Query psy4061
Match_columns 119
No_of_seqs 122 out of 1043
Neff 6.1
Searched_HMMs 29240
Date Sat Aug 17 00:20:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4061.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4061hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a2n_B Isoprenylcysteine carbo 99.8 1.3E-18 4.5E-23 130.3 8.3 70 1-80 123-193 (194)
2 3r5y_A Putative uncharacterize 74.7 1.6 5.5E-05 30.8 2.2 21 57-80 122-142 (147)
3 3h96_A F420-H2 dependent reduc 68.2 2.9 9.8E-05 29.3 2.3 21 57-80 116-138 (143)
4 3r5z_A Putative uncharacterize 68.1 2.8 9.6E-05 29.5 2.2 21 57-80 120-140 (145)
5 3r5l_A Deazaflavin-dependent n 64.1 0.88 3E-05 31.2 -1.1 22 56-80 97-118 (122)
6 1wlp_A Cytochrome B-245 light 57.5 3 0.0001 21.2 0.6 14 105-118 5-18 (26)
7 2knc_B Integrin beta-3; transm 33.1 89 0.003 19.4 6.5 7 5-11 8-14 (79)
8 1pp9_G Ubiquinol-cytochrome C 15.9 2.2E+02 0.0074 17.8 4.0 35 29-67 44-78 (81)
9 1ny9_A Transcriptional activat 13.5 40 0.0014 22.6 0.0 23 55-77 24-46 (143)
10 1vk5_A Expressed protein; stru 12.8 76 0.0026 22.3 1.3 56 53-113 35-107 (157)
No 1
>4a2n_B Isoprenylcysteine carboxyl methyltransferase; membrane protein, RAS and RHO gtpases signallin; HET: SAH PLM CDL; 3.40A {Methanosarcina acetivorans}
Probab=99.76 E-value=1.3e-18 Score=130.28 Aligned_cols=70 Identities=21% Similarity=0.264 Sum_probs=54.3
Q ss_pred CccchhHHHHHHHHHHHHHHHHhhhhhhHHHHHH-HHHHHHHHHHHHhcchHHHHHHHhhcCCCHHHHHHHhhcCCcccc
Q psy4061 1 MSRHPNYFGEIVLWWGMFIISLNVIRGAEFVCVL-SPIFITLIILFLSGIPLLERSSDHKYRDNAKYQYYKKSTSPLIPI 79 (119)
Q Consensus 1 ysRHPnY~Ge~l~~~g~~l~~~~~~~~~~w~~~i-~pl~~~~ll~~~~~i~~~E~~~~~kyG~~~~Y~~Y~~~t~~~IP~ 79 (119)
+||||||+|++++++|+++...+ ++.++ ++++++++ +..+++.||+.+.++|| ++|++||++|+++||+
T Consensus 123 ~vRHP~Y~G~~l~~~g~~l~~~s------~~~~~~~~~~~~~~--~~~ri~~EE~~L~~~fG--~~Y~~Y~~rv~r~iP~ 192 (194)
T 4a2n_B 123 NIRHPMYAHLWLWVITQGIILSN------WVVLIFGIVAWAIL--YFIRVPKEEELLIEEFG--DEYIEYMGKTGRLFPK 192 (194)
T ss_dssp TBSSHHHHHHHHHHHHHHHHHTC------HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHT--HHHHHHHHHCBSSSCC
T ss_pred hccCccHHHHHHHHHHHHHHhcc------HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhC--HHHHHHHHhCCeeCce
Confidence 69999999999999999998654 33322 23322222 33568999999999999 8999999999999998
Q ss_pred C
Q psy4061 80 P 80 (119)
Q Consensus 80 ~ 80 (119)
+
T Consensus 193 i 193 (194)
T 4a2n_B 193 V 193 (194)
T ss_dssp -
T ss_pred e
Confidence 5
No 2
>3r5y_A Putative uncharacterized protein; PA-824, nitroimidazoles, split barrel-like fold, DUF385, DEA dependent nitroreductase, unknown function; HET: F42; 1.80A {Nocardia farcinica}
Probab=74.70 E-value=1.6 Score=30.82 Aligned_cols=21 Identities=38% Similarity=0.664 Sum_probs=17.6
Q ss_pred HhhcCCCHHHHHHHhhcCCccccC
Q psy4061 57 DHKYRDNAKYQYYKKSTSPLIPIP 80 (119)
Q Consensus 57 ~~kyG~~~~Y~~Y~~~t~~~IP~~ 80 (119)
.++| +.|.+||++|.|-||-+
T Consensus 122 ~~~~---P~y~~Yq~~t~R~IPv~ 142 (147)
T 3r5y_A 122 VRAY---PTYQEYQDNTRRLIPVL 142 (147)
T ss_dssp HHHC---THHHHHHHTCSSCCCEE
T ss_pred HHHC---CCHHHHHhhcCCcCcEE
Confidence 4567 69999999999999854
No 3
>3h96_A F420-H2 dependent reductase A; pnpox, flavin, aflatoxin, flavoprotein; 2.00A {Mycobacterium smegmatis str}
Probab=68.22 E-value=2.9 Score=29.35 Aligned_cols=21 Identities=29% Similarity=0.607 Sum_probs=17.4
Q ss_pred HhhcCCCHHHHHHHhhcC--CccccC
Q psy4061 57 DHKYRDNAKYQYYKKSTS--PLIPIP 80 (119)
Q Consensus 57 ~~kyG~~~~Y~~Y~~~t~--~~IP~~ 80 (119)
.++| +.|++|+++|. |-||-+
T Consensus 116 ~~~~---P~y~~Yq~~t~~~R~iPv~ 138 (143)
T 3h96_A 116 ARRY---PGFADYEKKTAGIRTIPVL 138 (143)
T ss_dssp HHHC---THHHHHHHHTTTTCCCCEE
T ss_pred HHHC---cCHHHHHHhcCCCCcccEE
Confidence 4567 68999999999 998854
No 4
>3r5z_A Putative uncharacterized protein; split barrel-like fold, DUF385, deazaflavin-dependent reduct F420-dependent reductase, FDR; HET: F42; 1.50A {Nocardia farcinica}
Probab=68.14 E-value=2.8 Score=29.49 Aligned_cols=21 Identities=24% Similarity=0.419 Sum_probs=17.5
Q ss_pred HhhcCCCHHHHHHHhhcCCccccC
Q psy4061 57 DHKYRDNAKYQYYKKSTSPLIPIP 80 (119)
Q Consensus 57 ~~kyG~~~~Y~~Y~~~t~~~IP~~ 80 (119)
.++| +.|.+|+++|.+-||-+
T Consensus 120 ~~~~---p~y~~Yq~~t~R~iPv~ 140 (145)
T 3r5z_A 120 VEVW---PDYAEYQTKTTREIPVF 140 (145)
T ss_dssp HHHC---THHHHHGGGCSSCCCEE
T ss_pred HHHC---cCHHHHHHhcCCcCceE
Confidence 4566 69999999999999854
No 5
>3r5l_A Deazaflavin-dependent nitroreductase; PA-824, split barrel-like fold, DUF385, deazaflavin-dependen nitroreductase, nitroimidazoles; HET: MES; 1.55A {Mycobacterium tuberculosis} PDB: 3r5p_A 3r5w_A* 3r5r_A*
Probab=64.07 E-value=0.88 Score=31.15 Aligned_cols=22 Identities=36% Similarity=0.454 Sum_probs=18.0
Q ss_pred HHhhcCCCHHHHHHHhhcCCccccC
Q psy4061 56 SDHKYRDNAKYQYYKKSTSPLIPIP 80 (119)
Q Consensus 56 ~~~kyG~~~~Y~~Y~~~t~~~IP~~ 80 (119)
+.++| +.|++|+++|.+-||-+
T Consensus 97 ~~~~~---p~y~~yq~~t~R~ipv~ 118 (122)
T 3r5l_A 97 LVTMY---PSYQDYQSWTDRTIPIV 118 (122)
T ss_dssp HHHHC---TTCCCTTGGGCTTSCEE
T ss_pred HHHHC---cCHHHHHhhcCCcccEE
Confidence 35677 68999999999999854
No 6
>1wlp_A Cytochrome B-245 light chain; SH3 domain, polyproline, oxidoreductase/signaling protein complex; NMR {Homo sapiens}
Probab=57.53 E-value=3 Score=21.24 Aligned_cols=14 Identities=36% Similarity=0.828 Sum_probs=11.8
Q ss_pred ccCCCCCCCCCCCC
Q psy4061 105 MSEHPTDPPDAAPA 118 (119)
Q Consensus 105 ~~~~~~~~~~~~~~ 118 (119)
++++|+.||.-.|+
T Consensus 5 ikqpP~nPPPRpPa 18 (26)
T 1wlp_A 5 SKQPPSNPPPRPPA 18 (26)
T ss_dssp SCCCCSSCCCCCCH
T ss_pred ccCCCCCcCCCCch
Confidence 67899999988776
No 7
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=33.11 E-value=89 Score=19.42 Aligned_cols=7 Identities=14% Similarity=0.415 Sum_probs=3.5
Q ss_pred hhHHHHH
Q psy4061 5 PNYFGEI 11 (119)
Q Consensus 5 PnY~Ge~ 11 (119)
||..+-+
T Consensus 8 ~n~~~Iv 14 (79)
T 2knc_B 8 PDILVVL 14 (79)
T ss_dssp SCSHHHH
T ss_pred CCchhhH
Confidence 4555544
No 8
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=15.88 E-value=2.2e+02 Score=17.76 Aligned_cols=35 Identities=17% Similarity=0.167 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHhhcCCCHHHH
Q psy4061 29 EFVCVLSPIFITLIILFLSGIPLLERSSDHKYRDNAKYQ 67 (119)
Q Consensus 29 ~w~~~i~pl~~~~ll~~~~~i~~~E~~~~~kyG~~~~Y~ 67 (119)
+|+.++.|+.+.+++.-.. ..+.+++..|-+ ++|+
T Consensus 44 ~~l~v~pPfv~~Y~i~~Wa--~~~~e~~~rKnp--~d~~ 78 (81)
T 1pp9_G 44 CILRVAPPFVAFYLVYTWG--TQEFEKSKRKNP--AAYE 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HHHHHHTTSSCC------
T ss_pred cceeeehhHHHHHHHHHHH--HHHHHHHhCCCH--HHhc
Confidence 4555565655444443332 233344445655 5554
No 9
>1ny9_A Transcriptional activator TIPA-S; all alpha, globin like; NMR {Streptomyces lividans} SCOP: a.181.1.1
Probab=13.47 E-value=40 Score=22.56 Aligned_cols=23 Identities=13% Similarity=0.302 Sum_probs=0.0
Q ss_pred HHHhhcCCCHHHHHHHhhcCCcc
Q psy4061 55 SSDHKYRDNAKYQYYKKSTSPLI 77 (119)
Q Consensus 55 ~~~~kyG~~~~Y~~Y~~~t~~~I 77 (119)
...+|||+.+.|+++.+++..+=
T Consensus 24 Ea~eryG~~~~~~~~~~~~~~~~ 46 (143)
T 1ny9_A 24 EVRERWGNTDAYRQSKEKTASYT 46 (143)
T ss_dssp -----------------------
T ss_pred HHHHHhCChHHHHHHHHHHHcCC
Confidence 45679996588999988876543
No 10
>1vk5_A Expressed protein; structural genomics, unknown function, protein structur initiative, center for eukaryotic structural genomics, CESG; HET: CPS; 1.60A {Arabidopsis thaliana} SCOP: a.220.1.1 PDB: 2q3t_A* 3gan_A*
Probab=12.81 E-value=76 Score=22.34 Aligned_cols=56 Identities=21% Similarity=0.256 Sum_probs=33.4
Q ss_pred HHHHHhhcCCCHHHHHHHhhcCC------ccccCCCCCcccchhhHh-----------hhhhhccccccccCCCCCCC
Q psy4061 53 ERSSDHKYRDNAKYQYYKKSTSP------LIPIPPSVYVEVPKFLKF-----------ILCCEYPLYDWMSEHPTDPP 113 (119)
Q Consensus 53 E~~~~~kyG~~~~Y~~Y~~~t~~------~IP~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~ 113 (119)
|..+.+| . +-|++|+++.|. .||+. .|..+-++||. +|...|=-..+-|+.-..|-
T Consensus 35 e~~liRr-A--EmYQ~YMK~iPIP~~~~s~Ipf~--sW~gL~~SiKQlY~QPLHYLTN~LLkqWDQ~RiGs~dE~kpL 107 (157)
T 1vk5_A 35 EGSLLRR-A--EMYQDYMKQVPIPTNRGSLIPFT--SWVGLSISMKQLYGQPLHYLTNVLLQRWDQSRFGTDSEEQRL 107 (157)
T ss_dssp -CTTHHH-H--HHHHHHHHTSCCCSSCCSCCCCS--SHHHHHHHHHHHHCCCCCHHHHHHHHHHHHTTTTCSSCCCCG
T ss_pred chhhhhH-H--HHHHHHHHhCCCCcccCCcccch--hHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccccCch
Confidence 5555555 2 789999999652 34332 34455567776 66666666666665544443
Done!