RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4057
(246 letters)
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 91
Score = 67.4 bits (164), Expect = 2e-15
Identities = 59/86 (68%), Positives = 77/86 (89%), Gaps = 4/86 (4%)
Query: 14 VYVTHISST----DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
+Y+ +++ +LKKSL+AIFS+FGQI+DI+ ++LKMRGQAFVIFKE++SATNALRS
Sbjct: 6 IYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRS 65
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKI 95
MQGFPFYDKPMRIQY+KTDSD+I+K+
Sbjct: 66 MQGFPFYDKPMRIQYAKTDSDIIAKM 91
Score = 43.5 bits (102), Expect = 1e-06
Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 7/83 (8%)
Query: 170 PNQILFLTNLPEETSEMML----SMLFNQFPGFKEVRLVPNRHD--IAFVEFENEMQSAA 223
PN +++ NL E+ + L +F++F ++ + + AFV F+ +
Sbjct: 2 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATN 61
Query: 224 AKLALHGFKITPTHAMKISFAKK 246
A ++ GF M+I +AK
Sbjct: 62 ALRSMQGFPF-YDKPMRIQYAKT 83
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 63.9 bits (155), Expect = 7e-14
Identities = 23/103 (22%), Positives = 48/103 (46%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGF 73
+Y+ ++ + +Y IF ++G I I T + RG A+V++++I A NA + GF
Sbjct: 10 LYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDHLSGF 69
Query: 74 PFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPAPVEDP 116
++ + + Y + E+ K ++++ DP
Sbjct: 70 NVCNRYLVVLYYNANRAFQKMDTKKKEEQLKLLKEKYGINTDP 112
Score = 48.5 bits (115), Expect = 4e-08
Identities = 15/79 (18%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 169 PPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHD--IAFVEFENEMQSAAAKL 226
N+IL++ NLP + + + +F ++ +++R+ A+V +E+ + A
Sbjct: 5 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACD 64
Query: 227 ALHGFKITPTHAMKISFAK 245
L GF + + + +
Sbjct: 65 HLSGFNVC-NRYLVVLYYN 82
>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 83
Score = 57.9 bits (139), Expect = 5e-12
Identities = 72/80 (90%), Positives = 75/80 (93%)
Query: 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKL 226
EQPPNQILFLTNLPEET+EMMLSMLFNQFPGFKEVRLVPNRHDIAFVEF E+QS AAK
Sbjct: 4 EQPPNQILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFTTELQSNAAKE 63
Query: 227 ALHGFKITPTHAMKISFAKK 246
AL GFKITPTHAMKI+FAKK
Sbjct: 64 ALQGFKITPTHAMKITFAKK 83
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 57.2 bits (138), Expect = 8e-12
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVALK---TLKMRGQAFVIFKEIASATNALRSM 70
+YV + + LY FS G I+ I + T + G A+V F++ A A AL +M
Sbjct: 3 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 62
Query: 71 QGFPFYDKPMRIQYSKTD 88
KP+RI +S+ D
Sbjct: 63 NFDVIKGKPVRIMWSQRD 80
Score = 49.9 bits (119), Expect = 4e-09
Identities = 13/78 (16%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Query: 174 LFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLAL 228
L++ +L + +E ML F+ +R+ + A+V F+ + A +
Sbjct: 3 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 62
Query: 229 HGFKITPTHAMKISFAKK 246
+ I ++I ++++
Sbjct: 63 NFDVI-KGKPVRIMWSQR 79
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 56.4 bits (136), Expect = 3e-11
Identities = 18/78 (23%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 14 VYVTHISSTDLKKS-LYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQG 72
V++ ++++ +KKS + AIFS++G+I+ +G AFV + +A A+ G
Sbjct: 18 VFIGNLNTLVVKKSDVEAIFSKYGKIVGCS-----VHKGFAFVQYVNERNARAAVAGEDG 72
Query: 73 FPFYDKPMRIQYSKTDSD 90
+ + I +
Sbjct: 73 RMIAGQVLDINLAAEPKV 90
Score = 46.0 bits (109), Expect = 1e-07
Identities = 16/87 (18%), Positives = 34/87 (39%), Gaps = 5/87 (5%)
Query: 161 ATAGVPEQPPNQILFLTNL-PEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEM 219
++ + N +F+ NL + + +F+++ + AFV++ NE
Sbjct: 5 SSGKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSV---HKGFAFVQYVNER 61
Query: 220 QSAAAKLALHGFKITPTHAMKISFAKK 246
+ AA G I + I+ A +
Sbjct: 62 NARAAVAGEDGRMI-AGQVLDINLAAE 87
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 55.4 bits (133), Expect = 6e-11
Identities = 17/77 (22%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Query: 169 PPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLAL 228
P N ++ + ++ ++ F+ F E+R V +FV F +A A +++
Sbjct: 16 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIR-VFPEKGYSFVRFSTHESAAHAIVSV 74
Query: 229 HGFKITPTHAMKISFAK 245
+G I H +K + K
Sbjct: 75 NGTTI-EGHVVKCYWGK 90
Score = 53.8 bits (129), Expect = 2e-10
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGF 73
VY I+S + + FS FGQIM+I + +G +FV F SA +A+ S+ G
Sbjct: 21 VYCGGIASGLTDQLMRQTFSPFGQIMEI---RVFPEKGYSFVRFSTHESAAHAIVSVNGT 77
Query: 74 PFYDKPMRIQYSKTDSD 90
++ + K D
Sbjct: 78 TIEGHVVKCYWGKESPD 94
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 104
Score = 53.3 bits (127), Expect = 5e-10
Identities = 14/102 (13%), Positives = 35/102 (34%), Gaps = 9/102 (8%)
Query: 10 VTNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRS 69
S ++ + ++F + + + K + + F SA +A
Sbjct: 10 ACV-ANDDVFSESETRAKFESLFRTYDKDTTF---QYFKSFKRVRINFSNPLSAADARLR 65
Query: 70 MQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQPA 111
+ F K M++ +++T I + + P + P+
Sbjct: 66 LHKTEFLGKEMKLYFAQT-----LHIGSSHLAPPNPDKSGPS 102
Score = 36.7 bits (84), Expect = 4e-04
Identities = 14/83 (16%), Positives = 27/83 (32%), Gaps = 7/83 (8%)
Query: 169 PPNQILFLTNLPEE-----TSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAA 223
+ L ++ + LF + + + + F N + +A
Sbjct: 3 SGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK-RVRINFSNPLSAAD 61
Query: 224 AKLALHGFKITPTHAMKISFAKK 246
A+L LH MK+ FA+
Sbjct: 62 ARLRLH-KTEFLGKEMKLYFAQT 83
>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 52.5 bits (125), Expect = 6e-10
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 168 QPPNQILFLTNLPEETSEMMLSMLFNQFPGFKE-VRLVPNRHDIAFVEFENEMQSAAAKL 226
PP+ L L+N+P SE L +LF+ G + + +A ++ + ++ A +
Sbjct: 7 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALI 66
Query: 227 ALHGFKITPTHAMKISFAK 245
LH + H +++SF+K
Sbjct: 67 DLHNHDLGENHHLRVSFSK 85
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19,
Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 51.9 bits (124), Expect = 1e-09
Identities = 18/86 (20%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
Query: 11 TNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALK----TLKMRGQAFVIFKEIASATNA 66
T+ + V +I ++ + +FS FG++ + K T RG FV F A A
Sbjct: 8 TSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKA 67
Query: 67 LRSM-QGFPFYDKPMRIQYSKTDSDV 91
++ Y + + ++++ ++ V
Sbjct: 68 FNALCHSTHLYGRRLVLEWADSEVTV 93
Score = 50.7 bits (121), Expect = 3e-09
Identities = 18/88 (20%), Positives = 34/88 (38%), Gaps = 6/88 (6%)
Query: 165 VPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHD------IAFVEFENE 218
VP++ + + N+P + ++ + LF+ F K VRL FV+F +
Sbjct: 2 VPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITK 61
Query: 219 MQSAAAKLALHGFKITPTHAMKISFAKK 246
+ A AL + + +A
Sbjct: 62 QDAKKAFNALCHSTHLYGRRLVLEWADS 89
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 50.3 bits (120), Expect = 3e-09
Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMD--IVALKTLKMRGQAFVIFKEIASATNALRSMQ 71
+ V+++ + +F++FG + + ++ + G A V F+ A A A++
Sbjct: 3 LLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYN 62
Query: 72 GFPFYDKPMRIQYSKT 87
G P +PM IQ +
Sbjct: 63 GVPLDGRPMNIQLVTS 78
Score = 48.8 bits (116), Expect = 1e-08
Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 5/75 (6%)
Query: 174 LFLTNLPEETSEMMLSMLFNQFPGFKEVRLV----PNRHDIAFVEFENEMQSAAAKLALH 229
L ++NL S+ + LF +F K+ + A V FE + + A +
Sbjct: 3 LLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYN 62
Query: 230 GFKITPTHAMKISFA 244
G + M I
Sbjct: 63 GVPL-DGRPMNIQLV 76
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 50.4 bits (120), Expect = 3e-09
Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Query: 11 TNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKM---RGQAFVIFKEIASATNAL 67
TN + V ++ + LYA+F G I ++ K G AFV F + A+
Sbjct: 3 TN-LIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAI 61
Query: 68 RSMQGFPFYDKPMRIQYSK 86
+ + G +K +++ Y++
Sbjct: 62 KVLNGITVRNKRLKVSYAR 80
Score = 43.4 bits (102), Expect = 1e-06
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Query: 174 LFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLAL 228
L + LP++ ++ L LF R++ + + AFV+F +EM S A L
Sbjct: 5 LIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVL 64
Query: 229 HGFKITPTHAMKISFAK 245
+G + +K+S+A+
Sbjct: 65 NGITV-RNKRLKVSYAR 80
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8,
ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 50.5 bits (120), Expect = 4e-09
Identities = 15/84 (17%), Positives = 29/84 (34%), Gaps = 7/84 (8%)
Query: 169 PPNQILFLT--NLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKL 226
Q L + L S L + + + +P +F + +S A +
Sbjct: 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALL-MPPNKPYSFARYRTTEESKRAYV 74
Query: 227 ALHGFKITPTHAMKI----SFAKK 246
L+G ++ KI +F +K
Sbjct: 75 TLNGKEVVDDLGQKITLYLNFVEK 98
Score = 33.2 bits (75), Expect = 0.005
Identities = 7/68 (10%), Positives = 22/68 (32%), Gaps = 3/68 (4%)
Query: 11 TNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSM 70
+ V + + + L + + G + + + +F ++ + A ++
Sbjct: 20 SLVVANGGLGNGVSRNQLLPVLEKCGLVDAL---LMPPNKPYSFARYRTTEESKRAYVTL 76
Query: 71 QGFPFYDK 78
G D
Sbjct: 77 NGKEVVDD 84
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 49.7 bits (118), Expect = 6e-09
Identities = 18/81 (22%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVAL----KTLKMRGQAFVIFKEIASATNALRS 69
+++ ++ +K LY FS FG I+ + T +G AF+ F ++ A+ +
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 60
Query: 70 MQGFPFYDKPMRIQYSKTDSD 90
M G ++P+ + Y+
Sbjct: 61 MNGQYLCNRPITVSYAFKKDS 81
Score = 40.1 bits (93), Expect = 1e-05
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 7/79 (8%)
Query: 174 LFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHD------IAFVEFENEMQSAAAKLA 227
+F+ NL E E +L F+ F + + D AF+ F + S AA A
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 60
Query: 228 LHGFKITPTHAMKISFAKK 246
++G + + +S+A K
Sbjct: 61 MNGQYL-CNRPITVSYAFK 78
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19,
Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 48.5 bits (115), Expect = 2e-08
Identities = 16/78 (20%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Query: 15 YVTHISSTDLKKSLYAIFSQFGQIMDIVAL------KTLKMRGQAFVIFKEIASATNALR 68
++ +++ + +++L +FS+ G I L G FV +K+ A AL+
Sbjct: 2 FIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALK 61
Query: 69 SMQGFPFYDKPMRIQYSK 86
+QG + ++ S+
Sbjct: 62 QLQGHTVDGHKLEVRISE 79
Score = 41.9 bits (98), Expect = 3e-06
Identities = 17/81 (20%), Positives = 35/81 (43%), Gaps = 9/81 (11%)
Query: 174 LFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDI--------AFVEFENEMQSAAAK 225
LF+ NL T+E L +F++ K + ++ FVE++ Q+ A
Sbjct: 1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKAL 60
Query: 226 LALHGFKITPTHAMKISFAKK 246
L G + H +++ +++
Sbjct: 61 KQLQGHTV-DGHKLEVRISER 80
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 48.4 bits (115), Expect = 2e-08
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVALK---TLKMRGQAFVIFKEIASATNALRSM 70
+YV ++S ++ +Y +FS+ G I I+ G FV + A A NA+R +
Sbjct: 10 LYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYI 69
Query: 71 QGFPFYDKPMRIQYSKTDSD 90
G D+ +R + +
Sbjct: 70 NGTRLDDRIIRTDWDAGFKE 89
Score = 45.3 bits (107), Expect = 3e-07
Identities = 13/77 (16%), Positives = 34/77 (44%), Gaps = 6/77 (7%)
Query: 174 LFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDI-----AFVEFENEMQSAAAKLAL 228
L++ NL T+E + LF++ K++ + ++ FVE+ + + A +
Sbjct: 10 LYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYI 69
Query: 229 HGFKITPTHAMKISFAK 245
+G ++ ++ +
Sbjct: 70 NGTRL-DDRIIRTDWDA 85
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 48.0 bits (114), Expect = 2e-08
Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQI---MDIVALKTLKMRGQAFVIFKEIASATNALRSM 70
+YVT++ T L IF ++G I + T + RG AFV + + A A+ ++
Sbjct: 9 LYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISAL 68
Query: 71 QGFPF--YDKPMRIQY 84
+P+ ++
Sbjct: 69 NNVIPEGGSQPLSVRL 84
Score = 48.0 bits (114), Expect = 2e-08
Identities = 15/84 (17%), Positives = 36/84 (42%), Gaps = 6/84 (7%)
Query: 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQS 221
E + L++TNLP ++ L +F ++ + ++ ++ +AFV + ++
Sbjct: 2 ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEA 61
Query: 222 AAAKLALHGFKIT-PTHAMKISFA 244
A AL+ + + + A
Sbjct: 62 QEAISALNNVIPEGGSQPLSVRLA 85
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 48.1 bits (114), Expect = 2e-08
Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 2/73 (2%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGF 73
+ ++S + L +F +I + + K +G A++ FK A A L QG
Sbjct: 19 LLAKNLSFNITEDELKEVFEDALEIRLVS--QDGKSKGIAYIEFKSEADAEKNLEEKQGA 76
Query: 74 PFYDKPMRIQYSK 86
+ + + Y+
Sbjct: 77 EIDGRSVSLYYTG 89
Score = 45.4 bits (107), Expect = 2e-07
Identities = 14/81 (17%), Positives = 30/81 (37%), Gaps = 1/81 (1%)
Query: 166 PEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAK 225
+ + L NL +E L +F + V IA++EF++E +
Sbjct: 11 KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNL 70
Query: 226 LALHGFKITPTHAMKISFAKK 246
G +I ++ + + +
Sbjct: 71 EEKQGAEI-DGRSVSLYYTGE 90
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 47.7 bits (113), Expect = 3e-08
Identities = 13/79 (16%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVALK---TLKMRGQAFVIFKEIASATNALRSM 70
+++ + + + + + FG + +K T +G AF + +I A+ +
Sbjct: 4 LFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 63
Query: 71 QGFPFYDKPMRIQYSKTDS 89
G DK + +Q + +
Sbjct: 64 NGMQLGDKKLLVQRASVGA 82
Score = 43.5 bits (102), Expect = 9e-07
Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 6/77 (7%)
Query: 174 LFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRH-----DIAFVEFENEMQSAAAKLAL 228
LF+ LP ++ + L F K LV + AF E+ + + A L
Sbjct: 4 LFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 63
Query: 229 HGFKITPTHAMKISFAK 245
+G ++ + + A
Sbjct: 64 NGMQL-GDKKLLVQRAS 79
>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 48.2 bits (114), Expect = 4e-08
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 171 NQILFLTNL-PEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALH 229
N +L ++NL PE + L +LF + + V+++ N+ + A V+ + Q+ A L+
Sbjct: 2 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLN 61
Query: 230 GFKITPTHAMKISFAKK 246
G K+ ++I+ +K
Sbjct: 62 GHKLH-GKPIRITLSKH 77
Score = 38.6 bits (89), Expect = 9e-05
Identities = 17/77 (22%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 14 VYVTHISSTDL-KKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQG 72
+ V++++ + +SL+ +F +G + + L + A V + A A+ + G
Sbjct: 5 LLVSNLNPERVTPQSLFILFGVYGDVQRVKILF--NKKENALVQMADGNQAQLAMSHLNG 62
Query: 73 FPFYDKPMRIQYSKTDS 89
+ KP+RI SK +
Sbjct: 63 HKLHGKPIRITLSKHQN 79
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 47.7 bits (113), Expect = 4e-08
Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVAL---KTLKMRGQAFVIFKEIASATNALRSM 70
VYV + + L+ +F Q G +++ T + +G FV F A A++ M
Sbjct: 12 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 71
Query: 71 QGFPFYDKPMRIQYSKTDS 89
Y KP+R+ + +
Sbjct: 72 DMIKLYGKPIRVNKASAHN 90
Score = 46.9 bits (111), Expect = 7e-08
Identities = 18/87 (20%), Positives = 36/87 (41%), Gaps = 6/87 (6%)
Query: 165 VPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEM 219
+ E+ + +++ L E+ SE +L LF Q + +R FVEF +E
Sbjct: 3 ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 62
Query: 220 QSAAAKLALHGFKITPTHAMKISFAKK 246
+ A + K+ ++++ A
Sbjct: 63 DADYAIKIMDMIKL-YGKPIRVNKASA 88
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 47.3 bits (112), Expect = 5e-08
Identities = 11/78 (14%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGF 73
++V ++ ++ + +F ++G+ ++ K +G F+ + A A +
Sbjct: 11 LFVGNLPPDITEEEMRKLFEKYGKAGEV---FIHKDKGFGFIRLETRTLAEIAKVELDNM 67
Query: 74 PFYDKPMRIQYSKTDSDV 91
P K +R++++ + +
Sbjct: 68 PLRGKQLRVRFACHSASL 85
Score = 45.7 bits (108), Expect = 2e-07
Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Query: 174 LFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKI 233
LF+ NLP + +E + LF ++ EV + F+ E + AK+ L +
Sbjct: 11 LFVGNLPPDITEEEMRKLFEKYGKAGEVF-IHKDKGFGFIRLETRTLAEIAKVELDNMPL 69
Query: 234 TPTHAMKISFAKK 246
+++ FA
Sbjct: 70 -RGKQLRVRFACH 81
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 97
Score = 47.0 bits (111), Expect = 7e-08
Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 164 GVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAA 223
G + P L++ L TS L+ F++F + + A++++E+ + A
Sbjct: 10 GYGKANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTID-HVKGDSFAYIQYESLDAAQA 68
Query: 224 AKLALHGFKIT-PTHAMKISFAK 245
A + GF + P +++ FAK
Sbjct: 69 ACAKMRGFPLGGPDRRLRVDFAK 91
>d1jmta_ d.58.7.3 (A:) U2AF35
(35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 47.0 bits (111), Expect = 8e-08
Identities = 10/74 (13%), Positives = 28/74 (37%), Gaps = 2/74 (2%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVALK--TLKMRGQAFVIFKEIASATNALRSMQ 71
V + ++ + ++G++ ++ + G +V F+ A A+ +
Sbjct: 30 VEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLN 89
Query: 72 GFPFYDKPMRIQYS 85
F +P+ + S
Sbjct: 90 NRWFNGQPIHAELS 103
Score = 38.9 bits (90), Expect = 7e-05
Identities = 11/81 (13%), Positives = 32/81 (39%), Gaps = 6/81 (7%)
Query: 159 PMATAGVPEQPPNQI--LFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHD----IAF 212
P ++ + + + + + +E E + + + ++ +E+ + N D +
Sbjct: 13 PQNSSQSADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVY 72
Query: 213 VEFENEMQSAAAKLALHGFKI 233
V+F E + A + L+
Sbjct: 73 VKFRREEDAEKAVIDLNNRWF 93
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 46.2 bits (109), Expect = 1e-07
Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVAL-KTLKMRGQAFVIFKEIASATNALRSMQG 72
+YV ++S + + +FSQ G + + FV F E A AL +M G
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNG 70
Query: 73 FPFYDKPMRIQYSKTDSD 90
K +++ ++ T S
Sbjct: 71 RKILGKEVKVNWATTPSS 88
Score = 46.2 bits (109), Expect = 1e-07
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR---HDIAFVEFENEMQSAA 223
+ + L++ NL + +E+++ LF+Q K +++ FVEF +AA
Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAA 63
Query: 224 AKLALHGFKITPTHAMKISFAKK 246
A A++G KI +K+++A
Sbjct: 64 ALAAMNGRKI-LGKEVKVNWATT 85
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 46.6 bits (110), Expect = 1e-07
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGF 73
+ V ++ L+ IFS+FG ++ I+ T + QA + + + SA +A S+ G
Sbjct: 10 IIVENLFYPVTLDVLHQIFSKFGTVLKII-TFTKNNQFQALLQYADPVSAQHAKLSLDGQ 68
Query: 74 PFYD--KPMRIQYSKTDSDVISK 94
Y+ +RI +SK S +
Sbjct: 69 NIYNACCTLRIDFSKLTSLNVKY 91
Score = 45.4 bits (107), Expect = 4e-07
Identities = 17/84 (20%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 165 VPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRH-DIAFVEFENEMQSAA 223
+ Q P + + NL + +L +F++F ++ + A +++ + + +
Sbjct: 1 MAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQH 60
Query: 224 AKLALHGFKI-TPTHAMKISFAKK 246
AKL+L G I ++I F+K
Sbjct: 61 AKLSLDGQNIYNACCTLRIDFSKL 84
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 45.8 bits (108), Expect = 2e-07
Identities = 17/77 (22%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 174 LFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHD-----IAFVEFENEMQSAAAKLAL 228
L+++ LP+ ++ L LF+Q+ R++ ++ + F+ F+ +++ A L
Sbjct: 9 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 68
Query: 229 HGFKIT-PTHAMKISFA 244
+G K + T + + FA
Sbjct: 69 NGQKPSGATEPITVKFA 85
Score = 40.8 bits (95), Expect = 9e-06
Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKM---RGQAFVIFKEIASATNALRSM 70
+YV+ + T +K L +FSQ+G+I+ L RG F+ F + A A++ +
Sbjct: 9 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 68
Query: 71 QGFPFY--DKPMRIQYS 85
G +P+ ++++
Sbjct: 69 NGQKPSGATEPITVKFA 85
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 45.5 bits (107), Expect = 2e-07
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 169 PPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAA 223
PN L + L T+E L +F+++ +V +V ++ AFV FEN +
Sbjct: 7 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKE 66
Query: 224 AKLALHGFKI 233
AK +G ++
Sbjct: 67 AKERANGMEL 76
Score = 42.8 bits (100), Expect = 2e-06
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 11 TNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVAL---KTLKMRGQAFVIFKEIASATNAL 67
+ V +S ++ L +FS++G I D+ + ++ + RG AFV F+ + A A
Sbjct: 9 NCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAK 68
Query: 68 RSMQGFPFYDKPMRI 82
G + +R+
Sbjct: 69 ERANGMELDGRRIRV 83
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 45.8 bits (108), Expect = 2e-07
Identities = 14/73 (19%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGF 73
+YV ++ + ++ + F+ + K+R AFV F A A++++ G
Sbjct: 11 LYVRNLMLSTSEEMIEKEFNNIKPGAVE---RVKKIRDYAFVHFSNREDAVEAMKALNGK 67
Query: 74 PFYDKPMRIQYSK 86
P+ + +K
Sbjct: 68 VLDGSPIEVTLAK 80
Score = 45.0 bits (106), Expect = 3e-07
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 173 ILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFK 232
IL++ NL TSE M+ FN R+ R AFV F N + A AL+G
Sbjct: 10 ILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRD-YAFVHFSNREDAVEAMKALNGKV 68
Query: 233 ITPTHAMKISFAK 245
+ ++++ AK
Sbjct: 69 L-DGSPIEVTLAK 80
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 45.4 bits (107), Expect = 2e-07
Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDI-VALKTLKMRGQAFVIFKEIASATNALRSMQG 72
+++ ++ + K+LY FS FG I+ V +G FV F+ +A A+ M G
Sbjct: 11 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 70
Query: 73 FPFYDKPMRIQYSKTDSD 90
D+ + + K+ +
Sbjct: 71 MLLNDRKVFVGRFKSRKE 88
Score = 41.9 bits (98), Expect = 3e-06
Identities = 14/76 (18%), Positives = 28/76 (36%), Gaps = 4/76 (5%)
Query: 174 LFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR---HDIAFVEFENEMQSAAAKLALHG 230
+F+ NL + L F+ F ++V + FV FE + + A ++G
Sbjct: 11 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 70
Query: 231 FKITPTHAMKISFAKK 246
+ + + K
Sbjct: 71 MLL-NDRKVFVGRFKS 85
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 45.0 bits (106), Expect = 3e-07
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVALK---TLKMRGQAFVIFKEIASATNALRSM 70
+ VT++S + L +F FG I I K T + +G AF+ F A A+ +
Sbjct: 11 IRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGV 70
Query: 71 QGFPFYDKPMRIQYSKTDSD 90
GF + + ++++K ++
Sbjct: 71 SGFGYDHLILNVEWAKPSTN 90
Score = 41.2 bits (96), Expect = 7e-06
Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 6/84 (7%)
Query: 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRH-----DIAFVEFENEMQS 221
N + +TNL E+T E L LF F + L ++ AF+ F +
Sbjct: 4 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDA 63
Query: 222 AAAKLALHGFKITPTHAMKISFAK 245
A A + GF + + +AK
Sbjct: 64 ARAIAGVSGFGY-DHLILNVEWAK 86
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein
L-like {Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 45.6 bits (107), Expect = 3e-07
Identities = 12/81 (14%), Positives = 24/81 (29%), Gaps = 2/81 (2%)
Query: 166 PEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAK 225
+ + ++ + L E E L +F V + A VEFEN +
Sbjct: 10 HKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVM-MMPFKRQALVEFENIDSAKECV 68
Query: 226 LALHGFKITP-THAMKISFAK 245
+ +++
Sbjct: 69 TFAADVPVYIAGQQAFFNYST 89
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 44.7 bits (105), Expect = 4e-07
Identities = 15/79 (18%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Query: 11 TNFVYVTHISSTDLKKSLYAIFSQFGQI---MDIVALKTLKMRGQAFVIFKEIASATNAL 67
TN + V ++ ++ ++F G+I + T + G FV + + A A+
Sbjct: 3 TN-LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 61
Query: 68 RSMQGFPFYDKPMRIQYSK 86
++ G K +++ Y++
Sbjct: 62 NTLNGLRLQTKTIKVSYAR 80
Score = 40.5 bits (94), Expect = 1e-05
Identities = 16/77 (20%), Positives = 33/77 (42%), Gaps = 6/77 (7%)
Query: 174 LFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPN-----RHDIAFVEFENEMQSAAAKLAL 228
L + LP+ ++ LF + +LV + FV + + + A L
Sbjct: 5 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 64
Query: 229 HGFKITPTHAMKISFAK 245
+G ++ T +K+S+A+
Sbjct: 65 NGLRL-QTKTIKVSYAR 80
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 44.7 bits (105), Expect = 5e-07
Identities = 15/93 (16%), Positives = 38/93 (40%), Gaps = 11/93 (11%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIV-----ALKTLKMRGQAFVIFKEIASATNALR 68
+++ I ++ + ++ + + V A +K RG AFV ++ +A A R
Sbjct: 4 LFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARR 63
Query: 69 SMQG--FPFYDKPMRIQYSKT----DSDVISKI 95
+ + + + +++ D DV+ +
Sbjct: 64 KLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV 96
Score = 36.2 bits (83), Expect = 5e-04
Identities = 18/83 (21%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
Query: 171 NQILFLTNLPEETSEMMLSMLFNQF-PGFKEVRLVPNRHD------IAFVEFENEMQSAA 223
N LF+ +P+ + + G +V + + D AFVE+E+ +A
Sbjct: 1 NCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAM 60
Query: 224 AKLALHGFKITP-THAMKISFAK 245
A+ L +I H + + +A+
Sbjct: 61 ARRKLMPGRIQLWGHQIAVDWAE 83
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 44.2 bits (104), Expect = 5e-07
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Query: 11 TNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSM 70
N +YV T L FS FG I+D+ R AFV ++++ SA A+ +
Sbjct: 5 GNTLYVYGEDMTP--TLLRGAFSPFGNIIDL---SMDPPRNCAFVTYEKMESADQAVAEL 59
Query: 71 QGFPFYDKPMRIQYSK 86
G +++ ++
Sbjct: 60 NGTQVESVQLKVNIAR 75
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 44.3 bits (104), Expect = 6e-07
Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 6/82 (7%)
Query: 168 QPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHD-----IAFVEFENEMQSA 222
+P I+ + N+P S + F + + A V FE+ ++
Sbjct: 6 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEAT 65
Query: 223 AAKLALHGFKITPTHAMKISFA 244
AA + L+ I + +K+
Sbjct: 66 AAVIDLNDRPIG-SRKVKLVLG 86
Score = 35.8 bits (82), Expect = 5e-04
Identities = 14/73 (19%), Positives = 28/73 (38%), Gaps = 3/73 (4%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVAL---KTLKMRGQAFVIFKEIASATNALRSM 70
+ V ++ T + F + I V L + G+A V F+ AT A+ +
Sbjct: 12 IKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDL 71
Query: 71 QGFPFYDKPMRIQ 83
P + +++
Sbjct: 72 NDRPIGSRKVKLV 84
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 43.9 bits (103), Expect = 9e-07
Identities = 21/103 (20%), Positives = 41/103 (39%), Gaps = 13/103 (12%)
Query: 148 QPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR 207
+ PV +P PE+ + +F L L F+ ++VR++ +R
Sbjct: 1 KSPVREPVDNLS------PEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDR 54
Query: 208 HD-----IAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAK 245
+ IA+VEF QS + L G ++ + + ++
Sbjct: 55 NSRRSKGIAYVEFCEI-QSVPLAIGLTGQRL-LGVPIIVQASQ 95
Score = 38.9 bits (90), Expect = 6e-05
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVALK---TLKMRGQAFVIFKEIASATNALRSM 70
V+ +++ + L FS G++ D+ + + + +G A+V F EI S A+ +
Sbjct: 21 VFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GL 79
Query: 71 QGFPFYDKPMRIQYSK 86
G P+ +Q S+
Sbjct: 80 TGQRLLGVPIIVQASQ 95
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 43.5 bits (102), Expect = 1e-06
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVALK---TLKMRGQAFVIFKEIASATNALRSM 70
+YV ++ K L+A F FG I DI T K RG AFV F+ A A+ +M
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 71 QGFPFYDKPMRIQYSK 86
+ + +R+ +K
Sbjct: 68 NESELFGRTIRVNLAK 83
Score = 37.7 bits (87), Expect = 1e-04
Identities = 18/82 (21%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 169 PPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAA 223
++L++ L EE + +L F F ++++ + AFVEFE +AA
Sbjct: 3 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAA 62
Query: 224 AKLALHGFKITPTHAMKISFAK 245
A ++ ++ ++++ AK
Sbjct: 63 AIDNMNESEL-FGRTIRVNLAK 83
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 99
Score = 43.8 bits (103), Expect = 1e-06
Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 23 DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRI 82
++++ L S+FGQI ++ G A V F++ A ++++ G F + +
Sbjct: 31 EIREDLRVECSKFGQIRKLLLFDR-HPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITA 89
Query: 83 QYS--KTD 88
Q TD
Sbjct: 90 QAWDGTTD 97
Score = 31.0 bits (70), Expect = 0.037
Identities = 12/81 (14%), Positives = 29/81 (35%), Gaps = 13/81 (16%)
Query: 166 PEQP-PNQILFLTNL--PEE---------TSEMMLSMLFNQFPGFKEVRLVPNRHD-IAF 212
P + +++ + N+ P + L + ++F +++ L D +A
Sbjct: 2 PSRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVAS 61
Query: 213 VEFENEMQSAAAKLALHGFKI 233
V F + ++ L G
Sbjct: 62 VSFRDPEEADYCIQTLDGRWF 82
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 43.1 bits (101), Expect = 1e-06
Identities = 14/73 (19%), Positives = 29/73 (39%), Gaps = 3/73 (4%)
Query: 174 LFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKI 233
+F+ + +E L F+Q+ +V + AFV F ++ + + K
Sbjct: 8 VFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGEDLIIK- 66
Query: 234 TPTHAMKISFAKK 246
++ IS A+
Sbjct: 67 --GISVHISNAEP 77
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A
{Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 42.8 bits (100), Expect = 1e-06
Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 4/76 (5%)
Query: 12 NFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQ 71
N +Y+ ++S L +F + + L G AFV + + A A+ ++
Sbjct: 2 NKLYIGNLSPAVTADDLRQLFGDRKLPLAG---QVLLKSGYAFVDYPDQNWAIRAIETLS 58
Query: 72 G-FPFYDKPMRIQYSK 86
G + K M + YS
Sbjct: 59 GKVELHGKIMEVDYSV 74
Score = 39.3 bits (91), Expect = 3e-05
Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 1/72 (1%)
Query: 174 LFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKI 233
L++ NL + L LF V + AFV++ ++ + A L G
Sbjct: 4 LYIGNLSPAVTADDLRQLFGDR-KLPLAGQVLLKSGYAFVDYPDQNWAIRAIETLSGKVE 62
Query: 234 TPTHAMKISFAK 245
M++ ++
Sbjct: 63 LHGKIMEVDYSV 74
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 42.8 bits (100), Expect = 2e-06
Identities = 13/80 (16%), Positives = 30/80 (37%), Gaps = 4/80 (5%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGF 73
+ V ++ + ++ + + + + AFV A NA++ +
Sbjct: 8 ILVKNLPQDSNCQEVHDLLKDYDLKY----CYVDRNKRTAFVTLLNGEQAQNAIQMFHQY 63
Query: 74 PFYDKPMRIQYSKTDSDVIS 93
F K + +Q TD+ + S
Sbjct: 64 SFRGKDLIVQLQPTDALLCS 83
Score = 39.7 bits (92), Expect = 3e-05
Identities = 12/73 (16%), Positives = 26/73 (35%), Gaps = 3/73 (4%)
Query: 174 LFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKI 233
+ + NLP++++ + L + K + N+ FV N Q+ A H +
Sbjct: 8 ILVKNLPQDSNCQEVHDLLKDY-DLKYCYVDRNKRTA-FVTLLNGEQAQNAIQMFHQYSF 65
Query: 234 TPTHAMKISFAKK 246
+ +
Sbjct: 66 R-GKDLIVQLQPT 77
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 41.9 bits (98), Expect = 3e-06
Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 6/65 (9%)
Query: 174 LFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHD-----IAFVEFENEMQSAAAKLAL 228
+F+ L +T++ L F QF KE ++ + FV F ++ LA
Sbjct: 3 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQ-AGVDKVLAQ 61
Query: 229 HGFKI 233
++
Sbjct: 62 SRHEL 66
Score = 38.8 bits (90), Expect = 4e-05
Identities = 15/74 (20%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVALK---TLKMRGQAFVIFKEIASATNALRSM 70
+++ +S ++ L F QFG++ + + ++ T + RG FV F + A L +
Sbjct: 3 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVL-AQ 61
Query: 71 QGFPFYDKPMRIQY 84
K + +
Sbjct: 62 SRHELDSKTIDPKV 75
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 42.0 bits (98), Expect = 4e-06
Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMD-IVALKTLKMRGQAFVIFKEIASATNALRSMQG 72
++V++I L +F QFG+I+D + +G FV F+ A A A + G
Sbjct: 14 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHG 73
Query: 73 FPFYDKPMRIQYSK 86
+ + + +
Sbjct: 74 TVVEGRKIEVNNAT 87
Score = 40.0 bits (93), Expect = 2e-05
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Query: 174 LFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRH---DIAFVEFENEMQSAAAKLALHG 230
L ++N+P + L +F QF +V ++ N FV FEN + A+ LHG
Sbjct: 14 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHG 73
Query: 231 FKITPTHAMKISFAKK 246
+ ++++ A
Sbjct: 74 TVV-EGRKIEVNNATA 88
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 99
Score = 42.0 bits (98), Expect = 5e-06
Identities = 17/83 (20%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Query: 11 TNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMR---GQAFVIFKEIASATNAL 67
+ ++V ++S T ++ L +FS +G + ++ + G AFV F A A
Sbjct: 8 SGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAY 67
Query: 68 RSMQGFPFYDKPMRIQYSKTDSD 90
+ G F + + + S +
Sbjct: 68 AEVDGQVFQGRMLHVLPSTIKKE 90
Score = 40.1 bits (93), Expect = 2e-05
Identities = 16/78 (20%), Positives = 27/78 (34%), Gaps = 6/78 (7%)
Query: 174 LFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLAL 228
LF+ NL +SE L LF+ + E+ + AFV F + A +
Sbjct: 11 LFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEV 70
Query: 229 HGFKITPTHAMKISFAKK 246
G + + +
Sbjct: 71 DGQVF-QGRMLHVLPSTI 87
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 41.7 bits (97), Expect = 5e-06
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVALK---TLKMRGQAFVIFKEIASATNALRSM 70
++V +S ++SL +FS++GQI ++V +K T + RG FV F+ I A +A+ +M
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 71 QGFPFYDKPMRIQYSKTDSD 90
G + +R+ + SD
Sbjct: 68 NGKSVDGRQIRVDQAGKSSD 87
Score = 36.3 bits (83), Expect = 4e-04
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 174 LFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDI-----AFVEFENEMQSAAAKLAL 228
LF+ L +T+E L +F+++ EV +V +R FV FEN + A +A+
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 229 HGFKITPTHAMKISFAKK 246
+G + +++ A K
Sbjct: 68 NGKSV-DGRQIRVDQAGK 84
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 88
Score = 41.6 bits (97), Expect = 6e-06
Identities = 13/77 (16%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKM---RGQAFVIFKEIASATNALRSM 70
++VT I + + F +G+I +I + +G A V ++ A A ++
Sbjct: 10 LFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEAL 69
Query: 71 QGFPFYDKPMRIQYSKT 87
G + +++ +
Sbjct: 70 NGAEIMGQTIQVDWCFV 86
Score = 40.5 bits (94), Expect = 1e-05
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 173 ILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHD-----IAFVEFENEMQSAAAKLA 227
ILF+T++ EE E + F + K + L +R A VE+E Q+ AAK A
Sbjct: 9 ILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEA 68
Query: 228 LHGFKITPTHAMKISFAKK 246
L+G +I +++ +
Sbjct: 69 LNGAEI-MGQTIQVDWCFV 86
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 41.7 bits (97), Expect = 6e-06
Identities = 15/85 (17%), Positives = 32/85 (37%), Gaps = 11/85 (12%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVAL-----------KTLKMRGQAFVIFKEIAS 62
+YV ++ + L F Q G + +T K +G A V +++ +
Sbjct: 11 IYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPT 70
Query: 63 ATNALRSMQGFPFYDKPMRIQYSKT 87
A A+ G F +++ ++
Sbjct: 71 AKAAVEWFDGKDFQGSKLKVSLARK 95
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 41.6 bits (97), Expect = 7e-06
Identities = 20/91 (21%), Positives = 40/91 (43%), Gaps = 6/91 (6%)
Query: 161 ATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEF 215
A E P LF+ +LP+E + L +F F ++ ++ FV +
Sbjct: 8 AAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSY 67
Query: 216 ENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
+N + + AA +++GF+I +K+ +
Sbjct: 68 DNPVSAQAAIQSMNGFQI-GMKRLKVQLKRS 97
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma
cruzi [TaxId: 5693]}
Length = 139
Score = 41.0 bits (95), Expect = 2e-05
Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 13/115 (11%)
Query: 137 QQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSEMMLSMLFNQFP 196
Q Q+Q L QQ Q PP M PE + L + +P E+ L LF ++
Sbjct: 15 QTAQLQQLQQQQQ---QHIPPTQM----NPEPDVLRNLMVNYIPTTVDEVQLRQLFERYG 67
Query: 197 GFKEVRLVPNRHD-----IAFVEFENEMQSAAAKLALHGFKITPTHAMKISFAKK 246
+ V++V +R FV+F++ + A L+GF I +K++ A
Sbjct: 68 PIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNI-LNKRLKVALAAS 121
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 39.2 bits (91), Expect = 3e-05
Identities = 13/63 (20%), Positives = 20/63 (31%), Gaps = 5/63 (7%)
Query: 174 LFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDI-----AFVEFENEMQSAAAKLAL 228
L + LP +T+E L F+ F V++ + FV F
Sbjct: 11 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQR 70
Query: 229 HGF 231
H
Sbjct: 71 HMI 73
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 39.4 bits (91), Expect = 5e-05
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 6/82 (7%)
Query: 169 PPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAA 223
PN++L+L NL +E L LF +F K + AF+ F N+ +
Sbjct: 16 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQ 75
Query: 224 AKLALHGFKITPTHAMKISFAK 245
A ++G+K+ + I F K
Sbjct: 76 ALHLVNGYKL-YGKILVIEFGK 96
Score = 37.5 bits (86), Expect = 2e-04
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 11 TNFVYVTHISSTDLKKSLYAIFSQFGQIMDIVAL---KTLKMRGQAFVIFKEIASATNAL 67
+Y+ ++S ++ L ++F++F + T +MRGQAF+ F A AL
Sbjct: 18 NKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQAL 77
Query: 68 RSMQGFPFYDKPMRIQYSKTDSD 90
+ G+ Y K + I++ K
Sbjct: 78 HLVNGYKLYGKILVIEFGKNKKQ 100
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing
factor PRP24 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 81
Score = 38.2 bits (88), Expect = 6e-05
Identities = 7/76 (9%), Positives = 28/76 (36%), Gaps = 3/76 (3%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQI---MDIVALKTLKMRGQAFVIFKEIASATNALRSM 70
+++T+ + ++++ + + + + +L+ R A++ A + +
Sbjct: 4 LWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKL 63
Query: 71 QGFPFYDKPMRIQYSK 86
G + + S
Sbjct: 64 NGLKIEGYTLVTKVSN 79
Score = 32.5 bits (73), Expect = 0.007
Identities = 11/77 (14%), Positives = 28/77 (36%), Gaps = 6/77 (7%)
Query: 174 LFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLAL 228
L++TN P ++ + L +P+ A+++ ++ + L
Sbjct: 4 LWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKL 63
Query: 229 HGFKITPTHAMKISFAK 245
+G KI + + +
Sbjct: 64 NGLKI-EGYTLVTKVSN 79
>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 89
Score = 38.5 bits (89), Expect = 7e-05
Identities = 15/78 (19%), Positives = 29/78 (37%), Gaps = 6/78 (7%)
Query: 14 VYVTHI-SSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALR--SM 70
V++ +L+ L + FG I + L +AF+ A A+ +
Sbjct: 11 VHIMDFQRGKNLRYQLLQLVEPFGVISNH---LILNKINEAFIEMATTEDAQAAVDYYTT 67
Query: 71 QGFPFYDKPMRIQYSKTD 88
+ KP+R+ S+
Sbjct: 68 TPALVFGKPVRVHLSQKY 85
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 37.7 bits (87), Expect = 1e-04
Identities = 12/65 (18%), Positives = 25/65 (38%), Gaps = 6/65 (9%)
Query: 174 LFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLAL 228
+F+ L +T++ L F++F + L + FV F+ +S +
Sbjct: 2 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKES-ESVDKVMDQ 60
Query: 229 HGFKI 233
K+
Sbjct: 61 KEHKL 65
Score = 31.9 bits (72), Expect = 0.012
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVAL---KTLKMRGQAFVIFKEIASATNALRSM 70
+++ +S KK L FS+FG+++D T + RG FV+FKE S +
Sbjct: 2 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMD-Q 60
Query: 71 QGFPFYDKPMRIQ 83
+ K + +
Sbjct: 61 KEHKLNGKVIDPK 73
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 38.2 bits (88), Expect = 1e-04
Identities = 13/81 (16%), Positives = 36/81 (44%), Gaps = 9/81 (11%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMD--------IVALKTLKMRGQAFVIFKEIASATN 65
+YV +I ++++ F+ ++ ++A++ + + AF+ F+ + T
Sbjct: 4 LYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQ 63
Query: 66 ALRSMQGFPFYDKPMRIQYSK 86
A+ G F + ++I+
Sbjct: 64 AMA-FDGIIFQGQSLKIRRPH 83
Score = 30.5 bits (68), Expect = 0.050
Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 11/70 (15%)
Query: 174 LFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDI----------AFVEFENEMQSAA 223
L++ N+P +E + FN + P + AF+EF + ++
Sbjct: 4 LYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQ 63
Query: 224 AKLALHGFKI 233
A +A G
Sbjct: 64 A-MAFDGIIF 72
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 37.3 bits (86), Expect = 2e-04
Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 8/73 (10%)
Query: 166 PEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRH-----DIAFVEFENEMQ 220
PEQ + LF+ L ET++ L F Q+ + ++ + + FV + +
Sbjct: 3 PEQL--RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 60
Query: 221 SAAAKLALHGFKI 233
AA + K+
Sbjct: 61 VDAA-MNARPHKV 72
Score = 30.4 bits (68), Expect = 0.039
Identities = 14/73 (19%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVAL---KTLKMRGQAFVIFKEIASATNALRSM 70
+++ +S +SL + F Q+G + D V + T + RG FV + + A+
Sbjct: 9 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN-A 67
Query: 71 QGFPFYDKPMRIQ 83
+ + + +
Sbjct: 68 RPHKVDGRVVEPK 80
>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 111
Score = 37.6 bits (86), Expect = 2e-04
Identities = 15/80 (18%), Positives = 27/80 (33%), Gaps = 2/80 (2%)
Query: 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKL 226
++ NLP T + F++F V +P A VEF +++ A
Sbjct: 6 SGRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVL-LPEGGITAIVEFLEPLEARKAFR 64
Query: 227 ALHGFKITPTHAMKISFAKK 246
L + + +A
Sbjct: 65 HLAY-SKFHHVPLYLEWAPI 83
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 36.6 bits (84), Expect = 2e-04
Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 6/65 (9%)
Query: 174 LFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLAL 228
+F+ L T+ + F QF + L+ ++ FV FE+E +
Sbjct: 2 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESE-DIVEKVCEI 60
Query: 229 HGFKI 233
H +I
Sbjct: 61 HFHEI 65
>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 113
Score = 37.5 bits (86), Expect = 2e-04
Identities = 11/71 (15%), Positives = 25/71 (35%), Gaps = 1/71 (1%)
Query: 164 GVPEQPPN-QILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSA 222
G E+ + F +L ++T L +LF+ K + V + + E ++
Sbjct: 3 GSLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEAL 62
Query: 223 AAKLALHGFKI 233
+ +
Sbjct: 63 GKAKDANNGNL 73
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins
A2/B1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 37.0 bits (85), Expect = 3e-04
Identities = 14/80 (17%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVALK---TLKMRGQAFVIFKEIASATNALRSM 70
+++ +S ++SL + Q+G++ D V ++ + + RG FV F +A A+
Sbjct: 23 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA-A 81
Query: 71 QGFPFYDKPMRIQYSKTDSD 90
+ + + + + +
Sbjct: 82 RPHSIDGRVVEPKRAVAREE 101
Score = 35.4 bits (81), Expect = 0.001
Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 6/73 (8%)
Query: 166 PEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHD-----IAFVEFENEMQ 220
E+ + LF+ L ET+E L + Q+ + ++ + FV F + +
Sbjct: 15 REKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAE 74
Query: 221 SAAAKLALHGFKI 233
AA +A I
Sbjct: 75 VDAA-MAARPHSI 86
>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1,
Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 75
Score = 36.4 bits (83), Expect = 3e-04
Identities = 12/73 (16%), Positives = 22/73 (30%), Gaps = 3/73 (4%)
Query: 174 LFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEMQSAAAKLALHGFKI 233
+ + LP + + + L + + V AFV N Q+ AA H
Sbjct: 1 ILIRGLPGDVTNQEVHDLLSDYELKY--CFVDKYKGTAFVTLLNGEQAEAAINTFHQ-SR 57
Query: 234 TPTHAMKISFAKK 246
+ +
Sbjct: 58 LRERELSVQLQPT 70
Score = 34.5 bits (78), Expect = 0.001
Identities = 11/76 (14%), Positives = 27/76 (35%), Gaps = 4/76 (5%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGF 73
+ + + + ++ + S + K +G AFV A A+ +
Sbjct: 1 ILIRGLPGDVTNQEVHDLLSDYELKYCF----VDKYKGTAFVTLLNGEQAEAAINTFHQS 56
Query: 74 PFYDKPMRIQYSKTDS 89
++ + +Q TD+
Sbjct: 57 RLRERELSVQLQPTDA 72
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 36.1 bits (83), Expect = 3e-04
Identities = 10/65 (15%), Positives = 22/65 (33%), Gaps = 6/65 (9%)
Query: 174 LFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLAL 228
+F+ L +T E + F F + + L + F+ F+ E + +
Sbjct: 2 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEE-EPVKKIMEK 60
Query: 229 HGFKI 233
+
Sbjct: 61 KYHNV 65
Score = 31.9 bits (72), Expect = 0.011
Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 4/73 (5%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVAL---KTLKMRGQAFVIFKEIASATNALRSM 70
++V +S ++ + F FG++ I KT K RG F+ FKE +
Sbjct: 2 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-K 60
Query: 71 QGFPFYDKPMRIQ 83
+ I+
Sbjct: 61 KYHNVGLSKCEIK 73
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 35.5 bits (81), Expect = 7e-04
Identities = 12/65 (18%), Positives = 26/65 (40%), Gaps = 6/65 (9%)
Query: 174 LFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLAL 228
+F+ + E+T E L F Q+ + + ++ +R AFV F++ +
Sbjct: 5 IFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI-VIQ 63
Query: 229 HGFKI 233
+
Sbjct: 64 KYHTV 68
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 34.4 bits (78), Expect = 0.002
Identities = 11/65 (16%), Positives = 25/65 (38%), Gaps = 5/65 (7%)
Query: 174 LFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDI-----AFVEFENEMQSAAAKLAL 228
L++ L T++ L L + + + ++ FV+F++ + A AL
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTAL 60
Query: 229 HGFKI 233
+
Sbjct: 61 KASGV 65
Score = 30.1 bits (67), Expect = 0.041
Identities = 13/71 (18%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVALK---TLKMRGQAFVIFKEIASATNALRSM 70
+Y+ + + L + +G+I+ A+ T K +G FV F ++A A+ ++
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTAL 60
Query: 71 QGFPFYDKPMR 81
+ + +
Sbjct: 61 KASGVQAQMAK 71
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 89
Score = 34.0 bits (77), Expect = 0.003
Identities = 13/84 (15%), Positives = 29/84 (34%), Gaps = 9/84 (10%)
Query: 8 ICVTNFVYVTHIS---STDLKKSLYAIFSQFGQIMDIVALK------TLKMRGQAFVIFK 58
+ N V+V +S + F +FG+I +V + A+V +
Sbjct: 5 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYI 64
Query: 59 EIASATNALRSMQGFPFYDKPMRI 82
A A++ + + ++
Sbjct: 65 RSEDALRAIQCVNNVVVDGRTLKA 88
>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2,
PTBP2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 33.3 bits (75), Expect = 0.005
Identities = 10/82 (12%), Positives = 29/82 (35%), Gaps = 2/82 (2%)
Query: 166 PEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDIAF-VEFENEMQSAAA 224
+ P+++L + LP E +E + L F + ++ ++ + E +
Sbjct: 3 MDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVN 62
Query: 225 KLALHGFKITPTHAMKISFAKK 246
+ + + I ++
Sbjct: 63 YYSAVTPHL-RNQPIYIQYSNH 83
Score = 31.4 bits (70), Expect = 0.021
Identities = 15/75 (20%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQ-- 71
+++ + + + A+ FG++ +I LK + QAF+ +A +
Sbjct: 11 LHIRKLPGEVTETEVIALGLPFGKVTNI---LMLKGKNQAFLELATEEAAITMVNYYSAV 67
Query: 72 GFPFYDKPMRIQYSK 86
++P+ IQYS
Sbjct: 68 TPHLRNQPIYIQYSN 82
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 34.2 bits (77), Expect = 0.008
Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 3/70 (4%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVAL---KTLKMRGQAFVIFKEIASATNALRSM 70
+++ +S +SL + F Q+G + D V + T + RG FV + + A+ +
Sbjct: 9 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 68
Query: 71 QGFPFYDKPM 80
Sbjct: 69 PHKVDGRVVE 78
Score = 32.7 bits (73), Expect = 0.026
Identities = 16/85 (18%), Positives = 32/85 (37%), Gaps = 7/85 (8%)
Query: 168 QPPNQI--LFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHD-----IAFVEFENEMQ 220
+ P Q+ LF+ L ET++ L F Q+ + ++ + + FV + +
Sbjct: 1 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 60
Query: 221 SAAAKLALHGFKITPTHAMKISFAK 245
AA A K + ++
Sbjct: 61 VDAAMNARPHKVDGRVVEPKRAVSR 85
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 32.8 bits (74), Expect = 0.009
Identities = 18/78 (23%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 174 LFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDI-----AFVEFENEMQSAAAKLAL 228
+F+ N+P E +E L +F++ RLV +R F E++++ + +A L
Sbjct: 11 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 70
Query: 229 HGFKITPTHAMKISFAKK 246
+G + A+++ A
Sbjct: 71 NGREF-SGRALRVDNAAS 87
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 98
Score = 32.5 bits (73), Expect = 0.010
Identities = 17/83 (20%), Positives = 29/83 (34%), Gaps = 10/83 (12%)
Query: 174 LFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR-----HDIAFVEFENEMQSAAAKLAL 228
+F+ NL ++ E L + QF K VR+V + AF +F + + A
Sbjct: 11 VFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAA 70
Query: 229 HGFKITPTH-----AMKISFAKK 246
+K+ A
Sbjct: 71 SLEAEGGGLKLDGRQLKVDLAVT 93
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 29.3 bits (65), Expect = 0.13
Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 5/63 (7%)
Query: 174 LFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNRHDI-----AFVEFENEMQSAAAKLAL 228
+F+ LP T++ L F F +E ++ +R FV + + A
Sbjct: 13 IFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDP 72
Query: 229 HGF 231
+
Sbjct: 73 NPI 75
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif,
single-stranded-interacting protein 1, RBMS1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 28.2 bits (62), Expect = 0.32
Identities = 8/75 (10%), Positives = 25/75 (33%), Gaps = 2/75 (2%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIF--KEIASATNALRSMQ 71
+Y++++ + ++ L + FGQ++ L+ + + +
Sbjct: 21 LYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFN 80
Query: 72 GFPFYDKPMRIQYSK 86
G P ++
Sbjct: 81 GKFIKTPPGVSAPTE 95
Score = 26.7 bits (58), Expect = 1.0
Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 5/71 (7%)
Query: 167 EQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR----HDIAFVEFENEMQSA 222
EQ P L+++NLP E L + F R++ + + F E+ +
Sbjct: 15 EQDPTN-LYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCE 73
Query: 223 AAKLALHGFKI 233
A +G I
Sbjct: 74 AVIGHFNGKFI 84
>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 28.4 bits (63), Expect = 0.33
Identities = 14/82 (17%), Positives = 24/82 (29%), Gaps = 17/82 (20%)
Query: 169 PPNQILFLTNL----------PEETSEMMLSMLFNQFPGFKEVRLVPNRHD-------IA 211
P ++L L N+ E + +++ K + +
Sbjct: 2 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKI 61
Query: 212 FVEFENEMQSAAAKLALHGFKI 233
FVEF + A L G K
Sbjct: 62 FVEFTSVFDCQKAMQGLTGRKF 83
>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 81
Score = 27.6 bits (61), Expect = 0.36
Identities = 14/67 (20%), Positives = 21/67 (31%), Gaps = 5/67 (7%)
Query: 14 VYVTHISSTDLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNALRSMQGF 73
V V L F+Q+G I+ + ++ A AL S G
Sbjct: 7 VTVFGFPQASASYILLQ-FAQYGNILKH---VMSNTGNWMHIRYQSKLQARKAL-SKDGR 61
Query: 74 PFYDKPM 80
F + M
Sbjct: 62 IFGESIM 68
>d1g9la_ a.144.1.1 (A:) poly(A) binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 144
Score = 28.4 bits (63), Expect = 0.53
Identities = 14/63 (22%), Positives = 21/63 (33%)
Query: 126 AAKEQARLMQAQQQQMQALSVQQPPVSQPAPPAPMATAGVPEQPPNQILFLTNLPEETSE 185
AA R + + + QQ +QP V Q P L + P + +
Sbjct: 8 AATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAPPQEQK 67
Query: 186 MML 188
ML
Sbjct: 68 QML 70
>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 99
Score = 27.1 bits (60), Expect = 0.74
Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 4/71 (5%)
Query: 51 GQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYSKTDSDVISKIKGTFMERPKKVRKQP 110
+ + I + A + L++M PF + RI+ + DS ++ K +E K
Sbjct: 13 DKEYEISRSAAMISPTLKAMIEGPFRESKGRIELKQFDSHILEKA----VEYLNYNLKYS 68
Query: 111 APVEDPAEAKK 121
ED E +
Sbjct: 69 GVSEDDDEIPE 79
>d1hhsa_ e.8.1.6 (A:) dsRNA phage RNA-dependent RNA-polymerase
{Bacteriophage PHI-6 [TaxId: 10879]}
Length = 664
Score = 27.3 bits (60), Expect = 2.3
Identities = 13/86 (15%), Positives = 28/86 (32%), Gaps = 17/86 (19%)
Query: 23 DLKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKEIASATNAL------RSMQGFPFY 76
K Y + +++ + G+++ ++E + L SM
Sbjct: 552 ASMKDTYGACPIYSDVLEAIERCWWNAFGESYRAYREDMLKRDTLELSRYVASMARQAGL 611
Query: 77 -----------DKPMRIQYSKTDSDV 91
P ++QY T++DV
Sbjct: 612 AELTPIDLEVLADPNKLQYKWTEADV 637
>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR,
middle domain {Mycobacterium tuberculosis [TaxId: 1773]}
Length = 179
Score = 26.4 bits (57), Expect = 2.9
Identities = 7/34 (20%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 138 QQQMQALSVQQPPVSQPAPPAPMA-TAGVPEQPP 170
+ + + QQP ++ + A T V +Q
Sbjct: 144 RALNERILRQQPLDAKKSAKTTAAGTVTVLDQRT 177
>d1qgia_ d.2.1.7 (A:) Endochitosanase {Bacillus circulans [TaxId:
1397]}
Length = 259
Score = 25.6 bits (56), Expect = 5.5
Identities = 9/38 (23%), Positives = 14/38 (36%), Gaps = 3/38 (7%)
Query: 150 PVSQPAPP---APMATAGVPEQPPNQILFLTNLPEETS 184
P +P G+ + N I+ L N PE+
Sbjct: 3 PDDNFSPETLQFLRNNTGLDGEQWNNIMKLINKPEQDD 40
>d1sf8a_ d.271.1.1 (A:) Chaperone protein HtpG {Escherichia coli
[TaxId: 562]}
Length = 115
Score = 24.9 bits (54), Expect = 5.6
Identities = 13/55 (23%), Positives = 23/55 (41%)
Query: 92 ISKIKGTFMERPKKVRKQPAPVEDPAEAKKSKKKAAKEQARLMQAQQQQMQALSV 146
I ++K ER K VR + PA + + + A+L A Q++ +
Sbjct: 3 IDRVKALLGERVKDVRLTHRLTDTPAIVSTDADEMSTQMAKLFAAAGQKVPEVKY 57
>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 91
Score = 24.5 bits (52), Expect = 6.9
Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 6/85 (7%)
Query: 166 PEQPPNQILFLTNLPEETSEMMLSMLFNQFPGFKEVRLVPNR----HDIAFVEFENEMQS 221
E LF+ NL S L + ++ ++ +V R +V+FE+
Sbjct: 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDL 67
Query: 222 AAAKLALHGFKITPTHAMKISFAKK 246
A L L G K+ + +K+ K
Sbjct: 68 EKA-LELTGLKVF-GNEIKLEKPKG 90
>d1f3ub_ b.65.1.1 (B:) TFIIF alpha subunit, Rap74 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 149
Score = 24.4 bits (53), Expect = 9.7
Identities = 7/59 (11%), Positives = 21/59 (35%), Gaps = 5/59 (8%)
Query: 92 ISKIKGTFMERPKKVRKQPAPVEDP-----AEAKKSKKKAAKEQARLMQAQQQQMQALS 145
+ +ER +K E P +E + ++ A+ + + ++ + +
Sbjct: 35 FATWNQARLERDLSNKKIYQEEEMPESGAGSEFNRKLREEARRKKYGIVLKEFRPEDQP 93
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.130 0.365
Gapped
Lambda K H
0.267 0.0553 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 837,802
Number of extensions: 37115
Number of successful extensions: 304
Number of sequences better than 10.0: 1
Number of HSP's gapped: 248
Number of HSP's successfully gapped: 139
Length of query: 246
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 163
Effective length of database: 1,268,006
Effective search space: 206684978
Effective search space used: 206684978
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.2 bits)