RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4061
(119 letters)
>gnl|CDD|219244 pfam06966, DUF1295, Protein of unknown function (DUF1295). This
family contains a number of bacterial and eukaryotic
proteins of unknown function that are approximately 300
residues long.
Length = 235
Score = 105 bits (265), Expect = 1e-29
Identities = 36/72 (50%), Positives = 54/72 (75%)
Query: 2 SRHPNYFGEIVLWWGMFIISLNVIRGAEFVCVLSPIFITLIILFLSGIPLLERSSDHKYR 61
SRHPNYFGE ++WWG+F+I++NV+ G E+ + P+ +TL+++F+SGIPLLE S KY
Sbjct: 164 SRHPNYFGEALIWWGIFLIAINVLSGLEWWTIAGPLLMTLLLVFVSGIPLLEASMLKKYG 223
Query: 62 DNAKYQYYKKST 73
D Y+ Y++ T
Sbjct: 224 DREDYRAYQRRT 235
>gnl|CDD|226275 COG3752, COG3752, Steroid 5-alpha reductase family enzyme [General
function prediction only].
Length = 272
Score = 67.8 bits (166), Expect = 7e-15
Identities = 26/80 (32%), Positives = 48/80 (60%), Gaps = 5/80 (6%)
Query: 2 SRHPNYFGEIVLWWGMFIISLNVIRGAEFVCVLSPIFITLIILFLSGIPLLERSSDHKYR 61
+RHPNYFGE ++WWG ++I+++ V SP+ +T +++ +SG+P LE + +
Sbjct: 193 TRHPNYFGEALVWWGFYLIAISEWLLL--WAVASPLLMTWLLVHVSGVPPLE---EKMLK 247
Query: 62 DNAKYQYYKKSTSPLIPIPP 81
++ Y++ T+ P PP
Sbjct: 248 SRPGFREYQRRTNAFFPRPP 267
>gnl|CDD|224931 COG2020, STE14, Putative protein-S-isoprenylcysteine
methyltransferase [Posttranslational modification,
protein turnover, chaperones].
Length = 187
Score = 30.5 bits (69), Expect = 0.12
Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 9/78 (11%)
Query: 1 MSRHPNYFGEIVLWWGMFIISLNVIRGAEFVCVLSPIFITLIILFLSGIPLLERSSDHKY 60
+ RHP Y G ++ G ++ ++ VL + I L D +Y
Sbjct: 115 IVRHPIYLGLLLFALGTGLLLGSLWALL-IFVVLVALLFLFRIREEERY-LRAEFGD-EY 171
Query: 61 RDNAKYQYYKKSTSPLIP 78
R+ Y+K LIP
Sbjct: 172 RE------YRKRVPRLIP 183
>gnl|CDD|217954 pfam04191, PEMT, Phospholipid methyltransferase. The S.
cerevisiae phospholipid methyltransferase (EC:2.1.1.16)
has a broad substrate specificity of unsaturated
phospholipids.
Length = 106
Score = 27.5 bits (62), Expect = 1.0
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 2 SRHPNYFGEIVLWWGMFIISLNVIRGAEFVCVLSPIFITLIIL 44
R+P Y G + + G+ +I+ + A + L + I L
Sbjct: 51 LRNPMYVGSTLGFLGLALITGSP---AGLLLALLVFLVYYIAL 90
>gnl|CDD|217095 pfam02544, Steroid_dh, 3-oxo-5-alpha-steroid 4-dehydrogenase. This
family consists of 3-oxo-5-alpha-steroid
4-dehydrogenases, EC:1.3.99.5 Also known as Steroid
5-alpha-reductase, the reaction catalyzed by this enzyme
is: 3-oxo-5-alpha-steroid + acceptor <=>
3-oxo-delta(4)-steroid + reduced acceptor. The Steroid
5-alpha-reductase enzyme is responsible for the
formation of dihydrotestosterone, this hormone promotes
the differentiation of male external genitalia and the
prostate during fetal development. In humans mutations
in this enzyme can cause a form of male
pseudohermaphorditism in which the external genitalia
and prostate fail to develop normally. A related enzyme
is also found in plants is DET2, a steroid reductase
from Arabidopsis. Mutations in this enzyme cause defects
in light-regulated development.
Length = 150
Score = 27.4 bits (61), Expect = 1.4
Identities = 21/74 (28%), Positives = 28/74 (37%), Gaps = 14/74 (18%)
Query: 5 PNYFGEIVLWWGMFIISLNVIRGAEFVCVLSPIFITLIILFLSGIPLLERSSDHKYRDNA 64
PNYFGEI+ W G + + L F + L R+ H
Sbjct: 88 PNYFGEIMEWIGYAL--------------ATWSLPALAFAFFTVCNLTPRAKAHHKWYLK 133
Query: 65 KYQYYKKSTSPLIP 78
K++ Y KS LIP
Sbjct: 134 KFEKYPKSRKALIP 147
>gnl|CDD|178015 PLN02392, PLN02392, probable steroid reductase DET2.
Length = 260
Score = 26.3 bits (58), Expect = 4.4
Identities = 10/12 (83%), Positives = 10/12 (83%)
Query: 5 PNYFGEIVLWWG 16
PNYFGEIV W G
Sbjct: 197 PNYFGEIVEWLG 208
>gnl|CDD|224375 COG1458, COG1458, Predicted DNA-binding protein containing PIN
domain [General function prediction only].
Length = 221
Score = 25.9 bits (57), Expect = 5.2
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 79 IPPSVYVEVPKFLKFILC 96
IPPSVY E+ F++ C
Sbjct: 51 IPPSVYRELMGFMERNGC 68
>gnl|CDD|227379 COG5046, MAF1, Protein involved in Mod5 protein sorting
[Posttranslational modification, protein turnover,
chaperones].
Length = 282
Score = 26.1 bits (57), Expect = 5.3
Identities = 14/46 (30%), Positives = 18/46 (39%)
Query: 66 YQYYKKSTSPLIPIPPSVYVEVPKFLKFILCCEYPLYDWMSEHPTD 111
Y + SP P +L L YP +D+ SE PTD
Sbjct: 112 YAFSLTQQSPFGPYLELSSRSKFNYLFAKLNASYPDHDFSSEAPTD 157
>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2
domain [General function prediction only].
Length = 1227
Score = 25.9 bits (57), Expect = 8.0
Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 6/50 (12%)
Query: 30 FVCVLSPIFITLIILFLS------GIPLLERSSDHKYRDNAKYQYYKKST 73
V S IF L F S + R+ + R N + ++ +
Sbjct: 163 IGSVASWIFGYLGFSFASLFFIILVTMYVYRTCIKRVRRNIRDLVQQELS 212
>gnl|CDD|235291 PRK04358, PRK04358, hypothetical protein; Provisional.
Length = 217
Score = 25.3 bits (56), Expect = 8.5
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 79 IPPSVYVEVPKFLK 92
+PPSVY E+ FL+
Sbjct: 51 MPPSVYKELRGFLE 64
>gnl|CDD|129983 TIGR00905, 2A0302, transporter, basic amino acid/polyamine
antiporter (APA) family. This family includes several
families of antiporters that, rather commonly, are
encoded next to decarboxylases that convert one of the
antiporter substrates into the other. This arrangement
allows a cycle that can remove proteins from the
cytoplasm and thereby protect against acidic conditions
[Transport and binding proteins, Amino acids, peptides
and amines].
Length = 473
Score = 25.4 bits (56), Expect = 8.8
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 6/41 (14%)
Query: 9 GEIVLWWGMFIISLNVIRGAEF------VCVLSPIFITLII 43
G VL W + L +R A F + L P+F+ +II
Sbjct: 132 GASVLLWVFTFLVLRGVRQAAFINTITTIAKLIPLFLFIII 172
>gnl|CDD|117315 pfam08745, UPF0278, UPF0278 family. Members of this family are
uncharacterized proteins about 200 amino acids in
length.
Length = 206
Score = 25.0 bits (55), Expect = 9.1
Identities = 11/20 (55%), Positives = 12/20 (60%)
Query: 79 IPPSVYVEVPKFLKFILCCE 98
IPPSVY E+ FL C E
Sbjct: 47 IPPSVYKELTGFLDRNGCPE 66
>gnl|CDD|216716 pfam01810, LysE, LysE type translocator. This family consists of
various hypothetical proteins and an l-lysine exporter
LysE from Corynebacterium glutamicum which is proposed
to be the first of a novel family of translocators. LysE
exports l-lysine from the cell into the surrounding
medium and is predicted to span the membrane six times.
The physiological function of the exporter is to excrete
excess l-Lysine as a result of natural flux imbalances
or peptide hydrolysis; and also after artificial
deregulation of l-Lysine biosynthesis as used by the
biotechnology. industry for the production of l-lysine.
Length = 191
Score = 24.9 bits (55), Expect = 10.0
Identities = 5/43 (11%), Positives = 14/43 (32%), Gaps = 2/43 (4%)
Query: 12 VLWWGMFIISL--NVIRGAEFVCVLSPIFITLIILFLSGIPLL 52
+L+W + G + + +++ S + L
Sbjct: 114 ILFWLSVGSAFLDKQQYGDAGRIAFAAGLVVASLIWFSLLAFL 156
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.143 0.473
Gapped
Lambda K H
0.267 0.0736 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,418,104
Number of extensions: 557477
Number of successful extensions: 982
Number of sequences better than 10.0: 1
Number of HSP's gapped: 979
Number of HSP's successfully gapped: 46
Length of query: 119
Length of database: 10,937,602
Length adjustment: 82
Effective length of query: 37
Effective length of database: 7,300,574
Effective search space: 270121238
Effective search space used: 270121238
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.2 bits)