RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4061
         (119 letters)



>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta
           subunit {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 325

 Score = 25.0 bits (54), Expect = 2.8
 Identities = 8/31 (25%), Positives = 14/31 (45%)

Query: 84  YVEVPKFLKFILCCEYPLYDWMSEHPTDPPD 114
           +++  K   FIL C+       ++ P D  D
Sbjct: 251 WIDREKLRSFILACQDEETGGFADRPGDMVD 281


>d1whca_ a.5.2.1 (A:) UBA/UBX 33.3 kDa protein {Mouse (Mus musculus)
           [TaxId: 10090]}
          Length = 64

 Score = 23.6 bits (51), Expect = 3.1
 Identities = 7/15 (46%), Positives = 8/15 (53%)

Query: 103 DWMSEHPTDPPDAAP 117
           DW+ EH  DP    P
Sbjct: 43  DWLMEHEDDPDVDEP 57


>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 63

 Score = 23.6 bits (51), Expect = 3.6
 Identities = 3/17 (17%), Positives = 5/17 (29%)

Query: 103 DWMSEHPTDPPDAAPAS 119
           + +       P   P S
Sbjct: 42  NVLLTSNKQKPVMGPPS 58


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.143    0.473 

Gapped
Lambda     K      H
   0.267   0.0402    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 500,287
Number of extensions: 21069
Number of successful extensions: 53
Number of sequences better than 10.0: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 9
Length of query: 119
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 45
Effective length of database: 1,391,576
Effective search space: 62620920
Effective search space used: 62620920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.7 bits)