BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4062
(409 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 160 bits (404), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 107/346 (30%), Positives = 167/346 (48%), Gaps = 73/346 (21%)
Query: 72 HMKVYIRVRPQSQKEEDGCHREIVKILNRDT-IIFDPKQDDSEFFFHGVKQSLRDINKKK 130
++KV +R RP + +E I+++ +I DP + + + + K
Sbjct: 5 NIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQE------------KSATQAK 52
Query: 131 SKEMEFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGNEN 190
F FD VY + N ++ S K +I ++LEG+N ++F YG TGAGKT TM GN+
Sbjct: 53 KVPRTFTFDAVYDQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGGNKE 112
Query: 191 HKGIM-------------------YLTMG-------------IRNRVSALTRQMCTMRMY 218
G + +L +G I+N ++ T +Y
Sbjct: 113 EPGAIPNSFKHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLIKNNTKLPLKEDKTRGIY 172
Query: 219 KTCLILRRKPSICEKMQLM---------VYVKMQDKATKQ-------------------M 250
L + R + E LM +M D +++ +
Sbjct: 173 VDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIENKEVI 232
Query: 251 KMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLADGCRHVPYRDSKL 310
++ KL+++DLAGSER + + EG+ IN SL ALG I+ L +G H+PYRDSKL
Sbjct: 233 RVGKLNLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGATHIPYRDSKL 292
Query: 311 TRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKIKAK 356
TR+L+DSLGGN KT+M ANI+P + +Y+++ +TL+YA RAK+IK K
Sbjct: 293 TRLLQDSLGGNSKTLMCANISPASTNYDETMSTLRYADRAKQIKNK 338
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 152 bits (385), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 71/124 (57%), Positives = 98/124 (79%), Gaps = 6/124 (4%)
Query: 236 LMVYVKMQDKAT---KQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNC 292
+Y++ QDK + +++ K+S+IDLAGSERA+ + + RF EG+NIN+SLLALGN
Sbjct: 232 FQIYLRQQDKTASINQNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNV 291
Query: 293 INSLADGCR---HVPYRDSKLTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATR 349
IN+LAD R H+PYR+SKLTR+LKDSLGGNC+T+MIA ++P+++ Y+D+YNTLKYA R
Sbjct: 292 INALADSKRKNQHIPYRNSKLTRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTLKYANR 351
Query: 350 AKKI 353
AK I
Sbjct: 352 AKDI 355
Score = 139 bits (350), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 65/154 (42%), Positives = 101/154 (65%), Gaps = 18/154 (11%)
Query: 46 SQKEEDGCHSVMTTLELGIIHTGEQSHMKVYIRVRPQSQKEEDGCHREIVKILNRDTIIF 105
S EED CH HMKV +RVRP++ KE+ ++V ++++ ++F
Sbjct: 2 SVTEEDLCH-----------------HMKVVVRVRPENTKEKAAGFHKVVHVVDKHILVF 44
Query: 106 DPKQDDSEFFFHGVKQSLRDINKKKSKEMEFLFDRVYGPSESNQDVYDGSTKDIIASLLE 165
DPKQ++ FF HG K + +++ KK++K+++F+FD V+ + + +V++ +TK I+ S L
Sbjct: 45 DPKQEEVSFF-HGKKTTNQNVIKKQNKDLKFVFDAVFDETSTQSEVFEHTTKPILRSFLN 103
Query: 166 GYNCSVFVYGATGAGKTHTMLGNENHKGIMYLTM 199
GYNC+V YGATGAGKTHTMLG+ + G+MYLTM
Sbjct: 104 GYNCTVLAYGATGAGKTHTMLGSADEPGVMYLTM 137
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 149 bits (377), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 99/304 (32%), Positives = 146/304 (48%), Gaps = 67/304 (22%)
Query: 122 SLRDINKKKSKE-MEFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAG 180
SL N + +E +++ FD YG + QD+Y GS + I+ LLEG N SV YG TGAG
Sbjct: 52 SLEIANWRNHQETLKYQFDAFYGERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAG 111
Query: 181 KTHTMLGNENHKGIMYLTM----------GIRNRVSALTRQMCTMRMYKT---------- 220
KTHTMLG+ G++ + G R AL+ M + +Y+
Sbjct: 112 KTHTMLGSPEQPGVIPRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLLDPAS 171
Query: 221 -CLILRRK-------PSICEK----------------------------------MQLMV 238
L++R P + +K L+V
Sbjct: 172 GDLVIREDCRGNILIPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLV 231
Query: 239 YVKMQDK-ATKQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLA 297
V +++ A + + KL +IDLAGSE + +R KE IN SL LG +++L
Sbjct: 232 KVDQRERLAPFRQREGKLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALN 291
Query: 298 DGCRHVPYRDSKLTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKIKAKV 357
G VPYRDSKLTR+L+DSLGG+ +++IANIAP Y D+ + L +A R+K++ +
Sbjct: 292 QGLPRVPYRDSKLTRLLQDSLGGSAHSILIANIAPERRFYLDTVSALNFAARSKEV---I 348
Query: 358 SRTF 361
+R F
Sbjct: 349 NRPF 352
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 144 bits (364), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 98/379 (25%), Positives = 182/379 (48%), Gaps = 88/379 (23%)
Query: 73 MKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKSK 132
++VY R+RP ++KE ++++ ++ T+ P +DD K
Sbjct: 15 IRVYCRIRPLNEKESSEREKQMLTTVDEFTVEH-PWKDD--------------------K 53
Query: 133 EMEFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGNENHK 192
+ ++DRV+ S D+++ TK ++ S ++GYN +F YG TG+GKT T+ G+E++
Sbjct: 54 RKQHIYDRVFDMRASQDDIFE-DTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGHESNP 112
Query: 193 GI-------MYLTMGIRNRVSALTRQMCTMRMYKTCLILRRKPSICEKMQL--------M 237
G+ ++ + ++ + + + + +Y+ L+ P +++L M
Sbjct: 113 GLTPRATKELFNILKRDSKRFSFSLKAYMVELYQDTLVDLLLPKSARRLKLEIKKDSKGM 172
Query: 238 VYVK----MQDKATKQMKMV---------------------------------------- 253
V+V+ + ++++M+
Sbjct: 173 VFVENVTTIPISTLEELRMILERGSERRHVSGTNMNEESSRSHLILSVVIESIDLQTQSA 232
Query: 254 ---KLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLADGCRHVPYRDSKL 310
KLS +DLAGSER + S + KE +INKSL ALG+ I +L+ G +H+PYR+ KL
Sbjct: 233 ARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVIGALSSGNQHIPYRNHKL 292
Query: 311 TRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKIKAKVSRTFKSGAHFKLE 370
T ++ DSLGGN KT+M N++P + +++YN+L YA+R + I S+ S +L+
Sbjct: 293 TMLMSDSLGGNAKTLMFVNVSPAESNLDETYNSLLYASRVRTIVNDPSKHISSKEMVRLK 352
Query: 371 YLTGGVSKHCRPAVGRRGK 389
L + + G++G+
Sbjct: 353 KLVA----YWKEQAGKKGE 367
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 139 bits (351), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 101/378 (26%), Positives = 178/378 (47%), Gaps = 88/378 (23%)
Query: 73 MKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKSK 132
++VY R+RP +KE R ++ ++ T+ E + K K
Sbjct: 7 IRVYCRLRPLCEKEIIAKERNAIRSVDEFTV---------EHLW------------KDDK 45
Query: 133 EMEFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGNENHK 192
+ ++DRV+ + + DV++ TK ++ S ++GYN +F YG TG+GKT T+ G +++
Sbjct: 46 AKQHMYDRVFDGNATQDDVFE-DTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNP 104
Query: 193 GIMYLTMGIRNRVS-------ALTRQMCTMRMYKTCLILRRKPSICEKMQL--------M 237
G+ M R+ + + + + +Y+ L+ P ++++L M
Sbjct: 105 GLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDSKGM 164
Query: 238 VYVK------------------------------MQDKATKQMKMV-------------- 253
V V+ M +++++ +V
Sbjct: 165 VSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQTQAI 224
Query: 254 ---KLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLADGCRHVPYRDSKL 310
KLS +DLAGSER + S + KE +INKSL ALG+ I++L+ G +H+PYR+ KL
Sbjct: 225 ARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGNQHIPYRNHKL 284
Query: 311 TRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKIKAKVSRTFKSGAHFKLE 370
T ++ DSLGGN KT+M NI+P + ++++N+L YA+R + I S+ S +L+
Sbjct: 285 TMLMSDSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRSIVNDPSKNVSSKEVARLK 344
Query: 371 YLTGGVSKHCRPAVGRRG 388
L + + GR+G
Sbjct: 345 KLVS----YWKEQAGRKG 358
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
Length = 349
Score = 134 bits (336), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 104/354 (29%), Positives = 167/354 (47%), Gaps = 92/354 (25%)
Query: 68 GEQSHMKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDIN 127
E+ + V +RVRP + +EE V + +I+ ++
Sbjct: 1 AEEGAVAVCVRVRPLNSREESLGETAQVYWKTDNNVIYQ-------------------VD 41
Query: 128 KKKSKEMEFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLG 187
KS F FDRV+ +E+ ++VY+ II S ++GYN ++F YG T +GKT+TM+G
Sbjct: 42 GSKS----FNFDRVFHGNETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMG 97
Query: 188 NENH-----KGIMYLTMGIRN--------RVS-------ALTRQMCTMRMYKTCLI---L 224
+E+H + I + I+ RVS +T +C + K +I +
Sbjct: 98 SEDHLGVIPRAIHDIFQKIKKFPDREFLLRVSYMEIYNETITDLLCGTQKMKPLIIREDV 157
Query: 225 RRKPSICEKMQLMVYV--------------------KMQDKATKQ--------------- 249
R + + + +VY KM ++++
Sbjct: 158 NRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGE 217
Query: 250 -------MKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLADG--C 300
+K+ L+++DLAGSERAA + +R KEG NIN+SL LG I L+DG
Sbjct: 218 PSNCEGSVKVSHLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVG 277
Query: 301 RHVPYRDSKLTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKIK 354
+ YRDSKLTRIL++SLGGN KT +I I P +S++++ L++A+ AK +K
Sbjct: 278 GFINYRDSKLTRILQNSLGGNAKTRIICTITP--VSFDETLTALQFASTAKYMK 329
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 130 bits (327), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 101/342 (29%), Positives = 162/342 (47%), Gaps = 77/342 (22%)
Query: 73 MKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKSK 132
+KV +R RP S+ E+ +I+ + N T+ D + + V + K +
Sbjct: 2 IKVVVRKRPLSELEKKKKDSDIITVKNNCTLYIDEPR-------YKVDMT------KYIE 48
Query: 133 EMEFLFDRVYGPSESNQDVYDGSTKDIIASLLE-GYNCSVFVYGATGAGKTHTMLGN--- 188
EF+ D+V+ + N VY+ + K +I L E G CS F YG TG+GKT+TMLG+
Sbjct: 49 RHEFIVDKVFDDTVDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGSQPY 108
Query: 189 -------------------------ENHKGI-----------MYLTMGIRNRVSAL---- 208
+N KGI +Y + R V+AL
Sbjct: 109 GQSDTPGIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQKRKMVAALENGK 168
Query: 209 --------------TRQMCTMRMYKTCLI----LRRKPSICEKMQLMVYVKMQDKATKQM 250
T++ ++M L+ + + + ++ + ++D K
Sbjct: 169 KEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKD-INKNT 227
Query: 251 KMVKLSMIDLAGSERAAAN-SSNQMRFKEGSNINKSLLALGNCINSLADGCRHVPYRDSK 309
+ K++ IDLAGSER A S N+ +G+NIN+SLLAL CI ++ H+P+RDS+
Sbjct: 228 SLGKIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDKNHIPFRDSE 287
Query: 310 LTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAK 351
LT++L+D G K++MIANI+PT E + NTL+Y++R K
Sbjct: 288 LTKVLRDIFVGKSKSIMIANISPTISCCEQTLNTLRYSSRVK 329
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppcp
Length = 366
Score = 129 bits (325), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 105/373 (28%), Positives = 167/373 (44%), Gaps = 106/373 (28%)
Query: 73 MKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKSK 132
+KV +RVRP + +E + I+++ T I +PKQ K
Sbjct: 6 VKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQ-------------------PKET 46
Query: 133 EMEFLFDRVYGPSESNQDVYDGSTK--------DIIASLLEGYNCSVFVYGATGAGKTHT 184
F FD Y S +D+ S K +++ EGYN +F YG TGAGK++T
Sbjct: 47 PKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYT 106
Query: 185 MLGNE--NHKGIM-YLTMGIRNRVSALTR-------QMCTMRMY------------KTCL 222
M+G + + +GI+ L + +R++ T ++ M +Y K L
Sbjct: 107 MMGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNL 166
Query: 223 ILRRKPSI------CEKMQLMVYVKMQD-------------------------------- 244
+R P + K+ + Y +QD
Sbjct: 167 RVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFT 226
Query: 245 ----KATKQMKMVKLS---MIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLA 297
A + K+S ++DLAGSERA + + R KEG+NINKSL LG I++LA
Sbjct: 227 QKRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALA 286
Query: 298 D------------GCRHVPYRDSKLTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLK 345
+ +PYRDS LT +L+++LGGN +T M+A ++P ++Y+++ +TL+
Sbjct: 287 EMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLR 346
Query: 346 YATRAKKIKAKVS 358
YA RAK+I+ VS
Sbjct: 347 YADRAKQIRNTVS 359
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
Release
Length = 366
Score = 129 bits (324), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 105/373 (28%), Positives = 167/373 (44%), Gaps = 106/373 (28%)
Query: 73 MKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKSK 132
+KV +RVRP + +E + I+++ T I +PKQ K
Sbjct: 6 VKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQ-------------------PKET 46
Query: 133 EMEFLFDRVYGPSESNQDVYDGSTK--------DIIASLLEGYNCSVFVYGATGAGKTHT 184
F FD Y S +D+ S K +++ EGYN +F YG TGAGK++T
Sbjct: 47 PKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYT 106
Query: 185 MLGNE--NHKGIM-YLTMGIRNRVSALTR-------QMCTMRMY------------KTCL 222
M+G + + +GI+ L + +R++ T ++ M +Y K L
Sbjct: 107 MMGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNL 166
Query: 223 ILRRKPSI------CEKMQLMVYVKMQD-------------------------------- 244
+R P + K+ + Y +QD
Sbjct: 167 RVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFT 226
Query: 245 ----KATKQMKMVKLS---MIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLA 297
A + K+S ++DLAGSERA + + R KEG+NINKSL LG I++LA
Sbjct: 227 QKRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALA 286
Query: 298 D------------GCRHVPYRDSKLTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLK 345
+ +PYRDS LT +L+++LGGN +T M+A ++P ++Y+++ +TL+
Sbjct: 287 EMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLR 346
Query: 346 YATRAKKIKAKVS 358
YA RAK+I+ VS
Sbjct: 347 YADRAKQIRNTVS 359
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 128 bits (321), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 106/375 (28%), Positives = 166/375 (44%), Gaps = 106/375 (28%)
Query: 71 SHMKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKK 130
+ +KV +RVRP + +E + I+++ T I +PKQ K
Sbjct: 20 ASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQ-------------------PK 60
Query: 131 SKEMEFLFDRVYGPSESNQDVYDGSTKDIIASL--------LEGYNCSVFVYGATGAGKT 182
F FD Y S +D+ S K + + EGYN +F YG TGAGK+
Sbjct: 61 ETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKS 120
Query: 183 HTMLGNE--NHKGIM-YLTMGIRNRVSALTR-------QMCTMRMY------------KT 220
+TM+G + + +GI+ L + +R++ T ++ M +Y K
Sbjct: 121 YTMMGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKG 180
Query: 221 CLILRRKPSI------CEKMQLMVYVKMQD------------------------------ 244
L +R P + K+ + Y +QD
Sbjct: 181 NLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNII 240
Query: 245 ------KATKQMKMVKLSMI---DLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINS 295
A + K+S I DLAGSERA + + R KEG+NINKSL LG I++
Sbjct: 241 FTQKRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISA 300
Query: 296 LAD------------GCRHVPYRDSKLTRILKDSLGGNCKTVMIANIAPTALSYEDSYNT 343
LA+ +PYRDS LT +L+++LGGN +T M+A ++P ++Y+++ +T
Sbjct: 301 LAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLST 360
Query: 344 LKYATRAKKIKAKVS 358
L+YA RAK+I+ VS
Sbjct: 361 LRYADRAKQIRNTVS 375
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 128 bits (321), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 106/375 (28%), Positives = 166/375 (44%), Gaps = 106/375 (28%)
Query: 71 SHMKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKK 130
+ +KV +RVRP + +E + I+++ T I +PKQ K
Sbjct: 4 ASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQ-------------------PK 44
Query: 131 SKEMEFLFDRVYGPSESNQDVYDGSTKDIIASL--------LEGYNCSVFVYGATGAGKT 182
F FD Y S +D+ S K + + EGYN +F YG TGAGK+
Sbjct: 45 ETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKS 104
Query: 183 HTMLGNE--NHKGIM-YLTMGIRNRVSALTR-------QMCTMRMY------------KT 220
+TM+G + + +GI+ L + +R++ T ++ M +Y K
Sbjct: 105 YTMMGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKG 164
Query: 221 CLILRRKPSI------CEKMQLMVYVKMQD------------------------------ 244
L +R P + K+ + Y +QD
Sbjct: 165 NLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNII 224
Query: 245 ------KATKQMKMVKLSMI---DLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINS 295
A + K+S I DLAGSERA + + R KEG+NINKSL LG I++
Sbjct: 225 FTQKRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISA 284
Query: 296 LAD------------GCRHVPYRDSKLTRILKDSLGGNCKTVMIANIAPTALSYEDSYNT 343
LA+ +PYRDS LT +L+++LGGN +T M+A ++P ++Y+++ +T
Sbjct: 285 LAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLST 344
Query: 344 LKYATRAKKIKAKVS 358
L+YA RAK+I+ VS
Sbjct: 345 LRYADRAKQIRNTVS 359
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 125 bits (314), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 60/109 (55%), Positives = 80/109 (73%), Gaps = 1/109 (0%)
Query: 249 QMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLADG-CRHVPYRD 307
+++ KL+++DLAGSER A + R KE + IN SL ALGN I++L DG H+PYRD
Sbjct: 248 HIRVGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHIPYRD 307
Query: 308 SKLTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKIKAK 356
SKLTR+L+DSLGGN KTVM+AN+ P + + E++ TL+YA RAK IK K
Sbjct: 308 SKLTRLLQDSLGGNAKTVMVANVGPASYNVEETLTTLRYANRAKNIKNK 356
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 60/122 (49%), Gaps = 20/122 (16%)
Query: 68 GEQSHMKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDIN 127
G ++V +R RP + KE+ + ++V + D + VK
Sbjct: 18 GSSESVRVVVRCRPMNGKEKAASYDKVVDV-------------DVKLGQVSVKNP----- 59
Query: 128 KKKSKEME--FLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTM 185
K + EM F FD VY + ++YD + + ++ S+L+G+N ++F YG TG GKT+TM
Sbjct: 60 KGTAHEMPKTFTFDAVYDWNAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTM 119
Query: 186 LG 187
G
Sbjct: 120 EG 121
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 119 bits (298), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 59/114 (51%), Positives = 78/114 (68%), Gaps = 3/114 (2%)
Query: 241 KMQDKATKQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLADGC 300
++ A Q+ + K +DLAGSER S R KE IN SLLALGN I++L D
Sbjct: 231 RLPRPAPGQLLVSKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQ 290
Query: 301 R---HVPYRDSKLTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAK 351
R H+PYRDSK+TRILKDSLGGN KTVMIA ++P++ ++++ NTL YA+RA+
Sbjct: 291 RRGSHIPYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 65/158 (41%), Gaps = 31/158 (19%)
Query: 69 EQSHMKVYIRVRPQSQKEEDGCHREIVKI---LNRDTIIFDPKQDDSEFFFHGVKQSLRD 125
E++ ++V +RVRP KE H+ +++ L R T+
Sbjct: 9 EEAPVRVALRVRPLLPKELLHGHQSCLQVEPGLGRVTL---------------------- 46
Query: 126 INKKKSKEMEFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTM 185
++ F F V + VY + ++ + EG+N +VF YG TG+GKT+TM
Sbjct: 47 -----GRDRHFGFHVVLAEDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTM 101
Query: 186 LGNENHKGIMYLTMGIRNRVSALTRQMCTMRMYKTCLI 223
G + ++ GI R A ++ CL+
Sbjct: 102 -GEASVASLLEDEQGIVPRAMAEAFKLIDENDLLDCLV 138
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 113 bits (283), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 77/112 (68%), Gaps = 6/112 (5%)
Query: 246 ATKQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLADGC----- 300
T K+ KLS++DLAGSERA + R KEGSNINKSL LG I++LAD
Sbjct: 237 GTSGEKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKNK 296
Query: 301 -RHVPYRDSKLTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAK 351
+ VPYRDS LT +LKDSLGGN KT M+A ++P A +Y+++ +TL+YA RAK
Sbjct: 297 NKFVPYRDSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRYADRAK 348
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 69/133 (51%), Gaps = 21/133 (15%)
Query: 71 SHMKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKK 130
S +KV +R+RP +++E D H + V ++ + +I +P V +L + +
Sbjct: 1 SKVKVAVRIRPMNRRETD-LHTKCVVDVDANKVILNP-----------VNTNLSKGDARG 48
Query: 131 SKEMEFLFDRVYGP-SESNQDVYDGST-------KDIIASLLEGYNCSVFVYGATGAGKT 182
++ F +D + ES ++ Y G ++I+ + +GYN +F YG TG+GK+
Sbjct: 49 QPKV-FAYDHCFWSMDESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKS 107
Query: 183 HTMLGNENHKGIM 195
+TM+G + G++
Sbjct: 108 YTMMGTADQPGLI 120
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 112 bits (279), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 55/122 (45%), Positives = 82/122 (67%)
Query: 236 LMVYVKMQDKATKQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINS 295
++ VK ++ T+Q KL ++DLAGSE+ + + E NINKSL ALGN I++
Sbjct: 208 FLINVKQENTQTEQKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISA 267
Query: 296 LADGCRHVPYRDSKLTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKIKA 355
LA+G +VPYRDSK+TRIL+DSLGGNC+T ++ +P++ + ++ +TL + RAK IK
Sbjct: 268 LAEGSTYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTIKN 327
Query: 356 KV 357
V
Sbjct: 328 TV 329
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 55/118 (46%), Gaps = 26/118 (22%)
Query: 70 QSHMKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKK 129
+ ++KV R RP ++ E + + I K DT++ K
Sbjct: 6 ECNIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVIASKP-------------------- 45
Query: 130 KSKEMEFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLG 187
+ FDRV+ S S + VY+ K I+ +LEGYN ++F YG T +GKTHTM G
Sbjct: 46 ------YAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEG 97
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 112 bits (279), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 55/122 (45%), Positives = 82/122 (67%)
Query: 236 LMVYVKMQDKATKQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINS 295
++ VK ++ T+Q KL ++DLAGSE+ + + E NINKSL ALGN I++
Sbjct: 208 FLINVKQENTQTEQKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISA 267
Query: 296 LADGCRHVPYRDSKLTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKIKA 355
LA+G +VPYRDSK+TRIL+DSLGGNC+T ++ +P++ + ++ +TL + RAK IK
Sbjct: 268 LAEGSTYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTIKN 327
Query: 356 KV 357
V
Sbjct: 328 TV 329
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 54/118 (45%), Gaps = 26/118 (22%)
Query: 70 QSHMKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKK 129
+ ++KV R RP ++ E + + + K DT++ K
Sbjct: 6 ECNIKVMCRFRPLNESEVNRGDKYVAKFQGEDTVMIASKP-------------------- 45
Query: 130 KSKEMEFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLG 187
+ FDRV+ S S + VY+ K I+ +LEGYN ++F YG T +GK HTM G
Sbjct: 46 ------YAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKNHTMEG 97
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 111 bits (278), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 77/114 (67%), Gaps = 3/114 (2%)
Query: 241 KMQDKATKQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLADGC 300
++ A Q+ + K +DLAGSER S KE IN SLLALGN I++L D
Sbjct: 231 RLPRPAPGQLLVSKFHFVDLAGSERVLKTGSTGELRKESIQINSSLLALGNVISALGDPQ 290
Query: 301 R---HVPYRDSKLTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAK 351
R ++PYRDSK+TRILKDSLGGN KTVMIA ++P++ ++++ NTL YA+RA+
Sbjct: 291 RRGSNIPYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 65/158 (41%), Gaps = 31/158 (19%)
Query: 69 EQSHMKVYIRVRPQSQKEEDGCHREIVKI---LNRDTIIFDPKQDDSEFFFHGVKQSLRD 125
E++ ++V +RVRP KE H+ +++ L R T+
Sbjct: 9 EEAPVRVALRVRPLLPKELLHGHQSCLQVEPGLGRVTL---------------------- 46
Query: 126 INKKKSKEMEFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTM 185
++ F F V + VY + ++ + EG+N +VF YG TG+GKT+TM
Sbjct: 47 -----GRDRHFGFHVVLAEDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTM 101
Query: 186 LGNENHKGIMYLTMGIRNRVSALTRQMCTMRMYKTCLI 223
G + ++ GI R A ++ CL+
Sbjct: 102 -GEASVASLLEDEQGIVPRAMAEAFKLIDENDLLDCLV 138
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/104 (50%), Positives = 75/104 (72%)
Query: 250 MKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLADGCRHVPYRDSK 309
+K+ KL+++DLAGSE + + R +E NIN+SLL LG I +L + HVPYR+SK
Sbjct: 256 VKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESK 315
Query: 310 LTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKI 353
LTRIL+DSLGG +T +IA I+P +L+ E++ +TL+YA RAK I
Sbjct: 316 LTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 359
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 52/116 (44%), Gaps = 16/116 (13%)
Query: 72 HMKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKS 131
+++V +RVRP + E IV+ DP + + G+ KS
Sbjct: 18 NIQVVVRVRPFNLAERKASAHSIVE--------SDPVRKEVSVRTGGLAD--------KS 61
Query: 132 KEMEFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLG 187
+ FD V+G S DVY I+ ++ GYN ++F YG TG GKT TM G
Sbjct: 62 SRKTYTFDMVFGASTKQIDVYRSVVAPILDEVIMGYNATIFAYGQTGTGKTFTMEG 117
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 80/118 (67%)
Query: 236 LMVYVKMQDKATKQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINS 295
++ VK ++ T+Q KL ++DLAGSE+ + + E NINKSL ALGN I++
Sbjct: 208 FLINVKQENTQTEQKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISA 267
Query: 296 LADGCRHVPYRDSKLTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKI 353
LA+G +VPYRDSK+TRIL+DSLGGNC+T ++ +P++ + ++ +TL + RAK I
Sbjct: 268 LAEGSTYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTI 325
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 55/118 (46%), Gaps = 26/118 (22%)
Query: 70 QSHMKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKK 129
+ ++KV R RP ++ E + + I K DT++ K
Sbjct: 6 ECNIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVIASKP-------------------- 45
Query: 130 KSKEMEFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLG 187
+ FDRV+ S S + VY+ K I+ +LEGYN ++F YG T +GKTHTM G
Sbjct: 46 ------YAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEG 97
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/104 (50%), Positives = 75/104 (72%)
Query: 250 MKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLADGCRHVPYRDSK 309
+K+ KL+++DLAGSE + + R +E NIN+SLL LG I +L + HVPYR+SK
Sbjct: 247 VKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESK 306
Query: 310 LTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKI 353
LTRIL+DSLGG +T +IA I+P +L+ E++ +TL+YA RAK I
Sbjct: 307 LTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 350
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 52/116 (44%), Gaps = 16/116 (13%)
Query: 72 HMKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKS 131
+++V +R RP + E IV+ DP + + G+ KS
Sbjct: 9 NIQVVVRCRPFNLAERKASAHSIVEC--------DPVRKEVSVRTGGLAD--------KS 52
Query: 132 KEMEFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLG 187
+ FD V+G S DVY I+ ++ GYNC++F YG TG GKT TM G
Sbjct: 53 SRKTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEG 108
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/104 (50%), Positives = 75/104 (72%)
Query: 250 MKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLADGCRHVPYRDSK 309
+K+ KL+++DLAGSE + + R +E NIN+SLL LG I +L + HVPYR+SK
Sbjct: 255 VKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESK 314
Query: 310 LTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKI 353
LTRIL+DSLGG +T +IA I+P +L+ E++ +TL+YA RAK I
Sbjct: 315 LTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 358
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 52/116 (44%), Gaps = 16/116 (13%)
Query: 72 HMKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKS 131
+++V +R RP + E IV+ DP + + G+ KS
Sbjct: 17 NIQVVVRCRPFNLAERKASAHSIVEC--------DPVRKEVSVRTGGLAD--------KS 60
Query: 132 KEMEFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLG 187
+ FD V+G S DVY I+ ++ GYNC++F YG TG GKT TM G
Sbjct: 61 SRKTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEG 116
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/104 (50%), Positives = 75/104 (72%)
Query: 250 MKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLADGCRHVPYRDSK 309
+K+ KL+++DLAGSE + + R +E NIN+SLL LG I +L + HVPYR+SK
Sbjct: 256 VKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESK 315
Query: 310 LTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKI 353
LTRIL+DSLGG +T +IA I+P +L+ E++ +TL+YA RAK I
Sbjct: 316 LTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 359
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 52/116 (44%), Gaps = 16/116 (13%)
Query: 72 HMKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKS 131
+++V +R RP + E IV+ DP + + G+ KS
Sbjct: 18 NIQVVVRCRPFNLAERKASAHSIVEC--------DPVRKEVSVRTGGLAD--------KS 61
Query: 132 KEMEFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLG 187
+ FD V+G S DVY I+ ++ GYNC++F YG TG GKT TM G
Sbjct: 62 SRKTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEG 117
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/104 (50%), Positives = 75/104 (72%)
Query: 250 MKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLADGCRHVPYRDSK 309
+K+ KL+++DLAGSE + + R +E NIN+SLL LG I +L + HVPYR+SK
Sbjct: 256 VKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESK 315
Query: 310 LTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKI 353
LTRIL+DSLGG +T +IA I+P +L+ E++ +TL+YA RAK I
Sbjct: 316 LTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 359
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 52/116 (44%), Gaps = 16/116 (13%)
Query: 72 HMKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKS 131
+++V +R RP + E IV+ DP + + G+ KS
Sbjct: 18 NIQVVVRCRPFNLAERKASAHSIVEC--------DPVRKEVSVRTGGLAD--------KS 61
Query: 132 KEMEFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLG 187
+ FD V+G S DVY I+ ++ GYNC++F YG TG GKT TM G
Sbjct: 62 SRKTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEG 117
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/104 (50%), Positives = 75/104 (72%)
Query: 250 MKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLADGCRHVPYRDSK 309
+K+ KL+++DLAGSE + + R +E NIN+SLL LG I +L + HVPYR+SK
Sbjct: 258 VKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESK 317
Query: 310 LTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKI 353
LTRIL+DSLGG +T +IA I+P +L+ E++ +TL+YA RAK I
Sbjct: 318 LTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 361
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 52/116 (44%), Gaps = 16/116 (13%)
Query: 72 HMKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKS 131
+++V +R RP + E IV+ DP + + G+ KS
Sbjct: 20 NIQVVVRCRPFNLAERKASAHSIVEC--------DPVRKEVSVRTGGLAD--------KS 63
Query: 132 KEMEFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLG 187
+ FD V+G S DVY I+ ++ GYNC++F YG TG GKT TM G
Sbjct: 64 SRKTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEG 119
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/104 (50%), Positives = 75/104 (72%)
Query: 250 MKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLADGCRHVPYRDSK 309
+K+ KL+++DLAGSE + + R +E NIN+SLL LG I +L + HVPYR+SK
Sbjct: 256 VKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESK 315
Query: 310 LTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKI 353
LTRIL+DSLGG +T +IA I+P +L+ E++ +TL+YA RAK I
Sbjct: 316 LTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 359
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 52/116 (44%), Gaps = 16/116 (13%)
Query: 72 HMKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKS 131
+++V +R RP + E IV+ DP + + G+ KS
Sbjct: 18 NIQVVVRCRPFNLAERKASAHSIVEC--------DPVRKEVSVRTGGLAD--------KS 61
Query: 132 KEMEFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLG 187
+ FD V+G S DVY I+ ++ GYNC++F YG TG GKT TM G
Sbjct: 62 SRKTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEG 117
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/104 (50%), Positives = 75/104 (72%)
Query: 250 MKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLADGCRHVPYRDSK 309
+K+ KL+++DLAGSE + + R +E NIN+SLL LG I +L + HVPYR+SK
Sbjct: 256 VKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESK 315
Query: 310 LTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKI 353
LTRIL+DSLGG +T +IA I+P +L+ E++ +TL+YA RAK I
Sbjct: 316 LTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 359
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 52/116 (44%), Gaps = 16/116 (13%)
Query: 72 HMKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKS 131
+++V +R RP + E IV+ DP + + G+ KS
Sbjct: 18 NIQVVVRCRPFNLAERKASAHSIVEC--------DPVRKEVSVRTGGLAD--------KS 61
Query: 132 KEMEFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLG 187
+ FD V+G S DVY I+ ++ GYNC++F YG TG GKT TM G
Sbjct: 62 SRKTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEG 117
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 109 bits (273), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 54/107 (50%), Positives = 76/107 (71%)
Query: 250 MKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLADGCRHVPYRDSK 309
+K+ KL+++DLAGSE + + R +E NIN+SLL LG I +L + HVPYR+SK
Sbjct: 241 VKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESK 300
Query: 310 LTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKIKAK 356
LTRIL+DSLGG +T +IA I+P +L+ E++ +TL+YA RAK I K
Sbjct: 301 LTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNK 347
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 62/134 (46%), Positives = 83/134 (61%), Gaps = 27/134 (20%)
Query: 249 QMKMVKLSMIDLAGSER---AAANSSNQM---------------------RFKEGSNINK 284
+++ KL+++DLAGSER A N++ R KE S IN
Sbjct: 248 HIRVGKLNLVDLAGSERQNKAGPNTAGGAATPSSGGGGGGGGSGGGAGGERPKEASKINL 307
Query: 285 SLLALGNCINSLADGCR--HVPYRDSKLTRILKDSLGGNCKTVMIANIAPTALSYEDSYN 342
SL ALGN I +LA G R H+PYRDSKLTR+L+DSLGGN KT+M+A + P + SY++S +
Sbjct: 308 SLSALGNVIAALA-GNRSTHIPYRDSKLTRLLQDSLGGNAKTIMVATLGPASHSYDESLS 366
Query: 343 TLKYATRAKKIKAK 356
TL++A RAK IK K
Sbjct: 367 TLRFANRAKNIKNK 380
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 58/122 (47%), Gaps = 20/122 (16%)
Query: 68 GEQSHMKVYIRVRPQSQKEEDGCHREIVKILNR--DTIIFDPKQDDSEFFFHGVKQSLRD 125
G +KV R RP S+KEE H +I+ + + + +P+ E
Sbjct: 18 GASEALKVVARCRPLSRKEEAAGHEQILTMDVKLGQVTLRNPRAAPGEL----------- 66
Query: 126 INKKKSKEMEFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTM 185
F FD VY S D+YD + + +I S+L+G+N +VF YG TG GKT+TM
Sbjct: 67 -------PKTFTFDAVYDASSKQADLYDETVRPLIDSVLQGFNGTVFAYGQTGTGKTYTM 119
Query: 186 LG 187
G
Sbjct: 120 QG 121
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 54/108 (50%), Positives = 76/108 (70%), Gaps = 1/108 (0%)
Query: 250 MKMVKLSMIDLAGSERAA-ANSSNQMRFKEGSNINKSLLALGNCINSLADGCRHVPYRDS 308
+K+ KL+++DLAGSE + A + +R +E NIN+SLL LG I +L D HVPYR+S
Sbjct: 257 LKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVDRAPHVPYRES 316
Query: 309 KLTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKIKAK 356
KLTR+L++SLGG KT +IA I+P E++ +TL+YA RAK I+ K
Sbjct: 317 KLTRLLQESLGGRTKTSIIATISPGHKDIEETLSTLEYAHRAKNIQNK 364
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 64/120 (53%), Gaps = 23/120 (19%)
Query: 72 HMKVYIRVRPQSQKEEDGCHR--EIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKK 129
+++VY+RVRP + +E C R E+V ++ ++ + ++ K
Sbjct: 24 NIQVYVRVRPLNSRER--CIRSAEVVDVVGPREVV-----------------TRHTLDSK 64
Query: 130 KSKEMEFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGNE 189
+K+ F FDR +GP DVY +I +L GYNC+VF YG TG GKTHTM+GNE
Sbjct: 65 LTKK--FTFDRSFGPESKQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMVGNE 122
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 104 bits (260), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 79/122 (64%), Gaps = 1/122 (0%)
Query: 236 LMVYVKMQDKATKQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINS 295
++ + ++ T K +L ++DLAGSE+ ++ +E INKSL ALG IN+
Sbjct: 212 FVITITQKNVETGSAKSGQLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINA 271
Query: 296 LADG-CRHVPYRDSKLTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKIK 354
L DG HVPYRDSKLTRIL++SLGGN +T +I N +P++ + ++ +TL++ RAK IK
Sbjct: 272 LTDGKSSHVPYRDSKLTRILQESLGGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIK 331
Query: 355 AK 356
K
Sbjct: 332 NK 333
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 55/115 (47%), Gaps = 22/115 (19%)
Query: 73 MKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKSK 132
+KV R RPQ++ E + + IV DT D K+
Sbjct: 8 IKVVARFRPQNRVEIESGGQPIVTFQGPDTCTVDSKE----------------------A 45
Query: 133 EMEFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLG 187
+ F FDRV+ S D++D S K + +L GYN +VF YG TGAGK++TM+G
Sbjct: 46 QGSFTFDRVFDMSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMG 100
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 79/120 (65%), Gaps = 1/120 (0%)
Query: 236 LMVYVKMQDKATKQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINS 295
++ VK ++ ++ KL ++DLAGSE+ + + E NINKSL ALGN I++
Sbjct: 215 FLINVKQENLENQKKLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISA 274
Query: 296 LADGCR-HVPYRDSKLTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKIK 354
LADG + H+PYRDSKLTRIL++SLGGN +T ++ +P + + ++ +TL + RAK +K
Sbjct: 275 LADGNKTHIPYRDSKLTRILQESLGGNARTTIVICCSPASFNESETKSTLDFGRRAKTVK 334
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 23/118 (19%)
Query: 70 QSHMKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKK 129
+ +KV R RP + EE + +VK F + V+++ I K
Sbjct: 10 EDSIKVVCRFRPLNDSEEKAGSKFVVK------------------FPNNVEENCISIAGK 51
Query: 130 KSKEMEFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLG 187
+LFD+V+ P+ S + VY+ + K I+ +L GYN ++F YG T +GKTHTM G
Sbjct: 52 V-----YLFDKVFKPNASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEG 104
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 99/349 (28%), Positives = 157/349 (44%), Gaps = 91/349 (26%)
Query: 75 VYIRVRPQSQKEEDGCHREIVKILNRDTI-IFDPKQ--DDSEFFFHGVKQSLRDINKKKS 131
V +R RP ++KE +++ I ++D + + +PKQ D + +
Sbjct: 93 VCVRKRPLNKKETQMKDLDVITIPSKDVVMVHEPKQKVDLTRYL---------------- 136
Query: 132 KEMEFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGN--- 188
+ F FD + S N+ VY + + ++ ++ E + F YG TG+GKTHTM G+
Sbjct: 137 ENQTFRFDYAFDDSAPNEMVYRFTARPLVETIFERGMATCFAYGQTGSGKTHTMGGDFSG 196
Query: 189 ---ENHKGIMYLTMGIRNRVSALTR---QMCTMRMYKTCL---------ILRRKPS--IC 231
+ KGI L R+ L + + +++Y T +L RK +
Sbjct: 197 KNQDCSKGIYAL--AARDVFLMLKKPNYKKLELQVYATFFEIYSGKVFDLLNRKTKLRVL 254
Query: 232 E--KMQLMVYVKMQDKATKQMKMVKLSMIDLAGSERAAANSS------------------ 271
E K Q+ V V +Q++ K ++ V L +ID+ S R + +S
Sbjct: 255 EDGKQQVQV-VGLQEREVKCVEDV-LKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRR 312
Query: 272 --------------------------NQMRFKEGSNINKSLLALGNCINSLADGCRHVPY 305
Q R EG+ INKSLLAL CI +L H P+
Sbjct: 313 KGKLHGKFSLIDLAGNERGADTSSADRQTRL-EGAEINKSLLALKECIRALGRNKPHTPF 371
Query: 306 RDSKLTRILKDS-LGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKI 353
R SKLT++L+DS +G N +T MIA I+P S E++ NTL+YA R K++
Sbjct: 372 RASKLTQVLRDSFIGENSRTCMIATISPGMASCENTLNTLRYANRVKEL 420
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 101 bits (252), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 81/293 (27%), Positives = 132/293 (45%), Gaps = 76/293 (25%)
Query: 135 EFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGNE----- 189
+F FDRV+ P +V++ ++ S L+GY +F YG TG+GKT TM G
Sbjct: 84 DFSFDRVFPPGSGQDEVFE-EIAMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDPQ 142
Query: 190 -------------------NHKGIMYLTMG---------IRNRVSALTRQ----MCTMRM 217
+ +G Y + +R+ ++ TR+ C +R
Sbjct: 143 LEGLIPRALRHLFSVAQELSGQGWTYSFVASYVEIYNETVRDLLATGTRKGQGGECEIRR 202
Query: 218 YK------TCLILRRKPSICEK-MQLMVYVKMQDKATK---------------QMKM--- 252
T R P CEK + ++++ Q++A Q+++
Sbjct: 203 AGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERSSRSHSVFQLQISGE 262
Query: 253 ---------VKLSMIDLAGSERA----AANSSNQMRFKEGSNINKSLLALGNCINSLADG 299
LS++DLAGSER A + R +E IN SL LG I +L++
Sbjct: 263 HSSRGLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVIMALSNK 322
Query: 300 CRHVPYRDSKLTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKK 352
HVPYR+SKLT +L++SLGG+ K +M NI+P + +S N+L++A++ +
Sbjct: 323 ESHVPYRNSKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASKVNQ 375
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 101 bits (251), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 59/136 (43%), Positives = 79/136 (58%), Gaps = 26/136 (19%)
Query: 244 DKATKQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLAD----- 298
D T++ ++L +DLAGSERA + + R +EGSNINKSL LG I +LAD
Sbjct: 286 DDTTERSSRIRL--VDLAGSERAKSTEATGQRLREGSNINKSLTTLGRVIAALADPKSSA 343
Query: 299 -----------------GCRHVPYRDSKLTRILKDSLGGNCKTVMIANIAPTALSYEDSY 341
VPYRDS LT +LKDSLGGN KT MIA I+PT Y+++
Sbjct: 344 SRPSSPVKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACISPT--DYDETL 401
Query: 342 NTLKYATRAKKIKAKV 357
+TL+YA +AK+I+ +
Sbjct: 402 STLRYADQAKRIRTRA 417
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 9/75 (12%)
Query: 132 KEMEFLFDRVYGPSESNQD--------VYDGSTKDIIASLLEGYNCSVFVYGATGAGKTH 183
+E F FD+ + S + +D VYD ++ + EGY+ +F YG TG+GK++
Sbjct: 94 EEKSFTFDKSFW-SHNTEDEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSY 152
Query: 184 TMLGNENHKGIMYLT 198
TM+G + G++ T
Sbjct: 153 TMMGTPDQPGLIPRT 167
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 95.5 bits (236), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 70/102 (68%), Gaps = 2/102 (1%)
Query: 254 KLSMIDLAGSERAAANSSNQMRFK-EGSNINKSLLALGNCINSLADGCRHVPYRDSKLTR 312
K S++DLAG+ER A SS + + EG+ INKSLLAL CI +L H P+R+SKLT+
Sbjct: 281 KFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQ 340
Query: 313 ILKDS-LGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKI 353
+L+DS +G N +T MIA I+P S E + NTL+YA R K++
Sbjct: 341 VLRDSFIGENSRTCMIATISPGISSCEYTLNTLRYADRVKEL 382
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%)
Query: 136 FLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGNENHKG 193
F FD + + SN+ VY + + ++ ++ EG + F YG TG+GKTHTM G+ + K
Sbjct: 103 FCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKA 160
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 94.7 bits (234), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 70/102 (68%), Gaps = 2/102 (1%)
Query: 254 KLSMIDLAGSERAAANSSNQMRFK-EGSNINKSLLALGNCINSLADGCRHVPYRDSKLTR 312
K S++DLAG+ER A SS + + EG+ INKSLLAL CI +L H P+R+SKLT+
Sbjct: 301 KFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQ 360
Query: 313 ILKDS-LGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKI 353
+L+DS +G N +T MIA I+P S E + NTL+YA R K++
Sbjct: 361 VLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKEL 402
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 33/53 (62%)
Query: 136 FLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGN 188
F FD + + SN+ VY + + ++ ++ EG + F YG TG+GKTHTM G+
Sbjct: 123 FCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGD 175
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 70/102 (68%), Gaps = 2/102 (1%)
Query: 254 KLSMIDLAGSERAAANSSNQMRFK-EGSNINKSLLALGNCINSLADGCRHVPYRDSKLTR 312
K S++DLAG+ER A SS + + EG+ INKSLLAL CI +L H P+R+SKLT+
Sbjct: 229 KFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQ 288
Query: 313 ILKDS-LGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKI 353
+L+DS +G N +T MIA I+P S E + NTL+YA R K++
Sbjct: 289 VLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKEL 330
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 33/53 (62%)
Query: 136 FLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGN 188
F FD + + SN+ VY + + ++ ++ EG + F YG TG+GKTHTM G+
Sbjct: 51 FCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGD 103
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 76/119 (63%)
Query: 236 LMVYVKMQDKATKQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINS 295
L+V V+ D +T KL+++DLAGSER + + R +E +INKSL ALG+ I +
Sbjct: 211 LIVTVRGVDCSTGLRTTGKLNLVDLAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAA 270
Query: 296 LADGCRHVPYRDSKLTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKIK 354
L HVP+R+SKLT +L+DSL G+ KT+M+ ++P + ++ +LK+A R + ++
Sbjct: 271 LRSRQGHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVRSVE 329
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 62/127 (48%), Gaps = 20/127 (15%)
Query: 68 GEQSHMKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDIN 127
G + +++V RVRP ++ EDG E + + FD D H
Sbjct: 1 GSKGNIRVIARVRPVTK--EDGEGPEAT-----NAVTFDADDDSIIHLLH---------- 43
Query: 128 KKKSKEMEFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLG 187
K K + F D+V+ P S QDV+ + ++ S ++G+N +F YG TGAGKT+TM G
Sbjct: 44 --KGKPVSFELDKVFSPQASQQDVFQ-EVQALVTSCIDGFNVCIFAYGQTGAGKTYTMEG 100
Query: 188 NENHKGI 194
+ GI
Sbjct: 101 TAENPGI 107
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 92.0 bits (227), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 52/105 (49%), Positives = 69/105 (65%), Gaps = 3/105 (2%)
Query: 247 TKQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSL--ADGCRHVP 304
TK+ L++IDLAGSER + + R KE INKSL LG+ I+SL DG HVP
Sbjct: 604 TKESSYGTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNLKDGS-HVP 662
Query: 305 YRDSKLTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATR 349
YR+SKLT +LK SLGGN KT+M NI+P ++ N+L++AT+
Sbjct: 663 YRNSKLTYLLKHSLGGNSKTLMFVNISPLTKDLNETINSLRFATK 707
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 72/277 (25%), Positives = 119/277 (42%), Gaps = 59/277 (21%)
Query: 135 EFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGNE----- 189
EF FD + + S ++Y ++ LLEG+ C+ YG TG GK+++M
Sbjct: 62 EFHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEIL 121
Query: 190 -NHKGIMYLTMG-IRNRVSALTRQ--------------------------------MCTM 215
H GI+ +G I RV+A RQ M
Sbjct: 122 PEHLGILPRALGDIFERVTA--RQENNKDAIQVYASFIEIYNEKPFDLLGSTPHMPMVAA 179
Query: 216 RMYK-TCLILRRKPSICEKMQL------MVYVKMQDKATKQMKMV-----------KLSM 257
R + TCL L + + ++L + M +++ +V ++++
Sbjct: 180 RCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSKTHHSRMNI 239
Query: 258 IDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLADGCRHVPYRDSKLTRILKDS 317
+DLAGSE + +EG NIN LL++ + S+A G +PYRDS LT +L+ S
Sbjct: 240 VDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGHTVIPYRDSVLTTVLQAS 299
Query: 318 LGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKIK 354
L +A I+P ++ +TL++ T AKK++
Sbjct: 300 LTAQSYLTFLACISPHQCDLSETLSTLRFGTSAKKLR 336
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
Complex With Adp
Length = 359
Score = 89.0 bits (219), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 72/119 (60%), Gaps = 3/119 (2%)
Query: 238 VYVKMQDKATKQMKMV--KLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINS 295
+Y++ + + K + K++++DLAGSER + S KE + INKSL L I +
Sbjct: 241 IYLEAHSRTLSEEKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIA 300
Query: 296 LADGCR-HVPYRDSKLTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKI 353
L D R H+P+R KLT LKDSLGGNC V++ NI A E++ ++L++A+R K +
Sbjct: 301 LGDQKRDHIPFRQCKLTHALKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFASRMKLV 359
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 65/132 (49%), Gaps = 21/132 (15%)
Query: 68 GEQSHMKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDIN 127
G + + ++RV+P +D H E+++ D H K R +
Sbjct: 21 GTRKKVHAFVRVKPT----DDFAH-EMIRY----------GDDKRSIDIHLKKDIRRGVV 65
Query: 128 KKKSKEMEFLFDRVYGPSESNQD-VYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTML 186
+ + F D V +++QD VY+ KD+++ L+GYN ++ YG TGAGKT+TM+
Sbjct: 66 NNQQTDWSFKLDGVL--HDASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMM 123
Query: 187 G---NENHKGIM 195
G N H+GI+
Sbjct: 124 GATENYKHRGIL 135
>pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus
Length = 100
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/79 (54%), Positives = 59/79 (74%), Gaps = 1/79 (1%)
Query: 281 NINKSLLALGNCINSLADGCR-HVPYRDSKLTRILKDSLGGNCKTVMIANIAPTALSYED 339
NINKSL ALGN I++LA+G + HVPYRDSK+TRIL+DSL GNC+T ++ +P+ + +
Sbjct: 3 NINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAE 62
Query: 340 SYNTLKYATRAKKIKAKVS 358
+ +TL + RAK IK VS
Sbjct: 63 TKSTLMFGQRAKTIKNTVS 81
>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|D Chain D, Kinesin (Dimeric) From Rattus Norvegicus
Length = 117
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/77 (54%), Positives = 58/77 (75%), Gaps = 1/77 (1%)
Query: 283 NKSLLALGNCINSLADGCR-HVPYRDSKLTRILKDSLGGNCKTVMIANIAPTALSYEDSY 341
NKSL ALGN I++LA+G + HVPYRDSK+TRIL+DSLGGNC+T ++ +P+ + ++
Sbjct: 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETK 60
Query: 342 NTLKYATRAKKIKAKVS 358
+TL + RAK IK VS
Sbjct: 61 STLMFGQRAKTIKNTVS 77
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 75/122 (61%), Gaps = 3/122 (2%)
Query: 236 LMVYVKMQDKATKQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCI-- 293
MV++ ++ T + KL+++DLAGSER +++ R +E NINKSL LG+ I
Sbjct: 224 FMVHINGRNLHTGETSQGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYA 283
Query: 294 -NSLADGCRHVPYRDSKLTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKK 352
N+ G R++P+R+SKLT +L+ SL G+ KT+M NI P ++ N+L++A++
Sbjct: 284 LNTPDAGKRYIPFRNSKLTYLLQYSLVGDSKTLMFVNIPPDPNHISETLNSLRFASKVNS 343
Query: 353 IK 354
K
Sbjct: 344 TK 345
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 64/121 (52%), Gaps = 26/121 (21%)
Query: 72 HMKVYIRVRPQSQKE-EDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVK--QSLRDINK 128
+++VY RVRP E +D H I K F+ K QSL IN+
Sbjct: 6 NIRVYCRVRPPLLNEPQDMSHILIEK-------------------FNEAKGAQSL-TINR 45
Query: 129 KKSKEM--EFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTML 186
+ + + F FD ++ PS +N+++++ + ++ S L+GYN +F YG TG+GKT+TML
Sbjct: 46 NEGRILSYNFQFDMIFEPSHTNKEIFE-EIRQLVQSSLDGYNVCIFAYGQTGSGKTYTML 104
Query: 187 G 187
Sbjct: 105 N 105
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 80/122 (65%), Gaps = 3/122 (2%)
Query: 236 LMVYVKMQDKATKQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINS 295
+++++ +++ T + L+++DLAGSER ++ R +E +INKSL LG+ I++
Sbjct: 245 FIIHLEGKNEGTGEKSQGILNLVDLAGSERLNSSMVVGERLRETQSINKSLSCLGDVIHA 304
Query: 296 L--ADGC-RHVPYRDSKLTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKK 352
L DG RH+P+R+SKLT +L+ SL G+ KT+M NI+P AL ++ N+L++A++
Sbjct: 305 LNSPDGQKRHIPFRNSKLTYLLQYSLIGSSKTLMFVNISPAALHLNETINSLRFASKVNN 364
Query: 353 IK 354
K
Sbjct: 365 TK 366
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 61/115 (53%), Gaps = 18/115 (15%)
Query: 72 HMKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKS 131
+++VY R+RP E+D N + I P DD+ Q + IN+ S
Sbjct: 29 NIRVYCRIRPPLPHEDD----------NIEHIKVQPFDDDNG------DQGMT-INRGNS 71
Query: 132 KEMEFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTML 186
+ + F FD+++ E+N +++ +I S L+GYN +F YG TG+GKT+TML
Sbjct: 72 QVIPFKFDKIFDQQETNDEIFK-EVGQLIQSSLDGYNVCIFAYGQTGSGKTYTML 125
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 85.5 bits (210), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 71/274 (25%), Positives = 116/274 (42%), Gaps = 59/274 (21%)
Query: 135 EFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGNE----- 189
EF FD + + S ++Y ++ LLEG+ C+ YG TG GK+++M
Sbjct: 62 EFHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEIL 121
Query: 190 -NHKGIMYLTMG-IRNRVSALTRQ--------------------------------MCTM 215
H GI+ +G I RV+A RQ M
Sbjct: 122 PEHLGILPRALGDIFERVTA--RQENNKDAIQVYASFIEIYNEKPFDLLGSTPHMPMVAA 179
Query: 216 RMYK-TCLILRRKPSICEKMQL------MVYVKMQDKATKQMKMV-----------KLSM 257
R + TCL L + + ++L + M +++ +V ++++
Sbjct: 180 RCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSKTHHSRMNI 239
Query: 258 IDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLADGCRHVPYRDSKLTRILKDS 317
+DLAGSE + +EG NIN LL++ + S+A G +PYRDS LT +L+ S
Sbjct: 240 VDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGHTVIPYRDSVLTTVLQAS 299
Query: 318 LGGNCKTVMIANIAPTALSYEDSYNTLKYATRAK 351
L +A I+P ++ +TL++ T AK
Sbjct: 300 LTAQSYLTFLACISPHQCDLSETLSTLRFGTSAK 333
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 85.1 bits (209), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 72/108 (66%), Gaps = 4/108 (3%)
Query: 255 LSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLA--DGC-RHVPYRDSKLT 311
L+++DLAGSER + R +E NINKSL ALG+ I++L D RH+P+R+SKLT
Sbjct: 296 LNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQPDSTKRHIPFRNSKLT 355
Query: 312 RILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKIKAKVSR 359
+L+ SL G+ KT+M NI+P++ ++ N+L++A++ + VSR
Sbjct: 356 YLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL-VSR 402
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 63/117 (53%), Gaps = 17/117 (14%)
Query: 72 HMKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKS 131
+++VY+R+RP + E N DT + + + D GV QS+ + +
Sbjct: 60 NIRVYLRIRPALKNLE-----------NSDTSLINVNEFDDN---SGV-QSMEVTKIQNT 104
Query: 132 KEM-EFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLG 187
++ EF FD+++ ++N DV+ ++ S L+GYN ++F YG TG+GKT TML
Sbjct: 105 AQVHEFKFDKIFDQQDTNVDVFK-EVGQLVQSSLDGYNVAIFAYGQTGSGKTFTMLN 160
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 71/108 (65%), Gaps = 4/108 (3%)
Query: 255 LSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLA--DGC-RHVPYRDSKLT 311
L+++DLAGSER + R +E NINKSL LG+ I++L D RH+P+R+SKLT
Sbjct: 251 LNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLT 310
Query: 312 RILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKIKAKVSR 359
+L+ SL G+ KT+M NI+P++ ++ N+L++A++ + VSR
Sbjct: 311 YLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL-VSR 357
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 61/117 (52%), Gaps = 17/117 (14%)
Query: 72 HMKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKS 131
+++VY R+RP + E N DT + + + D GV QS+ + +
Sbjct: 15 NIRVYCRIRPALKNLE-----------NSDTSLINVNEFDDN---SGV-QSMEVTKIQNT 59
Query: 132 KEM-EFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLG 187
++ EF FD+++ ++N DV+ ++ S L+GYN +F YG TG+GKT TML
Sbjct: 60 AQVHEFKFDKIFDQQDTNVDVFK-EVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLN 115
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 81.6 bits (200), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 71/108 (65%), Gaps = 4/108 (3%)
Query: 255 LSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLA--DGC-RHVPYRDSKLT 311
L+++DLAGSER + R +E NINKSL LG+ I++L D RH+P+R+SKLT
Sbjct: 239 LNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLT 298
Query: 312 RILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKIKAKVSR 359
+L+ SL G+ KT+M NI+P++ ++ N+L++A++ + VSR
Sbjct: 299 YLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL-VSR 345
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 61/116 (52%), Gaps = 17/116 (14%)
Query: 72 HMKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKS 131
+++VY R+RP + E N DT + + + D GV QS+ + +
Sbjct: 3 NIRVYCRIRPALKNLE-----------NSDTSLINVNEFDDN---SGV-QSMEVTKIQNT 47
Query: 132 KEM-EFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTML 186
++ EF FD+++ ++N DV+ ++ S L+GYN +F YG TG+GKT TML
Sbjct: 48 AQVHEFKFDKIFDQQDTNVDVFK-EVGQLVQSSLDGYNVCIFAYGQTGSGKTFTML 102
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 81.6 bits (200), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 71/108 (65%), Gaps = 4/108 (3%)
Query: 255 LSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLA--DGC-RHVPYRDSKLT 311
L+++DLAGSER + R +E NINKSL LG+ I++L D RH+P+R+SKLT
Sbjct: 240 LNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLT 299
Query: 312 RILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKIKAKVSR 359
+L+ SL G+ KT+M NI+P++ ++ N+L++A++ + VSR
Sbjct: 300 YLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL-VSR 346
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 61/116 (52%), Gaps = 17/116 (14%)
Query: 72 HMKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKS 131
+++VY R+RP + E N DT + + + D GV QS+ + +
Sbjct: 4 NIRVYCRIRPALKNLE-----------NSDTSLINVNEFDDN---SGV-QSMEVTKIQNT 48
Query: 132 KEM-EFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTML 186
++ EF FD+++ ++N DV+ ++ S L+GYN +F YG TG+GKT TML
Sbjct: 49 AQVHEFKFDKIFDQQDTNVDVFK-EVGQLVQSSLDGYNVCIFAYGQTGSGKTFTML 103
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 70/108 (64%), Gaps = 4/108 (3%)
Query: 255 LSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLA--DGC-RHVPYRDSKLT 311
L+++DLAGS R + R +E NINKSL LG+ I++L D RH+P+R+SKLT
Sbjct: 240 LNLVDLAGSARINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLT 299
Query: 312 RILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKIKAKVSR 359
+L+ SL G+ KT+M NI+P++ ++ N+L++A++ + VSR
Sbjct: 300 YLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL-VSR 346
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 61/116 (52%), Gaps = 17/116 (14%)
Query: 72 HMKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKS 131
+++VY R+RP + E N DT + + + D GV QS+ + +
Sbjct: 4 NIRVYCRIRPALKNLE-----------NSDTSLINVNEFDDN---SGV-QSMEVTKIQNT 48
Query: 132 KEM-EFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTML 186
++ EF FD+++ ++N DV+ ++ S L+GYN +F YG TG+GKT TML
Sbjct: 49 AQVHEFKFDKIFDQQDTNVDVFK-EVGQLVQSSLDGYNVCIFAYGQTGSGKTFTML 103
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 70/108 (64%), Gaps = 4/108 (3%)
Query: 255 LSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLA--DGC-RHVPYRDSKLT 311
L+++DLAGSER + R +E NI KSL LG+ I++L D RH+P+R+SKLT
Sbjct: 240 LNLVDLAGSERINVSQVVGDRLRETQNIKKSLSCLGDVIHALGQPDSTKRHIPFRNSKLT 299
Query: 312 RILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKIKAKVSR 359
+L+ SL G+ KT+M NI+P++ ++ N+L++A++ + VSR
Sbjct: 300 YLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL-VSR 346
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 61/117 (52%), Gaps = 17/117 (14%)
Query: 72 HMKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKS 131
+++VY R+RP + E N DT + + + D GV QS+ + +
Sbjct: 4 NIRVYCRIRPALKNLE-----------NSDTSLINVNEFDDN---SGV-QSMEVTKIQNT 48
Query: 132 KEM-EFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLG 187
++ EF FD+++ ++N DV+ ++ S L+GYN +F YG TG+GKT TML
Sbjct: 49 AQVHEFKFDKIFDQQDTNVDVFK-EVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLN 104
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 69/115 (60%), Gaps = 7/115 (6%)
Query: 248 KQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLADGCRHVPYRD 307
+++ + ++++DLAGSE ++ R E NIN+SL L N I +L H+PYR+
Sbjct: 289 QEISVGSINLVDLAGSESPKTST----RMTETKNINRSLSELTNVILALLQKQDHIPYRN 344
Query: 308 SKLTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRA---KKIKAKVSR 359
SKLT +L SLGGN KT+M N++P +++S +L++A K KAK +R
Sbjct: 345 SKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRNR 399
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 64/130 (49%), Gaps = 17/130 (13%)
Query: 72 HMKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKS 131
+++V+ R+RP + EE NR + D+S QS+ K K
Sbjct: 68 NIRVFCRIRPPLESEE-----------NRMCCTW-TYHDESTVEL----QSIDAQAKSKM 111
Query: 132 KEMEFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGNENH 191
+ F FD+V+ P S D+++ +I S L+GYN +F YG TG+GKT+TM G
Sbjct: 112 GQQIFSFDQVFHPLSSQSDIFE-MVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPES 170
Query: 192 KGIMYLTMGI 201
G++ T+ +
Sbjct: 171 VGVIPRTVDL 180
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 69/115 (60%), Gaps = 7/115 (6%)
Query: 248 KQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLADGCRHVPYRD 307
+++ + ++++DLAGSE ++ R E NIN+SL L N I +L H+PYR+
Sbjct: 275 QEISVGSINLVDLAGSESPKTST----RMTETKNINRSLSELTNVILALLQKQDHIPYRN 330
Query: 308 SKLTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRA---KKIKAKVSR 359
SKLT +L SLGGN KT+M N++P +++S +L++A K KAK +R
Sbjct: 331 SKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRNR 385
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 65/130 (50%), Gaps = 17/130 (13%)
Query: 72 HMKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKS 131
+++V+ R+RP + EE NR + D+S QS+ K K
Sbjct: 54 NIRVFCRIRPPLESEE-----------NRMCCTW-TYHDESTVEL----QSIDAQAKSKM 97
Query: 132 KEMEFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGNENH 191
+ F FD+V+ P S D+++ + +I S L+GYN +F YG TG+GKT+TM G
Sbjct: 98 GQQIFSFDQVFHPLSSQSDIFEMVSP-LIQSALDGYNICIFAYGQTGSGKTYTMDGVPES 156
Query: 192 KGIMYLTMGI 201
G++ T+ +
Sbjct: 157 VGVIPRTVDL 166
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 69/115 (60%), Gaps = 7/115 (6%)
Query: 248 KQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLADGCRHVPYRD 307
+++ + ++++DLAGSE ++ R E NIN+SL L N I +L H+PYR+
Sbjct: 281 QEISVGSINLVDLAGSESPKTST----RMTETKNINRSLSELTNVILALLQKQDHIPYRN 336
Query: 308 SKLTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRA---KKIKAKVSR 359
SKLT +L SLGGN KT+M N++P +++S +L++A K KAK +R
Sbjct: 337 SKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRNR 391
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 65/130 (50%), Gaps = 17/130 (13%)
Query: 72 HMKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKS 131
+++V+ R+RP + EE NR + D+S QS+ K K
Sbjct: 60 NIRVFCRIRPPLESEE-----------NRMCCTW-TYHDESTVEL----QSIDAQAKSKM 103
Query: 132 KEMEFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGNENH 191
+ F FD+V+ P S D+++ + +I S L+GYN +F YG TG+GKT+TM G
Sbjct: 104 GQQIFSFDQVFHPLSSQSDIFEMVSP-LIQSALDGYNICIFAYGQTGSGKTYTMDGVPES 162
Query: 192 KGIMYLTMGI 201
G++ T+ +
Sbjct: 163 VGVIPRTVDL 172
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 78.6 bits (192), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 64/107 (59%), Gaps = 4/107 (3%)
Query: 248 KQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLADGCRHVPYRD 307
+++ + ++++DLAGSE ++ R E NIN+SL L N I +L H+PYR+
Sbjct: 278 QEISVGSINLVDLAGSESPKTST----RMTETKNINRSLSELTNVILALLQKQDHIPYRN 333
Query: 308 SKLTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKIK 354
SKLT +L SLGGN KT+M N++P +++S +L++A K
Sbjct: 334 SKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCK 380
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 64/130 (49%), Gaps = 17/130 (13%)
Query: 72 HMKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKS 131
+++V+ R+RP + EE NR + D+S QS+ K K
Sbjct: 57 NIRVFCRIRPPLESEE-----------NRMCCTW-TYHDESTVEL----QSIDAQAKSKM 100
Query: 132 KEMEFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGNENH 191
+ F FD+V+ P S D+++ +I S L+GYN +F YG +G+GKT+TM G
Sbjct: 101 GQQIFSFDQVFHPLSSQSDIFE-MVSPLIQSALDGYNICIFAYGQSGSGKTYTMDGVPES 159
Query: 192 KGIMYLTMGI 201
G++ T+ +
Sbjct: 160 VGVIPRTVDL 169
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 68/115 (59%), Gaps = 7/115 (6%)
Query: 248 KQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLADGCRHVPYRD 307
+++ + ++++DLAGSE ++ R E NI +SL L N I +L H+PYR+
Sbjct: 278 QEISVGSINLVDLAGSESPKTST----RMTETKNIKRSLSELTNVILALLQKQDHIPYRN 333
Query: 308 SKLTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRA---KKIKAKVSR 359
SKLT +L SLGGN KT+M N++P +++S +L++A K KAK +R
Sbjct: 334 SKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRNR 388
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 65/130 (50%), Gaps = 17/130 (13%)
Query: 72 HMKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKS 131
+++V+ R+RP + EE NR + D+S QS+ K K
Sbjct: 57 NIRVFCRIRPPLESEE-----------NRMCCTW-TYHDESTVEL----QSIDAQAKSKM 100
Query: 132 KEMEFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGNENH 191
+ F FD+V+ P S D+++ + +I S L+GYN +F YG TG+GKT+TM G
Sbjct: 101 GQQIFSFDQVFHPLSSQSDIFEMVSP-LIQSALDGYNICIFAYGQTGSGKTYTMDGVPES 159
Query: 192 KGIMYLTMGI 201
G++ T+ +
Sbjct: 160 VGVIPRTVDL 169
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus
pdb|3KIN|A Chain A, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|C Chain C, Kinesin (Dimeric) From Rattus Norvegicus
Length = 238
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 136 FLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGNENHKGIM 195
++FDRV P+ + + VY+ K I+ +LEGYN ++F YG T +GKTHTM G + +
Sbjct: 46 YVFDRVLPPNTTQEQVYNACAKQIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPQL- 104
Query: 196 YLTMGIRNRVS 206
MGI R++
Sbjct: 105 ---MGIIPRIA 112
>pdb|3R8F|A Chain A, Protein-Dna Complex
pdb|3R8F|B Chain B, Protein-Dna Complex
pdb|3R8F|C Chain C, Protein-Dna Complex
pdb|3R8F|D Chain D, Protein-Dna Complex
Length = 324
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 146 ESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTM--LGNENHK 192
E N+ Y+ K+ + +L YN +F+YG+ G GKTH + GNE K
Sbjct: 17 EGNRLAYE-VVKEALENLGSLYN-PIFIYGSVGTGKTHLLQAAGNEAKK 63
>pdb|2HCB|A Chain A, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
pdb|2HCB|B Chain B, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
pdb|2HCB|C Chain C, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
pdb|2HCB|D Chain D, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
Length = 323
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 146 ESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTM--LGNENHK 192
E N+ Y+ K+ + +L YN +F+YG+ G GKTH + GNE K
Sbjct: 16 EGNRLAYE-VVKEALENLGSLYN-PIFIYGSVGTGKTHLLQAAGNEAKK 62
>pdb|1L8Q|A Chain A, Crystal Structure Of Dna Replication Initiation Factor
Length = 324
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 146 ESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTM--LGNENHK 192
E N+ Y+ K+ + +L YN +F+YG+ G GKTH + GNE K
Sbjct: 17 EGNRLAYE-VVKEALENLGSLYN-PIFIYGSVGTGKTHLLQAAGNEAKK 63
>pdb|3G7R|A Chain A, Crystal Structure Of Sco4454, A Tetr-Family
Transcriptional Regulator From Streptomyces Coelicolor
pdb|3G7R|B Chain B, Crystal Structure Of Sco4454, A Tetr-Family
Transcriptional Regulator From Streptomyces Coelicolor
Length = 221
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Query: 104 IFDPKQDDSEFFFHGVKQSLRDINKKKS 131
+FDP+ SE F HGV+ LRD+++K S
Sbjct: 194 LFDPELV-SETFLHGVEGVLRDVSEKTS 220
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,685,418
Number of Sequences: 62578
Number of extensions: 411475
Number of successful extensions: 1137
Number of sequences better than 100.0: 62
Number of HSP's better than 100.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 931
Number of HSP's gapped (non-prelim): 138
length of query: 409
length of database: 14,973,337
effective HSP length: 101
effective length of query: 308
effective length of database: 8,652,959
effective search space: 2665111372
effective search space used: 2665111372
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)