Your job contains 1 sequence.
>psy4057
MNIILAHICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEI
ASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDPAEAK
KSKKKAAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLP
EETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKITPTHAMK
ISFAKK
The BLAST search returned 8 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy4057
(246 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0003449 - symbol:snf "sans fille" species:7227 "Dr... 392 1.6e-73 2
UNIPROTKB|Q2KIR1 - symbol:SNRPA "U1 small nuclear ribonuc... 370 9.8e-68 2
UNIPROTKB|P09012 - symbol:SNRPA "U1 small nuclear ribonuc... 370 9.8e-68 2
UNIPROTKB|Q06AA4 - symbol:SNRPA "U1 small nuclear ribonuc... 370 9.8e-68 2
RGD|1307416 - symbol:Snrpa "small nuclear ribonucleoprote... 370 9.8e-68 2
UNIPROTKB|F1M6Z8 - symbol:Snrpa "Protein Snrpa" species:1... 370 9.8e-68 2
ZFIN|ZDB-GENE-030131-2841 - symbol:snrpa "small nuclear r... 361 2.6e-67 2
UNIPROTKB|E1C0I4 - symbol:SNRPB2 "Uncharacterized protein... 352 4.2e-67 2
MGI|MGI:1855690 - symbol:Snrpa "small nuclear ribonucleop... 362 6.8e-67 2
UNIPROTKB|G5E5Y0 - symbol:SNRPB2 "Uncharacterized protein... 351 8.7e-67 2
UNIPROTKB|E2R2A8 - symbol:SNRPB2 "Uncharacterized protein... 351 8.7e-67 2
UNIPROTKB|P08579 - symbol:SNRPB2 "U2 small nuclear ribonu... 351 8.7e-67 2
MGI|MGI:104805 - symbol:Snrpb2 "U2 small nuclear ribonucl... 351 8.7e-67 2
RGD|1310194 - symbol:Snrpb2 "small nuclear ribonucleoprot... 351 8.7e-67 2
UNIPROTKB|J9NSX4 - symbol:LOC100683259 "Uncharacterized p... 348 1.8e-66 2
ZFIN|ZDB-GENE-060616-2 - symbol:snrpb2 "small nuclear rib... 354 3.3e-65 2
TAIR|locus:2007417 - symbol:AT1G06960 species:3702 "Arabi... 307 6.1e-52 2
TAIR|locus:2065742 - symbol:U2B'' "U2 small nuclear ribon... 294 2.9e-50 2
UNIPROTKB|A2Y0J7 - symbol:OsI_18512 "U1 small nuclear rib... 296 1.2e-47 2
UNIPROTKB|Q0DKM4 - symbol:LOC_Os05g06280 "U1 small nuclea... 296 1.2e-47 2
WB|WBGene00004386 - symbol:rnp-3 species:6239 "Caenorhabd... 295 2.0e-45 2
UNIPROTKB|Q21323 - symbol:rnp-3 "Protein RNP-3" species:6... 295 2.0e-45 2
UNIPROTKB|B8AM21 - symbol:OsI_11177 "U2 small nuclear rib... 248 2.6e-45 2
UNIPROTKB|Q10MR0 - symbol:LOC_Os03g18720 "U2 small nuclea... 248 3.3e-45 2
WB|WBGene00004385 - symbol:rnp-2 species:6239 "Caenorhabd... 265 1.8e-44 2
DICTYBASE|DDB_G0288391 - symbol:snrpB2 "U2 small nuclear ... 257 4.1e-43 2
TAIR|locus:2061976 - symbol:U1A "spliceosomal protein U1A... 260 5.2e-43 2
POMBASE|SPBC4B4.07c - symbol:usp102 "U1 snRNP-associated ... 210 9.0e-34 2
UNIPROTKB|F1PFC6 - symbol:SNRPA "Uncharacterized protein"... 242 2.6e-32 2
ASPGD|ASPL0000053720 - symbol:AN0109 species:162425 "Emer... 185 1.1e-31 2
UNIPROTKB|J9NXJ9 - symbol:SNRPA "Uncharacterized protein"... 340 6.9e-31 1
UNIPROTKB|G4MSP6 - symbol:MGG_07085 "Small nuclear ribonu... 182 2.3e-29 2
GENEDB_PFALCIPARUM|MAL13P1.35 - symbol:MAL13P1.35 "u1 sma... 180 6.1e-24 2
UNIPROTKB|C0H5A4 - symbol:MAL13P1.35 "U1 small nuclear ri... 180 6.1e-24 2
CGD|CAL0004764 - symbol:orf19.7375 species:5476 "Candida ... 169 3.7e-22 2
UNIPROTKB|Q5A4F9 - symbol:USA1 "Putative uncharacterized ... 169 3.7e-22 2
ASPGD|ASPL0000027676 - symbol:AN5779 species:162425 "Emer... 242 1.7e-20 1
UNIPROTKB|G4MYZ3 - symbol:MGG_04351 "U2 small nuclear rib... 221 2.8e-18 1
POMBASE|SPBC8D2.09c - symbol:msl1 "U2 snRNP-associated pr... 190 5.4e-15 1
GENEDB_PFALCIPARUM|PF13_0122 - symbol:PF13_0122 "cyclophi... 130 1.2e-08 1
UNIPROTKB|C0H5C7 - symbol:PF13_0122 "RRM containing cyclo... 130 1.2e-08 1
CGD|CAL0004460 - symbol:orf19.4748 species:5476 "Candida ... 129 1.6e-08 1
UNIPROTKB|Q5AQ60 - symbol:MSL1 "Putative uncharacterized ... 129 1.6e-08 1
SGD|S000001448 - symbol:MSL1 "U2B component of U2 snRNP" ... 124 5.4e-08 1
RGD|727953 - symbol:Smptb "polypyrimidine tract-binding p... 110 1.5e-07 2
DICTYBASE|DDB_G0293252 - symbol:DDB_G0293252 "putative RN... 92 1.3e-06 2
ZFIN|ZDB-GENE-050320-141 - symbol:ptbp2a "polypyrimidine ... 98 6.5e-06 2
POMBASE|SPBC29A3.07c - symbol:sab14 "U2 snRNP-associated ... 106 7.6e-06 1
TAIR|locus:2135605 - symbol:AT4G12640 species:3702 "Arabi... 89 1.8e-05 2
UNIPROTKB|P26599 - symbol:PTBP1 "Polypyrimidine tract-bin... 92 1.9e-05 2
UNIPROTKB|K7EJV5 - symbol:CIRBP "Cold-inducible RNA-bindi... 102 2.2e-05 1
UNIPROTKB|K7GNR2 - symbol:RBMX "Uncharacterized protein" ... 102 2.2e-05 1
WB|WBGene00004207 - symbol:ptb-1 species:6239 "Caenorhabd... 100 2.4e-05 2
UNIPROTKB|J9P5T5 - symbol:PTBP1 "Uncharacterized protein"... 91 2.7e-05 2
UNIPROTKB|F1S6R7 - symbol:PTBP1 "Polypyrimidine tract-bin... 91 2.7e-05 2
UNIPROTKB|Q29099 - symbol:PTBP1 "Polypyrimidine tract-bin... 91 2.7e-05 2
UNIPROTKB|F1PCJ7 - symbol:PTBP1 "Uncharacterized protein"... 91 2.7e-05 2
UNIPROTKB|A6NLN1 - symbol:PTBP1 "Polypyrimidine tract-bin... 92 2.8e-05 2
FB|FBgn0035692 - symbol:CG13298 species:7227 "Drosophila ... 101 2.9e-05 1
MGI|MGI:97791 - symbol:Ptbp1 "polypyrimidine tract bindin... 90 3.2e-05 2
UNIPROTKB|D4AB53 - symbol:Ptbp1 "Polypyrimidine tract-bin... 90 3.2e-05 2
UNIPROTKB|Q8WN55 - symbol:PTBP1 "Polypyrimidine tract-bin... 90 3.2e-05 2
UNIPROTKB|F1LM18 - symbol:Ptbp1 "Polypyrimidine tract-bin... 90 3.6e-05 2
RGD|62047 - symbol:Ptbp1 "polypyrimidine tract binding pr... 90 3.6e-05 2
UNIPROTKB|Q6P736 - symbol:Ptbp1 "Polypyrimidine tract bin... 90 3.6e-05 2
DICTYBASE|DDB_G0290307 - symbol:DDB_G0290307 "ELAVL1-like... 108 3.9e-05 2
UNIPROTKB|I3LP39 - symbol:LOC100515203 "Uncharacterized p... 95 4.1e-05 2
UNIPROTKB|I3LDE4 - symbol:LOC100515203 "Uncharacterized p... 95 4.3e-05 2
ZFIN|ZDB-GENE-060810-49 - symbol:ptbp2b "polypyrimidine t... 89 4.4e-05 2
GENEDB_PFALCIPARUM|PFF0320c - symbol:PFF0320c "polypyrimi... 95 4.5e-05 2
UNIPROTKB|C6KSR3 - symbol:PFF0320c "Polypyrimidine tract ... 95 4.5e-05 2
UNIPROTKB|H0YBU9 - symbol:RBPMS "RNA-binding protein with... 99 4.9e-05 1
UNIPROTKB|H0YEY9 - symbol:RNPC3 "RNA-binding protein 40" ... 99 4.9e-05 1
UNIPROTKB|H3BR27 - symbol:RBMX "RNA-binding motif protein... 99 4.9e-05 1
RGD|1561067 - symbol:Rbpms "RNA binding protein with mult... 99 4.9e-05 1
UNIPROTKB|F1P5K0 - symbol:PTBP1 "Uncharacterized protein"... 89 5.2e-05 2
UNIPROTKB|E1BVR1 - symbol:PTBP1 "Uncharacterized protein"... 89 5.4e-05 2
DICTYBASE|DDB_G0286297 - symbol:DDB_G0286297 "putative sp... 98 6.4e-05 1
SGD|S000000323 - symbol:MUD1 "U1 snRNP A protein" species... 111 8.2e-05 2
UNIPROTKB|K7GMF5 - symbol:RBMX "Uncharacterized protein" ... 97 8.3e-05 1
UNIPROTKB|K7GQ39 - symbol:RBMX "Uncharacterized protein" ... 97 8.3e-05 1
UNIPROTKB|E2RSK4 - symbol:PTBP2 "Uncharacterized protein"... 95 8.6e-05 2
UNIPROTKB|E1BW94 - symbol:SF3B14 "Uncharacterized protein... 96 0.00011 1
UNIPROTKB|Q2KIQ7 - symbol:SF3B14 "Uncharacterized protein... 96 0.00011 1
UNIPROTKB|E2RRA3 - symbol:SF3B14 "Uncharacterized protein... 96 0.00011 1
UNIPROTKB|Q9Y3B4 - symbol:SF3B14 "Pre-mRNA branch site pr... 96 0.00011 1
UNIPROTKB|F2Z5F1 - symbol:LOC100521960 "Uncharacterized p... 96 0.00011 1
MGI|MGI:1913305 - symbol:0610009D07Rik "RIKEN cDNA 061000... 96 0.00011 1
ZFIN|ZDB-GENE-040625-36 - symbol:sf3b14 "splicing factor ... 96 0.00011 1
UNIPROTKB|K7ENX8 - symbol:CIRBP "Cold-inducible RNA-bindi... 95 0.00014 1
TAIR|locus:2079502 - symbol:RS31 "arginine/serine-rich sp... 89 0.00015 2
UNIPROTKB|K7ELV6 - symbol:CIRBP "Cold-inducible RNA-bindi... 94 0.00018 1
UNIPROTKB|I3LLT9 - symbol:ZCRB1 "Uncharacterized protein"... 94 0.00018 1
WB|WBGene00004315 - symbol:rbd-1 species:6239 "Caenorhabd... 91 0.00020 2
TAIR|locus:2009036 - symbol:PAB1 "poly(A) binding protein... 90 0.00021 2
DICTYBASE|DDB_G0270634 - symbol:DDB_G0270634 "putative sp... 101 0.00025 2
UNIPROTKB|F1S548 - symbol:LOC100739008 "Uncharacterized p... 95 0.00031 2
UNIPROTKB|D4A7H6 - symbol:Elavl2 "ELAV-like protein 2" sp... 85 0.00033 2
UNIPROTKB|F1NF69 - symbol:SART3 "Uncharacterized protein"... 95 0.00034 2
UNIPROTKB|Q12926 - symbol:ELAVL2 "ELAV-like protein 2" sp... 85 0.00036 2
WARNING: Descriptions of 34 database sequences were not reported due to the
limiting value of parameter V = 100.
>FB|FBgn0003449 [details] [associations]
symbol:snf "sans fille" species:7227 "Drosophila
melanogaster" [GO:0048477 "oogenesis" evidence=IMP;TAS] [GO:0030532
"small nuclear ribonucleoprotein complex" evidence=ISS;NAS;IDA]
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;ISS;NAS] [GO:0019099 "female
germ-line sex determination" evidence=NAS] [GO:0005692 "U11 snRNP"
evidence=ISS] [GO:0030619 "U1 snRNA binding" evidence=IDA;NAS]
[GO:0003729 "mRNA binding" evidence=ISS;NAS] [GO:0005634 "nucleus"
evidence=IC;NAS;TAS] [GO:0007539 "primary sex determination, soma"
evidence=NAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0005685
"U1 snRNP" evidence=ISS] [GO:0005686 "U2 snRNP" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0043234 "protein complex" evidence=IPI]
[GO:0005515 "protein binding" evidence=IPI] [GO:0071011
"precatalytic spliceosome" evidence=IDA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0035614 "snRNA stem-loop
binding" evidence=IDA] [GO:0030620 "U2 snRNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0043234
GO:GO:0000166 EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0048477 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
GO:GO:0005686 GO:GO:0019099 GO:GO:0000381 GO:GO:0007539
GO:GO:0005685 eggNOG:NOG317159 GeneTree:ENSGT00390000007046
GO:GO:0030620 PANTHER:PTHR10501 GO:GO:0030619 OMA:MSQAPRM
EMBL:M89775 EMBL:L29521 EMBL:AY061491 PIR:A54279 RefSeq:NP_511045.1
UniGene:Dm.2625 PDB:2AYM PDB:2B0G PDB:2K3K PDBsum:2AYM PDBsum:2B0G
PDBsum:2K3K ProteinModelPortal:P43332 SMR:P43332 DIP:DIP-23676N
IntAct:P43332 MINT:MINT-1634151 STRING:P43332 PaxDb:P43332
PRIDE:P43332 EnsemblMetazoa:FBtr0070748 GeneID:31442
KEGG:dme:Dmel_CG4528 CTD:31442 FlyBase:FBgn0003449
InParanoid:P43332 OrthoDB:EOG4TMPJ8 PhylomeDB:P43332 ChiTaRS:snf
EvolutionaryTrace:P43332 GenomeRNAi:31442 NextBio:773664
Bgee:P43332 GermOnline:CG4528 GO:GO:0035614 Uniprot:P43332
Length = 216
Score = 392 (143.0 bits), Expect = 1.6e-73, Sum P(2) = 1.6e-73
Identities = 77/98 (78%), Positives = 88/98 (89%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
I +LKKSLYAIFSQFGQI+DIVALKTLKMRGQAFVIFKEI SA+NALR+MQGFPFYDK
Sbjct: 18 IKKEELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIGSASNALRTMQGFPFYDK 77
Query: 79 PMRIQYSKTDSDVISKIKGTFMERPKKVRK-QPAPVED 115
PM+I YSK+DSD+++KIKGTF ERPKKV+ +PAP D
Sbjct: 78 PMQIAYSKSDSDIVAKIKGTFKERPKKVKPPKPAPGTD 115
Score = 369 (135.0 bits), Expect = 1.6e-73, Sum P(2) = 1.6e-73
Identities = 72/80 (90%), Positives = 75/80 (93%)
Query: 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKL 226
EQPPNQILFLTNLPEET+EMMLSMLFNQFPGFKEVRLVPNRHDIAFVEF E+QS AAK
Sbjct: 137 EQPPNQILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFTTELQSNAAKE 196
Query: 227 ALHGFKITPTHAMKISFAKK 246
AL GFKITPTHAMKI+FAKK
Sbjct: 197 ALQGFKITPTHAMKITFAKK 216
>UNIPROTKB|Q2KIR1 [details] [associations]
symbol:SNRPA "U1 small nuclear ribonucleoprotein A"
species:9913 "Bos taurus" [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0017069 "snRNA
binding" evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0000398
GO:GO:0017069 eggNOG:NOG317159 GeneTree:ENSGT00390000007046
PANTHER:PTHR10501 HSSP:P09012 HOGENOM:HOG000217519 KO:K11091
HOVERGEN:HBG000895 EMBL:BC112544 IPI:IPI00704416
RefSeq:NP_001039504.1 UniGene:Bt.92011 ProteinModelPortal:Q2KIR1
SMR:Q2KIR1 STRING:Q2KIR1 PRIDE:Q2KIR1 Ensembl:ENSBTAT00000011963
GeneID:509802 KEGG:bta:509802 CTD:6626 InParanoid:Q2KIR1
OMA:MSQAPRM OrthoDB:EOG498V1W NextBio:20869138 Uniprot:Q2KIR1
Length = 282
Score = 370 (135.3 bits), Expect = 9.8e-68, Sum P(2) = 9.8e-68
Identities = 72/99 (72%), Positives = 86/99 (86%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
I +LKKSLYAIFSQFGQI+DI+ ++LKMRGQAFVIFKE++SATNALRSMQGFPFYDK
Sbjct: 21 IKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK 80
Query: 79 PMRIQYSKTDSDVISKIKGTFMERPKKVRKQ-PAPVEDP 116
PMRIQY+KTDSD+I+K+KGTF+ER +K K+ P E P
Sbjct: 81 PMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETP 119
Score = 336 (123.3 bits), Expect = 9.8e-68, Sum P(2) = 9.8e-68
Identities = 65/80 (81%), Positives = 72/80 (90%)
Query: 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKL 226
E PPN ILFLTNLPEET+E+MLSMLFNQFPGFKEVRLVP RHDIAFVEF+NE+Q+ AA+
Sbjct: 203 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARD 262
Query: 227 ALHGFKITPTHAMKISFAKK 246
AL GFKIT +AMKISFAKK
Sbjct: 263 ALQGFKITQNNAMKISFAKK 282
>UNIPROTKB|P09012 [details] [associations]
symbol:SNRPA "U1 small nuclear ribonucleoprotein A"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0017069 "snRNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;TAS] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0000398 GO:GO:0017069
eggNOG:NOG317159 PANTHER:PTHR10501 PDB:3PGW PDBsum:3PGW
HOGENOM:HOG000217519 KO:K11091 HOVERGEN:HBG000895 CTD:6626
OMA:MSQAPRM OrthoDB:EOG498V1W EMBL:M60784 EMBL:M60779 EMBL:M60780
EMBL:M60781 EMBL:M60782 EMBL:M60783 EMBL:X06347 EMBL:BC000405
EMBL:BC008290 IPI:IPI00012382 PIR:JQ1528 RefSeq:NP_004587.1
UniGene:Hs.466775 PDB:1AUD PDB:1CX0 PDB:1DRZ PDB:1DZ5 PDB:1FHT
PDB:1M5K PDB:1M5O PDB:1M5P PDB:1M5V PDB:1NU4 PDB:1OIA PDB:1SJ3
PDB:1SJ4 PDB:1SJF PDB:1U6B PDB:1URN PDB:1VBX PDB:1VBY PDB:1VBZ
PDB:1VC0 PDB:1VC5 PDB:1VC6 PDB:1VC7 PDB:1ZZN PDB:2A3J PDB:2NZ4
PDB:2OIH PDB:2OJ3 PDB:2U1A PDB:3BO2 PDB:3BO3 PDB:3BO4 PDB:3CUL
PDB:3CUN PDB:3EGZ PDB:3G8S PDB:3G8T PDB:3G96 PDB:3G9C PDB:3HHN
PDB:3IIN PDB:3IRW PDB:3IWN PDB:3K0J PDB:3L3C PDB:3MUM PDB:3MUR
PDB:3MUT PDB:3MUV PDB:3MXH PDB:3P49 PDB:3R1H PDB:3R1L PDB:3UCU
PDB:3UCZ PDB:3UD3 PDB:3UD4 PDB:3UTR PDBsum:1AUD PDBsum:1CX0
PDBsum:1DRZ PDBsum:1DZ5 PDBsum:1FHT PDBsum:1M5K PDBsum:1M5O
PDBsum:1M5P PDBsum:1M5V PDBsum:1NU4 PDBsum:1OIA PDBsum:1SJ3
PDBsum:1SJ4 PDBsum:1SJF PDBsum:1U6B PDBsum:1URN PDBsum:1VBX
PDBsum:1VBY PDBsum:1VBZ PDBsum:1VC0 PDBsum:1VC5 PDBsum:1VC6
PDBsum:1VC7 PDBsum:1ZZN PDBsum:2A3J PDBsum:2NZ4 PDBsum:2OIH
PDBsum:2OJ3 PDBsum:2U1A PDBsum:3BO2 PDBsum:3BO3 PDBsum:3BO4
PDBsum:3CUL PDBsum:3CUN PDBsum:3EGZ PDBsum:3G8S PDBsum:3G8T
PDBsum:3G96 PDBsum:3G9C PDBsum:3HHN PDBsum:3IIN PDBsum:3IRW
PDBsum:3IWN PDBsum:3K0J PDBsum:3L3C PDBsum:3MUM PDBsum:3MUR
PDBsum:3MUT PDBsum:3MUV PDBsum:3MXH PDBsum:3P49 PDBsum:3R1H
PDBsum:3R1L PDBsum:3UCU PDBsum:3UCZ PDBsum:3UD3 PDBsum:3UD4
PDBsum:3UTR ProteinModelPortal:P09012 SMR:P09012 DIP:DIP-29407N
IntAct:P09012 MINT:MINT-125665 STRING:P09012 PhosphoSite:P09012
DMDM:134092 PaxDb:P09012 PeptideAtlas:P09012 PRIDE:P09012
Ensembl:ENST00000243563 GeneID:6626 KEGG:hsa:6626 UCSC:uc002ooz.3
GeneCards:GC19P041256 HGNC:HGNC:11151 HPA:CAB004652 MIM:182285
neXtProt:NX_P09012 PharmGKB:PA35993 InParanoid:P09012
PhylomeDB:P09012 ChiTaRS:SNRPA EvolutionaryTrace:P09012
GenomeRNAi:6626 NextBio:25809 ArrayExpress:P09012 Bgee:P09012
CleanEx:HS_SNRPA Genevestigator:P09012 GermOnline:ENSG00000077312
Uniprot:P09012
Length = 282
Score = 370 (135.3 bits), Expect = 9.8e-68, Sum P(2) = 9.8e-68
Identities = 72/99 (72%), Positives = 86/99 (86%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
I +LKKSLYAIFSQFGQI+DI+ ++LKMRGQAFVIFKE++SATNALRSMQGFPFYDK
Sbjct: 21 IKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK 80
Query: 79 PMRIQYSKTDSDVISKIKGTFMERPKKVRKQ-PAPVEDP 116
PMRIQY+KTDSD+I+K+KGTF+ER +K K+ P E P
Sbjct: 81 PMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETP 119
Score = 336 (123.3 bits), Expect = 9.8e-68, Sum P(2) = 9.8e-68
Identities = 65/80 (81%), Positives = 72/80 (90%)
Query: 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKL 226
E PPN ILFLTNLPEET+E+MLSMLFNQFPGFKEVRLVP RHDIAFVEF+NE+Q+ AA+
Sbjct: 203 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARD 262
Query: 227 ALHGFKITPTHAMKISFAKK 246
AL GFKIT +AMKISFAKK
Sbjct: 263 ALQGFKITQNNAMKISFAKK 282
>UNIPROTKB|Q06AA4 [details] [associations]
symbol:SNRPA "U1 small nuclear ribonucleoprotein A"
species:9823 "Sus scrofa" [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0017069 "snRNA
binding" evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0000398
GO:GO:0017069 eggNOG:NOG317159 GeneTree:ENSGT00390000007046
PANTHER:PTHR10501 HOGENOM:HOG000217519 KO:K11091 HOVERGEN:HBG000895
CTD:6626 OMA:MSQAPRM OrthoDB:EOG498V1W EMBL:DQ972960
RefSeq:NP_001070690.1 UniGene:Ssc.7670 ProteinModelPortal:Q06AA4
SMR:Q06AA4 STRING:Q06AA4 Ensembl:ENSSSCT00000003330 GeneID:768109
KEGG:ssc:768109 ArrayExpress:Q06AA4 Uniprot:Q06AA4
Length = 282
Score = 370 (135.3 bits), Expect = 9.8e-68, Sum P(2) = 9.8e-68
Identities = 72/99 (72%), Positives = 86/99 (86%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
I +LKKSLYAIFSQFGQI+DI+ ++LKMRGQAFVIFKE++SATNALRSMQGFPFYDK
Sbjct: 21 IKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK 80
Query: 79 PMRIQYSKTDSDVISKIKGTFMERPKKVRKQ-PAPVEDP 116
PMRIQY+KTDSD+I+K+KGTF+ER +K K+ P E P
Sbjct: 81 PMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETP 119
Score = 336 (123.3 bits), Expect = 9.8e-68, Sum P(2) = 9.8e-68
Identities = 65/80 (81%), Positives = 72/80 (90%)
Query: 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKL 226
E PPN ILFLTNLPEET+E+MLSMLFNQFPGFKEVRLVP RHDIAFVEF+NE+Q+ AA+
Sbjct: 203 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARD 262
Query: 227 ALHGFKITPTHAMKISFAKK 246
AL GFKIT +AMKISFAKK
Sbjct: 263 ALQGFKITQNNAMKISFAKK 282
>RGD|1307416 [details] [associations]
symbol:Snrpa "small nuclear ribonucleoprotein polypeptide A"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005681 "spliceosomal complex" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1307416
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0000398
EMBL:CH473979 GO:GO:0017069 eggNOG:NOG317159 PANTHER:PTHR10501
HOGENOM:HOG000217519 KO:K11091 HOVERGEN:HBG000895 CTD:6626
OrthoDB:EOG498V1W IPI:IPI00364044 EMBL:BC086331
RefSeq:NP_001008304.1 UniGene:Rn.9347 SMR:Q5U214 STRING:Q5U214
GeneID:292729 KEGG:rno:292729 UCSC:RGD:1307416 InParanoid:Q5U214
NextBio:634621 Genevestigator:Q5U214 Uniprot:Q5U214
Length = 281
Score = 370 (135.3 bits), Expect = 9.8e-68, Sum P(2) = 9.8e-68
Identities = 72/99 (72%), Positives = 86/99 (86%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
I +LKKSLYAIFSQFGQI+DI+ ++LKMRGQAFVIFKE++SATNALRSMQGFPFYDK
Sbjct: 21 IKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK 80
Query: 79 PMRIQYSKTDSDVISKIKGTFMERPKKVRKQ-PAPVEDP 116
PMRIQY+KTDSD+I+K+KGTF+ER +K K+ P E P
Sbjct: 81 PMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETP 119
Score = 336 (123.3 bits), Expect = 9.8e-68, Sum P(2) = 9.8e-68
Identities = 65/80 (81%), Positives = 72/80 (90%)
Query: 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKL 226
E PPN ILFLTNLPEET+E+MLSMLFNQFPGFKEVRLVP RHDIAFVEF+NE+Q+ AA+
Sbjct: 202 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARD 261
Query: 227 ALHGFKITPTHAMKISFAKK 246
AL GFKIT +AMKISFAKK
Sbjct: 262 ALQGFKITQNNAMKISFAKK 281
>UNIPROTKB|F1M6Z8 [details] [associations]
symbol:Snrpa "Protein Snrpa" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0017069 "snRNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1307416 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0000398 GO:GO:0017069 GeneTree:ENSGT00390000007046
PANTHER:PTHR10501 OMA:MSQAPRM IPI:IPI00364044 PRIDE:F1M6Z8
Ensembl:ENSRNOT00000002053 ArrayExpress:F1M6Z8 Uniprot:F1M6Z8
Length = 285
Score = 370 (135.3 bits), Expect = 9.8e-68, Sum P(2) = 9.8e-68
Identities = 72/99 (72%), Positives = 86/99 (86%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
I +LKKSLYAIFSQFGQI+DI+ ++LKMRGQAFVIFKE++SATNALRSMQGFPFYDK
Sbjct: 25 IKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK 84
Query: 79 PMRIQYSKTDSDVISKIKGTFMERPKKVRKQ-PAPVEDP 116
PMRIQY+KTDSD+I+K+KGTF+ER +K K+ P E P
Sbjct: 85 PMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETP 123
Score = 336 (123.3 bits), Expect = 9.8e-68, Sum P(2) = 9.8e-68
Identities = 65/80 (81%), Positives = 72/80 (90%)
Query: 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKL 226
E PPN ILFLTNLPEET+E+MLSMLFNQFPGFKEVRLVP RHDIAFVEF+NE+Q+ AA+
Sbjct: 206 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARD 265
Query: 227 ALHGFKITPTHAMKISFAKK 246
AL GFKIT +AMKISFAKK
Sbjct: 266 ALQGFKITQNNAMKISFAKK 285
>ZFIN|ZDB-GENE-030131-2841 [details] [associations]
symbol:snrpa "small nuclear ribonucleoprotein
polypeptide A" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0017069 "snRNA binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-2841 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0000398 GO:GO:0017069
EMBL:CU138549 GeneTree:ENSGT00390000007046 PANTHER:PTHR10501
HSSP:P09012 HOGENOM:HOG000217519 KO:K11091 HOVERGEN:HBG000895
CTD:6626 OMA:MSQAPRM EMBL:CABZ01062168 EMBL:BC064308
IPI:IPI00504389 RefSeq:NP_955965.1 UniGene:Dr.76157 SMR:Q6P2T1
STRING:Q6P2T1 Ensembl:ENSDART00000012018 GeneID:324121
KEGG:dre:324121 InParanoid:Q6P2T1 NextBio:20808604 Uniprot:Q6P2T1
Length = 281
Score = 361 (132.1 bits), Expect = 2.6e-67, Sum P(2) = 2.6e-67
Identities = 71/93 (76%), Positives = 83/93 (89%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
I +LKKSLYAIFSQFGQI+DI+ +TLKM+GQAFVIFKEI SA+NALRSMQGFPFYDK
Sbjct: 21 IKKDELKKSLYAIFSQFGQILDILVSRTLKMKGQAFVIFKEINSASNALRSMQGFPFYDK 80
Query: 79 PMRIQYSKTDSDVISKIKGTFMERP-KKVRKQP 110
PMRIQYSK DSD+I+K+KGTF+ER KK +K+P
Sbjct: 81 PMRIQYSKQDSDIIAKMKGTFVERDRKKEKKKP 113
Score = 341 (125.1 bits), Expect = 2.6e-67, Sum P(2) = 2.6e-67
Identities = 66/82 (80%), Positives = 74/82 (90%)
Query: 165 VPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAA 224
V E PPN ILFLTNLPEET+E+MLSMLFNQFPGFKEVRLVP RHDIAFVEF+NE+Q+ AA
Sbjct: 200 VSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAA 259
Query: 225 KLALHGFKITPTHAMKISFAKK 246
+ AL GFKIT ++AMKISFAKK
Sbjct: 260 REALQGFKITQSNAMKISFAKK 281
>UNIPROTKB|E1C0I4 [details] [associations]
symbol:SNRPB2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0017069 "snRNA binding" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0071013 GO:GO:0017069 GeneTree:ENSGT00390000007046
PANTHER:PTHR10501 KO:K11094 OMA:TTANKKP CTD:6629 EMBL:AADN02044178
IPI:IPI00603637 RefSeq:XP_419331.1 UniGene:Gga.4634
ProteinModelPortal:E1C0I4 Ensembl:ENSGALT00000031980 GeneID:421261
KEGG:gga:421261 NextBio:20824053 Uniprot:E1C0I4
Length = 226
Score = 352 (129.0 bits), Expect = 4.2e-67, Sum P(2) = 4.2e-67
Identities = 67/82 (81%), Positives = 74/82 (90%)
Query: 165 VPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAA 224
VP+ PPN ILFL NLPEET+EMMLSMLFNQFPGFKEVRLVP RHDIAFVEFENE Q+ AA
Sbjct: 145 VPDNPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENECQAGAA 204
Query: 225 KLALHGFKITPTHAMKISFAKK 246
+ AL GFKITP+HAMKI++AKK
Sbjct: 205 RDALQGFKITPSHAMKITYAKK 226
Score = 348 (127.6 bits), Expect = 4.2e-67, Sum P(2) = 4.2e-67
Identities = 64/93 (68%), Positives = 81/93 (87%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
I +LK+SLYA+FSQFG ++DIVALKT+KMRGQAFVIFKE+ S+TNALR +QGFPFY K
Sbjct: 18 IKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQLQGFPFYGK 77
Query: 79 PMRIQYSKTDSDVISKIKGTFMERPKKVRKQPA 111
PMRIQY+KTDSD+ISK++GTF ++ K+ K+ A
Sbjct: 78 PMRIQYAKTDSDIISKMRGTFADKEKRKEKKKA 110
>MGI|MGI:1855690 [details] [associations]
symbol:Snrpa "small nuclear ribonucleoprotein polypeptide A"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0017069 "snRNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1855690
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
GO:GO:0000398 GO:GO:0017069 eggNOG:NOG317159
GeneTree:ENSGT00390000007046 PANTHER:PTHR10501 HOGENOM:HOG000217519
KO:K11091 HOVERGEN:HBG000895 CTD:6626 OMA:MSQAPRM OrthoDB:EOG498V1W
EMBL:L15447 EMBL:BC003229 EMBL:BC094006 EMBL:BC096648
IPI:IPI00122350 PIR:S42113 RefSeq:NP_001040102.1 RefSeq:NP_056597.3
UniGene:Mm.386890 ProteinModelPortal:Q62189 SMR:Q62189
STRING:Q62189 PhosphoSite:Q62189 PaxDb:Q62189 PRIDE:Q62189
Ensembl:ENSMUST00000080356 Ensembl:ENSMUST00000122202
Ensembl:ENSMUST00000163311 GeneID:53607 KEGG:mmu:53607
InParanoid:Q62189 NextBio:310305 Bgee:Q62189 CleanEx:MM_SNRPA
Genevestigator:Q62189 GermOnline:ENSMUSG00000061479 Uniprot:Q62189
Length = 287
Score = 362 (132.5 bits), Expect = 6.8e-67, Sum P(2) = 6.8e-67
Identities = 70/99 (70%), Positives = 84/99 (84%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
I +LKKSLYAIFSQFGQI+DI+ + +KMRGQAFVIFKE+ SATNALRSMQGFPFYDK
Sbjct: 27 IKKDELKKSLYAIFSQFGQILDILVSRIMKMRGQAFVIFKEVTSATNALRSMQGFPFYDK 86
Query: 79 PMRIQYSKTDSDVISKIKGTFMERPKKVRKQ-PAPVEDP 116
PMRIQY+KTDSD+I+K+KGT++ER +K K+ P E P
Sbjct: 87 PMRIQYAKTDSDIIAKMKGTYVERDRKREKRKPKSQETP 125
Score = 336 (123.3 bits), Expect = 6.8e-67, Sum P(2) = 6.8e-67
Identities = 65/80 (81%), Positives = 72/80 (90%)
Query: 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKL 226
E PPN ILFLTNLPEET+E+MLSMLFNQFPGFKEVRLVP RHDIAFVEF+NE+Q+ AA+
Sbjct: 208 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARD 267
Query: 227 ALHGFKITPTHAMKISFAKK 246
AL GFKIT +AMKISFAKK
Sbjct: 268 ALQGFKITQNNAMKISFAKK 287
>UNIPROTKB|G5E5Y0 [details] [associations]
symbol:SNRPB2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0017069 "snRNA binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000398 GO:GO:0071013
GO:GO:0017069 GeneTree:ENSGT00390000007046 PANTHER:PTHR10501
KO:K11094 OMA:TTANKKP CTD:6629 EMBL:DAAA02035191
RefSeq:NP_001179481.1 UniGene:Bt.61931 Ensembl:ENSBTAT00000039526
GeneID:767873 KEGG:bta:767873 NextBio:20918232 Uniprot:G5E5Y0
Length = 218
Score = 351 (128.6 bits), Expect = 8.7e-67, Sum P(2) = 8.7e-67
Identities = 65/93 (69%), Positives = 81/93 (87%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
I +LK+SLYA+FSQFG ++DIVALKT+KMRGQAFVIFKE+ S+TNALR +QGFPFY K
Sbjct: 18 IKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQLQGFPFYGK 77
Query: 79 PMRIQYSKTDSDVISKIKGTFMERPKKVRKQPA 111
PMRIQY+KTDSD+ISK++GTF ++ KK K+ A
Sbjct: 78 PMRIQYAKTDSDIISKMRGTFADKEKKKEKKKA 110
Score = 346 (126.9 bits), Expect = 8.7e-67, Sum P(2) = 8.7e-67
Identities = 66/82 (80%), Positives = 74/82 (90%)
Query: 165 VPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAA 224
VP+ PPN ILFL NLPEET+EMMLSMLFNQFPGFKEVRLVP RHDIAFVEFEN+ Q+ AA
Sbjct: 137 VPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAA 196
Query: 225 KLALHGFKITPTHAMKISFAKK 246
+ AL GFKITP+HAMKI++AKK
Sbjct: 197 RDALQGFKITPSHAMKITYAKK 218
>UNIPROTKB|E2R2A8 [details] [associations]
symbol:SNRPB2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0017069 "snRNA binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0017069 GeneTree:ENSGT00390000007046 PANTHER:PTHR10501
KO:K11094 OMA:DIACATQ CTD:6629 EMBL:AAEX03013775
RefSeq:NP_001238897.1 UniGene:Cfa.10214 Ensembl:ENSCAFT00000039015
GeneID:477148 KEGG:cfa:477148 NextBio:20852679 Uniprot:E2R2A8
Length = 225
Score = 351 (128.6 bits), Expect = 8.7e-67, Sum P(2) = 8.7e-67
Identities = 65/93 (69%), Positives = 81/93 (87%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
I +LK+SLYA+FSQFG ++DIVALKT+KMRGQAFVIFKE+ S+TNALR +QGFPFY K
Sbjct: 18 IKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQLQGFPFYGK 77
Query: 79 PMRIQYSKTDSDVISKIKGTFMERPKKVRKQPA 111
PMRIQY+KTDSD+ISK++GTF ++ KK K+ A
Sbjct: 78 PMRIQYAKTDSDIISKMRGTFADKEKKKEKKKA 110
Score = 346 (126.9 bits), Expect = 8.7e-67, Sum P(2) = 8.7e-67
Identities = 66/82 (80%), Positives = 74/82 (90%)
Query: 165 VPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAA 224
VP+ PPN ILFL NLPEET+EMMLSMLFNQFPGFKEVRLVP RHDIAFVEFEN+ Q+ AA
Sbjct: 144 VPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAA 203
Query: 225 KLALHGFKITPTHAMKISFAKK 246
+ AL GFKITP+HAMKI++AKK
Sbjct: 204 RDALQGFKITPSHAMKITYAKK 225
>UNIPROTKB|P08579 [details] [associations]
symbol:SNRPB2 "U2 small nuclear ribonucleoprotein B''"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0017069 "snRNA binding" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;TAS] [GO:0005686 "U2 snRNP"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0005681 "spliceosomal complex" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005654
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 EMBL:CH471133
GO:GO:0000398 GO:GO:0071013 GO:GO:0017069 GO:GO:0005686
eggNOG:NOG317159 PANTHER:PTHR10501 EMBL:AL034428
HOGENOM:HOG000217519 PDB:1A9N PDBsum:1A9N KO:K11094 OMA:TTANKKP
EMBL:M15841 EMBL:AK313004 EMBL:BC018022 EMBL:BC036737
IPI:IPI00029267 PIR:A25910 RefSeq:NP_003083.1 RefSeq:NP_937863.1
UniGene:Hs.280378 ProteinModelPortal:P08579 SMR:P08579
IntAct:P08579 MINT:MINT-156501 STRING:P08579 PhosphoSite:P08579
DMDM:134095 PaxDb:P08579 PeptideAtlas:P08579 PRIDE:P08579
DNASU:6629 Ensembl:ENST00000246071 Ensembl:ENST00000377943
GeneID:6629 KEGG:hsa:6629 UCSC:uc002wph.2 CTD:6629
GeneCards:GC20P016658 HGNC:HGNC:11155 MIM:603520 neXtProt:NX_P08579
PharmGKB:PA35996 HOVERGEN:HBG000895 InParanoid:P08579
OrthoDB:EOG4H72CH PhylomeDB:P08579 EvolutionaryTrace:P08579
GenomeRNAi:6629 NextBio:25823 Bgee:P08579 CleanEx:HS_SNRPB2
Genevestigator:P08579 GermOnline:ENSG00000125870 Uniprot:P08579
Length = 225
Score = 351 (128.6 bits), Expect = 8.7e-67, Sum P(2) = 8.7e-67
Identities = 65/93 (69%), Positives = 81/93 (87%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
I +LK+SLYA+FSQFG ++DIVALKT+KMRGQAFVIFKE+ S+TNALR +QGFPFY K
Sbjct: 18 IKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQLQGFPFYGK 77
Query: 79 PMRIQYSKTDSDVISKIKGTFMERPKKVRKQPA 111
PMRIQY+KTDSD+ISK++GTF ++ KK K+ A
Sbjct: 78 PMRIQYAKTDSDIISKMRGTFADKEKKKEKKKA 110
Score = 346 (126.9 bits), Expect = 8.7e-67, Sum P(2) = 8.7e-67
Identities = 66/82 (80%), Positives = 74/82 (90%)
Query: 165 VPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAA 224
VP+ PPN ILFL NLPEET+EMMLSMLFNQFPGFKEVRLVP RHDIAFVEFEN+ Q+ AA
Sbjct: 144 VPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAA 203
Query: 225 KLALHGFKITPTHAMKISFAKK 246
+ AL GFKITP+HAMKI++AKK
Sbjct: 204 RDALQGFKITPSHAMKITYAKK 225
>MGI|MGI:104805 [details] [associations]
symbol:Snrpb2 "U2 small nuclear ribonucleoprotein B"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=ISO] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0017069 "snRNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:104805 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0000398 GO:GO:0071013 GO:GO:0017069 eggNOG:NOG317159
GeneTree:ENSGT00390000007046 PANTHER:PTHR10501 HOGENOM:HOG000217519
KO:K11094 OMA:TTANKKP CTD:6629 HOVERGEN:HBG000895 OrthoDB:EOG4H72CH
EMBL:AK005107 EMBL:AK011274 EMBL:AK012944 EMBL:AK013871
EMBL:BC026794 IPI:IPI00132576 RefSeq:NP_067310.1 UniGene:Mm.1323
ProteinModelPortal:Q9CQI7 SMR:Q9CQI7 STRING:Q9CQI7
PhosphoSite:Q9CQI7 PaxDb:Q9CQI7 PRIDE:Q9CQI7
Ensembl:ENSMUST00000008477 GeneID:20639 KEGG:mmu:20639
InParanoid:Q9CQI7 ChiTaRS:SNRPB2 NextBio:299043 Bgee:Q9CQI7
CleanEx:MM_SNRPB2 Genevestigator:Q9CQI7
GermOnline:ENSMUSG00000008333 Uniprot:Q9CQI7
Length = 225
Score = 351 (128.6 bits), Expect = 8.7e-67, Sum P(2) = 8.7e-67
Identities = 65/93 (69%), Positives = 81/93 (87%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
I +LK+SLYA+FSQFG ++DIVALKT+KMRGQAFVIFKE+ S+TNALR +QGFPFY K
Sbjct: 18 IKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQLQGFPFYGK 77
Query: 79 PMRIQYSKTDSDVISKIKGTFMERPKKVRKQPA 111
PMRIQY+KTDSD+ISK++GTF ++ KK K+ A
Sbjct: 78 PMRIQYAKTDSDIISKMRGTFADKEKKKEKKKA 110
Score = 346 (126.9 bits), Expect = 8.7e-67, Sum P(2) = 8.7e-67
Identities = 66/82 (80%), Positives = 74/82 (90%)
Query: 165 VPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAA 224
VP+ PPN ILFL NLPEET+EMMLSMLFNQFPGFKEVRLVP RHDIAFVEFEN+ Q+ AA
Sbjct: 144 VPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAA 203
Query: 225 KLALHGFKITPTHAMKISFAKK 246
+ AL GFKITP+HAMKI++AKK
Sbjct: 204 RDALQGFKITPSHAMKITYAKK 225
>RGD|1310194 [details] [associations]
symbol:Snrpb2 "small nuclear ribonucleoprotein polypeptide B''"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=ISO]
[GO:0017069 "snRNA binding" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IEA;ISO] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310194 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0000398 GO:GO:0071013 GO:GO:0017069 EMBL:CH474026
eggNOG:NOG317159 GeneTree:ENSGT00390000007046 PANTHER:PTHR10501
HOGENOM:HOG000217519 KO:K11094 OMA:DIACATQ CTD:6629
HOVERGEN:HBG000895 OrthoDB:EOG4H72CH EMBL:BC168760 IPI:IPI00213414
RefSeq:NP_001102062.1 UniGene:Rn.7712 STRING:B5DEQ4
Ensembl:ENSRNOT00000006900 GeneID:362223 KEGG:rno:362223
UCSC:RGD:1310194 NextBio:679082 Genevestigator:B5DEQ4
Uniprot:B5DEQ4
Length = 225
Score = 351 (128.6 bits), Expect = 8.7e-67, Sum P(2) = 8.7e-67
Identities = 65/93 (69%), Positives = 81/93 (87%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
I +LK+SLYA+FSQFG ++DIVALKT+KMRGQAFVIFKE+ S+TNALR +QGFPFY K
Sbjct: 18 IKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQLQGFPFYGK 77
Query: 79 PMRIQYSKTDSDVISKIKGTFMERPKKVRKQPA 111
PMRIQY+KTDSD+ISK++GTF ++ KK K+ A
Sbjct: 78 PMRIQYAKTDSDIISKMRGTFADKEKKKEKKKA 110
Score = 346 (126.9 bits), Expect = 8.7e-67, Sum P(2) = 8.7e-67
Identities = 66/82 (80%), Positives = 74/82 (90%)
Query: 165 VPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAA 224
VP+ PPN ILFL NLPEET+EMMLSMLFNQFPGFKEVRLVP RHDIAFVEFEN+ Q+ AA
Sbjct: 144 VPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAA 203
Query: 225 KLALHGFKITPTHAMKISFAKK 246
+ AL GFKITP+HAMKI++AKK
Sbjct: 204 RDALQGFKITPSHAMKITYAKK 225
>UNIPROTKB|J9NSX4 [details] [associations]
symbol:LOC100683259 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0017069 "snRNA binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0017069 GeneTree:ENSGT00390000007046 PANTHER:PTHR10501
OMA:TTANKKP EMBL:AAEX03017376 Ensembl:ENSCAFT00000021878
Uniprot:J9NSX4
Length = 230
Score = 348 (127.6 bits), Expect = 1.8e-66, Sum P(2) = 1.8e-66
Identities = 64/91 (70%), Positives = 80/91 (87%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
I +LK+SLYA+FSQFG ++DIVALKT+KMRGQAFVIFKE+ S+TNALR +QGFPFY K
Sbjct: 28 IKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQLQGFPFYGK 87
Query: 79 PMRIQYSKTDSDVISKIKGTFMERPKKVRKQ 109
PMRIQY+KTDSD+ISK++GTF ++ KK K+
Sbjct: 88 PMRIQYAKTDSDIISKMRGTFADKEKKKEKK 118
Score = 346 (126.9 bits), Expect = 1.8e-66, Sum P(2) = 1.8e-66
Identities = 66/82 (80%), Positives = 74/82 (90%)
Query: 165 VPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAA 224
VP+ PPN ILFL NLPEET+EMMLSMLFNQFPGFKEVRLVP RHDIAFVEFEN+ Q+ AA
Sbjct: 149 VPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAA 208
Query: 225 KLALHGFKITPTHAMKISFAKK 246
+ AL GFKITP+HAMKI++AKK
Sbjct: 209 RDALQGFKITPSHAMKITYAKK 230
>ZFIN|ZDB-GENE-060616-2 [details] [associations]
symbol:snrpb2 "small nuclear ribonucleoprotein
polypeptide B2" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0017069 "snRNA binding" evidence=IEA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-060616-2 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0000398 GO:GO:0017069 eggNOG:NOG317159
GeneTree:ENSGT00390000007046 PANTHER:PTHR10501 HSSP:P08579
HOGENOM:HOG000217519 OMA:TTANKKP HOVERGEN:HBG000895
OrthoDB:EOG4H72CH EMBL:CU464066 EMBL:BC059527 IPI:IPI00486390
UniGene:Dr.14007 STRING:Q6PBZ6 Ensembl:ENSDART00000057601
InParanoid:Q6PBZ6 Uniprot:Q6PBZ6
Length = 229
Score = 354 (129.7 bits), Expect = 3.3e-65, Sum P(2) = 3.3e-65
Identities = 65/113 (57%), Positives = 95/113 (84%)
Query: 1 MNIILAHICVTNFVYVTHISST----DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVI 56
+++++ I + +Y+ +++ +LK+SLYA+FSQFGQIMDIVALKT++MRGQAFVI
Sbjct: 5 LSLLIMDIRPNHTIYINNVNDKIKKEELKRSLYALFSQFGQIMDIVALKTMRMRGQAFVI 64
Query: 57 FKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQ 109
FKE+++ATNALR +QGFPFY+KPMRIQY+KTDSD++SK++GT+ ++ KK K+
Sbjct: 65 FKELSAATNALRQLQGFPFYNKPMRIQYAKTDSDLVSKMRGTYGDKEKKKEKK 117
Score = 328 (120.5 bits), Expect = 3.3e-65, Sum P(2) = 3.3e-65
Identities = 63/86 (73%), Positives = 73/86 (84%)
Query: 161 ATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQ 220
AT +P+ PPN ILFL NLPEET+EMMLSMLFNQFPGFKEVRLVP +HDI+FVEFE+E Q
Sbjct: 144 ATVQIPDNPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGKHDISFVEFESEAQ 203
Query: 221 SAAAKLALHGFKITPTHAMKISFAKK 246
+ AK AL GF+IT T AMKI++AKK
Sbjct: 204 AGVAKDALQGFRITATCAMKITYAKK 229
>TAIR|locus:2007417 [details] [associations]
symbol:AT1G06960 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005686 "U2 snRNP"
evidence=IDA] [GO:0015030 "Cajal body" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0015030 GO:GO:0000398
GO:GO:0017069 GO:GO:0005686 EMBL:AC067971 eggNOG:NOG317159
PANTHER:PTHR10501 HSSP:P08579 HOGENOM:HOG000217519
ProtClustDB:CLSN2683617 EMBL:AY080742 EMBL:AY142487 IPI:IPI00542329
IPI:IPI00548592 IPI:IPI00846257 PIR:C86204 RefSeq:NP_001077472.1
RefSeq:NP_172177.3 RefSeq:NP_850936.1 UniGene:At.42321
ProteinModelPortal:Q8H1S6 SMR:Q8H1S6 STRING:Q8H1S6
EnsemblPlants:AT1G06960.1 GeneID:837206 KEGG:ath:AT1G06960
GeneFarm:4538 TAIR:At1g06960 InParanoid:Q8H1S6 OMA:DIACATQ
PhylomeDB:Q8H1S6 Genevestigator:Q8H1S6 Uniprot:Q8H1S6
Length = 229
Score = 307 (113.1 bits), Expect = 6.1e-52, Sum P(2) = 6.1e-52
Identities = 59/116 (50%), Positives = 87/116 (75%)
Query: 3 IILAHICVTNFVYVTHISST----DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFK 58
++ A I +Y+ HI+ +LK+SLY +FSQFG+++D+VALKT K+RGQA+V+F
Sbjct: 1 MLTADIPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFT 60
Query: 59 EIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVE 114
E+ +A+NA+R MQ FPFYDKPMRIQY+K+ SD ++K +G+F+ + KK+ KQ VE
Sbjct: 61 EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKM-KQEEKVE 115
Score = 249 (92.7 bits), Expect = 6.1e-52, Sum P(2) = 6.1e-52
Identities = 47/84 (55%), Positives = 63/84 (75%)
Query: 163 AGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSA 222
+G PPN ILF+ NLP ET+ MML +LF Q+PGFKE+R++ + IAFVE+E+++QS+
Sbjct: 146 SGQDTMPPNNILFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSS 205
Query: 223 AAKLALHGFKITPTHAMKISFAKK 246
A AL GFKITP + M +SFAKK
Sbjct: 206 MAMQALQGFKITPQNPMVVSFAKK 229
>TAIR|locus:2065742 [details] [associations]
symbol:U2B'' "U2 small nuclear ribonucleoprotein B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0000354 "cis assembly of pre-catalytic
spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0015030 "Cajal body"
evidence=IDA] [GO:0005686 "U2 snRNP" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0015030 EMBL:AC002338
GO:GO:0017069 GO:GO:0005686 GO:GO:0000354 eggNOG:NOG317159
PANTHER:PTHR10501 HSSP:P08579 HOGENOM:HOG000217519
ProtClustDB:CLSN2683617 EMBL:BT003068 EMBL:AK227609 EMBL:AY087401
IPI:IPI00546965 PIR:C84706 RefSeq:NP_180585.1 UniGene:At.19782
ProteinModelPortal:O22922 SMR:O22922 IntAct:O22922 STRING:O22922
PaxDb:O22922 PRIDE:O22922 EnsemblPlants:AT2G30260.1 GeneID:817576
KEGG:ath:AT2G30260 GeneFarm:4539 TAIR:At2g30260 InParanoid:O22922
KO:K11094 OMA:TTANKKP PhylomeDB:O22922 Genevestigator:O22922
Uniprot:O22922
Length = 232
Score = 294 (108.6 bits), Expect = 2.9e-50, Sum P(2) = 2.9e-50
Identities = 56/96 (58%), Positives = 75/96 (78%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
I +LK+SLY +FSQFG+I+D+VALKT K+RGQA+V F E+ +A +A+R MQ FPFYDK
Sbjct: 21 IKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFSEVTAAGHAVRQMQNFPFYDK 80
Query: 79 PMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVE 114
PMR+QY+K SD ++K +GTF+ + KK RKQ VE
Sbjct: 81 PMRLQYAKAKSDCLAKAEGTFVPKDKK-RKQEEKVE 115
Score = 246 (91.7 bits), Expect = 2.9e-50, Sum P(2) = 2.9e-50
Identities = 46/84 (54%), Positives = 62/84 (73%)
Query: 163 AGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSA 222
+G PPN ILF+ NLP ET+ MML +LF Q+PGFKE+R++ + IAFVE+E+++Q++
Sbjct: 149 SGQETMPPNNILFIQNLPHETTSMMLQLLFEQYPGFKEIRMIDAKPGIAFVEYEDDVQAS 208
Query: 223 AAKLALHGFKITPTHAMKISFAKK 246
A L GFKITP + M ISFAKK
Sbjct: 209 IAMQPLQGFKITPQNPMVISFAKK 232
>UNIPROTKB|A2Y0J7 [details] [associations]
symbol:OsI_18512 "U1 small nuclear ribonucleoprotein A"
species:39946 "Oryza sativa Indica Group" [GO:0005685 "U1 snRNP"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0000398 EMBL:CM000130 GO:GO:0017069
GO:GO:0005685 eggNOG:NOG317159 PANTHER:PTHR10501
HOGENOM:HOG000217519 ProteinModelPortal:A2Y0J7 STRING:A2Y0J7
Gramene:A2Y0J7 Uniprot:A2Y0J7
Length = 253
Score = 296 (109.3 bits), Expect = 1.2e-47, Sum P(2) = 1.2e-47
Identities = 55/94 (58%), Positives = 76/94 (80%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
I +LKKSL A+FSQFG+I+D++A KTLK +GQA+V+F+++ASAT AL+SMQ FPF++K
Sbjct: 34 IKLEELKKSLRAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALKSMQDFPFHNK 93
Query: 79 PMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAP 112
PMRIQY+KT SD+I+K GTF+ R ++ R P
Sbjct: 94 PMRIQYAKTKSDIIAKADGTFVPRERRKRNDEKP 127
Score = 219 (82.2 bits), Expect = 1.2e-47, Sum P(2) = 1.2e-47
Identities = 46/77 (59%), Positives = 56/77 (72%)
Query: 170 PNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALH 229
PN ILF+ NLP ET+ MML MLF Q+PGFKEVR+V + IAFVE+ +E Q+ AA L
Sbjct: 177 PNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEGQATAAMNHLQ 236
Query: 230 GFKITPTHAMKISFAKK 246
GFKIT + M IS+AKK
Sbjct: 237 GFKITKDNQMLISYAKK 253
>UNIPROTKB|Q0DKM4 [details] [associations]
symbol:LOC_Os05g06280 "U1 small nuclear ribonucleoprotein
A" species:39947 "Oryza sativa Japonica Group" [GO:0005685 "U1
snRNP" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
GO:GO:0005681 EMBL:AP008211 EMBL:CM000142 GO:GO:0000398
GO:GO:0017069 GO:GO:0005685 PANTHER:PTHR10501 KO:K11091
ProtClustDB:CLSN2683617 RefSeq:NP_001054685.1 UniGene:Os.9766
ProteinModelPortal:Q0DKM4 GeneID:4337846 KEGG:osa:4337846
Gramene:Q0DKM4 Uniprot:Q0DKM4
Length = 253
Score = 296 (109.3 bits), Expect = 1.2e-47, Sum P(2) = 1.2e-47
Identities = 55/94 (58%), Positives = 76/94 (80%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
I +LKKSL A+FSQFG+I+D++A KTLK +GQA+V+F+++ASAT AL+SMQ FPF++K
Sbjct: 34 IKLEELKKSLRAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALKSMQDFPFHNK 93
Query: 79 PMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAP 112
PMRIQY+KT SD+I+K GTF+ R ++ R P
Sbjct: 94 PMRIQYAKTKSDIIAKADGTFVPRERRKRNDEKP 127
Score = 219 (82.2 bits), Expect = 1.2e-47, Sum P(2) = 1.2e-47
Identities = 46/77 (59%), Positives = 56/77 (72%)
Query: 170 PNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALH 229
PN ILF+ NLP ET+ MML MLF Q+PGFKEVR+V + IAFVE+ +E Q+ AA L
Sbjct: 177 PNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEGQATAAMNHLQ 236
Query: 230 GFKITPTHAMKISFAKK 246
GFKIT + M IS+AKK
Sbjct: 237 GFKITKDNQMLISYAKK 253
>WB|WBGene00004386 [details] [associations]
symbol:rnp-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] [GO:0017069 "snRNA
binding" evidence=IEA] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0040007
GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0017069 eggNOG:NOG317159 GeneTree:ENSGT00390000007046
PANTHER:PTHR10501 HSSP:P09012 HOGENOM:HOG000217519 OMA:TTANKKP
EMBL:FO081596 PIR:T29388 RefSeq:NP_500505.1
ProteinModelPortal:Q21323 SMR:Q21323 IntAct:Q21323 STRING:Q21323
PaxDb:Q21323 EnsemblMetazoa:K08D10.3 GeneID:177182
KEGG:cel:CELE_K08D10.3 UCSC:K08D10.3 CTD:177182 WormBase:K08D10.3
InParanoid:Q21323 NextBio:895688 Uniprot:Q21323
Length = 217
Score = 295 (108.9 bits), Expect = 2.0e-45, Sum P(2) = 2.0e-45
Identities = 57/117 (48%), Positives = 87/117 (74%)
Query: 5 LAHICVTNFVYVTHISST----DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEI 60
+A I + +YV +++ +LK+SL+ +F+QFG+I+ +++ + KMRGQA ++FKE+
Sbjct: 1 MADINPNHTIYVNNLNEKVKKDELKRSLHMVFTQFGEIIQLMSFRKEKMRGQAHIVFKEV 60
Query: 61 ASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRK-QPAPVEDP 116
+SA+NALR++QGFPFY KPMRIQY++ DSDVIS+ KGTF+E+ +K K P E P
Sbjct: 61 SSASNALRALQGFPFYGKPMRIQYAREDSDVISRAKGTFVEKRQKSTKIAKKPYEKP 117
Score = 199 (75.1 bits), Expect = 2.0e-45, Sum P(2) = 2.0e-45
Identities = 37/77 (48%), Positives = 51/77 (66%)
Query: 170 PNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALH 229
PN ILF +N+PE T + +F+QFPG +EVR +PN D AF+E+E+E S A+ AL
Sbjct: 141 PNNILFCSNIPEGTEPEQIQTIFSQFPGLREVRWMPNTKDFAFIEYESEDLSEPARQALD 200
Query: 230 GFKITPTHAMKISFAKK 246
F+ITPT + + FA K
Sbjct: 201 NFRITPTQQITVKFASK 217
>UNIPROTKB|Q21323 [details] [associations]
symbol:rnp-3 "Protein RNP-3" species:6239 "Caenorhabditis
elegans" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0040007
GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0017069 eggNOG:NOG317159 GeneTree:ENSGT00390000007046
PANTHER:PTHR10501 HSSP:P09012 HOGENOM:HOG000217519 OMA:TTANKKP
EMBL:FO081596 PIR:T29388 RefSeq:NP_500505.1
ProteinModelPortal:Q21323 SMR:Q21323 IntAct:Q21323 STRING:Q21323
PaxDb:Q21323 EnsemblMetazoa:K08D10.3 GeneID:177182
KEGG:cel:CELE_K08D10.3 UCSC:K08D10.3 CTD:177182 WormBase:K08D10.3
InParanoid:Q21323 NextBio:895688 Uniprot:Q21323
Length = 217
Score = 295 (108.9 bits), Expect = 2.0e-45, Sum P(2) = 2.0e-45
Identities = 57/117 (48%), Positives = 87/117 (74%)
Query: 5 LAHICVTNFVYVTHISST----DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEI 60
+A I + +YV +++ +LK+SL+ +F+QFG+I+ +++ + KMRGQA ++FKE+
Sbjct: 1 MADINPNHTIYVNNLNEKVKKDELKRSLHMVFTQFGEIIQLMSFRKEKMRGQAHIVFKEV 60
Query: 61 ASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRK-QPAPVEDP 116
+SA+NALR++QGFPFY KPMRIQY++ DSDVIS+ KGTF+E+ +K K P E P
Sbjct: 61 SSASNALRALQGFPFYGKPMRIQYAREDSDVISRAKGTFVEKRQKSTKIAKKPYEKP 117
Score = 199 (75.1 bits), Expect = 2.0e-45, Sum P(2) = 2.0e-45
Identities = 37/77 (48%), Positives = 51/77 (66%)
Query: 170 PNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALH 229
PN ILF +N+PE T + +F+QFPG +EVR +PN D AF+E+E+E S A+ AL
Sbjct: 141 PNNILFCSNIPEGTEPEQIQTIFSQFPGLREVRWMPNTKDFAFIEYESEDLSEPARQALD 200
Query: 230 GFKITPTHAMKISFAKK 246
F+ITPT + + FA K
Sbjct: 201 NFRITPTQQITVKFASK 217
>UNIPROTKB|B8AM21 [details] [associations]
symbol:OsI_11177 "U2 small nuclear ribonucleoprotein B''"
species:39946 "Oryza sativa Indica Group" [GO:0005654 "nucleoplasm"
evidence=ISS] [GO:0005686 "U2 snRNP" evidence=ISS] [GO:0015030
"Cajal body" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0015030
GO:GO:0000398 GO:GO:0017069 GO:GO:0005686 EMBL:CM000128
eggNOG:NOG317159 PANTHER:PTHR10501 HOGENOM:HOG000217519
ProteinModelPortal:B8AM21 STRING:B8AM21 Gramene:B8AM21
Uniprot:B8AM21
Length = 232
Score = 248 (92.4 bits), Expect = 2.6e-45, Sum P(2) = 2.6e-45
Identities = 48/85 (56%), Positives = 62/85 (72%)
Query: 162 TAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQS 221
T+ P PPN ILF+ NLP ET+ MML +LF Q+PGF+EVR++ + IAFVE+E++ QS
Sbjct: 148 TSQEPPAPPNNILFIQNLPAETTSMMLQILFQQYPGFREVRMIEAKPGIAFVEYEDDSQS 207
Query: 222 AAAKLALHGFKITPTHAMKISFAKK 246
A AL GFKITP + M IS+AKK
Sbjct: 208 MVAMQALQGFKITPYNPMAISYAKK 232
Score = 245 (91.3 bits), Expect = 2.6e-45, Sum P(2) = 2.6e-45
Identities = 48/91 (52%), Positives = 68/91 (74%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
+ +LK+SLYA+ SQ+G+I+D+VALKT K+RGQA+V+F EI +ATNA R +Q F FY K
Sbjct: 21 VKKEELKRSLYALCSQYGRILDVVALKTPKLRGQAWVVFSEITAATNAFRGLQEFDFYGK 80
Query: 79 PMRIQYSKTDSDVISKIKGTFMERPKKVRKQ 109
MR+QY+KT SD ++ G+ PK+ RK+
Sbjct: 81 RMRVQYAKTKSDCLATEDGS--TAPKEKRKK 109
>UNIPROTKB|Q10MR0 [details] [associations]
symbol:LOC_Os03g18720 "U2 small nuclear ribonucleoprotein
B''" species:39947 "Oryza sativa Japonica Group" [GO:0005654
"nucleoplasm" evidence=ISS] [GO:0005686 "U2 snRNP" evidence=ISS]
[GO:0015030 "Cajal body" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681
EMBL:DP000009 EMBL:AP008209 GO:GO:0015030 GO:GO:0000398
EMBL:CM000140 GO:GO:0017069 GO:GO:0005686 eggNOG:NOG317159
PANTHER:PTHR10501 HOGENOM:HOG000217519 ProtClustDB:CLSN2683617
KO:K11094 OMA:DIACATQ EMBL:AK103337 RefSeq:NP_001049846.1
UniGene:Os.75636 ProteinModelPortal:Q10MR0 STRING:Q10MR0
PRIDE:Q10MR0 EnsemblPlants:LOC_Os03g18720.1 GeneID:4332557
KEGG:dosa:Os03t0298800-01 KEGG:osa:4332557 Gramene:Q10MR0
Uniprot:Q10MR0
Length = 232
Score = 248 (92.4 bits), Expect = 3.3e-45, Sum P(2) = 3.3e-45
Identities = 48/85 (56%), Positives = 62/85 (72%)
Query: 162 TAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQS 221
T+ P PPN ILF+ NLP ET+ MML +LF Q+PGF+EVR++ + IAFVE+E++ QS
Sbjct: 148 TSQEPPAPPNNILFIQNLPAETTSMMLQILFQQYPGFREVRMIEAKPGIAFVEYEDDSQS 207
Query: 222 AAAKLALHGFKITPTHAMKISFAKK 246
A AL GFKITP + M IS+AKK
Sbjct: 208 MVAMQALQGFKITPYNPMAISYAKK 232
Score = 244 (91.0 bits), Expect = 3.3e-45, Sum P(2) = 3.3e-45
Identities = 48/91 (52%), Positives = 68/91 (74%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
+ +LK+SLYA+ SQ+G+I+D+VALKT K+RGQA+V+F EI +ATNA R +Q F FY K
Sbjct: 21 VKKEELKRSLYALCSQYGRILDVVALKTPKLRGQAWVVFSEITAATNAFRGLQEFDFYGK 80
Query: 79 PMRIQYSKTDSDVISKIKGTFMERPKKVRKQ 109
MR+QY+KT SD ++ G+ PK+ RK+
Sbjct: 81 RMRVQYAKTRSDCLATEDGS--TAPKEKRKK 109
>WB|WBGene00004385 [details] [associations]
symbol:rnp-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] [GO:0017069 "snRNA
binding" evidence=IEA] [GO:0016246 "RNA interference" evidence=IMP]
[GO:0042127 "regulation of cell proliferation" evidence=IMP]
[GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0007281 "germ cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0009792
GO:GO:0016246 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0042127
GO:GO:0007281 GO:GO:0000398 GO:GO:0040020 GO:GO:0017069
eggNOG:NOG317159 GeneTree:ENSGT00390000007046 PANTHER:PTHR10501
HSSP:P09012 HOGENOM:HOG000217519 OMA:ATNAMRT EMBL:FO081596
PIR:T29387 RefSeq:NP_500504.1 ProteinModelPortal:Q21322 SMR:Q21322
STRING:Q21322 PaxDb:Q21322 EnsemblMetazoa:K08D10.4 GeneID:177181
KEGG:cel:CELE_K08D10.4 UCSC:K08D10.4 CTD:177181 WormBase:K08D10.4
InParanoid:Q21322 NextBio:895684 Uniprot:Q21322
Length = 206
Score = 265 (98.3 bits), Expect = 1.8e-44, Sum P(2) = 1.8e-44
Identities = 51/115 (44%), Positives = 84/115 (73%)
Query: 5 LAHICVTNFVYVTHISST----DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEI 60
+A + + +Y+ +++ +L+KSL A+F QFG+I+ ++ +TLKMRGQA VIFKE+
Sbjct: 1 MAEVAPNSTLYINNLNEKIKIDELRKSLVAVFKQFGEIVSVMCFRTLKMRGQAHVIFKEL 60
Query: 61 ASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMER-PK----KVRKQP 110
+A+ A ++ GFPFY+KPMRIQ+++ DSDV+++ KGT+++R PK K+ K+P
Sbjct: 61 PAASAAREALNGFPFYEKPMRIQFAREDSDVVAQEKGTYIKREPKYLSEKILKKP 115
Score = 220 (82.5 bits), Expect = 1.8e-44, Sum P(2) = 1.8e-44
Identities = 39/78 (50%), Positives = 56/78 (71%)
Query: 169 PPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLAL 228
PPN+ILF TNLP+ + ML ++FNQF G K++R+VPNR IAFVEF+ + + A+ L
Sbjct: 129 PPNKILFCTNLPDSATAEMLEIMFNQFAGLKDIRMVPNRPGIAFVEFDTDSLAIPARTTL 188
Query: 229 HGFKITPTHAMKISFAKK 246
+ FKI+ H M++ +AKK
Sbjct: 189 NNFKISAEHTMRVDYAKK 206
>DICTYBASE|DDB_G0288391 [details] [associations]
symbol:snrpB2 "U2 small nuclear ribonucleoprotein B"
species:44689 "Dictyostelium discoideum" [GO:0017069 "snRNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0288391 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GenomeReviews:CM000154_GR EMBL:AAFI02000111
GO:GO:0000398 GO:GO:0017069 eggNOG:NOG317159 PANTHER:PTHR10501
HSSP:P09012 KO:K11094 RefSeq:XP_636725.1 ProteinModelPortal:Q54J05
STRING:Q54J05 EnsemblProtists:DDB0233135 GeneID:8626602
KEGG:ddi:DDB_G0288391 OMA:IFGQFPG ProtClustDB:CLSZ2429888
Uniprot:Q54J05
Length = 241
Score = 257 (95.5 bits), Expect = 4.1e-43, Sum P(2) = 4.1e-43
Identities = 49/91 (53%), Positives = 70/91 (76%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
IS L + L +FS++G I++IV K+LKMRGQAF++FK+I SA+NALR M GF F D+
Sbjct: 23 ISKKKLIEQLLLLFSKYGPILEIVGSKSLKMRGQAFIVFKDITSASNALREMNGFNFLDR 82
Query: 79 PMRIQYSKTDSDVISKIKGTFMERPKKVRKQ 109
PM+IQY K+ SD +SK+ GT+ME+ K+ R++
Sbjct: 83 PMKIQYCKSKSDAVSKLDGTYMEK-KREREE 112
Score = 215 (80.7 bits), Expect = 4.1e-43, Sum P(2) = 4.1e-43
Identities = 41/78 (52%), Positives = 56/78 (71%)
Query: 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKL 226
+ PPN+ LF+ NLP++ MMLSMLF+QF GFKEV +V ++ IAF+EFE+E++S A
Sbjct: 162 DDPPNKTLFVENLPDKCDSMMLSMLFSQFQGFKEVHMVESKKGIAFIEFEDEIKSGFAMT 221
Query: 227 ALHGFKITPTHAMKISFA 244
L FK+TP M +SFA
Sbjct: 222 NLQHFKVTPEKPMVVSFA 239
>TAIR|locus:2061976 [details] [associations]
symbol:U1A "spliceosomal protein U1A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0009651 "response to salt stress"
evidence=IGI] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005685 "U1
snRNP" evidence=ISS;IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005829
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0005730 GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0000398
EMBL:AC002535 GO:GO:0017069 GO:GO:0005685 eggNOG:NOG317159
PANTHER:PTHR10501 HSSP:P09012 EMBL:Z49991 EMBL:AY052663
EMBL:AY059875 EMBL:AY093341 EMBL:AY142070 IPI:IPI00542976
PIR:S59118 RefSeq:NP_182280.1 UniGene:At.200
ProteinModelPortal:Q39244 SMR:Q39244 IntAct:Q39244 STRING:Q39244
PaxDb:Q39244 PRIDE:Q39244 EnsemblPlants:AT2G47580.1 GeneID:819371
KEGG:ath:AT2G47580 GeneFarm:4533 TAIR:At2g47580
HOGENOM:HOG000217519 InParanoid:Q39244 KO:K11091 OMA:ATNAMRT
PhylomeDB:Q39244 ProtClustDB:CLSN2683617 Genevestigator:Q39244
Uniprot:Q39244
Length = 250
Score = 260 (96.6 bits), Expect = 5.2e-43, Sum P(2) = 5.2e-43
Identities = 50/100 (50%), Positives = 72/100 (72%)
Query: 14 VYVTHISST----DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ +++ +LKKSL A+FSQFG+I++I+A KT K +GQA+V+F SA+ A+
Sbjct: 20 IYINNLNEKVKLDELKKSLNAVFSQFGKILEILAFKTFKHKGQAWVVFDNTESASTAIAK 79
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQ 109
M FPFYDK MRIQY+KT SDV++K GTF+ R K+ R +
Sbjct: 80 MNNFPFYDKEMRIQYAKTKSDVVAKADGTFVPREKRKRHE 119
Score = 211 (79.3 bits), Expect = 5.2e-43, Sum P(2) = 5.2e-43
Identities = 46/84 (54%), Positives = 57/84 (67%)
Query: 165 VPEQP--PNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSA 222
+PE P PN ILF+ NLP ET+ M+L MLF Q+ GFKEVR++ + IAFVEF +EMQS
Sbjct: 168 MPEAPAPPNNILFVQNLPHETTPMVLQMLFCQYQGFKEVRMIEAKPGIAFVEFADEMQST 227
Query: 223 AAKLALHGFKITPTHAMKISFAKK 246
A L GFKI M I++AKK
Sbjct: 228 VAMQGLQGFKIQQNQ-MLITYAKK 250
>POMBASE|SPBC4B4.07c [details] [associations]
symbol:usp102 "U1 snRNP-associated protein Usp102"
species:4896 "Schizosaccharomyces pombe" [GO:0000395 "mRNA
5'-splice site recognition" evidence=IC] [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0005685 "U1 snRNP"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0017069
"snRNA binding" evidence=IEA] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPBC4B4.07c GO:GO:0005730 GO:GO:0000166 EMBL:CU329671
Gene3D:3.30.70.330 GenomeReviews:CU329671_GR GO:GO:0005681
GO:GO:0003723 GO:GO:0017069 GO:GO:0005685 GO:GO:0000395
eggNOG:NOG317159 PANTHER:PTHR10501 HSSP:P08579 HOGENOM:HOG000217519
PIR:T40479 RefSeq:NP_596424.1 ProteinModelPortal:O74968
STRING:O74968 EnsemblFungi:SPBC4B4.07c.1 GeneID:2540865
KEGG:spo:SPBC4B4.07c OMA:SFVEFEN OrthoDB:EOG4TB7MX NextBio:20801981
Uniprot:O74968
Length = 249
Score = 210 (79.0 bits), Expect = 9.0e-34, Sum P(2) = 9.0e-34
Identities = 43/91 (47%), Positives = 63/91 (69%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
I T LK+ L +F +G+++D+ A KTL+MRGQAFV+F + +A+ AL+ +QG+P Y K
Sbjct: 37 IRLTMLKRILEHLFGSYGKVIDVQARKTLRMRGQAFVVFDNLENASRALKDLQGYPLYGK 96
Query: 79 PMRIQYSKTDSDVISKIKGTF-MERPKKVRK 108
PM IQYSK+ SD+I + + +E KK RK
Sbjct: 97 PMMIQYSKSKSDIIVQRESPEEIETRKKDRK 127
Score = 173 (66.0 bits), Expect = 9.0e-34, Sum P(2) = 9.0e-34
Identities = 31/78 (39%), Positives = 53/78 (67%)
Query: 169 PPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLAL 228
PPN++L L N+P+E + +L+ +F F GF+EVR+VP R IAFVE++++ ++ AK
Sbjct: 171 PPNKVLLLQNIPQEVNADVLTQIFEAFSGFQEVRMVPGRRGIAFVEYDSDREATVAKNGT 230
Query: 229 HGFKITPTHAMKISFAKK 246
G ++ +K++FA+K
Sbjct: 231 TGMSLSGNQ-IKVTFARK 247
>UNIPROTKB|F1PFC6 [details] [associations]
symbol:SNRPA "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0017069 "snRNA binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR012677 InterPro:IPR024888
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0000398
GO:GO:0017069 GeneTree:ENSGT00390000007046 PANTHER:PTHR10501
EMBL:AAEX03000940 Ensembl:ENSCAFT00000008192 OMA:QAPRIMY
Uniprot:F1PFC6
Length = 177
Score = 242 (90.2 bits), Expect = 2.6e-32, Sum P(2) = 2.6e-32
Identities = 49/69 (71%), Positives = 58/69 (84%)
Query: 49 MRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRK 108
MRGQAFVIFKE++SATNALRSMQGFPFYDKPM Y+KTDSD+I+K+KGTF+ER +K K
Sbjct: 1 MRGQAFVIFKEVSSATNALRSMQGFPFYDKPM---YAKTDSDIIAKMKGTFVERDRKREK 57
Query: 109 Q-PAPVEDP 116
+ P E P
Sbjct: 58 RKPKSQETP 66
Score = 127 (49.8 bits), Expect = 2.6e-32, Sum P(2) = 2.6e-32
Identities = 24/28 (85%), Positives = 26/28 (92%)
Query: 167 EQPPNQILFLTNLPEETSEMMLSMLFNQ 194
E PPN ILFLTNLPEET+E+MLSMLFNQ
Sbjct: 150 ENPPNHILFLTNLPEETNELMLSMLFNQ 177
>ASPGD|ASPL0000053720 [details] [associations]
symbol:AN0109 species:162425 "Emericella nidulans"
[GO:0005685 "U1 snRNP" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017069 "snRNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330
GO:GO:0030529 GO:GO:0000398 EMBL:AACD01000004 GO:GO:0017069
eggNOG:NOG317159 PANTHER:PTHR10501 HOGENOM:HOG000217519 OMA:ATNAMRT
OrthoDB:EOG4TB7MX RefSeq:XP_657713.1 ProteinModelPortal:Q5BH71
STRING:Q5BH71 EnsemblFungi:CADANIAT00002640 GeneID:2875883
KEGG:ani:AN0109.2 Uniprot:Q5BH71
Length = 252
Score = 185 (70.2 bits), Expect = 1.1e-31, Sum P(2) = 1.1e-31
Identities = 39/96 (40%), Positives = 59/96 (61%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
I LK++L IFS++G I++IVA + LK +GQAF++F + SAT A+ + GF +DK
Sbjct: 25 IKLDQLKEALSEIFSEYGTILEIVAKRNLKAKGQAFIVFDNVDSATRAIDEVNGFDLFDK 84
Query: 79 PMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVE 114
PM + Y+KT SD + +G E R++ A E
Sbjct: 85 PMVLDYAKTRSDATVRREGGDEELEAHKRRRLAEKE 120
Score = 178 (67.7 bits), Expect = 1.1e-31, Sum P(2) = 1.1e-31
Identities = 37/77 (48%), Positives = 51/77 (66%)
Query: 161 ATAGVPEQ--PPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENE 218
A A +P++ PPN+ILFL LP+ + L+ +F +F GF+EVRLVP R IAFVE+ENE
Sbjct: 164 AAAVIPDEYLPPNKILFLRELPDTADQGSLTAVFGRFEGFREVRLVPGRKGIAFVEYENE 223
Query: 219 MQSAAAKLALHGFKITP 235
+ +AK A G + P
Sbjct: 224 SGAISAKEATSGMPMGP 240
>UNIPROTKB|J9NXJ9 [details] [associations]
symbol:SNRPA "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0017069 "snRNA binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0017069 GeneTree:ENSGT00390000007046 PANTHER:PTHR10501
EMBL:AAEX03005528 Ensembl:ENSCAFT00000048760 Uniprot:J9NXJ9
Length = 165
Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
Identities = 66/112 (58%), Positives = 86/112 (76%)
Query: 1 MNIILAHICVTNFVYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVI 56
+++ + C + +Y+ I +LKKSLYAIFSQFGQI+ I+ ++LKMRGQAFVI
Sbjct: 18 LSMAVPETCPNHTIYINSLNEKIKKDELKKSLYAIFSQFGQILHILVSRSLKMRGQAFVI 77
Query: 57 FKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRK 108
FKE++ ATNALRSMQGFPFYDKPM IQY+KTDSD+I+K+KGTF+ R R+
Sbjct: 78 FKEVSRATNALRSMQGFPFYDKPMSIQYAKTDSDIIAKMKGTFVSRTASGRR 129
>UNIPROTKB|G4MSP6 [details] [associations]
symbol:MGG_07085 "Small nuclear ribonucleoprotein U1a"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0000398
EMBL:CM001232 GO:GO:0017069 PANTHER:PTHR10501 RefSeq:XP_003715274.1
ProteinModelPortal:G4MSP6 EnsemblFungi:MGG_07085T0 GeneID:2682970
KEGG:mgr:MGG_07085 Uniprot:G4MSP6
Length = 234
Score = 182 (69.1 bits), Expect = 2.3e-29, Sum P(2) = 2.3e-29
Identities = 37/91 (40%), Positives = 58/91 (63%)
Query: 24 LKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQ 83
LK++L IFS++G I+DIVA LK +GQAFV+F + ASA A+ +QGF +DKP+ +
Sbjct: 23 LKETLTTIFSEYGNIIDIVAKTNLKAKGQAFVVFDDPASAQRAIEEVQGFEIFDKPIHLA 82
Query: 84 YSKTDSDVISKIKGTFMERPKKVRKQPAPVE 114
++T SD K G+ + R++ A ++
Sbjct: 83 LARTRSDATVKANGSEEDLEAHKRRRVAEMD 113
Score = 159 (61.0 bits), Expect = 2.3e-29, Sum P(2) = 2.3e-29
Identities = 33/67 (49%), Positives = 46/67 (68%)
Query: 161 ATAGVPEQ--PPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENE 218
A VP++ PPN+ILF+ +LPE+ L+ +F +F GF+EVRLVP R IAFVE++ E
Sbjct: 146 AAPTVPDEYLPPNKILFVQHLPEDFDVEKLTTVFGRFDGFREVRLVPGRRGIAFVEYDGE 205
Query: 219 MQSAAAK 225
+ AAK
Sbjct: 206 AGAIAAK 212
>GENEDB_PFALCIPARUM|MAL13P1.35 [details] [associations]
symbol:MAL13P1.35 "u1 small nuclear
ribonucleoprotein a, putative" species:5833 "Plasmodium falciparum"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0030529
GO:GO:0000398 GO:GO:0017069 EMBL:AL844509 PANTHER:PTHR10501
RefSeq:XP_002809001.1 ProteinModelPortal:C0H5A4
EnsemblProtists:MAL13P1.35:mRNA GeneID:813918 KEGG:pfa:MAL13P1.35
EuPathDB:PlasmoDB:PF3D7_1306900 ProtClustDB:CLSZ2433056
Uniprot:C0H5A4
Length = 449
Score = 180 (68.4 bits), Expect = 6.1e-24, Sum P(2) = 6.1e-24
Identities = 32/90 (35%), Positives = 61/90 (67%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
+ + ++KK+L +F+ +G+I D++ +K+ +GQA+V++ + AT AL ++QG+ + K
Sbjct: 186 VKTDEMKKNLKDLFNTYGEIKDLIVMKSFWRKGQAWVVYDDKECATKALNALQGYVLFGK 245
Query: 79 PMRIQYSKTDSDVISKIKGTFMERPKKVRK 108
M+I +S SD+ +K GTF+ER K+ +K
Sbjct: 246 IMQINFSHNKSDIHAKRDGTFVERSKEPKK 275
Score = 124 (48.7 bits), Expect = 6.1e-24, Sum P(2) = 6.1e-24
Identities = 27/81 (33%), Positives = 47/81 (58%)
Query: 166 PEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAK 225
P P +ILF+ N+ E + LF + GF E R++P R+ +AFV+F +E + A
Sbjct: 371 PVVMPYKILFVENVVENVDTQAFNDLFKNYAGFVEARIIPQRN-VAFVDFTDETTATFAM 429
Query: 226 LALHGFKITPTHAMKISFAKK 246
A+ +++ + +KIS+AK+
Sbjct: 430 KAVQNYELQGSK-LKISYAKR 449
>UNIPROTKB|C0H5A4 [details] [associations]
symbol:MAL13P1.35 "U1 small nuclear ribonucleoprotein a,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0030529
GO:GO:0000398 GO:GO:0017069 EMBL:AL844509 PANTHER:PTHR10501
RefSeq:XP_002809001.1 ProteinModelPortal:C0H5A4
EnsemblProtists:MAL13P1.35:mRNA GeneID:813918 KEGG:pfa:MAL13P1.35
EuPathDB:PlasmoDB:PF3D7_1306900 ProtClustDB:CLSZ2433056
Uniprot:C0H5A4
Length = 449
Score = 180 (68.4 bits), Expect = 6.1e-24, Sum P(2) = 6.1e-24
Identities = 32/90 (35%), Positives = 61/90 (67%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
+ + ++KK+L +F+ +G+I D++ +K+ +GQA+V++ + AT AL ++QG+ + K
Sbjct: 186 VKTDEMKKNLKDLFNTYGEIKDLIVMKSFWRKGQAWVVYDDKECATKALNALQGYVLFGK 245
Query: 79 PMRIQYSKTDSDVISKIKGTFMERPKKVRK 108
M+I +S SD+ +K GTF+ER K+ +K
Sbjct: 246 IMQINFSHNKSDIHAKRDGTFVERSKEPKK 275
Score = 124 (48.7 bits), Expect = 6.1e-24, Sum P(2) = 6.1e-24
Identities = 27/81 (33%), Positives = 47/81 (58%)
Query: 166 PEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAK 225
P P +ILF+ N+ E + LF + GF E R++P R+ +AFV+F +E + A
Sbjct: 371 PVVMPYKILFVENVVENVDTQAFNDLFKNYAGFVEARIIPQRN-VAFVDFTDETTATFAM 429
Query: 226 LALHGFKITPTHAMKISFAKK 246
A+ +++ + +KIS+AK+
Sbjct: 430 KAVQNYELQGSK-LKISYAKR 449
>CGD|CAL0004764 [details] [associations]
symbol:orf19.7375 species:5476 "Candida albicans" [GO:0000398
"mRNA splicing, via spliceosome" evidence=IEA;ISO] [GO:0030619 "U1
snRNA binding" evidence=IEA;ISO] [GO:0005685 "U1 snRNP"
evidence=IEA;ISO] [GO:0071004 "U2-type prespliceosome"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0004764
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:AACQ01000066 GO:GO:0000398
GO:GO:0005685 eggNOG:NOG317159 PANTHER:PTHR10501 GO:GO:0030619
HOGENOM:HOG000217519 RefSeq:XP_716616.1 ProteinModelPortal:Q5A4F9
STRING:Q5A4F9 GeneID:3641744 KEGG:cal:CaO19.7375 Uniprot:Q5A4F9
Length = 204
Score = 169 (64.5 bits), Expect = 3.7e-22, Sum P(2) = 3.7e-22
Identities = 39/91 (42%), Positives = 57/91 (62%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
+S LK L F+ G+I+ I ALKTLK++GQAF+ F++I SAT AL + + K
Sbjct: 17 VSINKLKNELQQTFNVCGKILQISALKTLKLKGQAFITFEDIPSATKALE-LNKKDLFSK 75
Query: 79 PMRIQYSKTDSDVISKIKGTFMERPKKVRKQ 109
PM + Y+K+D+DVIS +R KK+R +
Sbjct: 76 PMNVTYAKSDADVIST-DDNIAQR-KKLRSK 104
Score = 103 (41.3 bits), Expect = 3.7e-22, Sum P(2) = 3.7e-22
Identities = 32/82 (39%), Positives = 46/82 (56%)
Query: 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENE--MQSAAA 224
E PPN IL + NL E+ + L + F +F GF VRLV ++ +AF+EFE+E +S
Sbjct: 128 ELPPNHILLIQNL-EKFDD--LKIYFEKFAGFDNVRLVKVKN-LAFIEFESEDLAKSCLD 183
Query: 225 KLALHGFKITPTHAMKISFAKK 246
+ K H + +SFAKK
Sbjct: 184 QTTEDDLKQFG-HDVILSFAKK 204
>UNIPROTKB|Q5A4F9 [details] [associations]
symbol:USA1 "Putative uncharacterized protein USA1"
species:237561 "Candida albicans SC5314" [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISO] [GO:0005685 "U1 snRNP"
evidence=ISO] [GO:0030619 "U1 snRNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0004764
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:AACQ01000066 GO:GO:0000398
GO:GO:0005685 eggNOG:NOG317159 PANTHER:PTHR10501 GO:GO:0030619
HOGENOM:HOG000217519 RefSeq:XP_716616.1 ProteinModelPortal:Q5A4F9
STRING:Q5A4F9 GeneID:3641744 KEGG:cal:CaO19.7375 Uniprot:Q5A4F9
Length = 204
Score = 169 (64.5 bits), Expect = 3.7e-22, Sum P(2) = 3.7e-22
Identities = 39/91 (42%), Positives = 57/91 (62%)
Query: 19 ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK 78
+S LK L F+ G+I+ I ALKTLK++GQAF+ F++I SAT AL + + K
Sbjct: 17 VSINKLKNELQQTFNVCGKILQISALKTLKLKGQAFITFEDIPSATKALE-LNKKDLFSK 75
Query: 79 PMRIQYSKTDSDVISKIKGTFMERPKKVRKQ 109
PM + Y+K+D+DVIS +R KK+R +
Sbjct: 76 PMNVTYAKSDADVIST-DDNIAQR-KKLRSK 104
Score = 103 (41.3 bits), Expect = 3.7e-22, Sum P(2) = 3.7e-22
Identities = 32/82 (39%), Positives = 46/82 (56%)
Query: 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENE--MQSAAA 224
E PPN IL + NL E+ + L + F +F GF VRLV ++ +AF+EFE+E +S
Sbjct: 128 ELPPNHILLIQNL-EKFDD--LKIYFEKFAGFDNVRLVKVKN-LAFIEFESEDLAKSCLD 183
Query: 225 KLALHGFKITPTHAMKISFAKK 246
+ K H + +SFAKK
Sbjct: 184 QTTEDDLKQFG-HDVILSFAKK 204
>ASPGD|ASPL0000027676 [details] [associations]
symbol:AN5779 species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0017069 "snRNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
EMBL:BN001305 GO:GO:0030529 GO:GO:0000398 GO:GO:0017069
PANTHER:PTHR10501 ProteinModelPortal:C8VFF2
EnsemblFungi:CADANIAT00003274 HOGENOM:HOG000181731 OMA:DIQTATQ
Uniprot:C8VFF2
Length = 188
Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
Identities = 42/78 (53%), Positives = 65/78 (83%)
Query: 23 DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRI 82
DL+ +LY +FS +G ++DIVA+KT KMRGQA V+FK+I ++T A+R++QGF F+ KPM+I
Sbjct: 36 DLRLALYTLFSTYGTVLDIVAMKTEKMRGQAHVVFKDIQASTQAMRALQGFEFFGKPMKI 95
Query: 83 QYSKTDSDVISKIKGTFM 100
Y+K SDVI++++GT++
Sbjct: 96 VYAKGSSDVIARLRGTYV 113
>UNIPROTKB|G4MYZ3 [details] [associations]
symbol:MGG_04351 "U2 small nuclear ribonucleoprotein B"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0000398 EMBL:CM001232
GO:GO:0017069 PANTHER:PTHR10501 RefSeq:XP_003713461.1
ProteinModelPortal:G4MYZ3 EnsemblFungi:MGG_04351T0 GeneID:2677780
KEGG:mgr:MGG_04351 Uniprot:G4MYZ3
Length = 207
Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
Identities = 36/77 (46%), Positives = 61/77 (79%)
Query: 23 DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRI 82
D++ +LY +FS +G ++D+V LKT+KMRGQA ++F++I ++T A+RS+ GF F+ ++I
Sbjct: 45 DMRTALYMLFSTYGPLLDVVVLKTMKMRGQAHIVFRDIHASTQAMRSLDGFDFFGSKLKI 104
Query: 83 QYSKTDSDVISKIKGTF 99
+Y+KT S+ I+K+ GTF
Sbjct: 105 EYAKTKSNTIAKLDGTF 121
>POMBASE|SPBC8D2.09c [details] [associations]
symbol:msl1 "U2 snRNP-associated protein Msl1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0005634
"nucleus" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=NAS] [GO:0005686 "U2 snRNP" evidence=ISO] [GO:0005829
"cytosol" evidence=IDA] [GO:0030620 "U2 snRNA binding"
evidence=ISO] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 PROSITE:PS50102 SMART:SM00360
PomBase:SPBC8D2.09c GO:GO:0005829 GO:GO:0000166 EMBL:CU329671
Gene3D:3.30.70.330 GO:GO:0005681 EMBL:AB004538 GO:GO:0005686
GO:GO:0045292 eggNOG:NOG317159 OrthoDB:EOG4TB7MM GO:GO:0030620
PANTHER:PTHR10501 PIR:T40754 RefSeq:NP_595571.1
ProteinModelPortal:Q7LL14 IntAct:Q7LL14 STRING:Q7LL14
EnsemblFungi:SPBC8D2.09c.1 GeneID:2541219 KEGG:spo:SPBC8D2.09c
OMA:LYLYCTQ NextBio:20802331 Uniprot:Q7LL14
Length = 111
Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
Identities = 43/108 (39%), Positives = 69/108 (63%)
Query: 12 NFVYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNAL 67
N +YV + I+ DL+ +LY +FS +G ++DIVALKT KMRGQA V+F + ++A A+
Sbjct: 4 NTLYVNNLNDKINKNDLRTALYMLFSTYGTVVDIVALKTPKMRGQAHVVFFDPSAAAIAM 63
Query: 68 RSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMER-PKKVRKQPAPVE 114
++++ F F+ K M+IQY+ + S +I +I R P K + A +E
Sbjct: 64 KALKNFIFFGKEMKIQYAHSKSKIIERIVAENDSRGPLKRLRDEADLE 111
>GENEDB_PFALCIPARUM|PF13_0122 [details] [associations]
symbol:PF13_0122 "cyclophilin, putative"
species:5833 "Plasmodium falciparum" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003755 "peptidyl-prolyl cis-trans isomerase
activity" evidence=ISS] [GO:0006457 "protein folding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K01802 EMBL:AL844509 HOGENOM:HOG000276232
GO:GO:0003755 RefSeq:XP_002809024.1 ProteinModelPortal:C0H5C7
EnsemblProtists:PF13_0122:mRNA GeneID:814093 KEGG:pfa:PF13_0122
EuPathDB:PlasmoDB:PF3D7_1320900 ProtClustDB:CLSZ2433376
Uniprot:C0H5C7
Length = 125
Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 35/80 (43%), Positives = 46/80 (57%)
Query: 11 TNFVYVTHISSTDLKKSLYAIFSQFGQIMDI-VALK--TLKMRGQAFVIFKEIASATNAL 67
T+ ++V I T +KSLY IFS FG I +I V L T K RG AFV + E+ A +AL
Sbjct: 7 TDILFVGGIDETIDEKSLYDIFSSFGDIRNIEVPLNMTTKKNRGFAFVEYVEVDDAKHAL 66
Query: 68 RSMQGFPFYDKPMRIQYSKT 87
+M F K + + YSKT
Sbjct: 67 YNMNNFELNGKRIHVNYSKT 86
>UNIPROTKB|C0H5C7 [details] [associations]
symbol:PF13_0122 "RRM containing cyclophilin" species:36329
"Plasmodium falciparum 3D7" [GO:0000413 "protein peptidyl-prolyl
isomerization" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003755 "peptidyl-prolyl cis-trans isomerase
activity" evidence=ISS] [GO:0006457 "protein folding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K01802 EMBL:AL844509 HOGENOM:HOG000276232
GO:GO:0003755 RefSeq:XP_002809024.1 ProteinModelPortal:C0H5C7
EnsemblProtists:PF13_0122:mRNA GeneID:814093 KEGG:pfa:PF13_0122
EuPathDB:PlasmoDB:PF3D7_1320900 ProtClustDB:CLSZ2433376
Uniprot:C0H5C7
Length = 125
Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 35/80 (43%), Positives = 46/80 (57%)
Query: 11 TNFVYVTHISSTDLKKSLYAIFSQFGQIMDI-VALK--TLKMRGQAFVIFKEIASATNAL 67
T+ ++V I T +KSLY IFS FG I +I V L T K RG AFV + E+ A +AL
Sbjct: 7 TDILFVGGIDETIDEKSLYDIFSSFGDIRNIEVPLNMTTKKNRGFAFVEYVEVDDAKHAL 66
Query: 68 RSMQGFPFYDKPMRIQYSKT 87
+M F K + + YSKT
Sbjct: 67 YNMNNFELNGKRIHVNYSKT 86
>CGD|CAL0004460 [details] [associations]
symbol:orf19.4748 species:5476 "Candida albicans" [GO:0030620
"U2 snRNA binding" evidence=IEA;ISO] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IEA;ISO] [GO:0005686 "U2 snRNP"
evidence=ISO] [GO:0071004 "U2-type prespliceosome" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 PROSITE:PS50102 SMART:SM00360
CGD:CAL0004460 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:AACQ01000001
GO:GO:0000398 GO:GO:0005686 GO:GO:0030620 PANTHER:PTHR10501
RefSeq:XP_723434.1 ProteinModelPortal:Q5AQ60 STRING:Q5AQ60
GeneID:3634924 KEGG:cal:CaO19.4748 Uniprot:Q5AQ60
Length = 131
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 31/80 (38%), Positives = 48/80 (60%)
Query: 17 THISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFY 76
T I+ L +LY +FS FG DI+++ G AF+IF + SAT ALR+++ F+
Sbjct: 41 TKINKKILLHNLYLLFSAFG---DIISINL--QNGFAFIIFSNLNSATLALRNLKNQDFF 95
Query: 77 DKPMRIQYSKTDSDVISKIK 96
DKP+ + Y+ +S IS+ K
Sbjct: 96 DKPLVLNYAVKESKAISQEK 115
>UNIPROTKB|Q5AQ60 [details] [associations]
symbol:MSL1 "Putative uncharacterized protein MSL1"
species:237561 "Candida albicans SC5314" [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISO] [GO:0005686 "U2 snRNP"
evidence=ISO] [GO:0030620 "U2 snRNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
PROSITE:PS50102 SMART:SM00360 CGD:CAL0004460 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:AACQ01000001 GO:GO:0000398 GO:GO:0005686
GO:GO:0030620 PANTHER:PTHR10501 RefSeq:XP_723434.1
ProteinModelPortal:Q5AQ60 STRING:Q5AQ60 GeneID:3634924
KEGG:cal:CaO19.4748 Uniprot:Q5AQ60
Length = 131
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 31/80 (38%), Positives = 48/80 (60%)
Query: 17 THISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFY 76
T I+ L +LY +FS FG DI+++ G AF+IF + SAT ALR+++ F+
Sbjct: 41 TKINKKILLHNLYLLFSAFG---DIISINL--QNGFAFIIFSNLNSATLALRNLKNQDFF 95
Query: 77 DKPMRIQYSKTDSDVISKIK 96
DKP+ + Y+ +S IS+ K
Sbjct: 96 DKPLVLNYAVKESKAISQEK 115
>SGD|S000001448 [details] [associations]
symbol:MSL1 "U2B component of U2 snRNP" species:4932
"Saccharomyces cerevisiae" [GO:0005686 "U2 snRNP" evidence=TAS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IEA;ISS;IMP;IPI] [GO:0030620 "U2 snRNA
binding" evidence=IPI] [GO:0071004 "U2-type prespliceosome"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0017069 "snRNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 PROSITE:PS50102 SMART:SM00360 SGD:S000001448
GO:GO:0000166 EMBL:BK006942 Gene3D:3.30.70.330 EMBL:X79743
GO:GO:0000398 GO:GO:0005686 GO:GO:0071004 EMBL:Z37996 EMBL:AY558237
PIR:S48353 RefSeq:NP_012274.1 ProteinModelPortal:P40567 SMR:P40567
DIP:DIP-816N IntAct:P40567 MINT:MINT-572508 STRING:P40567
PaxDb:P40567 EnsemblFungi:YIR009W GeneID:854826 KEGG:sce:YIR009W
CYGD:YIR009w eggNOG:NOG317159 GeneTree:ENSGT00390000007046
HOGENOM:HOG000000973 OrthoDB:EOG4TB7MM NextBio:977683
Genevestigator:P40567 GermOnline:YIR009W GO:GO:0030620
PANTHER:PTHR10501 Uniprot:P40567
Length = 111
Score = 124 (48.7 bits), Expect = 5.4e-08, P = 5.4e-08
Identities = 26/85 (30%), Positives = 53/85 (62%)
Query: 12 NFVYVTH----ISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNAL 67
N +YV+ I+ L+ +L+ +F+ FG+++ V++ K RGQAF+ + I A+ A
Sbjct: 28 NTLYVSQLNEKINMQRLRVNLFLLFATFGEVLK-VSMNFKKQRGQAFITMRTIDQASLAQ 86
Query: 68 RSMQGFPFYDKPMRIQYSKTDSDVI 92
S+ G F+ KP+++++SK+++ +
Sbjct: 87 ISLNGERFFGKPLKVEFSKSETKTL 111
>RGD|727953 [details] [associations]
symbol:Smptb "polypyrimidine tract-binding protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000380 "alternative mRNA splicing, via spliceosome"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR000504 InterPro:IPR006536
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 RGD:727953
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0000380 TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508
HOVERGEN:HBG069548 eggNOG:NOG263741 HOGENOM:HOG000231699
OrthoDB:EOG4GMTXQ HSSP:P26599 EMBL:CH474078 EMBL:AY223520
IPI:IPI00331913 RefSeq:NP_877970.1 UniGene:Rn.97598 SMR:Q80XZ1
Ensembl:ENSRNOT00000014611 GeneID:302879 KEGG:rno:302879
UCSC:RGD:727953 CTD:302879 NextBio:650282 Genevestigator:Q80XZ1
Uniprot:Q80XZ1
Length = 588
Score = 110 (43.8 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 26/79 (32%), Positives = 41/79 (51%)
Query: 169 PPNQILFLTNLPEETSEMMLSMLFNQFPGF--KEVRLVPNRHDIAFVEFENEMQSAAAKL 226
PP+ L L+NLP SE L LF+ G+ K R P H +A + + ++ A +
Sbjct: 508 PPSATLHLSNLPSLVSEEELKNLFSS-NGYAVKAFRFFPKNHKMALIRMGSTEEAIQALV 566
Query: 227 ALHGFKITPTHAMKISFAK 245
LHG + H M++SF++
Sbjct: 567 DLHGHLLGQNHHMRVSFSR 585
Score = 75 (31.5 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 27/93 (29%), Positives = 44/93 (47%)
Query: 28 LYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK--PMRIQYS 85
L+ IFS+FG ++ I+ T R QA + + + SA A + G YD +RI +S
Sbjct: 206 LHQIFSRFGTVLKIITC-TKNNRFQALLQYAHVMSAERAKLFLDGQNIYDACCTLRISFS 264
Query: 86 KTDSDVI--SKIKGTFMERPKKVR--KQPAPVE 114
+ ++ + K RP QP+PV+
Sbjct: 265 GLTNLMVKYNNDKSRDYMRPDLPSDDSQPSPVQ 297
Score = 62 (26.9 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 21/65 (32%), Positives = 32/65 (49%)
Query: 26 KSLYAIFSQFGQIMDIVALKTLKMRGQ-AFVIFKEIASATNALRSMQGFPFYDKPMRIQY 84
+SL+ +F +G D+ +K L R + A V + + A ALR + G Y K + I
Sbjct: 409 RSLFILFGAYG---DVHRVKILFNRKENALVQMADGSQAELALRHLNGHKLYGKALCILL 465
Query: 85 SKTDS 89
SK S
Sbjct: 466 SKHQS 470
>DICTYBASE|DDB_G0293252 [details] [associations]
symbol:DDB_G0293252 "putative RNA binding protein"
species:44689 "Dictyostelium discoideum" [GO:0006396 "RNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000061
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 Pfam:PF01805
PROSITE:PS50102 PROSITE:PS50128 SMART:SM00360 SMART:SM00648
dictyBase:DDB_G0293252 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AAFI02000200 GO:GO:0006396 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 SUPFAM:SSF109905
PROSITE:PS51391 eggNOG:NOG314315 RefSeq:XP_629218.1
ProteinModelPortal:Q54C48 GeneID:8629100 KEGG:ddi:DDB_G0293252
InParanoid:Q54C48 OMA:FGKVENA Uniprot:Q54C48
Length = 691
Score = 92 (37.4 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 25/80 (31%), Positives = 42/80 (52%)
Query: 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKL 226
E+ P + L+L N+ S +L +F+QF +R++ R AFV F +AAA+
Sbjct: 271 EETPTKNLWLGNVNSNVSYELLKQIFDQFGNVDTIRILHGR-GCAFVNFFTVESAAAARN 329
Query: 227 ALHGFKITPTHAMKISFAKK 246
L+G + +KI+F K+
Sbjct: 330 GLNGTMVCGM-PLKINFRKE 348
Score = 89 (36.4 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 22/105 (20%), Positives = 51/105 (48%)
Query: 11 TNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSM 70
T V+ +I+ ++ + +FSQFG + A+K + + AF+ F ++ A A ++
Sbjct: 176 TKIVWAGNINPESTEEEVRHLFSQFGYLQ---AIKIIPNKQCAFITFADVNCAIQAQFNL 232
Query: 71 QGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVED 115
G F P+++ + K ++ + G ++ K ++ P ++
Sbjct: 233 NGTIFRGLPLKLGFGKVENAPQANFGGGRFDQYNKPHQEETPTKN 277
>ZFIN|ZDB-GENE-050320-141 [details] [associations]
symbol:ptbp2a "polypyrimidine tract binding protein
2a" species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-050320-141
GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508
EMBL:CU896585 IPI:IPI00996240 Ensembl:ENSDART00000123275
Bgee:F1QG05 Uniprot:F1QG05
Length = 512
Score = 98 (39.6 bits), Expect = 6.5e-06, Sum P(2) = 6.5e-06
Identities = 20/77 (25%), Positives = 40/77 (51%)
Query: 169 PPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLAL 228
PP+ L L+N+P++ +E L +LF+ G + H +A ++ ++ + L
Sbjct: 433 PPSATLHLSNIPQDVTEEDLRVLFSNSGGTVKAFKFFQDHKMALIQMSTIEEAIQCLIDL 492
Query: 229 HGFKITPTHAMKISFAK 245
H + + H +K+SF+K
Sbjct: 493 HNYNMGNNHHLKVSFSK 509
Score = 72 (30.4 bits), Expect = 6.5e-06, Sum P(2) = 6.5e-06
Identities = 21/61 (34%), Positives = 32/61 (52%)
Query: 28 LYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK--PMRIQYS 85
L IFS+FG +M I+ T + QA + + + A A A ++ G Y+ +RI YS
Sbjct: 183 LQQIFSKFGTVMKIITF-TKNNQFQALLQYNDPACAQQAKVALDGQNIYNACCTLRIDYS 241
Query: 86 K 86
K
Sbjct: 242 K 242
>POMBASE|SPBC29A3.07c [details] [associations]
symbol:sab14 "U2 snRNP-associated protein SF3B14
ortholog (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0000384 "first spliceosomal transesterification activity"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISM] [GO:0005681
"spliceosomal complex" evidence=NAS] [GO:0005686 "U2 snRNP"
evidence=ISS] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPBC29A3.07c GO:GO:0000166
EMBL:CU329671 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
GO:GO:0005686 eggNOG:COG0724 GO:GO:0045292 HOGENOM:HOG000276232
PIR:T40078 HSSP:Q9Y3B4 ProteinModelPortal:O59670 IntAct:O59670
STRING:O59670 OrthoDB:EOG4HB1W3 NextBio:20801589 GO:GO:0000384
Uniprot:O59670
Length = 115
Score = 106 (42.4 bits), Expect = 7.6e-06, P = 7.6e-06
Identities = 18/75 (24%), Positives = 41/75 (54%)
Query: 10 VTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
V + +++ ++S + +Y +F ++G + I T++ RG AFV+++ + A A
Sbjct: 10 VNSILFIKNLSFKITAEEMYDLFGRYGPVRQIRLGNTVQTRGTAFVVYENVQDARRACEK 69
Query: 70 MQGFPFYDKPMRIQY 84
+ G+ F D+ + + Y
Sbjct: 70 LSGYNFMDRYLVVHY 84
>TAIR|locus:2135605 [details] [associations]
symbol:AT4G12640 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR012921 Pfam:PF07744 IPI:IPI00546459 RefSeq:NP_193001.2
UniGene:At.46444 ProteinModelPortal:F4JRD9 SMR:F4JRD9 PRIDE:F4JRD9
EnsemblPlants:AT4G12640.1 GeneID:826877 KEGG:ath:AT4G12640
OMA:ERNYEAG Uniprot:F4JRD9
Length = 823
Score = 89 (36.4 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 23/75 (30%), Positives = 42/75 (56%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGF 73
++V ++ L++ L F +FG++ + +A + R AFV F A A+ S+QGF
Sbjct: 25 LWVGNLPHGILERELADRFLRFGEL-ESLAFQP--GRSYAFVNFNHDEDAFAAIESLQGF 81
Query: 74 PFYDKPMRIQYSKTD 88
P P+RI+++K +
Sbjct: 82 PLSGNPLRIEFAKAE 96
Score = 83 (34.3 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 24/78 (30%), Positives = 41/78 (52%)
Query: 170 PNQILFLTNLPE--ETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLA 227
P+++L++ P + + +L +F+ F +V + P R AFV+F N M + AK +
Sbjct: 149 PSEVLYI-GFPASLKVDDALLRNVFSSFGEITKVTVFPGR-SYAFVQFRNLMAACKAKES 206
Query: 228 LHGFKITPTHAMKISFAK 245
L G K+ + I FAK
Sbjct: 207 LQG-KLFGNPRVHICFAK 223
>UNIPROTKB|P26599 [details] [associations]
symbol:PTBP1 "Polypyrimidine tract-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IDA] [GO:0051148 "negative regulation of
muscle cell differentiation" evidence=IDA] [GO:0036002 "pre-mRNA
binding" evidence=IDA] [GO:0033119 "negative regulation of RNA
splicing" evidence=IDA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=IDA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0005730 "nucleolus" evidence=TAS] [GO:0008187 "poly-pyrimidine
tract binding" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0000398 EMBL:CH471242
GO:GO:0048025 GO:GO:0000381 GO:GO:0008187 GO:GO:0036002
TIGRFAMs:TIGR01649 CTD:5725 HOVERGEN:HBG069548 KO:K13218
OMA:SEECAQT GO:GO:0051148 EMBL:X62006 EMBL:X65371 EMBL:X65372
EMBL:X60648 EMBL:X66975 EMBL:BT006819 EMBL:AC006273 EMBL:BC002397
EMBL:BC004383 EMBL:BC013694 IPI:IPI00179964 IPI:IPI00183626
IPI:IPI00334175 PIR:S23016 RefSeq:NP_002810.1 RefSeq:NP_114367.1
RefSeq:NP_114368.1 UniGene:Hs.172550 PDB:1QM9 PDB:1SJQ PDB:1SJR
PDB:2AD9 PDB:2ADB PDB:2ADC PDB:2EVZ PDB:3ZZY PDB:3ZZZ PDBsum:1QM9
PDBsum:1SJQ PDBsum:1SJR PDBsum:2AD9 PDBsum:2ADB PDBsum:2ADC
PDBsum:2EVZ PDBsum:3ZZY PDBsum:3ZZZ ProteinModelPortal:P26599
SMR:P26599 IntAct:P26599 MINT:MINT-1348690 STRING:P26599
PhosphoSite:P26599 DMDM:131528 SWISS-2DPAGE:P26599 PaxDb:P26599
PRIDE:P26599 DNASU:5725 Ensembl:ENST00000349038
Ensembl:ENST00000356948 Ensembl:ENST00000394601 GeneID:5725
KEGG:hsa:5725 UCSC:uc002lpq.2 UCSC:uc002lpr.2 GeneCards:GC19P000797
H-InvDB:HIX0137476 HGNC:HGNC:9583 HPA:CAB013507 MIM:600693
neXtProt:NX_P26599 PharmGKB:PA33934 eggNOG:NOG263741
HOGENOM:HOG000231699 ChEMBL:CHEMBL1293230 EvolutionaryTrace:P26599
GenomeRNAi:5725 NextBio:22252 PMAP-CutDB:P26599 ArrayExpress:P26599
Bgee:P26599 CleanEx:HS_PTBP1 Genevestigator:P26599
GermOnline:ENSG00000011304 Uniprot:P26599
Length = 531
Score = 92 (37.4 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 21/78 (26%), Positives = 39/78 (50%)
Query: 169 PPNQILFLTNLPEETSEMMLSMLFNQFPGF-KEVRLVPNRHDIAFVEFENEMQSAAAKLA 227
PP+ L L+N+P SE L +LF+ G K + +A ++ + ++ A +
Sbjct: 451 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALID 510
Query: 228 LHGFKITPTHAMKISFAK 245
LH + H +++SF+K
Sbjct: 511 LHNHDLGENHHLRVSFSK 528
Score = 75 (31.5 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 21/64 (32%), Positives = 35/64 (54%)
Query: 28 LYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK--PMRIQYS 85
L+ IFS+FG ++ I+ T + QA + + + SA +A S+ G Y+ +RI +S
Sbjct: 200 LHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 258
Query: 86 KTDS 89
K S
Sbjct: 259 KLTS 262
Score = 59 (25.8 bits), Expect = 0.00079, Sum P(2) = 0.00079
Identities = 16/61 (26%), Positives = 28/61 (45%)
Query: 26 KSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYS 85
+SL+ +F +G + + L + A V + A A+ + G + KP+RI S
Sbjct: 352 QSLFILFGVYGDVQRVKIL--FNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 409
Query: 86 K 86
K
Sbjct: 410 K 410
>UNIPROTKB|K7EJV5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
Length = 105
Score = 102 (41.0 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 25/80 (31%), Positives = 45/80 (56%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVALK---TLKMRGQAFVIFKEIASATNALRSM 70
++V +S ++SL +FS++GQI ++V +K T + RG FV F+ I A +A+ +M
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 71 QGFPFYDKPMRIQYSKTDSD 90
G + +R+ + SD
Sbjct: 68 NGKSVDGRQIRVDQAGKSSD 87
>UNIPROTKB|K7GNR2 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000034855 Uniprot:K7GNR2
Length = 129
Score = 102 (41.0 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 23/79 (29%), Positives = 47/79 (59%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVALK---TLKMRGQAFVIFKEIASATNALRSM 70
+++ +++ +K+L A+F ++G+I++++ +K T K RG AFV F+ A A +A R M
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 71 QGFPFYDKPMRIQYSKTDS 89
G K ++++ + S
Sbjct: 70 NGKSLDGKAIKVEQATKPS 88
>WB|WBGene00004207 [details] [associations]
symbol:ptb-1 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0000398 EMBL:Z36948 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 eggNOG:NOG263741 HOGENOM:HOG000231699
OMA:IKMHNHK PIR:A88299 PIR:T20381 RefSeq:NP_741041.1 HSSP:P26599
ProteinModelPortal:Q18999 SMR:Q18999 DIP:DIP-24857N IntAct:Q18999
MINT:MINT-1089938 STRING:Q18999 PaxDb:Q18999 PRIDE:Q18999
EnsemblMetazoa:D2089.4a GeneID:174647 KEGG:cel:CELE_D2089.4
UCSC:D2089.4a CTD:174647 WormBase:D2089.4a InParanoid:Q18999
NextBio:884900 ArrayExpress:Q18999 Uniprot:Q18999
Length = 615
Score = 100 (40.3 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 24/79 (30%), Positives = 40/79 (50%)
Query: 169 PPNQILFLTNLPEETSEMMLSMLFNQFPGF--KEVRLVPNRHDIAFVEFENEMQSAAAKL 226
PP L L+N+P SE L +F + GF K + P H +A + E+ + A +
Sbjct: 535 PPCATLHLSNIPTSVSEEKLKEMFAE-AGFAVKAFKFFPKDHKMALCQLEDIETAIDALI 593
Query: 227 ALHGFKITPTHAMKISFAK 245
A+H K+ +++SF+K
Sbjct: 594 AMHNHKLAENAHLRVSFSK 612
Score = 66 (28.3 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 20/80 (25%), Positives = 42/80 (52%)
Query: 8 ICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL-KMRGQAFVIFKEIASATNA 66
I +T + V+++ ++K + A+F+ FG D++ +K L + A + + E A A
Sbjct: 417 INLTPVILVSNLH--EMKVTTDALFTLFGVYGDVMRVKILYNKKDNALIQYSEPQQAQLA 474
Query: 67 LRSMQGFPFYDKPMRIQYSK 86
L + ++D+ +R+ SK
Sbjct: 475 LTHLDKVKWHDRLIRVAPSK 494
Score = 63 (27.2 bits), Expect = 4.9e-05, Sum P(2) = 4.9e-05
Identities = 23/80 (28%), Positives = 38/80 (47%)
Query: 8 ICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNAL 67
I V+ V+V +I + L + Q+G + + + LK + QAFV ++E ASA +
Sbjct: 117 IPVSKVVHVRNIPPDLVDVELMQLCIQYGPVSNYMMLKG---KSQAFVEYEEEASAAAFV 173
Query: 68 RSMQGFPFY--DKPMRIQYS 85
M P + + QYS
Sbjct: 174 SGMTAVPIQIRGRTLFAQYS 193
>UNIPROTKB|J9P5T5 [details] [associations]
symbol:PTBP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 CTD:5725 KO:K13218 EMBL:AAEX03012673
RefSeq:XP_542215.2 ProteinModelPortal:J9P5T5
Ensembl:ENSCAFT00000049054 GeneID:485097 KEGG:cfa:485097
Uniprot:J9P5T5
Length = 557
Score = 91 (37.1 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 21/78 (26%), Positives = 39/78 (50%)
Query: 169 PPNQILFLTNLPEETSEMMLSMLFNQFPGF-KEVRLVPNRHDIAFVEFENEMQSAAAKLA 227
PP+ L L+N+P SE L +LF+ G K + +A ++ + ++ A +
Sbjct: 477 PPSATLHLSNIPPSVSEDDLKILFSSNGGIVKGFKFFQKDRKMALIQMGSVEEAIQALID 536
Query: 228 LHGFKITPTHAMKISFAK 245
LH + H +++SF+K
Sbjct: 537 LHNHDLGENHHLRVSFSK 554
Score = 75 (31.5 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 21/64 (32%), Positives = 35/64 (54%)
Query: 28 LYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK--PMRIQYS 85
L+ IFS+FG ++ I+ T + QA + + + SA +A S+ G Y+ +RI +S
Sbjct: 200 LHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 258
Query: 86 KTDS 89
K S
Sbjct: 259 KLTS 262
Score = 62 (26.9 bits), Expect = 0.00057, Sum P(2) = 0.00057
Identities = 16/61 (26%), Positives = 29/61 (47%)
Query: 26 KSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYS 85
+SL+ +F +G + + L + A V + + A A+ + G + KP+RI S
Sbjct: 378 QSLFILFGVYGDVQRVKIL--FNKKENALVQMADGSQAQLAMSHLNGHKLHGKPVRITLS 435
Query: 86 K 86
K
Sbjct: 436 K 436
>UNIPROTKB|F1S6R7 [details] [associations]
symbol:PTBP1 "Polypyrimidine tract-binding protein 1"
species:9823 "Sus scrofa" [GO:0051148 "negative regulation of
muscle cell differentiation" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=IEA]
[GO:0036002 "pre-mRNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0048025 GO:GO:0000381
GO:GO:0036002 TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508
OMA:SEECAQT GO:GO:0051148 EMBL:FP015903 Ensembl:ENSSSCT00000014665
Uniprot:F1S6R7
Length = 557
Score = 91 (37.1 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 21/78 (26%), Positives = 39/78 (50%)
Query: 169 PPNQILFLTNLPEETSEMMLSMLFNQFPGF-KEVRLVPNRHDIAFVEFENEMQSAAAKLA 227
PP+ L L+N+P SE L +LF+ G K + +A ++ + ++ A +
Sbjct: 477 PPSATLHLSNIPPSISEEDLKILFSSNGGIVKGFKFFQKDRKMALIQMGSVEEAIQALID 536
Query: 228 LHGFKITPTHAMKISFAK 245
LH + H +++SF+K
Sbjct: 537 LHNHDLGENHHLRVSFSK 554
Score = 75 (31.5 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 21/64 (32%), Positives = 35/64 (54%)
Query: 28 LYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK--PMRIQYS 85
L+ IFS+FG ++ I+ T + QA + + + SA +A S+ G Y+ +RI +S
Sbjct: 200 LHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 258
Query: 86 KTDS 89
K S
Sbjct: 259 KLTS 262
Score = 62 (26.9 bits), Expect = 0.00057, Sum P(2) = 0.00057
Identities = 16/61 (26%), Positives = 29/61 (47%)
Query: 26 KSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYS 85
+SL+ +F +G + + L + A V + + A A+ + G + KP+RI S
Sbjct: 378 QSLFILFGVYGDVQRVKIL--FNKKENALVQMADGSQAQLAMSHLNGHKLHGKPVRITLS 435
Query: 86 K 86
K
Sbjct: 436 K 436
>UNIPROTKB|Q29099 [details] [associations]
symbol:PTBP1 "Polypyrimidine tract-binding protein 1"
species:9823 "Sus scrofa" [GO:0051148 "negative regulation of
muscle cell differentiation" evidence=ISS] [GO:0000381 "regulation
of alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006536
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0048025 GO:GO:0000381 TIGRFAMs:TIGR01649
CTD:5725 HOVERGEN:HBG069548 KO:K13218 GO:GO:0051148
eggNOG:NOG263741 HOGENOM:HOG000231699 EMBL:X93009 PIR:S68857
RefSeq:NP_999396.1 UniGene:Ssc.16210 ProteinModelPortal:Q29099
SMR:Q29099 STRING:Q29099 PRIDE:Q29099 GeneID:397461 KEGG:ssc:397461
OrthoDB:EOG4GMTXQ Uniprot:Q29099
Length = 557
Score = 91 (37.1 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 21/78 (26%), Positives = 39/78 (50%)
Query: 169 PPNQILFLTNLPEETSEMMLSMLFNQFPGF-KEVRLVPNRHDIAFVEFENEMQSAAAKLA 227
PP+ L L+N+P SE L +LF+ G K + +A ++ + ++ A +
Sbjct: 477 PPSATLHLSNIPPSISEEDLKILFSSNGGIVKGFKFFQKDRKMALIQMGSVEEAIQALID 536
Query: 228 LHGFKITPTHAMKISFAK 245
LH + H +++SF+K
Sbjct: 537 LHNHDLGENHHLRVSFSK 554
Score = 75 (31.5 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 21/64 (32%), Positives = 35/64 (54%)
Query: 28 LYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK--PMRIQYS 85
L+ IFS+FG ++ I+ T + QA + + + SA +A S+ G Y+ +RI +S
Sbjct: 200 LHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 258
Query: 86 KTDS 89
K S
Sbjct: 259 KLTS 262
Score = 61 (26.5 bits), Expect = 0.00073, Sum P(2) = 0.00073
Identities = 17/58 (29%), Positives = 28/58 (48%)
Query: 30 AIFSQFGQIMDIVALKTL-KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSK 86
++F FG D+ +K L + A V + + A A+ + G + KP+RI SK
Sbjct: 379 SLFILFGVYCDVQRVKILFNKKENALVQMADGSQAQLAMSHLNGHKLHGKPVRITLSK 436
>UNIPROTKB|F1PCJ7 [details] [associations]
symbol:PTBP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0051148 "negative regulation of muscle cell
differentiation" evidence=IEA] [GO:0048025 "negative regulation of
mRNA splicing, via spliceosome" evidence=IEA] [GO:0036002 "pre-mRNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0048025 GO:GO:0000381
GO:GO:0036002 TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508
OMA:SEECAQT GO:GO:0051148 EMBL:AAEX03012673
Ensembl:ENSCAFT00000031317 Uniprot:F1PCJ7
Length = 558
Score = 91 (37.1 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 21/78 (26%), Positives = 39/78 (50%)
Query: 169 PPNQILFLTNLPEETSEMMLSMLFNQFPGF-KEVRLVPNRHDIAFVEFENEMQSAAAKLA 227
PP+ L L+N+P SE L +LF+ G K + +A ++ + ++ A +
Sbjct: 478 PPSATLHLSNIPPSVSEDDLKILFSSNGGIVKGFKFFQKDRKMALIQMGSVEEAIQALID 537
Query: 228 LHGFKITPTHAMKISFAK 245
LH + H +++SF+K
Sbjct: 538 LHNHDLGENHHLRVSFSK 555
Score = 75 (31.5 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 21/64 (32%), Positives = 35/64 (54%)
Query: 28 LYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK--PMRIQYS 85
L+ IFS+FG ++ I+ T + QA + + + SA +A S+ G Y+ +RI +S
Sbjct: 201 LHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 259
Query: 86 KTDS 89
K S
Sbjct: 260 KLTS 263
Score = 62 (26.9 bits), Expect = 0.00058, Sum P(2) = 0.00058
Identities = 16/61 (26%), Positives = 29/61 (47%)
Query: 26 KSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYS 85
+SL+ +F +G + + L + A V + + A A+ + G + KP+RI S
Sbjct: 379 QSLFILFGVYGDVQRVKIL--FNKKENALVQMADGSQAQLAMSHLNGHKLHGKPVRITLS 436
Query: 86 K 86
K
Sbjct: 437 K 437
>UNIPROTKB|A6NLN1 [details] [associations]
symbol:PTBP1 "Polypyrimidine tract-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471242
TIGRFAMs:TIGR01649 EMBL:AC006273 UniGene:Hs.172550 DNASU:5725
HGNC:HGNC:9583 PharmGKB:PA33934 GenomeRNAi:5725 NextBio:22252
IPI:IPI00413691 SMR:A6NLN1 STRING:A6NLN1 Ensembl:ENST00000350092
UCSC:uc002lps.2 HOGENOM:HOG000045782 HOVERGEN:HBG055095
Uniprot:A6NLN1
Length = 197
Score = 92 (37.4 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 21/78 (26%), Positives = 39/78 (50%)
Query: 169 PPNQILFLTNLPEETSEMMLSMLFNQFPGF-KEVRLVPNRHDIAFVEFENEMQSAAAKLA 227
PP+ L L+N+P SE L +LF+ G K + +A ++ + ++ A +
Sbjct: 117 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALID 176
Query: 228 LHGFKITPTHAMKISFAK 245
LH + H +++SF+K
Sbjct: 177 LHNHDLGENHHLRVSFSK 194
Score = 59 (25.8 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 16/61 (26%), Positives = 28/61 (45%)
Query: 26 KSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYS 85
+SL+ +F +G + + L + A V + A A+ + G + KP+RI S
Sbjct: 18 QSLFILFGVYGDVQRVKIL--FNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 75
Query: 86 K 86
K
Sbjct: 76 K 76
>FB|FBgn0035692 [details] [associations]
symbol:CG13298 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0007052 "mitotic spindle organization"
evidence=IMP] [GO:0048812 "neuron projection morphogenesis"
evidence=IMP] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0022008 "neurogenesis" evidence=IMP] [GO:0005686 "U2 snRNP"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014296 GO:GO:0007052
GO:GO:0022008 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 eggNOG:COG0724 KO:K12833
OMA:YQSTKAF GeneTree:ENSGT00390000005908 EMBL:AY089603
RefSeq:NP_648037.1 UniGene:Dm.1519 ProteinModelPortal:Q9VRV7
SMR:Q9VRV7 DIP:DIP-21174N IntAct:Q9VRV7 MINT:MINT-921416
STRING:Q9VRV7 PaxDb:Q9VRV7 PRIDE:Q9VRV7 EnsemblMetazoa:FBtr0077015
GeneID:38720 KEGG:dme:Dmel_CG13298 UCSC:CG13298-RA
FlyBase:FBgn0035692 InParanoid:Q9VRV7 OrthoDB:EOG4DV43Q
PhylomeDB:Q9VRV7 GenomeRNAi:38720 NextBio:810039 Bgee:Q9VRV7
GermOnline:CG13298 Uniprot:Q9VRV7
Length = 121
Score = 101 (40.6 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 23/79 (29%), Positives = 41/79 (51%)
Query: 10 VTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
V +YV ++ +Y IF +FG I I T + RG AFV++++I A NA
Sbjct: 13 VNRLLYVRNLPYKITSDEMYDIFGKFGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDH 72
Query: 70 MQGFPFYDKPMRIQYSKTD 88
+ GF ++ + + Y +++
Sbjct: 73 LSGFNVCNRYLVVLYYQSN 91
>MGI|MGI:97791 [details] [associations]
symbol:Ptbp1 "polypyrimidine tract binding protein 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0033119 "negative regulation of RNA
splicing" evidence=ISO] [GO:0036002 "pre-mRNA binding"
evidence=ISO] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=ISO] [GO:0051148 "negative regulation of
muscle cell differentiation" evidence=ISO] InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
MGI:MGI:97791 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0048025
GO:GO:0000381 TIGRFAMs:TIGR01649 HOVERGEN:HBG069548 GO:GO:0051148
eggNOG:NOG263741 HOGENOM:HOG000231699 EMBL:X52101 IPI:IPI00749991
UniGene:Mm.265610 ProteinModelPortal:P17225 SMR:P17225
MINT:MINT-1862139 STRING:P17225 PhosphoSite:P17225 PaxDb:P17225
PRIDE:P17225 ChiTaRS:PTBP1 CleanEx:MM_PTBP1 Genevestigator:P17225
GermOnline:ENSMUSG00000006498 Uniprot:P17225
Length = 527
Score = 90 (36.7 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 21/78 (26%), Positives = 38/78 (48%)
Query: 169 PPNQILFLTNLPEETSEMMLSMLFNQFPGF-KEVRLVPNRHDIAFVEFENEMQSAAAKLA 227
PP+ L L+N+P SE L LF+ G K + +A ++ + ++ A +
Sbjct: 447 PPSATLHLSNIPPSVSEDDLKSLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIE 506
Query: 228 LHGFKITPTHAMKISFAK 245
LH + H +++SF+K
Sbjct: 507 LHNHDLGENHHLRVSFSK 524
Score = 75 (31.5 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 21/64 (32%), Positives = 35/64 (54%)
Query: 28 LYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK--PMRIQYS 85
L+ IFS+FG ++ I+ T + QA + + + SA +A S+ G Y+ +RI +S
Sbjct: 199 LHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 257
Query: 86 KTDS 89
K S
Sbjct: 258 KLTS 261
>UNIPROTKB|D4AB53 [details] [associations]
symbol:Ptbp1 "Polypyrimidine tract-binding protein 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 RGD:62047 GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01649
IPI:IPI00390801 Ensembl:ENSRNOT00000030365 ArrayExpress:D4AB53
Uniprot:D4AB53
Length = 528
Score = 90 (36.7 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 21/78 (26%), Positives = 38/78 (48%)
Query: 169 PPNQILFLTNLPEETSEMMLSMLFNQFPGF-KEVRLVPNRHDIAFVEFENEMQSAAAKLA 227
PP+ L L+N+P SE L LF+ G K + +A ++ + ++ A +
Sbjct: 448 PPSATLHLSNIPPSVSEDDLKSLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIE 507
Query: 228 LHGFKITPTHAMKISFAK 245
LH + H +++SF+K
Sbjct: 508 LHNHDLGENHHLRVSFSK 525
Score = 75 (31.5 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 21/64 (32%), Positives = 35/64 (54%)
Query: 28 LYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK--PMRIQYS 85
L+ IFS+FG ++ I+ T + QA + + + SA +A S+ G Y+ +RI +S
Sbjct: 199 LHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 257
Query: 86 KTDS 89
K S
Sbjct: 258 KLTS 261
>UNIPROTKB|Q8WN55 [details] [associations]
symbol:PTBP1 "Polypyrimidine tract-binding protein 1"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=ISS]
[GO:0051148 "negative regulation of muscle cell differentiation"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0048025 "negative regulation of
mRNA splicing, via spliceosome" evidence=IEA] [GO:0036002 "pre-mRNA
binding" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006536
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0048025 GO:GO:0000381 GO:GO:0036002 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 EMBL:AF445640 IPI:IPI00712263
RefSeq:NP_776867.1 UniGene:Bt.9031 ProteinModelPortal:Q8WN55
SMR:Q8WN55 PRIDE:Q8WN55 Ensembl:ENSBTAT00000066209 GeneID:282018
KEGG:bta:282018 CTD:5725 HOVERGEN:HBG069548 KO:K13218 OMA:SEECAQT
NextBio:20805882 ArrayExpress:Q8WN55 GO:GO:0051148 Uniprot:Q8WN55
Length = 531
Score = 90 (36.7 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 21/78 (26%), Positives = 39/78 (50%)
Query: 169 PPNQILFLTNLPEETSEMMLSMLFNQFPGF-KEVRLVPNRHDIAFVEFENEMQSAAAKLA 227
PP+ L L+N+P SE L +LF+ G K + +A ++ + ++ A +
Sbjct: 451 PPSATLHLSNIPPSISEDDLKILFSSNGGIVKGFKFFQKDRKMALIQMGSVEEAIQALID 510
Query: 228 LHGFKITPTHAMKISFAK 245
LH + H +++SF+K
Sbjct: 511 LHNHDLGENHHLRVSFSK 528
Score = 75 (31.5 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 21/64 (32%), Positives = 35/64 (54%)
Query: 28 LYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK--PMRIQYS 85
L+ IFS+FG ++ I+ T + QA + + + SA +A S+ G Y+ +RI +S
Sbjct: 200 LHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 258
Query: 86 KTDS 89
K S
Sbjct: 259 KLTS 262
Score = 65 (27.9 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 17/64 (26%), Positives = 30/64 (46%)
Query: 26 KSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYS 85
+SL+ +F +G + + L + A V + + A A+ + G + KP+RI S
Sbjct: 352 QSLFILFGVYGDVQRVKVL--FNKKENALVQMADGSQAQLAMSHLNGHKLHGKPVRITLS 409
Query: 86 KTDS 89
K S
Sbjct: 410 KHQS 413
>UNIPROTKB|F1LM18 [details] [associations]
symbol:Ptbp1 "Polypyrimidine tract-binding protein 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 RGD:62047 GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 IPI:IPI00562850
Ensembl:ENSRNOT00000044865 ArrayExpress:F1LM18 Uniprot:F1LM18
Length = 554
Score = 90 (36.7 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 21/78 (26%), Positives = 38/78 (48%)
Query: 169 PPNQILFLTNLPEETSEMMLSMLFNQFPGF-KEVRLVPNRHDIAFVEFENEMQSAAAKLA 227
PP+ L L+N+P SE L LF+ G K + +A ++ + ++ A +
Sbjct: 474 PPSATLHLSNIPPSVSEDDLKSLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIE 533
Query: 228 LHGFKITPTHAMKISFAK 245
LH + H +++SF+K
Sbjct: 534 LHNHDLGENHHLRVSFSK 551
Score = 75 (31.5 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 21/64 (32%), Positives = 35/64 (54%)
Query: 28 LYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK--PMRIQYS 85
L+ IFS+FG ++ I+ T + QA + + + SA +A S+ G Y+ +RI +S
Sbjct: 199 LHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 257
Query: 86 KTDS 89
K S
Sbjct: 258 KLTS 261
>RGD|62047 [details] [associations]
symbol:Ptbp1 "polypyrimidine tract binding protein 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO;ISS] [GO:0003697 "single-stranded DNA
binding" evidence=TAS] [GO:0003723 "RNA binding" evidence=IEA;TAS]
[GO:0004519 "endonuclease activity" evidence=TAS] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0033119
"negative regulation of RNA splicing" evidence=ISO] [GO:0036002
"pre-mRNA binding" evidence=ISO] [GO:0048025 "negative regulation of
mRNA splicing, via spliceosome" evidence=ISO;ISS] [GO:0051148
"negative regulation of muscle cell differentiation"
evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR006536
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 RGD:62047
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697 GO:GO:0004519
GO:GO:0048025 GO:GO:0000381 TIGRFAMs:TIGR01649 HOVERGEN:HBG069548
GO:GO:0051148 eggNOG:NOG263741 HOGENOM:HOG000231699 EMBL:X60789
EMBL:X60790 EMBL:X74565 IPI:IPI00231555 IPI:IPI00390239 PIR:S15552
PIR:S36629 UniGene:Rn.64440 ProteinModelPortal:Q00438 SMR:Q00438
STRING:Q00438 PhosphoSite:Q00438 PRIDE:Q00438 UCSC:RGD:62047
InParanoid:Q00438 ChEMBL:CHEMBL2786 NextBio:609388
ArrayExpress:Q00438 Genevestigator:Q00438
GermOnline:ENSRNOG00000010448 Uniprot:Q00438
Length = 555
Score = 90 (36.7 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 21/78 (26%), Positives = 38/78 (48%)
Query: 169 PPNQILFLTNLPEETSEMMLSMLFNQFPGF-KEVRLVPNRHDIAFVEFENEMQSAAAKLA 227
PP+ L L+N+P SE L LF+ G K + +A ++ + ++ A +
Sbjct: 475 PPSATLHLSNIPPSVSEDDLKSLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIE 534
Query: 228 LHGFKITPTHAMKISFAK 245
LH + H +++SF+K
Sbjct: 535 LHNHDLGENHHLRVSFSK 552
Score = 80 (33.2 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 21/76 (27%), Positives = 42/76 (55%)
Query: 171 NQILFLTNL-PEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALH 229
N +L ++NL PE + L +LF + + V+++ N+ + A VE + Q+ A L+
Sbjct: 360 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVEMADGSQAQLAMSHLN 419
Query: 230 GFKITPTHAMKISFAK 245
G K+ +++I+ +K
Sbjct: 420 GHKLHGK-SVRITLSK 434
Score = 75 (31.5 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 21/64 (32%), Positives = 35/64 (54%)
Query: 28 LYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK--PMRIQYS 85
L+ IFS+FG ++ I+ T + QA + + + SA +A S+ G Y+ +RI +S
Sbjct: 199 LHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 257
Query: 86 KTDS 89
K S
Sbjct: 258 KLTS 261
>UNIPROTKB|Q6P736 [details] [associations]
symbol:Ptbp1 "Polypyrimidine tract binding protein 1,
isoform CRA_a" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
RGD:62047 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH474029 TIGRFAMs:TIGR01649
CTD:5725 HOVERGEN:HBG069548 KO:K13218 HOGENOM:HOG000231699
OrthoDB:EOG4GMTXQ IPI:IPI00390239 UniGene:Rn.64440 EMBL:BC061858
RefSeq:NP_001257986.1 RefSeq:NP_071961.2 SMR:Q6P736 STRING:Q6P736
Ensembl:ENSRNOT00000030357 GeneID:29497 KEGG:rno:29497
InParanoid:Q6P736 Genevestigator:Q6P736 Uniprot:Q6P736
Length = 556
Score = 90 (36.7 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 21/78 (26%), Positives = 38/78 (48%)
Query: 169 PPNQILFLTNLPEETSEMMLSMLFNQFPGF-KEVRLVPNRHDIAFVEFENEMQSAAAKLA 227
PP+ L L+N+P SE L LF+ G K + +A ++ + ++ A +
Sbjct: 476 PPSATLHLSNIPPSVSEDDLKSLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIE 535
Query: 228 LHGFKITPTHAMKISFAK 245
LH + H +++SF+K
Sbjct: 536 LHNHDLGENHHLRVSFSK 553
Score = 75 (31.5 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 21/64 (32%), Positives = 35/64 (54%)
Query: 28 LYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK--PMRIQYS 85
L+ IFS+FG ++ I+ T + QA + + + SA +A S+ G Y+ +RI +S
Sbjct: 199 LHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 257
Query: 86 KTDS 89
K S
Sbjct: 258 KLTS 261
>DICTYBASE|DDB_G0290307 [details] [associations]
symbol:DDB_G0290307 "ELAVL1-like protein"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0290307 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000162 eggNOG:NOG256997 RefSeq:XP_635793.1
ProteinModelPortal:Q54G90 EnsemblProtists:DDB0233651 GeneID:8627598
KEGG:ddi:DDB_G0290307 InParanoid:Q54G90 OMA:SATNQCK Uniprot:Q54G90
Length = 459
Score = 108 (43.1 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 26/78 (33%), Positives = 46/78 (58%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMD---IVALKTLKMRGQAFVIFKEIASATNALRSM 70
++++ + +T +L +IFS FG+I +V L T RG FV FK++ASA A+ SM
Sbjct: 101 LFISFLPATYTSDTLRSIFSAFGEIDSCRVMVDLNTGLSRGFGFVKFKDVASAQYAINSM 160
Query: 71 QGFPFYDKPMRIQYSKTD 88
G +K + ++++ +D
Sbjct: 161 NGAKVENKTLLVRFANSD 178
Score = 100 (40.3 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 27/104 (25%), Positives = 58/104 (55%)
Query: 10 VTNFVYVTHISSTDLKKSLYAIFSQFGQIMD---IVALKTLKMRGQAFVIFKEIASATNA 66
++N V++ + K L +FS +G++++ ++ + T RGQ V + + SA NA
Sbjct: 217 ISNNVFIRGLPIEFDKNQLSELFSAYGEVVESKLLIDITTNASRGQGLVRYIDTQSAINA 276
Query: 67 LRSMQGFPFYD--KPMRIQYSKTDSDVISKIKGTFMERPKKVRK 108
++S+ GF D KP+ ++++ + + K K +++ K+VR+
Sbjct: 277 VKSLNGFILQDPEKPLIVRFADNEDE--KKQKRQKLQQ-KQVRQ 317
Score = 51 (23.0 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 19/82 (23%), Positives = 38/82 (46%)
Query: 169 PPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAA 223
P N L++ NLP + + +L LF+ V++V ++ FV + S +
Sbjct: 381 PTN--LYVYNLPSDADDSLLYRLFSPCGAIASVKIVRDQTTQVCRGYGFVRMVSLADSYS 438
Query: 224 AKLALHGFKITPTHAMKISFAK 245
A +++G ++ + +SF K
Sbjct: 439 AINSINGVQVGGK-TISVSFKK 459
Score = 49 (22.3 bits), Expect = 6.2e-05, Sum P(2) = 6.2e-05
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 162 TAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLV 204
T + EQ + +F+ LP E + LS LF+ + E +L+
Sbjct: 209 TNNIDEQKISNNVFIRGLPIEFDKNQLSELFSAYGEVVESKLL 251
>UNIPROTKB|I3LP39 [details] [associations]
symbol:LOC100515203 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 EMBL:FP085536 EMBL:CU137694
Ensembl:ENSSSCT00000024275 Uniprot:I3LP39
Length = 405
Score = 95 (38.5 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 21/78 (26%), Positives = 38/78 (48%)
Query: 169 PPNQILFLTNLPEETSEMMLSMLFNQFPG-FKEVRLVPNRHDIAFVEFENEMQSAAAKLA 227
PP+ L L+N+P +E L LF G K + H +A ++ ++ A +
Sbjct: 325 PPSATLHLSNIPPSVAEEDLRTLFANTGGTVKAFKFFQRDHKMALLQMATVEEAIQALID 384
Query: 228 LHGFKITPTHAMKISFAK 245
LH + + H +++SF+K
Sbjct: 385 LHNYNLGENHHLRVSFSK 402
Score = 65 (27.9 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 18/61 (29%), Positives = 33/61 (54%)
Query: 28 LYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK--PMRIQYS 85
L+ IFS+FG ++ I+ T + QA + + + +A A ++ G Y+ +RI +S
Sbjct: 53 LHQIFSKFGAVLKIITF-TKNNQFQALLQYGDPVNAQQAKLALDGQNIYNACCTLRIDFS 111
Query: 86 K 86
K
Sbjct: 112 K 112
>UNIPROTKB|I3LDE4 [details] [associations]
symbol:LOC100515203 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:2000177 "regulation of neural precursor cell
proliferation" evidence=IEA] [GO:0033119 "negative regulation of
RNA splicing" evidence=IEA] [GO:0006376 "mRNA splice site
selection" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508
OMA:QSQLAMS EMBL:FP085536 EMBL:CU137694 Ensembl:ENSSSCT00000022271
Uniprot:I3LDE4
Length = 411
Score = 95 (38.5 bits), Expect = 4.3e-05, Sum P(2) = 4.3e-05
Identities = 21/78 (26%), Positives = 38/78 (48%)
Query: 169 PPNQILFLTNLPEETSEMMLSMLFNQFPG-FKEVRLVPNRHDIAFVEFENEMQSAAAKLA 227
PP+ L L+N+P +E L LF G K + H +A ++ ++ A +
Sbjct: 331 PPSATLHLSNIPPSVAEEDLRTLFANTGGTVKAFKFFQRDHKMALLQMATVEEAIQALID 390
Query: 228 LHGFKITPTHAMKISFAK 245
LH + + H +++SF+K
Sbjct: 391 LHNYNLGENHHLRVSFSK 408
Score = 65 (27.9 bits), Expect = 4.3e-05, Sum P(2) = 4.3e-05
Identities = 18/61 (29%), Positives = 33/61 (54%)
Query: 28 LYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK--PMRIQYS 85
L+ IFS+FG ++ I+ T + QA + + + +A A ++ G Y+ +RI +S
Sbjct: 54 LHQIFSKFGAVLKIITF-TKNNQFQALLQYGDPVNAQQAKLALDGQNIYNACCTLRIDFS 112
Query: 86 K 86
K
Sbjct: 113 K 113
>ZFIN|ZDB-GENE-060810-49 [details] [associations]
symbol:ptbp2b "polypyrimidine tract binding protein
2b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-060810-49 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508 KO:K14948
HOVERGEN:HBG069548 eggNOG:NOG263741 HOGENOM:HOG000231699
OrthoDB:EOG4GMTXQ EMBL:BX005269 IPI:IPI00855280
RefSeq:NP_001093477.1 UniGene:Dr.75530 SMR:A5PM68
Ensembl:ENSDART00000038648 GeneID:562434 KEGG:dre:562434 CTD:562434
OMA:YTAVTPQ NextBio:20884409 Uniprot:A5PM68
Length = 538
Score = 89 (36.4 bits), Expect = 4.4e-05, Sum P(2) = 4.4e-05
Identities = 20/78 (25%), Positives = 42/78 (53%)
Query: 169 PPNQILFLTNLPEETSEMMLSMLFNQFPG-FKEVRLVPNRHDIAFVEFENEMQSAAAKLA 227
PP+ L L+N+P+ +E L +LF+ G K + +R ++ ++ ++ A +
Sbjct: 459 PPSATLHLSNIPDNVTEEDLRLLFSNSGGTVKAFKFFQDRK-MSLLQMATAEEAIQALID 517
Query: 228 LHGFKITPTHAMKISFAK 245
LH + + H +++SF+K
Sbjct: 518 LHNYDMGRGHRLRVSFSK 535
Score = 75 (31.5 bits), Expect = 4.4e-05, Sum P(2) = 4.4e-05
Identities = 28/93 (30%), Positives = 43/93 (46%)
Query: 28 LYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK--PMRIQYS 85
L IFS+FG +M I+ T + QA + F + +A A S+ G Y+ +RI +S
Sbjct: 191 LQQIFSKFGTVMKIITF-TKNNQFQALLQFSDPVNAQQAKLSLDGQNIYNSCCTLRIDFS 249
Query: 86 K-TDSDV-ISKIKGTFMERPKKVRKQPAPVEDP 116
K + +V + K RP+ P DP
Sbjct: 250 KLVNLNVKYNNDKSRDYTRPELPAGDGQPPVDP 282
>GENEDB_PFALCIPARUM|PFF0320c [details] [associations]
symbol:PFF0320c "polypyrimidine tract binding
protein, putative" species:5833 "Plasmodium falciparum" [GO:0008187
"poly-pyrimidine tract binding" evidence=ISS] [GO:0008380 "RNA
splicing" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0008380 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:AL844505 GO:GO:0008187 RefSeq:XP_966055.1
ProteinModelPortal:C6KSR3 EnsemblProtists:PFF0320c:mRNA
GeneID:3885785 KEGG:pfa:PFF0320c EuPathDB:PlasmoDB:PF3D7_0606500
HOGENOM:HOG000281449 OMA:DATENEI ProtClustDB:CLSZ2432274
Uniprot:C6KSR3
Length = 663
Score = 95 (38.5 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
Identities = 23/80 (28%), Positives = 41/80 (51%)
Query: 170 PNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVP----NRHDIAFVEFENEMQSAAAK 225
P + LF++NL E +E + LFN++ +++ +P RH VE E + A
Sbjct: 581 PTKCLFISNLNENVNEDCVMNLFNKYGNINKLQFLPVKEGKRHLSIIVEMNTEDMATKAL 640
Query: 226 LALHGFKITPTHAMKISFAK 245
+ LH F + + +K+S+ K
Sbjct: 641 MDLHNFYLKDRY-IKVSYTK 659
Score = 70 (29.7 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
Identities = 17/60 (28%), Positives = 30/60 (50%)
Query: 28 LYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYD--KPMRIQYS 85
+Y +FS+ G + I+ + QA V F + +A A++++ YD + IQYS
Sbjct: 334 IYYLFSKCGTVEKIITFSRNPVLYQALVQFDNVETAKEAIKTLHNRNIYDGCNTINIQYS 393
>UNIPROTKB|C6KSR3 [details] [associations]
symbol:PFF0320c "Polypyrimidine tract binding protein,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0008187
"poly-pyrimidine tract binding" evidence=ISS] [GO:0008380 "RNA
splicing" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0008380 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:AL844505 GO:GO:0008187 RefSeq:XP_966055.1
ProteinModelPortal:C6KSR3 EnsemblProtists:PFF0320c:mRNA
GeneID:3885785 KEGG:pfa:PFF0320c EuPathDB:PlasmoDB:PF3D7_0606500
HOGENOM:HOG000281449 OMA:DATENEI ProtClustDB:CLSZ2432274
Uniprot:C6KSR3
Length = 663
Score = 95 (38.5 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
Identities = 23/80 (28%), Positives = 41/80 (51%)
Query: 170 PNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVP----NRHDIAFVEFENEMQSAAAK 225
P + LF++NL E +E + LFN++ +++ +P RH VE E + A
Sbjct: 581 PTKCLFISNLNENVNEDCVMNLFNKYGNINKLQFLPVKEGKRHLSIIVEMNTEDMATKAL 640
Query: 226 LALHGFKITPTHAMKISFAK 245
+ LH F + + +K+S+ K
Sbjct: 641 MDLHNFYLKDRY-IKVSYTK 659
Score = 70 (29.7 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
Identities = 17/60 (28%), Positives = 30/60 (50%)
Query: 28 LYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYD--KPMRIQYS 85
+Y +FS+ G + I+ + QA V F + +A A++++ YD + IQYS
Sbjct: 334 IYYLFSKCGTVEKIITFSRNPVLYQALVQFDNVETAKEAIKTLHNRNIYDGCNTINIQYS 393
>UNIPROTKB|H0YBU9 [details] [associations]
symbol:RBPMS "RNA-binding protein with multiple-splicing"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:19097 ChiTaRS:RBPMS EMBL:AC102945 EMBL:AC011204
EMBL:AC109329 Ensembl:ENST00000519359 Uniprot:H0YBU9
Length = 119
Score = 99 (39.9 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 22/75 (29%), Positives = 42/75 (56%)
Query: 174 LFLTNLPEETSEMMLSMLFNQFPGFKEVRL-VPNRHDIAFVEFENEMQSAAAKLALHGFK 232
LF++ LP + L +LF F G++ + + ++ + FV F++ ++ AAK AL+G +
Sbjct: 2 LFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQPVGFVSFDSRSEAEAAKNALNGIR 61
Query: 233 ITPT--HAMKISFAK 245
P +++ FAK
Sbjct: 62 FDPEIPQTLRLEFAK 76
>UNIPROTKB|H0YEY9 [details] [associations]
symbol:RNPC3 "RNA-binding protein 40" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BX322653
EMBL:AC095032 EMBL:AC105272 HGNC:HGNC:18666 ChiTaRS:RNPC3
Ensembl:ENST00000531127 Uniprot:H0YEY9
Length = 128
Score = 99 (39.9 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 26/74 (35%), Positives = 40/74 (54%)
Query: 18 HISSTDLKKSL--YAIFSQFGQ-IM-DIVALKTLKMRGQAFVIFKEIASATNALRSMQGF 73
H+ DLK Y FS Q IM DI +K +M+GQAF+ +A AL+ G+
Sbjct: 41 HVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGY 100
Query: 74 PFYDKPMRIQYSKT 87
+ KPM +Q++++
Sbjct: 101 VLFGKPMVVQFARS 114
>UNIPROTKB|H3BR27 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 HGNC:HGNC:9910
ChiTaRS:RBMX SMR:H3BR27 Ensembl:ENST00000464781
Ensembl:ENST00000568578 Uniprot:H3BR27
Length = 78
Score = 99 (39.9 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 23/69 (33%), Positives = 42/69 (60%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVALK---TLKMRGQAFVIFKEIASATNALRSM 70
+++ +++ +K+L A+F ++G+I++++ +K T K RG AFV F+ A A +A R M
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 71 QGFPFYDKP 79
G D P
Sbjct: 70 NGKMTVDIP 78
>RGD|1561067 [details] [associations]
symbol:Rbpms "RNA binding protein with multiple splicing"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003713 "transcription coactivator activity"
evidence=IEA;ISO] [GO:0008143 "poly(A) RNA binding"
evidence=IEA;ISO] [GO:0010862 "positive regulation of
pathway-restricted SMAD protein phosphorylation" evidence=IEA;ISO]
[GO:0060391 "positive regulation of SMAD protein import into
nucleus" evidence=IEA;ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1561067
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00500000044861 IPI:IPI00959368
Ensembl:ENSRNOT00000068011 Uniprot:F2Z3S5
Length = 110
Score = 99 (39.9 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 22/75 (29%), Positives = 42/75 (56%)
Query: 174 LFLTNLPEETSEMMLSMLFNQFPGFKEVRL-VPNRHDIAFVEFENEMQSAAAKLALHGFK 232
LF++ LP + L +LF F G++ + + ++ + FV F++ ++ AAK AL+G +
Sbjct: 4 LFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQPVGFVSFDSRSEAEAAKNALNGIR 63
Query: 233 ITPT--HAMKISFAK 245
P +++ FAK
Sbjct: 64 FDPEIPQTLRLEFAK 78
>UNIPROTKB|F1P5K0 [details] [associations]
symbol:PTBP1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508
EMBL:AADN02066656 EMBL:AADN02066657 EMBL:AADN02066658
EMBL:AADN02066659 IPI:IPI00571435 Ensembl:ENSGALT00000003039
ArrayExpress:F1P5K0 Uniprot:F1P5K0
Length = 527
Score = 89 (36.4 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
Identities = 20/78 (25%), Positives = 39/78 (50%)
Query: 169 PPNQILFLTNLPEETSEMMLSMLFNQFPGF-KEVRLVPNRHDIAFVEFENEMQSAAAKLA 227
PP+ L L+N+P +E L MLF+ G K + +A ++ + ++ + +
Sbjct: 447 PPSATLHLSNIPPSIAEEDLKMLFSSNGGMVKGFKFFQKDRKMALIQMGSVEEAIQSLID 506
Query: 228 LHGFKITPTHAMKISFAK 245
LH + H +++SF+K
Sbjct: 507 LHNHDLGENHHLRVSFSK 524
Score = 74 (31.1 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
Identities = 21/64 (32%), Positives = 35/64 (54%)
Query: 28 LYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK--PMRIQYS 85
L+ IFS+FG ++ I+ T + QA + + + SA +A S+ G Y+ +RI +S
Sbjct: 171 LHQIFSKFGTVLKIITF-TKNNQFQALLQYADPMSAQHAKLSLDGQNIYNACCTLRIDFS 229
Query: 86 KTDS 89
K S
Sbjct: 230 KLTS 233
>UNIPROTKB|E1BVR1 [details] [associations]
symbol:PTBP1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0036002 "pre-mRNA binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0051148 "negative regulation of
muscle cell differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0048025 GO:GO:0000381 GO:GO:0036002 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 OMA:SEECAQT GO:GO:0051148
EMBL:AADN02066656 EMBL:AADN02066657 EMBL:AADN02066658
EMBL:AADN02066659 IPI:IPI00684956 ProteinModelPortal:E1BVR1
Ensembl:ENSGALT00000003042 ArrayExpress:E1BVR1 Uniprot:E1BVR1
Length = 532
Score = 89 (36.4 bits), Expect = 5.4e-05, Sum P(2) = 5.4e-05
Identities = 20/78 (25%), Positives = 39/78 (50%)
Query: 169 PPNQILFLTNLPEETSEMMLSMLFNQFPGF-KEVRLVPNRHDIAFVEFENEMQSAAAKLA 227
PP+ L L+N+P +E L MLF+ G K + +A ++ + ++ + +
Sbjct: 452 PPSATLHLSNIPPSIAEEDLKMLFSSNGGMVKGFKFFQKDRKMALIQMGSVEEAIQSLID 511
Query: 228 LHGFKITPTHAMKISFAK 245
LH + H +++SF+K
Sbjct: 512 LHNHDLGENHHLRVSFSK 529
Score = 74 (31.1 bits), Expect = 5.4e-05, Sum P(2) = 5.4e-05
Identities = 21/64 (32%), Positives = 35/64 (54%)
Query: 28 LYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK--PMRIQYS 85
L+ IFS+FG ++ I+ T + QA + + + SA +A S+ G Y+ +RI +S
Sbjct: 176 LHQIFSKFGTVLKIITF-TKNNQFQALLQYADPMSAQHAKLSLDGQNIYNACCTLRIDFS 234
Query: 86 KTDS 89
K S
Sbjct: 235 KLTS 238
>DICTYBASE|DDB_G0286297 [details] [associations]
symbol:DDB_G0286297 "putative splicing factor 3B 14
kDa subunit" species:44689 "Dictyostelium discoideum" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0286297 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000085 eggNOG:COG0724
KO:K12833 OMA:YQSTKAF RefSeq:XP_637842.1 ProteinModelPortal:Q54LY9
SMR:Q54LY9 STRING:Q54LY9 EnsemblProtists:DDB0233775 GeneID:8625556
KEGG:ddi:DDB_G0286297 InParanoid:Q54LY9 Uniprot:Q54LY9
Length = 117
Score = 98 (39.6 bits), Expect = 6.4e-05, P = 6.4e-05
Identities = 21/75 (28%), Positives = 38/75 (50%)
Query: 10 VTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+ +YV ++ + LY IFS +G I I T + G AFV++++I A NA
Sbjct: 14 INRILYVKNLPFKISSEELYGIFSNYGAIRQIRLGNTTETMGTAFVVYEDIFDARNACEH 73
Query: 70 MQGFPFYDKPMRIQY 84
+ G+ ++ + + Y
Sbjct: 74 LSGYNVNNRYLVVLY 88
>SGD|S000000323 [details] [associations]
symbol:MUD1 "U1 snRNP A protein" species:4932 "Saccharomyces
cerevisiae" [GO:0008380 "RNA splicing" evidence=IEA] [GO:0071004
"U2-type prespliceosome" evidence=IDA] [GO:0030619 "U1 snRNA
binding" evidence=IPI] [GO:0003723 "RNA binding"
evidence=IEA;IGI;ISS] [GO:0017069 "snRNA binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA;IGI]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005685 "U1 snRNP" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SGD:S000000323
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BK006936 EMBL:X78993
GO:GO:0000398 eggNOG:COG0724 GO:GO:0071004 GO:GO:0005685
PANTHER:PTHR10501 GO:GO:0030619 OrthoDB:EOG4TB7MX EMBL:X71061
EMBL:Z35988 PIR:A46301 RefSeq:NP_009677.1 ProteinModelPortal:P32605
SMR:P32605 DIP:DIP-223N IntAct:P32605 MINT:MINT-525465
STRING:P32605 PaxDb:P32605 EnsemblFungi:YBR119W GeneID:852416
KEGG:sce:YBR119W CYGD:YBR119w HOGENOM:HOG000142015 OMA:SHELAQS
NextBio:971273 Genevestigator:P32605 GermOnline:YBR119W
Uniprot:P32605
Length = 298
Score = 111 (44.1 bits), Expect = 8.2e-05, Sum P(2) = 8.2e-05
Identities = 28/79 (35%), Positives = 41/79 (51%)
Query: 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKL 226
E PPN++L + NLP T+E +LS + E+RLV R+ +AFVE+E + K
Sbjct: 222 ENPPNKVLLIQNLPSGTTEQLLSQILGN-EALVEIRLVSVRN-LAFVEYETVADATKIKN 279
Query: 227 ALHGFKITPTHAMKISFAK 245
L + + I FAK
Sbjct: 280 QLGSTYKLQNNDVTIGFAK 298
Score = 38 (18.4 bits), Expect = 8.2e-05, Sum P(2) = 8.2e-05
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 28 LYAIFSQFGQIMDIVALKTLKMRGQAFVIF 57
L + Q G ++++ ++ KM QAF+ F
Sbjct: 53 LMLLDDQMG-LLEVSISRSSKMTNQAFLTF 81
>UNIPROTKB|K7GMF5 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000032763 Uniprot:K7GMF5
Length = 80
Score = 97 (39.2 bits), Expect = 8.3e-05, P = 8.3e-05
Identities = 21/62 (33%), Positives = 40/62 (64%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVALK---TLKMRGQAFVIFKEIASATNALRSM 70
+++ +++ +K+L A+F ++G+I++++ +K T K RG AFV F+ A A +A R M
Sbjct: 12 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 71
Query: 71 QG 72
G
Sbjct: 72 NG 73
>UNIPROTKB|K7GQ39 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000033155 Uniprot:K7GQ39
Length = 101
Score = 97 (39.2 bits), Expect = 8.3e-05, P = 8.3e-05
Identities = 21/62 (33%), Positives = 40/62 (64%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVALK---TLKMRGQAFVIFKEIASATNALRSM 70
+++ +++ +K+L A+F ++G+I++++ +K T K RG AFV F+ A A +A R M
Sbjct: 12 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 71
Query: 71 QG 72
G
Sbjct: 72 NG 73
>UNIPROTKB|E2RSK4 [details] [associations]
symbol:PTBP2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:2000177 "regulation of neural precursor cell
proliferation" evidence=IEA] [GO:0033119 "negative regulation of
RNA splicing" evidence=IEA] [GO:0006376 "mRNA splice site
selection" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0033119 GO:GO:0006376 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 OMA:QSQLAMS EMBL:AAEX03004787
EMBL:AAEX03004788 EMBL:AAEX03004789 EMBL:AAEX03004790
ProteinModelPortal:E2RSK4 PRIDE:E2RSK4 Ensembl:ENSCAFT00000031985
Uniprot:E2RSK4
Length = 532
Score = 95 (38.5 bits), Expect = 8.6e-05, Sum P(2) = 8.6e-05
Identities = 21/78 (26%), Positives = 38/78 (48%)
Query: 169 PPNQILFLTNLPEETSEMMLSMLFNQFPG-FKEVRLVPNRHDIAFVEFENEMQSAAAKLA 227
PP+ L L+N+P +E L LF G K + H +A ++ ++ A +
Sbjct: 452 PPSATLHLSNIPPSVAEEDLRTLFANTGGTVKAFKFFQRDHKMALLQMATVEEAIQALID 511
Query: 228 LHGFKITPTHAMKISFAK 245
LH + + H +++SF+K
Sbjct: 512 LHNYNLGENHHLRVSFSK 529
Score = 65 (27.9 bits), Expect = 8.6e-05, Sum P(2) = 8.6e-05
Identities = 18/61 (29%), Positives = 33/61 (54%)
Query: 28 LYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK--PMRIQYS 85
L+ IFS+FG ++ I+ T + QA + + + +A A ++ G Y+ +RI +S
Sbjct: 197 LHQIFSKFGAVLKIITF-TKNNQFQALLQYGDPVNAQQAKLALDGQNIYNACCTLRIDFS 255
Query: 86 K 86
K
Sbjct: 256 K 256
>UNIPROTKB|E1BW94 [details] [associations]
symbol:SF3B14 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005689
"U12-type spliceosomal complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005689
KO:K12833 OMA:YQSTKAF GeneTree:ENSGT00390000005908 CTD:51639
EMBL:AADN02018477 IPI:IPI00572573 RefSeq:XP_419986.1
UniGene:Gga.2001 ProteinModelPortal:E1BW94 SMR:E1BW94 PRIDE:E1BW94
Ensembl:ENSGALT00000026618 GeneID:421976 KEGG:gga:421976
NextBio:20824670 Uniprot:E1BW94
Length = 125
Score = 96 (38.9 bits), Expect = 0.00011, P = 0.00011
Identities = 26/108 (24%), Positives = 50/108 (46%)
Query: 10 VTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
V +Y+ ++ + +Y IF ++G I I T + RG A+V++++I A NA
Sbjct: 17 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDH 76
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVE-DP 116
+ GF ++ + + Y + K+ E K+ K+ + DP
Sbjct: 77 LSGFNVCNRYLVVLYYNANR-AFQKMDTKKKEEQLKLLKEKYGINTDP 123
>UNIPROTKB|Q2KIQ7 [details] [associations]
symbol:SF3B14 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GO:GO:0005689 KO:K12833 OMA:YQSTKAF
GeneTree:ENSGT00390000005908 CTD:51639 HOVERGEN:HBG039634
OrthoDB:EOG4X0MTT EMBL:DAAA02031677 EMBL:BC112548 IPI:IPI00698072
RefSeq:NP_001039482.1 UniGene:Bt.45988 SMR:Q2KIQ7 STRING:Q2KIQ7
Ensembl:ENSBTAT00000004418 GeneID:508876 KEGG:bta:508876
InParanoid:Q2KIQ7 NextBio:20868714 Uniprot:Q2KIQ7
Length = 125
Score = 96 (38.9 bits), Expect = 0.00011, P = 0.00011
Identities = 26/108 (24%), Positives = 50/108 (46%)
Query: 10 VTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
V +Y+ ++ + +Y IF ++G I I T + RG A+V++++I A NA
Sbjct: 17 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDH 76
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVE-DP 116
+ GF ++ + + Y + K+ E K+ K+ + DP
Sbjct: 77 LSGFNVCNRYLVVLYYNANR-AFQKMDTKKKEEQLKLLKEKYGINTDP 123
>UNIPROTKB|E2RRA3 [details] [associations]
symbol:SF3B14 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005689
KO:K12833 OMA:YQSTKAF GeneTree:ENSGT00390000005908 CTD:51639
EMBL:AAEX03010780 RefSeq:XP_532889.1 ProteinModelPortal:E2RRA3
SMR:E2RRA3 PRIDE:E2RRA3 Ensembl:ENSCAFT00000006355 GeneID:475682
KEGG:cfa:475682 NextBio:20851470 Uniprot:E2RRA3
Length = 125
Score = 96 (38.9 bits), Expect = 0.00011, P = 0.00011
Identities = 26/108 (24%), Positives = 50/108 (46%)
Query: 10 VTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
V +Y+ ++ + +Y IF ++G I I T + RG A+V++++I A NA
Sbjct: 17 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDH 76
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVE-DP 116
+ GF ++ + + Y + K+ E K+ K+ + DP
Sbjct: 77 LSGFNVCNRYLVVLYYNANR-AFQKMDTKKKEEQLKLLKEKYGINTDP 123
>UNIPROTKB|Q9Y3B4 [details] [associations]
symbol:SF3B14 "Pre-mRNA branch site protein p14"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005689
"U12-type spliceosomal complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005654 GO:GO:0000166 Reactome:REACT_1675
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398 eggNOG:COG0724
HOGENOM:HOG000276232 GO:GO:0005689 KO:K12833 OMA:YQSTKAF
EMBL:AF401310 EMBL:AF151868 EMBL:AF161523 EMBL:AF184213
EMBL:BC015463 IPI:IPI00032827 RefSeq:NP_057131.1 UniGene:Hs.177861
PDB:2F9D PDB:2F9J PDB:2FHO PDB:3LQV PDBsum:2F9D PDBsum:2F9J
PDBsum:2FHO PDBsum:3LQV ProteinModelPortal:Q9Y3B4 SMR:Q9Y3B4
IntAct:Q9Y3B4 MINT:MINT-3085643 STRING:Q9Y3B4 PhosphoSite:Q9Y3B4
DMDM:12585536 PaxDb:Q9Y3B4 PeptideAtlas:Q9Y3B4 PRIDE:Q9Y3B4
DNASU:51639 GeneID:51639 KEGG:hsa:51639 UCSC:uc002rev.3 CTD:51639
GeneCards:GC02M024290 HPA:HPA034829 HPA:HPA034830 MIM:607835
neXtProt:NX_Q9Y3B4 HOVERGEN:HBG039634 InParanoid:Q9Y3B4
OrthoDB:EOG4X0MTT PhylomeDB:Q9Y3B4 EvolutionaryTrace:Q9Y3B4
GenomeRNAi:51639 NextBio:55577 ArrayExpress:Q9Y3B4 Bgee:Q9Y3B4
Genevestigator:Q9Y3B4 GermOnline:ENSG00000115128 Uniprot:Q9Y3B4
Length = 125
Score = 96 (38.9 bits), Expect = 0.00011, P = 0.00011
Identities = 26/108 (24%), Positives = 50/108 (46%)
Query: 10 VTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
V +Y+ ++ + +Y IF ++G I I T + RG A+V++++I A NA
Sbjct: 17 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDH 76
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVE-DP 116
+ GF ++ + + Y + K+ E K+ K+ + DP
Sbjct: 77 LSGFNVCNRYLVVLYYNANR-AFQKMDTKKKEEQLKLLKEKYGINTDP 123
>UNIPROTKB|F2Z5F1 [details] [associations]
symbol:LOC100521960 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005689
KO:K12833 OMA:YQSTKAF GeneTree:ENSGT00390000005908 EMBL:CU928810
RefSeq:XP_003125412.1 ProteinModelPortal:F2Z5F1 SMR:F2Z5F1
PRIDE:F2Z5F1 Ensembl:ENSSSCT00000009397 GeneID:100521960
KEGG:ssc:100521960 Uniprot:F2Z5F1
Length = 125
Score = 96 (38.9 bits), Expect = 0.00011, P = 0.00011
Identities = 26/108 (24%), Positives = 50/108 (46%)
Query: 10 VTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
V +Y+ ++ + +Y IF ++G I I T + RG A+V++++I A NA
Sbjct: 17 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDH 76
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVE-DP 116
+ GF ++ + + Y + K+ E K+ K+ + DP
Sbjct: 77 LSGFNVCNRYLVVLYYNANR-AFQKMDTKKKEEQLKLLKEKYGINTDP 123
>MGI|MGI:1913305 [details] [associations]
symbol:0610009D07Rik "RIKEN cDNA 0610009D07 gene"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005689 "U12-type spliceosomal complex" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1913305
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000276232 GO:GO:0005689
KO:K12833 OMA:YQSTKAF GeneTree:ENSGT00390000005908
HOVERGEN:HBG039634 OrthoDB:EOG4X0MTT EMBL:AK002375 EMBL:AK003683
EMBL:AK151648 EMBL:BC019535 IPI:IPI00117687 RefSeq:NP_079599.1
UniGene:Mm.102627 ProteinModelPortal:P59708 SMR:P59708
STRING:P59708 PhosphoSite:P59708 PaxDb:P59708 PRIDE:P59708
Ensembl:ENSMUST00000046207 GeneID:66055 KEGG:mmu:66055
UCSC:uc007myi.1 InParanoid:P59708 NextBio:320494 Bgee:P59708
CleanEx:MM_0610009D07RIK Genevestigator:P59708
GermOnline:ENSMUSG00000037361 Uniprot:P59708
Length = 125
Score = 96 (38.9 bits), Expect = 0.00011, P = 0.00011
Identities = 26/108 (24%), Positives = 50/108 (46%)
Query: 10 VTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
V +Y+ ++ + +Y IF ++G I I T + RG A+V++++I A NA
Sbjct: 17 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDH 76
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVE-DP 116
+ GF ++ + + Y + K+ E K+ K+ + DP
Sbjct: 77 LSGFNVCNRYLVVLYYNANR-AFQKMDTKKKEEQLKLLKEKYGINTDP 123
>ZFIN|ZDB-GENE-040625-36 [details] [associations]
symbol:sf3b14 "splicing factor 3B" species:7955
"Danio rerio" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040625-36 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232 KO:K12833
OMA:YQSTKAF GeneTree:ENSGT00390000005908 CTD:51639
HOVERGEN:HBG039634 OrthoDB:EOG4X0MTT EMBL:BX510920 EMBL:BC071385
IPI:IPI00495681 RefSeq:NP_001002067.1 UniGene:Dr.3658 SMR:Q6IQM0
STRING:Q6IQM0 Ensembl:ENSDART00000017485 GeneID:415157
KEGG:dre:415157 InParanoid:Q6IQM0 NextBio:20818830 Uniprot:Q6IQM0
Length = 125
Score = 96 (38.9 bits), Expect = 0.00011, P = 0.00011
Identities = 26/108 (24%), Positives = 50/108 (46%)
Query: 10 VTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
V +Y+ ++ + +Y IF ++G I I T + RG A+V++++I A NA
Sbjct: 17 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDH 76
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVE-DP 116
+ GF ++ + + Y + K+ E K+ K+ + DP
Sbjct: 77 LSGFNVCNRYLVVLYYNANR-AFQKMDTKKKEEQLKLLKEKYGINTDP 123
>UNIPROTKB|K7ENX8 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000589266 Uniprot:K7ENX8
Length = 89
Score = 95 (38.5 bits), Expect = 0.00014, P = 0.00014
Identities = 23/72 (31%), Positives = 42/72 (58%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVALK---TLKMRGQAFVIFKEIASATNALRSM 70
++V +S ++SL +FS++GQI ++V +K T + RG FV F+ I A +A+ +M
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 71 QGFPFYDKPMRI 82
G + +R+
Sbjct: 68 NGKSVDGRQIRV 79
>TAIR|locus:2079502 [details] [associations]
symbol:RS31 "arginine/serine-rich splicing factor 31"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=NAS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IDA;RCA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=RCA] [GO:0043687 "post-translational
protein modification" evidence=RCA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0005681 "spliceosomal complex" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166 GO:GO:0016607
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0000398
EMBL:AL138642 HOGENOM:HOG000276234 KO:K12893 EMBL:X99435
EMBL:AF439831 EMBL:AY125565 IPI:IPI00530595 PIR:T47978 PIR:T51304
RefSeq:NP_567120.1 UniGene:At.24231 ProteinModelPortal:P92964
SMR:P92964 IntAct:P92964 STRING:P92964 PaxDb:P92964 PRIDE:P92964
EnsemblPlants:AT3G61860.1 GeneID:825359 KEGG:ath:AT3G61860
TAIR:At3g61860 eggNOG:NOG277933 InParanoid:P92964 OMA:FEYETRQ
PhylomeDB:P92964 ProtClustDB:CLSN2917489 Genevestigator:P92964
GermOnline:AT3G61860 Uniprot:P92964
Length = 264
Score = 89 (36.4 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 27/81 (33%), Positives = 48/81 (59%)
Query: 8 ICVTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNAL 67
+ V NF Y T S DL++ +F ++G++ D V +K+ G AFV F++ A +A+
Sbjct: 4 VFVGNFEYETRQS--DLER----LFDKYGRV-DRVDMKS----GYAFVYFEDERDAEDAI 52
Query: 68 RSMQGFPF-YDKP-MRIQYSK 86
R + FPF Y+K + ++++K
Sbjct: 53 RKLDNFPFGYEKRRLSVEWAK 73
Score = 61 (26.5 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 21/78 (26%), Positives = 34/78 (43%)
Query: 170 PNQILFLTNL-PEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLAL 228
P + LF+ N P T E + F + VR+ R + +FV+FE + + A A
Sbjct: 91 PTKTLFVINFDPIRTKEHDIEKHFEPYGKVTNVRI---RRNFSFVQFETQEDATKALEAT 147
Query: 229 HGFKITPTHAMKISFAKK 246
KI + + +A K
Sbjct: 148 QRSKILD-RVVSVEYALK 164
>UNIPROTKB|K7ELV6 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588344 Uniprot:K7ELV6
Length = 70
Score = 94 (38.1 bits), Expect = 0.00018, P = 0.00018
Identities = 22/62 (35%), Positives = 38/62 (61%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVALK---TLKMRGQAFVIFKEIASATNALRSM 70
++V +S ++SL +FS++GQI ++V +K T + RG FV F+ I A +A+ +M
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 71 QG 72
G
Sbjct: 68 NG 69
>UNIPROTKB|I3LLT9 [details] [associations]
symbol:ZCRB1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005689
GeneTree:ENSGT00600000084414 EMBL:CU915556
Ensembl:ENSSSCT00000027399 OMA:SINGKEM Uniprot:I3LLT9
Length = 94
Score = 94 (38.1 bits), Expect = 0.00018, P = 0.00018
Identities = 20/60 (33%), Positives = 37/60 (61%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVALK---TLKMRGQAFVIFKEIASATNALRSM 70
VYV+++ + LY IFS++G+++ + +K T K +G AF++F + SA N R++
Sbjct: 12 VYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAI 71
>WB|WBGene00004315 [details] [associations]
symbol:rbd-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0018996
"molting cycle, collagen and cuticulin-based cuticle" evidence=IMP]
[GO:0008406 "gonad development" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0006396
"RNA processing" evidence=IMP] [GO:0040039 "inductive cell
migration" evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0000478 "endonucleolytic cleavage involved in rRNA processing"
evidence=IMP] [GO:0040025 "vulval development" evidence=IMP]
[GO:0040002 "collagen and cuticulin-based cuticle development"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0040007 GO:GO:0040010
GO:GO:0005730 GO:GO:0008406 GO:GO:0000166 GO:GO:0018996
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040035 GO:GO:0040039
HSSP:P19339 GO:GO:0040002 GO:GO:0040025 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV GeneTree:ENSGT00700000104575
GO:GO:0000478 EMBL:Z83127 PIR:T25186 RefSeq:NP_502432.1
ProteinModelPortal:Q9XU67 SMR:Q9XU67 DIP:DIP-26131N
MINT:MINT-1105789 STRING:Q9XU67 PaxDb:Q9XU67
EnsemblMetazoa:T23F6.4.1 EnsemblMetazoa:T23F6.4.2 GeneID:178229
KEGG:cel:CELE_T23F6.4 UCSC:T23F6.4.1 CTD:178229 WormBase:T23F6.4
InParanoid:Q9XU67 NextBio:900268 Uniprot:Q9XU67
Length = 872
Score = 91 (37.1 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 29/84 (34%), Positives = 45/84 (53%)
Query: 10 VTNFVYVTHISSTDLKKSLYAIFSQFGQIMD--IVALKTLKMRGQAFVIFKEIASATNAL 67
+T + V ++ ST ++ L F ++GQI D + K K RG AFV F + SA+NAL
Sbjct: 1 MTTRLIVKNLPSTCTEQQLRKFFEKYGQISDASLKYTKEGKFRGFAFVGFLDEGSASNAL 60
Query: 68 -RSMQGFPFYDKPMRIQYSKTDSD 90
+S Q F F K + ++ + D
Sbjct: 61 AKSNQTF-FNSKKLTVEECRPFGD 83
Score = 71 (30.1 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 23/63 (36%), Positives = 31/63 (49%)
Query: 174 LFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHD-----IAFVEFENEMQSAAAKLAL 228
LFL NLP T E L LF ++ EV++V ++ A VEF + AA AL
Sbjct: 281 LFLRNLPYATKEDDLQFLFKKYGEVSEVQVVIDKKTGACKGFAIVEFVFPEAAVAAYSAL 340
Query: 229 HGF 231
G+
Sbjct: 341 DGY 343
>TAIR|locus:2009036 [details] [associations]
symbol:PAB1 "poly(A) binding protein 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K13126 IPI:IPI00540782 RefSeq:NP_174676.2 UniGene:At.51928
ProteinModelPortal:F4HT49 SMR:F4HT49 PRIDE:F4HT49
EnsemblPlants:AT1G34140.1 GeneID:840313 KEGG:ath:AT1G34140
OMA:VLSIRIC ArrayExpress:F4HT49 Uniprot:F4HT49
Length = 407
Score = 90 (36.7 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 28/99 (28%), Positives = 47/99 (47%)
Query: 11 TNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL--KMRGQAFVIFKEIASATNALR 68
TN VYV ++ T L +F +FG+I V +K K R FV F++ +A A+
Sbjct: 119 TN-VYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIE 177
Query: 69 SMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVR 107
M G +K + + ++ ++ +K F E K +R
Sbjct: 178 KMNGVVVDEKELHVGRAQRKTNRTEDLKAKF-ELEKIIR 215
Score = 64 (27.6 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 18/76 (23%), Positives = 38/76 (50%)
Query: 174 LFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIA----FVEFENEMQSAAAKLALH 229
L++ NL + L LF++F +++ + + I+ FVEF +++ A L ++
Sbjct: 225 LYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMN 284
Query: 230 GFKITPTHAMKISFAK 245
G K+ + +S A+
Sbjct: 285 G-KMVGNKPIYVSLAQ 299
>DICTYBASE|DDB_G0270634 [details] [associations]
symbol:DDB_G0270634 "putative splicing regulator"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0270634 EMBL:AAFI02000005 GO:GO:0045335
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
RefSeq:XP_646268.1 ProteinModelPortal:Q55D63
EnsemblProtists:DDB0233675 GeneID:8617224 KEGG:ddi:DDB_G0270634
InParanoid:Q55D63 OMA:CAFITFS ProtClustDB:CLSZ2497105
Uniprot:Q55D63
Length = 368
Score = 101 (40.6 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 27/88 (30%), Positives = 49/88 (55%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVALK---TLKMRGQAFVIFKEIASATNALRSM 70
V+V HI S+ ++ + IF++FG I+DI +K T +G AF+ F A NAL +
Sbjct: 20 VFVGHIPSSMNEEGVSQIFNKFGNILDITIIKDKRTNVSKGCAFITFSTKEEADNALNTT 79
Query: 71 -QGFPFYD---KPMRIQYSKTDSDVISK 94
+ F + KP++++YS + + + +
Sbjct: 80 NESGTFLENMNKPLQVKYSDNEIEKMER 107
Score = 49 (22.3 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 22/87 (25%), Positives = 38/87 (43%)
Query: 167 EQPPNQI--LFLTNLPEETSEMMLSMLFNQFPGF--KEVRLVPNRHD---IAFVEFENEM 219
+Q PN+ LF+ LP + L LF + +V + N FV ++N
Sbjct: 280 QQQPNESNDLFIYYLPFTYGDEELKQLFAPYGNVISSKVFIDKNTQQSKCFGFVSYDNTQ 339
Query: 220 QSAAAKLALHGFKITPTHAMKISFAKK 246
+ AA L+G I +K++F ++
Sbjct: 340 SAIAAIQELNGRAIEGKK-LKVNFKRE 365
>UNIPROTKB|F1S548 [details] [associations]
symbol:LOC100739008 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 EMBL:FP085536 RefSeq:XP_003481556.1
Ensembl:ENSSSCT00000007534 GeneID:100739008 KEGG:ssc:100739008
OMA:IQMSTIE Uniprot:F1S548
Length = 255
Score = 95 (38.5 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 21/78 (26%), Positives = 38/78 (48%)
Query: 169 PPNQILFLTNLPEETSEMMLSMLFNQFPG-FKEVRLVPNRHDIAFVEFENEMQSAAAKLA 227
PP+ L L+N+P +E L LF G K + H +A ++ ++ A +
Sbjct: 175 PPSATLHLSNIPPSVAEEDLRTLFANTGGTVKAFKFFQRDHKMALLQMATVEEAIQALID 234
Query: 228 LHGFKITPTHAMKISFAK 245
LH + + H +++SF+K
Sbjct: 235 LHNYNLGENHHLRVSFSK 252
Score = 50 (22.7 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 14/61 (22%), Positives = 27/61 (44%)
Query: 26 KSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYS 85
+SL+ +F +G + + L K A + + + A+ + G Y K +R+ S
Sbjct: 76 QSLFTLFGVYGDVQRVKILYNKK--DSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLS 133
Query: 86 K 86
K
Sbjct: 134 K 134
>UNIPROTKB|D4A7H6 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
Uniprot:D4A7H6
Length = 346
Score = 85 (35.0 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 27/106 (25%), Positives = 52/106 (49%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMD---IVALKTLKMRGQAFVIFKEIASATNALRSM 70
+YV+ + T +K L +FSQ+G+I+ +V T RG F+ F + A A++ +
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query: 71 QGF--PFYDKPMRIQYSKTDSDVISK-IKGTFMERPKKVRKQPAPV 113
G P +P+ ++++ S ++ I + P R+ P P+
Sbjct: 187 NGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPN--RRYPGPL 230
Score = 66 (28.3 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 21/90 (23%), Positives = 42/90 (46%)
Query: 160 MATAGVPEQP-PNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLV----PNR-HDIAFV 213
+A +P P +F+ NL + E +L +F F V+++ N+ FV
Sbjct: 250 LAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFV 309
Query: 214 EFENEMQSAAAKLALHGFKITPTHAMKISF 243
N ++A A +L+G+++ +++SF
Sbjct: 310 TMTNYDEAAMAIASLNGYRLGD-RVLQVSF 338
>UNIPROTKB|F1NF69 [details] [associations]
symbol:SART3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GO:GO:0006396 GeneTree:ENSGT00550000074656 EMBL:AADN02034959
EMBL:AADN02034960 EMBL:AADN02034961 EMBL:AADN02034962
EMBL:AADN02034963 IPI:IPI00577406 Ensembl:ENSGALT00000007806
ArrayExpress:F1NF69 Uniprot:F1NF69
Length = 772
Score = 95 (38.5 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 24/75 (32%), Positives = 41/75 (54%)
Query: 174 LFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR----HDIAFVEFENEMQSAAAKLALH 229
LF++ LP ++ L + K++RLV NR +A+VE+ENE Q++ A L +
Sbjct: 687 LFISGLPFSCTKEELEDICKAHGNVKDIRLVTNRAGKPKGLAYVEYENEAQASQAVLKMD 746
Query: 230 GFKITPTHAMKISFA 244
G I H +K++ +
Sbjct: 747 GLTIKE-HVIKVAIS 760
Score = 63 (27.2 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 21/74 (28%), Positives = 38/74 (51%)
Query: 14 VYVTHIS--STDLKKSLYAIFSQFGQIMDIVALKTLK--MRGQAFVIFKEIASATNAL-- 67
V+V+++S TD + L +F G++ + + + K RG +V FK+ SA AL
Sbjct: 590 VFVSNLSYNMTDPEVKLKELFESCGEVSQVRPVFSNKGTFRGYCYVEFKDEKSALQALGM 649
Query: 68 --RSMQGFPFYDKP 79
+ ++G P + P
Sbjct: 650 DRKVVEGRPMFVSP 663
>UNIPROTKB|Q12926 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
Ensembl:ENST00000380110 Ensembl:ENST00000380117
Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
Length = 359
Score = 85 (35.0 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 27/106 (25%), Positives = 52/106 (49%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMD---IVALKTLKMRGQAFVIFKEIASATNALRSM 70
+YV+ + T +K L +FSQ+G+I+ +V T RG F+ F + A A++ +
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query: 71 QGF--PFYDKPMRIQYSKTDSDVISK-IKGTFMERPKKVRKQPAPV 113
G P +P+ ++++ S ++ I + P R+ P P+
Sbjct: 187 NGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPN--RRYPGPL 230
Score = 66 (28.3 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 21/90 (23%), Positives = 42/90 (46%)
Query: 160 MATAGVPEQP-PNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLV----PNR-HDIAFV 213
+A +P P +F+ NL + E +L +F F V+++ N+ FV
Sbjct: 263 LAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFV 322
Query: 214 EFENEMQSAAAKLALHGFKITPTHAMKISF 243
N ++A A +L+G+++ +++SF
Sbjct: 323 TMTNYDEAAMAIASLNGYRLGD-RVLQVSF 351
>RGD|628611 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 85 (35.0 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 27/106 (25%), Positives = 52/106 (49%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMD---IVALKTLKMRGQAFVIFKEIASATNALRSM 70
+YV+ + T +K L +FSQ+G+I+ +V T RG F+ F + A A++ +
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query: 71 QGF--PFYDKPMRIQYSKTDSDVISK-IKGTFMERPKKVRKQPAPV 113
G P +P+ ++++ S ++ I + P R+ P P+
Sbjct: 187 NGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPN--RRYPGPL 230
Score = 66 (28.3 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 21/90 (23%), Positives = 42/90 (46%)
Query: 160 MATAGVPEQP-PNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLV----PNR-HDIAFV 213
+A +P P +F+ NL + E +L +F F V+++ N+ FV
Sbjct: 263 LAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFV 322
Query: 214 EFENEMQSAAAKLALHGFKITPTHAMKISF 243
N ++A A +L+G+++ +++SF
Sbjct: 323 TMTNYDEAAMAIASLNGYRLGD-RVLQVSF 351
>UNIPROTKB|Q8CH84 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 85 (35.0 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 27/106 (25%), Positives = 52/106 (49%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMD---IVALKTLKMRGQAFVIFKEIASATNALRSM 70
+YV+ + T +K L +FSQ+G+I+ +V T RG F+ F + A A++ +
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query: 71 QGF--PFYDKPMRIQYSKTDSDVISK-IKGTFMERPKKVRKQPAPV 113
G P +P+ ++++ S ++ I + P R+ P P+
Sbjct: 187 NGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPN--RRYPGPL 230
Score = 66 (28.3 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 21/90 (23%), Positives = 42/90 (46%)
Query: 160 MATAGVPEQP-PNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLV----PNR-HDIAFV 213
+A +P P +F+ NL + E +L +F F V+++ N+ FV
Sbjct: 263 LAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFV 322
Query: 214 EFENEMQSAAAKLALHGFKITPTHAMKISF 243
N ++A A +L+G+++ +++SF
Sbjct: 323 TMTNYDEAAMAIASLNGYRLGD-RVLQVSF 351
>MGI|MGI:1100887 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
GermOnline:ENSMUSG00000008489 Uniprot:Q60899
Length = 360
Score = 85 (35.0 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 27/106 (25%), Positives = 52/106 (49%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMD---IVALKTLKMRGQAFVIFKEIASATNALRSM 70
+YV+ + T +K L +FSQ+G+I+ +V T RG F+ F + A A++ +
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query: 71 QGF--PFYDKPMRIQYSKTDSDVISK-IKGTFMERPKKVRKQPAPV 113
G P +P+ ++++ S ++ I + P R+ P P+
Sbjct: 187 NGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPN--RRYPGPL 230
Score = 66 (28.3 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 21/90 (23%), Positives = 42/90 (46%)
Query: 160 MATAGVPEQP-PNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLV----PNR-HDIAFV 213
+A +P P +F+ NL + E +L +F F V+++ N+ FV
Sbjct: 264 LAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFV 323
Query: 214 EFENEMQSAAAKLALHGFKITPTHAMKISF 243
N ++A A +L+G+++ +++SF
Sbjct: 324 TMTNYDEAAMAIASLNGYRLGD-RVLQVSF 352
>UNIPROTKB|E1C240 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AADN02057847
EMBL:AADN02057848 EMBL:AADN02057849 EMBL:AADN02057850
IPI:IPI00584568 ProteinModelPortal:E1C240
Ensembl:ENSGALT00000025475 Uniprot:E1C240
Length = 388
Score = 90 (36.7 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 28/106 (26%), Positives = 52/106 (49%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMD---IVALKTLKMRGQAFVIFKEIASATNALRSM 70
+YV+ + T +K L +FSQ+G+I+ +V T RG F+ F + A A++ +
Sbjct: 155 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGMSRGVGFIRFDKRIEAEEAIKGL 214
Query: 71 QGF--PFYDKPMRIQYSKTDSDVISK-IKGTFMERPKKVRKQPAPV 113
G P +P+ ++++ S ++ I P R+ PAP+
Sbjct: 215 NGQKPPAATEPITVKFANNPSQKTNQAILSQLYHSPN--RRYPAPL 258
Score = 61 (26.5 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 18/75 (24%), Positives = 37/75 (49%)
Query: 174 LFLTNLPEETSEMMLSMLFNQFPGFKEVRLV----PNR-HDIAFVEFENEMQSAAAKLAL 228
+F+ NL + E +L +F F V+++ N+ FV N ++A A +L
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366
Query: 229 HGFKITPTHAMKISF 243
+G+++ +++SF
Sbjct: 367 NGYRLGD-RVLQVSF 380
>UNIPROTKB|G4MTV6 [details] [associations]
symbol:MGG_01579 "Pre-mRNA branch site protein p14"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001232 KO:K12833 RefSeq:XP_003714557.1
ProteinModelPortal:G4MTV6 SMR:G4MTV6 EnsemblFungi:MGG_01579T0
GeneID:2679525 KEGG:mgr:MGG_01579 Uniprot:G4MTV6
Length = 115
Score = 91 (37.1 bits), Expect = 0.00040, P = 0.00040
Identities = 20/85 (23%), Positives = 42/85 (49%)
Query: 10 VTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
V ++V ++S + L+ +F +FG I + +G AFV+++++ A A
Sbjct: 11 VNRALFVKNLSYNVTPEELFDLFGKFGPIRQVRQGIASNTKGTAFVVYEDVMDAKQACDK 70
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISK 94
+ GF F ++ + + Y + + SK
Sbjct: 71 LNGFNFQNRYLVVLYHQPEKMARSK 95
>UNIPROTKB|F1NUL7 [details] [associations]
symbol:SART3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0043231
"intracellular membrane-bounded organelle" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GO:GO:0006396 GeneTree:ENSGT00550000074656 EMBL:AADN02034959
EMBL:AADN02034960 EMBL:AADN02034961 EMBL:AADN02034962
EMBL:AADN02034963 IPI:IPI00819201 Ensembl:ENSGALT00000038897
ArrayExpress:F1NUL7 Uniprot:F1NUL7
Length = 857
Score = 95 (38.5 bits), Expect = 0.00043, Sum P(2) = 0.00043
Identities = 24/75 (32%), Positives = 41/75 (54%)
Query: 174 LFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR----HDIAFVEFENEMQSAAAKLALH 229
LF++ LP ++ L + K++RLV NR +A+VE+ENE Q++ A L +
Sbjct: 697 LFISGLPFSCTKEELEDICKAHGNVKDIRLVTNRAGKPKGLAYVEYENEAQASQAVLKMD 756
Query: 230 GFKITPTHAMKISFA 244
G I H +K++ +
Sbjct: 757 GLTIKE-HVIKVAIS 770
Score = 63 (27.2 bits), Expect = 0.00043, Sum P(2) = 0.00043
Identities = 21/74 (28%), Positives = 38/74 (51%)
Query: 14 VYVTHIS--STDLKKSLYAIFSQFGQIMDIVALKTLK--MRGQAFVIFKEIASATNAL-- 67
V+V+++S TD + L +F G++ + + + K RG +V FK+ SA AL
Sbjct: 600 VFVSNLSYNMTDPEVKLKELFESCGEVSQVRPVFSNKGTFRGYCYVEFKDEKSALQALGM 659
Query: 68 --RSMQGFPFYDKP 79
+ ++G P + P
Sbjct: 660 DRKVVEGRPMFVSP 673
>UNIPROTKB|Q9UKA9 [details] [associations]
symbol:PTBP2 "Polypyrimidine tract-binding protein 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006376 "mRNA splice site
selection" evidence=IEA] [GO:2000177 "regulation of neural
precursor cell proliferation" evidence=IEA] [GO:0033119 "negative
regulation of RNA splicing" evidence=IDA] InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0033119 GO:GO:0006376 TIGRFAMs:TIGR01649 KO:K14948
HOVERGEN:HBG069548 eggNOG:NOG263741 EMBL:AF176085 EMBL:AB051232
EMBL:AB051233 EMBL:AF530580 EMBL:AF530581 EMBL:AF530582
EMBL:AF530583 EMBL:BK000526 EMBL:AL357150 EMBL:BC016582
IPI:IPI00254162 IPI:IPI00514064 IPI:IPI00641664 IPI:IPI00647067
IPI:IPI00743676 IPI:IPI00748295 RefSeq:NP_067013.1
UniGene:Hs.269895 UniGene:Hs.596061 PDB:2CQ1 PDBsum:2CQ1
ProteinModelPortal:Q9UKA9 SMR:Q9UKA9 IntAct:Q9UKA9
MINT:MINT-1483252 STRING:Q9UKA9 PhosphoSite:Q9UKA9 DMDM:74761983
REPRODUCTION-2DPAGE:IPI00647067 PaxDb:Q9UKA9 PRIDE:Q9UKA9
DNASU:58155 Ensembl:ENST00000236228 Ensembl:ENST00000370197
Ensembl:ENST00000370198 Ensembl:ENST00000426398 GeneID:58155
KEGG:hsa:58155 UCSC:uc001drn.2 UCSC:uc001dro.2 UCSC:uc001drq.3
UCSC:uc001drr.3 CTD:58155 GeneCards:GC01P097187 HGNC:HGNC:17662
HPA:HPA047420 MIM:608449 neXtProt:NX_Q9UKA9 PharmGKB:PA33935
OrthoDB:EOG473PSG ChiTaRS:PTBP2 EvolutionaryTrace:Q9UKA9
GenomeRNAi:58155 NextBio:64859 ArrayExpress:Q9UKA9 Bgee:Q9UKA9
CleanEx:HS_PTBP2 Genevestigator:Q9UKA9 GermOnline:ENSG00000117569
Uniprot:Q9UKA9
Length = 531
Score = 89 (36.4 bits), Expect = 0.00044, Sum P(2) = 0.00044
Identities = 20/77 (25%), Positives = 37/77 (48%)
Query: 169 PPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLAL 228
PP+ L L+N+P +E L LF G + H +A ++ ++ A + L
Sbjct: 452 PPSATLHLSNIPPSVAEEDLRTLFANTGGTVKAFKFFQDHKMALLQMATVEEAIQALIDL 511
Query: 229 HGFKITPTHAMKISFAK 245
H + + H +++SF+K
Sbjct: 512 HNYNLGENHHLRVSFSK 528
Score = 65 (27.9 bits), Expect = 0.00044, Sum P(2) = 0.00044
Identities = 18/61 (29%), Positives = 33/61 (54%)
Query: 28 LYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK--PMRIQYS 85
L+ IFS+FG ++ I+ T + QA + + + +A A ++ G Y+ +RI +S
Sbjct: 197 LHQIFSKFGAVLKIITF-TKNNQFQALLQYGDPVNAQQAKLALDGQNIYNACCTLRIDFS 255
Query: 86 K 86
K
Sbjct: 256 K 256
>MGI|MGI:1860489 [details] [associations]
symbol:Ptbp2 "polypyrimidine tract binding protein 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IDA] [GO:0006376 "mRNA splice site selection"
evidence=IMP;IDA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0033119 "negative
regulation of RNA splicing" evidence=ISO] [GO:2000177 "regulation
of neural precursor cell proliferation" evidence=IMP]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1860489 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0033119
GO:GO:0006376 TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508
GO:GO:2000177 KO:K14948 HOVERGEN:HBG069548 eggNOG:NOG263741
HOGENOM:HOG000231699 CTD:58155 OrthoDB:EOG473PSG ChiTaRS:PTBP2
EMBL:AF095718 EMBL:AK013734 EMBL:AK137348 EMBL:BC010255
EMBL:AY333752 EMBL:BK000527 IPI:IPI00136002 IPI:IPI00751759
RefSeq:NP_062423.1 UniGene:Mm.29966 ProteinModelPortal:Q91Z31
SMR:Q91Z31 IntAct:Q91Z31 STRING:Q91Z31 PhosphoSite:Q91Z31
PaxDb:Q91Z31 PRIDE:Q91Z31 Ensembl:ENSMUST00000029780 GeneID:56195
KEGG:mmu:56195 UCSC:uc008rdi.1 UCSC:uc008rdk.2 InParanoid:Q91Z31
OMA:QSQLAMS NextBio:312010 Bgee:Q91Z31 CleanEx:MM_PTBP2
Genevestigator:Q91Z31 GermOnline:ENSMUSG00000028134 Uniprot:Q91Z31
Length = 531
Score = 89 (36.4 bits), Expect = 0.00044, Sum P(2) = 0.00044
Identities = 20/77 (25%), Positives = 37/77 (48%)
Query: 169 PPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLAL 228
PP+ L L+N+P +E L LF G + H +A ++ ++ A + L
Sbjct: 452 PPSATLHLSNIPPSVAEEDLRTLFANTGGTVKAFKFFQDHKMALLQMATVEEAIQALIDL 511
Query: 229 HGFKITPTHAMKISFAK 245
H + + H +++SF+K
Sbjct: 512 HNYNLGENHHLRVSFSK 528
Score = 65 (27.9 bits), Expect = 0.00044, Sum P(2) = 0.00044
Identities = 18/61 (29%), Positives = 33/61 (54%)
Query: 28 LYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK--PMRIQYS 85
L+ IFS+FG ++ I+ T + QA + + + +A A ++ G Y+ +RI +S
Sbjct: 197 LHQIFSKFGAVLKIITF-TKNNQFQALLQYGDPVNAQQAKLALDGQNIYNACCTLRIDFS 255
Query: 86 K 86
K
Sbjct: 256 K 256
>RGD|1359267 [details] [associations]
symbol:Ptbp2 "polypyrimidine tract binding protein 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA;ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA;ISO] [GO:0006376
"mRNA splice site selection" evidence=IEA;ISO] [GO:0033119
"negative regulation of RNA splicing" evidence=IEA;ISO] [GO:2000177
"regulation of neural precursor cell proliferation"
evidence=IEA;ISO] InterPro:IPR000504 InterPro:IPR006536
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 RGD:1359267
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0033119 GO:GO:0006376 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 KO:K14948 HOVERGEN:HBG069548
eggNOG:NOG263741 HOGENOM:HOG000231699 CTD:58155 OrthoDB:EOG473PSG
EMBL:AJ010585 EMBL:BC082076 EMBL:AY333750 IPI:IPI00471764
IPI:IPI00758469 RefSeq:NP_001005555.1 UniGene:Rn.64916
ProteinModelPortal:Q66H20 SMR:Q66H20 STRING:Q66H20 PRIDE:Q66H20
Ensembl:ENSRNOT00000015036 GeneID:310820 KEGG:rno:310820
UCSC:RGD:1359267 InParanoid:Q66H20 NextBio:662705
Genevestigator:Q66H20 GermOnline:ENSRNOG00000010827 Uniprot:Q66H20
Length = 531
Score = 89 (36.4 bits), Expect = 0.00044, Sum P(2) = 0.00044
Identities = 20/77 (25%), Positives = 37/77 (48%)
Query: 169 PPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLAL 228
PP+ L L+N+P +E L LF G + H +A ++ ++ A + L
Sbjct: 452 PPSATLHLSNIPPSVAEEDLRTLFANTGGTVKAFKFFQDHKMALLQMATVEEAIQALIDL 511
Query: 229 HGFKITPTHAMKISFAK 245
H + + H +++SF+K
Sbjct: 512 HNYNLGENHHLRVSFSK 528
Score = 65 (27.9 bits), Expect = 0.00044, Sum P(2) = 0.00044
Identities = 18/61 (29%), Positives = 33/61 (54%)
Query: 28 LYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDK--PMRIQYS 85
L+ IFS+FG ++ I+ T + QA + + + +A A ++ G Y+ +RI +S
Sbjct: 197 LHQIFSKFGAVLKIITF-TKNNQFQALLQYGDPVNAQQAKLALDGQNIYNACCTLRIDFS 255
Query: 86 K 86
K
Sbjct: 256 K 256
>UNIPROTKB|K7EMY9 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
Length = 159
Score = 102 (41.0 bits), Expect = 0.00044, P = 0.00044
Identities = 25/80 (31%), Positives = 45/80 (56%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVALK---TLKMRGQAFVIFKEIASATNALRSM 70
++V +S ++SL +FS++GQI ++V +K T + RG FV F+ I A +A+ +M
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 71 QGFPFYDKPMRIQYSKTDSD 90
G + +R+ + SD
Sbjct: 68 NGKSVDGRQIRVDQAGKSSD 87
>UNIPROTKB|B1AM49 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623
UniGene:Hs.166109 HGNC:HGNC:3313 OMA:RAVENGP SMR:B1AM49
Ensembl:ENST00000359598 Uniprot:B1AM49
Length = 387
Score = 85 (35.0 bits), Expect = 0.00045, Sum P(2) = 0.00045
Identities = 27/106 (25%), Positives = 52/106 (49%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMD---IVALKTLKMRGQAFVIFKEIASATNALRSM 70
+YV+ + T +K L +FSQ+G+I+ +V T RG F+ F + A A++ +
Sbjct: 155 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 214
Query: 71 QGF--PFYDKPMRIQYSKTDSDVISK-IKGTFMERPKKVRKQPAPV 113
G P +P+ ++++ S ++ I + P R+ P P+
Sbjct: 215 NGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPN--RRYPGPL 258
Score = 66 (28.3 bits), Expect = 0.00045, Sum P(2) = 0.00045
Identities = 21/90 (23%), Positives = 42/90 (46%)
Query: 160 MATAGVPEQP-PNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLV----PNR-HDIAFV 213
+A +P P +F+ NL + E +L +F F V+++ N+ FV
Sbjct: 291 LAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFV 350
Query: 214 EFENEMQSAAAKLALHGFKITPTHAMKISF 243
N ++A A +L+G+++ +++SF
Sbjct: 351 TMTNYDEAAMAIASLNGYRLGD-RVLQVSF 379
>UNIPROTKB|Q9BZC1 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] [GO:0006376 "mRNA splice
site selection" evidence=IEA] [GO:0090394 "negative regulation of
excitatory postsynaptic membrane potential" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0042835 "BRE binding"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IDA] [GO:0007281 "germ cell development"
evidence=NAS] [GO:0009790 "embryo development" evidence=NAS]
[GO:0000900 "translation repressor activity, nucleic acid binding"
evidence=NAS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=IDA] [GO:0000380 "alternative mRNA
splicing, via spliceosome" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0009790 GO:GO:0007281
GO:GO:0000900 GO:GO:0000380 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 eggNOG:NOG251494 GO:GO:0042835 GO:GO:0006376
GO:GO:0000381 OrthoDB:EOG4RJG30 CTD:56853 EMBL:AF329265
EMBL:AK074596 EMBL:AB209774 EMBL:BC001946 EMBL:BC004167
EMBL:BC045711 EMBL:AF248650 EMBL:AF248651 IPI:IPI00024603
IPI:IPI00384535 IPI:IPI00853216 IPI:IPI00853277 IPI:IPI00853444
RefSeq:NP_001020258.1 RefSeq:NP_001020259.1 RefSeq:NP_001020260.1
RefSeq:NP_064565.1 UniGene:Hs.435976 UniGene:Hs.600908 PDB:2DGP
PDB:2DNK PDBsum:2DGP PDBsum:2DNK ProteinModelPortal:Q9BZC1
SMR:Q9BZC1 STRING:Q9BZC1 PhosphoSite:Q9BZC1 DMDM:74761348
PRIDE:Q9BZC1 Ensembl:ENST00000334919 Ensembl:ENST00000361795
Ensembl:ENST00000412753 Ensembl:ENST00000420428 GeneID:56853
KEGG:hsa:56853 UCSC:uc002lae.2 UCSC:uc002laf.2 UCSC:uc002lag.2
UCSC:uc021uix.1 UCSC:uc021uiy.1 GeneCards:GC18M034823
HGNC:HGNC:14015 HPA:HPA037986 MIM:612679 neXtProt:NX_Q9BZC1
PharmGKB:PA25428 InParanoid:Q9BZC1 OMA:EDSEKNG PhylomeDB:Q9BZC1
ChiTaRS:CELF4 EvolutionaryTrace:Q9BZC1 GenomeRNAi:56853
NextBio:62266 ArrayExpress:Q9BZC1 Bgee:Q9BZC1 CleanEx:HS_BRUNOL4
Genevestigator:Q9BZC1 Uniprot:Q9BZC1
Length = 486
Score = 82 (33.9 bits), Expect = 0.00045, Sum P(2) = 0.00045
Identities = 27/85 (31%), Positives = 45/85 (52%)
Query: 168 QPPNQI--LFLTNLPEETSEMMLSMLFNQFPGFKEVRLV--P--NRHDIAFVEFENEMQS 221
QPP+Q LF+ L ++ SE + LF F +E ++ P N AFV++ + ++
Sbjct: 146 QPPSQDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEA 205
Query: 222 AAAKLALHGFKITP--THAMKISFA 244
AA ALHG + P + ++ + FA
Sbjct: 206 QAAINALHGSQTMPGASSSLVVKFA 230
Score = 72 (30.4 bits), Expect = 0.00045, Sum P(2) = 0.00045
Identities = 20/71 (28%), Positives = 40/71 (56%)
Query: 25 KKSLYAIFSQFGQIMDIVALK---TLKMRGQAFVIFKEIASAT---NALRSMQGFPFYDK 78
+K L +F +FG+I ++ LK T +G AF+ + E SA +AL + P ++
Sbjct: 67 EKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNR 126
Query: 79 PMRIQYSKTDS 89
P++++ + ++S
Sbjct: 127 PIQVKPADSES 137
>UNIPROTKB|Q5NVC8 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9601
"Pongo abelii" [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026 CTD:56853 EMBL:CR859631
EMBL:CR860590 EMBL:CR926110 RefSeq:NP_001127577.1
RefSeq:NP_001128833.1 UniGene:Pab.18713 ProteinModelPortal:Q5NVC8
SMR:Q5NVC8 PRIDE:Q5NVC8 GeneID:100174655 KEGG:pon:100174655
InParanoid:Q5NVC8 Uniprot:Q5NVC8
Length = 486
Score = 82 (33.9 bits), Expect = 0.00045, Sum P(2) = 0.00045
Identities = 27/85 (31%), Positives = 45/85 (52%)
Query: 168 QPPNQI--LFLTNLPEETSEMMLSMLFNQFPGFKEVRLV--P--NRHDIAFVEFENEMQS 221
QPP+Q LF+ L ++ SE + LF F +E ++ P N AFV++ + ++
Sbjct: 146 QPPSQDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEA 205
Query: 222 AAAKLALHGFKITP--THAMKISFA 244
AA ALHG + P + ++ + FA
Sbjct: 206 QAAINALHGSQTMPGASSSLVVKFA 230
Score = 72 (30.4 bits), Expect = 0.00045, Sum P(2) = 0.00045
Identities = 20/71 (28%), Positives = 40/71 (56%)
Query: 25 KKSLYAIFSQFGQIMDIVALK---TLKMRGQAFVIFKEIASAT---NALRSMQGFPFYDK 78
+K L +F +FG+I ++ LK T +G AF+ + E SA +AL + P ++
Sbjct: 67 EKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNR 126
Query: 79 PMRIQYSKTDS 89
P++++ + ++S
Sbjct: 127 PIQVKPADSES 137
>MGI|MGI:1932407 [details] [associations]
symbol:Celf4 "CUGBP, Elav-like family member 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006376 "mRNA splice site
selection" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0048026
"positive regulation of mRNA splicing, via spliceosome"
evidence=ISO] [GO:0090394 "negative regulation of excitatory
postsynaptic membrane potential" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1932407 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 eggNOG:COG0724 GO:GO:0000380
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026
GO:GO:0042835 GO:GO:0006376 GeneTree:ENSGT00560000076837
GO:GO:0000381 OrthoDB:EOG4RJG30 CTD:56853 ChiTaRS:CELF4
EMBL:AF515450 EMBL:AK044072 EMBL:AK048427 EMBL:AK051458
EMBL:AC121094 EMBL:AC144938 EMBL:AC153142 EMBL:BC048405
EMBL:BC052744 EMBL:AF314173 IPI:IPI00222845 IPI:IPI00330819
IPI:IPI00470036 IPI:IPI00757837 IPI:IPI00853687 IPI:IPI00853900
IPI:IPI00853926 RefSeq:NP_001139764.1 RefSeq:NP_001139765.1
RefSeq:NP_001139766.1 RefSeq:NP_001139767.1 RefSeq:NP_001167545.1
RefSeq:NP_573458.2 UniGene:Mm.266435 ProteinModelPortal:Q7TSY6
SMR:Q7TSY6 STRING:Q7TSY6 PhosphoSite:Q7TSY6 PaxDb:Q7TSY6
PRIDE:Q7TSY6 Ensembl:ENSMUST00000025117 Ensembl:ENSMUST00000115816
GeneID:108013 KEGG:mmu:108013 UCSC:uc008ehk.2 UCSC:uc008ehl.2
UCSC:uc012ban.1 UCSC:uc012bao.1 UCSC:uc012bap.1 UCSC:uc012baq.1
OMA:SAMESIN NextBio:359881 Bgee:Q7TSY6 CleanEx:MM_BRUNOL4
Genevestigator:Q7TSY6 GO:GO:0090394 Uniprot:Q7TSY6
Length = 486
Score = 82 (33.9 bits), Expect = 0.00045, Sum P(2) = 0.00045
Identities = 27/85 (31%), Positives = 45/85 (52%)
Query: 168 QPPNQI--LFLTNLPEETSEMMLSMLFNQFPGFKEVRLV--P--NRHDIAFVEFENEMQS 221
QPP+Q LF+ L ++ SE + LF F +E ++ P N AFV++ + ++
Sbjct: 146 QPPSQDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEA 205
Query: 222 AAAKLALHGFKITP--THAMKISFA 244
AA ALHG + P + ++ + FA
Sbjct: 206 QAAINALHGSQTMPGASSSLVVKFA 230
Score = 72 (30.4 bits), Expect = 0.00045, Sum P(2) = 0.00045
Identities = 20/71 (28%), Positives = 40/71 (56%)
Query: 25 KKSLYAIFSQFGQIMDIVALK---TLKMRGQAFVIFKEIASAT---NALRSMQGFPFYDK 78
+K L +F +FG+I ++ LK T +G AF+ + E SA +AL + P ++
Sbjct: 67 EKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNR 126
Query: 79 PMRIQYSKTDS 89
P++++ + ++S
Sbjct: 127 PIQVKPADSES 137
>UNIPROTKB|E2RI94 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AAEX03007909
EMBL:AAEX03007910 EMBL:AAEX03007911 EMBL:AAEX03007912
Ensembl:ENSCAFT00000002645 Uniprot:E2RI94
Length = 388
Score = 85 (35.0 bits), Expect = 0.00045, Sum P(2) = 0.00045
Identities = 27/106 (25%), Positives = 52/106 (49%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMD---IVALKTLKMRGQAFVIFKEIASATNALRSM 70
+YV+ + T +K L +FSQ+G+I+ +V T RG F+ F + A A++ +
Sbjct: 156 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 215
Query: 71 QGF--PFYDKPMRIQYSKTDSDVISK-IKGTFMERPKKVRKQPAPV 113
G P +P+ ++++ S ++ I + P R+ P P+
Sbjct: 216 NGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPN--RRYPGPL 259
Score = 66 (28.3 bits), Expect = 0.00045, Sum P(2) = 0.00045
Identities = 21/90 (23%), Positives = 42/90 (46%)
Query: 160 MATAGVPEQP-PNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLV----PNR-HDIAFV 213
+A +P P +F+ NL + E +L +F F V+++ N+ FV
Sbjct: 292 LAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFV 351
Query: 214 EFENEMQSAAAKLALHGFKITPTHAMKISF 243
N ++A A +L+G+++ +++SF
Sbjct: 352 TMTNYDEAAMAIASLNGYRLGD-RVLQVSF 380
>TAIR|locus:504955737 [details] [associations]
symbol:AT3G21215 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P09012 eggNOG:NOG255497
HOGENOM:HOG000242657 EMBL:AF361632 EMBL:AY143892 EMBL:AK118175
EMBL:AK226266 EMBL:AK317062 IPI:IPI00534607 RefSeq:NP_683582.2
UniGene:At.27825 ProteinModelPortal:Q9ASW4 SMR:Q9ASW4 IntAct:Q9ASW4
PaxDb:Q9ASW4 PRIDE:Q9ASW4 EnsemblPlants:AT3G21215.1 GeneID:821675
KEGG:ath:AT3G21215 TAIR:At3g21215 InParanoid:Q9ASW4 OMA:EASQVNF
PhylomeDB:Q9ASW4 ProtClustDB:CLSN2680031 Genevestigator:Q9ASW4
Uniprot:Q9ASW4
Length = 339
Score = 110 (43.8 bits), Expect = 0.00049, P = 0.00049
Identities = 26/84 (30%), Positives = 45/84 (53%)
Query: 165 VPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLV-PNRHDIAFVEFENEMQSAA 223
+ + PP LF+ NL E +E L L + PGFK+++++ RH + F+EFE+ +
Sbjct: 226 IKDNPPCNTLFIGNLGENINEEELRSLLSAQPGFKQMKILRQERHTVCFIEFEDVNSATN 285
Query: 224 AKLALHGFKITPTHA--MKISFAK 245
L G I + + M+I ++K
Sbjct: 286 VHHNLQGAVIPSSGSIGMRIQYSK 309
>UNIPROTKB|F1SNK9 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AEMK01195641
EMBL:CU407236 Ensembl:ENSSSCT00000005656 Uniprot:F1SNK9
Length = 400
Score = 85 (35.0 bits), Expect = 0.00049, Sum P(2) = 0.00049
Identities = 27/106 (25%), Positives = 52/106 (49%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMD---IVALKTLKMRGQAFVIFKEIASATNALRSM 70
+YV+ + T +K L +FSQ+G+I+ +V T RG F+ F + A A++ +
Sbjct: 167 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 226
Query: 71 QGF--PFYDKPMRIQYSKTDSDVISK-IKGTFMERPKKVRKQPAPV 113
G P +P+ ++++ S ++ I + P R+ P P+
Sbjct: 227 NGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPN--RRYPGPL 270
Score = 66 (28.3 bits), Expect = 0.00049, Sum P(2) = 0.00049
Identities = 21/90 (23%), Positives = 42/90 (46%)
Query: 160 MATAGVPEQP-PNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLV----PNR-HDIAFV 213
+A +P P +F+ NL + E +L +F F V+++ N+ FV
Sbjct: 304 LAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFV 363
Query: 214 EFENEMQSAAAKLALHGFKITPTHAMKISF 243
N ++A A +L+G+++ +++SF
Sbjct: 364 TMTNYDEAAMAIASLNGYRLGD-RVLQVSF 392
>UNIPROTKB|Q4VY17 [details] [associations]
symbol:PABPC1L "EPAB" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AL008725 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HOVERGEN:HBG002295 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
EMBL:AL109839 UniGene:Hs.641481 HGNC:HGNC:15797 EMBL:EU190483
IPI:IPI00306870 SMR:Q4VY17 STRING:Q4VY17 Ensembl:ENST00000217074
Ensembl:ENST00000537323 Uniprot:Q4VY17
Length = 330
Score = 83 (34.3 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 25/104 (24%), Positives = 50/104 (48%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDI-VALKTLKMRGQAFVIFKEIASATNALRSMQG 72
+++ ++ + K+LY FS FG I+ VA RG FV F+ +A A+ +M G
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMNG 160
Query: 73 FPFYDKPMRIQYSKTDSDVISKIKGTFMERPK-KVRKQPAPVED 115
D+ + + + K+ + +++ +E V+ P V++
Sbjct: 161 MLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDE 204
Score = 66 (28.3 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 17/65 (26%), Positives = 34/65 (52%)
Query: 174 LFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR--HD--IAFVEFENEMQSAAAKLALH 229
+++ NLP + E L LF+QF V+++ + H FV FE ++ A + ++
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMN 252
Query: 230 GFKIT 234
G +++
Sbjct: 253 GKEVS 257
>UNIPROTKB|F1NFC5 [details] [associations]
symbol:RBM41 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00530000063786 OMA:REMEIEN EMBL:AADN02013197
EMBL:AADN02013196 IPI:IPI00597936 Ensembl:ENSGALT00000007718
Uniprot:F1NFC5
Length = 412
Score = 111 (44.1 bits), Expect = 0.00052, P = 0.00052
Identities = 24/76 (31%), Positives = 44/76 (57%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTL--KMRGQAFVIFKEIASATNALRSMQ 71
+YV ++ K + ++F++F Q + + L +MRGQAF+ F +I SA +A+ +
Sbjct: 314 LYVKNLGPRVTMKDMVSLFARFQQDSTPIQFRLLSGRMRGQAFITFPDIQSAQDAMLLVN 373
Query: 72 GFPFYDKPMRIQYSKT 87
G+ KPM I++ K+
Sbjct: 374 GYRLQGKPMVIEFGKS 389
>UNIPROTKB|K7EPM4 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585913 Ensembl:ENST00000586636
Ensembl:ENST00000586773 Ensembl:ENST00000589235
Ensembl:ENST00000589686 Ensembl:ENST00000591935 Uniprot:K7EPM4
Length = 168
Score = 102 (41.0 bits), Expect = 0.00064, P = 0.00064
Identities = 25/80 (31%), Positives = 45/80 (56%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVALK---TLKMRGQAFVIFKEIASATNALRSM 70
++V +S ++SL +FS++GQI ++V +K T + RG FV F+ I A +A+ +M
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 71 QGFPFYDKPMRIQYSKTDSD 90
G + +R+ + SD
Sbjct: 68 NGKSVDGRQIRVDQAGKSSD 87
>ZFIN|ZDB-GENE-040704-9 [details] [associations]
symbol:elavl2 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 2 (Hu antigen B)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040704-9 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OrthoDB:EOG4JHCFV EMBL:AL954145
IPI:IPI00482002 UniGene:Dr.84858 SMR:Q1MT19
Ensembl:ENSDART00000139420 InParanoid:Q1MT19 Uniprot:Q1MT19
Length = 388
Score = 88 (36.0 bits), Expect = 0.00064, Sum P(2) = 0.00064
Identities = 28/106 (26%), Positives = 51/106 (48%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMD---IVALKTLKMRGQAFVIFKEIASATNALRSM 70
+YV+ + T +K L +FSQFG+I+ +V T RG F+ F A A++ +
Sbjct: 156 LYVSGLPKTMTQKELEQLFSQFGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGL 215
Query: 71 QGF--PFYDKPMRIQYSKTDSDVISK-IKGTFMERPKKVRKQPAPV 113
G P +P+ ++++ S S+ + + P R+ P P+
Sbjct: 216 NGQKPPGATEPITVKFANNPSQKSSQALLSHLYQSPN--RRYPGPL 259
Score = 61 (26.5 bits), Expect = 0.00064, Sum P(2) = 0.00064
Identities = 18/75 (24%), Positives = 37/75 (49%)
Query: 174 LFLTNLPEETSEMMLSMLFNQFPGFKEVRLV----PNR-HDIAFVEFENEMQSAAAKLAL 228
+F+ NL + E +L +F F V+++ N+ FV N ++A A +L
Sbjct: 307 IFVYNLAPDADENVLWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAVAIASL 366
Query: 229 HGFKITPTHAMKISF 243
+G+++ +++SF
Sbjct: 367 NGYRLGD-RVLQVSF 380
>UNIPROTKB|Q91903 [details] [associations]
symbol:elavl2 "ELAV-like protein 2" species:8355 "Xenopus
laevis" [GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0007399 "nervous system
development" evidence=IMP] [GO:0008298 "intracellular mRNA
localization" evidence=IMP] [GO:0017131 "uridine-rich cytoplasmic
polyadenylylation element binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA;IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0051260 "protein homooligomerization" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0007399 GO:GO:0000166
GO:GO:0051260 Gene3D:3.30.70.330 GO:GO:0000122 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
HSSP:P26378 KO:K13208 EMBL:X85111 EMBL:U17597 EMBL:BC170539
EMBL:BC094189 PIR:I51676 RefSeq:NP_001081035.1
RefSeq:NP_001081613.1 UniGene:Xl.1648 UniGene:Xl.34955
ProteinModelPortal:Q91903 SMR:Q91903 MINT:MINT-2880431
GeneID:394342 GeneID:397952 KEGG:xla:394342 KEGG:xla:397952
CTD:394342 CTD:397952 Xenbase:XB-GENE-6254447
Xenbase:XB-GENE-866091 GO:GO:0017131 Uniprot:Q91903
Length = 389
Score = 88 (36.0 bits), Expect = 0.00065, Sum P(2) = 0.00065
Identities = 27/106 (25%), Positives = 52/106 (49%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMD---IVALKTLKMRGQAFVIFKEIASATNALRSM 70
+YV+ + T +K L +FSQ+G+I+ +V T RG F+ F + A A++ +
Sbjct: 155 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 214
Query: 71 QGF--PFYDKPMRIQYSKTDSDVISK-IKGTFMERPKKVRKQPAPV 113
G P +P+ ++++ S ++ I + P R+ P P+
Sbjct: 215 NGQKPPGATEPITVKFANNPSQKVNHTILSQLYQSPN--RRYPGPL 258
Score = 61 (26.5 bits), Expect = 0.00065, Sum P(2) = 0.00065
Identities = 18/75 (24%), Positives = 37/75 (49%)
Query: 174 LFLTNLPEETSEMMLSMLFNQFPGFKEVRLV----PNR-HDIAFVEFENEMQSAAAKLAL 228
+F+ NL + E +L +F F V+++ N+ FV N ++A A +L
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 367
Query: 229 HGFKITPTHAMKISF 243
+G+++ +++SF
Sbjct: 368 NGYRLGD-RVLQVSF 381
>UNIPROTKB|F2Z2U1 [details] [associations]
symbol:RBMY1A1 "RNA-binding motif protein, Y chromosome,
family 1 member E" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC010141 HGNC:HGNC:9912
HGNC:HGNC:23914 EMBL:AC007322 HGNC:HGNC:23915 HGNC:HGNC:23916
IPI:IPI00916472 SMR:F2Z2U1 Ensembl:ENST00000358944
Ensembl:ENST00000361046 Ensembl:ENST00000382639
Ensembl:ENST00000382653 Uniprot:F2Z2U1
Length = 81
Score = 89 (36.4 bits), Expect = 0.00067, P = 0.00067
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 25 KKSLYAIFSQFGQIMDIVALK--TLKMRGQAFVIFKEIASATNALRSMQG 72
+K L A+F + G I +++ +K T K RG AF+ F+ A A NA + M G
Sbjct: 21 EKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNG 70
>UNIPROTKB|E2R6G2 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:E2R6G2 Ensembl:ENSCAFT00000031013 Uniprot:E2R6G2
Length = 172
Score = 102 (41.0 bits), Expect = 0.00073, P = 0.00073
Identities = 25/80 (31%), Positives = 45/80 (56%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVALK---TLKMRGQAFVIFKEIASATNALRSM 70
++V +S ++SL +FS++GQI ++V +K T + RG FV F+ I A +A+ +M
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 71 QGFPFYDKPMRIQYSKTDSD 90
G + +R+ + SD
Sbjct: 68 NGKSVDGRQIRVDQAGKSSD 87
>UNIPROTKB|Q14011 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISS;IDA] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0070181 "SSU rRNA binding" evidence=IDA]
[GO:0030371 "translation repressor activity" evidence=ISS]
[GO:0034063 "stress granule assembly" evidence=ISS] [GO:0009411
"response to UV" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=IDA] [GO:0009409 "response to cold"
evidence=TAS] [GO:0017148 "negative regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:D78134 EMBL:AF021336
EMBL:AC004258 EMBL:BC000403 EMBL:BC000901 IPI:IPI00641579
RefSeq:NP_001271.1 UniGene:Hs.618145 UniGene:Hs.634522 PDB:1X5S
PDBsum:1X5S ProteinModelPortal:Q14011 SMR:Q14011 IntAct:Q14011
MINT:MINT-5004534 STRING:Q14011 PhosphoSite:Q14011 DMDM:5921786
REPRODUCTION-2DPAGE:IPI00180954 PaxDb:Q14011 PRIDE:Q14011
DNASU:1153 Ensembl:ENST00000320936 GeneID:1153 KEGG:hsa:1153
UCSC:uc002lrr.4 GeneCards:GC19P001269 HGNC:HGNC:1982 MIM:602649
neXtProt:NX_Q14011 PharmGKB:PA26519 HOGENOM:HOG000276232
InParanoid:Q14011 OMA:ENRSRGY OrthoDB:EOG4HHP40 PhylomeDB:Q14011
ChiTaRS:CIRBP EvolutionaryTrace:Q14011 GenomeRNAi:1153 NextBio:4788
ArrayExpress:Q14011 Bgee:Q14011 CleanEx:HS_CIRBP
Genevestigator:Q14011 GermOnline:ENSG00000099622 Uniprot:Q14011
Length = 172
Score = 102 (41.0 bits), Expect = 0.00073, P = 0.00073
Identities = 25/80 (31%), Positives = 45/80 (56%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVALK---TLKMRGQAFVIFKEIASATNALRSM 70
++V +S ++SL +FS++GQI ++V +K T + RG FV F+ I A +A+ +M
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 71 QGFPFYDKPMRIQYSKTDSD 90
G + +R+ + SD
Sbjct: 68 NGKSVDGRQIRVDQAGKSSD 87
>UNIPROTKB|F1S6R1 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 GO:GO:0070181 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:CU929580
Ensembl:ENSSSCT00000014671 Uniprot:F1S6R1
Length = 172
Score = 102 (41.0 bits), Expect = 0.00073, P = 0.00073
Identities = 25/80 (31%), Positives = 45/80 (56%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVALK---TLKMRGQAFVIFKEIASATNALRSM 70
++V +S ++SL +FS++GQI ++V +K T + RG FV F+ I A +A+ +M
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 71 QGFPFYDKPMRIQYSKTDSD 90
G + +R+ + SD
Sbjct: 68 NGKSVDGRQIRVDQAGKSSD 87
>UNIPROTKB|Q5RF83 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:CR857278
RefSeq:NP_001124692.1 UniGene:Pab.19491 ProteinModelPortal:Q5RF83
SMR:Q5RF83 PRIDE:Q5RF83 GeneID:100171539 KEGG:pon:100171539
Uniprot:Q5RF83
Length = 172
Score = 102 (41.0 bits), Expect = 0.00073, P = 0.00073
Identities = 25/80 (31%), Positives = 45/80 (56%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVALK---TLKMRGQAFVIFKEIASATNALRSM 70
++V +S ++SL +FS++GQI ++V +K T + RG FV F+ I A +A+ +M
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 71 QGFPFYDKPMRIQYSKTDSD 90
G + +R+ + SD
Sbjct: 68 NGKSVDGRQIRVDQAGKSSD 87
>UNIPROTKB|K7ER40 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000591659 Uniprot:K7ER40
Length = 174
Score = 102 (41.0 bits), Expect = 0.00077, P = 0.00077
Identities = 25/80 (31%), Positives = 45/80 (56%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVALK---TLKMRGQAFVIFKEIASATNALRSM 70
++V +S ++SL +FS++GQI ++V +K T + RG FV F+ I A +A+ +M
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 71 QGFPFYDKPMRIQYSKTDSD 90
G + +R+ + SD
Sbjct: 68 NGKSVDGRQIRVDQAGKSSD 87
>ZFIN|ZDB-GENE-030131-579 [details] [associations]
symbol:rbmx "RNA binding motif protein, X-linked"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=ISS] [GO:0044530 "supraspliceosomal complex" evidence=ISS]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=ISS]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0051260 "protein homooligomerization"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0070062 "extracellular vesicular exosome" evidence=ISS]
[GO:0071347 "cellular response to interleukin-1" evidence=ISS]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-579
GO:GO:0007275 GO:GO:0008380 GO:GO:0000166 GO:GO:0070062
GO:GO:0051260 GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0071013
GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381
GO:GO:0044530 HSSP:Q14103 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 EMBL:AJ717349 EMBL:AY394938 EMBL:AL929434
EMBL:BC049509 EMBL:BC071326 IPI:IPI00509177 RefSeq:NP_997763.1
UniGene:Dr.76840 ProteinModelPortal:Q7ZWA3 SMR:Q7ZWA3 STRING:Q7ZWA3
PRIDE:Q7ZWA3 Ensembl:ENSDART00000007927 Ensembl:ENSDART00000131024
GeneID:321860 KEGG:dre:321860 CTD:27316 InParanoid:Q6TLG7 KO:K12885
OMA:PFFKGMS OrthoDB:EOG4CNQSK NextBio:20807559 ArrayExpress:Q7ZWA3
Bgee:Q7ZWA3 Uniprot:Q7ZWA3
Length = 379
Score = 109 (43.4 bits), Expect = 0.00079, P = 0.00079
Identities = 24/73 (32%), Positives = 44/73 (60%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVALK---TLKMRGQAFVIFKEIASATNALRSM 70
+++ +++ +K L A FS+FG+I +++ +K T K RG AFV ++ A +A R M
Sbjct: 10 LFIGGLNTETSEKVLEAYFSKFGRISEVLLMKDRETNKSRGFAFVTYENPGDAKDAAREM 69
Query: 71 QGFPFYDKPMRIQ 83
G P KP++++
Sbjct: 70 NGKPLDGKPIKVE 82
>MGI|MGI:1919223 [details] [associations]
symbol:Rbpms2 "RNA binding protein with multiple splicing 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1919223 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG255204 CTD:348093
HOGENOM:HOG000017369 HOVERGEN:HBG069897 OrthoDB:EOG42RD8G
HSSP:P09012 OMA:KLTSRQP EMBL:AK144659 EMBL:AK156633 EMBL:BC021788
IPI:IPI00121434 RefSeq:NP_082306.2 UniGene:Mm.29148
ProteinModelPortal:Q8VC52 SMR:Q8VC52 PhosphoSite:Q8VC52
PaxDb:Q8VC52 PRIDE:Q8VC52 DNASU:71973 Ensembl:ENSMUST00000055844
GeneID:71973 KEGG:mmu:71973 UCSC:uc009qdt.1
GeneTree:ENSGT00500000044861 InParanoid:Q8VC52 NextBio:335098
Bgee:Q8VC52 CleanEx:MM_RBPMS2 Genevestigator:Q8VC52 Uniprot:Q8VC52
Length = 206
Score = 104 (41.7 bits), Expect = 0.00085, P = 0.00085
Identities = 26/88 (29%), Positives = 47/88 (53%)
Query: 161 ATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRL-VPNRHDIAFVEFENEM 219
A G P + + LF++ LP + L +LF F G++ + + +R + FV F++
Sbjct: 14 AGTGSPLEEEVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSRQPVGFVIFDSRA 73
Query: 220 QSAAAKLALHGFKITPTH--AMKISFAK 245
+ AAK AL+G + P + +++ FAK
Sbjct: 74 GAEAAKNALNGIRFDPENPQTLRLEFAK 101
>WB|WBGene00011155 [details] [associations]
symbol:R09B3.2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24067 RefSeq:NP_493022.1 ProteinModelPortal:O45712
SMR:O45712 DIP:DIP-25840N MINT:MINT-1057569 STRING:O45712
PaxDb:O45712 EnsemblMetazoa:R09B3.2 GeneID:173070
KEGG:cel:CELE_R09B3.2 UCSC:R09B3.2 CTD:173070 WormBase:R09B3.2
InParanoid:O45712 OMA:NINEARP NextBio:878155 Uniprot:O45712
Length = 83
Score = 88 (36.0 bits), Expect = 0.00087, P = 0.00087
Identities = 24/72 (33%), Positives = 37/72 (51%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVAL---KTLKMRGQAFVIFKEIASATNALRSM 70
VYV + ++ L FS GQI ++ + +T + RG AF+ F E SA A+ M
Sbjct: 7 VYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQM 66
Query: 71 QGFPFYDKPMRI 82
G F +P+R+
Sbjct: 67 NGAEFNGRPLRV 78
>UNIPROTKB|F5H357 [details] [associations]
symbol:RBPMS "RNA-binding protein with multiple-splicing"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00414709 HGNC:HGNC:19097 ChiTaRS:RBPMS EMBL:AC102945
EMBL:AC011204 EMBL:AC109329 ProteinModelPortal:F5H357 SMR:F5H357
PRIDE:F5H357 Ensembl:ENST00000538486 ArrayExpress:F5H357
Bgee:F5H357 Uniprot:F5H357
Length = 153
Score = 99 (39.9 bits), Expect = 0.00087, P = 0.00087
Identities = 22/75 (29%), Positives = 42/75 (56%)
Query: 174 LFLTNLPEETSEMMLSMLFNQFPGFKEVRL-VPNRHDIAFVEFENEMQSAAAKLALHGFK 232
LF++ LP + L +LF F G++ + + ++ + FV F++ ++ AAK AL+G +
Sbjct: 26 LFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQPVGFVSFDSRSEAEAAKNALNGIR 85
Query: 233 ITPT--HAMKISFAK 245
P +++ FAK
Sbjct: 86 FDPEIPQTLRLEFAK 100
>WB|WBGene00003172 [details] [associations]
symbol:mec-8 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching"
evidence=IGI;IMP] [GO:0007638 "mechanosensory behavior"
evidence=IMP] [GO:0048666 "neuron development" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0048644
"muscle organ morphogenesis" evidence=IGI;IMP] [GO:0005634
"nucleus" evidence=IDA] [GO:0031581 "hemidesmosome assembly"
evidence=IGI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009792
GO:GO:0002119 GO:GO:0000166 GO:GO:0048644 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0048666 EMBL:Z81037 GO:GO:0031581 GO:GO:0007638
HSSP:P09012 GeneTree:ENSGT00500000044861 EMBL:X95609 EMBL:Z81084
PIR:T19360 RefSeq:NP_492508.1 SMR:G5ECJ4 IntAct:G5ECJ4
EnsemblMetazoa:F46A9.6.1 EnsemblMetazoa:F46A9.6.2
EnsemblMetazoa:F46A9.6.3 GeneID:172771 KEGG:cel:CELE_F46A9.6
CTD:172771 WormBase:F46A9.6 OMA:APSANGH NextBio:876941
Uniprot:G5ECJ4
Length = 312
Score = 105 (42.0 bits), Expect = 0.00092, Sum P(2) = 0.00092
Identities = 26/75 (34%), Positives = 42/75 (56%)
Query: 174 LFLTNLPEETSEMMLSMLFNQFPGFKEVRLV-PNRHDIAFVEFENEMQSAAAKLALHGFK 232
LF+ NL E +E L +F F GF +RL N +AFVE+ + ++ A ++L GF+
Sbjct: 230 LFVANLSAEVNEDTLRGVFKAFSGFTRLRLHNKNGSCVAFVEYSDLQKATQAMISLQGFQ 289
Query: 233 ITPTH--AMKISFAK 245
IT ++I +A+
Sbjct: 290 ITANDRGGLRIEYAR 304
Score = 36 (17.7 bits), Expect = 0.00092, Sum P(2) = 0.00092
Identities = 11/41 (26%), Positives = 22/41 (53%)
Query: 54 FVIFKEIASATNALRSMQGFPFYDK---PMRIQYSKTDSDV 91
FV F A +A + +QG F + +R++ +K+++ V
Sbjct: 77 FVTFLSQQDAQDARKMLQGVRFDPECAQVLRLELAKSNTKV 117
>UNIPROTKB|G5ECJ4 [details] [associations]
symbol:mec-8 "Protein MEC-8" species:6239 "Caenorhabditis
elegans" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0002119
GO:GO:0000166 GO:GO:0048644 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0048666 EMBL:Z81037 GO:GO:0031581 GO:GO:0007638 HSSP:P09012
GeneTree:ENSGT00500000044861 EMBL:X95609 EMBL:Z81084 PIR:T19360
RefSeq:NP_492508.1 SMR:G5ECJ4 IntAct:G5ECJ4
EnsemblMetazoa:F46A9.6.1 EnsemblMetazoa:F46A9.6.2
EnsemblMetazoa:F46A9.6.3 GeneID:172771 KEGG:cel:CELE_F46A9.6
CTD:172771 WormBase:F46A9.6 OMA:APSANGH NextBio:876941
Uniprot:G5ECJ4
Length = 312
Score = 105 (42.0 bits), Expect = 0.00092, Sum P(2) = 0.00092
Identities = 26/75 (34%), Positives = 42/75 (56%)
Query: 174 LFLTNLPEETSEMMLSMLFNQFPGFKEVRLV-PNRHDIAFVEFENEMQSAAAKLALHGFK 232
LF+ NL E +E L +F F GF +RL N +AFVE+ + ++ A ++L GF+
Sbjct: 230 LFVANLSAEVNEDTLRGVFKAFSGFTRLRLHNKNGSCVAFVEYSDLQKATQAMISLQGFQ 289
Query: 233 ITPTH--AMKISFAK 245
IT ++I +A+
Sbjct: 290 ITANDRGGLRIEYAR 304
Score = 36 (17.7 bits), Expect = 0.00092, Sum P(2) = 0.00092
Identities = 11/41 (26%), Positives = 22/41 (53%)
Query: 54 FVIFKEIASATNALRSMQGFPFYDK---PMRIQYSKTDSDV 91
FV F A +A + +QG F + +R++ +K+++ V
Sbjct: 77 FVTFLSQQDAQDARKMLQGVRFDPECAQVLRLELAKSNTKV 117
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.323 0.135 0.383 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 246 203 0.00092 111 3 11 22 0.42 32
31 0.46 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 134
No. of states in DFA: 551 (59 KB)
Total size of DFA: 138 KB (2087 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 16.59u 0.09s 16.68t Elapsed: 00:00:10
Total cpu time: 16.60u 0.10s 16.70t Elapsed: 00:00:11
Start: Thu Aug 15 16:02:59 2013 End: Thu Aug 15 16:03:10 2013
WARNINGS ISSUED: 1