Query psy4057
Match_columns 246
No_of_seqs 114 out of 1347
Neff 9.8
Searched_HMMs 46136
Date Sat Aug 17 00:14:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4057.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4057hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 1.1E-34 2.5E-39 242.6 19.8 163 7-246 103-274 (346)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.7E-34 3.6E-39 245.5 19.9 234 10-245 2-347 (352)
3 TIGR01645 half-pint poly-U bin 100.0 1.1E-32 2.5E-37 242.0 19.4 170 9-245 105-282 (612)
4 KOG0148|consensus 100.0 1E-32 2.3E-37 213.3 16.8 173 11-246 62-237 (321)
5 KOG0117|consensus 100.0 1.7E-32 3.6E-37 225.3 16.3 228 8-245 80-329 (506)
6 KOG4206|consensus 100.0 3.8E-31 8.2E-36 200.9 18.4 214 5-246 3-221 (221)
7 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1.7E-30 3.8E-35 228.4 22.6 195 8-245 272-478 (481)
8 TIGR01622 SF-CC1 splicing fact 100.0 8.3E-31 1.8E-35 230.1 20.6 171 8-245 86-264 (457)
9 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 2.2E-30 4.8E-35 227.7 21.1 168 10-245 1-172 (481)
10 TIGR01648 hnRNP-R-Q heterogene 100.0 2.9E-30 6.4E-35 226.5 18.5 221 11-245 58-305 (578)
11 KOG0131|consensus 100.0 3E-30 6.4E-35 188.9 13.4 163 7-246 5-176 (203)
12 TIGR01628 PABP-1234 polyadenyl 100.0 1.1E-29 2.5E-34 228.0 18.8 157 12-244 1-164 (562)
13 TIGR01628 PABP-1234 polyadenyl 100.0 5.7E-29 1.2E-33 223.4 19.3 178 9-246 176-363 (562)
14 KOG0144|consensus 100.0 7.6E-29 1.6E-33 203.0 12.0 158 11-244 34-203 (510)
15 TIGR01642 U2AF_lg U2 snRNP aux 100.0 1.4E-27 2.9E-32 212.5 19.9 186 9-244 293-499 (509)
16 TIGR01622 SF-CC1 splicing fact 100.0 6.1E-27 1.3E-31 205.7 22.0 230 9-244 184-445 (457)
17 TIGR01642 U2AF_lg U2 snRNP aux 100.0 3.1E-27 6.7E-32 210.2 20.0 184 9-245 173-373 (509)
18 KOG0145|consensus 100.0 2.3E-27 5.1E-32 182.9 13.2 159 10-245 40-207 (360)
19 KOG0127|consensus 99.9 3.5E-27 7.6E-32 198.3 15.2 181 12-244 6-193 (678)
20 KOG0127|consensus 99.9 3.8E-26 8.3E-31 192.1 16.7 227 11-244 117-375 (678)
21 KOG0109|consensus 99.9 1.1E-26 2.5E-31 181.6 10.7 145 12-244 3-147 (346)
22 KOG0145|consensus 99.9 5E-25 1.1E-29 170.1 16.0 207 11-244 127-355 (360)
23 KOG0110|consensus 99.9 1.5E-24 3.4E-29 187.6 12.8 164 13-245 517-691 (725)
24 KOG0123|consensus 99.9 8.3E-24 1.8E-28 178.2 16.3 146 12-244 2-150 (369)
25 KOG0124|consensus 99.9 2.7E-24 5.9E-29 173.2 12.1 164 12-242 114-285 (544)
26 KOG0147|consensus 99.9 4.7E-24 1E-28 180.0 11.8 229 8-244 275-525 (549)
27 KOG0144|consensus 99.9 4.5E-23 9.6E-28 169.3 12.7 85 7-91 120-209 (510)
28 TIGR01645 half-pint poly-U bin 99.9 3.8E-21 8.2E-26 169.6 23.7 81 9-89 202-285 (612)
29 KOG0146|consensus 99.9 1.1E-22 2.3E-27 157.8 11.3 235 10-245 18-363 (371)
30 KOG0123|consensus 99.9 1.9E-21 4.1E-26 163.9 14.7 170 5-245 70-244 (369)
31 KOG0105|consensus 99.9 1.6E-20 3.4E-25 138.3 15.1 173 9-234 4-176 (241)
32 KOG1457|consensus 99.9 1.7E-21 3.7E-26 147.4 9.1 221 11-234 34-274 (284)
33 KOG1190|consensus 99.8 1.1E-19 2.4E-24 148.5 15.9 191 11-245 297-489 (492)
34 KOG0148|consensus 99.8 3.2E-20 6.8E-25 144.3 11.3 130 12-246 7-141 (321)
35 KOG0147|consensus 99.8 4.7E-21 1E-25 162.0 7.2 169 10-243 178-354 (549)
36 KOG0110|consensus 99.8 3E-19 6.6E-24 155.0 12.5 207 7-245 381-596 (725)
37 KOG1190|consensus 99.8 1.7E-18 3.7E-23 141.7 15.4 213 14-245 153-371 (492)
38 KOG0124|consensus 99.8 1.6E-17 3.4E-22 134.4 17.2 84 7-90 206-292 (544)
39 KOG1548|consensus 99.8 1.5E-17 3.3E-22 133.5 16.8 193 11-243 134-348 (382)
40 KOG4205|consensus 99.8 1.3E-18 2.9E-23 142.0 9.9 161 10-244 5-173 (311)
41 PLN03134 glycine-rich RNA-bind 99.8 4.2E-18 9.2E-23 125.8 10.5 81 9-89 32-115 (144)
42 PLN03134 glycine-rich RNA-bind 99.8 1.8E-17 3.8E-22 122.5 11.7 77 168-245 31-112 (144)
43 KOG0106|consensus 99.7 7.1E-18 1.5E-22 129.9 8.2 166 12-243 2-167 (216)
44 KOG4212|consensus 99.7 1.1E-15 2.4E-20 126.4 18.0 206 7-242 40-289 (608)
45 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 8E-17 1.7E-21 137.1 10.7 80 9-88 267-349 (352)
46 PF00076 RRM_1: RNA recognitio 99.7 6.6E-17 1.4E-21 104.9 7.4 68 14-81 1-70 (70)
47 PF00076 RRM_1: RNA recognitio 99.7 2.4E-16 5.2E-21 102.3 7.3 66 174-240 1-70 (70)
48 PLN03120 nucleic acid binding 99.7 4E-16 8.7E-21 123.3 9.6 75 11-86 4-78 (260)
49 TIGR01648 hnRNP-R-Q heterogene 99.7 7.9E-16 1.7E-20 135.9 12.0 137 9-199 231-369 (578)
50 KOG1456|consensus 99.7 1.4E-14 3E-19 117.8 18.1 232 7-245 116-361 (494)
51 KOG1456|consensus 99.7 3.4E-15 7.4E-20 121.3 13.8 168 5-245 25-197 (494)
52 KOG0107|consensus 99.6 7.9E-16 1.7E-20 112.7 8.8 76 169-245 8-83 (195)
53 KOG0114|consensus 99.6 2.5E-15 5.4E-20 100.6 9.9 75 169-244 16-92 (124)
54 KOG0114|consensus 99.6 1.7E-15 3.7E-20 101.4 8.9 79 8-86 15-93 (124)
55 TIGR01659 sex-lethal sex-letha 99.6 1.2E-15 2.7E-20 128.1 10.1 78 167-245 103-185 (346)
56 KOG0121|consensus 99.6 5.1E-16 1.1E-20 107.9 6.1 80 6-85 31-113 (153)
57 KOG0120|consensus 99.6 1.1E-15 2.3E-20 131.1 9.4 181 9-243 287-488 (500)
58 PLN03121 nucleic acid binding 99.6 2.7E-15 5.8E-20 116.8 9.3 77 10-87 4-80 (243)
59 PLN03120 nucleic acid binding 99.6 4.7E-15 1E-19 117.3 9.9 73 171-245 4-78 (260)
60 KOG0125|consensus 99.6 1.6E-15 3.4E-20 121.3 6.9 78 11-88 96-174 (376)
61 KOG0121|consensus 99.6 3.4E-15 7.4E-20 103.8 7.1 73 170-243 35-112 (153)
62 KOG0107|consensus 99.6 5.1E-15 1.1E-19 108.5 8.1 81 7-89 6-86 (195)
63 COG0724 RNA-binding proteins ( 99.6 2.2E-14 4.7E-19 117.3 12.7 167 11-231 115-290 (306)
64 KOG4211|consensus 99.6 8.3E-14 1.8E-18 117.1 16.0 160 12-241 11-176 (510)
65 PF14259 RRM_6: RNA recognitio 99.6 1.1E-14 2.5E-19 94.5 7.9 68 14-81 1-70 (70)
66 PF14259 RRM_6: RNA recognitio 99.6 1.4E-14 3E-19 94.0 8.1 66 174-240 1-70 (70)
67 KOG0122|consensus 99.6 2.2E-14 4.7E-19 110.5 10.4 75 170-245 188-267 (270)
68 KOG0111|consensus 99.6 2.6E-15 5.7E-20 113.8 5.3 81 9-89 8-91 (298)
69 KOG0122|consensus 99.6 1E-14 2.2E-19 112.3 8.6 79 10-88 188-269 (270)
70 PF13893 RRM_5: RNA recognitio 99.6 2.6E-14 5.7E-19 88.5 7.7 56 188-244 1-56 (56)
71 PLN03213 repressor of silencin 99.5 2.4E-14 5.2E-19 120.3 9.0 80 8-88 7-88 (759)
72 KOG4207|consensus 99.5 1.6E-14 3.5E-19 108.5 6.3 80 8-87 10-92 (256)
73 PF13893 RRM_5: RNA recognitio 99.5 7.8E-14 1.7E-18 86.3 8.2 56 28-85 1-56 (56)
74 KOG0149|consensus 99.5 1.9E-14 4.2E-19 110.3 6.5 75 11-86 12-89 (247)
75 KOG0125|consensus 99.5 4.6E-14 9.9E-19 113.0 8.6 76 168-244 93-171 (376)
76 KOG0126|consensus 99.5 1E-15 2.2E-20 112.7 -0.8 77 10-86 34-113 (219)
77 KOG4207|consensus 99.5 2.9E-14 6.3E-19 107.2 6.1 75 170-245 12-91 (256)
78 smart00362 RRM_2 RNA recogniti 99.5 1.1E-13 2.4E-18 89.4 8.2 69 173-242 1-72 (72)
79 KOG0113|consensus 99.5 6.6E-14 1.4E-18 110.7 8.2 80 8-87 98-180 (335)
80 KOG4212|consensus 99.5 2.3E-12 5E-17 107.0 17.4 74 170-244 535-608 (608)
81 smart00362 RRM_2 RNA recogniti 99.5 1.6E-13 3.6E-18 88.7 8.5 71 13-83 1-72 (72)
82 KOG4206|consensus 99.5 1.1E-13 2.4E-18 105.9 8.1 78 168-246 6-89 (221)
83 PLN03121 nucleic acid binding 99.5 2.2E-13 4.7E-18 106.3 9.8 72 170-243 4-77 (243)
84 KOG0130|consensus 99.5 9.2E-14 2E-18 97.6 6.6 74 170-244 71-149 (170)
85 PLN03213 repressor of silencin 99.5 2.1E-13 4.6E-18 114.7 9.6 77 168-245 7-86 (759)
86 cd00590 RRM RRM (RNA recogniti 99.4 8.1E-13 1.7E-17 85.8 9.1 70 173-243 1-74 (74)
87 KOG0113|consensus 99.4 5.8E-13 1.3E-17 105.5 9.8 78 167-245 97-179 (335)
88 cd00590 RRM RRM (RNA recogniti 99.4 1.7E-12 3.6E-17 84.3 8.8 72 13-84 1-74 (74)
89 KOG0130|consensus 99.4 4.3E-13 9.3E-18 94.3 6.2 77 11-87 72-151 (170)
90 KOG0105|consensus 99.4 3.6E-13 7.8E-18 99.7 6.1 75 170-245 5-81 (241)
91 KOG0111|consensus 99.4 1.3E-13 2.9E-18 104.6 3.7 75 170-245 9-88 (298)
92 smart00360 RRM RNA recognition 99.4 1.1E-12 2.4E-17 84.4 7.6 66 176-242 1-71 (71)
93 smart00360 RRM RNA recognition 99.4 1.2E-12 2.7E-17 84.2 7.6 68 16-83 1-71 (71)
94 KOG0117|consensus 99.4 2.6E-12 5.7E-17 106.9 10.1 76 169-244 81-161 (506)
95 KOG0108|consensus 99.4 1.4E-12 3E-17 111.5 8.3 77 12-88 19-98 (435)
96 KOG0131|consensus 99.4 8.9E-13 1.9E-17 97.4 5.5 74 170-244 8-86 (203)
97 KOG0108|consensus 99.3 3.3E-12 7.1E-17 109.2 8.0 73 172-245 19-96 (435)
98 KOG0126|consensus 99.3 1.5E-13 3.2E-18 101.4 -0.7 76 167-243 31-111 (219)
99 COG0724 RNA-binding proteins ( 99.3 8.4E-12 1.8E-16 102.0 9.2 74 171-245 115-193 (306)
100 smart00361 RRM_1 RNA recogniti 99.3 9.9E-12 2.2E-16 80.5 7.1 57 26-82 3-69 (70)
101 KOG0112|consensus 99.3 2.6E-12 5.6E-17 115.0 5.2 158 8-245 369-529 (975)
102 KOG0149|consensus 99.3 9.3E-12 2E-16 95.7 7.1 72 168-241 9-85 (247)
103 KOG0109|consensus 99.2 8.3E-12 1.8E-16 98.7 5.1 70 172-245 3-72 (346)
104 KOG1365|consensus 99.2 4.9E-11 1.1E-15 97.7 9.4 181 11-241 159-356 (508)
105 KOG0129|consensus 99.2 3.3E-10 7.2E-15 96.3 14.6 174 8-241 256-448 (520)
106 smart00361 RRM_1 RNA recogniti 99.2 4.7E-11 1E-15 77.3 6.7 57 185-242 2-70 (70)
107 KOG0132|consensus 99.2 3.7E-11 8.1E-16 106.2 7.7 73 171-245 421-493 (894)
108 KOG0120|consensus 99.2 4.8E-11 1E-15 102.8 8.2 176 10-244 174-366 (500)
109 KOG0132|consensus 99.2 8.7E-11 1.9E-15 103.9 7.9 75 11-88 421-495 (894)
110 KOG4454|consensus 99.1 2E-11 4.3E-16 92.8 1.9 140 7-232 5-149 (267)
111 KOG0415|consensus 99.1 8.4E-11 1.8E-15 95.4 5.6 84 7-90 235-321 (479)
112 KOG0153|consensus 99.1 3E-10 6.6E-15 92.0 7.6 75 10-87 227-302 (377)
113 KOG0146|consensus 99.1 1.3E-10 2.7E-15 91.1 5.2 82 7-88 281-365 (371)
114 KOG0153|consensus 99.1 3.9E-10 8.5E-15 91.4 8.2 77 167-245 224-301 (377)
115 KOG1457|consensus 99.1 1.6E-09 3.4E-14 82.9 10.0 76 170-245 33-116 (284)
116 KOG0415|consensus 99.1 2.7E-10 5.8E-15 92.6 6.0 78 166-244 234-316 (479)
117 KOG4208|consensus 99.0 9.6E-10 2.1E-14 83.2 8.0 82 7-88 45-130 (214)
118 KOG4660|consensus 99.0 5E-10 1.1E-14 96.0 4.9 176 8-244 72-247 (549)
119 KOG4676|consensus 99.0 5.8E-10 1.3E-14 91.7 4.7 197 9-233 5-213 (479)
120 KOG4660|consensus 98.9 1.2E-09 2.5E-14 93.8 5.6 72 168-240 72-143 (549)
121 KOG4661|consensus 98.9 2.8E-09 6.1E-14 91.7 7.0 79 9-87 403-484 (940)
122 KOG4661|consensus 98.9 3.4E-09 7.5E-14 91.1 6.6 75 170-245 404-483 (940)
123 KOG4210|consensus 98.9 2.8E-09 6.2E-14 87.2 5.4 168 10-245 87-262 (285)
124 KOG0226|consensus 98.9 3.1E-09 6.6E-14 82.8 5.1 141 29-241 117-264 (290)
125 KOG4208|consensus 98.9 9.7E-09 2.1E-13 77.8 7.6 76 167-243 45-126 (214)
126 KOG0151|consensus 98.8 7.9E-09 1.7E-13 90.9 7.5 78 167-245 170-255 (877)
127 KOG2193|consensus 98.8 4.1E-10 8.8E-15 93.5 -1.0 146 12-243 2-153 (584)
128 KOG0533|consensus 98.8 2E-08 4.2E-13 79.6 8.5 80 10-89 82-163 (243)
129 KOG4211|consensus 98.8 1.6E-07 3.4E-12 79.8 12.9 208 10-226 102-339 (510)
130 KOG0128|consensus 98.8 8.2E-10 1.8E-14 98.8 -1.5 130 11-234 667-803 (881)
131 KOG0533|consensus 98.7 5.6E-08 1.2E-12 77.0 8.5 76 167-243 79-158 (243)
132 PF11608 Limkain-b1: Limkain b 98.7 1.1E-07 2.4E-12 61.7 7.7 69 172-245 3-75 (90)
133 KOG4205|consensus 98.7 1.9E-08 4.1E-13 82.8 5.2 80 9-89 95-177 (311)
134 PF04059 RRM_2: RNA recognitio 98.7 2.3E-07 5E-12 63.2 8.6 74 172-245 2-85 (97)
135 KOG4454|consensus 98.6 1.7E-08 3.7E-13 77.1 2.3 75 168-243 6-83 (267)
136 KOG0151|consensus 98.6 8.5E-08 1.8E-12 84.6 6.2 79 9-87 172-256 (877)
137 KOG1548|consensus 98.6 2.2E-07 4.8E-12 75.6 7.7 75 170-245 133-219 (382)
138 KOG0116|consensus 98.6 1.1E-07 2.5E-12 81.2 6.3 76 9-85 286-364 (419)
139 PF08777 RRM_3: RNA binding mo 98.5 4.5E-07 9.8E-12 63.1 6.6 68 172-241 2-74 (105)
140 PF11608 Limkain-b1: Limkain b 98.5 6.9E-07 1.5E-11 58.1 6.6 69 12-87 3-76 (90)
141 KOG0106|consensus 98.5 1.5E-07 3.3E-12 73.1 3.8 70 172-245 2-71 (216)
142 KOG0226|consensus 98.4 2.7E-07 5.8E-12 72.2 4.1 76 10-85 189-267 (290)
143 KOG4209|consensus 98.4 5.7E-07 1.2E-11 71.4 5.9 77 167-245 97-178 (231)
144 KOG4209|consensus 98.4 5.7E-07 1.2E-11 71.4 5.2 79 8-87 98-179 (231)
145 KOG0116|consensus 98.3 8.4E-07 1.8E-11 75.9 6.0 71 171-243 288-363 (419)
146 KOG4307|consensus 98.3 2.4E-06 5.2E-11 75.6 7.9 184 11-242 309-509 (944)
147 PF04059 RRM_2: RNA recognitio 98.3 5.1E-06 1.1E-10 56.6 7.8 76 12-87 2-86 (97)
148 PF08777 RRM_3: RNA binding mo 98.1 1.4E-05 3E-10 55.7 6.3 70 12-84 2-76 (105)
149 PF14605 Nup35_RRM_2: Nup53/35 98.0 1.8E-05 4E-10 47.8 4.9 52 172-225 2-53 (53)
150 KOG1365|consensus 97.9 0.00029 6.3E-09 58.7 12.2 149 15-227 64-225 (508)
151 COG5175 MOT2 Transcriptional r 97.9 3.1E-05 6.8E-10 63.2 6.1 74 170-244 113-200 (480)
152 COG5175 MOT2 Transcriptional r 97.8 4.8E-05 1E-09 62.1 5.9 77 11-87 114-202 (480)
153 KOG2314|consensus 97.8 7.7E-05 1.7E-09 64.9 7.3 74 169-242 56-139 (698)
154 PF08952 DUF1866: Domain of un 97.8 0.00019 4.1E-09 52.3 8.2 73 7-85 23-104 (146)
155 KOG2314|consensus 97.8 0.00011 2.3E-09 64.1 7.8 74 11-84 58-140 (698)
156 KOG1995|consensus 97.8 3.3E-05 7.2E-10 63.6 4.6 79 167-246 62-153 (351)
157 PF05172 Nup35_RRM: Nup53/35/4 97.8 0.00016 3.5E-09 49.6 7.1 72 171-244 6-89 (100)
158 KOG0115|consensus 97.7 0.00012 2.6E-09 57.7 6.9 59 172-230 32-94 (275)
159 KOG1995|consensus 97.7 3.8E-05 8.3E-10 63.3 4.3 83 7-89 62-155 (351)
160 PF08952 DUF1866: Domain of un 97.7 0.00027 5.9E-09 51.5 7.7 72 167-243 23-103 (146)
161 PF14605 Nup35_RRM_2: Nup53/35 97.7 0.00021 4.5E-09 43.2 5.8 52 12-67 2-53 (53)
162 KOG4307|consensus 97.6 0.0002 4.4E-09 63.8 7.8 72 171-243 867-943 (944)
163 KOG0128|consensus 97.6 2.8E-06 6.1E-11 76.8 -4.3 155 12-234 572-735 (881)
164 KOG2202|consensus 97.6 4.4E-05 9.6E-10 60.1 2.6 61 26-86 83-146 (260)
165 KOG3152|consensus 97.6 5E-05 1.1E-09 59.8 2.8 66 170-235 73-155 (278)
166 KOG2202|consensus 97.6 4.5E-05 9.7E-10 60.1 2.5 58 186-244 83-145 (260)
167 KOG4210|consensus 97.6 6.3E-05 1.4E-09 61.9 3.2 80 9-89 183-265 (285)
168 KOG1855|consensus 97.5 9E-05 1.9E-09 62.4 4.0 65 8-72 228-308 (484)
169 KOG1855|consensus 97.5 6.8E-05 1.5E-09 63.1 3.1 65 167-231 227-309 (484)
170 PF05172 Nup35_RRM: Nup53/35/4 97.4 0.0011 2.4E-08 45.5 7.6 74 10-85 5-89 (100)
171 KOG1996|consensus 97.4 0.00042 9.2E-09 55.7 6.1 74 170-244 280-364 (378)
172 KOG4676|consensus 97.4 0.00019 4.1E-09 59.9 3.9 68 172-241 8-83 (479)
173 KOG1996|consensus 97.4 0.00062 1.3E-08 54.8 6.4 65 21-85 296-364 (378)
174 PF08675 RNA_bind: RNA binding 97.2 0.0018 3.9E-08 42.4 6.4 57 170-230 8-64 (87)
175 KOG3152|consensus 97.2 0.00023 5E-09 56.1 2.6 70 10-79 73-157 (278)
176 PF15023 DUF4523: Protein of u 97.2 0.0036 7.8E-08 45.2 8.3 74 7-85 82-159 (166)
177 KOG2416|consensus 97.2 0.0004 8.6E-09 60.9 3.9 80 6-88 439-522 (718)
178 PF08675 RNA_bind: RNA binding 97.1 0.004 8.7E-08 40.8 7.1 55 11-71 9-63 (87)
179 KOG2416|consensus 97.0 0.00085 1.8E-08 58.9 4.6 78 167-245 440-520 (718)
180 KOG4574|consensus 96.8 0.00091 2E-08 61.0 3.0 74 171-245 298-372 (1007)
181 PF10309 DUF2414: Protein of u 96.8 0.011 2.3E-07 36.7 6.9 55 170-228 4-62 (62)
182 KOG0112|consensus 96.7 0.0024 5.2E-08 58.8 5.1 78 7-87 451-530 (975)
183 KOG0115|consensus 96.7 0.0022 4.7E-08 50.8 4.2 75 11-85 31-111 (275)
184 PF07576 BRAP2: BRCA1-associat 96.6 0.022 4.7E-07 39.9 8.2 68 9-76 11-80 (110)
185 KOG0129|consensus 96.6 0.0079 1.7E-07 52.2 6.9 63 7-69 366-432 (520)
186 PF04847 Calcipressin: Calcipr 96.5 0.0079 1.7E-07 46.2 5.7 60 184-245 8-69 (184)
187 PF15023 DUF4523: Protein of u 96.4 0.023 5E-07 41.1 7.4 74 167-244 82-159 (166)
188 PF07576 BRAP2: BRCA1-associat 96.2 0.13 2.9E-06 36.0 10.1 76 169-244 11-92 (110)
189 KOG0804|consensus 96.1 0.018 4E-07 49.3 6.2 71 6-76 69-141 (493)
190 KOG2193|consensus 96.0 0.0091 2E-07 50.6 4.2 69 173-244 3-73 (584)
191 PF04847 Calcipressin: Calcipr 96.0 0.024 5.1E-07 43.6 6.1 62 22-86 6-69 (184)
192 KOG4849|consensus 95.9 0.0088 1.9E-07 49.5 3.5 73 11-83 80-157 (498)
193 PF03467 Smg4_UPF3: Smg-4/UPF3 95.5 0.017 3.8E-07 44.1 3.7 65 170-234 6-81 (176)
194 PF03467 Smg4_UPF3: Smg-4/UPF3 95.4 0.015 3.2E-07 44.5 3.0 81 7-87 3-97 (176)
195 PF10309 DUF2414: Protein of u 95.4 0.084 1.8E-06 32.7 5.7 53 12-70 6-62 (62)
196 PF10567 Nab6_mRNP_bdg: RNA-re 95.3 0.97 2.1E-05 37.0 12.9 76 11-86 15-106 (309)
197 KOG2068|consensus 95.0 0.011 2.4E-07 48.8 1.3 76 12-87 78-162 (327)
198 KOG4849|consensus 94.9 0.034 7.5E-07 46.1 3.9 78 168-245 77-161 (498)
199 KOG0804|consensus 94.9 0.22 4.8E-06 42.9 8.6 78 167-244 70-153 (493)
200 KOG2591|consensus 94.8 0.078 1.7E-06 46.7 5.9 67 170-239 174-244 (684)
201 KOG2068|consensus 94.7 0.011 2.4E-07 48.8 0.7 73 171-244 77-160 (327)
202 KOG4285|consensus 94.7 0.059 1.3E-06 43.9 4.7 64 171-238 197-260 (350)
203 PF11767 SET_assoc: Histone ly 94.5 0.19 4.2E-06 31.6 5.7 55 182-241 11-65 (66)
204 PF03880 DbpA: DbpA RNA bindin 94.4 0.068 1.5E-06 34.6 3.7 67 13-85 2-74 (74)
205 PF03880 DbpA: DbpA RNA bindin 94.4 0.36 7.7E-06 31.2 7.1 59 181-244 11-74 (74)
206 KOG2253|consensus 94.2 0.072 1.6E-06 47.9 4.5 72 164-240 33-104 (668)
207 KOG2253|consensus 93.7 0.07 1.5E-06 47.9 3.5 75 4-84 33-107 (668)
208 KOG2135|consensus 93.7 0.046 1E-06 47.2 2.3 60 24-87 386-445 (526)
209 KOG4574|consensus 93.2 0.068 1.5E-06 49.4 2.6 70 15-87 302-373 (1007)
210 KOG4285|consensus 92.7 0.28 6.1E-06 40.1 5.3 64 16-84 202-266 (350)
211 PF11767 SET_assoc: Histone ly 92.3 0.76 1.6E-05 28.9 5.8 55 22-82 11-65 (66)
212 KOG2135|consensus 92.2 0.083 1.8E-06 45.7 1.8 73 170-245 371-444 (526)
213 PF07292 NID: Nmi/IFP 35 domai 92.2 0.24 5.3E-06 33.1 3.7 26 168-193 49-74 (88)
214 KOG2591|consensus 90.9 0.51 1.1E-05 41.9 5.2 68 10-81 173-245 (684)
215 PF14111 DUF4283: Domain of un 87.6 0.87 1.9E-05 33.6 3.9 64 18-87 28-91 (153)
216 KOG2318|consensus 84.9 5.7 0.00012 35.7 7.9 79 8-86 171-306 (650)
217 KOG4483|consensus 84.6 2.1 4.6E-05 36.6 5.0 56 170-227 390-446 (528)
218 PF10567 Nab6_mRNP_bdg: RNA-re 83.2 1.7 3.7E-05 35.6 3.8 74 170-244 14-105 (309)
219 KOG2318|consensus 82.7 7.2 0.00016 35.1 7.6 67 168-234 171-294 (650)
220 KOG4019|consensus 82.1 1.3 2.8E-05 33.7 2.5 73 171-244 10-87 (193)
221 KOG2891|consensus 79.7 0.86 1.9E-05 36.9 1.0 65 168-232 146-246 (445)
222 PRK14548 50S ribosomal protein 74.1 12 0.00025 24.8 5.0 57 14-70 23-81 (84)
223 TIGR03636 L23_arch archaeal ri 72.6 14 0.00031 24.0 5.1 57 14-70 16-74 (77)
224 KOG4410|consensus 72.1 8.1 0.00018 31.6 4.6 49 170-219 329-378 (396)
225 PF03468 XS: XS domain; Inter 69.7 8.6 0.00019 27.2 3.9 45 173-218 10-66 (116)
226 PF02714 DUF221: Domain of unk 66.9 8.6 0.00019 32.3 4.1 43 53-97 1-43 (325)
227 KOG2295|consensus 65.2 1.8 4E-05 38.5 -0.3 65 170-234 230-299 (648)
228 KOG4213|consensus 64.7 14 0.00031 28.1 4.3 53 12-68 112-168 (205)
229 PF03468 XS: XS domain; Inter 63.9 8.5 0.00018 27.2 2.9 40 24-63 30-69 (116)
230 KOG4019|consensus 62.0 10 0.00022 28.9 3.1 72 13-87 12-89 (193)
231 PF09707 Cas_Cas2CT1978: CRISP 62.0 37 0.0008 22.6 5.5 49 10-58 24-72 (86)
232 PF15513 DUF4651: Domain of un 60.8 24 0.00052 21.9 4.0 20 186-205 9-28 (62)
233 KOG2295|consensus 54.9 1.8 3.9E-05 38.5 -2.1 70 7-76 227-299 (648)
234 KOG4410|consensus 54.2 21 0.00045 29.3 3.9 52 9-63 328-380 (396)
235 PRK11558 putative ssRNA endonu 51.2 55 0.0012 22.3 5.0 51 10-60 26-76 (97)
236 KOG4008|consensus 47.0 19 0.0004 28.8 2.5 37 167-203 36-72 (261)
237 KOG4365|consensus 45.1 3.4 7.4E-05 35.8 -1.9 75 12-87 4-81 (572)
238 KOG3424|consensus 44.4 90 0.0019 22.1 5.3 48 17-65 33-84 (132)
239 PF08734 GYD: GYD domain; Int 40.6 1.1E+02 0.0024 20.4 5.9 46 185-230 22-69 (91)
240 PF14893 PNMA: PNMA 40.5 21 0.00045 30.3 2.1 50 168-217 15-71 (331)
241 PF03439 Spt5-NGN: Early trans 38.9 55 0.0012 21.5 3.6 35 197-231 33-67 (84)
242 PRK11901 hypothetical protein; 38.3 1.1E+02 0.0024 25.9 5.8 56 171-230 245-306 (327)
243 COG2813 RsmC 16S RNA G1207 met 36.8 5 0.00011 33.3 -2.1 38 3-41 58-95 (300)
244 PHA01632 hypothetical protein 36.3 36 0.00078 20.4 2.0 20 174-193 19-38 (64)
245 PF15407 Spo7_2_N: Sporulation 35.6 26 0.00055 22.1 1.4 25 9-33 25-49 (67)
246 PF11411 DNA_ligase_IV: DNA li 35.1 31 0.00066 18.8 1.5 17 181-197 19-35 (36)
247 KOG4365|consensus 35.0 5.7 0.00012 34.5 -2.0 73 171-245 3-80 (572)
248 KOG1295|consensus 32.7 58 0.0012 28.0 3.5 64 171-234 7-78 (376)
249 KOG2891|consensus 32.4 49 0.0011 27.1 2.9 22 23-44 173-194 (445)
250 PF11823 DUF3343: Protein of u 30.6 88 0.0019 19.7 3.4 25 51-75 2-26 (73)
251 COG5638 Uncharacterized conser 30.0 2.4E+02 0.0052 24.7 6.7 84 2-85 137-295 (622)
252 PF14893 PNMA: PNMA 29.0 49 0.0011 28.1 2.5 76 9-87 16-96 (331)
253 PTZ00191 60S ribosomal protein 28.4 1.7E+02 0.0038 21.6 4.9 55 14-68 84-140 (145)
254 cd04889 ACT_PDH-BS-like C-term 27.8 1.3E+02 0.0028 17.4 5.3 42 26-67 13-55 (56)
255 KOG4483|consensus 27.5 1.8E+02 0.0038 25.5 5.4 53 12-68 392-445 (528)
256 PF13046 DUF3906: Protein of u 27.4 91 0.002 19.4 2.8 35 21-55 28-63 (64)
257 KOG4357|consensus 27.1 2.4E+02 0.0052 20.2 5.9 61 171-234 66-139 (164)
258 TIGR01873 cas_CT1978 CRISPR-as 26.8 2E+02 0.0043 19.2 5.2 49 10-59 24-74 (87)
259 TIGR02542 B_forsyth_147 Bacter 26.7 51 0.0011 23.2 1.8 56 5-60 59-129 (145)
260 KOG2854|consensus 25.1 1.1E+02 0.0025 25.9 3.9 18 51-68 213-230 (343)
261 PF08156 NOP5NT: NOP5NT (NUC12 24.4 38 0.00083 21.3 0.9 57 7-70 6-64 (67)
262 PF15063 TC1: Thyroid cancer p 23.3 51 0.0011 21.3 1.2 29 170-198 24-52 (79)
263 PF02829 3H: 3H domain; Inter 23.2 2.5E+02 0.0055 19.1 6.6 53 20-72 6-58 (98)
264 COG3588 Fructose-1,6-bisphosph 22.6 1.4E+02 0.003 24.9 3.9 57 180-245 234-291 (332)
265 COG5193 LHP1 La protein, small 22.2 40 0.00088 29.2 0.8 58 11-68 174-244 (438)
266 KOG2187|consensus 21.7 71 0.0015 28.8 2.2 56 187-243 42-97 (534)
267 KOG0156|consensus 20.7 2.2E+02 0.0048 25.7 5.2 59 15-80 36-97 (489)
268 PF08442 ATP-grasp_2: ATP-gras 20.2 2.3E+02 0.0049 22.2 4.6 52 25-76 27-81 (202)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=1.1e-34 Score=242.56 Aligned_cols=163 Identities=20% Similarity=0.382 Sum_probs=145.7
Q ss_pred CCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC---CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEE
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL---KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~ 83 (246)
...++++|||+|||.++++++|+++|+.||+|++|+|+++. +++|||||+|.++++|.+|++.||+..+.+++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 45578999999999999999999999999999999998764 788999999999999999999999999999999999
Q ss_pred EccCCccccccccCccccccccccCCCCCCCChhHHhhhhhhhHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCC
Q psy4057 84 YSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATA 163 (246)
Q Consensus 84 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (246)
++....
T Consensus 183 ~a~p~~-------------------------------------------------------------------------- 188 (346)
T TIGR01659 183 YARPGG-------------------------------------------------------------------------- 188 (346)
T ss_pred cccccc--------------------------------------------------------------------------
Confidence 974321
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCC-CC
Q psy4057 164 GVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITP-TH 237 (246)
Q Consensus 164 ~~~~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~-g~ 237 (246)
.....++|||+|||.++|+++|+++|++||.|+.++++.++ ++||||+|.+.++|.+|++.||+..+.+ ++
T Consensus 189 ---~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~ 265 (346)
T TIGR01659 189 ---ESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQ 265 (346)
T ss_pred ---cccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCce
Confidence 11135679999999999999999999999999999999875 4899999999999999999999999873 37
Q ss_pred ceEEEeecC
Q psy4057 238 AMKISFAKK 246 (246)
Q Consensus 238 ~l~v~~ak~ 246 (246)
+|+|.||+.
T Consensus 266 ~l~V~~a~~ 274 (346)
T TIGR01659 266 PLTVRLAEE 274 (346)
T ss_pred eEEEEECCc
Confidence 899999863
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=1.7e-34 Score=245.54 Aligned_cols=234 Identities=18% Similarity=0.301 Sum_probs=155.0
Q ss_pred CCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC---CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEcc
Q psy4057 10 VTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL---KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSK 86 (246)
Q Consensus 10 ~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~ 86 (246)
+..+|||+|||.++++++|+++|++||+|.+|+++++. +++|||||+|.+.++|.+|++.|||..+.|++|+|.++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 57899999999999999999999999999999998764 789999999999999999999999999999999999986
Q ss_pred CCccccccccCcccccccccc----------------C-CCCCCC-ChhHHhhhhh--hhHHHHHHHHHHHHHHHhcc--
Q psy4057 87 TDSDVISKIKGTFMERPKKVR----------------K-QPAPVE-DPAEAKKSKK--KAAKEQARLMQAQQQQMQAL-- 144 (246)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~----------------~-~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-- 144 (246)
+...... ....++.+....- . ....+. .....+.... ...+.+..++..........
T Consensus 82 ~~~~~~~-~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~ 160 (352)
T TIGR01661 82 PSSDSIK-GANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCT 160 (352)
T ss_pred ccccccc-cceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCc
Confidence 5432111 1111111111000 0 000000 0111111111 12233333332111000000
Q ss_pred -----ccc-CCC------------------------------------C-----------------------------CC
Q psy4057 145 -----SVQ-QPP------------------------------------V-----------------------------SQ 153 (246)
Q Consensus 145 -----~~~-~~~------------------------------------~-----------------------------~~ 153 (246)
.+. .+. . ..
T Consensus 161 ~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (352)
T TIGR01661 161 EPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHA 240 (352)
T ss_pred eeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccc
Confidence 000 000 0 00
Q ss_pred CCCCCCCC-----------CCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCC
Q psy4057 154 PAPPAPMA-----------TAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFEN 217 (246)
Q Consensus 154 ~~~~~~~~-----------~~~~~~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~ 217 (246)
+....+.. .........+.+|||+|||.++++++|+++|++||.|.+++++.++ +|||||+|.+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~ 320 (352)
T TIGR01661 241 AQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTN 320 (352)
T ss_pred cccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECC
Confidence 00000000 0000012234579999999999999999999999999999999976 6999999999
Q ss_pred HHHHHHHHHHhCCCccCCCCceEEEeec
Q psy4057 218 EMQSAAAKLALHGFKITPTHAMKISFAK 245 (246)
Q Consensus 218 ~~~A~~Al~~l~g~~i~~g~~l~v~~ak 245 (246)
.++|..|+..|||+.|+ |+.|+|+|+.
T Consensus 321 ~~~A~~Ai~~lnG~~~~-gr~i~V~~~~ 347 (352)
T TIGR01661 321 YDEAAMAILSLNGYTLG-NRVLQVSFKT 347 (352)
T ss_pred HHHHHHHHHHhCCCEEC-CeEEEEEEcc
Confidence 99999999999999999 9999999963
No 3
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=1.1e-32 Score=242.02 Aligned_cols=170 Identities=18% Similarity=0.247 Sum_probs=144.5
Q ss_pred CCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC---CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEc
Q psy4057 9 CVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL---KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYS 85 (246)
Q Consensus 9 ~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a 85 (246)
...++|||+||++++++++|+++|++||.|.+|.++.+. +++|||||+|.+.++|++|++.|||..+.|++|+|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 456899999999999999999999999999999998764 78999999999999999999999999999999999864
Q ss_pred cCCccccccccCccccccccccCCCCCCCChhHHhhhhhhhHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCC
Q psy4057 86 KTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGV 165 (246)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (246)
....... .... ...
T Consensus 185 ~~~p~a~-----------------------------------------------~~~~-------------------~~~ 198 (612)
T TIGR01645 185 SNMPQAQ-----------------------------------------------PIID-------------------MVQ 198 (612)
T ss_pred ccccccc-----------------------------------------------cccc-------------------ccc
Confidence 2211000 0000 000
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceE
Q psy4057 166 PEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMK 240 (246)
Q Consensus 166 ~~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~ 240 (246)
......++|||+|||.++++++|+++|+.||.|.++++.++. +|||||+|.+.++|..|+..|||+.++ |+.|+
T Consensus 199 ~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elg-Gr~Lr 277 (612)
T TIGR01645 199 EEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLG-GQYLR 277 (612)
T ss_pred ccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeC-CeEEE
Confidence 112246789999999999999999999999999999999864 689999999999999999999999999 99999
Q ss_pred EEeec
Q psy4057 241 ISFAK 245 (246)
Q Consensus 241 v~~ak 245 (246)
|.+|.
T Consensus 278 V~kAi 282 (612)
T TIGR01645 278 VGKCV 282 (612)
T ss_pred EEecC
Confidence 99863
No 4
>KOG0148|consensus
Probab=100.00 E-value=1e-32 Score=213.32 Aligned_cols=173 Identities=23% Similarity=0.392 Sum_probs=150.6
Q ss_pred CcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC---CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEccC
Q psy4057 11 TNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL---KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKT 87 (246)
Q Consensus 11 ~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~~ 87 (246)
+--+||+.|..+++-++|++-|.+||+|.+++++||. ++||||||.|-+.++|++||..|||.=|.+|.|+-.||.+
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 4457889999999999999999999999999999976 8999999999999999999999999999999999999977
Q ss_pred CccccccccCccccccccccCCCCCCCChhHHhhhhhhhHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCCCC
Q psy4057 88 DSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPE 167 (246)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (246)
+........-+|. ... ...
T Consensus 142 Kp~e~n~~~ltfd---------------------------------------eV~----------------------NQs 160 (321)
T KOG0148|consen 142 KPSEMNGKPLTFD---------------------------------------EVY----------------------NQS 160 (321)
T ss_pred CccccCCCCccHH---------------------------------------HHh----------------------ccC
Confidence 7521111000000 000 013
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCCccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEeecC
Q psy4057 168 QPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246 (246)
Q Consensus 168 ~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~ak~ 246 (246)
.+.++++||+|++..+|+++|++.|++||.|.+||+.++. ||+||.|.+.|.|.+||..|||++|+ |..++++|+|+
T Consensus 161 sp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q-GYaFVrF~tkEaAahAIv~mNntei~-G~~VkCsWGKe 237 (321)
T KOG0148|consen 161 SPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ-GYAFVRFETKEAAAHAIVQMNNTEIG-GQLVRCSWGKE 237 (321)
T ss_pred CCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc-ceEEEEecchhhHHHHHHHhcCceeC-ceEEEEecccc
Confidence 5579999999999999999999999999999999999998 89999999999999999999999999 99999999985
No 5
>KOG0117|consensus
Probab=100.00 E-value=1.7e-32 Score=225.26 Aligned_cols=228 Identities=21% Similarity=0.268 Sum_probs=161.7
Q ss_pred CCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccC---CCCccEEEEEEcCHHHHHHHHHHhcCCcc-CCeeEEEE
Q psy4057 8 ICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKT---LKMRGQAFVIFKEIASATNALRSMQGFPF-YDKPMRIQ 83 (246)
Q Consensus 8 ~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~---~~~kg~aFV~f~~~~~A~~Ai~~lng~~~-~g~~l~v~ 83 (246)
.+.++.|||++||.|+.|++|..+|++.|+|.+++++.+ +.+||||||+|++.+.|++|++.||+..| .|+.|.|+
T Consensus 80 p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc 159 (506)
T KOG0117|consen 80 PPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVC 159 (506)
T ss_pred CCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEE
Confidence 467899999999999999999999999999999999987 38999999999999999999999999998 79999999
Q ss_pred EccCCccccccccCcccccccccc---------C-----CCCCCCChhH--HhhhhhhhHHHHHHHHHHHH--HHHhccc
Q psy4057 84 YSKTDSDVISKIKGTFMERPKKVR---------K-----QPAPVEDPAE--AKKSKKKAAKEQARLMQAQQ--QQMQALS 145 (246)
Q Consensus 84 ~a~~~~~~~~~~~~~~~~~~~~~~---------~-----~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 145 (246)
.+..+..... |...++.++.+ . ....+..... .+.-.+.-.+++..++.... +....+-
T Consensus 160 ~Svan~RLFi---G~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klw 236 (506)
T KOG0117|consen 160 VSVANCRLFI---GNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLW 236 (506)
T ss_pred EeeecceeEe---ccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeec
Confidence 9866543222 11111111110 0 0011111111 11112222222222222111 1111122
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCCccEEEEEeCCHHHHHHHH
Q psy4057 146 VQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAK 225 (246)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~Al 225 (246)
..++.+.+.++-..+..+ ....-..|||+||+.++|+|.|+.+|++||.|.+|+.++| ||||.|.++++|.+||
T Consensus 237 gn~~tVdWAep~~e~ded---~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD---YaFVHf~eR~davkAm 310 (506)
T KOG0117|consen 237 GNAITVDWAEPEEEPDED---TMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD---YAFVHFAEREDAVKAM 310 (506)
T ss_pred CCcceeeccCcccCCChh---hhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc---eeEEeecchHHHHHHH
Confidence 233334444432222112 2234789999999999999999999999999999999866 9999999999999999
Q ss_pred HHhCCCccCCCCceEEEeec
Q psy4057 226 LALHGFKITPTHAMKISFAK 245 (246)
Q Consensus 226 ~~l~g~~i~~g~~l~v~~ak 245 (246)
+.|||++|+ |..|.|.+||
T Consensus 311 ~~~ngkeld-G~~iEvtLAK 329 (506)
T KOG0117|consen 311 KETNGKELD-GSPIEVTLAK 329 (506)
T ss_pred HHhcCceec-CceEEEEecC
Confidence 999999999 9999999998
No 6
>KOG4206|consensus
Probab=99.98 E-value=3.8e-31 Score=200.86 Aligned_cols=214 Identities=50% Similarity=0.794 Sum_probs=174.4
Q ss_pred ccCCCCCcEEEecCCChhhhHHHHHH----HhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeE
Q psy4057 5 LAHICVTNFVYVTHISSTDLKKSLYA----IFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPM 80 (246)
Q Consensus 5 ~~~~~~~~~l~V~nl~~~~~e~~l~~----~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l 80 (246)
+....|+.||||.||++....++|+. +|++||.|.+|...++.+.+|.|||.|.+.+.|..|+..|+|..+.|++|
T Consensus 3 ~~~~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~m 82 (221)
T KOG4206|consen 3 PMSVNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPM 82 (221)
T ss_pred ccccCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchh
Confidence 45678888999998888777777666 99999999999999999999999999999999999999999999999999
Q ss_pred EEEEccCCccccccccCccccccccccC-CCCCCCChhHHhhhhhhhHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCC
Q psy4057 81 RIQYSKTDSDVISKIKGTFMERPKKVRK-QPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAP 159 (246)
Q Consensus 81 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (246)
+|+||+.+++++.+..++++++.++... +........ ..++.....+. ...++
T Consensus 83 riqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~----------------------~~ng~~~~~~~--~~~p~-- 136 (221)
T KOG4206|consen 83 RIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPL----------------------DTNGHFYNMNR--MNLPP-- 136 (221)
T ss_pred heecccCccchhhccCceeccccCccccccccccCCcc----------------------ccccccccccc--ccCCC--
Confidence 9999999999999988888877766544 222111000 00000000000 00000
Q ss_pred CCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCCccEEEEEeCCHHHHHHHHHHhCCCccCCCCce
Q psy4057 160 MATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAM 239 (246)
Q Consensus 160 ~~~~~~~~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l 239 (246)
+. .....+++.+||+.|||.+++.+.|..+|++|+..+.++++...++.|||+|.+...|..|.+.|+|..|-....|
T Consensus 137 -p~-~~~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m 214 (221)
T KOG4206|consen 137 -PF-LAQMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPRSGIAFVEFLSDRQASAAQQALQGFKITKKNTM 214 (221)
T ss_pred -Cc-cccCCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCCCceeEEecchhhhhHHHhhhhccceeccCceE
Confidence 00 1345778999999999999999999999999999999999999999999999999999999999999999878999
Q ss_pred EEEeecC
Q psy4057 240 KISFAKK 246 (246)
Q Consensus 240 ~v~~ak~ 246 (246)
+|.||+|
T Consensus 215 ~i~~a~K 221 (221)
T KOG4206|consen 215 QITFAKK 221 (221)
T ss_pred EecccCC
Confidence 9999986
No 7
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.97 E-value=1.7e-30 Score=228.37 Aligned_cols=195 Identities=20% Similarity=0.311 Sum_probs=147.8
Q ss_pred CCCCcEEEecCCCh-hhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEcc
Q psy4057 8 ICVTNFVYVTHISS-TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSK 86 (246)
Q Consensus 8 ~~~~~~l~V~nl~~-~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~ 86 (246)
.+++.+|||+||+. .+++++|+++|+.||.|.+|+++++ .+|+|||+|.+.++|..|++.|||..+.|++|+|.+++
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~--~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~ 349 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN--KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSK 349 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 45789999999997 6999999999999999999999886 47999999999999999999999999999999999986
Q ss_pred CCccccccccCccccccccccCCCCCCCChhHHhhhhhhhHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCCC
Q psy4057 87 TDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVP 166 (246)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (246)
......... +...+.. ....+.... ....+ ..+ .......
T Consensus 350 ~~~~~~~~~-~~~~~~~-----~~~~d~~~~----------------------~~~r~----------~~~--~~~~~~~ 389 (481)
T TIGR01649 350 QQNVQPPRE-GQLDDGL-----TSYKDYSSS----------------------RNHRF----------KKP--GSANKNN 389 (481)
T ss_pred cccccCCCC-CcCcCCC-----cccccccCC----------------------ccccC----------CCc--ccccccc
Confidence 553211100 0000000 000000000 00000 000 0000112
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHccCCC--ceEEEEeeCC---ccEEEEEeCCHHHHHHHHHHhCCCccCCCC----
Q psy4057 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPG--FKEVRLVPNR---HDIAFVEFENEMQSAAAKLALHGFKITPTH---- 237 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~--i~~v~~~~~~---~g~afV~f~~~~~A~~Al~~l~g~~i~~g~---- 237 (246)
..+++.+|||+|||.++++++|+++|+.||. |..+++.++. +++|||+|.+.++|..|+..|||+.|. ++
T Consensus 390 ~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~-~~~~~~ 468 (481)
T TIGR01649 390 IQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKDNERSKMGLLEWESVEDAVEALIALNHHQLN-EPNGSA 468 (481)
T ss_pred cCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecCCCCcceeEEEEcCCHHHHHHHHHHhcCCccC-CCCCCc
Confidence 3568999999999999999999999999998 8889887754 689999999999999999999999999 65
Q ss_pred --ceEEEeec
Q psy4057 238 --AMKISFAK 245 (246)
Q Consensus 238 --~l~v~~ak 245 (246)
.|+|+|||
T Consensus 469 ~~~lkv~fs~ 478 (481)
T TIGR01649 469 PYHLKVSFST 478 (481)
T ss_pred cceEEEEecc
Confidence 59999997
No 8
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.97 E-value=8.3e-31 Score=230.12 Aligned_cols=171 Identities=22% Similarity=0.428 Sum_probs=145.5
Q ss_pred CCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC---CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEE
Q psy4057 8 ICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL---KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQY 84 (246)
Q Consensus 8 ~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 84 (246)
..+.++|||+|||..+++++|+++|++||.|.+|.++.+. +++|||||+|.+.++|.+|+. |+|..+.|++|.|.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 3467899999999999999999999999999999998764 789999999999999999997 999999999999998
Q ss_pred ccCCccccccccCccccccccccCCCCCCCChhHHhhhhhhhHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCCC
Q psy4057 85 SKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAG 164 (246)
Q Consensus 85 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (246)
+........ .... ..
T Consensus 165 ~~~~~~~~~----------------------------------------------~~~~-------------------~~ 179 (457)
T TIGR01622 165 SQAEKNRAA----------------------------------------------KAAT-------------------HQ 179 (457)
T ss_pred cchhhhhhh----------------------------------------------hccc-------------------cc
Confidence 643321000 0000 00
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCce
Q psy4057 165 VPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHAM 239 (246)
Q Consensus 165 ~~~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l 239 (246)
....+..++|||+|||..+|+++|+++|+.||.|..|.++.+. +|||||+|.+.++|..|+..|||..|. |++|
T Consensus 180 ~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~-g~~i 258 (457)
T TIGR01622 180 PGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELA-GRPI 258 (457)
T ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEEC-CEEE
Confidence 0112347899999999999999999999999999999999754 489999999999999999999999999 9999
Q ss_pred EEEeec
Q psy4057 240 KISFAK 245 (246)
Q Consensus 240 ~v~~ak 245 (246)
+|.||+
T Consensus 259 ~v~~a~ 264 (457)
T TIGR01622 259 KVGYAQ 264 (457)
T ss_pred EEEEcc
Confidence 999975
No 9
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.97 E-value=2.2e-30 Score=227.70 Aligned_cols=168 Identities=20% Similarity=0.212 Sum_probs=140.6
Q ss_pred CCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHh--cCCccCCeeEEEEEccC
Q psy4057 10 VTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSM--QGFPFYDKPMRIQYSKT 87 (246)
Q Consensus 10 ~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~l--ng~~~~g~~l~v~~a~~ 87 (246)
|+++|||+|||.++++++|+++|++||.|.+|.+++ +++||||+|.+.++|++|+..+ ++..+.|++|+|.|+..
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~---~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~ 77 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP---GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTS 77 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC---CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCC
Confidence 789999999999999999999999999999998876 5799999999999999999974 78999999999999854
Q ss_pred CccccccccCccccccccccCCCCCCCChhHHhhhhhhhHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCCCC
Q psy4057 88 DSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPE 167 (246)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (246)
+.... ... ... ....
T Consensus 78 ~~~~~--~~~--------------------------------------------~~~-------------------~~~~ 92 (481)
T TIGR01649 78 QEIKR--DGN--------------------------------------------SDF-------------------DSAG 92 (481)
T ss_pred ccccc--CCC--------------------------------------------Ccc-------------------cCCC
Confidence 42100 000 000 0001
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCCc-cEEEEEeCCHHHHHHHHHHhCCCccCCC-CceEEEeec
Q psy4057 168 QPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRH-DIAFVEFENEMQSAAAKLALHGFKITPT-HAMKISFAK 245 (246)
Q Consensus 168 ~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~~-g~afV~f~~~~~A~~Al~~l~g~~i~~g-~~l~v~~ak 245 (246)
.....+|+|+||+..+|+++|+++|+.||.|.+|.+.+++. ++|||+|.+.++|.+|++.|||..|.+| ++|+|.|||
T Consensus 93 ~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk 172 (481)
T TIGR01649 93 PNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNNVFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAK 172 (481)
T ss_pred CCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCCceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEec
Confidence 11245789999999999999999999999999999988763 6999999999999999999999999743 689999987
No 10
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.97 E-value=2.9e-30 Score=226.53 Aligned_cols=221 Identities=18% Similarity=0.253 Sum_probs=150.5
Q ss_pred CcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC--CCccEEEEEEcCHHHHHHHHHHhcCCccC-CeeEEEEEccC
Q psy4057 11 TNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL--KMRGQAFVIFKEIASATNALRSMQGFPFY-DKPMRIQYSKT 87 (246)
Q Consensus 11 ~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~--~~kg~aFV~f~~~~~A~~Ai~~lng~~~~-g~~l~v~~a~~ 87 (246)
.++|||+|||.+++|++|+++|++||.|.++++++|. +++|||||+|.+.++|++|++.||+..+. |+.|.|..+..
T Consensus 58 ~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~~ 137 (578)
T TIGR01648 58 GCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISVD 137 (578)
T ss_pred CCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccccc
Confidence 5899999999999999999999999999999998764 78999999999999999999999999884 78888877654
Q ss_pred CccccccccCccccccccccC-------------CCCCCCChhHHhhhhh--hhHHHHHHHHHHHHHHHh---c----cc
Q psy4057 88 DSDVISKIKGTFMERPKKVRK-------------QPAPVEDPAEAKKSKK--KAAKEQARLMQAQQQQMQ---A----LS 145 (246)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~---~----~~ 145 (246)
.................-.+. ...............+ ....++..+......... + ..
T Consensus 138 ~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~Vd 217 (578)
T TIGR01648 138 NCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVD 217 (578)
T ss_pred CceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEE
Confidence 332222111100000000000 0000000111111111 122333333321110000 0 01
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHccC--CCceEEEEeeCCccEEEEEeCCHHHHHH
Q psy4057 146 VQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQF--PGFKEVRLVPNRHDIAFVEFENEMQSAA 223 (246)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~t~e~l~~~f~~~--G~i~~v~~~~~~~g~afV~f~~~~~A~~ 223 (246)
|..|... .........++|||+|||.++++++|+++|+.| |.|++|.+++ +||||+|.+.++|.+
T Consensus 218 wA~p~~~----------~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r---gfAFVeF~s~e~A~k 284 (578)
T TIGR01648 218 WAEPEEE----------VDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR---DYAFVHFEDREDAVK 284 (578)
T ss_pred eeccccc----------ccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec---CeEEEEeCCHHHHHH
Confidence 1111100 011122346899999999999999999999999 9999998874 599999999999999
Q ss_pred HHHHhCCCccCCCCceEEEeec
Q psy4057 224 AKLALHGFKITPTHAMKISFAK 245 (246)
Q Consensus 224 Al~~l~g~~i~~g~~l~v~~ak 245 (246)
|++.|||+.|+ |+.|+|+||+
T Consensus 285 Ai~~lnG~~i~-Gr~I~V~~Ak 305 (578)
T TIGR01648 285 AMDELNGKELE-GSEIEVTLAK 305 (578)
T ss_pred HHHHhCCCEEC-CEEEEEEEcc
Confidence 99999999999 9999999996
No 11
>KOG0131|consensus
Probab=99.97 E-value=3e-30 Score=188.93 Aligned_cols=163 Identities=21% Similarity=0.347 Sum_probs=143.7
Q ss_pred CCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC---CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEE
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL---KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~ 83 (246)
+.....+|||+||+..++++.|+++|-+.|+|.++.+.++. ..+||||++|.++++|+.|+.-||...+.|++|+|.
T Consensus 5 ~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ 84 (203)
T KOG0131|consen 5 ERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVN 84 (203)
T ss_pred ccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEE
Confidence 34557899999999999999999999999999999999987 578999999999999999999999999999999999
Q ss_pred EccCCccccccccCccccccccccCCCCCCCChhHHhhhhhhhHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCC
Q psy4057 84 YSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATA 163 (246)
Q Consensus 84 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (246)
.+....
T Consensus 85 kas~~~-------------------------------------------------------------------------- 90 (203)
T KOG0131|consen 85 KASAHQ-------------------------------------------------------------------------- 90 (203)
T ss_pred eccccc--------------------------------------------------------------------------
Confidence 874211
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceE-EEEeeC-----CccEEEEEeCCHHHHHHHHHHhCCCccCCCC
Q psy4057 164 GVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKE-VRLVPN-----RHDIAFVEFENEMQSAAAKLALHGFKITPTH 237 (246)
Q Consensus 164 ~~~~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~-v~~~~~-----~~g~afV~f~~~~~A~~Al~~l~g~~i~~g~ 237 (246)
.....+..|||+||.+++++..|.+.|+.||.+.. -.++++ .+|||||.|.+.+.+.+|+.+|||..++ ++
T Consensus 91 --~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~-nr 167 (203)
T KOG0131|consen 91 --KNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLC-NR 167 (203)
T ss_pred --ccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhc-CC
Confidence 12334688999999999999999999999999944 334443 2579999999999999999999999999 99
Q ss_pred ceEEEeecC
Q psy4057 238 AMKISFAKK 246 (246)
Q Consensus 238 ~l~v~~ak~ 246 (246)
++.|+||+|
T Consensus 168 ~itv~ya~k 176 (203)
T KOG0131|consen 168 PITVSYAFK 176 (203)
T ss_pred ceEEEEEEe
Confidence 999999986
No 12
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.97 E-value=1.1e-29 Score=227.97 Aligned_cols=157 Identities=22% Similarity=0.384 Sum_probs=140.3
Q ss_pred cEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC---CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEccCC
Q psy4057 12 NFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL---KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTD 88 (246)
Q Consensus 12 ~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~~~ 88 (246)
.+|||+|||.+++|++|+++|++||.|.+|+++++. +++|||||+|.+.++|.+|++.+|+..+.|++|+|.|+..+
T Consensus 1 ~sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~ 80 (562)
T TIGR01628 1 ASLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRD 80 (562)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccccc
Confidence 379999999999999999999999999999999875 67899999999999999999999999999999999997533
Q ss_pred ccccccccCccccccccccCCCCCCCChhHHhhhhhhhHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCCCCC
Q psy4057 89 SDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQ 168 (246)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (246)
... ..
T Consensus 81 ~~~---------------------------------------------------------------------------~~ 85 (562)
T TIGR01628 81 PSL---------------------------------------------------------------------------RR 85 (562)
T ss_pred ccc---------------------------------------------------------------------------cc
Confidence 210 01
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEee
Q psy4057 169 PPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFA 244 (246)
Q Consensus 169 ~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~a 244 (246)
....+|||+|||.++++++|+++|+.||.|..++++.+. +|||||+|.+.++|..|++.|||..+. |+.|.|...
T Consensus 86 ~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~-~~~i~v~~~ 164 (562)
T TIGR01628 86 SGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLN-DKEVYVGRF 164 (562)
T ss_pred cCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEec-CceEEEecc
Confidence 124579999999999999999999999999999998864 589999999999999999999999999 899988654
No 13
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.96 E-value=5.7e-29 Score=223.43 Aligned_cols=178 Identities=20% Similarity=0.353 Sum_probs=146.6
Q ss_pred CCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC--CCccEEEEEEcCHHHHHHHHHHhcCCccC----CeeEEE
Q psy4057 9 CVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL--KMRGQAFVIFKEIASATNALRSMQGFPFY----DKPMRI 82 (246)
Q Consensus 9 ~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~--~~kg~aFV~f~~~~~A~~Ai~~lng~~~~----g~~l~v 82 (246)
...++|||+||+.++++++|+++|+.||.|.++.++++. +++|||||.|.+.++|.+|++.|||..+. |+.+.|
T Consensus 176 ~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v 255 (562)
T TIGR01628 176 KKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYV 255 (562)
T ss_pred cCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEe
Confidence 445789999999999999999999999999999998765 67899999999999999999999999999 999999
Q ss_pred EEccCCccccccccCccccccccccCCCCCCCChhHHhhhhhhhHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCC
Q psy4057 83 QYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMAT 162 (246)
Q Consensus 83 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (246)
.++..+........ . ......
T Consensus 256 ~~a~~k~er~~~~~-----------------------------------~-------~~~~~~----------------- 276 (562)
T TIGR01628 256 GRAQKRAEREAELR-----------------------------------R-------KFEELQ----------------- 276 (562)
T ss_pred ecccChhhhHHHHH-----------------------------------h-------hHHhhh-----------------
Confidence 88754421100000 0 000000
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCc
Q psy4057 163 AGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR----HDIAFVEFENEMQSAAAKLALHGFKITPTHA 238 (246)
Q Consensus 163 ~~~~~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~ 238 (246)
..........+|||+||+..+|+++|+++|+.||.|.+++++.+. +|||||+|.+.++|.+|+..|||+.++ |++
T Consensus 277 ~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~-gk~ 355 (562)
T TIGR01628 277 QERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLG-GKP 355 (562)
T ss_pred hhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeC-Cce
Confidence 000012347789999999999999999999999999999999875 589999999999999999999999999 999
Q ss_pred eEEEeecC
Q psy4057 239 MKISFAKK 246 (246)
Q Consensus 239 l~v~~ak~ 246 (246)
|.|.||++
T Consensus 356 l~V~~a~~ 363 (562)
T TIGR01628 356 LYVALAQR 363 (562)
T ss_pred eEEEeccC
Confidence 99999864
No 14
>KOG0144|consensus
Probab=99.96 E-value=7.6e-29 Score=203.00 Aligned_cols=158 Identities=21% Similarity=0.413 Sum_probs=139.2
Q ss_pred CcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC---CCccEEEEEEcCHHHHHHHHHHhcC-CccC--CeeEEEEE
Q psy4057 11 TNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL---KMRGQAFVIFKEIASATNALRSMQG-FPFY--DKPMRIQY 84 (246)
Q Consensus 11 ~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng-~~~~--g~~l~v~~ 84 (246)
.-++||+-||..++|.||+++|++||.|.+|.+++|+ .++|||||.|.+.++|.+|+..|++ .++. .++|.|.|
T Consensus 34 ~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~ 113 (510)
T KOG0144|consen 34 AVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKY 113 (510)
T ss_pred hhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecc
Confidence 4579999999999999999999999999999999987 7889999999999999999999987 4454 47788999
Q ss_pred ccCCccccccccCccccccccccCCCCCCCChhHHhhhhhhhHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCCC
Q psy4057 85 SKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAG 164 (246)
Q Consensus 85 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (246)
++....
T Consensus 114 Ad~E~e-------------------------------------------------------------------------- 119 (510)
T KOG0144|consen 114 ADGERE-------------------------------------------------------------------------- 119 (510)
T ss_pred cchhhh--------------------------------------------------------------------------
Confidence 854421
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC----ccEEEEEeCCHHHHHHHHHHhCCCc-cC-CCCc
Q psy4057 165 VPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR----HDIAFVEFENEMQSAAAKLALHGFK-IT-PTHA 238 (246)
Q Consensus 165 ~~~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g~~-i~-~g~~ 238 (246)
.-+..+.|||+-|+..+|+.+++++|++||.|+++++++|. +|||||.|.+.+.|..|++.|||.. +. ...+
T Consensus 120 --r~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~P 197 (510)
T KOG0144|consen 120 --RIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQP 197 (510)
T ss_pred --ccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCc
Confidence 11357889999999999999999999999999999999976 7999999999999999999999964 44 2478
Q ss_pred eEEEee
Q psy4057 239 MKISFA 244 (246)
Q Consensus 239 l~v~~a 244 (246)
|.|.||
T Consensus 198 LVVkFA 203 (510)
T KOG0144|consen 198 LVVKFA 203 (510)
T ss_pred eEEEec
Confidence 999997
No 15
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.96 E-value=1.4e-27 Score=212.47 Aligned_cols=186 Identities=14% Similarity=0.177 Sum_probs=141.2
Q ss_pred CCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccC---CCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEc
Q psy4057 9 CVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKT---LKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYS 85 (246)
Q Consensus 9 ~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~---~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a 85 (246)
.+.++|||+|||..+++++|+++|+.||.|..+.++++ +.++|||||+|.+.++|..|++.|||..+.|+.|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 34689999999999999999999999999999998875 478999999999999999999999999999999999998
Q ss_pred cCCccccccccCccccccccccCCCCCCCChhHHhhhhhhhHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCC
Q psy4057 86 KTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGV 165 (246)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (246)
............ . . ... .... + +..+.....
T Consensus 373 ~~~~~~~~~~~~-----------~--~--------~~~-----------------~~~~----~-------~~~~~~~~~ 403 (509)
T TIGR01642 373 CVGANQATIDTS-----------N--G--------MAP-----------------VTLL----A-------KALSQSILQ 403 (509)
T ss_pred ccCCCCCCcccc-----------c--c--------ccc-----------------cccc----c-------ccchhhhcc
Confidence 543210000000 0 0 000 0000 0 000000001
Q ss_pred CCCCCCcEEEEcCCCCC--C--------CHHHHHHHHccCCCceEEEEeeCC--------ccEEEEEeCCHHHHHHHHHH
Q psy4057 166 PEQPPNQILFLTNLPEE--T--------SEMMLSMLFNQFPGFKEVRLVPNR--------HDIAFVEFENEMQSAAAKLA 227 (246)
Q Consensus 166 ~~~~~~~~l~v~nL~~~--~--------t~e~l~~~f~~~G~i~~v~~~~~~--------~g~afV~f~~~~~A~~Al~~ 227 (246)
....++.+|+|.||... + ..++|+++|+.||.|++|.|+... .|+|||+|.+.++|+.|+..
T Consensus 404 ~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~ 483 (509)
T TIGR01642 404 IGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEG 483 (509)
T ss_pred ccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHH
Confidence 13457899999999642 1 236899999999999999998742 37899999999999999999
Q ss_pred hCCCccCCCCceEEEee
Q psy4057 228 LHGFKITPTHAMKISFA 244 (246)
Q Consensus 228 l~g~~i~~g~~l~v~~a 244 (246)
|||..|. |+.|.|.|.
T Consensus 484 lnGr~~~-gr~v~~~~~ 499 (509)
T TIGR01642 484 MNGRKFN-DRVVVAAFY 499 (509)
T ss_pred cCCCEEC-CeEEEEEEe
Confidence 9999999 999999985
No 16
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.96 E-value=6.1e-27 Score=205.68 Aligned_cols=230 Identities=18% Similarity=0.248 Sum_probs=145.9
Q ss_pred CCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC---CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEc
Q psy4057 9 CVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL---KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYS 85 (246)
Q Consensus 9 ~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a 85 (246)
+.+++|||+|||..+++++|+++|++||.|..|.++++. +++|||||+|.+.++|..|++.|||..+.|++|.|.++
T Consensus 184 p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a 263 (457)
T TIGR01622 184 PNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYA 263 (457)
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEc
Confidence 447899999999999999999999999999999998764 67899999999999999999999999999999999997
Q ss_pred cCCccccccccCccccccccccC--CCCCCCChhHHhh---------hhhhhHHHHHHHHHHHHHHHhcc---cccCCCC
Q psy4057 86 KTDSDVISKIKGTFMERPKKVRK--QPAPVEDPAEAKK---------SKKKAAKEQARLMQAQQQQMQAL---SVQQPPV 151 (246)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 151 (246)
......... ...+......... ............. ............+. ..... ....|..
T Consensus 264 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 338 (457)
T TIGR01622 264 QDSTYLLDA-ANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQ----KLQRDGIIDPNIPSR 338 (457)
T ss_pred cCCCccccc-hhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhc----ccccccccccccccc
Confidence 632211110 0000000000000 0000000000000 00000000000000 00000 0000000
Q ss_pred CCCC-CCCCC---CCCCCCCCCCCcEEEEcCCCCCCC----------HHHHHHHHccCCCceEEEEee-CCccEEEEEeC
Q psy4057 152 SQPA-PPAPM---ATAGVPEQPPNQILFLTNLPEETS----------EMMLSMLFNQFPGFKEVRLVP-NRHDIAFVEFE 216 (246)
Q Consensus 152 ~~~~-~~~~~---~~~~~~~~~~~~~l~v~nL~~~~t----------~e~l~~~f~~~G~i~~v~~~~-~~~g~afV~f~ 216 (246)
.... .+... .........++.+|+|.||....+ .++|++.|++||.|+.|.+.. ...|++||+|.
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~~~~G~~fV~F~ 418 (457)
T TIGR01622 339 YATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTKNSAGKIYLKFS 418 (457)
T ss_pred ccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCCCCceeEEEEEC
Confidence 0000 00000 001111345789999999955444 368999999999999999984 44699999999
Q ss_pred CHHHHHHHHHHhCCCccCCCCceEEEee
Q psy4057 217 NEMQSAAAKLALHGFKITPTHAMKISFA 244 (246)
Q Consensus 217 ~~~~A~~Al~~l~g~~i~~g~~l~v~~a 244 (246)
+.++|.+|++.|||+.|+ |+.|.+.|.
T Consensus 419 ~~e~A~~A~~~lnGr~f~-gr~i~~~~~ 445 (457)
T TIGR01622 419 SVDAALAAFQALNGRYFG-GKMITAAFV 445 (457)
T ss_pred CHHHHHHHHHHhcCcccC-CeEEEEEEE
Confidence 999999999999999999 999999986
No 17
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.95 E-value=3.1e-27 Score=210.16 Aligned_cols=184 Identities=17% Similarity=0.244 Sum_probs=135.8
Q ss_pred CCCcEEEecCCChhhhHHHHHHHhhcc------------CCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccC
Q psy4057 9 CVTNFVYVTHISSTDLKKSLYAIFSQF------------GQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFY 76 (246)
Q Consensus 9 ~~~~~l~V~nl~~~~~e~~l~~~F~~f------------G~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~ 76 (246)
...++|||+|||.++++++|.++|..+ +.|..+.+ .+.+|||||+|.+.++|..|+. |||..|.
T Consensus 173 ~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~---~~~kg~afVeF~~~e~A~~Al~-l~g~~~~ 248 (509)
T TIGR01642 173 RQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI---NKEKNFAFLEFRTVEEATFAMA-LDSIIYS 248 (509)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE---CCCCCEEEEEeCCHHHHhhhhc-CCCeEee
Confidence 457899999999999999999999975 33444443 3578999999999999999995 9999999
Q ss_pred CeeEEEEEccCCccccccccCccccccccccCCCCCCCChhHHhhhhhhhHHHHHHHHHHHHHHHhcccccCCCCCCCCC
Q psy4057 77 DKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAP 156 (246)
Q Consensus 77 g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (246)
|++|+|......... .... .......+.......
T Consensus 249 g~~l~v~r~~~~~~~---~~~~-------------------------------------------~~~~~~~~~~~~~~~ 282 (509)
T TIGR01642 249 NVFLKIRRPHDYIPV---PQIT-------------------------------------------PEVSQKNPDDNAKNV 282 (509)
T ss_pred CceeEecCccccCCc---cccC-------------------------------------------CCCCCCCCccccccc
Confidence 999999764321100 0000 000000000000000
Q ss_pred CCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCC
Q psy4057 157 PAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGF 231 (246)
Q Consensus 157 ~~~~~~~~~~~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~ 231 (246)
.............++|||+|||..+|+++|+++|+.||.|..+.++.+. +|||||+|.+.++|..|+..|||.
T Consensus 283 --~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~ 360 (509)
T TIGR01642 283 --EKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGK 360 (509)
T ss_pred --ccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCC
Confidence 0000001112356899999999999999999999999999999998863 689999999999999999999999
Q ss_pred ccCCCCceEEEeec
Q psy4057 232 KITPTHAMKISFAK 245 (246)
Q Consensus 232 ~i~~g~~l~v~~ak 245 (246)
.|+ |+.|.|.+|.
T Consensus 361 ~~~-~~~l~v~~a~ 373 (509)
T TIGR01642 361 DTG-DNKLHVQRAC 373 (509)
T ss_pred EEC-CeEEEEEECc
Confidence 999 9999999974
No 18
>KOG0145|consensus
Probab=99.95 E-value=2.3e-27 Score=182.88 Aligned_cols=159 Identities=19% Similarity=0.417 Sum_probs=143.3
Q ss_pred CCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC---CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEcc
Q psy4057 10 VTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL---KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSK 86 (246)
Q Consensus 10 ~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~ 86 (246)
+...|.|--||..+++++|+.+|+..|+|++|+++||+ ++-||+||-|.++++|.+|+..|||..+..++|+|.|++
T Consensus 40 skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyAR 119 (360)
T KOG0145|consen 40 SKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYAR 119 (360)
T ss_pred ccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEecc
Confidence 34567888999999999999999999999999999987 777999999999999999999999999999999999986
Q ss_pred CCccccccccCccccccccccCCCCCCCChhHHhhhhhhhHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCCC
Q psy4057 87 TDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVP 166 (246)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (246)
+-++
T Consensus 120 PSs~---------------------------------------------------------------------------- 123 (360)
T KOG0145|consen 120 PSSD---------------------------------------------------------------------------- 123 (360)
T ss_pred CChh----------------------------------------------------------------------------
Confidence 5542
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCC-CCceE
Q psy4057 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITP-THAMK 240 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~-g~~l~ 240 (246)
......|||.+||..+|+.+|.++|++||.|..-+++.|. +|.|||.|+.+++|..|+..|||.+-.+ ..+|.
T Consensus 124 -~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepIt 202 (360)
T KOG0145|consen 124 -SIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPIT 202 (360)
T ss_pred -hhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeE
Confidence 2247789999999999999999999999999888888776 6899999999999999999999987752 47899
Q ss_pred EEeec
Q psy4057 241 ISFAK 245 (246)
Q Consensus 241 v~~ak 245 (246)
|.||.
T Consensus 203 VKFan 207 (360)
T KOG0145|consen 203 VKFAN 207 (360)
T ss_pred EEecC
Confidence 99985
No 19
>KOG0127|consensus
Probab=99.95 E-value=3.5e-27 Score=198.29 Aligned_cols=181 Identities=21% Similarity=0.303 Sum_probs=146.7
Q ss_pred cEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC---CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEccCC
Q psy4057 12 NFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL---KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTD 88 (246)
Q Consensus 12 ~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~~~ 88 (246)
.||||++||++.+-++|.++|+.+|+|..+.+..++ .++|||||+|+-.++++.|+...++..|.|+.|+|.++..+
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 899999999999999999999999999999998865 67899999999999999999999999999999999998655
Q ss_pred ccccccccCccccccccccCCCCCCCChhHHhhhhhhhHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCCCCC
Q psy4057 89 SDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQ 168 (246)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (246)
........+ ..... ...+.+. ......-.
T Consensus 86 ~r~e~~~~~----------------e~~~v----------------------eK~~~q~-------------~~~k~~v~ 114 (678)
T KOG0127|consen 86 ARSEEVEKG----------------ENKAV----------------------EKPIEQK-------------RPTKAKVD 114 (678)
T ss_pred ccchhcccc----------------cchhh----------------------hcccccC-------------Ccchhhcc
Confidence 321100000 00000 0000000 00011123
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEee
Q psy4057 169 PPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFA 244 (246)
Q Consensus 169 ~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~a 244 (246)
.+...|+|+|||+.|...+|+.+|+.||.|..|.|++.. .|||||.|.+..+|..|++.|||..|+ |++|.|.||
T Consensus 115 ~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~-gR~VAVDWA 193 (678)
T KOG0127|consen 115 LPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKID-GRPVAVDWA 193 (678)
T ss_pred CccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceec-CceeEEeee
Confidence 347899999999999999999999999999999999855 589999999999999999999999999 999999997
No 20
>KOG0127|consensus
Probab=99.94 E-value=3.8e-26 Score=192.08 Aligned_cols=227 Identities=21% Similarity=0.292 Sum_probs=146.5
Q ss_pred CcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC--CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEccCC
Q psy4057 11 TNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL--KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTD 88 (246)
Q Consensus 11 ~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~--~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~~~ 88 (246)
.-+|.|.|||..+.+.+|..+|+.||.|.+|.|++.+ +..|||||+|.+..+|.+|++.+||..|.||+|.|.||-.+
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~K 196 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDK 196 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccc
Confidence 5689999999999999999999999999999999644 77799999999999999999999999999999999998655
Q ss_pred ccccccccCccccccccccC----CC-CCCCC-------hhHHh------hhhhhhHHHHHHHHHHHHHHHhcc-cccCC
Q psy4057 89 SDVISKIKGTFMERPKKVRK----QP-APVED-------PAEAK------KSKKKAAKEQARLMQAQQQQMQAL-SVQQP 149 (246)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~----~~-~~~~~-------~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 149 (246)
......... ..+..+.... ++ ..+.. ..... .+............. ..... ....+
T Consensus 197 d~ye~ta~~-~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Ee----e~~~vDd~e~S 271 (678)
T KOG0127|consen 197 DTYEDTAHE-EKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEE----EEDDVDDEESS 271 (678)
T ss_pred ccccccchh-hhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccc----ccccccccccc
Confidence 321110000 0000000000 00 00000 00000 000000000000000 00000 00000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHH
Q psy4057 150 PVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAA 224 (246)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A 224 (246)
..+.+.+.... ...........+|||+|||+++|+++|..+|++||+|..+.++.++ .|+|||.|.+...|+.|
T Consensus 272 ~~~~~~k~~q~-k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~c 350 (678)
T KOG0127|consen 272 GKKESDKKAQN-KTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNC 350 (678)
T ss_pred ccCcccchhcc-ccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHH
Confidence 00011100000 0012233456999999999999999999999999999999999976 58999999999999999
Q ss_pred HHHh-----CC-CccCCCCceEEEee
Q psy4057 225 KLAL-----HG-FKITPTHAMKISFA 244 (246)
Q Consensus 225 l~~l-----~g-~~i~~g~~l~v~~a 244 (246)
|..- .| ..++ |+-|+|..|
T Consensus 351 i~~Aspa~e~g~~ll~-GR~Lkv~~A 375 (678)
T KOG0127|consen 351 IEAASPASEDGSVLLD-GRLLKVTLA 375 (678)
T ss_pred HHhcCccCCCceEEEe-ccEEeeeec
Confidence 9987 33 4566 899998765
No 21
>KOG0109|consensus
Probab=99.94 E-value=1.1e-26 Score=181.61 Aligned_cols=145 Identities=19% Similarity=0.388 Sum_probs=136.5
Q ss_pred cEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEccCCccc
Q psy4057 12 NFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDV 91 (246)
Q Consensus 12 ~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~~~~~~ 91 (246)
-+|||+|||..+++.+|+.+|++||+|.+|.|++ +||||..++...|..||+.|+|.+|+|.-|.|+-++.++
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvK-----NYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs-- 75 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVK-----NYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS-- 75 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeec-----ccceEEeecccccHHHHhhcccceecceEEEEEeccccC--
Confidence 3699999999999999999999999999999965 899999999999999999999999999999999986553
Q ss_pred cccccCccccccccccCCCCCCCChhHHhhhhhhhHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCCCCCCCC
Q psy4057 92 ISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPN 171 (246)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (246)
.++
T Consensus 76 -----------------------------------------------------------------------------k~s 78 (346)
T KOG0109|consen 76 -----------------------------------------------------------------------------KAS 78 (346)
T ss_pred -----------------------------------------------------------------------------CCc
Confidence 268
Q ss_pred cEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCCccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEee
Q psy4057 172 QILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFA 244 (246)
Q Consensus 172 ~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~a 244 (246)
++|+|+|+.+.|+.++|+..|++||.|..+.+++| |+||.|+..++|..|+..|||++|+ |++|+|+.+
T Consensus 79 tkl~vgNis~tctn~ElRa~fe~ygpviecdivkd---y~fvh~d~~eda~~air~l~~~~~~-gk~m~vq~s 147 (346)
T KOG0109|consen 79 TKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD---YAFVHFDRAEDAVEAIRGLDNTEFQ-GKRMHVQLS 147 (346)
T ss_pred cccccCCCCccccCHHHhhhhcccCCceeeeeecc---eeEEEEeeccchHHHHhcccccccc-cceeeeeee
Confidence 88999999999999999999999999999999976 8999999999999999999999999 999999875
No 22
>KOG0145|consensus
Probab=99.93 E-value=5e-25 Score=170.08 Aligned_cols=207 Identities=22% Similarity=0.360 Sum_probs=145.6
Q ss_pred CcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccC---CCCccEEEEEEcCHHHHHHHHHHhcCCccCC--eeEEEEEc
Q psy4057 11 TNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKT---LKMRGQAFVIFKEIASATNALRSMQGFPFYD--KPMRIQYS 85 (246)
Q Consensus 11 ~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~---~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g--~~l~v~~a 85 (246)
+..|||.+||..++..+|..+|++||.|..-+|+-| +.+||.|||.|....+|+.||..|||..-.| .+|.|.|+
T Consensus 127 ~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFa 206 (360)
T KOG0145|consen 127 DANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFA 206 (360)
T ss_pred ccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEec
Confidence 567999999999999999999999999988877765 3799999999999999999999999988765 56999998
Q ss_pred cCCccccc--cccCccccccccccC-CCCCCCChhHHhhhhhhhHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCC
Q psy4057 86 KTDSDVIS--KIKGTFMERPKKVRK-QPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMAT 162 (246)
Q Consensus 86 ~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (246)
...+.... .....+... .++-. .-.++.. ........+......+.+++..
T Consensus 207 nnPsq~t~~a~ls~ly~sp-~rr~~Gp~hh~~~-------------------------r~r~~~~~~~~~~~~rfsP~~~ 260 (360)
T KOG0145|consen 207 NNPSQKTNQALLSQLYQSP-ARRYGGPMHHQAQ-------------------------RFRLDNLLNPHAAQARFSPMTI 260 (360)
T ss_pred CCcccccchhhhHHhhcCc-cccCCCcccchhh-------------------------hhccccccchhhhhccCCCccc
Confidence 54422100 000000000 00000 0000000 0000000000000011111111
Q ss_pred CC--------CC-CCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHh
Q psy4057 163 AG--------VP-EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLAL 228 (246)
Q Consensus 163 ~~--------~~-~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l 228 (246)
+. .+ ......+|||-||.++..+.-|.++|++||-|..|++++|- +|||||.+.+-++|..|+..|
T Consensus 261 d~m~~l~~~~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sL 340 (360)
T KOG0145|consen 261 DGMSGLAGVNLPGGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 340 (360)
T ss_pred cccceeeeeccCCCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHh
Confidence 11 11 22248899999999999999999999999999999999975 699999999999999999999
Q ss_pred CCCccCCCCceEEEee
Q psy4057 229 HGFKITPTHAMKISFA 244 (246)
Q Consensus 229 ~g~~i~~g~~l~v~~a 244 (246)
||+.++ ++.|.|+|-
T Consensus 341 NGy~lg-~rvLQVsFK 355 (360)
T KOG0145|consen 341 NGYRLG-DRVLQVSFK 355 (360)
T ss_pred cCcccc-ceEEEEEEe
Confidence 999999 999999984
No 23
>KOG0110|consensus
Probab=99.92 E-value=1.5e-24 Score=187.57 Aligned_cols=164 Identities=22% Similarity=0.318 Sum_probs=141.8
Q ss_pred EEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC------CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEcc
Q psy4057 13 FVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL------KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSK 86 (246)
Q Consensus 13 ~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~ 86 (246)
+|||.||+++++.++|..+|...|.|.++.|.... .|.|||||+|.+.++|+.|++.|+|+.+.|+.|.|.++.
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 39999999999999999999999999999776533 356999999999999999999999999999999999986
Q ss_pred CCccccccccCccccccccccCCCCCCCChhHHhhhhhhhHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCCC
Q psy4057 87 TDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVP 166 (246)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (246)
....... + ...+
T Consensus 597 ~k~~~~~-------------------------------------------------g-------------------K~~~ 608 (725)
T KOG0110|consen 597 NKPASTV-------------------------------------------------G-------------------KKKS 608 (725)
T ss_pred Ccccccc-------------------------------------------------c-------------------cccc
Confidence 2211000 0 0111
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeC-C----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEE
Q psy4057 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPN-R----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKI 241 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~-~----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v 241 (246)
.....+.|+|+|||+..+..+++.+|+.||.+.+|+|+.. . +|||||+|-+..+|.+|+.+|.++.++ |++|.+
T Consensus 609 ~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHly-GRrLVL 687 (725)
T KOG0110|consen 609 KKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLY-GRRLVL 687 (725)
T ss_pred cccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhccccee-chhhhe
Confidence 2334789999999999999999999999999999999986 2 589999999999999999999999999 999999
Q ss_pred Eeec
Q psy4057 242 SFAK 245 (246)
Q Consensus 242 ~~ak 245 (246)
+||+
T Consensus 688 EwA~ 691 (725)
T KOG0110|consen 688 EWAK 691 (725)
T ss_pred ehhc
Confidence 9997
No 24
>KOG0123|consensus
Probab=99.92 E-value=8.3e-24 Score=178.16 Aligned_cols=146 Identities=25% Similarity=0.397 Sum_probs=133.9
Q ss_pred cEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEccCCccc
Q psy4057 12 NFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDV 91 (246)
Q Consensus 12 ~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~~~~~~ 91 (246)
.+|||| +++++..|++.|+++|+|.+|++++|-.+-|||||.|.++++|.+|+++||...+.|++|+|.|+..+.
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~-- 76 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP-- 76 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC--
Confidence 478999 999999999999999999999999976566999999999999999999999999999999999985442
Q ss_pred cccccCccccccccccCCCCCCCChhHHhhhhhhhHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCCCCCCCC
Q psy4057 92 ISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPN 171 (246)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (246)
T Consensus 77 -------------------------------------------------------------------------------- 76 (369)
T KOG0123|consen 77 -------------------------------------------------------------------------------- 76 (369)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC---ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEee
Q psy4057 172 QILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR---HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFA 244 (246)
Q Consensus 172 ~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~---~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~a 244 (246)
..+||+||+++++..+|.++|+.||+|.+|++..+. +|| ||+|.+.++|.+|+..|||..+. ++.|.|...
T Consensus 77 ~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~-~kki~vg~~ 150 (369)
T KOG0123|consen 77 SLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLN-GKKIYVGLF 150 (369)
T ss_pred ceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccC-CCeeEEeec
Confidence 119999999999999999999999999999999977 578 99999999999999999999999 888888543
No 25
>KOG0124|consensus
Probab=99.91 E-value=2.7e-24 Score=173.24 Aligned_cols=164 Identities=20% Similarity=0.284 Sum_probs=139.1
Q ss_pred cEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC---CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEccCC
Q psy4057 12 NFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL---KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTD 88 (246)
Q Consensus 12 ~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~~~ 88 (246)
++||||.|+++..|+-|+.-|.+||+|.+|.+.-|. ++||||||+|+-+|.|+-|+++|||..+.||.|+|.+...-
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNm 193 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNM 193 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCC
Confidence 689999999999999999999999999999887665 89999999999999999999999999999999999863211
Q ss_pred ccccccccCccccccccccCCCCCCCChhHHhhhhhhhHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCCCCC
Q psy4057 89 SDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQ 168 (246)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (246)
.. +..-+...+ ++.
T Consensus 194 pQ---------------------------------------AQpiID~vq---------------------------eeA 207 (544)
T KOG0124|consen 194 PQ---------------------------------------AQPIIDMVQ---------------------------EEA 207 (544)
T ss_pred cc---------------------------------------cchHHHHHH---------------------------HHH
Confidence 10 000000000 011
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEE
Q psy4057 169 PPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKIS 242 (246)
Q Consensus 169 ~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~ 242 (246)
....++||..+.++++++||++.|+.||+|+.|.+.++. +|||||+|.+..+...|+..||=+.++ |..|+|.
T Consensus 208 k~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLG-GQyLRVG 285 (544)
T KOG0124|consen 208 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLG-GQYLRVG 285 (544)
T ss_pred HhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcc-cceEecc
Confidence 236679999999999999999999999999999999966 689999999999999999999999999 9999885
No 26
>KOG0147|consensus
Probab=99.91 E-value=4.7e-24 Score=180.04 Aligned_cols=229 Identities=15% Similarity=0.166 Sum_probs=148.1
Q ss_pred CCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccC---CCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEE
Q psy4057 8 ICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKT---LKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQY 84 (246)
Q Consensus 8 ~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~---~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 84 (246)
..|-.+|||+||..+.+++.|+.+|++||.|+.|.+..+ ++++|||||+|.+.++|++|+++|||+.+.|+.|+|..
T Consensus 275 ~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~ 354 (549)
T KOG0147|consen 275 TGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSV 354 (549)
T ss_pred ccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEE
Confidence 345555999999999999999999999999999999876 48999999999999999999999999999999999988
Q ss_pred ccCCccccccccCccccccccccCCCCCCCChhHHhhhhhh--------hHHHHHHHHHHHHHHH-hcccccCCCCCCCC
Q psy4057 85 SKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKK--------AAKEQARLMQAQQQQM-QALSVQQPPVSQPA 155 (246)
Q Consensus 85 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 155 (246)
.....+....-. ...+.... .....+.......+.+.. ..+.+..+.....+.. ......+.......
T Consensus 355 v~~r~~~~~a~~-~~~d~D~~--d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 431 (549)
T KOG0147|consen 355 VTERVDTKEAAV-TQFDFDED--DRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVD 431 (549)
T ss_pred eeeecccccccc-cccccchh--hccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccC
Confidence 654433221100 00000000 000000000000000000 0011111111000000 00000000011111
Q ss_pred CCCCCCCCCCCCCCCCcEEEEcCCCC--CCC--------HHHHHHHHccCCCceEEEEeeCCccEEEEEeCCHHHHHHHH
Q psy4057 156 PPAPMATAGVPEQPPNQILFLTNLPE--ETS--------EMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAK 225 (246)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~l~v~nL~~--~~t--------~e~l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~Al 225 (246)
++.- ...-.+++.|+.++|+-. ..| .|++.+.|+.||+|.+|.|.++..|+.||.|.+.+.|..|.
T Consensus 432 p~~~----~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns~g~VYvrc~s~~~A~~a~ 507 (549)
T KOG0147|consen 432 PADA----SPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNSAGCVYVRCPSAEAAGTAV 507 (549)
T ss_pred cccc----ccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCCCceEEEecCcHHHHHHHH
Confidence 1100 111237899999999733 222 36888999999999999999998899999999999999999
Q ss_pred HHhCCCccCCCCceEEEee
Q psy4057 226 LALHGFKITPTHAMKISFA 244 (246)
Q Consensus 226 ~~l~g~~i~~g~~l~v~~a 244 (246)
.+|||++|. |+.|...|-
T Consensus 508 ~alhgrWF~-gr~Ita~~~ 525 (549)
T KOG0147|consen 508 KALHGRWFA-GRMITAKYL 525 (549)
T ss_pred HHHhhhhhc-cceeEEEEe
Confidence 999999999 999999883
No 27
>KOG0144|consensus
Probab=99.90 E-value=4.5e-23 Score=169.32 Aligned_cols=85 Identities=27% Similarity=0.454 Sum_probs=75.8
Q ss_pred CCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC--CCccEEEEEEcCHHHHHHHHHHhcCCc-c--CCeeEE
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL--KMRGQAFVIFKEIASATNALRSMQGFP-F--YDKPMR 81 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~--~~kg~aFV~f~~~~~A~~Ai~~lng~~-~--~g~~l~ 81 (246)
++...++|||+-|+..++|.+++++|++||.|++|.|+|+. .+||||||+|.+.+.|..||+.|||.. + ...+|.
T Consensus 120 r~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLV 199 (510)
T KOG0144|consen 120 RIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLV 199 (510)
T ss_pred ccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceE
Confidence 34567899999999999999999999999999999999965 899999999999999999999999943 4 458899
Q ss_pred EEEccCCccc
Q psy4057 82 IQYSKTDSDV 91 (246)
Q Consensus 82 v~~a~~~~~~ 91 (246)
|.|++.+.+.
T Consensus 200 VkFADtqkdk 209 (510)
T KOG0144|consen 200 VKFADTQKDK 209 (510)
T ss_pred EEecccCCCc
Confidence 9999876553
No 28
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.89 E-value=3.8e-21 Score=169.64 Aligned_cols=81 Identities=20% Similarity=0.339 Sum_probs=75.1
Q ss_pred CCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC---CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEc
Q psy4057 9 CVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL---KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYS 85 (246)
Q Consensus 9 ~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a 85 (246)
...++|||+||+.++++++|+++|+.||.|.++++.++. +++|||||+|.+.++|.+|++.||+..+.|+.|+|.++
T Consensus 202 ~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kA 281 (612)
T TIGR01645 202 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 281 (612)
T ss_pred cccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEec
Confidence 345799999999999999999999999999999999864 68999999999999999999999999999999999998
Q ss_pred cCCc
Q psy4057 86 KTDS 89 (246)
Q Consensus 86 ~~~~ 89 (246)
...+
T Consensus 282 i~pP 285 (612)
T TIGR01645 282 VTPP 285 (612)
T ss_pred CCCc
Confidence 7644
No 29
>KOG0146|consensus
Probab=99.89 E-value=1.1e-22 Score=157.80 Aligned_cols=235 Identities=22% Similarity=0.337 Sum_probs=149.0
Q ss_pred CCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEcc--CCCCccEEEEEEcCHHHHHHHHHHhcCCc-cCC--eeEEEEE
Q psy4057 10 VTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALK--TLKMRGQAFVIFKEIASATNALRSMQGFP-FYD--KPMRIQY 84 (246)
Q Consensus 10 ~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~--~~~~kg~aFV~f~~~~~A~~Ai~~lng~~-~~g--~~l~v~~ 84 (246)
.+++||||-|...-.|+|++.+|..||.|++|.+++ |+.+||+|||.|.+..+|+.||..|+|.. +.| .-|-|.|
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 478999999999999999999999999999999997 45899999999999999999999999943 444 5588899
Q ss_pred ccCCcccccccc-------Ccccccccc-------------cc-------------------------------------
Q psy4057 85 SKTDSDVISKIK-------GTFMERPKK-------------VR------------------------------------- 107 (246)
Q Consensus 85 a~~~~~~~~~~~-------~~~~~~~~~-------------~~------------------------------------- 107 (246)
++.+.+...++- |.+...... ..
T Consensus 98 ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A~ 177 (371)
T KOG0146|consen 98 ADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAAA 177 (371)
T ss_pred ccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcccccC
Confidence 876543222111 111000000 00
Q ss_pred C-CCCC-CCChh---------------HHhhhhh-hhHHHHHHHH------------------HHHHHHHhcccccC---
Q psy4057 108 K-QPAP-VEDPA---------------EAKKSKK-KAAKEQARLM------------------QAQQQQMQALSVQQ--- 148 (246)
Q Consensus 108 ~-~~~~-~~~~~---------------~~~~~~~-~~~~~~~~~~------------------~~~~~~~~~~~~~~--- 148 (246)
. .... ..... -.+.... ..+...+... .-.+....+.+...
T Consensus 178 Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aay 257 (371)
T KOG0146|consen 178 PVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAAY 257 (371)
T ss_pred CcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhhc
Confidence 0 0000 00000 0000000 0000000000 00000000000000
Q ss_pred CCC---CCCCCCCCCC--CCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCH
Q psy4057 149 PPV---SQPAPPAPMA--TAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENE 218 (246)
Q Consensus 149 ~~~---~~~~~~~~~~--~~~~~~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~ 218 (246)
|.. ..+..|.++. ....-..|..|.|||--||.+..+.+|...|-.||.|++.++.-|+ +.||||.|++.
T Consensus 258 paays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp 337 (371)
T KOG0146|consen 258 PAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNP 337 (371)
T ss_pred chhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCc
Confidence 000 0000011111 1112367789999999999999999999999999999999988877 57999999999
Q ss_pred HHHHHHHHHhCCCccCCCCceEEEeec
Q psy4057 219 MQSAAAKLALHGFKITPTHAMKISFAK 245 (246)
Q Consensus 219 ~~A~~Al~~l~g~~i~~g~~l~v~~ak 245 (246)
.+|++||+.|||+.|+ =++|+|..-|
T Consensus 338 ~SaQaAIqAMNGFQIG-MKRLKVQLKR 363 (371)
T KOG0146|consen 338 ASAQAAIQAMNGFQIG-MKRLKVQLKR 363 (371)
T ss_pred hhHHHHHHHhcchhhh-hhhhhhhhcC
Confidence 9999999999999999 7999987643
No 30
>KOG0123|consensus
Probab=99.87 E-value=1.9e-21 Score=163.92 Aligned_cols=170 Identities=21% Similarity=0.333 Sum_probs=144.2
Q ss_pred ccCCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC-CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEE
Q psy4057 5 LAHICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL-KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83 (246)
Q Consensus 5 ~~~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~-~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~ 83 (246)
|-..+-...|||.||+++++-.+|++.|+.||.|.+|++..+. .++|| ||+|.++++|++|++.+||..+.|+.|.|.
T Consensus 70 m~s~rd~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg 148 (369)
T KOG0123|consen 70 MWSQRDPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVG 148 (369)
T ss_pred ehhccCCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEe
Confidence 3344444559999999999999999999999999999999876 68999 999999999999999999999999999999
Q ss_pred EccCCccccccccCccccccccccCCCCCCCChhHHhhhhhhhHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCC
Q psy4057 84 YSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATA 163 (246)
Q Consensus 84 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (246)
....+........
T Consensus 149 ~~~~~~er~~~~~------------------------------------------------------------------- 161 (369)
T KOG0123|consen 149 LFERKEEREAPLG------------------------------------------------------------------- 161 (369)
T ss_pred eccchhhhccccc-------------------------------------------------------------------
Confidence 8755532111000
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCce
Q psy4057 164 GVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR----HDIAFVEFENEMQSAAAKLALHGFKITPTHAM 239 (246)
Q Consensus 164 ~~~~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l 239 (246)
. ....-+.+++.|++.+.+++.|...|+.||.|..+.++.+. ++||||.|.+.+.|..|+..|||..++ +..+
T Consensus 162 -~-~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~-~~~~ 238 (369)
T KOG0123|consen 162 -E-YKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLNGKIFG-DKEL 238 (369)
T ss_pred -c-hhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhccCCcCC-ccce
Confidence 0 22246678899999999999999999999999999999965 589999999999999999999999998 8888
Q ss_pred EEEeec
Q psy4057 240 KISFAK 245 (246)
Q Consensus 240 ~v~~ak 245 (246)
.|.-+.
T Consensus 239 ~V~~aq 244 (369)
T KOG0123|consen 239 YVGRAQ 244 (369)
T ss_pred eecccc
Confidence 876543
No 31
>KOG0105|consensus
Probab=99.86 E-value=1.6e-20 Score=138.31 Aligned_cols=173 Identities=16% Similarity=0.217 Sum_probs=133.1
Q ss_pred CCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEccCC
Q psy4057 9 CVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTD 88 (246)
Q Consensus 9 ~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~~~ 88 (246)
..+++|||+|||.++.+.+|.++|.+||.|..|.+......-+||||+|++..+|+.||..-+|..+.|..|+|+++..-
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 45789999999999999999999999999999988665566799999999999999999999999999999999997543
Q ss_pred ccccccccCccccccccccCCCCCCCChhHHhhhhhhhHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCCCCC
Q psy4057 89 SDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQ 168 (246)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (246)
...... .+.+. .+.....+......+ +.-
T Consensus 84 r~s~~~-~G~y~-----------------------------------------gggrgGgg~gg~rgp---------psr 112 (241)
T KOG0105|consen 84 RSSSDR-RGSYS-----------------------------------------GGGRGGGGGGGRRGP---------PSR 112 (241)
T ss_pred Cccccc-ccccC-----------------------------------------CCCCCCCCCCcccCC---------ccc
Confidence 211100 00000 000000000000000 011
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCCccEEEEEeCCHHHHHHHHHHhCCCccC
Q psy4057 169 PPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKIT 234 (246)
Q Consensus 169 ~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~ 234 (246)
-..-.+.|++||.+-+|++|++....-|.|....+.++ |+++|+|...|+.+-|+..|+...+.
T Consensus 113 rSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD--g~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 113 RSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD--GVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred ccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc--cceeeeeeehhhHHHHHHhhcccccc
Confidence 12457889999999999999999999999999999988 58999999999999999999987764
No 32
>KOG1457|consensus
Probab=99.86 E-value=1.7e-21 Score=147.42 Aligned_cols=221 Identities=18% Similarity=0.271 Sum_probs=137.4
Q ss_pred CcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC----CCccEEEEEEcCHHHHHHHHHHhcCCcc---CCeeEEEE
Q psy4057 11 TNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL----KMRGQAFVIFKEIASATNALRSMQGFPF---YDKPMRIQ 83 (246)
Q Consensus 11 ~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~----~~kg~aFV~f~~~~~A~~Ai~~lng~~~---~g~~l~v~ 83 (246)
=+||||.+||.|+...+|+.+|..|--.+...+.-+. ..+.+||++|.+..+|..|+..|||..| .+.+|+|+
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiE 113 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIE 113 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEee
Confidence 4899999999999999999999999778887665443 3458999999999999999999999988 58899999
Q ss_pred EccCCccccccccCc------ccccc---cccc-C-CCCCCCChhHHhhh-hhhhHHHHHHHHHHHHHHHhcccccCCCC
Q psy4057 84 YSKTDSDVISKIKGT------FMERP---KKVR-K-QPAPVEDPAEAKKS-KKKAAKEQARLMQAQQQQMQALSVQQPPV 151 (246)
Q Consensus 84 ~a~~~~~~~~~~~~~------~~~~~---~~~~-~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (246)
+++..........+. ..... +... . ..+++......... .+++..+-.....-.+.......+..|..
T Consensus 114 lAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~a 193 (284)
T KOG1457|consen 114 LAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPSA 193 (284)
T ss_pred ehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCcc
Confidence 998765433322221 00000 0000 0 11111111000000 00000000000000000000000111110
Q ss_pred CCCCCCCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-ccEEEEEeCCHHHHHHHHHHhCC
Q psy4057 152 SQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-HDIAFVEFENEMQSAAAKLALHG 230 (246)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-~g~afV~f~~~~~A~~Al~~l~g 230 (246)
..+.- -............+|||.||..+||+++|+.+|++|.....+++.... ...||++|.+.+.|..||..|+|
T Consensus 194 ~a~l~---ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg 270 (284)
T KOG1457|consen 194 NAHLE---KSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQG 270 (284)
T ss_pred cchhh---hhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhc
Confidence 00000 000111234458899999999999999999999999998887776643 45899999999999999999999
Q ss_pred CccC
Q psy4057 231 FKIT 234 (246)
Q Consensus 231 ~~i~ 234 (246)
..+.
T Consensus 271 ~~~s 274 (284)
T KOG1457|consen 271 NLLS 274 (284)
T ss_pred ceec
Confidence 8774
No 33
>KOG1190|consensus
Probab=99.84 E-value=1.1e-19 Score=148.51 Aligned_cols=191 Identities=20% Similarity=0.353 Sum_probs=143.3
Q ss_pred CcEEEecCC-ChhhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEccCCc
Q psy4057 11 TNFVYVTHI-SSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTDS 89 (246)
Q Consensus 11 ~~~l~V~nl-~~~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~~~~ 89 (246)
+..|.|.|| .+.+|.+-|+-+|+-||+|.+|+|+..++ ..|.|+|.+...|+-|++.|+|..++|++|+|.+++...
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk--d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~ 374 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK--DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTN 374 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC--cceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcc
Confidence 577888888 55788888999999999999999988643 779999999999999999999999999999999997654
Q ss_pred cccccccCccccccccccCCCCCCCChhHHhhhhhhhHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCCCCCC
Q psy4057 90 DVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQP 169 (246)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (246)
-...+. | ..+..-..++..+ +...+ ..+...--....|
T Consensus 375 vqlp~e-g-------q~d~glT~dy~~s----------------------pLhrf------------kkpgsKN~~ni~P 412 (492)
T KOG1190|consen 375 VQLPRE-G-------QEDQGLTKDYGNS----------------------PLHRF------------KKPGSKNYQNIFP 412 (492)
T ss_pred ccCCCC-C-------CccccccccCCCC----------------------chhhc------------cCcccccccccCC
Confidence 211110 0 0000000000000 00000 0000001123678
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHccCCCc-eEEEEeeCCccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEeec
Q psy4057 170 PNQILFLTNLPEETSEMMLSMLFNQFPGF-KEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAK 245 (246)
Q Consensus 170 ~~~~l~v~nL~~~~t~e~l~~~f~~~G~i-~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~ak 245 (246)
|+.+|.+.|+|.++++|+|+.+|..-|.. +-.++..+.+.+|++.+.+.|+|..|+-.|+.+.++++..|+|+|+|
T Consensus 413 psatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSk 489 (492)
T KOG1190|consen 413 PSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSK 489 (492)
T ss_pred chhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCCcceeecccCChhHhhhhccccccccCCCCceEEEEeec
Confidence 99999999999999999999999998877 44555555557999999999999999999999999988899999997
No 34
>KOG0148|consensus
Probab=99.84 E-value=3.2e-20 Score=144.31 Aligned_cols=130 Identities=16% Similarity=0.349 Sum_probs=110.6
Q ss_pred cEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEccCCccc
Q psy4057 12 NFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDV 91 (246)
Q Consensus 12 ~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~~~~~~ 91 (246)
++|||+||+.+++|+-|-.||++.|.|.+++++.+ .|.|.++.....
T Consensus 7 rtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~--------------------------------e~~v~wa~~p~n- 53 (321)
T KOG0148|consen 7 RTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD--------------------------------ELKVNWATAPGN- 53 (321)
T ss_pred ceEEeeccChhhHHHHHHHHHHhccccccceeehh--------------------------------hhccccccCccc-
Confidence 89999999999999999999999999999999875 356666533310
Q ss_pred cccccCccccccccccCCCCCCCChhHHhhhhhhhHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCCCCCCCC
Q psy4057 92 ISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPN 171 (246)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (246)
.+-+.....
T Consensus 54 -----------------------------------------------------------------------Qsk~t~~~h 62 (321)
T KOG0148|consen 54 -----------------------------------------------------------------------QSKPTSNQH 62 (321)
T ss_pred -----------------------------------------------------------------------CCCCccccc
Confidence 000111235
Q ss_pred cEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEeecC
Q psy4057 172 QILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246 (246)
Q Consensus 172 ~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~ak~ 246 (246)
-.+||+.|...++-|+|++.|.+||+|.++++++|. +|||||.|.+.++|..||+.|||.+|+ +|.|+--||-|
T Consensus 63 fhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG-~R~IRTNWATR 141 (321)
T KOG0148|consen 63 FHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLG-RRTIRTNWATR 141 (321)
T ss_pred eeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeec-cceeecccccc
Confidence 678999999999999999999999999999999976 699999999999999999999999999 99999998743
No 35
>KOG0147|consensus
Probab=99.83 E-value=4.7e-21 Score=162.04 Aligned_cols=169 Identities=22% Similarity=0.366 Sum_probs=136.6
Q ss_pred CCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC---CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEcc
Q psy4057 10 VTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL---KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSK 86 (246)
Q Consensus 10 ~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~ 86 (246)
--+++|+--|+...+..+|.++|+.+|.|.+|+++.|. +++|.|+|+|.+.++...|+. |.|..++|.+|.|+.+.
T Consensus 178 d~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq~sE 256 (549)
T KOG0147|consen 178 DQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQLSE 256 (549)
T ss_pred hHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEecccH
Confidence 34667776677777889999999999999999999876 788999999999999999996 99999999999999863
Q ss_pred CCccccccccCccccccccccCCCCCCCChhHHhhhhhhhHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCCC
Q psy4057 87 TDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVP 166 (246)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (246)
..... . ++..+.. . ....
T Consensus 257 aeknr-------------------------------------------~--a~~s~a~-------~----------~k~~ 274 (549)
T KOG0147|consen 257 AEKNR-------------------------------------------A--ANASPAL-------Q----------GKGF 274 (549)
T ss_pred HHHHH-------------------------------------------H--Hhccccc-------c----------cccc
Confidence 22110 0 0000000 0 0000
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEE
Q psy4057 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKI 241 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v 241 (246)
.. |-..|||+||.+++++++|+.+|+.||.|..|.+..+. +|||||+|.+.++|..|+..|||+++- |+.|+|
T Consensus 275 ~~-p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelA-Gr~ikV 352 (549)
T KOG0147|consen 275 TG-PMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELA-GRLIKV 352 (549)
T ss_pred cc-chhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceec-CceEEE
Confidence 11 22229999999999999999999999999999999974 689999999999999999999999999 999998
Q ss_pred Ee
Q psy4057 242 SF 243 (246)
Q Consensus 242 ~~ 243 (246)
+.
T Consensus 353 ~~ 354 (549)
T KOG0147|consen 353 SV 354 (549)
T ss_pred EE
Confidence 74
No 36
>KOG0110|consensus
Probab=99.81 E-value=3e-19 Score=155.02 Aligned_cols=207 Identities=19% Similarity=0.254 Sum_probs=140.3
Q ss_pred CCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEcc
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSK 86 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~ 86 (246)
.....+.++|+|||..+..++|...|..||+|..|.+.+ .--.|.|.|.++.+|+.|.+.|....+...++.+.++.
T Consensus 381 ~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~---~G~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP 457 (725)
T KOG0110|consen 381 AERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPP---GGTGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAP 457 (725)
T ss_pred hhhhcceeeeccCccccccHHHHHHhhcccccceeecCc---ccceeeeeecCccchHHHHHHhchhhhccCccccccCh
Confidence 345678899999999999999999999999999996653 22349999999999999999999999999999999875
Q ss_pred CCccccccccCccccccccccCCCCCCCChhHHhhhhhhhHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCCC-C
Q psy4057 87 TDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAG-V 165 (246)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 165 (246)
...-... ...............+...+.. +.. ..+.....++.-...... .
T Consensus 458 ~dvf~~~-pka~~~~~e~~~~~ee~~~Er~-------------------------s~~--d~~v~eD~d~te~ss~a~~a 509 (725)
T KOG0110|consen 458 EDVFTED-PKADDLSAESRSKMEENPSERV-------------------------SAE--DGQVEEDKDPTEESSLARVA 509 (725)
T ss_pred hhhccCC-ccccccccccccccccCcceec-------------------------ccc--cccccccCCccccccchhhh
Confidence 4422111 1000000000000000000000 000 000000000000000000 1
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC--------ccEEEEEeCCHHHHHHHHHHhCCCccCCCC
Q psy4057 166 PEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR--------HDIAFVEFENEMQSAAAKLALHGFKITPTH 237 (246)
Q Consensus 166 ~~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~--------~g~afV~f~~~~~A~~Al~~l~g~~i~~g~ 237 (246)
......+.|||+||++++|.++|..+|...|.|.++.|...+ .|||||+|.+.++|++|++.|+|+.++ |+
T Consensus 510 ~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvld-GH 588 (725)
T KOG0110|consen 510 EDEETETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLD-GH 588 (725)
T ss_pred hccccchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceec-Cc
Confidence 111122339999999999999999999999999999887744 289999999999999999999999999 99
Q ss_pred ceEEEeec
Q psy4057 238 AMKISFAK 245 (246)
Q Consensus 238 ~l~v~~ak 245 (246)
.|.|+++.
T Consensus 589 ~l~lk~S~ 596 (725)
T KOG0110|consen 589 KLELKISE 596 (725)
T ss_pred eEEEEecc
Confidence 99999874
No 37
>KOG1190|consensus
Probab=99.80 E-value=1.7e-18 Score=141.69 Aligned_cols=213 Identities=20% Similarity=0.287 Sum_probs=139.3
Q ss_pred EEecCCChhhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccCCe--eEEEEEccCCccc
Q psy4057 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK--PMRIQYSKTDSDV 91 (246)
Q Consensus 14 l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~--~l~v~~a~~~~~~ 91 (246)
++|.|+-+.++-+-|+.+|++||.|.+|.-.. +...-.|.|+|.+.++|+.|...|+|..+..- +|+|.|++-....
T Consensus 153 ~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~-Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~Ln 231 (492)
T KOG1190|consen 153 TIIENMFYPVSLDVLHQVFSKFGFVLKIITFT-KNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLN 231 (492)
T ss_pred EEeccceeeeEHHHHHHHHhhcceeEEEEEEe-cccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccce
Confidence 34599999999999999999999999985543 23445599999999999999999999888543 4788887653211
Q ss_pred cccccCccccccccccC-CCCCCCChhHHhhhhhhhHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCCCCCC-
Q psy4057 92 ISKIKGTFMERPKKVRK-QPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQP- 169 (246)
Q Consensus 92 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 169 (246)
..-. +.+.++- ....... ..++........+.. ..+... ..|...+.........+ -....
T Consensus 232 vKyn------ndkSRDyTnp~LP~g-----d~~p~l~~~~~aa~~----~~~~~~-g~p~aip~~~~~a~~a~-~~~~~~ 294 (492)
T KOG1190|consen 232 VKYN------NDKSRDYTNPDLPVG-----DGQPSLDQLMAAAFG----SVPAVH-GAPLAIPSGAAGANAAD-GKIESP 294 (492)
T ss_pred eecc------ccccccccCCCCCCC-----ccccccchhhhcccc----cccccc-CCcccCCccchhhcccc-cccccC
Confidence 1000 0011110 1111000 111111111111000 000000 01222111110000010 11111
Q ss_pred -CCcEEEEcCCCC-CCCHHHHHHHHccCCCceEEEEeeCCccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEeec
Q psy4057 170 -PNQILFLTNLPE-ETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAK 245 (246)
Q Consensus 170 -~~~~l~v~nL~~-~~t~e~l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~ak 245 (246)
.+.+|.|.||.. .+|.+.|..+|+.||.|.+|++..+++..|+|+|.+...|+.|++.|+|..++ |++|+|.|+|
T Consensus 295 ~~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~-gk~lrvt~SK 371 (492)
T KOG1190|consen 295 SANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLY-GKKLRVTLSK 371 (492)
T ss_pred CCceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceec-CceEEEeecc
Confidence 278999998755 89999999999999999999999999889999999999999999999999999 9999999997
No 38
>KOG0124|consensus
Probab=99.78 E-value=1.6e-17 Score=134.44 Aligned_cols=84 Identities=20% Similarity=0.344 Sum_probs=76.4
Q ss_pred CCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC---CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEE
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL---KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~ 83 (246)
+....++|||..+.+|.+++||+..|+.||+|..|.+-+.. .+||||||+|.+..+-..|+..||-+.+.|+.|+|.
T Consensus 206 eAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVG 285 (544)
T KOG0124|consen 206 EAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVG 285 (544)
T ss_pred HHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecc
Confidence 34567899999999999999999999999999999998865 789999999999999999999999999999999998
Q ss_pred EccCCcc
Q psy4057 84 YSKTDSD 90 (246)
Q Consensus 84 ~a~~~~~ 90 (246)
.+....+
T Consensus 286 k~vTPP~ 292 (544)
T KOG0124|consen 286 KCVTPPD 292 (544)
T ss_pred cccCCCc
Confidence 8765544
No 39
>KOG1548|consensus
Probab=99.78 E-value=1.5e-17 Score=133.52 Aligned_cols=193 Identities=18% Similarity=0.242 Sum_probs=137.2
Q ss_pred CcEEEecCCChhhhHHHHHHHhhccCCeeE--------EEEccCC--CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeE
Q psy4057 11 TNFVYVTHISSTDLKKSLYAIFSQFGQIMD--------IVALKTL--KMRGQAFVIFKEIASATNALRSMQGFPFYDKPM 80 (246)
Q Consensus 11 ~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~--------v~~~~~~--~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l 80 (246)
+..|||.|||.++|.+++.++|+++|-|.. |++.++. ..+|-|.+.|-..+++.-|+.-|++..+.|+.|
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~ 213 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKKL 213 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcEE
Confidence 566999999999999999999999997744 5666654 778999999999999999999999999999999
Q ss_pred EEEEccCCccccccccCccccccccccCCCCCCCChhHHhhhhhhhHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCC
Q psy4057 81 RIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPM 160 (246)
Q Consensus 81 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (246)
+|+.|+.+. +|.+....+...+ ..+ ..+.... ....+.|+.-.
T Consensus 214 rVerAkfq~------Kge~~~~~k~k~k--~~~----~kk~~k~---------------q~k~~dw~pd~---------- 256 (382)
T KOG1548|consen 214 RVERAKFQM------KGEYDASKKEKGK--CKD----KKKLKKQ---------------QQKLLDWRPDR---------- 256 (382)
T ss_pred EEehhhhhh------ccCcCcccccccc--ccc----HHHHHHH---------------HHhhcccCCCc----------
Confidence 999986552 2222111111000 000 0000000 11111121111
Q ss_pred CCCCCCCCCCCcEEEEcCCCC----CCC-------HHHHHHHHccCCCceEEEEee-CCccEEEEEeCCHHHHHHHHHHh
Q psy4057 161 ATAGVPEQPPNQILFLTNLPE----ETS-------EMMLSMLFNQFPGFKEVRLVP-NRHDIAFVEFENEMQSAAAKLAL 228 (246)
Q Consensus 161 ~~~~~~~~~~~~~l~v~nL~~----~~t-------~e~l~~~f~~~G~i~~v~~~~-~~~g~afV~f~~~~~A~~Al~~l 228 (246)
...+.....++|+++|+-. ..+ +++|++.++.||.|.+|.|.. .+.|.+-|.|.+.+.|..|++.|
T Consensus 257 --~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m 334 (382)
T KOG1548|consen 257 --DDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTM 334 (382)
T ss_pred --cccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHh
Confidence 0111233588999999843 233 467888899999999887764 34689999999999999999999
Q ss_pred CCCccCCCCceEEEe
Q psy4057 229 HGFKITPTHAMKISF 243 (246)
Q Consensus 229 ~g~~i~~g~~l~v~~ 243 (246)
+|+.|+ |+.|.-+.
T Consensus 335 ~GR~fd-gRql~A~i 348 (382)
T KOG1548|consen 335 DGRWFD-GRQLTASI 348 (382)
T ss_pred cCeeec-ceEEEEEE
Confidence 999999 89887654
No 40
>KOG4205|consensus
Probab=99.77 E-value=1.3e-18 Score=142.04 Aligned_cols=161 Identities=20% Similarity=0.333 Sum_probs=134.5
Q ss_pred CCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC---CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEcc
Q psy4057 10 VTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL---KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSK 86 (246)
Q Consensus 10 ~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~ 86 (246)
...+|||++|+-+++++.|+++|++||+|.++.++++. +++||+||+|.+.+....++. ...+++.|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 67899999999999999999999999999999999876 889999999999999999876 44578899999888875
Q ss_pred CCccccccccCccccccccccCCCCCCCChhHHhhhhhhhHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCCC
Q psy4057 87 TDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVP 166 (246)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (246)
+..+.. ...
T Consensus 84 ~r~~~~-----------------------------------------------------------------------~~~ 92 (311)
T KOG4205|consen 84 SREDQT-----------------------------------------------------------------------KVG 92 (311)
T ss_pred Cccccc-----------------------------------------------------------------------ccc
Confidence 543210 000
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEE
Q psy4057 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKI 241 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v 241 (246)
.......+||++||.+++++++++.|++||.|.++-++.|. +||+||.|.+.++..+++. ...+.|. |+.+.|
T Consensus 93 ~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~-gk~vev 170 (311)
T KOG4205|consen 93 RHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFN-GKKVEV 170 (311)
T ss_pred cccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeec-CceeeE
Confidence 11257899999999999999999999999999999988866 5899999999999888754 5666777 787777
Q ss_pred Eee
Q psy4057 242 SFA 244 (246)
Q Consensus 242 ~~a 244 (246)
.-|
T Consensus 171 krA 173 (311)
T KOG4205|consen 171 KRA 173 (311)
T ss_pred eec
Confidence 644
No 41
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.77 E-value=4.2e-18 Score=125.81 Aligned_cols=81 Identities=22% Similarity=0.386 Sum_probs=74.9
Q ss_pred CCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC---CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEc
Q psy4057 9 CVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL---KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYS 85 (246)
Q Consensus 9 ~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a 85 (246)
..+++|||+|||.++++++|+++|++||.|.+|.++.+. +++|||||+|.+.++|+.|++.||+..+.|++|+|.++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 357899999999999999999999999999999998764 78999999999999999999999999999999999998
Q ss_pred cCCc
Q psy4057 86 KTDS 89 (246)
Q Consensus 86 ~~~~ 89 (246)
..+.
T Consensus 112 ~~~~ 115 (144)
T PLN03134 112 NDRP 115 (144)
T ss_pred CcCC
Confidence 6553
No 42
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.75 E-value=1.8e-17 Score=122.52 Aligned_cols=77 Identities=21% Similarity=0.359 Sum_probs=72.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEE
Q psy4057 168 QPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKIS 242 (246)
Q Consensus 168 ~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~ 242 (246)
...+++|||+|||..+|+++|+++|++||.|.++.++.++ +|||||+|.+.++|+.|++.|||..|+ |++|+|+
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~-Gr~l~V~ 109 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELN-GRHIRVN 109 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC-CEEEEEE
Confidence 3358899999999999999999999999999999999865 589999999999999999999999999 9999999
Q ss_pred eec
Q psy4057 243 FAK 245 (246)
Q Consensus 243 ~ak 245 (246)
|++
T Consensus 110 ~a~ 112 (144)
T PLN03134 110 PAN 112 (144)
T ss_pred eCC
Confidence 986
No 43
>KOG0106|consensus
Probab=99.74 E-value=7.1e-18 Score=129.88 Aligned_cols=166 Identities=19% Similarity=0.241 Sum_probs=131.0
Q ss_pred cEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEccCCccc
Q psy4057 12 NFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDV 91 (246)
Q Consensus 12 ~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~~~~~~ 91 (246)
..+||++|++.+.+.+|.++|..||.|.++.+.. ||+||.|.+..+|..|+..+|+..|.|-.+.|.++......
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~-----gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~ 76 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN-----GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRG 76 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec-----ccceeccCchhhhhcccchhcCceecceeeeeecccccccc
Confidence 3689999999999999999999999999997743 89999999999999999999999999988888887643211
Q ss_pred cccccCccccccccccCCCCCCCChhHHhhhhhhhHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCCCCCCCC
Q psy4057 92 ISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPN 171 (246)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (246)
.... ..+. ..+. ...........
T Consensus 77 ~g~~---------------------------------------------~~g~--r~~~----------~~~~~~p~~s~ 99 (216)
T KOG0106|consen 77 RGRP---------------------------------------------RGGD--RRSD----------SRRYRPPSRTH 99 (216)
T ss_pred cCCC---------------------------------------------CCCC--ccch----------hhccCCccccc
Confidence 1000 0000 0000 00111123358
Q ss_pred cEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCCccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEe
Q psy4057 172 QILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISF 243 (246)
Q Consensus 172 ~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~ 243 (246)
+.++|.|+...+.+.+|.+.|+++|.+..... +.+++||+|.+.++|..|+..|+|..+. +++|.+.+
T Consensus 100 ~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~---~~~~~~v~Fs~~~da~ra~~~l~~~~~~-~~~l~~~~ 167 (216)
T KOG0106|consen 100 FRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA---RRNFAFVEFSEQEDAKRALEKLDGKKLN-GRRISVEK 167 (216)
T ss_pred ceeeeccchhhhhHHHHhhhhcccCCCchhhh---hccccceeehhhhhhhhcchhccchhhc-Cceeeecc
Confidence 88999999999999999999999999944444 4468999999999999999999999999 99998854
No 44
>KOG4212|consensus
Probab=99.71 E-value=1.1e-15 Score=126.39 Aligned_cols=206 Identities=16% Similarity=0.191 Sum_probs=139.9
Q ss_pred CCCCCcEEEecCCChhhhHHHHHHHhh-ccCCeeEEEEccCC--CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEE
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLYAIFS-QFGQIMDIVALKTL--KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~~~F~-~fG~i~~v~~~~~~--~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~ 83 (246)
...-.+.+||.|||++....+|+++|. +.|+|+.|.++-|. ++||+|.|+|+++|.+++|++.||...+.||+|.|.
T Consensus 40 ~~~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vK 119 (608)
T KOG4212|consen 40 VAARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVK 119 (608)
T ss_pred cccccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEe
Confidence 344567799999999999999999996 77999999988765 899999999999999999999999999999999986
Q ss_pred EccC-Cccccc---cc-cCccccc-------c--cc-------ccC-CCCCCCChhHH---------------hhhhhhh
Q psy4057 84 YSKT-DSDVIS---KI-KGTFMER-------P--KK-------VRK-QPAPVEDPAEA---------------KKSKKKA 126 (246)
Q Consensus 84 ~a~~-~~~~~~---~~-~~~~~~~-------~--~~-------~~~-~~~~~~~~~~~---------------~~~~~~~ 126 (246)
-... +.+... +. .+.+... . +. ... ....|.+..+. .+..-..
T Consensus 120 Ed~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl 199 (608)
T KOG4212|consen 120 EDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGL 199 (608)
T ss_pred ccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccc
Confidence 5322 111000 00 0000000 0 00 000 00111111111 1111111
Q ss_pred HHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeC
Q psy4057 127 AKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPN 206 (246)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~ 206 (246)
..+..+ +. +. -..|....+||.||.+.+....|++.|.--|.|..|.+-.+
T Consensus 200 ~~~Flr-------~~---------------------h~-f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~id 250 (608)
T KOG4212|consen 200 SASFLR-------SL---------------------HI-FSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSID 250 (608)
T ss_pred hhhhhh-------hc---------------------cC-CCCCccceeeeeccccccchHHHHHHhccceeeeeeceeec
Confidence 111111 00 00 13345778899999999999999999999999999988886
Q ss_pred C----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEE
Q psy4057 207 R----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKIS 242 (246)
Q Consensus 207 ~----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~ 242 (246)
+ +|+|.++|.+.-.|-.|+..|++.-.. .+++.+.
T Consensus 251 KeG~s~G~~vi~y~hpveavqaIsml~~~g~~-~~~~~~R 289 (608)
T KOG4212|consen 251 KEGNSRGFAVIEYDHPVEAVQAISMLDRQGLF-DRRMTVR 289 (608)
T ss_pred cccccCCeeEEEecchHHHHHHHHhhccCCCc-cccceee
Confidence 6 689999999999999999999975544 4555544
No 45
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.70 E-value=8e-17 Score=137.05 Aligned_cols=80 Identities=18% Similarity=0.453 Sum_probs=74.1
Q ss_pred CCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC---CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEc
Q psy4057 9 CVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL---KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYS 85 (246)
Q Consensus 9 ~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a 85 (246)
..+++|||+|||.++++++|+++|++||.|.+++++++. +++|||||+|.+.++|.+|+..|||..+.|+.|+|.|+
T Consensus 267 ~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~ 346 (352)
T TIGR01661 267 GAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFK 346 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 345589999999999999999999999999999999764 78999999999999999999999999999999999997
Q ss_pred cCC
Q psy4057 86 KTD 88 (246)
Q Consensus 86 ~~~ 88 (246)
..+
T Consensus 347 ~~~ 349 (352)
T TIGR01661 347 TNK 349 (352)
T ss_pred cCC
Confidence 654
No 46
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.70 E-value=6.6e-17 Score=104.93 Aligned_cols=68 Identities=31% Similarity=0.503 Sum_probs=64.5
Q ss_pred EEecCCChhhhHHHHHHHhhccCCeeEEEEccC--CCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEE
Q psy4057 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVALKT--LKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMR 81 (246)
Q Consensus 14 l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~--~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~ 81 (246)
|||+|||.++++++|+++|++||.|..+.+..+ ++.+++|||+|.+.++|..|++.|||..+.|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999885 47789999999999999999999999999999986
No 47
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.67 E-value=2.4e-16 Score=102.26 Aligned_cols=66 Identities=33% Similarity=0.554 Sum_probs=62.2
Q ss_pred EEEcCCCCCCCHHHHHHHHccCCCceEEEEeeC----CccEEEEEeCCHHHHHHHHHHhCCCccCCCCceE
Q psy4057 174 LFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPN----RHDIAFVEFENEMQSAAAKLALHGFKITPTHAMK 240 (246)
Q Consensus 174 l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~----~~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~ 240 (246)
|||+|||.++|+++|+++|++||.|..+.+..+ .+++|||+|.+.++|..|++.|||..+. |+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~-~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKIN-GRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEET-TEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEEC-ccCcC
Confidence 799999999999999999999999999999995 2589999999999999999999999999 88875
No 48
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.66 E-value=4e-16 Score=123.31 Aligned_cols=75 Identities=23% Similarity=0.279 Sum_probs=71.8
Q ss_pred CcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEcc
Q psy4057 11 TNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSK 86 (246)
Q Consensus 11 ~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~ 86 (246)
.++|||+|||+.+++++|+++|+.||.|++|.|.+++.++|||||+|.++++|..|+. |||..|.|+.|+|.++.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEecc
Confidence 5899999999999999999999999999999999988788999999999999999996 99999999999999974
No 49
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.66 E-value=7.9e-16 Score=135.94 Aligned_cols=137 Identities=15% Similarity=0.157 Sum_probs=101.7
Q ss_pred CCCcEEEecCCChhhhHHHHHHHhhcc--CCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEcc
Q psy4057 9 CVTNFVYVTHISSTDLKKSLYAIFSQF--GQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSK 86 (246)
Q Consensus 9 ~~~~~l~V~nl~~~~~e~~l~~~F~~f--G~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~ 86 (246)
.+.++|||+||+.++++++|+++|++| |.|++|.++ ++||||+|.+.++|.+|++.|||..|.|+.|+|.+++
T Consensus 231 ~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~-----rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Ak 305 (578)
T TIGR01648 231 AKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI-----RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAK 305 (578)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee-----cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 346889999999999999999999999 999999774 4799999999999999999999999999999999997
Q ss_pred CCccccccccCccccccccccCCCCCCCChhHHhhhhhhhHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCCC
Q psy4057 87 TDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVP 166 (246)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (246)
+.........+. .. +. +. .............
T Consensus 306 p~~~~~~~~~~r--------g~----------------------------------gg----~~---~~~~~~~~~~g~~ 336 (578)
T TIGR01648 306 PVDKKSYVRYTR--------GT----------------------------------GG----RG---KERQAARQSLGQV 336 (578)
T ss_pred CCCccccccccc--------cc----------------------------------CC----Cc---ccccccccccCcc
Confidence 653210000000 00 00 00 0000000001122
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHccCCCce
Q psy4057 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFK 199 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~ 199 (246)
..+.+.++++.|++++.+++.+..+|..+|.|.
T Consensus 337 ~sp~s~~~~~g~~~~~~~~~~~~~~f~~~g~~~ 369 (578)
T TIGR01648 337 YDPASRSLAYEDYYYHPPYAPSLHFPRMPGPIR 369 (578)
T ss_pred cCccccccccccccccccccchhhccccCcccc
Confidence 456799999999999999999999999999864
No 50
>KOG1456|consensus
Probab=99.66 E-value=1.4e-14 Score=117.79 Aligned_cols=232 Identities=16% Similarity=0.200 Sum_probs=148.9
Q ss_pred CCCCCcEEEe--cCCChhhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccC-C-eeEEE
Q psy4057 7 HICVTNFVYV--THISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFY-D-KPMRI 82 (246)
Q Consensus 7 ~~~~~~~l~V--~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~-g-~~l~v 82 (246)
...|++.|.+ -|--+..+-+-|+.++.+.|+|..|.|++. +--.|.|+|.+.+.|++|.+.|||..|. | =+|+|
T Consensus 116 s~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKI 193 (494)
T KOG1456|consen 116 SATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKI 193 (494)
T ss_pred CCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cceeeEEeechhHHHHHHHhhcccccccccceeEEE
Confidence 4566777766 577778899999999999999999999874 5567999999999999999999998874 3 46899
Q ss_pred EEccCCccccccccC-ccccccccccCCCCCCCChhHHhhhhhhhHHHHHHHHHHHHHHHhcccc---cCCCCCCCCCCC
Q psy4057 83 QYSKTDSDVISKIKG-TFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSV---QQPPVSQPAPPA 158 (246)
Q Consensus 83 ~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 158 (246)
+||++.....-+... ++.-..... ........+...+..++......+.. |...-.+..+ -.|..-.+.+-.
T Consensus 194 eyAkP~rlnV~knd~DtwDyTlp~~-~~~~~~g~~~~~r~~~p~~~~~~pss---~~G~h~~y~sg~~~~p~~~~P~r~~ 269 (494)
T KOG1456|consen 194 EYAKPTRLNVQKNDKDTWDYTLPDL-RGPYDPGRNHYDRQRQPAPLGYHPSS---RGGGHSGYYSGDRHGPPHPPPSRYR 269 (494)
T ss_pred EecCcceeeeeecCCccccccCCCC-CCCCCCCCCCCccccCCCccCCChhh---cCCCCCCCcccccCCCCCCCCCCCc
Confidence 999876432222211 111110000 00000001111111111000000000 0000000000 000000000000
Q ss_pred -----CCCCCCCCCCCCCcEEEEcCCCC-CCCHHHHHHHHccCCCceEEEEeeCCccEEEEEeCCHHHHHHHHHHhCCCc
Q psy4057 159 -----PMATAGVPEQPPNQILFLTNLPE-ETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFK 232 (246)
Q Consensus 159 -----~~~~~~~~~~~~~~~l~v~nL~~-~~t~e~l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~ 232 (246)
+....+.....+++++.|-+|.. ..+-+.|.++|..||.|.+|++++...|.|.|++.+...-++|+..||+..
T Consensus 270 ~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~gtamVemgd~~aver~v~hLnn~~ 349 (494)
T KOG1456|consen 270 DGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPGTAMVEMGDAYAVERAVTHLNNIP 349 (494)
T ss_pred cccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccceeEEEcCcHHHHHHHHHHhccCc
Confidence 00011123455799999999988 667899999999999999999999998999999999999999999999999
Q ss_pred cCCCCceEEEeec
Q psy4057 233 ITPTHAMKISFAK 245 (246)
Q Consensus 233 i~~g~~l~v~~ak 245 (246)
+. |.+|.|.++|
T Consensus 350 lf-G~kl~v~~Sk 361 (494)
T KOG1456|consen 350 LF-GGKLNVCVSK 361 (494)
T ss_pred cc-cceEEEeecc
Confidence 98 9999999987
No 51
>KOG1456|consensus
Probab=99.65 E-value=3.4e-15 Score=121.26 Aligned_cols=168 Identities=23% Similarity=0.277 Sum_probs=136.8
Q ss_pred ccCCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHH--HhcCCccCCeeEEE
Q psy4057 5 LAHICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALR--SMQGFPFYDKPMRI 82 (246)
Q Consensus 5 ~~~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~--~lng~~~~g~~l~v 82 (246)
+-+..++-.|.|++|-..++|.+|-+-.+.||.|..+.++. .+..|.|+|++++.|.+++. .-|...+.|+.--+
T Consensus 25 phk~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P---~~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~ 101 (494)
T KOG1456|consen 25 PHKPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMP---HKRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALF 101 (494)
T ss_pred CCCCCCCceEEEeccccccchhHHHHHHhcCCceEEEEecc---ccceeeeeeccccchhhheehhccCcccccCchhhc
Confidence 34677889999999999999999999999999999988766 56779999999999999986 23445667777666
Q ss_pred EEccCCccccccccCccccccccccCCCCCCCChhHHhhhhhhhHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCC
Q psy4057 83 QYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMAT 162 (246)
Q Consensus 83 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (246)
.|+..+.. .+.
T Consensus 102 NyStsq~i--~R~------------------------------------------------------------------- 112 (494)
T KOG1456|consen 102 NYSTSQCI--ERP------------------------------------------------------------------- 112 (494)
T ss_pred ccchhhhh--ccC-------------------------------------------------------------------
Confidence 67643321 000
Q ss_pred CCCCCCCCCcEEEEc--CCCCCCCHHHHHHHHccCCCceEEEEeeCCccEEEEEeCCHHHHHHHHHHhCCCccCCC-Cce
Q psy4057 163 AGVPEQPPNQILFLT--NLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPT-HAM 239 (246)
Q Consensus 163 ~~~~~~~~~~~l~v~--nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~~g-~~l 239 (246)
......++.+|++. |--+.+|-+.|..++...|.|.+|.|.+.+--.|.|+|++.+.|++|..+|||..|+.| ++|
T Consensus 113 -g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTL 191 (494)
T KOG1456|consen 113 -GDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTL 191 (494)
T ss_pred -CCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEeccceeeEEeechhHHHHHHHhhcccccccccceeE
Confidence 01233468888886 54558899999999999999999999998744799999999999999999999999866 899
Q ss_pred EEEeec
Q psy4057 240 KISFAK 245 (246)
Q Consensus 240 ~v~~ak 245 (246)
+|+|||
T Consensus 192 KIeyAk 197 (494)
T KOG1456|consen 192 KIEYAK 197 (494)
T ss_pred EEEecC
Confidence 999998
No 52
>KOG0107|consensus
Probab=99.65 E-value=7.9e-16 Score=112.70 Aligned_cols=76 Identities=22% Similarity=0.365 Sum_probs=72.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCCccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEeec
Q psy4057 169 PPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAK 245 (246)
Q Consensus 169 ~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~ak 245 (246)
+..+.|||+||+..+++.+|..+|..||.+..|+|..++.|||||+|++..+|..|+..|+|..|+ |..++|++++
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~c-G~r~rVE~S~ 83 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDIC-GSRIRVELST 83 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCcccc-CceEEEEeec
Confidence 358999999999999999999999999999999999999999999999999999999999999999 9999999864
No 53
>KOG0114|consensus
Probab=99.64 E-value=2.5e-15 Score=100.61 Aligned_cols=75 Identities=21% Similarity=0.431 Sum_probs=70.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC--ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEee
Q psy4057 169 PPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR--HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFA 244 (246)
Q Consensus 169 ~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~--~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~a 244 (246)
..++.|||+|||+++|.|+..++|.+||.|.-|++-... +|.|||.|++..+|.+|++.|+|+.++ ++.|.|-|.
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~-~ryl~vlyy 92 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVD-NRYLVVLYY 92 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccC-CceEEEEec
Confidence 359999999999999999999999999999999988755 699999999999999999999999999 999999773
No 54
>KOG0114|consensus
Probab=99.64 E-value=1.7e-15 Score=101.40 Aligned_cols=79 Identities=23% Similarity=0.467 Sum_probs=74.7
Q ss_pred CCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEcc
Q psy4057 8 ICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSK 86 (246)
Q Consensus 8 ~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~ 86 (246)
...++-|||.|||++++.++..++|.+||.|.-|++-.+...+|.|||.|++..+|++|++.|+|..+.++.+.|-|..
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 3457899999999999999999999999999999998888999999999999999999999999999999999999864
No 55
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.64 E-value=1.2e-15 Score=128.09 Aligned_cols=78 Identities=24% Similarity=0.442 Sum_probs=73.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEE
Q psy4057 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKI 241 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v 241 (246)
.....++|||+|||.++|+++|+++|+.||.|++|+|+.+. +|||||+|.+.++|..|+..|||..+. +++|+|
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~-gr~i~V 181 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVR-NKRLKV 181 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccC-Cceeee
Confidence 45568999999999999999999999999999999999875 489999999999999999999999999 999999
Q ss_pred Eeec
Q psy4057 242 SFAK 245 (246)
Q Consensus 242 ~~ak 245 (246)
.|++
T Consensus 182 ~~a~ 185 (346)
T TIGR01659 182 SYAR 185 (346)
T ss_pred eccc
Confidence 9986
No 56
>KOG0121|consensus
Probab=99.63 E-value=5.1e-16 Score=107.89 Aligned_cols=80 Identities=28% Similarity=0.426 Sum_probs=73.7
Q ss_pred cCCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC---CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEE
Q psy4057 6 AHICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL---KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRI 82 (246)
Q Consensus 6 ~~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v 82 (246)
.....++||||+||+.-++|++|+++|+++|+|..|.|--+. ...|||||+|-+.++|..|+..++|+.+..++|+|
T Consensus 31 ~a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~ 110 (153)
T KOG0121|consen 31 EALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRI 110 (153)
T ss_pred HHHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceee
Confidence 345679999999999999999999999999999999887665 45699999999999999999999999999999999
Q ss_pred EEc
Q psy4057 83 QYS 85 (246)
Q Consensus 83 ~~a 85 (246)
.+.
T Consensus 111 D~D 113 (153)
T KOG0121|consen 111 DWD 113 (153)
T ss_pred ecc
Confidence 985
No 57
>KOG0120|consensus
Probab=99.63 E-value=1.1e-15 Score=131.11 Aligned_cols=181 Identities=19% Similarity=0.234 Sum_probs=139.3
Q ss_pred CCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC---CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEc
Q psy4057 9 CVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL---KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYS 85 (246)
Q Consensus 9 ~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a 85 (246)
....++||++||...++.++.++...||.+....++.+. .++||||.+|.++.....|+..|||..+.+++|.|+.+
T Consensus 287 ~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A 366 (500)
T KOG0120|consen 287 DSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRA 366 (500)
T ss_pred cccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehh
Confidence 445789999999999999999999999999887777654 78999999999999999999999999999999999998
Q ss_pred cCCccccccccCccccccccccCCCCCCCChhHHhhhhhhhHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCC
Q psy4057 86 KTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGV 165 (246)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (246)
............ . .....+.-+.....
T Consensus 367 ~~g~~~~~~~~~----------------------------------------------~-------~~~~~~~i~~~~~q 393 (500)
T KOG0120|consen 367 IVGASNANVNFN----------------------------------------------I-------SQSQVPGIPLLMTQ 393 (500)
T ss_pred hccchhccccCC----------------------------------------------c-------cccccccchhhhcc
Confidence 655321111110 0 00000000011123
Q ss_pred CCCCCCcEEEEcCCC--CCCC--------HHHHHHHHccCCCceEEEEeeC-C-------ccEEEEEeCCHHHHHHHHHH
Q psy4057 166 PEQPPNQILFLTNLP--EETS--------EMMLSMLFNQFPGFKEVRLVPN-R-------HDIAFVEFENEMQSAAAKLA 227 (246)
Q Consensus 166 ~~~~~~~~l~v~nL~--~~~t--------~e~l~~~f~~~G~i~~v~~~~~-~-------~g~afV~f~~~~~A~~Al~~ 227 (246)
....+..+|++.|+- .+.. -|+++..|+.||.|..|.+... . .|..||+|.+.+++++|+..
T Consensus 394 ~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~ 473 (500)
T KOG0120|consen 394 MAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEE 473 (500)
T ss_pred cCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHH
Confidence 456678889988862 2222 1477788999999999999886 2 37899999999999999999
Q ss_pred hCCCccCCCCceEEEe
Q psy4057 228 LHGFKITPTHAMKISF 243 (246)
Q Consensus 228 l~g~~i~~g~~l~v~~ 243 (246)
|+|++|. |+++..+|
T Consensus 474 L~GrKF~-nRtVvtsY 488 (500)
T KOG0120|consen 474 LTGRKFA-NRTVVASY 488 (500)
T ss_pred ccCceeC-CcEEEEEe
Confidence 9999999 99998887
No 58
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.62 E-value=2.7e-15 Score=116.82 Aligned_cols=77 Identities=22% Similarity=0.295 Sum_probs=72.8
Q ss_pred CCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEccC
Q psy4057 10 VTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKT 87 (246)
Q Consensus 10 ~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~~ 87 (246)
.+.+|||+||++.+++++|+++|+.||+|++|.|++++.++++|||+|.++++|..|+. |||..|.|++|.|..+..
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCcc
Confidence 45899999999999999999999999999999999999888999999999999999996 999999999999998653
No 59
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.60 E-value=4.7e-15 Score=117.28 Aligned_cols=73 Identities=21% Similarity=0.307 Sum_probs=68.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC--ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEeec
Q psy4057 171 NQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR--HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAK 245 (246)
Q Consensus 171 ~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~--~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~ak 245 (246)
.++|||+|||+++|+++|+++|+.||.|.+|+++.++ +|||||+|.+.++|..|+. |||..|. |+.|+|.++.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~-gr~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIV-DQSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeC-CceEEEEecc
Confidence 5799999999999999999999999999999999975 6899999999999999995 9999999 9999999874
No 60
>KOG0125|consensus
Probab=99.60 E-value=1.6e-15 Score=121.29 Aligned_cols=78 Identities=19% Similarity=0.307 Sum_probs=73.0
Q ss_pred CcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC-CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEccCC
Q psy4057 11 TNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL-KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTD 88 (246)
Q Consensus 11 ~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~-~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~~~ 88 (246)
-++|+|.|||+...+-||+..|.+||.|.+|.|+.+. .|||||||+|.++++|++|-++|||..+.||+|.|..+..+
T Consensus 96 pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATar 174 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATAR 174 (376)
T ss_pred CceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccchh
Confidence 3799999999999999999999999999999888665 78999999999999999999999999999999999998554
No 61
>KOG0121|consensus
Probab=99.59 E-value=3.4e-15 Score=103.80 Aligned_cols=73 Identities=18% Similarity=0.318 Sum_probs=69.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEe
Q psy4057 170 PNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISF 243 (246)
Q Consensus 170 ~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~ 243 (246)
.+++|||+||++.+++|+|.++|+++|.|.+|-+-.|+ -|||||+|.+.++|..|++.++|+.++ .++|+|.|
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLd-dr~ir~D~ 112 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLD-DRPIRIDW 112 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCccc-ccceeeec
Confidence 59999999999999999999999999999999988877 489999999999999999999999999 89999987
No 62
>KOG0107|consensus
Probab=99.59 E-value=5.1e-15 Score=108.49 Aligned_cols=81 Identities=25% Similarity=0.378 Sum_probs=74.5
Q ss_pred CCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEcc
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSK 86 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~ 86 (246)
.-+-.++|||+||+..+++.||...|..||.|.+|.|-+ ...|||||+|++..+|..|+..|+|..|.|..|+|+.+.
T Consensus 6 ~~~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvAr--nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 6 DRNGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVAR--NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred ccCCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEee--cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 335589999999999999999999999999999999977 477999999999999999999999999999999999987
Q ss_pred CCc
Q psy4057 87 TDS 89 (246)
Q Consensus 87 ~~~ 89 (246)
...
T Consensus 84 G~~ 86 (195)
T KOG0107|consen 84 GRP 86 (195)
T ss_pred CCc
Confidence 654
No 63
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.59 E-value=2.2e-14 Score=117.34 Aligned_cols=167 Identities=21% Similarity=0.300 Sum_probs=119.8
Q ss_pred CcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC---CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEccC
Q psy4057 11 TNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL---KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKT 87 (246)
Q Consensus 11 ~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~~ 87 (246)
.++|||+|||.++++++|+++|..||.|..+.+..+. +++|+|||.|.+.++|..|++.++|..|.|++|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 5999999999999999999999999999999988774 8999999999999999999999999999999999999643
Q ss_pred -CccccccccCccccccccccCCCCCCCChhHHhhhhhhhHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCCC
Q psy4057 88 -DSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVP 166 (246)
Q Consensus 88 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (246)
...... ... . .. .. ..... ......
T Consensus 195 ~~~~~~~-~~~-----------~--~~---------------------~~---~~~~~----------------~~~~~~ 220 (306)
T COG0724 195 ASQPRSE-LSN-----------N--LD---------------------AS---FAKKL----------------SRGKAL 220 (306)
T ss_pred ccccccc-ccc-----------c--cc---------------------hh---hhccc----------------cccccc
Confidence 100000 000 0 00 00 00000 001122
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCCc-----cEEEEEeCCHHHHHHHHHHhCCC
Q psy4057 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRH-----DIAFVEFENEMQSAAAKLALHGF 231 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~~-----g~afV~f~~~~~A~~Al~~l~g~ 231 (246)
.......+++.|++..++...+...|..+|.+....+..... ...++.+.....+..+.......
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (306)
T COG0724 221 LLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESNSRGNKK 290 (306)
T ss_pred cccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhhccccce
Confidence 445688999999999999999999999999997777776542 22334444444444444444443
No 64
>KOG4211|consensus
Probab=99.59 E-value=8.3e-14 Score=117.07 Aligned_cols=160 Identities=18% Similarity=0.226 Sum_probs=120.9
Q ss_pred cEEEecCCChhhhHHHHHHHhhccCCeeEEEEccC-CCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEccCCcc
Q psy4057 12 NFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKT-LKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSD 90 (246)
Q Consensus 12 ~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~-~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~~~~~ 90 (246)
..|-+.+||-.+|++||.++|+.++ |+++.+.+. ++..|-|||+|.+++++.+|++ .+-..+..|.|.|.-+.....
T Consensus 11 ~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~~~e~ 88 (510)
T KOG4211|consen 11 FEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAGGAEA 88 (510)
T ss_pred eEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccCCccc
Confidence 3444599999999999999999999 999888776 7999999999999999999998 666777778888887754421
Q ss_pred ccccccCccccccccccCCCCCCCChhHHhhhhhhhHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCCCCCCC
Q psy4057 91 VISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPP 170 (246)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (246)
.+..++..+ .....
T Consensus 89 ----------------------------------------------------------d~~~~~~g~--------~s~~~ 102 (510)
T KOG4211|consen 89 ----------------------------------------------------------DWVMRPGGP--------NSSAN 102 (510)
T ss_pred ----------------------------------------------------------cccccCCCC--------CCCCC
Confidence 000011110 11246
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHccCCCceE-EEEeeCC----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEE
Q psy4057 171 NQILFLTNLPEETSEMMLSMLFNQFPGFKE-VRLVPNR----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKI 241 (246)
Q Consensus 171 ~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~-v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v 241 (246)
..+|-+++||++||++||.++|+.--.+.. |.++.+. .|-|||.|++.+.|+.||.. |-..|. .+-|.|
T Consensus 103 d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iG-hRYIEv 176 (510)
T KOG4211|consen 103 DGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENIG-HRYIEV 176 (510)
T ss_pred CceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhhc-cceEEe
Confidence 788999999999999999999998666655 4445444 47899999999999999874 444455 455554
No 65
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.57 E-value=1.1e-14 Score=94.47 Aligned_cols=68 Identities=28% Similarity=0.502 Sum_probs=61.8
Q ss_pred EEecCCChhhhHHHHHHHhhccCCeeEEEEccCC--CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEE
Q psy4057 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL--KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMR 81 (246)
Q Consensus 14 l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~--~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~ 81 (246)
|||+|||..+++++|.++|+.||.|..+.+..+. .++++|||+|.+.++|.+|++.++|..+.|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7999999999999999999999999999998764 5789999999999999999999999999999875
No 66
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.57 E-value=1.4e-14 Score=94.03 Aligned_cols=66 Identities=33% Similarity=0.570 Sum_probs=60.5
Q ss_pred EEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceE
Q psy4057 174 LFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMK 240 (246)
Q Consensus 174 l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~ 240 (246)
|+|+|||.++++++|+++|+.||.|..+++..++ +++|||+|.+.++|..|++.++|..++ |+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~-g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEID-GRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEET-TEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEEC-CEEcC
Confidence 7899999999999999999999999999999985 589999999999999999999999999 88874
No 67
>KOG0122|consensus
Probab=99.57 E-value=2.2e-14 Score=110.50 Aligned_cols=75 Identities=28% Similarity=0.434 Sum_probs=72.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEee
Q psy4057 170 PNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFA 244 (246)
Q Consensus 170 ~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~a 244 (246)
...+|-|.||+.++++++|.++|.+||.|.++.|.+|+ +|||||.|.++++|++||..|||+-++ +-.|+|+|+
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd-~LILrvEws 266 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYD-NLILRVEWS 266 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccc-eEEEEEEec
Confidence 57889999999999999999999999999999999987 699999999999999999999999999 899999999
Q ss_pred c
Q psy4057 245 K 245 (246)
Q Consensus 245 k 245 (246)
|
T Consensus 267 k 267 (270)
T KOG0122|consen 267 K 267 (270)
T ss_pred C
Confidence 7
No 68
>KOG0111|consensus
Probab=99.57 E-value=2.6e-15 Score=113.77 Aligned_cols=81 Identities=28% Similarity=0.430 Sum_probs=75.9
Q ss_pred CCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC---CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEc
Q psy4057 9 CVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL---KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYS 85 (246)
Q Consensus 9 ~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a 85 (246)
.-.++|||++|..+++|.-|...|-+||.|.+|.+.-|. +.||||||+|.-.|+|..||..||+..+.||+|+|.++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 457999999999999999999999999999999998765 88999999999999999999999999999999999999
Q ss_pred cCCc
Q psy4057 86 KTDS 89 (246)
Q Consensus 86 ~~~~ 89 (246)
++..
T Consensus 88 kP~k 91 (298)
T KOG0111|consen 88 KPEK 91 (298)
T ss_pred CCcc
Confidence 7654
No 69
>KOG0122|consensus
Probab=99.57 E-value=1e-14 Score=112.28 Aligned_cols=79 Identities=25% Similarity=0.417 Sum_probs=74.0
Q ss_pred CCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC---CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEcc
Q psy4057 10 VTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL---KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSK 86 (246)
Q Consensus 10 ~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~ 86 (246)
-+++|-|.||+.+++|++|.+||.+||.|..|.+.++. .+||||||.|.+.++|.+||..|||.=+..--|+|+|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 45679999999999999999999999999999998865 899999999999999999999999999999999999997
Q ss_pred CC
Q psy4057 87 TD 88 (246)
Q Consensus 87 ~~ 88 (246)
+.
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 64
No 70
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.55 E-value=2.6e-14 Score=88.49 Aligned_cols=56 Identities=29% Similarity=0.511 Sum_probs=52.4
Q ss_pred HHHHHccCCCceEEEEeeCCccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEee
Q psy4057 188 LSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFA 244 (246)
Q Consensus 188 l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~a 244 (246)
|+++|++||.|.++.+.++..++|||+|.+.++|..|++.|||..+. |++|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~-g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFN-GRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEET-TEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEC-CcEEEEEEC
Confidence 68899999999999999887789999999999999999999999999 999999997
No 71
>PLN03213 repressor of silencing 3; Provisional
Probab=99.54 E-value=2.4e-14 Score=120.29 Aligned_cols=80 Identities=19% Similarity=0.207 Sum_probs=72.8
Q ss_pred CCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCH--HHHHHHHHHhcCCccCCeeEEEEEc
Q psy4057 8 ICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEI--ASATNALRSMQGFPFYDKPMRIQYS 85 (246)
Q Consensus 8 ~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~--~~A~~Ai~~lng~~~~g~~l~v~~a 85 (246)
.....+||||||++++++++|..+|..||.|.+|.|+|.. .||||||+|.+. .++.+||..|||..+.|+.|+|..|
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRET-GRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKA 85 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTK-GRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKA 85 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeccc-CCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeec
Confidence 3456899999999999999999999999999999999653 399999999988 7899999999999999999999998
Q ss_pred cCC
Q psy4057 86 KTD 88 (246)
Q Consensus 86 ~~~ 88 (246)
++.
T Consensus 86 KP~ 88 (759)
T PLN03213 86 KEH 88 (759)
T ss_pred cHH
Confidence 653
No 72
>KOG4207|consensus
Probab=99.53 E-value=1.6e-14 Score=108.55 Aligned_cols=80 Identities=23% Similarity=0.385 Sum_probs=74.0
Q ss_pred CCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC---CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEE
Q psy4057 8 ICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL---KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQY 84 (246)
Q Consensus 8 ~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 84 (246)
+.--.+|-|.||++.++-++|+.+|++||.|-+|.|.+|. .++|||||.|....+|+.|++.|+|.++.|+.|+|+.
T Consensus 10 v~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ 89 (256)
T KOG4207|consen 10 VEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQM 89 (256)
T ss_pred cccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehh
Confidence 3345678999999999999999999999999999999876 7889999999999999999999999999999999998
Q ss_pred ccC
Q psy4057 85 SKT 87 (246)
Q Consensus 85 a~~ 87 (246)
|+-
T Consensus 90 ary 92 (256)
T KOG4207|consen 90 ARY 92 (256)
T ss_pred hhc
Confidence 764
No 73
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.53 E-value=7.8e-14 Score=86.35 Aligned_cols=56 Identities=36% Similarity=0.748 Sum_probs=51.5
Q ss_pred HHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEc
Q psy4057 28 LYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYS 85 (246)
Q Consensus 28 l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a 85 (246)
|+++|++||+|.++.+.+.. +++|||+|.+.++|+.|++.|||..+.|++|+|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~--~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK--RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS--TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67999999999999997754 799999999999999999999999999999999986
No 74
>KOG0149|consensus
Probab=99.52 E-value=1.9e-14 Score=110.34 Aligned_cols=75 Identities=21% Similarity=0.357 Sum_probs=67.7
Q ss_pred CcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC---CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEcc
Q psy4057 11 TNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL---KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSK 86 (246)
Q Consensus 11 ~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~ 86 (246)
-.+||||+|+-++..+.|+++|++||+|++..++.|+ +|||||||+|++.++|.+|++.. .-.|.||+-.|.+|.
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp-~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDP-NPIIDGRKANCNLAS 89 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCC-CCcccccccccchhh
Confidence 4689999999999999999999999999999999876 99999999999999999999844 356799998888764
No 75
>KOG0125|consensus
Probab=99.52 E-value=4.6e-14 Score=113.00 Aligned_cols=76 Identities=22% Similarity=0.393 Sum_probs=70.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC---ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEee
Q psy4057 168 QPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR---HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFA 244 (246)
Q Consensus 168 ~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~---~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~a 244 (246)
....++|+|+|+|+...+-||+..|++||.|.+|.|+-+. +|||||+|++.++|.+|...|||..|. ||+|.|--|
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VE-GRkIEVn~A 171 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVE-GRKIEVNNA 171 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceee-ceEEEEecc
Confidence 3357899999999999999999999999999999999865 689999999999999999999999999 999999754
No 76
>KOG0126|consensus
Probab=99.52 E-value=1e-15 Score=112.74 Aligned_cols=77 Identities=21% Similarity=0.473 Sum_probs=72.3
Q ss_pred CCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC---CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEcc
Q psy4057 10 VTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL---KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSK 86 (246)
Q Consensus 10 ~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~ 86 (246)
-+.-|||||||++++|.||.-.|++||+|.+|.++||. +|+||||+.|++..+.--|+..|||..+.||+|+|....
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 35679999999999999999999999999999999875 899999999999999999999999999999999998753
No 77
>KOG4207|consensus
Probab=99.51 E-value=2.9e-14 Score=107.19 Aligned_cols=75 Identities=23% Similarity=0.334 Sum_probs=71.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEee
Q psy4057 170 PNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFA 244 (246)
Q Consensus 170 ~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~a 244 (246)
.-..|.|-||-+.++.++|+.+|++||.|-+|.|+.|+ +|||||.|.+..+|+.|+++|+|..++ |+.|+|++|
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ld-gRelrVq~a 90 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLD-GRELRVQMA 90 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeec-cceeeehhh
Confidence 46789999999999999999999999999999999987 599999999999999999999999999 999999998
Q ss_pred c
Q psy4057 245 K 245 (246)
Q Consensus 245 k 245 (246)
|
T Consensus 91 r 91 (256)
T KOG4207|consen 91 R 91 (256)
T ss_pred h
Confidence 6
No 78
>smart00362 RRM_2 RNA recognition motif.
Probab=99.51 E-value=1.1e-13 Score=89.45 Aligned_cols=69 Identities=33% Similarity=0.555 Sum_probs=64.4
Q ss_pred EEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC---ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEE
Q psy4057 173 ILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR---HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKIS 242 (246)
Q Consensus 173 ~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~---~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~ 242 (246)
+|+|+|||..+++++|+++|++||.+..+.+..+. +++|||+|.+.++|..|+..|+|..+. |++|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~-~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLG-GRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEEC-CEEEeeC
Confidence 48999999999999999999999999999999875 689999999999999999999999999 8988873
No 79
>KOG0113|consensus
Probab=99.50 E-value=6.6e-14 Score=110.74 Aligned_cols=80 Identities=15% Similarity=0.270 Sum_probs=75.2
Q ss_pred CCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC---CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEE
Q psy4057 8 ICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL---KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQY 84 (246)
Q Consensus 8 ~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 84 (246)
.-|-+||||+-|+++++|..|+..|+.||+|+.|.|+++. +++|||||+|..+.+...|.+..+|..|.|+.|.|.+
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 4688999999999999999999999999999999999874 8999999999999999999999999999999999988
Q ss_pred ccC
Q psy4057 85 SKT 87 (246)
Q Consensus 85 a~~ 87 (246)
-..
T Consensus 178 ERg 180 (335)
T KOG0113|consen 178 ERG 180 (335)
T ss_pred ccc
Confidence 543
No 80
>KOG4212|consensus
Probab=99.50 E-value=2.3e-12 Score=106.99 Aligned_cols=74 Identities=16% Similarity=0.228 Sum_probs=69.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCCccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEee
Q psy4057 170 PNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFA 244 (246)
Q Consensus 170 ~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~a 244 (246)
..|+|||+|||+++||+.|++-|..||.|..+.++...+..++|.|.++++|.+|+..|||.+++ |+.|+|.|.
T Consensus 535 Ka~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~GkskGVVrF~s~edAEra~a~Mngs~l~-Gr~I~V~y~ 608 (608)
T KOG4212|consen 535 KACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMENGKSKGVVRFFSPEDAERACALMNGSRLD-GRNIKVTYF 608 (608)
T ss_pred cccEEEEecCCccccHHHHHHHHHhccceehhhhhccCCccceEEecCHHHHHHHHHHhccCccc-CceeeeeeC
Confidence 47889999999999999999999999999999997766566899999999999999999999999 999999984
No 81
>smart00362 RRM_2 RNA recognition motif.
Probab=99.50 E-value=1.6e-13 Score=88.66 Aligned_cols=71 Identities=27% Similarity=0.492 Sum_probs=65.6
Q ss_pred EEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC-CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEE
Q psy4057 13 FVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL-KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83 (246)
Q Consensus 13 ~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~-~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~ 83 (246)
+|||+|||..++.++|+++|.+||.|..+.+.++. .++++|||+|.+.++|+.|+..+++..+.|++|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999888763 677999999999999999999999999999998863
No 82
>KOG4206|consensus
Probab=99.49 E-value=1.1e-13 Score=105.90 Aligned_cols=78 Identities=32% Similarity=0.478 Sum_probs=72.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHH----HHccCCCceEEEEeeCC--ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEE
Q psy4057 168 QPPNQILFLTNLPEETSEMMLSM----LFNQFPGFKEVRLVPNR--HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKI 241 (246)
Q Consensus 168 ~~~~~~l~v~nL~~~~t~e~l~~----~f~~~G~i~~v~~~~~~--~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v 241 (246)
..++.+|||.||...+..++|++ +|++||.|.+|...+.. +|.|||.|.+.+.|..|+..|+|+.|+ |++|+|
T Consensus 6 ~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFy-gK~mri 84 (221)
T KOG4206|consen 6 VNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFY-GKPMRI 84 (221)
T ss_pred cCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCccc-Cchhhe
Confidence 44566999999999999999998 99999999999988766 699999999999999999999999999 999999
Q ss_pred EeecC
Q psy4057 242 SFAKK 246 (246)
Q Consensus 242 ~~ak~ 246 (246)
+|||.
T Consensus 85 qyA~s 89 (221)
T KOG4206|consen 85 QYAKS 89 (221)
T ss_pred ecccC
Confidence 99984
No 83
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.49 E-value=2.2e-13 Score=106.25 Aligned_cols=72 Identities=19% Similarity=0.240 Sum_probs=66.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC--ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEe
Q psy4057 170 PNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR--HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISF 243 (246)
Q Consensus 170 ~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~--~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~ 243 (246)
...+|+|+||++.+|+++|+++|+.||.|.+|++++++ .++|||+|.+.++|..|+ .|||..|. +++|.|.-
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~-d~~I~It~ 77 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIV-DQRVCITR 77 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeC-CceEEEEe
Confidence 46899999999999999999999999999999999976 479999999999999998 69999999 89998864
No 84
>KOG0130|consensus
Probab=99.48 E-value=9.2e-14 Score=97.58 Aligned_cols=74 Identities=26% Similarity=0.401 Sum_probs=70.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEee
Q psy4057 170 PNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFA 244 (246)
Q Consensus 170 ~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~a 244 (246)
....|||.++....|+++|.+.|..||+|+.+.+-.++ +|||+|+|.+.++|+.|+..|||..+- |..|.|.|+
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll-~q~v~VDw~ 149 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELL-GQNVSVDWC 149 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhh-CCceeEEEE
Confidence 48899999999999999999999999999999999988 589999999999999999999999999 999999985
No 85
>PLN03213 repressor of silencing 3; Provisional
Probab=99.48 E-value=2.1e-13 Score=114.69 Aligned_cols=77 Identities=16% Similarity=0.191 Sum_probs=71.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-ccEEEEEeCCH--HHHHHHHHHhCCCccCCCCceEEEee
Q psy4057 168 QPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-HDIAFVEFENE--MQSAAAKLALHGFKITPTHAMKISFA 244 (246)
Q Consensus 168 ~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-~g~afV~f~~~--~~A~~Al~~l~g~~i~~g~~l~v~~a 244 (246)
.....+|||+||++.+++++|+.+|+.||.|.+|.|++.. +|||||+|.+. .++.+|+..|||..+. |+.|+|.-|
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWK-GR~LKVNKA 85 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWK-GGRLRLEKA 85 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeec-CceeEEeec
Confidence 3457899999999999999999999999999999999743 79999999987 7899999999999999 999999988
Q ss_pred c
Q psy4057 245 K 245 (246)
Q Consensus 245 k 245 (246)
|
T Consensus 86 K 86 (759)
T PLN03213 86 K 86 (759)
T ss_pred c
Confidence 7
No 86
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.45 E-value=8.1e-13 Score=85.85 Aligned_cols=70 Identities=36% Similarity=0.615 Sum_probs=65.9
Q ss_pred EEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEe
Q psy4057 173 ILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISF 243 (246)
Q Consensus 173 ~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~ 243 (246)
+|+|+|||..+++++|+++|+.||.|..+.+..++ .++|||+|.+.++|..|++.++|..+. |+++.|.|
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~-~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELG-GRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeEC-CeEEEEeC
Confidence 48899999999999999999999999999999876 689999999999999999999999999 99999875
No 87
>KOG0113|consensus
Probab=99.45 E-value=5.8e-13 Score=105.46 Aligned_cols=78 Identities=29% Similarity=0.456 Sum_probs=73.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEE
Q psy4057 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKI 241 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v 241 (246)
...|-+||||.-|++++++..|+..|+.||.|+.|+|+.+. +|||||+|.+..+...|...-+|..|+ |+.|.|
T Consensus 97 ~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Id-grri~V 175 (335)
T KOG0113|consen 97 IGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKID-GRRILV 175 (335)
T ss_pred cCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceec-CcEEEE
Confidence 45689999999999999999999999999999999999975 699999999999999999999999999 999999
Q ss_pred Eeec
Q psy4057 242 SFAK 245 (246)
Q Consensus 242 ~~ak 245 (246)
.|-+
T Consensus 176 DvER 179 (335)
T KOG0113|consen 176 DVER 179 (335)
T ss_pred Eecc
Confidence 8743
No 88
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.42 E-value=1.7e-12 Score=84.35 Aligned_cols=72 Identities=25% Similarity=0.538 Sum_probs=66.7
Q ss_pred EEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC--CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEE
Q psy4057 13 FVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL--KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQY 84 (246)
Q Consensus 13 ~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~--~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 84 (246)
+|+|+|||..+++++|+++|..||.|..+.+..+. ..+++|||+|.+.++|..|++.+++..+.|+++.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 58999999999999999999999999999998765 4689999999999999999999999999999998864
No 89
>KOG0130|consensus
Probab=99.42 E-value=4.3e-13 Score=94.25 Aligned_cols=77 Identities=16% Similarity=0.337 Sum_probs=70.5
Q ss_pred CcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC---CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEccC
Q psy4057 11 TNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL---KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKT 87 (246)
Q Consensus 11 ~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~~ 87 (246)
+-.|||.++..+.+|+++++.|..||+|.+|.+-.|. =.+|||+|+|.+.++|+.|++.+||..+.|.+|.|.|+..
T Consensus 72 GwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv 151 (170)
T KOG0130|consen 72 GWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFV 151 (170)
T ss_pred eEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEe
Confidence 4468999999999999999999999999999987665 4579999999999999999999999999999999998753
No 90
>KOG0105|consensus
Probab=99.41 E-value=3.6e-13 Score=99.68 Aligned_cols=75 Identities=23% Similarity=0.462 Sum_probs=68.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC--ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEeec
Q psy4057 170 PNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR--HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAK 245 (246)
Q Consensus 170 ~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~--~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~ak 245 (246)
.++.|||+|||.++.+.+|.++|.+||.|..|.+..-+ ..||||+|++..+|..|+..-+|+.++ |++|+|+|++
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdyd-g~rLRVEfpr 81 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYD-GCRLRVEFPR 81 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccC-cceEEEEecc
Confidence 57899999999999999999999999999887765533 579999999999999999999999999 9999999975
No 91
>KOG0111|consensus
Probab=99.41 E-value=1.3e-13 Score=104.59 Aligned_cols=75 Identities=24% Similarity=0.433 Sum_probs=71.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEee
Q psy4057 170 PNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFA 244 (246)
Q Consensus 170 ~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~a 244 (246)
..++|||++|..++++..|...|-+||.|.+|.++.|- +|||||+|.-.|+|.+||..||+.++. |++|+|-||
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~-GrtirVN~A 87 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELF-GRTIRVNLA 87 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhc-ceeEEEeec
Confidence 57899999999999999999999999999999999864 689999999999999999999999999 999999999
Q ss_pred c
Q psy4057 245 K 245 (246)
Q Consensus 245 k 245 (246)
|
T Consensus 88 k 88 (298)
T KOG0111|consen 88 K 88 (298)
T ss_pred C
Confidence 7
No 92
>smart00360 RRM RNA recognition motif.
Probab=99.41 E-value=1.1e-12 Score=84.35 Aligned_cols=66 Identities=36% Similarity=0.581 Sum_probs=61.1
Q ss_pred EcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEE
Q psy4057 176 LTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKIS 242 (246)
Q Consensus 176 v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~ 242 (246)
|+|||..+++++|+++|++||.|..+.+..++ +|+|||+|.+.++|..|+..|+|..+. |+.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~-~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELD-GRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeC-CcEEEeC
Confidence 57999999999999999999999999998875 479999999999999999999999998 8998874
No 93
>smart00360 RRM RNA recognition motif.
Probab=99.41 E-value=1.2e-12 Score=84.17 Aligned_cols=68 Identities=26% Similarity=0.494 Sum_probs=62.3
Q ss_pred ecCCChhhhHHHHHHHhhccCCeeEEEEccC---CCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEE
Q psy4057 16 VTHISSTDLKKSLYAIFSQFGQIMDIVALKT---LKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83 (246)
Q Consensus 16 V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~---~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~ 83 (246)
|+|||..+++++|+++|++||.|..+.+..+ +.++|+|||+|.+.++|..|+..+++..+.|+.|+|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 5799999999999999999999999988875 3678999999999999999999999999999998873
No 94
>KOG0117|consensus
Probab=99.39 E-value=2.6e-12 Score=106.90 Aligned_cols=76 Identities=24% Similarity=0.406 Sum_probs=71.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEe
Q psy4057 169 PPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISF 243 (246)
Q Consensus 169 ~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~ 243 (246)
+..+-|||+.||.++.+++|.-+|++.|+|-++|++.++ +|||||.|.+.+.|+.|++.||+++|-.|+.|.|+.
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 569999999999999999999999999999999999974 799999999999999999999999998899999976
Q ss_pred e
Q psy4057 244 A 244 (246)
Q Consensus 244 a 244 (246)
+
T Consensus 161 S 161 (506)
T KOG0117|consen 161 S 161 (506)
T ss_pred e
Confidence 4
No 95
>KOG0108|consensus
Probab=99.38 E-value=1.4e-12 Score=111.49 Aligned_cols=77 Identities=25% Similarity=0.471 Sum_probs=73.3
Q ss_pred cEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC---CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEccCC
Q psy4057 12 NFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL---KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTD 88 (246)
Q Consensus 12 ~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~~~ 88 (246)
++|||||+|+++++++|.++|+..|.|.++++..|+ +.+||||++|.+.++|..|++.|||.++.||+|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 999999999999999999999999999999998765 88999999999999999999999999999999999997544
No 96
>KOG0131|consensus
Probab=99.37 E-value=8.9e-13 Score=97.39 Aligned_cols=74 Identities=26% Similarity=0.345 Sum_probs=70.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEee
Q psy4057 170 PNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFA 244 (246)
Q Consensus 170 ~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~a 244 (246)
...+|||+||+..++++.|.++|-+.|+|.++++++++ +||||++|.++|+|.-|++.||.-+++ |++|+|.-|
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLY-grpIrv~ka 86 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLY-GRPIRVNKA 86 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhc-CceeEEEec
Confidence 57899999999999999999999999999999999976 699999999999999999999999999 999999764
No 97
>KOG0108|consensus
Probab=99.33 E-value=3.3e-12 Score=109.18 Aligned_cols=73 Identities=27% Similarity=0.440 Sum_probs=70.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEeec
Q psy4057 172 QILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAK 245 (246)
Q Consensus 172 ~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~ak 245 (246)
+.+||+|+|+++++++|.++|+..|.|.+++++.|+ +||||++|.+.++|..|++.|||.++. |++|+|.|+.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~-gr~l~v~~~~ 96 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFN-GRKLRVNYAS 96 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccC-CceEEeeccc
Confidence 999999999999999999999999999999999987 689999999999999999999999999 9999999975
No 98
>KOG0126|consensus
Probab=99.32 E-value=1.5e-13 Score=101.43 Aligned_cols=76 Identities=21% Similarity=0.423 Sum_probs=71.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEE
Q psy4057 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKI 241 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v 241 (246)
....+.-|||+|||+.+|+.+|--+|++||+|++|.+++|. +||||+-|++..+...|+..|||..|. |+.|+|
T Consensus 31 ~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~-gRtirV 109 (219)
T KOG0126|consen 31 EYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKIL-GRTIRV 109 (219)
T ss_pred hcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceec-ceeEEe
Confidence 44568899999999999999999999999999999999987 689999999999999999999999999 999999
Q ss_pred Ee
Q psy4057 242 SF 243 (246)
Q Consensus 242 ~~ 243 (246)
.-
T Consensus 110 DH 111 (219)
T KOG0126|consen 110 DH 111 (219)
T ss_pred ee
Confidence 63
No 99
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.32 E-value=8.4e-12 Score=101.98 Aligned_cols=74 Identities=38% Similarity=0.570 Sum_probs=70.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEeec
Q psy4057 171 NQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAK 245 (246)
Q Consensus 171 ~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~ak 245 (246)
..+|||+|||.++|+++|.++|..||.|..+.+..++ +|+|||+|.+.++|..|+..|+|..|. |++|.|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~-~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELE-GRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeEC-CceeEeeccc
Confidence 7999999999999999999999999999999999875 589999999999999999999999999 9999999853
No 100
>smart00361 RRM_1 RNA recognition motif.
Probab=99.30 E-value=9.9e-12 Score=80.47 Aligned_cols=57 Identities=21% Similarity=0.376 Sum_probs=48.4
Q ss_pred HHHHHHhh----ccCCeeEEE-EccC-----CCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEE
Q psy4057 26 KSLYAIFS----QFGQIMDIV-ALKT-----LKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRI 82 (246)
Q Consensus 26 ~~l~~~F~----~fG~i~~v~-~~~~-----~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v 82 (246)
++|+++|+ +||.|.+|. +..+ +.++|+|||+|.+.++|.+|+..|||..+.|+.|++
T Consensus 3 ~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 3 EDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred hhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 45666666 999999985 3322 568999999999999999999999999999999986
No 101
>KOG0112|consensus
Probab=99.29 E-value=2.6e-12 Score=114.97 Aligned_cols=158 Identities=15% Similarity=0.201 Sum_probs=135.7
Q ss_pred CCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC--CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEc
Q psy4057 8 ICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL--KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYS 85 (246)
Q Consensus 8 ~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~--~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a 85 (246)
...+++||++||...+++.+|+..|..+|.|++|.|-+.. ..-.||||.|.+...+-.|...+.+..|....+++.+.
T Consensus 369 ~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 369 FRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccccccc
Confidence 3468999999999999999999999999999999886653 44478999999999999999989887776556666663
Q ss_pred cCCccccccccCccccccccccCCCCCCCChhHHhhhhhhhHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCC
Q psy4057 86 KTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGV 165 (246)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (246)
..
T Consensus 449 ~~------------------------------------------------------------------------------ 450 (975)
T KOG0112|consen 449 QP------------------------------------------------------------------------------ 450 (975)
T ss_pred cc------------------------------------------------------------------------------
Confidence 11
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCCccEEEEEeCCHHHHHHHHHHhCCCccCCC-CceEEEee
Q psy4057 166 PEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPT-HAMKISFA 244 (246)
Q Consensus 166 ~~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~~g-~~l~v~~a 244 (246)
...+++.+++++|+..+....|.+.|..||.|..|.+-.+. .||+|.|.+...|+.|+..|-|+.|+++ ++++|.||
T Consensus 451 -kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq-~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla 528 (975)
T KOG0112|consen 451 -KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQ-PYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLA 528 (975)
T ss_pred -ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCC-cceeeecccCccchhhHHHHhcCcCCCCCcccccccc
Confidence 23368899999999999999999999999999987776665 6999999999999999999999999853 88999998
Q ss_pred c
Q psy4057 245 K 245 (246)
Q Consensus 245 k 245 (246)
+
T Consensus 529 ~ 529 (975)
T KOG0112|consen 529 S 529 (975)
T ss_pred c
Confidence 5
No 102
>KOG0149|consensus
Probab=99.28 E-value=9.3e-12 Score=95.74 Aligned_cols=72 Identities=19% Similarity=0.249 Sum_probs=62.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEE
Q psy4057 168 QPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKI 241 (246)
Q Consensus 168 ~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v 241 (246)
+..-+.|||+||+-.++.|+|++.|++||+|+++.|+-|+ +|||||+|.+.++|.+|++..|- .|+ ||+-.+
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~p-iId-GR~aNc 85 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNP-IID-GRKANC 85 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCC-ccc-cccccc
Confidence 4457899999999999999999999999999999999987 69999999999999999987655 466 665444
No 103
>KOG0109|consensus
Probab=99.24 E-value=8.3e-12 Score=98.68 Aligned_cols=70 Identities=31% Similarity=0.511 Sum_probs=66.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCCccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEeec
Q psy4057 172 QILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAK 245 (246)
Q Consensus 172 ~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~ak 245 (246)
..|||+|||..+++.+|+.+|++||+|..+.|+++ ||||..++...|.-|++.|||++++ |..|.|+=+|
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN---YgFVHiEdktaaedairNLhgYtLh-g~nInVeaSk 72 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN---YGFVHIEDKTAAEDAIRNLHGYTLH-GVNINVEASK 72 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc---cceEEeecccccHHHHhhcccceec-ceEEEEEecc
Confidence 36899999999999999999999999999999987 8999999999999999999999999 9999998766
No 104
>KOG1365|consensus
Probab=99.24 E-value=4.9e-11 Score=97.66 Aligned_cols=181 Identities=19% Similarity=0.208 Sum_probs=117.1
Q ss_pred CcEEEe--cCCChhhhHHHHHHHhhcc----CCeeEEEEcc--CCCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEE
Q psy4057 11 TNFVYV--THISSTDLKKSLYAIFSQF----GQIMDIVALK--TLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRI 82 (246)
Q Consensus 11 ~~~l~V--~nl~~~~~e~~l~~~F~~f----G~i~~v~~~~--~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v 82 (246)
.+-+.| ++||+++++.++.++|.+- |..+.|..++ |++..|-|||.|.++++|+.|+.+ |...+.-|.|.+
T Consensus 159 ~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIEl 237 (508)
T KOG1365|consen 159 ENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIEL 237 (508)
T ss_pred ccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHH
Confidence 344555 8999999999999999632 2355554443 668889999999999999999983 333444444444
Q ss_pred EEccCCccccccccCccccccccccCCCCCCCChhHHhhhhhhhHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCC--
Q psy4057 83 QYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPM-- 160 (246)
Q Consensus 83 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 160 (246)
..+... +.++..+...+. |..-....|.-+
T Consensus 238 FRSTaa-----------------------------------------------Evqqvlnr~~s~-pLi~~~~sp~~p~~ 269 (508)
T KOG1365|consen 238 FRSTAA-----------------------------------------------EVQQVLNREVSE-PLIPGLTSPLLPGG 269 (508)
T ss_pred HHHhHH-----------------------------------------------HHHHHHHhhccc-cccCCCCCCCCCCC
Confidence 443211 111111111000 000000111100
Q ss_pred CCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceE---EEEeeCC----ccEEEEEeCCHHHHHHHHHHhCCCcc
Q psy4057 161 ATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKE---VRLVPNR----HDIAFVEFENEMQSAAAKLALHGFKI 233 (246)
Q Consensus 161 ~~~~~~~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~---v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g~~i 233 (246)
+..-.+......+|-+++||+..+.|+|.++|..|-.-++ |.++.+. .|-|||+|.+.+.|..|....+.+..
T Consensus 270 p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~m 349 (508)
T KOG1365|consen 270 PARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLM 349 (508)
T ss_pred ccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhc
Confidence 1112223344789999999999999999999998865432 5666655 47899999999999999999888766
Q ss_pred CCCCceEE
Q psy4057 234 TPTHAMKI 241 (246)
Q Consensus 234 ~~g~~l~v 241 (246)
. ++.|.|
T Consensus 350 k-~RYiEv 356 (508)
T KOG1365|consen 350 K-SRYIEV 356 (508)
T ss_pred c-cceEEE
Confidence 5 677766
No 105
>KOG0129|consensus
Probab=99.24 E-value=3.3e-10 Score=96.31 Aligned_cols=174 Identities=19% Similarity=0.190 Sum_probs=116.4
Q ss_pred CCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC-----CCcc---EEEEEEcCHHHHHHHHHHhcCCccCCee
Q psy4057 8 ICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL-----KMRG---QAFVIFKEIASATNALRSMQGFPFYDKP 79 (246)
Q Consensus 8 ~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~-----~~kg---~aFV~f~~~~~A~~Ai~~lng~~~~g~~ 79 (246)
..-++.||||+||.+++|+.|...|..||.+..=.-.+.. ..+| |+|+.|+++.+++.-+..+.- ....
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~~~~ 332 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---GEGN 332 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---cccc
Confidence 3457899999999999999999999999976432211111 4556 999999999999887665432 2222
Q ss_pred EEEEEccCCc-cccccccCccccccccccCCCCCCCChhHHhhhhhhhHHHHHHHHHHHHHHHhcccccCCCCCCCCCCC
Q psy4057 80 MRIQYSKTDS-DVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPA 158 (246)
Q Consensus 80 l~v~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (246)
+.+..+.+.. +. ......|+.....--
T Consensus 333 ~yf~vss~~~k~k------------------------------------------------~VQIrPW~laDs~fv---- 360 (520)
T KOG0129|consen 333 YYFKVSSPTIKDK------------------------------------------------EVQIRPWVLADSDFV---- 360 (520)
T ss_pred eEEEEecCccccc------------------------------------------------ceeEEeeEeccchhh----
Confidence 2222221110 00 000000000000000
Q ss_pred CCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHc-cCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHH----h
Q psy4057 159 PMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFN-QFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLA----L 228 (246)
Q Consensus 159 ~~~~~~~~~~~~~~~l~v~nL~~~~t~e~l~~~f~-~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~----l 228 (246)
........+.+|+||++||.-++-++|..+|+ -||.|..+-|-.|+ +|-|=|.|.+..+=.+||.+ |
T Consensus 361 ---~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsarFvql 437 (520)
T KOG0129|consen 361 ---LDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISARFVQL 437 (520)
T ss_pred ---hccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhhheEEE
Confidence 00112344799999999999999999999999 89999999888884 68899999999999999886 5
Q ss_pred CCCccCCCCceEE
Q psy4057 229 HGFKITPTHAMKI 241 (246)
Q Consensus 229 ~g~~i~~g~~l~v 241 (246)
+..+|+ +++.|
T Consensus 438 ~h~d~~--KRVEI 448 (520)
T KOG0129|consen 438 DHTDID--KRVEI 448 (520)
T ss_pred eccccc--eeeee
Confidence 666666 45555
No 106
>smart00361 RRM_1 RNA recognition motif.
Probab=99.21 E-value=4.7e-11 Score=77.27 Aligned_cols=57 Identities=16% Similarity=0.273 Sum_probs=48.8
Q ss_pred HHHHHHHHc----cCCCceEEE-EeeC-------CccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEE
Q psy4057 185 EMMLSMLFN----QFPGFKEVR-LVPN-------RHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKIS 242 (246)
Q Consensus 185 ~e~l~~~f~----~~G~i~~v~-~~~~-------~~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~ 242 (246)
+++|+++|+ .||.|.++. ++.+ .+|+|||+|.+.++|..|+..|||+.+. |+.|+++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~-gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFD-GRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEEC-CEEEEeC
Confidence 577888888 999999885 4332 2689999999999999999999999999 9998863
No 107
>KOG0132|consensus
Probab=99.20 E-value=3.7e-11 Score=106.16 Aligned_cols=73 Identities=25% Similarity=0.488 Sum_probs=70.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCCccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEeec
Q psy4057 171 NQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAK 245 (246)
Q Consensus 171 ~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~ak 245 (246)
++||||+.|+..+++.+|.++|+.||.|.+|.++..+ +||||.+.++.+|.+|++.|+...+. ++.|+|.||.
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R-~cAfI~M~~RqdA~kalqkl~n~kv~-~k~Iki~Wa~ 493 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPR-GCAFIKMVRRQDAEKALQKLSNVKVA-DKTIKIAWAV 493 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccCC-ceeEEEEeehhHHHHHHHHHhccccc-ceeeEEeeec
Confidence 8999999999999999999999999999999999888 79999999999999999999999999 9999999983
No 108
>KOG0120|consensus
Probab=99.20 E-value=4.8e-11 Score=102.81 Aligned_cols=176 Identities=21% Similarity=0.325 Sum_probs=130.8
Q ss_pred CCcEEEecCCChhhhHHHHHHHhhcc-----------C-CeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccCC
Q psy4057 10 VTNFVYVTHISSTDLKKSLYAIFSQF-----------G-QIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYD 77 (246)
Q Consensus 10 ~~~~l~V~nl~~~~~e~~l~~~F~~f-----------G-~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g 77 (246)
..+.+||++++....++..-.+|..- | .+..+.+ ...+++||++|.+.+.|..|+. +++..+.|
T Consensus 174 q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~---n~~~nfa~ie~~s~~~at~~~~-~~~~~f~g 249 (500)
T KOG0120|consen 174 QARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQL---NLEKNFAFIEFRSISEATEAMA-LDGIIFEG 249 (500)
T ss_pred hhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeee---cccccceeEEecCCCchhhhhc-ccchhhCC
Confidence 46789999999999999988888765 3 2445444 2478999999999999999998 88999999
Q ss_pred eeEEEEEccCCccccccccCccccccccccCCCCCCCChhHHhhhhhhhHHHHHHHHHHHHHHHhcccccCCCCCCCCCC
Q psy4057 78 KPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPP 157 (246)
Q Consensus 78 ~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (246)
+++++..-..... .. . ......+ ...
T Consensus 250 ~~~~~~r~~d~~~-~p--~-------------------------------------------~~~~~~~--------~~~ 275 (500)
T KOG0120|consen 250 RPLKIRRPHDYQP-VP--G-------------------------------------------ITLSPSQ--------LGK 275 (500)
T ss_pred CCceecccccccC-Cc--c-------------------------------------------chhhhcc--------ccc
Confidence 9998865321110 00 0 0000000 000
Q ss_pred CCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCc
Q psy4057 158 APMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFK 232 (246)
Q Consensus 158 ~~~~~~~~~~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~ 232 (246)
..+.............++|+|||..+++++++++...||.+...+++.+. +||||.+|.+......|+..|||..
T Consensus 276 ~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~ 355 (500)
T KOG0120|consen 276 VGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQ 355 (500)
T ss_pred cCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhh
Confidence 00000011122346789999999999999999999999999999988865 6899999999999999999999999
Q ss_pred cCCCCceEEEee
Q psy4057 233 ITPTHAMKISFA 244 (246)
Q Consensus 233 i~~g~~l~v~~a 244 (246)
++ ++.|.|+.|
T Consensus 356 lg-d~~lvvq~A 366 (500)
T KOG0120|consen 356 LG-DKKLVVQRA 366 (500)
T ss_pred hc-CceeEeehh
Confidence 99 899998765
No 109
>KOG0132|consensus
Probab=99.16 E-value=8.7e-11 Score=103.86 Aligned_cols=75 Identities=24% Similarity=0.434 Sum_probs=70.8
Q ss_pred CcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEccCC
Q psy4057 11 TNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTD 88 (246)
Q Consensus 11 ~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~~~ 88 (246)
++|||||+|+..+++.||..+|+.||+|.+|.++. ++++|||.+....+|.+|+.+|+...+.++.|+|.|+...
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~---~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~ 495 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP---PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGK 495 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeecc---CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccC
Confidence 78999999999999999999999999999998865 8899999999999999999999999999999999998543
No 110
>KOG4454|consensus
Probab=99.12 E-value=2e-11 Score=92.85 Aligned_cols=140 Identities=18% Similarity=0.184 Sum_probs=112.6
Q ss_pred CCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC-CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEc
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL-KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYS 85 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~-~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a 85 (246)
.++..++|||+|+...++|+-|.++|.+-|+|.+|.|..+. ....||||.|.++-+...|++-+||..+.++++.|.+-
T Consensus 5 aae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 5 AAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred CcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 56678999999999999999999999999999999887654 22249999999999999999999999999999988873
Q ss_pred cCCccccccccCccccccccccCCCCCCCChhHHhhhhhhhHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCC
Q psy4057 86 KTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGV 165 (246)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (246)
...+.
T Consensus 85 ~G~sh--------------------------------------------------------------------------- 89 (267)
T KOG4454|consen 85 CGNSH--------------------------------------------------------------------------- 89 (267)
T ss_pred cCCCc---------------------------------------------------------------------------
Confidence 21110
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC----ccEEEEEeCCHHHHHHHHHHhCCCc
Q psy4057 166 PEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR----HDIAFVEFENEMQSAAAKLALHGFK 232 (246)
Q Consensus 166 ~~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g~~ 232 (246)
.-|...++.+.+...|+.-|.+..+++..++ +.++|+.|-..-+.-.|+....+..
T Consensus 90 -----------apld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~ 149 (267)
T KOG4454|consen 90 -----------APLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGLE 149 (267)
T ss_pred -----------chhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhcccC
Confidence 0144567888999999999999888888754 3578888877666667777666644
No 111
>KOG0415|consensus
Probab=99.12 E-value=8.4e-11 Score=95.42 Aligned_cols=84 Identities=21% Similarity=0.342 Sum_probs=76.9
Q ss_pred CCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC---CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEE
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL---KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~ 83 (246)
..||.+.|||..|.+-++.++|.-+|+.||.|.+|.++++. -+-.||||+|.+.++...|.=+|++..+.++.|.|.
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVD 314 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVD 314 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEee
Confidence 46899999999999999999999999999999999999986 455899999999999999999999999999999999
Q ss_pred EccCCcc
Q psy4057 84 YSKTDSD 90 (246)
Q Consensus 84 ~a~~~~~ 90 (246)
|+.+-+.
T Consensus 315 FSQSVsk 321 (479)
T KOG0415|consen 315 FSQSVSK 321 (479)
T ss_pred hhhhhhh
Confidence 9865443
No 112
>KOG0153|consensus
Probab=99.09 E-value=3e-10 Score=92.01 Aligned_cols=75 Identities=21% Similarity=0.369 Sum_probs=67.2
Q ss_pred CCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHh-cCCccCCeeEEEEEccC
Q psy4057 10 VTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSM-QGFPFYDKPMRIQYSKT 87 (246)
Q Consensus 10 ~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~l-ng~~~~g~~l~v~~a~~ 87 (246)
...+|||++|...++|.+|++.|.+||+|++|.+.. .+++|||+|.+.++|+.|.+++ |.+.+.|++|.|.|+.+
T Consensus 227 ~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~---~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 227 SIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILP---RKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred ceeEEEecccccchhHHHHHHHHhhcCCeeeEEeec---ccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 468999999999999999999999999999998865 5679999999999999988765 55677999999999876
No 113
>KOG0146|consensus
Probab=99.09 E-value=1.3e-10 Score=91.09 Aligned_cols=82 Identities=22% Similarity=0.317 Sum_probs=75.1
Q ss_pred CCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC---CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEE
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL---KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~ 83 (246)
+.|.++.|||-.||.+....+|...|-+||.|.+.++.-|+ .+|.|+||.|.|+.+|+.||..|||+.|.=++|+|+
T Consensus 281 eGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQ 360 (371)
T KOG0146|consen 281 EGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQ 360 (371)
T ss_pred cCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhh
Confidence 56788999999999999999999999999999999888665 799999999999999999999999999999999998
Q ss_pred EccCC
Q psy4057 84 YSKTD 88 (246)
Q Consensus 84 ~a~~~ 88 (246)
+-+++
T Consensus 361 LKRPk 365 (371)
T KOG0146|consen 361 LKRPK 365 (371)
T ss_pred hcCcc
Confidence 85443
No 114
>KOG0153|consensus
Probab=99.09 E-value=3.9e-10 Score=91.37 Aligned_cols=77 Identities=22% Similarity=0.397 Sum_probs=68.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCCccEEEEEeCCHHHHHHHHHHh-CCCccCCCCceEEEeec
Q psy4057 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLAL-HGFKITPTHAMKISFAK 245 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l-~g~~i~~g~~l~v~~ak 245 (246)
.....++|||+||-..+++.+|++.|.+||+|+.++++..+ ++|||+|.+.++|..|...+ |...|+ |.+|.|.|++
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~-~CAFv~ftTR~aAE~Aae~~~n~lvI~-G~Rl~i~Wg~ 301 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK-GCAFVTFTTREAAEKAAEKSFNKLVIN-GFRLKIKWGR 301 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc-ccceeeehhhHHHHHHHHhhcceeeec-ceEEEEEeCC
Confidence 34458999999999899999999999999999999999988 69999999999999987775 555677 9999999985
No 115
>KOG1457|consensus
Probab=99.07 E-value=1.6e-09 Score=82.91 Aligned_cols=76 Identities=28% Similarity=0.475 Sum_probs=67.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC------ccEEEEEeCCHHHHHHHHHHhCCCccCC--CCceEE
Q psy4057 170 PNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR------HDIAFVEFENEMQSAAAKLALHGFKITP--THAMKI 241 (246)
Q Consensus 170 ~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~------~g~afV~f~~~~~A~~Al~~l~g~~i~~--g~~l~v 241 (246)
.-++|||.+||.++..-+|..+|.+|...+...+.... +.+||+.|.+..+|..|+..|||.+|+. +.+|+|
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 48999999999999999999999999888766665533 2489999999999999999999999975 689999
Q ss_pred Eeec
Q psy4057 242 SFAK 245 (246)
Q Consensus 242 ~~ak 245 (246)
++||
T Consensus 113 ElAK 116 (284)
T KOG1457|consen 113 ELAK 116 (284)
T ss_pred eehh
Confidence 9997
No 116
>KOG0415|consensus
Probab=99.06 E-value=2.7e-10 Score=92.55 Aligned_cols=78 Identities=24% Similarity=0.519 Sum_probs=73.0
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCCc-----cEEEEEeCCHHHHHHHHHHhCCCccCCCCceE
Q psy4057 166 PEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRH-----DIAFVEFENEMQSAAAKLALHGFKITPTHAMK 240 (246)
Q Consensus 166 ~~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~~-----g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~ 240 (246)
...||..+|||+-|.+-+|+|+|.-+|++||.|..+.++++.+ .||||+|.+.++..+|.-.|++.-|+ .++|.
T Consensus 234 d~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLID-DrRIH 312 (479)
T KOG0415|consen 234 DVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLID-DRRIH 312 (479)
T ss_pred ccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeec-cceEE
Confidence 3567899999999999999999999999999999999999884 49999999999999999999999999 89999
Q ss_pred EEee
Q psy4057 241 ISFA 244 (246)
Q Consensus 241 v~~a 244 (246)
|.|+
T Consensus 313 VDFS 316 (479)
T KOG0415|consen 313 VDFS 316 (479)
T ss_pred eehh
Confidence 9986
No 117
>KOG4208|consensus
Probab=99.04 E-value=9.6e-10 Score=83.17 Aligned_cols=82 Identities=22% Similarity=0.342 Sum_probs=72.1
Q ss_pred CCCCCcEEEecCCChhhhHHHHHHHhhcc-CCeeEEEEcc---CCCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEE
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLYAIFSQF-GQIMDIVALK---TLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRI 82 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~~~F~~f-G~i~~v~~~~---~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v 82 (246)
...+...+||..+|....+.++..+|.+| |.+..+++.| +|.|+|||||+|.+++.|..|-+.||+.-+.|+-|.|
T Consensus 45 ~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c 124 (214)
T KOG4208|consen 45 EQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLEC 124 (214)
T ss_pred ccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeee
Confidence 34456788999999999999999999999 7777777755 4589999999999999999999999999999999999
Q ss_pred EEccCC
Q psy4057 83 QYSKTD 88 (246)
Q Consensus 83 ~~a~~~ 88 (246)
.+-.+.
T Consensus 125 ~vmppe 130 (214)
T KOG4208|consen 125 HVMPPE 130 (214)
T ss_pred EEeCch
Confidence 997544
No 118
>KOG4660|consensus
Probab=98.98 E-value=5e-10 Score=96.00 Aligned_cols=176 Identities=21% Similarity=0.234 Sum_probs=113.8
Q ss_pred CCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEccC
Q psy4057 8 ICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKT 87 (246)
Q Consensus 8 ~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~~ 87 (246)
-.+.++|+|.|||..+++++|+.+|+.||+|..|+. +...+|..||+|-+..+|+.|+.+|++..+.|+.|.......
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~--t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~~~~ 149 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE--TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIKRPGGAR 149 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc--ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCCccc
Confidence 456899999999999999999999999999999643 335779999999999999999999999999999988222111
Q ss_pred CccccccccCccccccccccCCCCCCCChhHHhhhhhhhHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCCCC
Q psy4057 88 DSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPE 167 (246)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (246)
... .. ..+... ......+.+......
T Consensus 150 ~~~----~~--------------------------------------------~~~~~~------~~~~~~p~a~s~pgg 175 (549)
T KOG4660|consen 150 RAM----GL--------------------------------------------QSGTSF------LNHFGSPLANSPPGG 175 (549)
T ss_pred ccc----hh--------------------------------------------cccchh------hhhccchhhcCCCCC
Confidence 100 00 000000 000000000011111
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCCccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEee
Q psy4057 168 QPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFA 244 (246)
Q Consensus 168 ~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~a 244 (246)
.+....+.+ |++..+...+.-.++.+|.+.. +-..--+-.-|++|.+..++..+...+ |..+. +....+.++
T Consensus 176 ~~~~~~~g~--l~P~~s~~~~~~~~~~~~~~~~-~~~~~~~hq~~~~~~~~~s~a~~~~~~-G~~~s-~~~~v~t~S 247 (549)
T KOG4660|consen 176 WPRGQLFGM--LSPTRSSILLEHISSVDGSSPG-RETPLLNHQRFVEFADNRSYAFSEPRG-GFLIS-NSSGVITFS 247 (549)
T ss_pred CcCCcceee--eccchhhhhhhcchhccCcccc-ccccchhhhhhhhhccccchhhcccCC-ceecC-CCCceEEec
Confidence 222333333 8888888888888888898865 433322225677787777776665544 66666 555555554
No 119
>KOG4676|consensus
Probab=98.97 E-value=5.8e-10 Score=91.65 Aligned_cols=197 Identities=14% Similarity=0.120 Sum_probs=128.2
Q ss_pred CCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC------CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEE
Q psy4057 9 CVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL------KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRI 82 (246)
Q Consensus 9 ~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v 82 (246)
.....|.|.||.+..+.++++.+|.-.|.|..+.++.+. -....|||-|.+..++..|.+ |-++.|-|+-|.|
T Consensus 5 ~~~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv 83 (479)
T KOG4676|consen 5 SSLGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIV 83 (479)
T ss_pred CCCceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEE
Confidence 344589999999999999999999999999999988743 234789999999999999998 8889999999988
Q ss_pred EEccCCc--ccccc---ccCccccccccccCCCCCCCChhHHhhhhhhhHHHHHHHHHHHHHHHhcccccCCCCCCCCCC
Q psy4057 83 QYSKTDS--DVISK---IKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPP 157 (246)
Q Consensus 83 ~~a~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (246)
....... +.... ..++.+......+..-..+ . ++ ....-.|.+.-..|+
T Consensus 84 ~p~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~----------~---------------~l-t~~nh~p~ailktP~ 137 (479)
T KOG4676|consen 84 RPYGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGD----------R---------------PL-TKINHSPNAILKTPE 137 (479)
T ss_pred EecCCCCCccHHHHHhcCcccccccccCCCCccCCC----------C---------------cc-ccccCCccceecCCC
Confidence 7653221 11000 0001110000000000000 0 00 000000111111122
Q ss_pred CCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-ccEEEEEeCCHHHHHHHHHHhCCCcc
Q psy4057 158 APMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-HDIAFVEFENEMQSAAAKLALHGFKI 233 (246)
Q Consensus 158 ~~~~~~~~~~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-~g~afV~f~~~~~A~~Al~~l~g~~i 233 (246)
.+++..........++++|++|+..+...++..+|..+|+|...++..+. ..+|.++|....+...|++ ++|+.+
T Consensus 138 Lp~~~~A~kleeirRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr-~~gre~ 213 (479)
T KOG4676|consen 138 LPPQAAAKKLEEIRRTREVQSLISAAILPESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALR-SHGRER 213 (479)
T ss_pred CChHhhhhhhHHHHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHH-hcchhh
Confidence 22222222333346899999999999999999999999999888877754 4578899999888888876 566554
No 120
>KOG4660|consensus
Probab=98.94 E-value=1.2e-09 Score=93.80 Aligned_cols=72 Identities=29% Similarity=0.419 Sum_probs=67.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCCccEEEEEeCCHHHHHHHHHHhCCCccCCCCceE
Q psy4057 168 QPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMK 240 (246)
Q Consensus 168 ~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~ 240 (246)
..+..+|+|-|||..+++++|+.+|+.||+|+.|+-.+...|..||+|.|..+|++|+++|++.+|. |+.|+
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~-~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIA-GKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhh-hhhhc
Confidence 4568999999999999999999999999999999999988899999999999999999999999999 77765
No 121
>KOG4661|consensus
Probab=98.92 E-value=2.8e-09 Score=91.65 Aligned_cols=79 Identities=19% Similarity=0.330 Sum_probs=72.3
Q ss_pred CCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC---CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEc
Q psy4057 9 CVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL---KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYS 85 (246)
Q Consensus 9 ~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a 85 (246)
.-++.|||.+|+..+.-.+|+.+|++||.|+-.+++.+- ..+.|+||++.+.++|.+||+.|+.+.|+|+-|.|..+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 457889999999999999999999999999998888654 56789999999999999999999999999999999998
Q ss_pred cC
Q psy4057 86 KT 87 (246)
Q Consensus 86 ~~ 87 (246)
+.
T Consensus 483 KN 484 (940)
T KOG4661|consen 483 KN 484 (940)
T ss_pred cc
Confidence 64
No 122
>KOG4661|consensus
Probab=98.89 E-value=3.4e-09 Score=91.12 Aligned_cols=75 Identities=19% Similarity=0.279 Sum_probs=69.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEee
Q psy4057 170 PNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFA 244 (246)
Q Consensus 170 ~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~a 244 (246)
-++.|||.+|...+.--+|+++|++||.|+-.+|+.+. +.||||++.+.++|.+||+.||-++++ |+.|.|.-|
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELH-GrmISVEka 482 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELH-GRMISVEKA 482 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhc-ceeeeeeec
Confidence 47899999999888888999999999999999999865 579999999999999999999999999 999999887
Q ss_pred c
Q psy4057 245 K 245 (246)
Q Consensus 245 k 245 (246)
|
T Consensus 483 K 483 (940)
T KOG4661|consen 483 K 483 (940)
T ss_pred c
Confidence 6
No 123
>KOG4210|consensus
Probab=98.87 E-value=2.8e-09 Score=87.22 Aligned_cols=168 Identities=15% Similarity=0.124 Sum_probs=127.1
Q ss_pred CCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEcc---CCCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEcc
Q psy4057 10 VTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALK---TLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSK 86 (246)
Q Consensus 10 ~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~---~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~ 86 (246)
...++|++++.....+.+...++...|......+.. ...++|++.+.|...+.+..|+.........+..+......
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 367889999999999988889999999776664443 33889999999999999999999443345555554444432
Q ss_pred CCccccccccCccccccccccCCCCCCCChhHHhhhhhhhHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCCC
Q psy4057 87 TDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVP 166 (246)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (246)
..... ..+ + .....
T Consensus 167 ~~~~~---~~n------------------------------------------~---------------------~~~~~ 180 (285)
T KOG4210|consen 167 RRGLR---PKN------------------------------------------K---------------------LSRLS 180 (285)
T ss_pred ccccc---ccc------------------------------------------h---------------------hcccc
Confidence 22100 000 0 01122
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEE
Q psy4057 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKI 241 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v 241 (246)
..+..+.++|.||++++++++|+..|..+|.|..+++..++ .|+|+|.|.+...+..|+.. +...++ ++++.+
T Consensus 181 ~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~ 258 (285)
T KOG4210|consen 181 SGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIG-GRPLRL 258 (285)
T ss_pred cCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCccc-Cccccc
Confidence 34456666699999999999999999999999999999976 57999999999999999887 778888 899998
Q ss_pred Eeec
Q psy4057 242 SFAK 245 (246)
Q Consensus 242 ~~ak 245 (246)
.+.+
T Consensus 259 ~~~~ 262 (285)
T KOG4210|consen 259 EEDE 262 (285)
T ss_pred ccCC
Confidence 8764
No 124
>KOG0226|consensus
Probab=98.87 E-value=3.1e-09 Score=82.84 Aligned_cols=141 Identities=18% Similarity=0.334 Sum_probs=109.2
Q ss_pred HHHhhccCCeeEEEEccCC--CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEccCCccccccccCccccccccc
Q psy4057 29 YAIFSQFGQIMDIVALKTL--KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKV 106 (246)
Q Consensus 29 ~~~F~~fG~i~~v~~~~~~--~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~ 106 (246)
...|+-+-.+....+.++. ..++++|+.|.....-.++-..-++..+.-+++++.-...-
T Consensus 117 ~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gtsw------------------ 178 (290)
T KOG0226|consen 117 PVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTSW------------------ 178 (290)
T ss_pred hhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeecccccc------------------
Confidence 5778888777777777776 56699999999888877777766666665555444332111
Q ss_pred cCCCCCCCChhHHhhhhhhhHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCCCCCCCCcEEEEcCCCCCCCHH
Q psy4057 107 RKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEM 186 (246)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~t~e 186 (246)
+-|. -..-....-.||.+-|..+++++
T Consensus 179 ----------------------------------------edPs-------------l~ew~~~DfRIfcgdlgNevnd~ 205 (290)
T KOG0226|consen 179 ----------------------------------------EDPS-------------LAEWDEDDFRIFCGDLGNEVNDD 205 (290)
T ss_pred ----------------------------------------CCcc-------------cccCccccceeecccccccccHH
Confidence 1111 11122347789999999999999
Q ss_pred HHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEE
Q psy4057 187 MLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKI 241 (246)
Q Consensus 187 ~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v 241 (246)
.|.+.|.+|......+++++. +||+||.|.+..++..|+..|||.-++ +++|++
T Consensus 206 vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVg-srpikl 264 (290)
T KOG0226|consen 206 VLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVG-SRPIKL 264 (290)
T ss_pred HHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccc-cchhHh
Confidence 999999999999999999976 589999999999999999999999999 888765
No 125
>KOG4208|consensus
Probab=98.87 E-value=9.7e-09 Score=77.81 Aligned_cols=76 Identities=25% Similarity=0.412 Sum_probs=68.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHccC-CCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceE
Q psy4057 167 EQPPNQILFLTNLPEETSEMMLSMLFNQF-PGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMK 240 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~~t~e~l~~~f~~~-G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~ 240 (246)
.......+++..+|..+.+-.+...|.+| |.+.++++.+++ +|||||+|++.+.|.-|-+.||++-+. ++.|.
T Consensus 45 ~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~-e~lL~ 123 (214)
T KOG4208|consen 45 EQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLM-EHLLE 123 (214)
T ss_pred ccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhh-hheee
Confidence 45568889999999999999999999999 777888887765 589999999999999999999999999 89998
Q ss_pred EEe
Q psy4057 241 ISF 243 (246)
Q Consensus 241 v~~ 243 (246)
+.|
T Consensus 124 c~v 126 (214)
T KOG4208|consen 124 CHV 126 (214)
T ss_pred eEE
Confidence 876
No 126
>KOG0151|consensus
Probab=98.85 E-value=7.9e-09 Score=90.93 Aligned_cols=78 Identities=26% Similarity=0.417 Sum_probs=71.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC--------ccEEEEEeCCHHHHHHHHHHhCCCccCCCCc
Q psy4057 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR--------HDIAFVEFENEMQSAAAKLALHGFKITPTHA 238 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~--------~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~ 238 (246)
..|..+.|||+||+++++++.|...|++||+|..++++--+ +.||||-|-+..+|.+|+..|+|..+. +..
T Consensus 170 gDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~-~~e 248 (877)
T KOG0151|consen 170 GDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVM-EYE 248 (877)
T ss_pred CCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeee-eee
Confidence 36779999999999999999999999999999888887643 469999999999999999999999999 999
Q ss_pred eEEEeec
Q psy4057 239 MKISFAK 245 (246)
Q Consensus 239 l~v~~ak 245 (246)
|++.|+|
T Consensus 249 ~K~gWgk 255 (877)
T KOG0151|consen 249 MKLGWGK 255 (877)
T ss_pred eeecccc
Confidence 9999987
No 127
>KOG2193|consensus
Probab=98.83 E-value=4.1e-10 Score=93.45 Aligned_cols=146 Identities=18% Similarity=0.266 Sum_probs=119.0
Q ss_pred cEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC---CCccEEEEEEcCHHHHHHHHHHhcC-CccCCeeEEEEEccC
Q psy4057 12 NFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL---KMRGQAFVIFKEIASATNALRSMQG-FPFYDKPMRIQYSKT 87 (246)
Q Consensus 12 ~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng-~~~~g~~l~v~~a~~ 87 (246)
+.+|++||.+.++..+|..+|..-- +.-.+ --.|||||.+.+...|.+|++.++| ..+.|+++.+.++-.
T Consensus 2 nklyignL~p~~~psdl~svfg~ak------~~~~g~fl~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAK------IPGSGQFLVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhcccc------CCCCcceeeecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 5689999999999999999997652 11111 1239999999999999999999999 668999999988644
Q ss_pred CccccccccCccccccccccCCCCCCCChhHHhhhhhhhHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCCCC
Q psy4057 88 DSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPE 167 (246)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (246)
+..
T Consensus 76 kkq----------------------------------------------------------------------------- 78 (584)
T KOG2193|consen 76 KKQ----------------------------------------------------------------------------- 78 (584)
T ss_pred HHH-----------------------------------------------------------------------------
Confidence 421
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCCccE--EEEEeCCHHHHHHHHHHhCCCccCCCCceEEEe
Q psy4057 168 QPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDI--AFVEFENEMQSAAAKLALHGFKITPTHAMKISF 243 (246)
Q Consensus 168 ~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~~g~--afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~ 243 (246)
.++.+-++|+|+...++.|..+..+||.+..+-.+.-.... .=|+|.+.+.+..|+..|||..+. +..++|.|
T Consensus 79 --rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~e-n~~~k~~Y 153 (584)
T KOG2193|consen 79 --RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLE-NQHLKVGY 153 (584)
T ss_pred --HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhh-hhhhhccc
Confidence 24457799999999999999999999999887776544222 335689999999999999999999 88888887
No 128
>KOG0533|consensus
Probab=98.83 E-value=2e-08 Score=79.60 Aligned_cols=80 Identities=21% Similarity=0.354 Sum_probs=72.1
Q ss_pred CCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC--CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEccC
Q psy4057 10 VTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL--KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKT 87 (246)
Q Consensus 10 ~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~--~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~~ 87 (246)
-..+|+|.||++.++.+||.++|..||.+..+.+..+. ++.|.|-|.|...++|..|++.+||..+.|++|.+..+..
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~ 161 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISS 161 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecC
Confidence 34789999999999999999999999999988887654 7889999999999999999999999999999999988755
Q ss_pred Cc
Q psy4057 88 DS 89 (246)
Q Consensus 88 ~~ 89 (246)
.+
T Consensus 162 ~~ 163 (243)
T KOG0533|consen 162 PS 163 (243)
T ss_pred cc
Confidence 43
No 129
>KOG4211|consensus
Probab=98.78 E-value=1.6e-07 Score=79.80 Aligned_cols=208 Identities=15% Similarity=0.132 Sum_probs=113.5
Q ss_pred CCcEEEecCCChhhhHHHHHHHhhccCCeeE-EEEccCC--CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEcc
Q psy4057 10 VTNFVYVTHISSTDLKKSLYAIFSQFGQIMD-IVALKTL--KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSK 86 (246)
Q Consensus 10 ~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~-v~~~~~~--~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~ 86 (246)
+...|-+.+||+.|+++||.++|+..-.+.. |.+.-+. ++.|-|||+|++.+.|++|+. -|...+.-|-|.|..+.
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~-rhre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALG-RHRENIGHRYIEVFRSS 180 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHH-HHHHhhccceEEeehhH
Confidence 3457888999999999999999998876655 3333333 677999999999999999998 45567777888887763
Q ss_pred CCccccccccC--cccccccccc--C--CCCCCCChhHHhhhhhhhHHHHHHHHHHHHHHHhcc---cccC------CCC
Q psy4057 87 TDSDVISKIKG--TFMERPKKVR--K--QPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQAL---SVQQ------PPV 151 (246)
Q Consensus 87 ~~~~~~~~~~~--~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~------~~~ 151 (246)
... ....... ....++...+ . +...+...... .... ..+.. +.....-++ .... ...
T Consensus 181 ~~e-~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~-~~~~---~~r~g---~~~~g~~g~~~~~~~~d~~~~gs~~ 252 (510)
T KOG4211|consen 181 RAE-VKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRD-PGRN---ATRYG---AGGEGYYGFSRYPSLQDYGNFGSYG 252 (510)
T ss_pred HHH-HHhhccccccccCCCCccccccCCccccccccccC-CCcc---ccccc---cccCCccccccCccccccccccccc
Confidence 221 1110000 0000000000 0 11001000000 0000 00000 000000000 0000 000
Q ss_pred CCC--CCCCC-------CCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHccCCCc-eEEEEeeCC--ccEEEEEeCCHH
Q psy4057 152 SQP--APPAP-------MATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGF-KEVRLVPNR--HDIAFVEFENEM 219 (246)
Q Consensus 152 ~~~--~~~~~-------~~~~~~~~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i-~~v~~~~~~--~g~afV~f~~~~ 219 (246)
... ..+.. .+.......+....+..++||++.+..++.+.|+..-.+ ..|.+-++. .|-|+|+|.+.+
T Consensus 253 ~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~~v~i~ig~dGr~TGEAdveF~t~e 332 (510)
T KOG4211|consen 253 GGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPYRVHIEIGPDGRATGEADVEFATGE 332 (510)
T ss_pred cccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCceeEEEEeCCCCccCCcceeecccch
Confidence 000 00000 001111122234788889999999999999999987666 444444443 478999999999
Q ss_pred HHHHHHH
Q psy4057 220 QSAAAKL 226 (246)
Q Consensus 220 ~A~~Al~ 226 (246)
+|..|+.
T Consensus 333 dav~Ams 339 (510)
T KOG4211|consen 333 DAVGAMG 339 (510)
T ss_pred hhHhhhc
Confidence 9999975
No 130
>KOG0128|consensus
Probab=98.76 E-value=8.2e-10 Score=98.84 Aligned_cols=130 Identities=19% Similarity=0.225 Sum_probs=109.5
Q ss_pred CcEEEecCCChhhhHHHHHHHhhccCCeeEEEEc---cCCCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEccC
Q psy4057 11 TNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVAL---KTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKT 87 (246)
Q Consensus 11 ~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~---~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~~ 87 (246)
..++||.||+..+.+.+|...|.++|.++.+.+. ..++.+|+|++.|..+++|.+|+.-. ...+.|
T Consensus 667 ~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~-d~~~~g---------- 735 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFR-DSCFFG---------- 735 (881)
T ss_pred HHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhh-hhhhhh----------
Confidence 3578999999999999999999999998887665 23378899999999999999999833 222222
Q ss_pred CccccccccCccccccccccCCCCCCCChhHHhhhhhhhHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCCCC
Q psy4057 88 DSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPE 167 (246)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (246)
T Consensus 736 -------------------------------------------------------------------------------- 735 (881)
T KOG0128|consen 736 -------------------------------------------------------------------------------- 735 (881)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC----ccEEEEEeCCHHHHHHHHHHhCCCccC
Q psy4057 168 QPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR----HDIAFVEFENEMQSAAAKLALHGFKIT 234 (246)
Q Consensus 168 ~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g~~i~ 234 (246)
...|+|+|+|+..|.++|+.+|+.+|.+.+++++..+ +|.|+|.|.+..+|..+...+++..+-
T Consensus 736 ---K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~r 803 (881)
T KOG0128|consen 736 ---KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKR 803 (881)
T ss_pred ---hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhh
Confidence 2337899999999999999999999999999887755 578999999999999998888776654
No 131
>KOG0533|consensus
Probab=98.74 E-value=5.6e-08 Score=77.05 Aligned_cols=76 Identities=24% Similarity=0.313 Sum_probs=68.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCCc----cEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEE
Q psy4057 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRH----DIAFVEFENEMQSAAAKLALHGFKITPTHAMKIS 242 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~~----g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~ 242 (246)
.......|+|.|||+.|++++|+++|..||.+..+-+..++. |.|=|.|...++|..|++.+||..++ |++|++.
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ld-G~~mk~~ 157 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALD-GRPMKIE 157 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccC-CceeeeE
Confidence 344568899999999999999999999999999999999873 69999999999999999999998888 8998886
Q ss_pred e
Q psy4057 243 F 243 (246)
Q Consensus 243 ~ 243 (246)
.
T Consensus 158 ~ 158 (243)
T KOG0533|consen 158 I 158 (243)
T ss_pred E
Confidence 5
No 132
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.71 E-value=1.1e-07 Score=61.74 Aligned_cols=69 Identities=22% Similarity=0.382 Sum_probs=46.9
Q ss_pred cEEEEcCCCCCCCHHH----HHHHHccCCCceEEEEeeCCccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEeec
Q psy4057 172 QILFLTNLPEETSEMM----LSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAK 245 (246)
Q Consensus 172 ~~l~v~nL~~~~t~e~----l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~ak 245 (246)
..|+|.|||.+.+... |++++..+|. +-+.+. .+.|+|.|.+.+.|.+|...|+|-.+. |..|.|+|.+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGG-kVl~v~---~~tAilrF~~~~~A~RA~KRmegEdVf-G~kI~v~~~~ 75 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGG-KVLSVS---GGTAILRFPNQEFAERAQKRMEGEDVF-GNKISVSFSP 75 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT---EEE-----TT-EEEEESSHHHHHHHHHHHTT--SS-SS--EEESS-
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCC-EEEEEe---CCEEEEEeCCHHHHHHHHHhhcccccc-cceEEEEEcC
Confidence 4689999999888764 5567777766 223332 267999999999999999999999999 9999999974
No 133
>KOG4205|consensus
Probab=98.71 E-value=1.9e-08 Score=82.78 Aligned_cols=80 Identities=20% Similarity=0.323 Sum_probs=71.7
Q ss_pred CCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC---CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEc
Q psy4057 9 CVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL---KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYS 85 (246)
Q Consensus 9 ~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a 85 (246)
....++||++||.++++++|+++|.+||.|..+.++.|. +.+||+||+|.+++++.+++. ..-+.|.|+.+.|..|
T Consensus 95 ~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA 173 (311)
T KOG4205|consen 95 LRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRA 173 (311)
T ss_pred cceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeec
Confidence 356799999999999999999999999999999888765 788999999999999999988 6678899999999998
Q ss_pred cCCc
Q psy4057 86 KTDS 89 (246)
Q Consensus 86 ~~~~ 89 (246)
.++.
T Consensus 174 ~pk~ 177 (311)
T KOG4205|consen 174 IPKE 177 (311)
T ss_pred cchh
Confidence 7654
No 134
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.66 E-value=2.3e-07 Score=63.15 Aligned_cols=74 Identities=20% Similarity=0.316 Sum_probs=62.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHHccC--CCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccC---CCCceEE
Q psy4057 172 QILFLTNLPEETSEMMLSMLFNQF--PGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKIT---PTHAMKI 241 (246)
Q Consensus 172 ~~l~v~nL~~~~t~e~l~~~f~~~--G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~---~g~~l~v 241 (246)
++|-|+|+|...|+++|.+++... |...-+.++-|- .|||||.|.+.+.|..-.+.++|+... ..+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 689999999999999999887543 666666666653 489999999999999999999998764 2588999
Q ss_pred Eeec
Q psy4057 242 SFAK 245 (246)
Q Consensus 242 ~~ak 245 (246)
+||+
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 9986
No 135
>KOG4454|consensus
Probab=98.62 E-value=1.7e-08 Score=77.12 Aligned_cols=75 Identities=23% Similarity=0.242 Sum_probs=68.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC---ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEe
Q psy4057 168 QPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR---HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISF 243 (246)
Q Consensus 168 ~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~---~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~ 243 (246)
.+..++|||.|+...+++|-|.++|-+-|+|.+|.|..++ ..||||.|.++.+..-|++.|||-.+. +..++|.+
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~-~~e~q~~~ 83 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLE-EDEEQRTL 83 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhc-cchhhccc
Confidence 3468999999999999999999999999999999999876 249999999999999999999999999 88888865
No 136
>KOG0151|consensus
Probab=98.60 E-value=8.5e-08 Score=84.62 Aligned_cols=79 Identities=25% Similarity=0.396 Sum_probs=71.4
Q ss_pred CCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEcc--CC----CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEE
Q psy4057 9 CVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALK--TL----KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRI 82 (246)
Q Consensus 9 ~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~--~~----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v 82 (246)
|-+..|||+||++.++++.|-..|..||+|-.|+++- +. +.+.+|||.|-+..+|++|+..|+|..+.+..|++
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~ 251 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKL 251 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeee
Confidence 4467899999999999999999999999999998873 22 56789999999999999999999999999999999
Q ss_pred EEccC
Q psy4057 83 QYSKT 87 (246)
Q Consensus 83 ~~a~~ 87 (246)
.|++.
T Consensus 252 gWgk~ 256 (877)
T KOG0151|consen 252 GWGKA 256 (877)
T ss_pred ccccc
Confidence 99854
No 137
>KOG1548|consensus
Probab=98.58 E-value=2.2e-07 Score=75.64 Aligned_cols=75 Identities=13% Similarity=0.166 Sum_probs=67.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHccCCCc--------eEEEEeeCC----ccEEEEEeCCHHHHHHHHHHhCCCccCCCC
Q psy4057 170 PNQILFLTNLPEETSEMMLSMLFNQFPGF--------KEVRLVPNR----HDIAFVEFENEMQSAAAKLALHGFKITPTH 237 (246)
Q Consensus 170 ~~~~l~v~nL~~~~t~e~l~~~f~~~G~i--------~~v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~ 237 (246)
.++.|||.|||.++|.+++..+|+.+|.| -.|+|.++. +|-|.+.|-..++...|+..|++..+. |+
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r-g~ 211 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELR-GK 211 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCccccc-Cc
Confidence 47889999999999999999999999999 356777765 578999999999999999999999999 99
Q ss_pred ceEEEeec
Q psy4057 238 AMKISFAK 245 (246)
Q Consensus 238 ~l~v~~ak 245 (246)
.|+|+-||
T Consensus 212 ~~rVerAk 219 (382)
T KOG1548|consen 212 KLRVERAK 219 (382)
T ss_pred EEEEehhh
Confidence 99998775
No 138
>KOG0116|consensus
Probab=98.57 E-value=1.1e-07 Score=81.19 Aligned_cols=76 Identities=18% Similarity=0.226 Sum_probs=64.5
Q ss_pred CCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEcc-C--CCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEc
Q psy4057 9 CVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALK-T--LKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYS 85 (246)
Q Consensus 9 ~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~-~--~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a 85 (246)
....+|||+|||.+++.++|.+.|..||.|+...|.. . .++..||||+|.+.++++.|++. +...+.|+++.|+--
T Consensus 286 ~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek 364 (419)
T KOG0116|consen 286 ADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEK 364 (419)
T ss_pred ecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEec
Confidence 3445599999999999999999999999999976654 2 24449999999999999999994 488889999999763
No 139
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.50 E-value=4.5e-07 Score=63.12 Aligned_cols=68 Identities=24% Similarity=0.247 Sum_probs=44.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCCccEEEEEeCCHHHHHHHHHHhCCC-----ccCCCCceEE
Q psy4057 172 QILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGF-----KITPTHAMKI 241 (246)
Q Consensus 172 ~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~-----~i~~g~~l~v 241 (246)
++|.|.+++..++.++|++.|+.||.|..|.+.++. ..|+|.|.+.+.|+.|+..+.-. .|. +..+.+
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~-~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~-~~~~~~ 74 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD-TEGYVRFKTPEAAQKALEKLKEANDGKLKIK-GKEVTL 74 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT--SEEEEEESS---HHHHHHHHHHTTTS-B-TT-SSSEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC-CEEEEEECCcchHHHHHHHHHhccCCceEEc-CceEEE
Confidence 578999999999999999999999999999999988 47999999999999999987544 444 455444
No 140
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.48 E-value=6.9e-07 Score=58.12 Aligned_cols=69 Identities=19% Similarity=0.404 Sum_probs=47.7
Q ss_pred cEEEecCCChhhhHHH----HHHHhhccC-CeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEcc
Q psy4057 12 NFVYVTHISSTDLKKS----LYAIFSQFG-QIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSK 86 (246)
Q Consensus 12 ~~l~V~nl~~~~~e~~----l~~~F~~fG-~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~ 86 (246)
..|||.|||.+..... |+.++.-+| .|.+| +.+.|.|.|.+.+.|.+|...|+|-.++|+.|.|.|..
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v-------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV-------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE---------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE-------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcC
Confidence 4689999998665544 666777775 67776 45889999999999999999999999999999999974
Q ss_pred C
Q psy4057 87 T 87 (246)
Q Consensus 87 ~ 87 (246)
.
T Consensus 76 ~ 76 (90)
T PF11608_consen 76 K 76 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 141
>KOG0106|consensus
Probab=98.46 E-value=1.5e-07 Score=73.06 Aligned_cols=70 Identities=19% Similarity=0.358 Sum_probs=64.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCCccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEeec
Q psy4057 172 QILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAK 245 (246)
Q Consensus 172 ~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~ak 245 (246)
..+||++||..+.+.+|..+|..||.+.++.+.. ||+||+|.+..+|.-|+..|||..+. |..+.|.|++
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~---gf~fv~fed~rda~Dav~~l~~~~l~-~e~~vve~~r 71 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN---GFGFVEFEDPRDADDAVHDLDGKELC-GERLVVEHAR 71 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec---ccceeccCchhhhhcccchhcCceec-ceeeeeeccc
Confidence 3589999999999999999999999998887764 58999999999999999999999999 7669999986
No 142
>KOG0226|consensus
Probab=98.41 E-value=2.7e-07 Score=72.20 Aligned_cols=76 Identities=20% Similarity=0.314 Sum_probs=67.1
Q ss_pred CCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccC---CCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEc
Q psy4057 10 VTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKT---LKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYS 85 (246)
Q Consensus 10 ~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~---~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a 85 (246)
-+.+||.+.|..+++.+.|-..|.+|-.-...+++++ ++++||+||.|.++.++..|+.+|||..+..++|...-+
T Consensus 189 ~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 189 DDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred ccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 4678999999999999999999999987666666655 489999999999999999999999999999999887654
No 143
>KOG4209|consensus
Probab=98.41 E-value=5.7e-07 Score=71.41 Aligned_cols=77 Identities=17% Similarity=0.289 Sum_probs=69.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEE
Q psy4057 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKI 241 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v 241 (246)
.....+.+||+|+.+.+|.+++...|+.||.|..+-++.++ +||+||+|.+.+.+..|+. |||..|. |+.+.|
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~-~~~i~v 174 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIP-GPAIEV 174 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccc-ccccee
Confidence 44568899999999999999999999999999988888865 5799999999999999999 9999999 999999
Q ss_pred Eeec
Q psy4057 242 SFAK 245 (246)
Q Consensus 242 ~~ak 245 (246)
++.+
T Consensus 175 t~~r 178 (231)
T KOG4209|consen 175 TLKR 178 (231)
T ss_pred eeee
Confidence 8754
No 144
>KOG4209|consensus
Probab=98.37 E-value=5.7e-07 Score=71.42 Aligned_cols=79 Identities=16% Similarity=0.203 Sum_probs=70.8
Q ss_pred CCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC---CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEE
Q psy4057 8 ICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL---KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQY 84 (246)
Q Consensus 8 ~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 84 (246)
.....++||+|+.+.++-+++...|+.||.|..|.+..+. .++|||||+|.+.+.+.+|+. |||..+.|+.+.|.+
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 3456899999999999999999999999999877777654 679999999999999999999 999999999999988
Q ss_pred ccC
Q psy4057 85 SKT 87 (246)
Q Consensus 85 a~~ 87 (246)
...
T Consensus 177 ~r~ 179 (231)
T KOG4209|consen 177 KRT 179 (231)
T ss_pred eee
Confidence 643
No 145
>KOG0116|consensus
Probab=98.35 E-value=8.4e-07 Score=75.93 Aligned_cols=71 Identities=27% Similarity=0.333 Sum_probs=59.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeC---C--ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEe
Q psy4057 171 NQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPN---R--HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISF 243 (246)
Q Consensus 171 ~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~---~--~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~ 243 (246)
...|||+|||.++++.+|+++|..||.|+...|... . ..||||+|.+.+.++.|+++= -..++ +++|.|+-
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig-~~kl~Vee 363 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIG-GRKLNVEE 363 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccC-CeeEEEEe
Confidence 555999999999999999999999999977766552 2 269999999999999998865 55566 88888864
No 146
>KOG4307|consensus
Probab=98.30 E-value=2.4e-06 Score=75.59 Aligned_cols=184 Identities=15% Similarity=0.072 Sum_probs=122.7
Q ss_pred CcEEEe--cCCChhhhHHHHHHHhhccCCeeEEEEccCC--CC-ccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEc
Q psy4057 11 TNFVYV--THISSTDLKKSLYAIFSQFGQIMDIVALKTL--KM-RGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYS 85 (246)
Q Consensus 11 ~~~l~V--~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~--~~-kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a 85 (246)
..++|| .++.+...+.+++++|..-- |..+.+..+. .+ .|.++|.|....++++|+. -|...+-.|.+.+..+
T Consensus 309 ~d~~y~~~~gm~fn~~~nd~rkfF~g~~-~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~-rn~~~~~~R~~q~~P~ 386 (944)
T KOG4307|consen 309 SDKYYNNYKGMEFNNDFNDGRKFFPGRN-AQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFT-RNPSDDVNRPFQTGPP 386 (944)
T ss_pred chhheeeecccccccccchhhhhcCccc-ccccchhhhhcCCCcCCceEEEecCcchHHHHHh-cCchhhhhcceeecCC
Confidence 566777 89999999999999987554 5555444443 44 6999999999999999988 5667777888888776
Q ss_pred cCCccccccccCccccccccccCCCCCCCChhHHhhhhhhhHHHHHHHHHHHHHHHhcccccCCCCCC----CCCCCCCC
Q psy4057 86 KTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQ----PAPPAPMA 161 (246)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 161 (246)
....-. ..+. ....+...+-... ...++.+.
T Consensus 387 g~~~~~---~a~~------------------------------------------~~~~~~~~~~~~~hg~p~~~pr~~~ 421 (944)
T KOG4307|consen 387 GNLGRN---GAPP------------------------------------------FQAGVPPPVIQNNHGRPIAPPRAMV 421 (944)
T ss_pred Cccccc---cCcc------------------------------------------ccccCCCCcccccCCCCCCCccccc
Confidence 433210 0000 0000000000000 00111111
Q ss_pred CC---CCCCCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceE-EEEeeCC----ccEEEEEeCCHHHHHHHHHHhCCCcc
Q psy4057 162 TA---GVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKE-VRLVPNR----HDIAFVEFENEMQSAAAKLALHGFKI 233 (246)
Q Consensus 162 ~~---~~~~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~-v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g~~i 233 (246)
.. .-...+..-+|||..||..+++.++-+.|..--.|++ |.|.+.. .+.|||.|.+.+++..|...-+.+.+
T Consensus 422 ~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~ 501 (944)
T KOG4307|consen 422 RPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYP 501 (944)
T ss_pred CCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhccccccc
Confidence 11 1123446889999999999999999999998777766 6666644 46899999999999999877666666
Q ss_pred CCCCceEEE
Q psy4057 234 TPTHAMKIS 242 (246)
Q Consensus 234 ~~g~~l~v~ 242 (246)
+ .+.|+|.
T Consensus 502 G-~r~irv~ 509 (944)
T KOG4307|consen 502 G-HRIIRVD 509 (944)
T ss_pred C-ceEEEee
Confidence 6 6888874
No 147
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.30 E-value=5.1e-06 Score=56.61 Aligned_cols=76 Identities=20% Similarity=0.241 Sum_probs=61.6
Q ss_pred cEEEecCCChhhhHHHHHHHhhcc--CCeeEEEEccCC---CCccEEEEEEcCHHHHHHHHHHhcCCccC----CeeEEE
Q psy4057 12 NFVYVTHISSTDLKKSLYAIFSQF--GQIMDIVALKTL---KMRGQAFVIFKEIASATNALRSMQGFPFY----DKPMRI 82 (246)
Q Consensus 12 ~~l~V~nl~~~~~e~~l~~~F~~f--G~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~----g~~l~v 82 (246)
.||.|+|||...+.++|.+++... |...-+.++-|. .+.|||||-|.+++.|....+..+|..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 589999999999999999888643 666666666554 56799999999999999999999997774 455677
Q ss_pred EEccC
Q psy4057 83 QYSKT 87 (246)
Q Consensus 83 ~~a~~ 87 (246)
.||+-
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 88753
No 148
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.07 E-value=1.4e-05 Score=55.71 Aligned_cols=70 Identities=17% Similarity=0.304 Sum_probs=44.3
Q ss_pred cEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcC-----CccCCeeEEEEE
Q psy4057 12 NFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQG-----FPFYDKPMRIQY 84 (246)
Q Consensus 12 ~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng-----~~~~g~~l~v~~ 84 (246)
..|.|.+++.+++.++|++.|+.||.|..|.+.+ ....|+|.|.++++|+.|++.+.. ..+.+..+.+..
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~---G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~v 76 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSR---GDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEV 76 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--T---T-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE-
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecC---CCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEE
Confidence 4678888999999999999999999999887644 445799999999999999987743 456666666655
No 149
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.98 E-value=1.8e-05 Score=47.78 Aligned_cols=52 Identities=10% Similarity=0.270 Sum_probs=42.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCCccEEEEEeCCHHHHHHHH
Q psy4057 172 QILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAK 225 (246)
Q Consensus 172 ~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~Al 225 (246)
+.|-|.+.+.+..++ +...|..||+|.++.+.... .+.+|.|.+..+|.+|+
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~~~-~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPEST-NWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCCCC-cEEEEEECCHHHHHhhC
Confidence 567888998876655 55588899999999988544 58999999999999985
No 150
>KOG1365|consensus
Probab=97.91 E-value=0.00029 Score=58.66 Aligned_cols=149 Identities=15% Similarity=0.130 Sum_probs=95.8
Q ss_pred EecCCChhhhHHHHHHHhhccCCeeE-EEEcc--CCCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEccCCccc
Q psy4057 15 YVTHISSTDLKKSLYAIFSQFGQIMD-IVALK--TLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDV 91 (246)
Q Consensus 15 ~V~nl~~~~~e~~l~~~F~~fG~i~~-v~~~~--~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~~~~~~ 91 (246)
-.++||..-+..++-.+|...-...- +.++. -++.-|.|.|.|.+.+.-+-|++ -+...+.++.|.|-.+....-.
T Consensus 64 RaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~Rdlalk-Rhkhh~g~ryievYka~ge~f~ 142 (508)
T KOG1365|consen 64 RARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALK-RHKHHMGTRYIEVYKATGEEFL 142 (508)
T ss_pred EecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhH-hhhhhccCCceeeeccCchhhe
Confidence 34899999999888888875531111 11122 22445899999999999999987 4566677888888766433211
Q ss_pred cccccCccccccccccCCCCCCCChhHHhhhhhhhHHHHHHHHHHHHHHHhcc--cccCCCCCCCCCCCCCCCCCCCCCC
Q psy4057 92 ISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQAL--SVQQPPVSQPAPPAPMATAGVPEQP 169 (246)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (246)
- ..+. ...+++.+ -.
T Consensus 143 ~------------------------------------------------iagg~s~e~~~fls---------------k~ 159 (508)
T KOG1365|consen 143 K------------------------------------------------IAGGTSNEAAPFLS---------------KE 159 (508)
T ss_pred E------------------------------------------------ecCCccccCCCCCC---------------cc
Confidence 0 0010 00001100 00
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHccC----CCceEEEEeeC--C--ccEEEEEeCCHHHHHHHHHH
Q psy4057 170 PNQILFLTNLPEETSEMMLSMLFNQF----PGFKEVRLVPN--R--HDIAFVEFENEMQSAAAKLA 227 (246)
Q Consensus 170 ~~~~l~v~nL~~~~t~e~l~~~f~~~----G~i~~v~~~~~--~--~g~afV~f~~~~~A~~Al~~ 227 (246)
.--.|-+++||+++++.++..+|... |..+.|.++.. . .|-|||.|..+++|+.|+..
T Consensus 160 ~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k 225 (508)
T KOG1365|consen 160 NQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK 225 (508)
T ss_pred cceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH
Confidence 12344568999999999999999632 24456666553 2 57899999999999999875
No 151
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.88 E-value=3.1e-05 Score=63.17 Aligned_cols=74 Identities=9% Similarity=0.326 Sum_probs=61.1
Q ss_pred CCcEEEEcCCCCCCCHHHH------HHHHccCCCceEEEEeeCC------ccE--EEEEeCCHHHHHHHHHHhCCCccCC
Q psy4057 170 PNQILFLTNLPEETSEMML------SMLFNQFPGFKEVRLVPNR------HDI--AFVEFENEMQSAAAKLALHGFKITP 235 (246)
Q Consensus 170 ~~~~l~v~nL~~~~t~e~l------~~~f~~~G~i~~v~~~~~~------~g~--afV~f~~~~~A~~Al~~l~g~~i~~ 235 (246)
....+||-+||+.+..|++ .+.|++||.|..|.+-+.- .+. .+|.|.+.++|.+||...+|...+
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~D- 191 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLD- 191 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccccc-
Confidence 3566788889988877652 3679999999988877643 122 499999999999999999999999
Q ss_pred CCceEEEee
Q psy4057 236 THAMKISFA 244 (246)
Q Consensus 236 g~~l~v~~a 244 (246)
|+.|+..|+
T Consensus 192 Gr~lkatYG 200 (480)
T COG5175 192 GRVLKATYG 200 (480)
T ss_pred CceEeeecC
Confidence 999999986
No 152
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.80 E-value=4.8e-05 Score=62.11 Aligned_cols=77 Identities=22% Similarity=0.386 Sum_probs=60.3
Q ss_pred CcEEEecCCChhhhHHH------HHHHhhccCCeeEEEEccCC---CC-ccEE--EEEEcCHHHHHHHHHHhcCCccCCe
Q psy4057 11 TNFVYVTHISSTDLKKS------LYAIFSQFGQIMDIVALKTL---KM-RGQA--FVIFKEIASATNALRSMQGFPFYDK 78 (246)
Q Consensus 11 ~~~l~V~nl~~~~~e~~------l~~~F~~fG~i~~v~~~~~~---~~-kg~a--FV~f~~~~~A~~Ai~~lng~~~~g~ 78 (246)
.+-+||-+|++.+-.++ =.++|.+||.|..|.+-+.- .+ -+.+ +|+|.+.++|.+||.+.+|..+.||
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 35678877776554444 25899999999999886532 12 1334 9999999999999999999999999
Q ss_pred eEEEEEccC
Q psy4057 79 PMRIQYSKT 87 (246)
Q Consensus 79 ~l~v~~a~~ 87 (246)
.|+..|...
T Consensus 194 ~lkatYGTT 202 (480)
T COG5175 194 VLKATYGTT 202 (480)
T ss_pred eEeeecCch
Confidence 999999643
No 153
>KOG2314|consensus
Probab=97.79 E-value=7.7e-05 Score=64.86 Aligned_cols=74 Identities=14% Similarity=0.244 Sum_probs=62.0
Q ss_pred CCCcEEEEcCCCCCCC------HHHHHHHHccCCCceEEEEeeCC----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCc
Q psy4057 169 PPNQILFLTNLPEETS------EMMLSMLFNQFPGFKEVRLVPNR----HDIAFVEFENEMQSAAAKLALHGFKITPTHA 238 (246)
Q Consensus 169 ~~~~~l~v~nL~~~~t------~e~l~~~f~~~G~i~~v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~ 238 (246)
....+++|.|.|.--. ...|..+|+++|++..+.++.+. +||.|++|.+..+|+.|++.|||+.++.+++
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 4588999999986221 23567889999999999998755 6899999999999999999999999997788
Q ss_pred eEEE
Q psy4057 239 MKIS 242 (246)
Q Consensus 239 l~v~ 242 (246)
+.|.
T Consensus 136 f~v~ 139 (698)
T KOG2314|consen 136 FFVR 139 (698)
T ss_pred EEee
Confidence 7764
No 154
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.79 E-value=0.00019 Score=52.29 Aligned_cols=73 Identities=21% Similarity=0.314 Sum_probs=55.3
Q ss_pred CCCCCcEEEecC---------CChhhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccCC
Q psy4057 7 HICVTNFVYVTH---------ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYD 77 (246)
Q Consensus 7 ~~~~~~~l~V~n---------l~~~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g 77 (246)
-.||..||.|.= .=.+....+|.+.|..||++.-|+... +.-.|+|.+-++|.+|+. ++|..+.|
T Consensus 23 ~GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~-----~~mwVTF~dg~sALaals-~dg~~v~g 96 (146)
T PF08952_consen 23 QGPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG-----DTMWVTFRDGQSALAALS-LDGIQVNG 96 (146)
T ss_dssp ---TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET-----TCEEEEESSCHHHHHHHH-GCCSEETT
T ss_pred cCCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC-----CeEEEEECccHHHHHHHc-cCCcEECC
Confidence 468899999821 223445668999999999888776643 578999999999999999 99999999
Q ss_pred eeEEEEEc
Q psy4057 78 KPMRIQYS 85 (246)
Q Consensus 78 ~~l~v~~a 85 (246)
+.|+|..-
T Consensus 97 ~~l~i~LK 104 (146)
T PF08952_consen 97 RTLKIRLK 104 (146)
T ss_dssp EEEEEEE-
T ss_pred EEEEEEeC
Confidence 99999984
No 155
>KOG2314|consensus
Probab=97.78 E-value=0.00011 Score=64.05 Aligned_cols=74 Identities=23% Similarity=0.355 Sum_probs=61.5
Q ss_pred CcEEEecCCCh------hhhHHHHHHHhhccCCeeEEEEccCC--CCccEEEEEEcCHHHHHHHHHHhcCCcc-CCeeEE
Q psy4057 11 TNFVYVTHISS------TDLKKSLYAIFSQFGQIMDIVALKTL--KMRGQAFVIFKEIASATNALRSMQGFPF-YDKPMR 81 (246)
Q Consensus 11 ~~~l~V~nl~~------~~~e~~l~~~F~~fG~i~~v~~~~~~--~~kg~aFV~f~~~~~A~~Ai~~lng~~~-~g~~l~ 81 (246)
..+|+|.|+|- +..+.-|..+|+++|+|....+.-+. .++||.|++|.+..+|+.|+.+|||..+ ..++..
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~ 137 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFF 137 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEE
Confidence 56788877763 44556688999999999999887554 7889999999999999999999999888 577777
Q ss_pred EEE
Q psy4057 82 IQY 84 (246)
Q Consensus 82 v~~ 84 (246)
|..
T Consensus 138 v~~ 140 (698)
T KOG2314|consen 138 VRL 140 (698)
T ss_pred eeh
Confidence 765
No 156
>KOG1995|consensus
Probab=97.77 E-value=3.3e-05 Score=63.61 Aligned_cols=79 Identities=20% Similarity=0.306 Sum_probs=67.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceE--------EEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCcc
Q psy4057 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKE--------VRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKI 233 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~--------v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i 233 (246)
......++||-+||..++..+|...|.++|.|.. |++..++ ++-|.|.|.+...|+.|+.-++++.|
T Consensus 62 ~~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf 141 (351)
T KOG1995|consen 62 DKSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDF 141 (351)
T ss_pred cccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccc
Confidence 4556889999999999999999999999999932 2333333 57899999999999999999999999
Q ss_pred CCCCceEEEeecC
Q psy4057 234 TPTHAMKISFAKK 246 (246)
Q Consensus 234 ~~g~~l~v~~ak~ 246 (246)
. |.+|+|.+|.+
T Consensus 142 ~-gn~ikvs~a~~ 153 (351)
T KOG1995|consen 142 C-GNTIKVSLAER 153 (351)
T ss_pred c-CCCchhhhhhh
Confidence 9 89999998764
No 157
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.76 E-value=0.00016 Score=49.64 Aligned_cols=72 Identities=11% Similarity=0.169 Sum_probs=50.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHccCCCceEEE------------EeeCCccEEEEEeCCHHHHHHHHHHhCCCccCCCCc
Q psy4057 171 NQILFLTNLPEETSEMMLSMLFNQFPGFKEVR------------LVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHA 238 (246)
Q Consensus 171 ~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~------------~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~ 238 (246)
.+-|.|-+.|.. .-..+-+.|++||.|.+.. -.....++--|.|.+..+|.+||+ -||..|.++--
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEE
Confidence 556788888887 4456788899999997765 233334799999999999999987 79999983344
Q ss_pred eEEEee
Q psy4057 239 MKISFA 244 (246)
Q Consensus 239 l~v~~a 244 (246)
+-|.|.
T Consensus 84 vGV~~~ 89 (100)
T PF05172_consen 84 VGVKPC 89 (100)
T ss_dssp EEEEE-
T ss_pred EEEEEc
Confidence 446664
No 158
>KOG0115|consensus
Probab=97.74 E-value=0.00012 Score=57.71 Aligned_cols=59 Identities=19% Similarity=0.230 Sum_probs=50.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC----ccEEEEEeCCHHHHHHHHHHhCC
Q psy4057 172 QILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR----HDIAFVEFENEMQSAAAKLALHG 230 (246)
Q Consensus 172 ~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g 230 (246)
..|+|.||...++.|.|.+.|++||.|.+..+.-|. .+-++|.|...-.|.+|+..+.-
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~ 94 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCRE 94 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhcc
Confidence 569999999999999999999999999665555543 35799999999999999998843
No 159
>KOG1995|consensus
Probab=97.73 E-value=3.8e-05 Score=63.28 Aligned_cols=83 Identities=16% Similarity=0.225 Sum_probs=71.1
Q ss_pred CCCCCcEEEecCCChhhhHHHHHHHhhccCCeeE--------EEEccCC---CCccEEEEEEcCHHHHHHHHHHhcCCcc
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMD--------IVALKTL---KMRGQAFVIFKEIASATNALRSMQGFPF 75 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~--------v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~ 75 (246)
.-.-..+|||-.|+..+++++|.++|.++|.|.. |.+.++. +.|+-|.|+|.+...|+.|++-.++..+
T Consensus 62 ~~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf 141 (351)
T KOG1995|consen 62 DKSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDF 141 (351)
T ss_pred cccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccc
Confidence 3445679999999999999999999999997743 3444443 7889999999999999999999999999
Q ss_pred CCeeEEEEEccCCc
Q psy4057 76 YDKPMRIQYSKTDS 89 (246)
Q Consensus 76 ~g~~l~v~~a~~~~ 89 (246)
.|.+|+|..+....
T Consensus 142 ~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 142 CGNTIKVSLAERRT 155 (351)
T ss_pred cCCCchhhhhhhcc
Confidence 99999999886554
No 160
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.69 E-value=0.00027 Score=51.48 Aligned_cols=72 Identities=22% Similarity=0.370 Sum_probs=54.1
Q ss_pred CCCCCcEEEEcCCC-----CCCCHH----HHHHHHccCCCceEEEEeeCCccEEEEEeCCHHHHHHHHHHhCCCccCCCC
Q psy4057 167 EQPPNQILFLTNLP-----EETSEM----MLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTH 237 (246)
Q Consensus 167 ~~~~~~~l~v~nL~-----~~~t~e----~l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~~g~ 237 (246)
.+||..++.|.=+. ....++ +|.+.|..||.+.-+|++.+ .-.|+|.+-++|.+|+. |+|.++. |+
T Consensus 23 ~GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~---~mwVTF~dg~sALaals-~dg~~v~-g~ 97 (146)
T PF08952_consen 23 QGPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD---TMWVTFRDGQSALAALS-LDGIQVN-GR 97 (146)
T ss_dssp ---TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT---CEEEEESSCHHHHHHHH-GCCSEET-TE
T ss_pred cCCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC---eEEEEECccHHHHHHHc-cCCcEEC-CE
Confidence 57788888886444 123333 77788999999999999886 48999999999999966 9999999 99
Q ss_pred ceEEEe
Q psy4057 238 AMKISF 243 (246)
Q Consensus 238 ~l~v~~ 243 (246)
.|+|..
T Consensus 98 ~l~i~L 103 (146)
T PF08952_consen 98 TLKIRL 103 (146)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 999975
No 161
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.66 E-value=0.00021 Score=43.15 Aligned_cols=52 Identities=21% Similarity=0.374 Sum_probs=42.4
Q ss_pred cEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHH
Q psy4057 12 NFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNAL 67 (246)
Q Consensus 12 ~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai 67 (246)
+.|-|.+.+.+..+ ++...|..||+|.++.+. ....+.+|.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~---~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVP---ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcC---CCCcEEEEEECCHHHHHhhC
Confidence 45677888877765 566689999999998764 35789999999999999985
No 162
>KOG4307|consensus
Probab=97.65 E-value=0.0002 Score=63.84 Aligned_cols=72 Identities=21% Similarity=0.355 Sum_probs=62.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHccCCCc-eEEEEeeCC----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEe
Q psy4057 171 NQILFLTNLPEETSEMMLSMLFNQFPGF-KEVRLVPNR----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISF 243 (246)
Q Consensus 171 ~~~l~v~nL~~~~t~e~l~~~f~~~G~i-~~v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~ 243 (246)
.++|-+.|+|++++-+||-++|..|-.+ -+|++-.+. .|-|.|-|++.++|.+|...|+++.|. ++.+.+..
T Consensus 867 p~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~-nr~V~l~i 943 (944)
T KOG4307|consen 867 PRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIR-NRVVSLRI 943 (944)
T ss_pred CeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCccc-ceeEEEEe
Confidence 4488899999999999999999999887 556665544 478999999999999999999999999 89988754
No 163
>KOG0128|consensus
Probab=97.60 E-value=2.8e-06 Score=76.76 Aligned_cols=155 Identities=19% Similarity=0.118 Sum_probs=113.3
Q ss_pred cEEEecCCChhhhHH-HHHHHhhccCCeeEEEEccCC---CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEccC
Q psy4057 12 NFVYVTHISSTDLKK-SLYAIFSQFGQIMDIVALKTL---KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKT 87 (246)
Q Consensus 12 ~~l~V~nl~~~~~e~-~l~~~F~~fG~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~~ 87 (246)
+..++.++.+...+. .....|..+|.|+.|.+...+ ....++++.+....++..|.. ..+..+.++...+..+..
T Consensus 572 ~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~-pa~~~~a~~~~av~~ad~ 650 (881)
T KOG0128|consen 572 REKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATV-PAGGALANRSAAVGLADA 650 (881)
T ss_pred hhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhccc-ccccccCCccccCCCCCc
Confidence 344556776655555 578899999999999887633 344589999999999999987 677778888887777654
Q ss_pred CccccccccCccccccccccCCCCCCCChhHHhhhhhhhHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCCCC
Q psy4057 88 DSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPE 167 (246)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (246)
...... ... ....
T Consensus 651 ~~~~~~------------------------------------------------~kv-------------------s~n~ 663 (881)
T KOG0128|consen 651 EEKEEN------------------------------------------------FKV-------------------SPNE 663 (881)
T ss_pred hhhhhc------------------------------------------------cCc-------------------CchH
Confidence 421000 000 0001
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEee----CC-ccEEEEEeCCHHHHHHHHHHhCCCccC
Q psy4057 168 QPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVP----NR-HDIAFVEFENEMQSAAAKLALHGFKIT 234 (246)
Q Consensus 168 ~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~----~~-~g~afV~f~~~~~A~~Al~~l~g~~i~ 234 (246)
.....++|++||+..+.+++|...|..+|.+..+++.. ++ +|+|+++|...++|.+|+....++.++
T Consensus 664 ~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 664 IRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 12356789999999999999999999999997777652 22 689999999999999998877666554
No 164
>KOG2202|consensus
Probab=97.58 E-value=4.4e-05 Score=60.14 Aligned_cols=61 Identities=18% Similarity=0.439 Sum_probs=53.5
Q ss_pred HHHHHHhh-ccCCeeEEEEccCC--CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEcc
Q psy4057 26 KSLYAIFS-QFGQIMDIVALKTL--KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSK 86 (246)
Q Consensus 26 ~~l~~~F~-~fG~i~~v~~~~~~--~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~ 86 (246)
++++.-|. +||+|+++.+.... ...|-++|.|..+++|++|++.||+.-|.|++|...++.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 55666666 99999999887655 678999999999999999999999999999999999863
No 165
>KOG3152|consensus
Probab=97.58 E-value=5e-05 Score=59.76 Aligned_cols=66 Identities=20% Similarity=0.309 Sum_probs=59.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCCc-----------------cEEEEEeCCHHHHHHHHHHhCCCc
Q psy4057 170 PNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRH-----------------DIAFVEFENEMQSAAAKLALHGFK 232 (246)
Q Consensus 170 ~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~~-----------------g~afV~f~~~~~A~~Al~~l~g~~ 232 (246)
..-+||++++|+.+...-|++++++||.|-+|.|-+... .-|-|+|.+...|......|||..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 467899999999999999999999999999999888430 138999999999999999999999
Q ss_pred cCC
Q psy4057 233 ITP 235 (246)
Q Consensus 233 i~~ 235 (246)
|+|
T Consensus 153 Igg 155 (278)
T KOG3152|consen 153 IGG 155 (278)
T ss_pred cCC
Confidence 994
No 166
>KOG2202|consensus
Probab=97.57 E-value=4.5e-05 Score=60.13 Aligned_cols=58 Identities=14% Similarity=0.169 Sum_probs=49.2
Q ss_pred HHHHHHHc-cCCCceEEEEeeCC----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEee
Q psy4057 186 MMLSMLFN-QFPGFKEVRLVPNR----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFA 244 (246)
Q Consensus 186 e~l~~~f~-~~G~i~~v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~a 244 (246)
|++...++ +||+|+.+.+-.+. .|.++|.|...++|++|++.|||.+|. |++|...+.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~-G~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYN-GRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCcccc-CCcceeeec
Confidence 45555666 99999988776654 478999999999999999999999999 999988764
No 167
>KOG4210|consensus
Probab=97.55 E-value=6.3e-05 Score=61.87 Aligned_cols=80 Identities=19% Similarity=0.229 Sum_probs=69.4
Q ss_pred CCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC---CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEc
Q psy4057 9 CVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL---KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYS 85 (246)
Q Consensus 9 ~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a 85 (246)
++..-.+|++++..+++++|+..|..+|.|..+++..+. ..+|+|+|.|.+..++..++.. +...+.|+++.+.+.
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 261 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEED 261 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccC
Confidence 333444499999999999999999999999999888654 7889999999999999999987 788899999999997
Q ss_pred cCCc
Q psy4057 86 KTDS 89 (246)
Q Consensus 86 ~~~~ 89 (246)
....
T Consensus 262 ~~~~ 265 (285)
T KOG4210|consen 262 EPRP 265 (285)
T ss_pred CCCc
Confidence 6654
No 168
>KOG1855|consensus
Probab=97.55 E-value=9e-05 Score=62.42 Aligned_cols=65 Identities=18% Similarity=0.211 Sum_probs=57.2
Q ss_pred CCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC----------------CCccEEEEEEcCHHHHHHHHHHhc
Q psy4057 8 ICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL----------------KMRGQAFVIFKEIASATNALRSMQ 71 (246)
Q Consensus 8 ~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~----------------~~kg~aFV~f~~~~~A~~Ai~~ln 71 (246)
.-++++|.+.|||.+-.-+.|.++|+.+|.|..|+|+.-+ ..+-+|+|+|...+.|.+|.+.||
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 3478999999999999999999999999999999999751 135679999999999999999775
Q ss_pred C
Q psy4057 72 G 72 (246)
Q Consensus 72 g 72 (246)
.
T Consensus 308 ~ 308 (484)
T KOG1855|consen 308 P 308 (484)
T ss_pred h
Confidence 4
No 169
>KOG1855|consensus
Probab=97.53 E-value=6.8e-05 Score=63.12 Aligned_cols=65 Identities=26% Similarity=0.359 Sum_probs=56.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeC------C------------ccEEEEEeCCHHHHHHHHHHh
Q psy4057 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPN------R------------HDIAFVEFENEMQSAAAKLAL 228 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~------~------------~g~afV~f~~~~~A~~Al~~l 228 (246)
.+.++++|.+.|||.+-.-+.|.++|+.+|.|+.|++..- . +-+|+|+|.+.+.|.+|.+.|
T Consensus 227 eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 227 EELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred cccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 3458999999999999888999999999999999998763 1 237999999999999999988
Q ss_pred CCC
Q psy4057 229 HGF 231 (246)
Q Consensus 229 ~g~ 231 (246)
+..
T Consensus 307 ~~e 309 (484)
T KOG1855|consen 307 NPE 309 (484)
T ss_pred chh
Confidence 654
No 170
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.42 E-value=0.0011 Score=45.50 Aligned_cols=74 Identities=19% Similarity=0.267 Sum_probs=53.4
Q ss_pred CCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEc-cC---------CCCccEEEEEEcCHHHHHHHHHHhcCCccCCee
Q psy4057 10 VTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVAL-KT---------LKMRGQAFVIFKEIASATNALRSMQGFPFYDKP 79 (246)
Q Consensus 10 ~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~-~~---------~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~ 79 (246)
..+.|-|-+.|+. .-..+.+.|++||.|.+..-. ++ ....++--|+|.++.+|.+|+. -||..+.|..
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 3566888888888 445788999999999887411 11 2456899999999999999999 7999999887
Q ss_pred EE-EEEc
Q psy4057 80 MR-IQYS 85 (246)
Q Consensus 80 l~-v~~a 85 (246)
|- |.+.
T Consensus 83 mvGV~~~ 89 (100)
T PF05172_consen 83 MVGVKPC 89 (100)
T ss_dssp EEEEEE-
T ss_pred EEEEEEc
Confidence 65 5564
No 171
>KOG1996|consensus
Probab=97.41 E-value=0.00042 Score=55.70 Aligned_cols=74 Identities=22% Similarity=0.249 Sum_probs=59.2
Q ss_pred CCcEEEEcCCC--CCCC---HHHHHHHHccCCCceEEEEeeCC------ccEEEEEeCCHHHHHHHHHHhCCCccCCCCc
Q psy4057 170 PNQILFLTNLP--EETS---EMMLSMLFNQFPGFKEVRLVPNR------HDIAFVEFENEMQSAAAKLALHGFKITPTHA 238 (246)
Q Consensus 170 ~~~~l~v~nL~--~~~t---~e~l~~~f~~~G~i~~v~~~~~~------~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~ 238 (246)
++++|.++|+- ..+. +++++..+++||.|.+|.|.... .--.||+|.+.++|.+|+-.|||+.|+ |+.
T Consensus 280 ptkvlllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFG-Gr~ 358 (378)
T KOG1996|consen 280 PTKVLLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFG-GRV 358 (378)
T ss_pred chHHHHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceec-cee
Confidence 56677777753 2444 34788999999999888777654 124899999999999999999999999 999
Q ss_pred eEEEee
Q psy4057 239 MKISFA 244 (246)
Q Consensus 239 l~v~~a 244 (246)
++-.|-
T Consensus 359 v~A~Fy 364 (378)
T KOG1996|consen 359 VSACFY 364 (378)
T ss_pred eeheec
Confidence 887763
No 172
>KOG4676|consensus
Probab=97.38 E-value=0.00019 Score=59.86 Aligned_cols=68 Identities=19% Similarity=0.344 Sum_probs=59.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC--------ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEE
Q psy4057 172 QILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR--------HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKI 241 (246)
Q Consensus 172 ~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~--------~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v 241 (246)
.+|.|.||.++.|.++++.+|...|.|..++|.++- ...|||.|.|...+..| +.|.++.|- ++.|.|
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~va-QhLtntvfv-draliv 83 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVA-QHLTNTVFV-DRALIV 83 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHH-hhhccceee-eeeEEE
Confidence 389999999999999999999999999999998843 24799999999988887 889998887 666655
No 173
>KOG1996|consensus
Probab=97.35 E-value=0.00062 Score=54.79 Aligned_cols=65 Identities=15% Similarity=0.288 Sum_probs=55.5
Q ss_pred hhhhHHHHHHHhhccCCeeEEEEccCC----CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEc
Q psy4057 21 STDLKKSLYAIFSQFGQIMDIVALKTL----KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYS 85 (246)
Q Consensus 21 ~~~~e~~l~~~F~~fG~i~~v~~~~~~----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a 85 (246)
.+..++++.+-+++||.|.+|.|.... .-.---||+|...++|.+|+-.|||..|.||.++.+|-
T Consensus 296 d~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 296 DEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred cHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 466788899999999999999888664 12245899999999999999999999999999987763
No 174
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.23 E-value=0.0018 Score=42.36 Aligned_cols=57 Identities=25% Similarity=0.352 Sum_probs=44.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCCccEEEEEeCCHHHHHHHHHHhCC
Q psy4057 170 PNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHG 230 (246)
Q Consensus 170 ~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g 230 (246)
...+.+|+ +|..+...||.++|+.||.|. |..+.+- .|||...+.+.|..|+..+.-
T Consensus 8 RdHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT--SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 8 RDHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT--SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp GCCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT--EEEEEECCCHHHHHHHHHHTT
T ss_pred cceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC--cEEEEeecHHHHHHHHHHhcc
Confidence 46677777 999999999999999999964 5555553 599999999999999998864
No 175
>KOG3152|consensus
Probab=97.21 E-value=0.00023 Score=56.10 Aligned_cols=70 Identities=20% Similarity=0.179 Sum_probs=59.9
Q ss_pred CCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC-----------CCc--c--EEEEEEcCHHHHHHHHHHhcCCc
Q psy4057 10 VTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL-----------KMR--G--QAFVIFKEIASATNALRSMQGFP 74 (246)
Q Consensus 10 ~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~-----------~~k--g--~aFV~f~~~~~A~~Ai~~lng~~ 74 (246)
....||+++||+.+....|+++|+.||.|-.|.+-... .++ . -|.|+|.+...|..+.+.||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 45789999999999999999999999999999886522 111 1 28899999999999999999999
Q ss_pred cCCee
Q psy4057 75 FYDKP 79 (246)
Q Consensus 75 ~~g~~ 79 (246)
+.|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 98876
No 176
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=97.21 E-value=0.0036 Score=45.21 Aligned_cols=74 Identities=24% Similarity=0.287 Sum_probs=61.4
Q ss_pred CCCCCcEEEe----cCCChhhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEE
Q psy4057 7 HICVTNFVYV----THISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRI 82 (246)
Q Consensus 7 ~~~~~~~l~V----~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v 82 (246)
..+|=.+|.| .|+....+-..+....+.||+|.+|.++ .+..|.|.|.+..+|-+|+...+. ...|..+.|
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c----GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qC 156 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC----GRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQC 156 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec----CCceEEEEehhhHHHHHHHHhhcC-CCCCceEEe
Confidence 3577788888 7888877778899999999999999774 346799999999999999997765 667888888
Q ss_pred EEc
Q psy4057 83 QYS 85 (246)
Q Consensus 83 ~~a 85 (246)
.|-
T Consensus 157 sWq 159 (166)
T PF15023_consen 157 SWQ 159 (166)
T ss_pred ecc
Confidence 773
No 177
>KOG2416|consensus
Probab=97.18 E-value=0.0004 Score=60.94 Aligned_cols=80 Identities=10% Similarity=0.221 Sum_probs=66.1
Q ss_pred cCCCCCcEEEecCCChhhhHHHHHHHhh-ccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCcc---CCeeEE
Q psy4057 6 AHICVTNFVYVTHISSTDLKKSLYAIFS-QFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPF---YDKPMR 81 (246)
Q Consensus 6 ~~~~~~~~l~V~nl~~~~~e~~l~~~F~-~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~---~g~~l~ 81 (246)
...++++.|||.||.--.|.-+|+.++. ..|.|++..|- +-|..|||.|.+.++|..-.+.|||..+ .++.|.
T Consensus 439 sR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmD---kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ 515 (718)
T KOG2416|consen 439 SRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMD---KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLI 515 (718)
T ss_pred CCCCccceEeeecccccchHHHHHHHHhhccCchHHHHHH---HhhcceeEecccHHHHHHHHHHHhccccCCCCCceeE
Confidence 3557899999999999999999999999 55666665332 2456799999999999999999999887 678899
Q ss_pred EEEccCC
Q psy4057 82 IQYSKTD 88 (246)
Q Consensus 82 v~~a~~~ 88 (246)
+.|+...
T Consensus 516 adf~~~d 522 (718)
T KOG2416|consen 516 ADFVRAD 522 (718)
T ss_pred eeecchh
Confidence 9997543
No 178
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.11 E-value=0.004 Score=40.75 Aligned_cols=55 Identities=22% Similarity=0.313 Sum_probs=42.2
Q ss_pred CcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhc
Q psy4057 11 TNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQ 71 (246)
Q Consensus 11 ~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~ln 71 (246)
+...||. .|..+...||.++|++||.|.--.| +...|||...+.+.|..|+..+.
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi-----~dTSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWI-----NDTSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEEEEEE-----CTTEEEEEECCCHHHHHHHHHHT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEEEEEE-----cCCcEEEEeecHHHHHHHHHHhc
Confidence 4455566 9999999999999999998766555 44679999999999999988775
No 179
>KOG2416|consensus
Probab=97.04 E-value=0.00085 Score=58.93 Aligned_cols=78 Identities=18% Similarity=0.273 Sum_probs=62.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHcc-CCCceEEEEeeCCccEEEEEeCCHHHHHHHHHHhCCCcc--CCCCceEEEe
Q psy4057 167 EQPPNQILFLTNLPEETSEMMLSMLFNQ-FPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKI--TPTHAMKISF 243 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~~t~e~l~~~f~~-~G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i--~~g~~l~v~~ 243 (246)
..+++.+|+|.||-.-.|.-+|+.++.+ .|.|...++-+- +..|||.|.+.++|.....+|||-.- .+++.|.+.|
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkI-KShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf 518 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKI-KSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADF 518 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHh-hcceeEecccHHHHHHHHHHHhccccCCCCCceeEeee
Confidence 4557999999999998999999999994 555566644333 35799999999999999999999543 3358899999
Q ss_pred ec
Q psy4057 244 AK 245 (246)
Q Consensus 244 ak 245 (246)
+.
T Consensus 519 ~~ 520 (718)
T KOG2416|consen 519 VR 520 (718)
T ss_pred cc
Confidence 75
No 180
>KOG4574|consensus
Probab=96.80 E-value=0.00091 Score=61.02 Aligned_cols=74 Identities=20% Similarity=0.236 Sum_probs=63.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCCccEEEEEeCCHHHHHHHHHHhCCCccCC-CCceEEEeec
Q psy4057 171 NQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITP-THAMKISFAK 245 (246)
Q Consensus 171 ~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~~-g~~l~v~~ak 245 (246)
-....+.|.+-..+---|..+|+.||.|.+++.+++- ..|.|+|.+.+.|..|+++|+|+++.. |-+.+|+|||
T Consensus 298 qp~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~-N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 298 QPKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL-NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAK 372 (1007)
T ss_pred cchhhhhcccccchHHHHHHHHHhhcchhhheecccc-cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecc
Confidence 3444556666677778899999999999999998877 479999999999999999999998633 7899999997
No 181
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.80 E-value=0.011 Score=36.68 Aligned_cols=55 Identities=18% Similarity=0.255 Sum_probs=46.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHccC----CCceEEEEeeCCccEEEEEeCCHHHHHHHHHHh
Q psy4057 170 PNQILFLTNLPEETSEMMLSMLFNQF----PGFKEVRLVPNRHDIAFVEFENEMQSAAAKLAL 228 (246)
Q Consensus 170 ~~~~l~v~nL~~~~t~e~l~~~f~~~----G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l 228 (246)
....|+|+|+. +++.++++..|..| +. .+|..+.|. .|=|.|.+.+.|.+||.+|
T Consensus 4 rpeavhirGvd-~lsT~dI~~y~~~y~~~~~~-~~IEWIdDt--ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 4 RPEAVHIRGVD-ELSTDDIKAYFSEYFDEEGP-FRIEWIDDT--SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eeceEEEEcCC-CCCHHHHHHHHHHhcccCCC-ceEEEecCC--cEEEEECCHHHHHHHHHcC
Confidence 35679999997 48889999999999 43 678888886 4999999999999999865
No 182
>KOG0112|consensus
Probab=96.73 E-value=0.0024 Score=58.76 Aligned_cols=78 Identities=18% Similarity=0.217 Sum_probs=69.3
Q ss_pred CCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccCC--eeEEEEE
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYD--KPMRIQY 84 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g--~~l~v~~ 84 (246)
...+++.+|+++|..-+....|...|..||.|..|.+ .....||+|+|.+...|+.|++.|-|..+.| ++++|.|
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy---~hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdl 527 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDY---RHGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDL 527 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeec---ccCCcceeeecccCccchhhHHHHhcCcCCCCCccccccc
Confidence 5678999999999999999999999999999999755 2467899999999999999999999999954 7799999
Q ss_pred ccC
Q psy4057 85 SKT 87 (246)
Q Consensus 85 a~~ 87 (246)
+..
T Consensus 528 a~~ 530 (975)
T KOG0112|consen 528 ASP 530 (975)
T ss_pred ccC
Confidence 865
No 183
>KOG0115|consensus
Probab=96.73 E-value=0.0022 Score=50.78 Aligned_cols=75 Identities=21% Similarity=0.210 Sum_probs=62.6
Q ss_pred CcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC--CCccEEEEEEcCHHHHHHHHHHhcC----CccCCeeEEEEE
Q psy4057 11 TNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL--KMRGQAFVIFKEIASATNALRSMQG----FPFYDKPMRIQY 84 (246)
Q Consensus 11 ~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~--~~kg~aFV~f~~~~~A~~Ai~~lng----~~~~g~~l~v~~ 84 (246)
+..|||.||+.-++-+.|..-|+.||+|+.-.++-|. +..+-++|.|.+.-.|.+|.+.++- .+..+++..|..
T Consensus 31 ~a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 31 HAELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred cceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 4889999999999999999999999999998777665 5668899999999999999998843 444566666665
Q ss_pred c
Q psy4057 85 S 85 (246)
Q Consensus 85 a 85 (246)
.
T Consensus 111 ~ 111 (275)
T KOG0115|consen 111 M 111 (275)
T ss_pred h
Confidence 4
No 184
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.61 E-value=0.022 Score=39.89 Aligned_cols=68 Identities=16% Similarity=0.167 Sum_probs=52.3
Q ss_pred CCCcEEEecCCChhhhHHHHHHHhhccC-CeeEEEEccCC-CCccEEEEEEcCHHHHHHHHHHhcCCccC
Q psy4057 9 CVTNFVYVTHISSTDLKKSLYAIFSQFG-QIMDIVALKTL-KMRGQAFVIFKEIASATNALRSMQGFPFY 76 (246)
Q Consensus 9 ~~~~~l~V~nl~~~~~e~~l~~~F~~fG-~i~~v~~~~~~-~~kg~aFV~f~~~~~A~~Ai~~lng~~~~ 76 (246)
..+..+.+.-.|+-...++|..+.+.+- .|..+++++++ .++-.+.+.|.+.++|.......||..|.
T Consensus 11 ~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 11 RRSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred CCceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 3344444466666677767766666664 57889999998 57778999999999999999999998873
No 185
>KOG0129|consensus
Probab=96.58 E-value=0.0079 Score=52.23 Aligned_cols=63 Identities=17% Similarity=0.180 Sum_probs=57.0
Q ss_pred CCCCCcEEEecCCChhhhHHHHHHHhh-ccCCeeEEEEccCC---CCccEEEEEEcCHHHHHHHHHH
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLYAIFS-QFGQIMDIVALKTL---KMRGQAFVIFKEIASATNALRS 69 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~~~F~-~fG~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~ 69 (246)
.+-|.+|||||+||--++-++|-.+|. -||-|.-+-|-.|. =.+|-|=|+|.+..+--+||..
T Consensus 366 ~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 366 PIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred ccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 467899999999999999999999999 89999999888775 3569999999999999999983
No 186
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=96.46 E-value=0.0079 Score=46.19 Aligned_cols=60 Identities=18% Similarity=0.241 Sum_probs=46.3
Q ss_pred CHHHHHHHHccCCCceEEEEeeCCccEEEEEeCCHHHHHHHHHHhC--CCccCCCCceEEEeec
Q psy4057 184 SEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALH--GFKITPTHAMKISFAK 245 (246)
Q Consensus 184 t~e~l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~--g~~i~~g~~l~v~~ak 245 (246)
....|+++|..|+.+..+.+++.=+ -..|.|.+.+.|..|+..|+ +..+. |..+++.|+.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sFr-Ri~v~f~~~~~A~~~r~~l~~~~~~~~-g~~l~~yf~~ 69 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSFR-RIRVVFESPESAQRARQLLHWDGTSFN-GKRLRVYFGQ 69 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTTT-EEEEE-SSTTHHHHHHHTST--TSEET-TEE-EEE---
T ss_pred hHHHHHHHHHhcCCceEEEEcCCCC-EEEEEeCCHHHHHHHHHHhcccccccC-CCceEEEEcc
Confidence 4578999999999998887777542 39999999999999999999 99999 8999999974
No 187
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.42 E-value=0.023 Score=41.13 Aligned_cols=74 Identities=16% Similarity=0.203 Sum_probs=54.4
Q ss_pred CCCCCcEEEEcCCCCCC----CHHHHHHHHccCCCceEEEEeeCCccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEE
Q psy4057 167 EQPPNQILFLTNLPEET----SEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKIS 242 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~~----t~e~l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~ 242 (246)
.+||-.+|.|+=|..++ +...+...++.||+|.+|-+--. ..|+|.|.+..+|=.|+.+++.. .. |..++.+
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGr--qsavVvF~d~~SAC~Av~Af~s~-~p-gtm~qCs 157 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGR--QSAVVVFKDITSACKAVSAFQSR-AP-GTMFQCS 157 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCC--ceEEEEehhhHHHHHHHHhhcCC-CC-CceEEee
Confidence 56777888886554433 33345556789999998776543 36999999999999999999883 44 6777777
Q ss_pred ee
Q psy4057 243 FA 244 (246)
Q Consensus 243 ~a 244 (246)
|-
T Consensus 158 Wq 159 (166)
T PF15023_consen 158 WQ 159 (166)
T ss_pred cc
Confidence 63
No 188
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.17 E-value=0.13 Score=35.96 Aligned_cols=76 Identities=12% Similarity=0.248 Sum_probs=57.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHccC-CCceEEEEeeCCcc---EEEEEeCCHHHHHHHHHHhCCCccCC--CCceEEE
Q psy4057 169 PPNQILFLTNLPEETSEMMLSMLFNQF-PGFKEVRLVPNRHD---IAFVEFENEMQSAAAKLALHGFKITP--THAMKIS 242 (246)
Q Consensus 169 ~~~~~l~v~nL~~~~t~e~l~~~f~~~-G~i~~v~~~~~~~g---~afV~f~~~~~A~~Al~~l~g~~i~~--g~~l~v~ 242 (246)
.....+++...|..++-++|..+.+.+ ..|..++++++... .++++|.+.++|..=...+||+.|.. ..+++|-
T Consensus 11 ~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~FnslEpE~Chvv 90 (110)
T PF07576_consen 11 RRSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNSLEPETCHVV 90 (110)
T ss_pred CCceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCCCCCceeEEE
Confidence 345566666677777778888777766 44589999998742 58999999999999999999998852 3556665
Q ss_pred ee
Q psy4057 243 FA 244 (246)
Q Consensus 243 ~a 244 (246)
|-
T Consensus 91 fV 92 (110)
T PF07576_consen 91 FV 92 (110)
T ss_pred EE
Confidence 54
No 189
>KOG0804|consensus
Probab=96.06 E-value=0.018 Score=49.26 Aligned_cols=71 Identities=17% Similarity=0.247 Sum_probs=62.9
Q ss_pred cCCCCCcEEEecCCChhhhHHHHHHHhhcc-CCeeEEEEccCC-CCccEEEEEEcCHHHHHHHHHHhcCCccC
Q psy4057 6 AHICVTNFVYVTHISSTDLKKSLYAIFSQF-GQIMDIVALKTL-KMRGQAFVIFKEIASATNALRSMQGFPFY 76 (246)
Q Consensus 6 ~~~~~~~~l~V~nl~~~~~e~~l~~~F~~f-G~i~~v~~~~~~-~~kg~aFV~f~~~~~A~~Ai~~lng~~~~ 76 (246)
.+..++..|+|--+|..++..||..++..| ..|.+|+++||+ .++-...|.|.+.++|....+.+||..|.
T Consensus 69 ~~~~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 69 KNASSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred ccCCCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 345568999999999999999999998876 469999999998 77788999999999999999999998874
No 190
>KOG2193|consensus
Probab=96.01 E-value=0.0091 Score=50.65 Aligned_cols=69 Identities=19% Similarity=0.202 Sum_probs=54.0
Q ss_pred EEEEcCCCCCCCHHHHHHHHccCCCc-eEEEEeeCCccEEEEEeCCHHHHHHHHHHhCCCc-cCCCCceEEEee
Q psy4057 173 ILFLTNLPEETSEMMLSMLFNQFPGF-KEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFK-ITPTHAMKISFA 244 (246)
Q Consensus 173 ~l~v~nL~~~~t~e~l~~~f~~~G~i-~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~-i~~g~~l~v~~a 244 (246)
.||++||.+.++..+|.++|...-.- ..-.+++ +||+||.+.+..-|.+|++.++|.. +. |+++.|.++
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl~k--~gyafvd~pdq~wa~kaie~~sgk~elq-Gkr~e~~~s 73 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK--SGYAFVDCPDQQWANKAIETLSGKVELQ-GKRQEVEHS 73 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCcceeee--cceeeccCCchhhhhhhHHhhchhhhhc-Cceeeccch
Confidence 58999999999999999999864111 1111222 3899999999999999999999975 55 899888663
No 191
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.98 E-value=0.024 Score=43.61 Aligned_cols=62 Identities=24% Similarity=0.375 Sum_probs=46.2
Q ss_pred hhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhc--CCccCCeeEEEEEcc
Q psy4057 22 TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQ--GFPFYDKPMRIQYSK 86 (246)
Q Consensus 22 ~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~ln--g~~~~g~~l~v~~a~ 86 (246)
....+.|.++|..|+.+.....++. =+-..|.|.+.+.|..|...|+ +..+.|..++|.|+.
T Consensus 6 ~~~~~~l~~l~~~~~~~~~~~~L~s---FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~ 69 (184)
T PF04847_consen 6 PDNLAELEELFSTYDPPVQFSPLKS---FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQ 69 (184)
T ss_dssp ---HHHHHHHHHTT-SS-EEEEETT---TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE---
T ss_pred hhhHHHHHHHHHhcCCceEEEEcCC---CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcc
Confidence 3455789999999999988877664 3449999999999999999999 899999999999984
No 192
>KOG4849|consensus
Probab=95.88 E-value=0.0088 Score=49.47 Aligned_cols=73 Identities=12% Similarity=0.183 Sum_probs=59.9
Q ss_pred CcEEEecCCChhhhHHHHHHHhhccC--CeeEEEEcc---CCCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEE
Q psy4057 11 TNFVYVTHISSTDLKKSLYAIFSQFG--QIMDIVALK---TLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83 (246)
Q Consensus 11 ~~~l~V~nl~~~~~e~~l~~~F~~fG--~i~~v~~~~---~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~ 83 (246)
.-++||+||.--+|.+||.+....-| .+.+++... ++++||||+|...+..+.++-++-|...+++|+.-.|.
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 45789999999999999999888877 234444443 34899999999999999999999999999999876554
No 193
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.51 E-value=0.017 Score=44.11 Aligned_cols=65 Identities=12% Similarity=0.136 Sum_probs=45.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHcc-CCCc---eEEEEeeCC-------ccEEEEEeCCHHHHHHHHHHhCCCccC
Q psy4057 170 PNQILFLTNLPEETSEMMLSMLFNQ-FPGF---KEVRLVPNR-------HDIAFVEFENEMQSAAAKLALHGFKIT 234 (246)
Q Consensus 170 ~~~~l~v~nL~~~~t~e~l~~~f~~-~G~i---~~v~~~~~~-------~g~afV~f~~~~~A~~Al~~l~g~~i~ 234 (246)
....|.|++||+.+|++++.+.++. ++.- ..+.-..+. ..-|+|.|.+.++...=...++|+.|.
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~ 81 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFV 81 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEE
Confidence 4668999999999999999997776 5555 333322322 235999999999999999999998774
No 194
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.37 E-value=0.015 Score=44.48 Aligned_cols=81 Identities=11% Similarity=0.126 Sum_probs=51.0
Q ss_pred CCCCCcEEEecCCChhhhHHHHHHHhhc-cCCe---eEEEEccCC-----CCccEEEEEEcCHHHHHHHHHHhcCCccCC
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLYAIFSQ-FGQI---MDIVALKTL-----KMRGQAFVIFKEIASATNALRSMQGFPFYD 77 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~~~F~~-fG~i---~~v~~~~~~-----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g 77 (246)
.......|.|++||+.++++++++.++. ++.- ..+.-.... ..-..|+|.|.+.+++......++|..|.+
T Consensus 3 ~~~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D 82 (176)
T PF03467_consen 3 KEKEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVD 82 (176)
T ss_dssp ------EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-
T ss_pred CcccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEEC
Confidence 4455678999999999999999998887 7765 233211111 122569999999999999999999988743
Q ss_pred -----eeEEEEEccC
Q psy4057 78 -----KPMRIQYSKT 87 (246)
Q Consensus 78 -----~~l~v~~a~~ 87 (246)
.+-.|.+|..
T Consensus 83 ~kg~~~~~~VE~Apy 97 (176)
T PF03467_consen 83 SKGNEYPAVVEFAPY 97 (176)
T ss_dssp TTS-EEEEEEEE-SS
T ss_pred CCCCCcceeEEEcch
Confidence 2345677654
No 195
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.36 E-value=0.084 Score=32.74 Aligned_cols=53 Identities=23% Similarity=0.326 Sum_probs=40.8
Q ss_pred cEEEecCCChhhhHHHHHHHhhcc----CCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHh
Q psy4057 12 NFVYVTHISSTDLKKSLYAIFSQF----GQIMDIVALKTLKMRGQAFVIFKEIASATNALRSM 70 (246)
Q Consensus 12 ~~l~V~nl~~~~~e~~l~~~F~~f----G~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~l 70 (246)
..|+|.++. +++-++++.+|..| + ...|..+.| ..|-|.|.+.+.|.+|+..|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~-~~~IEWIdD----tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEG-PFRIEWIDD----TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCC-CceEEEecC----CcEEEEECCHHHHHHHHHcC
Confidence 578898774 46667888999888 5 455655554 55999999999999998754
No 196
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=95.27 E-value=0.97 Score=36.96 Aligned_cols=76 Identities=14% Similarity=0.224 Sum_probs=58.1
Q ss_pred CcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC----------CCccEEEEEEcCHHHHHHH----HHHhcC--Cc
Q psy4057 11 TNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL----------KMRGQAFVIFKEIASATNA----LRSMQG--FP 74 (246)
Q Consensus 11 ~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~----------~~kg~aFV~f~~~~~A~~A----i~~lng--~~ 74 (246)
+|.|...|+..+++--.+...|.+||+|++|.++.+. .......+.|-+.+.+-.. ++.|+. ..
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 5677778999999889999999999999999998754 3446789999999888654 344443 44
Q ss_pred cCCeeEEEEEcc
Q psy4057 75 FYDKPMRIQYSK 86 (246)
Q Consensus 75 ~~g~~l~v~~a~ 86 (246)
+.-..|.+.++.
T Consensus 95 L~S~~L~lsFV~ 106 (309)
T PF10567_consen 95 LKSESLTLSFVS 106 (309)
T ss_pred cCCcceeEEEEE
Confidence 566667777753
No 197
>KOG2068|consensus
Probab=94.98 E-value=0.011 Score=48.76 Aligned_cols=76 Identities=22% Similarity=0.364 Sum_probs=58.4
Q ss_pred cEEEecCCChhhhHHHH---HHHhhccCCeeEEEEccCCC------CccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEE
Q psy4057 12 NFVYVTHISSTDLKKSL---YAIFSQFGQIMDIVALKTLK------MRGQAFVIFKEIASATNALRSMQGFPFYDKPMRI 82 (246)
Q Consensus 12 ~~l~V~nl~~~~~e~~l---~~~F~~fG~i~~v~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v 82 (246)
+-+||-+|+.++-.+++ .++|.+||.|.+|.+.++.. .-..++|+|...++|..||...+|..+.|+.++.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 45667677755544443 36899999999998877541 1134999999999999999999999999999888
Q ss_pred EEccC
Q psy4057 83 QYSKT 87 (246)
Q Consensus 83 ~~a~~ 87 (246)
.+...
T Consensus 158 ~~gtt 162 (327)
T KOG2068|consen 158 SLGTT 162 (327)
T ss_pred hhCCC
Confidence 77644
No 198
>KOG4849|consensus
Probab=94.89 E-value=0.034 Score=46.10 Aligned_cols=78 Identities=15% Similarity=0.156 Sum_probs=61.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHccCCC--ceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceE
Q psy4057 168 QPPNQILFLTNLPEETSEMMLSMLFNQFPG--FKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMK 240 (246)
Q Consensus 168 ~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~--i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~ 240 (246)
....-++||+||--.+|++||.+....-|- +.++++..++ +|||+|...+..+.++.++.|--++|++-.+..
T Consensus 77 ~Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 77 EGRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred cCceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 335678999999888899999888776553 3666676665 689999999999999999999999999445555
Q ss_pred EEeec
Q psy4057 241 ISFAK 245 (246)
Q Consensus 241 v~~ak 245 (246)
++|-|
T Consensus 157 ~~~NK 161 (498)
T KOG4849|consen 157 LSYNK 161 (498)
T ss_pred eccch
Confidence 56543
No 199
>KOG0804|consensus
Probab=94.86 E-value=0.22 Score=42.93 Aligned_cols=78 Identities=10% Similarity=0.276 Sum_probs=62.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHccC-CCceEEEEeeCCc---cEEEEEeCCHHHHHHHHHHhCCCccCC--CCceE
Q psy4057 167 EQPPNQILFLTNLPEETSEMMLSMLFNQF-PGFKEVRLVPNRH---DIAFVEFENEMQSAAAKLALHGFKITP--THAMK 240 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~~t~e~l~~~f~~~-G~i~~v~~~~~~~---g~afV~f~~~~~A~~Al~~l~g~~i~~--g~~l~ 240 (246)
...++..|+|-.+|..+|--||-.++..| ..|.+++++++.. =..+|+|.+.++|..=.+.+||..|.. ....+
T Consensus 70 ~~~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~le~e~Ch 149 (493)
T KOG0804|consen 70 NASSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNSLEPEVCH 149 (493)
T ss_pred cCCCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCCCCcccee
Confidence 34448999999999999999999998765 5569999999763 259999999999999999999988752 34455
Q ss_pred EEee
Q psy4057 241 ISFA 244 (246)
Q Consensus 241 v~~a 244 (246)
|-|.
T Consensus 150 ll~V 153 (493)
T KOG0804|consen 150 LLYV 153 (493)
T ss_pred EEEE
Confidence 5444
No 200
>KOG2591|consensus
Probab=94.77 E-value=0.078 Score=46.72 Aligned_cols=67 Identities=19% Similarity=0.301 Sum_probs=54.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHcc--CCCceEEEEeeCCccEEEEEeCCHHHHHHHHHHhCC--CccCCCCce
Q psy4057 170 PNQILFLTNLPEETSEMMLSMLFNQ--FPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHG--FKITPTHAM 239 (246)
Q Consensus 170 ~~~~l~v~nL~~~~t~e~l~~~f~~--~G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g--~~i~~g~~l 239 (246)
..|+++++-+|..+..|+++-+|.. +..+.++.+--+. -=||+|++..+|+.|...|.- .+|. |++|
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~--nWyITfesd~DAQqAykylreevk~fq-gKpI 244 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND--NWYITFESDTDAQQAYKYLREEVKTFQ-GKPI 244 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC--ceEEEeecchhHHHHHHHHHHHHHhhc-Ccch
Confidence 4677888999999999999999974 6788888888776 379999999999999988754 3455 5554
No 201
>KOG2068|consensus
Probab=94.75 E-value=0.011 Score=48.78 Aligned_cols=73 Identities=15% Similarity=0.304 Sum_probs=57.1
Q ss_pred CcEEEEcCCCCCCCHHHHH---HHHccCCCceEEEEeeCCc--------cEEEEEeCCHHHHHHHHHHhCCCccCCCCce
Q psy4057 171 NQILFLTNLPEETSEMMLS---MLFNQFPGFKEVRLVPNRH--------DIAFVEFENEMQSAAAKLALHGFKITPTHAM 239 (246)
Q Consensus 171 ~~~l~v~nL~~~~t~e~l~---~~f~~~G~i~~v~~~~~~~--------g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l 239 (246)
..-+||-+|+..+..+.+. +.|.+||.|..|..-.+.. .-++|+|...++|..||...+|...+ |+.+
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~d-g~~l 155 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDD-GRAL 155 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhh-hhhh
Confidence 3556777788777655443 4588999999888877551 24999999999999999999999999 8887
Q ss_pred EEEee
Q psy4057 240 KISFA 244 (246)
Q Consensus 240 ~v~~a 244 (246)
+.+|+
T Consensus 156 ka~~g 160 (327)
T KOG2068|consen 156 KASLG 160 (327)
T ss_pred HHhhC
Confidence 77664
No 202
>KOG4285|consensus
Probab=94.74 E-value=0.059 Score=43.91 Aligned_cols=64 Identities=11% Similarity=0.135 Sum_probs=48.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCCccEEEEEeCCHHHHHHHHHHhCCCccCCCCc
Q psy4057 171 NQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHA 238 (246)
Q Consensus 171 ~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~ 238 (246)
..-+-|-++|+.-. ..|..+|++||.|++.....+. .|-.|.|.++-+|++||. -||+.|+ |..
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~ng-NwMhirYssr~~A~KALs-kng~ii~-g~v 260 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPSNG-NWMHIRYSSRTHAQKALS-KNGTIID-GDV 260 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecCCCC-ceEEEEecchhHHHHhhh-hcCeeec-cce
Confidence 44555667776433 4578899999999876666333 699999999999999987 6898888 544
No 203
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=94.48 E-value=0.19 Score=31.60 Aligned_cols=55 Identities=13% Similarity=0.169 Sum_probs=45.4
Q ss_pred CCCHHHHHHHHccCCCceEEEEeeCCccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEE
Q psy4057 182 ETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKI 241 (246)
Q Consensus 182 ~~t~e~l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v 241 (246)
.++-++++..+..|+- . ++..++.| =||.|.+..+|.++....+|+.+. +.+|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~--~I~~d~tG-fYIvF~~~~Ea~rC~~~~~~~~~f-~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-D--RIRDDRTG-FYIVFNDSKEAERCFRAEDGTLFF-TYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-c--eEEecCCE-EEEEECChHHHHHHHHhcCCCEEE-EEEEEe
Confidence 5688899999999876 3 44566667 689999999999999999999988 776654
No 204
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=94.42 E-value=0.068 Score=34.57 Aligned_cols=67 Identities=15% Similarity=0.168 Sum_probs=38.0
Q ss_pred EEEe-cCCChhhhHHHHHHHhhccCCe-----eEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEc
Q psy4057 13 FVYV-THISSTDLKKSLYAIFSQFGQI-----MDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYS 85 (246)
Q Consensus 13 ~l~V-~nl~~~~~e~~l~~~F~~fG~i-----~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a 85 (246)
++|| .+=-..++..+|..++..-+.| -.|.+ ...|+||+-... .|..++..|++..+.|++++|+.|
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I-----~~~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDI-----FDNFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE------SS-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEE-----eeeEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4566 2333455667777777766444 45555 457899998765 889999999999999999999864
No 205
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=94.40 E-value=0.36 Score=31.16 Aligned_cols=59 Identities=17% Similarity=0.214 Sum_probs=36.0
Q ss_pred CCCCHHHHHHHHccCCCc-----eEEEEeeCCccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEee
Q psy4057 181 EETSEMMLSMLFNQFPGF-----KEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFA 244 (246)
Q Consensus 181 ~~~t~e~l~~~f~~~G~i-----~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~a 244 (246)
..++..+|-.++...+.| -+|.+.. .|+||+-.. +.|..+++.|++..+. |++++|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~---~~S~vev~~-~~a~~v~~~l~~~~~~-gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFD---NFSFVEVPE-EVAEKVLEALNGKKIK-GKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-S---S-EEEEE-T-T-HHHHHHHHTT--SS-S----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEee---eEEEEEECH-HHHHHHHHHhcCCCCC-CeeEEEEEC
Confidence 377888899998888777 2344433 379999874 5888999999999999 999999865
No 206
>KOG2253|consensus
Probab=94.20 E-value=0.072 Score=47.87 Aligned_cols=72 Identities=15% Similarity=0.193 Sum_probs=61.1
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCCccEEEEEeCCHHHHHHHHHHhCCCccCCCCceE
Q psy4057 164 GVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMK 240 (246)
Q Consensus 164 ~~~~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~ 240 (246)
.....++..++||+|+...+.++-++.+...+|.|....... |||..|....-+..|+..|+-..++ |..+.
T Consensus 33 ~~~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~----fgf~~f~~~~~~~ra~r~~t~~~~~-~~kl~ 104 (668)
T KOG2253|consen 33 VFQPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK----FGFCEFLKHIGDLRASRLLTELNID-DQKLI 104 (668)
T ss_pred cccCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh----hcccchhhHHHHHHHHHHhcccCCC-cchhh
Confidence 344567899999999999999999999999999997655443 9999999999999999999998887 55443
No 207
>KOG2253|consensus
Probab=93.67 E-value=0.07 Score=47.94 Aligned_cols=75 Identities=16% Similarity=0.123 Sum_probs=65.5
Q ss_pred cccCCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEE
Q psy4057 4 ILAHICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83 (246)
Q Consensus 4 ~~~~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~ 83 (246)
..+..+|..++||+|+.+.+..+-+..+...+|-|-++.... |||..|....-+..|+..++...+.|..+.+.
T Consensus 33 ~~~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~ 106 (668)
T KOG2253|consen 33 VFQPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK------FGFCEFLKHIGDLRASRLLTELNIDDQKLIEN 106 (668)
T ss_pred cccCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh------hcccchhhHHHHHHHHHHhcccCCCcchhhcc
Confidence 456788999999999999999999999999999887764333 89999999999999999999999988887765
Q ss_pred E
Q psy4057 84 Y 84 (246)
Q Consensus 84 ~ 84 (246)
.
T Consensus 107 ~ 107 (668)
T KOG2253|consen 107 V 107 (668)
T ss_pred c
Confidence 5
No 208
>KOG2135|consensus
Probab=93.66 E-value=0.046 Score=47.16 Aligned_cols=60 Identities=25% Similarity=0.313 Sum_probs=50.9
Q ss_pred hHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEccC
Q psy4057 24 LKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKT 87 (246)
Q Consensus 24 ~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~~ 87 (246)
+.++|-..|.+||.|+.|.+-.. --.|.|+|.+..+|-.|.. ..+..|.|+.|+|.|...
T Consensus 386 t~a~ln~hfA~fG~i~n~qv~~~---~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 386 TIADLNPHFAQFGEIENIQVDYS---SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred hHhhhhhhhhhcCccccccccCc---hhhheeeeeccccccchhc-cccceecCceeEEEEecC
Confidence 56788999999999999977432 3459999999999988876 788999999999999754
No 209
>KOG4574|consensus
Probab=93.16 E-value=0.068 Score=49.40 Aligned_cols=70 Identities=27% Similarity=0.394 Sum_probs=59.6
Q ss_pred EecCCChhhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCcc--CCeeEEEEEccC
Q psy4057 15 YVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPF--YDKPMRIQYSKT 87 (246)
Q Consensus 15 ~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~--~g~~l~v~~a~~ 87 (246)
++.|.+-..+-.-|..+|++||.|.+.+.+++. ..|.|.|...++|-.|.+.++|..+ -|-+.+|.+|+.
T Consensus 302 ~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~---N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 302 SLENNAVNLTSSSLATLCSDYGSVASAWTLRDL---NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhcccccchHHHHHHHHHhhcchhhheecccc---cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 345666777888899999999999998777654 5599999999999999999999776 788999999865
No 210
>KOG4285|consensus
Probab=92.72 E-value=0.28 Score=40.11 Aligned_cols=64 Identities=16% Similarity=0.197 Sum_probs=49.0
Q ss_pred ecCCChhhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEE-EEE
Q psy4057 16 VTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMR-IQY 84 (246)
Q Consensus 16 V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~-v~~ 84 (246)
|.+.+.... .-+..+|++||.|.+.... +.-++-.|.|.+.-+|++|+. .||..|.|..|. |..
T Consensus 202 VfGFppg~~-s~vL~~F~~cG~Vvkhv~~---~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkp 266 (350)
T KOG4285|consen 202 VFGFPPGQV-SIVLNLFSRCGEVVKHVTP---SNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKP 266 (350)
T ss_pred EeccCccch-hHHHHHHHhhCeeeeeecC---CCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeee
Confidence 356655443 3567899999999987553 466899999999999999998 788888877644 444
No 211
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=92.30 E-value=0.76 Score=28.94 Aligned_cols=55 Identities=15% Similarity=0.291 Sum_probs=43.9
Q ss_pred hhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEE
Q psy4057 22 TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRI 82 (246)
Q Consensus 22 ~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v 82 (246)
.++-++++..+..|+ -..|..-+ .| =||.|.+..+|+++....+|..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~-~~~I~~d~----tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR-WDRIRDDR----TG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCC-cceEEecC----CE-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 346688999999999 56654433 24 589999999999999999999998887754
No 212
>KOG2135|consensus
Probab=92.24 E-value=0.083 Score=45.68 Aligned_cols=73 Identities=21% Similarity=0.239 Sum_probs=58.5
Q ss_pred CCcEEEEcCCCCCC-CHHHHHHHHccCCCceEEEEeeCCccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEeec
Q psy4057 170 PNQILFLTNLPEET-SEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAK 245 (246)
Q Consensus 170 ~~~~l~v~nL~~~~-t~e~l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~ak 245 (246)
..+.|-+.-.|+.. +..+|...|.+||.|..|.+-... --|+|+|.+..+|-.| ...++..|. |+.|+|-|-+
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~-~~a~vTF~t~aeag~a-~~s~~avln-nr~iKl~whn 444 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS-LHAVVTFKTRAEAGEA-YASHGAVLN-NRFIKLFWHN 444 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCch-hhheeeeeccccccch-hccccceec-CceeEEEEec
Confidence 45666666666644 678999999999999999988773 4599999999999776 447888999 9999998843
No 213
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=92.21 E-value=0.24 Score=33.06 Aligned_cols=26 Identities=12% Similarity=0.238 Sum_probs=22.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHc
Q psy4057 168 QPPNQILFLTNLPEETSEMMLSMLFN 193 (246)
Q Consensus 168 ~~~~~~l~v~nL~~~~t~e~l~~~f~ 193 (246)
....+++.|.|||....+|+|++..+
T Consensus 49 ~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 49 GVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred cccCCEEEEeCCCCCCChhhheeeEE
Confidence 44688999999999999999988754
No 214
>KOG2591|consensus
Probab=90.88 E-value=0.51 Score=41.88 Aligned_cols=68 Identities=15% Similarity=0.234 Sum_probs=50.6
Q ss_pred CCcEEEe-cCCChhhhHHHHHHHhhc--cCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcC--CccCCeeEE
Q psy4057 10 VTNFVYV-THISSTDLKKSLYAIFSQ--FGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQG--FPFYDKPMR 81 (246)
Q Consensus 10 ~~~~l~V-~nl~~~~~e~~l~~~F~~--fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng--~~~~g~~l~ 81 (246)
.+|||.| +.||...-+++++.||+. +-++.+|..- .+.+ =||+|.+..+|+.|...|.. .+|.|++|.
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa---~N~n-WyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFA---HNDN-WYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeee---ecCc-eEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 3556655 999999999999999986 4556665332 1222 69999999999999887754 567777753
No 215
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=87.65 E-value=0.87 Score=33.61 Aligned_cols=64 Identities=16% Similarity=0.096 Sum_probs=48.2
Q ss_pred CCChhhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEccC
Q psy4057 18 HISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKT 87 (246)
Q Consensus 18 nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~~ 87 (246)
+++.......+.......|.+.-..+ ..++..++|.+.+++.+++. .....+.|..+.+....+
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~l-----~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~ 91 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRDL-----GDNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSP 91 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEEe-----CCCeEEEEEEeccceeEEEe-cccccccccchhhhhhcc
Confidence 35567777778887777775554444 56899999999999999988 556777888888876543
No 216
>KOG2318|consensus
Probab=84.95 E-value=5.7 Score=35.74 Aligned_cols=79 Identities=18% Similarity=0.275 Sum_probs=61.3
Q ss_pred CCCCcEEEecCCCh-hhhHHHHHHHhhcc----CCeeEEEEccCC-------------C---------------------
Q psy4057 8 ICVTNFVYVTHISS-TDLKKSLYAIFSQF----GQIMDIVALKTL-------------K--------------------- 48 (246)
Q Consensus 8 ~~~~~~l~V~nl~~-~~~e~~l~~~F~~f----G~i~~v~~~~~~-------------~--------------------- 48 (246)
..++++|-|.||.- .+...+|.-+|+.| |.|.+|.|+.+. .
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 45688999999865 35566788888877 699999988531 1
Q ss_pred ---------------Cc-cEEEEEEcCHHHHHHHHHHhcCCcc--CCeeEEEEEcc
Q psy4057 49 ---------------MR-GQAFVIFKEIASATNALRSMQGFPF--YDKPMRIQYSK 86 (246)
Q Consensus 49 ---------------~k-g~aFV~f~~~~~A~~Ai~~lng~~~--~g~~l~v~~a~ 86 (246)
-+ -||.|+|.++++|.+..+.++|+.| -|..|.++|..
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIP 306 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIP 306 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecC
Confidence 01 3799999999999999999999998 46667777753
No 217
>KOG4483|consensus
Probab=84.63 E-value=2.1 Score=36.55 Aligned_cols=56 Identities=18% Similarity=0.231 Sum_probs=49.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHccCCCc-eEEEEeeCCccEEEEEeCCHHHHHHHHHH
Q psy4057 170 PNQILFLTNLPEETSEMMLSMLFNQFPGF-KEVRLVPNRHDIAFVEFENEMQSAAAKLA 227 (246)
Q Consensus 170 ~~~~l~v~nL~~~~t~e~l~~~f~~~G~i-~~v~~~~~~~g~afV~f~~~~~A~~Al~~ 227 (246)
-.++|-|.++|...-.+||...|+.|++- -+|.++.+. .||-.|.+...|..||..
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt--halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT--HALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc--eeEEeecchHHHHHHhhc
Confidence 57899999999999999999999999775 788888886 599999999999999875
No 218
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=83.22 E-value=1.7 Score=35.60 Aligned_cols=74 Identities=14% Similarity=0.229 Sum_probs=56.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC------------ccEEEEEeCCHHHHHH----HHHHhCC--C
Q psy4057 170 PNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR------------HDIAFVEFENEMQSAA----AKLALHG--F 231 (246)
Q Consensus 170 ~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~------------~g~afV~f~~~~~A~~----Al~~l~g--~ 231 (246)
.++.|.+.|+..+++-..+-..|.+||.|++|.++.+. .....+.|-+.+.+.. .++.|.- +
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 48889999999999999999999999999999999976 2468888998877653 3333332 2
Q ss_pred ccCCCCceEEEee
Q psy4057 232 KITPTHAMKISFA 244 (246)
Q Consensus 232 ~i~~g~~l~v~~a 244 (246)
.+. ...|.++|.
T Consensus 94 ~L~-S~~L~lsFV 105 (309)
T PF10567_consen 94 KLK-SESLTLSFV 105 (309)
T ss_pred hcC-CcceeEEEE
Confidence 345 677777764
No 219
>KOG2318|consensus
Probab=82.70 E-value=7.2 Score=35.11 Aligned_cols=67 Identities=21% Similarity=0.249 Sum_probs=54.2
Q ss_pred CCCCcEEEEcCCCC-CCCHHHHHHHHccC----CCceEEEEeeCC-----------------------------------
Q psy4057 168 QPPNQILFLTNLPE-ETSEMMLSMLFNQF----PGFKEVRLVPNR----------------------------------- 207 (246)
Q Consensus 168 ~~~~~~l~v~nL~~-~~t~e~l~~~f~~~----G~i~~v~~~~~~----------------------------------- 207 (246)
...+++|=|.||.- .+.-++|.-+|+.| |.|.+|.|.+..
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 44688999999964 67788888888755 588888876621
Q ss_pred --------c---------cEEEEEeCCHHHHHHHHHHhCCCccC
Q psy4057 208 --------H---------DIAFVEFENEMQSAAAKLALHGFKIT 234 (246)
Q Consensus 208 --------~---------g~afV~f~~~~~A~~Al~~l~g~~i~ 234 (246)
+ =||+|+|.+++.|......++|..|.
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfE 294 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFE 294 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceec
Confidence 0 17999999999999999999999997
No 220
>KOG4019|consensus
Probab=82.07 E-value=1.3 Score=33.67 Aligned_cols=73 Identities=21% Similarity=0.296 Sum_probs=54.5
Q ss_pred CcEEEEcCCCCCCCH-----HHHHHHHccCCCceEEEEeeCCccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEee
Q psy4057 171 NQILFLTNLPEETSE-----MMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFA 244 (246)
Q Consensus 171 ~~~l~v~nL~~~~t~-----e~l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~a 244 (246)
...+++++++..+-. ....++|.+|.+....++.+.- +..-|.|.+.+.|..|.-.++++.|.++..++..||
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsf-rrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfa 87 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSF-RRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFA 87 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhh-ceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEc
Confidence 455777777765432 2445777887777766666655 357889999999999999999999994448888776
No 221
>KOG2891|consensus
Probab=79.71 E-value=0.86 Score=36.94 Aligned_cols=65 Identities=28% Similarity=0.364 Sum_probs=43.0
Q ss_pred CCCCcEEEEcCCCCC------------CCHHHHHHHHccCCCceEEEEee-CC--------------ccE---------E
Q psy4057 168 QPPNQILFLTNLPEE------------TSEMMLSMLFNQFPGFKEVRLVP-NR--------------HDI---------A 211 (246)
Q Consensus 168 ~~~~~~l~v~nL~~~------------~t~e~l~~~f~~~G~i~~v~~~~-~~--------------~g~---------a 211 (246)
+....++++.+||-. .+++.|+..|+.||.|..|.++. |+ +|| |
T Consensus 146 gerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffea 225 (445)
T KOG2891|consen 146 GERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEA 225 (445)
T ss_pred CCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHH
Confidence 334566777777643 35788999999999998888765 21 233 4
Q ss_pred EEEeCCHHHHHHHHHHhCCCc
Q psy4057 212 FVEFENEMQSAAAKLALHGFK 232 (246)
Q Consensus 212 fV~f~~~~~A~~Al~~l~g~~ 232 (246)
||.|..-.--..|+.+|-|..
T Consensus 226 yvqfmeykgfa~amdalr~~k 246 (445)
T KOG2891|consen 226 YVQFMEYKGFAQAMDALRGMK 246 (445)
T ss_pred HHHHHHHHhHHHHHHHHhcch
Confidence 455555555566777777643
No 222
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=74.12 E-value=12 Score=24.83 Aligned_cols=57 Identities=16% Similarity=0.162 Sum_probs=39.5
Q ss_pred EEecCCChhhhHHHHHHHhhc-cC-CeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHh
Q psy4057 14 VYVTHISSTDLKKSLYAIFSQ-FG-QIMDIVALKTLKMRGQAFVIFKEIASATNALRSM 70 (246)
Q Consensus 14 l~V~nl~~~~~e~~l~~~F~~-fG-~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~l 70 (246)
-|+..++.+.++.+++..++. || .|.+|..+.......=|+|++....+|......+
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHhh
Confidence 445556666777777777765 45 4667766555444455999999999998876544
No 223
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=72.59 E-value=14 Score=23.99 Aligned_cols=57 Identities=14% Similarity=0.160 Sum_probs=39.6
Q ss_pred EEecCCChhhhHHHHHHHhhc-cC-CeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHh
Q psy4057 14 VYVTHISSTDLKKSLYAIFSQ-FG-QIMDIVALKTLKMRGQAFVIFKEIASATNALRSM 70 (246)
Q Consensus 14 l~V~nl~~~~~e~~l~~~F~~-fG-~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~l 70 (246)
-|+..++.+.++.+++..++. || .|.+|..+.......=|||++...++|...-.++
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHHhh
Confidence 456666777788888877775 45 4666655554444455999999999998765544
No 224
>KOG4410|consensus
Probab=72.15 E-value=8.1 Score=31.64 Aligned_cols=49 Identities=16% Similarity=0.139 Sum_probs=37.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHccCCCc-eEEEEeeCCccEEEEEeCCHH
Q psy4057 170 PNQILFLTNLPEETSEMMLSMLFNQFPGF-KEVRLVPNRHDIAFVEFENEM 219 (246)
Q Consensus 170 ~~~~l~v~nL~~~~t~e~l~~~f~~~G~i-~~v~~~~~~~g~afV~f~~~~ 219 (246)
...-++++||+.+..-.||++.+..-|-+ .++.+- +..|-||+.|.+..
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk-g~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK-GHFGKCFLHFGNRK 378 (396)
T ss_pred cccceeeccCccccchHHHHHHHHhcCCCceeEeee-cCCcceeEecCCcc
Confidence 46679999999999999999999887766 333332 33467999997743
No 225
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=69.70 E-value=8.6 Score=27.20 Aligned_cols=45 Identities=27% Similarity=0.417 Sum_probs=24.5
Q ss_pred EEEEcCCCCC---------CCHHHHHHHHccCCCceEEEEeeCC---ccEEEEEeCCH
Q psy4057 173 ILFLTNLPEE---------TSEMMLSMLFNQFPGFKEVRLVPNR---HDIAFVEFENE 218 (246)
Q Consensus 173 ~l~v~nL~~~---------~t~e~l~~~f~~~G~i~~v~~~~~~---~g~afV~f~~~ 218 (246)
+++|.|++.. .+.+.|.+.|+.|..++ ++.+.+. .|+++|+|.+.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~gh~g~aiv~F~~~ 66 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQGHTGFAIVEFNKD 66 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETTEEEEEEEEE--SS
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCCCCcEEEEEEECCC
Confidence 4667777543 35578999999999975 5555544 57999999753
No 226
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=66.90 E-value=8.6 Score=32.28 Aligned_cols=43 Identities=26% Similarity=0.255 Sum_probs=33.1
Q ss_pred EEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEccCCccccccccC
Q psy4057 53 AFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKG 97 (246)
Q Consensus 53 aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~~~~~~~~~~~~ 97 (246)
|||+|++..+|..|.+.+.... ++.+.+..|.+..|......+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP~DI~W~NL~ 43 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEPDDIIWENLS 43 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCcccccccccC
Confidence 7999999999999999554333 366788898888877765543
No 227
>KOG2295|consensus
Probab=65.16 E-value=1.8 Score=38.48 Aligned_cols=65 Identities=22% Similarity=0.300 Sum_probs=52.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccC
Q psy4057 170 PNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKIT 234 (246)
Q Consensus 170 ~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~ 234 (246)
..+.||++|+++..+-.+|..+|..+..+.++.+.... ..++.|.|..--....|+.+|||..+.
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~ 299 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLR 299 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccc
Confidence 37889999999999999999999999998888877654 246889998666666677778887655
No 228
>KOG4213|consensus
Probab=64.74 E-value=14 Score=28.11 Aligned_cols=53 Identities=19% Similarity=0.145 Sum_probs=39.5
Q ss_pred cEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC----CCccEEEEEEcCHHHHHHHHH
Q psy4057 12 NFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL----KMRGQAFVIFKEIASATNALR 68 (246)
Q Consensus 12 ~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~----~~kg~aFV~f~~~~~A~~Ai~ 68 (246)
+++|.. +.+..-++|..+-+ |.+..|.+.+.+ ..+|--||+|.+.+.|..+++
T Consensus 112 r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~ 168 (205)
T KOG4213|consen 112 RTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDD 168 (205)
T ss_pred hhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhh
Confidence 455555 44555556666666 889999887654 457999999999999999876
No 229
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=63.90 E-value=8.5 Score=27.23 Aligned_cols=40 Identities=18% Similarity=0.121 Sum_probs=24.8
Q ss_pred hHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHH
Q psy4057 24 LKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASA 63 (246)
Q Consensus 24 ~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A 63 (246)
+-++|.+.|+.|..+....+.....+.|++.|.|.+.-+.
T Consensus 30 ~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~G 69 (116)
T PF03468_consen 30 SNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWSG 69 (116)
T ss_dssp -SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSHHH
T ss_pred CHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCChHH
Confidence 4467889999999876554444446789999999987655
No 230
>KOG4019|consensus
Probab=62.01 E-value=10 Score=28.92 Aligned_cols=72 Identities=14% Similarity=0.218 Sum_probs=50.6
Q ss_pred EEEecCCChhhh-----HHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccCCe-eEEEEEcc
Q psy4057 13 FVYVTHISSTDL-----KKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK-PMRIQYSK 86 (246)
Q Consensus 13 ~l~V~nl~~~~~-----e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~-~l~v~~a~ 86 (246)
++.+.++..++. ......+|.+|-+.....++ ++.+.--|-|.+++.|..|.-.+++..|.|+ .+..-++.
T Consensus 12 ~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~l---rsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ 88 (193)
T KOG4019|consen 12 AIIACDIHEEVFVNREDKALFENLFRQINEDATFQLL---RSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQ 88 (193)
T ss_pred eeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHH---HhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEcc
Confidence 345555555432 33456677766655554333 4667788999999999999999999999888 67777764
Q ss_pred C
Q psy4057 87 T 87 (246)
Q Consensus 87 ~ 87 (246)
.
T Consensus 89 ~ 89 (193)
T KOG4019|consen 89 P 89 (193)
T ss_pred C
Confidence 3
No 231
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=61.99 E-value=37 Score=22.60 Aligned_cols=49 Identities=14% Similarity=0.149 Sum_probs=31.5
Q ss_pred CCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEc
Q psy4057 10 VTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFK 58 (246)
Q Consensus 10 ~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~ 58 (246)
+..-|||++++..+.+.-...+....++=.-+.+..+....||+|-+.-
T Consensus 24 i~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~neqG~~~~t~G 72 (86)
T PF09707_consen 24 IRPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDNNEQGFDFRTLG 72 (86)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccCCCCCEEEEEeC
Confidence 3456999999998877544444443443333444555567899998873
No 232
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=60.79 E-value=24 Score=21.85 Aligned_cols=20 Identities=15% Similarity=0.285 Sum_probs=16.0
Q ss_pred HHHHHHHccCCCceEEEEee
Q psy4057 186 MMLSMLFNQFPGFKEVRLVP 205 (246)
Q Consensus 186 e~l~~~f~~~G~i~~v~~~~ 205 (246)
.+|++.|+..|.|.-+.+-.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~ 28 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNP 28 (62)
T ss_pred HHHHHHHHhcCcEEEEEEcc
Confidence 57999999999996666544
No 233
>KOG2295|consensus
Probab=54.89 E-value=1.8 Score=38.54 Aligned_cols=70 Identities=10% Similarity=0.089 Sum_probs=56.4
Q ss_pred CCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC---CCccEEEEEEcCHHHHHHHHHHhcCCccC
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL---KMRGQAFVIFKEIASATNALRSMQGFPFY 76 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~ 76 (246)
++...++||+.|+++..+.++|..+|+.+--...+.+.... +...++.|+|+-.-....|+..||+.-+.
T Consensus 227 n~hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~ 299 (648)
T KOG2295|consen 227 NTHKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLR 299 (648)
T ss_pred hhhHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccc
Confidence 34556789999999999999999999999877777654433 45577999999888888888888886654
No 234
>KOG4410|consensus
Probab=54.20 E-value=21 Score=29.34 Aligned_cols=52 Identities=15% Similarity=0.051 Sum_probs=38.4
Q ss_pred CCCcEEEecCCChhhhHHHHHHHhhccCCee-EEEEccCCCCccEEEEEEcCHHHH
Q psy4057 9 CVTNFVYVTHISSTDLKKSLYAIFSQFGQIM-DIVALKTLKMRGQAFVIFKEIASA 63 (246)
Q Consensus 9 ~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~-~v~~~~~~~~kg~aFV~f~~~~~A 63 (246)
+...-||++||+.+....||+.-..+-|-+- ++.. ....|-||+.|-+...+
T Consensus 328 ~~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw---kg~~~k~flh~~~~~~~ 380 (396)
T KOG4410|consen 328 GAKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW---KGHFGKCFLHFGNRKGV 380 (396)
T ss_pred ccccceeeccCccccchHHHHHHHHhcCCCceeEee---ecCCcceeEecCCccCC
Confidence 4456799999999999999999999888432 2211 13567799999886443
No 235
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=51.21 E-value=55 Score=22.35 Aligned_cols=51 Identities=22% Similarity=0.090 Sum_probs=29.9
Q ss_pred CCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCH
Q psy4057 10 VTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEI 60 (246)
Q Consensus 10 ~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~ 60 (246)
...-|||++++..+.+.--..+-+.+++=.-+.+..+....||+|-++...
T Consensus 26 v~~GVyVg~~S~rVRd~lW~~v~~~~~~G~avmv~~~~~eqG~~~~t~G~~ 76 (97)
T PRK11558 26 VRAGVYVGDVSRRIREMIWQQVTQLAEEGNVVMAWATNTESGFEFQTFGEN 76 (97)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHHhCCCCcEEEEEcCCCCCCcEEEecCCC
Confidence 345699999988776643333334343322223345555669998887643
No 236
>KOG4008|consensus
Probab=46.97 E-value=19 Score=28.78 Aligned_cols=37 Identities=24% Similarity=0.345 Sum_probs=31.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEE
Q psy4057 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRL 203 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~ 203 (246)
..+...+||+-|+|..+|++-|.++.++.|.+..+-+
T Consensus 36 ~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y 72 (261)
T KOG4008|consen 36 NSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLY 72 (261)
T ss_pred ccccccceeeecccccccHHHHHHHHHHhhhhhheec
Confidence 4557899999999999999999999999997755443
No 237
>KOG4365|consensus
Probab=45.10 E-value=3.4 Score=35.84 Aligned_cols=75 Identities=11% Similarity=-0.068 Sum_probs=58.9
Q ss_pred cEEEecCCChhhhHHHHHHHhhccCCeeEEEEcc---CCCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEccC
Q psy4057 12 NFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALK---TLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKT 87 (246)
Q Consensus 12 ~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~---~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~~ 87 (246)
.+.|+.+++....++++.-+|..||.|..+...+ ++..+-.+|++-.. ..|.++|..+....++|..+++..+..
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCch
Confidence 4456788889999999999999999888875544 33566778888764 567888888888888998888887643
No 238
>KOG3424|consensus
Probab=44.43 E-value=90 Score=22.10 Aligned_cols=48 Identities=17% Similarity=0.360 Sum_probs=33.4
Q ss_pred cCCChhhhHHHHHHHhhccCCeeEEEEccC----CCCccEEEEEEcCHHHHHH
Q psy4057 17 THISSTDLKKSLYAIFSQFGQIMDIVALKT----LKMRGQAFVIFKEIASATN 65 (246)
Q Consensus 17 ~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~----~~~kg~aFV~f~~~~~A~~ 65 (246)
.++|.+...+.|-+++.---+...+.-.++ +++.|||.| |.+.+.|.+
T Consensus 33 a~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akk 84 (132)
T KOG3424|consen 33 ANVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKK 84 (132)
T ss_pred CCCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHh
Confidence 578888888888888887665655554553 278889987 455555543
No 239
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=40.58 E-value=1.1e+02 Score=20.41 Aligned_cols=46 Identities=22% Similarity=0.270 Sum_probs=34.1
Q ss_pred HHHHHHHHccC-CCceEEEEeeCCcc-EEEEEeCCHHHHHHHHHHhCC
Q psy4057 185 EMMLSMLFNQF-PGFKEVRLVPNRHD-IAFVEFENEMQSAAAKLALHG 230 (246)
Q Consensus 185 ~e~l~~~f~~~-G~i~~v~~~~~~~g-~afV~f~~~~~A~~Al~~l~g 230 (246)
.+.++++++.. |.++++.+..++.. ..++++.|.+.|.++.-.+..
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l~i~~ 69 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTLGEYDFVVIVEAPDDETAAAASLAIRS 69 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEecCCCCEEEEEEcCCHHHHHHHHHHHHc
Confidence 35566777666 56788999988854 588889999988887766544
No 240
>PF14893 PNMA: PNMA
Probab=40.52 E-value=21 Score=30.32 Aligned_cols=50 Identities=18% Similarity=0.367 Sum_probs=32.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHc----cCCCce---EEEEeeCCccEEEEEeCC
Q psy4057 168 QPPNQILFLTNLPEETSEMMLSMLFN----QFPGFK---EVRLVPNRHDIAFVEFEN 217 (246)
Q Consensus 168 ~~~~~~l~v~nL~~~~t~e~l~~~f~----~~G~i~---~v~~~~~~~g~afV~f~~ 217 (246)
..+-+.|.|.++|.+|+++++.+.+. ..|... ++..-.++...++|+|..
T Consensus 15 ~~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e 71 (331)
T PF14893_consen 15 VDPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAE 71 (331)
T ss_pred cChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeeccc
Confidence 44678899999999999988887754 344432 111122233468888863
No 241
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=38.87 E-value=55 Score=21.46 Aligned_cols=35 Identities=14% Similarity=0.103 Sum_probs=25.1
Q ss_pred CceEEEEeeCCccEEEEEeCCHHHHHHHHHHhCCC
Q psy4057 197 GFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGF 231 (246)
Q Consensus 197 ~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~ 231 (246)
.|.++....+-+||-||+=.+..+...|++.+-+.
T Consensus 33 ~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~i 67 (84)
T PF03439_consen 33 NIYSIFAPDSLKGYIYVEAERESDVKEAIRGIRHI 67 (84)
T ss_dssp ---EEEE-TTSTSEEEEEESSHHHHHHHHTT-TTE
T ss_pred ceEEEEEeCCCceEEEEEeCCHHHHHHHHhcccce
Confidence 56777777777899999999999999998776553
No 242
>PRK11901 hypothetical protein; Reviewed
Probab=38.28 E-value=1.1e+02 Score=25.86 Aligned_cols=56 Identities=11% Similarity=0.143 Sum_probs=36.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC---cc-EEEEE--eCCHHHHHHHHHHhCC
Q psy4057 171 NQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR---HD-IAFVE--FENEMQSAAAKLALHG 230 (246)
Q Consensus 171 ~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~---~g-~afV~--f~~~~~A~~Al~~l~g 230 (246)
.-+|-|-.+. .++.|..+..+++ +..+++.... +. |.+|. |.+.++|..|+..|-.
T Consensus 245 ~YTLQL~Aas---~~~~L~~f~~~~~-L~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 245 HYTLQLSSAS---RSDTLNAYAKKQN-LSHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CeEEEeecCC---CHHHHHHHHHHcC-cCceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCCH
Confidence 4455555443 5788888887775 4555555532 23 33332 7899999999998743
No 243
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=36.77 E-value=5 Score=33.35 Aligned_cols=38 Identities=13% Similarity=0.134 Sum_probs=25.6
Q ss_pred ccccCCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEE
Q psy4057 3 IILAHICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDI 41 (246)
Q Consensus 3 ~~~~~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v 41 (246)
++++..+|+..|+|.+-..+- -..+.++|++||.+.++
T Consensus 58 ~ll~~~~~g~~i~v~g~~~~g-~~s~~k~l~~~~~~~~~ 95 (300)
T COG2813 58 QLLARLPPGGEIVVVGEKRDG-VRSAEKMLEKYGGPTKT 95 (300)
T ss_pred HHHhhCCCCCeEEEEecccch-HHHHHHHHHHhcCcccc
Confidence 345677888888885543332 34566888888877765
No 244
>PHA01632 hypothetical protein
Probab=36.32 E-value=36 Score=20.42 Aligned_cols=20 Identities=15% Similarity=0.451 Sum_probs=16.0
Q ss_pred EEEcCCCCCCCHHHHHHHHc
Q psy4057 174 LFLTNLPEETSEMMLSMLFN 193 (246)
Q Consensus 174 l~v~nL~~~~t~e~l~~~f~ 193 (246)
+.|..+|...|+++|+..+.
T Consensus 19 ilieqvp~kpteeelrkvlp 38 (64)
T PHA01632 19 ILIEQVPQKPTEEELRKVLP 38 (64)
T ss_pred EehhhcCCCCCHHHHHHHHH
Confidence 34467899999999998765
No 245
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=35.55 E-value=26 Score=22.13 Aligned_cols=25 Identities=12% Similarity=0.135 Sum_probs=18.7
Q ss_pred CCCcEEEecCCChhhhHHHHHHHhh
Q psy4057 9 CVTNFVYVTHISSTDLKKSLYAIFS 33 (246)
Q Consensus 9 ~~~~~l~V~nl~~~~~e~~l~~~F~ 33 (246)
..++++|||++|..+..+.=..++.
T Consensus 25 ~tSr~vflG~IP~~W~~~~~~~~~k 49 (67)
T PF15407_consen 25 LTSRRVFLGPIPEIWLQDHRKSWYK 49 (67)
T ss_pred HcCceEEECCCChHHHHcCcchHHH
Confidence 3589999999999888766444443
No 246
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=35.11 E-value=31 Score=18.80 Aligned_cols=17 Identities=29% Similarity=0.372 Sum_probs=10.3
Q ss_pred CCCCHHHHHHHHccCCC
Q psy4057 181 EETSEMMLSMLFNQFPG 197 (246)
Q Consensus 181 ~~~t~e~l~~~f~~~G~ 197 (246)
.++++++|++.|.+.+.
T Consensus 19 ~Dtd~~~Lk~vF~~i~~ 35 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIKK 35 (36)
T ss_dssp S---HHHHHHHHHCS--
T ss_pred ccCCHHHHHHHHHHhcc
Confidence 36789999999987653
No 247
>KOG4365|consensus
Probab=34.96 E-value=5.7 Score=34.50 Aligned_cols=73 Identities=7% Similarity=-0.112 Sum_probs=51.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCCc-----cEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEeec
Q psy4057 171 NQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRH-----DIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAK 245 (246)
Q Consensus 171 ~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~~-----g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~ak 245 (246)
+...++..+|...++.++.-+|+.||.|..+.+.+.-. -.+|+.-.. ..|+.+++.+--..++ |..+++..|+
T Consensus 3 s~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~-~~~~r~~~~~ 80 (572)
T KOG4365|consen 3 SMKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTF-ESQDRKAVSP 80 (572)
T ss_pred chhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhh-hhhhhhhcCc
Confidence 34456788999999999999999999999888776432 246665442 3456666666556666 6666666554
No 248
>KOG1295|consensus
Probab=32.67 E-value=58 Score=28.01 Aligned_cols=64 Identities=17% Similarity=0.258 Sum_probs=45.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHccCCC-ceEEEEeeCC-------ccEEEEEeCCHHHHHHHHHHhCCCccC
Q psy4057 171 NQILFLTNLPEETSEMMLSMLFNQFPG-FKEVRLVPNR-------HDIAFVEFENEMQSAAAKLALHGFKIT 234 (246)
Q Consensus 171 ~~~l~v~nL~~~~t~e~l~~~f~~~G~-i~~v~~~~~~-------~g~afV~f~~~~~A~~Al~~l~g~~i~ 234 (246)
-..+.|.+||...++++|.+-...|-. +....+.+.. .+.++|.|.+.++...=...++|+.|-
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 456778899999999988877766432 2333333322 356999999999877766778887764
No 249
>KOG2891|consensus
Probab=32.40 E-value=49 Score=27.12 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=18.2
Q ss_pred hhHHHHHHHhhccCCeeEEEEc
Q psy4057 23 DLKKSLYAIFSQFGQIMDIVAL 44 (246)
Q Consensus 23 ~~e~~l~~~F~~fG~i~~v~~~ 44 (246)
-+++-|...|..||.|..|.|.
T Consensus 173 pse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 173 PSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred ChHHHHHHHHHHhccceecCCc
Confidence 3567799999999999988665
No 250
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=30.65 E-value=88 Score=19.74 Aligned_cols=25 Identities=12% Similarity=0.102 Sum_probs=20.7
Q ss_pred cEEEEEEcCHHHHHHHHHHhcCCcc
Q psy4057 51 GQAFVIFKEIASATNALRSMQGFPF 75 (246)
Q Consensus 51 g~aFV~f~~~~~A~~Ai~~lng~~~ 75 (246)
.+.+|.|.+..+|-+|-+.|....+
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi 26 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGI 26 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCC
Confidence 5789999999999999887765544
No 251
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=30.04 E-value=2.4e+02 Score=24.72 Aligned_cols=84 Identities=17% Similarity=0.286 Sum_probs=0.0
Q ss_pred cccccCCCCCcEEEecCCChhhhHHH-HHHHhhcc----CCeeEEEEccCC----CC-----------------------
Q psy4057 2 NIILAHICVTNFVYVTHISSTDLKKS-LYAIFSQF----GQIMDIVALKTL----KM----------------------- 49 (246)
Q Consensus 2 ~~~~~~~~~~~~l~V~nl~~~~~e~~-l~~~F~~f----G~i~~v~~~~~~----~~----------------------- 49 (246)
+..+....++++|-|-||.-+-.... |+..|+.| |.|..|.|+.+. +.
T Consensus 137 g~~pe~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssq 216 (622)
T COG5638 137 GAVPEEGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQ 216 (622)
T ss_pred cCccCCCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchh
Q ss_pred -----------------------------------------ccEEEEEEcCHHHHHHHHHHhcCCcc--CCeeEEEEEc
Q psy4057 50 -----------------------------------------RGQAFVIFKEIASATNALRSMQGFPF--YDKPMRIQYS 85 (246)
Q Consensus 50 -----------------------------------------kg~aFV~f~~~~~A~~Ai~~lng~~~--~g~~l~v~~a 85 (246)
--||.|++.+.+.+......++|..+ .+..+.+.|.
T Consensus 217 k~~~dn~~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfv 295 (622)
T COG5638 217 KFGDDNVFSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSANVLDLRFV 295 (622)
T ss_pred ccCCccchhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccccceeeeeec
No 252
>PF14893 PNMA: PNMA
Probab=28.98 E-value=49 Score=28.11 Aligned_cols=76 Identities=14% Similarity=0.129 Sum_probs=43.9
Q ss_pred CCCcEEEecCCChhhhHHHHHHHhh----ccCCeeEE-EEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEE
Q psy4057 9 CVTNFVYVTHISSTDLKKSLYAIFS----QFGQIMDI-VALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83 (246)
Q Consensus 9 ~~~~~l~V~nl~~~~~e~~l~~~F~----~fG~i~~v-~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~ 83 (246)
-+.+.|.|.+||.++.+++|.+... +.|...-. ++.+......-|+|+|...-+-...=.+ +.-.|.+.+|-
T Consensus 16 ~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e~~n~~~iP~~---i~g~gg~W~Vv 92 (331)
T PF14893_consen 16 DPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAEDVNYSLIPRE---IPGKGGPWRVV 92 (331)
T ss_pred ChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeecccccchhhCchh---cCCCCCceEEE
Confidence 4568899999999999999887765 45543221 1112122345688888754332221111 22246677776
Q ss_pred EccC
Q psy4057 84 YSKT 87 (246)
Q Consensus 84 ~a~~ 87 (246)
+-..
T Consensus 93 ~~p~ 96 (331)
T PF14893_consen 93 FKPP 96 (331)
T ss_pred ecCC
Confidence 6433
No 253
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=28.42 E-value=1.7e+02 Score=21.56 Aligned_cols=55 Identities=11% Similarity=0.147 Sum_probs=33.3
Q ss_pred EEecCCChhhhHHHHHHHhhc-cC-CeeEEEEccCCCCccEEEEEEcCHHHHHHHHH
Q psy4057 14 VYVTHISSTDLKKSLYAIFSQ-FG-QIMDIVALKTLKMRGQAFVIFKEIASATNALR 68 (246)
Q Consensus 14 l~V~nl~~~~~e~~l~~~F~~-fG-~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~ 68 (246)
-|+..+....+..+|...++. || .|..|..+.......=|||.+....+|.....
T Consensus 84 ~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~KKA~V~L~~~~~aidva~ 140 (145)
T PTZ00191 84 TLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLKKAYIRLSPDVDALDVAN 140 (145)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCceEEEEEECCCCcHHHHHH
Confidence 445555566677777777765 45 35555444333333459999988887665433
No 254
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=27.83 E-value=1.3e+02 Score=17.38 Aligned_cols=42 Identities=24% Similarity=0.260 Sum_probs=29.2
Q ss_pred HHHHHHhhccC-CeeEEEEccCCCCccEEEEEEcCHHHHHHHH
Q psy4057 26 KSLYAIFSQFG-QIMDIVALKTLKMRGQAFVIFKEIASATNAL 67 (246)
Q Consensus 26 ~~l~~~F~~fG-~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai 67 (246)
..+...+.+.| .|..+.+......++..-+.+.+.+.|.+++
T Consensus 13 ~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 13 AEVTEILAEAGINIKAISIAETRGEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred HHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECCHHHHHHHh
Confidence 34557777776 5777766555446677888888888887765
No 255
>KOG4483|consensus
Probab=27.54 E-value=1.8e+02 Score=25.46 Aligned_cols=53 Identities=17% Similarity=0.278 Sum_probs=42.6
Q ss_pred cEEEecCCChhhhHHHHHHHhhccCC-eeEEEEccCCCCccEEEEEEcCHHHHHHHHH
Q psy4057 12 NFVYVTHISSTDLKKSLYAIFSQFGQ-IMDIVALKTLKMRGQAFVIFKEIASATNALR 68 (246)
Q Consensus 12 ~~l~V~nl~~~~~e~~l~~~F~~fG~-i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~ 68 (246)
+.|=|-+.|....-+||...|+.||. =-+|+.+. .-.||-.|.+...|..|+.
T Consensus 392 HVlEIydfp~efkteDll~~f~~yq~kgfdIkWvD----dthalaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 392 HVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVD----DTHALAVFSSVNRAAEALT 445 (528)
T ss_pred ceeEeccCchhhccHHHHHHHHHhhcCCceeEEee----cceeEEeecchHHHHHHhh
Confidence 46677899999999999999999973 23444433 3679999999999999988
No 256
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=27.40 E-value=91 Score=19.42 Aligned_cols=35 Identities=11% Similarity=0.189 Sum_probs=26.9
Q ss_pred hhhhHHHHHHHhhccCCeeEEEEccCC-CCccEEEE
Q psy4057 21 STDLKKSLYAIFSQFGQIMDIVALKTL-KMRGQAFV 55 (246)
Q Consensus 21 ~~~~e~~l~~~F~~fG~i~~v~~~~~~-~~kg~aFV 55 (246)
++.-+.+|...|-+-..|.++.+...+ -.+|-|||
T Consensus 28 F~~~e~eler~fl~~P~v~e~~l~EKKri~~G~gyV 63 (64)
T PF13046_consen 28 FRLVEVELERHFLPLPEVKEVALYEKKRIRKGAGYV 63 (64)
T ss_pred HHHHHHHhhhhccCCCCceEEEEEEEEeeeCCceeE
Confidence 456677888999888899999887655 45677776
No 257
>KOG4357|consensus
Probab=27.15 E-value=2.4e+02 Score=20.20 Aligned_cols=61 Identities=23% Similarity=0.319 Sum_probs=38.3
Q ss_pred CcEEEEcCC-CCCCCHHHHH------------HHHccCCCceEEEEeeCCccEEEEEeCCHHHHHHHHHHhCCCccC
Q psy4057 171 NQILFLTNL-PEETSEMMLS------------MLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKIT 234 (246)
Q Consensus 171 ~~~l~v~nL-~~~~t~e~l~------------~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~ 234 (246)
.-.|||+=. |...++.+++ ++|..+=.+.+. ++.+. -|+..|.+-+.|-.|..-|-|..+.
T Consensus 66 tlmlfv~v~~psqp~~kd~rpftee~tqiwq~qlfn~~~dlq~f-ii~dd--raifm~kdge~a~e~k~fll~qd~~ 139 (164)
T KOG4357|consen 66 TLMLFVGVSDPSQPDEKDIRPFTEEITQIWQGQLFNAHVDLQRF-IIDDD--RAIFMFKDGEQAFEAKDFLLGQDFC 139 (164)
T ss_pred eEEEEEEecCCCCCChhhccchhHHHHHHHHHHhhccccceEEE-EecCC--eEEEEEeChhHHHHHHHHhhccchh
Confidence 445666633 3355555443 345544343333 33333 3999999999999999999887765
No 258
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=26.75 E-value=2e+02 Score=19.20 Aligned_cols=49 Identities=16% Similarity=0.192 Sum_probs=29.3
Q ss_pred CCcEEEecCCChhhhHHHHHHHhhcc--CCeeEEEEccCCCCccEEEEEEcC
Q psy4057 10 VTNFVYVTHISSTDLKKSLYAIFSQF--GQIMDIVALKTLKMRGQAFVIFKE 59 (246)
Q Consensus 10 ~~~~l~V~nl~~~~~e~~l~~~F~~f--G~i~~v~~~~~~~~kg~aFV~f~~ 59 (246)
+..-|||++++..+.+ .|.+...+. ++=.-+.+..+....||+|-++..
T Consensus 24 v~~GVyVg~~s~rVRe-~lW~~v~~~~~~~G~avm~~~~~~e~G~~~~t~G~ 74 (87)
T TIGR01873 24 PRAGVYVGGVSASVRE-RIWDYLAQHCPPKGSLVITWSSNTCPGFEFFTLGE 74 (87)
T ss_pred cCCCcEEcCCCHHHHH-HHHHHHHHhCCCCccEEEEEeCCCCCCcEEEecCC
Confidence 3456999999887765 444444443 322223334555667888887764
No 259
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=26.65 E-value=51 Score=23.22 Aligned_cols=56 Identities=14% Similarity=0.010 Sum_probs=36.3
Q ss_pred ccCCCCCcEEEecC---------CChhhhHHHHHHHhhcc---CCeeEEEEccCC---CCccEEEEEEcCH
Q psy4057 5 LAHICVTNFVYVTH---------ISSTDLKKSLYAIFSQF---GQIMDIVALKTL---KMRGQAFVIFKEI 60 (246)
Q Consensus 5 ~~~~~~~~~l~V~n---------l~~~~~e~~l~~~F~~f---G~i~~v~~~~~~---~~kg~aFV~f~~~ 60 (246)
+...+.-..|++.+ -|+.++-.+|+++|+.- --|..=.+.+++ .+-+.||..|...
T Consensus 59 IGs~q~~~sV~i~gTPsgnnv~F~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~ 129 (145)
T TIGR02542 59 IGSGQTPASVRIQGTPSGNNVIFPPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNAT 129 (145)
T ss_pred EccCCCcccEEEecCCCCCceecCceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccc
Confidence 34445555666622 36688999999999853 335554566777 3446788888755
No 260
>KOG2854|consensus
Probab=25.13 E-value=1.1e+02 Score=25.88 Aligned_cols=18 Identities=28% Similarity=0.180 Sum_probs=16.5
Q ss_pred cEEEEEEcCHHHHHHHHH
Q psy4057 51 GQAFVIFKEIASATNALR 68 (246)
Q Consensus 51 g~aFV~f~~~~~A~~Ai~ 68 (246)
+|+++.|.|+++|....+
T Consensus 213 ~y~DiifgNe~EA~af~~ 230 (343)
T KOG2854|consen 213 PYADIIFGNEDEAAAFAR 230 (343)
T ss_pred CcceEEEcCHHHHHHHHH
Confidence 789999999999998877
No 261
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=24.44 E-value=38 Score=21.25 Aligned_cols=57 Identities=16% Similarity=0.128 Sum_probs=33.5
Q ss_pred CCCCCcEEEecC-CChhhhH-HHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHh
Q psy4057 7 HICVTNFVYVTH-ISSTDLK-KSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSM 70 (246)
Q Consensus 7 ~~~~~~~l~V~n-l~~~~~e-~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~l 70 (246)
+.+.+-.||--. -...... +++++.|..++....+.- =.+|..|.+.++|-.++..+
T Consensus 6 EtaaGyaLF~v~~~~~~~~~~~~v~~~~~~~~~f~k~vk-------L~aF~pF~s~~~ALe~~~ai 64 (67)
T PF08156_consen 6 ETAAGYALFKVKDEKDEIGSDEEVQKSFSDPEKFSKIVK-------LKAFSPFKSAEEALENANAI 64 (67)
T ss_pred cCCCeeeeeEEechhhhhccHHHHHHHHcCHHHHhhhhh-------hhhccCCCCHHHHHHHHHHh
Confidence 445555666522 1111111 577788877654444322 23899999999998877654
No 262
>PF15063 TC1: Thyroid cancer protein 1
Probab=23.27 E-value=51 Score=21.26 Aligned_cols=29 Identities=17% Similarity=0.051 Sum_probs=23.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHccCCCc
Q psy4057 170 PNQILFLTNLPEETSEMMLSMLFNQFPGF 198 (246)
Q Consensus 170 ~~~~l~v~nL~~~~t~e~l~~~f~~~G~i 198 (246)
..+.-=+.|+-.+++.+.|..+|..-|.-
T Consensus 24 ~~RKkasaNIFe~vn~~qlqrLF~~sGD~ 52 (79)
T PF15063_consen 24 ASRKKASANIFENVNLDQLQRLFQKSGDK 52 (79)
T ss_pred HHhhhhhhhhhhccCHHHHHHHHHHccch
Confidence 34555577888999999999999998875
No 263
>PF02829 3H: 3H domain; InterPro: IPR004173 The 3H domain is named after its three highly conserved histidine residues. The 3H domain appears to be a small molecule-binding domain, based on its occurrence with other domains []. Several proteins carrying this domain are transcriptional regulators from the biotin repressor family. The transcription regulator TM1602 from Thermotoga maritima is a DNA-binding protein thought to belong to a family of de novo NAD synthesis pathway regulators. TM1602 has an N-terminal DNA-binding domain and a C-terminal 3H regulatory domain. The N-terminal domain appears to bind to the NAD promoter region and repress the de novo NAD biosynthesis operon, while the C-terminal 3H domain may bind to nicotinamide, nicotinic acid, or other substrate/products []. The 3H domain has a 2-layer alpha/beta sandwich fold.; GO: 0005488 binding; PDB: 1J5Y_A.
Probab=23.15 E-value=2.5e+02 Score=19.13 Aligned_cols=53 Identities=8% Similarity=0.162 Sum_probs=38.9
Q ss_pred ChhhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcC
Q psy4057 20 SSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQG 72 (246)
Q Consensus 20 ~~~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng 72 (246)
+.+.++++|.-+-..=|.|.+|.+.-..=..=.|.+...+..+++..++.++.
T Consensus 6 ~~~~~~~EL~~IVd~Gg~V~DV~veHp~YG~i~~~L~i~sr~Dv~~Fi~~l~~ 58 (98)
T PF02829_consen 6 TPDEIEDELEIIVDNGGRVLDVIVEHPVYGEITGNLNISSRRDVDKFIEKLEK 58 (98)
T ss_dssp -GGGHHHHHHHHHHTT-EEEEEEEEETTTEEEEEEEEE-SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEEeCCCCcEEEEEEecCCHHHHHHHHHHHhc
Confidence 56778889988888777899998755432234488899999999999998764
No 264
>COG3588 Fructose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=22.65 E-value=1.4e+02 Score=24.86 Aligned_cols=57 Identities=19% Similarity=0.276 Sum_probs=41.9
Q ss_pred CCCCCHHHHHHHHccCCCceE-EEEeeCCccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEeec
Q psy4057 180 PEETSEMMLSMLFNQFPGFKE-VRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAK 245 (246)
Q Consensus 180 ~~~~t~e~l~~~f~~~G~i~~-v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~ak 245 (246)
|..+-+..|+.+++....++. |.++.+. .+.++|..-|..+|+..-. ...|..+|+|
T Consensus 234 ~~~vae~tl~~~~~tvP~~vpgIvfLSGG--------~s~eeA~~~Lsa~n~~~~~-pw~L~fSf~R 291 (332)
T COG3588 234 PDEVAEDTLYSLLSTVPAVVPGIVFLSGG--------YSSEEANAHLSANNGERPL-PWSLIFSFSR 291 (332)
T ss_pred hHHHHHHHHHHHHhcCCcccceeEEecCC--------cchHHHHHHHHhhcCCCCC-CceeeeeHHH
Confidence 345667889999998888876 6666654 2478888889999996643 5777777765
No 265
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=22.18 E-value=40 Score=29.16 Aligned_cols=58 Identities=22% Similarity=0.269 Sum_probs=42.9
Q ss_pred CcEEEecCCChhhhHH--------HHHHHhhc--cCCeeEEEEccCC---CCccEEEEEEcCHHHHHHHHH
Q psy4057 11 TNFVYVTHISSTDLKK--------SLYAIFSQ--FGQIMDIVALKTL---KMRGQAFVIFKEIASATNALR 68 (246)
Q Consensus 11 ~~~l~V~nl~~~~~e~--------~l~~~F~~--fG~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~ 68 (246)
.+.+|+.+...+...+ ++...|.. .+.+..|...++. .++|.-|++|...+.|+++..
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 3556665554444444 88899998 6777777776655 567889999999999999963
No 266
>KOG2187|consensus
Probab=21.66 E-value=71 Score=28.83 Aligned_cols=56 Identities=16% Similarity=0.296 Sum_probs=37.9
Q ss_pred HHHHHHccCCCceEEEEeeCCccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEe
Q psy4057 187 MLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISF 243 (246)
Q Consensus 187 ~l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~ 243 (246)
..+.++...+...+..-.+...+++++.|.+.+.+.+|+..++|.... +..+++..
T Consensus 42 ~~k~~~~~~~~~~s~tk~~~~~~~~~~~~et~~~~~ka~~~v~g~~~k-~~~~~~~~ 97 (534)
T KOG2187|consen 42 LNKVLLKILRDVKSKTKLPKMPKYAYVTFETPSDAGKAINLVDGLLYK-GFILRVQL 97 (534)
T ss_pred HHhhhhhhcccccccCCCCCCCCceEEEEeccchhhhHHHHHhhhhhh-cchhhhhh
Confidence 334444444444443333344579999999999999999999998766 55555443
No 267
>KOG0156|consensus
Probab=20.70 E-value=2.2e+02 Score=25.67 Aligned_cols=59 Identities=15% Similarity=0.307 Sum_probs=43.8
Q ss_pred EecCCChhh---hHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeE
Q psy4057 15 YVTHISSTD---LKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPM 80 (246)
Q Consensus 15 ~V~nl~~~~---~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l 80 (246)
+||||+.-. ....|.++=++||+|..+++-.. -.|.-++.+.|+.|+. -++..+.||+.
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~~------~~Vviss~~~akE~l~-~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGSV------PVVVISSYEAAKEVLV-KQDLEFADRPD 97 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEecCc------eEEEECCHHHHHHHHH-hCCccccCCCC
Confidence 357765433 33567777779999998877321 5788889999999998 57899999886
No 268
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=20.15 E-value=2.3e+02 Score=22.20 Aligned_cols=52 Identities=15% Similarity=0.141 Sum_probs=35.3
Q ss_pred HHHHHHHhhccCC---eeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccC
Q psy4057 25 KKSLYAIFSQFGQ---IMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFY 76 (246)
Q Consensus 25 e~~l~~~F~~fG~---i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~ 76 (246)
.+++.+.....|. |.+..++-.+|.|+=+-..-.+.++|..+..+|=|..+.
T Consensus 27 ~eea~~~~~~l~~~~~VvKaQvl~GgRGK~GgVk~~~s~~ea~~~a~~mlg~~l~ 81 (202)
T PF08442_consen 27 PEEAREAAKELGGKPLVVKAQVLAGGRGKAGGVKIAKSPEEAKEAAKEMLGKTLK 81 (202)
T ss_dssp HHHHHHHHHHHTTSSEEEEE-SSSSTTTTTTCEEEESSHHHHHHHHHTTTTSEEE
T ss_pred HHHHHHHHHHhCCCcEEEEEeEeecCcccCCceeecCCHHHHHHHHHHHhCCceE
Confidence 3555566666653 666667666788873333445789999999989888876
Done!