG_02765 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146450330|gb|EDK44586.1| hypothetical protein LELG_02765 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 234
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 88/180 (48%), Gaps = 14/180 (7%)
Query: 40 DIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTF 99
+I+ KTL+++GQAF+ F+++ +A A+ + + K MR ++ ++D + K
Sbjct: 38 NIIVAKTLRLKGQAFITFQDVTNAQAAINQLNNKQLFSKSMRASFAHLENDAVLSPK--- 94
Query: 100 MERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAP 159
++ + R+ +E AK S+ K ++A + ++ A+ V
Sbjct: 95 EQQEQYSRRYTGKIERNKVAKLSRGKPGNQRA---STKTRKGDAV------VEGQREKNN 145
Query: 160 MATAGVPEQPPNQILFLTNLPE-ETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENE 218
+ + PPN IL L N+ + S+ + LF F GF+ R V R ++AF+EFENE
Sbjct: 146 IDVSMWKNLPPNHILLLQNISSTQVSKETIEALFTNFEGFENTRFVKVR-NLAFIEFENE 204
>gi|392576387|gb|EIW69518.1| hypothetical protein TREMEDRAFT_24129, partial [Tremella
mesenterica DSM 1558]
Length = 76
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 44/64 (68%)
Query: 17 THISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFY 76
T +L+ LYA+F+ FG+++D+VA K RGQAFV+F+E A+AT ALR + G PFY
Sbjct: 12 TKTKKIELRSQLYALFTPFGKVIDVVAKKHGGGRGQAFVVFEEQAAATAALRGLHGEPFY 71
Query: 77 DKPM 80
K +
Sbjct: 72 SKEL 75
>gi|156057559|ref|XP_001594703.1| hypothetical protein SS1G_04511 [Sclerotinia sclerotiorum 1980]
gi|154702296|gb|EDO02035.1| hypothetical protein SS1G_04511 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 144
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 41/51 (80%)
Query: 49 MRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTF 99
MRGQA +++++I +AT A+R++QGF F + M+IQY+K+ SD I+K+ GTF
Sbjct: 1 MRGQAHIVYRDIQTATQAMRALQGFEFLGREMKIQYAKSKSDTIAKLDGTF 51
>gi|154323986|ref|XP_001561307.1| hypothetical protein BC1G_00392 [Botryotinia fuckeliana B05.10]
Length = 142
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 40/51 (78%)
Query: 49 MRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTF 99
MRGQA V++++I +AT A+R++QGF F + M IQY+K+ SD I+K+ GTF
Sbjct: 1 MRGQAHVVYRDIQTATQAMRALQGFEFLGREMNIQYAKSKSDTIAKLDGTF 51
>gi|164659308|ref|XP_001730778.1| hypothetical protein MGL_1777 [Malassezia globosa CBS 7966]
gi|159104676|gb|EDP43564.1| hypothetical protein MGL_1777 [Malassezia globosa CBS 7966]
Length = 119
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 45/77 (58%)
Query: 169 PPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLAL 228
PPN+ILFL +P + L+ +F P +VR +P R DIAFVEF + S AA+ A
Sbjct: 42 PPNRILFLQQMPATVTHEELTRIFGHLPNLYQVRTIPGRTDIAFVEFHDIPSSVAAREAT 101
Query: 229 HGFKITPTHAMKISFAK 245
+G+ +K+SFA+
Sbjct: 102 NGYAFPTGEHLKVSFAR 118
>gi|357461607|ref|XP_003601085.1| U1 small nuclear ribonucleoprotein A [Medicago truncatula]
gi|355490133|gb|AES71336.1| U1 small nuclear ribonucleoprotein A [Medicago truncatula]
Length = 151
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/48 (58%), Positives = 38/48 (79%)
Query: 55 VIFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMER 102
V F E+ +A+NA+R MQ FPFY KPMRIQY+KT SD ++K +G+F+ R
Sbjct: 73 VCFSEVTAASNAVRQMQNFPFYVKPMRIQYAKTKSDCVAKEEGSFVPR 120
>gi|366988781|ref|XP_003674158.1| hypothetical protein NCAS_0A12190 [Naumovozyma castellii CBS 4309]
gi|342300021|emb|CCC67777.1| hypothetical protein NCAS_0A12190 [Naumovozyma castellii CBS 4309]
Length = 113
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 55/85 (64%), Gaps = 5/85 (5%)
Query: 12 NFVYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNAL 67
N +YV + I++ L+ +L+ +FS +G+++ VA+ K RGQAF+ + + A AL
Sbjct: 30 NTLYVNNLDEKINTKRLRTNLFLLFSIYGEVLK-VAISAKKQRGQAFITMRTVDEANLAL 88
Query: 68 RSMQGFPFYDKPMRIQYSKTDSDVI 92
S+ PF+DKP+ IQ+SKT+S +I
Sbjct: 89 ISLNNEPFFDKPLHIQFSKTNSYII 113
>gi|344301982|gb|EGW32287.1| hypothetical protein SPAPADRAFT_153008 [Spathaspora passalidarum
NRRL Y-27907]
Length = 135
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 49/78 (62%), Gaps = 5/78 (6%)
Query: 24 LKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83
LK +LY +FS FG +++I K G A V+F +I SAT ALRS+Q F+DKP+ I
Sbjct: 47 LKHNLYLLFSTFGDVIEIRIRK-----GFAHVLFGDIPSATVALRSLQSEEFFDKPLVIN 101
Query: 84 YSKTDSDVISKIKGTFME 101
YS +S VI+++ G E
Sbjct: 102 YSVNESKVITRLSGHIQE 119
>gi|406700831|gb|EKD03993.1| hypothetical protein A1Q2_01667 [Trichosporon asahii var. asahii
CBS 8904]
Length = 282
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 70/289 (24%), Positives = 112/289 (38%), Gaps = 100/289 (34%)
Query: 23 DLKKSLYAIFSQFGQI--------------------------MDIVALKTLKMRGQAFVI 56
+L++ LYA+F+ +G++ +DIVA K RGQAF++
Sbjct: 23 ELRQQLYALFTPYGRVGDMETNGCTRWADYSFGSTAIKLTGRIDIVAKKHDGGRGQAFIV 82
Query: 57 FKEIASATNALRSMQGFPFYDKPMRIQYSKTDSD----------------------VISK 94
F+E A+AT ALR + FY++ M I Y+K S+ ISK
Sbjct: 83 FEEQAAATAALRGLNDTQFYNRDMHIAYAKNPSNATLAREDPSKSKEARAIEAARVTISK 142
Query: 95 IKGTF--MERPK-----KVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQ 147
+G + +ER K R A VED ++ KKA E M+ + + ++V
Sbjct: 143 AQGEYEQLEREKAGGINSKRAPDADVED-----RASKKAKTEDDDDMEIEMEDDDDVNVS 197
Query: 148 QPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLF-NQFPGFKEVRLV-- 204
+ +NLP E +E ++ LF +++PGF +
Sbjct: 198 --------------------------VLCSNLPAECNEAIMGALFSHRYPGFTRAVEINA 231
Query: 205 ----------PNRHDIAF-VEFENEMQSAAAKLALHGFKITPTHAMKIS 242
PN F F + Q+ A L G+ + P M +S
Sbjct: 232 ATPLPPSHPKPNAGAKTFRATFASRAQAEAVIKPLSGYVMQPGWDMAVS 280
>gi|195443583|ref|XP_002069483.1| GK22267 [Drosophila willistoni]
gi|194165568|gb|EDW80469.1| GK22267 [Drosophila willistoni]
Length = 69
Score = 65.9 bits (159), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/34 (79%), Positives = 32/34 (94%)
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERP 103
MQGFPFYDKPMRI YSK+DSD+++K+KGTF ERP
Sbjct: 1 MQGFPFYDKPMRIAYSKSDSDIVAKLKGTFKERP 34
>gi|302406697|ref|XP_003001184.1| U1 small nuclear ribonucleoprotein A [Verticillium albo-atrum
VaMs.102]
gi|261359691|gb|EEY22119.1| U1 small nuclear ribonucleoprotein A [Verticillium albo-atrum
VaMs.102]
Length = 92
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 44/61 (72%)
Query: 24 LKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83
LK+SL IFS++G +++I+A LK +GQAF++F + SA NA+ +QGF +DK +++
Sbjct: 24 LKESLLQIFSEYGNVLEIIAKTNLKSKGQAFIVFDDADSAQNAIDEVQGFELFDKQCKLR 83
Query: 84 Y 84
+
Sbjct: 84 W 84
>gi|209878378|ref|XP_002140630.1| RNA recognition motif. family protein [Cryptosporidium muris RN66]
gi|209556236|gb|EEA06281.1| RNA recognition motif. family protein [Cryptosporidium muris RN66]
Length = 304
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 54/80 (67%), Gaps = 4/80 (5%)
Query: 14 VYVTHIS----STDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+YV +++ +T+L+K+L F FG+I++I +K+ RGQA++ FK+I +A+ AL +
Sbjct: 21 LYVNNLNDRVPTTELEKNLLQKFGNFGEIVNITCMKSFYRRGQAWITFKDIETASKALTA 80
Query: 70 MQGFPFYDKPMRIQYSKTDS 89
+QG ++KP+R ++ T S
Sbjct: 81 IQGVNMFNKPIRAAFAHTTS 100
>gi|432117207|gb|ELK37643.1| U1 small nuclear ribonucleoprotein A [Myotis davidii]
Length = 133
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 59/98 (60%), Gaps = 7/98 (7%)
Query: 9 CVTNFVYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASAT 64
C + VY+ + I +LKKSLY +FSQFGQI++I++ ++LKMR Q K A+
Sbjct: 38 CPSLTVYINNLNEKIRKNELKKSLYTLFSQFGQILNILS-QSLKMRAQHLSSSKRTAAPG 96
Query: 65 NALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMER 102
+ PF + Y+ TDSD+I+++KGTF+E+
Sbjct: 97 PCAPCRR--PFLQQTHAPPYANTDSDIIAEMKGTFVEQ 132
>gi|425868439|gb|AFY04349.1| sans fille, partial [Scathophaga stercoraria]
Length = 87
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/116 (43%), Positives = 61/116 (52%), Gaps = 29/116 (25%)
Query: 77 DKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQA 136
DKPMR +KTDSDV++K+KG+F E PKK++ + K KK E A
Sbjct: 1 DKPMRXAXAKTDSDVVAKMKGSFKEXPKKLKPPKPVXPVEDKKDKKKKSXNAENAN---- 56
Query: 137 QQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLF 192
P +Q EQPPNQILFLTNLPEET+EMMLSMLF
Sbjct: 57 -------------PNTQT------------EQPPNQILFLTNLPEETNEMMLSMLF 87
>gi|396465284|ref|XP_003837250.1| hypothetical protein LEMA_P034840.1 [Leptosphaeria maculans JN3]
gi|312213808|emb|CBX93810.1| hypothetical protein LEMA_P034840.1 [Leptosphaeria maculans JN3]
Length = 184
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 89/204 (43%), Gaps = 48/204 (23%)
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGT--FMERPKK------------------VRKQ 109
M GF Y K M++ +KT SD K K F E +K
Sbjct: 1 MNGFEMYGKVMKVTRAKTHSDETVKRKAAELFDEHKRKRLMLKGGLLPFSHPPQLLTSAH 60
Query: 110 PAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAP-PAPMATAGVPEQ 168
P P + K++++ A K QA P V+ P A A VP++
Sbjct: 61 TNPCLAPTDFKRAEEDA-KAQA----------------NPTVAAEKPRTAKTGAAAVPDE 103
Query: 169 --PPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKL 226
PN+ LFL N+P + E L+ +F +F GFKEVRLV R +AF EFENE + AK
Sbjct: 104 YVRPNKTLFLQNIPRDVDEETLTNVFERFEGFKEVRLVSVR-SVAFAEFENEQFAITAKE 162
Query: 227 ALHGFKITPTHA----MKISFAKK 246
A TP A MK+++ ++
Sbjct: 163 ATAN---TPIGAEGKPMKVTYQRQ 183
>gi|58263368|ref|XP_569094.1| hypothetical protein CNB00870 [Cryptococcus neoformans var.
neoformans JEC21]
gi|134108606|ref|XP_776956.1| hypothetical protein CNBB4840 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50259639|gb|EAL22309.1| hypothetical protein CNBB4840 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57223744|gb|AAW41787.1| hypothetical protein CNB00870 [Cryptococcus neoformans var.
neoformans JEC21]
Length = 282
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 42/56 (75%)
Query: 23 DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
+L++ LYA+FS +G+++D+VA K RGQAFV+F+E +AT ALR + G FY++
Sbjct: 42 ELRQQLYALFSPYGRVIDVVAKKHDGGRGQAFVVFEEQVAATAALRGLTGETFYNR 97
>gi|426198267|gb|EKV48193.1| hypothetical protein AGABI2DRAFT_56767, partial [Agaricus
bisporus var. bisporus H97]
Length = 76
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 50/63 (79%)
Query: 18 HISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYD 77
H++ +L+ LYA+F+ G+I+DIVA KT KMRGQAF++F ++A+AT A+R+ +G FYD
Sbjct: 13 HVNKEELRTQLYALFTTHGKIIDIVASKTQKMRGQAFLVFADLAAATAAMRACEGMIFYD 72
Query: 78 KPM 80
KP+
Sbjct: 73 KPL 75
>gi|255567158|ref|XP_002524560.1| RNA binding protein, putative [Ricinus communis]
gi|223536113|gb|EEF37768.1| RNA binding protein, putative [Ricinus communis]
Length = 929
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 108/238 (45%), Gaps = 34/238 (14%)
Query: 11 TNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSM 70
+ ++V ++S + ++ L F +FG+ +D VA + R AF+ FK A AL+++
Sbjct: 51 SRHLWVGNLSHSIMENDLTDHFVRFGE-LDSVAFQP--GRSYAFINFKNDDEAIAALKAL 107
Query: 71 QGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQ 130
QGFP P+RI+++K D + +++R + R A P + S+ +AA +
Sbjct: 108 QGFPLAGNPLRIEFAKADKSSVPSRDEDYLQRRDEQRS--AMKGSPFSQRDSRLRAASPE 165
Query: 131 ARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPE--ETSEMML 188
A + ++ S + P+++L++ P + EM+L
Sbjct: 166 P--FYADKSKVSDKSAE----------------------PSEVLWI-GFPALLKVDEMIL 200
Query: 189 SMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
F+ F +++ + P R AFV F N M + AK L G K+ + I FA+
Sbjct: 201 RKAFSPFGDIEKITVFPGR-SYAFVRFRNVMSACRAKETLQG-KLFGNPRVHICFARN 256
Score = 40.8 bits (94), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 169 PPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLAL 228
PP++ L++ NL E L+ F +F V P R AF+ F+N+ ++ AA AL
Sbjct: 49 PPSRHLWVGNLSHSIMENDLTDHFVRFGELDSVAFQPGR-SYAFINFKNDDEAIAALKAL 107
Query: 229 HGFKITPTHAMKISFAK 245
GF + + ++I FAK
Sbjct: 108 QGFPLA-GNPLRIEFAK 123
>gi|363748204|ref|XP_003644320.1| hypothetical protein Ecym_1261 [Eremothecium cymbalariae
DBVPG#7215]
gi|356887952|gb|AET37503.1| hypothetical protein Ecym_1261 [Eremothecium cymbalariae
DBVPG#7215]
Length = 113
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 46/66 (69%), Gaps = 2/66 (3%)
Query: 24 LKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83
LK +LY IFS FG+++ I + K+RGQAFV K + A A+ S++ PF+ KP++IQ
Sbjct: 47 LKSNLYLIFSTFGEVLKISM--SAKLRGQAFVTLKTVDEANLAMISLRDEPFFGKPLKIQ 104
Query: 84 YSKTDS 89
+SK+++
Sbjct: 105 FSKSET 110
>gi|209878161|ref|XP_002140522.1| RNA recognition motif. family protein [Cryptosporidium muris
RN66]
gi|209556128|gb|EEA06173.1| RNA recognition motif. family protein [Cryptosporidium muris
RN66]
Length = 103
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 43/73 (58%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
++ DL+ LY +F Q+G I+ I+ RGQAFV+F + SA AL ++ G K
Sbjct: 27 VNKKDLRVILYELFIQYGTILKIIVKGGCNNRGQAFVLFDNLNSAIEALNNVNGRVILGK 86
Query: 79 PMRIQYSKTDSDV 91
P+ I+Y+K DS V
Sbjct: 87 PIVIEYAKKDSKV 99
>gi|328866616|gb|EGG14999.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
fasciculatum]
Length = 505
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 105/237 (44%), Gaps = 35/237 (14%)
Query: 5 LAHICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMD---IVALKTLKMRGQAFVIFKEIA 61
L H +N +++ + +T + L FS +G +++ ++ + T RGQA V F E+
Sbjct: 233 LEHHKPSNNIFIKGLPTTFTQDQLNTFFSTYGIVLESKVLLDIATNASRGQALVRFSEVE 292
Query: 62 SATNALRSMQG--FPFYDKPMRIQYSKTDSD-VISKIKGTFMERPKKVRKQPAPVEDPAE 118
SAT A++++ FP DKP+ I+Y+ ++ D ++ + K T +P + P+P P+
Sbjct: 293 SATKAIKALDNYKFPGSDKPVIIKYADSEDDKILKRQKATSKRQPIRYSPYPSPNATPSL 352
Query: 119 AKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTN 178
+ + Q M +L Q P+ ++T P L++ N
Sbjct: 353 YSPAAYYS-----------QMAMPSLPTIQSPI--------LSTGSDPTN-----LYVYN 388
Query: 179 LPEETSEMMLSMLFNQFPGFKEVRLVPN-----RHDIAFVEFENEMQSAAAKLALHG 230
LP + + +L LF+ V++V + FV N S A +++G
Sbjct: 389 LPTDADDALLYRLFSPSGAIASVKVVKDPITQACRGFGFVRMVNLTDSLNAINSVNG 445
Score = 37.7 bits (86), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMD---IVALKTLKMRGQAFVIFKEIASATNALRSM 70
++V + +T ++L+A+FS FG+I +V L + RG FV +K+ ASA A++SM
Sbjct: 126 LFVNFLPNTITTETLHAMFSVFGEIESCRVMVDLVSGLSRGFGFVKYKDNASAQYAIQSM 185
Query: 71 QGFPFYDKPMRIQYSK 86
K + ++Y+
Sbjct: 186 NAAKIEKKTLLVRYAN 201
>gi|431838142|gb|ELK00074.1| U1 small nuclear ribonucleoprotein A [Pteropus alecto]
Length = 140
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 71/187 (37%), Gaps = 48/187 (25%)
Query: 49 MRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTD-SDVISKIKGTFMERPKKVR 107
MRGQAFVIF +++S T+ + FPFY KPM IQ + +D P +
Sbjct: 1 MRGQAFVIF-QVSSTTSVRHPTRSFPFYGKPMSIQACRGPATDDSGAPHRAPHSGPAFLN 59
Query: 108 KQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPE 167
P + P A +LM Q Q L E
Sbjct: 60 ATPGVILPPGLPPGQIPSVAMPPQQLMLGQMPPAQPLL---------------------E 98
Query: 168 QPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLA 227
P N IL L T E++ +MLFNQFP FK +Q+ A A
Sbjct: 99 NPQNHILLL------TYELLFAMLFNQFPAFK-------------------VQAGATPRA 133
Query: 228 LHGFKIT 234
L GFK+T
Sbjct: 134 LQGFKVT 140
>gi|237829859|ref|XP_002364227.1| small nuclear ribonucleoprotein U1A, putative [Toxoplasma gondii
ME49]
gi|211961891|gb|EEA97086.1| small nuclear ribonucleoprotein U1A, putative [Toxoplasma gondii
ME49]
gi|221487300|gb|EEE25532.1| small nuclear ribonucleoprotein U1A, putative [Toxoplasma gondii
GT1]
gi|221507093|gb|EEE32697.1| small nuclear ribonucleoprotein U1A, putative [Toxoplasma gondii
VEG]
Length = 385
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 52/77 (67%), Gaps = 2/77 (2%)
Query: 170 PNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALH 229
PN++LFL NLPE+ + L LF++ G EVR V R +AFVE++NEM +A A AL
Sbjct: 311 PNKVLFLENLPEDATMEGLVSLFSKHAGMIEVRPVLWRR-VAFVEYDNEMLAANAMNALQ 369
Query: 230 GFKITPTHAMKISFAKK 246
G+ + + ++KI++A++
Sbjct: 370 GYNMNGS-SIKITYARR 385
>gi|406603930|emb|CCH44563.1| U1 small nuclear ribonucleoprotein [Wickerhamomyces ciferrii]
Length = 112
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 47/73 (64%)
Query: 24 LKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83
LK +LY +F+ FG +++I K+RGQAF++F + SA A+RS+QG F+ K ++
Sbjct: 37 LKHNLYILFTTFGDVLEINIPGNNKLRGQAFIVFTDPKSANIAMRSLQGDEFFGKKLKFD 96
Query: 84 YSKTDSDVISKIK 96
+S +S V+ ++
Sbjct: 97 FSHEESKVLQSLQ 109
>gi|443925378|gb|ELU44231.1| RNA recognition motif domain-containing protein [Rhizoctonia solani
AG-1 IA]
Length = 154
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 39/57 (68%)
Query: 24 LKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPM 80
+K +L ++F +G+I+D+VA L+MRGQAFV F+ A AL+ ++ FP Y KPM
Sbjct: 70 MKSTLRSLFKGYGKILDVVAHGNLRMRGQAFVSFESKEVAAKALKEVKNFPLYAKPM 126
>gi|340052814|emb|CCC47100.1| putative U2 small nuclear ribonucleoprotein B [Trypanosoma vivax
Y486]
Length = 114
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 48/71 (67%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
+S+ +++++LY +QFG ++D++ + ++ GQAFV+F ++A+ATNA R + FY +
Sbjct: 17 VSTEEMRRALYLYCTQFGPVLDVLYRNSSRLYGQAFVVFTDVATATNARRELHERCFYGR 76
Query: 79 PMRIQYSKTDS 89
++ Y+K S
Sbjct: 77 TVQAFYAKRQS 87
>gi|45184845|ref|NP_982563.1| AAR022Wp [Ashbya gossypii ATCC 10895]
gi|44980454|gb|AAS50387.1| AAR022Wp [Ashbya gossypii ATCC 10895]
gi|374105762|gb|AEY94673.1| FAAR022Wp [Ashbya gossypii FDAG1]
Length = 114
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 52/79 (65%), Gaps = 6/79 (7%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+++++ + L+ +LY +FS FG+++ I + K+RGQAFV+ + A A+ S
Sbjct: 34 LYISNLNDQVKISTLRTNLYLLFSTFGEVLRIAM--SPKLRGQAFVVLSTVDEANLAMIS 91
Query: 70 MQGFPFYDKPMRIQYSKTD 88
++ F+ KP+RIQ+SK+D
Sbjct: 92 LKDESFFGKPLRIQFSKSD 110
>gi|380746180|gb|AFE48023.1| sans fille, partial [Drosophila propachuca]
Length = 62
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/31 (74%), Positives = 29/31 (93%)
Query: 72 GFPFYDKPMRIQYSKTDSDVISKIKGTFMER 102
GFPFYDKPMRI YSK+DSD+++K+KGT+ ER
Sbjct: 1 GFPFYDKPMRIAYSKSDSDIVAKMKGTYKER 31
>gi|440793172|gb|ELR14364.1| SNF, putative [Acanthamoeba castellanii str. Neff]
Length = 65
Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/43 (58%), Positives = 37/43 (86%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIA 61
+ +L+K+LY +FSQ+G ++DIVA K+LK+RGQAFVIF++IA
Sbjct: 20 VKRDELRKALYGLFSQYGTVLDIVAQKSLKLRGQAFVIFRDIA 62
>gi|403223443|dbj|BAM41574.1| U1 snRNP protein [Theileria orientalis strain Shintoku]
Length = 418
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 57/99 (57%), Gaps = 9/99 (9%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
+++ ++ +L +FS + ++D++ +K+ RGQA+VIF I +A A+ GF Y
Sbjct: 123 VNTKVMENALRELFSAY-PLLDVILMKSFWRRGQAWVIFSTIENAAKAMFEFNGFLLYGH 181
Query: 79 PMRIQYSKTDSDVISKIKGTFME--------RPKKVRKQ 109
M I Y+ S ++SK+ GT++ +P+++R++
Sbjct: 182 AMHINYALEKSYLVSKMNGTYVPSDRKGVKMKPRRIRQR 220
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 37/55 (67%), Gaps = 3/55 (5%)
Query: 171 NQILFLTNLPEETSEMMLSMLFNQFPGFKEVR-LVPNRHDIAFVEFENEMQSAAA 224
N+ LF+ NLPE + + + +FN+ PGF E R ++P R +AF++F+++ S+ A
Sbjct: 349 NKTLFVENLPENVTNLDVVNVFNKMPGFVEARVIIPRR--VAFIDFDSDNSSSYA 401
>gi|296005401|ref|XP_002809024.1| RRM containing cyclophilin [Plasmodium falciparum 3D7]
gi|225631965|emb|CAX64305.1| RRM containing cyclophilin [Plasmodium falciparum 3D7]
Length = 125
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Query: 11 TNFVYVTHISSTDLKKSLYAIFSQFGQIMDI---VALKTLKMRGQAFVIFKEIASATNAL 67
T+ ++V I T +KSLY IFS FG I +I + + T K RG AFV + E+ A +AL
Sbjct: 7 TDILFVGGIDETIDEKSLYDIFSSFGDIRNIEVPLNMTTKKNRGFAFVEYVEVDDAKHAL 66
Query: 68 RSMQGFPFYDKPMRIQYSKT 87
+M F K + + YSKT
Sbjct: 67 YNMNNFELNGKRIHVNYSKT 86
>gi|260944630|ref|XP_002616613.1| hypothetical protein CLUG_03854 [Clavispora lusitaniae ATCC 42720]
gi|238850262|gb|EEQ39726.1| hypothetical protein CLUG_03854 [Clavispora lusitaniae ATCC 42720]
Length = 113
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
I+ T LK ++Y +FS +G++ DI +K+RGQA VI +A+ L+++ G P + K
Sbjct: 34 INRTLLKHNIYILFSTYGEVWDI----NMKLRGQAHVIMDSKETASVCLKALSGIPMFGK 89
Query: 79 PMRIQYSKTDS 89
+RI +SK S
Sbjct: 90 HLRIDFSKNKS 100
>gi|72387031|ref|XP_843940.1| U2 small nuclear ribonucleoprotein B [Trypanosoma brucei TREU927]
gi|62175534|gb|AAX69673.1| U2 small nuclear ribonucleoprotein B, putative [Trypanosoma
brucei]
gi|70800472|gb|AAZ10381.1| U2 small nuclear ribonucleoprotein B, putative [Trypanosoma
brucei brucei strain 927/4 GUTat10.1]
gi|261327055|emb|CBH10031.1| U2 small nuclear ribonucleoprotein B, putative [Trypanosoma
brucei gambiense DAL972]
Length = 117
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 46/70 (65%)
Query: 20 SSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKP 79
S+ ++++ LY +QFG ++D++ K+ M GQAFV+F ++A+ATNA R + FY +
Sbjct: 18 SAEEVRRLLYLYCTQFGPVIDVLYCKSKSMYGQAFVVFTDVATATNARRELHERQFYGRI 77
Query: 80 MRIQYSKTDS 89
++ Y+K S
Sbjct: 78 IQAFYAKRQS 87
>gi|118399788|ref|XP_001032218.1| polypyrimidine tract-binding protein [Tetrahymena thermophila]
gi|89286557|gb|EAR84555.1| polypyrimidine tract-binding protein [Tetrahymena thermophila
SB210]
Length = 829
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 100/238 (42%), Gaps = 53/238 (22%)
Query: 14 VYVTHISSTDLKKS-LYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQG 72
++V H+ DLK S LY +FS +G I+ I+ +K + QA + F+E + AT A ++
Sbjct: 506 LFVRHLDFPDLKISMLYNLFSNYGNIVKIIFMK---QKRQALIEFEETSQATAAKENLNN 562
Query: 73 FPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQAR 132
P+Y+ ++I YSK D + K KK EQ +
Sbjct: 563 LPYYNAQIKIDYSKYDQIDLQK-------------------------KKLHSGENNEQEQ 597
Query: 133 LMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLF 192
++Q QQ + + G+P+ P L ++N+ +E + L F
Sbjct: 598 VLQIPQQCFRYKN----------------KKGIPQYAPKSTLHVSNIKKEFFDYNLIQDF 641
Query: 193 NQFPG--FKEVRLVPN-RHDIAFVEFENEMQSAAAKLALHGFKITPTHA--MKISFAK 245
G K ++L+PN + + ++FE A + F TP H + ISF K
Sbjct: 642 FSSSGAKIKMLKLIPNEKKQMCLIQFET---LDDALRVISTFHDTPFHGRNLCISFTK 696
>gi|380746122|gb|AFE47994.1| sans fille, partial [Drosophila wassermani]
Length = 77
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 56/106 (52%), Gaps = 29/106 (27%)
Query: 78 KPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQ 137
KPMRI YSK+DSD+++K+KGT+ ERPKKV+ + A+E+ + Q
Sbjct: 1 KPMRIAYSKSDSDIVAKLKGTYKERPKKVKPPKPAL------------GAEEKKDKKKKQ 48
Query: 138 QQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEET 183
+ P +Q EQPPNQILFLTNLPEET
Sbjct: 49 TS-----TENSNPNTQ------------TEQPPNQILFLTNLPEET 77
>gi|150863925|ref|XP_001382572.2| hypothetical protein PICST_35154 [Scheffersomyces stipitis CBS
6054]
gi|149385181|gb|ABN64543.2| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 124
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 24 LKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83
+K +LY +FS +G I+DI K RGQA +IF +A A+ AL+ +Q F+DK + I
Sbjct: 48 IKHNLYLLFSTYGDIIDIKNNK----RGQAHIIFTNVAGASLALKCLQDEEFFDKKLVIN 103
Query: 84 YSKTDSDVISK 94
Y+ +S ++ +
Sbjct: 104 YAIKESKIVER 114
>gi|389586143|dbj|GAB68872.1| cyclophilin E [Plasmodium cynomolgi strain B]
Length = 126
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 11 TNFVYVTHISSTDLKKSLYAIFSQFGQIMDI---VALKTLKMRGQAFVIFKEIASATNAL 67
T +YV I T +KSLY IFS FG + +I + L T K RG AFV + E A +AL
Sbjct: 7 TEVLYVGGIDETIDEKSLYDIFSSFGDVRNIEVPINLVTKKNRGFAFVEYVEKDDAKHAL 66
Query: 68 RSMQGFPFYDKPMRIQYSKT 87
+M F K + + YSK
Sbjct: 67 YNMNNFELNGKKIHVNYSKN 86
>gi|40950447|gb|AAR97857.1| sans fille [Drosophila arizonae]
Length = 76
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 56/105 (53%), Gaps = 29/105 (27%)
Query: 76 YDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQ 135
YDKPMRI YSK+DSD+++K+KGT+ ERPKKV+ + K KK+++ E A
Sbjct: 1 YDKPMRIAYSKSDSDIVAKLKGTYKERPKKVKPPKPVPGVEEKKDKKKKQSSAENAN--- 57
Query: 136 AQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLP 180
P +Q EQPPNQILFLTNLP
Sbjct: 58 --------------PNTQ------------TEQPPNQILFLTNLP 76
>gi|241949525|ref|XP_002417485.1| U2 small nuclear ribonucleoprotein B, putative [Candida
dubliniensis CD36]
gi|223640823|emb|CAX45138.1| U2 small nuclear ribonucleoprotein B, putative [Candida
dubliniensis CD36]
Length = 131
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 5/70 (7%)
Query: 24 LKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83
L +LY +FS FG I+ I G AF+IF + SAT ALR+++ F+DKP+ +
Sbjct: 48 LLHNLYLLFSAFGDIISINL-----HNGYAFIIFTNLNSATLALRNLKNQDFFDKPLVLN 102
Query: 84 YSKTDSDVIS 93
YS +S VIS
Sbjct: 103 YSVKESKVIS 112
>gi|255728035|ref|XP_002548943.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240133259|gb|EER32815.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 142
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 50/92 (54%), Gaps = 11/92 (11%)
Query: 27 SLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSK 86
+LY + S FG ++ I LK RG AFVIF SA+ ALR++Q F+DKP+ + Y+
Sbjct: 52 NLYLLLSAFGDVISI----NLK-RGFAFVIFASTNSASLALRTLQNEEFFDKPLVLNYAV 106
Query: 87 TDSDVISKIKGTFMERPKKVRKQPAPVEDPAE 118
+S +IS+ K + R + VE E
Sbjct: 107 KESKLISRAKNEIL------RNELGNVESKGE 132
>gi|321448102|gb|EFX61317.1| hypothetical protein DAPPUDRAFT_69919 [Daphnia pulex]
Length = 77
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 48/77 (62%), Gaps = 3/77 (3%)
Query: 170 PNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALH 229
PN ILF L + + +L+ +F +FPG ++VRL P + AF+E+E+E ++ A ALH
Sbjct: 4 PNHILFCQGLDQTITAEILTEVFMRFPGLRDVRLAPK--NFAFIEYEDEFKAGNALSALH 61
Query: 230 GFKITPTHAMKISFAKK 246
++ +K+S+AKK
Sbjct: 62 DTQVGNI-TLKLSYAKK 77
>gi|340503108|gb|EGR29728.1| u1 small nuclear ribonucleoprotein a, putative [Ichthyophthirius
multifiliis]
Length = 149
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 54/95 (56%), Gaps = 5/95 (5%)
Query: 11 TNFVYVTHISST----DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNA 66
N +YV +++ +L L IF +FG ++ I A + +KMRGQAF+ F++I +A A
Sbjct: 25 NNTLYVNNLNENVKINELIPELKRIFEEFGDVIQIKAKRNIKMRGQAFITFQDIPTAEKA 84
Query: 67 LRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFME 101
L + QG Y K M + +K + ++ + K F+E
Sbjct: 85 LENCQGRKLYGKQMEL-VNKMEVRLVPQKKVAFVE 118
>gi|190345684|gb|EDK37611.2| hypothetical protein PGUG_01709 [Meyerozyma guilliermondii ATCC
6260]
Length = 141
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Query: 24 LKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83
LK +LY +FS +G ++DI+ KMRGQA +I + + SA++A + F+ K M +
Sbjct: 41 LKHNLYLLFSTYGDVIDIIIRP--KMRGQAHIILESVTSASSAKAGLDKRRFFSKEMSVN 98
Query: 84 YSKTDSDVISK 94
Y+KT S ++++
Sbjct: 99 YAKTKSRIVAR 109
>gi|156102883|ref|XP_001617134.1| cyclophilin E [Plasmodium vivax Sal-1]
gi|148806008|gb|EDL47407.1| cyclophilin E, putative [Plasmodium vivax]
Length = 124
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 5 LAHICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDI---VALKTLKMRGQAFVIFKEIA 61
++ T +YV I T +KSLY IFS FG + +I + L T K RG AFV + E
Sbjct: 1 MSDDNATEVLYVGGIDETIDEKSLYDIFSSFGDVRNIEVPINLVTKKNRGFAFVEYVEKD 60
Query: 62 SATNALRSMQGFPFYDKPMRIQYSKT 87
A +AL +M F K + + YSK
Sbjct: 61 DAKHALYNMNNFELNGKKIYVNYSKN 86
>gi|66363386|ref|XP_628659.1| U1 small nuclear ribonucleoprotein A, rrm domain [Cryptosporidium
parvum Iowa II]
gi|46229837|gb|EAK90655.1| U1 small nuclear ribonucleoprotein A, rrm domain [Cryptosporidium
parvum Iowa II]
Length = 122
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 41/71 (57%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
I+ DLK L+ +F QFG I I RGQAF++F+++ A NA S+ G K
Sbjct: 28 INKKDLKILLFELFIQFGLIDKITIRGGSPYRGQAFILFQDLNCAINAKNSINGMNVLGK 87
Query: 79 PMRIQYSKTDS 89
P+ I+Y+K +S
Sbjct: 88 PIHIEYAKENS 98
>gi|119568195|gb|EAW47810.1| hCG22524, isoform CRA_a [Homo sapiens]
Length = 91
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 35/57 (61%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPF 75
I +LK+ LYA+FSQFG ++D VALKT+KMRG+A + A S + F F
Sbjct: 18 IKKEELKRCLYALFSQFGHVVDFVALKTMKMRGRALSYLRNWAHPQMLRDSHKDFHF 74
>gi|68465088|ref|XP_723243.1| hypothetical protein CaO19.12210 [Candida albicans SC5314]
gi|46445270|gb|EAL04539.1| hypothetical protein CaO19.12210 [Candida albicans SC5314]
Length = 131
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 5/80 (6%)
Query: 17 THISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFY 76
T I+ L +LY +FS FG I+ I G AF+IF + SAT ALR+++ F+
Sbjct: 41 TKINKKILLHNLYLLFSAFGDIISINL-----QNGFAFIIFSNLNSATLALRNLKNQDFF 95
Query: 77 DKPMRIQYSKTDSDVISKIK 96
DKP+ + Y+ +S VIS+ K
Sbjct: 96 DKPLVLNYAVKESKVISQEK 115
>gi|238878692|gb|EEQ42330.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 131
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 5/80 (6%)
Query: 17 THISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFY 76
T I+ L +LY +FS FG I+ I G AF+IF + SAT ALR+++ F+
Sbjct: 41 TKINKKILLHNLYLLFSAFGDIISINL-----QNGFAFIIFSNLNSATLALRNLKNQDFF 95
Query: 77 DKPMRIQYSKTDSDVISKIK 96
DKP+ + Y+ +S VIS+ K
Sbjct: 96 DKPLVLNYAVKESKVISQEK 115
>gi|71026823|ref|XP_763055.1| hypothetical protein [Theileria parva strain Muguga]
gi|68350008|gb|EAN30772.1| hypothetical protein TP03_0036 [Theileria parva]
Length = 288
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 42/80 (52%), Gaps = 15/80 (18%)
Query: 44 LKTLKMRGQAFVIFKEIASATNALRSMQG---------------FPFYDKPMRIQYSKTD 88
+K+ RGQA+VI+ I SAT AL+ +QG + MRI Y+
Sbjct: 1 MKSFWRRGQAWVIYDNINSATEALKELQGTLHTISTLFLHLFYRHKLFGHVMRINYALEK 60
Query: 89 SDVISKIKGTFMERPKKVRK 108
SDV+SK GTF+ RPK +K
Sbjct: 61 SDVVSKADGTFVPRPKGPKK 80
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 18/101 (17%)
Query: 162 TAGVPEQPP----NQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFEN 217
+ G + P N++LF+ +LP+ + ++ LF+ PGF E +L+ ++H +AF++F+N
Sbjct: 189 SGGFSDDPSITRRNRVLFVEDLPDGIAHEDVNNLFHHMPGFVETKLINSKH-VAFIDFDN 247
Query: 218 EMQSAAA--------KLALHGF-----KITPTHAMKISFAK 245
E S A LH F K+ +KISFAK
Sbjct: 248 EFNSNYALQRILPISYTFLHIFYILQGKLLNGQPIKISFAK 288
>gi|146420161|ref|XP_001486038.1| hypothetical protein PGUG_01709 [Meyerozyma guilliermondii ATCC
6260]
Length = 141
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 44/71 (61%), Gaps = 2/71 (2%)
Query: 24 LKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83
LK +LY +FS +G ++DI+ KMRGQA +I + + SA +A + F+ K M +
Sbjct: 41 LKHNLYLLFSTYGDVIDIIIRP--KMRGQAHIILESVTSALSAKAGLDKRRFFSKEMSVN 98
Query: 84 YSKTDSDVISK 94
Y+KT S ++++
Sbjct: 99 YAKTKSRIVAR 109
>gi|68531995|ref|XP_723677.1| peptidyl-prolyl cis-trans isomerase E [Plasmodium yoelii yoelii
17XNL]
gi|23478052|gb|EAA15242.1| peptidyl-prolyl cis-trans isomerase E-related [Plasmodium yoelii
yoelii]
Length = 127
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 10 VTNFVYVTHISSTDLKKSLYAIFSQFGQIMDI---VALKTLKMRGQAFVIFKEIASATNA 66
T +YV I T KK LY IFS FG I +I + L T K RG AF+ + E A +A
Sbjct: 5 TTEILYVGGIHETIDKKCLYDIFSSFGDIRNIEIPMNLVTNKNRGFAFIEYVEKNDAKHA 64
Query: 67 LRSMQGFPFYDKPMRIQYSKT 87
L +M F K + + YS+T
Sbjct: 65 LYNMNNFELNGKIITVNYSRT 85
>gi|71416262|ref|XP_810168.1| U2 small nuclear ribonucleoprotein B [Trypanosoma cruzi strain CL
Brener]
gi|71662225|ref|XP_818122.1| U2 small nuclear ribonucleoprotein B [Trypanosoma cruzi strain CL
Brener]
gi|70874662|gb|EAN88317.1| U2 small nuclear ribonucleoprotein B, putative [Trypanosoma
cruzi]
gi|70883355|gb|EAN96271.1| U2 small nuclear ribonucleoprotein B, putative [Trypanosoma
cruzi]
Length = 114
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 46/71 (64%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
+S +++++LY +QFG ++++ K+ M GQAFV+F ++A+AT+A R + FY +
Sbjct: 17 VSEKEMRRALYLYCTQFGPVLEVSYRKSRDMYGQAFVVFSDVATATSARRELNERQFYGR 76
Query: 79 PMRIQYSKTDS 89
++ Y+K S
Sbjct: 77 LVQAFYAKRQS 87
>gi|123430856|ref|XP_001307983.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121889640|gb|EAX95053.1| hypothetical protein TVAG_428560 [Trichomonas vaginalis G3]
Length = 186
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 23 DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRI 82
DLK++LY +FS +++I A K + RGQA+V F + SA ++ FPF K ++I
Sbjct: 24 DLKRNLYYLFSSVAPVVEINARKG-QSRGQAWVSFPNLESAEIIMKQFNNFPFLGKALQI 82
Query: 83 QYSKTDSDVISKIKGTFMER 102
+YSK S + + F R
Sbjct: 83 EYSKNPSKSLEEFYNAFSTR 102
>gi|50304193|ref|XP_452046.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641178|emb|CAH02439.1| KLLA0B11594p [Kluyveromyces lactis]
Length = 114
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 50/79 (63%), Gaps = 6/79 (7%)
Query: 12 NFVYVTHISST----DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNAL 67
N VYV +++ +++SLY +F+ +G+++ + T K RGQAF+ FK + A AL
Sbjct: 32 NTVYVKNLNDQIKIQTVRESLYMLFATYGEVIKVSM--TPKQRGQAFITFKSVDEANLAL 89
Query: 68 RSMQGFPFYDKPMRIQYSK 86
S++ F++KP+ +Q+SK
Sbjct: 90 LSLKDELFFNKPLVLQFSK 108
>gi|68464713|ref|XP_723434.1| hypothetical protein CaO19.4748 [Candida albicans SC5314]
gi|46445468|gb|EAL04736.1| hypothetical protein CaO19.4748 [Candida albicans SC5314]
Length = 131
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 46/80 (57%), Gaps = 5/80 (6%)
Query: 17 THISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFY 76
T I+ L +LY +FS FG I+ I G AF+IF + SAT ALR+++ F+
Sbjct: 41 TKINKKILLHNLYLLFSAFGDIISINL-----QNGFAFIIFSNLNSATLALRNLKNQDFF 95
Query: 77 DKPMRIQYSKTDSDVISKIK 96
DKP+ + Y+ +S IS+ K
Sbjct: 96 DKPLVLNYAVKESKAISQEK 115
>gi|194708472|gb|ACF88320.1| unknown [Zea mays]
Length = 231
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 56/104 (53%), Gaps = 6/104 (5%)
Query: 149 PPV--SQPAP-PAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLV- 204
PPV + PAP P A A V + PP LF+ NL + E L LF+ PGFK+++++
Sbjct: 106 PPVAMTSPAPVTGPTAYAPVQDNPPCNTLFIGNLGDTVVEEELRSLFSVQPGFKQMKVLR 165
Query: 205 PNRHDIAFVEFENEMQSAAAKLALHGFKI--TPTHAMKISFAKK 246
+R+ + F+EFE+ + + L G I + M+I F+K
Sbjct: 166 QDRNTVCFIEFEDVNAATSVHQTLQGAVIPSSGRGGMRIQFSKN 209
>gi|448104887|ref|XP_004200362.1| Piso0_002948 [Millerozyma farinosa CBS 7064]
gi|448108043|ref|XP_004200993.1| Piso0_002948 [Millerozyma farinosa CBS 7064]
gi|359381784|emb|CCE80621.1| Piso0_002948 [Millerozyma farinosa CBS 7064]
gi|359382549|emb|CCE79856.1| Piso0_002948 [Millerozyma farinosa CBS 7064]
Length = 123
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 24 LKKSLYAIFSQFGQIMDIVAL-KTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRI 82
+K +LY +FS +G ++DIV K ++RGQA +IF + A AL +Q F++K +++
Sbjct: 48 MKHNLYLLFSTYGDVIDIVFKPKNKRLRGQAHIIFSSASHAARALDELQHVSFFEKQLQM 107
Query: 83 QYSKTDSDV 91
Y+K S V
Sbjct: 108 SYAKKRSKV 116
>gi|50303957|ref|XP_451928.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641060|emb|CAH02321.1| KLLA0B08976p [Kluyveromyces lactis]
Length = 305
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 58/235 (24%), Positives = 102/235 (43%), Gaps = 31/235 (13%)
Query: 37 QIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQG-FPFYDKPMRIQYSKTDSDVISKI 95
QI+++ + +R FV FK+ S L QG + + I+ + TDS
Sbjct: 77 QIIEVSRYGSRPLRRSCFVTFKDSDSCNTFLIEFQGKLKINGRKINIKLANTDSFAALYY 136
Query: 96 KGTFMERPKKVRKQPAPVEDPAEAK--------KSKKKAAKEQARLMQAQQQQMQALSVQ 147
+G + ++R + D ++ K K + + A+ + R ++ +Q L +
Sbjct: 137 QGQQKQLQDELRLRTRKAVDNSQPKTKTKNEVLKRRLRRARSKLRKKDLDEETIQKL-LS 195
Query: 148 QPPVSQPAPPAPMATAGVPEQ-------------PPNQILFLTNLPEETSEMMLSMLFNQ 194
+P + P A + E+ PP+ +L + NLP++ ++ L LF
Sbjct: 196 KPRKTNPEGTNKTAMSQQSEKVSSTKKVFDIVGNPPHHVLLVQNLPKDVTQQELEKLFVS 255
Query: 195 FPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLAL---HGFKITPTHAMKISFAKK 246
GFKEVRLV R ++ FVE+++ + L H FK +KI +AKK
Sbjct: 256 -DGFKEVRLVSVR-NLCFVEYDSTANATKVVETLGHDHPFKNV---TIKIGYAKK 305
>gi|413921011|gb|AFW60943.1| hypothetical protein ZEAMMB73_771004 [Zea mays]
Length = 318
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 56/104 (53%), Gaps = 6/104 (5%)
Query: 149 PPV--SQPAP-PAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLV- 204
PPV + PAP P A A V + PP LF+ NL + E L LF+ PGFK+++++
Sbjct: 193 PPVAMTSPAPVTGPTAYAPVQDNPPCNTLFIGNLGDTVVEEELRSLFSVQPGFKQMKVLR 252
Query: 205 PNRHDIAFVEFENEMQSAAAKLALHGFKI--TPTHAMKISFAKK 246
+R+ + F+EFE+ + + L G I + M+I F+K
Sbjct: 253 QDRNTVCFIEFEDVNAATSVHQTLQGAVIPSSGRGGMRIQFSKN 296
>gi|321252443|ref|XP_003192407.1| hypothetical protein CGB_B8090C [Cryptococcus gattii WM276]
gi|317458875|gb|ADV20620.1| Hypothetical protein CGB_B8090C [Cryptococcus gattii WM276]
Length = 262
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 43/56 (76%)
Query: 23 DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
+LK+ LYA+FS +G+++D+VA K RGQAFV+F+E +AT ALR++ G FY+K
Sbjct: 24 ELKQQLYALFSPYGRVIDVVAKKHDGGRGQAFVVFEEQVAATAALRALTGETFYNK 79
>gi|221061067|ref|XP_002262103.1| cyclophilin [Plasmodium knowlesi strain H]
gi|193811253|emb|CAQ41981.1| cyclophilin, putative [Plasmodium knowlesi strain H]
Length = 127
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 5 LAHICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDI---VALKTLKMRGQAFVIFKEIA 61
++ T +YV I T +KSLY IFS FG + +I + T K RG AFV + E
Sbjct: 1 MSDDNATEVLYVGGIDETIDEKSLYDIFSSFGDVRNIEVPINFVTKKNRGFAFVEYVEKD 60
Query: 62 SATNALRSMQGFPFYDKPMRIQYSKT 87
A +AL +M F K + + YS+
Sbjct: 61 DAKHALYNMNNFELNGKRIYVNYSRN 86
>gi|255717014|ref|XP_002554788.1| KLTH0F13816p [Lachancea thermotolerans]
gi|238936171|emb|CAR24351.1| KLTH0F13816p [Lachancea thermotolerans CBS 6340]
Length = 124
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 46/70 (65%), Gaps = 2/70 (2%)
Query: 24 LKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83
L+++LY +FS +G+++ I + K RGQAF++ + A A+ S+Q F++K + IQ
Sbjct: 51 LRENLYLLFSTYGEVLQINV--SNKNRGQAFIVLRTPDEANVAMISLQKETFFEKELHIQ 108
Query: 84 YSKTDSDVIS 93
+S+ DS +++
Sbjct: 109 FSRQDSKLVA 118
>gi|410084028|ref|XP_003959591.1| hypothetical protein KAFR_0K01000 [Kazachstania africana CBS
2517]
gi|372466183|emb|CCF60456.1| hypothetical protein KAFR_0K01000 [Kazachstania africana CBS
2517]
Length = 93
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 17 THISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFY 76
T ++S L+ +LY +FS +G+++ V+ K RGQAF+ K + A AL S+ F+
Sbjct: 19 TKVNSKKLRVNLYLLFSIYGEVLK-VSTNFRKERGQAFITMKGVDDANLALLSLNDEMFF 77
Query: 77 DKPMRIQYSKTDS 89
DK + +++SK D+
Sbjct: 78 DKKLHVEFSKNDT 90
>gi|330794853|ref|XP_003285491.1| hypothetical protein DICPUDRAFT_149370 [Dictyostelium purpureum]
gi|325084582|gb|EGC38007.1| hypothetical protein DICPUDRAFT_149370 [Dictyostelium purpureum]
Length = 352
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/264 (23%), Positives = 111/264 (42%), Gaps = 62/264 (23%)
Query: 11 TNFVYVTHISSTDLKKSLYAIFSQFGQIMD---IVALKTLKMRGQAFVIFKEIASATNAL 67
+N V++ + + L A+FS G+I++ + + T RGQA V + ++ SA+NA+
Sbjct: 122 SNNVFIKGLPTEYTMDQLKALFSPHGEILESKILTDISTSASRGQALVRYGDVQSASNAV 181
Query: 68 RSMQGFPFY--DKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKK 125
+ + G+ DKP+ +++++ D E KK K
Sbjct: 182 KELNGYIIQDPDKPLIVKFAEND-----------------------------EEKKQSKL 212
Query: 126 AAKEQARLMQAQQQQMQALSVQQP---PVSQPAP----------------PAPMATAGVP 166
+K Q +L Q Q+ M+ P P++Q P P + T +
Sbjct: 213 NSKRQ-KLQQKQRLNMRFSPYPSPIAAPITQMYPYYQTMPTLPTLSPIMQPPILTTKTIT 271
Query: 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLV--PNRH---DIAFVEFENEMQS 221
+ P N L++ NLP + + +L LF+ V++V PN FV + S
Sbjct: 272 QDPTN--LYVYNLPSDADDALLYRLFSPSGAIASVKIVRDPNTQVCKGYGFVRMLSLPDS 329
Query: 222 AAAKLALHGFKITPTHAMKISFAK 245
AA +++G ++ + +SF K
Sbjct: 330 YAAINSINGIQVG-GKTISVSFKK 352
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 3/78 (3%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMD---IVALKTLKMRGQAFVIFKEIASATNALRSM 70
++V+ + ST +SL +FS FG+I +V L T RG FV FK++ASA A+ SM
Sbjct: 19 LFVSFLPSTYTNESLKVLFSPFGEIDSCKVMVDLNTGLSRGFGFVKFKDVASAQYAINSM 78
Query: 71 QGFPFYDKPMRIQYSKTD 88
G +K + ++++ ++
Sbjct: 79 NGMKVDNKTLLVRFANSE 96
>gi|348538447|ref|XP_003456702.1| PREDICTED: RNA-binding protein 40-like [Oreochromis niloticus]
Length = 508
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 8/85 (9%)
Query: 11 TNFVYVTHISSTDLKKSLYAIFSQF--------GQIMDIVALKTLKMRGQAFVIFKEIAS 62
T +YV +I+ +K L I+ ++ + DIV +K +M+GQAFV + S
Sbjct: 407 TCRLYVKNIAKQVEEKELKYIYGRYINLSSEEERNMFDIVLMKEGRMKGQAFVGLPSVQS 466
Query: 63 ATNALRSMQGFPFYDKPMRIQYSKT 87
A AL+ G+ YDKP+ +Q++++
Sbjct: 467 AEKALQETNGYVLYDKPLVVQFARS 491
>gi|294911645|ref|XP_002778029.1| U1 small nuclear ribonucleoprotein A, putative [Perkinsus marinus
ATCC 50983]
gi|239886150|gb|EER09824.1| U1 small nuclear ribonucleoprotein A, putative [Perkinsus marinus
ATCC 50983]
Length = 418
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 170 PNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALH 229
PN+ LF+ NLP + L+ +F +PGF+ R++ R + F++F +E Q+ AK A
Sbjct: 344 PNKTLFVENLPPRCTPEKLTAVFKSYPGFEGTRVIAERQ-VGFIDFSSEFQATMAKNARG 402
Query: 230 GFKITPTHAMKISFAKK 246
+ + +KIS+A+K
Sbjct: 403 DYTME-GQLVKISYARK 418
>gi|156392443|ref|XP_001636058.1| predicted protein [Nematostella vectensis]
gi|156223157|gb|EDO43995.1| predicted protein [Nematostella vectensis]
Length = 470
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/220 (21%), Positives = 85/220 (38%), Gaps = 44/220 (20%)
Query: 27 SLYAIFSQFGQIMDIVALKTL-KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYS 85
S A+F+ FG D+ +K L + A V F + A A+ + G + K M++ S
Sbjct: 291 SCDALFTLFGCYGDVQRVKILFNKKDTALVQFANVHQAQTAIGHLNGVRVFGKEMKVTNS 350
Query: 86 KTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALS 145
K S + K +G K P + KK +K +
Sbjct: 351 KHTSVSLPK-EGEDTNLTKDYMNSPL--------HRFKKPGSKNFQNIF----------- 390
Query: 146 VQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVP 205
PP++ L L+N+PE +E L+ +F + R +P
Sbjct: 391 -----------------------PPSRTLHLSNIPESVTEEELTSMFEDCGDVADFRFLP 427
Query: 206 NRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAK 245
+A + ++ A + +H +KI+ TH +++SFA+
Sbjct: 428 KDRKMAHLSMATTEEAIDALIKMHNYKISETHHLRVSFAR 467
>gi|432927341|ref|XP_004080978.1| PREDICTED: RNA-binding protein 40-like [Oryzias latipes]
Length = 500
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 8/85 (9%)
Query: 11 TNFVYVTHISSTDLKKSLYAIFSQF--------GQIMDIVALKTLKMRGQAFVIFKEIAS 62
T +YV +IS +K L I+ ++ + D+V +K +M+GQAF+ S
Sbjct: 399 TCRLYVKNISKQVEEKDLRYIYGRYIDPSSEEERNMFDVVLMKEGRMKGQAFIGLPNEQS 458
Query: 63 ATNALRSMQGFPFYDKPMRIQYSKT 87
A ALR GF +DKP+ +Q++++
Sbjct: 459 AEKALRETNGFVLHDKPLVVQFARS 483
>gi|357145342|ref|XP_003573610.1| PREDICTED: uncharacterized protein LOC100829014 [Brachypodium
distachyon]
Length = 317
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 57/104 (54%), Gaps = 7/104 (6%)
Query: 150 PVSQPAP-PAPMATAGV---PEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLV- 204
P++ P+P P P A A V + PP LF+ NL E E L LF+ PGFK+++++
Sbjct: 192 PMASPSPLPGPTAYAPVQNTKDNPPCNTLFIGNLGETVVEEELRGLFSVQPGFKQMKVLR 251
Query: 205 PNRHDIAFVEFENEMQSAAAKLALHGFKI--TPTHAMKISFAKK 246
+R+ + F+EF++ ++A L G I + M+I F+K
Sbjct: 252 QDRNTVCFIEFDDVSAASAVHHTLQGAVIPSSGRGGMRIQFSKN 295
>gi|6322199|ref|NP_012274.1| Msl1p [Saccharomyces cerevisiae S288c]
gi|731910|sp|P40567.1|MSL1_YEAST RecName: Full=U2 small nuclear ribonucleoprotein B''; Short=U2
snRNP B''
gi|556855|emb|CAA86079.1| unnamed protein product [Saccharomyces cerevisiae]
gi|1839518|gb|AAB47134.1| YU2B"=12.8kda hypothetical YIB9w gene product [Saccharomyces
cerevisiae=yeast, MGD 353-13D, Peptide, 111 aa]
gi|45270364|gb|AAS56563.1| YIR009W [Saccharomyces cerevisiae]
gi|151943168|gb|EDN61503.1| U2 snRNP component [Saccharomyces cerevisiae YJM789]
gi|190406214|gb|EDV09481.1| U2 snRNP component [Saccharomyces cerevisiae RM11-1a]
gi|256274156|gb|EEU09066.1| Msl1p [Saccharomyces cerevisiae JAY291]
gi|285812656|tpg|DAA08555.1| TPA: Msl1p [Saccharomyces cerevisiae S288c]
gi|323333075|gb|EGA74476.1| Msl1p [Saccharomyces cerevisiae AWRI796]
gi|323337230|gb|EGA78484.1| Msl1p [Saccharomyces cerevisiae Vin13]
gi|346228220|gb|AEO21097.1| MSL1 [synthetic construct]
gi|349578960|dbj|GAA24124.1| K7_Msl1p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365765032|gb|EHN06547.1| Msl1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392298732|gb|EIW09828.1| Msl1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 111
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 53/85 (62%), Gaps = 5/85 (5%)
Query: 12 NFVYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNAL 67
N +YV+ I+ L+ +L+ +F+ FG+++ V++ K RGQAF+ + I A+ A
Sbjct: 28 NTLYVSQLNEKINMQRLRVNLFLLFATFGEVLK-VSMNFKKQRGQAFITMRTIDQASLAQ 86
Query: 68 RSMQGFPFYDKPMRIQYSKTDSDVI 92
S+ G F+ KP+++++SK+++ +
Sbjct: 87 ISLNGERFFGKPLKVEFSKSETKTL 111
>gi|259147268|emb|CAY80521.1| Msl1p [Saccharomyces cerevisiae EC1118]
Length = 111
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 53/85 (62%), Gaps = 5/85 (5%)
Query: 12 NFVYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNAL 67
N +YV+ I+ L+ +L+ +F+ FG+++ V++ K RGQAF+ + I A+ A
Sbjct: 28 NTLYVSQLNEKINMQRLRVNLFLLFATFGEVLK-VSMNFKKQRGQAFITMRTIDQASLAQ 86
Query: 68 RSMQGFPFYDKPMRIQYSKTDSDVI 92
S+ G F+ KP+++++SK+++ +
Sbjct: 87 ISLNGERFFGKPLKVEFSKSETKTL 111
>gi|323348091|gb|EGA82346.1| Msl1p [Saccharomyces cerevisiae Lalvin QA23]
Length = 111
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 53/85 (62%), Gaps = 5/85 (5%)
Query: 12 NFVYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNAL 67
N +YV+ I+ L+ +L+ +F+ FG+++ V++ K RGQAF+ + I A+ A
Sbjct: 28 NTLYVSQLNEKINMQRLRVNLFLLFATFGEVLK-VSMNFKKQRGQAFITMRTIDQASLAQ 86
Query: 68 RSMQGFPFYDKPMRIQYSKTDSDVI 92
S+ G F+ KP+++++SK+++ +
Sbjct: 87 ISLNGERFFGKPLKVEFSKSETKTL 111
>gi|68076357|ref|XP_680098.1| cyclophilin [Plasmodium berghei strain ANKA]
gi|56500983|emb|CAH98215.1| cyclophilin, putative [Plasmodium berghei]
Length = 134
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 11 TNFVYVTHISSTDLKKSLYAIFSQFGQIMDI---VALKTLKMRGQAFVIFKEIASATNAL 67
T +YV I T KK LY IFS FG I +I + L T K RG AF+ + E A +AL
Sbjct: 6 TETLYVGGIHETIDKKCLYDIFSSFGDIRNIEIPMNLVTNKHRGFAFIEYVEKDDAKHAL 65
Query: 68 RSMQGFPFYDKPMRIQYSKT 87
+M F K + + YS+T
Sbjct: 66 YNMSNFELNGKIITVNYSRT 85
>gi|281205884|gb|EFA80073.1| hypothetical protein PPL_06895 [Polysphondylium pallidum PN500]
Length = 639
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 56/125 (44%), Gaps = 17/125 (13%)
Query: 128 KEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQ------PP---------NQ 172
K++ R + ++ + + S APP P P+ PP N
Sbjct: 495 KDRGRYRDSHFERDSYPAKRDFHGSMAAPPLPHHHGAYPDPTMPYFIPPRQNFDMKDANT 554
Query: 173 ILFLTNLPEETSEMMLSMLFNQFPGFKEVRLV--PNRHDIAFVEFENEMQSAAAKLALHG 230
LF +NLP++ +E LS+LF GF VRLV ++ I F +F +A A L+G
Sbjct: 555 TLFFSNLPKDVTERELSILFRFMRGFLNVRLVQRDGKYPICFCDFRGVPSAAIAMEMLNG 614
Query: 231 FKITP 235
FK+ P
Sbjct: 615 FKMDP 619
>gi|365760107|gb|EHN01850.1| Msl1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|401837850|gb|EJT41708.1| MSL1-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 111
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 52/85 (61%), Gaps = 5/85 (5%)
Query: 12 NFVYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNAL 67
N +YV+ I+ L+ +L+ +F+ FG+++ V++ K RGQAFV + I A+ A
Sbjct: 28 NTLYVSQLNEKINVQRLRVNLFLLFATFGEVLK-VSMNFKKQRGQAFVTMRTIDQASLAQ 86
Query: 68 RSMQGFPFYDKPMRIQYSKTDSDVI 92
S+ G F+DK +++++SK ++ +
Sbjct: 87 ISLNGELFFDKTLKVEFSKNETKTL 111
>gi|339251724|ref|XP_003372884.1| protein couch potato [Trichinella spiralis]
gi|316968731|gb|EFV52966.1| protein couch potato [Trichinella spiralis]
Length = 355
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 64/264 (24%), Positives = 113/264 (42%), Gaps = 46/264 (17%)
Query: 26 KSLYAIFSQFGQIMDIVALKTLKMRGQA-----FVIFKEIASATNALRSMQGFPF---YD 77
+ LY +F + + + LK + G+A FV F A+A A +S+QG F
Sbjct: 80 RELYLLFRAY-KGYESSLLKVTQKNGKATTPIGFVTFNSRAAAEEAKQSLQGVKFDPELP 138
Query: 78 KPMRIQYSKTDSDV----------------ISKIKGTFMERPKKVRKQPAPVEDPAEAKK 121
+P+R++++++++ V + I G + P + A + PA A
Sbjct: 139 QPIRLEFARSNTKVCKPKVQSPPASAYAPFLHPITGHELMAPI-LHGPGADLFHPALASY 197
Query: 122 SKKKAAKEQARLMQAQQQQ-----------------MQALSVQQPPVSQPAPPAPMATAG 164
+ + A L+Q Q M A + P + PA P + +
Sbjct: 198 AAEFAQTFPHPLLQNTLQHPALPPIPHQLASHYPAAMLAAASGMPGMLPPASLPPTSVSS 257
Query: 165 VPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLV-PNRHDIAFVEFENEMQSAA 223
+ P+ LF+ NL +T E L +F+ PGF +R++ N +AFVE+ + + +
Sbjct: 258 MSAGQPSTTLFVANLGAKTQEQELLEVFSNIPGFIRLRILHKNGFPVAFVEYSDVINANH 317
Query: 224 AKLALHGFKITPTH--AMKISFAK 245
A AL GF + + M+I FA+
Sbjct: 318 ALNALQGFVLMSSDRGGMRIEFAR 341
>gi|449447968|ref|XP_004141738.1| PREDICTED: U1 small nuclear ribonucleoprotein A-like [Cucumis
sativus]
gi|449515829|ref|XP_004164950.1| PREDICTED: U1 small nuclear ribonucleoprotein A-like [Cucumis
sativus]
Length = 335
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
Query: 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLV-PNRHDIAFVEFENEMQSAAAK 225
+ PP LF+ NL E +E L LF+ PGFK+++++ RH + F+EFE+ +
Sbjct: 226 DNPPCNTLFIGNLGENVNEEELRGLFSVQPGFKQMKILRQERHTVCFIEFEDVNNATNVH 285
Query: 226 LALHGFKI--TPTHAMKISFAKK 246
+L G I + + M+I F+K
Sbjct: 286 HSLQGAVIPSSGSVGMRIQFSKN 308
>gi|281203789|gb|EFA77985.1| RNA-binding region RNP-1 domain-containing protein [Polysphondylium
pallidum PN500]
Length = 447
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 85/206 (41%), Gaps = 50/206 (24%)
Query: 11 TNFVYVTHISSTDLKKSLYAIFSQFGQIMD---IVALKTLKMRGQAFVIFKEIASATNAL 67
TN +Y+ + + ++ L FS +G I++ ++ + T RGQA V F EI+SAT ++
Sbjct: 235 TNNLYIKGLPLSFTQEQLNEFFSAYGTILESKLLLDITTNTSRGQALVRFAEISSATKSI 294
Query: 68 RSMQG--FPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKK 125
+++ FP DK + ++Y+ + + + K T + +R P P
Sbjct: 295 KALTNYKFPGADKVVIVRYADNEEEKVHKRMKTQHKTRSNLRFSPYP------------- 341
Query: 126 AAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMA-------TAGVPEQPPNQILFLTN 178
P + P PAP A G+ P N L++ N
Sbjct: 342 -----------------------SPTTTPLYPAPTAFYQMSPVIGGLGMDPTN--LYIYN 376
Query: 179 LPEETSEMMLSMLFNQFPGFKEVRLV 204
LP + + +L LF+ V++V
Sbjct: 377 LPADADDALLYRLFSPSGAIASVKVV 402
>gi|168024982|ref|XP_001765014.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683823|gb|EDQ70230.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 158
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 66/134 (49%), Gaps = 17/134 (12%)
Query: 129 EQARLMQAQQQQMQALSVQQPP---VSQPAPPAPMATAGVPEQPPN--QILFLTNLPEET 183
++++LM A+ + +P ++ AP + G+ PP+ LF+ LP++
Sbjct: 20 DESQLMGARMGPLDVGMGGRPGALGLNGGAPEPDVLRGGLEVLPPDASSTLFVDGLPQDC 79
Query: 184 SEMMLSMLFNQFPGFKEVRLV---PNRHD-----IAFVEFENEMQSAAAKLALHGFKITP 235
S + +F F GFKEVRLV R D + FVEF + +A A AL G+K
Sbjct: 80 SRREAAHIFRPFIGFKEVRLVHKDAKRADGGKVVLCFVEFADARCAATALEALQGYKFDE 139
Query: 236 T----HAMKISFAK 245
T + ++++FA+
Sbjct: 140 TDHESYVLRLTFAR 153
>gi|47218419|emb|CAG12690.1| unnamed protein product [Tetraodon nigroviridis]
Length = 609
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 8/91 (8%)
Query: 11 TNFVYVTHISSTDLKKSLYAIFSQF--------GQIMDIVALKTLKMRGQAFVIFKEIAS 62
T +YV +I+ +K L I+ ++ + DI+ +K +M+GQAFV S
Sbjct: 402 TCRLYVKNIAKQAEEKDLKYIYGRYIDPSSEPERNMFDIMLMKEGRMKGQAFVGLPSEQS 461
Query: 63 ATNALRSMQGFPFYDKPMRIQYSKTDSDVIS 93
A ALR G+ YDKP+ ++ +K+ +V +
Sbjct: 462 AEKALRETNGYVLYDKPLIVRLTKSKEEVWT 492
>gi|294463303|gb|ADE77187.1| unknown [Picea sitchensis]
Length = 245
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Query: 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLV-PNRHDIAFVEFENEMQSAAAK 225
+ PP LF+ NL E T+E L LF+ PGF++++++ R + F+E+E+ +AA
Sbjct: 127 DNPPCNTLFIGNLGENTNETELRGLFSGQPGFRQMKVLRQERSTVCFIEYEDLHSAAAVH 186
Query: 226 LALHGFKITPTH--AMKISFAKK 246
L G ++ + M+I ++K
Sbjct: 187 NNLQGAVLSSSERGGMRIQYSKN 209
>gi|328875060|gb|EGG23425.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
fasciculatum]
Length = 302
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 104/250 (41%), Gaps = 58/250 (23%)
Query: 53 AFVIFKEIASATNALRSMQGFPFY--DKPMRIQYSK----------------------TD 88
AFV FK+ AT+A+R G+ + D+P+ I + + TD
Sbjct: 45 AFVEFKDRGFATSAMRRYSGYRHHPTDRPLSIDFDRDPRSRDDYPPQVLDTQPPPSHYTD 104
Query: 89 ----SDVISKIKGTFME---RPKKVRKQPAPVE------DPAEAKKSKKKAAKEQARLMQ 135
D + ++ E R +K RK P DP+ + KK++ + R +
Sbjct: 105 EGRGGDRYESNRDSYTEDEDRSEKHRKYSDPSSSAITKTDPSSVDE-KKRSRSDYDRFEK 163
Query: 136 AQQQQMQALSVQQPPVSQ----PAPPAP------MATAGVPEQP-----PNQILFLTNLP 180
+ + + + S+ +PP P TA VP P P LF++NLP
Sbjct: 164 DRSKYRDSYFERDEYPSRGREFDSPPIPGYEHMMFPTARVPPPPGQFKDPQSTLFVSNLP 223
Query: 181 EETSEMMLSMLFNQFPGFKEVRLV--PNRHDIAFVEFENEMQSAAAKLALHGFKITP--- 235
++ +E LS+LF GF RLV ++ I F +F + + A L G+++ P
Sbjct: 224 KDVTERELSILFRFMRGFISCRLVIREGKYPICFCDFRDIPSAIMAMEILQGYRMDPNDV 283
Query: 236 THAMKISFAK 245
+ ++ I F +
Sbjct: 284 SSSISIEFDR 293
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 169 PPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLAL 228
PP+++LF+ ++P + +LF+ PGF +R PN AFVEF++ + +A
Sbjct: 6 PPSKVLFIRDIPAGMTNDEFDLLFSNLPGFVSIRRKPN---FAFVEFKDRGFATSAMRRY 62
Query: 229 HGFKITPT-HAMKISFAK 245
G++ PT + I F +
Sbjct: 63 SGYRHHPTDRPLSIDFDR 80
>gi|312086378|ref|XP_003145052.1| hypothetical protein LOAG_09478 [Loa loa]
Length = 396
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 161 ATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRL-VPNRHDIAFVEFENEM 219
ATA V P LF+ NL + +E L +F +PGF +RL N +AFVEF +
Sbjct: 301 ATAAV--SPACSTLFVANLGDGITEDELKAVFCAYPGFTRLRLHTRNDTTVAFVEFRDVR 358
Query: 220 QSAAAKLALHGFKITPTH--AMKISFAKK 246
Q+ AL G +I+ +H ++I +A+
Sbjct: 359 QATLVMNALQGCRISSSHRGGIRIEYARN 387
>gi|393910177|gb|EFO19018.2| hypothetical protein LOAG_09478 [Loa loa]
Length = 395
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 161 ATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRL-VPNRHDIAFVEFENEM 219
ATA V P LF+ NL + +E L +F +PGF +RL N +AFVEF +
Sbjct: 301 ATAAV--SPACSTLFVANLGDGITEDELKAVFCAYPGFTRLRLHTRNDTTVAFVEFRDVR 358
Query: 220 QSAAAKLALHGFKITPTH--AMKISFAKK 246
Q+ AL G +I+ +H ++I +A+
Sbjct: 359 QATLVMNALQGCRISSSHRGGIRIEYARN 387
>gi|300175584|emb|CBK20895.2| unnamed protein product [Blastocystis hominis]
Length = 420
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 6/82 (7%)
Query: 9 CVTNFVYVTHISSTDLKKSLYAIFSQF----GQIMDIVALKTLKMRGQAFVIFKEIASAT 64
C N +YV ++S K+ L +F +F G+ + L T +M+GQAF+ F ++ +A
Sbjct: 341 CPNNTLYVRNLSPNISKEELVDLFGRFERSPGEF--VYTLLTGRMKGQAFITFPDLETAE 398
Query: 65 NALRSMQGFPFYDKPMRIQYSK 86
R + GF KP+ +QY +
Sbjct: 399 KVKRKLHGFVLNGKPLLLQYKR 420
>gi|6319595|ref|NP_009677.1| Mud1p [Saccharomyces cerevisiae S288c]
gi|417742|sp|P32605.1|RU1A_YEAST RecName: Full=U1 small nuclear ribonucleoprotein A; Short=U1 snRNP
A; Short=U1-A; Short=U1A; AltName: Full=Mutant U1 die
protein 1
gi|297483|emb|CAA50378.1| U1 snRNP A protein [Saccharomyces cerevisiae]
gi|536398|emb|CAA85076.1| MUD1 [Saccharomyces cerevisiae]
gi|285810452|tpg|DAA07237.1| TPA: Mud1p [Saccharomyces cerevisiae S288c]
gi|392300958|gb|EIW12047.1| Mud1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 298
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 63/127 (49%), Gaps = 4/127 (3%)
Query: 121 KSKKKAAKEQARLMQA-QQQQMQALSVQQPPVSQPAPPAPMA-TAGVPEQPPNQILFLTN 178
+S+K E R+++ + ++++ + QQ + Q P A + E PPN++L + N
Sbjct: 174 RSRKVEEAEIDRIVKEFETRRLENMKSQQENLKQSQKPLKRAKVSNTMENPPNKVLLIQN 233
Query: 179 LPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHA 238
LP T+E +LS + E+RLV R ++AFVE+E + K L +
Sbjct: 234 LPSGTTEQLLSQILGN-EALVEIRLVSVR-NLAFVEYETVADATKIKNQLGSTYKLQNND 291
Query: 239 MKISFAK 245
+ I FAK
Sbjct: 292 VTIGFAK 298
>gi|410908825|ref|XP_003967891.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 40-like
[Takifugu rubripes]
Length = 505
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 8/85 (9%)
Query: 11 TNFVYVTHISSTDLKKSLYAIFSQF--------GQIMDIVALKTLKMRGQAFVIFKEIAS 62
T +YV +I+ +K L I+ ++ + DI+ +K +M+GQAFV S
Sbjct: 405 TCRLYVKNIAKQVEEKDLKYIYGRYINPSSEEERNMFDIMLMKEGRMKGQAFVGLPSEQS 464
Query: 63 ATNALRSMQGFPFYDKPMRIQYSKT 87
A ALR G+ YDKP+ +Q++++
Sbjct: 465 AEKALRETNGYILYDKPLIVQFARS 489
>gi|367000019|ref|XP_003684745.1| hypothetical protein TPHA_0C01550 [Tetrapisispora phaffii CBS 4417]
gi|357523042|emb|CCE62311.1| hypothetical protein TPHA_0C01550 [Tetrapisispora phaffii CBS 4417]
Length = 116
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 49/76 (64%), Gaps = 5/76 (6%)
Query: 14 VYVTHIS----STDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ ++S S +L+ +L+ +FS +G+++ I ++ T + RGQAF+ K + A A S
Sbjct: 35 LYINNLSDGIGSKNLRTNLFLLFSVYGEVIKI-SVNTKRQRGQAFIRMKNVDQANLAKVS 93
Query: 70 MQGFPFYDKPMRIQYS 85
+ G F+DK ++I++S
Sbjct: 94 LNGEIFFDKQLQIEFS 109
>gi|327270620|ref|XP_003220087.1| PREDICTED: RNA-binding protein 40-like [Anolis carolinensis]
Length = 515
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 49/82 (59%), Gaps = 8/82 (9%)
Query: 14 VYVTHISSTDLKKSLYAIFSQF-------GQIM-DIVALKTLKMRGQAFVIFKEIASATN 65
+YV ++S +K L IF ++ +IM DI +K +M+GQAF+ + +AT
Sbjct: 415 IYVKNLSKQVQEKDLKFIFGRYVDFSSEVERIMFDIRLMKEGRMKGQAFIGLPDEKAATK 474
Query: 66 ALRSMQGFPFYDKPMRIQYSKT 87
AL+ + G+ +DKPM +Q++++
Sbjct: 475 ALKEVNGYLLFDKPMVVQFARS 496
>gi|410080362|ref|XP_003957761.1| hypothetical protein KAFR_0F00290 [Kazachstania africana CBS 2517]
gi|372464348|emb|CCF58626.1| hypothetical protein KAFR_0F00290 [Kazachstania africana CBS 2517]
Length = 680
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 87/199 (43%), Gaps = 41/199 (20%)
Query: 66 ALRSMQGFPF---YDKP--MRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAK 120
+ RS+ PF Y+ P M I S ++ V++ I +E P +K+P + + A
Sbjct: 468 SYRSLISTPFSQQYNTPAAMGINSSLGNNGVLNNISNVNVENPNSEKKRP----NVSNAA 523
Query: 121 KSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLP 180
K ++A QA L +L + PP + PA + PP L++ NLP
Sbjct: 524 NVKNESAISQADL---------SLLAKIPPPANPAD----------QNPPCNTLYVGNLP 564
Query: 181 EETSEMMLSMLFNQFPGFKEV----RLVPNRHD----IAFVEFENEMQSAAAKLALHGFK 232
+ +E L LF+ GF+ + + +P + FVEF++ S A L+G +
Sbjct: 565 PDATEQELRQLFSSQEGFRRLSFKNKSIPGHGHGHGPMCFVEFDDVSFSTRALAKLYGSQ 624
Query: 233 -----ITPTHAMKISFAKK 246
I +++SF+K
Sbjct: 625 LPRSTINSKGGIRLSFSKN 643
>gi|384490609|gb|EIE81831.1| hypothetical protein RO3G_06536 [Rhizopus delemar RA 99-880]
Length = 807
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Query: 168 QPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLA 227
Q P + L++ N+P T+++ML F+ F + VR++P++ + AF+ F N ++ AK A
Sbjct: 347 QEPTRALWVGNIPNNTTQVMLVDTFSTFGTIESVRVLPHK-NCAFINFFNVEEAVMAKRA 405
Query: 228 LHGFKIT--PTHAMKISFAK 245
LH +I T A+K FAK
Sbjct: 406 LHNREIMGQGTGAVKTGFAK 425
>gi|476073|emb|CAA55621.1| small nuclear ribonucleoprotein [Saccharomyces cerevisiae]
Length = 301
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 63/127 (49%), Gaps = 4/127 (3%)
Query: 121 KSKKKAAKEQARLMQA-QQQQMQALSVQQPPVSQPAPPAPMA-TAGVPEQPPNQILFLTN 178
+S+K E R+++ + ++++ + QQ + Q P A + E PPN++L + N
Sbjct: 177 RSRKVEEAEIDRIVKEFETRRLENMKSQQENLKQSQKPLKRAKVSNTMENPPNKVLLIQN 236
Query: 179 LPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHA 238
LP T+E +LS + E+RLV R ++AFVE+E + K L +
Sbjct: 237 LPSGTTEQLLSQILGN-EALVEIRLVSVR-NLAFVEYETVADATKIKNQLGSTYKLQNND 294
Query: 239 MKISFAK 245
+ I FAK
Sbjct: 295 VTIGFAK 301
>gi|349576496|dbj|GAA21667.1| K7_Mud1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 298
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 63/127 (49%), Gaps = 4/127 (3%)
Query: 121 KSKKKAAKEQARLMQA-QQQQMQALSVQQPPVSQPAPPAPMA-TAGVPEQPPNQILFLTN 178
+S+K E R+++ + ++++ + QQ + Q P A + E PPN++L + N
Sbjct: 174 RSRKVEEAEIDRIVKEFETRRLENMKSQQENLKQSQKPLKRAKVSNTMENPPNKVLLIQN 233
Query: 179 LPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHA 238
LP T+E +LS + E+RLV R ++AFVE+E + K L +
Sbjct: 234 LPSGTTEQLLSQILGN-EALVEIRLVSVR-NLAFVEYETVADATKIKNQLGSTYKLQNND 291
Query: 239 MKISFAK 245
+ I FAK
Sbjct: 292 VTIGFAK 298
>gi|156322331|ref|XP_001618332.1| hypothetical protein NEMVEDRAFT_v1g154871 [Nematostella vectensis]
gi|156198513|gb|EDO26232.1| predicted protein [Nematostella vectensis]
Length = 140
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 43/77 (55%)
Query: 169 PPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLAL 228
PP++ L L+N+PE +E L+ +F + R +P +A + ++ A + +
Sbjct: 61 PPSRTLHLSNIPESVTEEELTSMFEDCGDVADFRFLPKDRKMAHLSMATTEEAIDALIKM 120
Query: 229 HGFKITPTHAMKISFAK 245
H +KI+ TH +++SFA+
Sbjct: 121 HNYKISETHHLRVSFAR 137
>gi|449444421|ref|XP_004139973.1| PREDICTED: RNA-binding protein 40-like [Cucumis sativus]
Length = 359
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
Query: 11 TNFVYVTHISSTDLKKSLYAIFSQFGQIMD-------IVALKTLKMRGQAFVIFKEIASA 63
T+ +Y+ +++ L LY IF + +D + ++ +MRGQAFV F I A
Sbjct: 269 TSVLYIKNLAKDVLNDDLYYIFGSLFEGIDEAKSALTVKLMQEGRMRGQAFVTFPSIELA 328
Query: 64 TNALRSMQGFPFYDKPMRIQYSKTDSDV 91
AL + G+ F KPM IQ+ + V
Sbjct: 329 QRALNLVNGYVFKGKPMIIQFGRNPGGV 356
>gi|323310078|gb|EGA63272.1| Mud1p [Saccharomyces cerevisiae FostersO]
Length = 301
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 62/127 (48%), Gaps = 4/127 (3%)
Query: 121 KSKKKAAKEQARLMQA-QQQQMQALSVQQPPVSQPAPPAPMA-TAGVPEQPPNQILFLTN 178
+S+K E R+++ + ++++ + QQ + Q P + E PPN++L + N
Sbjct: 177 RSRKVEEAEIDRIVKEFETRRLENMKSQQENLKQSQKPLKRTKVSNTMENPPNKVLLIQN 236
Query: 179 LPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHA 238
LP T+E +LS + E+RLV R ++AFVE+E + K L +
Sbjct: 237 LPSGTTEQLLSQILGN-EALVEIRLVSVR-NLAFVEYETXADATKIKNQLGSTYKLQNND 294
Query: 239 MKISFAK 245
+ I FAK
Sbjct: 295 VTIGFAK 301
>gi|365981947|ref|XP_003667807.1| hypothetical protein NDAI_0A04070 [Naumovozyma dairenensis CBS 421]
gi|343766573|emb|CCD22564.1| hypothetical protein NDAI_0A04070 [Naumovozyma dairenensis CBS 421]
Length = 113
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 48/80 (60%), Gaps = 5/80 (6%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+YV++ I+ L+ +LY +FS +G+++ VA+ K RGQA++ K + A A S
Sbjct: 32 LYVSNLNEKINPKRLRINLYLLFSIYGEVIK-VAISAKKQRGQAYITMKNVDEANLAKIS 90
Query: 70 MQGFPFYDKPMRIQYSKTDS 89
+ F++ P+ I++SK DS
Sbjct: 91 LNDELFFENPLHIEFSKEDS 110
>gi|440801545|gb|ELR22563.1| RNA recognition motif domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 520
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 45/79 (56%), Gaps = 4/79 (5%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGF 73
++V ++S +++L +F ++G+I + L + RG AF+ + +I A A R +QG+
Sbjct: 124 LFVRNVSYNTSERTLMDLFKKYGEIKRVFNL--IDKRGMAFITYYDIRDAQEAKRDLQGY 181
Query: 74 PFYDKPMRIQYS--KTDSD 90
F +P+ I YS + D D
Sbjct: 182 DFEGRPLDIHYSIPRDDED 200
>gi|323305953|gb|EGA59688.1| Mud1p [Saccharomyces cerevisiae FostersB]
Length = 192
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 3/108 (2%)
Query: 139 QQMQALSVQQPPVSQPAPPAPMA-TAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPG 197
++++ + QQ + Q P + E PPN++L + NLP T+E +LS +
Sbjct: 87 RRLENMKSQQENLKQSQKPLKRTKVSNTMENPPNKVLLIQNLPSGTTEQLLSQILGN-EA 145
Query: 198 FKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAK 245
E+RLV R+ +AFVE+E + K L + + I FAK
Sbjct: 146 LVEIRLVSVRN-LAFVEYETIADATKIKNQLGSTYKLQNNDVTIGFAK 192
>gi|313234966|emb|CBY24911.1| unnamed protein product [Oikopleura dioica]
Length = 788
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%)
Query: 168 QPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLA 227
PP++ L L+N+P E E + LF F K R N +A +E E Q+ A +
Sbjct: 702 HPPSETLHLSNIPPEIEEDRIRELFVPFGNIKNFRFFHNDRKMALIEMGTEPQAVEALIE 761
Query: 228 LHGFKITPTHAMKISFAK 245
LH K++ ++ +++SF++
Sbjct: 762 LHNVKLSDSNHLRVSFSR 779
>gi|356521751|ref|XP_003529515.1| PREDICTED: uncharacterized protein LOC100797865 [Glycine max]
Length = 320
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 9/106 (8%)
Query: 150 PVSQPAP-PAPMATAGVP-----EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRL 203
PV P P P P + VP + PP LF+ NL E +E + LF+ PGFK++++
Sbjct: 189 PVPMPTPAPIPAPSTYVPVQNTKDNPPCNTLFIGNLGENINEEEVRGLFSVQPGFKQMKI 248
Query: 204 V-PNRHDIAFVEFENEMQSAAAKLALHGFKI--TPTHAMKISFAKK 246
+ RH + F+EFE+ + L G I + + M+I ++K
Sbjct: 249 LRQERHTVCFIEFEDVNSATNVHHNLQGAVIPSSGSIGMRIQYSKN 294
>gi|449475881|ref|XP_004154577.1| PREDICTED: uncharacterized protein LOC101229209 [Cucumis sativus]
Length = 898
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 9/82 (10%)
Query: 7 HICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNA 66
H+ V N +V +++ L FSQFG+ +D +A + R AFV FK A A
Sbjct: 38 HLWVGNLAHVV------VERDLSRYFSQFGE-LDSIAFQP--SRSYAFVNFKRDEDAMAA 88
Query: 67 LRSMQGFPFYDKPMRIQYSKTD 88
+R +QGF P++I+++K D
Sbjct: 89 MRELQGFSLGGNPIKIEFTKAD 110
Score = 40.4 bits (93), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 168 QPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLA 227
PP++ L++ NL E LS F+QF + P+R AFV F+ + + AA
Sbjct: 33 NPPSRHLWVGNLAHVVVERDLSRYFSQFGELDSIAFQPSR-SYAFVNFKRDEDAMAAMRE 91
Query: 228 LHGFKITPTHAMKISFAK 245
L GF + + +KI F K
Sbjct: 92 LQGFSLG-GNPIKIEFTK 108
>gi|449444608|ref|XP_004140066.1| PREDICTED: uncharacterized protein LOC101216073 [Cucumis sativus]
Length = 898
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 9/82 (10%)
Query: 7 HICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNA 66
H+ V N +V +++ L FSQFG+ +D +A + R AFV FK A A
Sbjct: 38 HLWVGNLAHVV------VERDLSRYFSQFGE-LDSIAFQP--SRSYAFVNFKRDEDAMAA 88
Query: 67 LRSMQGFPFYDKPMRIQYSKTD 88
+R +QGF P++I+++K D
Sbjct: 89 MRELQGFSLGGNPIKIEFTKAD 110
Score = 40.0 bits (92), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 168 QPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLA 227
PP++ L++ NL E LS F+QF + P+R AFV F+ + + AA
Sbjct: 33 NPPSRHLWVGNLAHVVVERDLSRYFSQFGELDSIAFQPSR-SYAFVNFKRDEDAMAAMRE 91
Query: 228 LHGFKITPTHAMKISFAK 245
L GF + + +KI F K
Sbjct: 92 LQGFSLG-GNPIKIEFTK 108
>gi|224088786|ref|XP_002308540.1| predicted protein [Populus trichocarpa]
gi|222854516|gb|EEE92063.1| predicted protein [Populus trichocarpa]
Length = 476
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 67/153 (43%), Gaps = 30/153 (19%)
Query: 107 RKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVP 166
+ P+P+EDP+ + + + A + + +L S PP P +
Sbjct: 123 KGYPSPLEDPSLLSQRGDASVRVTAAIPDMINDRPGSLR------SADGPPVPKGES--- 173
Query: 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLV-------PNRHDI-AFVEFENE 218
ILF+ LP + + + LF F G+KE+R+V +R + FVEF +
Sbjct: 174 -----NILFVDGLPTDCTRREVGHLFRPFIGYKEIRVVHKEARKSGDRATVLCFVEFTDA 228
Query: 219 MQSAAAKLALHGFKI------TPTHAMKISFAK 245
+A A AL G+K +PT +KI FA+
Sbjct: 229 NCAATAMEALQGYKFDDKKPDSPT--LKIQFAR 259
>gi|255568059|ref|XP_002525006.1| RNA-binding protein with multiple splicing, putative [Ricinus
communis]
gi|223535714|gb|EEF37378.1| RNA-binding protein with multiple splicing, putative [Ricinus
communis]
Length = 337
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Query: 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLV-PNRHDIAFVEFENEMQSAAAK 225
+ PP LF+ NL E +E L LF+ PGFK+++++ RH + F+EFE+ ++
Sbjct: 228 DNPPCNTLFIGNLGENINEDELRGLFSVQPGFKQMKVLRQERHTVCFIEFEDVNSASNVH 287
Query: 226 LALHGFKI--TPTHAMKISFAKK 246
+L G I + + M+I ++K
Sbjct: 288 RSLQGAVIPSSGSVGMRIQYSKN 310
>gi|166796977|gb|AAI59025.1| rnpc3 protein [Xenopus (Silurana) tropicalis]
Length = 520
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 8/82 (9%)
Query: 14 VYVTHISSTDLKKSLYAIFSQF--------GQIMDIVALKTLKMRGQAFVIFKEIASATN 65
+YV ++S +K L IF +F + DI +K +M+GQAF+ F A
Sbjct: 425 LYVKNLSKQAEEKDLKFIFGRFIDFSSETEKNMFDIRLMKEGRMKGQAFIGFPTEDVAAQ 484
Query: 66 ALRSMQGFPFYDKPMRIQYSKT 87
AL+ + G+ +DKPM IQ++++
Sbjct: 485 ALKHVHGYVLHDKPMVIQFARS 506
>gi|391339586|ref|XP_003744129.1| PREDICTED: RNA-binding protein 40-like [Metaseiulus occidentalis]
Length = 361
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 9/88 (10%)
Query: 6 AHICVTNFVYVTHISSTDLKKSLYAIFSQF-------GQIMDIVALKTLKMRGQAFVIFK 58
+CV ++ H S+T+ + L+++F QF I DI +K+ +MRGQAFV +
Sbjct: 270 GDVCVRLYLKNLHKSTTE--EELFSVFGQFVPDNDAERAIFDIKLMKSGRMRGQAFVTYG 327
Query: 59 EIASATNALRSMQGFPFYDKPMRIQYSK 86
+ +A AL KPM +Q++K
Sbjct: 328 SVPAAERALELTNRVILNGKPMSVQFAK 355
>gi|410078922|ref|XP_003957042.1| hypothetical protein KAFR_0D02600 [Kazachstania africana CBS 2517]
gi|372463627|emb|CCF57907.1| hypothetical protein KAFR_0D02600 [Kazachstania africana CBS 2517]
Length = 288
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 105/244 (43%), Gaps = 37/244 (15%)
Query: 30 AIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTDS 89
A+ + I+ I K+ K+ Q F+ F A + Q + I ++K DS
Sbjct: 54 ALLDETNGIISIS--KSKKLPNQCFITFTSNDLANQFMTRFQNSKINGNVISITFAKHDS 111
Query: 90 DV-IS----KIKGTFMERPKKVRKQPAPVEDPAEAK-----------KSKKKAAKEQARL 133
+ IS ++ G +++ ++ +K ED A A K +KK E+ +
Sbjct: 112 LIGISAEDKRLLGKILKK-RQSKKLRLADEDVARAYYLKRIKRRTSYKLRKKGLSEE-EI 169
Query: 134 MQAQQQQMQALSVQQPPVSQPAPPAPMAT-----------AGVPEQPPNQILFLTNLPEE 182
+ + +Q+L QQ +S+ P+ + E PPN++L + NLP
Sbjct: 170 AKIVTETLQSLQDQQ--LSKAMSSGPLKKTKKKDETKVKPVNISENPPNKVLLVQNLPAN 227
Query: 183 TSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLAL-HGFKITPTHAMKI 241
+ + LF Q G EVRLV RH +AFVE++ S+A K L H + + I
Sbjct: 228 VKQEDVINLF-QNAGLVEVRLVSPRH-LAFVEYKTVEDSSAIKDKLGHSYNWL-NKTLII 284
Query: 242 SFAK 245
FAK
Sbjct: 285 GFAK 288
>gi|213624585|gb|AAI71301.1| RNA-binding region (RNP1, RRM) containing 3 [Xenopus (Silurana)
tropicalis]
gi|213627408|gb|AAI71275.1| RNA-binding region (RNP1, RRM) containing 3 [Xenopus (Silurana)
tropicalis]
Length = 527
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 8/82 (9%)
Query: 14 VYVTHISSTDLKKSLYAIFSQF--------GQIMDIVALKTLKMRGQAFVIFKEIASATN 65
+YV ++S +K L IF +F + DI +K +M+GQAF+ F A
Sbjct: 432 LYVKNLSKQAEEKDLKFIFGRFIDFSSETEKNMFDIRLMKEGRMKGQAFIGFPTEDVAAQ 491
Query: 66 ALRSMQGFPFYDKPMRIQYSKT 87
AL+ + G+ +DKPM IQ++++
Sbjct: 492 ALKHVHGYVLHDKPMVIQFARS 513
>gi|62858877|ref|NP_001016017.1| RNA-binding region (RNP1, RRM) containing 3 [Xenopus (Silurana)
tropicalis]
gi|115530784|emb|CAL49356.1| RNA-binding region (RNP1, RRM) containing 3 [Xenopus (Silurana)
tropicalis]
Length = 527
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 8/82 (9%)
Query: 14 VYVTHISSTDLKKSLYAIFSQF--------GQIMDIVALKTLKMRGQAFVIFKEIASATN 65
+YV ++S +K L IF +F + DI +K +M+GQAF+ F A
Sbjct: 432 LYVKNLSKQAEEKDLKFIFGRFIDFSSETEKNMFDIRLMKEGRMKGQAFIGFPTEDVAAQ 491
Query: 66 ALRSMQGFPFYDKPMRIQYSKT 87
AL+ + G+ +DKPM IQ++++
Sbjct: 492 ALKHVHGYVLHDKPMVIQFARS 513
>gi|367017704|ref|XP_003683350.1| hypothetical protein TDEL_0H02800 [Torulaspora delbrueckii]
gi|359751014|emb|CCE94139.1| hypothetical protein TDEL_0H02800 [Torulaspora delbrueckii]
Length = 116
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 18 HISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYD 77
HI L +LY +FS +G+++ I + + RGQAF+ K I + A+ S+ PF+
Sbjct: 43 HIDIKRLTTNLYLLFSIYGEVIKI-TVNPRRQRGQAFITMKNIDESNLAIISLNNEPFFG 101
Query: 78 KPMRIQYSKTDS 89
KP+ + +S+ ++
Sbjct: 102 KPLHVSFSREET 113
>gi|170583984|ref|XP_001896809.1| RNA binding protein [Brugia malayi]
gi|158595852|gb|EDP34335.1| RNA binding protein, putative [Brugia malayi]
Length = 367
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 169 PPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRL-VPNRHDIAFVEFENEMQSAAAKLA 227
P LF+ NL + +E L +F +PGF +RL N +AFVEF + Q+ A
Sbjct: 278 PACSTLFVANLGDGVTEDELKAVFCAYPGFTRLRLHTRNDTTVAFVEFRDVRQATLVMNA 337
Query: 228 LHGFKITPTH--AMKISFAKK 246
L G +I+ +H ++I +A+
Sbjct: 338 LQGCRISSSHRGGIRIEYARN 358
>gi|125560763|gb|EAZ06211.1| hypothetical protein OsI_28451 [Oryza sativa Indica Group]
Length = 215
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 50/92 (54%), Gaps = 7/92 (7%)
Query: 149 PPVSQPAP-PAPMATAGVP-----EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVR 202
PPV+ +P P P TA P + PP LF+ NL E E L LF+ PG+K+++
Sbjct: 107 PPVAMTSPSPVPGPTAYAPVQNTKDNPPCNTLFIGNLGETVIEEELRSLFSVQPGYKQMK 166
Query: 203 LV-PNRHDIAFVEFENEMQSAAAKLALHGFKI 233
++ +R+ + F+EFE+ ++A L G I
Sbjct: 167 VLRQDRNTVCFIEFEDVNAASAVHHNLQGAVI 198
>gi|218200768|gb|EEC83195.1| hypothetical protein OsI_28448 [Oryza sativa Indica Group]
Length = 215
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 7/89 (7%)
Query: 149 PPVSQPAP-PAPMATAGVP-----EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVR 202
PPV+ +P P P TA P + PP LF+ NL E E L LF+ PG+K+++
Sbjct: 107 PPVAMTSPSPVPGPTAYAPVQNTKDNPPCNTLFIGNLGETVIEEELRSLFSVQPGYKQMK 166
Query: 203 LV-PNRHDIAFVEFENEMQSAAAKLALHG 230
++ +R+ + F+EFE+ ++A L G
Sbjct: 167 VLRQDRNTVCFIEFEDVNAASAVHHNLQG 195
>gi|115452785|ref|NP_001049993.1| Os03g0326600 [Oryza sativa Japonica Group]
gi|108707928|gb|ABF95723.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|113548464|dbj|BAF11907.1| Os03g0326600 [Oryza sativa Japonica Group]
gi|218192743|gb|EEC75170.1| hypothetical protein OsI_11395 [Oryza sativa Indica Group]
Length = 467
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 7/81 (8%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDI----VALKTL---KMRGQAFVIFKEIASATNA 66
+Y+ +++ ++ Y +F + MDI +++K + +MRGQAFV F + A A
Sbjct: 380 LYIKNLAKDVIQDDFYYVFGSVFENMDIARSSLSIKLMQEGRMRGQAFVTFPSVELAQRA 439
Query: 67 LRSMQGFPFYDKPMRIQYSKT 87
L + GF F KPM IQ+ +
Sbjct: 440 LNLVHGFVFKGKPMIIQFGRN 460
>gi|229595477|ref|XP_001017208.3| hypothetical protein TTHERM_00194550 [Tetrahymena thermophila]
gi|225565995|gb|EAR96963.3| hypothetical protein TTHERM_00194550 [Tetrahymena thermophila
SB210]
Length = 616
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 8/81 (9%)
Query: 174 LFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHD------IAFVEFENEMQSAAAKLA 227
L++ +P +++E +S +F FPGF+ VRL+ R FV+FE+ +QS A
Sbjct: 457 LYVDGVPIDSNEREVSHIFRPFPGFQAVRLIRKRTQAGREFYFCFVDFESALQSTIALRT 516
Query: 228 LHGFKIT--PTHAMKISFAKK 246
L G++ T +KIS+A +
Sbjct: 517 LQGYRFDKKDTQGLKISYANE 537
>gi|222624851|gb|EEE58983.1| hypothetical protein OsJ_10687 [Oryza sativa Japonica Group]
Length = 560
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 7/81 (8%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDI----VALKTL---KMRGQAFVIFKEIASATNA 66
+Y+ +++ ++ Y +F + MDI +++K + +MRGQAFV F + A A
Sbjct: 473 LYIKNLAKDVIQDDFYYVFGSVFENMDIARSSLSIKLMQEGRMRGQAFVTFPSVELAQRA 532
Query: 67 LRSMQGFPFYDKPMRIQYSKT 87
L + GF F KPM IQ+ +
Sbjct: 533 LNLVHGFVFKGKPMIIQFGRN 553
>gi|170575326|ref|XP_001893193.1| eukaryotic translation initiation factor 3 subunit 4 [Brugia
malayi]
gi|224488023|sp|A8NS61.1|EIF3G_BRUMA RecName: Full=Eukaryotic translation initiation factor 3 subunit G;
Short=eIF3g; AltName: Full=Eukaryotic translation
initiation factor 3 RNA-binding subunit; Short=eIF-3
RNA-binding subunit; AltName: Full=Eukaryotic
translation initiation factor 3 subunit 4
gi|158600924|gb|EDP37968.1| eukaryotic translation initiation factor 3 subunit 4, putative
[Brugia malayi]
Length = 287
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 159 PMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRH-----DIAFV 213
P T G + +TNLPEE EM L LF V + ++H AFV
Sbjct: 195 PAVTGGAERRSEENTCRVTNLPEECDEMELRALFGTVGTVNRVFIAKDKHTNKPKGFAFV 254
Query: 214 EFENEMQSAAAKLALHGFKI 233
FE+ Q+ AA L+G+K+
Sbjct: 255 TFEHRSQTEAAIQKLNGYKL 274
>gi|323338669|gb|EGA79885.1| Mud1p [Saccharomyces cerevisiae Vin13]
Length = 301
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 62/127 (48%), Gaps = 4/127 (3%)
Query: 121 KSKKKAAKEQARLMQA-QQQQMQALSVQQPPVSQPAPPAPMA-TAGVPEQPPNQILFLTN 178
+S+K E R+++ + ++++ + QQ + Q P + E PPN++L + N
Sbjct: 177 RSRKVEEAEIDRIVKEFETRRLENMKSQQENLKQSQKPLKRTKVSNTMENPPNKVLLIQN 236
Query: 179 LPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHA 238
LP T+E +LS + E+RLV R ++AFVE+E + K L +
Sbjct: 237 LPSGTTEQLLSQILGN-EALVEIRLVSVR-NLAFVEYETIADATKIKNQLGSTYKLQNND 294
Query: 239 MKISFAK 245
+ I FAK
Sbjct: 295 VTIGFAK 301
>gi|225443274|ref|XP_002273578.1| PREDICTED: cell wall integrity protein scw1-like [Vitis vinifera]
Length = 328
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
Query: 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLV-PNRHDIAFVEFENEMQSAAAK 225
+ PP LF+ NL E +E L LF+ PGFK+++++ RH + F+EFE+ +
Sbjct: 219 DNPPCNTLFIGNLGENINEEELRGLFSVQPGFKQMKILRQERHTVCFIEFEDMNTATNVH 278
Query: 226 LALHGFKI--TPTHAMKISFAKK 246
+L G I + + M+I ++K
Sbjct: 279 HSLQGAVIPSSGSVGMRIQYSKN 301
>gi|405951102|gb|EKC19044.1| RNA-binding protein 40 [Crassostrea gigas]
Length = 488
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 8/82 (9%)
Query: 14 VYVTHISSTDLKKSLYAIFSQF--------GQIMDIVALKTLKMRGQAFVIFKEIASATN 65
+Y+ +++ ++ L I+ F I DI +K +M+GQAFV F SA
Sbjct: 394 LYIKNLAKQTTEQDLVNIYGSFVNWDKELEKNIFDIRLMKEGRMKGQAFVTFSNETSAHK 453
Query: 66 ALRSMQGFPFYDKPMRIQYSKT 87
AL+ GF KPM +Q++++
Sbjct: 454 ALKETNGFVLNSKPMAVQFARS 475
>gi|254580765|ref|XP_002496368.1| ZYRO0C16786p [Zygosaccharomyces rouxii]
gi|238939259|emb|CAR27435.1| ZYRO0C16786p [Zygosaccharomyces rouxii]
Length = 272
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 105/228 (46%), Gaps = 37/228 (16%)
Query: 38 IMDIVALKTLKMRGQAFVIFKEIASATNALRSMQ--GFPFYDKPMRIQYSKTDSDVISKI 95
++DI KTL Q F+ F +SA +S Q G + + + IQ +K DS + I
Sbjct: 62 VVDISISKTLT--SQCFITFINESSA----QSFQEKGLTVHGRNIDIQVAKRDSLLGLSI 115
Query: 96 KG-TFMERPKKVRKQPAPVEDPAEAKK-------------SKKKAAKEQARLMQAQQQQM 141
K + ++R K R+Q E ++ S+ + +K+ A + ++++
Sbjct: 116 KNPSLLQRVLKSRRQRLDKEKWVNKRRSRRLRSKLRRKGLSEDEISKQLATQLSKPKREV 175
Query: 142 QALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEV 201
+ S+P + T E PPN++L + LP++ L +F GF EV
Sbjct: 176 KR-QTDDDNTSRPTNAKVVTT----ENPPNKVLLVQGLPQDCQLSELEPIFKN-DGFVEV 229
Query: 202 RLVPNRHDIAFVEFENEMQSAAAKL----ALHGFKITPTHAMKISFAK 245
RLV R +AFVE+++ + A A+L L+ FK H + I FAK
Sbjct: 230 RLVAIRK-VAFVEYDS-ISHATAQLNSMGELYEFK---GHRISIGFAK 272
>gi|207347665|gb|EDZ73762.1| YBR119Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|323334581|gb|EGA75955.1| Mud1p [Saccharomyces cerevisiae AWRI796]
gi|323356076|gb|EGA87881.1| Mud1p [Saccharomyces cerevisiae VL3]
Length = 301
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 62/127 (48%), Gaps = 4/127 (3%)
Query: 121 KSKKKAAKEQARLMQA-QQQQMQALSVQQPPVSQPAPPAPMA-TAGVPEQPPNQILFLTN 178
+S+K E R+++ + ++++ + QQ + Q P + E PPN++L + N
Sbjct: 177 RSRKVEEAEIDRIVKEFETRRLENMKSQQENLKQSQKPLKRTKVSNTMENPPNKVLLIQN 236
Query: 179 LPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHA 238
LP T+E +LS + E+RLV R ++AFVE+E + K L +
Sbjct: 237 LPSGTTEQLLSQILGN-EALVEIRLVSVR-NLAFVEYETIADATKIKNQLGSTYKLQNND 294
Query: 239 MKISFAK 245
+ I FAK
Sbjct: 295 VTIGFAK 301
>gi|151946511|gb|EDN64733.1| U1 snRNP A protein [Saccharomyces cerevisiae YJM789]
gi|190408724|gb|EDV11989.1| U1 snRNP A protein [Saccharomyces cerevisiae RM11-1a]
Length = 298
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 62/127 (48%), Gaps = 4/127 (3%)
Query: 121 KSKKKAAKEQARLMQA-QQQQMQALSVQQPPVSQPAPPAPMA-TAGVPEQPPNQILFLTN 178
+S+K E R+++ + ++++ + QQ + Q P + E PPN++L + N
Sbjct: 174 RSRKVEEAEIDRIVKEFETRRLENMKSQQENLKQSQKPLKRTKVSNTMENPPNKVLLIQN 233
Query: 179 LPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHA 238
LP T+E +LS + E+RLV R ++AFVE+E + K L +
Sbjct: 234 LPSGTTEQLLSQILGN-EALVEIRLVSVR-NLAFVEYETIADATKIKNQLGSTYKLQNND 291
Query: 239 MKISFAK 245
+ I FAK
Sbjct: 292 VTIGFAK 298
>gi|399217955|emb|CCF74842.1| unnamed protein product [Babesia microti strain RI]
Length = 252
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Query: 12 NFVYVTHISSTDLKKSLYAIFSQFGQIMD--IVALKTLKMRGQAFVIFKEIASATNALRS 69
N ++V HI T ++LY F +FG I+ + K + RG FV + S+ A++
Sbjct: 164 NNLFVFHIPCTWNDQNLYEHFCKFGNIISSRVQCDKNGRNRGFGFVSYDNPESSAEAIKH 223
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGT 98
M GF DK +++ + D+D+ K T
Sbjct: 224 MNGFNTGDKYLKVMLKRGDNDICFKCDST 252
>gi|40253748|dbj|BAD05688.1| putative mec-8 [Oryza sativa Japonica Group]
gi|40253912|dbj|BAD05845.1| putative mec-8 [Oryza sativa Japonica Group]
Length = 315
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 7/89 (7%)
Query: 149 PPVSQPAP-PAPMATAGVP-----EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVR 202
PPV+ +P P P TA P + PP LF+ NL E E L LF+ PG+K+++
Sbjct: 207 PPVAMTSPSPVPGPTAYAPVQNTKDNPPCNTLFIGNLGETVIEEELRSLFSVQPGYKQMK 266
Query: 203 LV-PNRHDIAFVEFENEMQSAAAKLALHG 230
++ +R+ + F+EFE+ ++A L G
Sbjct: 267 VLRQDRNTVCFIEFEDVNAASAVHHNLQG 295
>gi|331241775|ref|XP_003333535.1| hypothetical protein PGTG_14957 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309312525|gb|EFP89116.1| small subunit ribosomal protein S19 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 206
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 12 NFVYVTHISSTDLKKSLYAIFSQFGQIMDIVAL---KTLKMRGQAFVIFKEIASATNALR 68
N ++V +++ T SL + F QFG ++D + + +T + RG F+ FKE A+A A+
Sbjct: 32 NKLFVGNLAWTTDSGSLKSAFGQFGDVVDAIVMQDRETGRSRGFGFITFKEEAAAPGAIE 91
Query: 69 SMQGFPFYDKPMRIQYSKT 87
++ G + +R+ Y+ +
Sbjct: 92 ALNGQELDGREIRVNYANS 110
>gi|30686138|ref|NP_683582.2| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|13605613|gb|AAK32800.1|AF361632_1 At3g21211 [Arabidopsis thaliana]
gi|23505943|gb|AAN28831.1| At3g21211/At3g21211 [Arabidopsis thaliana]
gi|26451397|dbj|BAC42798.1| unknown protein [Arabidopsis thaliana]
gi|110740646|dbj|BAE98426.1| hypothetical protein [Arabidopsis thaliana]
gi|222423570|dbj|BAH19754.1| AT3G21215 [Arabidopsis thaliana]
gi|332642956|gb|AEE76477.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 339
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 3/95 (3%)
Query: 155 APPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLV-PNRHDIAFV 213
AP + + + + PP LF+ NL E +E L L + PGFK+++++ RH + F+
Sbjct: 216 APSSYVPVQNIKDNPPCNTLFIGNLGENINEEELRSLLSAQPGFKQMKILRQERHTVCFI 275
Query: 214 EFENEMQSAAAKLALHGFKI--TPTHAMKISFAKK 246
EFE+ + L G I + + M+I ++K
Sbjct: 276 EFEDVNSATNVHHNLQGAVIPSSGSIGMRIQYSKN 310
>gi|193683830|ref|XP_001948838.1| PREDICTED: RNA-binding protein 40-like [Acyrthosiphon pisum]
Length = 436
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 45/82 (54%), Gaps = 8/82 (9%)
Query: 14 VYVTHISSTDLKKSLYAIFSQF--------GQIMDIVALKTLKMRGQAFVIFKEIASATN 65
+Y+ +++ T L L I+ +F G + D+ ++ +M+GQAFV + +A
Sbjct: 351 LYIKNLAKTVLDNDLKYIYKRFLKSGDLKPGTMFDVRLMQEGRMKGQAFVTLPCVENAQQ 410
Query: 66 ALRSMQGFPFYDKPMRIQYSKT 87
AL+ G+ DKPM +Q++++
Sbjct: 411 ALKETNGYILKDKPMIVQFARS 432
>gi|317419755|emb|CBN81791.1| RNA-binding protein 40 [Dicentrarchus labrax]
Length = 511
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 8/85 (9%)
Query: 11 TNFVYVTHISSTDLKKSLYAIFSQF--------GQIMDIVALKTLKMRGQAFVIFKEIAS 62
T +YV +I+ +K L I+ ++ + DIV +K +M+GQAFV S
Sbjct: 410 TCRLYVKNIAKQVEEKDLKYIYGRYINPSSEAERNMFDIVLMKEGRMKGQAFVGLPSEQS 469
Query: 63 ATNALRSMQGFPFYDKPMRIQYSKT 87
A ALR G+ DKP+ +Q++++
Sbjct: 470 AEKALRETNGYVLDDKPLVVQFARS 494
>gi|290878132|emb|CBK39191.1| Mud1p [Saccharomyces cerevisiae EC1118]
Length = 298
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 62/127 (48%), Gaps = 4/127 (3%)
Query: 121 KSKKKAAKEQARLMQA-QQQQMQALSVQQPPVSQPAPPAPMA-TAGVPEQPPNQILFLTN 178
+S+K E R+++ + ++++ + QQ + Q P + E PPN++L + N
Sbjct: 174 RSRKVEEAEIDRIVKEFETRRLENMKSQQENLKQSQKPLKRTKVSNTMENPPNKVLLIQN 233
Query: 179 LPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHA 238
LP T+E +LS + E+RLV R ++AFVE+E + K L +
Sbjct: 234 LPSGTTEQLLSQILGN-EALVEIRLVSVR-NLAFVEYETIADATKIKNQLGSTYKLQNND 291
Query: 239 MKISFAK 245
+ I FAK
Sbjct: 292 VTIGFAK 298
>gi|293331463|ref|NP_001168957.1| uncharacterized protein LOC100382777 [Zea mays]
gi|223974013|gb|ACN31194.1| unknown [Zea mays]
Length = 287
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 12/86 (13%)
Query: 160 MATAGVPEQP----PNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLV--------PNR 207
M G PE P + L++ LP + +S +F F GF+EVRLV +
Sbjct: 172 MGYGGRPEPPLPPDASSTLYIEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHPGGDP 231
Query: 208 HDIAFVEFENEMQSAAAKLALHGFKI 233
H + FV+F+N Q+ A AL G+K
Sbjct: 232 HVLCFVDFDNPAQATIALEALQGYKF 257
>gi|388516627|gb|AFK46375.1| unknown [Medicago truncatula]
Length = 314
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 54/104 (51%), Gaps = 8/104 (7%)
Query: 151 VSQPAPPAPMATAGVP-----EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLV- 204
V PAP + ++ VP + PP LF+ NL E +E + LF+ PGFK+++++
Sbjct: 184 VPMPAPVSIAPSSYVPIQNTKDNPPCNTLFIGNLGENINEEEVRGLFSVQPGFKQMKIIR 243
Query: 205 PNRHDIAFVEFENEMQSAAAKLALHGFKI--TPTHAMKISFAKK 246
RH + F+EFE+ + L G I + + M+I ++K
Sbjct: 244 QERHTVCFIEFEDVNSATNVHHNLQGAVIPSSGSIGMRIQYSKN 287
>gi|154340964|ref|XP_001566435.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134063758|emb|CAM39946.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 114
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 42/66 (63%)
Query: 20 SSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKP 79
S+ +++++LY +QFG + ++ K+ + GQAFV+F ++ +AT A RS+ FY +
Sbjct: 18 SANEVRRALYLYCTQFGPVKAVLYSKSKEFYGQAFVVFTDVGTATTARRSLHDRMFYGRQ 77
Query: 80 MRIQYS 85
++ Y+
Sbjct: 78 IQAFYA 83
>gi|168036104|ref|XP_001770548.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678256|gb|EDQ64717.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 645
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 10 VTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMR---GQAFVIFKEIASATNA 66
V+ +YV + ST + LY IFSQ GQ++ I + L R G A+V + AT A
Sbjct: 22 VSTSLYVGDLESTVSEAQLYEIFSQVGQVVSIRVCRDLITRRSLGYAYVNYNNAQDATRA 81
Query: 67 LRSMQGFPFYDKPMRIQYSKTDSDV 91
L + KP+RI +S D +
Sbjct: 82 LELLNFNAVNGKPIRIMFSHRDPSI 106
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVALKT--LKMRGQAFVIFKEIASATNALRSMQ 71
+Y+ ++ T + L IFS++G I+ ++ + RG FV F AT A+ M
Sbjct: 308 LYLKNLDDTIDDEKLREIFSEYGTIVSCKVMRDPQGQSRGSGFVAFSSPDEATRAVTEMN 367
Query: 72 GFPFYDKPMRIQYSKTDSDVISKIKGTFMER 102
G KP+ + ++ + ++++ F +R
Sbjct: 368 GKMVGSKPLYVALAQRKEERRNRLQAAFAQR 398
>gi|223949569|gb|ACN28868.1| unknown [Zea mays]
Length = 234
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 9/107 (8%)
Query: 149 PPVSQPAP-PAPMATAGVP-----EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVR 202
PPV+ +P P TA P + PP LF+ NL + E L LF+ PGFK+++
Sbjct: 106 PPVAMTSPAPVTGPTAYAPVQNTKDNPPCNTLFIGNLGDTVVEEELRSLFSVQPGFKQMK 165
Query: 203 LV-PNRHDIAFVEFENEMQSAAAKLALHGFKI--TPTHAMKISFAKK 246
++ +R+ + F+EFE+ + + L G I + M+I F+K
Sbjct: 166 VLRQDRNTVCFIEFEDVNAATSVHQTLQGAVIPSSGRGGMRIQFSKN 212
>gi|168018462|ref|XP_001761765.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162687136|gb|EDQ73521.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 427
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 48/80 (60%), Gaps = 4/80 (5%)
Query: 11 TNFVYVTHISSTDLKKSLYAIFSQF---GQIMDIVAL-KTLKMRGQAFVIFKEIASATNA 66
TN VY+ ++++ + L IF +F G+ I L + +M+GQAFV F ++ +AT A
Sbjct: 316 TNTVYIKNLAADVTEPDLIGIFGRFETYGRPKLIYRLMQRGRMKGQAFVTFADVETATKA 375
Query: 67 LRSMQGFPFYDKPMRIQYSK 86
L+ + G+ KPM I++++
Sbjct: 376 LKLVHGYILKAKPMVIEFAR 395
>gi|389593827|ref|XP_003722162.1| conserved hypothetical protein [Leishmania major strain Friedlin]
gi|321438660|emb|CBZ12419.1| conserved hypothetical protein [Leishmania major strain Friedlin]
Length = 114
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 41/64 (64%), Gaps = 2/64 (3%)
Query: 20 SSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKP 79
S+ +++++LY +QFG + ++ K+ + GQAFV+F ++ +AT A RS+ FY +
Sbjct: 18 SANEVRRALYLYCTQFGPVKAVLYSKSKEFYGQAFVVFTDVGTATTARRSLHDRMFYGR- 76
Query: 80 MRIQ 83
RIQ
Sbjct: 77 -RIQ 79
>gi|402592061|gb|EJW85990.1| eukaryotic translation initiation factor 3 subunit G [Wuchereria
bancrofti]
Length = 287
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 159 PMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRH-----DIAFV 213
P T G + +TNLPEE EM L LF V + ++H AFV
Sbjct: 195 PAITGGAERRSEENTCRVTNLPEECDEMELRALFGTVGTVNRVFIAKDKHTNKPKGFAFV 254
Query: 214 EFENEMQSAAAKLALHGFKI 233
FE+ Q+ AA L+G+K+
Sbjct: 255 TFEHRSQTEAAIQKLNGYKL 274
>gi|443689346|gb|ELT91761.1| hypothetical protein CAPTEDRAFT_191651 [Capitella teleta]
Length = 484
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 35/59 (59%)
Query: 32 FSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSD 90
F + G+ I L +M+GQAFV F SA+ AL ++ GF D+PM IQ+++T D
Sbjct: 423 FQEEGEERIIFRLLCGRMKGQAFVRFPNTTSASAALNAINGFRLKDRPMIIQFARTAGD 481
>gi|146092995|ref|XP_001466609.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|398018689|ref|XP_003862509.1| hypothetical protein, conserved [Leishmania donovani]
gi|401415958|ref|XP_003872474.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|134070972|emb|CAM69649.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|322488698|emb|CBZ23945.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322500739|emb|CBZ35816.1| hypothetical protein, conserved [Leishmania donovani]
Length = 114
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 41/64 (64%), Gaps = 2/64 (3%)
Query: 20 SSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKP 79
S+ +++++LY +QFG + ++ K+ + GQAFV+F ++ +AT A RS+ FY +
Sbjct: 18 SANEVRRALYLYCTQFGPVKAVLYSKSKEFYGQAFVVFTDVGTATTARRSLHDRMFYGR- 76
Query: 80 MRIQ 83
RIQ
Sbjct: 77 -RIQ 79
>gi|156836884|ref|XP_001642482.1| hypothetical protein Kpol_322p1 [Vanderwaltozyma polyspora DSM
70294]
gi|156113017|gb|EDO14624.1| hypothetical protein Kpol_322p1 [Vanderwaltozyma polyspora DSM
70294]
Length = 87
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 49/82 (59%), Gaps = 5/82 (6%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ ++S L+ +L+ +FS +G+++DI L ++RGQAF+ A A +
Sbjct: 7 LYIHNLSDGIGMDKLRSNLFLLFSMYGEVIDI-RLDGRQLRGQAFIRMSTPDEANLARIT 65
Query: 70 MQGFPFYDKPMRIQYSKTDSDV 91
+ G PF+ +P++I++SK + V
Sbjct: 66 LNGEPFFGQPLKIEFSKNEMTV 87
>gi|50546775|ref|XP_500857.1| YALI0B13860p [Yarrowia lipolytica]
gi|49646723|emb|CAG83108.1| YALI0B13860p [Yarrowia lipolytica CLIB122]
Length = 113
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 39/70 (55%)
Query: 11 TNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSM 70
N ++V ++ LY +F +FG + I A RG AFV++++I AT A++++
Sbjct: 10 NNILFVKNLPYESTSDELYELFGRFGAVRQIRAGSEKDTRGTAFVVYEDIDDATEAVKTL 69
Query: 71 QGFPFYDKPM 80
GF + ++ +
Sbjct: 70 SGFNYKNRYL 79
>gi|115459296|ref|NP_001053248.1| Os04g0504800 [Oryza sativa Japonica Group]
gi|32490269|emb|CAE05558.1| OSJNBb0116K07.11 [Oryza sativa Japonica Group]
gi|113564819|dbj|BAF15162.1| Os04g0504800 [Oryza sativa Japonica Group]
gi|215695125|dbj|BAG90316.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 659
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMR---GQAFVIFKEIASATNALRSM 70
+YV + ++ LY +FSQ GQ+M + + + R G A+V F A AL +
Sbjct: 41 LYVGDLEASVTDSQLYELFSQAGQVMSVRVCRDISSRRSLGYAYVNFNNPVDAARALELL 100
Query: 71 QGFPFYDKPMRIQYSKTD 88
P KP+R+ YS D
Sbjct: 101 NFAPLNGKPIRVMYSNRD 118
>gi|218195166|gb|EEC77593.1| hypothetical protein OsI_16552 [Oryza sativa Indica Group]
Length = 659
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMR---GQAFVIFKEIASATNALRSM 70
+YV + ++ LY +FSQ GQ+M + + + R G A+V F A AL +
Sbjct: 41 LYVGDLEASVTDSQLYELFSQAGQVMSVRVCRDISSRRSLGYAYVNFNNPVDAARALELL 100
Query: 71 QGFPFYDKPMRIQYSKTD 88
P KP+R+ YS D
Sbjct: 101 NFAPLNGKPIRVMYSNRD 118
>gi|317106693|dbj|BAJ53194.1| JHL03K20.3 [Jatropha curcas]
Length = 642
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 10 VTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMR---GQAFVIFKEIASATNA 66
V+ +YV + + LY +F+Q GQI+ I + L R G +V + + A A
Sbjct: 27 VSTSLYVGDLEQNVTETQLYDLFNQLGQIVSIRVCRDLTSRRSLGYGYVNYNNVHDAAQA 86
Query: 67 LRSMQGFPFYDKPMRIQYSKTD 88
L + P KP+RI YS D
Sbjct: 87 LEVLNFTPVNGKPIRIMYSYRD 108
Score = 40.8 bits (94), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 12 NFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALK--TLKMRGQAFVIFKEIASATNALRS 69
N VYV ++S T ++ L IF ++G I V ++ K R FV F+ A ++ +
Sbjct: 208 NNVYVKNLSETTTEEDLKKIFGEYGAITSAVVMRDGDGKSRCFGFVNFENPDDAARSVEA 267
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTF 99
+ G F +K + ++ S+ ++KG F
Sbjct: 268 LNGKTFDEKEWYVGKAQKKSEREVELKGQF 297
>gi|281211458|gb|EFA85620.1| RNA-binding region RNP-1 domain-containing protein [Polysphondylium
pallidum PN500]
Length = 355
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 174 LFLTNLPEETSEMMLSMLFNQFPGFKEVRLV--PNRHDIAFVEFENEMQSAAAKLALHGF 231
LF++NLP++ +E LS+LF GF VRLV ++ I F +F + + +A A L+GF
Sbjct: 273 LFVSNLPKDVTERELSILFRFMRGFINVRLVQREGKYPICFCDFRDTLSAAGAMEMLNGF 332
Query: 232 KI 233
K+
Sbjct: 333 KM 334
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 169 PPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLAL 228
PP+++LF+ ++P S LF PGF +R P AFVEF++ + +A
Sbjct: 6 PPSKVLFIRDIPPSISNEQFENLFQTLPGFVSIRRKPF---FAFVEFKDSGYATSAMRRH 62
Query: 229 HGFKITP 235
+G++ P
Sbjct: 63 NGYRHHP 69
>gi|70663933|emb|CAE02947.3| OSJNBa0014K14.19 [Oryza sativa Japonica Group]
Length = 657
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMR---GQAFVIFKEIASATNALRSM 70
+YV + ++ LY +FSQ GQ+M + + + R G A+V F A AL +
Sbjct: 41 LYVGDLEASVTDSQLYELFSQAGQVMSVRVCRDISSRRSLGYAYVNFNNPVDAARALELL 100
Query: 71 QGFPFYDKPMRIQYSKTD 88
P KP+R+ YS D
Sbjct: 101 NFAPLNGKPIRVMYSNRD 118
>gi|156846540|ref|XP_001646157.1| hypothetical protein Kpol_1039p50 [Vanderwaltozyma polyspora DSM
70294]
gi|156116830|gb|EDO18299.1| hypothetical protein Kpol_1039p50 [Vanderwaltozyma polyspora DSM
70294]
Length = 296
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 168 QPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLA 227
P N IL + NLP T+E+ L LF Q G KEVRLV R ++AF+E+ N + K
Sbjct: 221 NPANNILLVQNLPNGTTEVQLKELFAQ-TGLKEVRLVSVR-NLAFIEYSNIQNATEIKNK 278
Query: 228 LHGFKITPTHAMKISFAK 245
L + I+FAK
Sbjct: 279 LGTSYNWHDKTISIAFAK 296
>gi|340370502|ref|XP_003383785.1| PREDICTED: RNA-binding protein 39-like [Amphimedon queenslandica]
Length = 497
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVALK---TLKMRGQAFVIFKEIASATNALRSM 70
+YV + + L IFS FG + + ++ T RG AFV F++ SA A+ ++
Sbjct: 252 LYVGSLHYNITEDMLQGIFSPFGNVERVSIMRDTATNVSRGYAFVEFRDSDSAERAMANL 311
Query: 71 QGFPFYDKPMRIQYSKTDSDV--ISKIKGTFME 101
GF +PM++ Y D+ + I + G M+
Sbjct: 312 NGFELAGRPMKVNYGTVDTSLVNIDSLDGEDMD 344
>gi|320170468|gb|EFW47367.1| polypyrimidine tract-binding protein PTB-2 [Capsaspora owczarzaki
ATCC 30864]
Length = 546
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 43/77 (55%)
Query: 169 PPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLAL 228
PP L ++N+P+ E L F ++ RL PN H + V+F + ++ A + +
Sbjct: 466 PPIDTLHVSNIPDNYPEADLVAEFGKYAPVVLFRLFPNNHKMGVVKFGSTDEAMQALVHM 525
Query: 229 HGFKITPTHAMKISFAK 245
+ FKI PT+ +++SF+K
Sbjct: 526 NNFKIGPTNYLRVSFSK 542
>gi|195641146|gb|ACG40041.1| cell wall integrity protein scw1 [Zea mays]
gi|195642380|gb|ACG40658.1| cell wall integrity protein scw1 [Zea mays]
Length = 321
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 9/107 (8%)
Query: 149 PPVSQPAP-PAPMATAGVP-----EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVR 202
PPV+ +P P TA P + PP LF+ NL + E L LF+ PGFK+++
Sbjct: 193 PPVAMTSPAPVTGPTAYAPVQNTKDNPPCNTLFIGNLGDTVVEEELRSLFSVQPGFKQMK 252
Query: 203 LV-PNRHDIAFVEFENEMQSAAAKLALHGFKI--TPTHAMKISFAKK 246
++ +R+ + F+EFE+ + + L G I + M+I F+K
Sbjct: 253 VLRQDRNTVCFIEFEDVNAATSVHQTLQGAVIPSSGRGGMRIQFSKN 299
>gi|226531816|ref|NP_001149394.1| LOC100283020 [Zea mays]
gi|195626938|gb|ACG35299.1| cell wall integrity protein scw1 [Zea mays]
gi|413921012|gb|AFW60944.1| cell wall integrity protein scw1 [Zea mays]
Length = 321
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 9/107 (8%)
Query: 149 PPVSQPAP-PAPMATAGVP-----EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVR 202
PPV+ +P P TA P + PP LF+ NL + E L LF+ PGFK+++
Sbjct: 193 PPVAMTSPAPVTGPTAYAPVQNTKDNPPCNTLFIGNLGDTVVEEELRSLFSVQPGFKQMK 252
Query: 203 LV-PNRHDIAFVEFENEMQSAAAKLALHGFKI--TPTHAMKISFAKK 246
++ +R+ + F+EFE+ + + L G I + M+I F+K
Sbjct: 253 VLRQDRNTVCFIEFEDVNAATSVHQTLQGAVIPSSGRGGMRIQFSKN 299
>gi|330840143|ref|XP_003292080.1| hypothetical protein DICPUDRAFT_89664 [Dictyostelium purpureum]
gi|325077715|gb|EGC31410.1| hypothetical protein DICPUDRAFT_89664 [Dictyostelium purpureum]
Length = 328
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 10/110 (9%)
Query: 136 AQQQQMQALSVQQPPVSQPAPPAPMAT--------AGVPEQPPNQILFLTNLPEETSEMM 187
Q + S P + P P+P T G PP LF++NLP++ +E
Sbjct: 201 GYQSHLNTPSTSSPILLTPHLPSPHHTHFSHHTNSGGHINSPPCPTLFVSNLPKDVTERE 260
Query: 188 LSMLFNQFPGFKEVRLVPNRHDI--AFVEFENEMQSAAAKLALHGFKITP 235
+S+LF GF +RL+ + F +F + +A A L GF++ P
Sbjct: 261 VSILFRFMAGFVGIRLINKEGKLPMCFCDFVDSQSAAMALDFLQGFRMDP 310
>gi|37595358|gb|AAQ94565.1| RNA binding motif protein [Danio rerio]
Length = 277
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 5 LAHICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALK---TLKMRGQAFVIFKEIA 61
+A +++ +++ +K L A FS+FG+I +++ +K T K RG AFV ++ +
Sbjct: 1 MAEADRPGKLFIGGLNTETSEKVLEAYFSKFGRISEVLLMKDRETNKSRGFAFVTYENPS 60
Query: 62 SATNALRSMQGFPFYDKPMRIQ 83
A +A R M G P KP++++
Sbjct: 61 DAKDAAREMNGKPLDGKPIKVE 82
>gi|358337425|dbj|GAA28121.2| regulator of differentiation 1 [Clonorchis sinensis]
Length = 757
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/241 (19%), Positives = 98/241 (40%), Gaps = 51/241 (21%)
Query: 14 VYVTHISSTDLK-KSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQG 72
V+V++++ + +L+ +F +G + + L K A + + A A+ +
Sbjct: 555 VFVSNLNQERITPDTLFTLFGVYGDVQRVKILHNKK--DSAMIQLADCNQAQMAVNYLDK 612
Query: 73 FPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKK------SKKKA 126
P Y K MR SK + I P P +D +EA +++
Sbjct: 613 VPLYGKQMRCTLSKNMAVTI-----------------PVPGKDDSEASAENINQLNREYI 655
Query: 127 AKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEM 186
R + + +Q L P+++L ++NLPE+ +E
Sbjct: 656 GHRLHRFRRPNARYLQNLCA-----------------------PSRVLHISNLPEQVTED 692
Query: 187 MLSMLFNQFPGFK--EVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFA 244
L+ +F + G + V+LV +A V+ ++ ++ +ALH +++ M++SF+
Sbjct: 693 DLTDVFMRVGGLQVEAVKLVKTPKPMALVQLQDVEKAVTGLIALHDYELVDNLHMRVSFS 752
Query: 245 K 245
K
Sbjct: 753 K 753
>gi|331241781|ref|XP_003333538.1| hypothetical protein PGTG_14960 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309312528|gb|EFP89119.1| hypothetical protein PGTG_14960 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 179
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVAL---KTLKMRGQAFVIFKEIASATNALRSM 70
++V +++ T SL + F QFG ++D + + +T + RG F+ FKE A A A+ ++
Sbjct: 10 LFVGNLAWTTDSGSLKSAFGQFGDVIDAIVMQDRETGRSRGFGFITFKEEADAPGAIEAL 69
Query: 71 QGFPFYDKPMRIQYSKT 87
G + +R+ Y+ +
Sbjct: 70 NGQELDGREIRVNYANS 86
>gi|33414511|ref|NP_877970.1| polypyrimidine tract-binding protein [Rattus norvegicus]
gi|29824910|gb|AAO92353.1| SMPTB [Rattus norvegicus]
gi|149028489|gb|EDL83874.1| polypyrimidine tract-binding protein [Rattus norvegicus]
Length = 588
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 87/224 (38%), Gaps = 51/224 (22%)
Query: 26 KSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYS 85
+SL+ +F +G + + L + A V + + A ALR + G Y K + I S
Sbjct: 409 RSLFILFGAYGDVHRVKIL--FNRKENALVQMADGSQAELALRHLNGHKLYGKALCILLS 466
Query: 86 KTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEA--KKSKKKAAKEQARLMQAQQQQMQA 143
K S ++ P++ ++ +D A + + KK +K +
Sbjct: 467 KHQS----------VKLPREGKEDQGLTKDYANSPLHRFKKPGSKNFQNIF--------- 507
Query: 144 LSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGF--KEV 201
PP+ L L+NLP SE L LF+ G+ K
Sbjct: 508 -------------------------PPSATLHLSNLPSLVSEEELKNLFSS-NGYAVKAF 541
Query: 202 RLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAK 245
R P H +A + + ++ A + LHG + H M++SF++
Sbjct: 542 RFFPKNHKMALIRMGSTEEAIQALVDLHGHLLGQNHHMRVSFSR 585
>gi|47086837|ref|NP_997763.1| RNA-binding motif protein, X chromosome [Danio rerio]
gi|82241461|sp|Q7ZWA3.1|RBMX_DANRE RecName: Full=RNA-binding motif protein, X chromosome; AltName:
Full=Heterogeneous nuclear ribonucleoprotein G;
Short=hnRNP G
gi|29436819|gb|AAH49509.1| RNA binding motif protein, X-linked [Danio rerio]
gi|47846286|emb|CAG30733.1| RNA binding motif protein [Danio rerio]
gi|48735158|gb|AAH71326.1| RNA binding motif protein, X-linked [Danio rerio]
Length = 379
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 5 LAHICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALK---TLKMRGQAFVIFKEIA 61
+A +++ +++ +K L A FS+FG+I +++ +K T K RG AFV ++
Sbjct: 1 MAEADRPGKLFIGGLNTETSEKVLEAYFSKFGRISEVLLMKDRETNKSRGFAFVTYENPG 60
Query: 62 SATNALRSMQGFPFYDKPMRIQ 83
A +A R M G P KP++++
Sbjct: 61 DAKDAAREMNGKPLDGKPIKVE 82
>gi|357164563|ref|XP_003580095.1| PREDICTED: polyadenylate-binding protein 2-like [Brachypodium
distachyon]
Length = 661
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 11 TNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMR---GQAFVIFKEIASATNAL 67
T +YV + ++ LY +FSQ GQ++ + + + R G A+V F A AL
Sbjct: 36 TTSLYVGDLEASVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNFSNPMDAARAL 95
Query: 68 RSMQGFPFYDKPMRIQYSKTD 88
+ P +KP+R+ YS D
Sbjct: 96 EMLNFVPLNNKPIRVMYSNRD 116
>gi|225429574|ref|XP_002280068.1| PREDICTED: uncharacterized protein LOC100257637 isoform 1 [Vitis
vinifera]
gi|296081671|emb|CBI20676.3| unnamed protein product [Vitis vinifera]
Length = 239
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 68/158 (43%), Gaps = 40/158 (25%)
Query: 105 KVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAG 164
++ P PVEDP L+ ++ +S P + +P+ +
Sbjct: 88 NIKGYPNPVEDP---------------NLIGQRRDVAHGISPGIPDIERPS-----SFGN 127
Query: 165 VPEQPP----NQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPN--RHD------IAF 212
V PP + ILF+ LP++ + + LF F GFKE+R+V RH + F
Sbjct: 128 VESLPPPVQESNILFVDGLPKDCTRREVGHLFRPFIGFKEIRVVHKEPRHSGDKAMVLCF 187
Query: 213 VEFENEMQSAAAKLALHGFKI------TPTHAMKISFA 244
VEF + S A AL G+K +PT ++I FA
Sbjct: 188 VEFNDASCSRTALEALQGYKFDDKKPDSPT--LRIQFA 223
>gi|296085076|emb|CBI28491.3| unnamed protein product [Vitis vinifera]
Length = 1054
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/236 (21%), Positives = 98/236 (41%), Gaps = 38/236 (16%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGF 73
++V ++S + + +L F QFG+ +D VA + R AF+ FK+ A +A+RS+QGF
Sbjct: 427 LWVGNLSHSISENTLTDPFLQFGE-LDTVAFQ--PGRSYAFINFKQEEDAIHAMRSLQGF 483
Query: 74 PFYDKPMRIQYSKTDSDVISKIKGTFMERPKK----VRKQPAPVEDPAEAKKSKKKAAKE 129
P++I+++K + + +++R + +R P D S +
Sbjct: 484 SVAGMPLKIEFAKAEKSSTASRDEDYLQRRDEQRSTIRGSPFSQRDSRTRHGSPDTFYPD 543
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLS 189
++ + + + + L + P + + E +L
Sbjct: 544 KSSISDRKGEPCEVLWIGFPSLLK-----------------------------VDETILR 574
Query: 190 MLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAK 245
F+ F +++ P R AFV+F + + AK L G K+ + I FAK
Sbjct: 575 KAFSPFGEIEKITSFPGR-SYAFVQFRSVTAACRAKETLQG-KLFGNPRVHICFAK 628
Score = 40.8 bits (94), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 163 AGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSA 222
+G PP++ L++ NL SE L+ F QF V P R AF+ F+ E +
Sbjct: 416 SGRSSHPPSRHLWVGNLSHSISENTLTDPFLQFGELDTVAFQPGR-SYAFINFKQEEDAI 474
Query: 223 AAKLALHGFKITPTHAMKISFAK 245
A +L GF + +KI FAK
Sbjct: 475 HAMRSLQGFSVAGM-PLKIEFAK 496
>gi|363732706|ref|XP_426256.3| PREDICTED: RNA-binding protein 41 [Gallus gallus]
Length = 398
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL--KMRGQAFVIFKEIASATNALRSMQ 71
+YV ++ K + ++F++F Q + + L +MRGQAF+ F +I SA +A+ +
Sbjct: 300 LYVKNLGPRVTMKDMVSLFARFQQDSTPIQFRLLSGRMRGQAFITFPDIQSAQDAMLLVN 359
Query: 72 GFPFYDKPMRIQYSKT 87
G+ KPM I++ K+
Sbjct: 360 GYRLQGKPMVIEFGKS 375
>gi|159473631|ref|XP_001694937.1| predicted protein [Chlamydomonas reinhardtii]
gi|158276316|gb|EDP02089.1| predicted protein [Chlamydomonas reinhardtii]
Length = 1623
Score = 48.1 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 162 TAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQS 221
T +PE PN+ L+L N+P + L LF++F + VR+ P+R + FV F +
Sbjct: 825 TYSLPEGRPNRHLWLGNIPHNVDKAELEALFSRFGPLESVRVFPDR-NFCFVNFVLPQHA 883
Query: 222 AAAKLALHG 230
AAA+LAL G
Sbjct: 884 AAARLALDG 892
>gi|365982733|ref|XP_003668200.1| hypothetical protein NDAI_0A08030 [Naumovozyma dairenensis CBS 421]
gi|343766966|emb|CCD22957.1| hypothetical protein NDAI_0A08030 [Naumovozyma dairenensis CBS 421]
Length = 312
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 163 AGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSA 222
A + PPN++L + +LP + SE ++ LF GF EVRL+ R+ +AFVE+ Q++
Sbjct: 232 ASTSQNPPNKVLLVQHLPSDVSEEDVAELFTS-EGFVEVRLIRVRN-LAFVEYNTIGQAS 289
Query: 223 AAKLALHGFKITPTHAMKISFAK 245
A K L + I FAK
Sbjct: 290 ATKKKLSDIFNWKGKEITIGFAK 312
>gi|356526326|ref|XP_003531769.1| PREDICTED: uncharacterized protein LOC100817421 [Glycine max]
Length = 318
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 56/107 (52%), Gaps = 11/107 (10%)
Query: 150 PVSQPAPPAPMA--TAGVP-----EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVR 202
PV P P AP+A + VP + PP LF+ NL E +E + LF+ PGFK+++
Sbjct: 187 PVPMPTP-APIAAPSTYVPVQNTKDNPPCNTLFIGNLGENINEEEVRGLFSVQPGFKQMK 245
Query: 203 LV-PNRHDIAFVEFENEMQSAAAKLALHGFKI--TPTHAMKISFAKK 246
++ RH + F+EFE+ + L G I + + M+I ++K
Sbjct: 246 ILRQERHTVCFIEFEDVNSATNVHHNLQGAVIPSSGSIGMRIQYSKN 292
>gi|339253564|ref|XP_003372005.1| putative RNA recognition motif protein [Trichinella spiralis]
gi|316967645|gb|EFV52050.1| putative RNA recognition motif protein [Trichinella spiralis]
Length = 2180
Score = 48.1 bits (113), Expect = 0.004, Method: Composition-based stats.
Identities = 66/262 (25%), Positives = 108/262 (41%), Gaps = 44/262 (16%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDI-VALKTLK--MRGQAFVIFKEIASATNALRSM 70
+Y+ I + +L +F Q G+I DI V + L +G AFV + + +SAT A +
Sbjct: 216 IYIGKIPKGIFEDTLIPLFEQCGKIYDIRVMMDPLSGTNKGYAFVTYCDKSSATEAAKKF 275
Query: 71 QGFPFYD-KPMRIQYSKTDSDVI------SKIKGTFMERPKKVRKQPAPVE--------D 115
+G+ + K +R+ S ++ + SK K ME KV + D
Sbjct: 276 EGYEIKNGKRLRVNVSVANTRLFVGNIPKSKGKEDIMEEFSKVSGVQNITDVIMYSNPND 335
Query: 116 PAEAKK---------SKKKAAKEQARLMQAQ-QQQMQALSVQQPPVSQPAPPAPMATAGV 165
P K K A++ + RL ++ + M L V+ M+
Sbjct: 336 PVNKKNRGFCFLEFADHKSASQAKRRLGSSRFRPWMMELVVEWAETQDDVDKETMSKV-- 393
Query: 166 PEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAK 225
+IL+L L + SE L + F+Q+ + V+ + D AFV F Q+ A
Sbjct: 394 ------KILYLRPLKDSVSEEELRVRFSQYGTVERVKRI---KDYAFVHFAEREQAEKAI 444
Query: 226 LALHG--FKITPTHAMKISFAK 245
A+ G F P ++SFAK
Sbjct: 445 EAMKGQEFDGVPC---EVSFAK 463
>gi|221112748|ref|XP_002162771.1| PREDICTED: ELAV-like protein 3-like [Hydra magnipapillata]
Length = 376
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 54/251 (21%), Positives = 103/251 (41%), Gaps = 36/251 (14%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVAL--KTLKMRGQAFVIFKEIASATNALRSMQ 71
+YV+ + T + L +F+ +G I+ I L ++ + RG FV F + A A+ +
Sbjct: 133 LYVSGLPLTCNENDLRELFASYGSIITIKVLYEESGQSRGVGFVRFDKRNDAEAAINGLN 192
Query: 72 G-FPFYD---KPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAA 127
P + KP+ ++++ P + QP ++ A+AK A
Sbjct: 193 NRIPEINGAIKPLTVKFAN----------------PPSQKIQPY-LDILAQAKGLAGSAF 235
Query: 128 KEQARLMQAQQQQMQALSVQQPPVSQPAPP--------APMATAGVPEQPPNQILFLTNL 179
Q L Q S+ P++ P P + ++ P+ +F+ NL
Sbjct: 236 LRQVGLSQLSPINSSGASLTTSPINSPLSPNSSVLRNNLVVNSSNSSLNNPSWCVFVYNL 295
Query: 180 PEETSEMMLSMLFNQFPGFKEVRLVPNRH-----DIAFVEFENEMQSAAAKLALHGFKIT 234
P + SE+ L LF++F + R+V + + FV + + A L L+G+
Sbjct: 296 PSDASELTLFQLFSKFGAIQSTRVVYDENTKKCKGFGFVNMAHYEDATMAILHLNGYCCE 355
Query: 235 PTHAMKISFAK 245
+++SF +
Sbjct: 356 RGKPLQVSFKR 366
>gi|109157111|pdb|2A3J|A Chain A, Structure Of Urndesign, A Complete Computational Redesign
Of Human U1a Protein
Length = 127
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 7 HICVTNFVYVTHIS----STDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIAS 62
H + V +T+I+ L+ LYA+ S G I+DIV + G+A+++F S
Sbjct: 25 HTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQES 84
Query: 63 ATNALRSMQGFPFYDKPMRIQYSKT 87
A + + QG+PF P+ I +S+T
Sbjct: 85 AQAFVEAFQGYPFQGNPLVITFSET 109
>gi|21615411|emb|CAD33925.1| proline rich protein 3 [Cicer arietinum]
Length = 284
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 3/95 (3%)
Query: 155 APPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLV-PNRHDIAFV 213
AP + + + PP LF+ NL E +E + LF+ PGFK+++++ RH + F+
Sbjct: 163 APSSYVPVQNTKDNPPCNTLFIGNLGENINEEEVRGLFSVQPGFKQMKILRQERHTVCFI 222
Query: 214 EFENEMQSAAAKLALHGFKI--TPTHAMKISFAKK 246
EFE+ + L G I + + M+I ++K
Sbjct: 223 EFEDVNSATNVHHNLQGAVIPSSGSVGMRIQYSKN 257
>gi|356521524|ref|XP_003529405.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 651
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
Query: 10 VTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMR---GQAFVIFKEIASATNA 66
VT +YV + LY +F+Q GQ++ + + L R G +V F A A
Sbjct: 29 VTTSLYVGDLDPNVTDAQLYDLFNQLGQVVSVRVCRDLTSRRSLGYGYVNFSNPQDAARA 88
Query: 67 LRSMQGFPFYDKPMRIQYSKTDSDVISKIKGT 98
L + P ++P+RI YS D + +G
Sbjct: 89 LDVLNFTPLNNRPIRIMYSHRDPSIRKSGQGN 120
>gi|393246058|gb|EJD53567.1| RNA-binding domain-containing protein [Auricularia delicata
TFB-10046 SS5]
Length = 139
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 40/72 (55%)
Query: 13 FVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQG 72
++V +++ T + LY +F ++G I + K RG AFV+++++ A NAL + G
Sbjct: 35 ILFVKNLNYTITGEDLYDLFGRYGSIRQVRIGNDAKTRGTAFVVYEDVMDAKNALDHLNG 94
Query: 73 FPFYDKPMRIQY 84
F ++ + + Y
Sbjct: 95 FHLQERYIVVLY 106
>gi|308490983|ref|XP_003107683.1| CRE-CPF-2 protein [Caenorhabditis remanei]
gi|308250552|gb|EFO94504.1| CRE-CPF-2 protein [Caenorhabditis remanei]
Length = 345
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 52/105 (49%), Gaps = 12/105 (11%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVAL---KTLKMRGQAFVIFKEIASATNALRSM 70
V+V +IS ++++ AIF++ G +M I + +T K +G F+ F +I +A A+R +
Sbjct: 20 VFVGNISYDVTEETIRAIFAKAGHVMSIKMVHDRETGKPKGYGFIEFPDINTADTAIRVL 79
Query: 71 QGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVED 115
G+ + +R+ S G ME PAPVE+
Sbjct: 80 NGYELGGRVLRVD---------SAAGGMNMEEFGSTNTGPAPVEE 115
>gi|149246852|ref|XP_001527851.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146447805|gb|EDK42193.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 176
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 43/67 (64%), Gaps = 5/67 (7%)
Query: 27 SLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSK 86
+LY +FS FG D++++K K AF+ F + SA ALRS+Q F+++P++I Y+
Sbjct: 62 NLYILFSAFG---DVISIKLYKC--YAFIAFGLVESAKLALRSLQEEEFFERPLKIGYAL 116
Query: 87 TDSDVIS 93
+S V++
Sbjct: 117 KESKVVA 123
>gi|328708090|ref|XP_003243595.1| PREDICTED: hypothetical protein LOC100569873 [Acyrthosiphon pisum]
Length = 379
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 4/77 (5%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIM--DIVA--LKTLKMRGQAFVIFKEIASATNALRS 69
+YV +I+ + +K L ++F ++ ++ DIV +K KM+GQAF+ F++I A AL
Sbjct: 302 LYVKNIAKSVCEKHLVSVFGKYKELQNADIVYRYMKKGKMKGQAFIEFEKIEVAEKALEE 361
Query: 70 MQGFPFYDKPMRIQYSK 86
G +KP+ IQ+ K
Sbjct: 362 NLGLILEEKPLIIQFGK 378
>gi|30699215|ref|NP_177820.2| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|119360107|gb|ABL66782.1| At1g76940 [Arabidopsis thaliana]
gi|332197785|gb|AEE35906.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 233
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 13/103 (12%)
Query: 156 PPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLV--PNRHD---- 209
PP P+ +P N L++ LP S ++ +F F G++EVRLV ++H
Sbjct: 121 PPEPVGRRNLPSDASN-TLYVEGLPSNCSRREVAHIFRPFVGYREVRLVTKDSKHRNGDP 179
Query: 210 --IAFVEFENEMQSAAAKLALHGFKITPTHA----MKISFAKK 246
+ FV+F N +A A AL G+++ + +++ F++K
Sbjct: 180 IVLCFVDFTNPACAATALSALQGYRMDENESDSKFLRLQFSRK 222
>gi|357467715|ref|XP_003604142.1| RNA-binding protein with multiple splicing [Medicago truncatula]
gi|355505197|gb|AES86339.1| RNA-binding protein with multiple splicing [Medicago truncatula]
Length = 311
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 6/97 (6%)
Query: 151 VSQPAPPAPMATAGVP-----EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLV- 204
V PAP + ++ VP + PP LF+ NL E +E + LF+ PGFK+++++
Sbjct: 184 VPMPAPVSIAPSSYVPIQNTKDNPPCNTLFIGNLGENINEEEVRGLFSVQPGFKQMKIIR 243
Query: 205 PNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKI 241
RH + F+EFE+ + L G I + ++ I
Sbjct: 244 QERHTVCFIEFEDVNSATNVHHNLQGAVIPSSGSIGI 280
>gi|403214086|emb|CCK68587.1| hypothetical protein KNAG_0B01400 [Kazachstania naganishii CBS
8797]
Length = 334
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 101/250 (40%), Gaps = 53/250 (21%)
Query: 37 QIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIK 96
+I+ I + M GQ FV F + SA + + QG F K + I++++ +S +
Sbjct: 96 RILSIARSNSGSMAGQCFVTFVDEHSAEQFMNAFQGMNFRGKRVEIRWAEQES-----LL 150
Query: 97 GTFMERPKKVRK---------------------------------QPAPVEDPAEAKKSK 123
G + +P++ +K PA +ED AK
Sbjct: 151 GLALTQPERFKKVMRIKKLTMEEIVQNKVKRKLRRLRYKLRRKGLDPAQIEDIV-AKVRV 209
Query: 124 KKAAKEQARLMQAQQQQMQALSVQQP------PVSQPAPPAPMATAGVPEQPPNQILFLT 177
E+ + M+ +V QP S P V PP ++L +
Sbjct: 210 DVVDDEEVEETEGNATGME--TVVQPTPKSNTTTSSTTKKVPKGIVDVTANPPAKLLLVQ 267
Query: 178 NLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHG--FKITP 235
LPE T+E L +F+ P ++R+V R +AFVE+ ++SA A L G FK+
Sbjct: 268 QLPETTTETQLRDVFDG-PDLVDIRMVAIRR-LAFVEY-TSIESATAALQKTGTTFKM-D 323
Query: 236 THAMKISFAK 245
H + + +AK
Sbjct: 324 AHDIVVGYAK 333
>gi|356499763|ref|XP_003518706.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 646
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
Query: 10 VTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMR---GQAFVIFKEIASATNA 66
VT +YV + LY +F+Q GQ++ + + L R G +V F A A
Sbjct: 26 VTTSLYVGDLDPNVTDAQLYDLFNQLGQVVSVRVCRDLTSRRSLGYGYVNFSNPQDAARA 85
Query: 67 LRSMQGFPFYDKPMRIQYSKTDSDVISKIKGT 98
L + P ++P+RI YS D + +G
Sbjct: 86 LDVLNFTPLNNRPIRIMYSHRDPSIRKSGQGN 117
>gi|357467717|ref|XP_003604143.1| RNA-binding protein with multiple splicing [Medicago truncatula]
gi|355505198|gb|AES86340.1| RNA-binding protein with multiple splicing [Medicago truncatula]
Length = 309
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 6/97 (6%)
Query: 151 VSQPAPPAPMATAGVP-----EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLV- 204
V PAP + ++ VP + PP LF+ NL E +E + LF+ PGFK+++++
Sbjct: 182 VPMPAPVSIAPSSYVPIQNTKDNPPCNTLFIGNLGENINEEEVRGLFSVQPGFKQMKIIR 241
Query: 205 PNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKI 241
RH + F+EFE+ + L G I + ++ I
Sbjct: 242 QERHTVCFIEFEDVNSATNVHHNLQGAVIPSSGSIGI 278
>gi|224123704|ref|XP_002319145.1| predicted protein [Populus trichocarpa]
gi|222857521|gb|EEE95068.1| predicted protein [Populus trichocarpa]
Length = 346
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 7/83 (8%)
Query: 14 VYVTHISSTDLKKSLYAIF-SQFGQI------MDIVALKTLKMRGQAFVIFKEIASATNA 66
+Y+ ++ + + IF S FG I + + ++ +MRGQAFV F + A A
Sbjct: 259 LYIKNLDKEVVADDFFYIFGSLFGSIDAAKSGLSVKLMQEGRMRGQAFVTFSSVELAHQA 318
Query: 67 LRSMQGFPFYDKPMRIQYSKTDS 89
L + G+ F DKPM IQ+ + S
Sbjct: 319 LNLVNGYVFKDKPMIIQFGRNPS 341
>gi|226492197|ref|NP_001148276.1| LOC100281884 [Zea mays]
gi|195617106|gb|ACG30383.1| nucleic acid binding protein [Zea mays]
Length = 297
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 12/92 (13%)
Query: 166 PEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLV---PNRHD-----IAFVEFEN 217
P + + ILF+ LP + + ++ LF FPGFK++R+V P R + FVEFEN
Sbjct: 187 PSENESNILFVDCLPTDCTRREVAHLFRCFPGFKDIRVVHKEPRRSGDKAYVLCFVEFEN 246
Query: 218 EMQSAAAKLALHGFKIT----PTHAMKISFAK 245
+ AL G++ ++I FA+
Sbjct: 247 AKFARTPMQALQGYRFDDRKPDDRCLEIHFAR 278
>gi|1370048|emb|CAA64866.1| mec-8 [Caenorhabditis elegans]
Length = 312
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 174 LFLTNLPEETSEMMLSMLFNQFPGFKEVRL-VPNRHDIAFVEFENEMQSAAAKLALHGFK 232
LF+ NL E +E L +F F GF +RL N +AFVE+ + ++ A ++L GF+
Sbjct: 230 LFVANLSAEVNEDTLRGVFKAFSGFTRLRLHNKNGSCVAFVEYSDLQKATQAMISLQGFQ 289
Query: 233 ITPTH--AMKISFAKK 246
IT ++I +A+
Sbjct: 290 ITANDRGGLRIEYARN 305
>gi|297835092|ref|XP_002885428.1| hypothetical protein ARALYDRAFT_479641 [Arabidopsis lyrata subsp.
lyrata]
gi|297331268|gb|EFH61687.1| hypothetical protein ARALYDRAFT_479641 [Arabidopsis lyrata subsp.
lyrata]
Length = 339
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 165 VPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLV-PNRHDIAFVEFENEMQSAA 223
+ + PP LF+ NL E +E L L + PGFK+++++ RH + F+EFE+ +
Sbjct: 226 IKDNPPCNTLFIGNLGENINEEELRSLLSAQPGFKQMKILRQERHTVCFIEFEDVNSATN 285
Query: 224 AKLALHGFKI--TPTHAMKISFAKK 246
L G I + + M+I ++K
Sbjct: 286 VHHNLQGAVIPSSGSIGMRIQYSKN 310
>gi|21357707|ref|NP_648037.1| CG13298 [Drosophila melanogaster]
gi|125980386|ref|XP_001354217.1| GA12181 [Drosophila pseudoobscura pseudoobscura]
gi|194752207|ref|XP_001958414.1| GF10910 [Drosophila ananassae]
gi|194867575|ref|XP_001972100.1| GG14070 [Drosophila erecta]
gi|195167582|ref|XP_002024612.1| GL22529 [Drosophila persimilis]
gi|195337891|ref|XP_002035559.1| GM13852 [Drosophila sechellia]
gi|195492249|ref|XP_002093910.1| GE20495 [Drosophila yakuba]
gi|195588202|ref|XP_002083847.1| GD13137 [Drosophila simulans]
gi|32699626|sp|Q9VRV7.1|PM14_DROME RecName: Full=Pre-mRNA branch site p14-like protein
gi|7295357|gb|AAF50675.1| CG13298 [Drosophila melanogaster]
gi|19528453|gb|AAL90341.1| RE19804p [Drosophila melanogaster]
gi|38048139|gb|AAR09972.1| similar to Drosophila melanogaster CG13298, partial [Drosophila
yakuba]
gi|54642523|gb|EAL31270.1| GA12181 [Drosophila pseudoobscura pseudoobscura]
gi|190625696|gb|EDV41220.1| GF10910 [Drosophila ananassae]
gi|190653883|gb|EDV51126.1| GG14070 [Drosophila erecta]
gi|194108017|gb|EDW30060.1| GL22529 [Drosophila persimilis]
gi|194128652|gb|EDW50695.1| GM13852 [Drosophila sechellia]
gi|194180011|gb|EDW93622.1| GE20495 [Drosophila yakuba]
gi|194195856|gb|EDX09432.1| GD13137 [Drosophila simulans]
gi|220948128|gb|ACL86607.1| CG13298-PA [synthetic construct]
gi|220957372|gb|ACL91229.1| CG13298-PA [synthetic construct]
Length = 121
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%)
Query: 10 VTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
V +YV ++ +Y IF +FG I I T + RG AFV++++I A NA
Sbjct: 13 VNRLLYVRNLPYKITSDEMYDIFGKFGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDH 72
Query: 70 MQGFPFYDKPMRIQYSKTD 88
+ GF ++ + + Y +++
Sbjct: 73 LSGFNVCNRYLVVLYYQSN 91
>gi|324509983|gb|ADY44181.1| Protein couch potato [Ascaris suum]
Length = 340
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 174 LFLTNLPEETSEMMLSMLFNQFPGFKEVRL-VPNRHDIAFVEFENEMQSAAAKLALHGFK 232
LF+ NL + +E L +F FPGF +R+ +AFVE+ + Q+ A +L GF+
Sbjct: 258 LFVANLGQSVNEEELKQVFRSFPGFCRLRMHTKGGTSVAFVEYLDVRQATQAMTSLQGFQ 317
Query: 233 ITPTH--AMKISFAKK 246
I+ + M+I +AK
Sbjct: 318 ISSSERGGMRIEYAKN 333
>gi|26450151|dbj|BAC42194.1| unknown protein [Arabidopsis thaliana]
Length = 156
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 13/103 (12%)
Query: 156 PPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLV--PNRHD---- 209
PP P+ +P N L++ LP S ++ +F F G++EVRLV ++H
Sbjct: 44 PPEPVGRRNLPSDASN-TLYVEGLPSNCSRREVAHIFRPFVGYREVRLVTKDSKHRNGDP 102
Query: 210 --IAFVEFENEMQSAAAKLALHGFKITPTHA----MKISFAKK 246
+ FV+F N +A A AL G+++ + +++ F++K
Sbjct: 103 IVLCFVDFTNPACAATALSALQGYRMDENESDSKFLRLQFSRK 145
>gi|17508419|ref|NP_492508.1| Protein MEC-8 [Caenorhabditis elegans]
gi|1369981|emb|CAA64867.1| mec-8 [Caenorhabditis elegans]
gi|3877217|emb|CAB03111.1| Protein MEC-8 [Caenorhabditis elegans]
Length = 312
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 174 LFLTNLPEETSEMMLSMLFNQFPGFKEVRL-VPNRHDIAFVEFENEMQSAAAKLALHGFK 232
LF+ NL E +E L +F F GF +RL N +AFVE+ + ++ A ++L GF+
Sbjct: 230 LFVANLSAEVNEDTLRGVFKAFSGFTRLRLHNKNGSCVAFVEYSDLQKATQAMISLQGFQ 289
Query: 233 ITPTH--AMKISFAKK 246
IT ++I +A+
Sbjct: 290 ITANDRGGLRIEYARN 305
>gi|328876236|gb|EGG24599.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
fasciculatum]
Length = 497
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 62/270 (22%), Positives = 108/270 (40%), Gaps = 51/270 (18%)
Query: 12 NFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALK---TLKMRGQAFVIFKEIASATNALR 68
N V+V I+ ++ L +FS G + + +K + +G FV F ++ A+
Sbjct: 112 NEVFVGGIARNTTEEELQDLFSTIGNVKQVRIMKDRSNGENKGYGFVSFANKSNCKEAVV 171
Query: 69 SMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPV--------------- 113
F K +R+++S+ +K K PK+++K +
Sbjct: 172 QFNNKEFKGKNLRVKFSE------NKRKIFIGNLPKELKKDQLLLILADHSDGITNVDFL 225
Query: 114 EDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGV----PEQP 169
DP + +++ A E QA++ + + SQP V P Q
Sbjct: 226 TDPDNSSRNRGFAFIEYTDYYQAEKARKE--------FSQPNFKIGNCNVTVNWADPIQE 277
Query: 170 PNQ-------ILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPN------RHDIAFVEFE 216
P++ +L++ NLP+ SE + LF ++ G E ++PN R D FV F
Sbjct: 278 PDETIMNQVRVLYIRNLPDSKSEEQVRKLFEEY-GVIEKVIIPNNLPGQQRRDFGFVHFA 336
Query: 217 NEMQSAAAKLALHGFKIT-PTHAMKISFAK 245
N ++ A H IT + +SFAK
Sbjct: 337 NRDEAEATLARHHDTPITYQGRPLSLSFAK 366
>gi|242081063|ref|XP_002445300.1| hypothetical protein SORBIDRAFT_07g008520 [Sorghum bicolor]
gi|241941650|gb|EES14795.1| hypothetical protein SORBIDRAFT_07g008520 [Sorghum bicolor]
Length = 320
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 55/107 (51%), Gaps = 9/107 (8%)
Query: 149 PPVSQPAP-PAPMATAGVP-----EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVR 202
PPV+ +P P TA P + PP LF+ NL + E L LF+ PG+K+++
Sbjct: 192 PPVAMTSPSPVTGPTAYAPVQNTKDNPPCNTLFIGNLGDTVVEEELRSLFSVQPGYKQMK 251
Query: 203 LV-PNRHDIAFVEFENEMQSAAAKLALHGFKI--TPTHAMKISFAKK 246
++ +R+ + F+EFE+ + + L G I + M+I F+K
Sbjct: 252 VLRQDRNTVCFIEFEDVNAATSVHQTLQGAVIPSSGRGGMRIQFSKN 298
>gi|344230515|gb|EGV62400.1| hypothetical protein CANTEDRAFT_109340 [Candida tenuis ATCC 10573]
Length = 126
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVAL-KTLKMRGQAFVIFKEIASATNALRSMQGFPFYD 77
IS + +LY + + FG ++DI+ K+ +MRGQA V+F I A AL +Q F+
Sbjct: 40 ISPETTRANLYLLCTSFGDVIDIIIKPKSKRMRGQAHVVFSNITEAQVALTRLQEQKFFG 99
Query: 78 KPMRIQYSKTDSDVISKI 95
K ++ ++ S +I +I
Sbjct: 100 KSIKAAFAHKKSKLIKRI 117
>gi|312074002|ref|XP_003139774.1| hypothetical protein LOAG_04189 [Loa loa]
gi|307765058|gb|EFO24292.1| hypothetical protein LOAG_04189 [Loa loa]
Length = 187
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 39/75 (52%)
Query: 10 VTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
V +YV ++ + +Y IF +FG + I T + RG AFV++++I A NA
Sbjct: 65 VNRILYVKNLPYKITSEEMYDIFGKFGAVRQIRVGNTAETRGTAFVVYEDIFDAKNACEH 124
Query: 70 MQGFPFYDKPMRIQY 84
+ GF ++ + + Y
Sbjct: 125 LSGFNVSNRYLVVLY 139
>gi|222634881|gb|EEE65013.1| hypothetical protein OsJ_19964 [Oryza sativa Japonica Group]
Length = 265
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 12/83 (14%)
Query: 163 AGVPEQP----PNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPN--RHD------I 210
G+PE P + LF+ +P + + +S +F F GF+EVRLV RH +
Sbjct: 150 GGMPEPPLPPDASNTLFIEGIPTDCARREVSHIFRPFVGFREVRLVSKEARHPGGDPILL 209
Query: 211 AFVEFENEMQSAAAKLALHGFKI 233
FV+FE Q+A A AL G+K
Sbjct: 210 CFVDFETASQAAIAMDALQGYKF 232
>gi|195015240|ref|XP_001984164.1| GH16287 [Drosophila grimshawi]
gi|195377052|ref|XP_002047306.1| GJ12004 [Drosophila virilis]
gi|193897646|gb|EDV96512.1| GH16287 [Drosophila grimshawi]
gi|194154464|gb|EDW69648.1| GJ12004 [Drosophila virilis]
Length = 121
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%)
Query: 10 VTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
V +YV ++ +Y IF +FG I I T + RG AFV++++I A NA
Sbjct: 13 VNRLLYVRNLPYKITSDEMYDIFGKFGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDH 72
Query: 70 MQGFPFYDKPMRIQYSKTD 88
+ GF ++ + + Y +++
Sbjct: 73 LSGFNVCNRYLVVLYYQSN 91
>gi|195427713|ref|XP_002061921.1| GK17258 [Drosophila willistoni]
gi|194158006|gb|EDW72907.1| GK17258 [Drosophila willistoni]
Length = 121
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%)
Query: 10 VTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
V +YV ++ +Y IF +FG I I T + RG AFV++++I A NA
Sbjct: 13 VNRLLYVRNLPYKITSDEMYDIFGKFGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDH 72
Query: 70 MQGFPFYDKPMRIQYSKTD 88
+ GF ++ + + Y +++
Sbjct: 73 LSGFNVCNRYLVVLYYQSN 91
>gi|289743103|gb|ADD20299.1| splicing factor 3B [Glossina morsitans morsitans]
Length = 121
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%)
Query: 10 VTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
V +YV ++ +Y IF +FG I I T + RG AFV++++I A NA
Sbjct: 13 VNRLLYVRNLPYKITSDEMYDIFGKFGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDH 72
Query: 70 MQGFPFYDKPMRIQYSKTD 88
+ GF ++ + + Y +++
Sbjct: 73 LSGFNVCNRYLVVLYYQSN 91
>gi|226496737|ref|NP_001151785.1| LOC100285420 [Zea mays]
gi|195649671|gb|ACG44303.1| polyadenylate-binding protein 2 [Zea mays]
gi|414586484|tpg|DAA37055.1| TPA: polyadenylate-binding protein 2 [Zea mays]
Length = 660
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 11 TNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMR---GQAFVIFKEIASATNAL 67
T +YV + + LY +FSQ GQ++ + + + R G A+V F A AL
Sbjct: 39 TTSLYVGDLEGSVSDSQLYELFSQAGQVVSVRVCRDVTSRRSLGYAYVNFNNPLDAARAL 98
Query: 68 RSMQGFPFYDKPMRIQYSKTD 88
+ P +KP+R+ YS D
Sbjct: 99 EVLNFAPLNNKPIRVMYSNRD 119
>gi|268564730|ref|XP_002639203.1| C. briggsae CBR-MEC-8 protein [Caenorhabditis briggsae]
Length = 305
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 174 LFLTNLPEETSEMMLSMLFNQFPGFKEVRL-VPNRHDIAFVEFENEMQSAAAKLALHGFK 232
LF+ NL E +E L +F F GF +RL N +AFVE+ + ++ A LAL GF+
Sbjct: 223 LFVANLSAEVNEDQLRGVFKAFTGFTRLRLHNKNGSCVAFVEYSDLQKATQAMLALQGFQ 282
Query: 233 ITPTH--AMKISFAKK 246
++ ++I +A+
Sbjct: 283 VSANDRGGLRIEYARN 298
>gi|327289313|ref|XP_003229369.1| PREDICTED: probable RNA-binding protein 23-like [Anolis
carolinensis]
Length = 445
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 9/88 (10%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVALK---TLKMRGQAFVIFKEIASATNALRSM 70
+YV + K+ L IF FG+I IV ++ T + +G F+ F E A AL +
Sbjct: 268 LYVGSLHCNITKEMLRGIFEPFGKIDSIVLMRDQDTGQSKGYGFITFSEAECARRALEQL 327
Query: 71 QGFPFYDKPMRIQYSKTDSDVISKIKGT 98
GF +PMR+ V ++ GT
Sbjct: 328 NGFELAGRPMRV------GQVTERLDGT 349
>gi|242081967|ref|XP_002445752.1| hypothetical protein SORBIDRAFT_07g025090 [Sorghum bicolor]
gi|241942102|gb|EES15247.1| hypothetical protein SORBIDRAFT_07g025090 [Sorghum bicolor]
Length = 203
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 16/89 (17%)
Query: 153 QPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLV-------- 204
+P PP P P+ P L++ LP + +S +F F GF+EVRLV
Sbjct: 93 RPEPPLP------PDASP--TLYIEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHPG 144
Query: 205 PNRHDIAFVEFENEMQSAAAKLALHGFKI 233
+ H + FV+F+N Q+ A AL G+K
Sbjct: 145 GDPHVLCFVDFDNPAQATIALEALQGYKF 173
>gi|324504525|gb|ADY41956.1| Protein couch potato [Ascaris suum]
Length = 340
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 174 LFLTNLPEETSEMMLSMLFNQFPGFKEVRL-VPNRHDIAFVEFENEMQSAAAKLALHGFK 232
LF+ NL + +E L +F FPGF +R+ +AFVE+ + Q+ A +L GF+
Sbjct: 258 LFVANLGQSVNEEELKQVFRSFPGFCRLRMHTKGGTSVAFVEYLDVRQATQAMTSLQGFQ 317
Query: 233 ITPTH--AMKISFAKK 246
I+ + M+I +AK
Sbjct: 318 ISSSERGGMRIEYAKN 333
>gi|300120730|emb|CBK20284.2| unnamed protein product [Blastocystis hominis]
Length = 139
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 68/158 (43%), Gaps = 38/158 (24%)
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
M G ++P+ + ++KT+SD+I K +G F K++ + A+
Sbjct: 1 MNGKVVLNRPVTVTFAKTESDIILKREGRF-----------------TYVKRTFQSYAEI 43
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLS 189
AR M+ + + A + PPN L L +LP ++ +L
Sbjct: 44 HAREMEENEGRAAAARIHN-------------------NPPNNKLILFDLPTTITKEVLL 84
Query: 190 MLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLA 227
+ + GF ++ +VP R IAFV+F N + +A L+
Sbjct: 85 PIVQPYVGFHDLGIVPGR-GIAFVDF-NTIHNAEVCLS 120
>gi|225447446|ref|XP_002266343.1| PREDICTED: uncharacterized protein LOC100249524 [Vitis vinifera]
Length = 953
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGF 73
++V ++S + + +L F QFG+ +D VA + R AF+ FK+ A +A+RS+QGF
Sbjct: 56 LWVGNLSHSISENTLTDPFLQFGE-LDTVAFQ--PGRSYAFINFKQEEDAIHAMRSLQGF 112
Query: 74 PFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVR 107
P++I+++K + + +++R + R
Sbjct: 113 SVAGMPLKIEFAKAEKSSTASRDEDYLQRRDEQR 146
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 163 AGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSA 222
+G PP++ L++ NL SE L+ F QF V P R AF+ F+ E +
Sbjct: 45 SGRSSHPPSRHLWVGNLSHSISENTLTDPFLQFGELDTVAFQPGR-SYAFINFKQEEDAI 103
Query: 223 AAKLALHGFKITPTHAMKISFAK 245
A +L GF + +KI FAK
Sbjct: 104 HAMRSLQGFSVA-GMPLKIEFAK 125
>gi|334183951|ref|NP_001185414.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332197786|gb|AEE35907.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 179
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 13/103 (12%)
Query: 156 PPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLV--PNRHD---- 209
PP P+ +P N L++ LP S ++ +F F G++EVRLV ++H
Sbjct: 67 PPEPVGRRNLPSDASN-TLYVEGLPSNCSRREVAHIFRPFVGYREVRLVTKDSKHRNGDP 125
Query: 210 --IAFVEFENEMQSAAAKLALHGFKITPTHA----MKISFAKK 246
+ FV+F N +A A AL G+++ + +++ F++K
Sbjct: 126 IVLCFVDFTNPACAATALSALQGYRMDENESDSKFLRLQFSRK 168
>gi|366996699|ref|XP_003678112.1| hypothetical protein NCAS_0I00990 [Naumovozyma castellii CBS 4309]
gi|342303983|emb|CCC71767.1| hypothetical protein NCAS_0I00990 [Naumovozyma castellii CBS 4309]
Length = 300
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 8/82 (9%)
Query: 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKL 226
E PPN+IL + +LPE+ ++ + LFN G EVR V RH +AFVE+++ ++ K
Sbjct: 224 ENPPNKILLVQDLPEDATQESIGELFNG-DGLLEVRYVEVRH-LAFVEYDSISHASDVKN 281
Query: 227 AL---HGFKITPTHAMKISFAK 245
L + +K T + I FAK
Sbjct: 282 KLGSPYDWKGT---TISIGFAK 300
>gi|195127001|ref|XP_002007957.1| GI13232 [Drosophila mojavensis]
gi|193919566|gb|EDW18433.1| GI13232 [Drosophila mojavensis]
Length = 121
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%)
Query: 10 VTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
V +YV ++ +Y IF +FG I I T + RG AFV++++I A NA
Sbjct: 13 VNRLLYVRNLPYKITSDEMYDIFGKFGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDH 72
Query: 70 MQGFPFYDKPMRIQYSKTD 88
+ GF ++ + + Y +++
Sbjct: 73 LSGFNVCNRYLVVLYYQSN 91
>gi|357475273|ref|XP_003607922.1| Poly(A)-binding protein [Medicago truncatula]
gi|355508977|gb|AES90119.1| Poly(A)-binding protein [Medicago truncatula]
Length = 654
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 3/93 (3%)
Query: 10 VTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMR---GQAFVIFKEIASATNA 66
VT +YV + LY +F+Q GQ++ + + L R G +V + A A
Sbjct: 32 VTTSLYVGDLDMNVTDSQLYDLFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARA 91
Query: 67 LRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTF 99
L + P ++P+RI YS D + +G
Sbjct: 92 LDVLNFTPLNNRPIRIMYSHRDPSIRKSGQGNI 124
>gi|390602556|gb|EIN11949.1| RNA-binding domain-containing protein [Punctularia strigosozonata
HHB-11173 SS5]
Length = 161
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVALK---TLKMRGQAFVIFKEIASATNALRSM 70
VYV ++S +SL A FS +GQI+D + ++ T + RG FV F A A NA+ S+
Sbjct: 5 VYVGNLSWNTTDESLRAAFSHYGQILDSIVMRDRDTGRSRGFGFVTFSSSAEADNAIASL 64
Query: 71 QGFPFYDKPMRIQ 83
+ +R+
Sbjct: 65 NEQDLDGRRIRVN 77
>gi|405952772|gb|EKC20544.1| Protein couch potato [Crassostrea gigas]
Length = 318
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 54/111 (48%), Gaps = 14/111 (12%)
Query: 140 QMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFK 199
Q+Q S Q P VS A P LF+ NL + +SE L LFN F GF
Sbjct: 194 QVQQTSSQSPGVSM---------AAHTSNSPCSTLFVANLGQFSSEQELKDLFNSFQGFS 244
Query: 200 EVRLVPNRHD--IAFVEFENEMQSAAAKLALHGFKITPTH--AMKISFAKK 246
+R+ N+ +AFVEF++ Q+A A L GF + + ++I +AK
Sbjct: 245 RLRMH-NKGGSPVAFVEFQDVRQAAEAMGRLQGFVLLSSDRGGIRIEYAKN 294
>gi|356514689|ref|XP_003526036.1| PREDICTED: uncharacterized protein LOC100809186 [Glycine max]
Length = 228
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 90/213 (42%), Gaps = 53/213 (24%)
Query: 53 AFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQP-- 110
A I E +++T LRS+ G + + + + YS D TF R V +P
Sbjct: 25 AGYIPSEPSNSTTELRSI-GSDYLQRDIGLFYSADD---------TFGSR---VHSEPVK 71
Query: 111 --APVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQ--PPVSQPAPPAPMATAGVP 166
+P+ DP +KK + LS+ P V+ P + + G+P
Sbjct: 72 GYSPLADPDPSKK-----------------RDTTPLSITHGVPDVNSERPASKSSYDGLP 114
Query: 167 -EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLV---PNRHD-----IAFVEFEN 217
+ ILF+ LP + + + LF F G+K++R+V P R + FVEF +
Sbjct: 115 ISAADSNILFVGGLPNDCTRREVGHLFRPFIGYKDIRVVHKEPRRSGDKAMTLCFVEFVD 174
Query: 218 EMQSAAAKLALHGFKI------TPTHAMKISFA 244
+ A AL G+K +PT +KI FA
Sbjct: 175 SKCALTAMEALQGYKFDDKKPDSPT--LKIEFA 205
>gi|403168962|ref|XP_003328523.2| peptidylprolyl isomerase [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|375167741|gb|EFP84104.2| peptidylprolyl isomerase [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 437
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 63/138 (45%), Gaps = 16/138 (11%)
Query: 12 NFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQ---AFVIFKEIASATNALR 68
N ++V ++S + L IFS+FG I+ +K K AF+ F + A A
Sbjct: 249 NILFVCKLNSITRSEDLELIFSRFGTILSCEVIKDAKTGDSLQYAFIEFDQREDAERAYF 308
Query: 69 SMQGFPFYDKPMRIQY----SKTDSDVISKIKG-------TFMERPKKVRKQPAPVEDPA 117
M G D+ + + + SK SD I K G T+ +RPKK +QP+ P
Sbjct: 309 KMDGVLIDDRRIHVDFSQSVSKLHSDWIFKRTGKRVKPNQTYEQRPKK--RQPSERSPPR 366
Query: 118 EAKKSKKKAAKEQARLMQ 135
+ SK + + + A L++
Sbjct: 367 ARRDSKYEMSFDDADLIE 384
>gi|402226279|gb|EJU06339.1| RNA-binding domain-containing protein [Dacryopinax sp. DJM-731
SS1]
Length = 123
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 39/71 (54%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGF 73
++V +++ T + LY +F ++G I I K RG AFV++ ++ A NAL + GF
Sbjct: 19 LFVKNLNYTITGEDLYDLFGRYGTIRQIRLGNEQKTRGTAFVVYDDVMDAKNALDHLNGF 78
Query: 74 PFYDKPMRIQY 84
++ + + Y
Sbjct: 79 HLQERYIVVLY 89
>gi|453085373|gb|EMF13416.1| hypothetical protein SEPMUDRAFT_148719 [Mycosphaerella populorum
SO2202]
Length = 1179
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Query: 170 PNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALH 229
P + L+L N+P T+ L+++F+QF + R++ ++ FV FEN + +AK+A +
Sbjct: 470 PTRSLWLGNIPSSTTVSSLNVIFSQFGPIEFARVLTHK-SCGFVNFENLQSAISAKIACN 528
Query: 230 GFKITPTHA-MKISFAKK 246
G +I P ++I FAK+
Sbjct: 529 GKEIFPGCGPVRIGFAKE 546
>gi|298204782|emb|CBI25280.3| unnamed protein product [Vitis vinifera]
Length = 299
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Query: 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLV-PNRHDIAFVEFENEMQSAAAK 225
+ PP LF+ NL E +E L LF+ PGFK+++++ RH + F+EFE+ +
Sbjct: 219 DNPPCNTLFIGNLGENINEEELRGLFSVQPGFKQMKILRQERHTVCFIEFEDMNTATNVH 278
Query: 226 LALHGFKI--TPTHAMKISF 243
+L G I + + M+I +
Sbjct: 279 HSLQGAVIPSSGSVGMRIQY 298
>gi|443687814|gb|ELT90688.1| hypothetical protein CAPTEDRAFT_200790 [Capitella teleta]
Length = 440
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 45/85 (52%), Gaps = 8/85 (9%)
Query: 11 TNFVYVTHISSTDLKKSLYAIFSQFGQ--------IMDIVALKTLKMRGQAFVIFKEIAS 62
T +Y+ ++S +K L+ I+ ++ + D+ +K +M+GQAFV ++
Sbjct: 345 TTRLYIKNLSKAVTEKDLHHIYGRYVNWENEQDRLMFDMRLMKEGRMKGQAFVTLPSVSQ 404
Query: 63 ATNALRSMQGFPFYDKPMRIQYSKT 87
A A+R F DKP+ +Q++++
Sbjct: 405 AEKAVRETHAFLLIDKPLVVQFARS 429
>gi|384499818|gb|EIE90309.1| hypothetical protein RO3G_15020 [Rhizopus delemar RA 99-880]
Length = 294
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGF 73
+Y+ ++ ++ L I+S F + + + ++ K+R QAFV F + A AL S G+
Sbjct: 220 LYIKNLHKKCSEQDLQQIYSAFSKDIQVNLMRKGKLRDQAFVTFPDEKVAKLALESTNGY 279
Query: 74 PFYDKPMRIQYSKT 87
+D+PM + +SK+
Sbjct: 280 VLHDRPMAVLFSKS 293
>gi|9280223|dbj|BAB01713.1| unnamed protein product [Arabidopsis thaliana]
Length = 317
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
Query: 155 APPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLV-PNRHDIAFV 213
AP + + + + PP LF+ NL E +E L L + PGFK+++++ RH + F+
Sbjct: 216 APSSYVPVQNIKDNPPCNTLFIGNLGENINEEELRSLLSAQPGFKQMKILRQERHTVCFI 275
Query: 214 EFENEMQSAAAKLALHGFKI--TPTHAMKISF 243
EFE+ + L G I + + M+I +
Sbjct: 276 EFEDVNSATNVHHNLQGAVIPSSGSIGMRIQY 307
>gi|326503608|dbj|BAJ86310.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 746
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 11 TNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMR---GQAFVIFKEIASATNAL 67
T +YV + + LY +FSQ GQ++ + + + R G A+V + A A+
Sbjct: 121 TTSLYVGDLEANVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNYSNPMDAARAM 180
Query: 68 RSMQGFPFYDKPMRIQYSKTD 88
++ P +KP+R+ YS D
Sbjct: 181 EALNFAPLNNKPIRVMYSNRD 201
>gi|324533471|gb|ADY49309.1| Pre-mRNA branch site p14-like protein [Ascaris suum]
Length = 138
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 39/75 (52%)
Query: 10 VTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
V +YV ++ + +Y IF +FG + I T + RG AFV++++I A NA
Sbjct: 16 VNRILYVKNLPYKITSEEMYDIFGKFGAVRQIRVGNTSETRGTAFVVYEDIFDAKNACEH 75
Query: 70 MQGFPFYDKPMRIQY 84
+ GF ++ + + Y
Sbjct: 76 LSGFNVSNRYLVVLY 90
>gi|222640974|gb|EEE69106.1| hypothetical protein OsJ_28175 [Oryza sativa Japonica Group]
Length = 268
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 16/90 (17%)
Query: 152 SQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLV------- 204
++P PP P + L++ LP + +S +F F GF+EVRLV
Sbjct: 157 ARPEPPLPADAS--------STLYVEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHP 208
Query: 205 -PNRHDIAFVEFENEMQSAAAKLALHGFKI 233
+ H + FV+F+N Q+ A AL G+K
Sbjct: 209 GGDPHVLCFVDFDNPAQATLALEALQGYKF 238
>gi|359386152|gb|AEV43365.1| poly A-binding protein 2 [Citrus sinensis]
Length = 652
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 10 VTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMR---GQAFVIFKEIASATNA 66
V+ +YV + + LY +F+Q GQ++ + + L R G +V + AT A
Sbjct: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
Query: 67 LRSMQGFPFYDKPMRIQYSKTD 88
L + P KP+RI YS D
Sbjct: 98 LDELNFTPLNGKPIRIMYSYRD 119
Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Query: 12 NFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQ--AFVIFKEIASATNALRS 69
N VYV ++S T + L IF +FG I ++ + + FV F + A ++ +
Sbjct: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTF 99
+ G F DK + ++ + ++KG F
Sbjct: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKF 308
>gi|413921013|gb|AFW60945.1| hypothetical protein ZEAMMB73_771004 [Zea mays]
Length = 314
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 9/106 (8%)
Query: 149 PPVSQPAP-PAPMATAGVPEQ-----PPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVR 202
PPV+ +P P TA P Q PP LF+ NL + E L LF+ PGFK+++
Sbjct: 193 PPVAMTSPAPVTGPTAYAPVQNTKDNPPCNTLFIGNLGDTVVEEELRSLFSVQPGFKQMK 252
Query: 203 LV-PNRHDIAFVEFENEMQSAAAKLALHGFKI--TPTHAMKISFAK 245
++ +R+ + F+EFE+ + + L G I + M+I F +
Sbjct: 253 VLRQDRNTVCFIEFEDVNAATSVHQTLQGAVIPSSGRGGMRIHFQR 298
>gi|218201560|gb|EEC83987.1| hypothetical protein OsI_30140 [Oryza sativa Indica Group]
Length = 218
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 16/90 (17%)
Query: 152 SQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLV------- 204
++P PP P + L++ LP + +S +F F GF+EVRLV
Sbjct: 107 ARPEPPLPADAS--------STLYVEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHP 158
Query: 205 -PNRHDIAFVEFENEMQSAAAKLALHGFKI 233
+ H + FV+F+N Q+ A AL G+K
Sbjct: 159 GGDPHVLCFVDFDNPAQATLALEALQGYKF 188
>gi|255645608|gb|ACU23298.1| unknown [Glycine max]
Length = 242
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 10/94 (10%)
Query: 148 QPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR 207
Q PV + P P + P+ + L++ LP +++ ++ +F F G++EVRLV
Sbjct: 121 QLPVDAVSRPGPETVSLPPDA--SSTLYVEGLPSDSTRREVAHIFRPFVGYREVRLVSKE 178
Query: 208 --------HDIAFVEFENEMQSAAAKLALHGFKI 233
H + FV+F N +A A AL G+K+
Sbjct: 179 SKHRGGDPHYLCFVDFANPACAATAMSALQGYKV 212
>gi|363744745|ref|XP_003643117.1| PREDICTED: ELAV-like protein 2 isoform 2 [Gallus gallus]
Length = 366
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 53/246 (21%), Positives = 107/246 (43%), Gaps = 37/246 (15%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMD---IVALKTLKMRGQAFVIFKEIASATNALRSM 70
+YV+ + T +K L +FSQ+G+I+ +V T RG F+ F + A A++ +
Sbjct: 134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGMSRGVGFIRFDKRIEAEEAIKGL 193
Query: 71 QGF--PFYDKPMRIQYS-----KTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSK 123
G P +P+ ++++ KT+ ++S++ P R+ PAP+
Sbjct: 194 NGQKPPAATEPITVKFANNPSQKTNQAILSQL----YHSPN--RRYPAPL---------- 237
Query: 124 KKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQP-PNQILFLTNLPEE 182
+QA+ + A V++ P +A +P +F+ NL +
Sbjct: 238 ----AQQAQRFRLDNLLNMAYGVKRFPPMTIDGMTSLAGINIPGHAGTGWCIFVYNLAPD 293
Query: 183 TSEMMLSMLFNQFPGFKEVRLVPNRH-----DIAFVEFENEMQSAAAKLALHGFKITPTH 237
E +L +F F V+++ + + FV N ++A A +L+G+++
Sbjct: 294 ADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGD-R 352
Query: 238 AMKISF 243
+++SF
Sbjct: 353 VLQVSF 358
>gi|71005326|ref|XP_757329.1| hypothetical protein UM01182.1 [Ustilago maydis 521]
gi|46096733|gb|EAK81966.1| hypothetical protein UM01182.1 [Ustilago maydis 521]
Length = 464
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query: 13 FVYVTHISSTDLKKSLYAIFSQFGQIMD--IVALKTLKMRGQAFVIFKEIASATNALRSM 70
V+V ++ +T +++L +F GQ+ +VA ++ FV + ++ASA A+R+M
Sbjct: 30 LVHVANLPATTTERALREMFGSLGQMQSARVVASRSAGGLAYGFVEYVDVASAERAIRTM 89
Query: 71 QGFPFYDKPMRIQYSK 86
G+ ++ P+++ ++K
Sbjct: 90 NGWVWFGTPIKVCWAK 105
>gi|346469585|gb|AEO34637.1| hypothetical protein [Amblyomma maculatum]
Length = 360
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 26 KSLYAIFSQFGQIMDIVALKTL--KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83
+ L A+F +F + V + L K+RGQAFV F +AT AL G+ KP+ I+
Sbjct: 295 RELMALFCRFDEDTCTVKYRLLSGKLRGQAFVTFPSTQAATRALELCNGYVLRGKPIVIE 354
Query: 84 YSKTDS 89
Y + ++
Sbjct: 355 YGRNET 360
>gi|224924352|gb|ACN69126.1| putative RNA-binding protein [Stomoxys calcitrans]
Length = 120
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 42/79 (53%)
Query: 10 VTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
V +YV ++ + +Y IF ++G I I T + RG AFV++++I A NA
Sbjct: 13 VNRLLYVRNLPYKITSEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDH 72
Query: 70 MQGFPFYDKPMRIQYSKTD 88
+ GF ++ + + Y +++
Sbjct: 73 LSGFNVCNRYLVVLYYQSN 91
>gi|409049784|gb|EKM59261.1| hypothetical protein PHACADRAFT_205445 [Phanerochaete carnosa
HHB-10118-sp]
Length = 123
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGF 73
++V +++ + LY +F ++G I I K RG AFV+F ++ A NAL + GF
Sbjct: 18 LFVKNLNYQITGEDLYDLFGRYGSIRQIRVGSEQKTRGTAFVVFDDVMDAKNALDHLNGF 77
Query: 74 PFYDKPMRIQY 84
++ + + Y
Sbjct: 78 HLQERYIVVLY 88
>gi|390601474|gb|EIN10868.1| pre-mRNA branch site protein p14 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 123
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGF 73
++V +++ + LY +F ++G I I K RG AFV+F ++ A NAL + GF
Sbjct: 18 LFVKNLNYAITGEDLYDLFGRYGSIRQIRIGNEQKTRGTAFVVFDDVMDAKNALDHLNGF 77
Query: 74 PFYDKPMRIQY 84
++ + + Y
Sbjct: 78 HLQERYIVVLY 88
>gi|123490485|ref|XP_001325623.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121908525|gb|EAY13400.1| hypothetical protein TVAG_424320 [Trichomonas vaginalis G3]
Length = 100
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 171 NQILFLTNLPEETSEMMLSMLFNQFPGFKEVRL--VPNRHDIAFVEFENEMQSAAAKLAL 228
N+ILF+ NLP L LF+++ ++RL +P+ AFV F+N + + AAK AL
Sbjct: 13 NRILFVRNLPFGIDGDKLYELFSRYGSIYQIRLGCIPSTSTTAFVVFDNVLDAQAAKDAL 72
Query: 229 HGFKI 233
+G+ I
Sbjct: 73 NGYTI 77
>gi|330840158|ref|XP_003292087.1| hypothetical protein DICPUDRAFT_82723 [Dictyostelium purpureum]
gi|325077693|gb|EGC31389.1| hypothetical protein DICPUDRAFT_82723 [Dictyostelium purpureum]
Length = 748
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 83/220 (37%), Gaps = 47/220 (21%)
Query: 31 IFSQFGQIMDIVALKTL-KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTDS 89
+F+ FG D + +K L + A + A L+ + FPF +R+ SK
Sbjct: 561 LFTLFGIYGDPIRVKILFNRKDTALIQMNTSQQAELVLQYLHSFPFKGHNIRVNISK--- 617
Query: 90 DVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQP 149
KV + P P ED E K + + +L
Sbjct: 618 --------------HKVVQLPRPGEDNGELTKDYTGSPMHRFKL---------------- 647
Query: 150 PVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLS----MLFNQFPGFKEVRLVP 205
P + + PP+ L L+NLP+ + + L LF+ K +
Sbjct: 648 ---------PGSKNYLNIHPPSNFLHLSNLPDSNNNLDLENRIRQLFSVHGEVKSFKFFQ 698
Query: 206 NRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAK 245
N +A +E + Q+ + ++LHG+ + A+K+SFAK
Sbjct: 699 NDMKMALLEMASLEQAINSLVSLHGYTLMGDTAIKVSFAK 738
>gi|374256077|gb|AEZ00900.1| putative RNA recognition motif-containing protein, partial [Elaeis
guineensis]
Length = 294
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 43/90 (47%), Gaps = 16/90 (17%)
Query: 152 SQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLV--PNRHD 209
+P PP P Q + LF+ LP + +S +F F GF+EVRLV +RH
Sbjct: 169 GRPEPPLP--------QDASNTLFVEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHP 220
Query: 210 ------IAFVEFENEMQSAAAKLALHGFKI 233
+ FV+F Q+A A AL G+K
Sbjct: 221 GGDPLVLCFVDFSTPAQAAVALDALQGYKF 250
>gi|224113311|ref|XP_002316452.1| predicted protein [Populus trichocarpa]
gi|222865492|gb|EEF02623.1| predicted protein [Populus trichocarpa]
Length = 281
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLV-PNRHDIAFVEFENEMQSAAAK 225
+ PP LF+ NL E +E L LF+ PGFK+++++ RH + F+EFE+ +
Sbjct: 170 DNPPCNTLFIGNLGENINEDELRGLFSVQPGFKQMKVLRQERHTVCFIEFEDLNSATNVH 229
Query: 226 LALHG 230
L G
Sbjct: 230 HTLQG 234
>gi|162462145|ref|NP_001105534.1| meg5 protein [Zea mays]
gi|47078331|gb|AAT09814.1| MEG5 [Zea mays]
Length = 163
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 12/83 (14%)
Query: 160 MATAGVPEQP----PNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLV--------PNR 207
M G PE P + L++ LP + +S +F F GF+EVRLV +
Sbjct: 22 MGYGGRPEPPLPPDASSTLYIEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHPGGDP 81
Query: 208 HDIAFVEFENEMQSAAAKLALHG 230
H + FV+F+N Q+ A AL G
Sbjct: 82 HVLCFVDFDNPAQATIALEALQG 104
>gi|389746772|gb|EIM87951.1| RNA-binding domain-containing protein [Stereum hirsutum FP-91666
SS1]
Length = 123
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGF 73
++V +++ + LY +F ++G I I K RG AFV+F ++ A NAL + GF
Sbjct: 18 LFVKNLNYQITGEDLYDLFGRYGSIRQIRMGNEQKTRGTAFVVFDDVMDAKNALDHLNGF 77
Query: 74 PFYDKPMRIQY 84
++ + + Y
Sbjct: 78 HLQERYIVVLY 88
>gi|224129262|ref|XP_002320541.1| predicted protein [Populus trichocarpa]
gi|222861314|gb|EEE98856.1| predicted protein [Populus trichocarpa]
Length = 827
Score = 46.2 bits (108), Expect = 0.013, Method: Composition-based stats.
Identities = 54/236 (22%), Positives = 96/236 (40%), Gaps = 38/236 (16%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGF 73
++V ++S + + L F QFG +D VA + R AFV F + A A++S+QG+
Sbjct: 10 LWVGNLSHSIEETDLTDEFLQFGD-LDSVAFQ--PGRSYAFVNFNKEEDAIAAIKSLQGY 66
Query: 74 PFYDKPMRIQYSKTDSDVISKIKGTFMERPKK----VRKQPAPVEDPAEAKKSKKKAAKE 129
P P+RI+++K D +++R + +R P D S + +
Sbjct: 67 PLAGNPLRIEFAKADKSSTPSHDEDYLQRRDEQRLTLRGSPFLQRDSRVRNASPETFYPD 126
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLS 189
++++ + + L + P + + EM+L
Sbjct: 127 KSKMSDNSAEPSEVLWIGFPALLK-----------------------------VDEMILR 157
Query: 190 MLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAK 245
F+ F +++ + P R AFV F N + AK L G K+ + I FAK
Sbjct: 158 KAFSPFGEIEKITVFPGR-SYAFVRFTNLTSACRAKETLQG-KLFGNPRVHICFAK 211
>gi|307165867|gb|EFN60222.1| RNA-binding protein 40 [Camponotus floridanus]
Length = 455
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 8/84 (9%)
Query: 11 TNFVYVTHISSTDLKKSLYAIFSQF--------GQIMDIVALKTLKMRGQAFVIFKEIAS 62
+N +Y+ +++ K L+ I+ ++ D+ L+ +M+GQAF+ + I+
Sbjct: 368 SNRLYIKNLAKQVEIKDLHYIYKRYFIAGLEDAEDEYDVRLLQEGRMKGQAFITLQNISQ 427
Query: 63 ATNALRSMQGFPFYDKPMRIQYSK 86
A AL+ G+ DKPM +Q++K
Sbjct: 428 AKKALKETNGYILKDKPMVVQFAK 451
>gi|348522752|ref|XP_003448888.1| PREDICTED: polypyrimidine tract-binding protein 1-like [Oreochromis
niloticus]
Length = 654
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 103/241 (42%), Gaps = 22/241 (9%)
Query: 8 ICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNAL 67
+ V N +Y + +L IFS+FG ++ I+ T + QA + + + ASA A
Sbjct: 289 VVVENLIYPVTL------DALCQIFSKFGTVLRIIIF-TKNNQFQALLQYSDGASAQAAK 341
Query: 68 RSMQGFPFYDK--PMRIQYSKTDSDVI--SKIKGTFMERPKKVRKQPAP-VEDPAEAKKS 122
S+ G Y+ +RI +SK S + + K RP P +E A A
Sbjct: 342 LSLDGQNIYNGCCTLRISFSKLTSLNVKYNNEKSRDFTRPDLPTGDGQPTMEHTAMATAF 401
Query: 123 KKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQ-----PP----NQI 173
A A A ++Q ++ PA P +A+ +P PP + +
Sbjct: 402 AAPGIISAAPYAGATHAFPPAFTLQPAGLAVPALPGALASLSLPGATRLGFPPIPAGHSV 461
Query: 174 LFLTNL-PEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFK 232
L ++NL PE + L +LF + V+++ N+ + A V+ + Q+ A L+G +
Sbjct: 462 LLVSNLNPERVTPHCLFILFGVYGDVMRVKILFNKKENALVQMSDSTQAQLAMSHLNGQR 521
Query: 233 I 233
+
Sbjct: 522 L 522
>gi|242208894|ref|XP_002470296.1| predicted protein [Postia placenta Mad-698-R]
gi|220730603|gb|EED84457.1| predicted protein [Postia placenta Mad-698-R]
Length = 123
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGF 73
++V +++ + LY +F ++G I I K RG AFV+F ++ A NAL + GF
Sbjct: 18 LFVKNLNYQITGEDLYDLFGRYGSIRQIRIGNEQKTRGTAFVVFDDVMDAKNALDHLNGF 77
Query: 74 PFYDKPMRIQY 84
++ + + Y
Sbjct: 78 HLQERYIVVLY 88
>gi|168057049|ref|XP_001780529.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668007|gb|EDQ54623.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 647
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 10 VTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMR---GQAFVIFKEIASATNA 66
V+ VYV + + LY IFSQ G ++ I + L R G A+V + AT A
Sbjct: 22 VSTSVYVGDLEHNVSEAQLYEIFSQTGPVVSIRVCRDLITRRSLGYAYVNYHSAQDATRA 81
Query: 67 LRSMQGFPFYDKPMRIQYSKTD 88
L + P KP+RI +S D
Sbjct: 82 LELLNFTPVNGKPIRIMFSHRD 103
>gi|428166165|gb|EKX35146.1| hypothetical protein GUITHDRAFT_90342 [Guillardia theta CCMP2712]
Length = 128
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 39/75 (52%)
Query: 10 VTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
V ++V ++ + LY +F ++G I I T RG AFV++++I A NA +
Sbjct: 23 VNRILFVRNLPFKITAEELYDLFGRYGAIRQIRKGNTKDTRGTAFVVYEDIYDAKNACDN 82
Query: 70 MQGFPFYDKPMRIQY 84
+ GF D+ + + Y
Sbjct: 83 LSGFHVLDRYLIVLY 97
>gi|390480268|ref|XP_002763353.2| PREDICTED: RNA-binding motif protein, X chromosome-like
[Callithrix jacchus]
Length = 156
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 45/73 (61%), Gaps = 3/73 (4%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVALK---TLKMRGQAFVIFKEIASATNALRSM 70
+++ +++ +K+L A+F ++G+I++++ +K T K RG AFV F+ A A +A R M
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 71 QGFPFYDKPMRIQ 83
G K ++++
Sbjct: 70 NGKSLDGKAIKVE 82
>gi|159119938|ref|XP_001710187.1| RNA binding putative [Giardia lamblia ATCC 50803]
gi|157438305|gb|EDO82513.1| RNA binding putative [Giardia lamblia ATCC 50803]
Length = 188
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 68/154 (44%), Gaps = 18/154 (11%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVAL--KTLKMRGQAFVIFKEIASATNALRSMQ 71
+YV H+ +++ + FSQFG+++ + K K RG +V F A A A +M
Sbjct: 11 IYVGHLPHCFMERPMRCFFSQFGKVLQVRVSRNKEQKSRGYGYVKFASRAVAKIAAETMN 70
Query: 72 GFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAP----VEDPAEAKKSKKKAA 127
+ ++K +++ Y +T +D + G ER QP P + A K+++K
Sbjct: 71 NYLMFNKILKVSYLETWNDNLF-WHGCEYER------QPTPHRAIYREEYNAPKNEEKWE 123
Query: 128 KE-----QARLMQAQQQQMQALSVQQPPVSQPAP 156
E ARL + + + PP+ AP
Sbjct: 124 AEMETVKSARLRTLGKLKDLGYEYEMPPLFYHAP 157
>gi|301763026|ref|XP_002916933.1| PREDICTED: ELAV-like protein 2-like [Ailuropoda melanoleuca]
Length = 427
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 52/246 (21%), Positives = 107/246 (43%), Gaps = 37/246 (15%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMD---IVALKTLKMRGQAFVIFKEIASATNALRSM 70
+YV+ + T +K L +FSQ+G+I+ +V T RG F+ F + A A++ +
Sbjct: 195 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 254
Query: 71 QGF--PFYDKPMRIQYS-----KTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSK 123
G P +P+ ++++ KT+ ++S++ + P R+ P P+
Sbjct: 255 NGQKPPGATEPITVKFANNPSQKTNQAILSQL----YQSPN--RRYPGPL---------- 298
Query: 124 KKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQP-PNQILFLTNLPEE 182
+QA+ + A V++ +A +P P +F+ NL +
Sbjct: 299 ----AQQAQRFRLDNLLNMAYGVKRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPD 354
Query: 183 TSEMMLSMLFNQFPGFKEVRLVPNRH-----DIAFVEFENEMQSAAAKLALHGFKITPTH 237
E +L +F F V+++ + + FV N ++A A +L+G+++
Sbjct: 355 ADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGD-R 413
Query: 238 AMKISF 243
+++SF
Sbjct: 414 VLQVSF 419
>gi|302754900|ref|XP_002960874.1| hypothetical protein SELMODRAFT_21095 [Selaginella
moellendorffii]
gi|302767436|ref|XP_002967138.1| hypothetical protein SELMODRAFT_10868 [Selaginella
moellendorffii]
gi|300165129|gb|EFJ31737.1| hypothetical protein SELMODRAFT_10868 [Selaginella
moellendorffii]
gi|300171813|gb|EFJ38413.1| hypothetical protein SELMODRAFT_21095 [Selaginella
moellendorffii]
Length = 619
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 10 VTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMR---GQAFVIFKEIASATNA 66
V+ +YV + + LY +F+Q GQ++ I + L R G A+V + + AT A
Sbjct: 2 VSTSLYVGDLDPNVSENQLYDLFNQIGQVLSIRVCRDLMTRRSLGYAYVNYNNVQDATRA 61
Query: 67 LRSMQGFPFYDKPMRIQYSKTDSDV 91
L + P K +RI +S D +
Sbjct: 62 LELLNFTPVNGKAVRIMFSHRDPSI 86
>gi|331240967|ref|XP_003333133.1| peptidylprolyl isomerase [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|309312123|gb|EFP88714.1| peptidylprolyl isomerase [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 392
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 63/138 (45%), Gaps = 16/138 (11%)
Query: 12 NFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQ---AFVIFKEIASATNALR 68
N ++V ++S + L +IFS+FG ++ +K K AF+ F + A A
Sbjct: 139 NILFVCKLNSITRSEDLESIFSRFGTLLSCEVIKDAKTGDSLQYAFIEFDQREDAERAYF 198
Query: 69 SMQGFPFYDKPMRIQY----SKTDSDVISKIKG-------TFMERPKKVRKQPAPVEDPA 117
M G D+ + + + SK SD I K G T +RPKK +QP+ P
Sbjct: 199 KMDGVLIDDRRIHVDFSQSVSKLHSDWIFKRTGKRVKPNQTNEQRPKK--RQPSERSPPR 256
Query: 118 EAKKSKKKAAKEQARLMQ 135
+ SK + + + A L++
Sbjct: 257 ARRDSKNEMSFDDADLIE 274
>gi|328860615|gb|EGG09720.1| hypothetical protein MELLADRAFT_95176 [Melampsora larici-populina
98AG31]
Length = 122
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 39/75 (52%)
Query: 10 VTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
V ++V +++ + LY +F ++G I I K RG AFV++++I A NA
Sbjct: 15 VNRILFVKNLNYKTKGEDLYDLFGKYGAIRQIRIGNDAKTRGTAFVVYEDILDAKNAFDH 74
Query: 70 MQGFPFYDKPMRIQY 84
+ GF ++ + + Y
Sbjct: 75 LNGFHLQERYLVVLY 89
>gi|357128643|ref|XP_003565980.1| PREDICTED: RNA-binding protein 40-like [Brachypodium distachyon]
Length = 455
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 7/81 (8%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMD-------IVALKTLKMRGQAFVIFKEIASATNA 66
+Y+ +++ + Y +F + MD I ++ +MRGQAFV F + A A
Sbjct: 368 LYIKNLAKDVVHDDFYYVFGSVFESMDAAKSGLSIKLMQEGRMRGQAFVTFPSVELAQRA 427
Query: 67 LRSMQGFPFYDKPMRIQYSKT 87
L G+ F KPM IQ+ ++
Sbjct: 428 LNLTHGYVFKGKPMIIQFGRS 448
>gi|169860805|ref|XP_001837037.1| pre-mRNA branch site protein p14 [Coprinopsis cinerea
okayama7#130]
gi|116501759|gb|EAU84654.1| pre-mRNA branch site protein p14 [Coprinopsis cinerea
okayama7#130]
Length = 122
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 39/71 (54%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGF 73
++V +++ T + LY +F ++G I I K +G AFV++ ++ A NAL + GF
Sbjct: 18 LFVKNLNYTITGEDLYELFGRYGSIRQIRIGNEAKTKGTAFVVYDDVMDAKNALDHLNGF 77
Query: 74 PFYDKPMRIQY 84
++ + + Y
Sbjct: 78 HLQERYIVVLY 88
>gi|302694161|ref|XP_003036759.1| hypothetical protein SCHCODRAFT_12888 [Schizophyllum commune
H4-8]
gi|300110456|gb|EFJ01857.1| hypothetical protein SCHCODRAFT_12888 [Schizophyllum commune
H4-8]
Length = 121
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 40/71 (56%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGF 73
++V +++ + LY +F ++G+I I K +G AFV+F+++ A NAL + GF
Sbjct: 17 LFVKNLNYQITGEDLYDLFGRYGRIRQIRIGNEQKTKGTAFVVFEDVMDAKNALDHLNGF 76
Query: 74 PFYDKPMRIQY 84
++ + + Y
Sbjct: 77 HLQERYIVVLY 87
>gi|432877561|ref|XP_004073160.1| PREDICTED: RNA-binding motif protein, X chromosome-like isoform 2
[Oryzias latipes]
Length = 380
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 5 LAHICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALK---TLKMRGQAFVIFKEIA 61
+A +++ +++ +K+L FS++G+I++++ +K T K RG AFV F+ A
Sbjct: 1 MAEADRPGKLFIGGLNTETTEKALEQYFSKYGRIVEVILMKDRETNKSRGFAFVTFESPA 60
Query: 62 SATNALRSMQGFPFYDKPMRIQ 83
A +A R M G KP++++
Sbjct: 61 DAKDAAREMNGKSLDGKPIKVE 82
>gi|255538240|ref|XP_002510185.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223550886|gb|EEF52372.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 658
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMR---GQAFVIFKEIASATNALRSM 70
+YV + LY +F+Q GQ++ + + L R G +V + A AL +
Sbjct: 39 LYVGDLDLNVTDSQLYDVFNQVGQVVSVRVCRDLTTRRSLGYGYVNYTSPQDAARALDIL 98
Query: 71 QGFPFYDKPMRIQYSKTDSDV 91
PF +KP+RI YS D +
Sbjct: 99 NFTPFNNKPIRIMYSHRDPSI 119
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 12 NFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQ--AFVIFKEIASATNALRS 69
N VYV ++S + ++ L IF ++G+I V ++ + + FV F+ +A A+ S
Sbjct: 215 NNVYVKNLSESTTEEDLKNIFGEYGEITSAVIMRDADGKSKCFGFVNFENTDAAAKAVES 274
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTF 99
+ G DK + ++ S+ ++K F
Sbjct: 275 LNGKKIDDKEWYVGKAQKKSERELELKSQF 304
>gi|388513795|gb|AFK44959.1| unknown [Lotus japonicus]
Length = 239
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 14/96 (14%)
Query: 148 QPPVSQPAPPAPMATAGVPEQPPN--QILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVP 205
QPPV + P VP PP+ L++ LP ++++ ++ +F F G++EVRLV
Sbjct: 118 QPPVDSVSRPGHET---VP-LPPDASSTLYVEGLPSDSTKREVAHIFRPFVGYREVRLVT 173
Query: 206 --NRHD------IAFVEFENEMQSAAAKLALHGFKI 233
++H + FV+FEN +A A AL G+K+
Sbjct: 174 KESKHRGGDPLILCFVDFENPACAATALSALQGYKV 209
>gi|281349018|gb|EFB24602.1| hypothetical protein PANDA_005072 [Ailuropoda melanoleuca]
gi|351703220|gb|EHB06139.1| ELAV-like protein 2 [Heterocephalus glaber]
gi|355567720|gb|EHH24061.1| Hu-antigen B [Macaca mulatta]
gi|355753294|gb|EHH57340.1| Hu-antigen B [Macaca fascicularis]
gi|431914785|gb|ELK15810.1| ELAV-like protein 2 [Pteropus alecto]
Length = 387
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 53/247 (21%), Positives = 111/247 (44%), Gaps = 39/247 (15%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMD---IVALKTLKMRGQAFVIFKEIASATNALRSM 70
+YV+ + T +K L +FSQ+G+I+ +V T RG F+ F + A A++ +
Sbjct: 155 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 214
Query: 71 QGF--PFYDKPMRIQYS-----KTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSK 123
G P +P+ ++++ KT+ ++S++ + P R+ P P+
Sbjct: 215 NGQKPPGATEPITVKFANNPSQKTNQAILSQL----YQSPN--RRYPGPL---------- 258
Query: 124 KKAAKEQARLMQAQQQQMQALSVQQ-PPVSQPAPPAPMATAGVPEQP-PNQILFLTNLPE 181
+QA+ + A V++ P++ + +A +P P +F+ NL
Sbjct: 259 ----AQQAQRFRLDNLLNMAYGVKRFSPMTIDGMTS-LAGINIPGHPGTGWCIFVYNLAP 313
Query: 182 ETSEMMLSMLFNQFPGFKEVRLVPNRH-----DIAFVEFENEMQSAAAKLALHGFKITPT 236
+ E +L +F F V+++ + + FV N ++A A +L+G+++
Sbjct: 314 DADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGD- 372
Query: 237 HAMKISF 243
+++SF
Sbjct: 373 RVLQVSF 379
>gi|326511990|dbj|BAJ95976.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 530
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 11 TNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMR---GQAFVIFKEIASATNAL 67
T +YV + + LY +FSQ GQ++ + + + R G A+V + A A+
Sbjct: 121 TTSLYVGDLEANVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNYSNPMDAARAM 180
Query: 68 RSMQGFPFYDKPMRIQYSKTD 88
++ P +KP+R+ YS D
Sbjct: 181 EALNFAPLNNKPIRVMYSNRD 201
>gi|256086132|ref|XP_002579259.1| nucleolysin tia-1 [Schistosoma mansoni]
gi|353232225|emb|CCD79580.1| putative nucleolysin tia-1 [Schistosoma mansoni]
Length = 547
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 55/237 (23%), Positives = 89/237 (37%), Gaps = 68/237 (28%)
Query: 18 HISSTDL-----KKSLYAIFSQFGQIMDIVALK---TLKMRGQAFVIFKEIASATNALRS 69
HI DL ++L A FS FG I + +K T K +G FV + A A+R
Sbjct: 34 HIFVGDLAPEVQDETLLAAFSNFGTITECKIIKDMHTQKPKGYGFVAYATRQEAERAIRI 93
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
M G +I GT + +R A +DPA+ K +
Sbjct: 94 MNG---------------------QIIGT-----RAIRTNWAVRKDPADQAKDHRP---- 123
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLS 189
+ L V S N +++ + E +E +L
Sbjct: 124 -----------LNYLEVFNASSST-----------------NTTIYVGGITNELTEKLLQ 155
Query: 190 MLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
F QF KE+R+ ++ +F+ F++ + + A + +HG KI A K S+ K+
Sbjct: 156 DSFKQFGEIKEIRIFKDK-GFSFIRFDSHVAATQAIVTMHG-KIVGDQACKCSWGKE 210
>gi|348041233|ref|NP_775431.2| ELAV-like protein 2 [Rattus norvegicus]
gi|149044491|gb|EDL97750.1| rCG53485, isoform CRA_b [Rattus norvegicus]
Length = 388
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 53/247 (21%), Positives = 111/247 (44%), Gaps = 39/247 (15%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMD---IVALKTLKMRGQAFVIFKEIASATNALRSM 70
+YV+ + T +K L +FSQ+G+I+ +V T RG F+ F + A A++ +
Sbjct: 156 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 215
Query: 71 QGF--PFYDKPMRIQYS-----KTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSK 123
G P +P+ ++++ KT+ ++S++ + P R+ P P+
Sbjct: 216 NGQKPPGATEPITVKFANNPSQKTNQAILSQL----YQSPN--RRYPGPL---------- 259
Query: 124 KKAAKEQARLMQAQQQQMQALSVQQ-PPVSQPAPPAPMATAGVPEQP-PNQILFLTNLPE 181
+QA+ + A V++ P++ + +A +P P +F+ NL
Sbjct: 260 ----AQQAQRFRLDNLLNMAYGVKRFSPMTIDGMTS-LAGINIPGHPGTGWCIFVYNLAP 314
Query: 182 ETSEMMLSMLFNQFPGFKEVRLVPNRH-----DIAFVEFENEMQSAAAKLALHGFKITPT 236
+ E +L +F F V+++ + + FV N ++A A +L+G+++
Sbjct: 315 DADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGD- 373
Query: 237 HAMKISF 243
+++SF
Sbjct: 374 RVLQVSF 380
>gi|440791045|gb|ELR12299.1| RNA recognition motif domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 401
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 10/86 (11%)
Query: 14 VYVTHISSTDLKKSLYAIFSQF-------GQIMDIVALKTL--KMRGQAFVIFKEIASAT 64
+Y+ +++ T K+ L IF F Q D + + L +MRGQAFV F + A
Sbjct: 302 LYIKNLAETTTKEDLVRIFLSFQKPAEELRQDRDYLEFRLLQGRMRGQAFVTFPSVEDAV 361
Query: 65 NALRSMQGFPFYD-KPMRIQYSKTDS 89
AL ++ GF F + KP+ I Y K ++
Sbjct: 362 AALAAVNGFVFKEGKPLIIHYGKGEN 387
>gi|321478268|gb|EFX89225.1| hypothetical protein DAPPUDRAFT_230136 [Daphnia pulex]
Length = 122
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 10 VTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
V +YV ++ + +Y IF ++G I I T + RG AFV++++I A NA
Sbjct: 17 VNRILYVRNLPYKITSEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDH 76
Query: 70 MQGFPFYDKPMRIQY-------SKTDSD 90
+ GF ++ + + Y K D+D
Sbjct: 77 LSGFNVCNRYLVVLYYQPTKAFKKVDTD 104
>gi|297743789|emb|CBI36672.3| unnamed protein product [Vitis vinifera]
Length = 263
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
Query: 14 VYVTHISSTDLKKSLYAIF-SQFGQI------MDIVALKTLKMRGQAFVIFKEIASATNA 66
+Y+ +++ + Y IF S FG + + + ++ +MRGQAFV F + A +A
Sbjct: 176 LYIKNLAKDVVVDDFYFIFGSLFGSVDAAKSGLSVKLMQEGRMRGQAFVTFPSVELAHHA 235
Query: 67 LRSMQGFPFYDKPMRIQYSKT 87
L + G+ F KPM IQ+ +
Sbjct: 236 LNVVNGYVFKGKPMIIQFGRN 256
>gi|392568043|gb|EIW61217.1| RNA-binding domain-containing protein [Trametes versicolor
FP-101664 SS1]
Length = 123
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGF 73
++V +++ + LY +F ++G I I K RG AFV+F ++ A NAL + GF
Sbjct: 18 LFVKNLNYQITGEDLYDLFGRYGSIRQIRIGNDQKSRGTAFVVFDDVMDAKNALDHLNGF 77
Query: 74 PFYDKPMRIQY 84
++ + + Y
Sbjct: 78 HLQERYIVVLY 88
>gi|343958808|dbj|BAK63259.1| cold-inducible RNA-binding protein [Pan troglodytes]
Length = 225
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVALK---TLKMRGQAFVIFKEIASATNALRSM 70
++V +S ++SL +FS++GQI ++V +K T + RG FV F+ I A +A+ +M
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGSGFVTFENIDDAKDAMMAM 67
Query: 71 QGFPFYDKPMRIQYSKTDSDVISK 94
G + +R+ + SD S+
Sbjct: 68 NGKSVDGRQIRVDQAGKSSDNRSR 91
>gi|46592818|ref|NP_997568.1| ELAV-like protein 2 isoform 1 [Mus musculus]
gi|29294744|gb|AAH49125.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B) [Mus musculus]
gi|34849537|gb|AAH58393.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B) [Mus musculus]
Length = 373
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 53/247 (21%), Positives = 111/247 (44%), Gaps = 39/247 (15%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMD---IVALKTLKMRGQAFVIFKEIASATNALRSM 70
+YV+ + T +K L +FSQ+G+I+ +V T RG F+ F + A A++ +
Sbjct: 141 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 200
Query: 71 QGF--PFYDKPMRIQYS-----KTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSK 123
G P +P+ ++++ KT+ ++S++ + P R+ P P+
Sbjct: 201 NGQKPPGATEPITVKFANNPSQKTNQAILSQL----YQSPN--RRYPGPL---------- 244
Query: 124 KKAAKEQARLMQAQQQQMQALSVQQ-PPVSQPAPPAPMATAGVPEQP-PNQILFLTNLPE 181
+QA+ + A V++ P++ + +A +P P +F+ NL
Sbjct: 245 ----AQQAQRFRLDNLLNMAYGVKRFSPMTIDGMTS-LAGINIPGHPGTGWCIFVYNLAP 299
Query: 182 ETSEMMLSMLFNQFPGFKEVRLVPNRH-----DIAFVEFENEMQSAAAKLALHGFKITPT 236
+ E +L +F F V+++ + + FV N ++A A +L+G+++
Sbjct: 300 DADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGD- 358
Query: 237 HAMKISF 243
+++SF
Sbjct: 359 RVLQVSF 365
>gi|119578987|gb|EAW58583.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B), isoform CRA_b [Homo sapiens]
Length = 373
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 53/247 (21%), Positives = 111/247 (44%), Gaps = 39/247 (15%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMD---IVALKTLKMRGQAFVIFKEIASATNALRSM 70
+YV+ + T +K L +FSQ+G+I+ +V T RG F+ F + A A++ +
Sbjct: 141 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 200
Query: 71 QGF--PFYDKPMRIQYS-----KTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSK 123
G P +P+ ++++ KT+ ++S++ + P R+ P P+
Sbjct: 201 NGQKPPGATEPITVKFANNPSQKTNQAILSQL----YQSPN--RRYPGPL---------- 244
Query: 124 KKAAKEQARLMQAQQQQMQALSVQQ-PPVSQPAPPAPMATAGVPEQP-PNQILFLTNLPE 181
+QA+ + A V++ P++ + +A +P P +F+ NL
Sbjct: 245 ----AQQAQRFRLDNLLNMAYGVKRFSPMTIDGMTS-LAGINIPGHPGTGWCIFVYNLAP 299
Query: 182 ETSEMMLSMLFNQFPGFKEVRLVPNRH-----DIAFVEFENEMQSAAAKLALHGFKITPT 236
+ E +L +F F V+++ + + FV N ++A A +L+G+++
Sbjct: 300 DADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGD- 358
Query: 237 HAMKISF 243
+++SF
Sbjct: 359 RVLQVSF 365
>gi|90093337|ref|NP_001035019.1| RNA-binding protein 40 [Danio rerio]
gi|89130616|gb|AAI14289.1| RNA-binding region (RNP1, RRM) containing 3 [Danio rerio]
Length = 505
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 8/85 (9%)
Query: 11 TNFVYVTHISSTDLKKSLYAIFSQFGQI--------MDIVALKTLKMRGQAFVIFKEIAS 62
T +YV +++ +K L I+ ++ I DIV +K +M+GQAF+ S
Sbjct: 404 TCRLYVKNVAKHVEEKDLKFIYGRYIDISSEEERNMFDIVLMKEGRMKGQAFIGLPSERS 463
Query: 63 ATNALRSMQGFPFYDKPMRIQYSKT 87
A AL+ G+ DKP+ +Q++++
Sbjct: 464 AQKALKETNGYVLKDKPLVVQFARS 488
>gi|401839448|gb|EJT42673.1| MUD1-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 227
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 58/113 (51%), Gaps = 13/113 (11%)
Query: 139 QQMQALSVQQPPVSQPAPPAPMAT-AGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPG 197
++++ + Q+ +P + A + E PPN++L + NLP T+E LS +
Sbjct: 122 RRLEKMESQREKPKKPQESSKQAKMSNTIENPPNRVLLVQNLPSGTTEQSLSQILGN-ES 180
Query: 198 FKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMK-----ISFAK 245
E+RLV R ++AFVE+ + S A K+ H + PT+ +K I FAK
Sbjct: 181 LLEIRLVSVR-NLAFVEY--KTVSDATKIKNH---LGPTYKVKNNDVTIGFAK 227
>gi|156546831|ref|XP_001606302.1| PREDICTED: pre-mRNA branch site p14-like protein-like [Nasonia
vitripennis]
Length = 125
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 42/79 (53%)
Query: 10 VTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
V +Y+ ++ + +Y IF ++G I I T + RG AFV++++I A NA
Sbjct: 18 VNRVLYIRNLPYKITAEEMYDIFGKYGAIRQIRVGNTAETRGTAFVVYEDIFDAKNACDH 77
Query: 70 MQGFPFYDKPMRIQYSKTD 88
+ GF ++ + + Y +++
Sbjct: 78 LSGFNVCNRYLVVLYYQSN 96
>gi|115511032|ref|NP_004423.2| ELAV-like protein 2 isoform a [Homo sapiens]
gi|197097794|ref|NP_001127414.1| ELAV-like protein 2 [Pongo abelii]
gi|149736900|ref|XP_001498035.1| PREDICTED: ELAV-like protein 2 isoform 1 [Equus caballus]
gi|291383145|ref|XP_002708096.1| PREDICTED: ELAV-like 2-like isoform 1 [Oryctolagus cuniculus]
gi|296190038|ref|XP_002743026.1| PREDICTED: ELAV-like protein 2 isoform 2 [Callithrix jacchus]
gi|311245695|ref|XP_001924617.2| PREDICTED: ELAV-like protein 2 isoform 1 [Sus scrofa]
gi|332229737|ref|XP_003264044.1| PREDICTED: ELAV-like protein 2 isoform 2 [Nomascus leucogenys]
gi|332831660|ref|XP_520515.3| PREDICTED: ELAV-like protein 2 isoform 3 [Pan troglodytes]
gi|345777488|ref|XP_865062.2| PREDICTED: ELAV-like protein 2 isoform 3 [Canis lupus familiaris]
gi|402897261|ref|XP_003911687.1| PREDICTED: ELAV-like protein 2 isoform 1 [Papio anubis]
gi|403272638|ref|XP_003928159.1| PREDICTED: ELAV-like protein 2 isoform 1 [Saimiri boliviensis
boliviensis]
gi|426220513|ref|XP_004004459.1| PREDICTED: ELAV-like protein 2 isoform 1 [Ovis aries]
gi|426361461|ref|XP_004047929.1| PREDICTED: ELAV-like protein 2 isoform 1 [Gorilla gorilla gorilla]
gi|75070704|sp|Q5R9Z6.1|ELAV2_PONAB RecName: Full=ELAV-like protein 2
gi|93141258|sp|Q12926.2|ELAV2_HUMAN RecName: Full=ELAV-like protein 2; AltName: Full=ELAV-like neuronal
protein 1; AltName: Full=Hu-antigen B; Short=HuB;
AltName: Full=Nervous system-specific RNA-binding
protein Hel-N1
gi|55729364|emb|CAH91414.1| hypothetical protein [Pongo abelii]
gi|119578989|gb|EAW58585.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B), isoform CRA_d [Homo sapiens]
gi|261860488|dbj|BAI46766.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like protein 2
[synthetic construct]
gi|380784355|gb|AFE64053.1| ELAV-like protein 2 isoform a [Macaca mulatta]
Length = 359
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 53/247 (21%), Positives = 111/247 (44%), Gaps = 39/247 (15%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMD---IVALKTLKMRGQAFVIFKEIASATNALRSM 70
+YV+ + T +K L +FSQ+G+I+ +V T RG F+ F + A A++ +
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query: 71 QGF--PFYDKPMRIQYS-----KTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSK 123
G P +P+ ++++ KT+ ++S++ + P R+ P P+
Sbjct: 187 NGQKPPGATEPITVKFANNPSQKTNQAILSQL----YQSPN--RRYPGPL---------- 230
Query: 124 KKAAKEQARLMQAQQQQMQALSVQQ-PPVSQPAPPAPMATAGVPEQP-PNQILFLTNLPE 181
+QA+ + A V++ P++ + +A +P P +F+ NL
Sbjct: 231 ----AQQAQRFRLDNLLNMAYGVKRFSPMTIDGMTS-LAGINIPGHPGTGWCIFVYNLAP 285
Query: 182 ETSEMMLSMLFNQFPGFKEVRLVPNRH-----DIAFVEFENEMQSAAAKLALHGFKITPT 236
+ E +L +F F V+++ + + FV N ++A A +L+G+++
Sbjct: 286 DADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGD- 344
Query: 237 HAMKISF 243
+++SF
Sbjct: 345 RVLQVSF 351
>gi|432877559|ref|XP_004073159.1| PREDICTED: RNA-binding motif protein, X chromosome-like isoform 1
[Oryzias latipes]
Length = 386
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 5 LAHICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALK---TLKMRGQAFVIFKEIA 61
+A +++ +++ +K+L FS++G+I++++ +K T K RG AFV F+ A
Sbjct: 1 MAEADRPGKLFIGGLNTETTEKALEQYFSKYGRIVEVILMKDRETNKSRGFAFVTFESPA 60
Query: 62 SATNALRSMQGFPFYDKPMRIQ 83
A +A R M G KP++++
Sbjct: 61 DAKDAAREMNGKSLDGKPIKVE 82
>gi|324504709|gb|ADY42030.1| Regulator of differentiation 1 [Ascaris suum]
Length = 560
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 52/245 (21%), Positives = 99/245 (40%), Gaps = 51/245 (20%)
Query: 7 HICVTNFVYVTHISSTDLKK-SLYAIFSQFGQIMDIVALKTL-KMRGQAFVIFKEIASAT 64
H+ V N V +S+ D K + A+F+ FG D+ +K L + A + + E A
Sbjct: 358 HVGVLNISPVILVSNLDENKITPDALFTLFGVYGDVQRVKILFNKKDNALIQYAEPQQAQ 417
Query: 65 NALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEA--KKS 122
A++ + ++DK +R+ SK + ++ PK+ + D +++ +
Sbjct: 418 LAIQHLDKVRWHDKQIRVATSKHSN----------VQMPKEGQPDAGLTRDYSQSPLHRF 467
Query: 123 KKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEE 182
KK +K + PP+ L L+N+P
Sbjct: 468 KKPGSKNYMNIY----------------------------------PPSATLHLSNIPPN 493
Query: 183 TSEMMLSMLFNQFPGF--KEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMK 240
+E L+ F Q GF K + P H +A ++ + + A + +H FK+ ++
Sbjct: 494 ITEEYLTSAFEQ-RGFTPKGFKFFPKDHKMALLQLNDIETAIEALIEMHNFKLAENAHLR 552
Query: 241 ISFAK 245
+SF+K
Sbjct: 553 VSFSK 557
>gi|62088168|dbj|BAD92531.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B) variant [Homo sapiens]
Length = 367
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 53/247 (21%), Positives = 111/247 (44%), Gaps = 39/247 (15%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMD---IVALKTLKMRGQAFVIFKEIASATNALRSM 70
+YV+ + T +K L +FSQ+G+I+ +V T RG F+ F + A A++ +
Sbjct: 135 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 194
Query: 71 QGF--PFYDKPMRIQYS-----KTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSK 123
G P +P+ ++++ KT+ ++S++ + P R+ P P+
Sbjct: 195 NGQKPPGATEPITVKFANNPSQKTNQAILSQL----YQSPN--RRYPGPLA--------- 239
Query: 124 KKAAKEQARLMQAQQQQMQALSVQQ-PPVSQPAPPAPMATAGVPEQP-PNQILFLTNLPE 181
+QA+ + A V++ P++ + +A +P P +F+ NL
Sbjct: 240 -----QQAQRFRLDNLLNMAYGVKRFSPMTIDGMTS-LAGINIPGHPGTGWCIFVYNLAP 293
Query: 182 ETSEMMLSMLFNQFPGFKEVRLVPNRH-----DIAFVEFENEMQSAAAKLALHGFKITPT 236
+ E +L +F F V+++ + + FV N ++A A +L+G+++
Sbjct: 294 DADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGD- 352
Query: 237 HAMKISF 243
+++SF
Sbjct: 353 RVLQVSF 359
>gi|359478163|ref|XP_003632078.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 40-like [Vitis
vinifera]
Length = 463
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
Query: 14 VYVTHISSTDLKKSLYAIF-SQFGQI------MDIVALKTLKMRGQAFVIFKEIASATNA 66
+Y+ +++ + Y IF S FG + + + ++ +MRGQAFV F + A +A
Sbjct: 376 LYIKNLAKDVVVDDFYFIFGSLFGSVDAAKSGLSVKLMQEGRMRGQAFVTFPSVELAHHA 435
Query: 67 LRSMQGFPFYDKPMRIQYSKT 87
L + G+ F KPM IQ+ +
Sbjct: 436 LNVVNGYVFKGKPMIIQFGRN 456
>gi|348515473|ref|XP_003445264.1| PREDICTED: heterogeneous nuclear ribonucleoprotein G-like 1-like
[Oreochromis niloticus]
Length = 391
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 5 LAHICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALK---TLKMRGQAFVIFKEIA 61
+A +++ +++ +K+L FS++G+I++++ +K T K RG AFV F+ A
Sbjct: 1 MAEADRPGKLFIGGLNTETTEKALEQYFSKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 60
Query: 62 SATNALRSMQGFPFYDKPMRIQ 83
A +A R M G KP++++
Sbjct: 61 DAKDAAREMNGKSLDGKPIKVE 82
>gi|432103090|gb|ELK30412.1| ELAV-like protein 2 [Myotis davidii]
Length = 416
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 53/247 (21%), Positives = 111/247 (44%), Gaps = 39/247 (15%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMD---IVALKTLKMRGQAFVIFKEIASATNALRSM 70
+YV+ + T +K L +FSQ+G+I+ +V T RG F+ F + A A++ +
Sbjct: 184 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 243
Query: 71 QGF--PFYDKPMRIQYS-----KTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSK 123
G P +P+ ++++ KT+ ++S++ + P R+ P P+
Sbjct: 244 NGQKPPGATEPITVKFANNPSQKTNQAILSQL----YQSPN--RRYPGPLA--------- 288
Query: 124 KKAAKEQARLMQAQQQQMQALSVQQ-PPVSQPAPPAPMATAGVPEQP-PNQILFLTNLPE 181
+QA+ + A V++ P++ + +A +P P +F+ NL
Sbjct: 289 -----QQAQRFRLDNLLNMAYGVKRFSPMTIDGMTS-LAGINIPGHPGTGWCIFVYNLAP 342
Query: 182 ETSEMMLSMLFNQFPGFKEVRLVPNRH-----DIAFVEFENEMQSAAAKLALHGFKITPT 236
+ E +L +F F V+++ + + FV N ++A A +L+G+++
Sbjct: 343 DADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLG-D 401
Query: 237 HAMKISF 243
+++SF
Sbjct: 402 RVLQVSF 408
>gi|340718312|ref|XP_003397613.1| PREDICTED: pre-mRNA branch site p14-like protein-like [Bombus
terrestris]
gi|350409879|ref|XP_003488874.1| PREDICTED: pre-mRNA branch site p14-like protein-like [Bombus
impatiens]
gi|380012472|ref|XP_003690305.1| PREDICTED: pre-mRNA branch site p14-like protein-like [Apis
florea]
gi|383849069|ref|XP_003700169.1| PREDICTED: pre-mRNA branch site p14-like protein-like [Megachile
rotundata]
Length = 125
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 42/79 (53%)
Query: 10 VTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
V +Y+ ++ + +Y IF ++G I I T + RG AFV++++I A NA
Sbjct: 18 VNRVLYIRNLPYKITAEEMYDIFGKYGAIRQIRVGNTAETRGTAFVVYEDIFDAKNACDH 77
Query: 70 MQGFPFYDKPMRIQYSKTD 88
+ GF ++ + + Y +++
Sbjct: 78 LSGFNVCNRYLVVLYYQSN 96
>gi|405953685|gb|EKC21299.1| Regulator of differentiation 1 [Crassostrea gigas]
Length = 764
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 42/77 (54%)
Query: 169 PPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLAL 228
PP+ +L L+N+P E LS F Q K + P +A ++ + ++ A +A+
Sbjct: 685 PPSAVLHLSNIPPNIEEDFLSDAFAQHGQVKAFKFFPKDRKMALIQMASVDEAVTALIAM 744
Query: 229 HGFKITPTHAMKISFAK 245
H + ++ T+ +++SF+K
Sbjct: 745 HNYPLSDTNHLRVSFSK 761
>gi|397521307|ref|XP_003830738.1| PREDICTED: ELAV-like protein 2 isoform 1 [Pan paniscus]
Length = 359
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 53/247 (21%), Positives = 111/247 (44%), Gaps = 39/247 (15%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMD---IVALKTLKMRGQAFVIFKEIASATNALRSM 70
+YV+ + T +K L +FSQ+G+I+ +V T RG F+ F + A A++ +
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query: 71 QGF--PFYDKPMRIQYS-----KTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSK 123
G P +P+ ++++ KT+ ++S++ + P R+ P P+
Sbjct: 187 NGQKPPGATEPITVKFANNPSQKTNQAILSQL----YQSPN--RRYPGPL---------- 230
Query: 124 KKAAKEQARLMQAQQQQMQALSVQQ-PPVSQPAPPAPMATAGVPEQP-PNQILFLTNLPE 181
+QA+ + A V++ P++ + +A +P P +F+ NL
Sbjct: 231 ----AQQAQRFRLDNLLNMAYGVKRFSPMTIDGMTS-LAGINIPGHPGTGWCIFVYNLAP 285
Query: 182 ETSEMMLSMLFNQFPGFKEVRLVPNRH-----DIAFVEFENEMQSAAAKLALHGFKITPT 236
+ E +L +F F V+++ + + FV N ++A A +L+G+++
Sbjct: 286 DADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGD- 344
Query: 237 HAMKISF 243
+++SF
Sbjct: 345 RVLQVSF 351
>gi|81914424|sp|Q8CH84.1|ELAV2_RAT RecName: Full=ELAV-like protein 2; AltName: Full=Hu-antigen B;
Short=HuB
gi|27374986|dbj|BAC53775.1| RNA binding protein HuB [Rattus norvegicus]
Length = 359
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 53/247 (21%), Positives = 111/247 (44%), Gaps = 39/247 (15%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMD---IVALKTLKMRGQAFVIFKEIASATNALRSM 70
+YV+ + T +K L +FSQ+G+I+ +V T RG F+ F + A A++ +
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query: 71 QGF--PFYDKPMRIQYS-----KTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSK 123
G P +P+ ++++ KT+ ++S++ + P R+ P P+
Sbjct: 187 NGQKPPGATEPITVKFANNPSQKTNQAILSQL----YQSPN--RRYPGPL---------- 230
Query: 124 KKAAKEQARLMQAQQQQMQALSVQQ-PPVSQPAPPAPMATAGVPEQP-PNQILFLTNLPE 181
+QA+ + A V++ P++ + +A +P P +F+ NL
Sbjct: 231 ----AQQAQRFRLDNLLNMAYGVKRFSPMTIDGMTS-LAGINIPGHPGTGWCIFVYNLAP 285
Query: 182 ETSEMMLSMLFNQFPGFKEVRLVPNRH-----DIAFVEFENEMQSAAAKLALHGFKITPT 236
+ E +L +F F V+++ + + FV N ++A A +L+G+++
Sbjct: 286 DADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGD- 344
Query: 237 HAMKISF 243
+++SF
Sbjct: 345 RVLQVSF 351
>gi|389610245|dbj|BAM18734.1| splicing factor SC35 [Papilio xuthus]
Length = 126
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 42/79 (53%)
Query: 10 VTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
V +YV ++ + +Y IF ++G I I T + RG AFV++++I A NA
Sbjct: 17 VNRILYVRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDH 76
Query: 70 MQGFPFYDKPMRIQYSKTD 88
+ GF ++ + + Y +++
Sbjct: 77 LSGFNVCNRYLVVLYYRSN 95
>gi|295424162|ref|NP_001171354.1| ELAV-like protein 2 isoform 4 [Mus musculus]
gi|74206254|dbj|BAE24886.1| unnamed protein product [Mus musculus]
gi|149044490|gb|EDL97749.1| rCG53485, isoform CRA_a [Rattus norvegicus]
Length = 359
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 53/247 (21%), Positives = 111/247 (44%), Gaps = 39/247 (15%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMD---IVALKTLKMRGQAFVIFKEIASATNALRSM 70
+YV+ + T +K L +FSQ+G+I+ +V T RG F+ F + A A++ +
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query: 71 QGF--PFYDKPMRIQYS-----KTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSK 123
G P +P+ ++++ KT+ ++S++ + P R+ P P+
Sbjct: 187 NGQKPPGATEPITVKFANNPSQKTNQAILSQL----YQSPN--RRYPGPL---------- 230
Query: 124 KKAAKEQARLMQAQQQQMQALSVQQ-PPVSQPAPPAPMATAGVPEQP-PNQILFLTNLPE 181
+QA+ + A V++ P++ + +A +P P +F+ NL
Sbjct: 231 ----AQQAQRFRLDNLLNMAYGVKRFSPMTIDGMTS-LAGINIPGHPGTGWCIFVYNLAP 285
Query: 182 ETSEMMLSMLFNQFPGFKEVRLVPNRH-----DIAFVEFENEMQSAAAKLALHGFKITPT 236
+ E +L +F F V+++ + + FV N ++A A +L+G+++
Sbjct: 286 DADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGD- 344
Query: 237 HAMKISF 243
+++SF
Sbjct: 345 RVLQVSF 351
>gi|295442846|ref|NP_595835.2| Pre-mRNA branch site p14-like protein [Schizosaccharomyces pombe
972h-]
gi|254745590|emb|CAA18384.2| U2 snRNP-associated protein SF3B14 ortholog (predicted)
[Schizosaccharomyces pombe]
Length = 114
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 41/75 (54%)
Query: 10 VTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
V + +++ ++S + +Y +F ++G + I T++ RG AFV+++ + A A
Sbjct: 10 VNSILFIKNLSFKITAEEMYDLFGRYGPVRQIRLGNTVQTRGTAFVVYENVQDARRACEK 69
Query: 70 MQGFPFYDKPMRIQY 84
+ G+ F D+ + + Y
Sbjct: 70 LSGYNFMDRYLVVHY 84
>gi|449445890|ref|XP_004140705.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
Length = 654
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 10 VTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMR---GQAFVIFKEIASATNA 66
VT +YV + LY IF+Q GQ++ + + L R G +V + A A
Sbjct: 27 VTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARA 86
Query: 67 LRSMQGFPFYDKPMRIQYSKTD 88
L + P KP+R+ YS D
Sbjct: 87 LDVLNFTPLNGKPIRVMYSHRD 108
Score = 36.6 bits (83), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 12 NFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL--KMRGQAFVIFKEIASATNALRS 69
N V+V ++S T ++ L FS+FG + IV ++ K R FV F+ A A+ +
Sbjct: 208 NNVFVKNLSETTTEEDLNKAFSEFGTLTSIVVMRDADGKSRCFGFVNFENADDAARAVDT 267
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTF 99
+ G DK + ++ S+ ++K F
Sbjct: 268 LNGKLVDDKEWYVGKAQKKSEREVELKHRF 297
>gi|357120111|ref|XP_003561773.1| PREDICTED: polyadenylate-binding protein-like [Brachypodium
distachyon]
Length = 714
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLK--MRGQAFVIFKEIASATNALRSMQ 71
VY+ +IS ++L F +FG I + ++ K +G FV + A A+ SM+
Sbjct: 385 VYIKNISDRVDDETLRERFDEFGNITSVKIMRDDKGISKGFGFVCYNTPDEAKCAVSSMR 444
Query: 72 GFPFYDKPMRIQYSKTDSDVISKIKGTFME 101
G FYDKP+ + ++ D ++++ F E
Sbjct: 445 GVMFYDKPLYVAIAQRKEDRKARLEQRFAE 474
>gi|354491611|ref|XP_003507948.1| PREDICTED: ELAV-like protein 2 isoform 1 [Cricetulus griseus]
Length = 359
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 53/247 (21%), Positives = 111/247 (44%), Gaps = 39/247 (15%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMD---IVALKTLKMRGQAFVIFKEIASATNALRSM 70
+YV+ + T +K L +FSQ+G+I+ +V T RG F+ F + A A++ +
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query: 71 QGF--PFYDKPMRIQYS-----KTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSK 123
G P +P+ ++++ KT+ ++S++ + P R+ P P+
Sbjct: 187 NGQKPPGATEPITVKFANNPSQKTNQAILSQL----YQSPN--RRYPGPLA--------- 231
Query: 124 KKAAKEQARLMQAQQQQMQALSVQQ-PPVSQPAPPAPMATAGVPEQP-PNQILFLTNLPE 181
+QA+ + A V++ P++ + +A +P P +F+ NL
Sbjct: 232 -----QQAQRFRLDNLLNMAYGVKRFSPMTIDGMTS-LAGINIPGHPGTGWCIFVYNLAP 285
Query: 182 ETSEMMLSMLFNQFPGFKEVRLVPNRH-----DIAFVEFENEMQSAAAKLALHGFKITPT 236
+ E +L +F F V+++ + + FV N ++A A +L+G+++
Sbjct: 286 DADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGD- 344
Query: 237 HAMKISF 243
+++SF
Sbjct: 345 RVLQVSF 351
>gi|259016306|sp|O59670.2|PM14_SCHPO RecName: Full=Pre-mRNA branch site p14-like protein
Length = 115
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 41/75 (54%)
Query: 10 VTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
V + +++ ++S + +Y +F ++G + I T++ RG AFV+++ + A A
Sbjct: 10 VNSILFIKNLSFKITAEEMYDLFGRYGPVRQIRLGNTVQTRGTAFVVYENVQDARRACEK 69
Query: 70 MQGFPFYDKPMRIQY 84
+ G+ F D+ + + Y
Sbjct: 70 LSGYNFMDRYLVVHY 84
>gi|388505956|gb|AFK41044.1| unknown [Lotus japonicus]
Length = 232
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 12/84 (14%)
Query: 162 TAGVPEQ--PPN--QILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHD-------- 209
++G P+ PP+ LF+ LP ++ +F F G+KEVRLV
Sbjct: 117 SSGRPDHSLPPDATSTLFVEGLPTNCPRREVAHIFRPFVGYKEVRLVSKESRQPGGDPLV 176
Query: 210 IAFVEFENEMQSAAAKLALHGFKI 233
+ FV+FE+ +A AK AL G+K
Sbjct: 177 LCFVDFESPAHAATAKDALQGYKF 200
>gi|297849226|ref|XP_002892494.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
gi|297338336|gb|EFH68753.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 438
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 7/81 (8%)
Query: 14 VYVTHISSTDLKKSLYAIF-SQFGQI------MDIVALKTLKMRGQAFVIFKEIASATNA 66
+Y+ +++ + Y IF SQF I + + ++ +MRGQAF+ F + A A
Sbjct: 350 LYIKNLAKDVVIDDFYYIFGSQFESIEAAKTSLGVRLMQEGRMRGQAFLTFPSVEVAHRA 409
Query: 67 LRSMQGFPFYDKPMRIQYSKT 87
L + GF F KPM IQ+ +
Sbjct: 410 LNLVNGFVFKGKPMIIQFGRN 430
>gi|297279397|ref|XP_001108341.2| PREDICTED: RNA-binding protein 40-like [Macaca mulatta]
Length = 511
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 6 AHICVTNFVYVTHISSTDLKK--SLYAIFSQFGQ--IMDIVALKTLKMRGQAFVIFKEIA 61
I V N H+ DLK Y FS Q + DI +K +M+GQAF+
Sbjct: 413 CRIYVKNLA--KHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEK 470
Query: 62 SATNALRSMQGFPFYDKPMRIQYSKT 87
+AT AL+ G+ + KPM +Q++++
Sbjct: 471 AATKALKEANGYVLFGKPMVVQFARS 496
>gi|355558218|gb|EHH14998.1| hypothetical protein EGK_01023, partial [Macaca mulatta]
Length = 461
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 6 AHICVTNFVYVTHISSTDLKK--SLYAIFSQFGQ--IMDIVALKTLKMRGQAFVIFKEIA 61
I V N H+ DLK Y FS Q + DI +K +M+GQAF+
Sbjct: 364 CRIYVKNLA--KHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEK 421
Query: 62 SATNALRSMQGFPFYDKPMRIQYSKT 87
+AT AL+ G+ + KPM +Q++++
Sbjct: 422 AATKALKEANGYVLFGKPMVVQFARS 447
>gi|326918852|ref|XP_003205700.1| PREDICTED: RNA-binding protein 41-like [Meleagris gallopavo]
Length = 305
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDI---VALKTLKMRGQAFVIFKEIASATNALRSM 70
+YV ++ K L ++F++F Q L + +MRGQAF+ F +I SA +A+ +
Sbjct: 207 LYVKNLGPRVTMKDLVSLFARFQQEDSRPIQFRLLSGRMRGQAFITFPDIQSAQDAMLLV 266
Query: 71 QGFPFYDKPMRIQYSKT 87
G+ KPM I++ K+
Sbjct: 267 NGYRLQGKPMVIEFGKS 283
>gi|367012239|ref|XP_003680620.1| hypothetical protein TDEL_0C05200 [Torulaspora delbrueckii]
gi|359748279|emb|CCE91409.1| hypothetical protein TDEL_0C05200 [Torulaspora delbrueckii]
Length = 263
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Query: 157 PAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFE 216
P + + PPN++L + NLP T++ ++ LF+ E+RLV RH +AFVE+
Sbjct: 177 PRKIKDVVISGNPPNKVLLVQNLPHATTQETITELFHS-SSLVEIRLVDVRH-LAFVEYS 234
Query: 217 NEMQSAAAKLALHGFKITPTHAMKISFAK 245
+ + A + L H + I FAK
Sbjct: 235 SIEDATAMRNKLGPTYSWNGHLINIEFAK 263
>gi|302762759|ref|XP_002964801.1| hypothetical protein SELMODRAFT_406315 [Selaginella
moellendorffii]
gi|300167034|gb|EFJ33639.1| hypothetical protein SELMODRAFT_406315 [Selaginella
moellendorffii]
Length = 127
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVAL---KTLKMRGQAFVIFKEIASATNALRSM 70
+YV ++ SL F +FG ++D + T + +G FV FK A AL SM
Sbjct: 22 LYVNGLAWGVDDLSLRGAFEEFGDVIDTKVMTNPDTGRSKGFGFVTFKREDEAKEALESM 81
Query: 71 QGFPFYDKPMRIQYSKT 87
G F + +R+ Y+KT
Sbjct: 82 DGKDFAGRSIRVDYAKT 98
>gi|294463261|gb|ADE77166.1| unknown [Picea sitchensis]
Length = 376
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 12/95 (12%)
Query: 162 TAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLV---PNRHD-----IAFV 213
T G + +LF+ LP + + + +F F GFKEVR+V P R + FV
Sbjct: 257 TGGGADSAREPVLFIDGLPLDCTVREAAHIFRPFIGFKEVRVVHKEPKRPGGEKSVLCFV 316
Query: 214 EFENEMQSAAAKLALHGFKITP----THAMKISFA 244
EF + +A A+ AL G+K+ + ++ISF+
Sbjct: 317 EFTDLRHAAIAREALQGYKVDEHDPNSGTLRISFS 351
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.130 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,414,968,742
Number of Sequences: 23463169
Number of extensions: 130260370
Number of successful extensions: 1205548
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1487
Number of HSP's successfully gapped in prelim test: 4781
Number of HSP's that attempted gapping in prelim test: 1184171
Number of HSP's gapped (non-prelim): 20209
length of query: 246
length of database: 8,064,228,071
effective HSP length: 139
effective length of query: 107
effective length of database: 9,097,814,876
effective search space: 973466191732
effective search space used: 973466191732
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 75 (33.5 bits)