Query psy4061
Match_columns 119
No_of_seqs 122 out of 1043
Neff 6.1
Searched_HMMs 13730
Date Sat Aug 17 00:20:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4061.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/4061hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1e7la1 a.140.4.1 (A:104-157) 45.3 5.9 0.00043 22.1 2.0 13 4-16 2-14 (54)
2 d1rgoa2 g.66.1.1 (A:187-220) B 35.3 4 0.00029 20.6 0.1 7 2-8 1-7 (34)
3 d2e74g1 f.23.26.1 (G:9-35) Pet 27.8 30 0.0022 16.1 2.8 8 64-71 16-23 (27)
4 d1vk5a_ a.220.1.1 (A:) Hypothe 17.7 28 0.002 22.0 1.7 48 64-113 8-72 (121)
5 d1whca_ a.5.2.1 (A:) UBA/UBX 3 9.1 21 0.0016 19.9 -0.8 17 101-117 41-57 (64)
6 d2csba4 a.60.2.4 (A:465-519) T 6.7 96 0.007 16.3 1.3 20 48-70 11-31 (55)
7 d1wjia_ a.5.2.1 (A:) Tudor dom 6.7 33 0.0024 18.9 -0.8 10 103-112 42-51 (63)
8 d2p06a1 a.204.1.3 (A:1-84) Hyp 5.8 1.7E+02 0.012 16.5 2.2 19 51-75 6-24 (84)
9 d1ng7a_ a.178.1.1 (A:) Soluble 5.7 1.5E+02 0.011 16.3 1.7 17 64-80 32-48 (60)
10 d1tzyc_ a.22.1.1 (C:) Histone 5.5 1E+02 0.0073 18.3 1.0 12 67-78 12-23 (95)
No 1
>d1e7la1 a.140.4.1 (A:104-157) Recombination endonuclease VII, C-terminal and dimerization domains {Bacteriophage T4 [TaxId: 10665]}
Probab=45.34 E-value=5.9 Score=22.10 Aligned_cols=13 Identities=31% Similarity=0.677 Sum_probs=10.5
Q ss_pred chhHHHHHHHHHH
Q psy4061 4 HPNYFGEIVLWWG 16 (119)
Q Consensus 4 HPnY~Ge~l~~~g 16 (119)
||||+++..=+++
T Consensus 2 Hp~~~~D~~K~FS 14 (54)
T d1e7la1 2 HPNFVGDKSKEFS 14 (54)
T ss_dssp CTHHHHHHHHHHH
T ss_pred CcchhhHHHHHHH
Confidence 9999998876654
No 2
>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.35 E-value=4 Score=20.59 Aligned_cols=7 Identities=57% Similarity=1.194 Sum_probs=4.3
Q ss_pred ccchhHH
Q psy4061 2 SRHPNYF 8 (119)
Q Consensus 2 sRHPnY~ 8 (119)
+|||.|-
T Consensus 1 ~rhpkyK 7 (34)
T d1rgoa2 1 TRHPKYK 7 (34)
T ss_dssp CCCTTTT
T ss_pred CCCCCcc
Confidence 5677664
No 3
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=27.83 E-value=30 Score=16.13 Aligned_cols=8 Identities=63% Similarity=1.020 Sum_probs=5.0
Q ss_pred HHHHHHHh
Q psy4061 64 AKYQYYKK 71 (119)
Q Consensus 64 ~~Y~~Y~~ 71 (119)
.+|++|++
T Consensus 16 aayqqykr 23 (27)
T d2e74g1 16 AAYQQYKR 23 (27)
T ss_dssp HHHHHTTS
T ss_pred HHHHHhcC
Confidence 46777764
No 4
>d1vk5a_ a.220.1.1 (A:) Hypothetical protein At3g22680 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=17.73 E-value=28 Score=22.03 Aligned_cols=48 Identities=21% Similarity=0.299 Sum_probs=30.0
Q ss_pred HHHHHHHhhcCC------ccccCCCCCcccchhhHh-----------hhhhhccccccccCCCCCCC
Q psy4061 64 AKYQYYKKSTSP------LIPIPPSVYVEVPKFLKF-----------ILCCEYPLYDWMSEHPTDPP 113 (119)
Q Consensus 64 ~~Y~~Y~~~t~~------~IP~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~ 113 (119)
+-|++|+++.|. .||+ ..|..+-++||. ++..+|--..+-|+.-..|-
T Consensus 8 emYQ~yMk~iPIP~~~~s~Ipf--~tW~gL~~SiKQlY~QPLHYLTn~lLk~WDq~Rigs~dE~k~l 72 (121)
T d1vk5a_ 8 EMYQDYMKQVPIPTNRGSLIPF--TSWVGLSISMKQLYGQPLHYLTNVLLQRWDQSRFGTDSEEQRL 72 (121)
T ss_dssp HHHHHHHHTSCCCSSCCSCCCC--SSHHHHHHHHHHHHCCCCCHHHHHHHHHHHHTTTTCSSCCCCG
T ss_pred HHHHHHHHhCCCCcccCCcccc--hhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhccCCccccCch
Confidence 679999999652 3333 244556667776 66677766666665544443
No 5
>d1whca_ a.5.2.1 (A:) UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.07 E-value=21 Score=19.89 Aligned_cols=17 Identities=41% Similarity=0.862 Sum_probs=10.7
Q ss_pred ccccccCCCCCCCCCCC
Q psy4061 101 LYDWMSEHPTDPPDAAP 117 (119)
Q Consensus 101 ~~~~~~~~~~~~~~~~~ 117 (119)
+++|+-+|+.|+....|
T Consensus 41 A~~Wl~~h~~d~d~~~p 57 (64)
T d1whca_ 41 AMDWLMEHEDDPDVDEP 57 (64)
T ss_dssp HHHHHHHHTTCSCTTCC
T ss_pred HHHHHHHCCCCCCCCCC
Confidence 45677778777654443
No 6
>d2csba4 a.60.2.4 (A:465-519) Topoisomerase V {Methanopyrus kandleri [TaxId: 2320]}
Probab=6.73 E-value=96 Score=16.33 Aligned_cols=20 Identities=25% Similarity=0.268 Sum_probs=12.2
Q ss_pred cchHH-HHHHHhhcCCCHHHHHHH
Q psy4061 48 GIPLL-ERSSDHKYRDNAKYQYYK 70 (119)
Q Consensus 48 ~i~~~-E~~~~~kyG~~~~Y~~Y~ 70 (119)
+|-++ -+++++||| .|.+-+
T Consensus 11 gidreraerllkkyg---gyskvr 31 (55)
T d2csba4 11 GIDRERAERLLKKYG---GYSKVR 31 (55)
T ss_dssp TCCHHHHHHHHHHHT---SHHHHH
T ss_pred cccHHHHHHHHHHhc---ChhHHH
Confidence 44444 456789998 565443
No 7
>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.66 E-value=33 Score=18.88 Aligned_cols=10 Identities=0% Similarity=-0.014 Sum_probs=4.1
Q ss_pred ccccCCCCCC
Q psy4061 103 DWMSEHPTDP 112 (119)
Q Consensus 103 ~~~~~~~~~~ 112 (119)
+|+-+|+.|+
T Consensus 42 ~wL~~~~~~~ 51 (63)
T d1wjia_ 42 NVLLTSNKQK 51 (63)
T ss_dssp HHHHHHSSCC
T ss_pred HHHHHCCCCC
Confidence 3444444433
No 8
>d2p06a1 a.204.1.3 (A:1-84) Hypothetical protein AF0060 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=5.79 E-value=1.7e+02 Score=16.48 Aligned_cols=19 Identities=26% Similarity=0.162 Sum_probs=11.8
Q ss_pred HHHHHHHhhcCCCHHHHHHHhhcCC
Q psy4061 51 LLERSSDHKYRDNAKYQYYKKSTSP 75 (119)
Q Consensus 51 ~~E~~~~~kyG~~~~Y~~Y~~~t~~ 75 (119)
+.|+-+.+.+ .+|+++|.+
T Consensus 6 laekflremh------akymkrvsr 24 (84)
T d2p06a1 6 LAEKFLREMH------AKYMKRVSR 24 (84)
T ss_dssp HHHHHHHHHH------HHHHHHHTS
T ss_pred HHHHHHHHHH------HHHHHHccC
Confidence 4455554443 778888865
No 9
>d1ng7a_ a.178.1.1 (A:) Soluble domain of poliovirus core protein 3a {Poliovirus type 1, strain Mahoney [TaxId: 12080]}
Probab=5.65 E-value=1.5e+02 Score=16.30 Aligned_cols=17 Identities=12% Similarity=0.188 Sum_probs=14.3
Q ss_pred HHHHHHHhhcCCccccC
Q psy4061 64 AKYQYYKKSTSPLIPIP 80 (119)
Q Consensus 64 ~~Y~~Y~~~t~~~IP~~ 80 (119)
++=++||++-+.+||-.
T Consensus 32 eEVReYCk~kgWii~~~ 48 (60)
T d1ng7a_ 32 QEVRDYCEKKGWIVNIT 48 (60)
T ss_dssp HHHHHHHHHHTCCCCCC
T ss_pred HHHHHHHHHCCeeecCC
Confidence 78899999999888643
No 10
>d1tzyc_ a.22.1.1 (C:) Histone H3 {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]}
Probab=5.54 E-value=1e+02 Score=18.34 Aligned_cols=12 Identities=50% Similarity=0.609 Sum_probs=0.0
Q ss_pred HHHHhhcCCccc
Q psy4061 67 QYYKKSTSPLIP 78 (119)
Q Consensus 67 ~~Y~~~t~~~IP 78 (119)
++||+.|..+||
T Consensus 12 Rk~Qkst~lLIp 23 (95)
T d1tzyc_ 12 RRYQKSTELLIR 23 (95)
T ss_dssp HHHHHCCSCCSC
T ss_pred HHHhCCcccccc
Done!