Query psy4057
Match_columns 246
No_of_seqs 114 out of 1347
Neff 9.8
Searched_HMMs 29240
Date Sat Aug 17 00:15:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4057.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4057hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pgw_A U1-A; protein-RNA compl 100.0 8.7E-39 3E-43 262.7 23.8 239 7-246 5-282 (282)
2 4f02_A Polyadenylate-binding p 100.0 8.8E-38 3E-42 246.7 20.2 162 8-245 12-179 (213)
3 3md3_A Nuclear and cytoplasmic 100.0 3E-37 1E-41 233.7 20.0 159 12-246 1-166 (166)
4 1b7f_A Protein (SXL-lethal pro 100.0 1.5E-36 5.1E-41 230.5 20.7 157 10-244 2-168 (168)
5 1fxl_A Paraneoplastic encephal 100.0 2.9E-36 1E-40 228.5 20.3 157 10-244 1-167 (167)
6 2adc_A Polypyrimidine tract-bi 100.0 4.9E-36 1.7E-40 239.2 22.5 196 7-246 30-227 (229)
7 1qm9_A Polypyrimidine tract-bi 100.0 7.1E-36 2.4E-40 233.0 19.9 193 10-246 2-196 (198)
8 3tyt_A Heterogeneous nuclear r 100.0 1.4E-35 4.9E-40 232.2 20.9 193 9-244 2-204 (205)
9 3nmr_A Cugbp ELAV-like family 100.0 2.2E-35 7.6E-40 225.4 18.9 160 10-245 2-175 (175)
10 2qfj_A FBP-interacting repress 100.0 1.1E-35 3.8E-40 234.7 17.8 170 9-245 26-203 (216)
11 2g4b_A Splicing factor U2AF 65 100.0 1.2E-34 4.2E-39 220.9 18.6 154 9-244 2-171 (172)
12 1l3k_A Heterogeneous nuclear r 100.0 1.3E-34 4.5E-39 225.2 18.9 166 6-245 8-181 (196)
13 2cjk_A Nuclear polyadenylated 100.0 4E-35 1.4E-39 222.5 12.6 156 9-245 1-164 (167)
14 2yh0_A Splicing factor U2AF 65 100.0 1.2E-33 4.1E-38 220.1 20.7 175 9-245 2-192 (198)
15 1fje_B Nucleolin RBD12, protei 100.0 1.5E-34 5.2E-39 221.1 11.7 162 7-245 9-172 (175)
16 3smz_A Protein raver-1, ribonu 100.0 5.2E-33 1.8E-37 228.5 20.1 163 8-245 92-262 (284)
17 2ghp_A U4/U6 snRNA-associated 100.0 1.8E-32 6.3E-37 226.0 17.1 166 9-246 115-290 (292)
18 3smz_A Protein raver-1, ribonu 100.0 9.3E-32 3.2E-36 221.0 19.9 150 8-245 19-173 (284)
19 3sde_A Paraspeckle component 1 100.0 5.6E-32 1.9E-36 219.8 18.4 152 8-245 19-177 (261)
20 2ghp_A U4/U6 snRNA-associated 100.0 4.7E-32 1.6E-36 223.6 17.2 155 5-245 35-195 (292)
21 2i2y_A Fusion protein consists 99.9 9.4E-25 3.2E-29 162.6 12.8 135 48-245 11-146 (150)
22 2kn4_A Immunoglobulin G-bindin 99.9 2.9E-24 9.9E-29 161.4 13.5 140 41-245 3-148 (158)
23 4f25_A Polyadenylate-binding p 99.9 8.2E-25 2.8E-29 155.6 9.3 79 10-88 4-83 (115)
24 4fxv_A ELAV-like protein 1; RN 99.9 7.3E-22 2.5E-26 136.4 9.4 78 10-87 18-98 (99)
25 3r27_A HnRNP L, heterogeneous 99.9 1.3E-21 4.3E-26 134.1 9.9 81 164-246 14-96 (100)
26 4fxv_A ELAV-like protein 1; RN 99.9 1.5E-21 5.1E-26 134.9 10.3 76 169-245 17-97 (99)
27 3lqv_A PRE-mRNA branch site pr 99.9 4.6E-22 1.6E-26 141.4 7.5 81 7-87 4-84 (115)
28 3r27_A HnRNP L, heterogeneous 99.9 2.4E-21 8.1E-26 132.7 10.2 80 6-88 16-97 (100)
29 2a3j_A U1 small nuclear ribonu 99.9 2.9E-21 9.8E-26 139.1 9.7 91 7-97 25-119 (127)
30 3s8s_A Histone-lysine N-methyl 99.9 4.2E-21 1.4E-25 135.1 10.2 82 7-88 2-86 (110)
31 1sjq_A Polypyrimidine tract-bi 99.8 6.1E-21 2.1E-25 131.9 8.5 80 7-89 12-93 (105)
32 1wex_A Hypothetical protein (r 99.8 2.3E-20 7.8E-25 129.8 11.3 78 167-246 11-90 (104)
33 1x4d_A Matrin 3; structural ge 99.8 7.3E-21 2.5E-25 131.4 8.6 77 168-246 12-91 (102)
34 2cq1_A PTB-like protein L; RRM 99.8 2.5E-20 8.7E-25 128.8 11.2 79 166-246 10-90 (101)
35 3s8s_A Histone-lysine N-methyl 99.8 2.2E-20 7.5E-25 131.4 11.0 78 168-246 3-85 (110)
36 2lxi_A RNA-binding protein 10; 99.8 2.3E-21 8E-26 131.8 5.8 79 11-89 1-84 (91)
37 1sjq_A Polypyrimidine tract-bi 99.8 6E-21 2E-25 132.0 7.8 78 167-246 12-91 (105)
38 2wbr_A GW182, gawky, LD47780P; 99.8 1.4E-20 4.7E-25 124.5 8.8 75 8-85 4-78 (89)
39 2ad9_A Polypyrimidine tract-bi 99.8 2.2E-20 7.6E-25 132.3 10.3 80 165-246 25-106 (119)
40 1nu4_A U1A RNA binding domain; 99.8 8E-21 2.7E-25 130.7 7.7 87 5-91 2-92 (97)
41 2x1f_A MRNA 3'-END-processing 99.8 2.9E-20 1E-24 127.7 10.5 81 10-90 1-84 (96)
42 3bs9_A Nucleolysin TIA-1 isofo 99.8 2.3E-20 7.9E-25 125.8 9.5 82 7-88 2-86 (87)
43 1x4a_A Splicing factor, argini 99.8 5E-20 1.7E-24 129.5 11.1 83 7-89 18-100 (109)
44 3mdf_A Peptidyl-prolyl CIS-tra 99.8 3.2E-20 1.1E-24 124.5 9.6 80 7-86 3-85 (85)
45 3mdf_A Peptidyl-prolyl CIS-tra 99.8 4.1E-20 1.4E-24 124.0 10.0 77 168-245 4-85 (85)
46 2cq1_A PTB-like protein L; RRM 99.8 4.3E-20 1.5E-24 127.6 10.1 81 6-89 10-92 (101)
47 2dnz_A Probable RNA-binding pr 99.8 6.8E-20 2.3E-24 125.6 11.1 83 8-90 2-87 (95)
48 2ad9_A Polypyrimidine tract-bi 99.8 3E-20 1E-24 131.6 9.4 80 7-89 27-108 (119)
49 1x4d_A Matrin 3; structural ge 99.8 2.7E-20 9.2E-25 128.6 8.8 80 7-89 11-93 (102)
50 2cqi_A Nucleolysin TIAR; RNA r 99.8 7.9E-20 2.7E-24 127.2 11.2 85 5-89 9-94 (103)
51 1wex_A Hypothetical protein (r 99.8 3.7E-20 1.3E-24 128.7 9.4 81 6-89 10-92 (104)
52 2lkz_A RNA-binding protein 5; 99.8 2.6E-20 8.8E-25 127.3 8.4 81 7-87 5-94 (95)
53 2wbr_A GW182, gawky, LD47780P; 99.8 3.2E-20 1.1E-24 122.8 8.4 74 170-245 6-79 (89)
54 2lkz_A RNA-binding protein 5; 99.8 1.6E-20 5.5E-25 128.3 7.2 76 169-245 7-93 (95)
55 2e5h_A Zinc finger CCHC-type a 99.8 7.9E-20 2.7E-24 125.0 10.7 78 167-245 12-94 (94)
56 2dgx_A KIAA0430 protein; RRM d 99.8 6.3E-20 2.1E-24 126.0 10.1 83 7-89 5-91 (96)
57 4f25_A Polyadenylate-binding p 99.8 5.1E-20 1.8E-24 130.7 9.9 75 170-245 4-81 (115)
58 2fy1_A RNA-binding motif prote 99.8 8.8E-20 3E-24 129.6 11.1 85 5-89 1-87 (116)
59 2cqc_A Arginine/serine-rich sp 99.8 1.1E-19 3.8E-24 124.5 10.8 80 166-246 10-94 (95)
60 2e5h_A Zinc finger CCHC-type a 99.8 6.8E-20 2.3E-24 125.3 9.7 80 7-86 12-94 (94)
61 2la6_A RNA-binding protein FUS 99.8 2.3E-19 7.9E-24 123.9 12.4 78 167-245 9-99 (99)
62 2jrs_A RNA-binding protein 39; 99.8 5E-20 1.7E-24 129.2 9.1 86 4-89 19-107 (108)
63 2hvz_A Splicing factor, argini 99.8 3.2E-20 1.1E-24 128.7 7.8 76 12-89 1-76 (101)
64 2cpj_A Non-POU domain-containi 99.8 1.6E-19 5.3E-24 124.7 11.2 79 166-246 10-88 (99)
65 2cq3_A RNA-binding protein 9; 99.8 1.8E-19 6.3E-24 125.3 11.6 83 7-89 11-94 (103)
66 1whw_A Hypothetical protein ri 99.8 1.1E-19 3.9E-24 125.4 10.5 84 7-90 4-90 (99)
67 3md1_A Nuclear and cytoplasmic 99.8 9.8E-20 3.4E-24 121.6 9.8 78 11-88 1-81 (83)
68 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.2E-19 3.9E-24 122.3 10.2 77 169-246 4-85 (87)
69 2ytc_A PRE-mRNA-splicing facto 99.8 7.4E-20 2.5E-24 122.7 9.1 77 167-245 8-85 (85)
70 2do4_A Squamous cell carcinoma 99.8 1.1E-19 3.8E-24 125.7 10.2 84 6-89 12-97 (100)
71 3ns6_A Eukaryotic translation 99.8 7.1E-20 2.4E-24 126.7 9.2 79 9-87 4-92 (100)
72 2a3j_A U1 small nuclear ribonu 99.8 1.1E-19 3.7E-24 130.8 10.3 80 166-246 24-109 (127)
73 2cqc_A Arginine/serine-rich sp 99.8 7.1E-20 2.4E-24 125.4 8.9 82 6-87 10-94 (95)
74 1x5s_A Cold-inducible RNA-bind 99.8 1.1E-19 3.8E-24 126.2 10.0 83 7-89 8-93 (102)
75 1x4f_A Matrin 3; structural ge 99.8 3.7E-20 1.3E-24 129.7 7.5 78 167-246 21-101 (112)
76 2dnm_A SRP46 splicing factor; 99.8 1.2E-19 4E-24 126.3 10.1 84 6-89 8-94 (103)
77 2dgs_A DAZ-associated protein 99.8 1.9E-19 6.6E-24 124.3 11.1 83 6-89 5-90 (99)
78 1x5u_A Splicing factor 3B subu 99.8 1.5E-19 5.3E-24 126.1 10.6 84 6-89 10-96 (105)
79 2cqi_A Nucleolysin TIAR; RNA r 99.8 2.2E-19 7.4E-24 124.9 11.3 79 166-245 10-91 (103)
80 2dnh_A Bruno-like 5, RNA bindi 99.8 4.1E-19 1.4E-23 123.9 12.7 80 166-245 10-95 (105)
81 1x5t_A Splicing factor 3B subu 99.8 8.1E-20 2.8E-24 125.4 8.9 82 8-89 2-87 (96)
82 2do4_A Squamous cell carcinoma 99.8 3.6E-19 1.2E-23 123.1 12.2 79 166-245 12-94 (100)
83 2lxi_A RNA-binding protein 10; 99.8 1.5E-20 5E-25 127.8 5.0 74 171-245 1-81 (91)
84 2lea_A Serine/arginine-rich sp 99.8 1.8E-20 6.2E-25 136.7 5.8 78 168-246 44-126 (135)
85 2ywk_A Putative RNA-binding pr 99.8 1.1E-19 3.8E-24 124.5 9.4 80 7-86 12-93 (95)
86 2jrs_A RNA-binding protein 39; 99.8 3E-19 1E-23 125.2 11.6 80 166-246 21-105 (108)
87 1x5u_A Splicing factor 3B subu 99.8 3E-19 1E-23 124.6 11.5 79 166-245 10-93 (105)
88 1p27_B RNA-binding protein 8A; 99.8 1.3E-19 4.4E-24 126.8 9.4 82 7-88 19-103 (106)
89 3md1_A Nuclear and cytoplasmic 99.8 2.3E-19 8E-24 119.7 10.3 75 171-246 1-80 (83)
90 2cph_A RNA binding motif prote 99.8 3.4E-19 1.2E-23 124.7 11.7 80 166-246 10-96 (107)
91 2diu_A KIAA0430 protein; struc 99.8 1.5E-19 5E-24 120.7 9.2 80 7-93 4-89 (96)
92 2khc_A Testis-specific RNP-typ 99.8 2.3E-19 7.8E-24 127.9 10.9 79 166-245 35-118 (118)
93 2err_A Ataxin-2-binding protei 99.8 1.1E-19 3.9E-24 127.7 9.2 82 7-88 25-107 (109)
94 2la6_A RNA-binding protein FUS 99.8 1.3E-19 4.6E-24 125.1 9.4 82 5-86 7-99 (99)
95 2dgv_A HnRNP M, heterogeneous 99.8 1.7E-19 5.8E-24 122.8 9.7 83 7-89 4-87 (92)
96 2dnz_A Probable RNA-binding pr 99.8 3.7E-19 1.3E-23 121.9 11.4 77 169-246 3-84 (95)
97 1x4f_A Matrin 3; structural ge 99.8 4.8E-20 1.6E-24 129.1 7.0 81 7-90 21-104 (112)
98 2cph_A RNA binding motif prote 99.8 2.7E-19 9.3E-24 125.3 10.8 84 7-90 11-99 (107)
99 2x1f_A MRNA 3'-END-processing 99.8 2.1E-19 7.1E-24 123.4 10.0 76 170-246 1-81 (96)
100 2cpz_A CUG triplet repeat RNA- 99.8 2.9E-19 9.9E-24 126.8 11.0 81 165-246 19-104 (115)
101 1whx_A Hypothetical protein ri 99.8 1.1E-19 3.6E-24 128.2 8.6 75 170-246 9-83 (111)
102 1x5s_A Cold-inducible RNA-bind 99.8 3.2E-19 1.1E-23 123.8 10.9 79 167-246 8-91 (102)
103 2cq3_A RNA-binding protein 9; 99.8 5.6E-19 1.9E-23 122.8 12.2 79 166-245 10-91 (103)
104 2dnh_A Bruno-like 5, RNA bindi 99.8 2.3E-19 7.9E-24 125.2 10.2 83 7-89 11-98 (105)
105 2cqb_A Peptidyl-prolyl CIS-tra 99.8 1.3E-19 4.5E-24 125.8 8.8 83 7-89 8-93 (102)
106 2xnq_A Nuclear polyadenylated 99.8 2.7E-19 9.3E-24 123.0 10.3 77 166-246 17-94 (97)
107 1s79_A Lupus LA protein; RRM, 99.8 1.2E-19 4.2E-24 126.0 8.6 79 7-86 7-87 (103)
108 2jvo_A Nucleolar protein 3; nu 99.8 1.9E-19 6.4E-24 126.3 9.6 77 165-245 25-101 (108)
109 2dgs_A DAZ-associated protein 99.8 5.6E-19 1.9E-23 121.9 11.9 77 167-245 6-87 (99)
110 2dgx_A KIAA0430 protein; RRM d 99.8 1.9E-19 6.6E-24 123.6 9.5 78 168-246 6-89 (96)
111 2err_A Ataxin-2-binding protei 99.8 1.7E-19 5.8E-24 126.8 9.4 80 166-246 24-106 (109)
112 1why_A Hypothetical protein ri 99.8 2.5E-19 8.6E-24 123.2 10.1 81 6-89 12-94 (97)
113 2cpf_A RNA binding motif prote 99.8 1.3E-19 4.3E-24 124.9 8.5 82 8-89 2-89 (98)
114 1why_A Hypothetical protein ri 99.8 5.8E-19 2E-23 121.4 11.8 78 167-245 13-91 (97)
115 2cq0_A Eukaryotic translation 99.8 1.3E-19 4.5E-24 126.0 8.7 83 7-89 11-96 (103)
116 2dnq_A RNA-binding protein 4B; 99.8 4.3E-19 1.5E-23 120.3 11.0 76 167-246 4-79 (90)
117 2ywk_A Putative RNA-binding pr 99.8 2.4E-19 8.1E-24 122.8 9.8 78 167-245 12-93 (95)
118 1whw_A Hypothetical protein ri 99.8 3.5E-19 1.2E-23 122.9 10.7 79 167-246 4-87 (99)
119 2dgo_A Cytotoxic granule-assoc 99.8 4.2E-19 1.4E-23 126.0 11.3 83 7-89 11-96 (115)
120 2dgo_A Cytotoxic granule-assoc 99.8 4.7E-19 1.6E-23 125.7 11.6 80 166-246 10-94 (115)
121 1x4a_A Splicing factor, argini 99.8 6.4E-19 2.2E-23 123.8 12.0 79 166-245 17-97 (109)
122 2dnm_A SRP46 splicing factor; 99.8 3.9E-19 1.3E-23 123.6 10.7 78 167-245 9-91 (103)
123 2cpz_A CUG triplet repeat RNA- 99.8 1.6E-19 5.4E-24 128.2 8.8 83 7-89 21-106 (115)
124 3ulh_A THO complex subunit 4; 99.8 2.9E-19 9.9E-24 125.1 10.1 81 6-86 24-106 (107)
125 2cq0_A Eukaryotic translation 99.8 3.4E-19 1.2E-23 123.9 10.3 79 167-246 11-94 (103)
126 1oo0_B CG8781-PA, drosophila Y 99.8 2.8E-19 9.7E-24 125.8 10.0 82 7-88 22-106 (110)
127 4a8x_A RNA-binding protein wit 99.8 3.8E-19 1.3E-23 120.0 10.1 80 9-88 2-85 (88)
128 1x4h_A RNA-binding protein 28; 99.8 4.2E-19 1.4E-23 125.1 10.6 84 6-89 10-102 (111)
129 2d9p_A Polyadenylate-binding p 99.8 2.9E-19 9.8E-24 124.3 9.6 83 7-89 11-94 (103)
130 2d9p_A Polyadenylate-binding p 99.8 6.3E-19 2.1E-23 122.6 11.2 79 167-246 11-92 (103)
131 3zzy_A Polypyrimidine tract-bi 99.8 2.9E-19 1E-23 128.1 9.6 74 171-245 28-104 (130)
132 2dnq_A RNA-binding protein 4B; 99.8 5.6E-19 1.9E-23 119.8 10.2 78 7-89 4-81 (90)
133 2dgv_A HnRNP M, heterogeneous 99.8 6.4E-19 2.2E-23 119.9 10.5 78 168-246 5-85 (92)
134 2xnq_A Nuclear polyadenylated 99.8 6.8E-19 2.3E-23 121.0 10.6 78 6-88 17-95 (97)
135 2kxn_B Transformer-2 protein h 99.8 2E-19 6.8E-24 130.2 8.2 83 6-88 41-126 (129)
136 2cpi_A CCR4-NOT transcription 99.8 1.5E-19 5E-24 127.5 7.3 83 7-89 11-102 (111)
137 2div_A TRNA selenocysteine ass 99.8 2.6E-19 8.7E-24 123.6 8.4 82 7-88 5-94 (99)
138 2dgp_A Bruno-like 4, RNA bindi 99.8 4.9E-19 1.7E-23 123.7 9.9 83 7-89 9-97 (106)
139 1wi8_A EIF-4B, eukaryotic tran 99.8 4.2E-19 1.4E-23 123.7 9.5 81 7-89 11-95 (104)
140 2khc_A Testis-specific RNP-typ 99.8 2.6E-19 8.8E-24 127.7 8.5 80 7-86 36-118 (118)
141 2do0_A HnRNP M, heterogeneous 99.8 5.4E-19 1.9E-23 125.2 10.1 83 6-88 10-94 (114)
142 2cqb_A Peptidyl-prolyl CIS-tra 99.8 3.8E-19 1.3E-23 123.5 9.1 78 167-245 8-90 (102)
143 1p27_B RNA-binding protein 8A; 99.8 9.5E-19 3.3E-23 122.3 11.2 77 168-245 20-101 (106)
144 3p5t_L Cleavage and polyadenyl 99.8 6.2E-20 2.1E-24 124.5 5.0 78 12-89 2-84 (90)
145 2cpj_A Non-POU domain-containi 99.8 5.3E-19 1.8E-23 122.0 9.8 80 7-89 11-90 (99)
146 1x4g_A Nucleolysin TIAR; struc 99.8 4.1E-19 1.4E-23 124.8 9.4 78 167-246 21-98 (109)
147 2kvi_A Nuclear polyadenylated 99.8 2.9E-19 9.9E-24 122.7 8.3 80 5-89 4-84 (96)
148 2kvi_A Nuclear polyadenylated 99.8 5.8E-19 2E-23 121.2 9.8 75 167-245 6-81 (96)
149 3ns6_A Eukaryotic translation 99.8 2.2E-19 7.5E-24 124.2 7.7 76 169-245 4-91 (100)
150 2cpf_A RNA binding motif prote 99.8 4.1E-19 1.4E-23 122.4 9.0 77 169-246 3-87 (98)
151 2fy1_A RNA-binding motif prote 99.8 9.1E-19 3.1E-23 124.4 10.9 78 168-246 4-85 (116)
152 2jvr_A Nucleolar protein 3; RN 99.8 3.2E-19 1.1E-23 125.2 8.4 81 7-88 24-105 (111)
153 1x4g_A Nucleolysin TIAR; struc 99.8 7E-19 2.4E-23 123.6 10.1 81 7-90 21-101 (109)
154 4a8x_A RNA-binding protein wit 99.8 6.1E-19 2.1E-23 119.0 9.4 75 170-245 3-83 (88)
155 2div_A TRNA selenocysteine ass 99.8 5.6E-19 1.9E-23 121.9 9.4 78 167-245 5-92 (99)
156 2nlw_A Eukaryotic translation 99.8 4.3E-19 1.5E-23 123.8 8.9 78 11-88 15-100 (105)
157 2dgt_A RNA-binding protein 30; 99.8 1E-18 3.5E-23 118.9 10.5 75 167-245 6-80 (92)
158 2dgp_A Bruno-like 4, RNA bindi 99.8 1E-18 3.4E-23 122.2 10.7 78 167-245 9-94 (106)
159 2diu_A KIAA0430 protein; struc 99.8 7.8E-19 2.7E-23 117.2 9.5 74 167-246 4-83 (96)
160 2do0_A HnRNP M, heterogeneous 99.8 1.7E-18 5.8E-23 122.6 12.0 78 167-245 11-92 (114)
161 1x4c_A Splicing factor, argini 99.8 1.1E-18 3.9E-23 122.3 10.9 74 169-245 13-91 (108)
162 3ucg_A Polyadenylate-binding p 99.8 5.9E-19 2E-23 119.3 9.1 78 10-88 5-85 (89)
163 2ytc_A PRE-mRNA-splicing facto 99.8 6.3E-19 2.2E-23 118.1 9.1 78 6-86 7-85 (85)
164 3lqv_A PRE-mRNA branch site pr 99.8 1.1E-18 3.9E-23 123.7 10.9 77 168-245 5-83 (115)
165 1x5t_A Splicing factor 3B subu 99.8 3.7E-19 1.3E-23 122.1 8.1 77 169-246 3-85 (96)
166 2la4_A Nuclear and cytoplasmic 99.8 4.1E-19 1.4E-23 123.1 8.2 77 168-246 24-100 (101)
167 2cq2_A Hypothetical protein LO 99.8 3.9E-19 1.3E-23 124.6 8.1 78 167-246 21-105 (114)
168 2kxn_B Transformer-2 protein h 99.8 7.5E-19 2.6E-23 127.1 9.9 79 166-245 41-124 (129)
169 3ulh_A THO complex subunit 4; 99.8 1.4E-18 4.6E-23 121.7 10.9 78 167-245 25-106 (107)
170 1s79_A Lupus LA protein; RRM, 99.8 6.6E-19 2.3E-23 122.3 9.2 77 167-245 7-87 (103)
171 1oo0_B CG8781-PA, drosophila Y 99.8 8.7E-19 3E-23 123.3 10.0 78 167-245 22-104 (110)
172 1x4h_A RNA-binding protein 28; 99.8 1.6E-18 5.4E-23 122.1 11.3 78 167-245 11-99 (111)
173 2e5j_A Methenyltetrahydrofolat 99.8 1.6E-18 5.5E-23 119.1 11.0 78 167-246 15-93 (97)
174 2la4_A Nuclear and cytoplasmic 99.8 4E-19 1.4E-23 123.1 8.0 77 8-87 24-100 (101)
175 1rk8_A CG8781-PA, CG8781-PA pr 99.8 9.6E-19 3.3E-23 132.0 10.7 77 168-245 69-150 (165)
176 2cpe_A RNA-binding protein EWS 99.8 8.2E-19 2.8E-23 124.1 9.7 83 7-89 11-104 (113)
177 3ex7_B RNA-binding protein 8A; 99.8 8E-19 2.8E-23 126.5 9.5 84 6-89 17-103 (126)
178 2dhg_A TRNA selenocysteine ass 99.8 4.8E-19 1.7E-23 123.3 8.1 83 7-89 5-91 (104)
179 2krb_A Eukaryotic translation 99.8 2.7E-19 9.3E-24 118.9 6.5 72 11-82 1-80 (81)
180 1x4e_A RNA binding motif, sing 99.8 1.1E-19 3.9E-24 121.8 4.7 78 8-85 2-82 (85)
181 3s7r_A Heterogeneous nuclear r 99.8 9.7E-19 3.3E-23 117.8 9.2 78 7-85 7-87 (87)
182 2jvo_A Nucleolar protein 3; nu 99.8 9.4E-19 3.2E-23 122.7 9.4 79 6-89 26-104 (108)
183 2jvr_A Nucleolar protein 3; RN 99.8 5.3E-19 1.8E-23 124.1 8.1 77 168-245 25-103 (111)
184 2dnp_A RNA-binding protein 14; 99.8 1.4E-18 4.8E-23 117.8 10.0 78 7-89 5-82 (90)
185 2cpe_A RNA-binding protein EWS 99.8 1.4E-18 4.7E-23 122.9 10.3 79 167-246 11-102 (113)
186 2hvz_A Splicing factor, argini 99.8 5.3E-19 1.8E-23 122.5 8.0 73 172-245 1-73 (101)
187 2dng_A Eukaryotic translation 99.8 1.1E-18 3.6E-23 121.4 9.5 82 6-89 10-94 (103)
188 3p5t_L Cleavage and polyadenyl 99.8 3.3E-19 1.1E-23 120.9 6.6 73 172-245 2-81 (90)
189 2dnp_A RNA-binding protein 14; 99.8 1.1E-18 3.8E-23 118.3 9.2 76 167-246 5-80 (90)
190 1nu4_A U1A RNA binding domain; 99.8 5.8E-19 2E-23 121.3 7.9 79 167-246 4-88 (97)
191 2cpd_A Apobec-1 stimulating pr 99.8 2.5E-18 8.7E-23 118.6 11.1 77 166-246 10-88 (99)
192 2cq2_A Hypothetical protein LO 99.8 8.4E-19 2.9E-23 122.9 8.7 79 7-88 21-106 (114)
193 1whx_A Hypothetical protein ri 99.8 6.6E-19 2.2E-23 124.1 8.3 78 8-88 7-84 (111)
194 1p1t_A Cleavage stimulation fa 99.8 2.3E-19 7.9E-24 125.0 5.8 81 9-89 6-89 (104)
195 1x4c_A Splicing factor, argini 99.8 1.6E-18 5.6E-23 121.5 10.1 78 8-89 12-94 (108)
196 3tyt_A Heterogeneous nuclear r 99.8 9.9E-19 3.4E-23 136.5 10.0 76 169-245 2-78 (205)
197 1u6f_A Tcubp1, RNA-binding pro 99.8 2.7E-18 9.1E-23 125.9 11.7 80 166-246 37-121 (139)
198 2e5i_A Heterogeneous nuclear r 99.8 3.8E-18 1.3E-22 121.7 12.1 77 168-245 20-100 (124)
199 2ek1_A RNA-binding protein 12; 99.8 2.6E-19 9E-24 122.6 5.8 79 8-86 12-93 (95)
200 3ex7_B RNA-binding protein 8A; 99.8 1.6E-18 5.5E-23 124.9 10.3 78 167-245 18-100 (126)
201 2e5j_A Methenyltetrahydrofolat 99.8 9.9E-19 3.4E-23 120.2 8.7 80 7-88 15-94 (97)
202 2cqd_A RNA-binding region cont 99.8 1.7E-18 5.7E-23 123.1 10.1 81 7-88 13-96 (116)
203 2j76_E EIF-4B, EIF4B, eukaryot 99.8 3.7E-19 1.3E-23 123.1 6.4 80 7-88 15-98 (100)
204 2dgt_A RNA-binding protein 30; 99.8 2.2E-18 7.6E-23 117.3 10.3 78 7-89 6-83 (92)
205 2dgu_A Heterogeneous nuclear r 99.8 1.5E-18 5.2E-23 120.6 9.6 75 167-245 7-81 (103)
206 2cqp_A RNA-binding protein 12; 99.8 8.8E-19 3E-23 120.7 8.3 79 167-246 11-94 (98)
207 2dhg_A TRNA selenocysteine ass 99.8 1.1E-18 3.6E-23 121.6 8.8 78 167-245 5-88 (104)
208 1u6f_A Tcubp1, RNA-binding pro 99.8 1.1E-18 3.9E-23 127.9 9.3 82 8-89 39-123 (139)
209 2cq4_A RNA binding motif prote 99.8 1.1E-18 3.9E-23 123.5 8.9 75 169-245 23-102 (114)
210 2dh8_A DAZ-associated protein 99.8 7E-19 2.4E-23 122.8 7.6 83 6-89 11-96 (105)
211 2rs2_A Musashi-1, RNA-binding 99.8 1.3E-18 4.5E-23 122.2 9.0 84 5-89 19-105 (109)
212 2kt5_A RNA and export factor-b 99.8 1.8E-18 6.1E-23 124.4 9.9 83 7-89 31-115 (124)
213 2cpi_A CCR4-NOT transcription 99.8 9.5E-19 3.2E-23 123.3 8.2 77 168-245 12-99 (111)
214 2j76_E EIF-4B, EIF4B, eukaryot 99.8 4.9E-19 1.7E-23 122.5 6.5 77 167-246 15-97 (100)
215 2dgu_A Heterogeneous nuclear r 99.8 2.4E-18 8.3E-23 119.6 10.1 78 7-89 7-84 (103)
216 1p1t_A Cleavage stimulation fa 99.8 1.3E-18 4.3E-23 121.2 8.6 77 169-246 6-87 (104)
217 2cpx_A Hypothetical protein FL 99.8 1.4E-18 4.8E-23 123.2 8.9 83 6-89 20-106 (115)
218 3n9u_C Cleavage and polyadenyl 99.8 1.3E-18 4.3E-23 129.9 9.0 79 10-88 54-137 (156)
219 2cqp_A RNA-binding protein 12; 99.8 5E-19 1.7E-23 121.9 6.3 81 8-88 12-95 (98)
220 3ucg_A Polyadenylate-binding p 99.8 1.4E-18 4.7E-23 117.5 8.4 74 170-245 5-83 (89)
221 2dng_A Eukaryotic translation 99.8 3.3E-18 1.1E-22 118.9 10.6 76 167-245 11-91 (103)
222 2dis_A Unnamed protein product 99.8 1.9E-18 6.5E-23 121.4 9.4 83 7-89 4-93 (109)
223 1sjr_A Polypyrimidine tract-bi 99.8 2.4E-18 8.3E-23 127.8 10.4 75 171-245 46-122 (164)
224 2i2y_A Fusion protein consists 99.8 1.6E-18 5.4E-23 128.8 9.5 80 7-88 69-148 (150)
225 2cqd_A RNA-binding region cont 99.8 2.8E-18 9.6E-23 121.9 10.3 78 166-245 12-94 (116)
226 2cpd_A Apobec-1 stimulating pr 99.8 4.1E-18 1.4E-22 117.5 10.8 78 7-89 11-90 (99)
227 2mss_A Protein (musashi1); RNA 99.8 5.9E-19 2E-23 115.5 6.1 72 13-85 1-75 (75)
228 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 2E-18 6.7E-23 126.7 9.4 79 7-85 59-140 (140)
229 2m2b_A RNA-binding protein 10; 99.8 6.1E-19 2.1E-23 128.0 6.6 80 8-88 20-108 (131)
230 2kt5_A RNA and export factor-b 99.8 1.4E-17 4.9E-22 119.6 13.6 78 167-245 31-112 (124)
231 1fjc_A Nucleolin RBD2, protein 99.8 6.8E-19 2.3E-23 120.8 6.4 82 6-89 11-92 (96)
232 3egn_A RNA-binding protein 40; 99.8 1.1E-18 3.8E-23 128.6 7.9 82 7-88 41-130 (143)
233 1wi8_A EIF-4B, eukaryotic tran 99.8 3.6E-18 1.2E-22 118.9 10.0 75 168-245 12-92 (104)
234 1h2v_Z 20 kDa nuclear CAP bind 99.8 3.3E-18 1.1E-22 127.9 10.5 82 8-89 36-120 (156)
235 2fc9_A NCL protein; structure 99.8 2E-18 7E-23 119.5 8.7 82 7-89 11-92 (101)
236 2e44_A Insulin-like growth fac 99.8 4.8E-18 1.6E-22 116.5 10.2 78 167-245 11-90 (96)
237 1x4e_A RNA binding motif, sing 99.8 5.3E-19 1.8E-23 118.6 5.1 76 169-245 3-83 (85)
238 3s7r_A Heterogeneous nuclear r 99.8 5.4E-18 1.9E-22 114.1 10.2 76 167-244 7-87 (87)
239 2cq4_A RNA binding motif prote 99.8 2.3E-18 7.9E-23 121.9 8.7 78 10-88 24-104 (114)
240 2fc8_A NCL protein; structure 99.8 2.5E-18 8.6E-23 119.3 8.6 84 7-90 11-94 (102)
241 2ek1_A RNA-binding protein 12; 99.8 1.1E-18 3.6E-23 119.6 6.5 78 167-245 11-93 (95)
242 2kn4_A Immunoglobulin G-bindin 99.8 3.3E-18 1.1E-22 128.2 9.7 81 8-88 67-150 (158)
243 3pgw_S U1-70K; protein-RNA com 99.8 4.6E-19 1.6E-23 153.0 5.7 77 168-245 99-180 (437)
244 3n9u_C Cleavage and polyadenyl 99.8 3.4E-18 1.2E-22 127.5 9.7 75 170-245 54-135 (156)
245 2ki2_A SS-DNA binding protein 99.8 4E-19 1.4E-23 120.5 4.2 77 12-89 2-81 (90)
246 1x5o_A RNA binding motif, sing 99.8 4E-18 1.4E-22 120.7 9.6 82 7-88 21-112 (114)
247 1wf1_A RNA-binding protein RAL 99.8 3E-18 1E-22 120.6 8.9 76 8-88 24-100 (110)
248 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 6.5E-18 2.2E-22 123.9 11.1 79 165-244 57-140 (140)
249 1wf1_A RNA-binding protein RAL 99.8 4.3E-18 1.5E-22 119.8 9.7 74 168-245 24-98 (110)
250 1x5o_A RNA binding motif, sing 99.8 1.1E-17 3.8E-22 118.4 11.8 79 167-245 21-110 (114)
251 2dgw_A Probable RNA-binding pr 99.8 9E-18 3.1E-22 114.0 10.8 77 167-246 6-86 (91)
252 2lea_A Serine/arginine-rich sp 99.8 1.5E-18 5.3E-23 126.5 7.4 83 7-89 43-128 (135)
253 2dgw_A Probable RNA-binding pr 99.8 4.1E-18 1.4E-22 115.7 8.9 80 7-88 6-87 (91)
254 2cpx_A Hypothetical protein FL 99.8 8.9E-18 3E-22 119.1 11.1 79 167-246 21-104 (115)
255 2cqh_A IGF-II mRNA-binding pro 99.8 1.9E-18 6.7E-23 117.8 7.2 79 7-89 4-84 (93)
256 2m2b_A RNA-binding protein 10; 99.7 1.6E-18 5.3E-23 125.9 7.0 77 167-245 19-106 (131)
257 2mss_A Protein (musashi1); RNA 99.7 2.4E-18 8.2E-23 112.5 7.3 70 173-244 1-75 (75)
258 1rk8_A CG8781-PA, CG8781-PA pr 99.7 4.1E-18 1.4E-22 128.6 9.6 83 7-89 68-153 (165)
259 2nlw_A Eukaryotic translation 99.7 5.6E-18 1.9E-22 118.2 9.6 77 168-245 12-98 (105)
260 1h2v_Z 20 kDa nuclear CAP bind 99.7 8.2E-18 2.8E-22 125.8 11.1 78 167-245 35-117 (156)
261 1x5p_A Negative elongation fac 99.7 1.3E-17 4.5E-22 114.6 11.2 76 167-246 11-86 (97)
262 1sjr_A Polypyrimidine tract-bi 99.7 6E-18 2.1E-22 125.7 10.0 81 8-89 41-125 (164)
263 1uaw_A Mouse-musashi-1; RNP-ty 99.7 1.3E-18 4.3E-23 114.4 5.5 73 12-85 1-76 (77)
264 2jwn_A Embryonic polyadenylate 99.7 2.3E-18 7.9E-23 123.8 7.2 78 10-88 35-115 (124)
265 1wg5_A Heterogeneous nuclear r 99.7 6E-18 2E-22 117.8 9.1 80 8-88 12-94 (104)
266 2dh8_A DAZ-associated protein 99.7 4E-18 1.4E-22 118.9 8.1 78 166-245 11-93 (105)
267 1x4b_A Heterogeneous nuclear r 99.7 3E-18 1E-22 121.7 7.6 80 10-90 26-108 (116)
268 2cqg_A TDP-43, TAR DNA-binding 99.7 8.4E-18 2.9E-22 116.8 9.7 82 7-90 11-95 (103)
269 2cqh_A IGF-II mRNA-binding pro 99.7 2.9E-18 1E-22 116.9 7.2 75 168-245 5-81 (93)
270 3zzy_A Polypyrimidine tract-bi 99.7 9.6E-18 3.3E-22 120.2 10.1 81 7-89 22-107 (130)
271 2fc9_A NCL protein; structure 99.7 8.6E-18 3E-22 116.3 9.5 75 167-245 11-89 (101)
272 2cpy_A RNA-binding protein 12; 99.7 3.2E-18 1.1E-22 121.2 7.3 80 8-88 12-94 (114)
273 2pe8_A Splicing factor 45; RRM 99.7 1.4E-17 4.7E-22 115.9 10.3 81 7-87 4-93 (105)
274 1wg1_A KIAA1579 protein, homol 99.7 4.5E-18 1.5E-22 114.8 7.6 77 9-89 3-79 (88)
275 1wez_A HnRNP H', FTP-3, hetero 99.7 3.6E-18 1.2E-22 118.4 7.2 81 7-89 11-93 (102)
276 1x5p_A Negative elongation fac 99.7 1.2E-17 4E-22 114.8 9.6 78 7-89 11-88 (97)
277 2e5i_A Heterogeneous nuclear r 99.7 1.8E-17 6.3E-22 118.2 10.8 80 8-90 20-104 (124)
278 2db1_A Heterogeneous nuclear r 99.7 3.7E-18 1.3E-22 121.6 7.0 79 8-87 14-97 (118)
279 1fj7_A Nucleolin RBD1, protein 99.7 1.4E-18 4.6E-23 120.4 4.6 80 8-89 14-96 (101)
280 2db1_A Heterogeneous nuclear r 99.7 7.5E-18 2.6E-22 120.0 8.6 77 167-245 13-96 (118)
281 2dis_A Unnamed protein product 99.7 9.5E-18 3.2E-22 117.8 8.9 77 168-245 5-90 (109)
282 2krb_A Eukaryotic translation 99.7 2.8E-18 9.7E-23 113.9 5.8 71 171-242 1-81 (81)
283 1wg1_A KIAA1579 protein, homol 99.7 7.7E-18 2.6E-22 113.6 7.9 74 170-246 4-77 (88)
284 1uaw_A Mouse-musashi-1; RNP-ty 99.7 5.1E-18 1.7E-22 111.5 6.7 71 172-244 1-76 (77)
285 2hgl_A HNRPF protein, heteroge 99.7 3.7E-18 1.3E-22 124.2 6.5 78 8-86 41-123 (136)
286 1wg5_A Heterogeneous nuclear r 99.7 2.5E-17 8.5E-22 114.6 10.5 78 167-246 11-93 (104)
287 2rs2_A Musashi-1, RNA-binding 99.7 8.7E-18 3E-22 118.0 8.1 78 166-245 20-102 (109)
288 3d2w_A TAR DNA-binding protein 99.7 1.7E-17 5.9E-22 112.1 9.0 77 7-89 7-85 (89)
289 1wel_A RNA-binding protein 12; 99.7 1E-17 3.5E-22 120.4 8.4 77 167-245 21-102 (124)
290 2jwn_A Embryonic polyadenylate 99.7 7E-18 2.4E-22 121.2 7.4 74 170-245 35-113 (124)
291 1iqt_A AUF1, heterogeneous nuc 99.7 3.5E-18 1.2E-22 111.7 5.2 72 13-85 1-75 (75)
292 2ki2_A SS-DNA binding protein 99.7 2.2E-18 7.6E-23 116.7 4.4 72 172-245 2-78 (90)
293 2cqg_A TDP-43, TAR DNA-binding 99.7 4.7E-17 1.6E-21 113.0 11.1 76 167-245 11-91 (103)
294 2e44_A Insulin-like growth fac 99.7 1.7E-17 5.8E-22 113.7 8.6 81 7-88 11-92 (96)
295 1fjc_A Nucleolin RBD2, protein 99.7 6.9E-18 2.4E-22 115.7 6.7 76 167-245 12-89 (96)
296 1x4b_A Heterogeneous nuclear r 99.7 1.2E-17 4.1E-22 118.6 8.0 74 170-245 26-104 (116)
297 2dnn_A RNA-binding protein 12; 99.7 1E-17 3.4E-22 117.3 7.3 75 11-87 16-92 (109)
298 2cpy_A RNA-binding protein 12; 99.7 1.5E-17 5.1E-22 117.7 8.2 76 168-245 12-92 (114)
299 2f3j_A RNA and export factor b 99.7 1.8E-17 6.2E-22 126.2 9.1 82 7-88 84-167 (177)
300 2hzc_A Splicing factor U2AF 65 99.7 2E-17 7E-22 111.2 8.2 73 8-84 3-86 (87)
301 2fc8_A NCL protein; structure 99.7 3E-17 1E-21 113.8 9.2 76 167-246 11-91 (102)
302 2lcw_A RNA-binding protein FUS 99.6 4.8E-19 1.6E-23 125.9 0.0 84 7-90 3-97 (116)
303 2hgl_A HNRPF protein, heteroge 99.7 2E-17 6.9E-22 120.3 8.5 77 167-245 40-123 (136)
304 2e5g_A U6 snRNA-specific termi 99.7 2.5E-17 8.5E-22 112.5 8.4 79 7-88 4-82 (94)
305 3beg_B Splicing factor, argini 99.7 2.1E-17 7.2E-22 117.1 8.3 72 170-244 15-91 (115)
306 1wez_A HnRNP H', FTP-3, hetero 99.7 5E-17 1.7E-21 112.6 10.0 76 167-245 11-90 (102)
307 3egn_A RNA-binding protein 40; 99.7 2.1E-17 7.3E-22 121.7 8.5 78 167-245 41-128 (143)
308 3q2s_C Cleavage and polyadenyl 99.7 1.4E-17 4.6E-22 132.1 7.8 79 10-88 67-150 (229)
309 2lmi_A GRSF-1, G-rich sequence 99.7 6.3E-18 2.2E-22 118.3 5.2 80 7-87 7-91 (107)
310 2bz2_A Negative elongation fac 99.7 4.8E-17 1.6E-21 116.2 9.8 75 168-246 36-110 (121)
311 1wel_A RNA-binding protein 12; 99.7 4.3E-18 1.5E-22 122.4 4.4 80 8-88 22-104 (124)
312 3u1l_A PRE-mRNA-splicing facto 99.7 4.1E-17 1.4E-21 129.0 10.4 80 8-90 131-231 (240)
313 1fj7_A Nucleolin RBD1, protein 99.7 8.4E-18 2.9E-22 116.4 5.6 75 168-245 14-93 (101)
314 3beg_B Splicing factor, argini 99.7 2.1E-17 7.2E-22 117.1 7.4 75 9-87 14-93 (115)
315 3d2w_A TAR DNA-binding protein 99.7 5E-17 1.7E-21 109.8 8.9 75 167-245 7-82 (89)
316 2xs2_A Deleted in azoospermia- 99.7 9.7E-18 3.3E-22 116.3 5.5 81 7-89 5-87 (102)
317 2bz2_A Negative elongation fac 99.7 4.1E-17 1.4E-21 116.6 8.9 78 7-89 35-112 (121)
318 2dnn_A RNA-binding protein 12; 99.7 4.3E-17 1.5E-21 114.1 8.7 73 170-245 15-91 (109)
319 2lmi_A GRSF-1, G-rich sequence 99.7 2.1E-17 7.4E-22 115.6 7.0 77 167-245 7-90 (107)
320 2pe8_A Splicing factor 45; RRM 99.7 9.2E-17 3.2E-21 111.6 10.0 76 169-245 6-92 (105)
321 3q2s_C Cleavage and polyadenyl 99.7 3.4E-17 1.2E-21 129.8 8.8 75 170-245 67-148 (229)
322 2f3j_A RNA and export factor b 99.7 8.4E-17 2.9E-21 122.5 10.6 78 167-245 84-165 (177)
323 4f02_A Polyadenylate-binding p 99.7 5.1E-17 1.7E-21 127.6 9.1 79 10-88 102-181 (213)
324 2hgn_A Heterogeneous nuclear r 99.7 1.1E-17 3.6E-22 122.1 4.8 80 8-89 43-124 (139)
325 3md3_A Nuclear and cytoplasmic 99.7 8.8E-17 3E-21 120.8 10.0 80 7-86 83-165 (166)
326 1iqt_A AUF1, heterogeneous nuc 99.7 1.9E-17 6.5E-22 108.1 5.2 70 173-244 1-75 (75)
327 2e5g_A U6 snRNA-specific termi 99.7 7.8E-17 2.7E-21 110.0 8.2 75 169-245 6-80 (94)
328 2dit_A HIV TAT specific factor 99.7 1.8E-16 6.1E-21 111.8 10.3 83 6-89 10-103 (112)
329 2lcw_A RNA-binding protein FUS 99.5 1.9E-18 6.4E-23 122.8 0.0 78 168-246 4-94 (116)
330 3u1l_A PRE-mRNA-splicing facto 99.7 6.1E-17 2.1E-21 128.0 8.6 78 167-246 130-228 (240)
331 2hgm_A HNRPF protein, heteroge 99.7 5.1E-17 1.7E-21 116.4 7.4 78 7-86 38-119 (126)
332 2adc_A Polypyrimidine tract-bi 99.7 1E-16 3.5E-21 127.3 9.6 78 167-245 30-108 (229)
333 2hzc_A Splicing factor U2AF 65 99.7 7.4E-17 2.5E-21 108.4 7.4 71 170-243 5-86 (87)
334 1wf0_A TDP-43, TAR DNA-binding 99.7 3E-17 1E-21 110.7 5.5 77 9-89 3-79 (88)
335 2dha_A FLJ20171 protein; RRM d 99.7 2.7E-17 9.1E-22 117.5 5.4 77 9-86 21-103 (123)
336 3v4m_A Splicing factor U2AF 65 99.7 1.9E-16 6.6E-21 110.1 9.5 80 8-87 2-96 (105)
337 2qfj_A FBP-interacting repress 99.7 2.2E-16 7.5E-21 123.8 10.1 81 9-89 123-206 (216)
338 1fxl_A Paraneoplastic encephal 99.7 3E-16 1E-20 118.0 10.3 75 170-245 1-80 (167)
339 2dnl_A Cytoplasmic polyadenyla 99.7 2.2E-16 7.5E-21 111.7 8.6 76 7-85 4-85 (114)
340 1wf0_A TDP-43, TAR DNA-binding 99.7 5E-17 1.7E-21 109.6 5.0 72 169-245 3-76 (88)
341 2g4b_A Splicing factor U2AF 65 99.7 2.3E-16 7.9E-21 119.3 9.1 77 9-85 92-171 (172)
342 1b7f_A Protein (SXL-lethal pro 99.7 2.7E-16 9.4E-21 118.4 9.4 75 170-245 2-81 (168)
343 2xs2_A Deleted in azoospermia- 99.7 8.4E-17 2.9E-21 111.5 6.1 75 168-245 6-84 (102)
344 3pgw_S U1-70K; protein-RNA com 99.7 2.6E-16 9E-21 135.8 10.1 81 9-89 100-183 (437)
345 1qm9_A Polypyrimidine tract-bi 99.7 1.9E-16 6.5E-21 122.8 8.3 75 170-245 2-77 (198)
346 2hgm_A HNRPF protein, heteroge 99.7 2E-16 6.9E-21 113.2 7.8 76 167-245 38-119 (126)
347 1fje_B Nucleolin RBD12, protei 99.7 2.1E-16 7.2E-21 120.0 8.1 79 8-88 96-174 (175)
348 3nmr_A Cugbp ELAV-like family 99.7 3.6E-16 1.2E-20 118.5 9.4 77 9-85 93-174 (175)
349 3ue2_A Poly(U)-binding-splicin 99.7 1.4E-16 4.7E-21 112.9 6.4 82 6-87 15-108 (118)
350 2cjk_A Nuclear polyadenylated 99.7 1.4E-16 4.9E-21 119.9 6.7 78 10-88 86-166 (167)
351 3v4m_A Splicing factor U2AF 65 99.7 4.3E-16 1.5E-20 108.3 8.5 77 168-245 2-95 (105)
352 2yh0_A Splicing factor U2AF 65 99.6 5E-16 1.7E-20 120.2 9.7 81 9-89 112-195 (198)
353 2hgn_A Heterogeneous nuclear r 99.6 8.6E-17 2.9E-21 117.3 4.7 74 169-245 44-121 (139)
354 3pgw_A U1-A; protein-RNA compl 99.6 9.2E-16 3.1E-20 125.4 11.1 79 167-246 5-89 (282)
355 2dit_A HIV TAT specific factor 99.6 1.3E-15 4.5E-20 107.3 10.3 77 167-245 11-100 (112)
356 2dha_A FLJ20171 protein; RRM d 99.6 2.9E-16 9.8E-21 112.2 6.7 75 169-245 21-103 (123)
357 1l3k_A Heterogeneous nuclear r 99.6 7.7E-16 2.6E-20 118.9 9.1 81 9-90 102-185 (196)
358 2voo_A Lupus LA protein; RNA-b 99.6 5.3E-16 1.8E-20 119.8 8.1 76 11-87 109-186 (193)
359 2j8a_A Histone-lysine N-methyl 99.6 3E-16 1E-20 110.6 5.9 75 12-86 3-94 (136)
360 2voo_A Lupus LA protein; RNA-b 99.6 4.4E-15 1.5E-19 114.6 12.3 74 170-245 108-185 (193)
361 3sde_A Paraspeckle component 1 99.6 2.5E-15 8.5E-20 121.6 10.6 77 167-245 18-94 (261)
362 3ue2_A Poly(U)-binding-splicin 99.6 2E-15 7E-20 106.9 8.1 76 169-245 18-107 (118)
363 2j8a_A Histone-lysine N-methyl 99.6 2.6E-15 8.9E-20 105.9 6.8 73 172-245 3-94 (136)
364 3s6e_A RNA-binding protein 39; 99.6 9.9E-15 3.4E-19 102.6 9.8 80 7-87 3-92 (114)
365 1jmt_A Splicing factor U2AF 35 99.6 2.6E-15 8.7E-20 104.2 6.6 70 16-85 20-103 (104)
366 2dnl_A Cytoplasmic polyadenyla 99.6 4.8E-15 1.7E-19 104.7 7.9 63 168-231 5-78 (114)
367 3s6e_A RNA-binding protein 39; 99.6 1.1E-14 3.7E-19 102.4 9.6 76 169-245 5-91 (114)
368 3tht_A Alkylated DNA repair pr 99.6 8.8E-15 3E-19 121.6 9.5 78 6-86 13-97 (345)
369 3tht_A Alkylated DNA repair pr 99.6 7.8E-15 2.7E-19 121.9 8.8 79 167-246 14-98 (345)
370 2d9o_A DNAJ (HSP40) homolog, s 99.6 3.7E-14 1.3E-18 97.3 10.6 75 169-246 8-89 (100)
371 1jmt_A Splicing factor U2AF 35 99.5 4E-15 1.4E-19 103.2 3.6 68 176-244 20-103 (104)
372 2d9o_A DNAJ (HSP40) homolog, s 99.5 4.8E-14 1.6E-18 96.7 7.8 75 11-89 10-91 (100)
373 2dnr_A Synaptojanin-1; RRM dom 99.4 3.3E-13 1.1E-17 89.2 7.6 74 167-245 3-84 (91)
374 2dnr_A Synaptojanin-1; RRM dom 99.4 1.6E-12 5.4E-17 85.9 8.5 76 7-88 3-86 (91)
375 1owx_A Lupus LA protein, SS-B, 99.4 4.1E-12 1.4E-16 89.4 10.6 78 164-243 11-92 (121)
376 1ufw_A Synaptojanin 2; RNP dom 99.3 3.4E-12 1.2E-16 84.7 5.3 73 166-243 10-91 (95)
377 1owx_A Lupus LA protein, SS-B, 99.3 2.1E-11 7.2E-16 85.8 8.6 77 7-86 14-94 (121)
378 1ufw_A Synaptojanin 2; RNP dom 99.3 1.2E-11 4.2E-16 82.0 6.8 72 7-84 11-91 (95)
379 3dxb_A Thioredoxin N-terminall 99.1 7.7E-10 2.6E-14 87.0 9.6 74 170-244 123-210 (222)
380 3dxb_A Thioredoxin N-terminall 99.1 5.6E-10 1.9E-14 87.8 8.8 66 21-86 139-211 (222)
381 2l9w_A U4/U6 snRNA-associated- 98.9 6.5E-09 2.2E-13 70.3 8.7 71 170-242 20-95 (117)
382 2l9w_A U4/U6 snRNA-associated- 98.8 2E-08 6.9E-13 68.0 6.6 81 2-85 9-97 (117)
383 1wey_A Calcipressin 1; structu 98.5 3.2E-07 1.1E-11 61.9 6.0 73 171-245 5-82 (104)
384 2dhx_A Poly (ADP-ribose) polym 98.3 5.3E-06 1.8E-10 55.7 9.3 71 9-85 6-81 (104)
385 1wey_A Calcipressin 1; structu 98.3 2.3E-06 7.9E-11 57.7 7.1 72 12-86 6-82 (104)
386 1uw4_A UPF3X; nonsense mediate 98.0 4.2E-05 1.4E-09 50.6 8.5 63 172-234 2-71 (91)
387 1whv_A Poly(A)-specific ribonu 98.0 3.5E-05 1.2E-09 51.1 7.7 58 168-229 13-70 (100)
388 3ctr_A Poly(A)-specific ribonu 97.8 3.6E-05 1.2E-09 51.2 5.4 56 170-229 5-60 (101)
389 2dhx_A Poly (ADP-ribose) polym 97.7 0.0008 2.7E-08 45.1 10.1 69 169-242 6-79 (104)
390 1wwh_A Nucleoporin 35, nucleop 97.5 0.00055 1.9E-08 47.4 7.7 69 170-241 23-91 (119)
391 1whv_A Poly(A)-specific ribonu 97.4 0.00045 1.6E-08 45.8 6.6 55 11-71 16-70 (100)
392 1wwh_A Nucleoporin 35, nucleop 97.4 0.0011 3.7E-08 45.9 8.6 69 11-84 24-93 (119)
393 1uw4_A UPF3X; nonsense mediate 97.3 0.00093 3.2E-08 44.1 7.1 65 12-76 2-71 (91)
394 2l08_A Regulator of nonsense t 97.2 0.00037 1.3E-08 46.4 4.4 75 170-244 8-93 (97)
395 3ctr_A Poly(A)-specific ribonu 97.1 0.00068 2.3E-08 45.1 4.6 55 11-71 6-60 (101)
396 3pq1_A Poly(A) RNA polymerase; 96.8 0.00052 1.8E-08 59.0 3.0 57 9-68 51-107 (464)
397 3pq1_A Poly(A) RNA polymerase; 96.8 0.00078 2.7E-08 58.0 3.4 56 170-226 52-107 (464)
398 3p3d_A Nucleoporin 53; structu 96.5 0.0087 3E-07 42.0 6.8 73 11-85 7-96 (132)
399 3p3d_A Nucleoporin 53; structu 96.0 0.0054 1.9E-07 43.0 3.5 69 171-242 7-94 (132)
400 2l08_A Regulator of nonsense t 95.9 0.0093 3.2E-07 39.6 4.0 69 8-76 6-79 (97)
401 3d45_A Poly(A)-specific ribonu 93.5 0.28 9.6E-06 42.9 8.4 57 170-230 439-495 (507)
402 3d45_A Poly(A)-specific ribonu 92.1 0.38 1.3E-05 42.0 7.2 56 11-72 440-495 (507)
403 2g0c_A ATP-dependent RNA helic 89.3 0.8 2.7E-05 28.6 5.1 69 173-246 2-76 (76)
404 2g0c_A ATP-dependent RNA helic 72.1 3.2 0.00011 25.7 3.0 68 13-86 2-75 (76)
405 4eyt_A Telomerase associated p 62.3 28 0.00096 22.3 8.3 58 170-230 11-68 (129)
406 4e8u_A Putative uncharacterize 53.6 35 0.0012 24.9 5.8 55 171-226 12-81 (172)
407 4e8u_A Putative uncharacterize 35.2 39 0.0013 24.7 3.7 39 25-63 35-75 (172)
408 3j21_T 50S ribosomal protein L 31.7 1E+02 0.0034 19.6 4.9 56 14-69 25-82 (86)
409 4eyt_A Telomerase associated p 26.4 1.3E+02 0.0045 19.2 7.7 57 9-70 10-66 (129)
410 1xn9_A 30S ribosomal protein S 26.0 1.2E+02 0.0041 19.9 4.5 49 17-66 28-80 (101)
411 3ts2_A Protein LIN-28 homolog 25.3 14 0.00048 26.3 -0.2 28 26-58 2-29 (148)
412 1ywx_A 30S ribosomal protein S 24.9 1.4E+02 0.0047 19.7 4.6 48 17-65 28-79 (102)
413 2v94_A RPS24, 30S ribosomal pr 23.4 1.7E+02 0.0057 19.4 4.9 48 17-65 37-88 (107)
414 2e5p_A Protein PHF1, PHD finge 23.1 46 0.0016 20.0 1.8 12 49-60 36-47 (68)
415 3fut_A Dimethyladenosine trans 21.5 75 0.0026 24.9 3.4 32 171-203 110-141 (271)
416 3h7h_B Transcription elongatio 20.9 88 0.003 20.7 3.1 35 197-231 40-74 (106)
417 2m0o_A PHD finger protein 1; t 20.8 54 0.0018 20.3 1.8 12 49-60 53-64 (79)
418 1vq8_S 50S ribosomal protein L 20.4 1.4E+02 0.0047 18.9 3.8 52 15-66 25-78 (85)
No 1
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=100.00 E-value=8.7e-39 Score=262.68 Aligned_cols=239 Identities=60% Similarity=0.922 Sum_probs=167.0
Q ss_pred CCCCCcEEEecCCChhhhHHHHH----HHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEE
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLY----AIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRI 82 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~----~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v 82 (246)
..+++++|||+|||.++++++|+ ++|++||.|.+|.+.++++++|||||+|.+.++|.+|++.|||..+.|++|+|
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 84 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 84 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 57889999999999999999966 99999999999999998899999999999999999999999999999999999
Q ss_pred EEccCCccccccccCccccccccccC-CCCCCCChhHHhhhhhhhHHHH-----------HHHHHHHHHHHhcccccCCC
Q psy4057 83 QYSKTDSDVISKIKGTFMERPKKVRK-QPAPVEDPAEAKKSKKKAAKEQ-----------ARLMQAQQQQMQALSVQQPP 150 (246)
Q Consensus 83 ~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~ 150 (246)
.+++...+......+.+..+...... +..................... ...... ........+..+.
T Consensus 85 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~ 163 (282)
T 3pgw_A 85 QYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQA-PRIMHHMPGQPPY 163 (282)
T ss_pred EEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCccccc-ccccccCCCCCCC
Confidence 99977765555444544433332222 1111111100000000000000 000000 0000000000000
Q ss_pred CCCCC-CCCC----------------------CCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC
Q psy4057 151 VSQPA-PPAP----------------------MATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR 207 (246)
Q Consensus 151 ~~~~~-~~~~----------------------~~~~~~~~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~ 207 (246)
...+. .+.+ .........+++++|||+|||.++++++|+++|++||.|.+++++.++
T Consensus 164 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~ 243 (282)
T 3pgw_A 164 MPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR 243 (282)
T ss_pred CCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC
Confidence 00000 0000 000112345578999999999999999999999999999999999998
Q ss_pred ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEeecC
Q psy4057 208 HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246 (246)
Q Consensus 208 ~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~ak~ 246 (246)
+|||||+|.+.++|.+|+..|||+.|++|+.|+|+||||
T Consensus 244 ~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~akk 282 (282)
T 3pgw_A 244 HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282 (282)
T ss_pred CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEecC
Confidence 899999999999999999999999998789999999997
No 2
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=8.8e-38 Score=246.66 Aligned_cols=162 Identities=23% Similarity=0.341 Sum_probs=145.2
Q ss_pred CCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC---CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEE
Q psy4057 8 ICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL---KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQY 84 (246)
Q Consensus 8 ~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 84 (246)
..|+++|||+|||.++++++|+++|++||.|.+|.++++. +++|||||+|.+.++|.+|++.+|+..+.|+.|++.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 4578999999999999999999999999999999998764 7889999999999999999999999999999999999
Q ss_pred ccCCccccccccCccccccccccCCCCCCCChhHHhhhhhhhHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCCC
Q psy4057 85 SKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAG 164 (246)
Q Consensus 85 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (246)
+..... .
T Consensus 92 ~~~~~~--------------------------------------------------~----------------------- 98 (213)
T 4f02_A 92 SQRDPS--------------------------------------------------L----------------------- 98 (213)
T ss_dssp CCCCTH--------------------------------------------------H-----------------------
T ss_pred cccccc--------------------------------------------------c-----------------------
Confidence 754421 0
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC---ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEE
Q psy4057 165 VPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR---HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKI 241 (246)
Q Consensus 165 ~~~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~---~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v 241 (246)
......+|||+|||.++|+++|+++|+.||.|.+++++.+. +|||||+|.+.++|.+|++.|||+.|+ |++|+|
T Consensus 99 --~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~-g~~i~V 175 (213)
T 4f02_A 99 --RKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLN-DRKVFV 175 (213)
T ss_dssp --HHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEET-TEECEE
T ss_pred --cccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEEC-CEEEEE
Confidence 01135689999999999999999999999999999999865 689999999999999999999999999 999999
Q ss_pred Eeec
Q psy4057 242 SFAK 245 (246)
Q Consensus 242 ~~ak 245 (246)
.||+
T Consensus 176 ~~a~ 179 (213)
T 4f02_A 176 GRFK 179 (213)
T ss_dssp EECC
T ss_pred EEcC
Confidence 9986
No 3
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-37 Score=233.71 Aligned_cols=159 Identities=19% Similarity=0.313 Sum_probs=146.3
Q ss_pred cEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC--CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEccCCc
Q psy4057 12 NFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL--KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTDS 89 (246)
Q Consensus 12 ~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~--~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~~~~ 89 (246)
++|||+|||.++++++|+++|++||.|.+|.++++. +++|||||+|.+.++|.+|++.|||..+.|++|.|.++....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 689999999999999999999999999999998765 678999999999999999999999999999999999975442
Q ss_pred cccccccCccccccccccCCCCCCCChhHHhhhhhhhHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCCCCCC
Q psy4057 90 DVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQP 169 (246)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (246)
. ....
T Consensus 81 ~---------------------------------------------------------------------------~~~~ 85 (166)
T 3md3_A 81 Q---------------------------------------------------------------------------SSSD 85 (166)
T ss_dssp C---------------------------------------------------------------------------CCCT
T ss_pred C---------------------------------------------------------------------------CCCC
Confidence 1 1334
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEee
Q psy4057 170 PNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFA 244 (246)
Q Consensus 170 ~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~a 244 (246)
+.++|||+|||.++|+++|+++|++||.|.++.++.+. +|+|||+|.+.++|.+|+..|||..++ |++|+|+||
T Consensus 86 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~i~v~~a 164 (166)
T 3md3_A 86 DTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLN-GRPLRINWA 164 (166)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEET-TEECEEEES
T ss_pred CCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccC-CcEEEEEec
Confidence 68899999999999999999999999999999999874 579999999999999999999999999 999999999
Q ss_pred cC
Q psy4057 245 KK 246 (246)
Q Consensus 245 k~ 246 (246)
+|
T Consensus 165 ~~ 166 (166)
T 3md3_A 165 AK 166 (166)
T ss_dssp CC
T ss_pred CC
Confidence 86
No 4
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=1.5e-36 Score=230.54 Aligned_cols=157 Identities=20% Similarity=0.396 Sum_probs=145.1
Q ss_pred CCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC---CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEcc
Q psy4057 10 VTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL---KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSK 86 (246)
Q Consensus 10 ~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~ 86 (246)
|+++|||+|||.++++++|+++|++||.|.+|.++++. +++|||||+|.+.++|.+|++.|+|..+.|++|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 68999999999999999999999999999999998754 578999999999999999999999999999999999985
Q ss_pred CCccccccccCccccccccccCCCCCCCChhHHhhhhhhhHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCCC
Q psy4057 87 TDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVP 166 (246)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (246)
...
T Consensus 82 ~~~----------------------------------------------------------------------------- 84 (168)
T 1b7f_A 82 PGG----------------------------------------------------------------------------- 84 (168)
T ss_dssp CCS-----------------------------------------------------------------------------
T ss_pred CCc-----------------------------------------------------------------------------
Confidence 442
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCC--Cce
Q psy4057 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPT--HAM 239 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g--~~l 239 (246)
...+.++|+|+|||.++++++|+++|++||.|..++++.++ +|+|||+|.+.++|.+|++.|||..+. | ++|
T Consensus 85 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~~~l 163 (168)
T 1b7f_A 85 ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPE-GGSQPL 163 (168)
T ss_dssp STTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCT-TCSSCC
T ss_pred ccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEec-CCCeEE
Confidence 22357899999999999999999999999999999999876 589999999999999999999999997 6 999
Q ss_pred EEEee
Q psy4057 240 KISFA 244 (246)
Q Consensus 240 ~v~~a 244 (246)
+|+||
T Consensus 164 ~V~~A 168 (168)
T 1b7f_A 164 SVRLA 168 (168)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99997
No 5
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=2.9e-36 Score=228.49 Aligned_cols=157 Identities=18% Similarity=0.405 Sum_probs=143.6
Q ss_pred CCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC---CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEcc
Q psy4057 10 VTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL---KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSK 86 (246)
Q Consensus 10 ~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~ 86 (246)
|+++|||+|||.++++++|+++|++||.|.+|.++++. +++|||||+|.+.++|.+|++.|||..+.|++|.|.++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 57999999999999999999999999999999998754 678999999999999999999999999999999999985
Q ss_pred CCccccccccCccccccccccCCCCCCCChhHHhhhhhhhHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCCC
Q psy4057 87 TDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVP 166 (246)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (246)
...
T Consensus 81 ~~~----------------------------------------------------------------------------- 83 (167)
T 1fxl_A 81 PSS----------------------------------------------------------------------------- 83 (167)
T ss_dssp CCC-----------------------------------------------------------------------------
T ss_pred CCc-----------------------------------------------------------------------------
Confidence 442
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCC--ce
Q psy4057 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTH--AM 239 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~--~l 239 (246)
.....++|||+|||.++++++|+++|++||.|..++++.++ +|+|||+|.+.++|.+|++.|||..++ |+ +|
T Consensus 84 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~~~i 162 (167)
T 1fxl_A 84 ASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPS-GATEPI 162 (167)
T ss_dssp GGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCT-TCSSCC
T ss_pred ccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccC-CCccce
Confidence 12246789999999999999999999999999999999875 689999999999999999999999999 64 59
Q ss_pred EEEee
Q psy4057 240 KISFA 244 (246)
Q Consensus 240 ~v~~a 244 (246)
+|+||
T Consensus 163 ~v~~A 167 (167)
T 1fxl_A 163 TVKFA 167 (167)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99997
No 6
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=100.00 E-value=4.9e-36 Score=239.19 Aligned_cols=196 Identities=20% Similarity=0.308 Sum_probs=153.1
Q ss_pred CCCCCcEEEecCCCh-hhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEc
Q psy4057 7 HICVTNFVYVTHISS-TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYS 85 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~-~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a 85 (246)
..+++++|||+|||. ++++++|+++|++||.|.+|.++++. +|||||+|.+.++|.+|++.|||..+.|++|.|.++
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~--~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a 107 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK--KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 107 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT--SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECC
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC--CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 456789999999999 99999999999999999999998874 899999999999999999999999999999999998
Q ss_pred cCCccccccccCccccccccccCCCCCCCChhHHhhhhhhhHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCC
Q psy4057 86 KTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGV 165 (246)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (246)
........+.........+..... +. .....+......
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------~~---~~~~~~~~~~~~ 145 (229)
T 2adc_A 108 KHQNVQLPREGQEDQGLTKDYGNS---------------------------------------PL---HRFKKPGSKNFQ 145 (229)
T ss_dssp SCCCCCCCCSSSSTTTTEEECTTC---------------------------------------SS---CCCCSTTSGGGT
T ss_pred cCccccCccccccccccccccccC---------------------------------------cc---cccCCccccccc
Confidence 765432111110000000000000 00 000000000011
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHccCC-CceEEEEeeCCccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEee
Q psy4057 166 PEQPPNQILFLTNLPEETSEMMLSMLFNQFP-GFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFA 244 (246)
Q Consensus 166 ~~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G-~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~a 244 (246)
...+++++|||+|||.++++++|+++|++|| .|..++++++.+|+|||+|.+.++|.+|++.|||..+.+|+.|+|+||
T Consensus 146 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a 225 (229)
T 2adc_A 146 NIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFS 225 (229)
T ss_dssp TCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEEC
T ss_pred cCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEe
Confidence 2345789999999999999999999999999 999999988677999999999999999999999999976899999999
Q ss_pred cC
Q psy4057 245 KK 246 (246)
Q Consensus 245 k~ 246 (246)
+.
T Consensus 226 ~~ 227 (229)
T 2adc_A 226 KS 227 (229)
T ss_dssp SS
T ss_pred cC
Confidence 73
No 7
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=100.00 E-value=7.1e-36 Score=233.03 Aligned_cols=193 Identities=20% Similarity=0.327 Sum_probs=151.3
Q ss_pred CCcEEEecCCCh-hhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEccCC
Q psy4057 10 VTNFVYVTHISS-TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTD 88 (246)
Q Consensus 10 ~~~~l~V~nl~~-~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~~~ 88 (246)
.+++|||+|||. ++++++|+++|++||.|.+|.++++. +|||||+|.+.++|.+|++.|||..+.|++|.|.++...
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~--~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~ 79 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK--KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 79 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC--SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCC
Confidence 468999999999 99999999999999999999998874 899999999999999999999999999999999998765
Q ss_pred ccccccccCccccccccccCCCCCCCChhHHhhhhhhhHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCCCCC
Q psy4057 89 SDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQ 168 (246)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (246)
.....+...... . .. .... ..+. ..... +.........
T Consensus 80 ~~~~~~~~~~~~--------~-------~~-----------------------~~~~-~~~~-~r~~~--~~~~~~~~~~ 117 (198)
T 1qm9_A 80 NVQLPREGQEDQ--------G-------LT-----------------------KDYG-NSPL-HRFKK--PGSKNFQNIF 117 (198)
T ss_dssp SCCCSSSSSSSS--------S-------CE-----------------------EESS-CCCT-TSSSS--CCCCCCSCCC
T ss_pred CcCCCCcCCccc--------c-------cc-----------------------cccc-CCch-hhccC--ccccccccCC
Confidence 422111000000 0 00 0000 0000 00000 0001112235
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHccCC-CceEEEEeeCCccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEeecC
Q psy4057 169 PPNQILFLTNLPEETSEMMLSMLFNQFP-GFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246 (246)
Q Consensus 169 ~~~~~l~v~nL~~~~t~e~l~~~f~~~G-~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~ak~ 246 (246)
+++++|||+|||.++++++|+++|+.|| .|..++++++.+|+|||+|.+.++|.+|+..|||..+++|++|+|+||+.
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 196 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTTSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeecc
Confidence 6799999999999999999999999999 99999998877899999999999999999999999997689999999973
No 8
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=100.00 E-value=1.4e-35 Score=232.18 Aligned_cols=193 Identities=13% Similarity=0.168 Sum_probs=145.1
Q ss_pred CCCcEEEecCCC-hhhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEccC
Q psy4057 9 CVTNFVYVTHIS-STDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKT 87 (246)
Q Consensus 9 ~~~~~l~V~nl~-~~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~~ 87 (246)
+++++|||+||+ ..+++++|+++|++||.|.+|+++++ .+|||||+|.+.++|+.|++.|||..+.|++|+|.+++.
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~--~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~ 79 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS--KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQ 79 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT--STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC--CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccC
Confidence 578999999999 89999999999999999999999876 589999999999999999999999999999999999875
Q ss_pred CccccccccCccccccccccCCCCCCCChh-HHhhhhhhhHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCCC
Q psy4057 88 DSDVISKIKGTFMERPKKVRKQPAPVEDPA-EAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVP 166 (246)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (246)
..... ......... . ....+.... ..+...+ ... ....
T Consensus 80 ~~~~p--~~~~~~~~~--~--~~~~~~~~~~~~r~~~~---------------~~~--------------------~~~~ 118 (205)
T 3tyt_A 80 PAIMP--GQSYGLEDG--S--CSYKDFSESRNNRFSTP---------------EQA--------------------AKNR 118 (205)
T ss_dssp SCCCC--CSCCBCTTS--C--BSEEECTTCTTCSCSSH---------------HHH--------------------TTSC
T ss_pred CccCC--CcccccccC--C--ccccccCCCccccccCc---------------ccc--------------------cccc
Confidence 43210 000000000 0 000000000 0000000 000 0011
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHccCCCc--eEEEEeeCC---ccEEEEEeCCHHHHHHHHHHhCCCccCCC---Cc
Q psy4057 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGF--KEVRLVPNR---HDIAFVEFENEMQSAAAKLALHGFKITPT---HA 238 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i--~~v~~~~~~---~g~afV~f~~~~~A~~Al~~l~g~~i~~g---~~ 238 (246)
..+++++|||+|||.++|+++|+++|++||.| .++++..++ +|+|||+|.+.++|..|+..|||+.|.+. .+
T Consensus 119 ~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p 198 (205)
T 3tyt_A 119 IQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYP 198 (205)
T ss_dssp CCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSC
T ss_pred cCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcc
Confidence 34678999999999999999999999999999 899998863 58999999999999999999999999831 36
Q ss_pred eEEEee
Q psy4057 239 MKISFA 244 (246)
Q Consensus 239 l~v~~a 244 (246)
+.|.||
T Consensus 199 ~~vk~~ 204 (205)
T 3tyt_A 199 YTLKLC 204 (205)
T ss_dssp EECEEE
T ss_pred eEEEec
Confidence 777775
No 9
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=2.2e-35 Score=225.39 Aligned_cols=160 Identities=21% Similarity=0.386 Sum_probs=141.9
Q ss_pred CCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC-----CCccEEEEEEcCHHHHHHHHHHhcCCccC---CeeEE
Q psy4057 10 VTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL-----KMRGQAFVIFKEIASATNALRSMQGFPFY---DKPMR 81 (246)
Q Consensus 10 ~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~-----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~---g~~l~ 81 (246)
.+++|||+|||.++++++|+++|++||.|.+|.++++. +++|||||+|.+.++|.+|++.|||..+. ++++.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 57899999999999999999999999999999998765 57899999999999999999999998875 67788
Q ss_pred EEEccCCccccccccCccccccccccCCCCCCCChhHHhhhhhhhHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCC
Q psy4057 82 IQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMA 161 (246)
Q Consensus 82 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (246)
+.++.....
T Consensus 82 ~~~~~~~~~----------------------------------------------------------------------- 90 (175)
T 3nmr_A 82 MKPADSEKN----------------------------------------------------------------------- 90 (175)
T ss_dssp EEECGGGCC-----------------------------------------------------------------------
T ss_pred Ecccccccc-----------------------------------------------------------------------
Confidence 877643210
Q ss_pred CCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC----ccEEEEEeCCHHHHHHHHHHhCCCccCCC-
Q psy4057 162 TAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR----HDIAFVEFENEMQSAAAKLALHGFKITPT- 236 (246)
Q Consensus 162 ~~~~~~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g~~i~~g- 236 (246)
...+.++|||+|||.++|+++|+++|++||.|.+++++.++ +|||||+|.+.++|.+|++.|||..+.+|
T Consensus 91 -----~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~ 165 (175)
T 3nmr_A 91 -----NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGC 165 (175)
T ss_dssp -----SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTC
T ss_pred -----ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCC
Confidence 22357899999999999999999999999999999999974 57999999999999999999999988753
Q ss_pred -CceEEEeec
Q psy4057 237 -HAMKISFAK 245 (246)
Q Consensus 237 -~~l~v~~ak 245 (246)
++|+|+||.
T Consensus 166 ~~~l~V~~ad 175 (175)
T 3nmr_A 166 SSPMVVKFAD 175 (175)
T ss_dssp SSCCEEEECC
T ss_pred CCCeEEEecC
Confidence 999999983
No 10
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=1.1e-35 Score=234.71 Aligned_cols=170 Identities=19% Similarity=0.259 Sum_probs=145.7
Q ss_pred CCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC---CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEc
Q psy4057 9 CVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL---KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYS 85 (246)
Q Consensus 9 ~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a 85 (246)
.++++|||+|||.++++++|+++|+.||.|.+|.++++. +++|||||+|.+.++|.+|++.|||..+.|++|.|.++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 456899999999999999999999999999999998754 68999999999999999999999999999999999887
Q ss_pred cCCccccccccCccccccccccCCCCCCCChhHHhhhhhhhHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCC
Q psy4057 86 KTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGV 165 (246)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (246)
........ ..... ..
T Consensus 106 ~~~~~~~~-----------------------------------~~~~~------~~------------------------ 120 (216)
T 2qfj_A 106 SNIGQAQP-----------------------------------IIDQL------AE------------------------ 120 (216)
T ss_dssp SCCGGGHH-----------------------------------HHHHH------HH------------------------
T ss_pred CCccccch-----------------------------------hhhhh------hc------------------------
Confidence 54421000 00000 00
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceE
Q psy4057 166 PEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMK 240 (246)
Q Consensus 166 ~~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~ 240 (246)
.....++|||+|||.++|+++|+++|+.||.|.+++++.+. +|||||+|.+.++|.+|+..|||..|+ |+.|+
T Consensus 121 -~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~-g~~i~ 198 (216)
T 2qfj_A 121 -EARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLG-GQYLR 198 (216)
T ss_dssp -HHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCS-SSBCE
T ss_pred -ccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeC-CcEEE
Confidence 12257899999999999999999999999999999999874 589999999999999999999999999 99999
Q ss_pred EEeec
Q psy4057 241 ISFAK 245 (246)
Q Consensus 241 v~~ak 245 (246)
|.||+
T Consensus 199 V~~a~ 203 (216)
T 2qfj_A 199 VGKAV 203 (216)
T ss_dssp EEECS
T ss_pred EEEec
Confidence 99986
No 11
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=100.00 E-value=1.2e-34 Score=220.86 Aligned_cols=154 Identities=19% Similarity=0.346 Sum_probs=139.8
Q ss_pred CCCcEEEecCCChhhhHHHHHHHhhcc----C-------CeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccCC
Q psy4057 9 CVTNFVYVTHISSTDLKKSLYAIFSQF----G-------QIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYD 77 (246)
Q Consensus 9 ~~~~~l~V~nl~~~~~e~~l~~~F~~f----G-------~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g 77 (246)
.++++|||+|||.++++++|+++|++| | .|.++.+. +++|||||+|.+.++|.+|+ .+||..+.|
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~---~~~g~afV~f~~~~~A~~A~-~~~~~~~~g 77 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN---QDKNFAFLEFRSVDETTQAM-AFDGIIFQG 77 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE---TTTTEEEEEESSHHHHHHHG-GGTTCEETT
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec---CCCCEEEEEeCCHHHHHHHH-HhCCcEecC
Confidence 578999999999999999999999999 6 67777654 46899999999999999999 899999999
Q ss_pred eeEEEEEccCCccccccccCccccccccccCCCCCCCChhHHhhhhhhhHHHHHHHHHHHHHHHhcccccCCCCCCCCCC
Q psy4057 78 KPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPP 157 (246)
Q Consensus 78 ~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (246)
++|.|.++....
T Consensus 78 ~~i~v~~~~~~~-------------------------------------------------------------------- 89 (172)
T 2g4b_A 78 QSLKIRRPHDYQ-------------------------------------------------------------------- 89 (172)
T ss_dssp EECEEECCSSCC--------------------------------------------------------------------
T ss_pred ceeeecCCcccC--------------------------------------------------------------------
Confidence 999999864331
Q ss_pred CCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCc
Q psy4057 158 APMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFK 232 (246)
Q Consensus 158 ~~~~~~~~~~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~ 232 (246)
..+..++|||+|||.++|+++|+++|++||.|..++++.++ +|+|||+|.+.++|.+|++.|||..
T Consensus 90 ---------~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 160 (172)
T 2g4b_A 90 ---------PLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQ 160 (172)
T ss_dssp ---------CCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCE
T ss_pred ---------CCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCE
Confidence 12247899999999999999999999999999999999985 5899999999999999999999999
Q ss_pred cCCCCceEEEee
Q psy4057 233 ITPTHAMKISFA 244 (246)
Q Consensus 233 i~~g~~l~v~~a 244 (246)
++ |++|+|+||
T Consensus 161 ~~-g~~l~V~~A 171 (172)
T 2g4b_A 161 LG-DKKLLVQRA 171 (172)
T ss_dssp ET-TEECEEEEC
T ss_pred EC-CeEEEEEeC
Confidence 99 999999997
No 12
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=1.3e-34 Score=225.18 Aligned_cols=166 Identities=17% Similarity=0.282 Sum_probs=143.7
Q ss_pred cCCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC---CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEE
Q psy4057 6 AHICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL---KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRI 82 (246)
Q Consensus 6 ~~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v 82 (246)
....++++|||+|||.++++++|+++|++||.|.+|.++++. +++|||||+|.+.++|.+|++. ++..+.|+.|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v 86 (196)
T 1l3k_A 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEP 86 (196)
T ss_dssp CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeee
Confidence 355678999999999999999999999999999999998764 6789999999999999999985 999999999999
Q ss_pred EEccCCccccccccCccccccccccCCCCCCCChhHHhhhhhhhHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCC
Q psy4057 83 QYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMAT 162 (246)
Q Consensus 83 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (246)
.++.......
T Consensus 87 ~~~~~~~~~~---------------------------------------------------------------------- 96 (196)
T 1l3k_A 87 KRAVSREDSQ---------------------------------------------------------------------- 96 (196)
T ss_dssp EECCC---------------------------------------------------------------------------
T ss_pred ecccCccccc----------------------------------------------------------------------
Confidence 9975442100
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCC
Q psy4057 163 AGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTH 237 (246)
Q Consensus 163 ~~~~~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~ 237 (246)
......+.++|||+|||.++|+++|+++|+.||.|..++++.++ +|||||+|.+.++|.+|+.. +|..++ |+
T Consensus 97 -~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~-G~ 173 (196)
T 1l3k_A 97 -RPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVN-GH 173 (196)
T ss_dssp -------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEET-TE
T ss_pred -ccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEEC-CE
Confidence 00123357899999999999999999999999999999999874 58999999999999999986 899999 99
Q ss_pred ceEEEeec
Q psy4057 238 AMKISFAK 245 (246)
Q Consensus 238 ~l~v~~ak 245 (246)
.|.|.||.
T Consensus 174 ~i~v~~a~ 181 (196)
T 1l3k_A 174 NCEVRKAL 181 (196)
T ss_dssp ECEEEECC
T ss_pred EEEEEecC
Confidence 99999985
No 13
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=4e-35 Score=222.51 Aligned_cols=156 Identities=13% Similarity=0.246 Sum_probs=140.2
Q ss_pred CCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccC---CCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEc
Q psy4057 9 CVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKT---LKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYS 85 (246)
Q Consensus 9 ~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~---~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a 85 (246)
.++++|||+|||.++++++|+++|++||.|.+|.++++ ++++|||||+|.+.++|..|++. +..+.|+.|.|.++
T Consensus 1 k~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~ 78 (167)
T 2cjk_A 1 KESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRA 78 (167)
T ss_dssp CGGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccc
Confidence 36899999999999999999999999999999999876 47899999999999999999994 67899999999887
Q ss_pred cCCccccccccCccccccccccCCCCCCCChhHHhhhhhhhHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCC
Q psy4057 86 KTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGV 165 (246)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (246)
.....
T Consensus 79 ~~~~~--------------------------------------------------------------------------- 83 (167)
T 2cjk_A 79 IPRDE--------------------------------------------------------------------------- 83 (167)
T ss_dssp CCHHH---------------------------------------------------------------------------
T ss_pred cchhh---------------------------------------------------------------------------
Confidence 43310
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceE
Q psy4057 166 PEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMK 240 (246)
Q Consensus 166 ~~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~ 240 (246)
..+.++|||+|||.++|+++|+++|++||.|..++++.++ +|||||+|.+.++|.+|++ |||..++ |++|+
T Consensus 84 --~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~-g~~i~ 159 (167)
T 2cjk_A 84 --QDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFK-DRKIE 159 (167)
T ss_dssp --HHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSS-SSCEE
T ss_pred --ccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeC-CeEEE
Confidence 1136789999999999999999999999999999999864 5899999999999999998 9999999 99999
Q ss_pred EEeec
Q psy4057 241 ISFAK 245 (246)
Q Consensus 241 v~~ak 245 (246)
|.||+
T Consensus 160 V~~a~ 164 (167)
T 2cjk_A 160 IKRAE 164 (167)
T ss_dssp EEECC
T ss_pred EeecC
Confidence 99986
No 14
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=100.00 E-value=1.2e-33 Score=220.12 Aligned_cols=175 Identities=17% Similarity=0.296 Sum_probs=141.9
Q ss_pred CCCcEEEecCCChhhhHHHHHHHhhcc----C-------CeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccCC
Q psy4057 9 CVTNFVYVTHISSTDLKKSLYAIFSQF----G-------QIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYD 77 (246)
Q Consensus 9 ~~~~~l~V~nl~~~~~e~~l~~~F~~f----G-------~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g 77 (246)
..+++|||+|||.++++++|+++|++| | .|.++.+ ++++|||||+|.+.++|.+|+ .|||..+.|
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~---~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g 77 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI---NQDKNFAFLEFRSVDETTQAM-AFDGIIFQG 77 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE---ETTTTEEEEEESCSHHHHHHG-GGTTEEETT
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe---cCCCCEEEEEeCCHHHHHHHH-HhcCCEEcC
Confidence 457999999999999999999999999 5 5666554 457999999999999999999 799999999
Q ss_pred eeEEEEEccCCccccccccCccccccccccCCCCCCCChhHHhhhhhhhHHHHHHHHHHHHHHHhcccccCCCCCCCCCC
Q psy4057 78 KPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPP 157 (246)
Q Consensus 78 ~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (246)
++|+|.++........... .+. ..
T Consensus 78 ~~i~v~~~~~~~~~~~~~~---------------------------------------------------~~~---~~-- 101 (198)
T 2yh0_A 78 QSLKIRRPHDYQPLPGMSE---------------------------------------------------NPS---VY-- 101 (198)
T ss_dssp EEEEEECCCCCCCCCCSSS---------------------------------------------------CSS---CC--
T ss_pred ceEEEeCCCCCCCCCCCcC---------------------------------------------------CCc---CC--
Confidence 9999999765421100000 000 00
Q ss_pred CCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCc
Q psy4057 158 APMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFK 232 (246)
Q Consensus 158 ~~~~~~~~~~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~ 232 (246)
.+.........+.++|||+|||.++++++|+++|++||.|.++++..++ +|||||+|.+.++|..|++.|||..
T Consensus 102 -~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 180 (198)
T 2yh0_A 102 -VPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQ 180 (198)
T ss_dssp -CTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCE
T ss_pred -CCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCE
Confidence 0000111233578999999999999999999999999999999999875 6899999999999999999999999
Q ss_pred cCCCCceEEEeec
Q psy4057 233 ITPTHAMKISFAK 245 (246)
Q Consensus 233 i~~g~~l~v~~ak 245 (246)
++ |+.|+|+||+
T Consensus 181 ~~-g~~l~v~~a~ 192 (198)
T 2yh0_A 181 LG-DKKLLVQRAS 192 (198)
T ss_dssp ET-TEECEEEESC
T ss_pred EC-CEEEEEEECC
Confidence 99 9999999986
No 15
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=100.00 E-value=1.5e-34 Score=221.06 Aligned_cols=162 Identities=15% Similarity=0.240 Sum_probs=139.3
Q ss_pred CCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEc--cCCCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEE
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVAL--KTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQY 84 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~--~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 84 (246)
...++++|||+|||.++++++|+++|+.||.+..+.+. .+++++|||||+|.+.++|.+|++ |||..+.|++|.|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 87 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEec
Confidence 56778999999999999999999999999987663222 345889999999999999999995 999999999999999
Q ss_pred ccCCccccccccCccccccccccCCCCCCCChhHHhhhhhhhHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCCC
Q psy4057 85 SKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAG 164 (246)
Q Consensus 85 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (246)
+.....
T Consensus 88 ~~~~~~-------------------------------------------------------------------------- 93 (175)
T 1fje_B 88 PKGRDS-------------------------------------------------------------------------- 93 (175)
T ss_dssp CCCSSC--------------------------------------------------------------------------
T ss_pred CCCccc--------------------------------------------------------------------------
Confidence 864421
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCCccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEee
Q psy4057 165 VPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFA 244 (246)
Q Consensus 165 ~~~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~a 244 (246)
....+.++|||+|||.++|+++|+++|++||.|..+......+|||||+|.+.++|.+|+..|||..++ |+.|+|+||
T Consensus 94 -~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~i~v~~a 171 (175)
T 1fje_B 94 -KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEID-GRSVSLYYT 171 (175)
T ss_dssp -STTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEECSSSSCCSEEEEECSSHHHHHHHHHHHTEEEET-TEEEEEEEC
T ss_pred -cccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEecCCCCCceEEEEEECCHHHHHHHHHHhCCCEEC-CeEEEEEec
Confidence 122358899999999999999999999999999877111123689999999999999999999999999 999999998
Q ss_pred c
Q psy4057 245 K 245 (246)
Q Consensus 245 k 245 (246)
+
T Consensus 172 ~ 172 (175)
T 1fje_B 172 G 172 (175)
T ss_dssp S
T ss_pred C
Confidence 6
No 16
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=5.2e-33 Score=228.47 Aligned_cols=163 Identities=14% Similarity=0.237 Sum_probs=147.2
Q ss_pred CCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccC---CCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEE
Q psy4057 8 ICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKT---LKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQY 84 (246)
Q Consensus 8 ~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~---~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 84 (246)
.+++++|||+|||.++++++|+++|++||.|.++.++.+ ++++|||||+|.+.++|.+|++.|||..+.|++|.|.+
T Consensus 92 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~ 171 (284)
T 3smz_A 92 QPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHW 171 (284)
T ss_dssp CCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 567899999999999999999999999999999998865 36789999999999999999999999999999999999
Q ss_pred ccCCccccccccCccccccccccCCCCCCCChhHHhhhhhhhHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCCC
Q psy4057 85 SKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAG 164 (246)
Q Consensus 85 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (246)
+.....
T Consensus 172 a~~~~~-------------------------------------------------------------------------- 177 (284)
T 3smz_A 172 TDAGQL-------------------------------------------------------------------------- 177 (284)
T ss_dssp CCGGGC--------------------------------------------------------------------------
T ss_pred CCCCCC--------------------------------------------------------------------------
Confidence 854321
Q ss_pred CCCCCCCcEEEEcCCCCCC-CHHHHHHHHccCCCceEEEEeeCC----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCce
Q psy4057 165 VPEQPPNQILFLTNLPEET-SEMMLSMLFNQFPGFKEVRLVPNR----HDIAFVEFENEMQSAAAKLALHGFKITPTHAM 239 (246)
Q Consensus 165 ~~~~~~~~~l~v~nL~~~~-t~e~l~~~f~~~G~i~~v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l 239 (246)
.....+.++|||+|||.++ ++++|+++|+.||.|..++++.+. +|+|||+|.+.++|.+|+..|||..++ |++|
T Consensus 178 ~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~l 256 (284)
T 3smz_A 178 TPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLG-GSHL 256 (284)
T ss_dssp CTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEET-TEEC
T ss_pred CcccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC-CeEE
Confidence 0123468899999999995 999999999999999999999974 589999999999999999999999999 9999
Q ss_pred EEEeec
Q psy4057 240 KISFAK 245 (246)
Q Consensus 240 ~v~~ak 245 (246)
+|+||+
T Consensus 257 ~v~~a~ 262 (284)
T 3smz_A 257 RVSFCA 262 (284)
T ss_dssp EEEECC
T ss_pred EEEEec
Confidence 999986
No 17
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=1.8e-32 Score=226.05 Aligned_cols=166 Identities=14% Similarity=0.206 Sum_probs=143.2
Q ss_pred CCCcEEEecCCChhhhHHHHHHHhhccC-CeeEEEEccCC--CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEc
Q psy4057 9 CVTNFVYVTHISSTDLKKSLYAIFSQFG-QIMDIVALKTL--KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYS 85 (246)
Q Consensus 9 ~~~~~l~V~nl~~~~~e~~l~~~F~~fG-~i~~v~~~~~~--~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a 85 (246)
.++++|||+|||.++++++|+++|++|| .|..|.++++. +++|||||+|.+.++|.+|++.|||..+.|++|.|.++
T Consensus 115 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 115 LTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 4689999999999999999999999999 99999998765 68899999999999999999999999999999999998
Q ss_pred cCCccccccccCccccccccccCCCCCCCChhHHhhhhhhhHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCC
Q psy4057 86 KTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGV 165 (246)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (246)
.+...... ..
T Consensus 195 ~~~~~~~~----------------------------------------------------------------------~~ 204 (292)
T 2ghp_A 195 NPLEKSKR----------------------------------------------------------------------TD 204 (292)
T ss_dssp CCC-----------------------------------------------------------------------------
T ss_pred CCCccccc----------------------------------------------------------------------cc
Confidence 65421000 00
Q ss_pred CCCCCCcEEEEcCCCCC-CCHHHHHHHHccCCCceEEEEeeCC------ccEEEEEeCCHHHHHHHHHHhCCCccCCCCc
Q psy4057 166 PEQPPNQILFLTNLPEE-TSEMMLSMLFNQFPGFKEVRLVPNR------HDIAFVEFENEMQSAAAKLALHGFKITPTHA 238 (246)
Q Consensus 166 ~~~~~~~~l~v~nL~~~-~t~e~l~~~f~~~G~i~~v~~~~~~------~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~ 238 (246)
....+.++|||+|||.+ +|+++|+++|+.||.|..++++.+. +|||||+|.+.++|.+|+ .|||+.|+ |++
T Consensus 205 ~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~-g~~ 282 (292)
T 2ghp_A 205 SATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLG-NRE 282 (292)
T ss_dssp --CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEET-TEE
T ss_pred ccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEEC-CcE
Confidence 13446899999999999 9999999999999999999998864 489999999999999999 99999999 999
Q ss_pred eEEEeecC
Q psy4057 239 MKISFAKK 246 (246)
Q Consensus 239 l~v~~ak~ 246 (246)
|+|+||+.
T Consensus 283 i~V~~a~~ 290 (292)
T 2ghp_A 283 ISVSLADK 290 (292)
T ss_dssp EEEEECCC
T ss_pred EEEEEecC
Confidence 99999974
No 18
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=9.3e-32 Score=220.99 Aligned_cols=150 Identities=16% Similarity=0.276 Sum_probs=140.1
Q ss_pred CCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEccC
Q psy4057 8 ICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKT 87 (246)
Q Consensus 8 ~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~~ 87 (246)
..++++|||+|||.++++++|+++|+.|| |.++.+ ++++|||||+|.+.++|.+|++.|||..+.|++|.|.++.
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~- 93 (284)
T 3smz_A 19 FRNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV---DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP- 93 (284)
T ss_dssp HHCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE---ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC-
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE---ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC-
Confidence 45789999999999999999999999999 999887 5689999999999999999999999999999999999841
Q ss_pred CccccccccCccccccccccCCCCCCCChhHHhhhhhhhHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCCCC
Q psy4057 88 DSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPE 167 (246)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (246)
T Consensus 94 -------------------------------------------------------------------------------- 93 (284)
T 3smz_A 94 -------------------------------------------------------------------------------- 93 (284)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEE
Q psy4057 168 QPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKIS 242 (246)
Q Consensus 168 ~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~ 242 (246)
+.++|||+|||.++|+++|+++|+.||.|..++++.++ +|||||+|.+.++|..|+..|||..++ |++|.|.
T Consensus 94 --~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~-g~~i~v~ 170 (284)
T 3smz_A 94 --TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLG-PRTLYVH 170 (284)
T ss_dssp --CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET-TEECEEE
T ss_pred --CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeC-CcEEEEE
Confidence 35789999999999999999999999999999999865 579999999999999999999999999 9999999
Q ss_pred eec
Q psy4057 243 FAK 245 (246)
Q Consensus 243 ~ak 245 (246)
|++
T Consensus 171 ~a~ 173 (284)
T 3smz_A 171 WTD 173 (284)
T ss_dssp ECC
T ss_pred ECC
Confidence 985
No 19
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=100.00 E-value=5.6e-32 Score=219.76 Aligned_cols=152 Identities=17% Similarity=0.266 Sum_probs=137.5
Q ss_pred CCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEccC
Q psy4057 8 ICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKT 87 (246)
Q Consensus 8 ~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~~ 87 (246)
..++++|||+|||.++++++|+++|++||.|.+|.+.+ ++|||||+|.+.++|.+|+..|||..+.|++|.|.++.
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~---~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~- 94 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR---DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFAT- 94 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET---TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC-
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC---CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecc-
Confidence 45678999999999999999999999999999998865 68999999999999999999999999999999999962
Q ss_pred CccccccccCccccccccccCCCCCCCChhHHhhhhhhhHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCCCC
Q psy4057 88 DSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPE 167 (246)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (246)
T Consensus 95 -------------------------------------------------------------------------------- 94 (261)
T 3sde_A 95 -------------------------------------------------------------------------------- 94 (261)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC----ccEEEEEeCCHHHHHHHHHHhCC-CccC--CCCceE
Q psy4057 168 QPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR----HDIAFVEFENEMQSAAAKLALHG-FKIT--PTHAMK 240 (246)
Q Consensus 168 ~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g-~~i~--~g~~l~ 240 (246)
++.+|||+|||..+|+++|+++|+.||.|.+++++.+. +|||||+|.+.++|.+|+..||+ ..+. .+++|.
T Consensus 95 --~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~ 172 (261)
T 3sde_A 95 --HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVI 172 (261)
T ss_dssp --CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCE
T ss_pred --cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEE
Confidence 35689999999999999999999999999999999874 58999999999999999999955 3332 179999
Q ss_pred EEeec
Q psy4057 241 ISFAK 245 (246)
Q Consensus 241 v~~ak 245 (246)
|.+++
T Consensus 173 v~~~~ 177 (261)
T 3sde_A 173 VEPME 177 (261)
T ss_dssp EEECC
T ss_pred Eeecc
Confidence 99975
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=4.7e-32 Score=223.59 Aligned_cols=155 Identities=17% Similarity=0.211 Sum_probs=137.7
Q ss_pred ccCCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC-CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEE
Q psy4057 5 LAHICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL-KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83 (246)
Q Consensus 5 ~~~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~-~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~ 83 (246)
+...+++++|||+|||.++++++|+++|+.||.|.+|.++++. .++|||||+|.+.++|.+|++ +||..+.|++|.|.
T Consensus 35 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~ 113 (292)
T 2ghp_A 35 LTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVS 113 (292)
T ss_dssp -------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEE
Confidence 3456789999999999999999999999999999999999865 458999999999999999995 99999999999999
Q ss_pred EccCCccccccccCccccccccccCCCCCCCChhHHhhhhhhhHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCC
Q psy4057 84 YSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATA 163 (246)
Q Consensus 84 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (246)
++
T Consensus 114 ~~------------------------------------------------------------------------------ 115 (292)
T 2ghp_A 114 HL------------------------------------------------------------------------------ 115 (292)
T ss_dssp EC------------------------------------------------------------------------------
T ss_pred EC------------------------------------------------------------------------------
Confidence 85
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHHccCC-CceEEEEeeCC----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCc
Q psy4057 164 GVPEQPPNQILFLTNLPEETSEMMLSMLFNQFP-GFKEVRLVPNR----HDIAFVEFENEMQSAAAKLALHGFKITPTHA 238 (246)
Q Consensus 164 ~~~~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G-~i~~v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~ 238 (246)
..++|||+|||.++++++|+++|+.|| .|..++++.++ +|||||+|.+.++|..|+..|||..+. |+.
T Consensus 116 ------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~-g~~ 188 (292)
T 2ghp_A 116 ------TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIE-GYT 188 (292)
T ss_dssp ------CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEET-TEE
T ss_pred ------CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeC-CcE
Confidence 367899999999999999999999999 99999998855 689999999999999999999999999 999
Q ss_pred eEEEeec
Q psy4057 239 MKISFAK 245 (246)
Q Consensus 239 l~v~~ak 245 (246)
|.|.||+
T Consensus 189 l~v~~a~ 195 (292)
T 2ghp_A 189 LVTKVSN 195 (292)
T ss_dssp CEEEECC
T ss_pred EEEEECC
Confidence 9999975
No 21
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.92 E-value=9.4e-25 Score=162.65 Aligned_cols=135 Identities=16% Similarity=0.201 Sum_probs=112.8
Q ss_pred CCccEEEEEEcCHHHHHHHHHHh-cCCccCCeeEEEEEccCCccccccccCccccccccccCCCCCCCChhHHhhhhhhh
Q psy4057 48 KMRGQAFVIFKEIASATNALRSM-QGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKA 126 (246)
Q Consensus 48 ~~kg~aFV~f~~~~~A~~Ai~~l-ng~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (246)
..+|+++|+|.+.++|++|++.+ ||..+.| .+.+.++............
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~----------------------------- 60 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHH----------------------------- 60 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSS-----------------------------
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCcccccccccc-----------------------------
Confidence 77899999999999999999999 9999999 9999987543211000000
Q ss_pred HHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeC
Q psy4057 127 AKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPN 206 (246)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~ 206 (246)
...........+.++|||+|||.++|+++|+++|++||.|.+++++.+
T Consensus 61 --------------------------------~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~ 108 (150)
T 2i2y_A 61 --------------------------------HHHHMHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN 108 (150)
T ss_dssp --------------------------------CCCCSCSSSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS
T ss_pred --------------------------------ccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC
Confidence 000011224457899999999999999999999999999999999999
Q ss_pred CccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEeec
Q psy4057 207 RHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAK 245 (246)
Q Consensus 207 ~~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~ak 245 (246)
.+|||||+|.+.++|..|+..|||..++ |++|+|+||+
T Consensus 109 ~~g~afV~f~~~~~a~~A~~~l~g~~~~-g~~l~v~~a~ 146 (150)
T 2i2y_A 109 PPGFAFVEFEDPRDAADAVRELDGRTLC-GCRVRVELSN 146 (150)
T ss_dssp SCSEEEEEESSHHHHHHHHHHHSSSCSS-SSCCEEEECC
T ss_pred CCcEEEEEECCHHHHHHHHHHcCCCEEC-CeEEEEEEcC
Confidence 8899999999999999999999999999 9999999986
No 22
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.92 E-value=2.9e-24 Score=161.36 Aligned_cols=140 Identities=16% Similarity=0.173 Sum_probs=106.5
Q ss_pred EEEccCC-CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEccCCccccccccCccccccccccCCCCCCCChhHH
Q psy4057 41 IVALKTL-KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEA 119 (246)
Q Consensus 41 v~~~~~~-~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (246)
+.+..++ +++|||||+|.+.++|++|++.+++....+..+.+......... ..
T Consensus 3 ~kl~ln~~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~---~~----------------------- 56 (158)
T 2kn4_A 3 YKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTV---TE----------------------- 56 (158)
T ss_dssp EEEEEECSSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEE---EC-----------------------
T ss_pred EEEEecCccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccc---cc-----------------------
Confidence 4555555 78999999999999999999988874443333333321111000 00
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHccCCCce
Q psy4057 120 KKSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFK 199 (246)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~ 199 (246)
.+. .........+.++|||+|||.++|+++|+++|++||.|.
T Consensus 57 ----------------------------~~~----------~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~ 98 (158)
T 2kn4_A 57 ----------------------------GSH----------HHHHHMDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVG 98 (158)
T ss_dssp ----------------------------CCC----------CSSCCCCCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEE
T ss_pred ----------------------------ccc----------ccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE
Confidence 000 001112345689999999999999999999999999999
Q ss_pred EEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEeec
Q psy4057 200 EVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAK 245 (246)
Q Consensus 200 ~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~ak 245 (246)
.++++.++ +|||||+|.+.++|..|++.|||..+. |++|+|.||+
T Consensus 99 ~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~-g~~l~v~~a~ 148 (158)
T 2kn4_A 99 DVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLD-GRELRVQMAR 148 (158)
T ss_dssp EEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESS-SSEEEEEEEC
T ss_pred EEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC-CeEEEEEECC
Confidence 99999874 589999999999999999999999999 9999999997
No 23
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.91 E-value=8.2e-25 Score=155.63 Aligned_cols=79 Identities=23% Similarity=0.395 Sum_probs=73.5
Q ss_pred CCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC-CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEccCC
Q psy4057 10 VTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL-KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTD 88 (246)
Q Consensus 10 ~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~-~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~~~ 88 (246)
.+.+|||+|||.++++++|+++|++||.|.+|+++++. .++|||||+|.+.++|++|++.|||..+.|++|+|.++..+
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 46789999999999999999999999999999998875 57899999999999999999999999999999999998655
No 24
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.87 E-value=7.3e-22 Score=136.41 Aligned_cols=78 Identities=17% Similarity=0.357 Sum_probs=73.1
Q ss_pred CCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC---CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEcc
Q psy4057 10 VTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL---KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSK 86 (246)
Q Consensus 10 ~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~ 86 (246)
.+++|||+|||.++++++|+++|++||.|.+|.++++. +++|||||+|.+.++|.+|++.|||..+.|++|+|.+|+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 36789999999999999999999999999999998764 788999999999999999999999999999999999985
Q ss_pred C
Q psy4057 87 T 87 (246)
Q Consensus 87 ~ 87 (246)
+
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 3
No 25
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.86 E-value=1.3e-21 Score=134.05 Aligned_cols=81 Identities=19% Similarity=0.292 Sum_probs=73.3
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCCccEEEEEeCCHHHHHHHHHHhCCCc--cCCCCceEE
Q psy4057 164 GVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFK--ITPTHAMKI 241 (246)
Q Consensus 164 ~~~~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~--i~~g~~l~v 241 (246)
.....+|+++|||+|||.++|+++|+++|++||.|.++++++++ |+|||+|.+.++|.+|++.|||.. +. |++|+|
T Consensus 14 ~~~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~k-g~AFVef~~~~~A~~Av~~ln~~~~~i~-Gr~i~V 91 (100)
T 3r27_A 14 DPHKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKK-RQALVEFEDVLGACNAVNYAADNQIYIA-GHPAFV 91 (100)
T ss_dssp ---CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETTT-TEEEEEESSHHHHHHHHHHHHHSCEEET-TEEEEE
T ss_pred ccccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcCC-CEEEEEECCHHHHHHHHHHhcCCCceeC-CcEEEE
Confidence 34467789999999999999999999999999999999999765 899999999999999999999986 77 999999
Q ss_pred EeecC
Q psy4057 242 SFAKK 246 (246)
Q Consensus 242 ~~ak~ 246 (246)
+|||.
T Consensus 92 ~~S~~ 96 (100)
T 3r27_A 92 NYSTS 96 (100)
T ss_dssp EECSC
T ss_pred Eeccc
Confidence 99974
No 26
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.86 E-value=1.5e-21 Score=134.85 Aligned_cols=76 Identities=20% Similarity=0.413 Sum_probs=71.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEe
Q psy4057 169 PPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISF 243 (246)
Q Consensus 169 ~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~ 243 (246)
..+++|||+|||.++|+++|+++|++||.|.+++++.++ +|||||+|.+.++|.+|++.|||..++ |++|+|+|
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~-gr~l~V~~ 95 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQ-SKTIKVSY 95 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEET-TEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEEC-CEEEEEEE
Confidence 357899999999999999999999999999999999865 579999999999999999999999999 99999999
Q ss_pred ec
Q psy4057 244 AK 245 (246)
Q Consensus 244 ak 245 (246)
||
T Consensus 96 Ak 97 (99)
T 4fxv_A 96 AR 97 (99)
T ss_dssp CC
T ss_pred ee
Confidence 97
No 27
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.86 E-value=4.6e-22 Score=141.36 Aligned_cols=81 Identities=25% Similarity=0.488 Sum_probs=76.9
Q ss_pred CCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEcc
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSK 86 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~ 86 (246)
..+++++|||+|||.++++++|+++|++||.|.+|.+++++.++|||||+|.+.++|..|++.|||..+.|++|.|.++.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp CTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 45678999999999999999999999999999999999998899999999999999999999999999999999999985
Q ss_pred C
Q psy4057 87 T 87 (246)
Q Consensus 87 ~ 87 (246)
.
T Consensus 84 ~ 84 (115)
T 3lqv_A 84 A 84 (115)
T ss_dssp H
T ss_pred C
Confidence 3
No 28
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.86 E-value=2.4e-21 Score=132.67 Aligned_cols=80 Identities=20% Similarity=0.306 Sum_probs=73.7
Q ss_pred cCCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCc--cCCeeEEEE
Q psy4057 6 AHICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFP--FYDKPMRIQ 83 (246)
Q Consensus 6 ~~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~--~~g~~l~v~ 83 (246)
...+|+++|||+|||+++++++|+++|++||.|.+|.+++ +||+|||+|.+.++|..|++.||+.. +.|++|+|.
T Consensus 16 ~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~---~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~ 92 (100)
T 3r27_A 16 HKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP---KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVN 92 (100)
T ss_dssp -CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET---TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEE
T ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc---CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEE
Confidence 3568999999999999999999999999999999999875 68999999999999999999999876 789999999
Q ss_pred EccCC
Q psy4057 84 YSKTD 88 (246)
Q Consensus 84 ~a~~~ 88 (246)
||+.+
T Consensus 93 ~S~~k 97 (100)
T 3r27_A 93 YSTSQ 97 (100)
T ss_dssp ECSCS
T ss_pred ecccc
Confidence 99765
No 29
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.85 E-value=2.9e-21 Score=139.07 Aligned_cols=91 Identities=29% Similarity=0.451 Sum_probs=80.8
Q ss_pred CCCCCcEEEecCCChhhhHHHHH----HHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEE
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLY----AIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRI 82 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~----~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v 82 (246)
..+|+++|||+|||..+++++|+ ++|++||.|.+|.+.++++++|||||+|.+.++|..|++.|||..+.|++|+|
T Consensus 25 ~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V 104 (127)
T 2a3j_A 25 HTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVI 104 (127)
T ss_dssp CCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEE
Confidence 45788999999999999998865 79999999999999888899999999999999999999999999999999999
Q ss_pred EEccCCccccccccC
Q psy4057 83 QYSKTDSDVISKIKG 97 (246)
Q Consensus 83 ~~a~~~~~~~~~~~~ 97 (246)
.|++.+........+
T Consensus 105 ~~a~~~~~~~~~~~~ 119 (127)
T 2a3j_A 105 TFSETPQSQVAEDGS 119 (127)
T ss_dssp EECCCCCHHHHCC--
T ss_pred EEccCcchhcccccc
Confidence 999887765544433
No 30
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.85 E-value=4.2e-21 Score=135.06 Aligned_cols=82 Identities=13% Similarity=0.154 Sum_probs=76.5
Q ss_pred CCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC---CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEE
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL---KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~ 83 (246)
..+|.++|||+||++++++++|+++|++||.|.+|.++++. +++|||||+|.+.++|.+|++.|||..+.|+.|+|.
T Consensus 2 g~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~ 81 (110)
T 3s8s_A 2 GQIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQ 81 (110)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 35788999999999999999999999999999999998764 788999999999999999999999999999999999
Q ss_pred EccCC
Q psy4057 84 YSKTD 88 (246)
Q Consensus 84 ~a~~~ 88 (246)
++...
T Consensus 82 ~a~~~ 86 (110)
T 3s8s_A 82 LDIKG 86 (110)
T ss_dssp ECSTT
T ss_pred ECCCC
Confidence 98654
No 31
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=6.1e-21 Score=131.94 Aligned_cols=80 Identities=15% Similarity=0.267 Sum_probs=73.7
Q ss_pred CCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcC--CccCCeeEEEEE
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQG--FPFYDKPMRIQY 84 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng--~~~~g~~l~v~~ 84 (246)
..+++++|||+|||+++++++|+++|++||.|.+|.++++ ||||||+|.+.++|..|++.|++ ..+.|++|+|.+
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~---kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 88 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG---KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 88 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC---CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 5678999999999999999999999999999999999874 89999999999999999998864 789999999999
Q ss_pred ccCCc
Q psy4057 85 SKTDS 89 (246)
Q Consensus 85 a~~~~ 89 (246)
+..+.
T Consensus 89 A~~~~ 93 (105)
T 1sjq_A 89 SNHKE 93 (105)
T ss_dssp CSSSS
T ss_pred cCCCC
Confidence 87653
No 32
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=2.3e-20 Score=129.76 Aligned_cols=78 Identities=18% Similarity=0.197 Sum_probs=71.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCCccEEEEEeCCHHHHHHHHHHhCCC--ccCCCCceEEEee
Q psy4057 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGF--KITPTHAMKISFA 244 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~--~i~~g~~l~v~~a 244 (246)
..+++++|||+|||.++++++|+++|++||.|.+|++++++ |||||+|.+.++|..|++.|++. .+. |++|+|.||
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~k-g~aFVef~~~~~A~~Ai~~l~~~~~~i~-Gr~l~V~~a 88 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFK-RQALVEFENIDSAKECVTFAADVPVYIA-GQQAFFNYS 88 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETTT-TEEEEEESSHHHHHHHHHHHHHSCCBSS-SSBCEEEEC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCC-CEEEEEECCHHHHHHHHHHhccCCceEC-CEEEEEEEc
Confidence 56689999999999999999999999999999999998874 89999999999999999999775 488 999999999
Q ss_pred cC
Q psy4057 245 KK 246 (246)
Q Consensus 245 k~ 246 (246)
+.
T Consensus 89 ~~ 90 (104)
T 1wex_A 89 TS 90 (104)
T ss_dssp SS
T ss_pred cC
Confidence 73
No 33
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=7.3e-21 Score=131.41 Aligned_cols=77 Identities=12% Similarity=0.184 Sum_probs=71.7
Q ss_pred CCCCcEEEEcCCCC-CCCHHHHHHHHccCCCceEEEEeeCCccEEEEEeCCHHHHHHHHHHhCCC--ccCCCCceEEEee
Q psy4057 168 QPPNQILFLTNLPE-ETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGF--KITPTHAMKISFA 244 (246)
Q Consensus 168 ~~~~~~l~v~nL~~-~~t~e~l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~--~i~~g~~l~v~~a 244 (246)
..++++|||+|||. ++|+++|+++|++||.|.+|++++++ |||||+|.+.++|..|++.|||. .|. |++|+|.||
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k-g~aFVef~~~~~A~~Ai~~l~~~~~~~~-Gr~l~V~~a 89 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI-NEAFIEMATTEDAQAAVDYYTTTPALVF-GKPVRVHLS 89 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS-SCEEEEESSHHHHHHHHHHHHHSCCEET-TEECEEEEE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC-CEEEEEECCHHHHHHHHHHHcCCCceEC-CcEEEEEEC
Confidence 44799999999999 99999999999999999999999886 89999999999999999999975 488 999999999
Q ss_pred cC
Q psy4057 245 KK 246 (246)
Q Consensus 245 k~ 246 (246)
++
T Consensus 90 ~~ 91 (102)
T 1x4d_A 90 QK 91 (102)
T ss_dssp CC
T ss_pred CC
Confidence 84
No 34
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.5e-20 Score=128.75 Aligned_cols=79 Identities=16% Similarity=0.287 Sum_probs=72.6
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCCccEEEEEeCCHHHHHHHHHHhC--CCccCCCCceEEEe
Q psy4057 166 PEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALH--GFKITPTHAMKISF 243 (246)
Q Consensus 166 ~~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~--g~~i~~g~~l~v~~ 243 (246)
...+++++|||+|||.++++++|+++|++||.|.+++++++ +|||||+|.+.++|..|++.|+ +..+. |++|+|.|
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-kg~aFVef~~~~~A~~Ai~~l~~~~~~~~-Gr~l~V~~ 87 (101)
T 2cq1_A 10 MDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG-KNQAFLELATEEAAITMVNYYSAVTPHLR-NQPIYIQY 87 (101)
T ss_dssp CCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHHHSCCEET-TEECEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-CCEEEEEECCHHHHHHHHHHhccCCceEC-CcEEEEEE
Confidence 35668999999999999999999999999999999999987 4999999999999999999874 67899 99999999
Q ss_pred ecC
Q psy4057 244 AKK 246 (246)
Q Consensus 244 ak~ 246 (246)
|+.
T Consensus 88 a~~ 90 (101)
T 2cq1_A 88 SNH 90 (101)
T ss_dssp CSC
T ss_pred cCc
Confidence 973
No 35
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.84 E-value=2.2e-20 Score=131.39 Aligned_cols=78 Identities=17% Similarity=0.214 Sum_probs=73.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEE
Q psy4057 168 QPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKIS 242 (246)
Q Consensus 168 ~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~ 242 (246)
.++.++|||+|||.++++++|+++|++||.|.+++++.++ +|||||+|.+.++|.+|++.|||+.++ |+.|+|.
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~-gr~i~V~ 81 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVM-GNIIHAQ 81 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET-TEECEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEEC-CeEEEEE
Confidence 3578999999999999999999999999999999999875 589999999999999999999999999 9999999
Q ss_pred eecC
Q psy4057 243 FAKK 246 (246)
Q Consensus 243 ~ak~ 246 (246)
+|++
T Consensus 82 ~a~~ 85 (110)
T 3s8s_A 82 LDIK 85 (110)
T ss_dssp ECST
T ss_pred ECCC
Confidence 9864
No 36
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.84 E-value=2.3e-21 Score=131.81 Aligned_cols=79 Identities=19% Similarity=0.362 Sum_probs=72.2
Q ss_pred CcEEEecCCChhhhHHHHHHHhhccC-CeeEEEEccCC---CCccEEEEEEcCHHHHHHHHHHhc-CCccCCeeEEEEEc
Q psy4057 11 TNFVYVTHISSTDLKKSLYAIFSQFG-QIMDIVALKTL---KMRGQAFVIFKEIASATNALRSMQ-GFPFYDKPMRIQYS 85 (246)
Q Consensus 11 ~~~l~V~nl~~~~~e~~l~~~F~~fG-~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~ln-g~~~~g~~l~v~~a 85 (246)
+++|||+|||.++++++|+++|++|| .|.+|+++++. +++|||||+|.+.++|.+|++.++ +..+.|++|+|.+|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 58999999999999999999999999 89999998764 789999999999999999999874 57899999999999
Q ss_pred cCCc
Q psy4057 86 KTDS 89 (246)
Q Consensus 86 ~~~~ 89 (246)
.++.
T Consensus 81 ~~~~ 84 (91)
T 2lxi_A 81 DPKP 84 (91)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 7654
No 37
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=6e-21 Score=131.97 Aligned_cols=78 Identities=15% Similarity=0.260 Sum_probs=72.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCCccEEEEEeCCHHHHHHHHHHhCC--CccCCCCceEEEee
Q psy4057 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHG--FKITPTHAMKISFA 244 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g--~~i~~g~~l~v~~a 244 (246)
..+++++|||+|||.++|+++|+++|++||.|.+|++++++ |||||+|.+.++|..|++.|++ ..+. |++|+|.||
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~k-GfaFVeF~~~~~A~~Ai~~l~~~~~~l~-Gr~l~V~~A 89 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGK-NQAFIEMNTEEAANTMVNYYTSVTPVLR-GQPIYIQFS 89 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTT-TEEEEEESSHHHHHHHHHHHTTSCCEET-TEECCBCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCC-CEEEEEECCHHHHHHHHHHhccCCceEC-CEEEEEEEc
Confidence 34579999999999999999999999999999999999985 9999999999999999999874 7899 999999998
Q ss_pred cC
Q psy4057 245 KK 246 (246)
Q Consensus 245 k~ 246 (246)
+.
T Consensus 90 ~~ 91 (105)
T 1sjq_A 90 NH 91 (105)
T ss_dssp SS
T ss_pred CC
Confidence 73
No 38
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.83 E-value=1.4e-20 Score=124.50 Aligned_cols=75 Identities=9% Similarity=0.149 Sum_probs=71.3
Q ss_pred CCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEc
Q psy4057 8 ICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYS 85 (246)
Q Consensus 8 ~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a 85 (246)
...+..|||+||+++++|++|+++|.+||+|.++.+.. +||||||+|.+.++|.+|++.||+..+.|++|+|.+|
T Consensus 4 ~~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~---~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 4 AWGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL---NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET---TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CCccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC---CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 35688999999999999999999999999999999865 8999999999999999999999999999999999998
No 39
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.2e-20 Score=132.27 Aligned_cols=80 Identities=15% Similarity=0.237 Sum_probs=73.5
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCCccEEEEEeCCHHHHHHHHHHhCC--CccCCCCceEEE
Q psy4057 165 VPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHG--FKITPTHAMKIS 242 (246)
Q Consensus 165 ~~~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g--~~i~~g~~l~v~ 242 (246)
....+++++|||+|||.++|+++|+++|++||.|.+|+++++ +|||||+|.+.++|.+|++.|++ ..+. |++|+|.
T Consensus 25 ~~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~-Gr~l~V~ 102 (119)
T 2ad9_A 25 RSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-KNQAFIEMNTEEAANTMVNYYTSVTPVLR-GQPIYIQ 102 (119)
T ss_dssp TSCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-GTEEEEECSCHHHHHHHHHHHHHHCCCBT-TBCCEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhccCCceEC-CeEEEEE
Confidence 345668999999999999999999999999999999999988 49999999999999999999984 6899 9999999
Q ss_pred eecC
Q psy4057 243 FAKK 246 (246)
Q Consensus 243 ~ak~ 246 (246)
||+.
T Consensus 103 ~a~~ 106 (119)
T 2ad9_A 103 FSNH 106 (119)
T ss_dssp ECSS
T ss_pred EccC
Confidence 9973
No 40
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.83 E-value=8e-21 Score=130.75 Aligned_cols=87 Identities=62% Similarity=0.987 Sum_probs=78.3
Q ss_pred ccCCCCCcEEEecCCChhhhHHHHH----HHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeE
Q psy4057 5 LAHICVTNFVYVTHISSTDLKKSLY----AIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPM 80 (246)
Q Consensus 5 ~~~~~~~~~l~V~nl~~~~~e~~l~----~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l 80 (246)
+...+|+++|||+|||.++++++|+ ++|++||.|.+|.+.++++++|||||+|.+.++|..|++.|||..+.|++|
T Consensus 2 ~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 2 VPETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp ----CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 3467899999999999999999999 999999999999998777889999999999999999999999999999999
Q ss_pred EEEEccCCccc
Q psy4057 81 RIQYSKTDSDV 91 (246)
Q Consensus 81 ~v~~a~~~~~~ 91 (246)
+|.++......
T Consensus 82 ~v~~a~~~~~~ 92 (97)
T 1nu4_A 82 RIQYAKTDSDI 92 (97)
T ss_dssp EEEECSSCCTH
T ss_pred EEEEccCCCcc
Confidence 99999876543
No 41
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.83 E-value=2.9e-20 Score=127.70 Aligned_cols=81 Identities=19% Similarity=0.436 Sum_probs=76.0
Q ss_pred CCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccC---CCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEcc
Q psy4057 10 VTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKT---LKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSK 86 (246)
Q Consensus 10 ~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~---~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~ 86 (246)
|+++|||+|||.++++++|+++|++||.|.+|.+.++ ++++|||||+|.+.++|.+|++.|||..+.|++|+|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 6899999999999999999999999999999999876 4779999999999999999999999999999999999997
Q ss_pred CCcc
Q psy4057 87 TDSD 90 (246)
Q Consensus 87 ~~~~ 90 (246)
....
T Consensus 81 ~~~~ 84 (96)
T 2x1f_A 81 NSDI 84 (96)
T ss_dssp CSSG
T ss_pred CCCC
Confidence 7653
No 42
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.83 E-value=2.3e-20 Score=125.77 Aligned_cols=82 Identities=26% Similarity=0.374 Sum_probs=72.7
Q ss_pred CCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC---CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEE
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL---KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~ 83 (246)
..+++++|||+|||.++++++|+++|++||.|.+|.++++. +++|||||+|.+.++|.+|++.|||..+.|++|+|.
T Consensus 2 p~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 81 (87)
T 3bs9_A 2 PLGSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 81 (87)
T ss_dssp ----CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34678999999999999999999999999999999998753 678999999999999999999999999999999999
Q ss_pred EccCC
Q psy4057 84 YSKTD 88 (246)
Q Consensus 84 ~a~~~ 88 (246)
++..+
T Consensus 82 ~a~~k 86 (87)
T 3bs9_A 82 WATRK 86 (87)
T ss_dssp EEC--
T ss_pred ecCCC
Confidence 98654
No 43
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=5e-20 Score=129.52 Aligned_cols=83 Identities=19% Similarity=0.295 Sum_probs=78.0
Q ss_pred CCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEcc
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSK 86 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~ 86 (246)
...++++|||+|||.++++++|+++|++||.|.+|.+..+++++|||||+|.+.++|.+|++.||+..+.|++|+|.+++
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 97 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR 97 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcc
Confidence 45678999999999999999999999999999999998888899999999999999999999999999999999999987
Q ss_pred CCc
Q psy4057 87 TDS 89 (246)
Q Consensus 87 ~~~ 89 (246)
...
T Consensus 98 ~~~ 100 (109)
T 1x4a_A 98 SGR 100 (109)
T ss_dssp CCC
T ss_pred cCC
Confidence 653
No 44
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.83 E-value=3.2e-20 Score=124.52 Aligned_cols=80 Identities=29% Similarity=0.405 Sum_probs=74.5
Q ss_pred CCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC---CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEE
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL---KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~ 83 (246)
..+++++|||+|||.++++++|+++|++||.|.+|.++++. +++|||||+|.+.++|.+|++.|||..+.|++|+|.
T Consensus 3 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 82 (85)
T 3mdf_A 3 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 82 (85)
T ss_dssp CCCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 35688999999999999999999999999999999998763 678999999999999999999999999999999999
Q ss_pred Ecc
Q psy4057 84 YSK 86 (246)
Q Consensus 84 ~a~ 86 (246)
+++
T Consensus 83 ~ak 85 (85)
T 3mdf_A 83 LAK 85 (85)
T ss_dssp ECC
T ss_pred EcC
Confidence 974
No 45
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.83 E-value=4.1e-20 Score=124.00 Aligned_cols=77 Identities=23% Similarity=0.412 Sum_probs=72.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEE
Q psy4057 168 QPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKIS 242 (246)
Q Consensus 168 ~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~ 242 (246)
.++.++|||+|||.++++++|+++|++||.|.+++++.++ +|||||+|.+.++|..|++.|||..++ |++|+|+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~-g~~l~v~ 82 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF-GRTIRVN 82 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEET-TEECEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEEC-CcEEEEE
Confidence 4578999999999999999999999999999999998863 589999999999999999999999999 9999999
Q ss_pred eec
Q psy4057 243 FAK 245 (246)
Q Consensus 243 ~ak 245 (246)
|||
T Consensus 83 ~ak 85 (85)
T 3mdf_A 83 LAK 85 (85)
T ss_dssp ECC
T ss_pred EcC
Confidence 997
No 46
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4.3e-20 Score=127.60 Aligned_cols=81 Identities=19% Similarity=0.288 Sum_probs=74.0
Q ss_pred cCCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhc--CCccCCeeEEEE
Q psy4057 6 AHICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQ--GFPFYDKPMRIQ 83 (246)
Q Consensus 6 ~~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~ln--g~~~~g~~l~v~ 83 (246)
...+|+++|||+|||.++++++|+++|++||.|.+|.++++ ||||||+|.+.++|..|++.|+ +..+.|++|+|.
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 86 (101)
T 2cq1_A 10 MDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG---KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQ 86 (101)
T ss_dssp CCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC---CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEE
Confidence 35678999999999999999999999999999999988774 8999999999999999999774 678999999999
Q ss_pred EccCCc
Q psy4057 84 YSKTDS 89 (246)
Q Consensus 84 ~a~~~~ 89 (246)
|+..+.
T Consensus 87 ~a~~~~ 92 (101)
T 2cq1_A 87 YSNHKE 92 (101)
T ss_dssp ECSCSS
T ss_pred EcCccc
Confidence 997654
No 47
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=6.8e-20 Score=125.57 Aligned_cols=83 Identities=28% Similarity=0.463 Sum_probs=77.2
Q ss_pred CCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC---CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEE
Q psy4057 8 ICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL---KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQY 84 (246)
Q Consensus 8 ~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 84 (246)
.+++++|||+|||.++++++|+++|++||.|.+|.++++. +++|||||+|.+.++|.+|++.|||..+.|++|+|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 4678999999999999999999999999999999998863 6889999999999999999999999999999999999
Q ss_pred ccCCcc
Q psy4057 85 SKTDSD 90 (246)
Q Consensus 85 a~~~~~ 90 (246)
+..+..
T Consensus 82 a~~~~~ 87 (95)
T 2dnz_A 82 VTERLD 87 (95)
T ss_dssp SSCCCC
T ss_pred cccccC
Confidence 976643
No 48
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=3e-20 Score=131.60 Aligned_cols=80 Identities=15% Similarity=0.258 Sum_probs=73.9
Q ss_pred CCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhc--CCccCCeeEEEEE
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQ--GFPFYDKPMRIQY 84 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~ln--g~~~~g~~l~v~~ 84 (246)
..+|+++|||+|||+++++++|+++|++||.|.+|.++++ ||||||+|.+.++|.+|++.|+ +..+.|++|+|.+
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~---kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~ 103 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG---KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 103 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG---GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEE
Confidence 5678999999999999999999999999999999999874 8999999999999999999887 4789999999999
Q ss_pred ccCCc
Q psy4057 85 SKTDS 89 (246)
Q Consensus 85 a~~~~ 89 (246)
+..+.
T Consensus 104 a~~k~ 108 (119)
T 2ad9_A 104 SNHKE 108 (119)
T ss_dssp CSSSS
T ss_pred ccCCC
Confidence 97653
No 49
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=2.7e-20 Score=128.56 Aligned_cols=80 Identities=19% Similarity=0.316 Sum_probs=72.9
Q ss_pred CCCCCcEEEecCCCh-hhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcC--CccCCeeEEEE
Q psy4057 7 HICVTNFVYVTHISS-TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQG--FPFYDKPMRIQ 83 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~-~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng--~~~~g~~l~v~ 83 (246)
...|+++|||+|||. ++++++|+++|++||.|.+|.+++ .+|||||+|.+.++|..|++.||+ ..+.|++|+|.
T Consensus 11 ~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~---~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 87 (102)
T 1x4d_A 11 RVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILN---KINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVH 87 (102)
T ss_dssp CCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECS---SSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEc---CCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEE
Confidence 467899999999999 999999999999999999999976 469999999999999999999986 45999999999
Q ss_pred EccCCc
Q psy4057 84 YSKTDS 89 (246)
Q Consensus 84 ~a~~~~ 89 (246)
+|....
T Consensus 88 ~a~~~~ 93 (102)
T 1x4d_A 88 LSQKYK 93 (102)
T ss_dssp EECCCT
T ss_pred ECCCCC
Confidence 997543
No 50
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=7.9e-20 Score=127.17 Aligned_cols=85 Identities=22% Similarity=0.286 Sum_probs=78.4
Q ss_pred ccCCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC-CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEE
Q psy4057 5 LAHICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL-KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83 (246)
Q Consensus 5 ~~~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~-~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~ 83 (246)
+....+.++|||+|||.++++++|+++|++||.|.+|.++++. .++|||||+|.+.++|.+|++.|||..+.|++|+|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2cqi_A 9 MEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 88 (103)
T ss_dssp CCCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEE
Confidence 3456788999999999999999999999999999999998875 578999999999999999999999999999999999
Q ss_pred EccCCc
Q psy4057 84 YSKTDS 89 (246)
Q Consensus 84 ~a~~~~ 89 (246)
++....
T Consensus 89 ~a~~~~ 94 (103)
T 2cqi_A 89 WATTPS 94 (103)
T ss_dssp ECCCTT
T ss_pred ECCCCc
Confidence 987654
No 51
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=3.7e-20 Score=128.68 Aligned_cols=81 Identities=20% Similarity=0.313 Sum_probs=73.8
Q ss_pred cCCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcC--CccCCeeEEEE
Q psy4057 6 AHICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQG--FPFYDKPMRIQ 83 (246)
Q Consensus 6 ~~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng--~~~~g~~l~v~ 83 (246)
...+|+++|||+|||.++++++|+++|++||.|.+|.+++ .||||||+|.+.++|.+|++.|++ ..+.|++|+|.
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~---~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 10 HKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMP---FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET---TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC---CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 4578899999999999999999999999999999999876 489999999999999999998876 45899999999
Q ss_pred EccCCc
Q psy4057 84 YSKTDS 89 (246)
Q Consensus 84 ~a~~~~ 89 (246)
|+..+.
T Consensus 87 ~a~~~~ 92 (104)
T 1wex_A 87 YSTSKR 92 (104)
T ss_dssp ECSSSS
T ss_pred EccCcc
Confidence 997654
No 52
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.82 E-value=2.6e-20 Score=127.31 Aligned_cols=81 Identities=20% Similarity=0.354 Sum_probs=73.1
Q ss_pred CCCCCcEEEecCCChhhhHHHHHHHhhccCC--eeEEEEccCC---CCccEEEEEEcCHHHHHHHHHHhcCC----ccCC
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLYAIFSQFGQ--IMDIVALKTL---KMRGQAFVIFKEIASATNALRSMQGF----PFYD 77 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~--i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng~----~~~g 77 (246)
....=++|||+|||+++++++|+++|++||. |.+|+++++. ++||||||+|.+.++|.+|++.|||. .+.|
T Consensus 5 ~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G 84 (95)
T 2lkz_A 5 HHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG 84 (95)
T ss_dssp SSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT
T ss_pred cCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC
Confidence 5566789999999999999999999999995 6789988764 78999999999999999999999996 4899
Q ss_pred eeEEEEEccC
Q psy4057 78 KPMRIQYSKT 87 (246)
Q Consensus 78 ~~l~v~~a~~ 87 (246)
|+|.|.||+.
T Consensus 85 r~i~V~~Aks 94 (95)
T 2lkz_A 85 KTIGVDFAKS 94 (95)
T ss_dssp EEEEEEECCC
T ss_pred EEEEEEEccC
Confidence 9999999863
No 53
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.82 E-value=3.2e-20 Score=122.77 Aligned_cols=74 Identities=18% Similarity=0.209 Sum_probs=70.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCCccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEeec
Q psy4057 170 PNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAK 245 (246)
Q Consensus 170 ~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~ak 245 (246)
.+.-|||+||+..+|+++|+++|.+||+|.++++... +|||||+|.+.++|..|++.|||..++ |++|+|.+|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~-kGfaFVey~~~~eA~~Ai~~Ln~~~l~-gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLN-QGIALCKYTTREEANKAQMALNNCVLA-NTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHTTEEET-TEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCC-CcEEEEEECCHHHHHHHHHHhcCCEEC-CcEEEEEECC
Confidence 5788999999999999999999999999999999885 599999999999999999999999999 9999999985
No 54
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.82 E-value=1.6e-20 Score=128.32 Aligned_cols=76 Identities=20% Similarity=0.387 Sum_probs=69.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHccCCC--ceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCC----ccCCCC
Q psy4057 169 PPNQILFLTNLPEETSEMMLSMLFNQFPG--FKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGF----KITPTH 237 (246)
Q Consensus 169 ~~~~~l~v~nL~~~~t~e~l~~~f~~~G~--i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~----~i~~g~ 237 (246)
..-.+|||+|||+++|+++|+++|++||. +.+|++++|+ +|||||+|.+.++|.+|++.|||. .|+ |+
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~-Gr 85 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKID-GK 85 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEET-TE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceEC-CE
Confidence 35678999999999999999999999995 6799999875 589999999999999999999997 488 99
Q ss_pred ceEEEeec
Q psy4057 238 AMKISFAK 245 (246)
Q Consensus 238 ~l~v~~ak 245 (246)
+|.|+|||
T Consensus 86 ~i~V~~Ak 93 (95)
T 2lkz_A 86 TIGVDFAK 93 (95)
T ss_dssp EEEEEECC
T ss_pred EEEEEEcc
Confidence 99999998
No 55
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=7.9e-20 Score=124.98 Aligned_cols=78 Identities=18% Similarity=0.346 Sum_probs=73.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEE
Q psy4057 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKI 241 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v 241 (246)
..++.++|||+|||.++++++|+++|++||.|.+++++.++ +|||||+|.+.++|.+|++.|||..+. |++|+|
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~l~v 90 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLF-GRVIKA 90 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEET-TEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeC-CcEEEE
Confidence 45678999999999999999999999999999999999864 479999999999999999999999999 999999
Q ss_pred Eeec
Q psy4057 242 SFAK 245 (246)
Q Consensus 242 ~~ak 245 (246)
+|||
T Consensus 91 ~~ak 94 (94)
T 2e5h_A 91 SIAI 94 (94)
T ss_dssp EECC
T ss_pred EecC
Confidence 9997
No 56
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=6.3e-20 Score=126.03 Aligned_cols=83 Identities=17% Similarity=0.190 Sum_probs=76.7
Q ss_pred CCCCCcEEEecCCChhhhHHHHH----HHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEE
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLY----AIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRI 82 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~----~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v 82 (246)
.....++|||+|||.++++++|+ ++|++||.|.+|.++.+...+|||||+|.+.++|.+|++.|||..+.|++|+|
T Consensus 5 ~~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V 84 (96)
T 2dgx_A 5 SSGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILV 84 (96)
T ss_dssp CCSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34567899999999999999999 99999999999999987755999999999999999999999999999999999
Q ss_pred EEccCCc
Q psy4057 83 QYSKTDS 89 (246)
Q Consensus 83 ~~a~~~~ 89 (246)
.++....
T Consensus 85 ~~a~~~~ 91 (96)
T 2dgx_A 85 SLATGAS 91 (96)
T ss_dssp EECCCSS
T ss_pred EEcCCCC
Confidence 9987653
No 57
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.82 E-value=5.1e-20 Score=130.70 Aligned_cols=75 Identities=19% Similarity=0.294 Sum_probs=70.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC---ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEeec
Q psy4057 170 PNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR---HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAK 245 (246)
Q Consensus 170 ~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~---~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~ak 245 (246)
.+.+|||+|||.++|+++|+++|++||.|.+|+++.+. +|||||+|.+.++|.+|++.|||..|+ |+.|+|.+|+
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~-g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLN-DRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEET-TEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEEC-CEEEEEEECC
Confidence 36789999999999999999999999999999999875 589999999999999999999999999 9999999986
No 58
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.82 E-value=8.8e-20 Score=129.65 Aligned_cols=85 Identities=26% Similarity=0.431 Sum_probs=78.5
Q ss_pred ccCCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC--CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEE
Q psy4057 5 LAHICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL--KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRI 82 (246)
Q Consensus 5 ~~~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~--~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v 82 (246)
|.+..+.++|||+|||.++++++|+++|++||.|.+|.+..+. +++|||||+|.+.++|++|++.|||..+.|++|+|
T Consensus 1 m~e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V 80 (116)
T 2fy1_A 1 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKV 80 (116)
T ss_dssp CCTTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3456788999999999999999999999999999999998854 78899999999999999999999999999999999
Q ss_pred EEccCCc
Q psy4057 83 QYSKTDS 89 (246)
Q Consensus 83 ~~a~~~~ 89 (246)
.++....
T Consensus 81 ~~a~~~~ 87 (116)
T 2fy1_A 81 EQAKKPS 87 (116)
T ss_dssp EECCCSS
T ss_pred EECCCCC
Confidence 9997654
No 59
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.1e-19 Score=124.48 Aligned_cols=80 Identities=25% Similarity=0.331 Sum_probs=74.4
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceE
Q psy4057 166 PEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMK 240 (246)
Q Consensus 166 ~~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~ 240 (246)
...+++++|||+|||.++++++|+++|++||.|.+++++.++ +|||||+|.+.++|.+|+..|||..+. |++|+
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~l~ 88 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELD-GRRIR 88 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEET-TEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC-CEEEE
Confidence 355679999999999999999999999999999999999864 479999999999999999999999999 99999
Q ss_pred EEeecC
Q psy4057 241 ISFAKK 246 (246)
Q Consensus 241 v~~ak~ 246 (246)
|+||+.
T Consensus 89 v~~a~~ 94 (95)
T 2cqc_A 89 VSGPSS 94 (95)
T ss_dssp EECCSC
T ss_pred EEecCC
Confidence 999973
No 60
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=6.8e-20 Score=125.32 Aligned_cols=80 Identities=24% Similarity=0.472 Sum_probs=75.0
Q ss_pred CCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC---CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEE
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL---KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~ 83 (246)
..+++++|||+|||.++++++|+++|++||.|.+|.++++. +++|||||+|.+.++|.+|++.|||..+.|++|+|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45778999999999999999999999999999999998864 678999999999999999999999999999999999
Q ss_pred Ecc
Q psy4057 84 YSK 86 (246)
Q Consensus 84 ~a~ 86 (246)
+|+
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 974
No 61
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.82 E-value=2.3e-19 Score=123.89 Aligned_cols=78 Identities=24% Similarity=0.339 Sum_probs=73.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceE--------EEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCcc
Q psy4057 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKE--------VRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKI 233 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~--------v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i 233 (246)
..++.++|||+|||.++++++|+++|++||.|.. ++++.++ +|||||+|.+.++|..|++.|||..+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 4557999999999999999999999999999999 9999874 58999999999999999999999999
Q ss_pred CCCCceEEEeec
Q psy4057 234 TPTHAMKISFAK 245 (246)
Q Consensus 234 ~~g~~l~v~~ak 245 (246)
. |+.|+|+||+
T Consensus 89 ~-g~~l~V~~A~ 99 (99)
T 2la6_A 89 S-GNPIKVSFAT 99 (99)
T ss_dssp S-SSBCEEEECC
T ss_pred C-CcEEEEEecC
Confidence 9 9999999986
No 62
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.82 E-value=5e-20 Score=129.24 Aligned_cols=86 Identities=22% Similarity=0.388 Sum_probs=78.5
Q ss_pred cccCCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC---CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeE
Q psy4057 4 ILAHICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL---KMRGQAFVIFKEIASATNALRSMQGFPFYDKPM 80 (246)
Q Consensus 4 ~~~~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l 80 (246)
+....+++++|||+|||.++++++|+++|++||.|.+|.++++. +++|||||+|.+.++|.+|++.|||..+.|++|
T Consensus 19 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l 98 (108)
T 2jrs_A 19 LQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPM 98 (108)
T ss_dssp SCCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred cccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34556778999999999999999999999999999999998763 678999999999999999999999999999999
Q ss_pred EEEEccCCc
Q psy4057 81 RIQYSKTDS 89 (246)
Q Consensus 81 ~v~~a~~~~ 89 (246)
+|.++.++.
T Consensus 99 ~V~~a~~k~ 107 (108)
T 2jrs_A 99 KVGHVTERT 107 (108)
T ss_dssp EEECSCSSC
T ss_pred EEEEcccCC
Confidence 999987654
No 63
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.82 E-value=3.2e-20 Score=128.69 Aligned_cols=76 Identities=25% Similarity=0.350 Sum_probs=72.2
Q ss_pred cEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEccCCc
Q psy4057 12 NFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTDS 89 (246)
Q Consensus 12 ~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~~~~ 89 (246)
++|||+|||.++++++|+++|++||.|.+|.+.++ ++|||||+|.+.++|.+|++.|||..+.|++|+|.++....
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN--PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS--SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 48999999999999999999999999999999887 89999999999999999999999999999999999987653
No 64
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1.6e-19 Score=124.75 Aligned_cols=79 Identities=22% Similarity=0.399 Sum_probs=74.0
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCCccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEeec
Q psy4057 166 PEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAK 245 (246)
Q Consensus 166 ~~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~ak 245 (246)
...++.++|||+|||.++++++|+++|++||.|..+++.+++ |||||+|.+.++|.+|++.|||..+. |++|+|.||+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~k-g~afV~f~~~~~a~~a~~~l~g~~~~-g~~l~v~~a~ 87 (99)
T 2cpj_A 10 KTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDK-GFGFIRLETRTLAEIAKVELDNMPLR-GKQLRVRFAC 87 (99)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTT-TEEEEECSSSHHHHHHHHHHTTCCBT-TBCCEEEESS
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCC-CEEEEEECCHHHHHHHHHHhCCCEeC-CceEEEEEcC
Confidence 345678999999999999999999999999999999999875 89999999999999999999999999 9999999987
Q ss_pred C
Q psy4057 246 K 246 (246)
Q Consensus 246 ~ 246 (246)
.
T Consensus 88 ~ 88 (99)
T 2cpj_A 88 H 88 (99)
T ss_dssp C
T ss_pred C
Confidence 3
No 65
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.8e-19 Score=125.29 Aligned_cols=83 Identities=20% Similarity=0.303 Sum_probs=77.3
Q ss_pred CCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC-CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEc
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL-KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYS 85 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~-~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a 85 (246)
...+.++|||+|||.++++++|+++|++||.|.+|.++++. .++|||||+|.+.++|.+|++.|||..+.|++|+|.++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 90 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 90 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 45678999999999999999999999999999999998775 57899999999999999999999999999999999998
Q ss_pred cCCc
Q psy4057 86 KTDS 89 (246)
Q Consensus 86 ~~~~ 89 (246)
..+.
T Consensus 91 ~~~~ 94 (103)
T 2cq3_A 91 TARV 94 (103)
T ss_dssp CSSC
T ss_pred ccCC
Confidence 7654
No 66
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1.1e-19 Score=125.40 Aligned_cols=84 Identities=21% Similarity=0.287 Sum_probs=77.5
Q ss_pred CCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC---CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEE
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL---KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~ 83 (246)
...++++|||+|||.++++++|+++|++||.|.+|.++++. +++|||||+|.+.++|.+|++.|||..+.|++|+|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 4 GSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp CCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 45678999999999999999999999999999999998754 788999999999999999999999999999999999
Q ss_pred EccCCcc
Q psy4057 84 YSKTDSD 90 (246)
Q Consensus 84 ~a~~~~~ 90 (246)
++..+..
T Consensus 84 ~a~~~~~ 90 (99)
T 1whw_A 84 PSTIKKE 90 (99)
T ss_dssp ECCCCST
T ss_pred EcCCCcc
Confidence 9976643
No 67
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.81 E-value=9.8e-20 Score=121.56 Aligned_cols=78 Identities=26% Similarity=0.351 Sum_probs=73.0
Q ss_pred CcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccC---CCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEccC
Q psy4057 11 TNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKT---LKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKT 87 (246)
Q Consensus 11 ~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~---~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~~ 87 (246)
+.+|||+|||.++++++|+++|++||.|.++.++++ ++++|||||+|.+.++|.+|++.|||..+.|++|+|.++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 468999999999999999999999999999999876 37789999999999999999999999999999999999875
Q ss_pred C
Q psy4057 88 D 88 (246)
Q Consensus 88 ~ 88 (246)
+
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 68
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.81 E-value=1.2e-19 Score=122.32 Aligned_cols=77 Identities=18% Similarity=0.330 Sum_probs=71.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEe
Q psy4057 169 PPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISF 243 (246)
Q Consensus 169 ~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~ 243 (246)
++.++|||+|||.++++++|+++|++||.|.+++++.++ +|||||+|.+.++|..|++.|||..++ |+.|+|.|
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~l~v~~ 82 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLG-GRQIRTNW 82 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET-TEECEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC-CeEEEEEe
Confidence 468899999999999999999999999999999999875 589999999999999999999999999 99999999
Q ss_pred ecC
Q psy4057 244 AKK 246 (246)
Q Consensus 244 ak~ 246 (246)
|+.
T Consensus 83 a~~ 85 (87)
T 3bs9_A 83 ATR 85 (87)
T ss_dssp EC-
T ss_pred cCC
Confidence 974
No 69
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=7.4e-20 Score=122.74 Aligned_cols=77 Identities=17% Similarity=0.336 Sum_probs=72.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCCccEEEEEeCCHHHHHHHHHHh-CCCccCCCCceEEEeec
Q psy4057 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLAL-HGFKITPTHAMKISFAK 245 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l-~g~~i~~g~~l~v~~ak 245 (246)
..++.++|||+|||.++++++|+++|++||.|.++++++++ |||||+|.+.++|..|+..| ||..+. |++|+|.|||
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~k-g~afV~f~~~~~A~~a~~~l~~~~~~~-g~~l~v~~ak 85 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQ-QCAFIQFATRQAAEVAAEKSFNKLIVN-GRRLNVKWGR 85 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGG-TEEEEEESSHHHHHHHHHTTTTTCEET-TEECCEEECC
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCC-CEEEEEECCHHHHHHHHHHhcCCeeEC-CCEEEEEecC
Confidence 45578999999999999999999999999999999999864 89999999999999999999 999999 9999999997
No 70
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.1e-19 Score=125.71 Aligned_cols=84 Identities=17% Similarity=0.312 Sum_probs=77.3
Q ss_pred cCCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC--CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEE
Q psy4057 6 AHICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL--KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83 (246)
Q Consensus 6 ~~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~--~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~ 83 (246)
....++++|||+|||.++++++|+++|++||.|.+|.+..+. +++|||||+|.+.++|.+|++.|||..+.|++|+|.
T Consensus 12 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 12 STSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp SSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 355678999999999999999999999999999999998765 678999999999999999999999999999999999
Q ss_pred EccCCc
Q psy4057 84 YSKTDS 89 (246)
Q Consensus 84 ~a~~~~ 89 (246)
++.++.
T Consensus 92 ~a~~~~ 97 (100)
T 2do4_A 92 ISNSGP 97 (100)
T ss_dssp ECCCCS
T ss_pred ECCCCC
Confidence 987653
No 71
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.81 E-value=7.1e-20 Score=126.70 Aligned_cols=79 Identities=20% Similarity=0.267 Sum_probs=73.9
Q ss_pred CCCcEEEecCCCh------hhhHHHHHHHhhccCCeeEEEEccCC---CCccEEEEEEcCHHHHHHHHHHhcCCccCC-e
Q psy4057 9 CVTNFVYVTHISS------TDLKKSLYAIFSQFGQIMDIVALKTL---KMRGQAFVIFKEIASATNALRSMQGFPFYD-K 78 (246)
Q Consensus 9 ~~~~~l~V~nl~~------~~~e~~l~~~F~~fG~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g-~ 78 (246)
..+++|||+|||. ++++++|+++|++||.|.+|.++++. +++|||||+|.+.++|.+|++.|||..+.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 4578999999999 99999999999999999999998764 688999999999999999999999999999 9
Q ss_pred eEEEEEccC
Q psy4057 79 PMRIQYSKT 87 (246)
Q Consensus 79 ~l~v~~a~~ 87 (246)
+|+|.++.+
T Consensus 84 ~l~V~~a~~ 92 (100)
T 3ns6_A 84 RLFLYTMKD 92 (100)
T ss_dssp BCEEEESHH
T ss_pred EEEEEECch
Confidence 999999854
No 72
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.81 E-value=1.1e-19 Score=130.81 Aligned_cols=80 Identities=19% Similarity=0.353 Sum_probs=72.3
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHH----HHHccCCCceEEEEeeCC--ccEEEEEeCCHHHHHHHHHHhCCCccCCCCce
Q psy4057 166 PEQPPNQILFLTNLPEETSEMMLS----MLFNQFPGFKEVRLVPNR--HDIAFVEFENEMQSAAAKLALHGFKITPTHAM 239 (246)
Q Consensus 166 ~~~~~~~~l~v~nL~~~~t~e~l~----~~f~~~G~i~~v~~~~~~--~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l 239 (246)
...+++++|||+|||..+++++|+ ++|++||.|.+|.+..+. +|||||+|.+.++|..|+..|||..|. |++|
T Consensus 24 ~~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~-gr~l 102 (127)
T 2a3j_A 24 PHTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQ-GNPL 102 (127)
T ss_dssp CCCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCT-TSCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeC-CCEE
Confidence 345678999999999999999876 699999999999987643 699999999999999999999999999 9999
Q ss_pred EEEeecC
Q psy4057 240 KISFAKK 246 (246)
Q Consensus 240 ~v~~ak~ 246 (246)
+|.||+.
T Consensus 103 ~V~~a~~ 109 (127)
T 2a3j_A 103 VITFSET 109 (127)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999973
No 73
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=7.1e-20 Score=125.43 Aligned_cols=82 Identities=23% Similarity=0.352 Sum_probs=76.1
Q ss_pred cCCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC---CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEE
Q psy4057 6 AHICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL---KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRI 82 (246)
Q Consensus 6 ~~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v 82 (246)
...+++++|||+|||.++++++|+++|++||.|.+|.++++. +++|||||+|.+.++|.+|++.|||..+.|++|+|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 89 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 356789999999999999999999999999999999998764 67899999999999999999999999999999999
Q ss_pred EEccC
Q psy4057 83 QYSKT 87 (246)
Q Consensus 83 ~~a~~ 87 (246)
.+++.
T Consensus 90 ~~a~~ 94 (95)
T 2cqc_A 90 SGPSS 94 (95)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 99853
No 74
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.1e-19 Score=126.17 Aligned_cols=83 Identities=28% Similarity=0.450 Sum_probs=77.1
Q ss_pred CCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC---CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEE
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL---KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~ 83 (246)
...++++|||+|||.++++++|+++|++||.|.+|.++++. +++|||||+|.+.++|.+|++.|||..+.|++|+|.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 45678999999999999999999999999999999998864 678999999999999999999999999999999999
Q ss_pred EccCCc
Q psy4057 84 YSKTDS 89 (246)
Q Consensus 84 ~a~~~~ 89 (246)
++....
T Consensus 88 ~a~~~~ 93 (102)
T 1x5s_A 88 QAGKSS 93 (102)
T ss_dssp EEECCC
T ss_pred ECCCCC
Confidence 997664
No 75
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=3.7e-20 Score=129.70 Aligned_cols=78 Identities=21% Similarity=0.289 Sum_probs=71.4
Q ss_pred CCCCCcEEEEcCCCCC-CCHHHHHHHHccCCCceEEEEeeCCccEEEEEeCCHHHHHHHHHHhCC--CccCCCCceEEEe
Q psy4057 167 EQPPNQILFLTNLPEE-TSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHG--FKITPTHAMKISF 243 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~-~t~e~l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g--~~i~~g~~l~v~~ 243 (246)
..+++++|||+|||.+ +|+++|+++|++||.|.+|++++.+ |||||+|.+.++|..|++.||+ ..|. |++|+|.|
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~k-g~aFVef~~~~~A~~Ai~~l~~~~~~l~-Gr~l~V~~ 98 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMK-SQAFIEMETREDAMAMVDHCLKKALWFQ-GRCVKVDL 98 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETTT-TEEEEECSSHHHHHHHHHHHHHSCCCSS-SSCCEEEE
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecCC-CEEEEEECCHHHHHHHHHHhccCCceEC-CEEEEEEE
Confidence 3567999999999998 9999999999999999999998765 8999999999999999999865 5688 99999999
Q ss_pred ecC
Q psy4057 244 AKK 246 (246)
Q Consensus 244 ak~ 246 (246)
|++
T Consensus 99 a~~ 101 (112)
T 1x4f_A 99 SEK 101 (112)
T ss_dssp ECS
T ss_pred Ccc
Confidence 974
No 76
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.2e-19 Score=126.30 Aligned_cols=84 Identities=21% Similarity=0.326 Sum_probs=77.6
Q ss_pred cCCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccC---CCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEE
Q psy4057 6 AHICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKT---LKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRI 82 (246)
Q Consensus 6 ~~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~---~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v 82 (246)
....++++|||+|||.++++++|+++|++||.|.+|.++.+ ++++|||||+|.+.++|.+|++.|||..+.|++|+|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2dnm_A 8 PDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRV 87 (103)
T ss_dssp SCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 45667899999999999999999999999999999999876 468899999999999999999999999999999999
Q ss_pred EEccCCc
Q psy4057 83 QYSKTDS 89 (246)
Q Consensus 83 ~~a~~~~ 89 (246)
.++....
T Consensus 88 ~~a~~~~ 94 (103)
T 2dnm_A 88 QVARYGR 94 (103)
T ss_dssp EECSSCC
T ss_pred EECCcCC
Confidence 9987553
No 77
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.9e-19 Score=124.26 Aligned_cols=83 Identities=19% Similarity=0.331 Sum_probs=76.7
Q ss_pred cCCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC---CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEE
Q psy4057 6 AHICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL---KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRI 82 (246)
Q Consensus 6 ~~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v 82 (246)
....++++|||+|||.++++++|+++|++||.|.+|.++++. +++|||||+|.+.++|.+|++ ||+..+.|++|.|
T Consensus 5 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V 83 (99)
T 2dgs_A 5 SSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEV 83 (99)
T ss_dssp CCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEE
Confidence 345788999999999999999999999999999999998764 689999999999999999999 9999999999999
Q ss_pred EEccCCc
Q psy4057 83 QYSKTDS 89 (246)
Q Consensus 83 ~~a~~~~ 89 (246)
.++..+.
T Consensus 84 ~~a~~~~ 90 (99)
T 2dgs_A 84 KRAEPRD 90 (99)
T ss_dssp EECCCCC
T ss_pred EECCCCc
Confidence 9997654
No 78
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.5e-19 Score=126.12 Aligned_cols=84 Identities=23% Similarity=0.347 Sum_probs=77.9
Q ss_pred cCCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC---CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEE
Q psy4057 6 AHICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL---KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRI 82 (246)
Q Consensus 6 ~~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v 82 (246)
....++++|||+|||.++++++|+++|++||.|.+|.++++. +++|||||+|.+.++|.+|++.|||..+.|++|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 356778999999999999999999999999999999998854 78899999999999999999999999999999999
Q ss_pred EEccCCc
Q psy4057 83 QYSKTDS 89 (246)
Q Consensus 83 ~~a~~~~ 89 (246)
.++....
T Consensus 90 ~~a~~~~ 96 (105)
T 1x5u_A 90 NKASAHN 96 (105)
T ss_dssp EETTTTS
T ss_pred EECCCCC
Confidence 9997664
No 79
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.2e-19 Score=124.93 Aligned_cols=79 Identities=27% Similarity=0.466 Sum_probs=74.2
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC---ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEE
Q psy4057 166 PEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR---HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKIS 242 (246)
Q Consensus 166 ~~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~---~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~ 242 (246)
....+.++|||+|||.++++++|+++|++||.|..|+++.++ +|||||+|.+.++|.+|+..|||..|. |++|+|.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~-g~~l~V~ 88 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKIL-GKEVKVN 88 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEET-TEEEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcC-CCeEEEE
Confidence 355679999999999999999999999999999999999964 589999999999999999999999999 9999999
Q ss_pred eec
Q psy4057 243 FAK 245 (246)
Q Consensus 243 ~ak 245 (246)
||+
T Consensus 89 ~a~ 91 (103)
T 2cqi_A 89 WAT 91 (103)
T ss_dssp ECC
T ss_pred ECC
Confidence 986
No 80
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.81 E-value=4.1e-19 Score=123.94 Aligned_cols=80 Identities=28% Similarity=0.405 Sum_probs=73.8
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC----ccEEEEEeCCHHHHHHHHHHhCCCccCCC--Cce
Q psy4057 166 PEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR----HDIAFVEFENEMQSAAAKLALHGFKITPT--HAM 239 (246)
Q Consensus 166 ~~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g~~i~~g--~~l 239 (246)
...+++++|||+|||.++++++|+++|++||.|..++++.++ +|||||+|.+.++|.+|++.|||..+.+| ++|
T Consensus 10 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 10 SRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp CSCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 345679999999999999999999999999999999999975 58999999999999999999999999833 999
Q ss_pred EEEeec
Q psy4057 240 KISFAK 245 (246)
Q Consensus 240 ~v~~ak 245 (246)
+|.||+
T Consensus 90 ~V~~a~ 95 (105)
T 2dnh_A 90 VVKFAD 95 (105)
T ss_dssp EEEESC
T ss_pred EEEECc
Confidence 999986
No 81
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=8.1e-20 Score=125.43 Aligned_cols=82 Identities=21% Similarity=0.434 Sum_probs=76.1
Q ss_pred CCCCcEEEecCCChhhhHHHHHHHhhccCCeeEE-EEccCC---CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEE
Q psy4057 8 ICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDI-VALKTL---KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83 (246)
Q Consensus 8 ~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v-~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~ 83 (246)
..++++|||+|||.++++++|+++|++||.|.++ .++++. +++|||||+|.+.++|.+|++.|||..+.|++|+|.
T Consensus 2 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 81 (96)
T 1x5t_A 2 SSGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS 81 (96)
T ss_dssp CSCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3578999999999999999999999999999999 888763 678999999999999999999999999999999999
Q ss_pred EccCCc
Q psy4057 84 YSKTDS 89 (246)
Q Consensus 84 ~a~~~~ 89 (246)
++....
T Consensus 82 ~a~~~~ 87 (96)
T 1x5t_A 82 YAFKKD 87 (96)
T ss_dssp ESCCCC
T ss_pred EecccC
Confidence 987654
No 82
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=3.6e-19 Score=123.13 Aligned_cols=79 Identities=28% Similarity=0.503 Sum_probs=74.0
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEE
Q psy4057 166 PEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKI 241 (246)
Q Consensus 166 ~~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v 241 (246)
....+.++|||+|||.++|+++|+++|++||.|.+++++.++ +|||||+|.+.++|..|++.|||..+. |++|+|
T Consensus 12 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~-g~~l~v 90 (100)
T 2do4_A 12 STSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIK-ENIIKV 90 (100)
T ss_dssp SSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESS-SCEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEEC-CEEEEE
Confidence 345678999999999999999999999999999999999876 489999999999999999999999999 999999
Q ss_pred Eeec
Q psy4057 242 SFAK 245 (246)
Q Consensus 242 ~~ak 245 (246)
.||+
T Consensus 91 ~~a~ 94 (100)
T 2do4_A 91 AISN 94 (100)
T ss_dssp EECC
T ss_pred EECC
Confidence 9986
No 83
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.81 E-value=1.5e-20 Score=127.84 Aligned_cols=74 Identities=23% Similarity=0.354 Sum_probs=68.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHccCC-CceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhC-CCccCCCCceEEEe
Q psy4057 171 NQILFLTNLPEETSEMMLSMLFNQFP-GFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALH-GFKITPTHAMKISF 243 (246)
Q Consensus 171 ~~~l~v~nL~~~~t~e~l~~~f~~~G-~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~-g~~i~~g~~l~v~~ 243 (246)
+.+|||+|||.++|+++|+++|++|| .|.+|++++++ +|||||+|.+.++|.+|++.|+ +..++ |++|+|.|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~-gr~i~V~~ 79 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNIL-GQKVSMHY 79 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEET-TEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEEC-CEEEEEEE
Confidence 57899999999999999999999999 89999999864 5899999999999999999885 56788 99999999
Q ss_pred ec
Q psy4057 244 AK 245 (246)
Q Consensus 244 ak 245 (246)
|+
T Consensus 80 a~ 81 (91)
T 2lxi_A 80 SD 81 (91)
T ss_dssp CC
T ss_pred cC
Confidence 86
No 84
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.81 E-value=1.8e-20 Score=136.74 Aligned_cols=78 Identities=22% Similarity=0.317 Sum_probs=72.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEE
Q psy4057 168 QPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKIS 242 (246)
Q Consensus 168 ~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~ 242 (246)
..+.++|||+|||.++|+++|+++|+.||.|..|+++.++ +|||||+|.+.++|.+|+..|||..|. |++|+|.
T Consensus 44 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~-g~~l~V~ 122 (135)
T 2lea_A 44 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLD-GRELRVQ 122 (135)
T ss_dssp GGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSS-SSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC-CEEEEEE
Confidence 3458899999999999999999999999999999998864 579999999999999999999999999 9999999
Q ss_pred eecC
Q psy4057 243 FAKK 246 (246)
Q Consensus 243 ~ak~ 246 (246)
||+.
T Consensus 123 ~a~~ 126 (135)
T 2lea_A 123 MARY 126 (135)
T ss_dssp ECCC
T ss_pred ECCC
Confidence 9973
No 85
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.81 E-value=1.1e-19 Score=124.46 Aligned_cols=80 Identities=23% Similarity=0.388 Sum_probs=75.1
Q ss_pred CCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC--CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEE
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL--KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQY 84 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~--~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 84 (246)
..+++++|||+|||.++++++|+++|++||.|.+|.+.++. +++|||||+|.+.++|.+|++.|||..+.|++|+|.+
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 45678999999999999999999999999999999998764 6789999999999999999999999999999999999
Q ss_pred cc
Q psy4057 85 SK 86 (246)
Q Consensus 85 a~ 86 (246)
++
T Consensus 92 a~ 93 (95)
T 2ywk_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 86
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.81 E-value=3e-19 Score=125.23 Aligned_cols=80 Identities=20% Similarity=0.359 Sum_probs=74.3
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceE
Q psy4057 166 PEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMK 240 (246)
Q Consensus 166 ~~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~ 240 (246)
...+++++|||+|||.++++++|+++|++||.|..++++.++ +|||||+|.+.++|..|++.|||..|. |++|+
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~-g~~l~ 99 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELA-GRPMK 99 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSS-SSCCE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC-CEEEE
Confidence 345678999999999999999999999999999999999864 589999999999999999999999999 99999
Q ss_pred EEeecC
Q psy4057 241 ISFAKK 246 (246)
Q Consensus 241 v~~ak~ 246 (246)
|+||+.
T Consensus 100 V~~a~~ 105 (108)
T 2jrs_A 100 VGHVTE 105 (108)
T ss_dssp EECSCS
T ss_pred EEEccc
Confidence 999874
No 87
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=3e-19 Score=124.63 Aligned_cols=79 Identities=23% Similarity=0.301 Sum_probs=73.9
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceE
Q psy4057 166 PEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMK 240 (246)
Q Consensus 166 ~~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~ 240 (246)
....+.++|||+|||.++++++|+++|++||.|.+++++.++ +|||||+|.+.++|.+|+..|||..|. |++|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~-g~~l~ 88 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLY-GKPIR 88 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCS-SCBCE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeEC-CeEEE
Confidence 355678999999999999999999999999999999999875 479999999999999999999999999 99999
Q ss_pred EEeec
Q psy4057 241 ISFAK 245 (246)
Q Consensus 241 v~~ak 245 (246)
|.||+
T Consensus 89 v~~a~ 93 (105)
T 1x5u_A 89 VNKAS 93 (105)
T ss_dssp EEETT
T ss_pred EEECC
Confidence 99986
No 88
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.3e-19 Score=126.76 Aligned_cols=82 Identities=15% Similarity=0.311 Sum_probs=75.6
Q ss_pred CCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccC---CCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEE
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKT---LKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~---~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~ 83 (246)
...++++|||+|||.++++++|+++|++||.|.+|.+..+ ++++|||||+|.+.++|.+|++.|||..+.|++|.|.
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 3456789999999999999999999999999999999876 4678999999999999999999999999999999999
Q ss_pred EccCC
Q psy4057 84 YSKTD 88 (246)
Q Consensus 84 ~a~~~ 88 (246)
++..+
T Consensus 99 ~a~~~ 103 (106)
T 1p27_B 99 WCFVR 103 (106)
T ss_dssp ESEES
T ss_pred eecCC
Confidence 98654
No 89
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.81 E-value=2.3e-19 Score=119.71 Aligned_cols=75 Identities=20% Similarity=0.371 Sum_probs=70.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEeec
Q psy4057 171 NQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAK 245 (246)
Q Consensus 171 ~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~ak 245 (246)
+.+|||+|||.++++++|+++|++||.|.+++++.++ +|||||+|.+.++|..|+..|||..++ |++|+|.||+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~-g~~l~v~~a~ 79 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLN-GRPLRINWAA 79 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEET-TEECEEEECC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeC-CcEEEEEecC
Confidence 4689999999999999999999999999999999874 589999999999999999999999999 9999999997
Q ss_pred C
Q psy4057 246 K 246 (246)
Q Consensus 246 ~ 246 (246)
.
T Consensus 80 ~ 80 (83)
T 3md1_A 80 K 80 (83)
T ss_dssp C
T ss_pred c
Confidence 4
No 90
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=3.4e-19 Score=124.74 Aligned_cols=80 Identities=23% Similarity=0.405 Sum_probs=74.4
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC------ccEEEEEeCCHHHHHHHHHHh-CCCccCCCCc
Q psy4057 166 PEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR------HDIAFVEFENEMQSAAAKLAL-HGFKITPTHA 238 (246)
Q Consensus 166 ~~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~------~g~afV~f~~~~~A~~Al~~l-~g~~i~~g~~ 238 (246)
...++.++|||+|||..+++++|+++|++||.|..|+++.+. +|||||+|.+.++|.+|+..| ||..|. |++
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~-g~~ 88 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLY-GRR 88 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSS-SCB
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeEC-CCE
Confidence 345679999999999999999999999999999999999883 689999999999999999999 999999 999
Q ss_pred eEEEeecC
Q psy4057 239 MKISFAKK 246 (246)
Q Consensus 239 l~v~~ak~ 246 (246)
|+|.||+.
T Consensus 89 l~v~~a~~ 96 (107)
T 2cph_A 89 LVLEWADS 96 (107)
T ss_dssp CEEEECCC
T ss_pred EEEEeCCC
Confidence 99999873
No 91
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.5e-19 Score=120.67 Aligned_cols=80 Identities=16% Similarity=0.267 Sum_probs=72.0
Q ss_pred CCCCCcE-EEecCCChhhhHHH----HHHHhhcc-CCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeE
Q psy4057 7 HICVTNF-VYVTHISSTDLKKS----LYAIFSQF-GQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPM 80 (246)
Q Consensus 7 ~~~~~~~-l~V~nl~~~~~e~~----l~~~F~~f-G~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l 80 (246)
.++|+.+ |||+|||..+++++ |+++|++| |+|.+| ..|+|||.|.+.++|++|++.|||..+.||+|
T Consensus 4 ~~~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tgG~AfV~F~~~esA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 4 GSSGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TGCSAILRFINQDSAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp SCCCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CTTCEEEEESSHHHHHHHHHHHTTCCSSSSCC
T ss_pred CCCCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ecCEEEEEECCHHHHHHHHHHhcCCccCCceE
Confidence 4678888 99999999999887 66899999 599998 23999999999999999999999999999999
Q ss_pred EEEEccCCccccc
Q psy4057 81 RIQYSKTDSDVIS 93 (246)
Q Consensus 81 ~v~~a~~~~~~~~ 93 (246)
+|.||+.+++...
T Consensus 77 ~v~~A~~~sd~~~ 89 (96)
T 2diu_A 77 IVSFTPKNRELCE 89 (96)
T ss_dssp EEESSCCSCCCCC
T ss_pred EEEecCCCcceeE
Confidence 9999998877654
No 92
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.81 E-value=2.3e-19 Score=127.94 Aligned_cols=79 Identities=27% Similarity=0.452 Sum_probs=73.3
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceE
Q psy4057 166 PEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMK 240 (246)
Q Consensus 166 ~~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~ 240 (246)
...++.++|||+|||.++++++|+++|++||.|.+++++.++ +|||||+|.+.++|..|++.|||..++ |++|+
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~l~ 113 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVG-TKRLK 113 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEET-TEECC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEEC-CEEEE
Confidence 455678999999999999999999999999999999999864 589999999999999999999999999 99999
Q ss_pred EEeec
Q psy4057 241 ISFAK 245 (246)
Q Consensus 241 v~~ak 245 (246)
|+|||
T Consensus 114 V~~ak 118 (118)
T 2khc_A 114 VQLKK 118 (118)
T ss_dssp EEEC-
T ss_pred EEecC
Confidence 99997
No 93
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.1e-19 Score=127.66 Aligned_cols=82 Identities=21% Similarity=0.311 Sum_probs=76.3
Q ss_pred CCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC-CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEc
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL-KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYS 85 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~-~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a 85 (246)
...++++|||+|||.++++++|+++|++||.|.+|.+.++. .++|||||+|.+.++|.+|++.|||..+.|++|+|.++
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 104 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 104 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 45678999999999999999999999999999999998765 67899999999999999999999999999999999998
Q ss_pred cCC
Q psy4057 86 KTD 88 (246)
Q Consensus 86 ~~~ 88 (246)
..+
T Consensus 105 ~~~ 107 (109)
T 2err_A 105 TAR 107 (109)
T ss_dssp CCS
T ss_pred CCC
Confidence 654
No 94
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.81 E-value=1.3e-19 Score=125.07 Aligned_cols=82 Identities=23% Similarity=0.346 Sum_probs=75.8
Q ss_pred ccCCCCCcEEEecCCChhhhHHHHHHHhhccCCeeE--------EEEccC---CCCccEEEEEEcCHHHHHHHHHHhcCC
Q psy4057 5 LAHICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMD--------IVALKT---LKMRGQAFVIFKEIASATNALRSMQGF 73 (246)
Q Consensus 5 ~~~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~--------v~~~~~---~~~kg~aFV~f~~~~~A~~Ai~~lng~ 73 (246)
....++.++|||+|||.++++++|+++|++||.|.+ |.+..+ ++++|||||+|.+.++|.+|++.|||.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 7 HHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 346678999999999999999999999999999999 888876 377899999999999999999999999
Q ss_pred ccCCeeEEEEEcc
Q psy4057 74 PFYDKPMRIQYSK 86 (246)
Q Consensus 74 ~~~g~~l~v~~a~ 86 (246)
.+.|++|+|.+|+
T Consensus 87 ~~~g~~l~V~~A~ 99 (99)
T 2la6_A 87 EFSGNPIKVSFAT 99 (99)
T ss_dssp BSSSSBCEEEECC
T ss_pred EeCCcEEEEEecC
Confidence 9999999999973
No 95
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.81 E-value=1.7e-19 Score=122.83 Aligned_cols=83 Identities=18% Similarity=0.206 Sum_probs=76.9
Q ss_pred CCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccC-CCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEc
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKT-LKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYS 85 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~-~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a 85 (246)
..+++++|||+|||.++++++|+++|++||.|.+|.+.++ ++++|||||+|.+.++|.+|++.|||..+.|++|+|.++
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 4 GSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 4578899999999999999999999999999999998874 378899999999999999999999999999999999998
Q ss_pred cCCc
Q psy4057 86 KTDS 89 (246)
Q Consensus 86 ~~~~ 89 (246)
....
T Consensus 84 ~~~~ 87 (92)
T 2dgv_A 84 RNAS 87 (92)
T ss_dssp SCCS
T ss_pred CCCC
Confidence 7654
No 96
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=3.7e-19 Score=121.86 Aligned_cols=77 Identities=19% Similarity=0.371 Sum_probs=72.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEe
Q psy4057 169 PPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISF 243 (246)
Q Consensus 169 ~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~ 243 (246)
+++++|||+|||.++++++|+++|++||.|..++++.++ +|||||+|.+.++|..|++.|||..+. |++|+|.|
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~-g~~l~V~~ 81 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELA-GRPMRVGH 81 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSS-SSCCEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeC-CcEEEEEE
Confidence 468999999999999999999999999999999999874 579999999999999999999999999 99999999
Q ss_pred ecC
Q psy4057 244 AKK 246 (246)
Q Consensus 244 ak~ 246 (246)
|+.
T Consensus 82 a~~ 84 (95)
T 2dnz_A 82 VTE 84 (95)
T ss_dssp SSC
T ss_pred ccc
Confidence 863
No 97
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=4.8e-20 Score=129.13 Aligned_cols=81 Identities=11% Similarity=0.252 Sum_probs=73.6
Q ss_pred CCCCCcEEEecCCChh-hhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcC--CccCCeeEEEE
Q psy4057 7 HICVTNFVYVTHISST-DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQG--FPFYDKPMRIQ 83 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~-~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng--~~~~g~~l~v~ 83 (246)
..+|+++|||+|||.+ +++++|+++|++||.|.+|.+++ +||||||+|.+.++|..|++.||+ ..+.|++|+|.
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~---~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 97 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR---MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVD 97 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET---TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEE
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec---CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 4678999999999998 99999999999999999999975 689999999999999999998864 66999999999
Q ss_pred EccCCcc
Q psy4057 84 YSKTDSD 90 (246)
Q Consensus 84 ~a~~~~~ 90 (246)
++.....
T Consensus 98 ~a~~~~~ 104 (112)
T 1x4f_A 98 LSEKYKK 104 (112)
T ss_dssp EECSCSS
T ss_pred ECccccc
Confidence 9976544
No 98
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=2.7e-19 Score=125.26 Aligned_cols=84 Identities=19% Similarity=0.342 Sum_probs=77.5
Q ss_pred CCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccC----CCCccEEEEEEcCHHHHHHHHHHh-cCCccCCeeEE
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKT----LKMRGQAFVIFKEIASATNALRSM-QGFPFYDKPMR 81 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~----~~~kg~aFV~f~~~~~A~~Ai~~l-ng~~~~g~~l~ 81 (246)
...++++|||+|||.++++++|+++|++||.|.+|.++++ ++++|||||+|.+.++|.+|++.| |+..+.|++|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 4567899999999999999999999999999999999876 377899999999999999999999 99999999999
Q ss_pred EEEccCCcc
Q psy4057 82 IQYSKTDSD 90 (246)
Q Consensus 82 v~~a~~~~~ 90 (246)
|.++..+..
T Consensus 91 v~~a~~~~~ 99 (107)
T 2cph_A 91 LEWADSEVT 99 (107)
T ss_dssp EEECCCCCC
T ss_pred EEeCCCCCC
Confidence 999976643
No 99
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.80 E-value=2.1e-19 Score=123.42 Aligned_cols=76 Identities=20% Similarity=0.432 Sum_probs=71.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEee
Q psy4057 170 PNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFA 244 (246)
Q Consensus 170 ~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~a 244 (246)
|+++|||+|||.++++++|+++|++||.|.+++++.++ +|||||+|.+.++|..|++.|||..++ |+.|+|.||
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~-g~~l~V~~a 79 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLG-SRFLKCGYS 79 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEET-TEECEEEEC
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeEC-CeEEEEEEc
Confidence 57899999999999999999999999999999999874 589999999999999999999999999 999999998
Q ss_pred cC
Q psy4057 245 KK 246 (246)
Q Consensus 245 k~ 246 (246)
+.
T Consensus 80 ~~ 81 (96)
T 2x1f_A 80 SN 81 (96)
T ss_dssp SC
T ss_pred CC
Confidence 73
No 100
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.80 E-value=2.9e-19 Score=126.82 Aligned_cols=81 Identities=23% Similarity=0.463 Sum_probs=74.8
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCce
Q psy4057 165 VPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHAM 239 (246)
Q Consensus 165 ~~~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l 239 (246)
....++.++|||+|||.++++++|+++|++||.|.+++++.++ +|||||+|.+.++|.+|++.|||..|. |++|
T Consensus 19 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~-g~~l 97 (115)
T 2cpz_A 19 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIG-MKRL 97 (115)
T ss_dssp CCCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEET-TEEC
T ss_pred CcCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEEC-CEEE
Confidence 3455678999999999999999999999999999999999876 479999999999999999999999999 9999
Q ss_pred EEEeecC
Q psy4057 240 KISFAKK 246 (246)
Q Consensus 240 ~v~~ak~ 246 (246)
+|.||+.
T Consensus 98 ~V~~a~~ 104 (115)
T 2cpz_A 98 KVQLKRS 104 (115)
T ss_dssp EEECCCC
T ss_pred EEEEcCC
Confidence 9999873
No 101
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=1.1e-19 Score=128.19 Aligned_cols=75 Identities=21% Similarity=0.248 Sum_probs=71.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCCccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEeecC
Q psy4057 170 PNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246 (246)
Q Consensus 170 ~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~ak~ 246 (246)
.+++|||+|||.++++++|+++|++||.|.+|.+++.+ |||||+|.+.++|..|+..|||+.++ |++|+|.||+.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-g~afV~f~~~~~A~~Ai~~l~g~~~~-g~~l~V~~a~~ 83 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGG-ITAIVEFLEPLEARKAFRHLAYSKFH-HVPLYLEWAPI 83 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSSS-SCEEEEESCHHHHHHHHHHHTTCBSS-SSBCEEEEEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCC-CEEEEEeCCHHHHHHHHHHhCCCEEC-CeEEEEEECCC
Confidence 47899999999999999999999999999999998755 89999999999999999999999999 99999999974
No 102
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.2e-19 Score=123.81 Aligned_cols=79 Identities=27% Similarity=0.418 Sum_probs=73.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEE
Q psy4057 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKI 241 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v 241 (246)
..++.++|||+|||.++++++|+++|++||.|..++++.++ +|||||+|.+.++|..|++.|||..|. |++|+|
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~l~v 86 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVD-GRQIRV 86 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTT-SCCCEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC-CeEEEE
Confidence 45578999999999999999999999999999999999864 579999999999999999999999999 999999
Q ss_pred EeecC
Q psy4057 242 SFAKK 246 (246)
Q Consensus 242 ~~ak~ 246 (246)
.||+.
T Consensus 87 ~~a~~ 91 (102)
T 1x5s_A 87 DQAGK 91 (102)
T ss_dssp EEEEC
T ss_pred EECCC
Confidence 99974
No 103
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=5.6e-19 Score=122.82 Aligned_cols=79 Identities=24% Similarity=0.405 Sum_probs=74.0
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC---ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEE
Q psy4057 166 PEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR---HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKIS 242 (246)
Q Consensus 166 ~~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~---~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~ 242 (246)
....+.++|||+|||.++++++|+++|++||.|.+|+++.+. +|||||+|.+.++|.+|+..|||..|. |+.|+|.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~-g~~l~v~ 88 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVE-GRKIEVN 88 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEET-TEECEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEEC-CEEEEEE
Confidence 345578999999999999999999999999999999999875 589999999999999999999999999 9999999
Q ss_pred eec
Q psy4057 243 FAK 245 (246)
Q Consensus 243 ~ak 245 (246)
||+
T Consensus 89 ~a~ 91 (103)
T 2cq3_A 89 NAT 91 (103)
T ss_dssp ECC
T ss_pred Ecc
Confidence 986
No 104
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.80 E-value=2.3e-19 Score=125.22 Aligned_cols=83 Identities=19% Similarity=0.352 Sum_probs=76.4
Q ss_pred CCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC--CCccEEEEEEcCHHHHHHHHHHhcCCccCC---eeEE
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL--KMRGQAFVIFKEIASATNALRSMQGFPFYD---KPMR 81 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~--~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g---~~l~ 81 (246)
..+++++|||+|||.++++++|+++|++||.|.+|.++++. +++|||||+|.+.++|.+|++.|||..+.| ++|+
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 34678999999999999999999999999999999998764 678999999999999999999999999988 9999
Q ss_pred EEEccCCc
Q psy4057 82 IQYSKTDS 89 (246)
Q Consensus 82 v~~a~~~~ 89 (246)
|.++....
T Consensus 91 V~~a~~~~ 98 (105)
T 2dnh_A 91 VKFADTDK 98 (105)
T ss_dssp EEESCSSC
T ss_pred EEECccCc
Confidence 99997654
No 105
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.3e-19 Score=125.81 Aligned_cols=83 Identities=28% Similarity=0.367 Sum_probs=77.2
Q ss_pred CCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccC---CCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEE
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKT---LKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~---~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~ 83 (246)
...++++|||+|||.++++++|+++|++||.|.+|.++++ ++++|||||+|.+.++|.+|++.|||..+.|++|+|.
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 4568899999999999999999999999999999999876 3689999999999999999999999999999999999
Q ss_pred EccCCc
Q psy4057 84 YSKTDS 89 (246)
Q Consensus 84 ~a~~~~ 89 (246)
++....
T Consensus 88 ~a~~~~ 93 (102)
T 2cqb_A 88 LAKPMR 93 (102)
T ss_dssp ECCCCC
T ss_pred eCCCCC
Confidence 987654
No 106
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.80 E-value=2.7e-19 Score=123.02 Aligned_cols=77 Identities=16% Similarity=0.207 Sum_probs=71.0
Q ss_pred CCCCCCcEEEEcCCCC-CCCHHHHHHHHccCCCceEEEEeeCCccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEee
Q psy4057 166 PEQPPNQILFLTNLPE-ETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFA 244 (246)
Q Consensus 166 ~~~~~~~~l~v~nL~~-~~t~e~l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~a 244 (246)
...+++++|||+|||. ++++++|+++|+.||.|.++++. +|||||+|.+.++|..|+..|||..++ |+.|+|+||
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~---~g~afV~f~~~~~A~~Ai~~l~g~~~~-g~~l~V~~a 92 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK---NAFGFIQFDNPQSVRDAIEXESQEMNF-GKKLILEVS 92 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC---SSEEEEEESSHHHHHHHHHHHTTSEET-TEECEEEEC
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe---CCEEEEEECCHHHHHHHHHHcCCCEEC-CEEEEEEec
Confidence 4566799999999998 99999999999999999999985 589999999999999999999999999 999999998
Q ss_pred cC
Q psy4057 245 KK 246 (246)
Q Consensus 245 k~ 246 (246)
+.
T Consensus 93 ~~ 94 (97)
T 2xnq_A 93 SS 94 (97)
T ss_dssp CC
T ss_pred CC
Confidence 73
No 107
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.2e-19 Score=125.95 Aligned_cols=79 Identities=20% Similarity=0.376 Sum_probs=73.7
Q ss_pred CCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC--CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEE
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL--KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQY 84 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~--~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 84 (246)
...+.++|||+|||.++++++|+++|++||.|.+|.++++. +++|||||+|.+.++|.+|+. ++|..+.|++|.|.+
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILF 85 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEE
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEE
Confidence 45667999999999999999999999999999999998764 789999999999999999999 999999999999998
Q ss_pred cc
Q psy4057 85 SK 86 (246)
Q Consensus 85 a~ 86 (246)
+.
T Consensus 86 ~~ 87 (103)
T 1s79_A 86 KD 87 (103)
T ss_dssp HH
T ss_pred ch
Confidence 64
No 108
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.80 E-value=1.9e-19 Score=126.28 Aligned_cols=77 Identities=29% Similarity=0.499 Sum_probs=71.2
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCCccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEee
Q psy4057 165 VPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFA 244 (246)
Q Consensus 165 ~~~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~a 244 (246)
.....++++|||+|||.++|+++|+++|++||.|..+++. +|||||+|.+.++|..|+..|||..++ |+.|+|.||
T Consensus 25 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~---kg~afV~f~~~~~A~~Ai~~l~g~~~~-g~~l~V~~a 100 (108)
T 2jvo_A 25 QEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL---NGFAFVEFEEAESAAKAIEEVHGKSFA-NQPLEVVYS 100 (108)
T ss_dssp ---CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE---TTEEEEECSSHHHHHHHHHHHTTCEET-TEECEEESC
T ss_pred cCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEECCHHHHHHHHHHcCCCEEC-CeEEEEEEe
Confidence 3456679999999999999999999999999999999998 589999999999999999999999999 999999998
Q ss_pred c
Q psy4057 245 K 245 (246)
Q Consensus 245 k 245 (246)
+
T Consensus 101 ~ 101 (108)
T 2jvo_A 101 K 101 (108)
T ss_dssp S
T ss_pred c
Confidence 6
No 109
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=5.6e-19 Score=121.92 Aligned_cols=77 Identities=21% Similarity=0.355 Sum_probs=72.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEE
Q psy4057 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKI 241 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v 241 (246)
...+.++|||+|||.++++++|+++|++||.|..++++.++ +|||||+|.+.++|.+|++ |||..+. |++|+|
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~-g~~l~V 83 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIM-GKKVEV 83 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSS-SCBCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEEC-CeEEEE
Confidence 45578999999999999999999999999999999999864 5899999999999999999 9999999 999999
Q ss_pred Eeec
Q psy4057 242 SFAK 245 (246)
Q Consensus 242 ~~ak 245 (246)
.||+
T Consensus 84 ~~a~ 87 (99)
T 2dgs_A 84 KRAE 87 (99)
T ss_dssp EECC
T ss_pred EECC
Confidence 9986
No 110
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.9e-19 Score=123.56 Aligned_cols=78 Identities=24% Similarity=0.270 Sum_probs=72.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHH----HHHccCCCceEEEEeeCC--ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEE
Q psy4057 168 QPPNQILFLTNLPEETSEMMLS----MLFNQFPGFKEVRLVPNR--HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKI 241 (246)
Q Consensus 168 ~~~~~~l~v~nL~~~~t~e~l~----~~f~~~G~i~~v~~~~~~--~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v 241 (246)
....++|||+|||.++++++|+ ++|++||.|.+++++.++ +|||||+|.+.++|.+|++.|||..++ |++|+|
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~-gr~l~V 84 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIG-SKKILV 84 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEET-TEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEEC-CeEEEE
Confidence 3457899999999999999999 999999999999999775 689999999999999999999999999 999999
Q ss_pred EeecC
Q psy4057 242 SFAKK 246 (246)
Q Consensus 242 ~~ak~ 246 (246)
+||+.
T Consensus 85 ~~a~~ 89 (96)
T 2dgx_A 85 SLATG 89 (96)
T ss_dssp EECCC
T ss_pred EEcCC
Confidence 99973
No 111
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.7e-19 Score=126.76 Aligned_cols=80 Identities=24% Similarity=0.400 Sum_probs=74.3
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC---ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEE
Q psy4057 166 PEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR---HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKIS 242 (246)
Q Consensus 166 ~~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~---~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~ 242 (246)
......++|||+|||.++++++|+++|++||.|.+++++.+. +|||||+|.+.++|.+|+..|||..++ |++|+|+
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~-g~~l~V~ 102 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVE-GRKIEVN 102 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEET-TEECEEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEEC-CEEEEEE
Confidence 345578999999999999999999999999999999999864 689999999999999999999999999 9999999
Q ss_pred eecC
Q psy4057 243 FAKK 246 (246)
Q Consensus 243 ~ak~ 246 (246)
||+.
T Consensus 103 ~a~~ 106 (109)
T 2err_A 103 NATA 106 (109)
T ss_dssp ECCC
T ss_pred ECCC
Confidence 9873
No 112
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=2.5e-19 Score=123.23 Aligned_cols=81 Identities=23% Similarity=0.433 Sum_probs=75.2
Q ss_pred cCCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccC--CeeEEEE
Q psy4057 6 AHICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFY--DKPMRIQ 83 (246)
Q Consensus 6 ~~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~--g~~l~v~ 83 (246)
...+++++|||+|||.++++++|+++|++||.|.+|.+.++ +|||||+|.+.++|.+|++.|||..+. |++|+|.
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 12 GKANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG---DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS---SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC---CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 45678899999999999999999999999999999988764 899999999999999999999999999 9999999
Q ss_pred EccCCc
Q psy4057 84 YSKTDS 89 (246)
Q Consensus 84 ~a~~~~ 89 (246)
++..+.
T Consensus 89 ~a~~~~ 94 (97)
T 1why_A 89 FAKSGP 94 (97)
T ss_dssp ECCCCC
T ss_pred ECCCCC
Confidence 987653
No 113
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=1.3e-19 Score=124.95 Aligned_cols=82 Identities=20% Similarity=0.323 Sum_probs=75.6
Q ss_pred CCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC------CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEE
Q psy4057 8 ICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL------KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMR 81 (246)
Q Consensus 8 ~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~ 81 (246)
.+++++|||+|||.++++++|+++|++||.|..|.+.++. +++|||||+|.+.++|.+|++.|||..+.|++|+
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (98)
T 2cpf_A 2 SSGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLE 81 (98)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 3678999999999999999999999999999999998643 5689999999999999999999999999999999
Q ss_pred EEEccCCc
Q psy4057 82 IQYSKTDS 89 (246)
Q Consensus 82 v~~a~~~~ 89 (246)
|.++....
T Consensus 82 V~~a~~~~ 89 (98)
T 2cpf_A 82 VRISERAT 89 (98)
T ss_dssp EECSSCSS
T ss_pred EEEccCCC
Confidence 99987654
No 114
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=5.8e-19 Score=121.39 Aligned_cols=78 Identities=23% Similarity=0.428 Sum_probs=73.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCCccEEEEEeCCHHHHHHHHHHhCCCccCC-CCceEEEeec
Q psy4057 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITP-THAMKISFAK 245 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~~-g~~l~v~~ak 245 (246)
..+++++|||+|||.++++++|+++|++||.|.++++..+ +|||||+|.+.++|..|++.|||..+.+ |++|+|.||+
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~ 91 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAK 91 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECC
Confidence 4567899999999999999999999999999999999988 5899999999999999999999999986 7999999987
No 115
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.3e-19 Score=126.03 Aligned_cols=83 Identities=23% Similarity=0.388 Sum_probs=77.0
Q ss_pred CCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC---CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEE
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL---KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~ 83 (246)
...++++|||+|||.++++++|+++|++||.|.+|.++++. +++|||||+|.+.++|.+|++.|||..+.|++|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45678999999999999999999999999999999998763 778999999999999999999999999999999999
Q ss_pred EccCCc
Q psy4057 84 YSKTDS 89 (246)
Q Consensus 84 ~a~~~~ 89 (246)
++..+.
T Consensus 91 ~a~~~~ 96 (103)
T 2cq0_A 91 WAKPST 96 (103)
T ss_dssp ESSCCC
T ss_pred ECCCCC
Confidence 987654
No 116
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=4.3e-19 Score=120.32 Aligned_cols=76 Identities=25% Similarity=0.427 Sum_probs=71.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCCccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEeecC
Q psy4057 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~ak~ 246 (246)
..++.++|||+|||.++++++|+++|++||.|.++++. +|||||+|.+.++|..|+..|||..+. |++|+|.||+.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~l~v~~a~~ 79 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII---KNYGFVHIEDKTAAEDAIRNLHHYKLH-GVNINVEASKN 79 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE---TTEEEEEESSHHHHHHHHHHHTTCBCS-SCBCEEECSSC
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhcCCccC-CcEEEEEECCC
Confidence 34578999999999999999999999999999999998 589999999999999999999999999 99999999863
No 117
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.80 E-value=2.4e-19 Score=122.82 Aligned_cols=78 Identities=22% Similarity=0.348 Sum_probs=73.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEE
Q psy4057 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKIS 242 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~ 242 (246)
..++.++|||+|||.++++++|+++|++||.|.+++++.++ +|||||+|.+.++|.+|++.|||..++ |++|+|.
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~-g~~l~V~ 90 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLY-GRPINVS 90 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEET-TEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEEC-CCEEEEE
Confidence 44578999999999999999999999999999999999975 589999999999999999999999999 9999999
Q ss_pred eec
Q psy4057 243 FAK 245 (246)
Q Consensus 243 ~ak 245 (246)
||+
T Consensus 91 ~a~ 93 (95)
T 2ywk_A 91 GPS 93 (95)
T ss_dssp CCC
T ss_pred EcC
Confidence 987
No 118
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=3.5e-19 Score=122.93 Aligned_cols=79 Identities=20% Similarity=0.242 Sum_probs=73.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEE
Q psy4057 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKI 241 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v 241 (246)
...++++|||+|||.++|+++|+++|++||.|.+++++.++ +|||||+|.+.++|..|+..|||..+. |++|+|
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~-g~~l~V 82 (99)
T 1whw_A 4 GSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQ-GRMLHV 82 (99)
T ss_dssp CCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESS-SCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEEC-CcEEEE
Confidence 34578999999999999999999999999999999998865 589999999999999999999999999 999999
Q ss_pred EeecC
Q psy4057 242 SFAKK 246 (246)
Q Consensus 242 ~~ak~ 246 (246)
.||+.
T Consensus 83 ~~a~~ 87 (99)
T 1whw_A 83 LPSTI 87 (99)
T ss_dssp EECCC
T ss_pred EEcCC
Confidence 99873
No 119
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.80 E-value=4.2e-19 Score=125.98 Aligned_cols=83 Identities=25% Similarity=0.372 Sum_probs=77.0
Q ss_pred CCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC---CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEE
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL---KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~ 83 (246)
...++++|||+|||.++++++|+++|++||.|.+|.++++. +++|||||+|.+.++|++|++.|||..+.|++|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 45678999999999999999999999999999999998763 678999999999999999999999999999999999
Q ss_pred EccCCc
Q psy4057 84 YSKTDS 89 (246)
Q Consensus 84 ~a~~~~ 89 (246)
++....
T Consensus 91 ~a~~~~ 96 (115)
T 2dgo_A 91 WATRKP 96 (115)
T ss_dssp ESSCCC
T ss_pred EccCCC
Confidence 997654
No 120
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.80 E-value=4.7e-19 Score=125.70 Aligned_cols=80 Identities=18% Similarity=0.311 Sum_probs=74.6
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceE
Q psy4057 166 PEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMK 240 (246)
Q Consensus 166 ~~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~ 240 (246)
....+.++|||+|||.++++++|+++|+.||.|..|+++.+. +|||||+|.+.++|.+|++.|||..|. |+.|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~-g~~l~ 88 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLG-GRQIR 88 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEET-TEECE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC-CEEEE
Confidence 345579999999999999999999999999999999999875 589999999999999999999999999 99999
Q ss_pred EEeecC
Q psy4057 241 ISFAKK 246 (246)
Q Consensus 241 v~~ak~ 246 (246)
|.||+.
T Consensus 89 V~~a~~ 94 (115)
T 2dgo_A 89 TNWATR 94 (115)
T ss_dssp EEESSC
T ss_pred EEEccC
Confidence 999873
No 121
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=6.4e-19 Score=123.81 Aligned_cols=79 Identities=20% Similarity=0.445 Sum_probs=73.5
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC--ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEe
Q psy4057 166 PEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR--HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISF 243 (246)
Q Consensus 166 ~~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~--~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~ 243 (246)
....+.++|||+|||.++|+++|+++|++||.|..+++..+. +|||||+|.+.++|..|++.|||..|. |+.|+|.|
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~l~V~~ 95 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYD-GYRLRVEF 95 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEET-TEECEEEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEEC-CeEEEEEE
Confidence 345578999999999999999999999999999999998765 589999999999999999999999999 99999999
Q ss_pred ec
Q psy4057 244 AK 245 (246)
Q Consensus 244 ak 245 (246)
|+
T Consensus 96 a~ 97 (109)
T 1x4a_A 96 PR 97 (109)
T ss_dssp CC
T ss_pred cc
Confidence 86
No 122
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=3.9e-19 Score=123.63 Aligned_cols=78 Identities=21% Similarity=0.325 Sum_probs=73.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEE
Q psy4057 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKI 241 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v 241 (246)
...+.++|||+|||.++++++|+++|++||.|..+.++.++ +|||||+|.+.++|.+|+..|||..+. |+.|+|
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~l~V 87 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELD-GRELRV 87 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBT-TBCCEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEEC-CcEEEE
Confidence 45578999999999999999999999999999999999864 589999999999999999999999999 999999
Q ss_pred Eeec
Q psy4057 242 SFAK 245 (246)
Q Consensus 242 ~~ak 245 (246)
.||+
T Consensus 88 ~~a~ 91 (103)
T 2dnm_A 88 QVAR 91 (103)
T ss_dssp EECS
T ss_pred EECC
Confidence 9987
No 123
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.80 E-value=1.6e-19 Score=128.20 Aligned_cols=83 Identities=19% Similarity=0.309 Sum_probs=76.5
Q ss_pred CCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC---CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEE
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL---KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~ 83 (246)
..+++++|||+|||.++++++|+++|++||.|.+|.++++. +++|||||+|.+.++|.+|++.|||..+.|++|+|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 100 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQ 100 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 44677999999999999999999999999999999998754 678999999999999999999999999999999999
Q ss_pred EccCCc
Q psy4057 84 YSKTDS 89 (246)
Q Consensus 84 ~a~~~~ 89 (246)
+++.+.
T Consensus 101 ~a~~~~ 106 (115)
T 2cpz_A 101 LKRSKN 106 (115)
T ss_dssp CCCCSC
T ss_pred EcCCCC
Confidence 987654
No 124
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.80 E-value=2.9e-19 Score=125.15 Aligned_cols=81 Identities=22% Similarity=0.336 Sum_probs=75.6
Q ss_pred cCCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC--CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEE
Q psy4057 6 AHICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL--KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83 (246)
Q Consensus 6 ~~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~--~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~ 83 (246)
....++++|||+|||.++++++|+++|++||.|.+|.++.+. +++|||||+|.+.++|.+|++.|||..+.|++|+|.
T Consensus 24 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 24 AGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 456789999999999999999999999999999999998764 678999999999999999999999999999999999
Q ss_pred Ecc
Q psy4057 84 YSK 86 (246)
Q Consensus 84 ~a~ 86 (246)
++.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 974
No 125
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.4e-19 Score=123.92 Aligned_cols=79 Identities=27% Similarity=0.434 Sum_probs=74.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEE
Q psy4057 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKI 241 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v 241 (246)
...++++|||+|||.++++++|+++|++||.|..|+++.++ +|||||+|.+.++|..|+..|||..|. |+.|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~l~v 89 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYD-HLILNV 89 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEET-TEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeC-CcEEEE
Confidence 45579999999999999999999999999999999999875 579999999999999999999999999 999999
Q ss_pred EeecC
Q psy4057 242 SFAKK 246 (246)
Q Consensus 242 ~~ak~ 246 (246)
.||+.
T Consensus 90 ~~a~~ 94 (103)
T 2cq0_A 90 EWAKP 94 (103)
T ss_dssp EESSC
T ss_pred EECCC
Confidence 99873
No 126
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.80 E-value=2.8e-19 Score=125.84 Aligned_cols=82 Identities=16% Similarity=0.254 Sum_probs=75.8
Q ss_pred CCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC---CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEE
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL---KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~ 83 (246)
...++++|||+|||.++++++|+++|++||.|.+|.++.+. +++|||||+|.+.++|.+|+..|||..+.|++|.|.
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 44677899999999999999999999999999999998753 778999999999999999999999999999999999
Q ss_pred EccCC
Q psy4057 84 YSKTD 88 (246)
Q Consensus 84 ~a~~~ 88 (246)
++..+
T Consensus 102 ~a~~~ 106 (110)
T 1oo0_B 102 WCFVK 106 (110)
T ss_dssp ESEES
T ss_pred EcccC
Confidence 98654
No 127
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.80 E-value=3.8e-19 Score=119.97 Aligned_cols=80 Identities=21% Similarity=0.242 Sum_probs=74.1
Q ss_pred CCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC----CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEE
Q psy4057 9 CVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL----KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQY 84 (246)
Q Consensus 9 ~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 84 (246)
..+++|||+|||.++++++|+++|++||.|.+|.+..+. +++|||||+|.+.++|.+|++.|||..+.|++|+|.+
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 356899999999999999999999999999999998765 2789999999999999999999999999999999999
Q ss_pred ccCC
Q psy4057 85 SKTD 88 (246)
Q Consensus 85 a~~~ 88 (246)
+.+.
T Consensus 82 a~~~ 85 (88)
T 4a8x_A 82 VLAP 85 (88)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 8654
No 128
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=4.2e-19 Score=125.15 Aligned_cols=84 Identities=17% Similarity=0.329 Sum_probs=77.7
Q ss_pred cCCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC---CCccEEEEEEcCHHHHHHHHHHhc------CCccC
Q psy4057 6 AHICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL---KMRGQAFVIFKEIASATNALRSMQ------GFPFY 76 (246)
Q Consensus 6 ~~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~ln------g~~~~ 76 (246)
....++++|||+|||.++++++|+++|++||.|.+|.++++. +++|||||+|.+.++|.+|++.|| +..+.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 456778999999999999999999999999999999999764 689999999999999999999999 99999
Q ss_pred CeeEEEEEccCCc
Q psy4057 77 DKPMRIQYSKTDS 89 (246)
Q Consensus 77 g~~l~v~~a~~~~ 89 (246)
|++|+|.++..+.
T Consensus 90 g~~l~v~~a~~~~ 102 (111)
T 1x4h_A 90 GRQLKVDLAVTRD 102 (111)
T ss_dssp SCEEEEECCCCCC
T ss_pred CEEEEEEECCCCc
Confidence 9999999987654
No 129
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=2.9e-19 Score=124.31 Aligned_cols=83 Identities=23% Similarity=0.310 Sum_probs=76.6
Q ss_pred CCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccC-CCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEc
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKT-LKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYS 85 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~-~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a 85 (246)
...++++|||+|||.++++++|+++|++||.|.+|.++.+ ++++|||||+|.+.++|.+|++.|||..+.|++|.|.++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 3457899999999999999999999999999999999876 467899999999999999999999999999999999999
Q ss_pred cCCc
Q psy4057 86 KTDS 89 (246)
Q Consensus 86 ~~~~ 89 (246)
..+.
T Consensus 91 ~~~~ 94 (103)
T 2d9p_A 91 QRKE 94 (103)
T ss_dssp SSCC
T ss_pred cccc
Confidence 7654
No 130
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=6.3e-19 Score=122.58 Aligned_cols=79 Identities=16% Similarity=0.309 Sum_probs=73.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeC---CccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEe
Q psy4057 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPN---RHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISF 243 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~---~~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~ 243 (246)
...+.++|||+|||.++|+++|+++|++||.|..++++.+ .+|||||+|.+.++|..|+..|||..+. |++|+|.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~l~V~~ 89 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA-TKPLYVAL 89 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSS-SSBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeC-CcEEEEEE
Confidence 4457999999999999999999999999999999999986 2589999999999999999999999999 99999999
Q ss_pred ecC
Q psy4057 244 AKK 246 (246)
Q Consensus 244 ak~ 246 (246)
|+.
T Consensus 90 a~~ 92 (103)
T 2d9p_A 90 AQR 92 (103)
T ss_dssp CSS
T ss_pred ecc
Confidence 863
No 131
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.79 E-value=2.9e-19 Score=128.06 Aligned_cols=74 Identities=20% Similarity=0.359 Sum_probs=68.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCCccE-EEEEeCCHHHHHHHHHHhCCCccCCC--CceEEEeec
Q psy4057 171 NQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDI-AFVEFENEMQSAAAKLALHGFKITPT--HAMKISFAK 245 (246)
Q Consensus 171 ~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~~g~-afV~f~~~~~A~~Al~~l~g~~i~~g--~~l~v~~ak 245 (246)
-..|||+||++.+|+++|+++|++||.|.+|++..+.+|+ |||+|.+.++|..|++.|||+.|+ | ++|+|+|||
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~-g~~~~LrI~~ak 104 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIY-NACCTLRIDFSK 104 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEE-TTEEEEEEEECS
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeec-CCCcEEEEEecC
Confidence 3455699999999999999999999999999998877787 999999999999999999999998 5 999999997
No 132
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=5.6e-19 Score=119.78 Aligned_cols=78 Identities=14% Similarity=0.363 Sum_probs=73.3
Q ss_pred CCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEcc
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSK 86 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~ 86 (246)
..++.++|||+|||.++++++|+++|++||.|.+|.+. +|||||+|.+.++|.+|++.|||..+.|++|+|.++.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 78 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-----KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASK 78 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-----TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSS
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECC
Confidence 45788999999999999999999999999999999986 6999999999999999999999999999999999987
Q ss_pred CCc
Q psy4057 87 TDS 89 (246)
Q Consensus 87 ~~~ 89 (246)
...
T Consensus 79 ~~~ 81 (90)
T 2dnq_A 79 NKS 81 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 133
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.79 E-value=6.4e-19 Score=119.93 Aligned_cols=78 Identities=18% Similarity=0.256 Sum_probs=72.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC---ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEee
Q psy4057 168 QPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR---HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFA 244 (246)
Q Consensus 168 ~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~---~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~a 244 (246)
.++.++|||+|||.++++++|+++|++||.|..+++..+. +|||||+|.+.++|..|++.|||..+. |+.|+|.||
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~-g~~l~v~~a 83 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLS-GREIDVRID 83 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBT-TBCCCCEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEEC-CcEEEEEEc
Confidence 4578999999999999999999999999999999999853 589999999999999999999999999 999999998
Q ss_pred cC
Q psy4057 245 KK 246 (246)
Q Consensus 245 k~ 246 (246)
+.
T Consensus 84 ~~ 85 (92)
T 2dgv_A 84 RN 85 (92)
T ss_dssp SC
T ss_pred CC
Confidence 73
No 134
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.79 E-value=6.8e-19 Score=121.00 Aligned_cols=78 Identities=19% Similarity=0.333 Sum_probs=72.1
Q ss_pred cCCCCCcEEEecCCCh-hhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEE
Q psy4057 6 AHICVTNFVYVTHISS-TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQY 84 (246)
Q Consensus 6 ~~~~~~~~l~V~nl~~-~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 84 (246)
...+++++|||+|||. ++++++|+++|++||.|.+|.+ ++|||||+|.+.++|.+|++.|||..+.|++|+|.+
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 91 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI-----KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEV 91 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE-----CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE-----eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 4567899999999998 9999999999999999999988 489999999999999999999999999999999999
Q ss_pred ccCC
Q psy4057 85 SKTD 88 (246)
Q Consensus 85 a~~~ 88 (246)
++..
T Consensus 92 a~~~ 95 (97)
T 2xnq_A 92 SSSN 95 (97)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8654
No 135
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.79 E-value=2e-19 Score=130.16 Aligned_cols=83 Identities=25% Similarity=0.391 Sum_probs=77.3
Q ss_pred cCCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC---CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEE
Q psy4057 6 AHICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL---KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRI 82 (246)
Q Consensus 6 ~~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v 82 (246)
...+++++|||+|||.++++++|+++|++||.|.+|.++++. +++|||||+|.+.++|.+|++.|||..+.|++|+|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 356788999999999999999999999999999999998763 78999999999999999999999999999999999
Q ss_pred EEccCC
Q psy4057 83 QYSKTD 88 (246)
Q Consensus 83 ~~a~~~ 88 (246)
.++..+
T Consensus 121 ~~a~~~ 126 (129)
T 2kxn_B 121 DFSITK 126 (129)
T ss_dssp SCCSSS
T ss_pred EEecCC
Confidence 998654
No 136
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=1.5e-19 Score=127.55 Aligned_cols=83 Identities=17% Similarity=0.306 Sum_probs=75.9
Q ss_pred CCCCCcEEEecCCChhhhHHHHH---HHhhccCCeeEEEEccCC------CCccEEEEEEcCHHHHHHHHHHhcCCccCC
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLY---AIFSQFGQIMDIVALKTL------KMRGQAFVIFKEIASATNALRSMQGFPFYD 77 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~---~~F~~fG~i~~v~~~~~~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g 77 (246)
...+.++|||+|||.++++++|+ ++|++||.|.+|.+.++. +++|||||+|.+.++|++|++.|||..+.|
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 34567899999999999999999 999999999999998764 456999999999999999999999999999
Q ss_pred eeEEEEEccCCc
Q psy4057 78 KPMRIQYSKTDS 89 (246)
Q Consensus 78 ~~l~v~~a~~~~ 89 (246)
++|+|.++..+.
T Consensus 91 r~l~V~~a~~k~ 102 (111)
T 2cpi_A 91 RTLKASLGTTKY 102 (111)
T ss_dssp EEEEEESCCCCS
T ss_pred EEEEEEeccccc
Confidence 999999997664
No 137
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=2.6e-19 Score=123.63 Aligned_cols=82 Identities=15% Similarity=0.325 Sum_probs=76.1
Q ss_pred CCCCCcEEEecCCChhhhHHHHHHHhhccCCee-EEEEccCC---CCccEEEEEEcCHHHHHHHHHHhcCCccCCee---
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLYAIFSQFGQIM-DIVALKTL---KMRGQAFVIFKEIASATNALRSMQGFPFYDKP--- 79 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~-~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~--- 79 (246)
...++++|||+|||.++++++|+++|++||.|. +|.++++. +++|||||+|.+.++|.+|++.|||..+.|+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 456789999999999999999999999999999 99998764 77899999999999999999999999999999
Q ss_pred -EEEEEccCC
Q psy4057 80 -MRIQYSKTD 88 (246)
Q Consensus 80 -l~v~~a~~~ 88 (246)
|+|.++...
T Consensus 85 ~l~v~~a~~~ 94 (99)
T 2div_A 85 RFKLNYATYS 94 (99)
T ss_dssp ECCEEETTCC
T ss_pred eEEEeecCCC
Confidence 999998654
No 138
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.79 E-value=4.9e-19 Score=123.74 Aligned_cols=83 Identities=22% Similarity=0.353 Sum_probs=76.5
Q ss_pred CCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccC---CCCccEEEEEEcCHHHHHHHHHHhcCCcc---CCeeE
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKT---LKMRGQAFVIFKEIASATNALRSMQGFPF---YDKPM 80 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~---~~~kg~aFV~f~~~~~A~~Ai~~lng~~~---~g~~l 80 (246)
...+.++|||+|||.++++++|+++|++||.|.+|.++++ ++++|||||+|.+.++|.+|++.|||..+ .|++|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 4567899999999999999999999999999999999886 46899999999999999999999999887 89999
Q ss_pred EEEEccCCc
Q psy4057 81 RIQYSKTDS 89 (246)
Q Consensus 81 ~v~~a~~~~ 89 (246)
.|.++....
T Consensus 89 ~v~~a~~~~ 97 (106)
T 2dgp_A 89 QVKPADSES 97 (106)
T ss_dssp EEEECCCCS
T ss_pred EEEECCccc
Confidence 999987654
No 139
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.2e-19 Score=123.68 Aligned_cols=81 Identities=14% Similarity=0.253 Sum_probs=74.9
Q ss_pred CCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccC----CCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEE
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKT----LKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRI 82 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~----~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v 82 (246)
...+.++|||+|||.++++++|+++|++|| |.+|.++++ ++++|||||+|.+.++|.+|+ .||+..+.|++|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 88 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRV 88 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEE
Confidence 446789999999999999999999999999 999999976 467899999999999999999 89999999999999
Q ss_pred EEccCCc
Q psy4057 83 QYSKTDS 89 (246)
Q Consensus 83 ~~a~~~~ 89 (246)
.++..+.
T Consensus 89 ~~a~~~~ 95 (104)
T 1wi8_A 89 DVADQAQ 95 (104)
T ss_dssp EECCCCC
T ss_pred EEccCCC
Confidence 9987654
No 140
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.79 E-value=2.6e-19 Score=127.67 Aligned_cols=80 Identities=21% Similarity=0.303 Sum_probs=73.9
Q ss_pred CCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC---CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEE
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL---KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~ 83 (246)
..+++++|||+|||.++++++|+++|++||.|.+|.++++. +++|||||+|.+.++|.+|++.|||..+.|++|+|.
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567999999999999999999999999999999998763 779999999999999999999999999999999999
Q ss_pred Ecc
Q psy4057 84 YSK 86 (246)
Q Consensus 84 ~a~ 86 (246)
+++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 874
No 141
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=5.4e-19 Score=125.18 Aligned_cols=83 Identities=23% Similarity=0.329 Sum_probs=76.6
Q ss_pred cCCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC--CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEE
Q psy4057 6 AHICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL--KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83 (246)
Q Consensus 6 ~~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~--~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~ 83 (246)
...+++++|||+|||.++++++|+++|++||.|.+|.++++. +++|||||+|.+.++|.+|++.|||..+.|++|+|.
T Consensus 10 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 10 QAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 456788999999999999999999999999999999998764 678999999999999999999999999999999999
Q ss_pred EccCC
Q psy4057 84 YSKTD 88 (246)
Q Consensus 84 ~a~~~ 88 (246)
++...
T Consensus 90 ~a~~~ 94 (114)
T 2do0_A 90 MDERA 94 (114)
T ss_dssp ECSCC
T ss_pred EcccC
Confidence 98644
No 142
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3.8e-19 Score=123.46 Aligned_cols=78 Identities=23% Similarity=0.399 Sum_probs=73.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEE
Q psy4057 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKI 241 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v 241 (246)
..++.++|||+|||.++++++|+++|++||.|.+++++.++ +|||||+|.+.++|..|++.|||..|. |++|+|
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~l~V 86 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF-GRTIRV 86 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEET-TEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC-CcEEEE
Confidence 44578999999999999999999999999999999998873 589999999999999999999999999 999999
Q ss_pred Eeec
Q psy4057 242 SFAK 245 (246)
Q Consensus 242 ~~ak 245 (246)
.||+
T Consensus 87 ~~a~ 90 (102)
T 2cqb_A 87 NLAK 90 (102)
T ss_dssp EECC
T ss_pred EeCC
Confidence 9986
No 143
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=9.5e-19 Score=122.27 Aligned_cols=77 Identities=23% Similarity=0.371 Sum_probs=72.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEE
Q psy4057 168 QPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKIS 242 (246)
Q Consensus 168 ~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~ 242 (246)
..++++|||+|||.++++++|+++|++||.|.+++++.++ +|||||+|.+.++|..|+..|||..++ |+.|+|.
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~-g~~l~V~ 98 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLM-GQPISVD 98 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSS-SSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEEC-CcEEEEE
Confidence 4468999999999999999999999999999999999875 589999999999999999999999999 9999999
Q ss_pred eec
Q psy4057 243 FAK 245 (246)
Q Consensus 243 ~ak 245 (246)
||+
T Consensus 99 ~a~ 101 (106)
T 1p27_B 99 WCF 101 (106)
T ss_dssp ESE
T ss_pred eec
Confidence 986
No 144
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.79 E-value=6.2e-20 Score=124.54 Aligned_cols=78 Identities=14% Similarity=0.146 Sum_probs=68.2
Q ss_pred cEEEecCCChhhhHHHHHHHhhccC--CeeEEEEccCC---CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEcc
Q psy4057 12 NFVYVTHISSTDLKKSLYAIFSQFG--QIMDIVALKTL---KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSK 86 (246)
Q Consensus 12 ~~l~V~nl~~~~~e~~l~~~F~~fG--~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~ 86 (246)
.+|||+|||.++++++|+++|++|| .|.+|.++.+. +++|||||+|.+.++|.+|++.|||..+.|++|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999998753 789999999999999999999999999999999999987
Q ss_pred CCc
Q psy4057 87 TDS 89 (246)
Q Consensus 87 ~~~ 89 (246)
...
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 653
No 145
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=5.3e-19 Score=122.04 Aligned_cols=80 Identities=14% Similarity=0.325 Sum_probs=74.7
Q ss_pred CCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEcc
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSK 86 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~ 86 (246)
..+++++|||+|||.++++++|+++|++||.|.+|.+.+ ++|||||+|.+.++|.+|++.|||..+.|++|+|.++.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~---~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHK---DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFAC 87 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEET---TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEec---CCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcC
Confidence 457789999999999999999999999999999999875 58999999999999999999999999999999999997
Q ss_pred CCc
Q psy4057 87 TDS 89 (246)
Q Consensus 87 ~~~ 89 (246)
...
T Consensus 88 ~~~ 90 (99)
T 2cpj_A 88 HSA 90 (99)
T ss_dssp CCS
T ss_pred CCC
Confidence 654
No 146
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.1e-19 Score=124.79 Aligned_cols=78 Identities=22% Similarity=0.448 Sum_probs=73.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCCccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEeecC
Q psy4057 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~ak~ 246 (246)
..+..++|||+|||.++++++|+++|++||.|.+|+++.+ +|||||+|.+.++|..|+..|||..++ |++|+|.||+.
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~afV~f~~~~~a~~A~~~l~g~~~~-g~~l~v~~a~~ 98 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-KGYSFVRFSTHESAAHAIVSVNGTTIE-GHVVKCYWGKE 98 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHTTCEET-TEECEEECCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-CCEEEEEECCHHHHHHHHHHcCCCEEC-CcEEEEEecCC
Confidence 3456899999999999999999999999999999999998 489999999999999999999999999 99999999873
No 147
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.79 E-value=2.9e-19 Score=122.68 Aligned_cols=80 Identities=20% Similarity=0.351 Sum_probs=71.3
Q ss_pred ccCCCCCcEEEecCCCh-hhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEE
Q psy4057 5 LAHICVTNFVYVTHISS-TDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83 (246)
Q Consensus 5 ~~~~~~~~~l~V~nl~~-~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~ 83 (246)
+.+.+++++|||+|||. ++++++|+++|++||.|.+|.+ ++|||||+|.+.++|..|++.|||..+.|++|+|.
T Consensus 4 ~~~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i-----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 4 MHNIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI-----KNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp -----CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEE-----ETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred cccCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE-----eCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45678999999999998 9999999999999999999988 37999999999999999999999999999999999
Q ss_pred EccCCc
Q psy4057 84 YSKTDS 89 (246)
Q Consensus 84 ~a~~~~ 89 (246)
++....
T Consensus 79 ~a~~~~ 84 (96)
T 2kvi_A 79 VSSSNA 84 (96)
T ss_dssp EEECCC
T ss_pred EcCcCC
Confidence 987653
No 148
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.79 E-value=5.8e-19 Score=121.16 Aligned_cols=75 Identities=19% Similarity=0.302 Sum_probs=69.3
Q ss_pred CCCCCcEEEEcCCCC-CCCHHHHHHHHccCCCceEEEEeeCCccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEeec
Q psy4057 167 EQPPNQILFLTNLPE-ETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAK 245 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~-~~t~e~l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~ak 245 (246)
..+++++|||+|||. .+++++|+++|++||.|.++++. +|||||+|.+.++|..|+..|||..+. |++|+|.||+
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~---~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~l~V~~a~ 81 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK---NAFGFIQFDNPQSVRDAIECESQEMNF-GKKLILEVSS 81 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE---TTEEEEEESCHHHHHHHHHHHTCSSCB-TTTBCEEEEE
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe---CCEEEEEECCHHHHHHHHHHcCCCeeC-CcEEEEEEcC
Confidence 456899999999998 99999999999999999999996 589999999999999999999999999 9999999986
No 149
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.79 E-value=2.2e-19 Score=124.21 Aligned_cols=76 Identities=16% Similarity=0.230 Sum_probs=71.4
Q ss_pred CCCcEEEEcCCCC------CCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCC-
Q psy4057 169 PPNQILFLTNLPE------ETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPT- 236 (246)
Q Consensus 169 ~~~~~l~v~nL~~------~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g- 236 (246)
..+++|||+|||. ++++++|+++|++||.|.+++++.++ +|||||+|.+.++|.+|++.|||+.++ |
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~-g~ 82 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLD-LK 82 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSS-SS
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccC-CC
Confidence 3578999999999 99999999999999999999999865 589999999999999999999999999 7
Q ss_pred CceEEEeec
Q psy4057 237 HAMKISFAK 245 (246)
Q Consensus 237 ~~l~v~~ak 245 (246)
++|+|.+|+
T Consensus 83 r~l~V~~a~ 91 (100)
T 3ns6_A 83 HRLFLYTMK 91 (100)
T ss_dssp CBCEEEESH
T ss_pred eEEEEEECc
Confidence 999999985
No 150
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=4.1e-19 Score=122.39 Aligned_cols=77 Identities=22% Similarity=0.389 Sum_probs=71.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC--------ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceE
Q psy4057 169 PPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR--------HDIAFVEFENEMQSAAAKLALHGFKITPTHAMK 240 (246)
Q Consensus 169 ~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~--------~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~ 240 (246)
+++++|||+|||.++++++|+++|++||.|..++++.++ +|||||+|.+.++|..|+..|||..|+ |++|+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~-g~~l~ 81 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVD-GHKLE 81 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEET-TEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeC-CeEEE
Confidence 468999999999999999999999999999999998743 479999999999999999999999999 99999
Q ss_pred EEeecC
Q psy4057 241 ISFAKK 246 (246)
Q Consensus 241 v~~ak~ 246 (246)
|.||+.
T Consensus 82 V~~a~~ 87 (98)
T 2cpf_A 82 VRISER 87 (98)
T ss_dssp EECSSC
T ss_pred EEEccC
Confidence 999873
No 151
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.79 E-value=9.1e-19 Score=124.37 Aligned_cols=78 Identities=32% Similarity=0.468 Sum_probs=73.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEe
Q psy4057 168 QPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISF 243 (246)
Q Consensus 168 ~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~ 243 (246)
..+.++|||+|||.++++++|+++|++||.|..|.+..+. +|||||+|.+.++|.+|++.|||..|. |+.|+|.|
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~-g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLH-GKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCS-SSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC-CEEEEEEE
Confidence 3468899999999999999999999999999999999865 589999999999999999999999999 99999999
Q ss_pred ecC
Q psy4057 244 AKK 246 (246)
Q Consensus 244 ak~ 246 (246)
|+.
T Consensus 83 a~~ 85 (116)
T 2fy1_A 83 AKK 85 (116)
T ss_dssp CCC
T ss_pred CCC
Confidence 974
No 152
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.79 E-value=3.2e-19 Score=125.22 Aligned_cols=81 Identities=7% Similarity=0.029 Sum_probs=73.0
Q ss_pred CCCCCcEEEecCCChhhhHHHHHHHhhccC-CeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEc
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLYAIFSQFG-QIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYS 85 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG-~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a 85 (246)
..+...+|||+|||+++++++|+++|++|| .|..+.+.. .+++|||||+|.+.++|++|++.|||..+.|++|+|.++
T Consensus 24 ~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~-~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 24 LPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT-RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp -CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS-CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc-CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 455678999999999999999999999999 899998854 358999999999999999999999999999999999998
Q ss_pred cCC
Q psy4057 86 KTD 88 (246)
Q Consensus 86 ~~~ 88 (246)
...
T Consensus 103 ~~~ 105 (111)
T 2jvr_A 103 DNP 105 (111)
T ss_dssp CC-
T ss_pred CCC
Confidence 644
No 153
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=7e-19 Score=123.62 Aligned_cols=81 Identities=28% Similarity=0.376 Sum_probs=75.4
Q ss_pred CCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEcc
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSK 86 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~ 86 (246)
..++.++|||+|||.++++++|+++|++||.|.+|.+.++ +|||||+|.+.++|.+|++.|||..+.|++|+|.+++
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~---~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 97 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE---KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 97 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC---CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecC
Confidence 4567899999999999999999999999999999999875 8999999999999999999999999999999999997
Q ss_pred CCcc
Q psy4057 87 TDSD 90 (246)
Q Consensus 87 ~~~~ 90 (246)
....
T Consensus 98 ~~~~ 101 (109)
T 1x4g_A 98 ESPD 101 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 6643
No 154
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.79 E-value=6.1e-19 Score=118.98 Aligned_cols=75 Identities=17% Similarity=0.271 Sum_probs=70.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC------ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEe
Q psy4057 170 PNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR------HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISF 243 (246)
Q Consensus 170 ~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~------~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~ 243 (246)
.+++|||+|||.++|+++|+++|++||.|.+++++.+. +|||||+|.+.++|..|+..|||..++ |+.|+|++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~-g~~l~v~~ 81 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQID-GQEITATA 81 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEET-TEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeEC-CeEEEEEE
Confidence 57899999999999999999999999999999998754 589999999999999999999999999 99999999
Q ss_pred ec
Q psy4057 244 AK 245 (246)
Q Consensus 244 ak 245 (246)
|+
T Consensus 82 a~ 83 (88)
T 4a8x_A 82 VL 83 (88)
T ss_dssp EC
T ss_pred CC
Confidence 86
No 155
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=5.6e-19 Score=121.91 Aligned_cols=78 Identities=19% Similarity=0.312 Sum_probs=72.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHccCCCce-EEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCc--
Q psy4057 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFK-EVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHA-- 238 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~-~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~-- 238 (246)
...++++|||+|||.++++++|+++|++||.|. +++++.++ +|||||+|.+.++|..|++.|||..+. |+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~-g~~~~ 83 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLP-GATPA 83 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEES-SCSSC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccC-CCCcc
Confidence 345789999999999999999999999999999 99999875 489999999999999999999999999 888
Q ss_pred --eEEEeec
Q psy4057 239 --MKISFAK 245 (246)
Q Consensus 239 --l~v~~ak 245 (246)
|+|.||+
T Consensus 84 ~~l~v~~a~ 92 (99)
T 2div_A 84 KRFKLNYAT 92 (99)
T ss_dssp EECCEEETT
T ss_pred eeEEEeecC
Confidence 9999986
No 156
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.79 E-value=4.3e-19 Score=123.84 Aligned_cols=78 Identities=22% Similarity=0.388 Sum_probs=72.2
Q ss_pred CcEEEecCCChhh------hHHHHHHHhhccCCeeEEEEcc-CCCCccEEEEEEcCHHHHHHHHHHhcCCccCCe-eEEE
Q psy4057 11 TNFVYVTHISSTD------LKKSLYAIFSQFGQIMDIVALK-TLKMRGQAFVIFKEIASATNALRSMQGFPFYDK-PMRI 82 (246)
Q Consensus 11 ~~~l~V~nl~~~~------~e~~l~~~F~~fG~i~~v~~~~-~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~-~l~v 82 (246)
+++|||+|||..+ ++++|+++|++||.|.+|.+.+ +++++|||||+|.+.++|.+|++.|||..+.|+ +|+|
T Consensus 15 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V 94 (105)
T 2nlw_A 15 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 94 (105)
T ss_dssp CSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEE
T ss_pred CCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEE
Confidence 7899999999999 8999999999999999999884 347899999999999999999999999999998 9999
Q ss_pred EEccCC
Q psy4057 83 QYSKTD 88 (246)
Q Consensus 83 ~~a~~~ 88 (246)
.++...
T Consensus 95 ~~a~~~ 100 (105)
T 2nlw_A 95 NLFTDF 100 (105)
T ss_dssp ECSCCC
T ss_pred EEcchH
Confidence 998643
No 157
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1e-18 Score=118.94 Aligned_cols=75 Identities=17% Similarity=0.273 Sum_probs=70.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCCccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEeec
Q psy4057 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAK 245 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~ak 245 (246)
...+.++|||+|||.++++++|+++|++||.|.+++++++ ||||+|.+.++|.+|+..|||..+. |+.|+|+||+
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~---~afV~f~~~~~a~~A~~~l~g~~~~-g~~l~V~~a~ 80 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD---YAFVHMERAEDAVEAIRGLDNTEFQ-GKRMHVQLST 80 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS---EEEEEESCHHHHHHHHHHHTTEEET-TEEEEEEESS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC---EEEEEECCHHHHHHHHHHhCCCeeC-CcEEEEEEcc
Confidence 4557899999999999999999999999999999999854 9999999999999999999999999 9999999986
No 158
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.79 E-value=1e-18 Score=122.18 Aligned_cols=78 Identities=23% Similarity=0.366 Sum_probs=72.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCcc---CCCCc
Q psy4057 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKI---TPTHA 238 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i---~~g~~ 238 (246)
..++.++|||+|||.++++++|+++|++||.|.+|+++.++ +|||||+|.+.++|..|++.|||..+ . |++
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~-g~~ 87 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGM-NRP 87 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTC-SSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCC-Cce
Confidence 45578999999999999999999999999999999999864 58999999999999999999999987 6 899
Q ss_pred eEEEeec
Q psy4057 239 MKISFAK 245 (246)
Q Consensus 239 l~v~~ak 245 (246)
|+|.||+
T Consensus 88 l~v~~a~ 94 (106)
T 2dgp_A 88 IQVKPAD 94 (106)
T ss_dssp CEEEECC
T ss_pred EEEEECC
Confidence 9999986
No 159
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=7.8e-19 Score=117.17 Aligned_cols=74 Identities=18% Similarity=0.218 Sum_probs=65.7
Q ss_pred CCCCCcE-EEEcCCCCCCCHHH----HHHHHccC-CCceEEEEeeCCccEEEEEeCCHHHHHHHHHHhCCCccCCCCceE
Q psy4057 167 EQPPNQI-LFLTNLPEETSEMM----LSMLFNQF-PGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMK 240 (246)
Q Consensus 167 ~~~~~~~-l~v~nL~~~~t~e~----l~~~f~~~-G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~ 240 (246)
..+|+.+ |||+|||.++++++ |+++|++| |.|.+|- . |+|||.|.+.++|.+|++.|||+.++ |++|+
T Consensus 4 ~~~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt----g-G~AfV~F~~~esA~~A~~~l~G~~l~-gr~i~ 77 (96)
T 2diu_A 4 GSSGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT----G-CSAILRFINQDSAERAQKRMENEDVF-GNRII 77 (96)
T ss_dssp SCCCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC----T-TCEEEEESSHHHHHHHHHHHTTCCSS-SSCCE
T ss_pred CCCCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe----c-CEEEEEECCHHHHHHHHHHhcCCccC-CceEE
Confidence 3456777 88999999999988 55899999 5999881 2 89999999999999999999999999 99999
Q ss_pred EEeecC
Q psy4057 241 ISFAKK 246 (246)
Q Consensus 241 v~~ak~ 246 (246)
|+|||.
T Consensus 78 v~~A~~ 83 (96)
T 2diu_A 78 VSFTPK 83 (96)
T ss_dssp EESSCC
T ss_pred EEecCC
Confidence 999984
No 160
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=1.7e-18 Score=122.62 Aligned_cols=78 Identities=15% Similarity=0.236 Sum_probs=73.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEE
Q psy4057 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKIS 242 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~ 242 (246)
..+++++|||+|||.++++++|+++|++||.|.+++++.++ +|||||+|.+.++|..|++.|||..|. |+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~-g~~l~v~ 89 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLF-DRPMHVK 89 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEET-TEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC-CCEEEEE
Confidence 45578999999999999999999999999999999999875 579999999999999999999999999 9999999
Q ss_pred eec
Q psy4057 243 FAK 245 (246)
Q Consensus 243 ~ak 245 (246)
||+
T Consensus 90 ~a~ 92 (114)
T 2do0_A 90 MDE 92 (114)
T ss_dssp ECS
T ss_pred Ecc
Confidence 986
No 161
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.1e-18 Score=122.31 Aligned_cols=74 Identities=14% Similarity=0.109 Sum_probs=71.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCCccEEEEEeCCHHHHHHHHHHhCCCccCCC-----CceEEEe
Q psy4057 169 PPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPT-----HAMKISF 243 (246)
Q Consensus 169 ~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~~g-----~~l~v~~ 243 (246)
...++|||+|||.++|+++|+++|++||.|..++++.+ |||||+|.+.++|..|++.|||..|. | +.|+|.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~-g~~~~~~~i~V~~ 89 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFR-SHEGETAYIRVKV 89 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT--TEEEEEESSHHHHHHHHHHSSSEEEE-CTTSCEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC--CEEEEEECCHHHHHHHHHHHCcCCcc-CCcCcceEEEEEe
Confidence 45899999999999999999999999999999999998 89999999999999999999999999 8 9999999
Q ss_pred ec
Q psy4057 244 AK 245 (246)
Q Consensus 244 ak 245 (246)
|+
T Consensus 90 a~ 91 (108)
T 1x4c_A 90 DG 91 (108)
T ss_dssp SS
T ss_pred CC
Confidence 86
No 162
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.78 E-value=5.9e-19 Score=119.31 Aligned_cols=78 Identities=18% Similarity=0.303 Sum_probs=72.7
Q ss_pred CCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC---CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEcc
Q psy4057 10 VTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL---KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSK 86 (246)
Q Consensus 10 ~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~ 86 (246)
.+++|||+|||.++++++|+++|++||.|.++.+.++. +++|||||+|.+.++|.+|+ .|||..+.|++|+|.+++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 46899999999999999999999999999999998753 77899999999999999999 899999999999999986
Q ss_pred CC
Q psy4057 87 TD 88 (246)
Q Consensus 87 ~~ 88 (246)
..
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 163
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=6.3e-19 Score=118.14 Aligned_cols=78 Identities=19% Similarity=0.279 Sum_probs=72.7
Q ss_pred cCCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHh-cCCccCCeeEEEEE
Q psy4057 6 AHICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSM-QGFPFYDKPMRIQY 84 (246)
Q Consensus 6 ~~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~l-ng~~~~g~~l~v~~ 84 (246)
...+++++|||+|||.++++++|+++|++||.|.+|.+.+ ++|||||+|.+.++|.+|++.| +|..+.|++|+|.+
T Consensus 7 ~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~---~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ 83 (85)
T 2ytc_A 7 GEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ---RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKW 83 (85)
T ss_dssp CSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG---GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEE
T ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC---CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEe
Confidence 3456789999999999999999999999999999999987 5899999999999999999999 99999999999999
Q ss_pred cc
Q psy4057 85 SK 86 (246)
Q Consensus 85 a~ 86 (246)
++
T Consensus 84 ak 85 (85)
T 2ytc_A 84 GR 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 164
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.78 E-value=1.1e-18 Score=123.70 Aligned_cols=77 Identities=19% Similarity=0.412 Sum_probs=72.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC--ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEeec
Q psy4057 168 QPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR--HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAK 245 (246)
Q Consensus 168 ~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~--~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~ak 245 (246)
.+++++|||+|||.++|+++|+++|+.||.|.+++++.+. +|||||+|.+.++|..|+..|||..++ |+.|+|.||+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~l~v~~a~ 83 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVS-NRYLVVLYYN 83 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSS-SCBCEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEEC-CeEEEEEEec
Confidence 3468999999999999999999999999999999998765 589999999999999999999999999 9999999986
No 165
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=3.7e-19 Score=122.08 Aligned_cols=77 Identities=25% Similarity=0.352 Sum_probs=72.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHccCCCceEE-EEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEE
Q psy4057 169 PPNQILFLTNLPEETSEMMLSMLFNQFPGFKEV-RLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKIS 242 (246)
Q Consensus 169 ~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v-~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~ 242 (246)
+++++|||+|||.++++++|+++|++||.|..+ +++.++ +|||||+|.+.++|..|+..|||..+. |++|+|.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~l~v~ 81 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLC-NRPITVS 81 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEET-TEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEEC-CEEEEEE
Confidence 468999999999999999999999999999999 998873 589999999999999999999999999 9999999
Q ss_pred eecC
Q psy4057 243 FAKK 246 (246)
Q Consensus 243 ~ak~ 246 (246)
||+.
T Consensus 82 ~a~~ 85 (96)
T 1x5t_A 82 YAFK 85 (96)
T ss_dssp ESCC
T ss_pred Eecc
Confidence 9863
No 166
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.78 E-value=4.1e-19 Score=123.06 Aligned_cols=77 Identities=21% Similarity=0.423 Sum_probs=72.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCCccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEeecC
Q psy4057 168 QPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246 (246)
Q Consensus 168 ~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~ak~ 246 (246)
.+.+++|||+|||.++++++|+++|++||.|.++++.+.+ |||||+|.+.++|..|+..|||..++ |+.|+|.|||.
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~-g~afV~f~~~~~A~~Ai~~l~g~~~~-g~~l~V~~a~~ 100 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEK-GCCFIKYDTHEQAAVCIVALANFPFQ-GRNLRTGWGKE 100 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETTT-TEEEEECSSHHHHHHHHHHHTTCEET-TEECCCCBCCC
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecCC-CEEEEEECCHHHHHHHHHHhCCCeEC-CeEEEEEeccC
Confidence 3457999999999999999999999999999999999654 89999999999999999999999999 99999999973
No 167
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=3.9e-19 Score=124.61 Aligned_cols=78 Identities=18% Similarity=0.267 Sum_probs=71.1
Q ss_pred CCCCCcEEEE--cCCCCCCCHHHHHHHHccCCCceEEEEeeCCccEEEEEeCCHHHHHHHHHHhCCCcc-----CCCCce
Q psy4057 167 EQPPNQILFL--TNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKI-----TPTHAM 239 (246)
Q Consensus 167 ~~~~~~~l~v--~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i-----~~g~~l 239 (246)
...++++||| +||+.++++++|+++|++||.|.+|.++.++ |||||+|.+.++|.+|++.|||+.+ . |++|
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~r-gfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~-g~~l 98 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNK-PYSFARYRTTEESKRAYVTLNGKEVVDDLGQ-KITL 98 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTTC-SCEEEEESSHHHHHHHHHHTTTCEEECTTSC-EEEC
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCC-CEEEEEECCHHHHHHHHHHhCCCEEccccCC-CcEE
Confidence 3457899999 6699999999999999999999999988764 8999999999999999999999988 5 8999
Q ss_pred EEEeecC
Q psy4057 240 KISFAKK 246 (246)
Q Consensus 240 ~v~~ak~ 246 (246)
.|.|+++
T Consensus 99 ~v~~a~~ 105 (114)
T 2cq2_A 99 YLNFVEK 105 (114)
T ss_dssp EEEEESC
T ss_pred EEEeccc
Confidence 9999974
No 168
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.78 E-value=7.5e-19 Score=127.10 Aligned_cols=79 Identities=25% Similarity=0.373 Sum_probs=73.7
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceE
Q psy4057 166 PEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMK 240 (246)
Q Consensus 166 ~~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~ 240 (246)
...+++++|||+|||.++++++|+++|++||.|..|+++.++ +|||||+|.+.++|.+|+..|||..|. |++|+
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~-g~~l~ 119 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELD-GRRIR 119 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSS-SSCCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC-CEEEE
Confidence 345678999999999999999999999999999999999864 589999999999999999999999999 99999
Q ss_pred EEeec
Q psy4057 241 ISFAK 245 (246)
Q Consensus 241 v~~ak 245 (246)
|.||+
T Consensus 120 V~~a~ 124 (129)
T 2kxn_B 120 VDFSI 124 (129)
T ss_dssp ESCCS
T ss_pred EEEec
Confidence 99986
No 169
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.78 E-value=1.4e-18 Score=121.71 Aligned_cols=78 Identities=22% Similarity=0.283 Sum_probs=73.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEE
Q psy4057 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKIS 242 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~ 242 (246)
...++++|||+|||..+++++|+++|+.||.|..++++.+. +|||||+|.+.++|.+|++.|||..++ |+.|+|+
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~-g~~l~V~ 103 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLD-GRPMNIQ 103 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEET-TEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeC-CcEEEEE
Confidence 45579999999999999999999999999999999999874 579999999999999999999999999 9999999
Q ss_pred eec
Q psy4057 243 FAK 245 (246)
Q Consensus 243 ~ak 245 (246)
||+
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 986
No 170
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=6.6e-19 Score=122.26 Aligned_cols=77 Identities=12% Similarity=0.166 Sum_probs=71.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEE
Q psy4057 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKIS 242 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~ 242 (246)
.....++|||+|||.++|+++|+++|++||.|.+|+++.++ +|||||+|.+.++|..|+. +||..++ |+.|.|.
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~-gr~l~V~ 84 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYK-ETDLLIL 84 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCT-TTTCEEE
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEEC-CEEEEEE
Confidence 34468999999999999999999999999999999999864 5899999999999999999 9999999 9999999
Q ss_pred eec
Q psy4057 243 FAK 245 (246)
Q Consensus 243 ~ak 245 (246)
+++
T Consensus 85 ~~~ 87 (103)
T 1s79_A 85 FKD 87 (103)
T ss_dssp EHH
T ss_pred Ech
Confidence 864
No 171
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.78 E-value=8.7e-19 Score=123.32 Aligned_cols=78 Identities=29% Similarity=0.430 Sum_probs=73.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEE
Q psy4057 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKI 241 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v 241 (246)
...++++|||+|||.++|+++|+++|+.||.|..++++.++ +|||||+|.+.++|..|+..|||..++ |++|+|
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~-g~~l~V 100 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIM-GQTIQV 100 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEET-TEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC-CcEEEE
Confidence 34568999999999999999999999999999999999875 589999999999999999999999999 999999
Q ss_pred Eeec
Q psy4057 242 SFAK 245 (246)
Q Consensus 242 ~~ak 245 (246)
.||+
T Consensus 101 ~~a~ 104 (110)
T 1oo0_B 101 DWCF 104 (110)
T ss_dssp EESE
T ss_pred EEcc
Confidence 9986
No 172
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.6e-18 Score=122.15 Aligned_cols=78 Identities=24% Similarity=0.397 Sum_probs=73.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhC------CCccCC
Q psy4057 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALH------GFKITP 235 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~------g~~i~~ 235 (246)
...+.++|||+|||.++++++|+++|++||.|..|+++.++ +|||||+|.+.++|..|+..|| |..|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~- 89 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD- 89 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS-
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc-
Confidence 45578999999999999999999999999999999999763 5899999999999999999999 99999
Q ss_pred CCceEEEeec
Q psy4057 236 THAMKISFAK 245 (246)
Q Consensus 236 g~~l~v~~ak 245 (246)
|++|+|.||+
T Consensus 90 g~~l~v~~a~ 99 (111)
T 1x4h_A 90 GRQLKVDLAV 99 (111)
T ss_dssp SCEEEEECCC
T ss_pred CEEEEEEECC
Confidence 9999999986
No 173
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=1.6e-18 Score=119.15 Aligned_cols=78 Identities=18% Similarity=0.370 Sum_probs=70.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEeec
Q psy4057 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAK 245 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~ak 245 (246)
..+.+++|||+|||.++++++|+++|++||.|. +.++.++ +|||||+|.+.++|..|+..|||..|. |++|+|.||+
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~-g~~l~V~~a~ 92 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLG-TDTLRVALAR 92 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSS-SSCCEEEECC
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEEC-CcEEEEEEcC
Confidence 345689999999999999999999999999996 5665544 699999999999999999999999999 9999999986
Q ss_pred C
Q psy4057 246 K 246 (246)
Q Consensus 246 ~ 246 (246)
.
T Consensus 93 ~ 93 (97)
T 2e5j_A 93 Q 93 (97)
T ss_dssp C
T ss_pred C
Confidence 3
No 174
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.78 E-value=4e-19 Score=123.10 Aligned_cols=77 Identities=21% Similarity=0.419 Sum_probs=72.0
Q ss_pred CCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEccC
Q psy4057 8 ICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKT 87 (246)
Q Consensus 8 ~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~~ 87 (246)
.+.+++|||+|||.++++++|+++|++||.|.+|.+. +++|||||+|.+.++|.+|++.|||..+.|++|+|.+++.
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~---~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY---PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe---cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 3457899999999999999999999999999999887 4789999999999999999999999999999999999864
No 175
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.78 E-value=9.6e-19 Score=132.04 Aligned_cols=77 Identities=30% Similarity=0.434 Sum_probs=72.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEE
Q psy4057 168 QPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKIS 242 (246)
Q Consensus 168 ~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~ 242 (246)
..++++|||+|||..+++++|+.+|++||.|..|.++.++ +|||||+|.+.++|..|+..|||..|. |++|.|.
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~-g~~l~V~ 147 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIM-GQTIQVD 147 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEET-TEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEEC-CEEEEEE
Confidence 4468899999999999999999999999999999999874 589999999999999999999999999 9999999
Q ss_pred eec
Q psy4057 243 FAK 245 (246)
Q Consensus 243 ~ak 245 (246)
||+
T Consensus 148 ~a~ 150 (165)
T 1rk8_A 148 WCF 150 (165)
T ss_dssp ESE
T ss_pred Eec
Confidence 986
No 176
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=8.2e-19 Score=124.05 Aligned_cols=83 Identities=18% Similarity=0.260 Sum_probs=76.4
Q ss_pred CCCCCcEEEecCCChhhhHHHHHHHhhccCCee--------EEEEccC---CCCccEEEEEEcCHHHHHHHHHHhcCCcc
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLYAIFSQFGQIM--------DIVALKT---LKMRGQAFVIFKEIASATNALRSMQGFPF 75 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~--------~v~~~~~---~~~kg~aFV~f~~~~~A~~Ai~~lng~~~ 75 (246)
...++++|||+|||.++++++|+++|++||.|. .|.++.+ ++++|||||+|.+.++|.+|++.|||..+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 456789999999999999999999999999999 6888876 37889999999999999999999999999
Q ss_pred CCeeEEEEEccCCc
Q psy4057 76 YDKPMRIQYSKTDS 89 (246)
Q Consensus 76 ~g~~l~v~~a~~~~ 89 (246)
.|++|+|.++....
T Consensus 91 ~g~~l~V~~a~~~~ 104 (113)
T 2cpe_A 91 QGSKLKVSLARKKP 104 (113)
T ss_dssp TTEECEEECSSCCC
T ss_pred CCCEEEEEECCCCC
Confidence 99999999987654
No 177
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.78 E-value=8e-19 Score=126.54 Aligned_cols=84 Identities=14% Similarity=0.313 Sum_probs=76.6
Q ss_pred cCCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC---CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEE
Q psy4057 6 AHICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL---KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRI 82 (246)
Q Consensus 6 ~~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v 82 (246)
....++++|||+|||.++++++|+++|++||.|.+|.++.+. .++|||||+|.+.++|.+|++.|||..+.|++|.|
T Consensus 17 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 96 (126)
T 3ex7_B 17 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 96 (126)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 345668899999999999999999999999999999998663 67899999999999999999999999999999999
Q ss_pred EEccCCc
Q psy4057 83 QYSKTDS 89 (246)
Q Consensus 83 ~~a~~~~ 89 (246)
.++....
T Consensus 97 ~~a~~~~ 103 (126)
T 3ex7_B 97 DWCFVRG 103 (126)
T ss_dssp EESEESS
T ss_pred EEecCCC
Confidence 9986543
No 178
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=4.8e-19 Score=123.35 Aligned_cols=83 Identities=18% Similarity=0.231 Sum_probs=76.7
Q ss_pred CCCCCcEEEecCCChhhhHHHHHHHhhc-cCCeeEEEEccCC--CCccEEEEEEcCHHHHHHHHHHhcCCc-cCCeeEEE
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLYAIFSQ-FGQIMDIVALKTL--KMRGQAFVIFKEIASATNALRSMQGFP-FYDKPMRI 82 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~~~F~~-fG~i~~v~~~~~~--~~kg~aFV~f~~~~~A~~Ai~~lng~~-~~g~~l~v 82 (246)
...++++|||+|||.++++++|+++|++ ||.|.+|.++++. +++|||||+|.+.++|.+|++.|||.. +.|++|+|
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 4578899999999999999999999999 9999999998764 778999999999999999999999999 99999999
Q ss_pred EEccCCc
Q psy4057 83 QYSKTDS 89 (246)
Q Consensus 83 ~~a~~~~ 89 (246)
.++....
T Consensus 85 ~~a~~~~ 91 (104)
T 2dhg_A 85 SVAIPKA 91 (104)
T ss_dssp CBCCCCC
T ss_pred EEccCCC
Confidence 9986553
No 179
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.78 E-value=2.7e-19 Score=118.89 Aligned_cols=72 Identities=24% Similarity=0.450 Sum_probs=66.8
Q ss_pred CcEEEecCCChhh------hHHHHHHHhhccCCeeEEEEcc-CCCCccEEEEEEcCHHHHHHHHHHhcCCccCCe-eEEE
Q psy4057 11 TNFVYVTHISSTD------LKKSLYAIFSQFGQIMDIVALK-TLKMRGQAFVIFKEIASATNALRSMQGFPFYDK-PMRI 82 (246)
Q Consensus 11 ~~~l~V~nl~~~~------~e~~l~~~F~~fG~i~~v~~~~-~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~-~l~v 82 (246)
+++|||+|||.++ ++++|+++|++||.|.+|.+.+ +++++|||||+|.+.++|.+|++.|||..+.|+ +|+|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 5799999999999 8899999999999999999875 347899999999999999999999999999999 8876
No 180
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.1e-19 Score=121.84 Aligned_cols=78 Identities=15% Similarity=0.242 Sum_probs=72.7
Q ss_pred CCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC---CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEE
Q psy4057 8 ICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL---KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQY 84 (246)
Q Consensus 8 ~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 84 (246)
.+++++|||+|||.++++++|+++|++||.|.+|.++.+. +++|||||+|.+.++|.+|++.|||..+.|+.|++.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 4688999999999999999999999999999999998763 7789999999999999999999999999999998876
Q ss_pred c
Q psy4057 85 S 85 (246)
Q Consensus 85 a 85 (246)
+
T Consensus 82 ~ 82 (85)
T 1x4e_A 82 P 82 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 181
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.78 E-value=9.7e-19 Score=117.78 Aligned_cols=78 Identities=22% Similarity=0.317 Sum_probs=71.8
Q ss_pred CCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccC---CCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEE
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKT---LKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~---~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~ 83 (246)
...+.++|||+|||.++++++|+++|++||.|.+|.++++ ++++|||||+|.+.++|.+|++ +++..+.|++|+|.
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 4567899999999999999999999999999999999876 4778999999999999999996 68889999999998
Q ss_pred Ec
Q psy4057 84 YS 85 (246)
Q Consensus 84 ~a 85 (246)
+|
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 182
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.78 E-value=9.4e-19 Score=122.68 Aligned_cols=79 Identities=28% Similarity=0.461 Sum_probs=73.0
Q ss_pred cCCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEc
Q psy4057 6 AHICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYS 85 (246)
Q Consensus 6 ~~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a 85 (246)
....++++|||+|||.++++++|+++|++||.|.+|.+. +|||||+|.+.++|.+|++.|||..+.|++|+|.++
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-----kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 100 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-----NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYS 100 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESC
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 456788999999999999999999999999999999987 799999999999999999999999999999999998
Q ss_pred cCCc
Q psy4057 86 KTDS 89 (246)
Q Consensus 86 ~~~~ 89 (246)
....
T Consensus 101 ~~~~ 104 (108)
T 2jvo_A 101 KLPA 104 (108)
T ss_dssp SCCC
T ss_pred cCCC
Confidence 7653
No 183
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.78 E-value=5.3e-19 Score=124.11 Aligned_cols=77 Identities=16% Similarity=0.086 Sum_probs=71.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHccCC-CceEEEEee-CCccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEeec
Q psy4057 168 QPPNQILFLTNLPEETSEMMLSMLFNQFP-GFKEVRLVP-NRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAK 245 (246)
Q Consensus 168 ~~~~~~l~v~nL~~~~t~e~l~~~f~~~G-~i~~v~~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~ak 245 (246)
.+...+|||+|||.++++++|+++|++|| .|..+.+.. +.+|||||+|.+.++|..|++.|||..|+ |+.|+|.+|+
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~-Gr~i~V~~a~ 103 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFR-GSVITVERDD 103 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEET-TEEEEEEESC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEEC-CeEEEEEECC
Confidence 33578999999999999999999999999 899999964 45799999999999999999999999999 9999999986
No 184
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.4e-18 Score=117.76 Aligned_cols=78 Identities=19% Similarity=0.306 Sum_probs=72.7
Q ss_pred CCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEcc
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSK 86 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~ 86 (246)
..+++++|||+|||.++++++|+++|++||.|.+|.+. ++||||+|.+.++|.+|++.|||..+.|++|+|.++.
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 79 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV-----KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELST 79 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC-----SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECC
Confidence 45788999999999999999999999999999999996 4599999999999999999999999999999999987
Q ss_pred CCc
Q psy4057 87 TDS 89 (246)
Q Consensus 87 ~~~ 89 (246)
...
T Consensus 80 ~~~ 82 (90)
T 2dnp_A 80 KGQ 82 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 185
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.4e-18 Score=122.89 Aligned_cols=79 Identities=22% Similarity=0.287 Sum_probs=73.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHccCCCce--------EEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCcc
Q psy4057 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFK--------EVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKI 233 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~--------~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i 233 (246)
...+.++|||+|||.++|+++|+++|++||.|. .++++.++ +|||||+|.+.++|..|+..|||..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 455789999999999999999999999999998 69999874 58999999999999999999999999
Q ss_pred CCCCceEEEeecC
Q psy4057 234 TPTHAMKISFAKK 246 (246)
Q Consensus 234 ~~g~~l~v~~ak~ 246 (246)
. |+.|+|.||+.
T Consensus 91 ~-g~~l~V~~a~~ 102 (113)
T 2cpe_A 91 Q-GSKLKVSLARK 102 (113)
T ss_dssp T-TEECEEECSSC
T ss_pred C-CCEEEEEECCC
Confidence 9 99999999873
No 186
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.78 E-value=5.3e-19 Score=122.50 Aligned_cols=73 Identities=22% Similarity=0.336 Sum_probs=70.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCCccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEeec
Q psy4057 172 QILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAK 245 (246)
Q Consensus 172 ~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~ak 245 (246)
++|||+|||.++|+++|+++|++||.|..++++.+.+|||||+|.+.++|..|++.|||..+. |+.|+|.||+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~-g~~l~V~~a~ 73 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVIC-GSRVRVELST 73 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSS-SCCCEEEESS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeEC-CcEEEEEEcc
Confidence 479999999999999999999999999999999986799999999999999999999999999 9999999986
No 187
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.78 E-value=1.1e-18 Score=121.42 Aligned_cols=82 Identities=21% Similarity=0.357 Sum_probs=75.2
Q ss_pred cCCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC---CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEE
Q psy4057 6 AHICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL---KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRI 82 (246)
Q Consensus 6 ~~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v 82 (246)
....+.++|||+|||.++++++|+++|++|| |.+|.++++. +++|||||+|.+.++|.+|+ .|||..+.|++|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 87 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRV 87 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEE
Confidence 3556789999999999999999999999998 9999998764 67899999999999999999 89999999999999
Q ss_pred EEccCCc
Q psy4057 83 QYSKTDS 89 (246)
Q Consensus 83 ~~a~~~~ 89 (246)
.++....
T Consensus 88 ~~a~~~~ 94 (103)
T 2dng_A 88 DIAEGRK 94 (103)
T ss_dssp EECCCCC
T ss_pred EEecCCC
Confidence 9987654
No 188
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.78 E-value=3.3e-19 Score=120.94 Aligned_cols=73 Identities=18% Similarity=0.176 Sum_probs=66.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHHccCC--CceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEee
Q psy4057 172 QILFLTNLPEETSEMMLSMLFNQFP--GFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFA 244 (246)
Q Consensus 172 ~~l~v~nL~~~~t~e~l~~~f~~~G--~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~a 244 (246)
.+|||+|||.++|+++|+++|++|| .|.+++++.++ +|||||+|.+.++|.+|++.|||..++ |+.|+|.++
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~-gr~i~V~~~ 80 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELH-GQNPVVTPS 80 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSS-SCCCEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeC-CEEEEEEEC
Confidence 4799999999999999999999999 99999999975 589999999999999999999999999 999999987
Q ss_pred c
Q psy4057 245 K 245 (246)
Q Consensus 245 k 245 (246)
+
T Consensus 81 ~ 81 (90)
T 3p5t_L 81 N 81 (90)
T ss_dssp -
T ss_pred C
Confidence 5
No 189
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.1e-18 Score=118.28 Aligned_cols=76 Identities=22% Similarity=0.333 Sum_probs=71.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCCccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEeecC
Q psy4057 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~ak~ 246 (246)
..++.++|||+|||.++|+++|+++|++||.|.+++++++ ||||+|.+.++|..|+..|||..+. |++|+|.||+.
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~---~afV~f~~~~~a~~A~~~l~g~~~~-g~~l~v~~a~~ 80 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD---YAFVHMEKEADAKAAIAQLNGKEVK-GKRINVELSTK 80 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS---CEEEEESCHHHHHHHHHHHTTCEET-TEECEEEESCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC---EEEEEECCHHHHHHHHHHhCCCEEC-CcEEEEEECCC
Confidence 3457899999999999999999999999999999999854 9999999999999999999999999 99999999863
No 190
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.78 E-value=5.8e-19 Score=121.34 Aligned_cols=79 Identities=25% Similarity=0.460 Sum_probs=71.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHH----HHHccCCCceEEEEeeCC--ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceE
Q psy4057 167 EQPPNQILFLTNLPEETSEMMLS----MLFNQFPGFKEVRLVPNR--HDIAFVEFENEMQSAAAKLALHGFKITPTHAMK 240 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~~t~e~l~----~~f~~~G~i~~v~~~~~~--~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~ 240 (246)
..+++++|||+|||.++++++|+ ++|++||.|.++++.... +|||||+|.+.++|..|+..|||..++ |++|+
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~l~ 82 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFY-DKPMR 82 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEET-TEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEEC-CcEEE
Confidence 45679999999999999999999 999999999999998532 589999999999999999999999999 99999
Q ss_pred EEeecC
Q psy4057 241 ISFAKK 246 (246)
Q Consensus 241 v~~ak~ 246 (246)
|+||+.
T Consensus 83 v~~a~~ 88 (97)
T 1nu4_A 83 IQYAKT 88 (97)
T ss_dssp EEECSS
T ss_pred EEEccC
Confidence 999873
No 191
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.5e-18 Score=118.61 Aligned_cols=77 Identities=30% Similarity=0.433 Sum_probs=70.9
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHccC--CCceEEEEeeCCccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEe
Q psy4057 166 PEQPPNQILFLTNLPEETSEMMLSMLFNQF--PGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISF 243 (246)
Q Consensus 166 ~~~~~~~~l~v~nL~~~~t~e~l~~~f~~~--G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~ 243 (246)
...+++++|||+|||.++|+++|+++|++| |.|.++++. +|||||+|.+.++|..|+..|||..|. |++|+|.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~l~v~~ 85 (99)
T 2cpd_A 10 DTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI---RDYAFVHFSNREDAVEAMKALNGKVLD-GSPIEVTL 85 (99)
T ss_dssp SCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC---SSEEEEEESSHHHHHHHHHHHSSEEET-TEEEEEEC
T ss_pred cccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe---CCeEEEEeCCHHHHHHHHHHhCCCEeC-CcEEEEEE
Confidence 345578999999999999999999999999 999998876 469999999999999999999999999 99999999
Q ss_pred ecC
Q psy4057 244 AKK 246 (246)
Q Consensus 244 ak~ 246 (246)
|+.
T Consensus 86 a~~ 88 (99)
T 2cpd_A 86 AKP 88 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 873
No 192
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=8.4e-19 Score=122.90 Aligned_cols=79 Identities=9% Similarity=0.169 Sum_probs=72.2
Q ss_pred CCCCCcEEEe--cCCChhhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCcc-----CCee
Q psy4057 7 HICVTNFVYV--THISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPF-----YDKP 79 (246)
Q Consensus 7 ~~~~~~~l~V--~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~-----~g~~ 79 (246)
...|+++||| +||+.++++++|+++|++||.|.+|.+.. .||||||+|.+.++|.+|++.|||..+ .|++
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~---~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~ 97 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP---NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 97 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT---TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcE
Confidence 4578899999 77999999999999999999999998865 589999999999999999999999988 6899
Q ss_pred EEEEEccCC
Q psy4057 80 MRIQYSKTD 88 (246)
Q Consensus 80 l~v~~a~~~ 88 (246)
|.|.|+...
T Consensus 98 l~v~~a~~~ 106 (114)
T 2cq2_A 98 LYLNFVEKV 106 (114)
T ss_dssp CEEEEESCC
T ss_pred EEEEecccC
Confidence 999998644
No 193
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=6.6e-19 Score=124.12 Aligned_cols=78 Identities=18% Similarity=0.252 Sum_probs=72.3
Q ss_pred CCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEccC
Q psy4057 8 ICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKT 87 (246)
Q Consensus 8 ~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~~ 87 (246)
..++++|||+|||.++++++|+++|++||.|.+|.+.+ ++|||||+|.+.++|.+|++.|||..+.|++|.|.|+..
T Consensus 7 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~---~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 7 GRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE---GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp SEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS---SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC---CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 34578999999999999999999999999999998864 789999999999999999999999999999999999865
Q ss_pred C
Q psy4057 88 D 88 (246)
Q Consensus 88 ~ 88 (246)
.
T Consensus 84 ~ 84 (111)
T 1whx_A 84 G 84 (111)
T ss_dssp T
T ss_pred C
Confidence 4
No 194
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.3e-19 Score=124.98 Aligned_cols=81 Identities=21% Similarity=0.398 Sum_probs=75.2
Q ss_pred CCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC---CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEc
Q psy4057 9 CVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL---KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYS 85 (246)
Q Consensus 9 ~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a 85 (246)
.++++|||+|||.++++++|+++|++||.|.+|.++++. +++|||||+|.+.++|.+|++.|||..+.|++|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 467899999999999999999999999999999998753 67899999999999999999999999999999999999
Q ss_pred cCCc
Q psy4057 86 KTDS 89 (246)
Q Consensus 86 ~~~~ 89 (246)
....
T Consensus 86 ~~~~ 89 (104)
T 1p1t_A 86 ASEK 89 (104)
T ss_dssp TCTT
T ss_pred CCcc
Confidence 7664
No 195
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.6e-18 Score=121.51 Aligned_cols=78 Identities=18% Similarity=0.196 Sum_probs=73.1
Q ss_pred CCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccCC-----eeEEE
Q psy4057 8 ICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYD-----KPMRI 82 (246)
Q Consensus 8 ~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g-----~~l~v 82 (246)
..+.++|||+|||.++++++|+++|++||.|..|.++.+ |||||+|.+.++|.+|++.|||..+.| ++|+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~----g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V 87 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 87 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT----TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC----CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEE
Confidence 456899999999999999999999999999999999886 999999999999999999999999999 99999
Q ss_pred EEccCCc
Q psy4057 83 QYSKTDS 89 (246)
Q Consensus 83 ~~a~~~~ 89 (246)
.++....
T Consensus 88 ~~a~~~~ 94 (108)
T 1x4c_A 88 KVDGPRS 94 (108)
T ss_dssp EESSCCS
T ss_pred EeCCCCC
Confidence 9987654
No 196
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.77 E-value=9.9e-19 Score=136.48 Aligned_cols=76 Identities=14% Similarity=0.212 Sum_probs=73.3
Q ss_pred CCCcEEEEcCCC-CCCCHHHHHHHHccCCCceEEEEeeCCccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEeec
Q psy4057 169 PPNQILFLTNLP-EETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAK 245 (246)
Q Consensus 169 ~~~~~l~v~nL~-~~~t~e~l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~ak 245 (246)
+++++|||+||| .++|+++|+++|++||.|.+|+++.+++|||||+|.+.++|..|++.|||..+. |++|+|.|||
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~-g~~l~v~~s~ 78 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMF-GQKMNVCVSK 78 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEET-TEECEEEECS
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEEC-CceEEEEEcc
Confidence 468999999999 899999999999999999999999988899999999999999999999999999 9999999986
No 197
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.77 E-value=2.7e-18 Score=125.92 Aligned_cols=80 Identities=26% Similarity=0.498 Sum_probs=74.1
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceE
Q psy4057 166 PEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMK 240 (246)
Q Consensus 166 ~~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~ 240 (246)
....+.++|||+|||.++++++|+++|+.||.|.+|+++.++ +|||||+|.+.++|.+|+..|||..|. |+.|+
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~-g~~l~ 115 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNIL-NKRLK 115 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECS-SCEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC-CeEEE
Confidence 345568999999999999999999999999999999999864 589999999999999999999999999 99999
Q ss_pred EEeecC
Q psy4057 241 ISFAKK 246 (246)
Q Consensus 241 v~~ak~ 246 (246)
|.||+.
T Consensus 116 v~~a~~ 121 (139)
T 1u6f_A 116 VALAAS 121 (139)
T ss_dssp EEESSC
T ss_pred EEECCC
Confidence 999873
No 198
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.77 E-value=3.8e-18 Score=121.73 Aligned_cols=77 Identities=26% Similarity=0.334 Sum_probs=68.7
Q ss_pred CCCCcEE--EEcCCCCCCCHHHHHHHHccCCCceEEEEeeCCccE-EEEEeCCHHHHHHHHHHhCCCccCCC-CceEEEe
Q psy4057 168 QPPNQIL--FLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDI-AFVEFENEMQSAAAKLALHGFKITPT-HAMKISF 243 (246)
Q Consensus 168 ~~~~~~l--~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~~g~-afV~f~~~~~A~~Al~~l~g~~i~~g-~~l~v~~ 243 (246)
.+++.+| ||+||+..+|+++|+++|++||.|.+|++... .|| |||+|.+.++|..|++.|||+.|+++ ++|+|.|
T Consensus 20 ~~ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~ 98 (124)
T 2e5i_A 20 SGGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEY 98 (124)
T ss_dssp CCCCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEEC
T ss_pred CCCCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEE
Confidence 3456664 68999999999999999999999999999875 486 99999999999999999999999832 6999999
Q ss_pred ec
Q psy4057 244 AK 245 (246)
Q Consensus 244 ak 245 (246)
||
T Consensus 99 Ak 100 (124)
T 2e5i_A 99 AR 100 (124)
T ss_dssp CS
T ss_pred ec
Confidence 97
No 199
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.77 E-value=2.6e-19 Score=122.60 Aligned_cols=79 Identities=19% Similarity=0.193 Sum_probs=70.4
Q ss_pred CCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC---CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEE
Q psy4057 8 ICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL---KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQY 84 (246)
Q Consensus 8 ~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 84 (246)
.++.++|||+|||.++++++|+++|++||.|..+.++.+. +++|||||+|.+.++|.+|++.|||..+.|++|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 4567999999999999999999999999999877666543 6789999999999999999999999999999999998
Q ss_pred cc
Q psy4057 85 SK 86 (246)
Q Consensus 85 a~ 86 (246)
+.
T Consensus 92 a~ 93 (95)
T 2ek1_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cc
Confidence 74
No 200
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.77 E-value=1.6e-18 Score=124.94 Aligned_cols=78 Identities=23% Similarity=0.368 Sum_probs=73.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEE
Q psy4057 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKI 241 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v 241 (246)
...++++|||+|||.++|+++|+++|+.||.|..|.++.+. +|||||+|.+.++|..|++.|||..|. |+.|+|
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~-g~~l~v 96 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLM-GQPISV 96 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSS-SSBCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeC-CeEEEE
Confidence 34568999999999999999999999999999999999875 689999999999999999999999999 999999
Q ss_pred Eeec
Q psy4057 242 SFAK 245 (246)
Q Consensus 242 ~~ak 245 (246)
+||+
T Consensus 97 ~~a~ 100 (126)
T 3ex7_B 97 DWCF 100 (126)
T ss_dssp EESE
T ss_pred EEec
Confidence 9986
No 201
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=9.9e-19 Score=120.23 Aligned_cols=80 Identities=18% Similarity=0.280 Sum_probs=72.1
Q ss_pred CCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEcc
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSK 86 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~ 86 (246)
..+.+++|||+|||.++++++|+++|++||.|. +.++. ++++|||||+|.+.++|.+|++.|||..+.|++|+|.++.
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 92 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW-QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALAR 92 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE-ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECC
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc-CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 345589999999999999999999999999996 55544 3789999999999999999999999999999999999987
Q ss_pred CC
Q psy4057 87 TD 88 (246)
Q Consensus 87 ~~ 88 (246)
.+
T Consensus 93 ~~ 94 (97)
T 2e5j_A 93 QQ 94 (97)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 202
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.7e-18 Score=123.07 Aligned_cols=81 Identities=20% Similarity=0.254 Sum_probs=75.1
Q ss_pred CCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC---CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEE
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL---KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~ 83 (246)
...+.++|||+|||.++++++|+++|++||.|.+|.++++. +++|||||+|.+.++|.+|++.+|+ .+.|++|+|.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVN 91 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEE
Confidence 45678999999999999999999999999999999999864 7889999999999999999999998 8999999999
Q ss_pred EccCC
Q psy4057 84 YSKTD 88 (246)
Q Consensus 84 ~a~~~ 88 (246)
++...
T Consensus 92 ~a~~~ 96 (116)
T 2cqd_A 92 LAYLG 96 (116)
T ss_dssp ESTTT
T ss_pred EcccC
Confidence 98654
No 203
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.77 E-value=3.7e-19 Score=123.10 Aligned_cols=80 Identities=13% Similarity=0.253 Sum_probs=70.8
Q ss_pred CCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccC----CCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEE
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKT----LKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRI 82 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~----~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v 82 (246)
...+.++|||+|||.++++++|+++|++|| |.+|.+.++ ++++|||||+|.+.++|.+|+ .|||..+.|+.|+|
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 456789999999999999999999999999 999999865 367899999999999999999 89999999999999
Q ss_pred EEccCC
Q psy4057 83 QYSKTD 88 (246)
Q Consensus 83 ~~a~~~ 88 (246)
.++...
T Consensus 93 ~~a~~~ 98 (100)
T 2j76_E 93 DVADQA 98 (100)
T ss_dssp EECCCS
T ss_pred EeccCC
Confidence 998765
No 204
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=2.2e-18 Score=117.27 Aligned_cols=78 Identities=24% Similarity=0.339 Sum_probs=72.9
Q ss_pred CCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEcc
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSK 86 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~ 86 (246)
...++++|||+|||.++++++|+++|++||.|.+|.+. ++||||+|.+.++|.+|++.|||..+.|++|+|.++.
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 80 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-----KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLST 80 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC-----SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE-----CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 56788999999999999999999999999999999996 4599999999999999999999999999999999997
Q ss_pred CCc
Q psy4057 87 TDS 89 (246)
Q Consensus 87 ~~~ 89 (246)
...
T Consensus 81 ~~~ 83 (92)
T 2dgt_A 81 SRL 83 (92)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 205
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.77 E-value=1.5e-18 Score=120.62 Aligned_cols=75 Identities=27% Similarity=0.465 Sum_probs=70.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCCccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEeec
Q psy4057 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAK 245 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~ak 245 (246)
...+.++|||+|||.++|+++|+++|++||.|..+++++ +||||+|.+.++|.+|++.|||..|. |+.|+|.||+
T Consensus 7 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~---~~afV~f~~~~~a~~A~~~l~g~~~~-g~~l~v~~a~ 81 (103)
T 2dgu_A 7 GMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK---DYAFIHFDERDGAVKAMEEMNGKDLE-GENIEIVFAK 81 (103)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS---SCEEEEESSHHHHHHHHHHHTTEEET-TEEEEEEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC---CEEEEEeCCHHHHHHHHHHHCCCccC-CCEEEEEEcC
Confidence 345789999999999999999999999999999999984 59999999999999999999999999 9999999986
No 206
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=8.8e-19 Score=120.68 Aligned_cols=79 Identities=19% Similarity=0.227 Sum_probs=71.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEE
Q psy4057 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKI 241 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v 241 (246)
..+..++|||+|||.++++++|+++|++||.|..+.++.++ +|||||+|.+.++|.+|++.|||..|+ |++|+|
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~-g~~l~V 89 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIG-SRKVKL 89 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEET-TEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeC-CeEEEE
Confidence 44568999999999999999999999999999877766643 589999999999999999999999999 999999
Q ss_pred EeecC
Q psy4057 242 SFAKK 246 (246)
Q Consensus 242 ~~ak~ 246 (246)
.||+.
T Consensus 90 ~~a~~ 94 (98)
T 2cqp_A 90 VLGSG 94 (98)
T ss_dssp EESSC
T ss_pred EEcCC
Confidence 99863
No 207
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.1e-18 Score=121.60 Aligned_cols=78 Identities=22% Similarity=0.429 Sum_probs=73.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHcc-CCCceEEEEeeCC----ccEEEEEeCCHHHHHHHHHHhCCCc-cCCCCceE
Q psy4057 167 EQPPNQILFLTNLPEETSEMMLSMLFNQ-FPGFKEVRLVPNR----HDIAFVEFENEMQSAAAKLALHGFK-ITPTHAMK 240 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~~t~e~l~~~f~~-~G~i~~v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g~~-i~~g~~l~ 240 (246)
...++++|||+|||.++|+++|+++|++ ||.|.+++++.++ +|||||+|.+.++|..|+..|||.. ++ |++|+
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~-g~~l~ 83 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLG-SKPVR 83 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSS-SSCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccC-CEeEE
Confidence 4457899999999999999999999999 9999999999874 5899999999999999999999999 99 99999
Q ss_pred EEeec
Q psy4057 241 ISFAK 245 (246)
Q Consensus 241 v~~ak 245 (246)
|.||+
T Consensus 84 v~~a~ 88 (104)
T 2dhg_A 84 LSVAI 88 (104)
T ss_dssp CCBCC
T ss_pred EEEcc
Confidence 99986
No 208
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.77 E-value=1.1e-18 Score=127.88 Aligned_cols=82 Identities=23% Similarity=0.364 Sum_probs=75.9
Q ss_pred CCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC---CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEE
Q psy4057 8 ICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL---KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQY 84 (246)
Q Consensus 8 ~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 84 (246)
..+.++|||+|||.++++++|+++|+.||.|.+|.++++. +++|||||+|.+.++|.+|++.|||..+.|++|+|.+
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 4557899999999999999999999999999999998764 5789999999999999999999999999999999999
Q ss_pred ccCCc
Q psy4057 85 SKTDS 89 (246)
Q Consensus 85 a~~~~ 89 (246)
++...
T Consensus 119 a~~~~ 123 (139)
T 1u6f_A 119 AASGH 123 (139)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 97654
No 209
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.1e-18 Score=123.55 Aligned_cols=75 Identities=20% Similarity=0.325 Sum_probs=70.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEe
Q psy4057 169 PPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISF 243 (246)
Q Consensus 169 ~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~ 243 (246)
...++|||+|||.++++++|+++|+.||.|..|+++.++ +|||||+|.+.++|..|+ .|||..|. |+.|+|.|
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~-g~~l~V~~ 100 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLL-GVPIIVQA 100 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEET-TEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeC-CeEEEEEe
Confidence 357899999999999999999999999999999999754 589999999999999999 99999999 99999999
Q ss_pred ec
Q psy4057 244 AK 245 (246)
Q Consensus 244 ak 245 (246)
|+
T Consensus 101 a~ 102 (114)
T 2cq4_A 101 SQ 102 (114)
T ss_dssp HH
T ss_pred cC
Confidence 86
No 210
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=7e-19 Score=122.76 Aligned_cols=83 Identities=20% Similarity=0.313 Sum_probs=76.6
Q ss_pred cCCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC---CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEE
Q psy4057 6 AHICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL---KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRI 82 (246)
Q Consensus 6 ~~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v 82 (246)
....+.++|||+|||.++++++|+++|++||.|.+|.++++. +++|||||+|.+.++|.+|++. |+..+.|++|.|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V 89 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDP 89 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEE
Confidence 356788999999999999999999999999999999998863 6789999999999999999998 999999999999
Q ss_pred EEccCCc
Q psy4057 83 QYSKTDS 89 (246)
Q Consensus 83 ~~a~~~~ 89 (246)
.++..+.
T Consensus 90 ~~a~~~~ 96 (105)
T 2dh8_A 90 KPCTPRG 96 (105)
T ss_dssp CCSCCSS
T ss_pred EEccCCC
Confidence 9987654
No 211
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.77 E-value=1.3e-18 Score=122.20 Aligned_cols=84 Identities=17% Similarity=0.248 Sum_probs=71.5
Q ss_pred ccCCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccC---CCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEE
Q psy4057 5 LAHICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKT---LKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMR 81 (246)
Q Consensus 5 ~~~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~---~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~ 81 (246)
+....++++|||+|||.++++++|+++|++||.|.+|.++++ ++++|||||+|.+.++|.+|++.+ +..+.|++|+
T Consensus 19 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~ 97 (109)
T 2rs2_A 19 SHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTID 97 (109)
T ss_dssp -------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEE
Confidence 345667899999999999999999999999999999999876 478999999999999999999976 5899999999
Q ss_pred EEEccCCc
Q psy4057 82 IQYSKTDS 89 (246)
Q Consensus 82 v~~a~~~~ 89 (246)
|.++..+.
T Consensus 98 V~~a~~~~ 105 (109)
T 2rs2_A 98 PKVAFPRR 105 (109)
T ss_dssp EEECCCCC
T ss_pred EEEccCCC
Confidence 99987553
No 212
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.77 E-value=1.8e-18 Score=124.39 Aligned_cols=83 Identities=20% Similarity=0.307 Sum_probs=76.3
Q ss_pred CCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC--CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEE
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL--KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQY 84 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~--~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 84 (246)
...++++|||+|||.++++++|+++|++||.|.+|.+..+. +++|||||+|.+.++|.+|++.|||..+.|++|+|.+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 34567899999999999999999999999999999998764 6789999999999999999999999999999999999
Q ss_pred ccCCc
Q psy4057 85 SKTDS 89 (246)
Q Consensus 85 a~~~~ 89 (246)
|....
T Consensus 111 a~~~~ 115 (124)
T 2kt5_A 111 VASQI 115 (124)
T ss_dssp ECCTT
T ss_pred eCCCC
Confidence 87653
No 213
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=9.5e-19 Score=123.35 Aligned_cols=77 Identities=13% Similarity=0.243 Sum_probs=71.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHH---HHHccCCCceEEEEeeCC--------ccEEEEEeCCHHHHHHHHHHhCCCccCCC
Q psy4057 168 QPPNQILFLTNLPEETSEMMLS---MLFNQFPGFKEVRLVPNR--------HDIAFVEFENEMQSAAAKLALHGFKITPT 236 (246)
Q Consensus 168 ~~~~~~l~v~nL~~~~t~e~l~---~~f~~~G~i~~v~~~~~~--------~g~afV~f~~~~~A~~Al~~l~g~~i~~g 236 (246)
....++|||+|||.++++++|+ ++|++||.|.+++++.+. +|||||+|.+.++|.+|++.|||..|+ |
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~-g 90 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVD-G 90 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEET-T
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEEC-C
Confidence 3458899999999999999999 999999999999999865 279999999999999999999999999 9
Q ss_pred CceEEEeec
Q psy4057 237 HAMKISFAK 245 (246)
Q Consensus 237 ~~l~v~~ak 245 (246)
++|+|.||+
T Consensus 91 r~l~V~~a~ 99 (111)
T 2cpi_A 91 RTLKASLGT 99 (111)
T ss_dssp EEEEEESCC
T ss_pred EEEEEEecc
Confidence 999999986
No 214
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.77 E-value=4.9e-19 Score=122.46 Aligned_cols=77 Identities=22% Similarity=0.373 Sum_probs=68.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC------ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceE
Q psy4057 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR------HDIAFVEFENEMQSAAAKLALHGFKITPTHAMK 240 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~------~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~ 240 (246)
.....++|||+|||.++++++|+++|+.|| |.+++++.++ +|||||+|.+.++|.+|+ .|||..|. |+.|+
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~-g~~l~ 91 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLG-NRRIR 91 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBT-TBCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEEC-CeEEE
Confidence 445699999999999999999999999999 9999999875 589999999999999999 89999999 99999
Q ss_pred EEeecC
Q psy4057 241 ISFAKK 246 (246)
Q Consensus 241 v~~ak~ 246 (246)
|.||+.
T Consensus 92 V~~a~~ 97 (100)
T 2j76_E 92 VDVADQ 97 (100)
T ss_dssp CEECCC
T ss_pred EEeccC
Confidence 999873
No 215
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.77 E-value=2.4e-18 Score=119.60 Aligned_cols=78 Identities=24% Similarity=0.427 Sum_probs=72.6
Q ss_pred CCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEcc
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSK 86 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~ 86 (246)
...++++|||+|||.++++++|+++|++||.|.+|.++ ++||||+|.+.++|.+|++.|||..+.|++|.|.++.
T Consensus 7 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 81 (103)
T 2dgu_A 7 GMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-----KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAK 81 (103)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-----SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-----CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcC
Confidence 45678999999999999999999999999999999885 5799999999999999999999999999999999997
Q ss_pred CCc
Q psy4057 87 TDS 89 (246)
Q Consensus 87 ~~~ 89 (246)
...
T Consensus 82 ~~~ 84 (103)
T 2dgu_A 82 PPD 84 (103)
T ss_dssp CCC
T ss_pred CCc
Confidence 654
No 216
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.3e-18 Score=121.21 Aligned_cols=77 Identities=23% Similarity=0.391 Sum_probs=72.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEe
Q psy4057 169 PPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISF 243 (246)
Q Consensus 169 ~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~ 243 (246)
.+.++|||+|||.++++++|+++|+.||.|..++++.++ +|||||+|.+.++|..|++.|||..+. |+.|+|.|
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~-g~~l~v~~ 84 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFS-GRALRVDN 84 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCS-SSCBEEEE
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeC-CcEEEEEe
Confidence 357899999999999999999999999999999999875 589999999999999999999999999 99999999
Q ss_pred ecC
Q psy4057 244 AKK 246 (246)
Q Consensus 244 ak~ 246 (246)
|+.
T Consensus 85 a~~ 87 (104)
T 1p1t_A 85 AAS 87 (104)
T ss_dssp TTC
T ss_pred CCC
Confidence 863
No 217
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.4e-18 Score=123.23 Aligned_cols=83 Identities=25% Similarity=0.460 Sum_probs=74.7
Q ss_pred cCCCCCcEEEecCCChhhhHHHHHHHhhccCCe----eEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEE
Q psy4057 6 AHICVTNFVYVTHISSTDLKKSLYAIFSQFGQI----MDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMR 81 (246)
Q Consensus 6 ~~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i----~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~ 81 (246)
...+++++|||+|||.++++++|+++|++||.| ..+.+. +++++|||||+|.+.++|.+|++.|||..+.|++|+
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~-~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 98 (115)
T 2cpx_A 20 NPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM-TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILV 98 (115)
T ss_dssp CCCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE-CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC-CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 345678999999999999999999999999998 555554 668999999999999999999999999999999999
Q ss_pred EEEccCCc
Q psy4057 82 IQYSKTDS 89 (246)
Q Consensus 82 v~~a~~~~ 89 (246)
|.++....
T Consensus 99 v~~a~~~~ 106 (115)
T 2cpx_A 99 IEFGKNKK 106 (115)
T ss_dssp EEECCCCS
T ss_pred EEEccCCC
Confidence 99997654
No 218
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.77 E-value=1.3e-18 Score=129.90 Aligned_cols=79 Identities=15% Similarity=0.202 Sum_probs=72.5
Q ss_pred CCcEEEecCCChhhhHHHHHHHhhccC--CeeEEEEccC---CCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEE
Q psy4057 10 VTNFVYVTHISSTDLKKSLYAIFSQFG--QIMDIVALKT---LKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQY 84 (246)
Q Consensus 10 ~~~~l~V~nl~~~~~e~~l~~~F~~fG--~i~~v~~~~~---~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 84 (246)
..++|||+|||.++++++|+++|++|| .|.+|.++.+ ++++|||||+|.+.++|.+|++.|||..+.|++|+|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 457999999999999999999999999 9999999876 47899999999999999999999999999999999999
Q ss_pred ccCC
Q psy4057 85 SKTD 88 (246)
Q Consensus 85 a~~~ 88 (246)
+..+
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 8543
No 219
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=5e-19 Score=121.92 Aligned_cols=81 Identities=19% Similarity=0.189 Sum_probs=72.8
Q ss_pred CCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccC---CCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEE
Q psy4057 8 ICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKT---LKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQY 84 (246)
Q Consensus 8 ~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~---~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 84 (246)
.++.++|||+|||.++++++|+++|++||.|..+.++.+ ++++|||||+|.+.++|++|++.|||..+.|++|+|.+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 456789999999999999999999999999987666554 36789999999999999999999999999999999999
Q ss_pred ccCC
Q psy4057 85 SKTD 88 (246)
Q Consensus 85 a~~~ 88 (246)
+...
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8654
No 220
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.77 E-value=1.4e-18 Score=117.50 Aligned_cols=74 Identities=14% Similarity=0.245 Sum_probs=70.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEee
Q psy4057 170 PNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFA 244 (246)
Q Consensus 170 ~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~a 244 (246)
..++|||+|||.++++++|+++|++||.|.+++++.++ +|||||+|.+.++|.+|+ .|||..+. |+.|+|.+|
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~-g~~l~V~~a 82 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFR-GRQIKVIPK 82 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEET-TEECEEEET
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEEC-CcEEEEEEc
Confidence 36899999999999999999999999999999999875 689999999999999999 99999999 999999998
Q ss_pred c
Q psy4057 245 K 245 (246)
Q Consensus 245 k 245 (246)
+
T Consensus 83 ~ 83 (89)
T 3ucg_A 83 R 83 (89)
T ss_dssp T
T ss_pred c
Confidence 7
No 221
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.77 E-value=3.3e-18 Score=118.90 Aligned_cols=76 Identities=21% Similarity=0.419 Sum_probs=70.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEE
Q psy4057 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKI 241 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v 241 (246)
...+.++|||+|||.++++++|+++|+.|| |.+|+++.++ +|||||+|.+.++|.+|+ .|||..|. |++|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~-g~~l~V 87 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLG-DRSLRV 87 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEET-TEECEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeEC-CeEEEE
Confidence 445689999999999999999999999997 9999999875 589999999999999999 89999999 999999
Q ss_pred Eeec
Q psy4057 242 SFAK 245 (246)
Q Consensus 242 ~~ak 245 (246)
.||+
T Consensus 88 ~~a~ 91 (103)
T 2dng_A 88 DIAE 91 (103)
T ss_dssp EECC
T ss_pred EEec
Confidence 9986
No 222
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.9e-18 Score=121.37 Aligned_cols=83 Identities=13% Similarity=0.306 Sum_probs=75.2
Q ss_pred CCCCCcEEEecCCChhhhHHHHHHHhhccCC-eeEEEEc-cCC---CCccEEEEEEcCHHHHHHHHHHhc--CCccCCee
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLYAIFSQFGQ-IMDIVAL-KTL---KMRGQAFVIFKEIASATNALRSMQ--GFPFYDKP 79 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~-i~~v~~~-~~~---~~kg~aFV~f~~~~~A~~Ai~~ln--g~~~~g~~ 79 (246)
..+++++|||+|||.++++++|+++|++||. |.+|.++ .+. +++|||||+|.+.++|..|++.|| +..+.|++
T Consensus 4 ~s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~ 83 (109)
T 2dis_A 4 GSSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQ 83 (109)
T ss_dssp CCCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBC
T ss_pred cccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCe
Confidence 4567899999999999999999999999998 9999988 443 688999999999999999999996 59999999
Q ss_pred EEEEEccCCc
Q psy4057 80 MRIQYSKTDS 89 (246)
Q Consensus 80 l~v~~a~~~~ 89 (246)
|+|.++..+.
T Consensus 84 l~V~~a~~~~ 93 (109)
T 2dis_A 84 IAVDWAEPEI 93 (109)
T ss_dssp CEEEESCSSC
T ss_pred EEEEEcCCCC
Confidence 9999997654
No 223
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.77 E-value=2.4e-18 Score=127.82 Aligned_cols=75 Identities=20% Similarity=0.309 Sum_probs=68.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-ccEEEEEeCCHHHHHHHHHHhCCCccCC-CCceEEEeec
Q psy4057 171 NQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-HDIAFVEFENEMQSAAAKLALHGFKITP-THAMKISFAK 245 (246)
Q Consensus 171 ~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-~g~afV~f~~~~~A~~Al~~l~g~~i~~-g~~l~v~~ak 245 (246)
...|||+||++.+|+++|+++|++||.|++|++..++ +|||||+|.+.++|..|++.|||+.|++ +++|+|+|||
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 4557899999999999999999999999999998665 5799999999999999999999999972 4999999997
No 224
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.77 E-value=1.6e-18 Score=128.80 Aligned_cols=80 Identities=23% Similarity=0.366 Sum_probs=75.4
Q ss_pred CCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEcc
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSK 86 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~ 86 (246)
...+.++|||+|||.++++++|+++|++||.|.+|.++++ ++|||||+|.+.++|.+|++.|||..+.|++|+|.++.
T Consensus 69 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 146 (150)
T 2i2y_A 69 SCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN--PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSN 146 (150)
T ss_dssp SSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS--SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC--CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcC
Confidence 4567899999999999999999999999999999999887 79999999999999999999999999999999999987
Q ss_pred CC
Q psy4057 87 TD 88 (246)
Q Consensus 87 ~~ 88 (246)
++
T Consensus 147 ~~ 148 (150)
T 2i2y_A 147 GE 148 (150)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 225
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.8e-18 Score=121.88 Aligned_cols=78 Identities=18% Similarity=0.296 Sum_probs=72.6
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceE
Q psy4057 166 PEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMK 240 (246)
Q Consensus 166 ~~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~ 240 (246)
....+.++|||+|||.++|+++|+++|++||.|..|+++.++ +|||||+|.+.++|.+|+..||+ .|. |++|+
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~-g~~l~ 89 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IID-GRKAN 89 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EET-TEECE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCC-CEEEE
Confidence 455679999999999999999999999999999999999874 58999999999999999999999 898 99999
Q ss_pred EEeec
Q psy4057 241 ISFAK 245 (246)
Q Consensus 241 v~~ak 245 (246)
|.||+
T Consensus 90 V~~a~ 94 (116)
T 2cqd_A 90 VNLAY 94 (116)
T ss_dssp EEEST
T ss_pred EEEcc
Confidence 99985
No 226
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4.1e-18 Score=117.53 Aligned_cols=78 Identities=18% Similarity=0.370 Sum_probs=72.4
Q ss_pred CCCCCcEEEecCCChhhhHHHHHHHhhcc--CCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEE
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLYAIFSQF--GQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQY 84 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~~~F~~f--G~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 84 (246)
..+++++|||+|||.++++++|+++|++| |.|.+|.+ .+|||||+|.+.++|.+|++.|||..+.|++|+|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKK-----IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTL 85 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEE-----CSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE-----eCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 45678999999999999999999999999 99999987 468999999999999999999999999999999999
Q ss_pred ccCCc
Q psy4057 85 SKTDS 89 (246)
Q Consensus 85 a~~~~ 89 (246)
++...
T Consensus 86 a~~~~ 90 (99)
T 2cpd_A 86 AKPVD 90 (99)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87654
No 227
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.76 E-value=5.9e-19 Score=115.46 Aligned_cols=72 Identities=18% Similarity=0.278 Sum_probs=67.7
Q ss_pred EEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC---CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEc
Q psy4057 13 FVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL---KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYS 85 (246)
Q Consensus 13 ~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a 85 (246)
+|||+|||.++++++|+++|++||.|.+|.++++. +++|||||+|.+.++|++|++ +||..+.|++|+|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 58999999999999999999999999999998753 788999999999999999998 9999999999999875
No 228
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.76 E-value=2e-18 Score=126.71 Aligned_cols=79 Identities=28% Similarity=0.390 Sum_probs=73.4
Q ss_pred CCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccC---CCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEE
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKT---LKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~---~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~ 83 (246)
..+++++|||+|||.++++++|+++|++||.|.+|.++++ ++++|||||+|.+.++|.+|++.|||..+.|++|+|.
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 4567899999999999999999999999999999999876 4789999999999999999999999999999999998
Q ss_pred Ec
Q psy4057 84 YS 85 (246)
Q Consensus 84 ~a 85 (246)
+|
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 75
No 229
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.76 E-value=6.1e-19 Score=128.03 Aligned_cols=80 Identities=15% Similarity=0.316 Sum_probs=74.0
Q ss_pred CCCCcEEEecCCChhhhHHHHHHHhhccCCeeE--EEEccCC---CCccEEEEEEcCHHHHHHHHHHhcCC----ccCCe
Q psy4057 8 ICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMD--IVALKTL---KMRGQAFVIFKEIASATNALRSMQGF----PFYDK 78 (246)
Q Consensus 8 ~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~--v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng~----~~~g~ 78 (246)
..++++|||+|||.++++++|+++|++||.|.. |+++++. +++|||||+|.+. +|.+|+..|||. .+.|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 457899999999999999999999999999976 8888765 7899999999999 999999999999 99999
Q ss_pred eEEEEEccCC
Q psy4057 79 PMRIQYSKTD 88 (246)
Q Consensus 79 ~l~v~~a~~~ 88 (246)
+|+|.++...
T Consensus 99 ~l~V~~a~~~ 108 (131)
T 2m2b_A 99 TINVEFAKGS 108 (131)
T ss_dssp CCCCEECCCS
T ss_pred EEEEEECCCC
Confidence 9999998765
No 230
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.76 E-value=1.4e-17 Score=119.62 Aligned_cols=78 Identities=22% Similarity=0.273 Sum_probs=73.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEE
Q psy4057 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKIS 242 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~ 242 (246)
...++++|||+|||.++++++|+++|+.||.|.++++..++ +|||||+|.+.++|..|+..|||..++ |++|+|.
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~-g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLD-GRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESS-SCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEEC-CcEEEEE
Confidence 44568999999999999999999999999999999999874 589999999999999999999999999 9999999
Q ss_pred eec
Q psy4057 243 FAK 245 (246)
Q Consensus 243 ~ak 245 (246)
||+
T Consensus 110 ~a~ 112 (124)
T 2kt5_A 110 LVA 112 (124)
T ss_dssp EEC
T ss_pred EeC
Confidence 986
No 231
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.76 E-value=6.8e-19 Score=120.78 Aligned_cols=82 Identities=18% Similarity=0.246 Sum_probs=74.6
Q ss_pred cCCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEc
Q psy4057 6 AHICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYS 85 (246)
Q Consensus 6 ~~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a 85 (246)
....++++|||+|||.++++++|+++|++||.|..+ ..+++++|||||+|.+.++|.+|++.|||..+.|++|+|.++
T Consensus 11 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~--~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 88 (96)
T 1fjc_A 11 KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 88 (96)
T ss_dssp STTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE--EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEEC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe--CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 345678999999999999999999999999998877 456688999999999999999999999999999999999998
Q ss_pred cCCc
Q psy4057 86 KTDS 89 (246)
Q Consensus 86 ~~~~ 89 (246)
..+.
T Consensus 89 ~~~~ 92 (96)
T 1fjc_A 89 GEKG 92 (96)
T ss_dssp SSSC
T ss_pred CCCC
Confidence 6653
No 232
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.76 E-value=1.1e-18 Score=128.57 Aligned_cols=82 Identities=26% Similarity=0.444 Sum_probs=75.2
Q ss_pred CCCCCcEEEecCCChhhhHHHHHHHhhccCCeeE--------EEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccCCe
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMD--------IVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~--------v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~ 78 (246)
...++++|||+|||.++++++|+++|++||.|.. +.+..+++++|||||+|.+.++|.+|++.|||..+.|+
T Consensus 41 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 120 (143)
T 3egn_A 41 PGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGK 120 (143)
T ss_dssp CCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 4568899999999999999999999999999876 55566789999999999999999999999999999999
Q ss_pred eEEEEEccCC
Q psy4057 79 PMRIQYSKTD 88 (246)
Q Consensus 79 ~l~v~~a~~~ 88 (246)
+|.|.+++..
T Consensus 121 ~l~V~~a~~~ 130 (143)
T 3egn_A 121 PMVVQFARSA 130 (143)
T ss_dssp ECEEEECCCS
T ss_pred EEEEEECCCC
Confidence 9999998654
No 233
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.6e-18 Score=118.90 Aligned_cols=75 Identities=23% Similarity=0.379 Sum_probs=70.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC------ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEE
Q psy4057 168 QPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR------HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKI 241 (246)
Q Consensus 168 ~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~------~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v 241 (246)
.++.++|||+|||.++++++|+++|+.|| |..|+++.++ +|||||+|.+.++|.+|+ .|||..|. |+.|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~-g~~l~V 88 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLG-NKRIRV 88 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEET-TEECEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeC-CcEEEE
Confidence 45689999999999999999999999999 9999999864 579999999999999999 99999999 999999
Q ss_pred Eeec
Q psy4057 242 SFAK 245 (246)
Q Consensus 242 ~~ak 245 (246)
.||+
T Consensus 89 ~~a~ 92 (104)
T 1wi8_A 89 DVAD 92 (104)
T ss_dssp EECC
T ss_pred EEcc
Confidence 9986
No 234
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.76 E-value=3.3e-18 Score=127.90 Aligned_cols=82 Identities=24% Similarity=0.344 Sum_probs=76.2
Q ss_pred CCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC---CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEE
Q psy4057 8 ICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL---KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQY 84 (246)
Q Consensus 8 ~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 84 (246)
..++++|||+|||.++++++|+++|++||.|.+|.++.+. .++|||||+|.+.++|.+|++.||+..+.|++|+|.+
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 4578999999999999999999999999999999998764 6789999999999999999999999999999999999
Q ss_pred ccCCc
Q psy4057 85 SKTDS 89 (246)
Q Consensus 85 a~~~~ 89 (246)
+....
T Consensus 116 a~~~~ 120 (156)
T 1h2v_Z 116 DAGFK 120 (156)
T ss_dssp ESCCC
T ss_pred CCCCC
Confidence 97643
No 235
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=2e-18 Score=119.52 Aligned_cols=82 Identities=17% Similarity=0.215 Sum_probs=71.7
Q ss_pred CCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEcc
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSK 86 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~ 86 (246)
...++++|||+|||.++++++|+++|++||.|.-+ ...+++++|||||+|.+.++|++|++.|||..+.|++|+|.++.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~-~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 89 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFIKVP-QNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQG 89 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEEECC-BCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEE-ECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcC
Confidence 45678999999999999999999999999988322 11345789999999999999999999999999999999999987
Q ss_pred CCc
Q psy4057 87 TDS 89 (246)
Q Consensus 87 ~~~ 89 (246)
.+.
T Consensus 90 ~~~ 92 (101)
T 2fc9_A 90 PRG 92 (101)
T ss_dssp SCC
T ss_pred CCC
Confidence 653
No 236
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=4.8e-18 Score=116.52 Aligned_cols=78 Identities=17% Similarity=0.292 Sum_probs=71.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEE-EeeCC-ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEee
Q psy4057 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVR-LVPNR-HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFA 244 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~-~~~~~-~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~a 244 (246)
....+++|||+|||.++++++|+++|++||.|..++ ++.++ .+.|||+|.+.++|..|+..|||..+. |++|+|.||
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~-g~~l~V~~a 89 (96)
T 2e44_A 11 KRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLE-NFTLKVAYI 89 (96)
T ss_dssp CCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCS-SCBCEEEEC
T ss_pred CCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEEC-CcEEEEEEc
Confidence 344689999999999999999999999999999995 77765 456999999999999999999999999 999999998
Q ss_pred c
Q psy4057 245 K 245 (246)
Q Consensus 245 k 245 (246)
+
T Consensus 90 ~ 90 (96)
T 2e44_A 90 P 90 (96)
T ss_dssp C
T ss_pred C
Confidence 6
No 237
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=5.3e-19 Score=118.56 Aligned_cols=76 Identities=17% Similarity=0.242 Sum_probs=71.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEe
Q psy4057 169 PPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISF 243 (246)
Q Consensus 169 ~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~ 243 (246)
+++++|||+|||.++++++|+++|++||.|.+++++.++ +|||||+|.+.++|..|++.|||..+. |+.|++++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~-g~~~~~~~ 81 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQ-AQMAKQSG 81 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCC-EESCCSSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEe-eEEEeecC
Confidence 468999999999999999999999999999999999874 589999999999999999999999999 99999988
Q ss_pred ec
Q psy4057 244 AK 245 (246)
Q Consensus 244 ak 245 (246)
++
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 238
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.76 E-value=5.4e-18 Score=114.07 Aligned_cols=76 Identities=13% Similarity=0.193 Sum_probs=69.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEE
Q psy4057 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKI 241 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v 241 (246)
...+.++|||+|||.++++++|+++|++||.|..++++.++ +|||||+|.+.++|.+|++ ++|..++ |+.|+|
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~-g~~i~v 84 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLD-GRVIDP 84 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEET-TEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEEC-CEEEEE
Confidence 45578999999999999999999999999999999999875 5899999999999999995 5888899 999999
Q ss_pred Eee
Q psy4057 242 SFA 244 (246)
Q Consensus 242 ~~a 244 (246)
.+|
T Consensus 85 ~~A 87 (87)
T 3s7r_A 85 KKA 87 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 986
No 239
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.3e-18 Score=121.94 Aligned_cols=78 Identities=23% Similarity=0.389 Sum_probs=72.4
Q ss_pred CCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC---CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEcc
Q psy4057 10 VTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL---KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSK 86 (246)
Q Consensus 10 ~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~ 86 (246)
.+++|||+|||.++++++|+++|++||.|.+|.++.+. +++|||||+|.+.++|.+|+ .|||..+.|++|+|.++.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 35799999999999999999999999999999998764 67899999999999999999 899999999999999986
Q ss_pred CC
Q psy4057 87 TD 88 (246)
Q Consensus 87 ~~ 88 (246)
..
T Consensus 103 ~~ 104 (114)
T 2cq4_A 103 AE 104 (114)
T ss_dssp HH
T ss_pred CC
Confidence 43
No 240
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=2.5e-18 Score=119.28 Aligned_cols=84 Identities=15% Similarity=0.183 Sum_probs=72.9
Q ss_pred CCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEcc
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSK 86 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~ 86 (246)
...++++|||+|||.++++++|+++|+.|+.|..+....+++++|||||+|.+.++|.+|++.|||..+.|++|+|.+++
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 90 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 90 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence 45778999999999999999999999988755444333445788999999999999999999999999999999999997
Q ss_pred CCcc
Q psy4057 87 TDSD 90 (246)
Q Consensus 87 ~~~~ 90 (246)
.+..
T Consensus 91 ~~~~ 94 (102)
T 2fc8_A 91 PKGE 94 (102)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 6643
No 241
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.76 E-value=1.1e-18 Score=119.56 Aligned_cols=78 Identities=19% Similarity=0.213 Sum_probs=69.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEE
Q psy4057 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKI 241 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v 241 (246)
..++.++|||+|||.++++++|+++|++||.|..+.++.++ +|||||+|.+.++|.+|++.|||..|. |++|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~-gr~l~v 89 (95)
T 2ek1_A 11 GKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIG-SRKVKL 89 (95)
T ss_dssp ----CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEET-TEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeEC-CcEEEE
Confidence 34467999999999999999999999999999877777643 589999999999999999999999999 999999
Q ss_pred Eeec
Q psy4057 242 SFAK 245 (246)
Q Consensus 242 ~~ak 245 (246)
.+++
T Consensus 90 ~~a~ 93 (95)
T 2ek1_A 90 SGPS 93 (95)
T ss_dssp ECCC
T ss_pred Eecc
Confidence 9985
No 242
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.75 E-value=3.3e-18 Score=128.17 Aligned_cols=81 Identities=21% Similarity=0.379 Sum_probs=75.8
Q ss_pred CCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccC---CCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEE
Q psy4057 8 ICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKT---LKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQY 84 (246)
Q Consensus 8 ~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~---~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 84 (246)
..+.++|||+|||.++++++|+++|++||.|.+|.++++ ++++|||||+|.+.++|.+|++.|||..+.|++|+|.+
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 146 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 146 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 456899999999999999999999999999999999876 47899999999999999999999999999999999999
Q ss_pred ccCC
Q psy4057 85 SKTD 88 (246)
Q Consensus 85 a~~~ 88 (246)
+...
T Consensus 147 a~~~ 150 (158)
T 2kn4_A 147 ARYG 150 (158)
T ss_dssp ECCS
T ss_pred CCCC
Confidence 9765
No 243
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.75 E-value=4.6e-19 Score=153.00 Aligned_cols=77 Identities=22% Similarity=0.339 Sum_probs=72.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEE
Q psy4057 168 QPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKIS 242 (246)
Q Consensus 168 ~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~ 242 (246)
..+.++|||+|||..+|+++|..+|+.||.|..|.|+.+. +|||||+|.+.++|..||..|||..|. |+.|.|.
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~-gr~i~V~ 177 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKID-GRRVLVD 177 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEEC-CEEEEEE
Confidence 3467899999999999999999999999999999999863 689999999999999999999999999 9999999
Q ss_pred eec
Q psy4057 243 FAK 245 (246)
Q Consensus 243 ~ak 245 (246)
||+
T Consensus 178 ~a~ 180 (437)
T 3pgw_S 178 VER 180 (437)
T ss_pred EeC
Confidence 986
No 244
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.75 E-value=3.4e-18 Score=127.54 Aligned_cols=75 Identities=15% Similarity=0.133 Sum_probs=70.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHccCC--CceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEE
Q psy4057 170 PNQILFLTNLPEETSEMMLSMLFNQFP--GFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKIS 242 (246)
Q Consensus 170 ~~~~l~v~nL~~~~t~e~l~~~f~~~G--~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~ 242 (246)
..++|||+|||.++|+++|+++|+.|| .|.+|+++.++ +|||||+|.+.++|.+|+..|||..|+ |+.|+|.
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~-Gr~l~V~ 132 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLN-GEKVDVR 132 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEET-TEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC-CeEeEEE
Confidence 578999999999999999999999999 99999999875 589999999999999999999999999 9999999
Q ss_pred eec
Q psy4057 243 FAK 245 (246)
Q Consensus 243 ~ak 245 (246)
+|+
T Consensus 133 ~a~ 135 (156)
T 3n9u_C 133 PAT 135 (156)
T ss_dssp ECC
T ss_pred EcC
Confidence 985
No 245
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.75 E-value=4e-19 Score=120.47 Aligned_cols=77 Identities=19% Similarity=0.422 Sum_probs=69.9
Q ss_pred cEEEecCCChhhhHHHHHHHhhccCCeeEEEEccC---CCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEccCC
Q psy4057 12 NFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKT---LKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTD 88 (246)
Q Consensus 12 ~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~---~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~~~ 88 (246)
++|||+|||.++++++|+++|++||.|.+|.+.++ ++++|||||+|.+.+ |.+|+..|||..+.|++|+|.+|...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999876 477999999999999 99999999999999999999998765
Q ss_pred c
Q psy4057 89 S 89 (246)
Q Consensus 89 ~ 89 (246)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 246
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4e-18 Score=120.71 Aligned_cols=82 Identities=15% Similarity=0.278 Sum_probs=74.5
Q ss_pred CCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC--CCccEEEEEEcCHHHHHHHHHHhcCCcc--------C
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL--KMRGQAFVIFKEIASATNALRSMQGFPF--------Y 76 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~--~~kg~aFV~f~~~~~A~~Ai~~lng~~~--------~ 76 (246)
...+.++|||+|||.++++++|+++|++||.|.+|.++++. +++|||||+|.+.++|.+|++.|||..+ .
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 34567999999999999999999999999999999998764 6789999999999999999999999998 6
Q ss_pred CeeEEEEEccCC
Q psy4057 77 DKPMRIQYSKTD 88 (246)
Q Consensus 77 g~~l~v~~a~~~ 88 (246)
|++|.|.|+.+.
T Consensus 101 ~~~l~v~~a~p~ 112 (114)
T 1x5o_A 101 TEPLLCKFSGPS 112 (114)
T ss_dssp SSCBEEEECCCS
T ss_pred CCceeEEccCCC
Confidence 888999998643
No 247
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.75 E-value=3e-18 Score=120.59 Aligned_cols=76 Identities=18% Similarity=0.334 Sum_probs=71.1
Q ss_pred CCCCcEEEecCCChh-hhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEcc
Q psy4057 8 ICVTNFVYVTHISST-DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSK 86 (246)
Q Consensus 8 ~~~~~~l~V~nl~~~-~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~ 86 (246)
..++++|||+|||.+ +++++|+++|++||.|.+|.+ ++|||||+|.+.++|.+|++.|||..+.|++|+|.++.
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 98 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-----HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAG 98 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-----ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESC
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-----eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 345689999999999 999999999999999999988 68999999999999999999999999999999999987
Q ss_pred CC
Q psy4057 87 TD 88 (246)
Q Consensus 87 ~~ 88 (246)
..
T Consensus 99 ~~ 100 (110)
T 1wf1_A 99 EP 100 (110)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 248
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.75 E-value=6.5e-18 Score=123.89 Aligned_cols=79 Identities=22% Similarity=0.369 Sum_probs=72.7
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCce
Q psy4057 165 VPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHAM 239 (246)
Q Consensus 165 ~~~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l 239 (246)
....++.++|||+|||.++++++|+++|++||.|..++++.++ +|||||+|.+.++|.+|++.|||..|. |++|
T Consensus 57 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~-g~~l 135 (140)
T 2ku7_A 57 GGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF-GRTI 135 (140)
T ss_dssp CSSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEET-TEEE
T ss_pred CCCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEEC-CEEE
Confidence 3455679999999999999999999999999999999998873 589999999999999999999999999 9999
Q ss_pred EEEee
Q psy4057 240 KISFA 244 (246)
Q Consensus 240 ~v~~a 244 (246)
+|.||
T Consensus 136 ~v~~A 140 (140)
T 2ku7_A 136 RVNLA 140 (140)
T ss_dssp EEEC-
T ss_pred EEEeC
Confidence 99987
No 249
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.75 E-value=4.3e-18 Score=119.75 Aligned_cols=74 Identities=22% Similarity=0.372 Sum_probs=69.6
Q ss_pred CCCCcEEEEcCCCCC-CCHHHHHHHHccCCCceEEEEeeCCccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEeec
Q psy4057 168 QPPNQILFLTNLPEE-TSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAK 245 (246)
Q Consensus 168 ~~~~~~l~v~nL~~~-~t~e~l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~ak 245 (246)
.+++++|||+|||.. +++++|+++|++||.|..+++ .+|||||+|.+.++|..|++.|||..++ |+.|+|.||+
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~l~V~~a~ 98 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV---HKGYAFVQYSNERHARAAVLGENGRVLA-GQTLDINMAG 98 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE---ETTEEEEECSSSHHHHHHHHHHTTCEET-TEECCEEESC
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCEEC-CeEEEEEECC
Confidence 445789999999999 999999999999999999999 4589999999999999999999999999 9999999987
No 250
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.1e-17 Score=118.37 Aligned_cols=79 Identities=20% Similarity=0.353 Sum_probs=72.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC----ccEEEEEeCCHHHHHHHHHHhCCCccC-------C
Q psy4057 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR----HDIAFVEFENEMQSAAAKLALHGFKIT-------P 235 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g~~i~-------~ 235 (246)
...+.++|||+|||.++++++|+++|++||.|.+++++.++ +|||||+|.+.++|..|+..|||..+. .
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 44568999999999999999999999999999999999974 579999999999999999999999994 2
Q ss_pred CCceEEEeec
Q psy4057 236 THAMKISFAK 245 (246)
Q Consensus 236 g~~l~v~~ak 245 (246)
+++|.|.||+
T Consensus 101 ~~~l~v~~a~ 110 (114)
T 1x5o_A 101 TEPLLCKFSG 110 (114)
T ss_dssp SSCBEEEECC
T ss_pred CCceeEEccC
Confidence 7889999986
No 251
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=9e-18 Score=113.99 Aligned_cols=77 Identities=17% Similarity=0.163 Sum_probs=71.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEE
Q psy4057 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKIS 242 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~ 242 (246)
.....++|||+|||.++++++|+++|+.| .|..++++.+. +|||||+|.+.++|..|+. |||..|+ |+.|+|.
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~-gr~i~v~ 82 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMG-GRYIEVF 82 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEET-TEEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeC-CcEEEEE
Confidence 34568999999999999999999999999 99999999874 5799999999999999999 9999999 9999999
Q ss_pred eecC
Q psy4057 243 FAKK 246 (246)
Q Consensus 243 ~ak~ 246 (246)
+|+.
T Consensus 83 ~a~~ 86 (91)
T 2dgw_A 83 REKS 86 (91)
T ss_dssp EESS
T ss_pred ECCc
Confidence 9863
No 252
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.75 E-value=1.5e-18 Score=126.46 Aligned_cols=83 Identities=20% Similarity=0.371 Sum_probs=76.1
Q ss_pred CCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC---CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEE
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL---KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~ 83 (246)
...++++|||+|||.++++++|+++|++||.|..|.++++. +++|||||+|.+.++|.+|++.|||..+.|++|+|.
T Consensus 43 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 122 (135)
T 2lea_A 43 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 122 (135)
T ss_dssp SGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 44567899999999999999999999999999999998753 788999999999999999999999999999999999
Q ss_pred EccCCc
Q psy4057 84 YSKTDS 89 (246)
Q Consensus 84 ~a~~~~ 89 (246)
+++...
T Consensus 123 ~a~~~~ 128 (135)
T 2lea_A 123 MARYGR 128 (135)
T ss_dssp ECCCCC
T ss_pred ECCCCC
Confidence 987653
No 253
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=4.1e-18 Score=115.69 Aligned_cols=80 Identities=13% Similarity=0.101 Sum_probs=73.8
Q ss_pred CCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccC--CCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEE
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKT--LKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQY 84 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~--~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 84 (246)
.....++|||+|||.++++++|+++|++| .|.+|.++++ ++++|||||+|.+.++|.+|++ |||..+.|++|.|.+
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 44568999999999999999999999999 8999999876 3678999999999999999999 999999999999999
Q ss_pred ccCC
Q psy4057 85 SKTD 88 (246)
Q Consensus 85 a~~~ 88 (246)
+..+
T Consensus 84 a~~~ 87 (91)
T 2dgw_A 84 EKSG 87 (91)
T ss_dssp ESSC
T ss_pred CCcC
Confidence 8755
No 254
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=8.9e-18 Score=119.05 Aligned_cols=79 Identities=29% Similarity=0.481 Sum_probs=71.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHccCCCc----eEEEEeeCC-ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEE
Q psy4057 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGF----KEVRLVPNR-HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKI 241 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i----~~v~~~~~~-~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v 241 (246)
..+++++|||+|||.++|+++|+++|+.||.| ..+++..+. +|||||+|.+.++|..|+..|||..+. |++|+|
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~-g~~l~v 99 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLY-GKILVI 99 (115)
T ss_dssp CCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCS-SCBCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeC-CcEEEE
Confidence 44578999999999999999999999999999 667766544 689999999999999999999999999 999999
Q ss_pred EeecC
Q psy4057 242 SFAKK 246 (246)
Q Consensus 242 ~~ak~ 246 (246)
.||+.
T Consensus 100 ~~a~~ 104 (115)
T 2cpx_A 100 EFGKN 104 (115)
T ss_dssp EECCC
T ss_pred EEccC
Confidence 99873
No 255
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.9e-18 Score=117.78 Aligned_cols=79 Identities=22% Similarity=0.290 Sum_probs=71.3
Q ss_pred CCCCCcEEEecCCChhhhHHHHHHHhhccCC-eeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcC-CccCCeeEEEEE
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLYAIFSQFGQ-IMDIVALKTLKMRGQAFVIFKEIASATNALRSMQG-FPFYDKPMRIQY 84 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~-i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng-~~~~g~~l~v~~ 84 (246)
..++.++|||+|||.++++++|+++|++||. |..+.+ .++|||||+|.+.++|.+|++.||| ..+.|++|+|.+
T Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~----~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 79 (93)
T 2cqh_A 4 GSSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL----LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDY 79 (93)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE----EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE----cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEE
Confidence 3567899999999999999999999999999 666655 3689999999999999999999999 999999999999
Q ss_pred ccCCc
Q psy4057 85 SKTDS 89 (246)
Q Consensus 85 a~~~~ 89 (246)
+..+.
T Consensus 80 a~~~~ 84 (93)
T 2cqh_A 80 SVSKK 84 (93)
T ss_dssp CCCCC
T ss_pred ccCcc
Confidence 97654
No 256
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.75 E-value=1.6e-18 Score=125.88 Aligned_cols=77 Identities=18% Similarity=0.356 Sum_probs=71.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceE--EEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCC----ccCC
Q psy4057 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKE--VRLVPNR-----HDIAFVEFENEMQSAAAKLALHGF----KITP 235 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~--v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~----~i~~ 235 (246)
...++++|||+|||.++|+++|+++|++||.|.. |+++.++ +|||||+|.+. +|..|+..|||. .++
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~- 96 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTID- 96 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGG-
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCC-
Confidence 4467899999999999999999999999999966 9999876 58999999999 999999999999 999
Q ss_pred CCceEEEeec
Q psy4057 236 THAMKISFAK 245 (246)
Q Consensus 236 g~~l~v~~ak 245 (246)
|++|+|.||+
T Consensus 97 gr~l~V~~a~ 106 (131)
T 2m2b_A 97 GKTINVEFAK 106 (131)
T ss_dssp GCCCCCEECC
T ss_pred CEEEEEEECC
Confidence 9999999986
No 257
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.75 E-value=2.4e-18 Score=112.52 Aligned_cols=70 Identities=21% Similarity=0.285 Sum_probs=66.2
Q ss_pred EEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEee
Q psy4057 173 ILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFA 244 (246)
Q Consensus 173 ~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~a 244 (246)
+|||+|||.++++++|+++|++||.|.+++++.++ +|||||+|.+.++|.+|++ |||..++ |++|+|.||
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~-g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEIN-NKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSS-SCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEEC-CEEEEEEeC
Confidence 48999999999999999999999999999999875 5899999999999999998 9999999 999999986
No 258
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.75 E-value=4.1e-18 Score=128.56 Aligned_cols=83 Identities=16% Similarity=0.252 Sum_probs=75.4
Q ss_pred CCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC---CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEE
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL---KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~ 83 (246)
...++++|||+|||..+++++|+++|++||.|..|.++.+. .++|||||+|.+.++|..|++.|||..|.|++|.|.
T Consensus 68 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 147 (165)
T 1rk8_A 68 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 147 (165)
T ss_dssp CCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 45667889999999999999999999999999999998753 678999999999999999999999999999999999
Q ss_pred EccCCc
Q psy4057 84 YSKTDS 89 (246)
Q Consensus 84 ~a~~~~ 89 (246)
++....
T Consensus 148 ~a~~~~ 153 (165)
T 1rk8_A 148 WCFVKG 153 (165)
T ss_dssp ESEECC
T ss_pred EecCCC
Confidence 986553
No 259
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.75 E-value=5.6e-18 Score=118.16 Aligned_cols=77 Identities=12% Similarity=0.317 Sum_probs=70.1
Q ss_pred CCCCcEEEEcCCCCCC------CHHHHHHHHccCCCceEEEEeeCC---ccEEEEEeCCHHHHHHHHHHhCCCccCCCC-
Q psy4057 168 QPPNQILFLTNLPEET------SEMMLSMLFNQFPGFKEVRLVPNR---HDIAFVEFENEMQSAAAKLALHGFKITPTH- 237 (246)
Q Consensus 168 ~~~~~~l~v~nL~~~~------t~e~l~~~f~~~G~i~~v~~~~~~---~g~afV~f~~~~~A~~Al~~l~g~~i~~g~- 237 (246)
...+++|||+|||..+ |+++|+++|++||.|.++++++.. +|||||+|.+.++|..|+..|||..++ |+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~-g~~ 90 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD-KQH 90 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECS-TTC
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccC-CCc
Confidence 3457899999999999 789999999999999999998522 589999999999999999999999999 87
Q ss_pred ceEEEeec
Q psy4057 238 AMKISFAK 245 (246)
Q Consensus 238 ~l~v~~ak 245 (246)
+|+|.||+
T Consensus 91 ~l~V~~a~ 98 (105)
T 2nlw_A 91 TFRVNLFT 98 (105)
T ss_dssp EEEEECSC
T ss_pred eEEEEEcc
Confidence 99999985
No 260
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.75 E-value=8.2e-18 Score=125.75 Aligned_cols=78 Identities=17% Similarity=0.266 Sum_probs=73.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEE
Q psy4057 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKI 241 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v 241 (246)
...+.++|||+|||.++|+++|+++|+.||.|..|+++.++ +|||||+|.+.++|.+|+..|||..|+ |++|+|
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~-g~~l~V 113 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLD-DRIIRT 113 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEET-TEECEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC-CeEEEE
Confidence 34578999999999999999999999999999999999875 479999999999999999999999999 999999
Q ss_pred Eeec
Q psy4057 242 SFAK 245 (246)
Q Consensus 242 ~~ak 245 (246)
.||+
T Consensus 114 ~~a~ 117 (156)
T 1h2v_Z 114 DWDA 117 (156)
T ss_dssp EEES
T ss_pred EECC
Confidence 9996
No 261
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.3e-17 Score=114.55 Aligned_cols=76 Identities=20% Similarity=0.378 Sum_probs=69.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCCccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEeecC
Q psy4057 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~ak~ 246 (246)
...++++|||+|| ++|+++|+++|++||.|.+|.+... +|||||+|.+.++|.+|+..|||..|. |++|+|.||+.
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~~-~g~afV~f~~~~~a~~Ai~~l~g~~~~-g~~l~v~~a~~ 86 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPP-RNCAFVTYEKMESADQAVAELNGTQVE-SVQLKVNIARK 86 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEETT-TTEEEEEESSHHHHHHHHHHTTTEEET-TEEEEEECCSS
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecCC-CCEEEEEECCHHHHHHHHHHhCCCeEC-CeEEEEEECCC
Confidence 3456899999996 8999999999999999999999644 489999999999999999999999999 99999999863
No 262
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.75 E-value=6e-18 Score=125.71 Aligned_cols=81 Identities=26% Similarity=0.369 Sum_probs=71.7
Q ss_pred CCCCc--EEEecCCChhhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccCC--eeEEEE
Q psy4057 8 ICVTN--FVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYD--KPMRIQ 83 (246)
Q Consensus 8 ~~~~~--~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g--~~l~v~ 83 (246)
.+|++ +|||+||++.+++++|+++|++||.|.+|.+... +++|||||+|.+.++|..|++.|||..|.| ++|+|.
T Consensus 41 ~~ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k-~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~ 119 (164)
T 1sjr_A 41 AGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 119 (164)
T ss_dssp CCCCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES-SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEE
T ss_pred CCCCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEE
Confidence 34554 4789999999999999999999999999998643 468999999999999999999999999966 999999
Q ss_pred EccCCc
Q psy4057 84 YSKTDS 89 (246)
Q Consensus 84 ~a~~~~ 89 (246)
|++.+.
T Consensus 120 ~Ak~~~ 125 (164)
T 1sjr_A 120 FSKLTS 125 (164)
T ss_dssp ECSSSS
T ss_pred EecCCc
Confidence 998664
No 263
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.3e-18 Score=114.42 Aligned_cols=73 Identities=19% Similarity=0.361 Sum_probs=68.7
Q ss_pred cEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC---CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEc
Q psy4057 12 NFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL---KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYS 85 (246)
Q Consensus 12 ~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a 85 (246)
++|||+|||.++++++|+++|++||.|.+|.+.++. +++|||||+|.+.++|.+|++.++ ..+.|++|+|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999998763 678999999999999999999999 9999999999986
No 264
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.74 E-value=2.3e-18 Score=123.78 Aligned_cols=78 Identities=26% Similarity=0.332 Sum_probs=72.7
Q ss_pred CCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccC---CCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEcc
Q psy4057 10 VTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKT---LKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSK 86 (246)
Q Consensus 10 ~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~---~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~ 86 (246)
++++|||+|||.++++++|+++|++||.|.+|.++++ ++++|||||+|.+.++|.+|+ .|||..+.|++|+|.+++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 3689999999999999999999999999999999875 478999999999999999999 799999999999999987
Q ss_pred CC
Q psy4057 87 TD 88 (246)
Q Consensus 87 ~~ 88 (246)
..
T Consensus 114 ~~ 115 (124)
T 2jwn_A 114 TN 115 (124)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 265
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=6e-18 Score=117.80 Aligned_cols=80 Identities=19% Similarity=0.182 Sum_probs=72.5
Q ss_pred CCCCcEEEecCCChhhhHHHHHHHhhccCCeeE-EEEccC--CCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEE
Q psy4057 8 ICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMD-IVALKT--LKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQY 84 (246)
Q Consensus 8 ~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~-v~~~~~--~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 84 (246)
..+.++|||+|||+++++++|+++|++||.|.+ |.++.+ ++++|||||+|.+.++|.+|++. |+..+.|++|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 456799999999999999999999999999987 777765 47899999999999999999997 99999999999999
Q ss_pred ccCC
Q psy4057 85 SKTD 88 (246)
Q Consensus 85 a~~~ 88 (246)
+...
T Consensus 91 ~~~~ 94 (104)
T 1wg5_A 91 SSRA 94 (104)
T ss_dssp ECTT
T ss_pred CCHH
Confidence 8544
No 266
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=4e-18 Score=118.87 Aligned_cols=78 Identities=13% Similarity=0.197 Sum_probs=72.7
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceE
Q psy4057 166 PEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMK 240 (246)
Q Consensus 166 ~~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~ 240 (246)
...++.++|||+|||.++++++|+++|++||.|..|+++.++ +|||||+|.+.++|.+|+.. ||..|. |+.|+
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~-g~~l~ 88 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLD-GRNID 88 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEET-TEEEB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeEC-CEEEE
Confidence 355679999999999999999999999999999999999975 48999999999999999999 999999 99999
Q ss_pred EEeec
Q psy4057 241 ISFAK 245 (246)
Q Consensus 241 v~~ak 245 (246)
|.||+
T Consensus 89 V~~a~ 93 (105)
T 2dh8_A 89 PKPCT 93 (105)
T ss_dssp CCCSC
T ss_pred EEEcc
Confidence 99986
No 267
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3e-18 Score=121.71 Aligned_cols=80 Identities=18% Similarity=0.330 Sum_probs=73.9
Q ss_pred CCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC---CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEcc
Q psy4057 10 VTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL---KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSK 86 (246)
Q Consensus 10 ~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~ 86 (246)
+.++|||+|||.++++++|+++|++||.|..|.++++. +++|||||+|.+.++|.+|++. ++..+.|++|+|.++.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 46899999999999999999999999999999998863 7889999999999999999997 9999999999999987
Q ss_pred CCcc
Q psy4057 87 TDSD 90 (246)
Q Consensus 87 ~~~~ 90 (246)
.+..
T Consensus 105 ~~~~ 108 (116)
T 1x4b_A 105 AREE 108 (116)
T ss_dssp SCCC
T ss_pred CCcc
Confidence 6643
No 268
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=8.4e-18 Score=116.81 Aligned_cols=82 Identities=17% Similarity=0.226 Sum_probs=74.0
Q ss_pred CCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccC---CCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEE
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKT---LKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~---~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~ 83 (246)
...+.++|||+|||.++++++|+++|++||.|..|.++++ ++++|||||+|.+.++|.+|+. ++..+.|++|.|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~ 88 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCK 88 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEE
Confidence 4467899999999999999999999999999999999876 4778999999999999999999 4778999999999
Q ss_pred EccCCcc
Q psy4057 84 YSKTDSD 90 (246)
Q Consensus 84 ~a~~~~~ 90 (246)
++..+..
T Consensus 89 ~a~~~~~ 95 (103)
T 2cqg_A 89 LPNSKQS 95 (103)
T ss_dssp CCCTTCC
T ss_pred ecCCCCc
Confidence 9876643
No 269
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.9e-18 Score=116.91 Aligned_cols=75 Identities=19% Similarity=0.274 Sum_probs=67.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHccCCC-ceEEEEeeCCccEEEEEeCCHHHHHHHHHHhCC-CccCCCCceEEEeec
Q psy4057 168 QPPNQILFLTNLPEETSEMMLSMLFNQFPG-FKEVRLVPNRHDIAFVEFENEMQSAAAKLALHG-FKITPTHAMKISFAK 245 (246)
Q Consensus 168 ~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~-i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g-~~i~~g~~l~v~~ak 245 (246)
.++.++|||+|||.++|+++|+++|++||. |..+.+.. +|||||+|.+.++|..|++.||| ..++ |+.|+|.||+
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~-g~~l~v~~a~ 81 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLK--SGYAFVDYPDQNWAIRAIETLSGKVELH-GKIMEVDYSV 81 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEEE--TTEEEECCSCHHHHHHHHHHHTTTCEET-TEECEEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEcC--CCEEEEEECCHHHHHHHHHHccCCeeEC-CEEEEEEEcc
Confidence 456899999999999999999999999999 66555543 48999999999999999999999 9999 9999999986
No 270
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.74 E-value=9.6e-18 Score=120.17 Aligned_cols=81 Identities=25% Similarity=0.355 Sum_probs=70.5
Q ss_pred CCCCCcEEE--ecCCChhhhHHHHHHHhhccCCeeEEEEccCCCCccE-EEEEEcCHHHHHHHHHHhcCCccCC--eeEE
Q psy4057 7 HICVTNFVY--VTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQ-AFVIFKEIASATNALRSMQGFPFYD--KPMR 81 (246)
Q Consensus 7 ~~~~~~~l~--V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~-aFV~f~~~~~A~~Ai~~lng~~~~g--~~l~ 81 (246)
..+|++.|+ |+||++.+++++|+++|++||.|.+|.+.+. .+|+ |||+|.+.++|..|++.|||..+.| ++|+
T Consensus 22 ~~~ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~--~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~Lr 99 (130)
T 3zzy_A 22 MAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK--NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLR 99 (130)
T ss_dssp ---CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE--TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEE
T ss_pred cCCCCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC--CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEE
Confidence 345566555 7999999999999999999999999988764 4677 9999999999999999999999988 9999
Q ss_pred EEEccCCc
Q psy4057 82 IQYSKTDS 89 (246)
Q Consensus 82 v~~a~~~~ 89 (246)
|+||+...
T Consensus 100 I~~ak~~~ 107 (130)
T 3zzy_A 100 IDFSKLTS 107 (130)
T ss_dssp EEECSCSS
T ss_pred EEecCCCc
Confidence 99997664
No 271
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=8.6e-18 Score=116.33 Aligned_cols=75 Identities=20% Similarity=0.253 Sum_probs=67.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeC----CccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEE
Q psy4057 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPN----RHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKIS 242 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~----~~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~ 242 (246)
...+.++|||+|||.++|+++|+++|++||.| +++.+ .+|||||+|.+.++|.+|+..|||..|. |++|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIE-GRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEET-TEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeC-CeEEEEE
Confidence 45579999999999999999999999999987 44444 2589999999999999999999999999 9999999
Q ss_pred eec
Q psy4057 243 FAK 245 (246)
Q Consensus 243 ~ak 245 (246)
||+
T Consensus 87 ~a~ 89 (101)
T 2fc9_A 87 LQG 89 (101)
T ss_dssp ECS
T ss_pred EcC
Confidence 986
No 272
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.2e-18 Score=121.20 Aligned_cols=80 Identities=15% Similarity=0.077 Sum_probs=73.0
Q ss_pred CCCCcEEEecCCChhhhHHHHHHHhhccCCe-eEEEEccCC--CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEE
Q psy4057 8 ICVTNFVYVTHISSTDLKKSLYAIFSQFGQI-MDIVALKTL--KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQY 84 (246)
Q Consensus 8 ~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i-~~v~~~~~~--~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 84 (246)
..+.++|||+|||.++++++|+++|++||.| .+|.++.+. +++|||||+|.+.++|.+|++. |+..+.|++|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHV 90 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEE
Confidence 4567999999999999999999999999999 788888754 7899999999999999999996 99999999999999
Q ss_pred ccCC
Q psy4057 85 SKTD 88 (246)
Q Consensus 85 a~~~ 88 (246)
+...
T Consensus 91 a~~~ 94 (114)
T 2cpy_A 91 VTLE 94 (114)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8544
No 273
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.74 E-value=1.4e-17 Score=115.86 Aligned_cols=81 Identities=17% Similarity=0.275 Sum_probs=72.2
Q ss_pred CCCCCcEEEecCCCh-----hhhHHHHHHHhhccCCeeEEEEccC----CCCccEEEEEEcCHHHHHHHHHHhcCCccCC
Q psy4057 7 HICVTNFVYVTHISS-----TDLKKSLYAIFSQFGQIMDIVALKT----LKMRGQAFVIFKEIASATNALRSMQGFPFYD 77 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~-----~~~e~~l~~~F~~fG~i~~v~~~~~----~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g 77 (246)
...|+++|+|.||.. +.++++|++.|++||.|.+|.++++ ++++|+|||+|.+.++|.+|++.|||..+.|
T Consensus 4 ~~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~G 83 (105)
T 2pe8_A 4 GKCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGG 83 (105)
T ss_dssp GGSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 457899999999962 4589999999999999999999876 3679999999999999999999999999999
Q ss_pred eeEEEEEccC
Q psy4057 78 KPMRIQYSKT 87 (246)
Q Consensus 78 ~~l~v~~a~~ 87 (246)
|+|.|.++..
T Consensus 84 r~i~v~~a~~ 93 (105)
T 2pe8_A 84 RVVKACFYNL 93 (105)
T ss_dssp EECEEEECCH
T ss_pred cEEEEEEcCH
Confidence 9999999854
No 274
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.74 E-value=4.5e-18 Score=114.77 Aligned_cols=77 Identities=16% Similarity=0.248 Sum_probs=72.0
Q ss_pred CCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEccCC
Q psy4057 9 CVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTD 88 (246)
Q Consensus 9 ~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~~~ 88 (246)
.++++|||+|||.++++++|+++|++| .|.++.+. +++|||||+|.+.++|.+|++.|||..+.|++|+|.++..+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~---~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD---RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE---GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe---CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 467899999999999999999999999 89999884 68999999999999999999999999999999999998665
Q ss_pred c
Q psy4057 89 S 89 (246)
Q Consensus 89 ~ 89 (246)
.
T Consensus 79 ~ 79 (88)
T 1wg1_A 79 A 79 (88)
T ss_dssp C
T ss_pred c
Confidence 4
No 275
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.6e-18 Score=118.39 Aligned_cols=81 Identities=15% Similarity=0.170 Sum_probs=72.2
Q ss_pred CCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC--CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEE
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL--KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQY 84 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~--~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 84 (246)
...+.++|||+|||+++++++|+++|++|| +.+|.++.+. +++|||||+|.+.++|++|++ +|+..+.|+.|.|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFL 88 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 456778999999999999999999999999 5599888654 788999999999999999995 899999999999999
Q ss_pred ccCCc
Q psy4057 85 SKTDS 89 (246)
Q Consensus 85 a~~~~ 89 (246)
+....
T Consensus 89 ~~~~~ 93 (102)
T 1wez_A 89 NSTAG 93 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 86543
No 276
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.2e-17 Score=114.81 Aligned_cols=78 Identities=23% Similarity=0.323 Sum_probs=71.6
Q ss_pred CCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEcc
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSK 86 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~ 86 (246)
...++++|||+|+ ++++++|+++|++||.|.+|.+. +++|||||+|.+.++|.+|++.|||..+.|++|+|.++.
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~---~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 85 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD---PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 85 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE---TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCS
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec---CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence 3457899999996 89999999999999999999884 588999999999999999999999999999999999987
Q ss_pred CCc
Q psy4057 87 TDS 89 (246)
Q Consensus 87 ~~~ 89 (246)
.+.
T Consensus 86 ~~~ 88 (97)
T 1x5p_A 86 KQP 88 (97)
T ss_dssp SCC
T ss_pred CCC
Confidence 654
No 277
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.74 E-value=1.8e-17 Score=118.19 Aligned_cols=80 Identities=20% Similarity=0.324 Sum_probs=70.8
Q ss_pred CCCCcEE--EecCCChhhhHHHHHHHhhccCCeeEEEEccCCCCccE-EEEEEcCHHHHHHHHHHhcCCccCC--eeEEE
Q psy4057 8 ICVTNFV--YVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQ-AFVIFKEIASATNALRSMQGFPFYD--KPMRI 82 (246)
Q Consensus 8 ~~~~~~l--~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~-aFV~f~~~~~A~~Ai~~lng~~~~g--~~l~v 82 (246)
.+|+++| ||+||++.+++++|+++|++||.|.+|.+... .|+ |||+|.+.++|..|++.|||..|.| ++|+|
T Consensus 20 ~~ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~---~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V 96 (124)
T 2e5i_A 20 SGGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR---NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKI 96 (124)
T ss_dssp CCCCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES---SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEE
T ss_pred CCCCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEE
Confidence 4567775 57999999999999999999999999998652 386 9999999999999999999999988 68999
Q ss_pred EEccCCcc
Q psy4057 83 QYSKTDSD 90 (246)
Q Consensus 83 ~~a~~~~~ 90 (246)
.+|+....
T Consensus 97 ~~Ak~~~l 104 (124)
T 2e5i_A 97 EYARPTRL 104 (124)
T ss_dssp ECCSCSCC
T ss_pred EEecCCcc
Confidence 99987653
No 278
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.74 E-value=3.7e-18 Score=121.60 Aligned_cols=79 Identities=13% Similarity=0.063 Sum_probs=72.4
Q ss_pred CCCCcEEEecCCChhhhHHHHHHHhhccCC---eeEEEEccCC--CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEE
Q psy4057 8 ICVTNFVYVTHISSTDLKKSLYAIFSQFGQ---IMDIVALKTL--KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRI 82 (246)
Q Consensus 8 ~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~---i~~v~~~~~~--~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v 82 (246)
....++|||+|||+++++++|+++|+.||. |..|.++.+. +++|||||+|.+.++|.+|++ +|+..+.|++|+|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 445789999999999999999999999999 8999888654 788999999999999999999 9999999999999
Q ss_pred EEccC
Q psy4057 83 QYSKT 87 (246)
Q Consensus 83 ~~a~~ 87 (246)
.++..
T Consensus 93 ~~a~~ 97 (118)
T 2db1_A 93 FKSHR 97 (118)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 99843
No 279
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.74 E-value=1.4e-18 Score=120.43 Aligned_cols=80 Identities=14% Similarity=0.214 Sum_probs=71.4
Q ss_pred CCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccC---CCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEE
Q psy4057 8 ICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKT---LKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQY 84 (246)
Q Consensus 8 ~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~---~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 84 (246)
..+.++|||+|||.++++++|+++|++||.|.. .++.+ ++++|||||+|.+.++|.+|++ |||..+.|++|+|.+
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 346889999999999999999999999999887 34433 4789999999999999999999 999999999999999
Q ss_pred ccCCc
Q psy4057 85 SKTDS 89 (246)
Q Consensus 85 a~~~~ 89 (246)
+..+.
T Consensus 92 a~~~~ 96 (101)
T 1fj7_A 92 PKGRD 96 (101)
T ss_dssp CSCCC
T ss_pred cCCCC
Confidence 87653
No 280
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.73 E-value=7.5e-18 Score=119.99 Aligned_cols=77 Identities=18% Similarity=0.130 Sum_probs=71.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHccCCC---ceEEEEeeCC----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCce
Q psy4057 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPG---FKEVRLVPNR----HDIAFVEFENEMQSAAAKLALHGFKITPTHAM 239 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~---i~~v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l 239 (246)
.....++|||+|||.++|+++|+++|+.||. |..|+++.++ +|||||+|.+.++|.+|++ |||..|+ |+.|
T Consensus 13 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~-gr~i 90 (118)
T 2db1_A 13 EGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMG-HRYI 90 (118)
T ss_dssp CBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEET-TEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeEC-CeEE
Confidence 3446899999999999999999999999999 8999999865 5799999999999999999 9999999 9999
Q ss_pred EEEeec
Q psy4057 240 KISFAK 245 (246)
Q Consensus 240 ~v~~ak 245 (246)
+|.+|+
T Consensus 91 ~V~~a~ 96 (118)
T 2db1_A 91 EVFKSH 96 (118)
T ss_dssp EEEEEC
T ss_pred EEEECC
Confidence 999985
No 281
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=9.5e-18 Score=117.75 Aligned_cols=77 Identities=19% Similarity=0.305 Sum_probs=70.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHccCCC-ceEEEEe-eC-----CccEEEEEeCCHHHHHHHHHHhC--CCccCCCCc
Q psy4057 168 QPPNQILFLTNLPEETSEMMLSMLFNQFPG-FKEVRLV-PN-----RHDIAFVEFENEMQSAAAKLALH--GFKITPTHA 238 (246)
Q Consensus 168 ~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~-i~~v~~~-~~-----~~g~afV~f~~~~~A~~Al~~l~--g~~i~~g~~ 238 (246)
..+.++|||+|||.++++++|+++|+.||. |.++.++ .+ .+|||||+|.+.++|..|+..|| +..++ |+.
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~-g~~ 83 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLW-GHQ 83 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBT-TBC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceec-CCe
Confidence 446899999999999999999999999998 9999998 33 25899999999999999999996 58999 999
Q ss_pred eEEEeec
Q psy4057 239 MKISFAK 245 (246)
Q Consensus 239 l~v~~ak 245 (246)
|+|.||+
T Consensus 84 l~V~~a~ 90 (109)
T 2dis_A 84 IAVDWAE 90 (109)
T ss_dssp CEEEESC
T ss_pred EEEEEcC
Confidence 9999986
No 282
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.73 E-value=2.8e-18 Score=113.90 Aligned_cols=71 Identities=13% Similarity=0.360 Sum_probs=64.4
Q ss_pred CcEEEEcCCCCCC------CHHHHHHHHccCCCceEEEEeeCC---ccEEEEEeCCHHHHHHHHHHhCCCccCCCC-ceE
Q psy4057 171 NQILFLTNLPEET------SEMMLSMLFNQFPGFKEVRLVPNR---HDIAFVEFENEMQSAAAKLALHGFKITPTH-AMK 240 (246)
Q Consensus 171 ~~~l~v~nL~~~~------t~e~l~~~f~~~G~i~~v~~~~~~---~g~afV~f~~~~~A~~Al~~l~g~~i~~g~-~l~ 240 (246)
+++|||+|||..+ ++++|+++|++||.|.++++++.. +|||||+|.+.++|..|+..|||..++ |+ +|+
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~-g~~~l~ 79 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD-KQHTFR 79 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCS-SSSCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccC-CceeEE
Confidence 4789999999999 779999999999999999988532 589999999999999999999999999 88 887
Q ss_pred EE
Q psy4057 241 IS 242 (246)
Q Consensus 241 v~ 242 (246)
|+
T Consensus 80 V~ 81 (81)
T 2krb_A 80 VN 81 (81)
T ss_dssp CC
T ss_pred eC
Confidence 63
No 283
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.73 E-value=7.7e-18 Score=113.62 Aligned_cols=74 Identities=16% Similarity=0.276 Sum_probs=69.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCCccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEeecC
Q psy4057 170 PNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246 (246)
Q Consensus 170 ~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~ak~ 246 (246)
.+++|||+|||.++++++|+++|++| .|.++++. ..+|||||+|.+.++|..|++.|||..++ |++|+|.||+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-~~~g~afV~f~~~~~a~~Ai~~l~g~~~~-g~~l~V~~a~~ 77 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-RNKRTAFVTLLNGEQAQNAIQMFHQYSFR-GKDLIVQLQPT 77 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-GGGTEEEECCSCHHHHHHHHHHHTTEEET-TEEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-CCCcEEEEEECCHHHHHHHHHHhCCCeEC-CcEEEEEEcCC
Confidence 57899999999999999999999999 99999986 44699999999999999999999999999 99999999863
No 284
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=5.1e-18 Score=111.47 Aligned_cols=71 Identities=18% Similarity=0.270 Sum_probs=67.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEee
Q psy4057 172 QILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFA 244 (246)
Q Consensus 172 ~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~a 244 (246)
++|||+|||.++++++|+++|++||.|.+++++.++ +|||||+|.+.++|..|++.|+ ..++ |++|+|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~-g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELD-SKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCS-SCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccC-CEEEEEEec
Confidence 479999999999999999999999999999999875 5899999999999999999999 8899 999999987
No 285
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.73 E-value=3.7e-18 Score=124.15 Aligned_cols=78 Identities=13% Similarity=0.036 Sum_probs=72.0
Q ss_pred CCCCcEEEecCCChhhhHHHHHHHhhccCC---eeEEEEccCC--CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEE
Q psy4057 8 ICVTNFVYVTHISSTDLKKSLYAIFSQFGQ---IMDIVALKTL--KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRI 82 (246)
Q Consensus 8 ~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~---i~~v~~~~~~--~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v 82 (246)
....++|||+|||+++++++|+++|++||. |.+|.++++. +++|||||+|.+.++|++|++ +|+..+.|++|.|
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V 119 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEV 119 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEE
Confidence 345789999999999999999999999999 8889888764 788999999999999999999 9999999999999
Q ss_pred EEcc
Q psy4057 83 QYSK 86 (246)
Q Consensus 83 ~~a~ 86 (246)
.++.
T Consensus 120 ~~a~ 123 (136)
T 2hgl_A 120 FKSH 123 (136)
T ss_dssp EECC
T ss_pred EECC
Confidence 9974
No 286
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.5e-17 Score=114.65 Aligned_cols=78 Identities=18% Similarity=0.202 Sum_probs=70.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceE-EEEeeCC----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEE
Q psy4057 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKE-VRLVPNR----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKI 241 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~-v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v 241 (246)
.....++|||+|||.++|+++|+++|+.||.|.+ |+++.+. +|||||+|.+.++|.+|+.. ||..++ |+.|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~-gr~i~v 88 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIG-HRYIEI 88 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSS-SSCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhC-CcEEEE
Confidence 3456899999999999999999999999999987 8887753 58999999999999999997 999999 999999
Q ss_pred EeecC
Q psy4057 242 SFAKK 246 (246)
Q Consensus 242 ~~ak~ 246 (246)
.++.+
T Consensus 89 ~~~~~ 93 (104)
T 1wg5_A 89 FKSSR 93 (104)
T ss_dssp EEECT
T ss_pred EECCH
Confidence 98763
No 287
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.73 E-value=8.7e-18 Score=117.96 Aligned_cols=78 Identities=17% Similarity=0.213 Sum_probs=67.7
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceE
Q psy4057 166 PEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMK 240 (246)
Q Consensus 166 ~~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~ 240 (246)
....+.++|||+|||.++|+++|+++|+.||.|.+|+++.++ +|||||+|.+.++|..|+..+ |..++ |+.|+
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~-g~~l~ 97 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELD-SKTID 97 (109)
T ss_dssp ------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEET-TEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCC-CEEEE
Confidence 345578999999999999999999999999999999999875 589999999999999999986 58899 99999
Q ss_pred EEeec
Q psy4057 241 ISFAK 245 (246)
Q Consensus 241 v~~ak 245 (246)
|.+|+
T Consensus 98 V~~a~ 102 (109)
T 2rs2_A 98 PKVAF 102 (109)
T ss_dssp EEECC
T ss_pred EEEcc
Confidence 99985
No 288
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.73 E-value=1.7e-17 Score=112.07 Aligned_cols=77 Identities=22% Similarity=0.335 Sum_probs=63.9
Q ss_pred CCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCcc--CCeeEEEEE
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPF--YDKPMRIQY 84 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~--~g~~l~v~~ 84 (246)
..++..+|||+|||.++++++|+++|++||.|.+|.++++ ++|||||+|.+.++|.+ +++..+ .|++|.|.+
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~--srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~ 80 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP--FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISN 80 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS--CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC--CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEE
Confidence 4567899999999999999999999999999999999885 89999999999999983 566554 599999999
Q ss_pred ccCCc
Q psy4057 85 SKTDS 89 (246)
Q Consensus 85 a~~~~ 89 (246)
+.++.
T Consensus 81 a~~k~ 85 (89)
T 3d2w_A 81 AEPKH 85 (89)
T ss_dssp CC---
T ss_pred cCCCC
Confidence 87553
No 289
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1e-17 Score=120.36 Aligned_cols=77 Identities=18% Similarity=0.234 Sum_probs=67.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEee-CC----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEE
Q psy4057 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVP-NR----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKI 241 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~-~~----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v 241 (246)
.....++|||+|||.++|+++|+++|+.||.|..+.++. +. +|||||+|.+.++|.+||. |||..|+ |+.|+|
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~-gr~i~V 98 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMG-NRFIQV 98 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCST-TSCBEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeEC-CcEEEE
Confidence 344679999999999999999999999999997744443 22 5899999999999999999 9999999 999999
Q ss_pred Eeec
Q psy4057 242 SFAK 245 (246)
Q Consensus 242 ~~ak 245 (246)
.+|+
T Consensus 99 ~~a~ 102 (124)
T 1wel_A 99 HPIT 102 (124)
T ss_dssp EEEC
T ss_pred EECC
Confidence 9986
No 290
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.73 E-value=7e-18 Score=121.22 Aligned_cols=74 Identities=14% Similarity=0.255 Sum_probs=70.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEee
Q psy4057 170 PNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFA 244 (246)
Q Consensus 170 ~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~a 244 (246)
..++|||+|||.++|+++|+++|++||.|.+++++.++ +|||||+|.+.++|..|+ .|||..|+ |+.|+|+|+
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~-g~~l~V~~a 112 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFR-GRTIKVLPK 112 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEET-TEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeEC-CeEEEEEEC
Confidence 47899999999999999999999999999999999864 689999999999999999 89999999 999999998
Q ss_pred c
Q psy4057 245 K 245 (246)
Q Consensus 245 k 245 (246)
+
T Consensus 113 ~ 113 (124)
T 2jwn_A 113 R 113 (124)
T ss_dssp S
T ss_pred C
Confidence 6
No 291
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.72 E-value=3.5e-18 Score=111.67 Aligned_cols=72 Identities=19% Similarity=0.261 Sum_probs=67.1
Q ss_pred EEEecCCChhhhHHHHHHHhhccCCeeEEEEccC---CCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEc
Q psy4057 13 FVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKT---LKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYS 85 (246)
Q Consensus 13 ~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~---~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a 85 (246)
+|||+|||.++++++|+++|++||.|.+|.+.++ ++++|||||+|.+.++|.+|++ +++..+.|++|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 5899999999999999999999999999999876 3788999999999999999999 5899999999999875
No 292
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.72 E-value=2.2e-18 Score=116.75 Aligned_cols=72 Identities=22% Similarity=0.361 Sum_probs=67.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEeec
Q psy4057 172 QILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAK 245 (246)
Q Consensus 172 ~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~ak 245 (246)
++|||+|||.++++++|+++|++||.|.+++++.++ +|||||+|.+.+ |..|+..|||..++ |+.|+|+||.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~-g~~l~V~~a~ 78 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFM-GRTIRVTEAN 78 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCS-SSSCSEEEC-
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEEC-CeEEEEEEcC
Confidence 579999999999999999999999999999999864 589999999999 99999999999999 9999999986
No 293
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=4.7e-17 Score=113.00 Aligned_cols=76 Identities=17% Similarity=0.180 Sum_probs=69.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEE
Q psy4057 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKI 241 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v 241 (246)
...+.++|||+|||.++++++|+++|++||.|..++++.++ +|||||+|.+.++|..|+. ++..++ |+.|+|
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~-g~~l~v 87 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMID-GRWCDC 87 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEET-TEEEEE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeC-CeEEEE
Confidence 45568999999999999999999999999999999999875 5799999999999999999 577899 999999
Q ss_pred Eeec
Q psy4057 242 SFAK 245 (246)
Q Consensus 242 ~~ak 245 (246)
.||+
T Consensus 88 ~~a~ 91 (103)
T 2cqg_A 88 KLPN 91 (103)
T ss_dssp ECCC
T ss_pred EecC
Confidence 9986
No 294
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=1.7e-17 Score=113.74 Aligned_cols=81 Identities=14% Similarity=0.182 Sum_probs=72.1
Q ss_pred CCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEE-EEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEc
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDI-VALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYS 85 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v-~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a 85 (246)
...++++|||+|||.++++++|+++|++||.|.+| .++.+. ..+.|||+|.+.++|.+|++.|||..+.|++|+|.++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~-~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 11 KRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDS-ETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp CCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSS-SSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCC-CCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 34457999999999999999999999999999999 476664 3344999999999999999999999999999999998
Q ss_pred cCC
Q psy4057 86 KTD 88 (246)
Q Consensus 86 ~~~ 88 (246)
.++
T Consensus 90 ~~~ 92 (96)
T 2e44_A 90 PDE 92 (96)
T ss_dssp CCC
T ss_pred Ccc
Confidence 765
No 295
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.72 E-value=6.9e-18 Score=115.70 Aligned_cols=76 Identities=18% Similarity=0.288 Sum_probs=68.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeC--CccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEee
Q psy4057 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPN--RHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFA 244 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~--~~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~a 244 (246)
...+.++|||+|||.++++++|+++|++||.|..+ ... .+|||||+|.+.++|..|+..|||..++ |++|+|.||
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~--~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~-g~~l~v~~a 88 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEID-GRSVSLYYT 88 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE--EETTEEEEEEEEEESSHHHHHHHHHHTTEEEET-TEEEEEEEC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe--CCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC-CeEEEEEEc
Confidence 45578999999999999999999999999999877 222 2689999999999999999999999999 999999998
Q ss_pred c
Q psy4057 245 K 245 (246)
Q Consensus 245 k 245 (246)
+
T Consensus 89 ~ 89 (96)
T 1fjc_A 89 G 89 (96)
T ss_dssp S
T ss_pred C
Confidence 5
No 296
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.2e-17 Score=118.61 Aligned_cols=74 Identities=22% Similarity=0.266 Sum_probs=70.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEee
Q psy4057 170 PNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFA 244 (246)
Q Consensus 170 ~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~a 244 (246)
+.++|||+|||.++++++|+++|+.||.|..|+++.++ +|||||+|.+.++|..|+.. ||..|+ |+.|+|.||
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~-g~~l~V~~a 103 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSID-GRVVEPKRA 103 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEET-TEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEEC-CEEEEEEEC
Confidence 47999999999999999999999999999999999874 58999999999999999998 999999 999999998
Q ss_pred c
Q psy4057 245 K 245 (246)
Q Consensus 245 k 245 (246)
+
T Consensus 104 ~ 104 (116)
T 1x4b_A 104 V 104 (116)
T ss_dssp S
T ss_pred C
Confidence 6
No 297
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=1e-17 Score=117.31 Aligned_cols=75 Identities=13% Similarity=0.221 Sum_probs=69.2
Q ss_pred CcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC--CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEccC
Q psy4057 11 TNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL--KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKT 87 (246)
Q Consensus 11 ~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~--~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~~ 87 (246)
..+|||+|||+++++++|+++|++| .|.+|.|+.+. +++|||||+|.+.++|.+|+ .+|+..+.||.|.|..+..
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 5799999999999999999999999 79999998654 78999999999999999999 5999999999999988743
No 298
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.5e-17 Score=117.74 Aligned_cols=76 Identities=17% Similarity=0.244 Sum_probs=70.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHccCCCc-eEEEEeeCC----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEE
Q psy4057 168 QPPNQILFLTNLPEETSEMMLSMLFNQFPGF-KEVRLVPNR----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKIS 242 (246)
Q Consensus 168 ~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i-~~v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~ 242 (246)
..+.++|||+|||.++|+++|+++|+.||.| ..|+++.++ +|||||+|.+.++|.+|+.. ||..|+ |+.|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~-gr~i~v~ 89 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLN-GREAFVH 89 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEET-TEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccC-CeEEEEE
Confidence 4468999999999999999999999999999 889998865 68999999999999999987 999999 9999999
Q ss_pred eec
Q psy4057 243 FAK 245 (246)
Q Consensus 243 ~ak 245 (246)
+|+
T Consensus 90 ~a~ 92 (114)
T 2cpy_A 90 VVT 92 (114)
T ss_dssp EEC
T ss_pred ECC
Confidence 986
No 299
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.72 E-value=1.8e-17 Score=126.23 Aligned_cols=82 Identities=21% Similarity=0.310 Sum_probs=76.0
Q ss_pred CCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccC--CCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEE
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKT--LKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQY 84 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~--~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 84 (246)
...++++|||+|||.++++++|+++|++||.|.+|.+..+ ++++|||||+|.+.++|.+|++.|||..+.|++|.|.+
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456789999999999999999999999999999999876 47889999999999999999999999999999999999
Q ss_pred ccCC
Q psy4057 85 SKTD 88 (246)
Q Consensus 85 a~~~ 88 (246)
|...
T Consensus 164 a~~~ 167 (177)
T 2f3j_A 164 VASQ 167 (177)
T ss_dssp ESSG
T ss_pred ecCC
Confidence 8654
No 300
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.72 E-value=2e-17 Score=111.19 Aligned_cols=73 Identities=18% Similarity=0.377 Sum_probs=68.2
Q ss_pred CCCCcEEEecCCChhhhHHHHHHHhhcc----C-------CeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccC
Q psy4057 8 ICVTNFVYVTHISSTDLKKSLYAIFSQF----G-------QIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFY 76 (246)
Q Consensus 8 ~~~~~~l~V~nl~~~~~e~~l~~~F~~f----G-------~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~ 76 (246)
..+.++|||+|||.++++++|+++|++| | .|.++.+.+ ++|||||+|.+.++|.+|+ .|||..+.
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~---~kg~afV~f~~~~~a~~A~-~l~g~~~~ 78 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ---DKNFAFLEFRSVDETTQAM-AFDGIIFQ 78 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECS---SSSEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecC---CCcEEEEEcCCHHHHHHHH-hcCCCEEC
Confidence 4678999999999999999999999999 8 899998875 4899999999999999999 99999999
Q ss_pred CeeEEEEE
Q psy4057 77 DKPMRIQY 84 (246)
Q Consensus 77 g~~l~v~~ 84 (246)
|++|+|.+
T Consensus 79 g~~l~V~r 86 (87)
T 2hzc_A 79 GQSLKIRR 86 (87)
T ss_dssp TEECEEEC
T ss_pred CeEEEEeC
Confidence 99999975
No 301
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=3e-17 Score=113.78 Aligned_cols=76 Identities=30% Similarity=0.493 Sum_probs=67.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEE
Q psy4057 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKI 241 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v 241 (246)
..++.++|||+|||.++++++|+++|+.|+ .++++.++ +|||||+|.+.++|..|+..|||..|. |+.|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~l~V 86 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEID-GNKVTL 86 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEET-TEECEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeEC-CeEEEE
Confidence 455789999999999999999999999875 45566554 589999999999999999999999999 999999
Q ss_pred EeecC
Q psy4057 242 SFAKK 246 (246)
Q Consensus 242 ~~ak~ 246 (246)
.||+.
T Consensus 87 ~~a~~ 91 (102)
T 2fc8_A 87 DWAKP 91 (102)
T ss_dssp EECCC
T ss_pred EEecC
Confidence 99873
No 302
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.56 E-value=4.8e-19 Score=125.88 Aligned_cols=84 Identities=24% Similarity=0.369 Sum_probs=76.8
Q ss_pred CCCCCcEEEecCCChhhhHHHHHHHhhccCCeeE--------EEEccC---CCCccEEEEEEcCHHHHHHHHHHhcCCcc
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMD--------IVALKT---LKMRGQAFVIFKEIASATNALRSMQGFPF 75 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~--------v~~~~~---~~~kg~aFV~f~~~~~A~~Ai~~lng~~~ 75 (246)
..+++++|||+|||.++++++|+++|++||.|.. |.++.+ ++++|||||+|.+.++|.+|++.|||..+
T Consensus 3 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 3 DNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 4578899999999999999999999999999998 888766 37889999999999999999999999999
Q ss_pred CCeeEEEEEccCCcc
Q psy4057 76 YDKPMRIQYSKTDSD 90 (246)
Q Consensus 76 ~g~~l~v~~a~~~~~ 90 (246)
.|++|+|.++..+..
T Consensus 83 ~g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 83 SGNPIKVSFATRRAD 97 (116)
Confidence 999999999876643
No 303
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.71 E-value=2e-17 Score=120.25 Aligned_cols=77 Identities=17% Similarity=0.103 Sum_probs=71.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHccCCC---ceEEEEeeCC----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCce
Q psy4057 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPG---FKEVRLVPNR----HDIAFVEFENEMQSAAAKLALHGFKITPTHAM 239 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~---i~~v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l 239 (246)
.....++|||+|||+++|+++|+++|+.||. |.+|+++.++ +|||||+|.+.++|.+|++ |||..++ |+.|
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~-gr~i 117 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMG-HRYI 117 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESS-SSEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEEC-CEEE
Confidence 3446899999999999999999999999999 8899999875 5899999999999999999 9999999 9999
Q ss_pred EEEeec
Q psy4057 240 KISFAK 245 (246)
Q Consensus 240 ~v~~ak 245 (246)
+|.+|+
T Consensus 118 ~V~~a~ 123 (136)
T 2hgl_A 118 EVFKSH 123 (136)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 999875
No 304
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=2.5e-17 Score=112.50 Aligned_cols=79 Identities=13% Similarity=0.132 Sum_probs=68.4
Q ss_pred CCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEcc
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSK 86 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~ 86 (246)
+....++|||+|||.++++++|+++|++||.|.+| + .+.....||||+|.+.++|.+|++ |||..+.|++|.|.++.
T Consensus 4 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v-~-~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 4 GSSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV-V-MDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp CCTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE-E-ECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSC
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE-E-EcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECC
Confidence 34567899999999999999999999999999998 2 332221299999999999999999 99999999999999876
Q ss_pred CC
Q psy4057 87 TD 88 (246)
Q Consensus 87 ~~ 88 (246)
..
T Consensus 81 ~~ 82 (94)
T 2e5g_A 81 QK 82 (94)
T ss_dssp CS
T ss_pred cC
Confidence 54
No 305
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.71 E-value=2.1e-17 Score=117.12 Aligned_cols=72 Identities=15% Similarity=0.163 Sum_probs=65.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCCccEEEEEeCCHHHHHHHHHHhCCCccCCCCc-----eEEEee
Q psy4057 170 PNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHA-----MKISFA 244 (246)
Q Consensus 170 ~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~-----l~v~~a 244 (246)
..++|||+|||.++++++|+++|++||.|..+.++.+ |||||+|.+.++|..|++.|||..|+ |+. ++|..+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~-gr~~~~~~i~v~~~ 91 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFR-SHEGETAYIRVKVD 91 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT--SEEEEEESSHHHHHHHHHHHTTCBCC-CTTSCCCBCEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC--CEEEEEECCHHHHHHHHHHhCCCEEC-CcEeeeEEEEeccC
Confidence 4789999999999999999999999999999999988 89999999999999999999999999 888 666554
No 306
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=5e-17 Score=112.60 Aligned_cols=76 Identities=14% Similarity=0.173 Sum_probs=68.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEE
Q psy4057 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKIS 242 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~ 242 (246)
.....++|||+|||+++|+++|+++|+.||. .+|+++.++ +|||||+|.+.++|.+|++ +|+..|+ |+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~-gr~i~V~ 87 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQ-HRYVELF 87 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSS-SSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeEC-CcEEEEE
Confidence 3446889999999999999999999999995 499999875 5799999999999999995 8999999 9999999
Q ss_pred eec
Q psy4057 243 FAK 245 (246)
Q Consensus 243 ~ak 245 (246)
++.
T Consensus 88 ~~~ 90 (102)
T 1wez_A 88 LNS 90 (102)
T ss_dssp EEC
T ss_pred ECC
Confidence 875
No 307
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.71 E-value=2.1e-17 Score=121.68 Aligned_cols=78 Identities=26% Similarity=0.468 Sum_probs=69.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceE--------EEEeeC--CccEEEEEeCCHHHHHHHHHHhCCCccCCC
Q psy4057 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKE--------VRLVPN--RHDIAFVEFENEMQSAAAKLALHGFKITPT 236 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~--------v~~~~~--~~g~afV~f~~~~~A~~Al~~l~g~~i~~g 236 (246)
...++++|||+|||.++|+++|+.+|+.||.|.. +++... .+|||||+|.+.++|..|+..|||..|+ |
T Consensus 41 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~-g 119 (143)
T 3egn_A 41 PGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLF-G 119 (143)
T ss_dssp CCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEET-T
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeC-C
Confidence 3557899999999999999999999999999865 444442 2689999999999999999999999999 9
Q ss_pred CceEEEeec
Q psy4057 237 HAMKISFAK 245 (246)
Q Consensus 237 ~~l~v~~ak 245 (246)
++|+|.||+
T Consensus 120 ~~l~V~~a~ 128 (143)
T 3egn_A 120 KPMVVQFAR 128 (143)
T ss_dssp EECEEEECC
T ss_pred cEEEEEECC
Confidence 999999996
No 308
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.71 E-value=1.4e-17 Score=132.10 Aligned_cols=79 Identities=13% Similarity=0.142 Sum_probs=72.5
Q ss_pred CCcEEEecCCChhhhHHHHHHHhhccC--CeeEEEEccCC---CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEE
Q psy4057 10 VTNFVYVTHISSTDLKKSLYAIFSQFG--QIMDIVALKTL---KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQY 84 (246)
Q Consensus 10 ~~~~l~V~nl~~~~~e~~l~~~F~~fG--~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 84 (246)
..++|||+||+.++++++|+++|++|| .|.+|.|+++. +++|||||+|.+.++|.+||+.||+..|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 467899999999999999999999999 99999998764 7899999999999999999999999999999999999
Q ss_pred ccCC
Q psy4057 85 SKTD 88 (246)
Q Consensus 85 a~~~ 88 (246)
+...
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8543
No 309
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.71 E-value=6.3e-18 Score=118.30 Aligned_cols=80 Identities=13% Similarity=0.085 Sum_probs=73.2
Q ss_pred CCCCCcEEEecCCChhhhHHHHHHHhhccCC---eeEEEEccCC--CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEE
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLYAIFSQFGQ---IMDIVALKTL--KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMR 81 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~---i~~v~~~~~~--~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~ 81 (246)
......+|||+|||+++++++|+++|+.||. |.+|.++.+. +++|||||+|.+.++|.+|++ +|+..+.|++|.
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 3456789999999999999999999999998 8999988764 789999999999999999999 999999999999
Q ss_pred EEEccC
Q psy4057 82 IQYSKT 87 (246)
Q Consensus 82 v~~a~~ 87 (246)
|.++..
T Consensus 86 V~~a~~ 91 (107)
T 2lmi_A 86 VYEINN 91 (107)
T ss_dssp CEECCH
T ss_pred EEECCH
Confidence 999753
No 310
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.71 E-value=4.8e-17 Score=116.22 Aligned_cols=75 Identities=20% Similarity=0.383 Sum_probs=68.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCCccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEeecC
Q psy4057 168 QPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246 (246)
Q Consensus 168 ~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~ak~ 246 (246)
..++++|||+|| ++|+++|+++|++||.|.+|.+... +|||||+|.+.++|..|+..|||..+. |+.|+|.||+.
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~~-kg~aFV~f~~~~~A~~Ai~~lng~~~~-g~~l~V~~a~~ 110 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPP-RNCAFVTYEKMESADQAVAELNGTQVE-SVQLKVNIARK 110 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEETT-TTEEEEECSSHHHHHHHHHHHTTCBCS-SCBCEEEECCS
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCEEC-CeEEEEEEeCC
Confidence 456899999996 6999999999999999999999744 489999999999999999999999999 99999999873
No 311
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4.3e-18 Score=122.39 Aligned_cols=80 Identities=16% Similarity=0.182 Sum_probs=70.3
Q ss_pred CCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEc---cCCCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEE
Q psy4057 8 ICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVAL---KTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQY 84 (246)
Q Consensus 8 ~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~---~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 84 (246)
..+.++|||+|||+++++++|+++|++||.|.++.++ .+++++|||||+|.+.++|.+|++ |||..+.|++|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 3456899999999999999999999999999773333 344789999999999999999999 999999999999999
Q ss_pred ccCC
Q psy4057 85 SKTD 88 (246)
Q Consensus 85 a~~~ 88 (246)
+..+
T Consensus 101 a~~~ 104 (124)
T 1wel_A 101 ITKK 104 (124)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8543
No 312
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.71 E-value=4.1e-17 Score=129.01 Aligned_cols=80 Identities=23% Similarity=0.305 Sum_probs=71.8
Q ss_pred CCCCcEEEecCCChhh---------hHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCcc---
Q psy4057 8 ICVTNFVYVTHISSTD---------LKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPF--- 75 (246)
Q Consensus 8 ~~~~~~l~V~nl~~~~---------~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~--- 75 (246)
..++++|||+||+.++ ++++|+++|++||+|++|.++. ++|||||+|.+.++|+.|++.|+|..+
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~---~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~ 207 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE---SKNCGFVKFKYQANAEFAKEAMSNQTLLLP 207 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG---GGTEEEEEESSHHHHHHHHHHHTTCCCCCT
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC---CCCEEEEEeCCHHHHHHHHHHhCCCEEecc
Confidence 4568999999999998 8999999999999999999986 689999999999999999999999999
Q ss_pred ---------CCeeEEEEEccCCcc
Q psy4057 76 ---------YDKPMRIQYSKTDSD 90 (246)
Q Consensus 76 ---------~g~~l~v~~a~~~~~ 90 (246)
.|+.|.|.||..++.
T Consensus 208 ~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 208 SDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp TSTTGGGGGGSCCCEEEECC----
T ss_pred ccccccccCCCCEEEEEEccCCCC
Confidence 899999999976643
No 313
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.71 E-value=8.4e-18 Score=116.41 Aligned_cols=75 Identities=21% Similarity=0.286 Sum_probs=67.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeC-----CccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEE
Q psy4057 168 QPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPN-----RHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKIS 242 (246)
Q Consensus 168 ~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~-----~~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~ 242 (246)
..+.++|||+|||.++|+++|+++|+.||.|.. .++.+ .+|||||+|.+.++|.+|++ |||..|. |+.|+|.
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~-g~~l~V~ 90 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVF-GNEIKLE 90 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBT-TBCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEEC-CcEEEEE
Confidence 346889999999999999999999999999876 44433 25899999999999999999 9999999 9999999
Q ss_pred eec
Q psy4057 243 FAK 245 (246)
Q Consensus 243 ~ak 245 (246)
||+
T Consensus 91 ~a~ 93 (101)
T 1fj7_A 91 KPK 93 (101)
T ss_dssp CCS
T ss_pred EcC
Confidence 986
No 314
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.71 E-value=2.1e-17 Score=117.14 Aligned_cols=75 Identities=17% Similarity=0.222 Sum_probs=66.6
Q ss_pred CCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccCCee-----EEEE
Q psy4057 9 CVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKP-----MRIQ 83 (246)
Q Consensus 9 ~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~-----l~v~ 83 (246)
...++|||+|||.++++++|+++|++||.|.+|.++.+ |||||+|.+.++|.+|++.|||..+.|++ |+|.
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~----g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~ 89 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 89 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT----SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC----CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEec
Confidence 35689999999999999999999999999999999876 99999999999999999999999999999 6666
Q ss_pred EccC
Q psy4057 84 YSKT 87 (246)
Q Consensus 84 ~a~~ 87 (246)
.+..
T Consensus 90 ~~~~ 93 (115)
T 3beg_B 90 VDGP 93 (115)
T ss_dssp ECC-
T ss_pred cCCC
Confidence 6543
No 315
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.70 E-value=5e-17 Score=109.78 Aligned_cols=75 Identities=20% Similarity=0.278 Sum_probs=64.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCCccEEEEEeCCHHHHHHHHHHhCCCccC-CCCceEEEeec
Q psy4057 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKIT-PTHAMKISFAK 245 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~-~g~~l~v~~ak 245 (246)
..++..+|||+|||.++|+++|+++|++||.|.+++++.+.+|||||+|.+.++|. .|+|..+. .|+.|.|.+|+
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~----~~~~~~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQ----SLCGEDLIIKGISVHISNAE 82 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHH----HHTTCEEEETTEEEEEEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHH----HHcCCCcccCCEEEEEEEcC
Confidence 45579999999999999999999999999999999999988899999999999997 36776542 28999999986
No 316
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.70 E-value=9.7e-18 Score=116.29 Aligned_cols=81 Identities=15% Similarity=0.270 Sum_probs=73.5
Q ss_pred CCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC--CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEE
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL--KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQY 84 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~--~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 84 (246)
...++++|||+|||.++++++|+++|++||.|.+|.++++. +++|||||+|.+.++|.+|++ ++..+.|++|.|.+
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~ 82 (102)
T 2xs2_A 5 GKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGP 82 (102)
T ss_dssp CEEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEE
Confidence 34567999999999999999999999999999999998864 678999999999999999999 99999999999999
Q ss_pred ccCCc
Q psy4057 85 SKTDS 89 (246)
Q Consensus 85 a~~~~ 89 (246)
+....
T Consensus 83 a~~~~ 87 (102)
T 2xs2_A 83 AIRKQ 87 (102)
T ss_dssp EEECC
T ss_pred CCcCc
Confidence 86543
No 317
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.70 E-value=4.1e-17 Score=116.56 Aligned_cols=78 Identities=23% Similarity=0.323 Sum_probs=71.5
Q ss_pred CCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEcc
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSK 86 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~ 86 (246)
...++++|||+|+ ++++++|+++|++||.|.+|.+. +++|||||+|.+.++|.+|++.|||..+.|++|+|.++.
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~ 109 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD---PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 109 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe---CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeC
Confidence 3467899999996 69999999999999999999885 589999999999999999999999999999999999987
Q ss_pred CCc
Q psy4057 87 TDS 89 (246)
Q Consensus 87 ~~~ 89 (246)
...
T Consensus 110 ~~~ 112 (121)
T 2bz2_A 110 KQP 112 (121)
T ss_dssp SSC
T ss_pred CCC
Confidence 653
No 318
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=4.3e-17 Score=114.07 Aligned_cols=73 Identities=14% Similarity=0.183 Sum_probs=67.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEeec
Q psy4057 170 PNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAK 245 (246)
Q Consensus 170 ~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~ak 245 (246)
...+|||+|||+++|+++|+++|+.| .|.+|+++.++ +|||||+|.+.++|.+|+ .|||..++ |+.|.|..|+
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~-gr~i~V~~a~ 91 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMI-QRYVEVSPAT 91 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEET-TEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeEC-CeEEEEEECC
Confidence 46899999999999999999999999 89999999865 589999999999999999 69999999 9999998874
No 319
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.70 E-value=2.1e-17 Score=115.57 Aligned_cols=77 Identities=16% Similarity=0.118 Sum_probs=70.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHccCCC---ceEEEEeeCC----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCce
Q psy4057 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPG---FKEVRLVPNR----HDIAFVEFENEMQSAAAKLALHGFKITPTHAM 239 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~---i~~v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l 239 (246)
.....++|||+|||.++|+++|+++|+.||. |..|+++.++ +|||||+|.+.++|.+|+. |||..++ |+.|
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~-gr~i 84 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMG-QRYV 84 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSS-SSCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeC-CeEE
Confidence 3456899999999999999999999999998 8999999865 5899999999999999999 9999999 9999
Q ss_pred EEEeec
Q psy4057 240 KISFAK 245 (246)
Q Consensus 240 ~v~~ak 245 (246)
+|.+|+
T Consensus 85 ~V~~a~ 90 (107)
T 2lmi_A 85 EVYEIN 90 (107)
T ss_dssp CCEECC
T ss_pred EEEECC
Confidence 999875
No 320
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.70 E-value=9.2e-17 Score=111.64 Aligned_cols=76 Identities=18% Similarity=0.227 Sum_probs=68.2
Q ss_pred CCCcEEEEcCCCC-----CCCHHHHHHHHccCCCceEEEEeeCC------ccEEEEEeCCHHHHHHHHHHhCCCccCCCC
Q psy4057 169 PPNQILFLTNLPE-----ETSEMMLSMLFNQFPGFKEVRLVPNR------HDIAFVEFENEMQSAAAKLALHGFKITPTH 237 (246)
Q Consensus 169 ~~~~~l~v~nL~~-----~~t~e~l~~~f~~~G~i~~v~~~~~~------~g~afV~f~~~~~A~~Al~~l~g~~i~~g~ 237 (246)
.++++|+|+||.. +-++++|+++|++||.|.+++++.++ +|+|||+|.+.++|.+|+..|||+.|+ |+
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~-Gr 84 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFG-GR 84 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEET-TE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEEC-Cc
Confidence 4799999999963 23789999999999999999999753 589999999999999999999999999 99
Q ss_pred ceEEEeec
Q psy4057 238 AMKISFAK 245 (246)
Q Consensus 238 ~l~v~~ak 245 (246)
.|+|.|++
T Consensus 85 ~i~v~~a~ 92 (105)
T 2pe8_A 85 VVKACFYN 92 (105)
T ss_dssp ECEEEECC
T ss_pred EEEEEEcC
Confidence 99999985
No 321
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.70 E-value=3.4e-17 Score=129.76 Aligned_cols=75 Identities=17% Similarity=0.166 Sum_probs=70.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHccCC--CceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEE
Q psy4057 170 PNQILFLTNLPEETSEMMLSMLFNQFP--GFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKIS 242 (246)
Q Consensus 170 ~~~~l~v~nL~~~~t~e~l~~~f~~~G--~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~ 242 (246)
..++|||+|||.++|+++|+++|+.|| .|.+|+|+.++ +|||||+|.+.++|.+||+.|||..|. |+.|+|.
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~-Gr~l~V~ 145 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELH-GQNPVVT 145 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBT-TBCCEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeEC-CEEeEEE
Confidence 578999999999999999999999999 99999999975 589999999999999999999999999 9999999
Q ss_pred eec
Q psy4057 243 FAK 245 (246)
Q Consensus 243 ~ak 245 (246)
||+
T Consensus 146 ~a~ 148 (229)
T 3q2s_C 146 PVN 148 (229)
T ss_dssp ECC
T ss_pred ECC
Confidence 986
No 322
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.70 E-value=8.4e-17 Score=122.53 Aligned_cols=78 Identities=22% Similarity=0.273 Sum_probs=72.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEE
Q psy4057 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKIS 242 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~ 242 (246)
...++++|||+|||..+++++|+++|+.||.|..|.++.++ +|||||+|.+.++|..|+..|||..|+ |+.|+|.
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~-Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLD-GRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCS-SSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEEC-CEEEEEE
Confidence 34568999999999999999999999999999999999864 589999999999999999999999999 9999999
Q ss_pred eec
Q psy4057 243 FAK 245 (246)
Q Consensus 243 ~ak 245 (246)
||.
T Consensus 163 ~a~ 165 (177)
T 2f3j_A 163 LVA 165 (177)
T ss_dssp EES
T ss_pred Eec
Confidence 985
No 323
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.69 E-value=5.1e-17 Score=127.59 Aligned_cols=79 Identities=23% Similarity=0.389 Sum_probs=73.9
Q ss_pred CCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC-CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEccCC
Q psy4057 10 VTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL-KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTD 88 (246)
Q Consensus 10 ~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~-~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~~~ 88 (246)
..++|||+|||.++++++|+++|++||.|.+|.++++. .++|||||+|.+.++|.+|++.|||..+.|++|.|.++..+
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCH
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence 45789999999999999999999999999999998865 57899999999999999999999999999999999998654
No 324
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.69 E-value=1.1e-17 Score=122.13 Aligned_cols=80 Identities=15% Similarity=0.173 Sum_probs=71.5
Q ss_pred CCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC--CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEc
Q psy4057 8 ICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL--KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYS 85 (246)
Q Consensus 8 ~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~--~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a 85 (246)
..+.++|||+|||+++++++|+++|++|| |.+|.|+.+. +++|||||+|.+.++|.+|+ .+|+..+.|++|.|.++
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 34678999999999999999999999999 7799998764 78999999999999999999 69999999999999998
Q ss_pred cCCc
Q psy4057 86 KTDS 89 (246)
Q Consensus 86 ~~~~ 89 (246)
....
T Consensus 121 ~~~~ 124 (139)
T 2hgn_A 121 STTG 124 (139)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 6543
No 325
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.69 E-value=8.8e-17 Score=120.76 Aligned_cols=80 Identities=25% Similarity=0.325 Sum_probs=74.6
Q ss_pred CCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccC---CCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEE
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKT---LKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~---~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~ 83 (246)
...++++|||+|||.++++++|+++|++||.|.++.+.++ +.++|+|||+|.+.++|.+|++.|||..+.|++|+|.
T Consensus 83 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 162 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN 162 (166)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Confidence 4566889999999999999999999999999999999866 3778999999999999999999999999999999999
Q ss_pred Ecc
Q psy4057 84 YSK 86 (246)
Q Consensus 84 ~a~ 86 (246)
||+
T Consensus 163 ~a~ 165 (166)
T 3md3_A 163 WAA 165 (166)
T ss_dssp ESC
T ss_pred ecC
Confidence 985
No 326
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.69 E-value=1.9e-17 Score=108.15 Aligned_cols=70 Identities=17% Similarity=0.274 Sum_probs=65.3
Q ss_pred EEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEee
Q psy4057 173 ILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFA 244 (246)
Q Consensus 173 ~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~a 244 (246)
+|||+|||.++++++|+++|++||.|.++.++.++ +|||||+|.+.++|.+|++. +|..+. |+.|+|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~-g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVG-LSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBT-TBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeEC-CEEEEEEEC
Confidence 58999999999999999999999999999998764 58999999999999999984 999999 999999986
No 327
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=7.8e-17 Score=110.00 Aligned_cols=75 Identities=16% Similarity=0.200 Sum_probs=65.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCCccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEeec
Q psy4057 169 PPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAK 245 (246)
Q Consensus 169 ~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~ak 245 (246)
...++|||+|||.++|+++|+++|+.||.|.+|.+.+....||||+|.+.++|.+|+. |||..|+ |+.|+|.+|+
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~-g~~l~V~~a~ 80 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLG-GHRLRVRPRE 80 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEET-TEECCCBCSC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEEC-CEEEEEEECC
Confidence 3578999999999999999999999999999882222221299999999999999999 9999999 9999999875
No 328
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.8e-16 Score=111.77 Aligned_cols=83 Identities=18% Similarity=0.271 Sum_probs=72.8
Q ss_pred cCCCCCcEEEecCC--Chh---------hhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCc
Q psy4057 6 AHICVTNFVYVTHI--SST---------DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFP 74 (246)
Q Consensus 6 ~~~~~~~~l~V~nl--~~~---------~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~ 74 (246)
....|+++|+|.|| +.+ .++++|+++|++||.|.+|.| .+..++|||||+|.+.++|.+|+..|||..
T Consensus 10 ~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 10 SRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDRHPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETTCTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecCCCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 35678999999999 333 247899999999999999966 566789999999999999999999999999
Q ss_pred cCCeeEEEEEccCCc
Q psy4057 75 FYDKPMRIQYSKTDS 89 (246)
Q Consensus 75 ~~g~~l~v~~a~~~~ 89 (246)
+.|++|+|.++....
T Consensus 89 ~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 89 FGGRQITAQAWDGTT 103 (112)
T ss_dssp ETTEECEEEECCSCC
T ss_pred ECCcEEEEEEeCCCC
Confidence 999999999987654
No 329
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.52 E-value=1.9e-18 Score=122.81 Aligned_cols=78 Identities=24% Similarity=0.348 Sum_probs=72.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHccCCCceE--------EEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccC
Q psy4057 168 QPPNQILFLTNLPEETSEMMLSMLFNQFPGFKE--------VRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKIT 234 (246)
Q Consensus 168 ~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~--------v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~ 234 (246)
.+++++|||+|||.++++++|+++|++||.|.. ++++.++ +|||||+|.+.++|..|+..|||..+.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 457899999999999999999999999999998 8888764 589999999999999999999999999
Q ss_pred CCCceEEEeecC
Q psy4057 235 PTHAMKISFAKK 246 (246)
Q Consensus 235 ~g~~l~v~~ak~ 246 (246)
|++|+|.||+.
T Consensus 84 -g~~l~V~~a~~ 94 (116)
T 2lcw_A 84 -GNPIKVSFATR 94 (116)
Confidence 99999999863
No 330
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.69 E-value=6.1e-17 Score=128.02 Aligned_cols=78 Identities=17% Similarity=0.352 Sum_probs=71.7
Q ss_pred CCCCCcEEEEcCCCCCC---------CHHHHHHHHccCCCceEEEEeeCCccEEEEEeCCHHHHHHHHHHhCCCcc----
Q psy4057 167 EQPPNQILFLTNLPEET---------SEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKI---- 233 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~~---------t~e~l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i---- 233 (246)
....+++|||+||+..+ ++++|+.+|++||.|.+|+++.++ |||||+|.+.++|..|++.|||..+
T Consensus 130 ~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~k-G~AFV~F~~~~~Ae~A~~am~g~~l~~~~ 208 (240)
T 3u1l_A 130 FRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESK-NCGFVKFKYQANAEFAKEAMSNQTLLLPS 208 (240)
T ss_dssp -CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGG-TEEEEEESSHHHHHHHHHHHTTCCCCCTT
T ss_pred cccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCC-CEEEEEeCCHHHHHHHHHHhCCCEEeccc
Confidence 35579999999999998 799999999999999999999865 9999999999999999999999999
Q ss_pred --------CCCCceEEEeecC
Q psy4057 234 --------TPTHAMKISFAKK 246 (246)
Q Consensus 234 --------~~g~~l~v~~ak~ 246 (246)
. |+.|.|.||+.
T Consensus 209 ~~e~~~~~~-gr~L~V~wA~~ 228 (240)
T 3u1l_A 209 DKEWDDRRE-GTGLLVKWANE 228 (240)
T ss_dssp STTGGGGGG-SCCCEEEECC-
T ss_pred cccccccCC-CCEEEEEEccC
Confidence 6 99999999973
No 331
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.69 E-value=5.1e-17 Score=116.36 Aligned_cols=78 Identities=22% Similarity=0.216 Sum_probs=69.9
Q ss_pred CCCCCcEEEecCCChhhhHHHHHHHhhccCCee--EEEEccCC--CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEE
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLYAIFSQFGQIM--DIVALKTL--KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRI 82 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~--~v~~~~~~--~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v 82 (246)
...+.++|||+|||+++++++|+++|++|+ |. +|.++.+. +++|||||+|.+.++|++|++ +++..+.|++|.|
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~~-i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V 115 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGLE-IVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIEV 115 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCC-ceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEE
Confidence 345678999999999999999999999995 77 89888654 789999999999999999999 5789999999999
Q ss_pred EEcc
Q psy4057 83 QYSK 86 (246)
Q Consensus 83 ~~a~ 86 (246)
.++.
T Consensus 116 ~~a~ 119 (126)
T 2hgm_A 116 FKSS 119 (126)
T ss_dssp EEEC
T ss_pred EECC
Confidence 9874
No 332
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.68 E-value=1e-16 Score=127.26 Aligned_cols=78 Identities=23% Similarity=0.418 Sum_probs=74.4
Q ss_pred CCCCCcEEEEcCCCC-CCCHHHHHHHHccCCCceEEEEeeCCccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEeec
Q psy4057 167 EQPPNQILFLTNLPE-ETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAK 245 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~-~~t~e~l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~ak 245 (246)
..+++++|||+|||. ++++++|+++|+.||.|.+|+++.+++|||||+|.+.++|..|++.|||..+. |+.|+|.|++
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~-g~~l~v~~a~ 108 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLH-GKPIRITLSK 108 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCS-SSBCEEECCS
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeEC-CeEEEEEEec
Confidence 345799999999999 99999999999999999999999999999999999999999999999999999 9999999986
No 333
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.68 E-value=7.4e-17 Score=108.42 Aligned_cols=71 Identities=23% Similarity=0.371 Sum_probs=67.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHccC----C-------CceEEEEeeCCccEEEEEeCCHHHHHHHHHHhCCCccCCCCc
Q psy4057 170 PNQILFLTNLPEETSEMMLSMLFNQF----P-------GFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHA 238 (246)
Q Consensus 170 ~~~~l~v~nL~~~~t~e~l~~~f~~~----G-------~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~ 238 (246)
+.++|||+|||.++++++|+++|++| | .|.++++..++ |||||+|.+.++|.+|+ .|||..+. |+.
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~k-g~afV~f~~~~~a~~A~-~l~g~~~~-g~~ 81 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDK-NFAFLEFRSVDETTQAM-AFDGIIFQ-GQS 81 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSS-SEEEEEESSHHHHHHHG-GGTTCEET-TEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCC-cEEEEEcCCHHHHHHHH-hcCCCEEC-CeE
Confidence 58999999999999999999999999 8 89999999875 89999999999999999 99999999 999
Q ss_pred eEEEe
Q psy4057 239 MKISF 243 (246)
Q Consensus 239 l~v~~ 243 (246)
|+|+.
T Consensus 82 l~V~r 86 (87)
T 2hzc_A 82 LKIRR 86 (87)
T ss_dssp CEEEC
T ss_pred EEEeC
Confidence 99873
No 334
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=3e-17 Score=110.66 Aligned_cols=77 Identities=22% Similarity=0.310 Sum_probs=66.7
Q ss_pred CCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEccCC
Q psy4057 9 CVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTD 88 (246)
Q Consensus 9 ~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~~~ 88 (246)
.++++|||+|||.++++++|+++|++||.|.+|.++++ ++|||||+|.+.++|++|... +..+.|++|.|.++..+
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~~ 78 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP--FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEPK 78 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS--CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC--CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCCC
Confidence 56899999999999999999999999999999999875 899999999999999764331 24558999999998765
Q ss_pred c
Q psy4057 89 S 89 (246)
Q Consensus 89 ~ 89 (246)
.
T Consensus 79 ~ 79 (88)
T 1wf0_A 79 H 79 (88)
T ss_dssp C
T ss_pred C
Confidence 4
No 335
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=2.7e-17 Score=117.53 Aligned_cols=77 Identities=23% Similarity=0.197 Sum_probs=69.5
Q ss_pred CCCcEEEecCCChhhhHHHHHHHhhccCCe----eEEEEccC--CCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEE
Q psy4057 9 CVTNFVYVTHISSTDLKKSLYAIFSQFGQI----MDIVALKT--LKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRI 82 (246)
Q Consensus 9 ~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i----~~v~~~~~--~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v 82 (246)
....+|||+|||+++++++|+++|++||.| ..|.++.+ ++++|||||+|.+.++|.+|++. |+..+.|+.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 567899999999999999999999999975 57877754 47899999999999999999995 999999999999
Q ss_pred EEcc
Q psy4057 83 QYSK 86 (246)
Q Consensus 83 ~~a~ 86 (246)
..+.
T Consensus 100 ~~a~ 103 (123)
T 2dha_A 100 FRST 103 (123)
T ss_dssp EEEC
T ss_pred EECC
Confidence 9874
No 336
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.68 E-value=1.9e-16 Score=110.06 Aligned_cols=80 Identities=15% Similarity=0.302 Sum_probs=70.4
Q ss_pred CCCCcEEEecCC--Ch--------hhhHHHHHHHhhccCCeeEEEEccCC-----CCccEEEEEEcCHHHHHHHHHHhcC
Q psy4057 8 ICVTNFVYVTHI--SS--------TDLKKSLYAIFSQFGQIMDIVALKTL-----KMRGQAFVIFKEIASATNALRSMQG 72 (246)
Q Consensus 8 ~~~~~~l~V~nl--~~--------~~~e~~l~~~F~~fG~i~~v~~~~~~-----~~kg~aFV~f~~~~~A~~Ai~~lng 72 (246)
..|+++|.+.|+ +. +.++++|++.|++||.|.+|.|+++. +++|+|||+|.+.++|.+|++.|||
T Consensus 2 g~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 2 GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp CSCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 368999999887 22 23568999999999999999998764 5789999999999999999999999
Q ss_pred CccCCeeEEEEEccC
Q psy4057 73 FPFYDKPMRIQYSKT 87 (246)
Q Consensus 73 ~~~~g~~l~v~~a~~ 87 (246)
..+.||+|+|.++..
T Consensus 82 ~~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 82 RKFANRVVVTKYCDP 96 (105)
T ss_dssp CEETTEECEEEEECH
T ss_pred CEeCCCEEEEEEeCH
Confidence 999999999999743
No 337
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.67 E-value=2.2e-16 Score=123.85 Aligned_cols=81 Identities=21% Similarity=0.351 Sum_probs=75.6
Q ss_pred CCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC---CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEc
Q psy4057 9 CVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL---KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYS 85 (246)
Q Consensus 9 ~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a 85 (246)
.+.++|||+|||.++++++|+++|++||.|..|.+.++. +++|||||+|.+.++|.+|++.|||..+.|++|.|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 567899999999999999999999999999999998764 67899999999999999999999999999999999998
Q ss_pred cCCc
Q psy4057 86 KTDS 89 (246)
Q Consensus 86 ~~~~ 89 (246)
....
T Consensus 203 ~~~~ 206 (216)
T 2qfj_A 203 VTPP 206 (216)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 7654
No 338
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.67 E-value=3e-16 Score=117.98 Aligned_cols=75 Identities=21% Similarity=0.445 Sum_probs=70.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEee
Q psy4057 170 PNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFA 244 (246)
Q Consensus 170 ~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~a 244 (246)
++++|||+|||.++++++|+++|+.||.|.+++++.++ +|||||+|.+.++|..|++.|||..+. |++|+|.|+
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~-g~~l~v~~~ 79 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQ-TKTIKVSYA 79 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET-TEECEEEEC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccC-CceEEEEec
Confidence 36899999999999999999999999999999999876 489999999999999999999999999 999999998
Q ss_pred c
Q psy4057 245 K 245 (246)
Q Consensus 245 k 245 (246)
+
T Consensus 80 ~ 80 (167)
T 1fxl_A 80 R 80 (167)
T ss_dssp C
T ss_pred C
Confidence 5
No 339
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=2.2e-16 Score=111.67 Aligned_cols=76 Identities=18% Similarity=0.193 Sum_probs=64.3
Q ss_pred CCCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccC------CCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeE
Q psy4057 7 HICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKT------LKMRGQAFVIFKEIASATNALRSMQGFPFYDKPM 80 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~------~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l 80 (246)
...++++|||+|||.++++++|+++|++||.|. +.++.+ ++++|||||+|.+.++|++|++.|++ +.|+.+
T Consensus 4 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~G~~~ 80 (114)
T 2dnl_A 4 GSSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--EDGKLY 80 (114)
T ss_dssp SSSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ETTEEE
T ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cCCcEE
Confidence 346789999999999999999999999999999 777765 36799999999999999999998843 566666
Q ss_pred EEEEc
Q psy4057 81 RIQYS 85 (246)
Q Consensus 81 ~v~~a 85 (246)
.+..+
T Consensus 81 ~~~~~ 85 (114)
T 2dnl_A 81 LCVSS 85 (114)
T ss_dssp EEECC
T ss_pred EeccC
Confidence 66544
No 340
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=5e-17 Score=109.58 Aligned_cols=72 Identities=21% Similarity=0.287 Sum_probs=64.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCCccEEEEEeCCHHHHHHHHHHhCCCcc--CCCCceEEEeec
Q psy4057 169 PPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKI--TPTHAMKISFAK 245 (246)
Q Consensus 169 ~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i--~~g~~l~v~~ak 245 (246)
.++++|||+|||.++++++|+++|++||.|.+++++.+.+|||||+|.+.++|++ +++..+ . |++|+|.+|+
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~----~~~~~~~~~-g~~l~v~~a~ 76 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQS----LCGEDLIIK-GISVHISNAE 76 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHH----TTTCEEEET-TEEEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHH----HhcCCceeC-CEEEEEEecC
Confidence 3689999999999999999999999999999999998888999999999999975 455544 6 8999999986
No 341
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.66 E-value=2.3e-16 Score=119.33 Aligned_cols=77 Identities=16% Similarity=0.285 Sum_probs=72.3
Q ss_pred CCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC---CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEc
Q psy4057 9 CVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL---KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYS 85 (246)
Q Consensus 9 ~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a 85 (246)
.+.++|||+|||.++++++|+++|++||.|.++.+.++. +++|||||+|.+.++|.+|++.|||..+.|++|.|.+|
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 446899999999999999999999999999999998763 67899999999999999999999999999999999987
No 342
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.66 E-value=2.7e-16 Score=118.41 Aligned_cols=75 Identities=28% Similarity=0.492 Sum_probs=71.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEee
Q psy4057 170 PNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFA 244 (246)
Q Consensus 170 ~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~a 244 (246)
++++|||+|||.++++++|+++|+.||.|.+++++.++ +|||||+|.+.++|..|++.|||..+. |++|+|.|+
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~-g~~l~v~~~ 80 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVR-NKRLKVSYA 80 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEET-TEECEEEEC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeC-CcEEEEEec
Confidence 57899999999999999999999999999999999865 479999999999999999999999999 999999998
Q ss_pred c
Q psy4057 245 K 245 (246)
Q Consensus 245 k 245 (246)
+
T Consensus 81 ~ 81 (168)
T 1b7f_A 81 R 81 (168)
T ss_dssp C
T ss_pred C
Confidence 6
No 343
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.66 E-value=8.4e-17 Score=111.52 Aligned_cols=75 Identities=17% Similarity=0.321 Sum_probs=69.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEe
Q psy4057 168 QPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISF 243 (246)
Q Consensus 168 ~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~ 243 (246)
...+++|||+|||.++++++|+++|++||.|.+++++.++ +|||||+|.+.++|..|+. +|..++ |+.|.|.+
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~-g~~l~v~~ 82 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFH-GKKLKLGP 82 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEET-TEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeEC-CEEEEEEE
Confidence 3458999999999999999999999999999999999975 5899999999999999999 999999 99999998
Q ss_pred ec
Q psy4057 244 AK 245 (246)
Q Consensus 244 ak 245 (246)
+.
T Consensus 83 a~ 84 (102)
T 2xs2_A 83 AI 84 (102)
T ss_dssp EE
T ss_pred CC
Confidence 74
No 344
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.66 E-value=2.6e-16 Score=135.81 Aligned_cols=81 Identities=16% Similarity=0.251 Sum_probs=75.0
Q ss_pred CCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccC---CCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEc
Q psy4057 9 CVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKT---LKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYS 85 (246)
Q Consensus 9 ~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~---~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a 85 (246)
.+.++|||+|||.++++++|.++|++||.|..|.|+.+ +.++|||||+|.+.++|..||+.|||..|.|++|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 45689999999999999999999999999999999865 478999999999999999999999999999999999998
Q ss_pred cCCc
Q psy4057 86 KTDS 89 (246)
Q Consensus 86 ~~~~ 89 (246)
....
T Consensus 180 ~~~~ 183 (437)
T 3pgw_S 180 RGRT 183 (437)
T ss_pred CCCC
Confidence 7543
No 345
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.66 E-value=1.9e-16 Score=122.76 Aligned_cols=75 Identities=24% Similarity=0.438 Sum_probs=72.2
Q ss_pred CCcEEEEcCCCC-CCCHHHHHHHHccCCCceEEEEeeCCccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEeec
Q psy4057 170 PNQILFLTNLPE-ETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAK 245 (246)
Q Consensus 170 ~~~~l~v~nL~~-~~t~e~l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~ak 245 (246)
.+++|||+|||. ++++++|+++|++||.|.+++++.+++|||||+|.+.++|..|+..|||..+. |+.|+|.|++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~-g~~l~v~~a~ 77 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLH-GKPIRITLSK 77 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCS-SCCCEEEECC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeec-CeEEEEEEec
Confidence 368999999999 99999999999999999999999998899999999999999999999999999 9999999986
No 346
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.66 E-value=2e-16 Score=113.24 Aligned_cols=76 Identities=16% Similarity=0.200 Sum_probs=67.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHccCCCce--EEEEeeCC----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceE
Q psy4057 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFK--EVRLVPNR----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMK 240 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~--~v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~ 240 (246)
.....++|||+|||+++|+++|+++|+.| .|. +|+++.++ +|||||+|.+.++|.+|++ +++..|+ |+.|+
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~-gR~I~ 114 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIG-HRYIE 114 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBT-TBCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEEC-CEEEE
Confidence 33467899999999999999999999999 676 89999865 5899999999999999998 5789999 99999
Q ss_pred EEeec
Q psy4057 241 ISFAK 245 (246)
Q Consensus 241 v~~ak 245 (246)
|.+|.
T Consensus 115 V~~a~ 119 (126)
T 2hgm_A 115 VFKSS 119 (126)
T ss_dssp CEEEC
T ss_pred EEECC
Confidence 98875
No 347
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.66 E-value=2.1e-16 Score=120.00 Aligned_cols=79 Identities=19% Similarity=0.253 Sum_probs=72.8
Q ss_pred CCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEccC
Q psy4057 8 ICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKT 87 (246)
Q Consensus 8 ~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~~ 87 (246)
..++++|||+|||.++++++|+++|++||.|..+ ..+++++|||||+|.+.++|.+|++.|||..+.|++|.|.|+.+
T Consensus 96 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~--~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 173 (175)
T 1fje_B 96 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 173 (175)
T ss_dssp TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE--CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSS
T ss_pred cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe--cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCC
Confidence 3467899999999999999999999999999887 55668999999999999999999999999999999999999875
Q ss_pred C
Q psy4057 88 D 88 (246)
Q Consensus 88 ~ 88 (246)
+
T Consensus 174 k 174 (175)
T 1fje_B 174 K 174 (175)
T ss_dssp C
T ss_pred C
Confidence 4
No 348
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.66 E-value=3.6e-16 Score=118.48 Aligned_cols=77 Identities=27% Similarity=0.419 Sum_probs=71.2
Q ss_pred CCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC--CCccEEEEEEcCHHHHHHHHHHhcCCccC---CeeEEEE
Q psy4057 9 CVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL--KMRGQAFVIFKEIASATNALRSMQGFPFY---DKPMRIQ 83 (246)
Q Consensus 9 ~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~--~~kg~aFV~f~~~~~A~~Ai~~lng~~~~---g~~l~v~ 83 (246)
.++++|||+|||.++++++|+++|++||.|.+|.+.++. +++|||||+|.+.++|.+|++.|||..+. |++|+|.
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~ 172 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVK 172 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEE
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEE
Confidence 367899999999999999999999999999999998764 67899999999999999999999998876 4999999
Q ss_pred Ec
Q psy4057 84 YS 85 (246)
Q Consensus 84 ~a 85 (246)
||
T Consensus 173 ~a 174 (175)
T 3nmr_A 173 FA 174 (175)
T ss_dssp EC
T ss_pred ec
Confidence 97
No 349
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.65 E-value=1.4e-16 Score=112.92 Aligned_cols=82 Identities=12% Similarity=0.219 Sum_probs=72.0
Q ss_pred cCCCCCcEEEecCCC-----hhhhHHHHHHHhhccCCeeEEEEccCC-------CCccEEEEEEcCHHHHHHHHHHhcCC
Q psy4057 6 AHICVTNFVYVTHIS-----STDLKKSLYAIFSQFGQIMDIVALKTL-------KMRGQAFVIFKEIASATNALRSMQGF 73 (246)
Q Consensus 6 ~~~~~~~~l~V~nl~-----~~~~e~~l~~~F~~fG~i~~v~~~~~~-------~~kg~aFV~f~~~~~A~~Ai~~lng~ 73 (246)
...+|+++|++.|+- .+..+++|++.|++||.|.+|.|+++. +++|+|||+|.+.++|.+|++.|||.
T Consensus 15 ~~~~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr 94 (118)
T 3ue2_A 15 LRKQESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGR 94 (118)
T ss_dssp HHHHSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCC
Confidence 345689999999983 245789999999999999999998763 35699999999999999999999999
Q ss_pred ccCCeeEEEEEccC
Q psy4057 74 PFYDKPMRIQYSKT 87 (246)
Q Consensus 74 ~~~g~~l~v~~a~~ 87 (246)
.|.||+|+|.++..
T Consensus 95 ~f~GR~i~v~~~~~ 108 (118)
T 3ue2_A 95 WFAGRKVVAEVYDQ 108 (118)
T ss_dssp EETTEECEEEEECH
T ss_pred EECCcEEEEEEcCh
Confidence 99999999999743
No 350
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.65 E-value=1.4e-16 Score=119.93 Aligned_cols=78 Identities=22% Similarity=0.327 Sum_probs=72.7
Q ss_pred CCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccC---CCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEcc
Q psy4057 10 VTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKT---LKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSK 86 (246)
Q Consensus 10 ~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~---~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~ 86 (246)
++++|||+|||.++++++|+++|++||.|.++.+..+ ++++|||||+|.+.++|.+|++ ++|..+.|++|.|.++.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 4679999999999999999999999999999999875 4788999999999999999998 89999999999999986
Q ss_pred CC
Q psy4057 87 TD 88 (246)
Q Consensus 87 ~~ 88 (246)
++
T Consensus 165 pk 166 (167)
T 2cjk_A 165 PR 166 (167)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 351
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.65 E-value=4.3e-16 Score=108.29 Aligned_cols=77 Identities=21% Similarity=0.285 Sum_probs=67.9
Q ss_pred CCCCcEEEEcCC--CCCCC--------HHHHHHHHccCCCceEEEEeeCC-------ccEEEEEeCCHHHHHHHHHHhCC
Q psy4057 168 QPPNQILFLTNL--PEETS--------EMMLSMLFNQFPGFKEVRLVPNR-------HDIAFVEFENEMQSAAAKLALHG 230 (246)
Q Consensus 168 ~~~~~~l~v~nL--~~~~t--------~e~l~~~f~~~G~i~~v~~~~~~-------~g~afV~f~~~~~A~~Al~~l~g 230 (246)
..|+++|+|.|+ |.++. +++|+++|++||.|.+|+++.++ +|+|||+|.+.++|.+|+..|||
T Consensus 2 g~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 2 GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp CSCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 358999999998 33443 36999999999999999998753 58999999999999999999999
Q ss_pred CccCCCCceEEEeec
Q psy4057 231 FKITPTHAMKISFAK 245 (246)
Q Consensus 231 ~~i~~g~~l~v~~ak 245 (246)
+.|+ |+.|+|+|+.
T Consensus 82 ~~f~-GR~i~v~~~~ 95 (105)
T 3v4m_A 82 RKFA-NRVVVTKYCD 95 (105)
T ss_dssp CEET-TEECEEEEEC
T ss_pred CEeC-CCEEEEEEeC
Confidence 9999 9999999973
No 352
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.65 E-value=5e-16 Score=120.16 Aligned_cols=81 Identities=15% Similarity=0.286 Sum_probs=75.4
Q ss_pred CCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC---CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEc
Q psy4057 9 CVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL---KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYS 85 (246)
Q Consensus 9 ~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a 85 (246)
.+.++|||+|||.++++++|+++|++||.|.+|.+.++. +++|||||+|.+.++|.+|++.|||..+.|++|+|.++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 577999999999999999999999999999999998753 67899999999999999999999999999999999998
Q ss_pred cCCc
Q psy4057 86 KTDS 89 (246)
Q Consensus 86 ~~~~ 89 (246)
.+..
T Consensus 192 ~~~~ 195 (198)
T 2yh0_A 192 SVGA 195 (198)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7653
No 353
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.65 E-value=8.6e-17 Score=117.30 Aligned_cols=74 Identities=15% Similarity=0.179 Sum_probs=67.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEee
Q psy4057 169 PPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFA 244 (246)
Q Consensus 169 ~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~a 244 (246)
...++|||+|||+++|+++|+++|++|| |.+|+++.++ +|||||+|.+.++|.+|+ .||+..|+ |+.|+|.++
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~-gR~i~V~~a 120 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQ-HRYIELFLN 120 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSS-SCCCCCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEEC-CEEEEEEEC
Confidence 3578999999999999999999999999 7799999865 589999999999999999 79999999 999999887
Q ss_pred c
Q psy4057 245 K 245 (246)
Q Consensus 245 k 245 (246)
.
T Consensus 121 ~ 121 (139)
T 2hgn_A 121 S 121 (139)
T ss_dssp C
T ss_pred C
Confidence 5
No 354
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.64 E-value=9.2e-16 Score=125.36 Aligned_cols=79 Identities=27% Similarity=0.465 Sum_probs=72.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHH----HHHccCCCceEEEEeeCC--ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceE
Q psy4057 167 EQPPNQILFLTNLPEETSEMMLS----MLFNQFPGFKEVRLVPNR--HDIAFVEFENEMQSAAAKLALHGFKITPTHAMK 240 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~~t~e~l~----~~f~~~G~i~~v~~~~~~--~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~ 240 (246)
...++++|||+|||.++|+++|+ ++|+.||.|.+|++.++. +|||||+|.+.++|..|+..|||..|. |+.|+
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~-g~~l~ 83 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFY-DKPMR 83 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeC-CcEEE
Confidence 45679999999999999999976 899999999999998744 589999999999999999999999999 99999
Q ss_pred EEeecC
Q psy4057 241 ISFAKK 246 (246)
Q Consensus 241 v~~ak~ 246 (246)
|.|++.
T Consensus 84 v~~a~~ 89 (282)
T 3pgw_A 84 IQYAKT 89 (282)
T ss_pred EEEecc
Confidence 999863
No 355
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.3e-15 Score=107.29 Aligned_cols=77 Identities=13% Similarity=0.169 Sum_probs=67.0
Q ss_pred CCCCCcEEEEcCCCCCCC-----------HHHHHHHHccCCCceEEEEeeCC--ccEEEEEeCCHHHHHHHHHHhCCCcc
Q psy4057 167 EQPPNQILFLTNLPEETS-----------EMMLSMLFNQFPGFKEVRLVPNR--HDIAFVEFENEMQSAAAKLALHGFKI 233 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~~t-----------~e~l~~~f~~~G~i~~v~~~~~~--~g~afV~f~~~~~A~~Al~~l~g~~i 233 (246)
...++++|+|+||..... +++|+++|++||.|.+|.+ .++ +|||||+|.+.++|.+|+..|||+.|
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~ 89 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDRHPDGVASVSFRDPEEADYCIQTLDGRWF 89 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETTCTTCEEEEECSCHHHHHHHHHHSTTCEE
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecCCCCEEEEEEECCHHHHHHHHHHcCCCEE
Confidence 445799999999944332 5899999999999999966 433 69999999999999999999999999
Q ss_pred CCCCceEEEeec
Q psy4057 234 TPTHAMKISFAK 245 (246)
Q Consensus 234 ~~g~~l~v~~ak 245 (246)
+ |++|+|.||+
T Consensus 90 ~-gr~l~v~~a~ 100 (112)
T 2dit_A 90 G-GRQITAQAWD 100 (112)
T ss_dssp T-TEECEEEECC
T ss_pred C-CcEEEEEEeC
Confidence 9 9999999985
No 356
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=2.9e-16 Score=112.17 Aligned_cols=75 Identities=17% Similarity=0.142 Sum_probs=67.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHccCCCc----eEEEEeeCC----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceE
Q psy4057 169 PPNQILFLTNLPEETSEMMLSMLFNQFPGF----KEVRLVPNR----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMK 240 (246)
Q Consensus 169 ~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i----~~v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~ 240 (246)
....+|||+|||+++|+++|+++|+.||.| ..|+++.+. +|||||+|.+.++|.+|+.. |+..++ |+.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~-gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLG-KRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESS-SCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeC-CeEEE
Confidence 357899999999999999999999999975 689988764 58999999999999999996 999998 99999
Q ss_pred EEeec
Q psy4057 241 ISFAK 245 (246)
Q Consensus 241 v~~ak 245 (246)
|..|.
T Consensus 99 V~~a~ 103 (123)
T 2dha_A 99 LFRST 103 (123)
T ss_dssp CEEEC
T ss_pred EEECC
Confidence 98774
No 357
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.63 E-value=7.7e-16 Score=118.92 Aligned_cols=81 Identities=20% Similarity=0.272 Sum_probs=71.4
Q ss_pred CCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccC---CCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEc
Q psy4057 9 CVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKT---LKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYS 85 (246)
Q Consensus 9 ~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~---~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a 85 (246)
.+.++|||+|||.++++++|+++|++||.|..|.++++ ++++|||||+|.+.++|.+|++. +|..+.|++|.|.++
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a 180 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKA 180 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEEC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEec
Confidence 45689999999999999999999999999999999876 36789999999999999999986 899999999999998
Q ss_pred cCCcc
Q psy4057 86 KTDSD 90 (246)
Q Consensus 86 ~~~~~ 90 (246)
.++..
T Consensus 181 ~~k~~ 185 (196)
T 1l3k_A 181 LSKQE 185 (196)
T ss_dssp C----
T ss_pred CChhH
Confidence 76643
No 358
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.63 E-value=5.3e-16 Score=119.76 Aligned_cols=76 Identities=20% Similarity=0.375 Sum_probs=69.2
Q ss_pred CcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC--CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEccC
Q psy4057 11 TNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL--KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKT 87 (246)
Q Consensus 11 ~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~--~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~~ 87 (246)
.++|||+|||.++++++|+++|++||.|.+|.+.++. +++|||||+|.+.++|.+|++.++ ..+.|++|.|.++..
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHH
Confidence 5899999999999999999999999999999998754 788999999999999999998654 599999999998643
No 359
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.63 E-value=3e-16 Score=110.60 Aligned_cols=75 Identities=16% Similarity=0.166 Sum_probs=67.3
Q ss_pred cEEEecCC----ChhhhHHHHHHHhhccCCeeEEEEccCC---CCccEEEEEEcC----HHH----HHHHHH--HhcCCc
Q psy4057 12 NFVYVTHI----SSTDLKKSLYAIFSQFGQIMDIVALKTL---KMRGQAFVIFKE----IAS----ATNALR--SMQGFP 74 (246)
Q Consensus 12 ~~l~V~nl----~~~~~e~~l~~~F~~fG~i~~v~~~~~~---~~kg~aFV~f~~----~~~----A~~Ai~--~lng~~ 74 (246)
..|||+|| |+.+++.+|+++|+.||+|.++.++.|+ +++|||||+|.+ +++ |.+|+. .+||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999876 779999999996 433 888988 789999
Q ss_pred cCCeeEEEEEcc
Q psy4057 75 FYDKPMRIQYSK 86 (246)
Q Consensus 75 ~~g~~l~v~~a~ 86 (246)
+.|++|+|.+-.
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999953
No 360
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.62 E-value=4.4e-15 Score=114.60 Aligned_cols=74 Identities=11% Similarity=0.139 Sum_probs=67.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEeec
Q psy4057 170 PNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR----HDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAK 245 (246)
Q Consensus 170 ~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~ak 245 (246)
..++|||+|||.++|+++|+++|++||.|..|+++.+. +|||||+|.+.++|..|+..++ ..++ |++|+|.+++
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~-Gr~l~V~~~~ 185 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYK-ETDLLILFKD 185 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEET-TEECEEEETT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeEC-CEEEEEEEhH
Confidence 36899999999999999999999999999999999854 5899999999999999998665 5899 9999999976
No 361
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.61 E-value=2.5e-15 Score=121.57 Aligned_cols=77 Identities=26% Similarity=0.427 Sum_probs=72.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCCccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEeec
Q psy4057 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAK 245 (246)
Q Consensus 167 ~~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~ak 245 (246)
....+++|||+|||.++|+++|+++|+.||.|..|++.+++ |||||+|.+.++|..|+..|||..+. |+.|+|.|++
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~k-g~afV~f~~~~~A~~A~~~l~g~~i~-g~~l~v~~a~ 94 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDR-GFGFIRLESRTLAEIAKAELDGTILK-SRPLRIRFAT 94 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETTT-TEEEEECSSHHHHHHHHHHHTTCEET-TEECEEEECC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCCC-cEEEEEECCHHHHHHHHHHcCCcEEC-CceeEeeecc
Confidence 44568899999999999999999999999999999998775 89999999999999999999999999 9999999985
No 362
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.60 E-value=2e-15 Score=106.86 Aligned_cols=76 Identities=17% Similarity=0.195 Sum_probs=67.2
Q ss_pred CCCcEEEEcCCCC--CC---CHHHHHHHHccCCCceEEEEeeCC---------ccEEEEEeCCHHHHHHHHHHhCCCccC
Q psy4057 169 PPNQILFLTNLPE--ET---SEMMLSMLFNQFPGFKEVRLVPNR---------HDIAFVEFENEMQSAAAKLALHGFKIT 234 (246)
Q Consensus 169 ~~~~~l~v~nL~~--~~---t~e~l~~~f~~~G~i~~v~~~~~~---------~g~afV~f~~~~~A~~Al~~l~g~~i~ 234 (246)
+++++|+|.|+-. ++ .+++|++.|++||.|.+|+++.++ +|+|||+|.+.++|.+|+..|||+.|+
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 3799999999842 33 368999999999999999999864 289999999999999999999999999
Q ss_pred CCCceEEEeec
Q psy4057 235 PTHAMKISFAK 245 (246)
Q Consensus 235 ~g~~l~v~~ak 245 (246)
|+.|+|.|+.
T Consensus 98 -GR~i~v~~~~ 107 (118)
T 3ue2_A 98 -GRKVVAEVYD 107 (118)
T ss_dssp -TEECEEEEEC
T ss_pred -CcEEEEEEcC
Confidence 9999999974
No 363
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.58 E-value=2.6e-15 Score=105.88 Aligned_cols=73 Identities=7% Similarity=0.135 Sum_probs=65.0
Q ss_pred cEEEEcCC----CCCCCHHHHHHHHccCCCceEEEEeeCC-----ccEEEEEeCC----H-HH---HHHHHH--HhCCCc
Q psy4057 172 QILFLTNL----PEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFEN----E-MQ---SAAAKL--ALHGFK 232 (246)
Q Consensus 172 ~~l~v~nL----~~~~t~e~l~~~f~~~G~i~~v~~~~~~-----~g~afV~f~~----~-~~---A~~Al~--~l~g~~ 232 (246)
+.|||+|| |+.+++++|+++|+.||.|.++.++.|+ +|||||+|.+ . ++ |.+|+. .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999988 6899999996 3 32 788888 789999
Q ss_pred cCCCCceEEEeec
Q psy4057 233 ITPTHAMKISFAK 245 (246)
Q Consensus 233 i~~g~~l~v~~ak 245 (246)
|+ |++|+|.+-+
T Consensus 83 I~-Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IM-GFKFEVILNK 94 (136)
T ss_dssp ET-TEEEEEEECC
T ss_pred ec-CcEEEEEECc
Confidence 99 9999998743
No 364
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.58 E-value=9.9e-15 Score=102.62 Aligned_cols=80 Identities=20% Similarity=0.299 Sum_probs=70.1
Q ss_pred CCCCCcEEEecCCC----------hhhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccC
Q psy4057 7 HICVTNFVYVTHIS----------STDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFY 76 (246)
Q Consensus 7 ~~~~~~~l~V~nl~----------~~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~ 76 (246)
...|+++|.+.||= ++..+++|++.|++||.|.+|.+.++ .++|+|||+|.+.++|.+|++.|||..|.
T Consensus 3 ~p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~-~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 3 QPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKN-SAQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTT-CTTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecC-CCcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 34578999997661 35678899999999999999999776 36899999999999999999999999999
Q ss_pred CeeEEEEEccC
Q psy4057 77 DKPMRIQYSKT 87 (246)
Q Consensus 77 g~~l~v~~a~~ 87 (246)
||.|+|.|+..
T Consensus 82 GR~i~v~~~~~ 92 (114)
T 3s6e_A 82 GKMITAAYVPL 92 (114)
T ss_dssp TEECEEEEECH
T ss_pred CEEEEEEEEcH
Confidence 99999999853
No 365
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.58 E-value=2.6e-15 Score=104.21 Aligned_cols=70 Identities=16% Similarity=0.335 Sum_probs=61.1
Q ss_pred ecCCChhhhHHHHHHHh------------hccCCeeEEEEccCC--CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEE
Q psy4057 16 VTHISSTDLKKSLYAIF------------SQFGQIMDIVALKTL--KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMR 81 (246)
Q Consensus 16 V~nl~~~~~e~~l~~~F------------~~fG~i~~v~~~~~~--~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~ 81 (246)
+.+|+..+++++|++.| ++||.|.+|.++++. +++|||||+|.+.++|.+|++.|||..+.||+|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 45666677777666666 999999999999764 6799999999999999999999999999999999
Q ss_pred EEEc
Q psy4057 82 IQYS 85 (246)
Q Consensus 82 v~~a 85 (246)
|.++
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9986
No 366
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=4.8e-15 Score=104.70 Aligned_cols=63 Identities=22% Similarity=0.290 Sum_probs=56.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC--------ccEEEEEeCCHHHHHHHHHHh---CCC
Q psy4057 168 QPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR--------HDIAFVEFENEMQSAAAKLAL---HGF 231 (246)
Q Consensus 168 ~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~--------~g~afV~f~~~~~A~~Al~~l---~g~ 231 (246)
...+++|||+|||.++|+++|+++|++||.|. +.++.++ +|||||+|.+.++|.+|++.| ||+
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~ 78 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGK 78 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCc
Confidence 34689999999999999999999999999999 7777642 589999999999999999999 555
No 367
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.58 E-value=1.1e-14 Score=102.42 Aligned_cols=76 Identities=17% Similarity=0.145 Sum_probs=66.6
Q ss_pred CCCcEEEEcCCCCCC----------CHHHHHHHHccCCCceEEEEeeCC-ccEEEEEeCCHHHHHHHHHHhCCCccCCCC
Q psy4057 169 PPNQILFLTNLPEET----------SEMMLSMLFNQFPGFKEVRLVPNR-HDIAFVEFENEMQSAAAKLALHGFKITPTH 237 (246)
Q Consensus 169 ~~~~~l~v~nL~~~~----------t~e~l~~~f~~~G~i~~v~~~~~~-~g~afV~f~~~~~A~~Al~~l~g~~i~~g~ 237 (246)
.++++|.+.|+-..- .+++|++.|++||.|.+|.+.++. +|+|||+|.+.++|.+|++.|||+.|+ |+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~-GR 83 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFA-GK 83 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEET-TE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEEC-CE
Confidence 378999999974321 135899999999999999998865 699999999999999999999999999 99
Q ss_pred ceEEEeec
Q psy4057 238 AMKISFAK 245 (246)
Q Consensus 238 ~l~v~~ak 245 (246)
.|+|.|+.
T Consensus 84 ~i~v~~~~ 91 (114)
T 3s6e_A 84 MITAAYVP 91 (114)
T ss_dssp ECEEEEEC
T ss_pred EEEEEEEc
Confidence 99999974
No 368
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.56 E-value=8.8e-15 Score=121.63 Aligned_cols=78 Identities=9% Similarity=0.224 Sum_probs=69.2
Q ss_pred cCCCCCcEEEecC--CChhhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCcc---CCe--
Q psy4057 6 AHICVTNFVYVTH--ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPF---YDK-- 78 (246)
Q Consensus 6 ~~~~~~~~l~V~n--l~~~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~---~g~-- 78 (246)
...+|+++|||+| |+..+++++|+++|++||+|.+|.+.+ +||||||+|.+.++|++|++.|||..+ .|+
T Consensus 13 ~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~---~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~ 89 (345)
T 3tht_A 13 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP---NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 89 (345)
T ss_dssp CCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT---TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred ecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCccccccCCce
Confidence 3578899999988 689999999999999999999998754 789999999999999999999999887 355
Q ss_pred eEEEEEcc
Q psy4057 79 PMRIQYSK 86 (246)
Q Consensus 79 ~l~v~~a~ 86 (246)
+|.+.|+.
T Consensus 90 ~ly~~~~~ 97 (345)
T 3tht_A 90 TLYLNFVE 97 (345)
T ss_dssp ECEEEECS
T ss_pred EEEEEEee
Confidence 68888874
No 369
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.56 E-value=7.8e-15 Score=121.94 Aligned_cols=79 Identities=19% Similarity=0.276 Sum_probs=69.3
Q ss_pred CCCCCcEEEEcC--CCCCCCHHHHHHHHccCCCceEEEEeeCCccEEEEEeCCHHHHHHHHHHhCCCccC--CCC--ceE
Q psy4057 167 EQPPNQILFLTN--LPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKIT--PTH--AMK 240 (246)
Q Consensus 167 ~~~~~~~l~v~n--L~~~~t~e~l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~--~g~--~l~ 240 (246)
..+|+.+|||+| |+.++|+++|+++|++||.|.+|.+.++ +|||||+|.+.++|++|++.|||+.+. .|+ +|.
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~-kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly 92 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN-KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY 92 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTT-CSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEE
Confidence 466899999999 5789999999999999999999998875 499999999999999999999999883 144 688
Q ss_pred EEeecC
Q psy4057 241 ISFAKK 246 (246)
Q Consensus 241 v~~ak~ 246 (246)
|.|+++
T Consensus 93 ~~~~~~ 98 (345)
T 3tht_A 93 LNFVEK 98 (345)
T ss_dssp EEECSS
T ss_pred EEEeec
Confidence 898753
No 370
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=3.7e-14 Score=97.32 Aligned_cols=75 Identities=20% Similarity=0.175 Sum_probs=64.0
Q ss_pred CCCcEEEEcCCC-------CCCCHHHHHHHHccCCCceEEEEeeCCccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEE
Q psy4057 169 PPNQILFLTNLP-------EETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKI 241 (246)
Q Consensus 169 ~~~~~l~v~nL~-------~~~t~e~l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v 241 (246)
....+|.|.-.. .++++++|+++|++||.|.+|+++...+|||||+|.+.++|..|++.+++ +. |++|+|
T Consensus 8 ~~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~-g~~l~V 84 (100)
T 2d9o_A 8 QGTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVG--LV-DNPLKI 84 (100)
T ss_dssp CSSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCB--CS-SSBCEE
T ss_pred CccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCC--CC-CCeEEE
Confidence 346677776543 46899999999999999999999977789999999999999999998665 56 899999
Q ss_pred EeecC
Q psy4057 242 SFAKK 246 (246)
Q Consensus 242 ~~ak~ 246 (246)
.||+.
T Consensus 85 ~~a~~ 89 (100)
T 2d9o_A 85 SWLEG 89 (100)
T ss_dssp ECSSC
T ss_pred EEccC
Confidence 99873
No 371
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.53 E-value=4e-15 Score=103.23 Aligned_cols=68 Identities=13% Similarity=0.254 Sum_probs=58.3
Q ss_pred EcCCCCCCCHHHHHHHH------------ccCCCceEEEEeeCC----ccEEEEEeCCHHHHHHHHHHhCCCccCCCCce
Q psy4057 176 LTNLPEETSEMMLSMLF------------NQFPGFKEVRLVPNR----HDIAFVEFENEMQSAAAKLALHGFKITPTHAM 239 (246)
Q Consensus 176 v~nL~~~~t~e~l~~~f------------~~~G~i~~v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l 239 (246)
+.|||..+++++|++.| ++||.|.+|+++.+. +|||||+|.+.++|.+|+..|||+.++ |++|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~-Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFN-GQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEET-TEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEEC-CEEE
Confidence 34455556666666555 999999999999875 699999999999999999999999999 9999
Q ss_pred EEEee
Q psy4057 240 KISFA 244 (246)
Q Consensus 240 ~v~~a 244 (246)
+|.|+
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99997
No 372
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=4.8e-14 Score=96.74 Aligned_cols=75 Identities=21% Similarity=0.372 Sum_probs=63.1
Q ss_pred CcEEEecCC-------ChhhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEE
Q psy4057 11 TNFVYVTHI-------SSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83 (246)
Q Consensus 11 ~~~l~V~nl-------~~~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~ 83 (246)
.++|-|.-. +.++++++|+++|++||.|.+|.++ ++++|||||+|.+.++|..|++.+++ +.|++|+|.
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~--~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~ 85 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS--SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKIS 85 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE--SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEE
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc--cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEE
Confidence 456666322 3568999999999999999999997 37899999999999999999998554 679999999
Q ss_pred EccCCc
Q psy4057 84 YSKTDS 89 (246)
Q Consensus 84 ~a~~~~ 89 (246)
++....
T Consensus 86 ~a~~~~ 91 (100)
T 2d9o_A 86 WLEGQP 91 (100)
T ss_dssp CSSCCC
T ss_pred EccCCC
Confidence 987654
No 373
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=3.3e-13 Score=89.17 Aligned_cols=74 Identities=14% Similarity=0.212 Sum_probs=65.3
Q ss_pred CCCCCcEEEEcCCC----CCCCH----HHHHHHHccCCCceEEEEeeCCccEEEEEeCCHHHHHHHHHHhCCCccCCCCc
Q psy4057 167 EQPPNQILFLTNLP----EETSE----MMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHA 238 (246)
Q Consensus 167 ~~~~~~~l~v~nL~----~~~t~----e~l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~ 238 (246)
..||.-+|+|.-.+ .++-+ .+|.+.|++||.|..++++.++ +||+|.+.++|.+|++ |||..++ |+.
T Consensus 3 ~GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~---~fVtF~d~~sAlaAi~-mnG~~v~-Gr~ 77 (91)
T 2dnr_A 3 SGSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK---MWVTFLEGSSALNVLS-LNGKELL-NRT 77 (91)
T ss_dssp CCCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS---EEEEESSHHHHHHGGG-GTTCEET-TEE
T ss_pred CCCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC---EEEEECChHHHHHHHh-cCCeEeC-CeE
Confidence 56788899998765 23444 5899999999999999999987 9999999999999999 9999999 999
Q ss_pred eEEEeec
Q psy4057 239 MKISFAK 245 (246)
Q Consensus 239 l~v~~ak 245 (246)
|+|.+++
T Consensus 78 LkV~lkt 84 (91)
T 2dnr_A 78 ITIALKS 84 (91)
T ss_dssp EEEEECC
T ss_pred EEEEeCC
Confidence 9999986
No 374
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=1.6e-12 Score=85.94 Aligned_cols=76 Identities=24% Similarity=0.309 Sum_probs=65.1
Q ss_pred CCCCCcEEEecCCC--------hhhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccCCe
Q psy4057 7 HICVTNFVYVTHIS--------STDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78 (246)
Q Consensus 7 ~~~~~~~l~V~nl~--------~~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~ 78 (246)
..||..||+|.-.+ ++....+|.+.|++||.|..+++..+. +||+|.+.++|.+|++ |||..+.||
T Consensus 3 ~GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~-----~fVtF~d~~sAlaAi~-mnG~~v~Gr 76 (91)
T 2dnr_A 3 SGSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK-----MWVTFLEGSSALNVLS-LNGKELLNR 76 (91)
T ss_dssp CCCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS-----EEEEESSHHHHHHGGG-GTTCEETTE
T ss_pred CCCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC-----EEEEECChHHHHHHHh-cCCeEeCCe
Confidence 36899999994433 344557899999999999999997753 9999999999999999 999999999
Q ss_pred eEEEEEccCC
Q psy4057 79 PMRIQYSKTD 88 (246)
Q Consensus 79 ~l~v~~a~~~ 88 (246)
.|+|.++.++
T Consensus 77 ~LkV~lkt~d 86 (91)
T 2dnr_A 77 TITIALKSPS 86 (91)
T ss_dssp EEEEEECCCS
T ss_pred EEEEEeCCCC
Confidence 9999997543
No 375
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=4.1e-12 Score=89.41 Aligned_cols=78 Identities=13% Similarity=0.196 Sum_probs=70.0
Q ss_pred CCCCCCCCcEEEEcCCCCC-CCHHHHHHHHccCCCceEEEEeeCCccEEEEEeCC-HHHHHHHHHHhC--CCccCCCCce
Q psy4057 164 GVPEQPPNQILFLTNLPEE-TSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFEN-EMQSAAAKLALH--GFKITPTHAM 239 (246)
Q Consensus 164 ~~~~~~~~~~l~v~nL~~~-~t~e~l~~~f~~~G~i~~v~~~~~~~g~afV~f~~-~~~A~~Al~~l~--g~~i~~g~~l 239 (246)
..-..+++++|+|+||+.+ ++.++|+++|+.||.|..|.+..++. .|||.|.+ .++|..|+..|| |..|. |..+
T Consensus 11 ~~~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~-tgfVrf~~~~~~A~~av~~ln~~~~~i~-g~~~ 88 (121)
T 1owx_A 11 GSLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK-EGIILFKEKAKEALGKAKDANNGNLQLR-NKEV 88 (121)
T ss_dssp CCCSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS-EEEEEESSCHHHHHHHHHHTTTSCBCTT-SSSE
T ss_pred CcccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC-EEEEEECCChHHHHHHHHHhhcCCcEEe-CcEE
Confidence 3446778999999999999 99999999999999999999999985 79999999 899999999994 78888 7888
Q ss_pred EEEe
Q psy4057 240 KISF 243 (246)
Q Consensus 240 ~v~~ 243 (246)
++..
T Consensus 89 ~~ev 92 (121)
T 1owx_A 89 TWEV 92 (121)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8764
No 376
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=3.4e-12 Score=84.71 Aligned_cols=73 Identities=16% Similarity=0.192 Sum_probs=64.6
Q ss_pred CCCCCCcEEEEcCCCCC-----CCH----HHHHHHHccCCCceEEEEeeCCccEEEEEeCCHHHHHHHHHHhCCCccCCC
Q psy4057 166 PEQPPNQILFLTNLPEE-----TSE----MMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPT 236 (246)
Q Consensus 166 ~~~~~~~~l~v~nL~~~-----~t~----e~l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~~g 236 (246)
...||.-+++|.-++.+ +.+ .+|.+.|++||.|..++++.++ +||+|.+.++|.+|++ |||..++ |
T Consensus 10 ~~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~---~fVtF~d~~sAl~AI~-ldG~~v~-G 84 (95)
T 1ufw_A 10 FQGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ---MLVTFADSHSALSVLD-VDGMKVK-G 84 (95)
T ss_dssp CCCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE---EEEECSCSHHHHHHHH-GGGSEET-T
T ss_pred ecCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc---EEEEEcChHHHHHHHh-cCCeeeC-C
Confidence 46789999999977632 333 5789999999999999999997 9999999999999998 9999999 9
Q ss_pred CceEEEe
Q psy4057 237 HAMKISF 243 (246)
Q Consensus 237 ~~l~v~~ 243 (246)
+.|+|.+
T Consensus 85 r~L~V~~ 91 (95)
T 1ufw_A 85 RAVKISG 91 (95)
T ss_dssp EEEEEEC
T ss_pred eEEEEec
Confidence 9999986
No 377
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.26 E-value=2.1e-11 Score=85.79 Aligned_cols=77 Identities=16% Similarity=0.217 Sum_probs=69.1
Q ss_pred CCCCCcEEEecCCChh-hhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcC-HHHHHHHHHHhc--CCccCCeeEEE
Q psy4057 7 HICVTNFVYVTHISST-DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKE-IASATNALRSMQ--GFPFYDKPMRI 82 (246)
Q Consensus 7 ~~~~~~~l~V~nl~~~-~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~-~~~A~~Ai~~ln--g~~~~g~~l~v 82 (246)
..+++..|||+||+.+ +++++|+++|++||+|..|.+.++.. .|||.|.+ ..+|..|++.+| +..+.|..+++
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~---tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ 90 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK---EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTW 90 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS---EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEE
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC---EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEE
Confidence 5688999999999999 99999999999999999999877544 59999999 899999999995 68899999888
Q ss_pred EEcc
Q psy4057 83 QYSK 86 (246)
Q Consensus 83 ~~a~ 86 (246)
....
T Consensus 91 evL~ 94 (121)
T 1owx_A 91 EVLE 94 (121)
T ss_dssp EECC
T ss_pred EECC
Confidence 8753
No 378
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.26 E-value=1.2e-11 Score=82.04 Aligned_cols=72 Identities=21% Similarity=0.275 Sum_probs=62.7
Q ss_pred CCCCCcEEEecCCC---------hhhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccCC
Q psy4057 7 HICVTNFVYVTHIS---------STDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYD 77 (246)
Q Consensus 7 ~~~~~~~l~V~nl~---------~~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g 77 (246)
..||..||+|.-++ ++....+|.+.|++||.|..+++..+. +||+|.+.++|.+|++ |||..+.|
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~-----~fVtF~d~~sAl~AI~-ldG~~v~G 84 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ-----MLVTFADSHSALSVLD-VDGMKVKG 84 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE-----EEEECSCSHHHHHHHH-GGGSEETT
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc-----EEEEEcChHHHHHHHh-cCCeeeCC
Confidence 46899999997654 222346799999999999999998764 9999999999999999 99999999
Q ss_pred eeEEEEE
Q psy4057 78 KPMRIQY 84 (246)
Q Consensus 78 ~~l~v~~ 84 (246)
|.|+|.+
T Consensus 85 r~L~V~~ 91 (95)
T 1ufw_A 85 RAVKISG 91 (95)
T ss_dssp EEEEEEC
T ss_pred eEEEEec
Confidence 9999987
No 379
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.05 E-value=7.7e-10 Score=86.99 Aligned_cols=74 Identities=18% Similarity=0.202 Sum_probs=62.2
Q ss_pred CCcEEEEcCCCC-----CCCHHHHHHHHccCCCceEEEEeeCC---------ccEEEEEeCCHHHHHHHHHHhCCCccCC
Q psy4057 170 PNQILFLTNLPE-----ETSEMMLSMLFNQFPGFKEVRLVPNR---------HDIAFVEFENEMQSAAAKLALHGFKITP 235 (246)
Q Consensus 170 ~~~~l~v~nL~~-----~~t~e~l~~~f~~~G~i~~v~~~~~~---------~g~afV~f~~~~~A~~Al~~l~g~~i~~ 235 (246)
.+.++.+.|+.. +-.+++|+..|++||.|.++.+..+. +|++||+|.+.++|.+|++.|||+.+.
T Consensus 123 ~s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~- 201 (222)
T 3dxb_A 123 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA- 201 (222)
T ss_dssp BCSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSS-
T ss_pred ccccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceEC-
Confidence 456666666522 33567999999999999999998531 489999999999999999999999999
Q ss_pred CCceEEEee
Q psy4057 236 THAMKISFA 244 (246)
Q Consensus 236 g~~l~v~~a 244 (246)
|+.|++.|+
T Consensus 202 gr~i~~~~~ 210 (222)
T 3dxb_A 202 GRKVVAEVY 210 (222)
T ss_dssp SSBCEEEEC
T ss_pred CeEEEEEEc
Confidence 999999996
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.05 E-value=5.6e-10 Score=87.78 Aligned_cols=66 Identities=15% Similarity=0.272 Sum_probs=59.6
Q ss_pred hhhhHHHHHHHhhccCCeeEEEEccCC-------CCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEcc
Q psy4057 21 STDLKKSLYAIFSQFGQIMDIVALKTL-------KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSK 86 (246)
Q Consensus 21 ~~~~e~~l~~~F~~fG~i~~v~~~~~~-------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~ 86 (246)
.+..+++|++.|++||.|.++.++++. +++|++||+|.+.++|.+|+..|||..+.||+|.+.|+.
T Consensus 139 ~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 139 DDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp CTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 456778999999999999999998532 678999999999999999999999999999999999974
No 381
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.93 E-value=6.5e-09 Score=70.34 Aligned_cols=71 Identities=14% Similarity=0.285 Sum_probs=67.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHccC-----CCceEEEEeeCCccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEE
Q psy4057 170 PNQILFLTNLPEETSEMMLSMLFNQF-----PGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKIS 242 (246)
Q Consensus 170 ~~~~l~v~nL~~~~t~e~l~~~f~~~-----G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~ 242 (246)
..++|-+-|||..+++..|+.+.+.+ |.++.|.+.++-.| |+|+|.+...|.+|.-.|+|.+|. |++|++.
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~G-Aivef~d~~~AgKasLaL~G~ef~-gr~Lr~g 95 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNG-AIIIFRDSKFAAKMLMILNGSQFQ-GKVIRSG 95 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTE-EEEECSCHHHHHHHHHHHSSEEET-TEEEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCc-eEEEEccchhhHHHHhhcCCeeec-CeEEEec
Confidence 47889999999999999999999999 99999999999866 999999999999999999999999 9999986
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.76 E-value=2e-08 Score=67.95 Aligned_cols=81 Identities=19% Similarity=0.252 Sum_probs=71.4
Q ss_pred cccccCCCC---CcEEEecCCChhhhHHHHHHHhhcc-----CCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCC
Q psy4057 2 NIILAHICV---TNFVYVTHISSTDLKKSLYAIFSQF-----GQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGF 73 (246)
Q Consensus 2 ~~~~~~~~~---~~~l~V~nl~~~~~e~~l~~~F~~f-----G~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~ 73 (246)
+++|++-.+ .++|-+-+||..++...++.+..++ |.|..|.+..|. .| |+|+|.+...|-+|.=.|+|.
T Consensus 9 k~il~s~~~~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH--~G-Aivef~d~~~AgKasLaL~G~ 85 (117)
T 2l9w_A 9 KRLLASRNSKELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF--NG-AIIIFRDSKFAAKMLMILNGS 85 (117)
T ss_dssp HHHHHCCCTTTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT--TE-EEEECSCHHHHHHHHHHHSSE
T ss_pred HHHHhccCCccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC--Cc-eEEEEccchhhHHHHhhcCCe
Confidence 345666655 7899999999999999999999999 999999997763 33 999999999999999889999
Q ss_pred ccCCeeEEEEEc
Q psy4057 74 PFYDKPMRIQYS 85 (246)
Q Consensus 74 ~~~g~~l~v~~a 85 (246)
.|.|++|+|.-.
T Consensus 86 ef~gr~Lr~gTv 97 (117)
T 2l9w_A 86 QFQGKVIRSGTI 97 (117)
T ss_dssp EETTEEEEEECH
T ss_pred eecCeEEEecCH
Confidence 999999999865
No 383
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.46 E-value=3.2e-07 Score=61.89 Aligned_cols=73 Identities=21% Similarity=0.284 Sum_probs=63.2
Q ss_pred CcEEEEcCCCCCC-C----HHHHHHHHccCCCceEEEEeeCCccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEeec
Q psy4057 171 NQILFLTNLPEET-S----EMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAK 245 (246)
Q Consensus 171 ~~~l~v~nL~~~~-t----~e~l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~ak 245 (246)
..+|+++||+.++ + .+.++++|..|+++....+.+.=+ -..|.|.+.++|.+|...|||+.|. |+.|+|.||.
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR-Rirv~F~~~~~A~~AR~~Lh~~~f~-g~~~r~YFgq 82 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK-RVRINFSNPLSAADARLRLHKTEFL-GKEMKLYFAQ 82 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT-EEEEECSSTTHHHHHHHTSTTSEET-TEECEEECCC
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce-EEEEEeCChHHHHHHHHHhccceec-CceeEEEecC
Confidence 5679999998866 2 257899999999998888777653 3899999999999999999999999 9999999974
No 384
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.33 E-value=5.3e-06 Score=55.68 Aligned_cols=71 Identities=15% Similarity=0.143 Sum_probs=60.0
Q ss_pred CCCcEEEecCCChhhhHHHHHHHhhcc-----CCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEE
Q psy4057 9 CVTNFVYVTHISSTDLKKSLYAIFSQF-----GQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83 (246)
Q Consensus 9 ~~~~~l~V~nl~~~~~e~~l~~~F~~f-----G~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~ 83 (246)
...++|.|.|||.++.++.|.-+|+.- |+|+++.... +-|+|+|.+.+.|++.+. -....|.|.+|.|.
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-----~~AvItF~d~~va~rVL~-k~~H~L~~~~LsV~ 79 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-----CGGVLTFREPADAERVLA-QADHELHGAQLSLR 79 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-----TEEEEEESSHHHHHHHHT-CSCCBSSSSBCEEE
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-----CcEEEEEcChHHHHHHhc-CCcceecCeEEEEE
Confidence 456899999999999999999999872 6899886633 779999999999999988 33578888999998
Q ss_pred Ec
Q psy4057 84 YS 85 (246)
Q Consensus 84 ~a 85 (246)
..
T Consensus 80 P~ 81 (104)
T 2dhx_A 80 PA 81 (104)
T ss_dssp EC
T ss_pred cC
Confidence 74
No 385
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.30 E-value=2.3e-06 Score=57.69 Aligned_cols=72 Identities=14% Similarity=0.242 Sum_probs=63.3
Q ss_pred cEEEecCCChhhh-----HHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEcc
Q psy4057 12 NFVYVTHISSTDL-----KKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSK 86 (246)
Q Consensus 12 ~~l~V~nl~~~~~-----e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~ 86 (246)
++|+|.||+.++- .+.++++|..|+++.....+++.+ -..|.|.++++|.+|-..|++..+.|+.|+|-++.
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR---Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq 82 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK---RVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQ 82 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT---EEEEECSSTTHHHHHHHTSTTSEETTEECEEECCC
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce---EEEEEeCChHHHHHHHHHhccceecCceeEEEecC
Confidence 6899999988763 367899999999999987777543 47999999999999999999999999999999986
No 386
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=98.01 E-value=4.2e-05 Score=50.64 Aligned_cols=63 Identities=14% Similarity=0.271 Sum_probs=57.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-------ccEEEEEeCCHHHHHHHHHHhCCCccC
Q psy4057 172 QILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-------HDIAFVEFENEMQSAAAKLALHGFKIT 234 (246)
Q Consensus 172 ~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-------~g~afV~f~~~~~A~~Al~~l~g~~i~ 234 (246)
+.|.|++||+.+|++++.+.++..+.+....++++. ..-|+|.|.+.+++..-.+.++|+.|.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 468999999999999999999999999888888866 246999999999999999999999885
No 387
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.99 E-value=3.5e-05 Score=51.10 Aligned_cols=58 Identities=21% Similarity=0.297 Sum_probs=49.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCCccEEEEEeCCHHHHHHHHHHhC
Q psy4057 168 QPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALH 229 (246)
Q Consensus 168 ~~~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~ 229 (246)
....++++| ++|.++...||.++|+.||. ..|+.+.|- .|||.|.+++.|..|+..+.
T Consensus 13 p~r~HVf~l-~FP~ewKt~DI~~lFs~fgg-v~I~WidDT--sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 13 PKRDHVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT--SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCCSEEEE-ECCTTCCHHHHHHHHTTTCS-CCCEEEETT--EEEEECSCHHHHHHHHHHHH
T ss_pred CCCCeEEEE-eCChhhhhHHHHHHhhccCC-EEEEEEcCC--eEEEEecCHHHHHHHHHhcc
Confidence 335778888 99999999999999999995 557777775 59999999999999999774
No 388
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.81 E-value=3.6e-05 Score=51.19 Aligned_cols=56 Identities=21% Similarity=0.298 Sum_probs=49.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCCccEEEEEeCCHHHHHHHHHHhC
Q psy4057 170 PNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALH 229 (246)
Q Consensus 170 ~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~ 229 (246)
..++++| ++|.++...||.++|+.|| -..|+.+.|- .|||.|.+++.|..|+..+.
T Consensus 5 R~HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT--sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 5 SDHVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT--SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT--EEEEEEEEECHHHHHHHHHT
T ss_pred CCeEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC--eEEEEecCHHHHHHHHHhcc
Confidence 3567788 9999999999999999999 4678888885 59999999999999999875
No 389
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.66 E-value=0.0008 Score=45.13 Aligned_cols=69 Identities=7% Similarity=0.106 Sum_probs=55.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHcc-----CCCceEEEEeeCCccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEE
Q psy4057 169 PPNQILFLTNLPEETSEMMLSMLFNQ-----FPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKIS 242 (246)
Q Consensus 169 ~~~~~l~v~nL~~~~t~e~l~~~f~~-----~G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~ 242 (246)
...++|.|.|||..+.++.|.-.|+. -|.|.++.... +-|+|+|.+...|++.|.. .-+.++ +.+|.|.
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~---~~AvItF~d~~va~rVL~k-~~H~L~-~~~LsV~ 79 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG---CGGVLTFREPADAERVLAQ-ADHELH-GAQLSLR 79 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET---TEEEEEESSHHHHHHHHTC-SCCBSS-SSBCEEE
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC---CcEEEEEcChHHHHHHhcC-Ccceec-CeEEEEE
Confidence 35789999999999999999999976 36778887776 3599999999999998763 245566 6777664
No 390
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.48 E-value=0.00055 Score=47.39 Aligned_cols=69 Identities=9% Similarity=0.190 Sum_probs=54.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCCccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEE
Q psy4057 170 PNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKI 241 (246)
Q Consensus 170 ~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v 241 (246)
..+-|.|-++|... -..+.+.|++||.|.+..... ...+-.|.|.+..+|++||. .||..|.++.-|=|
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~-~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV 91 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN-TGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGV 91 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS-SSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEE
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC-CCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEE
Confidence 47788888898875 566788899999999888743 34799999999999999988 59999883333333
No 391
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.44 E-value=0.00045 Score=45.76 Aligned_cols=55 Identities=24% Similarity=0.346 Sum_probs=44.9
Q ss_pred CcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhc
Q psy4057 11 TNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQ 71 (246)
Q Consensus 11 ~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~ln 71 (246)
.+.++| +.|.++...||..+|++||.|. |..+. ...|||.|.+++.|..|+..+.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~Wid----DTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWID----DTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEE----TTEEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCEE-EEEEc----CCeEEEEecCHHHHHHHHHhcc
Confidence 456667 9999999999999999999543 33333 3679999999999999998653
No 392
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.42 E-value=0.0011 Score=45.89 Aligned_cols=69 Identities=17% Similarity=0.247 Sum_probs=56.3
Q ss_pred CcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccCCee-EEEEE
Q psy4057 11 TNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKP-MRIQY 84 (246)
Q Consensus 11 ~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~-l~v~~ 84 (246)
.+.|-|.+.|... -..+...|++||.|.+... ....++-.|.|.+..+|++|+. .||..+.|.. |=|.+
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~---~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM---SNTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKP 93 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE---CSSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEE
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc---CCCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEE
Confidence 5678888999886 4578889999999999865 3466999999999999999999 6999887644 34554
No 393
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.33 E-value=0.00093 Score=44.14 Aligned_cols=65 Identities=15% Similarity=0.169 Sum_probs=54.0
Q ss_pred cEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC-----CCccEEEEEEcCHHHHHHHHHHhcCCccC
Q psy4057 12 NFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL-----KMRGQAFVIFKEIASATNALRSMQGFPFY 76 (246)
Q Consensus 12 ~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~-----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~ 76 (246)
.+|-|++||+.++|+++.+.++....+.-....... ..-..|+|.|.+.+++....+.++|..|.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 468899999999999999999999877665554432 22267999999999999999999998884
No 394
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.24 E-value=0.00037 Score=46.40 Aligned_cols=75 Identities=13% Similarity=0.261 Sum_probs=58.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCC-------ccEEEEEeCCHHHHHHHHHHhCCCccCCC----Cc
Q psy4057 170 PNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-------HDIAFVEFENEMQSAAAKLALHGFKITPT----HA 238 (246)
Q Consensus 170 ~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~-------~g~afV~f~~~~~A~~Al~~l~g~~i~~g----~~ 238 (246)
.+..|.|+.||+.+|++++.+.++..-.+....++++. ..-|+|.|.+.++...-.+..+|+.|.+. .+
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 36779999999999999999888877666666666654 13599999999999999999999887422 33
Q ss_pred eEEEee
Q psy4057 239 MKISFA 244 (246)
Q Consensus 239 l~v~~a 244 (246)
-.|+||
T Consensus 88 a~VE~A 93 (97)
T 2l08_A 88 AVVEFA 93 (97)
T ss_dssp EEEEEC
T ss_pred eEEEec
Confidence 446665
No 395
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.11 E-value=0.00068 Score=45.05 Aligned_cols=55 Identities=22% Similarity=0.350 Sum_probs=45.5
Q ss_pred CcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhc
Q psy4057 11 TNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQ 71 (246)
Q Consensus 11 ~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~ln 71 (246)
.+.++| +.|.++...||..+|++||. ..|..+.| ..|||.|.+++.|..|+..+.
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidD----TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDD----TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEET----TEEEEEEEEECHHHHHHHHHT
T ss_pred CeEEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcC----CeEEEEecCHHHHHHHHHhcc
Confidence 456777 99999999999999999993 44444443 679999999999999999764
No 396
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.84 E-value=0.00052 Score=59.01 Aligned_cols=57 Identities=18% Similarity=0.128 Sum_probs=43.8
Q ss_pred CCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHH
Q psy4057 9 CVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALR 68 (246)
Q Consensus 9 ~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~ 68 (246)
+..++|+|. .+.+.++.+|.++|++||+|.++.+.++ ..-||.|+|.+.+++..++.
T Consensus 51 qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~--~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 51 QAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYES--FGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECS--SSEEEEEECC---CCHHHHS
T ss_pred HhcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEcc--CCeEEEEEeCCHHHHHHHHh
Confidence 345899997 7999999999999999999999988764 34799999999999998765
No 397
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.76 E-value=0.00078 Score=57.95 Aligned_cols=56 Identities=18% Similarity=0.173 Sum_probs=43.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCCccEEEEEeCCHHHHHHHHH
Q psy4057 170 PNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKL 226 (246)
Q Consensus 170 ~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~ 226 (246)
..+.|+|. .|...++.+|.+.|++||.|.++.+-.+..-||+|+|.+.++++.++.
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHh
Confidence 36789997 789999999999999999999999998876799999999998886643
No 398
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.53 E-value=0.0087 Score=41.99 Aligned_cols=73 Identities=21% Similarity=0.210 Sum_probs=54.1
Q ss_pred CcEEEecCCChhhhHHHHHHHhhccCCeeEEE-EccC-----------C-----CCccEEEEEEcCHHHHHHHHHHhcCC
Q psy4057 11 TNFVYVTHISSTDLKKSLYAIFSQFGQIMDIV-ALKT-----------L-----KMRGQAFVIFKEIASATNALRSMQGF 73 (246)
Q Consensus 11 ~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~-~~~~-----------~-----~~kg~aFV~f~~~~~A~~Ai~~lng~ 73 (246)
...|.|-+-|++... .+.+.|++||.|.+-. ..++ . ...++-.|+|.+..+|++|+. .||.
T Consensus 7 e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 456777888766554 7778999999987722 1110 0 135788999999999999999 7999
Q ss_pred ccCCeeEEEEEc
Q psy4057 74 PFYDKPMRIQYS 85 (246)
Q Consensus 74 ~~~g~~l~v~~a 85 (246)
.+.|.-|=|.+.
T Consensus 85 ii~G~mIGV~Py 96 (132)
T 3p3d_A 85 VFNGVLLGVIPY 96 (132)
T ss_dssp EETTEECEEEEC
T ss_pred EeCcEEEEEEEC
Confidence 999986667664
No 399
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.00 E-value=0.0054 Score=43.04 Aligned_cols=69 Identities=13% Similarity=0.246 Sum_probs=48.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHccCCCceE-EEEee------------------CCccEEEEEeCCHHHHHHHHHHhCCC
Q psy4057 171 NQILFLTNLPEETSEMMLSMLFNQFPGFKE-VRLVP------------------NRHDIAFVEFENEMQSAAAKLALHGF 231 (246)
Q Consensus 171 ~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~-v~~~~------------------~~~g~afV~f~~~~~A~~Al~~l~g~ 231 (246)
..-|.|-+.|.+.+. .+-+.|++||.|.+ +...+ ...+|.-|.|.+..+|.+||+ .||.
T Consensus 7 e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 455677778876555 46677899999955 22211 013589999999999999987 7999
Q ss_pred ccCCCCceEEE
Q psy4057 232 KITPTHAMKIS 242 (246)
Q Consensus 232 ~i~~g~~l~v~ 242 (246)
.|. |.-|=|.
T Consensus 85 ii~-G~mIGV~ 94 (132)
T 3p3d_A 85 VFN-GVLLGVI 94 (132)
T ss_dssp EET-TEECEEE
T ss_pred EeC-cEEEEEE
Confidence 998 7644443
No 400
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.87 E-value=0.0093 Score=39.62 Aligned_cols=69 Identities=10% Similarity=0.084 Sum_probs=51.9
Q ss_pred CCCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCC----CCc-cEEEEEEcCHHHHHHHHHHhcCCccC
Q psy4057 8 ICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL----KMR-GQAFVIFKEIASATNALRSMQGFPFY 76 (246)
Q Consensus 8 ~~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~----~~k-g~aFV~f~~~~~A~~Ai~~lng~~~~ 76 (246)
...+-+|.|+.||+.+||+++.+.++..-++......... .+. ..|+|.|.+.++.....+..+|..|.
T Consensus 6 ~~~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 6 HHHSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred cccceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 3456789999999999999988888876554332221211 111 56999999999999999999998874
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=93.53 E-value=0.28 Score=42.86 Aligned_cols=57 Identities=23% Similarity=0.295 Sum_probs=48.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCCccEEEEEeCCHHHHHHHHHHhCC
Q psy4057 170 PNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHG 230 (246)
Q Consensus 170 ~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g 230 (246)
...+++|+ +|..+...+|.++|+.||. .+|+.+.+. .|||.|.+.+.|..++..+..
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widdt--~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDDT--SAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSSS--EEEEECSCHHHHHHHHHHHTT
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcCC--eEEEEECCHHHHHHHHHHHHh
Confidence 46788887 9999999999999999996 466666664 699999999999999998854
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=92.07 E-value=0.38 Score=42.04 Aligned_cols=56 Identities=25% Similarity=0.323 Sum_probs=44.4
Q ss_pred CcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcC
Q psy4057 11 TNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQG 72 (246)
Q Consensus 11 ~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng 72 (246)
...++|+ .|..+...+|.++|+.||.+ +|..+ +...|||.|.+.+.|..++..++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~wi----ddt~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWI----DDTSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEEC----SSSEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEE----cCCeEEEEECCHHHHHHHHHHHHh
Confidence 4566666 88888899999999999954 44332 446799999999999999998753
No 403
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=89.34 E-value=0.8 Score=28.57 Aligned_cols=69 Identities=12% Similarity=0.211 Sum_probs=42.0
Q ss_pred EEEEc-CCCCCCCHHHHHHHHccCCCc-----eEEEEeeCCccEEEEEeCCHHHHHHHHHHhCCCccCCCCceEEEeecC
Q psy4057 173 ILFLT-NLPEETSEMMLSMLFNQFPGF-----KEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246 (246)
Q Consensus 173 ~l~v~-nL~~~~t~e~l~~~f~~~G~i-----~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~~g~~l~v~~ak~ 246 (246)
+|++. +=-..++.-+|..++..-+.+ -.|.+.. .|.||+-.. +.|..+++.|++..+. |+.++|+.++|
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d---~~s~v~v~~-~~~~~~~~~l~~~~i~-g~~~~v~~~~~ 76 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMD---NASYVEILN-GKGPHVLKVMKNTTVK-GKQLKVNKANK 76 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECS---SCEEEEECT-TCHHHHHHHHTTCCC----CCCEEECC-
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeC---CcEEEEECH-HHHHHHHHHhccccCc-CceEEEEECCC
Confidence 35553 223356666777777666655 3344432 378998874 5577889999999999 99999998875
No 404
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=72.11 E-value=3.2 Score=25.67 Aligned_cols=68 Identities=12% Similarity=0.136 Sum_probs=39.8
Q ss_pred EEEe-cCCChhhhHHHHHHHhhccCC-----eeEEEEccCCCCccEEEEEEcCHHHHHHHHHHhcCCccCCeeEEEEEcc
Q psy4057 13 FVYV-THISSTDLKKSLYAIFSQFGQ-----IMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSK 86 (246)
Q Consensus 13 ~l~V-~nl~~~~~e~~l~~~F~~fG~-----i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~ 86 (246)
+||| .+=...+...+|-..+..-+. |-.|.+ ...|.||+-... .|..++..|++..+.|+.++|..+.
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i-----~d~~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITI-----MDNASYVEILNG-KGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEE-----CSSCEEEEECTT-CHHHHHHHHTTCCC---CCCEEECC
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEE-----eCCcEEEEECHH-HHHHHHHHhccccCcCceEEEEECC
Confidence 4566 222333444555555554433 444544 446899988765 4778899999999999999998763
No 405
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=62.25 E-value=28 Score=22.32 Aligned_cols=58 Identities=16% Similarity=0.168 Sum_probs=47.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHccCCCceEEEEeeCCccEEEEEeCCHHHHHHHHHHhCC
Q psy4057 170 PNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHG 230 (246)
Q Consensus 170 ~~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g 230 (246)
.++.+-+-|+|..+-..++--.....|.--.+..+.+ .|.|.|.+.++...|++.|-+
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyidg---qamirfqnsdeqrlaiqklln 68 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYIDG---QAMIRFQNSDEQRLAIQKLLN 68 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECSS---CEEEEESSHHHHHHHHHHHEE
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeecC---eeEEEecCChHHHHHHHHHHh
Confidence 5788888999999888887777777787777776654 599999999999999998743
No 406
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=53.56 E-value=35 Score=24.92 Aligned_cols=55 Identities=24% Similarity=0.175 Sum_probs=36.1
Q ss_pred CcEEEEcCCCC-C--------CCHHHHHHHH--ccCCCceEEEEeeCC---ccEEEEEeCC-HHHHHHHHH
Q psy4057 171 NQILFLTNLPE-E--------TSEMMLSMLF--NQFPGFKEVRLVPNR---HDIAFVEFEN-EMQSAAAKL 226 (246)
Q Consensus 171 ~~~l~v~nL~~-~--------~t~e~l~~~f--~~~G~i~~v~~~~~~---~g~afV~f~~-~~~A~~Al~ 226 (246)
.-+.+|.|+|. . .+..+|++.| +.|.+++ |+.+.+. .|+++|.|.+ ..--..|+.
T Consensus 12 PwmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 12 PWKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYLGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp SCEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSSBEEEEEEEECCSSHHHHHHHHH
T ss_pred CCEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCCCCceeEEEEecCChHHHHHHHH
Confidence 34567788886 2 3447899977 9999965 5555544 4789999975 333344443
No 407
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=35.17 E-value=39 Score=24.65 Aligned_cols=39 Identities=18% Similarity=0.106 Sum_probs=29.9
Q ss_pred HHHHHHHh--hccCCeeEEEEccCCCCccEEEEEEcCHHHH
Q psy4057 25 KKSLYAIF--SQFGQIMDIVALKTLKMRGQAFVIFKEIASA 63 (246)
Q Consensus 25 e~~l~~~F--~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A 63 (246)
-.+|.+.| ..|.++....+.....+.|+|.|.|.+.-+.
T Consensus 35 ~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~G 75 (172)
T 4e8u_A 35 GSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNG 75 (172)
T ss_dssp SHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHHH
T ss_pred HHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChHH
Confidence 36778867 9999877666655556789999999987554
No 408
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=31.70 E-value=1e+02 Score=19.60 Aligned_cols=56 Identities=16% Similarity=0.179 Sum_probs=35.6
Q ss_pred EEecCCChhhhHHHHHHHhhc-cC-CeeEEEEccCCCCccEEEEEEcCHHHHHHHHHH
Q psy4057 14 VYVTHISSTDLKKSLYAIFSQ-FG-QIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69 (246)
Q Consensus 14 l~V~nl~~~~~e~~l~~~F~~-fG-~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~ 69 (246)
-|+..+..+.++.++++..+. || .|.+|..+.......=|+|++....+|......
T Consensus 25 ~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~KKA~V~L~~~~~a~dva~k 82 (86)
T 3j21_T 25 KLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGEKKAYVKLKPEYSASEVAAR 82 (86)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEECTTSCHHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCceEEEEEcCCCCcHHHHHHh
Confidence 344455566677777777764 45 456665544433444599999998888775443
No 409
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=26.36 E-value=1.3e+02 Score=19.20 Aligned_cols=57 Identities=16% Similarity=0.225 Sum_probs=44.3
Q ss_pred CCCcEEEecCCChhhhHHHHHHHhhccCCeeEEEEccCCCCccEEEEEEcCHHHHHHHHHHh
Q psy4057 9 CVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSM 70 (246)
Q Consensus 9 ~~~~~l~V~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~~~~~A~~Ai~~l 70 (246)
.-++-+-|-|+|..+.+.++--.-...|---.+.. -.|.|.+.|.+.++-+-|+..|
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdy-----idgqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDY-----IDGQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEE-----CSSCEEEEESSHHHHHHHHHHH
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeee-----ecCeeEEEecCChHHHHHHHHH
Confidence 34555667899999999998777778884444433 2388999999999999999877
No 410
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=26.03 E-value=1.2e+02 Score=19.90 Aligned_cols=49 Identities=18% Similarity=0.278 Sum_probs=28.9
Q ss_pred cCCChhhhHHHHHHHhhccCCeeEEEEccCC----CCccEEEEEEcCHHHHHHH
Q psy4057 17 THISSTDLKKSLYAIFSQFGQIMDIVALKTL----KMRGQAFVIFKEIASATNA 66 (246)
Q Consensus 17 ~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~----~~kg~aFV~f~~~~~A~~A 66 (246)
+..+.....+.|-.++..=.++.-|.-+++. ++.|||.| |.+.+.|.+.
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~ 80 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQV 80 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 3556666666677777665655555544432 56677755 5555555443
No 411
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=25.32 E-value=14 Score=26.29 Aligned_cols=28 Identities=11% Similarity=0.029 Sum_probs=17.0
Q ss_pred HHHHHHhhccCCeeEEEEccCCCCccEEEEEEc
Q psy4057 26 KSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFK 58 (246)
Q Consensus 26 ~~l~~~F~~fG~i~~v~~~~~~~~kg~aFV~f~ 58 (246)
+|+.++|...|.|.-. . ..+||+||+-.
T Consensus 2 ~~~~~l~~~~G~Vkwf---n--~~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWF---N--VRMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEE---E--TTTTEEEEEEE
T ss_pred CcccccccceeEEEEE---E--CCCCeeEEeeC
Confidence 3455667777765553 2 37899999976
No 412
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=24.88 E-value=1.4e+02 Score=19.66 Aligned_cols=48 Identities=19% Similarity=0.295 Sum_probs=28.7
Q ss_pred cCCChhhhHHHHHHHhhccCCeeEEEEccCC----CCccEEEEEEcCHHHHHH
Q psy4057 17 THISSTDLKKSLYAIFSQFGQIMDIVALKTL----KMRGQAFVIFKEIASATN 65 (246)
Q Consensus 17 ~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~----~~kg~aFV~f~~~~~A~~ 65 (246)
...+.....+.|-.++..=.++.-|.-+++. ++.|||.| |.+.+.|.+
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 3456666666676766665555555444432 66788865 566666654
No 413
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=23.41 E-value=1.7e+02 Score=19.42 Aligned_cols=48 Identities=19% Similarity=0.169 Sum_probs=29.2
Q ss_pred cCCChhhhHHHHHHHhhccCCeeEEEEccCC----CCccEEEEEEcCHHHHHH
Q psy4057 17 THISSTDLKKSLYAIFSQFGQIMDIVALKTL----KMRGQAFVIFKEIASATN 65 (246)
Q Consensus 17 ~nl~~~~~e~~l~~~F~~fG~i~~v~~~~~~----~~kg~aFV~f~~~~~A~~ 65 (246)
+..+.....+.|-.++..=.++.-|.-+++. ++.|||.| |.+.+.|.+
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 88 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLY 88 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 3556666676777777664445555444432 66788865 566666654
No 414
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.11 E-value=46 Score=19.98 Aligned_cols=12 Identities=25% Similarity=0.357 Sum_probs=9.8
Q ss_pred CccEEEEEEcCH
Q psy4057 49 MRGQAFVIFKEI 60 (246)
Q Consensus 49 ~kg~aFV~f~~~ 60 (246)
.+..|||.|.+.
T Consensus 36 ~~~~ClV~FeD~ 47 (68)
T 2e5p_A 36 AREVCLVQFEDD 47 (68)
T ss_dssp TTTEEEEEETTT
T ss_pred CCcEEEEEEccC
Confidence 578899999864
No 415
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=21.47 E-value=75 Score=24.88 Aligned_cols=32 Identities=19% Similarity=0.364 Sum_probs=25.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHccCCCceEEEE
Q psy4057 171 NQILFLTNLPEETSEMMLSMLFNQFPGFKEVRL 203 (246)
Q Consensus 171 ~~~l~v~nL~~~~t~e~l~~~f~~~G~i~~v~~ 203 (246)
...++|+|||+.++..-|..++.. +.+..+.+
T Consensus 110 ~~~~iv~NlPy~iss~il~~ll~~-~~~~~~~l 141 (271)
T 3fut_A 110 QGSLLVANLPYHIATPLVTRLLKT-GRFARLVF 141 (271)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHH-CCEEEEEE
T ss_pred CccEEEecCcccccHHHHHHHhcC-CCCCEEEE
Confidence 346789999999999999999987 66654443
No 416
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=20.92 E-value=88 Score=20.70 Aligned_cols=35 Identities=14% Similarity=0.089 Sum_probs=27.6
Q ss_pred CceEEEEeeCCccEEEEEeCCHHHHHHHHHHhCCC
Q psy4057 197 GFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGF 231 (246)
Q Consensus 197 ~i~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~ 231 (246)
.|.++....+-+||-||+=.+..+...|++.+-+.
T Consensus 40 ~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~v 74 (106)
T 3h7h_B 40 QIKSVVAPEHVKGYIYVEAYKQTHVKQAIEGVGNL 74 (106)
T ss_dssp CCCEEEECTTCCSEEEEEESSHHHHHHHHTTCGGG
T ss_pred ceEEEEecCCCceEEEEEeCCHHHHHHHHhcccce
Confidence 36777777776899999999998888887766543
No 417
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=20.82 E-value=54 Score=20.30 Aligned_cols=12 Identities=25% Similarity=0.357 Sum_probs=9.8
Q ss_pred CccEEEEEEcCH
Q psy4057 49 MRGQAFVIFKEI 60 (246)
Q Consensus 49 ~kg~aFV~f~~~ 60 (246)
.+..|+|.|.+.
T Consensus 53 ~~e~ClV~F~D~ 64 (79)
T 2m0o_A 53 AREVCLVQFEDD 64 (79)
T ss_dssp TTTEEEEEETTS
T ss_pred CCCEEEEEEcCC
Confidence 578899999864
No 418
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=20.42 E-value=1.4e+02 Score=18.89 Aligned_cols=52 Identities=12% Similarity=0.129 Sum_probs=32.3
Q ss_pred EecCCChhhhHHHHHHHhhc-cC-CeeEEEEccCCCCccEEEEEEcCHHHHHHH
Q psy4057 15 YVTHISSTDLKKSLYAIFSQ-FG-QIMDIVALKTLKMRGQAFVIFKEIASATNA 66 (246)
Q Consensus 15 ~V~nl~~~~~e~~l~~~F~~-fG-~i~~v~~~~~~~~kg~aFV~f~~~~~A~~A 66 (246)
|+..+..+.++.++++.++. || .|..|..+...+...-|+|+.....+|...
T Consensus 25 ~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~~~KKA~VtL~~g~~aid~ 78 (85)
T 1vq8_S 25 LQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDGEKKAVVRLSEDDDAQEV 78 (85)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSSEEEEEEECTTSCHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecCCCceEEEEEECCCCcHHHH
Confidence 45455566677777776654 45 466665555443344599999887776544
Done!