BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4057
(246 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P45429|SNRPA_XENLA U1 small nuclear ribonucleoprotein A OS=Xenopus laevis GN=snrpa
PE=2 SV=1
Length = 282
Score = 270 bits (690), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 152/274 (55%), Positives = 184/274 (67%), Gaps = 38/274 (13%)
Query: 11 TNFVYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNA 66
N +Y+ + I +LKKSLYAIFSQFGQI+DI+ + LKMRGQAFVIFKE +SATNA
Sbjct: 9 NNTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRNLKMRGQAFVIFKETSSATNA 68
Query: 67 LRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVR-KQPAPVEDPAEAKKSKKK 125
LRSMQGFPFYDKPMRIQYSKTDSD+I+K+KGTF+ER +K + K+ V + K +
Sbjct: 69 LRSMQGFPFYDKPMRIQYSKTDSDIIAKMKGTFVERDRKRQEKRKVKVPEVQGVKNAMPG 128
Query: 126 AA-----KEQARLMQ-----AQQQQMQALSVQQPPVSQPA--PPAPMATAGVP------- 166
AA Q MQ Q +M ++ Q P + P PP MA +P
Sbjct: 129 AALLPGVPGQMAAMQDMPGMTQAPRMMHMAGQAPYMHHPGMMPPPGMAPGQMPPGGMPHG 188
Query: 167 --------------EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAF 212
E PPN ILFLTNLPEET+E+MLSMLFNQFPGFKEVRLVP RHDIAF
Sbjct: 189 QLMPGQMAPMQPISENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAF 248
Query: 213 VEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
VEF+NE+Q+ AA+ +L GFKIT +++MKISFAKK
Sbjct: 249 VEFDNEVQAGAARESLQGFKITQSNSMKISFAKK 282
>sp|Q2KIR1|SNRPA_BOVIN U1 small nuclear ribonucleoprotein A OS=Bos taurus GN=SNRPA PE=2
SV=1
Length = 282
Score = 269 bits (688), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 152/276 (55%), Positives = 183/276 (66%), Gaps = 48/276 (17%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LKKSLYAIFSQFGQI+DI+ ++LKMRGQAFVIFKE++SATNALRS
Sbjct: 12 IYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRS 71
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQ-PAPVEDPAEAKKSKKKAAK 128
MQGFPFYDKPMRIQY+KTDSD+I+K+KGTF+ER +K K+ P E PA K + AA
Sbjct: 72 MQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPAAKKAVQGGAAA 131
Query: 129 EQARLMQAQQQQMQALS-----------------------------VQQPPVSQPA---- 155
+Q M ++ Q PP + P
Sbjct: 132 PVVGTVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQLPPGAMPPQQLM 191
Query: 156 ----PPA-PMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDI 210
PPA P++ E PPN ILFLTNLPEET+E+MLSMLFNQFPGFKEVRLVP RHDI
Sbjct: 192 PGQMPPAQPLS-----ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDI 246
Query: 211 AFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
AFVEF+NE+Q+ AA+ AL GFKIT +AMKISFAKK
Sbjct: 247 AFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282
>sp|Q06AA4|SNRPA_PIG U1 small nuclear ribonucleoprotein A OS=Sus scrofa GN=SNRPA PE=2
SV=1
Length = 282
Score = 269 bits (687), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 152/276 (55%), Positives = 183/276 (66%), Gaps = 48/276 (17%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LKKSLYAIFSQFGQI+DI+ ++LKMRGQAFVIFKE++SATNALRS
Sbjct: 12 IYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRS 71
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQ-PAPVEDPAEAKKSKKKAAK 128
MQGFPFYDKPMRIQY+KTDSD+I+K+KGTF+ER +K K+ P E PA K + AA
Sbjct: 72 MQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPASKKAVQGGAAA 131
Query: 129 EQARLMQAQQQQMQALS-----------------------------VQQPPVSQPA---- 155
+Q M ++ Q PP + P
Sbjct: 132 PVVGAVQGPVPGMPPMTQTPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLM 191
Query: 156 ----PPA-PMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDI 210
PPA P++ E PPN ILFLTNLPEET+E+MLSMLFNQFPGFKEVRLVP RHDI
Sbjct: 192 PGQMPPAQPLS-----ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDI 246
Query: 211 AFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
AFVEF+NE+Q+ AA+ AL GFKIT +AMKISFAKK
Sbjct: 247 AFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282
>sp|P09012|SNRPA_HUMAN U1 small nuclear ribonucleoprotein A OS=Homo sapiens GN=SNRPA PE=1
SV=3
Length = 282
Score = 268 bits (684), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 151/276 (54%), Positives = 182/276 (65%), Gaps = 48/276 (17%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LKKSLYAIFSQFGQI+DI+ ++LKMRGQAFVIFKE++SATNALRS
Sbjct: 12 IYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRS 71
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQ-PAPVEDPAEAKKSKKKAAK 128
MQGFPFYDKPMRIQY+KTDSD+I+K+KGTF+ER +K K+ P E PA K + A
Sbjct: 72 MQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGAT 131
Query: 129 EQARLMQAQQQQMQALS-----------------------------VQQPPVSQPA---- 155
+Q M ++ Q PP + P
Sbjct: 132 PVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLM 191
Query: 156 ----PPA-PMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDI 210
PPA P++ E PPN ILFLTNLPEET+E+MLSMLFNQFPGFKEVRLVP RHDI
Sbjct: 192 PGQMPPAQPLS-----ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDI 246
Query: 211 AFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
AFVEF+NE+Q+ AA+ AL GFKIT +AMKISFAKK
Sbjct: 247 AFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282
>sp|Q62189|SNRPA_MOUSE U1 small nuclear ribonucleoprotein A OS=Mus musculus GN=Snrpa PE=2
SV=3
Length = 287
Score = 265 bits (677), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 151/275 (54%), Positives = 182/275 (66%), Gaps = 47/275 (17%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LKKSLYAIFSQFGQI+DI+ + +KMRGQAFVIFKE+ SATNALRS
Sbjct: 18 IYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRIMKMRGQAFVIFKEVTSATNALRS 77
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQ-PAPVEDPAEAKKSKKKAAK 128
MQGFPFYDKPMRIQY+KTDSD+I+K+KGT++ER +K K+ P E PA K + AA
Sbjct: 78 MQGFPFYDKPMRIQYAKTDSDIIAKMKGTYVERDRKREKRKPKSQETPAAKKAVQGGAAA 137
Query: 129 ----------------EQARLMQAQQQQMQALSV------------QQPPVSQPA----- 155
+ R+M Q + Q PP + P
Sbjct: 138 PVVGAVQPVPGMPPMPQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMP 197
Query: 156 ---PPA-PMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIA 211
PPA P++ E PPN ILFLTNLPEET+E+MLSMLFNQFPGFKEVRLVP RHDIA
Sbjct: 198 GQMPPAQPLS-----ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIA 252
Query: 212 FVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
FVEF+NE+Q+ AA+ AL GFKIT +AMKISFAKK
Sbjct: 253 FVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 287
>sp|Q9CQI7|RU2B_MOUSE U2 small nuclear ribonucleoprotein B'' OS=Mus musculus GN=Snrpb2
PE=2 SV=1
Length = 225
Score = 265 bits (677), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 142/237 (59%), Positives = 172/237 (72%), Gaps = 24/237 (10%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LK+SLYA+FSQFG ++DIVALKT+KMRGQAFVIFKE+ S+TNALR
Sbjct: 9 IYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQ 68
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
+QGFPFY KPMRIQY+KTDSD+ISK++GTF ++ KK K+ A + A A +KK
Sbjct: 69 LQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTMEQAAAAANKKPG--- 125
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLS 189
Q A + Q A P P VP+ PPN ILFL NLPEET+EMMLS
Sbjct: 126 --------QGTPNAANTQ-----GTAAPNPQ----VPDYPPNYILFLNNLPEETNEMMLS 168
Query: 190 MLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
MLFNQFPGFKEVRLVP RHDIAFVEFEN+ Q+ AA+ AL GFKITP+HAMKI++AKK
Sbjct: 169 MLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>sp|P43332|SNRPA_DROME U1 small nuclear ribonucleoprotein A OS=Drosophila melanogaster
GN=snf PE=1 SV=1
Length = 216
Score = 264 bits (674), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 147/220 (66%), Positives = 164/220 (74%), Gaps = 29/220 (13%)
Query: 27 SLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSK 86
SLYAIFSQFGQI+DIVALKTLKMRGQAFVIFKEI SA+NALR+MQGFPFYDKPM+I YSK
Sbjct: 26 SLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIGSASNALRTMQGFPFYDKPMQIAYSK 85
Query: 87 TDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSV 146
+DSD+++KIKGTF ERPKKV+ + K KK ++ E +
Sbjct: 86 SDSDIVAKIKGTFKERPKKVKPPKPAPGTDEKKDKKKKPSSAENSN-------------- 131
Query: 147 QQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPN 206
P +Q EQPPNQILFLTNLPEET+EMMLSMLFNQFPGFKEVRLVPN
Sbjct: 132 ---PNAQ------------TEQPPNQILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPN 176
Query: 207 RHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
RHDIAFVEF E+QS AAK AL GFKITPTHAMKI+FAKK
Sbjct: 177 RHDIAFVEFTTELQSNAAKEALQGFKITPTHAMKITFAKK 216
>sp|P08579|RU2B_HUMAN U2 small nuclear ribonucleoprotein B'' OS=Homo sapiens GN=SNRPB2
PE=1 SV=1
Length = 225
Score = 262 bits (669), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 139/237 (58%), Positives = 168/237 (70%), Gaps = 24/237 (10%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ + I +LK+SLYA+FSQFG ++DIVALKT+KMRGQAFVIFKE+ S+TNALR
Sbjct: 9 IYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQ 68
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
+QGFPFY KPMRIQY+KTDSD+ISK++GTF ++ KK K+ A + +KK
Sbjct: 69 LQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTATTTNKKPG--- 125
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLS 189
Q S S P P VP+ PPN ILFL NLPEET+EMMLS
Sbjct: 126 ----------QGTPNSANTQGNSTPNPQ-------VPDYPPNYILFLNNLPEETNEMMLS 168
Query: 190 MLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
MLFNQFPGFKEVRLVP RHDIAFVEFEN+ Q+ AA+ AL GFKITP+HAMKI++AKK
Sbjct: 169 MLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>sp|Q8H1S6|RU2B2_ARATH U2 small nuclear ribonucleoprotein B'' 2 OS=Arabidopsis thaliana
GN=At1g06960 PE=1 SV=1
Length = 229
Score = 206 bits (525), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 113/248 (45%), Positives = 160/248 (64%), Gaps = 23/248 (9%)
Query: 3 IILAHICVTNFVYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFK 58
++ A I +Y+ HI+ +LK+SLY +FSQFG+++D+VALKT K+RGQA+V+F
Sbjct: 1 MLTADIPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFT 60
Query: 59 EIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAE 118
E+ +A+NA+R MQ FPFYDKPMRIQY+K+ SD ++K +G+F+ P + E
Sbjct: 61 EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFV---------PKEKKMKQE 111
Query: 119 AKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTN 178
K +K+ A+E QQ M + Q P P P +G PPN ILF+ N
Sbjct: 112 EKVERKRHAEE------TQQPSMPNGATTQ--NGMPVP--PFQPSGQDTMPPNNILFIHN 161
Query: 179 LPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHA 238
LP ET+ MML +LF Q+PGFKE+R++ + IAFVE+E+++QS+ A AL GFKITP +
Sbjct: 162 LPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPQNP 221
Query: 239 MKISFAKK 246
M +SFAKK
Sbjct: 222 MVVSFAKK 229
>sp|O22922|RU2B1_ARATH U2 small nuclear ribonucleoprotein B'' OS=Arabidopsis thaliana
GN=U2B'' PE=1 SV=1
Length = 232
Score = 205 bits (522), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 110/248 (44%), Positives = 152/248 (61%), Gaps = 20/248 (8%)
Query: 3 IILAHICVTNFVYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFK 58
++ A I +Y+ + I +LK+SLY +FSQFG+I+D+VALKT K+RGQA+V F
Sbjct: 1 MLTADIPPNQSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFS 60
Query: 59 EIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAE 118
E+ +A +A+R MQ FPFYDKPMR+QY+K SD ++K +GTF+ + KK RKQ VE E
Sbjct: 61 EVTAAGHAVRQMQNFPFYDKPMRLQYAKAKSDCLAKAEGTFVPKDKK-RKQEEKVERKRE 119
Query: 119 AKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTN 178
+ A S P + P +G PPN ILF+ N
Sbjct: 120 DSQRPNTA---------------NGPSANGPSANNGVPAPSFQPSGQETMPPNNILFIQN 164
Query: 179 LPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHA 238
LP ET+ MML +LF Q+PGFKE+R++ + IAFVE+E+++Q++ A L GFKITP +
Sbjct: 165 LPHETTSMMLQLLFEQYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQGFKITPQNP 224
Query: 239 MKISFAKK 246
M ISFAKK
Sbjct: 225 MVISFAKK 232
>sp|Q0DKM4|RU1A_ORYSJ U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp.
japonica GN=Os05g0154800 PE=3 SV=1
Length = 253
Score = 201 bits (512), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 115/244 (47%), Positives = 156/244 (63%), Gaps = 26/244 (10%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ +++ +LKKSL A+FSQFG+I+D++A KTLK +GQA+V+F+++ASAT AL+S
Sbjct: 25 IYINNLNEKIKLEELKKSLRAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALKS 84
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
MQ FPF++KPMRIQY+KT SD+I+K GTF+ R ++ K++ +K K+
Sbjct: 85 MQDFPFHNKPMRIQYAKTKSDIIAKADGTFVPRERR--------------KRNDEKPEKK 130
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPP---APMATAGVPEQP----PNQILFLTNLPEE 182
Q R Q+ L V P APP P A A P PN ILF+ NLP E
Sbjct: 131 QKREQHHDVSQV-GLGVNAYPGVYGAPPLSQLPFAGAQKVMMPEIIVPNNILFVQNLPHE 189
Query: 183 TSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKIS 242
T+ MML MLF Q+PGFKEVR+V + IAFVE+ +E Q+ AA L GFKIT + M IS
Sbjct: 190 TTPMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEGQATAAMNHLQGFKITKDNQMLIS 249
Query: 243 FAKK 246
+AKK
Sbjct: 250 YAKK 253
>sp|A2Y0J7|RU1A_ORYSI U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. indica
GN=OsI_18512 PE=3 SV=1
Length = 253
Score = 201 bits (512), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 115/244 (47%), Positives = 156/244 (63%), Gaps = 26/244 (10%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ +++ +LKKSL A+FSQFG+I+D++A KTLK +GQA+V+F+++ASAT AL+S
Sbjct: 25 IYINNLNEKIKLEELKKSLRAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALKS 84
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
MQ FPF++KPMRIQY+KT SD+I+K GTF+ R ++ K++ +K K+
Sbjct: 85 MQDFPFHNKPMRIQYAKTKSDIIAKADGTFVPRERR--------------KRNDEKPEKK 130
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPP---APMATAGVPEQP----PNQILFLTNLPEE 182
Q R Q+ L V P APP P A A P PN ILF+ NLP E
Sbjct: 131 QKREQHHDVSQV-GLGVNAYPGVYGAPPLSQLPFAGAQKVMMPEIIVPNNILFVQNLPHE 189
Query: 183 TSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKIS 242
T+ MML MLF Q+PGFKEVR+V + IAFVE+ +E Q+ AA L GFKIT + M IS
Sbjct: 190 TTPMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEGQATAAMNHLQGFKITKDNQMLIS 249
Query: 243 FAKK 246
+AKK
Sbjct: 250 YAKK 253
>sp|B8AM21|RU2B_ORYSI U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp.
indica GN=OsI_11177 PE=3 SV=1
Length = 232
Score = 185 bits (469), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 105/228 (46%), Positives = 146/228 (64%), Gaps = 16/228 (7%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
+ +LK+SLYA+ SQ+G+I+D+VALKT K+RGQA+V+F EI +ATNA R +Q F FY K
Sbjct: 21 VKKEELKRSLYALCSQYGRILDVVALKTPKLRGQAWVVFSEITAATNAFRGLQEFDFYGK 80
Query: 79 PMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQ 138
MR+QY+KT SD ++ G+ AP + KK ++KAA+++ R +AQQ
Sbjct: 81 RMRVQYAKTKSDCLATEDGS-----------TAPK---EKRKKQEEKAAEKKRRAEEAQQ 126
Query: 139 QQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGF 198
A + Q + T+ P PPN ILF+ NLP ET+ MML +LF Q+PGF
Sbjct: 127 SGPNAAAQSNGTGYQASRLG--KTSQEPPAPPNNILFIQNLPAETTSMMLQILFQQYPGF 184
Query: 199 KEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
+EVR++ + IAFVE+E++ QS A AL GFKITP + M IS+AKK
Sbjct: 185 REVRMIEAKPGIAFVEYEDDSQSMVAMQALQGFKITPYNPMAISYAKK 232
>sp|Q10MR0|RU2B_ORYSJ U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp.
japonica GN=Os03g0298800 PE=2 SV=1
Length = 232
Score = 185 bits (469), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 105/228 (46%), Positives = 146/228 (64%), Gaps = 16/228 (7%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
+ +LK+SLYA+ SQ+G+I+D+VALKT K+RGQA+V+F EI +ATNA R +Q F FY K
Sbjct: 21 VKKEELKRSLYALCSQYGRILDVVALKTPKLRGQAWVVFSEITAATNAFRGLQEFDFYGK 80
Query: 79 PMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQ 138
MR+QY+KT SD ++ G+ AP + KK ++KAA+++ R +AQQ
Sbjct: 81 RMRVQYAKTRSDCLATEDGS-----------TAPK---EKRKKQEEKAAEKKRRAEEAQQ 126
Query: 139 QQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGF 198
A + Q + T+ P PPN ILF+ NLP ET+ MML +LF Q+PGF
Sbjct: 127 SGPNAAAQSNGTGYQASRLG--KTSQEPPAPPNNILFIQNLPAETTSMMLQILFQQYPGF 184
Query: 199 KEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
+EVR++ + IAFVE+E++ QS A AL GFKITP + M IS+AKK
Sbjct: 185 REVRMIEAKPGIAFVEYEDDSQSMVAMQALQGFKITPYNPMAISYAKK 232
>sp|Q39244|RU1A_ARATH U1 small nuclear ribonucleoprotein A OS=Arabidopsis thaliana GN=U1A
PE=1 SV=1
Length = 250
Score = 178 bits (451), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 105/239 (43%), Positives = 144/239 (60%), Gaps = 14/239 (5%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ +++ +LKKSL A+FSQFG+I++I+A KT K +GQA+V+F SA+ A+
Sbjct: 20 IYINNLNEKVKLDELKKSLNAVFSQFGKILEILAFKTFKHKGQAWVVFDNTESASTAIAK 79
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
M FPFYDK MRIQY+KT SDV++K GTF+ R K+ R + K KK +
Sbjct: 80 MNNFPFYDKEMRIQYAKTKSDVVAKADGTFVPREKRKR------HEEKGGGKKKKDQHHD 133
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPE--QPPNQILFLTNLPEETSEMM 187
++ + PP+SQ P M +PE PPN ILF+ NLP ET+ M+
Sbjct: 134 STQMGMPMNSAYPGVYGAAPPLSQVPYPGGM-KPNMPEAPAPPNNILFVQNLPHETTPMV 192
Query: 188 LSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
L MLF Q+ GFKEVR++ + IAFVEF +EMQS A L GFKI + M I++AKK
Sbjct: 193 LQMLFCQYQGFKEVRMIEAKPGIAFVEFADEMQSTVAMQGLQGFKIQ-QNQMLITYAKK 250
>sp|Q54J05|RU2B_DICDI U2 small nuclear ribonucleoprotein B'' OS=Dictyostelium discoideum
GN=snrpb2 PE=3 SV=1
Length = 241
Score = 176 bits (446), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 101/235 (42%), Positives = 147/235 (62%), Gaps = 13/235 (5%)
Query: 14 VYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+YV + IS L + L +FS++G I++IV K+LKMRGQAF++FK+I SA+NALR
Sbjct: 14 LYVNNLYEKISKKKLIEQLLLLFSKYGPILEIVGSKSLKMRGQAFIVFKDITSASNALRE 73
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
M GF F D+PM+IQY K+ SD +SK+ GT+ME+ K+ R++ + K S KK ++
Sbjct: 74 MNGFNFLDRPMKIQYCKSKSDAVSKLDGTYMEK-KREREE-------NDKKGSNKKQDRK 125
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLS 189
Q QQ++ A + S ++ + PPN+ LF+ NLP++ MMLS
Sbjct: 126 STGQQQQQQKRPGAPTSTTSTTSPTTSNGTVSLQ-PRDDPPNKTLFVENLPDKCDSMMLS 184
Query: 190 MLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFA 244
MLF+QF GFKEV +V ++ IAF+EFE+E++S A L FK+TP M +SFA
Sbjct: 185 MLFSQFQGFKEVHMVESKKGIAFIEFEDEIKSGFAMTNLQHFKVTPEKPMVVSFA 239
>sp|O74968|RU1A_SCHPO U1 small nuclear ribonucleoprotein usp102 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=usp102 PE=1 SV=1
Length = 249
Score = 149 bits (376), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 83/252 (32%), Positives = 138/252 (54%), Gaps = 51/252 (20%)
Query: 14 VYVTHISS----TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ +I T LK+ L +F +G+++D+ A KTL+MRGQAFV+F + +A+ AL+
Sbjct: 28 LYIRNIEEKIRLTMLKRILEHLFGSYGKVIDVQARKTLRMRGQAFVVFDNLENASRALKD 87
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKE 129
+QG+P Y KPM IQYSK+ SD+I + R+ P +E + +K++++ K
Sbjct: 88 LQGYPLYGKPMMIQYSKSKSDIIVQ------------RESPEEIETRKKDRKNRREMLKR 135
Query: 130 QARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQ---------------PPNQIL 174
+ L QPA P P VP++ PPN++L
Sbjct: 136 TSAL-------------------QPAAPKPTHKKPVPKRNVGAERKSTINEDLLPPNKVL 176
Query: 175 FLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKIT 234
L N+P+E + +L+ +F F GF+EVR+VP R IAFVE++++ ++ AK G ++
Sbjct: 177 LLQNIPQEVNADVLTQIFEAFSGFQEVRMVPGRRGIAFVEYDSDREATVAKNGTTGMSLS 236
Query: 235 PTHAMKISFAKK 246
+ +K++FA+K
Sbjct: 237 -GNQIKVTFARK 247
>sp|Q7LL14|RU2B_SCHPO Probable U2 small nuclear ribonucleoprotein B''
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=msl1 PE=1 SV=1
Length = 111
Score = 79.0 bits (193), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 62/88 (70%), Gaps = 4/88 (4%)
Query: 12 NFVYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNAL 67
N +YV + I+ DL+ +LY +FS +G ++DIVALKT KMRGQA V+F + ++A A+
Sbjct: 4 NTLYVNNLNDKINKNDLRTALYMLFSTYGTVVDIVALKTPKMRGQAHVVFFDPSAAAIAM 63
Query: 68 RSMQGFPFYDKPMRIQYSKTDSDVISKI 95
++++ F F+ K M+IQY+ + S +I +I
Sbjct: 64 KALKNFIFFGKEMKIQYAHSKSKIIERI 91
>sp|P40567|MSL1_YEAST U2 small nuclear ribonucleoprotein B'' OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=MSL1 PE=1 SV=1
Length = 111
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 53/85 (62%), Gaps = 5/85 (5%)
Query: 12 NFVYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNAL 67
N +YV+ I+ L+ +L+ +F+ FG+++ V++ K RGQAF+ + I A+ A
Sbjct: 28 NTLYVSQLNEKINMQRLRVNLFLLFATFGEVLK-VSMNFKKQRGQAFITMRTIDQASLAQ 86
Query: 68 RSMQGFPFYDKPMRIQYSKTDSDVI 92
S+ G F+ KP+++++SK+++ +
Sbjct: 87 ISLNGERFFGKPLKVEFSKSETKTL 111
>sp|P32605|RU1A_YEAST U1 small nuclear ribonucleoprotein A OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=MUD1 PE=1 SV=1
Length = 298
Score = 50.8 bits (120), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 63/127 (49%), Gaps = 4/127 (3%)
Query: 121 KSKKKAAKEQARLMQA-QQQQMQALSVQQPPVSQPAPPAPMA-TAGVPEQPPNQILFLTN 178
+S+K E R+++ + ++++ + QQ + Q P A + E PPN++L + N
Sbjct: 174 RSRKVEEAEIDRIVKEFETRRLENMKSQQENLKQSQKPLKRAKVSNTMENPPNKVLLIQN 233
Query: 179 LPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHA 238
LP T+E +LS + E+RLV R ++AFVE+E + K L +
Sbjct: 234 LPSGTTEQLLSQILGN-EALVEIRLVSVR-NLAFVEYETVADATKIKNQLGSTYKLQNND 291
Query: 239 MKISFAK 245
+ I FAK
Sbjct: 292 VTIGFAK 298
>sp|A8NS61|EIF3G_BRUMA Eukaryotic translation initiation factor 3 subunit G OS=Brugia
malayi GN=Bm1_08615 PE=3 SV=1
Length = 287
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 159 PMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRH-----DIAFV 213
P T G + +TNLPEE EM L LF V + ++H AFV
Sbjct: 195 PAVTGGAERRSEENTCRVTNLPEECDEMELRALFGTVGTVNRVFIAKDKHTNKPKGFAFV 254
Query: 214 EFENEMQSAAAKLALHGFKI 233
FE+ Q+ AA L+G+K+
Sbjct: 255 TFEHRSQTEAAIQKLNGYKL 274
>sp|Q7ZWA3|RBMX_DANRE RNA-binding motif protein, X chromosome OS=Danio rerio GN=rbmx
PE=2 SV=1
Length = 379
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 5 LAHICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALK---TLKMRGQAFVIFKEIA 61
+A +++ +++ +K L A FS+FG+I +++ +K T K RG AFV ++
Sbjct: 1 MAEADRPGKLFIGGLNTETSEKVLEAYFSKFGRISEVLLMKDRETNKSRGFAFVTYENPG 60
Query: 62 SATNALRSMQGFPFYDKPMRIQ 83
A +A R M G P KP++++
Sbjct: 61 DAKDAAREMNGKPLDGKPIKVE 82
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 174 LFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLAL 228
LF+ L ETSE +L F++F EV L+ +R AFV +EN + A +
Sbjct: 10 LFIGGLNTETSEKVLEAYFSKFGRISEVLLMKDRETNKSRGFAFVTYENPGDAKDAAREM 69
Query: 229 HG 230
+G
Sbjct: 70 NG 71
>sp|Q9VRV7|PM14_DROME Pre-mRNA branch site p14-like protein OS=Drosophila melanogaster
GN=CG13298 PE=2 SV=1
Length = 121
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%)
Query: 10 VTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
V +YV ++ +Y IF +FG I I T + RG AFV++++I A NA
Sbjct: 13 VNRLLYVRNLPYKITSDEMYDIFGKFGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDH 72
Query: 70 MQGFPFYDKPMRIQYSKTD 88
+ GF ++ + + Y +++
Sbjct: 73 LSGFNVCNRYLVVLYYQSN 91
>sp|Q5R9Z6|ELAV2_PONAB ELAV-like protein 2 OS=Pongo abelii GN=ELAVL2 PE=2 SV=1
Length = 359
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/247 (21%), Positives = 111/247 (44%), Gaps = 39/247 (15%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMD---IVALKTLKMRGQAFVIFKEIASATNALRSM 70
+YV+ + T +K L +FSQ+G+I+ +V T RG F+ F + A A++ +
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query: 71 QGF--PFYDKPMRIQYS-----KTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSK 123
G P +P+ ++++ KT+ ++S++ + P R+ P P+
Sbjct: 187 NGQKPPGATEPITVKFANNPSQKTNQAILSQL----YQSPN--RRYPGPL---------- 230
Query: 124 KKAAKEQARLMQAQQQQMQALSVQQ-PPVSQPAPPAPMATAGVPEQP-PNQILFLTNLPE 181
+QA+ + A V++ P++ + +A +P P +F+ NL
Sbjct: 231 ----AQQAQRFRLDNLLNMAYGVKRFSPMTIDGMTS-LAGINIPGHPGTGWCIFVYNLAP 285
Query: 182 ETSEMMLSMLFNQFPGFKEVRLVPNRH-----DIAFVEFENEMQSAAAKLALHGFKITPT 236
+ E +L +F F V+++ + + FV N ++A A +L+G+++
Sbjct: 286 DADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGD- 344
Query: 237 HAMKISF 243
+++SF
Sbjct: 345 RVLQVSF 351
>sp|Q12926|ELAV2_HUMAN ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1 SV=2
Length = 359
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/247 (21%), Positives = 111/247 (44%), Gaps = 39/247 (15%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMD---IVALKTLKMRGQAFVIFKEIASATNALRSM 70
+YV+ + T +K L +FSQ+G+I+ +V T RG F+ F + A A++ +
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query: 71 QGF--PFYDKPMRIQYS-----KTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSK 123
G P +P+ ++++ KT+ ++S++ + P R+ P P+
Sbjct: 187 NGQKPPGATEPITVKFANNPSQKTNQAILSQL----YQSPN--RRYPGPL---------- 230
Query: 124 KKAAKEQARLMQAQQQQMQALSVQQ-PPVSQPAPPAPMATAGVPEQP-PNQILFLTNLPE 181
+QA+ + A V++ P++ + +A +P P +F+ NL
Sbjct: 231 ----AQQAQRFRLDNLLNMAYGVKRFSPMTIDGMTS-LAGINIPGHPGTGWCIFVYNLAP 285
Query: 182 ETSEMMLSMLFNQFPGFKEVRLVPNRH-----DIAFVEFENEMQSAAAKLALHGFKITPT 236
+ E +L +F F V+++ + + FV N ++A A +L+G+++
Sbjct: 286 DADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGD- 344
Query: 237 HAMKISF 243
+++SF
Sbjct: 345 RVLQVSF 351
>sp|Q8CH84|ELAV2_RAT ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2 PE=2 SV=1
Length = 359
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/247 (21%), Positives = 111/247 (44%), Gaps = 39/247 (15%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMD---IVALKTLKMRGQAFVIFKEIASATNALRSM 70
+YV+ + T +K L +FSQ+G+I+ +V T RG F+ F + A A++ +
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query: 71 QGF--PFYDKPMRIQYS-----KTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSK 123
G P +P+ ++++ KT+ ++S++ + P R+ P P+
Sbjct: 187 NGQKPPGATEPITVKFANNPSQKTNQAILSQL----YQSPN--RRYPGPL---------- 230
Query: 124 KKAAKEQARLMQAQQQQMQALSVQQ-PPVSQPAPPAPMATAGVPEQP-PNQILFLTNLPE 181
+QA+ + A V++ P++ + +A +P P +F+ NL
Sbjct: 231 ----AQQAQRFRLDNLLNMAYGVKRFSPMTIDGMTS-LAGINIPGHPGTGWCIFVYNLAP 285
Query: 182 ETSEMMLSMLFNQFPGFKEVRLVPNRH-----DIAFVEFENEMQSAAAKLALHGFKITPT 236
+ E +L +F F V+++ + + FV N ++A A +L+G+++
Sbjct: 286 DADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGD- 344
Query: 237 HAMKISF 243
+++SF
Sbjct: 345 RVLQVSF 351
>sp|O59670|PM14_SCHPO Pre-mRNA branch site p14-like protein OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC29A3.07c PE=3
SV=2
Length = 115
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 41/75 (54%)
Query: 10 VTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
V + +++ ++S + +Y +F ++G + I T++ RG AFV+++ + A A
Sbjct: 10 VNSILFIKNLSFKITAEEMYDLFGRYGPVRQIRLGNTVQTRGTAFVVYENVQDARRACEK 69
Query: 70 MQGFPFYDKPMRIQY 84
+ G+ F D+ + + Y
Sbjct: 70 LSGYNFMDRYLVVHY 84
>sp|Q60899|ELAV2_MOUSE ELAV-like protein 2 OS=Mus musculus GN=Elavl2 PE=2 SV=1
Length = 360
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/246 (19%), Positives = 110/246 (44%), Gaps = 36/246 (14%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMD---IVALKTLKMRGQAFVIFKEIASATNALRSM 70
+YV+ + T +K L +FSQ+G+I+ +V T RG F+ F + A A++ +
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query: 71 QGF--PFYDKPMRIQYS-----KTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSK 123
G P +P+ ++++ KT+ ++S++ + P R+ P P+ A++++
Sbjct: 187 NGQKPPGATEPITVKFANNPSQKTNQAILSQL----YQSPN--RRYPGPL-----AQQAQ 235
Query: 124 KKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQP-PNQILFLTNLPEE 182
+ + + + +++ +A +P P +F+ NL +
Sbjct: 236 RFRLDNLLNMAYGVKSRFSPMTIDG--------MTSLAGINIPGHPGTGWCIFVYNLAPD 287
Query: 183 TSEMMLSMLFNQFPGFKEVRLVPNRH-----DIAFVEFENEMQSAAAKLALHGFKITPTH 237
E +L +F F V+++ + + FV N ++A A +L+G+++
Sbjct: 288 ADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGD-R 346
Query: 238 AMKISF 243
+++SF
Sbjct: 347 VLQVSF 352
>sp|Q86U06|RBM23_HUMAN Probable RNA-binding protein 23 OS=Homo sapiens GN=RBM23 PE=1 SV=1
Length = 439
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVALK---TLKMRGQAFVIFKEIASATNALRSM 70
+YV + + L IF FG+I +IV +K T + +G F+ F + A AL +
Sbjct: 265 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 324
Query: 71 QGFPFYDKPMRIQY 84
GF +PMR+ +
Sbjct: 325 NGFELAGRPMRVGH 338
>sp|Q91VM5|RMXL1_MOUSE RNA binding motif protein, X-linked-like-1 OS=Mus musculus
GN=Rbmxl1 PE=1 SV=1
Length = 388
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 40/62 (64%), Gaps = 3/62 (4%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVALK---TLKMRGQAFVIFKEIASATNALRSM 70
+++ +++ +K+L A+F ++G+I++I+ +K T K RG AFV F+ A A +A R M
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 71 QG 72
G
Sbjct: 70 NG 71
>sp|Q4R7F0|RBMX_MACFA RNA-binding motif protein, X chromosome OS=Macaca fascicularis
GN=RBMX PE=2 SV=1
Length = 391
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 40/62 (64%), Gaps = 3/62 (4%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVALK---TLKMRGQAFVIFKEIASATNALRSM 70
+++ +++ +K+L A+F ++G+I++++ +K T K RG AFV F+ A A +A R M
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 71 QG 72
G
Sbjct: 70 NG 71
>sp|A5A6M3|RBMX_PANTR RNA-binding motif protein, X chromosome OS=Pan troglodytes
GN=RBMX PE=2 SV=1
Length = 391
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 40/62 (64%), Gaps = 3/62 (4%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVALK---TLKMRGQAFVIFKEIASATNALRSM 70
+++ +++ +K+L A+F ++G+I++++ +K T K RG AFV F+ A A +A R M
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 71 QG 72
G
Sbjct: 70 NG 71
>sp|P38159|RBMX_HUMAN RNA-binding motif protein, X chromosome OS=Homo sapiens GN=RBMX
PE=1 SV=3
Length = 391
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 40/62 (64%), Gaps = 3/62 (4%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVALK---TLKMRGQAFVIFKEIASATNALRSM 70
+++ +++ +K+L A+F ++G+I++++ +K T K RG AFV F+ A A +A R M
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 71 QG 72
G
Sbjct: 70 NG 71
>sp|P26378|ELAV4_HUMAN ELAV-like protein 4 OS=Homo sapiens GN=ELAVL4 PE=1 SV=2
Length = 380
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/250 (21%), Positives = 107/250 (42%), Gaps = 31/250 (12%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMD---IVALKTLKMRGQAFVIFKEIASATNALRSM 70
+YV+ + T +K L +FSQ+G+I+ +V T RG F+ F + A A++ +
Sbjct: 134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 193
Query: 71 QGF--PFYDKPMRIQYSKTDSDVISK-IKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAA 127
G +P+ ++++ S S+ + + P R+ P P+ A+ +
Sbjct: 194 NGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPN--RRYPGPLHHQAQRFRLDN--- 248
Query: 128 KEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAG--------VPEQP-PNQILFLTN 178
L+ + +S PP + P +P+ G +P +F+ N
Sbjct: 249 -----LLNMAYGVKRLMSGPVPPSACPPRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYN 303
Query: 179 LPEETSEMMLSMLFNQFPGFKEVRLVPNRH-----DIAFVEFENEMQSAAAKLALHGFKI 233
L ++ E +L LF F V+++ + + FV N ++A A +L+G+++
Sbjct: 304 LSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRL 363
Query: 234 TPTHAMKISF 243
+++SF
Sbjct: 364 G-DRVLQVSF 372
>sp|O09032|ELAV4_RAT ELAV-like protein 4 OS=Rattus norvegicus GN=Elavl4 PE=1 SV=1
Length = 373
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/250 (21%), Positives = 107/250 (42%), Gaps = 31/250 (12%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMD---IVALKTLKMRGQAFVIFKEIASATNALRSM 70
+YV+ + T +K L +FSQ+G+I+ +V T RG F+ F + A A++ +
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 71 QGF--PFYDKPMRIQYSKTDSDVISK-IKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAA 127
G +P+ ++++ S S+ + + P R+ P P+ A+ +
Sbjct: 187 NGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPN--RRYPGPLHHQAQRFRLDN--- 241
Query: 128 KEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAG--------VPEQP-PNQILFLTN 178
L+ + +S PP + P +P+ G +P +F+ N
Sbjct: 242 -----LLNMAYGVKRLMSGPVPPSACPPRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYN 296
Query: 179 LPEETSEMMLSMLFNQFPGFKEVRLVPNRH-----DIAFVEFENEMQSAAAKLALHGFKI 233
L ++ E +L LF F V+++ + + FV N ++A A +L+G+++
Sbjct: 297 LSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRL 356
Query: 234 TPTHAMKISF 243
+++SF
Sbjct: 357 G-DRVLQVSF 365
>sp|Q9WV02|RBMX_MOUSE RNA-binding motif protein, X chromosome OS=Mus musculus GN=Rbmx
PE=1 SV=1
Length = 391
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 40/62 (64%), Gaps = 3/62 (4%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVALK---TLKMRGQAFVIFKEIASATNALRSM 70
+++ +++ +K+L A+F ++G+I++++ +K T K RG AFV F+ A A +A R M
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 71 QG 72
G
Sbjct: 70 NG 71
>sp|Q61701|ELAV4_MOUSE ELAV-like protein 4 OS=Mus musculus GN=Elavl4 PE=1 SV=1
Length = 385
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/250 (21%), Positives = 107/250 (42%), Gaps = 31/250 (12%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMD---IVALKTLKMRGQAFVIFKEIASATNALRSM 70
+YV+ + T +K L +FSQ+G+I+ +V T RG F+ F + A A++ +
Sbjct: 139 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 198
Query: 71 QGF--PFYDKPMRIQYSKTDSDVISK-IKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAA 127
G +P+ ++++ S S+ + + P R+ P P+ A+ +
Sbjct: 199 NGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPN--RRYPGPLHHQAQRFRLDN--- 253
Query: 128 KEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAG--------VPEQP-PNQILFLTN 178
L+ + +S PP + P +P+ G +P +F+ N
Sbjct: 254 -----LLNMAYGVKRLMSGPVPPSACPPRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYN 308
Query: 179 LPEETSEMMLSMLFNQFPGFKEVRLVPNRH-----DIAFVEFENEMQSAAAKLALHGFKI 233
L ++ E +L LF F V+++ + + FV N ++A A +L+G+++
Sbjct: 309 LSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRL 368
Query: 234 TPTHAMKISF 243
+++SF
Sbjct: 369 G-DRVLQVSF 377
>sp|Q4V898|RBMX_RAT RNA-binding motif protein, X chromosome OS=Rattus norvegicus
GN=Rbmx PE=1 SV=1
Length = 390
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 40/62 (64%), Gaps = 3/62 (4%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVALK---TLKMRGQAFVIFKEIASATNALRSM 70
+++ +++ +K+L A+F ++G+I++++ +K T K RG AFV F+ A A +A R M
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 71 QG 72
G
Sbjct: 70 NG 71
>sp|P59708|PM14_MOUSE Pre-mRNA branch site protein p14 OS=Mus musculus GN=Sf3b14 PE=2
SV=1
Length = 125
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 40/79 (50%)
Query: 10 VTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
V +Y+ ++ + +Y IF ++G I I T + RG A+V++++I A NA
Sbjct: 17 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDH 76
Query: 70 MQGFPFYDKPMRIQYSKTD 88
+ GF ++ + + Y +
Sbjct: 77 LSGFNVCNRYLVVLYYNAN 95
>sp|Q9Y3B4|PM14_HUMAN Pre-mRNA branch site protein p14 OS=Homo sapiens GN=SF3B14 PE=1
SV=1
Length = 125
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 40/79 (50%)
Query: 10 VTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
V +Y+ ++ + +Y IF ++G I I T + RG A+V++++I A NA
Sbjct: 17 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDH 76
Query: 70 MQGFPFYDKPMRIQYSKTD 88
+ GF ++ + + Y +
Sbjct: 77 LSGFNVCNRYLVVLYYNAN 95
>sp|Q6IRQ4|RBMX_XENLA RNA-binding motif protein, X chromosome OS=Xenopus laevis GN=rbmx
PE=2 SV=1
Length = 370
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVALK---TLKMRGQAFVIFKEIASATNALRSM 70
+++ +++ +K+L A+F ++G++++++ +K T K RG AFV F+ A A +A R +
Sbjct: 10 LFIGGLNTETNEKALEAVFCKYGRVVEVLLMKDRETNKSRGFAFVTFESPADAKDAAREL 69
Query: 71 QGFPFYDKPMRIQ 83
G KP++++
Sbjct: 70 NGKALDGKPIKVE 82
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 70/192 (36%), Gaps = 43/192 (22%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDI-VALKTLKMRGQAFVIFKEIASATNALRSMQG 72
+YV ++ + L FS FG I V ++ + +G FV F AT A+ M G
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 73 FPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQAR 132
KP+ + ++ + + + +M+R VR P PV +P
Sbjct: 356 RIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINP---------------- 399
Query: 133 LMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQ-------PPNQILFLTNLPEETSE 185
QPAPP+ A +P+ PP+QI L P T++
Sbjct: 400 -------------------YQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQ 440
Query: 186 MMLSMLFNQFPG 197
F PG
Sbjct: 441 GARPHPFQNMPG 452
Score = 37.4 bits (85), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMR---GQAFVIFKEIASATNALRSM 70
+YV + + LY FS G I+ I + + R G A+V F++ A A AL +M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 71 QGFPFYDKPMRIQYSKTD 88
KP+RI +S+ D
Sbjct: 73 NFDVIKGKPVRIMWSQRD 90
Score = 34.7 bits (78), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDI-VALKTLKMRGQAFVIFKEIASATNALRSMQG 72
+++ ++ + K+LY FS FG I+ V +G FV F+ +A A+ M G
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160
Query: 73 FPFYDK 78
D+
Sbjct: 161 MLLNDR 166
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 70/192 (36%), Gaps = 43/192 (22%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDI-VALKTLKMRGQAFVIFKEIASATNALRSMQG 72
+YV ++ + L FS FG I V ++ + +G FV F AT A+ M G
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 73 FPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQAR 132
KP+ + ++ + + + +M+R VR P PV +P
Sbjct: 356 RIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINP---------------- 399
Query: 133 LMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQ-------PPNQILFLTNLPEETSE 185
QPAPP+ A +P+ PP+QI L P T++
Sbjct: 400 -------------------YQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQ 440
Query: 186 MMLSMLFNQFPG 197
F PG
Sbjct: 441 GARPHPFQNMPG 452
Score = 37.7 bits (86), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMR---GQAFVIFKEIASATNALRSM 70
+YV + + LY FS G I+ I + + R G A+V F++ A A AL +M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 71 QGFPFYDKPMRIQYSKTD 88
KP+RI +S+ D
Sbjct: 73 NFDVIKGKPVRIMWSQRD 90
Score = 34.7 bits (78), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDI-VALKTLKMRGQAFVIFKEIASATNALRSMQG 72
+++ ++ + K+LY FS FG I+ V +G FV F+ +A A+ M G
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160
Query: 73 FPFYDK 78
D+
Sbjct: 161 MLLNDR 166
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2
Length = 636
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 70/192 (36%), Gaps = 43/192 (22%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDI-VALKTLKMRGQAFVIFKEIASATNALRSMQG 72
+YV ++ + L FS FG I V ++ + +G FV F AT A+ M G
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 73 FPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQAR 132
KP+ + ++ + + + +M+R VR P PV +P
Sbjct: 356 RIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINP---------------- 399
Query: 133 LMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQ-------PPNQILFLTNLPEETSE 185
QPAPP+ A +P+ PP+QI L P T++
Sbjct: 400 -------------------YQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQ 440
Query: 186 MMLSMLFNQFPG 197
F PG
Sbjct: 441 GARPHPFQNMPG 452
Score = 37.7 bits (86), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMR---GQAFVIFKEIASATNALRSM 70
+YV + + LY FS G I+ I + + R G A+V F++ A A AL +M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 71 QGFPFYDKPMRIQYSKTD 88
KP+RI +S+ D
Sbjct: 73 NFDVIKGKPVRIMWSQRD 90
Score = 34.7 bits (78), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDI-VALKTLKMRGQAFVIFKEIASATNALRSMQG 72
+++ ++ + K+LY FS FG I+ V +G FV F+ +A A+ M G
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160
Query: 73 FPFYDK 78
D+
Sbjct: 161 MLLNDR 166
>sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1
Length = 636
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 70/192 (36%), Gaps = 43/192 (22%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDI-VALKTLKMRGQAFVIFKEIASATNALRSMQG 72
+YV ++ + L FS FG I V ++ + +G FV F AT A+ M G
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 73 FPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQAR 132
KP+ + ++ + + + +M+R VR P PV +P
Sbjct: 356 RIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINP---------------- 399
Query: 133 LMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQ-------PPNQILFLTNLPEETSE 185
QPAPP+ A +P+ PP+QI L P T++
Sbjct: 400 -------------------YQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQ 440
Query: 186 MMLSMLFNQFPG 197
F PG
Sbjct: 441 GARPHPFQNMPG 452
Score = 37.7 bits (86), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMR---GQAFVIFKEIASATNALRSM 70
+YV + + LY FS G I+ I + + R G A+V F++ A A AL +M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 71 QGFPFYDKPMRIQYSKTD 88
KP+RI +S+ D
Sbjct: 73 NFDVIKGKPVRIMWSQRD 90
Score = 34.7 bits (78), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDI-VALKTLKMRGQAFVIFKEIASATNALRSMQG 72
+++ ++ + K+LY FS FG I+ V +G FV F+ +A A+ M G
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160
Query: 73 FPFYDK 78
D+
Sbjct: 161 MLLNDR 166
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
Length = 636
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 70/192 (36%), Gaps = 43/192 (22%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDI-VALKTLKMRGQAFVIFKEIASATNALRSMQG 72
+YV ++ + L FS FG I V ++ + +G FV F AT A+ M G
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 73 FPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQAR 132
KP+ + ++ + + + +M+R VR P PV +P
Sbjct: 356 RIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINP---------------- 399
Query: 133 LMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQ-------PPNQILFLTNLPEETSE 185
QPAPP+ A +P+ PP+QI L P T++
Sbjct: 400 -------------------YQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQ 440
Query: 186 MMLSMLFNQFPG 197
F PG
Sbjct: 441 GARPHPFQNMPG 452
Score = 38.1 bits (87), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMR---GQAFVIFKEIASATNALRSM 70
+YV + + LY FS G I+ I + + R G A+V F++ A A AL +M
Sbjct: 13 LYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 71 QGFPFYDKPMRIQYSKTD 88
KP+RI +S+ D
Sbjct: 73 NFDVIKGKPVRIMWSQRD 90
Score = 34.7 bits (78), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDI-VALKTLKMRGQAFVIFKEIASATNALRSMQG 72
+++ ++ + K+LY FS FG I+ V +G FV F+ +A A+ M G
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160
Query: 73 FPFYDK 78
D+
Sbjct: 161 MLLNDR 166
>sp|O13845|RSD1_SCHPO RNA-binding protein rsd1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rsd1 PE=1 SV=2
Length = 603
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/256 (24%), Positives = 109/256 (42%), Gaps = 47/256 (18%)
Query: 3 IILAHICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL---KMRGQAFVIFKE 59
I +CV+N H + TD + + AIF FG I + V L+ + +G ++ ++
Sbjct: 337 IPFHRLCVSNI----HFNLTD--EDVKAIFEPFGDI-EFVHLQRDDQNRSKGFGYIQYRN 389
Query: 60 IASATNALRSMQGFPFYDKPMRIQY------SKTDSDVISKIKGTFMERPKKVRKQPAPV 113
SA NAL M GF + MR+ ++T S ++ + T ++ R QP+
Sbjct: 390 PISARNALEKMNGFDLAGRNMRVCLGNDKFTTETTSSMLKRFDETLA---RQERSQPSQR 446
Query: 114 EDPAEAKKSK--KKAA-----KEQARLMQAQQ-----QQMQALSVQQPPVSQPAPPAPMA 161
+ +S+ ++AA +E++R + + + + +S VS+P PP
Sbjct: 447 NGGSSTYESQDYREAAPLSPTEEESRPITRDELMKKLARSEDISDNSKLVSEPEPPIRSR 506
Query: 162 TAGV-------PEQPPNQILFLT-NLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFV 213
A + E PN + L ++ EE E ++ + +VPN FV
Sbjct: 507 CALLENMFNPAEETSPNWVQELEQDVKEECDEKYGKVV--------HIAVVPNELGQIFV 558
Query: 214 EFENEMQSAAAKLALH 229
+FEN + A LH
Sbjct: 559 KFENADFAEKAITGLH 574
>sp|D4AE41|RMXL1_RAT RNA binding motif protein, X-linked-like-1 OS=Rattus norvegicus
GN=Rbmxl1 PE=3 SV=1
Length = 388
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 39/62 (62%), Gaps = 3/62 (4%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVALK---TLKMRGQAFVIFKEIASATNALRSM 70
+++ +++ +K+L A+F ++G+I++I+ +K T K RG AFV F+ A A + R M
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARDM 69
Query: 71 QG 72
G
Sbjct: 70 NG 71
>sp|P84586|RMXRL_RAT RNA-binding motif protein, X chromosome retrogene-like OS=Rattus
norvegicus GN=Rbmxrtl PE=3 SV=1
Length = 388
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 39/62 (62%), Gaps = 3/62 (4%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVALK---TLKMRGQAFVIFKEIASATNALRSM 70
+++ +++ +K+L A+F ++G+I++I+ +K T K RG AFV F+ A A + R M
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARDM 69
Query: 71 QG 72
G
Sbjct: 70 NG 71
>sp|Q8ITY4|PM14_CAEEL Pre-mRNA branch site p14-like protein OS=Caenorhabditis elegans
GN=C50D2.5 PE=3 SV=2
Length = 138
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 38/75 (50%)
Query: 10 VTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
V +Y+ ++ + +Y IF +FG + I T + RG AFV++++I A A
Sbjct: 17 VNRILYIKNLPYKITTEEMYEIFGKFGAVRQIRVGNTAETRGTAFVVYEDIFDAKTACEH 76
Query: 70 MQGFPFYDKPMRIQY 84
+ G+ ++ + + Y
Sbjct: 77 LSGYNVSNRYLVVLY 91
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.130 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,548,668
Number of Sequences: 539616
Number of extensions: 3155152
Number of successful extensions: 31367
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 768
Number of HSP's that attempted gapping in prelim test: 27698
Number of HSP's gapped (non-prelim): 3527
length of query: 246
length of database: 191,569,459
effective HSP length: 114
effective length of query: 132
effective length of database: 130,053,235
effective search space: 17167027020
effective search space used: 17167027020
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)