Query psy4061
Match_columns 119
No_of_seqs 122 out of 1043
Neff 6.1
Searched_HMMs 46136
Date Sat Aug 17 00:20:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4061.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4061hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06966 DUF1295: Protein of u 99.9 1.1E-22 2.4E-27 157.4 8.8 73 1-73 163-235 (235)
2 COG3752 Steroid 5-alpha reduct 99.8 8.1E-21 1.8E-25 148.6 7.6 78 1-84 192-270 (272)
3 KOG4650|consensus 99.7 5.6E-17 1.2E-21 127.4 7.5 79 1-85 223-302 (311)
4 COG2020 STE14 Putative protein 99.6 2E-15 4.4E-20 113.4 8.9 72 1-81 115-186 (187)
5 PF01222 ERG4_ERG24: Ergostero 99.5 2.3E-14 5E-19 119.8 7.3 72 1-80 359-431 (432)
6 KOG1435|consensus 99.3 1.6E-12 3.6E-17 108.0 6.0 72 1-80 355-427 (428)
7 KOG2628|consensus 99.3 5.6E-12 1.2E-16 95.7 8.3 72 1-81 130-201 (201)
8 PF04191 PEMT: Phospholipid me 99.2 7.1E-11 1.5E-15 79.9 6.1 57 1-66 50-106 (106)
9 PF04140 ICMT: Isoprenylcystei 98.7 8.3E-08 1.8E-12 65.1 6.8 51 1-58 43-94 (94)
10 PLN02392 probable steroid redu 98.5 2.9E-07 6.3E-12 73.0 5.5 67 1-80 193-259 (260)
11 KOG1638|consensus 98.3 1.5E-06 3.3E-11 68.3 5.1 66 1-80 191-256 (257)
12 PF02544 Steroid_dh: 3-oxo-5-a 98.2 3E-06 6.4E-11 61.6 5.8 66 1-80 84-149 (150)
13 PLN02560 enoyl-CoA reductase 98.0 1.2E-05 2.5E-10 65.1 5.3 71 1-79 237-307 (308)
14 PLN03164 3-oxo-5-alpha-steroid 97.7 7.8E-05 1.7E-09 60.8 5.7 68 1-80 255-322 (323)
15 COG1755 Uncharacterized protei 97.1 0.0018 4E-08 48.5 6.5 50 1-59 116-168 (172)
16 PF07298 NnrU: NnrU protein; 97.0 0.0013 2.9E-08 49.9 4.7 63 1-75 99-161 (191)
17 COG4094 Predicted membrane pro 94.9 0.017 3.7E-07 44.7 2.1 81 2-93 107-191 (219)
18 KOG1640|consensus 94.7 0.056 1.2E-06 43.8 4.5 66 1-80 238-303 (304)
19 KOG1639|consensus 93.9 0.088 1.9E-06 42.2 4.1 21 2-22 233-253 (297)
20 PF05975 EcsB: Bacterial ABC t 78.8 9.1 0.0002 31.5 6.8 76 2-94 276-354 (386)
21 PLN02797 phosphatidyl-N-dimeth 68.0 4.7 0.0001 30.1 2.3 21 1-21 112-132 (164)
22 PRK10527 hypothetical protein; 64.5 22 0.00048 25.3 5.2 29 42-72 36-66 (125)
23 TIGR00026 hi_GC_TIGR00026 deaz 45.5 15 0.00033 25.4 1.8 21 57-80 90-110 (113)
24 PF11241 DUF3043: Protein of u 39.1 1.7E+02 0.0036 22.0 7.0 19 7-25 76-94 (170)
25 KOG4142|consensus 36.5 82 0.0018 24.0 4.5 22 2-23 146-167 (208)
26 KOG0498|consensus 36.3 1.2E+02 0.0026 27.8 6.3 19 4-22 315-333 (727)
27 COG4059 MtrE Tetrahydromethano 34.6 38 0.00083 27.1 2.6 31 29-61 262-292 (304)
28 PF04075 DUF385: Domain of unk 32.7 40 0.00086 23.9 2.2 20 57-79 108-127 (132)
29 PRK00972 tetrahydromethanopter 32.6 84 0.0018 25.5 4.2 30 30-61 260-289 (292)
30 PF09451 ATG27: Autophagy-rela 32.1 24 0.00052 27.8 1.1 29 66-95 226-254 (268)
31 PF09124 Endonuc-dimeris: T4 r 31.9 41 0.00088 20.7 1.9 13 4-16 2-14 (54)
32 PF09187 DUF1950: Domain of un 31.0 39 0.00085 23.9 1.9 49 64-114 6-71 (119)
33 PF15320 RAM: mRNA cap methyla 30.4 50 0.0011 21.8 2.3 21 53-73 4-25 (81)
34 PHA02677 hypothetical protein; 29.8 1.2E+02 0.0026 21.2 4.1 33 42-77 12-44 (108)
35 COG2832 Uncharacterized protei 25.3 2.3E+02 0.005 20.1 5.0 30 41-72 35-66 (119)
36 PF00499 Oxidored_q3: NADH-ubi 23.9 2.3E+02 0.0049 19.0 4.8 30 2-31 10-39 (144)
37 PRK12585 putative monovalent c 23.0 2.2E+02 0.0049 21.9 4.9 18 67-85 91-108 (197)
38 PF10028 DUF2270: Predicted in 21.9 3.7E+02 0.008 20.5 6.2 39 58-99 63-106 (185)
39 TIGR01113 mtrE N5-methyltetrah 20.6 4.4E+02 0.0095 21.4 6.2 12 50-61 270-281 (283)
No 1
>PF06966 DUF1295: Protein of unknown function (DUF1295); InterPro: IPR010721 This family contains a number of bacterial and eukaryotic proteins of unknown function that are approximately 300 residues long.
Probab=99.88 E-value=1.1e-22 Score=157.43 Aligned_cols=73 Identities=47% Similarity=1.021 Sum_probs=67.3
Q ss_pred CccchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhcCCCHHHHHHHhhc
Q psy4061 1 MSRHPNYFGEIVLWWGMFIISLNVIRGAEFVCVLSPIFITLIILFLSGIPLLERSSDHKYRDNAKYQYYKKST 73 (119)
Q Consensus 1 ysRHPnY~Ge~l~~~g~~l~~~~~~~~~~w~~~i~pl~~~~ll~~~~~i~~~E~~~~~kyG~~~~Y~~Y~~~t 73 (119)
|||||||+||+++|+|+++++.+...+..++++++|+++++++++.+|+++.|+++.+|||++|+|++||++|
T Consensus 163 ~sRHPNYfGE~l~W~g~~~~a~~~~~~~~~~~~~~pl~~~~~l~~~sgip~~E~~~~~kyg~~~~Y~~Y~~~t 235 (235)
T PF06966_consen 163 YSRHPNYFGEILFWWGIYLAAISSGSGWLWWAIIGPLFMTLLLLFVSGIPLLEKRMAKKYGDRPAYQEYQRRT 235 (235)
T ss_pred eeeCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHhcCCCHhHHHHHhcC
Confidence 6999999999999999999998875555578899999999999999999999999999999999999999997
No 2
>COG3752 Steroid 5-alpha reductase family enzyme [General function prediction only]
Probab=99.83 E-value=8.1e-21 Score=148.57 Aligned_cols=78 Identities=33% Similarity=0.788 Sum_probs=66.6
Q ss_pred CccchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHH-hhcCCCHHHHHHHhhcCCcccc
Q psy4061 1 MSRHPNYFGEIVLWWGMFIISLNVIRGAEFVCVLSPIFITLIILFLSGIPLLERSSD-HKYRDNAKYQYYKKSTSPLIPI 79 (119)
Q Consensus 1 ysRHPnY~Ge~l~~~g~~l~~~~~~~~~~w~~~i~pl~~~~ll~~~~~i~~~E~~~~-~kyG~~~~Y~~Y~~~t~~~IP~ 79 (119)
||||||||||.+.|+|+++.+.+. +...|++.+|++|+.++.+++|+|..||+|. +| |+|++||+||++|+|+
T Consensus 192 ~tRHPNYFgE~l~Wwg~~Lia~~~--~~~~W~~~sPllmt~LL~~vSGvp~l~ekm~k~r----~~fr~Yq~rt~~F~P~ 265 (272)
T COG3752 192 WTRHPNYFGEALVWWGFYLIAISE--WLLLWAVASPLLMTWLLVHVSGVPPLEEKMLKSR----PGFREYQRRTNAFFPR 265 (272)
T ss_pred cccCcchHHHHHHHHHHHHHHHhh--hhHhhhcccHHHHHHHHHHhcCCChHHHHHhccc----HhHHHHHHHhcccCCC
Confidence 699999999999999999999854 3334556899999999999999996665554 45 8999999999999999
Q ss_pred CCCCC
Q psy4061 80 PPSVY 84 (119)
Q Consensus 80 ~~~~~ 84 (119)
++++.
T Consensus 266 ~~k~~ 270 (272)
T COG3752 266 PPKKA 270 (272)
T ss_pred CCccc
Confidence 98864
No 3
>KOG4650|consensus
Probab=99.69 E-value=5.6e-17 Score=127.44 Aligned_cols=79 Identities=42% Similarity=0.888 Sum_probs=64.6
Q ss_pred CccchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhcCCCHHHHHHHhhcCCccc-c
Q psy4061 1 MSRHPNYFGEIVLWWGMFIISLNVIRGAEFVCVLSPIFITLIILFLSGIPLLERSSDHKYRDNAKYQYYKKSTSPLIP-I 79 (119)
Q Consensus 1 ysRHPnY~Ge~l~~~g~~l~~~~~~~~~~w~~~i~pl~~~~ll~~~~~i~~~E~~~~~kyG~~~~Y~~Y~~~t~~~IP-~ 79 (119)
|||||||+||+++|+|+++++.....|..|..+.+++++++++.+. ...|+.+.+|| ++|+.||++|++||| +
T Consensus 223 ySRHPNylgEqL~Wwglyvfa~~~~egl~wtvi~~lv~~~~l~~~t---~lie~~~v~~~---~aYR~Yqktts~~ip~~ 296 (311)
T KOG4650|consen 223 YSRHPNYLGEQLLWWGLYVFAAPVLEGLEWTVIAGLVFLTLLLLFT---SLIELLEVEKY---PAYRVYQKTTSRFIPRL 296 (311)
T ss_pred eccCccHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHH---hhhhhhhhhhh---HHHHHHHhccccccccc
Confidence 7999999999999999999998887776677777777776666554 56778888887 699999999999999 4
Q ss_pred CCCCCc
Q psy4061 80 PPSVYV 85 (119)
Q Consensus 80 ~~~~~~ 85 (119)
+++-+.
T Consensus 297 f~sh~d 302 (311)
T KOG4650|consen 297 FPSHWD 302 (311)
T ss_pred chhhHh
Confidence 444333
No 4
>COG2020 STE14 Putative protein-S-isoprenylcysteine methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=2e-15 Score=113.44 Aligned_cols=72 Identities=26% Similarity=0.408 Sum_probs=54.7
Q ss_pred CccchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhcCCCHHHHHHHhhcCCccccC
Q psy4061 1 MSRHPNYFGEIVLWWGMFIISLNVIRGAEFVCVLSPIFITLIILFLSGIPLLERSSDHKYRDNAKYQYYKKSTSPLIPIP 80 (119)
Q Consensus 1 ysRHPnY~Ge~l~~~g~~l~~~~~~~~~~w~~~i~pl~~~~ll~~~~~i~~~E~~~~~kyG~~~~Y~~Y~~~t~~~IP~~ 80 (119)
++|||+|+|.+++.+|..++..+ ++.+++.+.+.+. .+..++..||+.+.++|| ++|++|+++|+++||+.
T Consensus 115 ~VRHP~Y~~~~l~~~g~~~~~~~------~~~l~~~~~~~~~-~~~~~i~~EEr~L~~~fg--~~Y~~Y~~rV~r~iP~~ 185 (187)
T COG2020 115 IVRHPIYLGLLLFALGTGLLLGS------LWALLIFVVLVAL-LFLFRIREEERYLRAEFG--DEYREYRKRVPRLIPPL 185 (187)
T ss_pred eecCcHHHHHHHHHHHHHHHHHh------HHHHHHHHHHHHH-HHHHHhhHHHHHHHHHhh--HHHHHHHHhCCccCCCC
Confidence 57999999999999999987664 3333322222222 223457899999999999 79999999999999986
Q ss_pred C
Q psy4061 81 P 81 (119)
Q Consensus 81 ~ 81 (119)
.
T Consensus 186 ~ 186 (187)
T COG2020 186 V 186 (187)
T ss_pred C
Confidence 3
No 5
>PF01222 ERG4_ERG24: Ergosterol biosynthesis ERG4/ERG24 family; InterPro: IPR001171 The two fungal enzymes, C-14 sterol reductase (gene ERG24 in budding yeast and erg3 in Neurospora crassa) and C-24(28) sterol reductase (gene ERG4 in budding yeast and sts1 in fission yeast), are involved in ergosterol biosynthesis. They act by reducing double bonds in precursors of ergosterol []. These proteins are highly hydrophobic and seem to contain seven or eight transmembrane regions. Chicken lamin B receptor that is thought to anchor the lamina to the inner nuclear membrane belongs to this family.; GO: 0016020 membrane
Probab=99.52 E-value=2.3e-14 Score=119.81 Aligned_cols=72 Identities=25% Similarity=0.437 Sum_probs=57.5
Q ss_pred CccchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhcCCCHHHHHHHhhcC-Ccccc
Q psy4061 1 MSRHPNYFGEIVLWWGMFIISLNVIRGAEFVCVLSPIFITLIILFLSGIPLLERSSDHKYRDNAKYQYYKKSTS-PLIPI 79 (119)
Q Consensus 1 ysRHPnY~Ge~l~~~g~~l~~~~~~~~~~w~~~i~pl~~~~ll~~~~~i~~~E~~~~~kyG~~~~Y~~Y~~~t~-~~IP~ 79 (119)
++|||||+||+++.+++++.++.. ...-...+++++.++. .|..++|+++.+||| ++|++||++|| ++||+
T Consensus 359 ~~Rh~NY~gdil~a~aw~l~~gf~----~~~pyfy~~~~~~lL~--hR~~RD~~rC~~KYG--~~W~~Yc~~Vpy~~iP~ 430 (432)
T PF01222_consen 359 IARHPNYLGDILMALAWCLPCGFS----SILPYFYPIFFTILLI--HRARRDEERCRKKYG--KDWDEYCKRVPYRIIPG 430 (432)
T ss_pred hhcccchHHHHHHHHHHHHHHhcC----ccHHHHHHHHHHHHHh--hhHHHHHHHHHHhhC--HHHHHHHHhCCEEEeCC
Confidence 489999999999999999998753 1222344555555443 457999999999999 89999999999 89997
Q ss_pred C
Q psy4061 80 P 80 (119)
Q Consensus 80 ~ 80 (119)
+
T Consensus 431 i 431 (432)
T PF01222_consen 431 I 431 (432)
T ss_pred c
Confidence 5
No 6
>KOG1435|consensus
Probab=99.33 E-value=1.6e-12 Score=108.02 Aligned_cols=72 Identities=21% Similarity=0.416 Sum_probs=56.7
Q ss_pred CccchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhcCCCHHHHHHHhhcC-Ccccc
Q psy4061 1 MSRHPNYFGEIVLWWGMFIISLNVIRGAEFVCVLSPIFITLIILFLSGIPLLERSSDHKYRDNAKYQYYKKSTS-PLIPI 79 (119)
Q Consensus 1 ysRHPnY~Ge~l~~~g~~l~~~~~~~~~~w~~~i~pl~~~~ll~~~~~i~~~E~~~~~kyG~~~~Y~~Y~~~t~-~~IP~ 79 (119)
++|||||+||++..+++++.++.. + .+..+-++++++++.. |..++|.+++.||| ++|++|+++|| ++||+
T Consensus 355 ~aRh~nY~gD~i~alawslp~gf~---s-~lpyfy~iyf~~LLvh--R~~RDe~rC~~KYG--~~W~~Yc~~VpyriiP~ 426 (428)
T KOG1435|consen 355 VARHPNYLGDLIMALAWSLPCGFN---S-PLPYFYPIYFTLLLVH--RAARDEHRCRSKYG--EDWEEYCRKVPYRILPY 426 (428)
T ss_pred hhcCcCcHHHHHHHHHHHHhccCC---C-CcchHHHHHHHHHHHH--HHhhhHHHHHHHHh--hhHHHHHhhCCcccCCC
Confidence 589999999999999999998653 1 2223335555555544 46899999999999 89999999998 89997
Q ss_pred C
Q psy4061 80 P 80 (119)
Q Consensus 80 ~ 80 (119)
+
T Consensus 427 V 427 (428)
T KOG1435|consen 427 V 427 (428)
T ss_pred C
Confidence 5
No 7
>KOG2628|consensus
Probab=99.33 E-value=5.6e-12 Score=95.74 Aligned_cols=72 Identities=21% Similarity=0.282 Sum_probs=57.1
Q ss_pred CccchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhcCCCHHHHHHHhhcCCccccC
Q psy4061 1 MSRHPNYFGEIVLWWGMFIISLNVIRGAEFVCVLSPIFITLIILFLSGIPLLERSSDHKYRDNAKYQYYKKSTSPLIPIP 80 (119)
Q Consensus 1 ysRHPnY~Ge~l~~~g~~l~~~~~~~~~~w~~~i~pl~~~~ll~~~~~i~~~E~~~~~kyG~~~~Y~~Y~~~t~~~IP~~ 80 (119)
|+|||.|+|.+++++|..++.++. ++++..++++ .-.+..+|+.||+.+.+-|| ++|.||+++|+.=||+.
T Consensus 130 y~RHPsY~g~flw~~gtq~~L~np------is~v~f~~V~-w~ff~~Ri~~EE~~Li~fFg--~~Y~eY~kkV~sGiPfi 200 (201)
T KOG2628|consen 130 YVRHPSYVGFFLWAAGTQTMLCNP------ISLVAFLLVV-WRFFADRIKEEEKYLISFFG--SSYVEYAKKVPSGIPFI 200 (201)
T ss_pred heeCchHHHHHHHHHHHHHHHhCH------HHHHHHHHHH-HHHHhhhhhHHHHHHHHHhh--HHHHHHHHhCCcCCCCC
Confidence 689999999999999999987753 3334333322 23345689999999999999 89999999999889986
Q ss_pred C
Q psy4061 81 P 81 (119)
Q Consensus 81 ~ 81 (119)
+
T Consensus 201 ~ 201 (201)
T KOG2628|consen 201 K 201 (201)
T ss_pred C
Confidence 4
No 8
>PF04191 PEMT: Phospholipid methyltransferase ; InterPro: IPR007318 The Saccharomyces cerevisiae (Baker's yeast) phospholipid methyltransferase (2.1.1.16 from EC) has a broad substrate specificity of unsaturated phospholipids [].; GO: 0008170 N-methyltransferase activity, 0006644 phospholipid metabolic process
Probab=99.17 E-value=7.1e-11 Score=79.93 Aligned_cols=57 Identities=21% Similarity=0.411 Sum_probs=38.3
Q ss_pred CccchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhcCCCHHH
Q psy4061 1 MSRHPNYFGEIVLWWGMFIISLNVIRGAEFVCVLSPIFITLIILFLSGIPLLERSSDHKYRDNAKY 66 (119)
Q Consensus 1 ysRHPnY~Ge~l~~~g~~l~~~~~~~~~~w~~~i~pl~~~~ll~~~~~i~~~E~~~~~kyG~~~~Y 66 (119)
+||||+|+|.+++++|++++..+. +..++..+. .. +.+...+..||+.+.++|| ++|
T Consensus 50 ~vRhPmY~g~~l~~~G~~l~~~s~-----~~l~~~~~~-~~-~~~~~~~~~EE~~L~~~fG--~~Y 106 (106)
T PF04191_consen 50 YVRHPMYLGFLLILLGIALMLGSW-----LGLLLAVLA-FL-LYYIFIIRFEERFLERRFG--EEY 106 (106)
T ss_pred CcCChHHHHHHHHHHHHHHHhCcH-----HHHHHHHHH-HH-HHHHHHHHhHHHHHHHHhC--cCC
Confidence 689999999999999999987642 222222222 22 2223324588889999999 455
No 9
>PF04140 ICMT: Isoprenylcysteine carboxyl methyltransferase (ICMT) family ; InterPro: IPR007269 The isoprenylcysteine o-methyltransferase (2.1.1.100 from EC) carries out carboyxl methylation of cleaved eukaryotic proteins that terminate in a CaaX motif. In Saccharomyces cerevisiae (Baker's yeast) this methylation is carried out by Ste14p, an integral endoplasmic reticulum membrane protein. Ste14p is the founding member of the isoprenylcysteine carboxyl methyltransferase (ICMT) family, whose members share significant sequence homology [].; GO: 0004671 protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity, 0006481 C-terminal protein methylation, 0016021 integral to membrane; PDB: 4A2N_B.
Probab=98.68 E-value=8.3e-08 Score=65.11 Aligned_cols=51 Identities=22% Similarity=0.358 Sum_probs=29.3
Q ss_pred CccchhHHHHHHHHHHHHHHHHhhhhhhHHHH-HHHHHHHHHHHHHHhcchHHHHHHHh
Q psy4061 1 MSRHPNYFGEIVLWWGMFIISLNVIRGAEFVC-VLSPIFITLIILFLSGIPLLERSSDH 58 (119)
Q Consensus 1 ysRHPnY~Ge~l~~~g~~l~~~~~~~~~~w~~-~i~pl~~~~ll~~~~~i~~~E~~~~~ 58 (119)
++|||||+|.++..+|..+...+. |.. ++..++ .... +..+|+.||+.+.+
T Consensus 43 ~vRHP~Y~g~~~~~~~~~~ll~~~-----~~~~~~~~~~-~~~~-l~~RI~~EE~~L~~ 94 (94)
T PF04140_consen 43 YVRHPSYLGNIIWELGGQLLLFNA-----WLTALILFAL-VAWL-LFVRIREEERALIE 94 (94)
T ss_dssp TBSSHHHHH-HHHHHHHHHHHHT------HHHHHHHHHH-HHHH-HHHHHHHHHHHHHH
T ss_pred cccCchHHHHHHHHHHHHHHHHhH-----HHHHHHHHHH-HHHH-HHHHHHHHHHHhcC
Confidence 689999999887777776665542 322 222121 1222 22567888887653
No 10
>PLN02392 probable steroid reductase DET2
Probab=98.46 E-value=2.9e-07 Score=72.98 Aligned_cols=67 Identities=24% Similarity=0.394 Sum_probs=43.5
Q ss_pred CccchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhcCCCHHHHHHHhhcCCccccC
Q psy4061 1 MSRHPNYFGEIVLWWGMFIISLNVIRGAEFVCVLSPIFITLIILFLSGIPLLERSSDHKYRDNAKYQYYKKSTSPLIPIP 80 (119)
Q Consensus 1 ysRHPnY~Ge~l~~~g~~l~~~~~~~~~~w~~~i~pl~~~~ll~~~~~i~~~E~~~~~kyG~~~~Y~~Y~~~t~~~IP~~ 80 (119)
++.+|||+||++.|+|+++++.+ +.+++..+. +. .....++....+...+||| ++|.++.+++||++
T Consensus 193 ~VscPnYf~EileW~gfal~t~s------~~~~~F~~~-~~-~nl~~rA~~~hkwY~~kFg-----~~ypk~RkaiIPfi 259 (260)
T PLN02392 193 LVSCPNYFGEIVEWLGWAVMTWS------WAGFGFFLY-TC-SNLVPRACANHKWYLEKFG-----EDYPKGRKAVIPFL 259 (260)
T ss_pred eEcCCcHHHHHHHHHHHHHHHHH------HHHHHHHHH-HH-HHHHHHHHHHHHHHHHHcc-----ccccCCCeEecCcc
Confidence 57799999999999999998753 221111111 11 1112224556666788998 35777888999986
No 11
>KOG1638|consensus
Probab=98.26 E-value=1.5e-06 Score=68.33 Aligned_cols=66 Identities=27% Similarity=0.431 Sum_probs=41.6
Q ss_pred CccchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhcCCCHHHHHHHhhcCCccccC
Q psy4061 1 MSRHPNYFGEIVLWWGMFIISLNVIRGAEFVCVLSPIFITLIILFLSGIPLLERSSDHKYRDNAKYQYYKKSTSPLIPIP 80 (119)
Q Consensus 1 ysRHPnY~Ge~l~~~g~~l~~~~~~~~~~w~~~i~pl~~~~ll~~~~~i~~~E~~~~~kyG~~~~Y~~Y~~~t~~~IP~~ 80 (119)
|+-.|||+||++.|+|+++++.+ +.++...++ +.+. ..-+..-..+-.++|| ++|.+..+.+||++
T Consensus 191 yVsCPNYfgEiieW~Gyal~~ws------~p~~aFa~f-t~~~-l~pRA~ahH~WY~~kF------e~YPk~RkAlIPfv 256 (257)
T KOG1638|consen 191 YVSCPNYFGEIIEWIGYALASWS------LPALAFAFF-TICN-LGPRAYAHHKWYLKKF------EDYPKNRKALIPFV 256 (257)
T ss_pred EeecchHHHHHHHHHHHHHHhhh------HHHHHHHHH-HHHH-hhHHHHHHHHHHHHhh------ccCCccceeecccc
Confidence 46789999999999999998754 222222222 2211 1111223334446676 78899999999985
No 12
>PF02544 Steroid_dh: 3-oxo-5-alpha-steroid 4-dehydrogenase ; InterPro: IPR001104 Synonym(s): Steroid 5-alpha-reductase 3-oxo-5-alpha-steroid 4-dehydrogenases, 1.3.99.5 from EC catalyse the conversion of 3-oxo-5-alpha-steroid + acceptor to 3-oxo-delta(4)-steroid + reduced acceptor. The steroid 5-alpha-reductase enzyme is responsible for the formation of dihydrotestosterone, this hormone promotes the differentiation of male external genitalia and the prostate during foetal development []. In humans mutations in this enzyme can cause a form of male pseudohermaphorditism in which the external genitalia and prostate fail to develop normally. A related steroid reductase enzyme, DET2, is found in plants such as Arabidopsis. Mutations in this enzyme cause defects in light-regulated development []. This domain is present in both type 1 and type 2 forms.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0006629 lipid metabolic process, 0005737 cytoplasm, 0016021 integral to membrane
Probab=98.23 E-value=3e-06 Score=61.61 Aligned_cols=66 Identities=23% Similarity=0.426 Sum_probs=39.9
Q ss_pred CccchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhcCCCHHHHHHHhhcCCccccC
Q psy4061 1 MSRHPNYFGEIVLWWGMFIISLNVIRGAEFVCVLSPIFITLIILFLSGIPLLERSSDHKYRDNAKYQYYKKSTSPLIPIP 80 (119)
Q Consensus 1 ysRHPnY~Ge~l~~~g~~l~~~~~~~~~~w~~~i~pl~~~~ll~~~~~i~~~E~~~~~kyG~~~~Y~~Y~~~t~~~IP~~ 80 (119)
++..|||+||++.|+|+++++.+. ...+..+++ +.....++....+..++|| ++|.++.+++||++
T Consensus 84 ~vscP~Y~~Eil~w~~f~l~~~~~------~~~~f~~~~--~~~l~~~A~~~h~wY~~~F------~~yp~~R~~lIPfi 149 (150)
T PF02544_consen 84 YVSCPHYFFEILIWIGFALLTGSW------PSYAFALFV--VVNLSPRAVQTHRWYKKKF------KEYPKNRKALIPFI 149 (150)
T ss_pred eeeehhhHHHHHHHHHHHHHHhhh------hhHHHHHHH--HHHHHHHHHHHHHHHHHHC------ccccCCCeEecCcc
Confidence 467899999999999999987532 111111111 1111111233444445555 67888889999986
No 13
>PLN02560 enoyl-CoA reductase
Probab=97.98 E-value=1.2e-05 Score=65.12 Aligned_cols=71 Identities=20% Similarity=0.219 Sum_probs=41.7
Q ss_pred CccchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhcCCCHHHHHHHhhcCCcccc
Q psy4061 1 MSRHPNYFGEIVLWWGMFIISLNVIRGAEFVCVLSPIFITLIILFLSGIPLLERSSDHKYRDNAKYQYYKKSTSPLIPI 79 (119)
Q Consensus 1 ysRHPnY~Ge~l~~~g~~l~~~~~~~~~~w~~~i~pl~~~~ll~~~~~i~~~E~~~~~kyG~~~~Y~~Y~~~t~~~IP~ 79 (119)
++-.|||++|++.|+|+++++.+. .+++. +++.... ....+.-.++...++|++.++..+|.++..+++|+
T Consensus 237 ~VscPnY~~Ei~~W~gf~~~t~~~------~~~~F-~~~~~~~-m~~wA~~kh~~Y~k~F~d~~~~~~yp~~~~~~pp~ 307 (308)
T PLN02560 237 YVTCANYTTEIYQWLGFNIATQTV------AGYLF-LAVAAAI-MTNWALAKHRRLKKLFDGKDGRPKYPRRWVILPPF 307 (308)
T ss_pred eecCCcHHHHHHHHHHHHHHHccH------HHHHH-HHHHHHH-HHHHHHHHHHHHHHhccCccccccCCCceEeCCCc
Confidence 356899999999999999997532 11111 1111111 11223456777788887422334577766666665
No 14
>PLN03164 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal domain containing protein; Provisional
Probab=97.70 E-value=7.8e-05 Score=60.83 Aligned_cols=68 Identities=22% Similarity=0.349 Sum_probs=40.1
Q ss_pred CccchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhcCCCHHHHHHHhhcCCccccC
Q psy4061 1 MSRHPNYFGEIVLWWGMFIISLNVIRGAEFVCVLSPIFITLIILFLSGIPLLERSSDHKYRDNAKYQYYKKSTSPLIPIP 80 (119)
Q Consensus 1 ysRHPnY~Ge~l~~~g~~l~~~~~~~~~~w~~~i~pl~~~~ll~~~~~i~~~E~~~~~kyG~~~~Y~~Y~~~t~~~IP~~ 80 (119)
++-.|||++|+++|+|+++++.+. ...+++.+ +++.. ....++....+...+|| ++|.++.+.+||++
T Consensus 255 ~VSCPHYf~EIliw~gfal~t~~~--~~~~~l~~--~~v~~--nL~~~A~~tHkWY~kkF------~dYPk~RkAIIPfI 322 (323)
T PLN03164 255 MVSCPHYLAEIVIYAGLLIASGGT--DLTIWLLF--GFVVA--NLTFAAAETHRWYLQKF------ENYPRNRYAIIPFV 322 (323)
T ss_pred eEcCCcHHHHHHHHHHHHHHHcCc--hHHHHHHH--HHHHH--HHHHHHHHHHHHHHHhc------cccccCceEecCcc
Confidence 356899999999999999987421 11122211 11111 11111234455556676 34778888999986
No 15
>COG1755 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.13 E-value=0.0018 Score=48.45 Aligned_cols=50 Identities=26% Similarity=0.425 Sum_probs=30.9
Q ss_pred CccchhHHH-HHHHHHHHHHHHHhhhhhhHHHH--HHHHHHHHHHHHHHhcchHHHHHHHhh
Q psy4061 1 MSRHPNYFG-EIVLWWGMFIISLNVIRGAEFVC--VLSPIFITLIILFLSGIPLLERSSDHK 59 (119)
Q Consensus 1 ysRHPnY~G-e~l~~~g~~l~~~~~~~~~~w~~--~i~pl~~~~ll~~~~~i~~~E~~~~~k 59 (119)
+.|||||+- -+....|+.+.+- .|.+ +..|+ ..++++ .+|+-||+.+.+-
T Consensus 116 ~~kHPNYflnIipEligl~Ll~~------A~~Ta~l~~p~--ya~~L~-vRIr~EekaL~~~ 168 (172)
T COG1755 116 TMKHPNYFLNIIPELIGLPLLCQ------AWYTALLFSPI--YALLLY-VRIRQEEKALAEL 168 (172)
T ss_pred hccCCcHHHHHHHHHHHHHHHHH------HHHHHHHHHHH--HHHHHh-hhhhHHHHHHHHh
Confidence 579999999 6677788888864 2433 23333 333333 3467777776553
No 16
>PF07298 NnrU: NnrU protein; InterPro: IPR009915 This family consists of several plant and bacterial NnrU proteins. NnrU is thought to be involved in the reduction of nitric oxide. The exact function of NnrU is unclear. It is thought however that NnrU and perhaps NnrT are required for expression of both nirK and nor [].
Probab=96.98 E-value=0.0013 Score=49.88 Aligned_cols=63 Identities=21% Similarity=0.439 Sum_probs=35.6
Q ss_pred CccchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhcCCCHHHHHHHhhcCC
Q psy4061 1 MSRHPNYFGEIVLWWGMFIISLNVIRGAEFVCVLSPIFITLIILFLSGIPLLERSSDHKYRDNAKYQYYKKSTSP 75 (119)
Q Consensus 1 ysRHPnY~Ge~l~~~g~~l~~~~~~~~~~w~~~i~pl~~~~ll~~~~~i~~~E~~~~~kyG~~~~Y~~Y~~~t~~ 75 (119)
++|||++.|..+ | +.+-...|- ...-..+.+.+..+.+ .++..+|++ .+ +| ++|++|+++|+.
T Consensus 99 ~~RHP~l~g~~l-W-A~aHLl~nG--d~~~~lLFg~~~~~al----~~~~~~~rr-~~-~g--~~~~~~~~~~s~ 161 (191)
T PF07298_consen 99 ITRHPMLLGVLL-W-ALAHLLANG--DLASLLLFGGFLAWAL----IGIILIDRR-RR-FG--DAWRAYPRRTSI 161 (191)
T ss_pred HhcCchHHHHHH-H-HHHHhhhcC--cHHHHHHHHHHHHHHH----HHHHHHHHh-hc-cc--cccccccCCCCC
Confidence 479999999665 3 222221121 0111223443433322 235678888 66 88 689999998863
No 17
>COG4094 Predicted membrane protein [Function unknown]
Probab=94.92 E-value=0.017 Score=44.67 Aligned_cols=81 Identities=16% Similarity=0.289 Sum_probs=47.0
Q ss_pred ccchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhcCCCHHHHHHHhhcCCccccCC
Q psy4061 2 SRHPNYFGEIVLWWGMFIISLNVIRGAEFVCVLSPIFITLIILFLSGIPLLERSSDHKYRDNAKYQYYKKSTSPLIPIPP 81 (119)
Q Consensus 2 sRHPnY~Ge~l~~~g~~l~~~~~~~~~~w~~~i~pl~~~~ll~~~~~i~~~E~~~~~kyG~~~~Y~~Y~~~t~~~IP~~~ 81 (119)
+|||+-+|..++.+|=-+.-+.. .... +.+... +....++...|++.++||| +++..=+++|++ +|+.-
T Consensus 107 tRHP~l~g~~iWalaHll~nGd~---~Svl-lfggf~----l~~~~~~~~~~rR~r~r~g--~a~~~~~~~ts~-~pfaA 175 (219)
T COG4094 107 TRHPQLLGVVIWALAHLLANGDT---FSVL-LFGGFL----LWAVVGVWSGDRRARKRYG--EAFVAPVQVTSR-IPFAA 175 (219)
T ss_pred ecCchhHHHHHHHHHHhhccCce---eeHH-HHHHHH----HHHHHHhhhhhhhhhcccC--cceeeeeccccc-cchhh
Confidence 79999999888766665553321 1111 222222 2223346889999999999 577665555554 56532
Q ss_pred ----CCCcccchhhHh
Q psy4061 82 ----SVYVEVPKFLKF 93 (119)
Q Consensus 82 ----~~~~~~~~~~~~ 93 (119)
++.-..-.+||.
T Consensus 176 I~~Gr~~l~~d~~i~~ 191 (219)
T COG4094 176 ILGGRQRLVWDEFIKP 191 (219)
T ss_pred hhcCceeeeccccchH
Confidence 222234455655
No 18
>KOG1640|consensus
Probab=94.66 E-value=0.056 Score=43.82 Aligned_cols=66 Identities=18% Similarity=0.330 Sum_probs=39.4
Q ss_pred CccchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhcCCCHHHHHHHhhcCCccccC
Q psy4061 1 MSRHPNYFGEIVLWWGMFIISLNVIRGAEFVCVLSPIFITLIILFLSGIPLLERSSDHKYRDNAKYQYYKKSTSPLIPIP 80 (119)
Q Consensus 1 ysRHPnY~Ge~l~~~g~~l~~~~~~~~~~w~~~i~pl~~~~ll~~~~~i~~~E~~~~~kyG~~~~Y~~Y~~~t~~~IP~~ 80 (119)
++-.|||++|+++..|++...-. ..+|.+++-++.. +++. +-.+.+-..+|| ++|.+....+||+.
T Consensus 238 ~Vs~Ph~L~Ei~iY~~ia~~~~~----~~iwLv~~~V~~N--~t~a--A~~Th~wY~~kF------~~yp~~R~AiiPfl 303 (304)
T KOG1640|consen 238 LVSCPHYLAEIIIYVGIALGAPD----LTIWLVFGWVAAN--LTYA--ALETHRWYLKKF------ENYPKNRHAIIPFL 303 (304)
T ss_pred ecCChHHHHHHHHHHHHHhcCCc----hHHHHHHHHHHHH--HHHH--HHHHHHHHHHhh------ccCccccccccccc
Confidence 35689999999999997665432 2344333222211 1111 122333345555 78899999999985
No 19
>KOG1639|consensus
Probab=93.88 E-value=0.088 Score=42.17 Aligned_cols=21 Identities=33% Similarity=0.580 Sum_probs=18.7
Q ss_pred ccchhHHHHHHHHHHHHHHHH
Q psy4061 2 SRHPNYFGEIVLWWGMFIISL 22 (119)
Q Consensus 2 sRHPnY~Ge~l~~~g~~l~~~ 22 (119)
+-.|||+-|+.-|+|+.++.-
T Consensus 233 vscpNYt~Ev~sWi~F~i~tq 253 (297)
T KOG1639|consen 233 VSCPNYTYEVGSWIGFAIMTQ 253 (297)
T ss_pred EecCCcceehHHHHHHHHHHH
Confidence 568999999999999999864
No 20
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=78.80 E-value=9.1 Score=31.50 Aligned_cols=76 Identities=16% Similarity=0.239 Sum_probs=46.1
Q ss_pred ccchhHHHHHHHHHHHHHHHHhhhhhhHHHH-HHHHHHHHHHHHHHhcchHHHHHHHhhcCCCHHHHHHHhhcC-Ccccc
Q psy4061 2 SRHPNYFGEIVLWWGMFIISLNVIRGAEFVC-VLSPIFITLIILFLSGIPLLERSSDHKYRDNAKYQYYKKSTS-PLIPI 79 (119)
Q Consensus 2 sRHPnY~Ge~l~~~g~~l~~~~~~~~~~w~~-~i~pl~~~~ll~~~~~i~~~E~~~~~kyG~~~~Y~~Y~~~t~-~~IP~ 79 (119)
.|++.|+|..+=..+++.......++. |.. +++.+++ ++..++- . +-|++|++++- .+.|.
T Consensus 276 lR~~ey~gl~lRL~~i~~l~i~~~~~~-wl~~iv~~l~~-yl~~~QL-----------~----~l~~~~~~~~~~~lyP~ 338 (386)
T PF05975_consen 276 LRSGEYLGLYLRLTLIGALLIFFLPGS-WLSLIVGLLFL-YLTGFQL-----------L----PLWRHFDYSPWTHLYPI 338 (386)
T ss_pred HhCccHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHH-HHHHHHH-----------H----HHHHHHHhCcchhhCCC
Confidence 599999999988887777655443333 443 3333332 2222221 1 56778887774 67788
Q ss_pred CCCC-CcccchhhHhh
Q psy4061 80 PPSV-YVEVPKFLKFI 94 (119)
Q Consensus 80 ~~~~-~~~~~~~~~~~ 94 (119)
..+. .+++.+.++..
T Consensus 339 ~~~~k~~a~~~~l~~l 354 (386)
T PF05975_consen 339 SEKQKQKAFRKVLRRL 354 (386)
T ss_pred ChhHHHHHHHHHHHHH
Confidence 7664 33566776663
No 21
>PLN02797 phosphatidyl-N-dimethylethanolamine N-methyltransferase
Probab=68.04 E-value=4.7 Score=30.11 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=18.8
Q ss_pred CccchhHHHHHHHHHHHHHHH
Q psy4061 1 MSRHPNYFGEIVLWWGMFIIS 21 (119)
Q Consensus 1 ysRHPnY~Ge~l~~~g~~l~~ 21 (119)
+.+||||.|..+..+|.+++-
T Consensus 112 v~~nPmY~GStl~fLg~al~~ 132 (164)
T PLN02797 112 VIRDPQYVGSILSLLACLSWV 132 (164)
T ss_pred CCCCcchhhHHHHHHHHHHHh
Confidence 368999999999999999875
No 22
>PRK10527 hypothetical protein; Provisional
Probab=64.45 E-value=22 Score=25.29 Aligned_cols=29 Identities=7% Similarity=0.020 Sum_probs=19.4
Q ss_pred HHHHHhcchHHHHHHHh--hcCCCHHHHHHHhh
Q psy4061 42 IILFLSGIPLLERSSDH--KYRDNAKYQYYKKS 72 (119)
Q Consensus 42 ll~~~~~i~~~E~~~~~--kyG~~~~Y~~Y~~~ 72 (119)
...|..+.++.|+.+.+ +|| +-=++|+++
T Consensus 36 a~cfaRsSpR~~~WL~~h~~fG--p~i~~w~~~ 66 (125)
T PRK10527 36 AWCFARSSPRFHAWLLYRSWFG--SYLRHWQQH 66 (125)
T ss_pred HHHHHcCCHHHHHHHHcCchhh--HHHHHHHHC
Confidence 33455557888888864 788 666666665
No 23
>TIGR00026 hi_GC_TIGR00026 deazaflavin-dependent nitroreductase family protein. This model represents a family of proteins found in paralogous families in the genera Mycobacterium and Streptomyces. Seven members are in Mycobacterium tuberculosis. Member protein Rv3547 has been characterized as a deazaflavin-dependent nitroreductase.
Probab=45.55 E-value=15 Score=25.42 Aligned_cols=21 Identities=29% Similarity=0.498 Sum_probs=16.8
Q ss_pred HhhcCCCHHHHHHHhhcCCccccC
Q psy4061 57 DHKYRDNAKYQYYKKSTSPLIPIP 80 (119)
Q Consensus 57 ~~kyG~~~~Y~~Y~~~t~~~IP~~ 80 (119)
.++| +.|++||++|.+=||-+
T Consensus 90 ~~~~---p~~~~yq~~t~R~ipv~ 110 (113)
T TIGR00026 90 VRLY---PRYGRYQSRTDRPIPVF 110 (113)
T ss_pred HHHC---cCHHHHHhhCCCcccEE
Confidence 4566 58999999999888754
No 24
>PF11241 DUF3043: Protein of unknown function (DUF3043); InterPro: IPR021403 Some members in this family of proteins with unknown function are annotated as membrane proteins. This cannot be confirmed.
Probab=39.12 E-value=1.7e+02 Score=22.04 Aligned_cols=19 Identities=16% Similarity=0.391 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q psy4061 7 YFGEIVLWWGMFIISLNVI 25 (119)
Q Consensus 7 Y~Ge~l~~~g~~l~~~~~~ 25 (119)
.+||+++-+.+.++.++..
T Consensus 76 ~i~e~fmP~alv~lv~~~v 94 (170)
T PF11241_consen 76 NIGEFFMPVALVLLVLSFV 94 (170)
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 4677777777766655443
No 25
>KOG4142|consensus
Probab=36.45 E-value=82 Score=24.04 Aligned_cols=22 Identities=18% Similarity=0.430 Sum_probs=19.0
Q ss_pred ccchhHHHHHHHHHHHHHHHHh
Q psy4061 2 SRHPNYFGEIVLWWGMFIISLN 23 (119)
Q Consensus 2 sRHPnY~Ge~l~~~g~~l~~~~ 23 (119)
.-||||-|.-+-.+|+++.-+.
T Consensus 146 ~dNPMY~GSTl~fLg~Al~~gk 167 (208)
T KOG4142|consen 146 LDNPMYWGSTLNFLGWALMHGK 167 (208)
T ss_pred cCCcccccchHHHHHHHHHcCC
Confidence 4589999999999999998654
No 26
>KOG0498|consensus
Probab=36.29 E-value=1.2e+02 Score=27.77 Aligned_cols=19 Identities=26% Similarity=0.448 Sum_probs=16.5
Q ss_pred chhHHHHHHHHHHHHHHHH
Q psy4061 4 HPNYFGEIVLWWGMFIISL 22 (119)
Q Consensus 4 HPnY~Ge~l~~~g~~l~~~ 22 (119)
|||+.||+++-+.+++++.
T Consensus 315 ~s~~~~E~iFsi~~mi~Gl 333 (727)
T KOG0498|consen 315 HANNMGEKIFSIFIMLFGL 333 (727)
T ss_pred CCCCcHHHHHHHHHHHHhH
Confidence 8999999999888888764
No 27
>COG4059 MtrE Tetrahydromethanopterin S-methyltransferase, subunit E [Coenzyme metabolism]
Probab=34.61 E-value=38 Score=27.07 Aligned_cols=31 Identities=16% Similarity=0.452 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHhhcC
Q psy4061 29 EFVCVLSPIFITLIILFLSGIPLLERSSDHKYR 61 (119)
Q Consensus 29 ~w~~~i~pl~~~~ll~~~~~i~~~E~~~~~kyG 61 (119)
.|..++..+.+.+++.+.. +..|.+.+++||
T Consensus 262 G~isiv~Gliiv~iLii~N--~kvEv~ARn~YG 292 (304)
T COG4059 262 GWISIVAGLIIVLILIIWN--RKVEVKARNAYG 292 (304)
T ss_pred chhhhHHHHHHHHHHHHhc--chhhhhhhhccC
Confidence 3555555555555555543 568999999998
No 28
>PF04075 DUF385: Domain of unknown function (DUF385) ; InterPro: IPR004378 This entry represents a family of proteins found in paralogous families in the genera Mycobacterium and Streptomyces. Seven members are in Mycobacterium tuberculosis. Member protein Rv3547 has been characterised as a deazaflavin-dependent nitroreductase [, ]. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3R5Y_D 3R5W_A 3R5R_E 3R5L_A 3R5P_A 3R5Z_B 3H96_A.
Probab=32.65 E-value=40 Score=23.89 Aligned_cols=20 Identities=30% Similarity=0.516 Sum_probs=15.7
Q ss_pred HhhcCCCHHHHHHHhhcCCcccc
Q psy4061 57 DHKYRDNAKYQYYKKSTSPLIPI 79 (119)
Q Consensus 57 ~~kyG~~~~Y~~Y~~~t~~~IP~ 79 (119)
.++| +.|++|+++|.+=||-
T Consensus 108 ~~~~---p~~~~y~~~t~R~ipv 127 (132)
T PF04075_consen 108 VAAY---PGYADYQARTGRRIPV 127 (132)
T ss_dssp HHHS---THHHHHHHHCSSTS-E
T ss_pred HHHC---cChHHhcccCCCEeeE
Confidence 4567 6899999999988884
No 29
>PRK00972 tetrahydromethanopterin S-methyltransferase subunit E; Provisional
Probab=32.62 E-value=84 Score=25.51 Aligned_cols=30 Identities=23% Similarity=0.455 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHhhcC
Q psy4061 30 FVCVLSPIFITLIILFLSGIPLLERSSDHKYR 61 (119)
Q Consensus 30 w~~~i~pl~~~~ll~~~~~i~~~E~~~~~kyG 61 (119)
|.+++..+.+.+++.... +..|...++|||
T Consensus 260 ~~aii~Gliivl~~~i~n--r~iEv~aR~~yG 289 (292)
T PRK00972 260 WGAIIVGLIIVLILIIIN--RKLEVWARKKYG 289 (292)
T ss_pred hHHHHHHHHHHHHHHHHH--HHHHHHHHhhcC
Confidence 555555555555554444 678999999998
No 30
>PF09451 ATG27: Autophagy-related protein 27; InterPro: IPR018939 Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. There are more than 25 AuTophaGy-related (ATG) genes that are essential for autophagy, although it is still not known how the autophagosome is made. Atg9 is a potential membrane carrier to deliver lipids that are used to form the vesicle. Atg27 is another transmembrane protein, and is a cycling protein []. It acts as an effector of VPS34 phosphatidylinositol 3-phosphate kinase signalling and regulates the cytoplasm to vacuole transport (Cvt) vesicle formation. It is also required for autophagy-dependent cycling of ATG9.
Probab=32.12 E-value=24 Score=27.77 Aligned_cols=29 Identities=24% Similarity=0.335 Sum_probs=20.2
Q ss_pred HHHHHhhcCCccccCCCCCcccchhhHhhh
Q psy4061 66 YQYYKKSTSPLIPIPPSVYVEVPKFLKFIL 95 (119)
Q Consensus 66 Y~~Y~~~t~~~IP~~~~~~~~~~~~~~~~~ 95 (119)
|..|.++=.-+||.. --+++||..+|-.+
T Consensus 226 ~~~~g~~g~e~iP~~-dfw~~lP~l~kd~~ 254 (268)
T PF09451_consen 226 YNRYGARGFELIPHF-DFWRSLPYLIKDGV 254 (268)
T ss_pred eccCCCCCceecccH-hHHHhchHHHHHHH
Confidence 344444545688877 66899999998843
No 31
>PF09124 Endonuc-dimeris: T4 recombination endonuclease VII, dimerisation; InterPro: IPR015208 This entry represents a dimerisation domain predominantly found in Bacteriophage T4 recombination endonuclease VII. It adopts a helical secondary structure, with three alpha helices oriented parallel to each other. As well as mediating dimerisation of the protein, this domain is also involved in binding to the DNA major groove []. ; PDB: 1EN7_B 1E7L_B 2QNF_A 2QNC_A 1E7D_A.
Probab=31.91 E-value=41 Score=20.74 Aligned_cols=13 Identities=31% Similarity=0.974 Sum_probs=9.4
Q ss_pred chhHHHHHHHHHH
Q psy4061 4 HPNYFGEIVLWWG 16 (119)
Q Consensus 4 HPnY~Ge~l~~~g 16 (119)
||||.++..=|++
T Consensus 2 HP~fv~D~~K~FS 14 (54)
T PF09124_consen 2 HPQFVPDKVKWFS 14 (54)
T ss_dssp -THHHHHHHHHHH
T ss_pred CccchhHHHHHHH
Confidence 8999998876654
No 32
>PF09187 DUF1950: Domain of unknown function(DUF1950); InterPro: IPR015270 Members of this family are a set of functionally uncharacterised hypothetical eukaryotic proteins []. ; PDB: 2Q3T_A 1VK5_A 3GAN_A.
Probab=31.02 E-value=39 Score=23.86 Aligned_cols=49 Identities=27% Similarity=0.347 Sum_probs=26.8
Q ss_pred HHHHHHHhhcCC------ccccCCCCCcccchhhHh-----------hhhhhccccccccCCCCCCCC
Q psy4061 64 AKYQYYKKSTSP------LIPIPPSVYVEVPKFLKF-----------ILCCEYPLYDWMSEHPTDPPD 114 (119)
Q Consensus 64 ~~Y~~Y~~~t~~------~IP~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~ 114 (119)
+-|++|+++.|. .||+. .|..+-++||. +++.+|=-..+-|+.-..|-|
T Consensus 6 emYQ~yMk~iPIP~~rgs~Ip~~--sW~gL~~SiKqlYgQPLHYLTn~llkqWDq~RiGs~dE~kpLd 71 (119)
T PF09187_consen 6 EMYQDYMKQIPIPSSRGSVIPFT--SWMGLGRSIKQLYGQPLHYLTNILLKQWDQSRIGSEDEHKPLD 71 (119)
T ss_dssp HHHHHHHHTS---SSSSS----S--SHHHHHHHHHHHHT----HHHHHHHHHHHHTTTT-SS----GG
T ss_pred HHHHHHHHcCCCCCCCCCccccc--hHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccCCccccCcHH
Confidence 578999998652 33332 33445557776 778888877777776555544
No 33
>PF15320 RAM: mRNA cap methylation, RNMT-activating mini protein
Probab=30.35 E-value=50 Score=21.84 Aligned_cols=21 Identities=24% Similarity=0.468 Sum_probs=15.1
Q ss_pred HHHHHhhcC-CCHHHHHHHhhc
Q psy4061 53 ERSSDHKYR-DNAKYQYYKKST 73 (119)
Q Consensus 53 E~~~~~kyG-~~~~Y~~Y~~~t 73 (119)
|+....+|- ++++|++|+++-
T Consensus 4 Ee~Fa~RfTe~D~ey~~~~~~~ 25 (81)
T PF15320_consen 4 EEEFADRFTEDDEEYMEYCKRP 25 (81)
T ss_pred HHHHHHhccccCHHHHHHHhCC
Confidence 555666776 468899999863
No 34
>PHA02677 hypothetical protein; Provisional
Probab=29.76 E-value=1.2e+02 Score=21.22 Aligned_cols=33 Identities=9% Similarity=0.132 Sum_probs=20.7
Q ss_pred HHHHHhcchHHHHHHHhhcCCCHHHHHHHhhcCCcc
Q psy4061 42 IILFLSGIPLLERSSDHKYRDNAKYQYYKKSTSPLI 77 (119)
Q Consensus 42 ll~~~~~i~~~E~~~~~kyG~~~~Y~~Y~~~t~~~I 77 (119)
++.|=.-+|.--|++.+.| ++|.+|++--+.++
T Consensus 12 ILIFNIiVP~I~EKlR~E~---~Af~ky~~l~~~~~ 44 (108)
T PHA02677 12 VLIFNILVPGIFEKLRQEH---AAFDRLANAGDVYR 44 (108)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHhcCCcEE
Confidence 3334344676556666655 79999998755544
No 35
>COG2832 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.34 E-value=2.3e+02 Score=20.14 Aligned_cols=30 Identities=7% Similarity=0.052 Sum_probs=18.0
Q ss_pred HHHHHHhcchHHHHHHHh--hcCCCHHHHHHHhh
Q psy4061 41 LIILFLSGIPLLERSSDH--KYRDNAKYQYYKKS 72 (119)
Q Consensus 41 ~ll~~~~~i~~~E~~~~~--kyG~~~~Y~~Y~~~ 72 (119)
....|..+.++-|+.+.+ .|| +-=++|++.
T Consensus 35 aa~cFaRsSpRf~~WLl~~~~fg--~~v~~~~e~ 66 (119)
T COG2832 35 AAACFARSSPRFHAWLLRHKYFG--PYVRDWREG 66 (119)
T ss_pred HHHHHHcCCcHHHHHHHcCchhh--HHHHHHHHc
Confidence 334455557888888764 576 555555553
No 36
>PF00499 Oxidored_q3: NADH-ubiquinone/plastoquinone oxidoreductase chain 6; InterPro: IPR001457 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. this entry represents chain 6 from NADH:ubiquinone oxidoreductase and NADH-plastoquinone oxidoreductase. Bacterial proton-translocating NADH-quinone oxidoreductase (NDH-1) is composed of 14 different subunits. The chain belonging to this family is a subunit that constitutes the membrane sector of the complex. It reduces ubiquinone to ubiquinol utilising NADH. Plant chloroplastic NADH-plastoquinone oxidoreductase reduces plastoquinone to plastoquinol. Mitochondrial NADH-ubiquinone oxidoreductase from a variety of sources reduces ubiquinone to ubiquinol.; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0055114 oxidation-reduction process; PDB: 3RKO_J.
Probab=23.88 E-value=2.3e+02 Score=19.02 Aligned_cols=30 Identities=27% Similarity=0.464 Sum_probs=18.8
Q ss_pred ccchhHHHHHHHHHHHHHHHHhhhhhhHHH
Q psy4061 2 SRHPNYFGEIVLWWGMFIISLNVIRGAEFV 31 (119)
Q Consensus 2 sRHPnY~Ge~l~~~g~~l~~~~~~~~~~w~ 31 (119)
++||.+.+-.++...+.+.......+..|.
T Consensus 10 ~~~p~~~~~~li~~~l~~~~~~~~~~~~~~ 39 (144)
T PF00499_consen 10 SKSPLYSGLSLILLSLFISFLYSLLGSSWY 39 (144)
T ss_dssp --SHHHHHHHHHHHHHHHHHHHHHTT-HHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 689999998888877766655444444443
No 37
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=23.00 E-value=2.2e+02 Score=21.94 Aligned_cols=18 Identities=6% Similarity=-0.149 Sum_probs=10.2
Q ss_pred HHHHhhcCCccccCCCCCc
Q psy4061 67 QYYKKSTSPLIPIPPSVYV 85 (119)
Q Consensus 67 ~~Y~~~t~~~IP~~~~~~~ 85 (119)
..|...++.+ |.+.-+..
T Consensus 91 AAyr~Gv~~w-~~~~d~~~ 108 (197)
T PRK12585 91 AAYDTGVPLA-IRIRDQLR 108 (197)
T ss_pred HHHHcCCCcc-hhhHHHHH
Confidence 5566666666 66544433
No 38
>PF10028 DUF2270: Predicted integral membrane protein (DUF2270); InterPro: IPR014470 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=21.88 E-value=3.7e+02 Score=20.54 Aligned_cols=39 Identities=10% Similarity=0.085 Sum_probs=24.0
Q ss_pred hhcCCCHHHHHHHhhcC-----CccccCCCCCcccchhhHhhhhhhc
Q psy4061 58 HKYRDNAKYQYYKKSTS-----PLIPIPPSVYVEVPKFLKFILCCEY 99 (119)
Q Consensus 58 ~kyG~~~~Y~~Y~~~t~-----~~IP~~~~~~~~~~~~~~~~~~~~~ 99 (119)
.|| -.|.-|+.||. .+-|.+.......-.-+++.|..|+
T Consensus 63 RRY---R~ydv~R~RvR~lE~~~~A~~L~p~~~~~~~~W~~~La~dl 106 (185)
T PF10028_consen 63 RRY---RFYDVWRARVRWLERNFFAPMLDPSQGVEDPDWREELAEDL 106 (185)
T ss_pred HHH---HHHHHHHHHHHHHHHHhhHHHhCCCCCCCCccHHHHHHHHH
Confidence 357 47888888875 3445555434445555666666554
No 39
>TIGR01113 mtrE N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit E. coenzyme M methyltransferase subunit E in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=20.55 E-value=4.4e+02 Score=21.39 Aligned_cols=12 Identities=17% Similarity=0.196 Sum_probs=10.5
Q ss_pred hHHHHHHHhhcC
Q psy4061 50 PLLERSSDHKYR 61 (119)
Q Consensus 50 ~~~E~~~~~kyG 61 (119)
+..|...++|||
T Consensus 270 r~iEv~aR~~yG 281 (283)
T TIGR01113 270 RKIEVFARNAYG 281 (283)
T ss_pred HHHHHHHHHhcC
Confidence 568999999998
Done!