Query psy4062
Match_columns 409
No_of_seqs 280 out of 1671
Neff 7.0
Searched_HMMs 46136
Date Sat Aug 17 00:21:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4062.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4062hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0243|consensus 100.0 5E-76 1.1E-80 630.5 19.5 306 70-395 48-433 (1041)
2 KOG4280|consensus 100.0 2.9E-74 6.4E-79 593.9 18.5 279 70-368 4-351 (574)
3 KOG0245|consensus 100.0 7.8E-74 1.7E-78 604.1 18.5 277 70-368 3-363 (1221)
4 cd01370 KISc_KIP3_like Kinesin 100.0 3.3E-71 7.1E-76 553.2 28.5 271 72-353 1-338 (338)
5 KOG0242|consensus 100.0 1.9E-70 4.2E-75 584.1 21.5 286 70-374 5-352 (675)
6 cd01373 KISc_KLP2_like Kinesin 100.0 4.1E-69 8.8E-74 537.9 28.0 258 71-353 1-337 (337)
7 cd01368 KISc_KIF23_like Kinesi 100.0 7.2E-69 1.6E-73 537.6 28.5 270 71-351 1-345 (345)
8 cd01365 KISc_KIF1A_KIF1B Kines 100.0 4E-68 8.6E-73 534.6 28.8 272 71-360 1-356 (356)
9 PLN03188 kinesin-12 family pro 100.0 3.8E-68 8.2E-73 575.1 27.7 266 69-365 96-446 (1320)
10 cd01367 KISc_KIF2_like Kinesin 100.0 6.9E-67 1.5E-71 518.9 26.4 263 71-351 1-322 (322)
11 KOG0240|consensus 100.0 4.1E-68 9E-73 536.3 16.5 275 69-367 5-345 (607)
12 cd01364 KISc_BimC_Eg5 Kinesin 100.0 3.1E-66 6.7E-71 520.2 28.5 271 71-361 2-351 (352)
13 cd01371 KISc_KIF3 Kinesin moto 100.0 1E-65 2.2E-70 512.7 27.9 264 71-353 1-333 (333)
14 cd01369 KISc_KHC_KIF5 Kinesin 100.0 9.3E-66 2E-70 511.5 27.5 259 71-353 2-325 (325)
15 cd01376 KISc_KID_like Kinesin 100.0 1.4E-65 3.1E-70 508.9 28.3 255 72-351 1-319 (319)
16 cd01374 KISc_CENP_E Kinesin mo 100.0 5.2E-65 1.1E-69 505.4 27.7 256 72-353 1-321 (321)
17 KOG0241|consensus 100.0 7.3E-66 1.6E-70 535.9 20.1 282 70-367 3-365 (1714)
18 cd01372 KISc_KIF4 Kinesin moto 100.0 2E-64 4.4E-69 504.9 25.9 256 72-354 2-341 (341)
19 KOG0239|consensus 100.0 2.2E-65 4.8E-70 543.7 13.4 281 50-359 302-646 (670)
20 cd01375 KISc_KIF9_like Kinesin 100.0 2.4E-63 5.3E-68 495.8 26.3 262 72-351 1-334 (334)
21 cd01366 KISc_C_terminal Kinesi 100.0 6.1E-63 1.3E-67 492.0 28.8 262 70-356 1-329 (329)
22 smart00129 KISc Kinesin motor, 100.0 1.2E-61 2.6E-66 483.7 28.7 268 72-360 1-335 (335)
23 cd00106 KISc Kinesin motor dom 100.0 3.6E-60 7.9E-65 471.5 28.4 260 72-351 1-328 (328)
24 KOG0246|consensus 100.0 9.2E-60 2E-64 474.5 22.9 271 70-358 207-546 (676)
25 PF00225 Kinesin: Kinesin moto 100.0 3.7E-60 8E-65 472.8 18.0 258 78-353 1-335 (335)
26 KOG0247|consensus 100.0 4.8E-58 1E-62 473.5 17.6 280 69-363 29-446 (809)
27 KOG0244|consensus 100.0 9.8E-57 2.1E-61 475.5 4.1 258 79-363 1-327 (913)
28 COG5059 KIP1 Kinesin-like prot 100.0 1.1E-52 2.4E-57 443.3 19.9 227 133-361 55-344 (568)
29 cd01363 Motor_domain Myosin an 100.0 2.5E-48 5.4E-53 357.3 16.9 176 151-332 8-186 (186)
30 COG5059 KIP1 Kinesin-like prot 97.2 4.7E-06 1E-10 89.2 -9.8 155 132-297 351-566 (568)
31 PF00308 Bac_DnaA: Bacterial d 93.6 0.027 5.9E-07 53.1 1.0 49 135-186 4-52 (219)
32 PRK06893 DNA replication initi 93.6 0.045 9.9E-07 51.8 2.5 46 135-186 12-57 (229)
33 COG2805 PilT Tfp pilus assembl 93.5 0.034 7.5E-07 54.7 1.5 31 156-186 113-143 (353)
34 PRK06620 hypothetical protein; 92.3 0.065 1.4E-06 50.4 1.5 50 134-187 11-63 (214)
35 COG2804 PulE Type II secretory 91.8 0.097 2.1E-06 54.9 2.2 32 156-187 246-277 (500)
36 PRK12377 putative replication 90.8 0.1 2.2E-06 50.4 1.1 50 136-187 71-120 (248)
37 PRK05642 DNA replication initi 90.5 0.16 3.6E-06 48.2 2.2 45 135-186 15-63 (234)
38 PRK09087 hypothetical protein; 90.3 0.16 3.5E-06 48.1 2.0 46 135-186 17-62 (226)
39 COG0556 UvrB Helicase subunit 90.0 0.23 5E-06 52.3 3.0 48 135-187 4-51 (663)
40 PRK06526 transposase; Provisio 89.5 0.11 2.3E-06 50.3 0.1 17 171-187 101-117 (254)
41 PRK08116 hypothetical protein; 89.2 0.15 3.3E-06 49.6 0.9 51 135-187 81-133 (268)
42 PRK08084 DNA replication initi 89.2 0.18 4E-06 47.9 1.4 46 135-186 18-63 (235)
43 PF04851 ResIII: Type III rest 89.2 0.18 3.9E-06 44.6 1.3 31 157-187 13-44 (184)
44 PRK14086 dnaA chromosomal repl 88.6 0.15 3.3E-06 55.1 0.5 51 134-187 283-333 (617)
45 PRK14088 dnaA chromosomal repl 88.5 0.17 3.6E-06 52.9 0.7 50 134-187 100-149 (440)
46 cd00009 AAA The AAA+ (ATPases 88.1 0.27 6E-06 41.0 1.7 29 157-185 8-36 (151)
47 TIGR00362 DnaA chromosomal rep 88.0 0.2 4.4E-06 51.5 0.9 51 134-187 105-155 (405)
48 PRK07952 DNA replication prote 88.0 0.3 6.6E-06 46.9 2.0 51 135-187 68-118 (244)
49 PRK00149 dnaA chromosomal repl 87.6 0.22 4.9E-06 51.9 0.9 51 134-187 117-167 (450)
50 PRK08727 hypothetical protein; 87.5 0.36 7.8E-06 45.9 2.2 18 169-186 42-59 (233)
51 PRK08903 DnaA regulatory inact 87.2 0.37 8E-06 45.2 2.1 48 134-186 13-60 (227)
52 TIGR02928 orc1/cdc6 family rep 87.1 0.33 7.2E-06 48.7 1.8 28 159-186 30-58 (365)
53 PRK14087 dnaA chromosomal repl 87.1 0.26 5.6E-06 51.6 1.1 50 135-187 111-160 (450)
54 PRK00411 cdc6 cell division co 86.6 0.38 8.3E-06 48.9 1.9 28 159-186 45-73 (394)
55 PRK08181 transposase; Validate 86.2 0.45 9.8E-06 46.4 2.2 21 165-187 105-125 (269)
56 PRK10436 hypothetical protein; 86.0 0.34 7.4E-06 50.9 1.3 28 159-186 209-236 (462)
57 PF13245 AAA_19: Part of AAA d 85.9 0.35 7.6E-06 37.9 1.0 26 160-186 3-28 (76)
58 cd00046 DEXDc DEAD-like helica 85.5 0.28 6.1E-06 40.5 0.3 17 171-187 3-19 (144)
59 TIGR02538 type_IV_pilB type IV 85.0 0.41 8.8E-06 51.6 1.3 29 159-187 307-335 (564)
60 TIGR02533 type_II_gspE general 85.0 0.46 1E-05 50.3 1.7 28 159-186 233-260 (486)
61 PRK08939 primosomal protein Dn 84.9 0.34 7.3E-06 48.2 0.6 51 136-187 124-175 (306)
62 COG1474 CDC6 Cdc6-related prot 84.4 0.5 1.1E-05 48.2 1.6 26 160-185 33-59 (366)
63 PF00270 DEAD: DEAD/DEAH box h 84.4 0.52 1.1E-05 41.3 1.5 26 159-186 7-32 (169)
64 PF00437 T2SE: Type II/IV secr 84.2 0.35 7.7E-06 46.6 0.4 29 158-186 114-145 (270)
65 TIGR01420 pilT_fam pilus retra 84.0 0.52 1.1E-05 47.5 1.5 29 158-186 112-140 (343)
66 TIGR02525 plasmid_TraJ plasmid 83.7 0.57 1.2E-05 47.9 1.6 28 158-186 140-167 (372)
67 PF01935 DUF87: Domain of unkn 83.6 0.37 7.9E-06 45.2 0.2 17 170-186 25-41 (229)
68 PF13401 AAA_22: AAA domain; P 82.9 0.36 7.9E-06 40.5 -0.1 18 168-185 4-21 (131)
69 PF01695 IstB_IS21: IstB-like 82.6 0.81 1.7E-05 41.7 2.0 20 168-187 47-66 (178)
70 PRK06835 DNA replication prote 82.5 0.8 1.7E-05 46.0 2.1 31 156-187 172-202 (329)
71 COG1484 DnaC DNA replication p 82.4 0.72 1.6E-05 44.6 1.7 50 135-187 75-124 (254)
72 cd01131 PilT Pilus retraction 82.3 0.48 1E-05 43.8 0.4 18 169-186 2-19 (198)
73 TIGR02524 dot_icm_DotB Dot/Icm 82.1 0.7 1.5E-05 47.0 1.6 24 163-186 129-152 (358)
74 cd01129 PulE-GspE PulE/GspE Th 82.1 0.75 1.6E-05 44.7 1.7 28 159-186 71-98 (264)
75 smart00382 AAA ATPases associa 81.7 0.51 1.1E-05 38.8 0.4 18 169-186 3-20 (148)
76 TIGR02782 TrbB_P P-type conjug 81.5 0.73 1.6E-05 45.6 1.4 30 156-186 121-150 (299)
77 COG0593 DnaA ATPase involved i 81.4 0.69 1.5E-05 47.7 1.2 50 134-187 82-132 (408)
78 PF13604 AAA_30: AAA domain; P 81.3 0.78 1.7E-05 42.4 1.4 28 159-186 9-36 (196)
79 PF12846 AAA_10: AAA-like doma 81.2 0.53 1.2E-05 45.2 0.3 19 168-186 1-19 (304)
80 COG5008 PilU Tfp pilus assembl 80.7 1 2.2E-05 44.0 2.0 31 156-186 115-145 (375)
81 TIGR03420 DnaA_homol_Hda DnaA 80.6 1.1 2.4E-05 41.6 2.2 46 135-186 11-56 (226)
82 TIGR03015 pepcterm_ATPase puta 80.5 1.2 2.6E-05 42.5 2.5 23 164-186 39-61 (269)
83 smart00053 DYNc Dynamin, GTPas 78.9 1.2 2.7E-05 42.7 2.0 31 170-200 28-64 (240)
84 KOG0989|consensus 78.7 1.1 2.5E-05 44.3 1.7 36 151-186 39-75 (346)
85 PRK13894 conjugal transfer ATP 77.6 1.1 2.5E-05 44.7 1.4 28 157-185 138-165 (319)
86 PRK09183 transposase/IS protei 76.9 0.99 2.1E-05 43.7 0.7 21 165-187 101-121 (259)
87 PF05970 PIF1: PIF1-like helic 76.8 1 2.2E-05 45.8 0.8 37 145-185 3-39 (364)
88 PF01637 Arch_ATPase: Archaeal 76.8 0.84 1.8E-05 41.9 0.2 30 157-186 9-38 (234)
89 PTZ00112 origin recognition co 76.4 1.6 3.4E-05 49.3 2.1 22 165-186 778-799 (1164)
90 PF13479 AAA_24: AAA domain 76.3 1.1 2.3E-05 41.9 0.8 21 168-188 3-23 (213)
91 PRK12422 chromosomal replicati 76.2 1.3 2.8E-05 46.4 1.4 52 133-187 105-160 (445)
92 PRK13833 conjugal transfer pro 75.6 1.4 3E-05 44.3 1.3 29 157-186 134-162 (323)
93 cd01130 VirB11-like_ATPase Typ 75.4 1.5 3.3E-05 39.9 1.5 30 156-186 14-43 (186)
94 COG4962 CpaF Flp pilus assembl 75.2 1.6 3.4E-05 44.0 1.6 28 157-185 163-190 (355)
95 PF00004 AAA: ATPase family as 75.0 1.3 2.7E-05 37.0 0.8 15 171-185 1-15 (132)
96 PRK12402 replication factor C 75.0 1.6 3.5E-05 43.1 1.6 42 137-186 13-54 (337)
97 PF00448 SRP54: SRP54-type pro 74.9 1 2.2E-05 41.7 0.2 17 170-186 3-19 (196)
98 PF13086 AAA_11: AAA domain; P 74.2 1.6 3.4E-05 40.0 1.3 26 160-186 10-35 (236)
99 smart00487 DEXDc DEAD-like hel 73.8 1.9 4.2E-05 37.8 1.7 28 159-187 16-43 (201)
100 PHA00729 NTP-binding motif con 73.7 2.6 5.7E-05 40.1 2.7 31 156-186 5-35 (226)
101 PF02562 PhoH: PhoH-like prote 73.5 2.2 4.7E-05 40.0 2.0 20 167-186 18-37 (205)
102 PHA02544 44 clamp loader, smal 72.5 2 4.4E-05 42.2 1.7 22 165-186 39-61 (316)
103 PF13207 AAA_17: AAA domain; P 72.1 1.7 3.7E-05 36.0 0.9 16 170-185 1-16 (121)
104 cd00268 DEADc DEAD-box helicas 71.5 2.5 5.4E-05 38.4 1.9 25 159-185 29-53 (203)
105 PRK13851 type IV secretion sys 71.3 2.1 4.6E-05 43.3 1.5 30 156-186 151-180 (344)
106 PF13191 AAA_16: AAA ATPase do 71.0 0.95 2.1E-05 40.2 -1.0 21 165-185 21-41 (185)
107 PF00580 UvrD-helicase: UvrD/R 71.0 1.6 3.4E-05 42.2 0.5 20 167-186 12-31 (315)
108 PRK13900 type IV secretion sys 70.9 2.1 4.6E-05 43.0 1.4 29 157-186 150-178 (332)
109 PF01580 FtsK_SpoIIIE: FtsK/Sp 70.9 1.3 2.9E-05 40.7 -0.1 17 170-186 40-56 (205)
110 PRK06921 hypothetical protein; 70.4 2.1 4.5E-05 41.7 1.2 31 157-187 103-136 (266)
111 PF00910 RNA_helicase: RNA hel 69.9 1.3 2.8E-05 36.7 -0.3 15 171-185 1-15 (107)
112 PF06309 Torsin: Torsin; Inte 69.5 1.1 2.5E-05 38.7 -0.8 17 169-185 53-70 (127)
113 PF07724 AAA_2: AAA domain (Cd 68.9 2.1 4.5E-05 38.8 0.8 17 169-185 4-20 (171)
114 PF13671 AAA_33: AAA domain; P 68.5 2.1 4.5E-05 36.5 0.6 15 171-185 2-16 (143)
115 PF07728 AAA_5: AAA domain (dy 68.4 1.6 3.5E-05 37.3 -0.0 15 171-185 2-16 (139)
116 PLN00020 ribulose bisphosphate 68.4 3.1 6.6E-05 42.7 1.9 52 134-185 110-165 (413)
117 PRK11776 ATP-dependent RNA hel 68.3 3.7 7.9E-05 42.8 2.6 24 159-184 34-57 (460)
118 PRK13342 recombination factor 68.2 2.8 6E-05 43.3 1.6 39 147-186 16-54 (413)
119 PRK11192 ATP-dependent RNA hel 67.7 3 6.6E-05 43.0 1.8 25 158-184 30-54 (434)
120 PRK13764 ATPase; Provisional 67.7 2.5 5.5E-05 45.8 1.3 20 167-186 256-275 (602)
121 PRK06547 hypothetical protein; 67.4 4.5 9.9E-05 36.6 2.7 29 157-185 4-32 (172)
122 COG1223 Predicted ATPase (AAA+ 67.1 2.2 4.7E-05 41.7 0.5 18 168-185 151-168 (368)
123 KOG0926|consensus 66.8 3.8 8.2E-05 45.6 2.3 18 168-185 271-288 (1172)
124 PF03215 Rad17: Rad17 cell cyc 66.7 3.3 7.2E-05 44.2 1.9 31 156-186 31-63 (519)
125 PRK03992 proteasome-activating 66.6 1.3 2.8E-05 45.5 -1.2 50 136-185 128-182 (389)
126 PF05496 RuvB_N: Holliday junc 66.4 5.6 0.00012 38.0 3.1 43 142-185 23-67 (233)
127 TIGR03499 FlhF flagellar biosy 66.4 2.2 4.7E-05 41.8 0.4 17 170-186 196-212 (282)
128 PLN03025 replication factor C 66.0 3.4 7.5E-05 41.0 1.8 21 166-186 32-52 (319)
129 TIGR00635 ruvB Holliday juncti 65.9 2.7 5.9E-05 41.1 1.0 40 146-186 7-48 (305)
130 PRK04837 ATP-dependent RNA hel 65.4 3.5 7.5E-05 42.5 1.7 25 159-185 38-62 (423)
131 PTZ00424 helicase 45; Provisio 65.3 4.5 9.7E-05 41.0 2.5 26 158-185 57-82 (401)
132 TIGR02903 spore_lon_C ATP-depe 65.1 3.9 8.4E-05 44.7 2.1 42 136-185 151-192 (615)
133 PRK10536 hypothetical protein; 65.1 4 8.6E-05 39.7 1.9 41 136-186 52-92 (262)
134 PF00063 Myosin_head: Myosin h 65.0 3.2 6.9E-05 45.8 1.4 35 150-185 67-102 (689)
135 PRK10590 ATP-dependent RNA hel 64.8 3.9 8.4E-05 42.7 1.9 24 159-184 31-54 (456)
136 PF13238 AAA_18: AAA domain; P 64.6 2.8 6E-05 34.7 0.6 15 171-185 1-15 (129)
137 PRK04328 hypothetical protein; 64.0 5.2 0.00011 38.3 2.5 28 156-183 8-38 (249)
138 PRK12723 flagellar biosynthesi 63.5 2.6 5.7E-05 43.3 0.4 19 168-186 174-192 (388)
139 TIGR02881 spore_V_K stage V sp 63.4 2.7 5.8E-05 40.5 0.4 18 169-186 43-60 (261)
140 TIGR02237 recomb_radB DNA repa 63.2 4.4 9.5E-05 37.2 1.8 25 161-185 2-29 (209)
141 COG1201 Lhr Lhr-like helicases 62.6 5.6 0.00012 44.7 2.7 26 159-186 30-55 (814)
142 CHL00081 chlI Mg-protoporyphyr 62.5 2.6 5.6E-05 42.8 0.1 45 134-186 12-56 (350)
143 PF06414 Zeta_toxin: Zeta toxi 62.5 2.9 6.3E-05 38.4 0.4 19 168-186 15-33 (199)
144 PRK14722 flhF flagellar biosyn 62.3 2.9 6.4E-05 42.7 0.5 19 168-186 137-155 (374)
145 TIGR00348 hsdR type I site-spe 62.2 4.6 0.0001 44.5 2.0 31 156-187 247-282 (667)
146 cd01123 Rad51_DMC1_radA Rad51_ 60.7 5.9 0.00013 37.0 2.2 30 156-185 4-36 (235)
147 PRK00440 rfc replication facto 60.7 4.8 0.0001 39.3 1.6 21 165-185 35-55 (319)
148 PHA02244 ATPase-like protein 60.6 6.4 0.00014 40.3 2.6 35 150-186 103-137 (383)
149 PF12775 AAA_7: P-loop contain 60.3 4.6 0.0001 39.4 1.4 27 159-186 25-51 (272)
150 PRK11331 5-methylcytosine-spec 60.2 5.6 0.00012 41.7 2.1 28 156-185 184-211 (459)
151 PRK11448 hsdR type I restricti 59.7 3.8 8.3E-05 47.8 0.9 30 157-187 423-452 (1123)
152 COG1219 ClpX ATP-dependent pro 59.6 4 8.7E-05 40.9 0.9 17 168-184 97-113 (408)
153 COG4096 HsdR Type I site-speci 59.6 8.7 0.00019 42.9 3.5 31 155-186 173-203 (875)
154 KOG2543|consensus 59.4 3.2 7E-05 42.4 0.2 18 169-186 31-48 (438)
155 PF00735 Septin: Septin; Inte 59.2 3.8 8.3E-05 40.2 0.6 21 165-185 1-21 (281)
156 PRK14961 DNA polymerase III su 59.1 5.1 0.00011 40.6 1.6 41 137-185 14-55 (363)
157 PTZ00454 26S protease regulato 59.0 2.2 4.9E-05 44.0 -1.1 52 135-186 141-197 (398)
158 PHA02653 RNA helicase NPH-II; 58.9 7.3 0.00016 43.0 2.8 25 158-184 171-195 (675)
159 PRK04195 replication factor C 58.9 4.1 8.8E-05 43.0 0.8 30 157-186 27-57 (482)
160 PF02456 Adeno_IVa2: Adenoviru 58.9 3.8 8.2E-05 40.8 0.6 16 171-186 90-105 (369)
161 PF06048 DUF927: Domain of unk 58.5 5.6 0.00012 39.0 1.7 37 153-190 179-221 (286)
162 TIGR01242 26Sp45 26S proteasom 58.2 3.7 8.1E-05 41.5 0.4 52 135-186 118-174 (364)
163 TIGR02902 spore_lonB ATP-depen 58.1 5.8 0.00013 42.5 1.9 42 136-185 62-103 (531)
164 COG2256 MGS1 ATPase related to 57.7 6.5 0.00014 40.5 2.0 42 138-184 23-64 (436)
165 PRK13341 recombination factor 57.5 5.5 0.00012 44.4 1.6 22 165-186 49-70 (725)
166 cd01120 RecA-like_NTPases RecA 56.6 3.8 8.2E-05 35.0 0.1 16 171-186 2-17 (165)
167 PF06745 KaiC: KaiC; InterPro 56.4 7.7 0.00017 36.1 2.2 27 158-184 6-35 (226)
168 PRK06067 flagellar accessory p 56.4 7.2 0.00016 36.6 2.0 31 155-185 9-42 (234)
169 PRK11634 ATP-dependent RNA hel 55.8 8.2 0.00018 42.3 2.6 25 159-185 36-60 (629)
170 smart00242 MYSc Myosin. Large 55.0 7.2 0.00016 43.1 2.0 36 149-185 73-109 (677)
171 PF05729 NACHT: NACHT domain 54.8 4.9 0.00011 34.7 0.5 17 170-186 2-18 (166)
172 PRK04537 ATP-dependent RNA hel 54.5 7.2 0.00016 42.2 1.8 25 159-185 39-63 (572)
173 PF10236 DAP3: Mitochondrial r 54.4 6.9 0.00015 38.9 1.6 23 164-186 19-41 (309)
174 cd01379 MYSc_type_III Myosin m 54.2 14 0.00031 40.6 4.1 61 150-211 68-138 (653)
175 TIGR01618 phage_P_loop phage n 54.1 4.8 0.0001 38.1 0.4 22 168-189 12-33 (220)
176 KOG3859|consensus 54.1 8.5 0.00018 37.9 2.1 29 157-185 30-59 (406)
177 TIGR02788 VirB11 P-type DNA tr 54.1 7.5 0.00016 38.5 1.8 29 156-185 133-161 (308)
178 smart00763 AAA_PrkA PrkA AAA d 54.1 11 0.00024 38.4 2.9 43 138-185 49-95 (361)
179 TIGR02640 gas_vesic_GvpN gas v 54.0 9.7 0.00021 36.7 2.5 27 157-185 12-38 (262)
180 COG1419 FlhF Flagellar GTP-bin 53.9 7.4 0.00016 40.1 1.7 37 149-185 180-220 (407)
181 TIGR00614 recQ_fam ATP-depende 53.8 10 0.00022 39.8 2.8 26 158-185 18-43 (470)
182 TIGR01650 PD_CobS cobaltochela 53.6 10 0.00023 38.1 2.7 40 144-185 41-81 (327)
183 TIGR03819 heli_sec_ATPase heli 53.6 7.3 0.00016 39.3 1.6 31 155-186 166-196 (340)
184 PRK09361 radB DNA repair and r 53.4 11 0.00023 35.1 2.6 31 155-185 7-40 (225)
185 TIGR00376 DNA helicase, putati 52.6 8 0.00017 42.4 1.8 28 159-187 165-192 (637)
186 PRK10917 ATP-dependent DNA hel 52.4 9.7 0.00021 42.1 2.5 21 166-186 280-300 (681)
187 cd01126 TraG_VirD4 The TraG/Tr 52.3 7.9 0.00017 39.4 1.7 16 171-186 2-17 (384)
188 KOG0335|consensus 52.3 6.5 0.00014 41.4 1.0 24 162-187 107-130 (482)
189 PF13555 AAA_29: P-loop contai 52.0 5.1 0.00011 30.2 0.1 15 171-185 26-40 (62)
190 PRK10416 signal recognition pa 51.9 8.3 0.00018 38.6 1.7 18 169-186 115-132 (318)
191 PRK00080 ruvB Holliday junctio 51.8 8.8 0.00019 38.2 1.9 40 146-186 28-69 (328)
192 TIGR00631 uvrb excinuclease AB 51.3 7.5 0.00016 42.8 1.4 47 136-187 2-48 (655)
193 PRK05703 flhF flagellar biosyn 51.3 5.8 0.00012 41.3 0.5 18 169-186 222-239 (424)
194 cd01383 MYSc_type_VIII Myosin 51.3 11 0.00024 41.7 2.6 35 150-185 74-109 (677)
195 TIGR03158 cas3_cyano CRISPR-as 51.1 12 0.00026 37.8 2.8 27 159-185 5-31 (357)
196 cd01393 recA_like RecA is a b 51.0 12 0.00027 34.5 2.6 32 155-186 3-37 (226)
197 KOG0086|consensus 51.0 95 0.0021 28.0 7.9 17 251-267 56-72 (214)
198 COG3829 RocR Transcriptional r 50.9 6.7 0.00015 41.8 0.9 42 133-182 239-282 (560)
199 PLN00206 DEAD-box ATP-dependen 50.8 13 0.00028 39.7 3.0 24 159-184 151-174 (518)
200 KOG0354|consensus 50.8 12 0.00026 41.5 2.8 26 157-185 68-93 (746)
201 cd02021 GntK Gluconate kinase 50.5 6.8 0.00015 33.8 0.7 15 171-185 2-16 (150)
202 cd01384 MYSc_type_XI Myosin mo 50.3 11 0.00023 41.7 2.4 35 150-185 70-105 (674)
203 cd01387 MYSc_type_XV Myosin mo 50.3 11 0.00024 41.7 2.5 35 150-185 69-104 (677)
204 cd01381 MYSc_type_VII Myosin m 50.2 12 0.00025 41.4 2.7 35 150-185 68-103 (671)
205 PF13173 AAA_14: AAA domain 50.2 6.1 0.00013 33.5 0.4 17 170-186 4-20 (128)
206 PRK00131 aroK shikimate kinase 50.2 7.6 0.00016 34.0 1.0 17 169-185 5-21 (175)
207 COG1222 RPT1 ATP-dependent 26S 50.1 7.5 0.00016 39.6 1.0 47 137-183 149-200 (406)
208 PRK01297 ATP-dependent RNA hel 49.8 11 0.00024 39.5 2.3 26 158-185 116-141 (475)
209 cd00124 MYSc Myosin motor doma 49.5 11 0.00023 41.8 2.2 36 149-185 67-103 (679)
210 cd01850 CDC_Septin CDC/Septin. 49.3 7.3 0.00016 38.0 0.8 21 165-185 1-21 (276)
211 CHL00181 cbbX CbbX; Provisiona 49.3 7.2 0.00016 38.3 0.8 15 171-185 62-76 (287)
212 cd01385 MYSc_type_IX Myosin mo 48.9 11 0.00024 41.7 2.2 35 150-185 76-111 (692)
213 cd01377 MYSc_type_II Myosin mo 48.7 11 0.00024 41.8 2.1 36 149-185 72-108 (693)
214 TIGR03877 thermo_KaiC_1 KaiC d 48.7 14 0.00031 34.9 2.7 28 156-183 6-36 (237)
215 cd01378 MYSc_type_I Myosin mot 48.6 12 0.00027 41.3 2.5 35 150-185 68-103 (674)
216 PRK10865 protein disaggregatio 48.4 12 0.00026 42.6 2.4 17 169-185 599-615 (857)
217 PRK05580 primosome assembly pr 48.0 12 0.00025 41.5 2.2 18 169-186 163-180 (679)
218 cd01394 radB RadB. The archaea 48.0 16 0.00035 33.7 2.9 31 156-186 4-37 (218)
219 TIGR01241 FtsH_fam ATP-depende 48.0 6.4 0.00014 41.7 0.2 51 135-186 51-106 (495)
220 PRK11057 ATP-dependent DNA hel 47.9 13 0.00028 40.5 2.6 25 158-184 32-56 (607)
221 cd01382 MYSc_type_VI Myosin mo 47.8 11 0.00024 41.9 2.1 35 150-185 73-108 (717)
222 cd01127 TrwB Bacterial conjuga 47.4 6.6 0.00014 40.5 0.2 17 169-185 43-59 (410)
223 PF13476 AAA_23: AAA domain; P 47.3 7.4 0.00016 34.7 0.5 18 169-186 20-37 (202)
224 TIGR01817 nifA Nif-specific re 47.2 6.8 0.00015 41.8 0.3 45 135-185 192-236 (534)
225 COG1125 OpuBA ABC-type proline 47.1 7.1 0.00015 38.1 0.3 36 320-363 184-219 (309)
226 COG5019 CDC3 Septin family pro 47.1 12 0.00026 38.1 1.9 20 165-184 20-39 (373)
227 TIGR02030 BchI-ChlI magnesium 47.0 9.1 0.0002 38.6 1.1 44 136-187 1-44 (337)
228 TIGR01359 UMP_CMP_kin_fam UMP- 46.8 8.6 0.00019 34.4 0.8 15 171-185 2-16 (183)
229 PRK06995 flhF flagellar biosyn 46.7 7.3 0.00016 41.3 0.4 18 169-186 257-274 (484)
230 TIGR00643 recG ATP-dependent D 46.6 13 0.00028 40.6 2.3 17 169-185 257-273 (630)
231 PRK14974 cell division protein 46.3 15 0.00032 37.2 2.4 19 168-186 140-158 (336)
232 PRK06696 uridine kinase; Valid 46.1 16 0.00034 34.2 2.6 30 156-185 7-39 (223)
233 cd01380 MYSc_type_V Myosin mot 46.0 13 0.00028 41.2 2.2 35 150-185 68-103 (691)
234 PF00931 NB-ARC: NB-ARC domain 46.0 17 0.00037 34.8 2.8 30 156-185 5-36 (287)
235 TIGR02880 cbbX_cfxQ probable R 46.0 8.6 0.00019 37.7 0.7 16 170-185 60-75 (284)
236 PRK01172 ski2-like helicase; P 46.0 14 0.0003 40.6 2.5 23 160-184 31-53 (674)
237 cd00464 SK Shikimate kinase (S 45.9 8.4 0.00018 33.1 0.6 16 170-185 1-16 (154)
238 PTZ00361 26 proteosome regulat 45.8 7.2 0.00016 40.8 0.2 16 170-185 219-234 (438)
239 KOG0340|consensus 45.3 12 0.00026 38.0 1.7 30 157-188 35-64 (442)
240 TIGR01313 therm_gnt_kin carboh 45.1 7.7 0.00017 34.0 0.2 14 171-184 1-14 (163)
241 TIGR03881 KaiC_arch_4 KaiC dom 45.1 16 0.00034 34.1 2.3 30 156-185 5-37 (229)
242 TIGR02746 TraC-F-type type-IV 45.1 7.4 0.00016 43.5 0.2 19 168-186 430-448 (797)
243 PRK07261 topology modulation p 45.1 11 0.00023 33.9 1.1 15 171-185 3-17 (171)
244 PHA02624 large T antigen; Prov 45.0 14 0.00031 40.2 2.3 27 159-185 420-448 (647)
245 TIGR01389 recQ ATP-dependent D 44.9 16 0.00035 39.4 2.7 27 157-185 19-45 (591)
246 PRK10820 DNA-binding transcrip 44.8 7.8 0.00017 41.4 0.2 45 134-186 199-245 (520)
247 COG0606 Predicted ATPase with 44.7 8.7 0.00019 40.4 0.6 29 165-198 197-225 (490)
248 PF05673 DUF815: Protein of un 44.7 11 0.00023 36.4 1.1 46 136-186 24-70 (249)
249 COG0467 RAD55 RecA-superfamily 44.6 15 0.00033 35.1 2.3 25 160-184 12-39 (260)
250 PRK00771 signal recognition pa 44.5 15 0.00032 38.5 2.3 19 168-186 95-113 (437)
251 cd01124 KaiC KaiC is a circadi 44.4 11 0.00024 33.6 1.1 15 171-185 2-16 (187)
252 KOG1803|consensus 44.4 12 0.00026 40.4 1.5 18 169-186 202-219 (649)
253 KOG0330|consensus 44.2 14 0.00029 38.1 1.8 25 159-185 91-115 (476)
254 PRK08118 topology modulation p 44.2 9.9 0.00022 34.1 0.8 14 171-184 4-17 (167)
255 cd01428 ADK Adenylate kinase ( 44.2 9.9 0.00021 34.1 0.8 15 171-185 2-16 (194)
256 TIGR02236 recomb_radA DNA repa 44.1 17 0.00036 35.9 2.5 31 155-185 79-112 (310)
257 COG0630 VirB11 Type IV secreto 43.8 7.9 0.00017 38.6 0.1 19 168-186 143-161 (312)
258 PRK15429 formate hydrogenlyase 43.7 8.9 0.00019 42.3 0.5 44 136-185 373-416 (686)
259 smart00489 DEXDc3 DEAD-like he 43.5 13 0.00029 36.4 1.7 37 144-186 9-45 (289)
260 smart00488 DEXDc2 DEAD-like he 43.5 13 0.00029 36.4 1.7 37 144-186 9-45 (289)
261 TIGR03744 traC_PFL_4706 conjug 43.5 8.2 0.00018 44.1 0.2 20 167-186 474-493 (893)
262 CHL00195 ycf46 Ycf46; Provisio 43.3 9.3 0.0002 40.6 0.5 18 169-186 260-277 (489)
263 PF08477 Miro: Miro-like prote 43.2 12 0.00026 30.5 1.1 15 171-185 2-16 (119)
264 PF12774 AAA_6: Hydrolytic ATP 43.2 12 0.00025 35.8 1.1 17 170-186 34-50 (231)
265 PRK12726 flagellar biosynthesi 43.1 9.2 0.0002 39.5 0.4 18 169-186 207-224 (407)
266 CHL00176 ftsH cell division pr 43.0 7.6 0.00016 42.6 -0.2 18 169-186 217-234 (638)
267 PRK11889 flhF flagellar biosyn 42.9 9 0.00019 39.8 0.3 18 169-186 242-259 (436)
268 TIGR01243 CDC48 AAA family ATP 42.8 7.6 0.00016 43.3 -0.2 51 135-185 174-229 (733)
269 TIGR03878 thermo_KaiC_2 KaiC d 42.7 18 0.00039 34.8 2.4 19 165-183 31-51 (259)
270 KOG0729|consensus 42.7 13 0.00028 36.6 1.3 21 165-185 206-228 (435)
271 PRK06217 hypothetical protein; 42.6 11 0.00023 34.1 0.8 15 171-185 4-18 (183)
272 KOG0739|consensus 42.6 11 0.00023 37.7 0.8 48 138-185 132-183 (439)
273 PRK09270 nucleoside triphospha 42.4 16 0.00035 34.3 2.0 20 166-185 31-50 (229)
274 KOG1547|consensus 42.3 23 0.00051 34.3 3.0 31 154-184 31-62 (336)
275 PRK08233 hypothetical protein; 42.1 11 0.00024 33.4 0.8 16 170-185 5-20 (182)
276 PRK15424 propionate catabolism 41.9 9.9 0.00021 40.9 0.5 43 135-185 215-259 (538)
277 PHA01747 putative ATP-dependen 41.8 11 0.00024 38.5 0.8 31 156-186 178-208 (425)
278 TIGR02322 phosphon_PhnN phosph 41.7 9.9 0.00021 33.9 0.4 16 170-185 3-18 (179)
279 PTZ00110 helicase; Provisional 41.5 18 0.00038 38.9 2.3 25 159-185 160-184 (545)
280 cd02020 CMPK Cytidine monophos 41.4 13 0.00029 31.4 1.2 15 171-185 2-16 (147)
281 TIGR02655 circ_KaiC circadian 41.4 18 0.00039 38.2 2.3 65 281-345 273-346 (484)
282 PF10412 TrwB_AAD_bind: Type I 41.3 8.5 0.00018 39.4 -0.1 17 170-186 17-33 (386)
283 cd00820 PEPCK_HprK Phosphoenol 41.0 11 0.00024 31.6 0.5 18 169-186 16-33 (107)
284 TIGR02329 propionate_PrpR prop 40.9 9.9 0.00021 40.7 0.3 45 134-186 207-253 (526)
285 TIGR03817 DECH_helic helicase/ 40.7 19 0.00041 40.3 2.5 26 158-185 43-68 (742)
286 cd01386 MYSc_type_XVIII Myosin 40.7 16 0.00034 41.1 1.8 35 150-185 68-103 (767)
287 PF14532 Sigma54_activ_2: Sigm 40.5 13 0.00027 31.9 0.9 21 165-185 18-38 (138)
288 PRK05342 clpX ATP-dependent pr 40.4 13 0.00027 38.7 1.0 18 168-185 108-125 (412)
289 TIGR00064 ftsY signal recognit 40.2 13 0.00027 36.4 0.9 18 169-186 73-90 (272)
290 cd00983 recA RecA is a bacter 40.1 24 0.00052 35.4 2.9 33 153-185 36-72 (325)
291 cd01983 Fer4_NifH The Fer4_Nif 40.1 11 0.00024 28.9 0.4 15 171-185 2-16 (99)
292 PRK04301 radA DNA repair and r 40.1 22 0.00048 35.2 2.6 32 155-186 86-120 (317)
293 PRK14964 DNA polymerase III su 40.0 14 0.0003 39.3 1.2 41 137-185 11-52 (491)
294 TIGR03689 pup_AAA proteasome A 39.9 12 0.00026 40.0 0.7 16 170-185 218-233 (512)
295 PRK06305 DNA polymerase III su 39.9 15 0.00032 38.6 1.4 41 137-185 15-56 (451)
296 PF04548 AIG1: AIG1 family; I 39.7 13 0.00027 34.6 0.8 16 170-185 2-17 (212)
297 KOG0953|consensus 39.7 13 0.00029 39.8 1.0 17 170-186 193-209 (700)
298 TIGR02238 recomb_DMC1 meiotic 39.6 24 0.00052 35.2 2.8 31 155-185 80-113 (313)
299 PRK13767 ATP-dependent helicas 39.6 20 0.00044 40.9 2.5 24 160-185 41-64 (876)
300 PRK14721 flhF flagellar biosyn 39.6 11 0.00025 39.1 0.5 19 168-186 191-209 (420)
301 KOG0735|consensus 39.5 13 0.00028 41.2 0.8 22 166-187 699-720 (952)
302 TIGR03880 KaiC_arch_3 KaiC dom 39.4 23 0.00049 32.9 2.5 27 159-185 4-33 (224)
303 TIGR02173 cyt_kin_arch cytidyl 39.3 13 0.00028 32.5 0.8 16 170-185 2-17 (171)
304 PRK14962 DNA polymerase III su 39.2 19 0.00042 38.0 2.1 42 137-186 12-54 (472)
305 PF00158 Sigma54_activat: Sigm 39.1 17 0.00037 32.7 1.5 21 164-184 18-38 (168)
306 cd02023 UMPK Uridine monophosp 39.1 11 0.00023 34.4 0.2 15 171-185 2-16 (198)
307 PRK10689 transcription-repair 39.1 20 0.00042 42.2 2.3 39 143-185 600-638 (1147)
308 PRK14970 DNA polymerase III su 38.9 17 0.00037 36.6 1.7 29 157-185 27-56 (367)
309 PRK14729 miaA tRNA delta(2)-is 38.9 16 0.00034 36.4 1.3 15 170-184 6-20 (300)
310 PF02534 T4SS-DNA_transf: Type 38.8 21 0.00046 37.1 2.4 18 169-186 45-62 (469)
311 PF07693 KAP_NTPase: KAP famil 38.8 15 0.00032 36.0 1.2 20 166-185 18-37 (325)
312 COG3598 RepA RecA-family ATPas 38.7 21 0.00045 36.1 2.1 46 138-185 60-106 (402)
313 PRK14723 flhF flagellar biosyn 38.6 12 0.00027 41.7 0.6 18 169-186 186-203 (767)
314 TIGR00602 rad24 checkpoint pro 38.6 15 0.00033 40.3 1.3 17 170-186 112-128 (637)
315 PF02367 UPF0079: Uncharacteri 38.5 23 0.00049 30.5 2.1 18 169-186 16-33 (123)
316 PRK14531 adenylate kinase; Pro 38.4 14 0.0003 33.4 0.8 16 170-185 4-19 (183)
317 PRK11034 clpA ATP-dependent Cl 38.4 19 0.0004 40.5 1.9 18 168-185 488-505 (758)
318 KOG2373|consensus 38.3 27 0.00058 35.6 2.8 29 157-186 260-291 (514)
319 PRK09354 recA recombinase A; P 38.1 25 0.00054 35.7 2.6 32 154-185 42-77 (349)
320 PRK04040 adenylate kinase; Pro 38.1 14 0.0003 33.9 0.8 16 170-185 4-19 (188)
321 PF00485 PRK: Phosphoribulokin 38.0 13 0.00029 33.8 0.6 15 171-185 2-16 (194)
322 PRK09302 circadian clock prote 38.0 23 0.00049 37.6 2.5 31 155-185 15-48 (509)
323 KOG0348|consensus 37.9 19 0.00042 38.5 1.8 26 157-184 165-190 (708)
324 PLN03187 meiotic recombination 37.9 24 0.00053 35.7 2.5 32 154-185 109-143 (344)
325 TIGR02012 tigrfam_recA protein 37.8 24 0.00053 35.3 2.5 32 154-185 37-72 (321)
326 PLN03137 ATP-dependent DNA hel 37.7 23 0.0005 41.4 2.6 26 157-184 466-491 (1195)
327 TIGR03238 dnd_assoc_3 dnd syst 37.6 17 0.00037 38.6 1.4 31 157-187 15-51 (504)
328 TIGR02397 dnaX_nterm DNA polym 37.5 20 0.00043 35.6 1.9 28 158-185 25-53 (355)
329 KOG0652|consensus 37.5 16 0.00034 35.8 1.1 16 169-184 206-221 (424)
330 PF10923 DUF2791: P-loop Domai 37.2 20 0.00043 37.3 1.8 30 157-186 38-67 (416)
331 KOG0727|consensus 37.2 32 0.0007 33.6 3.1 48 137-184 153-205 (408)
332 TIGR00382 clpX endopeptidase C 37.1 15 0.00033 38.1 1.0 18 169-186 117-134 (413)
333 PRK13531 regulatory ATPase Rav 37.1 19 0.00041 38.3 1.6 29 155-185 28-56 (498)
334 PRK11664 ATP-dependent RNA hel 37.1 23 0.00049 40.1 2.4 27 157-185 11-37 (812)
335 TIGR00580 mfd transcription-re 36.9 20 0.00043 41.2 1.9 29 157-185 461-489 (926)
336 TIGR01360 aden_kin_iso1 adenyl 36.8 15 0.00033 32.6 0.8 16 170-185 5-20 (188)
337 TIGR00929 VirB4_CagE type IV s 36.6 13 0.00028 41.5 0.3 18 168-185 434-451 (785)
338 PRK06762 hypothetical protein; 36.6 17 0.00036 32.0 1.0 15 170-184 4-18 (166)
339 TIGR03263 guanyl_kin guanylate 36.1 19 0.00042 31.9 1.4 16 170-185 3-18 (180)
340 PRK14955 DNA polymerase III su 36.1 24 0.00052 36.3 2.2 40 137-185 14-55 (397)
341 PRK14532 adenylate kinase; Pro 36.1 17 0.00037 32.7 1.1 16 170-185 2-17 (188)
342 PRK14952 DNA polymerase III su 35.9 17 0.00037 39.5 1.1 41 137-185 11-52 (584)
343 PRK09111 DNA polymerase III su 35.9 18 0.00039 39.5 1.3 27 159-185 36-63 (598)
344 PRK12724 flagellar biosynthesi 35.8 14 0.0003 38.6 0.4 18 169-186 224-241 (432)
345 PRK13889 conjugal transfer rel 35.8 20 0.00043 41.4 1.7 28 158-186 353-380 (988)
346 TIGR02639 ClpA ATP-dependent C 35.7 21 0.00046 39.8 1.9 17 169-185 485-501 (731)
347 TIGR00231 small_GTP small GTP- 35.7 13 0.00028 30.9 0.2 16 170-185 3-18 (161)
348 KOG0745|consensus 35.5 17 0.00037 38.0 1.0 17 169-185 227-243 (564)
349 PTZ00035 Rad51 protein; Provis 34.9 32 0.00069 34.7 2.8 32 154-185 101-135 (337)
350 TIGR02688 conserved hypothetic 34.8 26 0.00056 36.7 2.2 25 161-187 204-228 (449)
351 cd00071 GMPK Guanosine monopho 34.8 19 0.00042 31.0 1.1 15 171-185 2-16 (137)
352 PF01745 IPT: Isopentenyl tran 34.7 19 0.00041 34.3 1.1 15 171-185 4-18 (233)
353 TIGR02768 TraA_Ti Ti-type conj 34.3 22 0.00047 39.8 1.7 28 159-187 360-387 (744)
354 PRK06851 hypothetical protein; 34.3 20 0.00043 36.7 1.2 28 159-186 21-48 (367)
355 COG1126 GlnQ ABC-type polar am 34.0 22 0.00047 33.9 1.3 15 171-185 31-45 (240)
356 TIGR01587 cas3_core CRISPR-ass 33.8 19 0.00042 35.8 1.1 15 171-185 2-16 (358)
357 cd02027 APSK Adenosine 5'-phos 33.8 17 0.00036 31.8 0.6 15 171-185 2-16 (149)
358 COG1122 CbiO ABC-type cobalt t 33.7 22 0.00047 34.0 1.4 17 169-185 31-47 (235)
359 PRK03839 putative kinase; Prov 33.7 18 0.00039 32.4 0.7 14 171-184 3-16 (180)
360 TIGR02442 Cob-chelat-sub cobal 33.7 25 0.00055 38.5 2.1 42 136-185 1-42 (633)
361 PRK06645 DNA polymerase III su 33.6 22 0.00048 38.0 1.5 24 162-185 36-60 (507)
362 COG3839 MalK ABC-type sugar tr 33.6 15 0.00032 37.2 0.2 15 171-185 32-46 (338)
363 PRK06731 flhF flagellar biosyn 33.5 15 0.00034 35.8 0.3 18 169-186 76-93 (270)
364 cd02019 NK Nucleoside/nucleoti 33.5 22 0.00048 26.7 1.1 15 171-185 2-16 (69)
365 PRK12727 flagellar biosynthesi 33.5 16 0.00034 39.3 0.4 18 169-186 351-368 (559)
366 PRK00300 gmk guanylate kinase; 33.3 23 0.00049 32.3 1.4 17 169-185 6-22 (205)
367 PF00025 Arf: ADP-ribosylation 33.2 34 0.00073 30.5 2.5 27 158-184 3-30 (175)
368 PTZ00014 myosin-A; Provisional 33.1 28 0.0006 39.5 2.3 29 157-185 171-200 (821)
369 KOG0344|consensus 33.1 25 0.00055 37.8 1.8 26 158-185 165-190 (593)
370 KOG0742|consensus 33.1 21 0.00045 37.2 1.2 14 169-182 385-398 (630)
371 COG3842 PotA ABC-type spermidi 33.1 15 0.00033 37.3 0.2 14 173-186 36-49 (352)
372 COG0324 MiaA tRNA delta(2)-iso 32.9 21 0.00046 35.6 1.2 16 170-185 5-20 (308)
373 TIGR01074 rep ATP-dependent DN 32.8 18 0.00038 39.7 0.6 20 168-187 14-33 (664)
374 PRK13721 conjugal transfer ATP 32.7 16 0.00034 41.6 0.2 19 168-186 449-467 (844)
375 PHA02774 E1; Provisional 32.7 28 0.00062 37.8 2.1 26 160-185 424-451 (613)
376 PRK09401 reverse gyrase; Revie 32.7 32 0.00068 40.6 2.7 24 158-183 87-110 (1176)
377 PRK14960 DNA polymerase III su 32.5 23 0.0005 39.1 1.5 41 137-185 13-54 (702)
378 KOG0741|consensus 32.3 23 0.00051 38.0 1.4 16 169-184 257-272 (744)
379 PF03193 DUF258: Protein of un 32.3 33 0.00072 30.9 2.2 27 157-185 26-52 (161)
380 PRK05022 anaerobic nitric oxid 32.2 17 0.00036 38.7 0.3 43 137-185 185-227 (509)
381 TIGR00235 udk uridine kinase. 32.2 20 0.00042 33.1 0.8 16 170-185 8-23 (207)
382 cd03274 ABC_SMC4_euk Eukaryoti 32.1 18 0.00038 33.8 0.4 16 170-185 27-42 (212)
383 PRK11608 pspF phage shock prot 31.9 17 0.00037 36.3 0.3 20 166-185 27-46 (326)
384 PRK00091 miaA tRNA delta(2)-is 31.9 22 0.00048 35.4 1.1 16 170-185 6-21 (307)
385 cd02025 PanK Pantothenate kina 31.9 16 0.00034 34.4 0.0 13 173-185 4-16 (220)
386 TIGR01970 DEAH_box_HrpB ATP-de 31.7 31 0.00067 39.1 2.3 27 157-185 8-34 (819)
387 TIGR01351 adk adenylate kinase 31.7 21 0.00045 33.0 0.8 14 171-184 2-15 (210)
388 TIGR01243 CDC48 AAA family ATP 31.6 21 0.00045 39.8 1.0 18 169-186 488-505 (733)
389 TIGR01447 recD exodeoxyribonuc 31.6 24 0.00052 38.4 1.4 26 159-186 153-178 (586)
390 TIGR02639 ClpA ATP-dependent C 31.6 19 0.00042 40.1 0.7 31 157-187 192-222 (731)
391 TIGR00390 hslU ATP-dependent p 31.4 21 0.00045 37.3 0.8 17 169-185 48-64 (441)
392 KOG0328|consensus 31.1 41 0.0009 33.3 2.8 27 158-186 56-82 (400)
393 cd03279 ABC_sbcCD SbcCD and ot 31.1 19 0.00041 33.3 0.5 18 169-186 29-46 (213)
394 PRK14527 adenylate kinase; Pro 30.9 26 0.00057 31.7 1.4 17 169-185 7-23 (191)
395 COG1198 PriA Primosomal protei 30.8 23 0.0005 39.5 1.1 21 166-186 215-235 (730)
396 COG1136 SalX ABC-type antimicr 30.8 17 0.00038 34.6 0.2 15 171-185 34-48 (226)
397 PF01926 MMR_HSR1: 50S ribosom 30.8 24 0.00052 28.8 1.0 15 171-185 2-16 (116)
398 cd01853 Toc34_like Toc34-like 30.5 21 0.00045 34.4 0.6 20 166-185 29-48 (249)
399 cd02028 UMPK_like Uridine mono 30.5 22 0.00047 32.2 0.8 15 171-185 2-16 (179)
400 PRK14530 adenylate kinase; Pro 30.5 24 0.00053 32.6 1.1 16 170-185 5-20 (215)
401 TIGR03345 VI_ClpV1 type VI sec 30.4 31 0.00068 39.3 2.1 17 169-185 597-613 (852)
402 PRK11388 DNA-binding transcrip 30.4 19 0.00042 39.2 0.5 45 135-185 321-365 (638)
403 TIGR00763 lon ATP-dependent pr 30.3 18 0.00039 40.7 0.2 16 170-185 349-364 (775)
404 PRK07003 DNA polymerase III su 30.2 25 0.00054 39.5 1.2 41 137-185 14-55 (830)
405 KOG2655|consensus 30.2 30 0.00064 35.3 1.7 22 163-184 16-37 (366)
406 TIGR02759 TraD_Ftype type IV c 30.2 18 0.00039 39.2 0.1 16 170-185 178-193 (566)
407 TIGR03117 cas_csf4 CRISPR-asso 30.1 25 0.00055 38.6 1.3 32 148-185 2-33 (636)
408 TIGR00174 miaA tRNA isopenteny 30.1 25 0.00054 34.7 1.1 15 171-185 2-16 (287)
409 PF09439 SRPRB: Signal recogni 30.1 27 0.00059 32.0 1.3 15 169-183 4-18 (181)
410 PRK10867 signal recognition pa 30.0 25 0.00054 36.8 1.2 19 168-186 100-118 (433)
411 KOG1970|consensus 30.0 24 0.00052 37.9 1.0 16 170-185 112-127 (634)
412 cd00984 DnaB_C DnaB helicase C 30.0 35 0.00075 31.9 2.1 26 160-185 3-30 (242)
413 TIGR03346 chaperone_ClpB ATP-d 29.9 26 0.00055 39.9 1.3 18 168-185 595-612 (852)
414 PRK13873 conjugal transfer ATP 29.8 21 0.00045 40.3 0.6 16 170-185 443-458 (811)
415 cd01121 Sms Sms (bacterial rad 29.8 27 0.00058 35.8 1.3 31 156-186 67-100 (372)
416 PRK13853 type IV secretion sys 29.8 17 0.00037 40.9 -0.1 18 168-185 426-443 (789)
417 PRK05896 DNA polymerase III su 29.8 33 0.00072 37.4 2.1 42 137-186 14-56 (605)
418 PRK11131 ATP-dependent RNA hel 29.6 26 0.00057 41.5 1.4 25 160-185 82-106 (1294)
419 PRK15483 type III restriction- 29.4 13 0.00028 42.7 -1.2 13 176-188 67-79 (986)
420 PRK14958 DNA polymerase III su 29.3 35 0.00075 36.5 2.1 41 137-185 14-55 (509)
421 cd00544 CobU Adenosylcobinamid 29.3 27 0.00059 31.5 1.1 14 171-184 2-15 (169)
422 cd03115 SRP The signal recogni 29.2 21 0.00046 31.6 0.4 16 171-186 3-18 (173)
423 PRK13880 conjugal transfer cou 29.1 33 0.00071 37.7 2.0 18 169-186 176-193 (636)
424 KOG0987|consensus 29.0 43 0.00094 36.0 2.8 36 145-185 119-154 (540)
425 PHA02530 pseT polynucleotide k 28.9 26 0.00055 34.1 1.0 16 170-185 4-19 (300)
426 PRK11823 DNA repair protein Ra 28.9 41 0.00088 35.3 2.5 32 155-186 64-98 (446)
427 PRK05973 replicative DNA helic 28.8 38 0.00081 32.5 2.1 26 160-185 54-81 (237)
428 COG0464 SpoVK ATPases of the A 28.8 20 0.00042 37.8 0.1 20 166-185 274-293 (494)
429 PRK13891 conjugal transfer pro 28.7 21 0.00045 40.6 0.4 17 169-185 489-505 (852)
430 TIGR00959 ffh signal recogniti 28.7 27 0.00058 36.5 1.1 19 168-186 99-117 (428)
431 TIGR01425 SRP54_euk signal rec 28.7 25 0.00054 36.7 0.9 19 168-186 100-118 (429)
432 cd01371 KISc_KIF3 Kinesin moto 28.7 58 0.0013 32.5 3.5 17 35-51 2-18 (333)
433 PF05872 DUF853: Bacterial pro 28.6 25 0.00055 37.0 0.9 15 172-186 23-37 (502)
434 KOG1514|consensus 28.6 29 0.00064 38.2 1.4 53 301-359 572-633 (767)
435 PRK00279 adk adenylate kinase; 28.6 28 0.00061 32.2 1.2 15 170-184 2-16 (215)
436 PRK10078 ribose 1,5-bisphospho 28.6 30 0.00065 31.2 1.3 16 170-185 4-19 (186)
437 TIGR00678 holB DNA polymerase 28.5 52 0.0011 29.6 2.9 26 160-185 5-31 (188)
438 PRK05480 uridine/cytidine kina 28.5 25 0.00054 32.3 0.8 17 169-185 7-23 (209)
439 KOG0736|consensus 28.4 28 0.00062 38.9 1.3 16 169-184 706-721 (953)
440 PRK04296 thymidine kinase; Pro 28.4 17 0.00037 33.2 -0.3 17 170-186 4-20 (190)
441 PRK05416 glmZ(sRNA)-inactivati 28.4 20 0.00043 35.4 0.1 17 170-186 8-24 (288)
442 PF02463 SMC_N: RecF/RecN/SMC 28.3 29 0.00063 32.0 1.2 16 170-185 26-41 (220)
443 COG0513 SrmB Superfamily II DN 28.3 36 0.00078 36.3 2.0 27 157-185 57-83 (513)
444 PLN02165 adenylate isopentenyl 28.3 29 0.00063 35.0 1.3 17 170-186 45-61 (334)
445 cd03240 ABC_Rad50 The catalyti 28.1 31 0.00067 31.9 1.3 17 170-186 24-40 (204)
446 TIGR02239 recomb_RAD51 DNA rep 28.1 49 0.0011 33.0 2.9 32 154-185 79-113 (316)
447 PRK08533 flagellar accessory p 28.1 32 0.00069 32.5 1.4 18 168-185 24-41 (230)
448 TIGR01967 DEAH_box_HrpA ATP-de 27.9 42 0.00091 39.9 2.6 23 162-185 77-99 (1283)
449 KOG0092|consensus 27.9 1.3E+02 0.0028 28.1 5.3 97 167-299 4-106 (200)
450 KOG0922|consensus 27.9 34 0.00074 37.4 1.8 18 168-185 66-83 (674)
451 PRK14965 DNA polymerase III su 27.8 31 0.00066 37.5 1.4 41 137-185 14-55 (576)
452 PRK10865 protein disaggregatio 27.8 21 0.00047 40.6 0.3 42 138-187 177-218 (857)
453 PRK07940 DNA polymerase III su 27.7 41 0.00089 34.7 2.3 19 167-185 35-53 (394)
454 COG0563 Adk Adenylate kinase a 27.7 27 0.00059 31.8 0.9 13 171-183 3-15 (178)
455 cd03272 ABC_SMC3_euk Eukaryoti 27.7 23 0.0005 33.2 0.4 16 170-185 25-40 (243)
456 PRK05800 cobU adenosylcobinami 27.6 29 0.00064 31.2 1.1 15 170-184 3-17 (170)
457 PRK11034 clpA ATP-dependent Cl 27.5 36 0.00079 38.2 2.0 42 138-187 185-226 (758)
458 cd00227 CPT Chloramphenicol (C 27.5 30 0.00065 30.8 1.1 16 170-185 4-19 (175)
459 PRK05057 aroK shikimate kinase 27.4 33 0.00071 30.8 1.3 17 169-185 5-21 (172)
460 TIGR03783 Bac_Flav_CT_G Bacter 27.4 21 0.00045 40.5 0.1 18 168-185 438-455 (829)
461 KOG0924|consensus 27.4 34 0.00073 37.8 1.6 20 166-185 369-388 (1042)
462 TIGR03346 chaperone_ClpB ATP-d 27.2 23 0.0005 40.2 0.4 32 156-187 182-213 (852)
463 TIGR03574 selen_PSTK L-seryl-t 27.2 26 0.00057 33.2 0.7 15 171-185 2-16 (249)
464 PLN03186 DNA repair protein RA 27.2 51 0.0011 33.3 2.8 33 153-185 105-140 (342)
465 PLN02200 adenylate kinase fami 27.1 30 0.00064 32.9 1.1 33 169-201 44-76 (234)
466 PF13481 AAA_25: AAA domain; P 27.1 26 0.00057 31.3 0.7 28 159-186 20-50 (193)
467 PRK11784 tRNA 2-selenouridine 27.1 25 0.00055 35.6 0.6 30 157-187 131-160 (345)
468 PRK06851 hypothetical protein; 26.9 33 0.00071 35.1 1.3 27 159-185 205-231 (367)
469 PF05707 Zot: Zonular occluden 26.8 28 0.00061 31.8 0.8 15 171-185 3-17 (193)
470 PRK14528 adenylate kinase; Pro 26.8 28 0.00061 31.6 0.8 16 170-185 3-18 (186)
471 PRK11545 gntK gluconate kinase 26.8 16 0.00036 32.4 -0.7 13 174-186 1-13 (163)
472 TIGR02858 spore_III_AA stage I 26.6 44 0.00095 32.6 2.1 30 156-185 98-128 (270)
473 TIGR00176 mobB molybdopterin-g 26.5 23 0.0005 31.4 0.2 15 172-186 3-17 (155)
474 PRK04182 cytidylate kinase; Pr 26.5 32 0.0007 30.2 1.1 16 170-185 2-17 (180)
475 TIGR01547 phage_term_2 phage t 26.4 23 0.00051 36.0 0.2 17 170-186 3-19 (396)
476 TIGR00595 priA primosomal prot 26.4 21 0.00046 38.0 -0.1 14 173-186 2-15 (505)
477 PRK02496 adk adenylate kinase; 26.4 33 0.00071 30.7 1.2 15 171-185 4-18 (184)
478 PRK14950 DNA polymerase III su 26.3 34 0.00073 37.2 1.4 27 159-185 28-55 (585)
479 PRK05563 DNA polymerase III su 26.2 48 0.001 35.9 2.5 41 137-185 14-55 (559)
480 cd01372 KISc_KIF4 Kinesin moto 26.2 41 0.00089 33.6 1.9 17 35-51 2-18 (341)
481 cd01860 Rab5_related Rab5-rela 26.1 39 0.00084 28.9 1.5 17 169-185 2-18 (163)
482 COG0396 sufC Cysteine desulfur 26.1 29 0.00063 33.3 0.8 28 162-189 18-54 (251)
483 KOG1532|consensus 25.9 38 0.00083 33.5 1.6 19 168-186 19-37 (366)
484 PRK13830 conjugal transfer pro 25.9 26 0.00055 39.7 0.4 18 168-185 456-473 (818)
485 cd01370 KISc_KIP3_like Kinesin 25.9 39 0.00084 33.9 1.7 17 35-51 1-17 (338)
486 TIGR01054 rgy reverse gyrase. 25.7 47 0.001 39.2 2.5 26 157-184 84-109 (1171)
487 KOG0744|consensus 25.6 41 0.00089 34.1 1.7 21 167-187 176-196 (423)
488 TIGR02621 cas3_GSU0051 CRISPR- 25.6 41 0.00088 38.2 1.9 26 158-184 22-47 (844)
489 KOG0925|consensus 25.5 38 0.00083 36.0 1.6 20 166-185 60-79 (699)
490 cd04139 RalA_RalB RalA/RalB su 25.4 35 0.00075 29.1 1.1 16 170-185 2-17 (164)
491 KOG0730|consensus 25.4 21 0.00046 39.0 -0.3 27 169-195 469-495 (693)
492 PRK02362 ski2-like helicase; P 25.4 44 0.00095 37.3 2.1 21 163-185 36-56 (737)
493 PRK01184 hypothetical protein; 25.3 31 0.00067 30.9 0.8 15 170-184 3-17 (184)
494 cd02022 DPCK Dephospho-coenzym 25.3 31 0.00066 31.0 0.7 15 171-185 2-16 (179)
495 PTZ00301 uridine kinase; Provi 25.2 30 0.00066 32.3 0.7 15 171-185 6-20 (210)
496 PRK08451 DNA polymerase III su 25.2 34 0.00074 36.8 1.2 42 137-186 12-54 (535)
497 PRK09825 idnK D-gluconate kina 25.1 34 0.00073 30.9 1.0 16 170-185 5-20 (176)
498 PRK11773 uvrD DNA-dependent he 25.1 29 0.00063 38.6 0.6 20 168-187 22-41 (721)
499 PRK05201 hslU ATP-dependent pr 25.0 30 0.00066 36.1 0.7 17 169-185 51-67 (443)
500 KOG2035|consensus 24.9 64 0.0014 32.0 2.9 35 151-185 16-51 (351)
No 1
>KOG0243|consensus
Probab=100.00 E-value=5e-76 Score=630.54 Aligned_cols=306 Identities=34% Similarity=0.544 Sum_probs=267.4
Q ss_pred CCCeEEEEEeCCCCChhhccCCceEEEEeC-CcEEEeCCCCCCCcceeeccccchhhccccCCCceeEeeceEeCCCCCc
Q psy4062 70 QSHMKVYIRVRPQSQKEEDGCHREIVKILN-RDTIIFDPKQDDSEFFFHGVKQSLRDINKKKSKEMEFLFDRVYGPSESN 148 (409)
Q Consensus 70 ~~~ikV~vRvRP~~~~E~~~~~~~~v~~~~-~~~ii~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~asQ 148 (409)
..||+|+|||||++.+|.......+|.+++ ++-|.+..... . ..-.+.|+||+||||++.|
T Consensus 48 ~~NIqVivRcRp~n~~E~~~~s~~VVs~~~~~kEV~v~~~~~--s----------------k~~~k~ftFDkVFGpes~Q 109 (1041)
T KOG0243|consen 48 EVNIQVIVRCRPRNDRERKSKSSVVVSCDGIRKEVAVRQTIA--S----------------KQIDKTFTFDKVFGPESQQ 109 (1041)
T ss_pred CCceEEEEEeCCCCchhhhcCCCeEEecCCCcceEEEecccc--c----------------ccccceeecceeeCcchhH
Confidence 469999999999999999888899999988 44354433211 0 1245689999999999999
Q ss_pred hhhhccchHHHHHHHhcCcceEEEeeccCCCCceeeecC--------CCCCCchhhhhhhhhhHHHhhhhce-------e
Q psy4062 149 QDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLG--------NENHKGIMYLTMGIRNRVSALTRQM-------C 213 (409)
Q Consensus 149 ~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G--------~~~~~GIi~~~~~~~~lf~~~~~~~-------s 213 (409)
++||+.++.|+|+.|+.|||||||||||||+||||||.| .+.++|||||++.+ +|+.++... |
T Consensus 110 ~d~Y~~~v~p~i~eVl~GyNCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRal~~--IFd~Le~~~~EYsvKVS 187 (1041)
T KOG0243|consen 110 EDLYDQAVSPIIKEVLEGYNCTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPRALRQ--IFDTLEAQGAEYSVKVS 187 (1041)
T ss_pred HHHHHHHHHHHHHHHhccCCceEEEecCCCCCceeeeecCcccccCCCCccCCcchHHHHH--HHHHHHhcCCeEEEEEE
Confidence 999999999999999999999999999999999999999 57789999999999 999998765 9
Q ss_pred EEEEEeceeeEe------------------------------------------------------------ecCcccce
Q psy4062 214 TMRMYKTCLILR------------------------------------------------------------RKPSICEK 233 (409)
Q Consensus 214 ~~eiy~~~~~~~------------------------------------------------------------~~~ssrsh 233 (409)
|+|+|++.+.|+ +..|||||
T Consensus 188 fLELYNEEl~DLLa~~~~~~~~~~~k~~~~~~~~kggV~vkGlEEi~V~~A~ei~klLekGs~kRrtAaTl~N~~SSRSH 267 (1041)
T KOG0243|consen 188 FLELYNEELTDLLASEDTSDKKLRIKDDSTIVDGKGGVIVKGLEEIIVTNADEIYKLLEKGSKKRRTAATLMNDQSSRSH 267 (1041)
T ss_pred ehhhhhHHHHHhcCCccccccccccccCCcccCCcCcEEEecceeeeecchhHHHHHHHhhhhHhHHHHHHhhhhccccc
Confidence 999998777765 34599999
Q ss_pred eeEEEEEEeeccc---cceeEEeEEEEeecCCcccccccCCccchhhhhcccchhHHHHHHHHHHHhcCCCCcccCCchh
Q psy4062 234 MQLMVYVKMQDKA---TKQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLADGCRHVPYRDSKL 310 (409)
Q Consensus 234 ~i~~i~v~~~~~~---~~~~~~skL~~VDLAGSEr~~~~~~~~~r~~E~~~IN~SL~aL~~vI~aL~~~~~~iPyRdSkL 310 (409)
.+|+|+|.....+ .+-++.|||+||||||||.++++|+.+.|.+|+..||+||++||+||+||.+...|||||+|||
T Consensus 268 sIFsItvhike~t~~geelvK~GKLNLVDLAGSENI~RSGA~~~RArEAG~INqSLLTLGRVInALVe~s~HIPYRESKL 347 (1041)
T KOG0243|consen 268 SIFSITVHIKENTPEGEELVKIGKLNLVDLAGSENISRSGARNGRAREAGEINQSLLTLGRVINALVEHSGHIPYRESKL 347 (1041)
T ss_pred eEEEEEEEEecCCCcchhhHhhcccceeeccccccccccccccchhHHhhhhhHHHHHHHHHHHHHHccCCCCCchHHHH
Confidence 9999999766544 4568899999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhhhccCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHHhcCcccceeeccCCchhhhhhhhCCcCCcccccccccCCc
Q psy4062 311 TRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKIKAKVSRTFKSGAHFKLEYLTGGVSKHCRPAVGRRGKS 390 (409)
Q Consensus 311 T~LLk~sLgGn~~t~~I~~isP~~~~~~eTl~TL~fa~rak~Ik~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (409)
||||||+|||..||+|||||||+..+++||++||.||.|||+|+|+|.+|+.-.....++-+..+++.+.+.....|.|-
T Consensus 348 TRLLQDSLGGkTKT~iIATiSPa~~~lEETlSTLEYA~RAKnIkNKPevNQkl~K~~llKd~~~EIerLK~dl~AaReKn 427 (1041)
T KOG0243|consen 348 TRLLQDSLGGKTKTCIIATISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQKLMKKTLLKDLYEEIERLKRDLAAAREKN 427 (1041)
T ss_pred HHHHHHHhCCCceeEEEEEeCCCcccHHHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhhC
Confidence 99999999999999999999999999999999999999999999999999776666666666777877766555555443
Q ss_pred -ccccc
Q psy4062 391 -VWTCQ 395 (409)
Q Consensus 391 -~~~~~ 395 (409)
.|-.+
T Consensus 428 Gvyise 433 (1041)
T KOG0243|consen 428 GVYISE 433 (1041)
T ss_pred ceEech
Confidence 45333
No 2
>KOG4280|consensus
Probab=100.00 E-value=2.9e-74 Score=593.90 Aligned_cols=279 Identities=36% Similarity=0.568 Sum_probs=247.1
Q ss_pred CCCeEEEEEeCCCCChhhccCCceEEEEeCCcEE--EeCCCCCCCcceeeccccchhhccccCCCceeEeeceEeCCCCC
Q psy4062 70 QSHMKVYIRVRPQSQKEEDGCHREIVKILNRDTI--IFDPKQDDSEFFFHGVKQSLRDINKKKSKEMEFLFDRVYGPSES 147 (409)
Q Consensus 70 ~~~ikV~vRvRP~~~~E~~~~~~~~v~~~~~~~i--i~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~as 147 (409)
..+++|++|+||++..+...+...++.+...... +.+|.... ....+.|+||.||+++++
T Consensus 4 ~~~v~vvvr~rPl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------------------~~~~~~ftfD~vf~~~st 65 (574)
T KOG4280|consen 4 ACKVKVVVRVRPLSAAERSELLKSILSVDPAHGRVSLKNPVAGI------------------EGKPKSFTFDAVFDSDST 65 (574)
T ss_pred ccceeEEEeecCCCchhhhhhhccccccccccceeeecCCcccc------------------cCCCCCceeeeeecCCCC
Confidence 4579999999999999988888877777665432 22332221 123446999999999999
Q ss_pred chhhhccchHHHHHHHhcCcceEEEeeccCCCCceeeecCC-CCCCchhhhhhhhhhHHHhhhhce---------eEEEE
Q psy4062 148 NQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGN-ENHKGIMYLTMGIRNRVSALTRQM---------CTMRM 217 (409)
Q Consensus 148 Q~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G~-~~~~GIi~~~~~~~~lf~~~~~~~---------s~~ei 217 (409)
|++||+.++.|+|+++++|||+||||||||||||||||.|. ++..|||||++.+ +|..|...+ ||+||
T Consensus 66 Q~dvy~~~~~~lV~svl~GyNgtvFaYGQTGsGKTyTM~G~~~~~~GiiPraf~~--LF~~I~~~~~~~~f~vrvS~lEi 143 (574)
T KOG4280|consen 66 QDDVYQETVAPLVESVLEGYNGTVFAYGQTGSGKTYTMIGPDPELRGLIPRAFEH--LFRHIDERKEKTRFLVRVSYLEI 143 (574)
T ss_pred HHHHHHHHhHHHHHHHhcccCceEEEeccCCCCCceEeeCCChhhCCchhHHHHH--HHHHHHhccccceEEEEeehHHH
Confidence 99999999999999999999999999999999999999999 6778999999999 999998763 99999
Q ss_pred EeceeeEe-----------------------------------------------------ecCcccceeeEEEEEEeec
Q psy4062 218 YKTCLILR-----------------------------------------------------RKPSICEKMQLMVYVKMQD 244 (409)
Q Consensus 218 y~~~~~~~-----------------------------------------------------~~~ssrsh~i~~i~v~~~~ 244 (409)
|++.++|+ +..|+|||++|+++|+...
T Consensus 144 YnE~i~DLL~~~~~~~l~lre~p~~Gv~V~nlse~~v~s~~d~~~~l~~G~~nR~vgat~mn~~SsRSH~ift~~i~~~~ 223 (574)
T KOG4280|consen 144 YNESIRDLLSPVNPKGLELREDPKCGVYVENLSEMDVESAEDAQQLLVVGLANRRVGATSMNEESSRSHAIFTIHIESSE 223 (574)
T ss_pred HhHHHHHHhCccCcCCceeeEcCCCceEecCcceeecCCHHHHHHHHHHHHhhcchhhccCCcccccceEEEEEEEEeec
Confidence 97666554 2348999999999999833
Q ss_pred c---ccceeEEeEEEEeecCCcccccccCCccchhhhhcccchhHHHHHHHHHHHhcCCC-CcccCCchhhHhhhhccCC
Q psy4062 245 K---ATKQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLADGCR-HVPYRDSKLTRILKDSLGG 320 (409)
Q Consensus 245 ~---~~~~~~~skL~~VDLAGSEr~~~~~~~~~r~~E~~~IN~SL~aL~~vI~aL~~~~~-~iPyRdSkLT~LLk~sLgG 320 (409)
. .....+.++|+|||||||||..+++++|+|++|+.+||+||++||+||.+|+++.. ||||||||||+||||+|||
T Consensus 224 ~~~~~~~~~~~~rlnlvDLagsEr~~~tga~G~rlkEa~~IN~SLs~LG~vI~aLvd~~~~HIPYRdSkLT~LLqdSLGG 303 (574)
T KOG4280|consen 224 KSDGGLMSGRSSKLNLVDLAGSERQSKTGAEGERLKEATNINLSLSALGNVISALVDGSKTHIPYRDSKLTRLLQDSLGG 303 (574)
T ss_pred ccCCCccccccceeeeeeccchhhhcccCccchhhhhhcccchhHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHcCC
Confidence 2 25577889999999999999999999999999999999999999999999999986 9999999999999999999
Q ss_pred CccEEEEEEeCCCCCCHHHHHHHHHHHHHHhcCcccceeeccCCchhh
Q psy4062 321 NCKTVMIANIAPTALSYEDSYNTLKYATRAKKIKAKVSRTFKSGAHFK 368 (409)
Q Consensus 321 n~~t~~I~~isP~~~~~~eTl~TL~fa~rak~Ik~~~~~n~~~~~~~~ 368 (409)
||+|+|||||+|+..+++||++||+||+|||.|+|+|.+|.+..+...
T Consensus 304 N~kT~mianvsp~~~~~~ETlsTLrfA~Rak~I~nk~~ined~~~~~~ 351 (574)
T KOG4280|consen 304 NSKTTMIANVSPSSDNYEETLSTLRFAQRAKAIKNKPVINEDPKDALL 351 (574)
T ss_pred CceEEEEEecCchhhhhHHHHHHHHHHHHHHHhhccccccCCcchhhH
Confidence 999999999999999999999999999999999999999999986543
No 3
>KOG0245|consensus
Probab=100.00 E-value=7.8e-74 Score=604.11 Aligned_cols=277 Identities=35% Similarity=0.550 Sum_probs=251.3
Q ss_pred CCCeEEEEEeCCCCChhhccCCceEEEEeCCcEEEeCCCCCCCcceeeccccchhhccccCCCceeEeeceEeCC-----
Q psy4062 70 QSHMKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKSKEMEFLFDRVYGP----- 144 (409)
Q Consensus 70 ~~~ikV~vRvRP~~~~E~~~~~~~~v~~~~~~~ii~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~----- 144 (409)
..+|+|+|||||++.+|.......+|.+.++.+.+..|+... ....|+||+.||.
T Consensus 3 ~ssv~VAVRVRPfn~rE~s~~~k~Vvqm~gn~ttii~~~~~k--------------------~~~~FtfD~SYWS~d~ed 62 (1221)
T KOG0245|consen 3 GSSVKVAVRVRPFNAREKSRDAKCVVQMQGNTTTIINPKGSK--------------------DAPKFTFDYSYWSHDSED 62 (1221)
T ss_pred CCceEEEEEeccchhhhhhcccceEEEecCCceeeecCCCcc--------------------cCCceecceeeecCCCCC
Confidence 468999999999999999988999999999988777765432 2234999999975
Q ss_pred --CCCchhhhccchHHHHHHHhcCcceEEEeeccCCCCceeeecCCC--CCCchhhhhhhhhhHHHhhhhce--------
Q psy4062 145 --SESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGNE--NHKGIMYLTMGIRNRVSALTRQM-------- 212 (409)
Q Consensus 145 --~asQ~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G~~--~~~GIi~~~~~~~~lf~~~~~~~-------- 212 (409)
.++|..||+.++.++|+++|+|||+||||||||||||||||+|.. +++||||+++++ ||.++...+
T Consensus 63 PhfAsQ~qVYedlg~~mL~~AfEGYN~ClFAYGQTGSGKSYTMMG~~~~~e~GIIPrlCEe--LF~ri~~nq~~~~sy~V 140 (1221)
T KOG0245|consen 63 PHFASQKQVYEDLGREMLDHAFEGYNVCLFAYGQTGSGKSYTMMGFQEPDEPGIIPRLCEE--LFSRIADNQSQQMSYSV 140 (1221)
T ss_pred CchhhHHHHHHHHhHHHHHHHhcccceEEEEeccCCCCcceeeeccCCCCCCCchhHHHHH--HHHHHhhcccccceEEE
Confidence 478999999999999999999999999999999999999999987 899999999999 999998755
Q ss_pred --eEEEEEeceeeEe------------------------------------------------------ecCcccceeeE
Q psy4062 213 --CTMRMYKTCLILR------------------------------------------------------RKPSICEKMQL 236 (409)
Q Consensus 213 --s~~eiy~~~~~~~------------------------------------------------------~~~ssrsh~i~ 236 (409)
||+|||++.+.|+ +..|||||++|
T Consensus 141 evSymEIYcErVrDLL~~p~~kg~LRVREHP~lGPYVedLS~~aV~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVF 220 (1221)
T KOG0245|consen 141 EVSYMEIYCERVRDLLNAPKSKGGLRVREHPILGPYVEDLSKLAVTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVF 220 (1221)
T ss_pred EEeehhHHHHHHHHHhhCCCCCCCceeeccCccChhHhHhhhcccccHHHHHHHHHhcchhhhhhhhccccccccceeEE
Confidence 9999997766654 34599999999
Q ss_pred EEEEEeeccc----cceeEEeEEEEeecCCcccccccCCccchhhhhcccchhHHHHHHHHHHHhcCC-------CCccc
Q psy4062 237 MVYVKMQDKA----TKQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLADGC-------RHVPY 305 (409)
Q Consensus 237 ~i~v~~~~~~----~~~~~~skL~~VDLAGSEr~~~~~~~~~r~~E~~~IN~SL~aL~~vI~aL~~~~-------~~iPy 305 (409)
+|...+.... -...+.|||+|||||||||++.++++|+|++||++|||||.+||+||.||++.+ .+|||
T Consensus 221 tIvftQk~~~~~~~l~sek~SKIsLVDLAGSERasstGa~G~RLKEGa~INKSLtTLGkVISALAe~~~~k~~ks~fIPY 300 (1221)
T KOG0245|consen 221 TIVFTQKKHDQDTGLDSEKVSKISLVDLAGSERASSTGANGDRLKEGANINKSLTTLGKVISALAESQKGKKKKSDFIPY 300 (1221)
T ss_pred EEEEEeeeccccCCCcceeeeeeeEEeccCcccccccCCCccchhcccccchHHHHHHHHHHHHHHHhccCCCCCccccc
Confidence 9999876544 336789999999999999999999999999999999999999999999998754 48999
Q ss_pred CCchhhHhhhhccCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHHhcCcccceeeccCCchhh
Q psy4062 306 RDSKLTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKIKAKVSRTFKSGAHFK 368 (409)
Q Consensus 306 RdSkLT~LLk~sLgGn~~t~~I~~isP~~~~~~eTl~TL~fa~rak~Ik~~~~~n~~~~~~~~ 368 (409)
|||.|||||++.||||+||+|||+|||++.||+|||+|||||.|||.|+|++++|.+..+...
T Consensus 301 RDSVLTWLLkEnLGGNSKTaMIAAlSPAdiNyeETLSTLRYAdRAK~Iv~~avVNEdpnaKLI 363 (1221)
T KOG0245|consen 301 RDSVLTWLLKENLGGNSKTAMIAALSPADINYEETLSTLRYADRAKQIVNNAVVNEDPNAKLI 363 (1221)
T ss_pred hHHHHHHHHHHhcCCcchhhhhhccChhhcChHHHHHHHHHhhHhhhhhccceeCCCccHHHH
Confidence 999999999999999999999999999999999999999999999999999999998888753
No 4
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=3.3e-71 Score=553.21 Aligned_cols=271 Identities=48% Similarity=0.834 Sum_probs=246.6
Q ss_pred CeEEEEEeCCCCChhhccCCceEEEEeCCcEEEeCCCCCCCcceeeccccchhhccccCCCceeEeeceEeCCCCCchhh
Q psy4062 72 HMKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKSKEMEFLFDRVYGPSESNQDV 151 (409)
Q Consensus 72 ~ikV~vRvRP~~~~E~~~~~~~~v~~~~~~~ii~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~asQ~eV 151 (409)
+|+|||||||+.+.|...+...+|.+.++++++++|+...... +.........+.|.||+||+++++|++|
T Consensus 1 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~---------~~~~~~~~~~~~f~Fd~vf~~~~~q~~v 71 (338)
T cd01370 1 SLTVAVRVRPFNEKEKQEGTRRVVKVVDDRMLVFDPKDEEDAF---------RNLRARRNKELKYSFDRVFDETSTQEEV 71 (338)
T ss_pred CeEEEEEcCCCChhhhhcCCceEEEEcCCCEEEEcCCcccccc---------cchhcccCCceEEEeccccCCCCCHHHH
Confidence 5899999999999999899999999999999999887653221 0111123456789999999999999999
Q ss_pred hccchHHHHHHHhcCcceEEEeeccCCCCceeeecCCCCCCchhhhhhhhhhHHHhhhhce---------eEEEEEecee
Q psy4062 152 YDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGNENHKGIMYLTMGIRNRVSALTRQM---------CTMRMYKTCL 222 (409)
Q Consensus 152 f~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G~~~~~GIi~~~~~~~~lf~~~~~~~---------s~~eiy~~~~ 222 (409)
|+.+++|+|+++++|||+||||||||||||||||+|+++++||+|+++.+ +|+.+.... |++|||++.+
T Consensus 72 f~~~~~plv~~~~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Giipr~~~~--LF~~i~~~~~~~~~~v~vS~~EIyne~v 149 (338)
T cd01370 72 YENTTKPLVDGVLNGYNATVFAYGATGAGKTHTMLGTDSDPGLMVLTMKD--LFDKIEERKDDKEFEVSLSYLEIYNETI 149 (338)
T ss_pred HHHHHHHHHHHHHCCCCceEEeeCCCCCCCeEEEcCCCCCCchHHHHHHH--HHHhhhhcccCceEEEEEEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999999999 999887543 9999999998
Q ss_pred eEe----------------------------------------------------ecCcccceeeEEEEEEeeccc---c
Q psy4062 223 ILR----------------------------------------------------RKPSICEKMQLMVYVKMQDKA---T 247 (409)
Q Consensus 223 ~~~----------------------------------------------------~~~ssrsh~i~~i~v~~~~~~---~ 247 (409)
+|+ +..|+|||++|++++.+.+.. .
T Consensus 150 ~DLL~~~~~~l~i~ed~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~i~~~~~~~~~~ 229 (338)
T cd01370 150 RDLLSPSSGPLELREDPNQGIVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQITVRQKDRTASIN 229 (338)
T ss_pred EECCCCCCCCceEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccccccCccCcceEEEEEEEEEEecCCCCC
Confidence 887 234889999999999988765 5
Q ss_pred ceeEEeEEEEeecCCcccccccCCccchhhhhcccchhHHHHHHHHHHHhcCC---CCcccCCchhhHhhhhccCCCccE
Q psy4062 248 KQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLADGC---RHVPYRDSKLTRILKDSLGGNCKT 324 (409)
Q Consensus 248 ~~~~~skL~~VDLAGSEr~~~~~~~~~r~~E~~~IN~SL~aL~~vI~aL~~~~---~~iPyRdSkLT~LLk~sLgGn~~t 324 (409)
.....++|+|||||||||..+++..|.+++|+..||+||++|++||.+|++++ .||||||||||+||+|+|||||+|
T Consensus 230 ~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~~L~~~~~~~~~ipyR~SkLT~lL~d~Lggn~~t 309 (338)
T cd01370 230 QQVRIGKLSLIDLAGSERASATNNRGQRLKEGANINRSLLALGNCINALVDGKKKNKHIPYRDSKLTRLLKDSLGGNCKT 309 (338)
T ss_pred CcEEEEEEEEEECCCCccccccCCCCccccccchhhHHHHHHHHHHHHHHhccCCCCcCCCcCCHHHHHHHHhcCCCCeE
Confidence 66788999999999999999999999999999999999999999999999988 899999999999999999999999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHHhcC
Q psy4062 325 VMIANIAPTALSYEDSYNTLKYATRAKKI 353 (409)
Q Consensus 325 ~~I~~isP~~~~~~eTl~TL~fa~rak~I 353 (409)
+||+||||+..+++||++||+||+|||+|
T Consensus 310 ~~I~~vsp~~~~~~eTl~TL~fa~ra~~I 338 (338)
T cd01370 310 VMIANISPSSSHYEETHNTLKYANRAKNI 338 (338)
T ss_pred EEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999987
No 5
>KOG0242|consensus
Probab=100.00 E-value=1.9e-70 Score=584.14 Aligned_cols=286 Identities=40% Similarity=0.637 Sum_probs=255.3
Q ss_pred CCCeEEEEEeCCCCChhhccCCceEEEEeCCcEEEeCCCCCCCcceeeccccchhhccccCCCceeEeeceEeCCCCCch
Q psy4062 70 QSHMKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKSKEMEFLFDRVYGPSESNQ 149 (409)
Q Consensus 70 ~~~ikV~vRvRP~~~~E~~~~~~~~v~~~~~~~ii~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~asQ~ 149 (409)
...|.|+|||||+++.+...+....+.+.++..+.......... ...+..|.||+||+++++|+
T Consensus 5 ~~~i~V~vrvRP~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~----------------~~~~~~y~FD~VF~~~~t~~ 68 (675)
T KOG0242|consen 5 EEKILVSVRVRPLNEREDARGDRSDWHCINDTTLFKRVTKSLPE----------------KSKPEKYEFDRVFGEESTQE 68 (675)
T ss_pred cceeEEEEEeCCCCccccccCCccceEecCCceeEeeccccccc----------------cccccceeeeeecCCCCCHH
Confidence 45799999999999987666777777777777665443222111 11256899999999999999
Q ss_pred hhhccchHHHHHHHhcCcceEEEeeccCCCCceeeecCCCCCCchhhhhhhhhhHHHhhhhce--------eEEEEEece
Q psy4062 150 DVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGNENHKGIMYLTMGIRNRVSALTRQM--------CTMRMYKTC 221 (409)
Q Consensus 150 eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G~~~~~GIi~~~~~~~~lf~~~~~~~--------s~~eiy~~~ 221 (409)
+||+.+++|+|+++++|||+||||||||||||||||.|.+++|||||+++.+ +|+.+.... ||+|||++.
T Consensus 69 ~VYe~~tkpiv~~~l~G~N~TVFAYG~TgSGKTyTM~G~~~~PGii~la~~d--if~~I~~~~~r~f~v~vSYlEIYNE~ 146 (675)
T KOG0242|consen 69 DVYERTTKPLLLSVLEGFNATVFAYGQTGSGKTYTMSGSEDDPGIIPLAMKD--IFEKIDKSGEREFSVRVSYLEIYNER 146 (675)
T ss_pred HHHHhccHHHHHHHhcCcccceeeecCCCCCCceEEeccCCCCCeeehHHHH--HHHHHHhcCCceeEEEEEEEEEeccc
Confidence 9999999999999999999999999999999999999999999999999999 999987744 999999998
Q ss_pred eeEe----------------------------------------------------ecCcccceeeEEEEEEeeccccce
Q psy4062 222 LILR----------------------------------------------------RKPSICEKMQLMVYVKMQDKATKQ 249 (409)
Q Consensus 222 ~~~~----------------------------------------------------~~~ssrsh~i~~i~v~~~~~~~~~ 249 (409)
++|+ +..|||||++|+|.+.........
T Consensus 147 I~DLL~~~~~~L~irED~~~gi~V~gL~e~~v~s~e~~~~ll~~g~~~R~~g~T~~N~~SSRSHaIl~i~i~s~~~~~~~ 226 (675)
T KOG0242|consen 147 IRDLLNPDGGDLRLREDSEGGIVVPGLTEETVSSREELLELLQKGNKNRTTGETNLNEQSSRSHAILRITVESRGREASS 226 (675)
T ss_pred cccccCCCCCCceEeEcCCCCEEecCCeeecCCCHHHHHHHHHHhhccCcccccccccccchhhheeeEEEEeccccccc
Confidence 8886 335899999999999988876443
Q ss_pred eEEeEEEEeecCCcccccccCCccchhhhhcccchhHHHHHHHHHHHhcCC--CCcccCCchhhHhhhhccCCCccEEEE
Q psy4062 250 MKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLADGC--RHVPYRDSKLTRILKDSLGGNCKTVMI 327 (409)
Q Consensus 250 ~~~skL~~VDLAGSEr~~~~~~~~~r~~E~~~IN~SL~aL~~vI~aL~~~~--~~iPyRdSkLT~LLk~sLgGn~~t~~I 327 (409)
..++|+|||||||||+.++++.|.|++||.+||+||++||+||++|+++. .||||||||||||||++|||||+|+||
T Consensus 227 -~~s~L~lIDLAGSERas~T~~~G~RlkEG~~INrSLlaLgtVI~~Ls~~~~~~hipYRDSKLTRiLq~sLgGn~rt~~I 305 (675)
T KOG0242|consen 227 -RVSKLNLIDLAGSERASRTGNEGVRLKEGAHINRSLLALGTVINKLSEGKRPRHIPYRDSKLTRLLQDSLGGNARTAII 305 (675)
T ss_pred -hhheehhhhhhhhhhhhhhhccceeccccchhhHHHHHHHHHHHHHccccccCCCCccccHHHHhchhhcCCCccEEEE
Confidence 77899999999999999999999999999999999999999999999983 789999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHHhcCcccceeeccCCchhhhhhhhC
Q psy4062 328 ANIAPTALSYEDSYNTLKYATRAKKIKAKVSRTFKSGAHFKLEYLTG 374 (409)
Q Consensus 328 ~~isP~~~~~~eTl~TL~fa~rak~Ik~~~~~n~~~~~~~~~~~~~~ 374 (409)
|||+|+..+|+||.+||+||+|||+|++++.+|+...+.....|+..
T Consensus 306 ~tisp~~~~~~eT~nTL~fAsrak~i~~~~~~n~~~~~~~~~~~~~~ 352 (675)
T KOG0242|consen 306 ATISPSSSHYEETKNTLKFASRAKEITTKAQVNVILSDKALLKYLQR 352 (675)
T ss_pred EEeCchhhHHHHHHHHHHHHHHhhhcccccccceecchhhhhHHHHH
Confidence 99999999999999999999999999999999999999888777733
No 6
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=4.1e-69 Score=537.90 Aligned_cols=258 Identities=37% Similarity=0.611 Sum_probs=230.0
Q ss_pred CCeEEEEEeCCCCChhhccCCceEEEEeCCcEEEeCCCCCCCcceeeccccchhhccccCCCceeEeeceEeCCCCCchh
Q psy4062 71 SHMKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKSKEMEFLFDRVYGPSESNQD 150 (409)
Q Consensus 71 ~~ikV~vRvRP~~~~E~~~~~~~~v~~~~~~~ii~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~asQ~e 150 (409)
++|+|+|||||+...|...+...++...+++++++... ..+.|.||+||+++++|++
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~~~~~~~-----------------------~~~~f~FD~vf~~~~~q~~ 57 (337)
T cd01373 1 PAVKVVVRIRPPNEIEADGGQGQCLKKLSSDTLVWHSH-----------------------PPRMFTFDHVADSNTNQED 57 (337)
T ss_pred CCeEEEEEcCcCChhhcccCCCeEEEEcCCCcEEeeCC-----------------------CCcEEeCCeEeCCCCCHHH
Confidence 37999999999999998777777887776666554321 1347999999999999999
Q ss_pred hhccchHHHHHHHhcCcceEEEeeccCCCCceeeecCCCC--------CCchhhhhhhhhhHHHhhhhc-----------
Q psy4062 151 VYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGNEN--------HKGIMYLTMGIRNRVSALTRQ----------- 211 (409)
Q Consensus 151 Vf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G~~~--------~~GIi~~~~~~~~lf~~~~~~----------- 211 (409)
||+.++.|+|+++++|||+||||||||||||||||+|+.. ++||+|+++++ +|..+...
T Consensus 58 vy~~~~~p~v~~~~~G~n~ti~aYGqTGSGKTyTm~G~~~~~~~~~~~~~Giipr~~~~--Lf~~i~~~~~~~~~~~~~~ 135 (337)
T cd01373 58 VFQSVGKPLVEDCLSGYNGSIFAYGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEY--LFSLIQREEEKRGDGLKFL 135 (337)
T ss_pred HHHHHHHHHHHHHhCCCceeEEEeCCCCCCceEEecCCCCccccccccCCCHHHHHHHH--HHHHHHhhhhhcccCceEE
Confidence 9999999999999999999999999999999999999753 67999999999 99887543
Q ss_pred --eeEEEEEeceeeEe----------------------------------------------------ecCcccceeeEE
Q psy4062 212 --MCTMRMYKTCLILR----------------------------------------------------RKPSICEKMQLM 237 (409)
Q Consensus 212 --~s~~eiy~~~~~~~----------------------------------------------------~~~ssrsh~i~~ 237 (409)
.||+|||++.++|+ +..|+|||++|+
T Consensus 136 v~~S~~EIyne~v~DLL~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~ 215 (337)
T cd01373 136 CKCSFLEIYNEQITDLLDPTSRNLKIREDIKKGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFT 215 (337)
T ss_pred EEEEEEeecCCEeeeCCCCCCCCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhccCcccCcCCCCCCCccEEEE
Confidence 28999999999887 234899999999
Q ss_pred EEEEeecccc--ceeEEeEEEEeecCCcccccccCCccchhhhhcccchhHHHHHHHHHHHhc----CCCCcccCCchhh
Q psy4062 238 VYVKMQDKAT--KQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLAD----GCRHVPYRDSKLT 311 (409)
Q Consensus 238 i~v~~~~~~~--~~~~~skL~~VDLAGSEr~~~~~~~~~r~~E~~~IN~SL~aL~~vI~aL~~----~~~~iPyRdSkLT 311 (409)
+.+....... .....++|+|||||||||..++++.|.+++|+..||+||++|++||.+|++ +..||||||||||
T Consensus 216 i~v~~~~~~~~~~~~~~s~l~~VDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~aL~~~~~~~~~~ipyR~SkLT 295 (337)
T cd01373 216 CTIESWEKKASSTNIRTSRLNLVDLAGSERQKDDGAEGVRLKEAKNINKSLSTLGHVIMALVDVAHGKQRHVPYRDSKLT 295 (337)
T ss_pred EEEEEeecCCCCCcEEEEEEEEEECCCCCcccccCCccHhhhhhccccHHHHHHHHHHHHHHhhccCCCCccCCcccHHH
Confidence 9998765442 346789999999999999999999999999999999999999999999985 3589999999999
Q ss_pred HhhhhccCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHHhcC
Q psy4062 312 RILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKI 353 (409)
Q Consensus 312 ~LLk~sLgGn~~t~~I~~isP~~~~~~eTl~TL~fa~rak~I 353 (409)
+||+|+|||||+|+||+||||+..+++||++||+||+|||.|
T Consensus 296 ~lL~dsLggns~t~~I~~vsP~~~~~~eTl~TL~fa~rak~I 337 (337)
T cd01373 296 FLLRDSLGGNAKTTIIANVSPSSKCFGETLSTLKFAQRAKLI 337 (337)
T ss_pred HHHHHhcCCCceEEEEEEECCCcccHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999999999987
No 7
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=7.2e-69 Score=537.60 Aligned_cols=270 Identities=30% Similarity=0.555 Sum_probs=240.3
Q ss_pred CCeEEEEEeCCCCChhhccCCceEEEEeCCcEEEeCCCCCCCcceeeccccchhhccccCCCceeEeeceEeCCCCCchh
Q psy4062 71 SHMKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKSKEMEFLFDRVYGPSESNQD 150 (409)
Q Consensus 71 ~~ikV~vRvRP~~~~E~~~~~~~~v~~~~~~~ii~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~asQ~e 150 (409)
++|+|||||||+.+.|...+...+|.+.++++++++++...... .........++.|.||+||+++++|++
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~---------~~~~~~~~~~~~f~Fd~vf~~~~tq~~ 71 (345)
T cd01368 1 DPVKVYLRVRPLSKDELESEDEGCIEVINSTTIQLHPPKGSAAR---------KSERNGGQKETKFSFSKVFGPNTTQKE 71 (345)
T ss_pred CCEEEEEEeCcCCchhhccCCCceEEEcCCCEEEEeCCcccccc---------ccccccCCCceEeecCeEECCCCCHHH
Confidence 37999999999999998888899999999998888776543210 001112346778999999999999999
Q ss_pred hhccchHHHHHHHhcCcceEEEeeccCCCCceeeecCCCCCCchhhhhhhhhhHHHhhhhce---eEEEEEeceeeEe--
Q psy4062 151 VYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGNENHKGIMYLTMGIRNRVSALTRQM---CTMRMYKTCLILR-- 225 (409)
Q Consensus 151 Vf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G~~~~~GIi~~~~~~~~lf~~~~~~~---s~~eiy~~~~~~~-- 225 (409)
||+.++.|+|+++++|||+||||||||||||||||+|++.++||+||++.+ +|+.+.... ||+|||++.++|+
T Consensus 72 vy~~~~~p~v~~~l~G~n~ti~aYGqtGSGKTyTm~G~~~~~Gli~r~~~~--lF~~~~~~~v~~S~~EIyne~v~DLL~ 149 (345)
T cd01368 72 FFEGTALPLVQDLLKGKNSLLFTYGVTNSGKTYTMQGSPGDGGILPRSLDV--IFNSIGGYSVFVSYVEIYNNYIYDLLE 149 (345)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEeCCCCCCCeEEecCCCCCCchHHHHHHH--HHHHHHheeEEEEEEEEeCCEeEeCCC
Confidence 999999999999999999999999999999999999999999999999999 998876533 9999999888876
Q ss_pred --------------------------------------------------------ecCcccceeeEEEEEEeeccc---
Q psy4062 226 --------------------------------------------------------RKPSICEKMQLMVYVKMQDKA--- 246 (409)
Q Consensus 226 --------------------------------------------------------~~~ssrsh~i~~i~v~~~~~~--- 246 (409)
+..|+|||++|++++.+....
T Consensus 150 ~~~~~~~~~~~l~i~ed~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~i~~i~v~~~~~~~~~ 229 (345)
T cd01368 150 DSPSSTKKRQSLRLREDHNGNMYVAGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFTIKLVQAPGDSDG 229 (345)
T ss_pred CccccccCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhccceeccccCcCCCCCceEEEEEEEEEeccCccc
Confidence 234899999999999876653
Q ss_pred -----cceeEEeEEEEeecCCcccccccCCccchhhhhcccchhHHHHHHHHHHHhc------CCCCcccCCchhhHhhh
Q psy4062 247 -----TKQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLAD------GCRHVPYRDSKLTRILK 315 (409)
Q Consensus 247 -----~~~~~~skL~~VDLAGSEr~~~~~~~~~r~~E~~~IN~SL~aL~~vI~aL~~------~~~~iPyRdSkLT~LLk 315 (409)
......++|+|||||||||..++++.|++++|+..||+||++|++||++|++ ...||||||||||+||+
T Consensus 230 ~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~aL~~vi~aL~~~~~~~~~~~~iPyR~SkLT~lL~ 309 (345)
T cd01368 230 DVDQDKDQITVSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGKCIEVLRENQLSGSTNKMVPYRDSKLTHLFQ 309 (345)
T ss_pred ccccCCCceEEEEEEEEecccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhcccCCCCcCCCcCCHHHHHHH
Confidence 2567789999999999999999999999999999999999999999999987 45899999999999999
Q ss_pred hccCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHHh
Q psy4062 316 DSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAK 351 (409)
Q Consensus 316 ~sLgGn~~t~~I~~isP~~~~~~eTl~TL~fa~rak 351 (409)
|+|||||+|+||+||||...+++||++||+||++|+
T Consensus 310 ~~l~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~a~ 345 (345)
T cd01368 310 NYFDGEGKARMIVNVNPCASDYDETLHVMKFSAIAQ 345 (345)
T ss_pred HhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999985
No 8
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=4e-68 Score=534.61 Aligned_cols=272 Identities=37% Similarity=0.590 Sum_probs=245.2
Q ss_pred CCeEEEEEeCCCCChhhccCCceEEEEeCCcEEEeCCCCCCCcceeeccccchhhccccCCCceeEeeceEeCCC-----
Q psy4062 71 SHMKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKSKEMEFLFDRVYGPS----- 145 (409)
Q Consensus 71 ~~ikV~vRvRP~~~~E~~~~~~~~v~~~~~~~ii~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~----- 145 (409)
++|+|+||+||++..|...+...++.+.++.+.+.+|..... .......|.||+||+++
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~v~v~~~~~~~~----------------~~~~~~~f~FD~vf~~~~~~~~ 64 (356)
T cd01365 1 ANVKVAVRVRPFNSREKNRGSKCIVQMPGKVTTLKNPKAADA----------------TRKKPKSFSFDHSYWSHDSEDP 64 (356)
T ss_pred CCEEEEEEeCcCChhhhccCCceEEEECCCEEEEEcCCcccc----------------cccCceEEECCeEecccCCCCC
Confidence 479999999999999998899999999997777766653211 12345689999999998
Q ss_pred --CCchhhhccchHHHHHHHhcCcceEEEeeccCCCCceeeecCCCCCCchhhhhhhhhhHHHhhhhc----------ee
Q psy4062 146 --ESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGNENHKGIMYLTMGIRNRVSALTRQ----------MC 213 (409)
Q Consensus 146 --asQ~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G~~~~~GIi~~~~~~~~lf~~~~~~----------~s 213 (409)
++|++||+.++.|+|+++++|+|+||||||||||||||||+|+..++||+||++.+ +|+.+... .|
T Consensus 65 ~~~tq~~vf~~~~~p~v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~~~~~Gli~r~~~~--Lf~~~~~~~~~~~~~~v~~S 142 (356)
T cd01365 65 HYASQEDVFEDLGRELLDHAFEGYNVCLFAYGQTGSGKSYTMMGYKEEKGIIPRLCEE--LFQRIESKKEQNLSYEVEVS 142 (356)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCCeEEecCCCCCCchHHHHHHH--HHHHHhhccccCceEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999 99887643 28
Q ss_pred EEEEEeceeeEe-------------------------------------------------------ecCcccceeeEEE
Q psy4062 214 TMRMYKTCLILR-------------------------------------------------------RKPSICEKMQLMV 238 (409)
Q Consensus 214 ~~eiy~~~~~~~-------------------------------------------------------~~~ssrsh~i~~i 238 (409)
++|||++.++|+ +..++|||++|++
T Consensus 143 ~~EIy~e~v~DLL~~~~~~~~~l~i~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~l 222 (356)
T cd01365 143 YMEIYNEKVRDLLNPKKKNKGNLKVREHPVLGPYVEDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVFTI 222 (356)
T ss_pred EEEEECCeeeeCCCCCccCCcCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhcccccCCCCCCCcCCceEEEEE
Confidence 999999988886 2247899999999
Q ss_pred EEEeeccc----cceeEEeEEEEeecCCcccccccCCccchhhhhcccchhHHHHHHHHHHHhcC--------CCCcccC
Q psy4062 239 YVKMQDKA----TKQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLADG--------CRHVPYR 306 (409)
Q Consensus 239 ~v~~~~~~----~~~~~~skL~~VDLAGSEr~~~~~~~~~r~~E~~~IN~SL~aL~~vI~aL~~~--------~~~iPyR 306 (409)
.+.+.... ......++|+|||||||||..+++..+++++|+..||+||++|++||.+|+.. ..|||||
T Consensus 223 ~v~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~E~~~IN~SL~aL~~vi~~l~~~~~~~~~~~~~~ipyR 302 (356)
T cd01365 223 VLTQKKLDKETDLTTEKVSKISLVDLAGSERASSTGAEGDRLKEGSNINKSLTTLGKVISALADNSSAKSKKKSSFIPYR 302 (356)
T ss_pred EEEEEecccCCCCCceEEEEEEeeecccccccccccccchhhHHHHHHhHHHHHHHHHHHHHHhcccccccCCCCcCCCc
Confidence 99876644 45677899999999999999999999999999999999999999999999864 4899999
Q ss_pred CchhhHhhhhccCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHHhcCcccceee
Q psy4062 307 DSKLTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKIKAKVSRT 360 (409)
Q Consensus 307 dSkLT~LLk~sLgGn~~t~~I~~isP~~~~~~eTl~TL~fa~rak~Ik~~~~~n 360 (409)
|||||+||+++||||++|+||+||||...+++||++||+||++|++|++.|++|
T Consensus 303 ~SkLT~lL~~~lgg~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~i~~~~~~~ 356 (356)
T cd01365 303 DSVLTWLLKENLGGNSKTAMIATISPADINYEETLSTLRYADRAKKIVNVAVVN 356 (356)
T ss_pred CcHHHHHHHHhcCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccC
Confidence 999999999999999999999999999999999999999999999999999876
No 9
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=3.8e-68 Score=575.07 Aligned_cols=266 Identities=33% Similarity=0.531 Sum_probs=231.3
Q ss_pred CCCCeEEEEEeCCCCChhhccCCceEEEEeCCcEEEeCCCCCCCcceeeccccchhhccccCCCceeEeeceEeCCCCCc
Q psy4062 69 EQSHMKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKSKEMEFLFDRVYGPSESN 148 (409)
Q Consensus 69 ~~~~ikV~vRvRP~~~~E~~~~~~~~v~~~~~~~ii~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~asQ 148 (409)
..++|+|||||||++..|. +.. ++...+++.+.++ ...|.||+||+++++|
T Consensus 96 ~ds~VkV~VRVRPl~~~E~--g~~-iV~~~s~dsl~I~--------------------------~qtFtFD~VFdp~aTQ 146 (1320)
T PLN03188 96 SDSGVKVIVRMKPLNKGEE--GEM-IVQKMSNDSLTIN--------------------------GQTFTFDSIADPESTQ 146 (1320)
T ss_pred CCCCeEEEEEcCCCCCccC--CCe-eEEEcCCCeEEEe--------------------------CcEEeCCeeeCCCCCH
Confidence 3579999999999998853 322 3333333333321 2369999999999999
Q ss_pred hhhhccchHHHHHHHhcCcceEEEeeccCCCCceeeecCCC----------CCCchhhhhhhhhhHHHhhhhc-------
Q psy4062 149 QDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGNE----------NHKGIMYLTMGIRNRVSALTRQ------- 211 (409)
Q Consensus 149 ~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G~~----------~~~GIi~~~~~~~~lf~~~~~~------- 211 (409)
++||+.++.|+|+++++|||+||||||||||||||||+|+. .++|||||++.+ +|..+...
T Consensus 147 edVFe~vv~PLV~svLdGyNaTIFAYGQTGSGKTYTM~G~~~~~~de~~s~~e~GIIPRaled--LF~~I~e~q~k~~d~ 224 (1320)
T PLN03188 147 EDIFQLVGAPLVENCLAGFNSSVFAYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFER--LFARINEEQIKHADR 224 (1320)
T ss_pred HHHHHHHHHHHHHHHhcCCcceeecCCCCCCCCCEeeCCCCCcccccccccccCCchHHHHHH--HHHHHHhhhhhcccc
Confidence 99999999999999999999999999999999999999963 568999999999 99987532
Q ss_pred -------eeEEEEEeceeeEe----------------------------------------------------ecCcccc
Q psy4062 212 -------MCTMRMYKTCLILR----------------------------------------------------RKPSICE 232 (409)
Q Consensus 212 -------~s~~eiy~~~~~~~----------------------------------------------------~~~ssrs 232 (409)
.||+|||++.++|+ +..||||
T Consensus 225 ~~~y~V~vSyLEIYNEkI~DLLsp~~k~L~IRED~kgGv~VeGLTEv~V~S~ED~l~LL~~G~~nR~tasT~mN~~SSRS 304 (1320)
T PLN03188 225 QLKYQCRCSFLEIYNEQITDLLDPSQKNLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRS 304 (1320)
T ss_pred ccceEEEEEEEeeecCcceeccccccCCceEEEcCCCCeEeCCCeEEeCCCHHHHHHHHHHHhccceeccCCCCCccCCC
Confidence 28999999988886 2348999
Q ss_pred eeeEEEEEEeeccc----cceeEEeEEEEeecCCcccccccCCccchhhhhcccchhHHHHHHHHHHHhc-----CCCCc
Q psy4062 233 KMQLMVYVKMQDKA----TKQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLAD-----GCRHV 303 (409)
Q Consensus 233 h~i~~i~v~~~~~~----~~~~~~skL~~VDLAGSEr~~~~~~~~~r~~E~~~IN~SL~aL~~vI~aL~~-----~~~~i 303 (409)
|++|+++|...... ......++|+|||||||||...+++.|.+++|+.+||+||++||+||++|++ ...||
T Consensus 305 HaIFtI~Ves~~k~~~dg~ss~r~SkLnLVDLAGSER~kkTga~G~RLkEA~~INKSLsaLGnVI~ALae~Sq~gk~~HI 384 (1320)
T PLN03188 305 HSVFTCVVESRCKSVADGLSSFKTSRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEISQTGKQRHI 384 (1320)
T ss_pred ceeEEEEEEEeecccCCCCcceEEEEEEEEECCCchhccccCcccHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCCCcC
Confidence 99999999865432 3346789999999999999999999999999999999999999999999986 23799
Q ss_pred ccCCchhhHhhhhccCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHHhcCcccceeeccCCc
Q psy4062 304 PYRDSKLTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKIKAKVSRTFKSGA 365 (409)
Q Consensus 304 PyRdSkLT~LLk~sLgGn~~t~~I~~isP~~~~~~eTl~TL~fa~rak~Ik~~~~~n~~~~~ 365 (409)
||||||||+||||+|||||+|+||+||||...+++||++||+||+|||.|+|++++|....+
T Consensus 385 PYRDSKLTrLLQDSLGGNSKTvMIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvvNe~~~~ 446 (1320)
T PLN03188 385 PYRDSRLTFLLQESLGGNAKLAMVCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQD 446 (1320)
T ss_pred CCCcchHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHHHHHHHhhcCccceeccchhh
Confidence 99999999999999999999999999999999999999999999999999999999976443
No 10
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=6.9e-67 Score=518.90 Aligned_cols=263 Identities=38% Similarity=0.559 Sum_probs=234.0
Q ss_pred CCeEEEEEeCCCCChhhccCCceEEEEeCCcEEEeCCCCCCCcceeeccccchhhccccCCCceeEeeceEeCCCCCchh
Q psy4062 71 SHMKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKSKEMEFLFDRVYGPSESNQD 150 (409)
Q Consensus 71 ~~ikV~vRvRP~~~~E~~~~~~~~v~~~~~~~ii~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~asQ~e 150 (409)
.+|+|||||||+.+.|...+...++.+.+++++.+.++..... . ........|.||+||+++++|++
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~------------~-~~~~~~~~f~FD~vf~~~~~q~~ 67 (322)
T cd01367 1 MKITVAVRKRPLNDKELSKGETDVVSCESNPTVTVHEPKTKVD------------L-TKYIEKHTFRFDYVFDEAVTNEE 67 (322)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEECCCCEEEEecCccccc------------c-ccccCCceEecceEECCCCCHHH
Confidence 3799999999999999888888999998876666554332211 0 01123568999999999999999
Q ss_pred hhccchHHHHHHHhcCcceEEEeeccCCCCceeeecCCCCCCchhhhhhhhhhHHHhhhhc-------eeEEEEEeceee
Q psy4062 151 VYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGNENHKGIMYLTMGIRNRVSALTRQ-------MCTMRMYKTCLI 223 (409)
Q Consensus 151 Vf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G~~~~~GIi~~~~~~~~lf~~~~~~-------~s~~eiy~~~~~ 223 (409)
||+.+++|+|+++++|+|+||||||||||||||||+|+.+++||+|+++.+ +|+.+... .|++|||++.++
T Consensus 68 vf~~~~~plv~~~~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Glipr~~~~--lf~~~~~~~~~~~v~~S~~EIy~e~v~ 145 (322)
T cd01367 68 VYRSTVKPLIPHVFEGGVATCFAYGQTGSGKTYTMLGDENQEGLYALAARD--IFRLLAQPNDDLGVTVSFFEIYGGKLF 145 (322)
T ss_pred HHHHHHHHHHHHHhCCCceEEEeccCCCCCCceEecCcCCcCccHHHHHHH--HHHHHhccccccEEEEEEEeeecCchh
Confidence 999999999999999999999999999999999999999999999999999 99988763 399999998888
Q ss_pred Ee---------------------------------------------------ecCcccceeeEEEEEEeeccccceeEE
Q psy4062 224 LR---------------------------------------------------RKPSICEKMQLMVYVKMQDKATKQMKM 252 (409)
Q Consensus 224 ~~---------------------------------------------------~~~ssrsh~i~~i~v~~~~~~~~~~~~ 252 (409)
|+ +..++|+|++|++.+..... ....
T Consensus 146 DLL~~~~~l~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~---~~~~ 222 (322)
T cd01367 146 DLLNDRKRLSVLEDGKGNVQIVGLTEKPVTSVDELLELIESGNSLRTTGSTGANDQSSRSHAILQIILKNKKL---NKLL 222 (322)
T ss_pred hhccCccceeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHhcccccccCcCCCCcccceEEEEEEEEEecC---CeeE
Confidence 76 23489999999999998765 4568
Q ss_pred eEEEEeecCCcccccccC-CccchhhhhcccchhHHHHHHHHHHHhcCCCCcccCCchhhHhhhhccCCCccEEEEEEeC
Q psy4062 253 VKLSMIDLAGSERAAANS-SNQMRFKEGSNINKSLLALGNCINSLADGCRHVPYRDSKLTRILKDSLGGNCKTVMIANIA 331 (409)
Q Consensus 253 skL~~VDLAGSEr~~~~~-~~~~r~~E~~~IN~SL~aL~~vI~aL~~~~~~iPyRdSkLT~LLk~sLgGn~~t~~I~~is 331 (409)
++|+||||||||+..... ..+++++|+..||+||++|++||.+|++++.||||||||||+||+|+|||||+|+||+|||
T Consensus 223 s~l~~vDLAGsE~~~~~~~~~~~~~~e~~~IN~SL~~L~~vi~al~~~~~~iPyRdSkLT~lL~~~L~g~~~t~~I~~vs 302 (322)
T cd01367 223 GKLSFIDLAGSERGADTSEHDRQTRKEGAEINKSLLALKECIRALASNKAHVPFRGSKLTQVLRDSFIGNSKTVMIATIS 302 (322)
T ss_pred EEEEEeecCCccccccccccchhhHHhHhHHhHHHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhhCCCCeEEEEEEeC
Confidence 999999999999998765 5688999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHh
Q psy4062 332 PTALSYEDSYNTLKYATRAK 351 (409)
Q Consensus 332 P~~~~~~eTl~TL~fa~rak 351 (409)
|...+++||++||+||+|+|
T Consensus 303 p~~~~~~eTl~tL~fa~r~k 322 (322)
T cd01367 303 PSASSCEHTLNTLRYADRVK 322 (322)
T ss_pred CchhhHHHHHHHHHHHHhhC
Confidence 99999999999999999986
No 11
>KOG0240|consensus
Probab=100.00 E-value=4.1e-68 Score=536.29 Aligned_cols=275 Identities=35% Similarity=0.525 Sum_probs=246.9
Q ss_pred CCCCeEEEEEeCCCCChhhccCCceEEEEeC-CcEEEeCCCCCCCcceeeccccchhhccccCCCceeEeeceEeCCCCC
Q psy4062 69 EQSHMKVYIRVRPQSQKEEDGCHREIVKILN-RDTIIFDPKQDDSEFFFHGVKQSLRDINKKKSKEMEFLFDRVYGPSES 147 (409)
Q Consensus 69 ~~~~ikV~vRvRP~~~~E~~~~~~~~v~~~~-~~~ii~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~as 147 (409)
+..+|+|+||+||++..|...+...+....+ ..++.+... .+...|.||+||.|+++
T Consensus 5 ~~~~IkV~cR~rP~n~~E~~~~~~~i~~~~~~~~~v~~~~~----------------------~~~~~y~FDrVF~pnat 62 (607)
T KOG0240|consen 5 AECSIKVVCRFRPLNGLENNLGSKFIDCFENGENTVVLETT----------------------KETKTYVFDRVFSPNAT 62 (607)
T ss_pred CCCceEEEEEeecCCchhhhcCCcCccCCCCCcceEEEecc----------------------cccccceeeeecCCCcc
Confidence 3568999999999999998887777666665 334433221 12257999999999999
Q ss_pred chhhhccchHHHHHHHhcCcceEEEeeccCCCCceeeecCCCC---CCchhhhhhhhhhHHHhhhhce---------eEE
Q psy4062 148 NQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGNEN---HKGIMYLTMGIRNRVSALTRQM---------CTM 215 (409)
Q Consensus 148 Q~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G~~~---~~GIi~~~~~~~~lf~~~~~~~---------s~~ 215 (409)
|++||+.++.|+|++||.|||+||||||||||||||||.|... ..||+||++.+ +|..|.... ||+
T Consensus 63 Qe~Vy~~~a~~Iv~dVL~GYNGTvfaYGqT~sGKTytm~G~~~d~~~~GIipRi~~d--iF~~Iys~~~n~efhVkVsy~ 140 (607)
T KOG0240|consen 63 QEDVYEFAAKPIVDDVLLGYNGTVFAYGQTGSGKTYTMEGIGHDPEEMGIIPRILND--IFDHIYSMEENLEFHVKVSYF 140 (607)
T ss_pred HHHHHHHHHHHHHHHHhcccceeEEEecCCCCCcceeecccCCChhhcCcHHHHHHH--HHHHHhcCcccceEEEEEEee
Confidence 9999999999999999999999999999999999999999766 45999999999 999987644 899
Q ss_pred EEEeceeeEe----------------------------------------------------ecCcccceeeEEEEEEee
Q psy4062 216 RMYKTCLILR----------------------------------------------------RKPSICEKMQLMVYVKMQ 243 (409)
Q Consensus 216 eiy~~~~~~~----------------------------------------------------~~~ssrsh~i~~i~v~~~ 243 (409)
|||.+++.|+ +..+||||.||+|+|++.
T Consensus 141 EIYmEKi~DLL~~~k~nlsvheDK~~v~~vkG~t~~~v~s~d~v~~~i~~g~~nr~va~t~mn~~sSRSHsIF~i~VkQ~ 220 (607)
T KOG0240|consen 141 EIYMEKIRDLLDPEKTNLSVHEDKNRVPYVKGVTERFVSSPDEVLDVIDEGKSNRHVAVTNMNEHSSRSHSIFLIHVKQE 220 (607)
T ss_pred hhhhhHHHHHhCcccCCceeecccCCCceecCceeEEecCHHHHHHHHhcccccchhhhccccccccccceEEEEEEEec
Confidence 9997766554 345999999999999999
Q ss_pred ccccceeEEeEEEEeecCCcccccccCCccchhhhhcccchhHHHHHHHHHHHhcC-CCCcccCCchhhHhhhhccCCCc
Q psy4062 244 DKATKQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLADG-CRHVPYRDSKLTRILKDSLGGNC 322 (409)
Q Consensus 244 ~~~~~~~~~skL~~VDLAGSEr~~~~~~~~~r~~E~~~IN~SL~aL~~vI~aL~~~-~~~iPyRdSkLT~LLk~sLgGn~ 322 (409)
+......+.|+|.||||||||+++++++.|.-+.|+.+||+||.|||+||+||+++ ..|||||||||||+|+|+|||||
T Consensus 221 n~e~~~~~~gkLyLVDLaGSEkvsKtga~g~vleEaK~INkSLsaLgnvI~aLa~g~~shipYRDSKLTRILqdSLGGNs 300 (607)
T KOG0240|consen 221 NVEDKRKLSGKLYLVDLAGSEKVSKTGAEGAVLEEAKNINKSLSALGNVINALAEGPKSHIPYRDSKLTRILQDSLGGNS 300 (607)
T ss_pred cccchhhccccEEEEEcccccccCCCCccchhHHHHhhhhhhHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhCCCc
Confidence 99999999999999999999999999999999999999999999999999999999 69999999999999999999999
Q ss_pred cEEEEEEeCCCCCCHHHHHHHHHHHHHHhcCcccceeeccCCchh
Q psy4062 323 KTVMIANIAPTALSYEDSYNTLKYATRAKKIKAKVSRTFKSGAHF 367 (409)
Q Consensus 323 ~t~~I~~isP~~~~~~eTl~TL~fa~rak~Ik~~~~~n~~~~~~~ 367 (409)
+|.+|.|++|+..+-.||.+||+|++|||.|+|.+.+|..-....
T Consensus 301 RTtlIi~csPss~n~~ET~STl~fg~rak~ikN~v~~n~e~~~e~ 345 (607)
T KOG0240|consen 301 RTTLIICCSPSSLNEAETKSTLRFGNRAKTIKNTVWVNLELTAEE 345 (607)
T ss_pred ceEEEEecCCccccccccccchhhccccccccchhhhhhHhhHHH
Confidence 999999999999999999999999999999999999997666544
No 12
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=3.1e-66 Score=520.22 Aligned_cols=271 Identities=36% Similarity=0.607 Sum_probs=242.2
Q ss_pred CCeEEEEEeCCCCChhhccCCceEEEEeCC-cEEEeCCCCCCCcceeeccccchhhccccCCCceeEeeceEeCCCCCch
Q psy4062 71 SHMKVYIRVRPQSQKEEDGCHREIVKILNR-DTIIFDPKQDDSEFFFHGVKQSLRDINKKKSKEMEFLFDRVYGPSESNQ 149 (409)
Q Consensus 71 ~~ikV~vRvRP~~~~E~~~~~~~~v~~~~~-~~ii~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~asQ~ 149 (409)
.+|+|+||+||+...|...+...++.+.++ +.+.+.+.... ......|.||+||+++++|+
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~i~~~~~~~~i~~~~~~~~------------------~~~~~~f~Fd~vf~~~~~q~ 63 (352)
T cd01364 2 SNIQVVVRCRPRNSRERKEKSSVVVEVSGSSKEIIVSTGGAD------------------KQSTKTYTFDKVFGPEADQI 63 (352)
T ss_pred CCEEEEEEcCcCCccccccCCCeEEEEcCCCcEEEEcCCCcc------------------cccceeEeccccCCCCCCHH
Confidence 489999999999999988888888888875 56655543321 23456899999999999999
Q ss_pred hhhccchHHHHHHHhcCcceEEEeeccCCCCceeeecCCC-----------CCCchhhhhhhhhhHHHhhhhce------
Q psy4062 150 DVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGNE-----------NHKGIMYLTMGIRNRVSALTRQM------ 212 (409)
Q Consensus 150 eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G~~-----------~~~GIi~~~~~~~~lf~~~~~~~------ 212 (409)
+||+.++.|+|+++++|||+||||||||||||||||+|+. +++||+||++.+ +|+.+....
T Consensus 64 ~vy~~~~~plv~~~~~G~n~~i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~--Lf~~~~~~~~~~~v~ 141 (352)
T cd01364 64 EVYSQVVSPILDEVLMGYNCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQ--LFEKLESQNTEYSVK 141 (352)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEECCCCCCCCcEEecCCCcccccccccccccCCchHHHHHH--HHHHHHhccceeEEE
Confidence 9999999999999999999999999999999999999974 348999999999 998887532
Q ss_pred -eEEEEEeceeeEe---------------------------------------------------------ecCccccee
Q psy4062 213 -CTMRMYKTCLILR---------------------------------------------------------RKPSICEKM 234 (409)
Q Consensus 213 -s~~eiy~~~~~~~---------------------------------------------------------~~~ssrsh~ 234 (409)
|++|||++.++|+ +..++|+|+
T Consensus 142 ~S~~EIy~e~v~DLL~~~~~~~~~l~i~e~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~ 221 (352)
T cd01364 142 VSYLELYNEELFDLLSSESDLNKPLRIFDDTNNKGGVVIQGLEEITVNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHS 221 (352)
T ss_pred EEEEEeeCCeeeeCCCCccccCccceEEeccCcCCCEEeCCcEEEEeCCHHHHHHHHHHHhhhcccccCcCCCCCCCCce
Confidence 9999998887776 123789999
Q ss_pred eEEEEEEeeccc---cceeEEeEEEEeecCCcccccccCCccchhhhhcccchhHHHHHHHHHHHhcCCCCcccCCchhh
Q psy4062 235 QLMVYVKMQDKA---TKQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLADGCRHVPYRDSKLT 311 (409)
Q Consensus 235 i~~i~v~~~~~~---~~~~~~skL~~VDLAGSEr~~~~~~~~~r~~E~~~IN~SL~aL~~vI~aL~~~~~~iPyRdSkLT 311 (409)
+|++.+.+.... ......++|+||||||+|+..+.++.+.+++|+..||+||.+|++||++|+.++.|||||+||||
T Consensus 222 i~~i~i~~~~~~~~~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~iN~SL~~L~~vi~al~~~~~~vpyR~S~LT 301 (352)
T cd01364 222 IFSITIHIKETTISGEELVKIGKLNLVDLAGSENIGRSGAENKRAREAGNINQSLLTLGRVINALVEKSPHIPYRESKLT 301 (352)
T ss_pred EEEEEEEEeccCCCCCccEEEEEEEEEECCCccccccccCcchhhHHHhhhhHHHHHHHHHHHHHHcCCCCCCCcccHHH
Confidence 999999876543 34466899999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhccCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHHhcCcccceeec
Q psy4062 312 RILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKIKAKVSRTF 361 (409)
Q Consensus 312 ~LLk~sLgGn~~t~~I~~isP~~~~~~eTl~TL~fa~rak~Ik~~~~~n~ 361 (409)
+||+++|||||+|+||+||||...+++||++||+||++|++|+|+|.+|.
T Consensus 302 ~lL~~~Lgg~s~t~~I~~vsp~~~~~~eTl~TL~~a~~~~~i~n~P~~n~ 351 (352)
T cd01364 302 RLLQDSLGGRTKTSIIATISPASINLEETLSTLEYAHRAKNIKNKPEVNQ 351 (352)
T ss_pred HHHHHhcCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccCC
Confidence 99999999999999999999999999999999999999999999999886
No 13
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=1e-65 Score=512.74 Aligned_cols=264 Identities=38% Similarity=0.633 Sum_probs=235.0
Q ss_pred CCeEEEEEeCCCCChhhccCCceEEEEeCC-cEEEeCCCCCCCcceeeccccchhhccccCCCceeEeeceEeCCCCCch
Q psy4062 71 SHMKVYIRVRPQSQKEEDGCHREIVKILNR-DTIIFDPKQDDSEFFFHGVKQSLRDINKKKSKEMEFLFDRVYGPSESNQ 149 (409)
Q Consensus 71 ~~ikV~vRvRP~~~~E~~~~~~~~v~~~~~-~~ii~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~asQ~ 149 (409)
.+|+|+|||||+++.|...+...++.+.++ ..+.+..+... .....+.|.||+||+++++|+
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~-----------------~~~~~~~f~fd~vf~~~~~q~ 63 (333)
T cd01371 1 ENVKVVVRCRPLNKREKSEGAPEIVGVDENRGQVTVHNPKAD-----------------AKEPPKVFTFDAVYDPNSTQE 63 (333)
T ss_pred CCeEEEEEcCcCChhhhhcCCCeEEEEcCCCCEEEEeCCccc-----------------ccCCCceeeeccccCCCccHH
Confidence 379999999999999988888888888643 34444333221 123556899999999999999
Q ss_pred hhhccchHHHHHHHhcCcceEEEeeccCCCCceeeecCCCC---CCchhhhhhhhhhHHHhhhhce--------eEEEEE
Q psy4062 150 DVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGNEN---HKGIMYLTMGIRNRVSALTRQM--------CTMRMY 218 (409)
Q Consensus 150 eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G~~~---~~GIi~~~~~~~~lf~~~~~~~--------s~~eiy 218 (409)
+||+.++.|+|+++++|+|+||||||||||||||||+|++. ++||||+++.+ +|+.+.... |++|||
T Consensus 64 ~vy~~~~~plv~~~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~--Lf~~~~~~~~~~~~v~~S~~Eiy 141 (333)
T cd01371 64 DVYNETARPLVDSVLEGYNGTIFAYGQTGTGKTFTMEGVREPPELRGIIPNSFAH--IFGHIAKAENVQFLVRVSYLEIY 141 (333)
T ss_pred HHHHHHHHHHHHHHhCCCceeEEecCCCCCCCcEeecCCCCcccccchHHHHHHH--HHHHHhhccCccEEEEEEEEEee
Confidence 99999999999999999999999999999999999999887 89999999999 998876543 999999
Q ss_pred eceeeEe-----------------------------------------------------ecCcccceeeEEEEEEeecc
Q psy4062 219 KTCLILR-----------------------------------------------------RKPSICEKMQLMVYVKMQDK 245 (409)
Q Consensus 219 ~~~~~~~-----------------------------------------------------~~~ssrsh~i~~i~v~~~~~ 245 (409)
++.++|+ +..++|+|++|++++++.+.
T Consensus 142 ~e~v~DLL~~~~~~~l~i~~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~ 221 (333)
T cd01371 142 NEEVRDLLGKDQKKKLELKERPDRGVYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEK 221 (333)
T ss_pred CCeeeeCCCCCCCCceeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhhCccccccccCCCCCCcEEEEEEEEEEec
Confidence 9888876 23478999999999998765
Q ss_pred c---cceeEEeEEEEeecCCcccccccCCccchhhhhcccchhHHHHHHHHHHHhcCCC-CcccCCchhhHhhhhccCCC
Q psy4062 246 A---TKQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLADGCR-HVPYRDSKLTRILKDSLGGN 321 (409)
Q Consensus 246 ~---~~~~~~skL~~VDLAGSEr~~~~~~~~~r~~E~~~IN~SL~aL~~vI~aL~~~~~-~iPyRdSkLT~LLk~sLgGn 321 (409)
. ......|+|+|||||||||..+++..+.+++|+..||+||.+|++||.+|++++. |||||+||||+||+++||||
T Consensus 222 ~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~~~~~~E~~~iN~sL~~L~~vi~al~~~~~~~ipyR~SkLT~lL~~~l~g~ 301 (333)
T cd01371 222 GEDGENHIRVGKLNLVDLAGSERQSKTGATGDRLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGN 301 (333)
T ss_pred cCCCCCcEEEEEEEEEECCCCCcccccCCchhhhHhHhhhhhHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCC
Confidence 3 4567789999999999999999999999999999999999999999999999885 99999999999999999999
Q ss_pred ccEEEEEEeCCCCCCHHHHHHHHHHHHHHhcC
Q psy4062 322 CKTVMIANIAPTALSYEDSYNTLKYATRAKKI 353 (409)
Q Consensus 322 ~~t~~I~~isP~~~~~~eTl~TL~fa~rak~I 353 (409)
|+|+||+||+|...+++||++||+||+|||+|
T Consensus 302 s~t~~I~~vsP~~~~~~eTl~TL~fa~r~r~I 333 (333)
T cd01371 302 SKTVMCANIGPADYNYDETLSTLRYANRAKNI 333 (333)
T ss_pred ceEEEEEEeCCccccHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999987
No 14
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=9.3e-66 Score=511.51 Aligned_cols=259 Identities=37% Similarity=0.576 Sum_probs=239.4
Q ss_pred CCeEEEEEeCCCCChhhccCCceEEEEeCCcEEEeCCCCCCCcceeeccccchhhccccCCCceeEeeceEeCCCCCchh
Q psy4062 71 SHMKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKSKEMEFLFDRVYGPSESNQD 150 (409)
Q Consensus 71 ~~ikV~vRvRP~~~~E~~~~~~~~v~~~~~~~ii~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~asQ~e 150 (409)
.+|+|+|||||+++.|...+...++.+.+++++.+..+. ..+.|.||+||+++++|++
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~v~~~~~~----------------------~~~~f~FD~vf~~~~~q~~ 59 (325)
T cd01369 2 CNIKVVCRFRPLNEKEELRGSKSIVKFPGEDTVSIAGSD----------------------DGKTFSFDRVFPPNTTQED 59 (325)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEEcCCCEEEecCCC----------------------CceEEEcCeEECCCCCHHH
Confidence 479999999999999988888999999988887776432 2347999999999999999
Q ss_pred hhccchHHHHHHHhcCcceEEEeeccCCCCceeeecCCCC---CCchhhhhhhhhhHHHhhhhc---------eeEEEEE
Q psy4062 151 VYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGNEN---HKGIMYLTMGIRNRVSALTRQ---------MCTMRMY 218 (409)
Q Consensus 151 Vf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G~~~---~~GIi~~~~~~~~lf~~~~~~---------~s~~eiy 218 (409)
||+.+++|+|+++++|+|+||||||||||||||||+|++. ++||+|+++.+ +|+.+... .|++|||
T Consensus 60 vy~~~~~~~v~~~~~G~n~~i~ayG~tgSGKT~Tm~G~~~~~~~~Giipr~~~~--Lf~~~~~~~~~~~~~v~~S~~EIy 137 (325)
T cd01369 60 VYNFVAKPIVDDVLNGYNGTIFAYGQTGSGKTYTMEGPPGDPELKGIIPRIVHD--IFEHISSMDENLEFHVKVSYLEIY 137 (325)
T ss_pred HHHHHHHHHHHHHHcCccceEEEeCCCCCCceEEecCCCCccccCChHHHHHHH--HHHHHhhccCCceEEEEEEEEEEE
Confidence 9999999999999999999999999999999999999988 89999999999 99987653 2899999
Q ss_pred eceeeEe----------------------------------------------------ecCcccceeeEEEEEEeeccc
Q psy4062 219 KTCLILR----------------------------------------------------RKPSICEKMQLMVYVKMQDKA 246 (409)
Q Consensus 219 ~~~~~~~----------------------------------------------------~~~ssrsh~i~~i~v~~~~~~ 246 (409)
++.++|+ +..++|+|++|++.+.+.+..
T Consensus 138 ~e~v~DLL~~~~~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~i~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~ 217 (325)
T cd01369 138 MEKIRDLLDVSKDNLQVHEDKNRGVYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEESSRSHSIFLITLKQENVE 217 (325)
T ss_pred CCChhhcccCccCCceEEEcCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccCcCCCccccccEEEEEEEEEEecC
Confidence 8888776 234789999999999998877
Q ss_pred cceeEEeEEEEeecCCcccccccCCccchhhhhcccchhHHHHHHHHHHHhcCC-CCcccCCchhhHhhhhccCCCccEE
Q psy4062 247 TKQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLADGC-RHVPYRDSKLTRILKDSLGGNCKTV 325 (409)
Q Consensus 247 ~~~~~~skL~~VDLAGSEr~~~~~~~~~r~~E~~~IN~SL~aL~~vI~aL~~~~-~~iPyRdSkLT~LLk~sLgGn~~t~ 325 (409)
......++|+||||||+|+..+.+..+.+++|+..||+||++|++||.+|++++ .||||||||||+||+++|||||+|+
T Consensus 218 ~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~~~~vpyR~S~LT~lL~~~L~g~s~t~ 297 (325)
T cd01369 218 TGSKKRGKLFLVDLAGSEKVSKTGAEGQTLEEAKKINKSLSALGNVINALTDGKSTHIPYRDSKLTRILQDSLGGNSRTT 297 (325)
T ss_pred CCCEEEEEEEEEECCCCCcccccCCcchhHHHHHHHhHHHHHHHHHHHHHHcCCCCcCCCccCHHHHHHHHhcCCCCeEE
Confidence 777889999999999999999999999999999999999999999999999988 9999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHhcC
Q psy4062 326 MIANIAPTALSYEDSYNTLKYATRAKKI 353 (409)
Q Consensus 326 ~I~~isP~~~~~~eTl~TL~fa~rak~I 353 (409)
||+||||...+++||++||+||+|||+|
T Consensus 298 ~I~~vsp~~~~~~eTl~TL~~a~r~~~i 325 (325)
T cd01369 298 LIICCSPSSYNESETLSTLRFGARAKTI 325 (325)
T ss_pred EEEEeCCccccHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999987
No 15
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=1.4e-65 Score=508.94 Aligned_cols=255 Identities=35% Similarity=0.575 Sum_probs=225.9
Q ss_pred CeEEEEEeCCCCChhhccCCceEEEEeCC-----cEEEeCCCCCCCcceeeccccchhhccccCCCceeEeeceEeCCCC
Q psy4062 72 HMKVYIRVRPQSQKEEDGCHREIVKILNR-----DTIIFDPKQDDSEFFFHGVKQSLRDINKKKSKEMEFLFDRVYGPSE 146 (409)
Q Consensus 72 ~ikV~vRvRP~~~~E~~~~~~~~v~~~~~-----~~ii~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~a 146 (409)
+|+|+|||||+.+.|. +...++.+.+. ..+.+..+.. ....+.|.||+||++++
T Consensus 1 ~i~V~vRvRP~~~~e~--~~~~~v~~~~~~~~~~~~v~~~~~~~-------------------~~~~~~f~FD~vf~~~~ 59 (319)
T cd01376 1 NVRVVVRVRPFLDCEE--DSSSCVRGIDSDQGQAKSVEIENPRN-------------------RGETKKYQFDAFYGTEC 59 (319)
T ss_pred CcEEEEEeCcCCcccc--CCCceEEEeCCCCCcceEEEEeCCCC-------------------CCCccEEecCeEECCCC
Confidence 5899999999998883 34566666544 2333332221 12345799999999999
Q ss_pred CchhhhccchHHHHHHHhcCcceEEEeeccCCCCceeeecCCCCCCchhhhhhhhhhHHHhhhhc-------eeEEEEEe
Q psy4062 147 SNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGNENHKGIMYLTMGIRNRVSALTRQ-------MCTMRMYK 219 (409)
Q Consensus 147 sQ~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G~~~~~GIi~~~~~~~~lf~~~~~~-------~s~~eiy~ 219 (409)
+|++||+.++.|+|+++++|+|+||||||||||||||||+|++.++||+|+++.+ +|+.+... .|++|||+
T Consensus 60 ~q~~vy~~~~~plv~~~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~Glipr~~~~--Lf~~~~~~~~~~~v~~S~~EIy~ 137 (319)
T cd01376 60 TQEDIFSREVKPIVPHLLSGQNATVFAYGSTGAGKTHTMLGDPNEPGLIPRTLSD--LLRMGRKQAWTGAFSMSYYEIYN 137 (319)
T ss_pred CHHHHHHHHHHHHHHHHhCCCceEEEEECCCCCCCcEEEeCCcCccchHHHHHHH--HHHHHhhccccceEEEEEEEEEC
Confidence 9999999999999999999999999999999999999999999999999999999 99887654 29999999
Q ss_pred ceeeEe----------------------------------------------------ecCcccceeeEEEEEEeecccc
Q psy4062 220 TCLILR----------------------------------------------------RKPSICEKMQLMVYVKMQDKAT 247 (409)
Q Consensus 220 ~~~~~~----------------------------------------------------~~~ssrsh~i~~i~v~~~~~~~ 247 (409)
+.++|+ +..++|+|++|++.+.+.+.
T Consensus 138 e~v~DLL~~~~~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~-- 215 (319)
T cd01376 138 EKVYDLLEPAKKELPIREDKDGNILIVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQPAS-- 215 (319)
T ss_pred CEeeEccCCCCCCceEEEcCCCCEEeeCCEEEEeCCHHHHHHHHHHHHhhhccccCcCCCccCCCeEEEEEEEEEECC--
Confidence 998887 23479999999999987754
Q ss_pred ceeEEeEEEEeecCCcccccccCCccchhhhhcccchhHHHHHHHHHHHhcCCCCcccCCchhhHhhhhccCCCccEEEE
Q psy4062 248 KQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLADGCRHVPYRDSKLTRILKDSLGGNCKTVMI 327 (409)
Q Consensus 248 ~~~~~skL~~VDLAGSEr~~~~~~~~~r~~E~~~IN~SL~aL~~vI~aL~~~~~~iPyRdSkLT~LLk~sLgGn~~t~~I 327 (409)
.....++|+||||||||+..+++..|.+++|+..||+||++|++||.+|+.+..|||||+||||+||+|+|||||+|+||
T Consensus 216 ~~~~~s~l~~VDLAGsE~~~~~~~~g~~~~e~~~iN~Sl~~L~~vi~aL~~~~~~ipyr~S~LT~lL~~~L~g~s~t~~i 295 (319)
T cd01376 216 NIQLEGKLNLIDLAGSEDNRRTGNEGIRLKESAAINSSLFVLSKVVDALNKGLPRIPYRESKLTRLLQDSLGGGSRCIMV 295 (319)
T ss_pred CceEEEEEEEEECCCCCcccccCCccchhhhhhhhhhhHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhcCCCccEEEE
Confidence 33678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHHh
Q psy4062 328 ANIAPTALSYEDSYNTLKYATRAK 351 (409)
Q Consensus 328 ~~isP~~~~~~eTl~TL~fa~rak 351 (409)
+||||...+++||++||+||+|||
T Consensus 296 ~~vsp~~~~~~eTl~TL~fa~r~~ 319 (319)
T cd01376 296 ANIAPERSFYQDTLSTLNFASRSK 319 (319)
T ss_pred EEeCCchhhHHHHHHHHHHHHhhC
Confidence 999999999999999999999986
No 16
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=5.2e-65 Score=505.37 Aligned_cols=256 Identities=39% Similarity=0.618 Sum_probs=233.7
Q ss_pred CeEEEEEeCCCCChhhccCCceEEEEeCCcEEEeCCCCCCCcceeeccccchhhccccCCCceeEeeceEeCCCCCchhh
Q psy4062 72 HMKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKSKEMEFLFDRVYGPSESNQDV 151 (409)
Q Consensus 72 ~ikV~vRvRP~~~~E~~~~~~~~v~~~~~~~ii~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~asQ~eV 151 (409)
+|+|+||+||+...|. .+...++.+.++.+++++++. ....|.||+||+++++|++|
T Consensus 1 ~V~V~vRvRP~~~~e~-~~~~~~~~~~~~~~v~~~~~~----------------------~~~~f~fd~vf~~~~~q~~v 57 (321)
T cd01374 1 KIKVSVRVRPLNPRES-DNEQVAWSIDNDNTISLEEST----------------------PGQSFTFDRVFGGESTNREV 57 (321)
T ss_pred CeEEEEEcCcCCcccc-cCCcceEEECCCCEEEEcCCC----------------------CCeEEecCeEECCCCCHHHH
Confidence 5899999999999887 356778888888677765431 23579999999999999999
Q ss_pred hccchHHHHHHHhcCcceEEEeeccCCCCceeeecCCCCCCchhhhhhhhhhHHHhhhhc--------eeEEEEEeceee
Q psy4062 152 YDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGNENHKGIMYLTMGIRNRVSALTRQ--------MCTMRMYKTCLI 223 (409)
Q Consensus 152 f~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G~~~~~GIi~~~~~~~~lf~~~~~~--------~s~~eiy~~~~~ 223 (409)
|+.++.|+|+++++|+|+||||||||||||||||+|++.++||+|+++.+ +|..+... .|++|||++.++
T Consensus 58 y~~~~~p~v~~~l~G~n~~i~ayG~tgSGKT~T~~G~~~~~Gli~r~~~~--lf~~~~~~~~~~~~v~~S~~Eiy~e~v~ 135 (321)
T cd01374 58 YERIAKPVVRSALEGYNGTIFAYGQTSSGKTFTMSGDEQEPGIIPLAVRD--IFQRIQDTPDREFLLRVSYLEIYNEKIK 135 (321)
T ss_pred HHHHHHHHHHHHHCCCceeEEeecCCCCCCceeccCCCCCCchHHHHHHH--HHHHHhcccCceEEEEEEEEEEEcCEeE
Confidence 99999999999999999999999999999999999999999999999999 99988553 399999999888
Q ss_pred Ee----------------------------------------------------ecCcccceeeEEEEEEeecccc---c
Q psy4062 224 LR----------------------------------------------------RKPSICEKMQLMVYVKMQDKAT---K 248 (409)
Q Consensus 224 ~~----------------------------------------------------~~~ssrsh~i~~i~v~~~~~~~---~ 248 (409)
|+ +..++|+|++|++++.+..... .
T Consensus 136 DLL~~~~~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~ 215 (321)
T cd01374 136 DLLSPSPQELRIREDPNKGVVVAGLTEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGDSESG 215 (321)
T ss_pred EccCCCCCCceEEECCCCCEEeCCceEEEeCCHHHHHHHHHHHHhccccccCcCCCccccccEEEEEEEEEEecCCCCCC
Confidence 87 2247899999999999887654 6
Q ss_pred eeEEeEEEEeecCCcccccccCCccchhhhhcccchhHHHHHHHHHHHhcCC--CCcccCCchhhHhhhhccCCCccEEE
Q psy4062 249 QMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLADGC--RHVPYRDSKLTRILKDSLGGNCKTVM 326 (409)
Q Consensus 249 ~~~~skL~~VDLAGSEr~~~~~~~~~r~~E~~~IN~SL~aL~~vI~aL~~~~--~~iPyRdSkLT~LLk~sLgGn~~t~~ 326 (409)
....++|+||||||+|+..+.+ .+.+++|+..||+||.+|++||.+|++++ .|||||+||||+||+++|||||+|+|
T Consensus 216 ~~~~s~l~~vDLAGsE~~~~~~-~~~~~~e~~~iN~Sl~~L~~vi~al~~~~~~~~vpyR~SkLT~lL~~~L~g~s~t~~ 294 (321)
T cd01374 216 TVRVSTLNLIDLAGSERASQTG-AGERRKEGSFINKSLLTLGTVISKLSEGKNSGHIPYRDSKLTRILQPSLSGNARTAI 294 (321)
T ss_pred cEEEEEEEEEECCCCCccccCC-CCccccccchhhhHHHHHHHHHHHHHhcCCCCcCCCcCCHHHHHHHHhcCCCceEEE
Confidence 7788999999999999999888 89999999999999999999999999986 99999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHHHhcC
Q psy4062 327 IANIAPTALSYEDSYNTLKYATRAKKI 353 (409)
Q Consensus 327 I~~isP~~~~~~eTl~TL~fa~rak~I 353 (409)
|+||||...+++||++||+||+||++|
T Consensus 295 i~~vsp~~~~~~eTl~TL~~a~r~~~i 321 (321)
T cd01374 295 ICTISPASSHVEETLNTLKFASRAKKV 321 (321)
T ss_pred EEEeCCccccHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999986
No 17
>KOG0241|consensus
Probab=100.00 E-value=7.3e-66 Score=535.91 Aligned_cols=282 Identities=34% Similarity=0.521 Sum_probs=250.9
Q ss_pred CCCeEEEEEeCCCCChhhccCCceEEEEeCCcEEEeCCCCCCCcceeeccccchhhccccCCCceeEeeceEeCC-----
Q psy4062 70 QSHMKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKSKEMEFLFDRVYGP----- 144 (409)
Q Consensus 70 ~~~ikV~vRvRP~~~~E~~~~~~~~v~~~~~~~ii~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~----- 144 (409)
..+|||+|||||++.+|.+....+++.++.+++++..|+..... +.....+.|.||++|++
T Consensus 3 ~~kVkVaVRVRP~nrREl~l~tk~vv~vd~~q~vl~~~pp~~~~--------------~~~k~pktFAFDhcF~s~dpes 68 (1714)
T KOG0241|consen 3 DAKVKVAVRVRPMNRRELELSTKCVVEVDKNQTVLHPPPPNHKI--------------GESKGPKTFAFDHCFWSMDPES 68 (1714)
T ss_pred CcceEEEEEecccchhhhcccccceEEeccCceeecCCCccccc--------------cccCCCceeecccccccCCccc
Confidence 46899999999999999999889999999988887666543321 11245678999999986
Q ss_pred --CCCchhhhccchHHHHHHHhcCcceEEEeeccCCCCceeeecCCCCCCchhhhhhhhhhHHHhhhhce----------
Q psy4062 145 --SESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGNENHKGIMYLTMGIRNRVSALTRQM---------- 212 (409)
Q Consensus 145 --~asQ~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G~~~~~GIi~~~~~~~~lf~~~~~~~---------- 212 (409)
.+.|++||+.++.-+|+++|+|||+||||||||||||||||+|..+++|||||.+.. +|..|....
T Consensus 69 ~n~agQE~Vf~~lG~~il~naf~GyNaCifaYGQtGsGKsYsmmGt~~QpGiIPrlc~~--lFe~I~k~~n~~~tfkVeV 146 (1714)
T KOG0241|consen 69 KNYAGQETVFKCLGEGILENAFQGYNACIFAYGQTGSGKSYSMMGTAEQPGIIPRLCES--LFERIDKESNPSQTFKVEV 146 (1714)
T ss_pred cccccchhHHHhcchHHHHHHhhccceeeEEecccCCCceeEeeccCCCCCchhHHHHH--HHHHHHhccCCCceEEEEE
Confidence 368999999999999999999999999999999999999999999999999999999 999998765
Q ss_pred eEEEEEeceeeEe------------------------------------------------------ecCcccceeeEEE
Q psy4062 213 CTMRMYKTCLILR------------------------------------------------------RKPSICEKMQLMV 238 (409)
Q Consensus 213 s~~eiy~~~~~~~------------------------------------------------------~~~ssrsh~i~~i 238 (409)
||+|||+++..|+ +..++|+|++|.+
T Consensus 147 SymEIynEkv~DLLdPk~ssqtlkVrehsvlGp~vdGLS~laV~S~qdId~lm~egnKsrtvaatnmn~EssrsHaVFsl 226 (1714)
T KOG0241|consen 147 SYMEIYNEKVRDLLDPKGSSQTLKVREHSVLGPYVDGLSQLAVTSFQDIDSLMSEGNKSRTVAATNMNEESSRSHAVFSL 226 (1714)
T ss_pred EHHHHhhcchhhhhCCCCCcceeEEeecccccccccchhhhhcccHHHHHHHHHhccccceeeeecccccccccceeEEE
Confidence 8999998887776 2238899999999
Q ss_pred EEEeeccc----cceeEEeEEEEeecCCcccccccCCccchhhhhcccchhHHHHHHHHHHHhcCC------CCcccCCc
Q psy4062 239 YVKMQDKA----TKQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLADGC------RHVPYRDS 308 (409)
Q Consensus 239 ~v~~~~~~----~~~~~~skL~~VDLAGSEr~~~~~~~~~r~~E~~~IN~SL~aL~~vI~aL~~~~------~~iPyRdS 308 (409)
.+.+.--+ ..-.+.++|.+||||||||+.++++.|.|++|+.+||+||.+||.||.||++.. ++||||||
T Consensus 227 vvtQ~l~D~ktg~SgeKvsklslVDLAgserasktga~g~rlkegsNinkSLttLglVIsaLadq~n~kgkdKfvPYrDS 306 (1714)
T KOG0241|consen 227 VVTQTLYDLKTGHSGEKVSKLSLVDLAGSERASKTGAAGSRLKEGSNINKSLTTLGLVISALADQKNGKGKDKFVPYRDS 306 (1714)
T ss_pred EEeeEEeccccCcchhheeeeeEEEeccccccccccchhhhhhhcCCcchhhHHHHHHHHHHHHhhcCCCccccccchhH
Confidence 98875433 233568899999999999999999999999999999999999999999998753 69999999
Q ss_pred hhhHhhhhccCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHHhcCcccceeeccCCchh
Q psy4062 309 KLTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKIKAKVSRTFKSGAHF 367 (409)
Q Consensus 309 kLT~LLk~sLgGn~~t~~I~~isP~~~~~~eTl~TL~fa~rak~Ik~~~~~n~~~~~~~ 367 (409)
.||+||||+|||||+|+||+||||++++|+|||+|||||.|||+|+|...+|.......
T Consensus 307 VLTwLLkD~LGGNsrTvMiatvSPaAdnyeeTlStLRYadrAkrIvN~avvNedpnarv 365 (1714)
T KOG0241|consen 307 VLTWLLKDNLGGNSRTVMIATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNARV 365 (1714)
T ss_pred HHHHHHHhhcCCCceeEEEEEecccccchHHHHHHHHHHHHHHHhhccccccCCchHHH
Confidence 99999999999999999999999999999999999999999999999999998776653
No 18
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=2e-64 Score=504.94 Aligned_cols=256 Identities=37% Similarity=0.570 Sum_probs=230.1
Q ss_pred CeEEEEEeCCCCChhhccCCceEEEEeCCc-EEEeCCCCCCCcceeeccccchhhccccCCCceeEeeceEeCCCCCchh
Q psy4062 72 HMKVYIRVRPQSQKEEDGCHREIVKILNRD-TIIFDPKQDDSEFFFHGVKQSLRDINKKKSKEMEFLFDRVYGPSESNQD 150 (409)
Q Consensus 72 ~ikV~vRvRP~~~~E~~~~~~~~v~~~~~~-~ii~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~asQ~e 150 (409)
+|+|+||+||+.+.|...+...++.+...+ .+++. .++.|.||+||+++++|++
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~-------------------------~~~~f~FD~vf~~~~~q~~ 56 (341)
T cd01372 2 SVRVAVRVRPLLPKELLEGCQVCVSVVPGEPQVTVG-------------------------TDKSFTFDYVFDPSTSQEE 56 (341)
T ss_pred CeEEEEECCCCCchhcccCCCeEEEEeCCCCEEEec-------------------------CCcEEeccccCCCCCCHHH
Confidence 699999999999999888777777775543 22221 1347999999999999999
Q ss_pred hhccchHHHHHHHhcCcceEEEeeccCCCCceeeecCCC------CCCchhhhhhhhhhHHHhhhhce---------eEE
Q psy4062 151 VYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGNE------NHKGIMYLTMGIRNRVSALTRQM---------CTM 215 (409)
Q Consensus 151 Vf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G~~------~~~GIi~~~~~~~~lf~~~~~~~---------s~~ 215 (409)
||+.+++|+|+++++|+|+||||||||||||||||+|+. +++|||||++.+ +|+.+.... |++
T Consensus 57 vy~~~~~plv~~~~~G~n~~i~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~--LF~~~~~~~~~~~~~v~vS~~ 134 (341)
T cd01372 57 VYNTCVAPLVDGLFEGYNATVLAYGQTGSGKTYTMGTAFTASEDEEEVGIIPRAIQH--IFKKIDEKKDEPDFQLKVSFL 134 (341)
T ss_pred HHHHHHHHHHHHHhCCCccceeeecCCCCCCcEEecCCCccccccccCChHHHHHHH--HHHHHHhccccceEEEEEEEE
Confidence 999999999999999999999999999999999999974 578999999999 999887432 899
Q ss_pred EEEeceeeEe-------------------------------------------------------ecCcccceeeEEEEE
Q psy4062 216 RMYKTCLILR-------------------------------------------------------RKPSICEKMQLMVYV 240 (409)
Q Consensus 216 eiy~~~~~~~-------------------------------------------------------~~~ssrsh~i~~i~v 240 (409)
|||++.++|+ +..++|+|++|++.+
T Consensus 135 EIy~e~v~DLL~~~~~~~~~l~i~e~~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRsH~i~~i~v 214 (341)
T cd01372 135 ELYNEEVRDLLSPSTSEKSPIQIREDSKGNIIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITL 214 (341)
T ss_pred EeECCeeecCCCCcccCCCCceEEECCCCCEecCCCEEEEECCHHHHHHHHHHHHHhcccccccCCCccCcCcEEEEEEE
Confidence 9999888876 234789999999999
Q ss_pred Eeeccc----------cceeEEeEEEEeecCCcccccccCCccchhhhhcccchhHHHHHHHHHHHhcCC---CCcccCC
Q psy4062 241 KMQDKA----------TKQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLADGC---RHVPYRD 307 (409)
Q Consensus 241 ~~~~~~----------~~~~~~skL~~VDLAGSEr~~~~~~~~~r~~E~~~IN~SL~aL~~vI~aL~~~~---~~iPyRd 307 (409)
.+.... ......++|+||||||+|+..++++.+++++|+..||+||.+|++||.+|+.++ .|||||+
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~aL~~vi~al~~~~~~~~~ipyR~ 294 (341)
T cd01372 215 EQTRKNGPIAPMSGDDKNSTLTSKFHFVDLAGSERLKKTGATGDRLKEGISINSGLLALGNVISALGDESKKGSHVPYRD 294 (341)
T ss_pred EEEecCCccccccccCCCceeeEEEEEEECCCCcccccccCchhHhHHHHHHhHHHHHHHHHHHHHHhcCCCCCCCCCcc
Confidence 988763 456778999999999999999999999999999999999999999999999887 7999999
Q ss_pred chhhHhhhhccCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHHhcCc
Q psy4062 308 SKLTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKIK 354 (409)
Q Consensus 308 SkLT~LLk~sLgGn~~t~~I~~isP~~~~~~eTl~TL~fa~rak~Ik 354 (409)
||||+||+++||||++|+||+||||...+++||++||+||+|||+||
T Consensus 295 S~LT~lL~~~Lgg~s~t~~I~~vsp~~~~~~eTl~tL~~a~~~~~ik 341 (341)
T cd01372 295 SKLTRLLQDSLGGNSHTLMIACVSPADSNFEETLNTLKYANRARNIK 341 (341)
T ss_pred cHHHHHHHHhcCCCceEEEEEEeCCChhhHHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999999999999999999999997
No 19
>KOG0239|consensus
Probab=100.00 E-value=2.2e-65 Score=543.65 Aligned_cols=281 Identities=32% Similarity=0.542 Sum_probs=245.2
Q ss_pred ccccccccccccccccCCCCCCCeEEEEEeCCCCChhhccCCceEEEEeCCcEEEeCCCCCCCcceeeccccchhhcccc
Q psy4062 50 EDGCHSVMTTLELGIIHTGEQSHMKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKK 129 (409)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~ikV~vRvRP~~~~E~~~~~~~~v~~~~~~~ii~dp~~~~~~~~~~~~~~~~~~~~~~ 129 (409)
+-.+|+.++.+ +|+|+|||||||+.+.|.......++...+...++.+.+....
T Consensus 302 r~kL~N~i~eL---------kGnIRV~CRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 355 (670)
T KOG0239|consen 302 RRKLHNEILEL---------KGNIRVFCRVRPLLPSEKQRLQSKVIDTEEQGEVQVDSPDKGD----------------- 355 (670)
T ss_pred HHHHHHHHHHh---------hcCceEEEEecCCCccccccccccccccCCcceeEeecCCCCC-----------------
Confidence 33688888877 7999999999999998876544455554443223322222110
Q ss_pred CCCceeEeeceEeCCCCCchhhhccchHHHHHHHhcCcceEEEeeccCCCCceeeecC-CCCCCchhhhhhhhhhHHHhh
Q psy4062 130 KSKEMEFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLG-NENHKGIMYLTMGIRNRVSAL 208 (409)
Q Consensus 130 ~~~~~~F~FD~VF~~~asQ~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G-~~~~~GIi~~~~~~~~lf~~~ 208 (409)
......|.||+||+|.++|++||+++ .|+|+++|+|||+||||||||||||||||.| +++++|||||++.. +|..+
T Consensus 356 ~~~~~~f~fdkVf~p~~sQ~~VF~e~-~~lv~S~lDGYnVCIFAYGQTGSGKTyTM~G~~~~~~Giipral~~--lF~~~ 432 (670)
T KOG0239|consen 356 KLEPQSFKFDKVFGPLASQDDVFEEV-SPLVQSALDGYNVCIFAYGQTGSGKTYTMSGPTPEDPGIIPRALEK--LFRTI 432 (670)
T ss_pred CCccccceeeeecCCcccHHHHHHHH-HHHHHHHhcCcceeEEEecccCCCccccccCCCcccCCccHHHHHH--HHHHH
Confidence 11223699999999999999999976 9999999999999999999999999999999 79999999999999 99888
Q ss_pred hhce---------eEEEEEeceeeEe------------------------------------------------------
Q psy4062 209 TRQM---------CTMRMYKTCLILR------------------------------------------------------ 225 (409)
Q Consensus 209 ~~~~---------s~~eiy~~~~~~~------------------------------------------------------ 225 (409)
.... +++|||++.++|+
T Consensus 433 ~~~~~g~~y~~~~s~~EIYNe~i~DlL~~~~~~~k~~I~~~~~~~~~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~ 512 (670)
T KOG0239|consen 433 TSLKSGWKYDKTVSMLEIYNEAIRDLLSDESYVGKLEIVDDAEGNLMVPLLTVIKVGSSEEVDILLEIGLSNRSVASTAS 512 (670)
T ss_pred HhhccCceEEeeeehhHHHHHHHHHhccccccccceeEEEcCCCceecccceEEecCCHHHHHHHHHHhhcccccccccc
Confidence 7665 6899998766653
Q ss_pred ecCcccceeeEEEEEEeeccccceeEEeEEEEeecCCcccccccCCccchhhhhcccchhHHHHHHHHHHHhcCCCCccc
Q psy4062 226 RKPSICEKMQLMVYVKMQDKATKQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLADGCRHVPY 305 (409)
Q Consensus 226 ~~~ssrsh~i~~i~v~~~~~~~~~~~~skL~~VDLAGSEr~~~~~~~~~r~~E~~~IN~SL~aL~~vI~aL~~~~~~iPy 305 (409)
+..|+|||++|+++|...+..++....+.|+|||||||||+++++..|+|++|+.+||+||++||+||.||+....||||
T Consensus 513 Ne~SSRSH~v~~v~v~g~~~~t~~~~~g~l~LVDLAGSER~~~s~~tG~RlkE~Q~INkSLS~LgdVi~AL~~k~~HiPy 592 (670)
T KOG0239|consen 513 NERSSRSHLVFRVRIRGINELTGIRVTGVLNLVDLAGSERVSKSGVTGERLKEAQNINKSLSALGDVISALASKRSHIPY 592 (670)
T ss_pred chhhhccceEEEEEEeccccCcccccccceeEeecccCcccCcCCCchhhhHHHHHhchhhhhhHHHHHHHhhcCCCCcc
Confidence 23489999999999999988899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhHhhhhccCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHHhcCccccee
Q psy4062 306 RDSKLTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKIKAKVSR 359 (409)
Q Consensus 306 RdSkLT~LLk~sLgGn~~t~~I~~isP~~~~~~eTl~TL~fa~rak~Ik~~~~~ 359 (409)
||||||+||+++|||++||+|+++|||...++.||+++|+||.|++.+...+..
T Consensus 593 RNSKLT~lLq~sLGG~sKTLmfv~isP~~~~~~Etl~sL~FA~rv~~~~lG~a~ 646 (670)
T KOG0239|consen 593 RNSKLTQLLQDSLGGDSKTLMFVNISPAAAALFETLCSLRFATRVRSVELGSAR 646 (670)
T ss_pred cccchHHHhHhhhCCccceeeEEEeCccHHHHhhhhhccchHHHhhceeccccc
Confidence 999999999999999999999999999999999999999999999999877544
No 20
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=2.4e-63 Score=495.81 Aligned_cols=262 Identities=32% Similarity=0.552 Sum_probs=223.6
Q ss_pred CeEEEEEeCCCCChhhccCCceEEEEeCCcEEEeCCCCCCCcceeeccccchhhccccCCCceeEeeceEeCCCCCchhh
Q psy4062 72 HMKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKSKEMEFLFDRVYGPSESNQDV 151 (409)
Q Consensus 72 ~ikV~vRvRP~~~~E~~~~~~~~v~~~~~~~ii~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~asQ~eV 151 (409)
+|||+||+||+...+.. .+.-..+++.+.+..+..... .........+.|.||+||++ ++|++|
T Consensus 1 ~i~V~vRvRP~~~~~~~----~~~~~~~~~~~~~~~p~~~~~-----------~~~~~~~~~~~f~FD~vf~~-~~q~~v 64 (334)
T cd01375 1 TIQVFVRVRPTPTKQGS----SIKLGPDGKSVSSNLPKDLVR-----------GVVNNQQEDFSFKFDGVFHN-ASQEEV 64 (334)
T ss_pred CeEEEEECCCCCCCCCc----cEEEcCCCCEEEEeccccccc-----------ccccCCcCceEEEcCcccCC-CCHHHH
Confidence 48999999999884422 233333344443333332211 11112345678999999999 999999
Q ss_pred hccchHHHHHHHhcCcceEEEeeccCCCCceeeecCCC---CCCchhhhhhhhhhHHHhhhhce--------eEEEEEec
Q psy4062 152 YDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGNE---NHKGIMYLTMGIRNRVSALTRQM--------CTMRMYKT 220 (409)
Q Consensus 152 f~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G~~---~~~GIi~~~~~~~~lf~~~~~~~--------s~~eiy~~ 220 (409)
|+.++.|+|+++++|+|+||||||||||||||||+|+. .++||+|+++.+ +|..+.... |++|||++
T Consensus 65 y~~~~~p~v~~~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~--lf~~~~~~~~~~~~v~~S~~Eiy~e 142 (334)
T cd01375 65 YETVAKPVVDSALDGYNGTIFAYGQTGAGKTFTMTGGTESYKDRGLIPRALEQ--VFREVAMRATKTYTVHVSYLEIYNE 142 (334)
T ss_pred HHHHHHHHHHHHhCCCccceeeecCCCCCCeEEccCCCCcccCCchHHHHHHH--HHHHHHhccCcceEEEEEEEEEECC
Confidence 99999999999999999999999999999999999976 478999999999 999886543 89999988
Q ss_pred eeeEe----------------------------------------------------------ecCcccceeeEEEEEEe
Q psy4062 221 CLILR----------------------------------------------------------RKPSICEKMQLMVYVKM 242 (409)
Q Consensus 221 ~~~~~----------------------------------------------------------~~~ssrsh~i~~i~v~~ 242 (409)
.++|+ +..++|||++|++++.+
T Consensus 143 ~v~DLL~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~~~~g~~~R~~~~t~~n~~sSRSH~i~~l~v~~ 222 (334)
T cd01375 143 QLYDLLGDTPEALESLPAVTILEDSEQNIHVKGLSLHSATTEEEALNLLFLGETNRTIAETSMNQASSRSHCIFTIHLES 222 (334)
T ss_pred EeecCCCCCccccccCCceEEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccCcCcCCcCcCeEEEEEEEEE
Confidence 88776 23488999999999998
Q ss_pred e--ccccceeEEeEEEEeecCCcccccccCCccchhhhhcccchhHHHHHHHHHHHhcCC-CCcccCCchhhHhhhhccC
Q psy4062 243 Q--DKATKQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLADGC-RHVPYRDSKLTRILKDSLG 319 (409)
Q Consensus 243 ~--~~~~~~~~~skL~~VDLAGSEr~~~~~~~~~r~~E~~~IN~SL~aL~~vI~aL~~~~-~~iPyRdSkLT~LLk~sLg 319 (409)
. .........++|+||||||||+..+++..+..++|+..||+||++|++||.+|++++ .||||||||||+||+|+||
T Consensus 223 ~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~e~~~iN~SL~~L~~vi~~l~~~~~~~ipyRdSkLT~lL~d~Lg 302 (334)
T cd01375 223 RSREAGSEVVRLSKLNLVDLAGSERVSKTGVSGQVLKEAKYINKSLSFLEQVINALSEKARTHVPYRNSKLTHVLRDSLG 302 (334)
T ss_pred EecCCCCCceEEEEEEEEECCCCCccccccCchhhhhhhhhhhhhHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHhcC
Confidence 7 444566788999999999999999999999999999999999999999999999998 9999999999999999999
Q ss_pred CCccEEEEEEeCCCCCCHHHHHHHHHHHHHHh
Q psy4062 320 GNCKTVMIANIAPTALSYEDSYNTLKYATRAK 351 (409)
Q Consensus 320 Gn~~t~~I~~isP~~~~~~eTl~TL~fa~rak 351 (409)
|||+|+||+||||...+++||++||+||+|++
T Consensus 303 g~~~t~~I~~vsp~~~~~~eTl~TL~fa~r~~ 334 (334)
T cd01375 303 GNCKTVMLATIWVEPSNLDETLSTLRFAQRVA 334 (334)
T ss_pred CCceEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999985
No 21
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=6.1e-63 Score=492.00 Aligned_cols=262 Identities=33% Similarity=0.537 Sum_probs=236.6
Q ss_pred CCCeEEEEEeCCCCChhhccCCceEEEEeCC--cEEEeCCCCCCCcceeeccccchhhccccCCCceeEeeceEeCCCCC
Q psy4062 70 QSHMKVYIRVRPQSQKEEDGCHREIVKILNR--DTIIFDPKQDDSEFFFHGVKQSLRDINKKKSKEMEFLFDRVYGPSES 147 (409)
Q Consensus 70 ~~~ikV~vRvRP~~~~E~~~~~~~~v~~~~~--~~ii~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~as 147 (409)
+++|+|+||+||+...|. .....++.+.++ +++.++.. ......|.||+||+++++
T Consensus 1 ~~~i~V~vRirP~~~~e~-~~~~~~~~~~~~~~~~i~~~~~---------------------~~~~~~f~fD~vf~~~~~ 58 (329)
T cd01366 1 KGNIRVFCRVRPLLPSES-TEYSSVISFPDEDGGTIELSKG---------------------TGKKKSFSFDRVFDPDAS 58 (329)
T ss_pred CCCEEEEEEcCcCCcccc-CCCccEEEEcCCCceEEEEeCC---------------------CCCceEEecCEEECCCCC
Confidence 368999999999999876 445667777776 56665432 124457999999999999
Q ss_pred chhhhccchHHHHHHHhcCcceEEEeeccCCCCceeeecCCCCCCchhhhhhhhhhHHHhhhhce----------eEEEE
Q psy4062 148 NQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGNENHKGIMYLTMGIRNRVSALTRQM----------CTMRM 217 (409)
Q Consensus 148 Q~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G~~~~~GIi~~~~~~~~lf~~~~~~~----------s~~ei 217 (409)
|++||+. +.|+|+++++|+|+||||||+|||||||||+|+.+++||+|+++.+ +|..+.... |++||
T Consensus 59 q~~v~~~-v~p~v~~~~~G~~~~i~ayG~tgSGKT~tl~G~~~~~Gli~r~~~~--lf~~~~~~~~~~~~~~v~~S~~EI 135 (329)
T cd01366 59 QEDVFEE-VSPLVQSALDGYNVCIFAYGQTGSGKTYTMEGPPENPGIIPRALEQ--LFNTAEELKEKGWSYTITASMLEI 135 (329)
T ss_pred HHHHHHH-HHHHHHHHhCCCceEEEEeCCCCCCCcEEecCCCCCCCcHHHHHHH--HHHHHHhhhccCceEEEEEEEEEE
Confidence 9999997 5999999999999999999999999999999999999999999999 998775542 89999
Q ss_pred EeceeeEe-------------------------------------------------------ecCcccceeeEEEEEEe
Q psy4062 218 YKTCLILR-------------------------------------------------------RKPSICEKMQLMVYVKM 242 (409)
Q Consensus 218 y~~~~~~~-------------------------------------------------------~~~ssrsh~i~~i~v~~ 242 (409)
|++.++|+ +..++|+|++|++.+.+
T Consensus 136 y~e~v~DLL~~~~~~~~~l~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~sSRsH~i~~i~v~~ 215 (329)
T cd01366 136 YNETIRDLLATKPAPKKKLEIKHDSKGETYVTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRG 215 (329)
T ss_pred ECCEeEECCCCCcCCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhcccccccccCCCCCccEEEEEEEEE
Confidence 99888876 12378999999999999
Q ss_pred eccccceeEEeEEEEeecCCcccccccCCccchhhhhcccchhHHHHHHHHHHHhcCCCCcccCCchhhHhhhhccCCCc
Q psy4062 243 QDKATKQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLADGCRHVPYRDSKLTRILKDSLGGNC 322 (409)
Q Consensus 243 ~~~~~~~~~~skL~~VDLAGSEr~~~~~~~~~r~~E~~~IN~SL~aL~~vI~aL~~~~~~iPyRdSkLT~LLk~sLgGn~ 322 (409)
.+........++|+||||||+|+..+.++.+.+++|+..||+||.+|++||.+|+.+..|||||+||||+||+++|||++
T Consensus 216 ~~~~~~~~~~s~l~~VDLaGsE~~~~~~~~~~~~~e~~~in~Sl~~L~~vl~~l~~~~~~ipyr~S~LT~lL~~~l~g~~ 295 (329)
T cd01366 216 TNLQTGEQTRGKLNLVDLAGSERLKKSGATGDRLKEAQAINKSLSALGDVISALRSKDSHVPYRNSKLTYLLQDSLGGNS 295 (329)
T ss_pred EcCCCCcEEEEEEEEEECCCCcccccccccchhhHhHhhhhhHHHHHHHHHHHHhcCCCcCCCcccHhHHHHHHhcCCCc
Confidence 88777788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEeCCCCCCHHHHHHHHHHHHHHhcCccc
Q psy4062 323 KTVMIANIAPTALSYEDSYNTLKYATRAKKIKAK 356 (409)
Q Consensus 323 ~t~~I~~isP~~~~~~eTl~TL~fa~rak~Ik~~ 356 (409)
+|+||+||||...+++||++||+||++|++|++.
T Consensus 296 ~t~~i~~vsp~~~~~~etl~tL~~a~~~~~i~~~ 329 (329)
T cd01366 296 KTLMFVNISPLESNLSETLCSLRFASRVRSVELG 329 (329)
T ss_pred eEEEEEEeCCchhhHHHHHHHHHHHHHhhcccCC
Confidence 9999999999999999999999999999999873
No 22
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=1.2e-61 Score=483.75 Aligned_cols=268 Identities=40% Similarity=0.654 Sum_probs=241.9
Q ss_pred CeEEEEEeCCCCChhhccCCceEEEEeCCc--EEEeCCCCCCCcceeeccccchhhccccCCCceeEeeceEeCCCCCch
Q psy4062 72 HMKVYIRVRPQSQKEEDGCHREIVKILNRD--TIIFDPKQDDSEFFFHGVKQSLRDINKKKSKEMEFLFDRVYGPSESNQ 149 (409)
Q Consensus 72 ~ikV~vRvRP~~~~E~~~~~~~~v~~~~~~--~ii~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~asQ~ 149 (409)
+|+|+|||||+...|...+...++.+.+++ .+.+..... ......|.||+||+++++|+
T Consensus 1 ~v~v~vRvrP~~~~e~~~~~~~~~~~~~~~~~~v~~~~~~~-------------------~~~~~~f~fD~vf~~~~~q~ 61 (335)
T smart00129 1 NIRVVVRVRPLNKREKSRKSPSVVPFDDKDGKTLNVNSPKN-------------------RKEEKKFTFDKVFGATASQE 61 (335)
T ss_pred CcEEEEEcCcCCccchhcCCceEEEEcCCCCCEEEEeCCCC-------------------CCCCeEEecCEEECCCCChH
Confidence 589999999999999888888899987763 444333221 23557899999999999999
Q ss_pred hhhccchHHHHHHHhcCcceEEEeeccCCCCceeeecCCCCCCchhhhhhhhhhHHHhhhhce---------eEEEEEec
Q psy4062 150 DVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGNENHKGIMYLTMGIRNRVSALTRQM---------CTMRMYKT 220 (409)
Q Consensus 150 eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G~~~~~GIi~~~~~~~~lf~~~~~~~---------s~~eiy~~ 220 (409)
+||+.++.|+|+++++|+|+||||||+|||||||||+|+.+++||+|+++.+ +|..+.... |++|||++
T Consensus 62 ~v~~~~~~p~v~~~~~G~~~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~--Lf~~~~~~~~~~~~~v~~S~~ei~~e 139 (335)
T smart00129 62 DVFEETAAPLVDSVLEGYNATIFAYGQTGSGKTYTMSGTPDSPGIIPRALKD--LFEKIDKLEEGWQFQVKVSYLEIYNE 139 (335)
T ss_pred HHHHHHHHHHHHHHhcCCceeEEEeCCCCCCCceEecCCCCCCCHHHHHHHH--HHHHhhhcccCceEEEEEEEEEEECC
Confidence 9999999999999999999999999999999999999999999999999999 999886532 89999999
Q ss_pred eeeEe----------------------------------------------------ecCcccceeeEEEEEEee--ccc
Q psy4062 221 CLILR----------------------------------------------------RKPSICEKMQLMVYVKMQ--DKA 246 (409)
Q Consensus 221 ~~~~~----------------------------------------------------~~~ssrsh~i~~i~v~~~--~~~ 246 (409)
.++|+ +..++|+|++|++++.+. +..
T Consensus 140 ~v~DLL~~~~~~l~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRsH~i~~l~v~~~~~~~~ 219 (335)
T smart00129 140 KIRDLLNPSPKKLEIREDKKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVESKIKNSS 219 (335)
T ss_pred EEEECcCCCCCCcEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhccccccCCCCCCCCcceEEEEEEEEEEecCCC
Confidence 88887 223789999999999966 555
Q ss_pred cceeEEeEEEEeecCCcccccccCCccchhhhhcccchhHHHHHHHHHHHhcC--CCCcccCCchhhHhhhhccCCCccE
Q psy4062 247 TKQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLADG--CRHVPYRDSKLTRILKDSLGGNCKT 324 (409)
Q Consensus 247 ~~~~~~skL~~VDLAGSEr~~~~~~~~~r~~E~~~IN~SL~aL~~vI~aL~~~--~~~iPyRdSkLT~LLk~sLgGn~~t 324 (409)
......++|+||||||+|+....++.+.+++|+..||+||.+|++||.+|+++ ..|+|||+|+||+||+++|+|++++
T Consensus 220 ~~~~~~s~l~~VDLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~~l~~l~~~~~~~~ip~r~S~LT~lL~~~L~g~~~~ 299 (335)
T smart00129 220 SGSGKASKLNLVDLAGSERASKTGAEGDRLKEAGNINKSLSALGNVINALADGQKSRHIPYRDSKLTRLLQDSLGGNSKT 299 (335)
T ss_pred CCCEEEEEEEEEECCCCCccccccChhHHHHhhchhhhHHHHHHHHHHHHHhcCCCCCCCCcCcHhHHHHHHHcCCCCeE
Confidence 67788999999999999999999999999999999999999999999999994 5799999999999999999999999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHHhcCcccceee
Q psy4062 325 VMIANIAPTALSYEDSYNTLKYATRAKKIKAKVSRT 360 (409)
Q Consensus 325 ~~I~~isP~~~~~~eTl~TL~fa~rak~Ik~~~~~n 360 (409)
+||+||||...+++||++||+||+++++|+++|++|
T Consensus 300 ~~i~~vsp~~~~~~eTl~tL~~a~~~~~i~~~p~~~ 335 (335)
T smart00129 300 LMIANISPSLSNLEETLSTLRFASRAKEIKNKAIVN 335 (335)
T ss_pred EEEEEcCCCccchHHHHHHHHHHHHHhhcccCCCcC
Confidence 999999999999999999999999999999999865
No 23
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=3.6e-60 Score=471.53 Aligned_cols=260 Identities=38% Similarity=0.675 Sum_probs=233.8
Q ss_pred CeEEEEEeCCCCChhhccCCceEEEEeCCcEEEeCCCCCCCcceeeccccchhhccccCCCceeEeeceEeCCCCCchhh
Q psy4062 72 HMKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKSKEMEFLFDRVYGPSESNQDV 151 (409)
Q Consensus 72 ~ikV~vRvRP~~~~E~~~~~~~~v~~~~~~~ii~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~asQ~eV 151 (409)
+|+|+||+||+...| ..+...++.+.+++.+++.++... ....+..|.||+||+++++|++|
T Consensus 1 ~i~V~vRvrP~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~-----------------~~~~~~~f~fd~vf~~~~~q~~v 62 (328)
T cd00106 1 NIRVVVRIRPLNGRE-SKSEESCITVDDNKTVTLTPPKDG-----------------RKAGPKSFTFDHVFDPNSTQEDV 62 (328)
T ss_pred CeEEEEEcCCCCccc-ccCCCcEEEECCCCEEEEecCccc-----------------cCcCceEEECCeEEcCCCCHHHH
Confidence 589999999999877 445678899988666665543321 12356789999999999999999
Q ss_pred hccchHHHHHHHhcCcceEEEeeccCCCCceeeecCCCCCCchhhhhhhhhhHHHhhhhc----------eeEEEEEece
Q psy4062 152 YDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGNENHKGIMYLTMGIRNRVSALTRQ----------MCTMRMYKTC 221 (409)
Q Consensus 152 f~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G~~~~~GIi~~~~~~~~lf~~~~~~----------~s~~eiy~~~ 221 (409)
|+.++.|+|+++++|+|+||||||+|||||||||+|+.+++||+|+++.+ +|..+... .|++|||++.
T Consensus 63 ~~~~~~~~v~~~~~G~~~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~--Lf~~~~~~~~~~~~~~v~~S~~Ei~~e~ 140 (328)
T cd00106 63 YETTAKPLVESVLEGYNGTIFAYGQTGSGKTYTMFGSPKDPGIIPRALED--LFNLIDERKEKNKSFSVSVSYLEIYNEK 140 (328)
T ss_pred HHHHHHHHHHHHhCCCceeEEEecCCCCCCeEEecCCCCCCchHHHHHHH--HHHHHhhccccCceEEEEEEEEEEECCE
Confidence 99999999999999999999999999999999999999999999999999 99988654 2899999988
Q ss_pred eeEe------------------------------------------------------ecCcccceeeEEEEEEeecccc
Q psy4062 222 LILR------------------------------------------------------RKPSICEKMQLMVYVKMQDKAT 247 (409)
Q Consensus 222 ~~~~------------------------------------------------------~~~ssrsh~i~~i~v~~~~~~~ 247 (409)
++|+ +..++|+|++|++.+.......
T Consensus 141 v~DLL~~~~~~~~l~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~ 220 (328)
T cd00106 141 VYDLLSPEPPSKPLSLREDPKGGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRNTTN 220 (328)
T ss_pred eEECCCCCCCCCCcEEEEcCCCCEEEeCCEEEEeCCHHHHHHHHHHHHhhcCcccCcCCCCcCcCcEEEEEEEEEEecCC
Confidence 8876 1236899999999999888765
Q ss_pred ce--eEEeEEEEeecCCcccccccCCccchhhhhcccchhHHHHHHHHHHHhcCC--CCcccCCchhhHhhhhccCCCcc
Q psy4062 248 KQ--MKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLADGC--RHVPYRDSKLTRILKDSLGGNCK 323 (409)
Q Consensus 248 ~~--~~~skL~~VDLAGSEr~~~~~~~~~r~~E~~~IN~SL~aL~~vI~aL~~~~--~~iPyRdSkLT~LLk~sLgGn~~ 323 (409)
.. ...++|+||||||+|+....+..+.+++|+..||+||.+|++||.+|+.++ .|||||+||||+||+|+|+|+++
T Consensus 221 ~~~~~~~s~l~~VDLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~vl~~l~~~~~~~~ip~r~SkLT~lL~~~l~g~~~ 300 (328)
T cd00106 221 DGRSIKSSKLNLVDLAGSERAKKTGAEGDRLKEAKNINKSLSALGNVISALSSGQKKKHIPYRDSKLTRLLQDSLGGNSK 300 (328)
T ss_pred CCccEEEEEEEEEECCCCCcccccCCchhhhHhHHhhhhhHHHHHHHHHHHHhcCCCCcCCCcCcHHHHHHHHhcCCCCe
Confidence 54 789999999999999999999999999999999999999999999999998 99999999999999999999999
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHHHh
Q psy4062 324 TVMIANIAPTALSYEDSYNTLKYATRAK 351 (409)
Q Consensus 324 t~~I~~isP~~~~~~eTl~TL~fa~rak 351 (409)
|+||+||+|...+++||++||+||+|||
T Consensus 301 t~~I~~vsp~~~~~~eTl~tL~~a~r~~ 328 (328)
T cd00106 301 TLMIANISPSSENYDETLSTLRFASRAK 328 (328)
T ss_pred EEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999986
No 24
>KOG0246|consensus
Probab=100.00 E-value=9.2e-60 Score=474.54 Aligned_cols=271 Identities=32% Similarity=0.474 Sum_probs=233.3
Q ss_pred CCCeEEEEEeCCCCChhhccCCceEEEEeCCcEEEeCCCCCCCcceeeccccchhhccccCCCceeEeeceEeCCCCCch
Q psy4062 70 QSHMKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKSKEMEFLFDRVYGPSESNQ 149 (409)
Q Consensus 70 ~~~ikV~vRvRP~~~~E~~~~~~~~v~~~~~~~ii~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~asQ~ 149 (409)
...|.||||-||++.+|.......+|.+...++++++.+..... + .+--..++|.||++||+.++++
T Consensus 207 ehrI~VCVRKRPLnkkE~~~keiDvisvps~~~l~vHEpk~kVD------------L-tkYlEn~~F~FDyaFDe~~sNe 273 (676)
T KOG0246|consen 207 EHRICVCVRKRPLNKKELTKKEIDVISVPSKNVLVVHEPKLKVD------------L-TKYLENQKFRFDYAFDESASNE 273 (676)
T ss_pred cceEEEEeecCCCCchhccccccceEeccccceEEeeccccccc------------h-HHHHhhceEEEeeecccccchH
Confidence 45899999999999999988889999998777776655443221 0 0122456899999999999999
Q ss_pred hhhccchHHHHHHHhcCcceEEEeeccCCCCceeeecCCC------CCCchhhhhhhhhhHHHhhhhce----------e
Q psy4062 150 DVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGNE------NHKGIMYLTMGIRNRVSALTRQM----------C 213 (409)
Q Consensus 150 eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G~~------~~~GIi~~~~~~~~lf~~~~~~~----------s 213 (409)
+||..+++|||..+|+|--+|+||||||||||||||.|+- ...||..++..+ .|..+.... +
T Consensus 274 ~VYrfTa~PlV~~IF~~G~ATCFAYGQTGSGKT~TMggdfsgk~q~~s~giya~aa~D--vf~~L~~p~Y~~~~l~v~~t 351 (676)
T KOG0246|consen 274 LVYRFTAKPLVKTIFEGGMATCFAYGQTGSGKTYTMGGDFSGKAQDCSKGIYALAARD--VFRLLRQPTYRKLDLKVYVT 351 (676)
T ss_pred HHHHHhhhHHHHHHHhCCceeeeeeccCCCCceeecccccCcccccccccchhhhhhH--HHHHhcccchhhcceEEEEE
Confidence 9999999999999999999999999999999999998863 345998888888 777665432 9
Q ss_pred EEEEEeceeeEe---------------------------------------------------ecCcccceeeEEEEEEe
Q psy4062 214 TMRMYKTCLILR---------------------------------------------------RKPSICEKMQLMVYVKM 242 (409)
Q Consensus 214 ~~eiy~~~~~~~---------------------------------------------------~~~ssrsh~i~~i~v~~ 242 (409)
|+|||..+++|+ +..|||||++|+|.++.
T Consensus 352 FFEIYgGKvfDLL~~k~KLrvLEDg~QQVqVVGLqE~~v~~~eeVl~lIe~Gns~RtsG~TsANs~SSRSHAvfQIilr~ 431 (676)
T KOG0246|consen 352 FFEIYGGKVYDLLNDKKKLRVLEDGNQQVQVVGLQEEEVSGVEEVLELIEKGNSCRTSGQTSANSNSSRSHAVFQIILRK 431 (676)
T ss_pred EEEEeCcchhhhhccccceEEeecCCceEEEeeceeeeccCHHHHHHHHHhcccccccCcccCcccccccceeEeeeeec
Confidence 999998888776 34599999999999986
Q ss_pred eccccceeEEeEEEEeecCCcccccccC-CccchhhhhcccchhHHHHHHHHHHHhcCCCCcccCCchhhHhhhhccCC-
Q psy4062 243 QDKATKQMKMVKLSMIDLAGSERAAANS-SNQMRFKEGSNINKSLLALGNCINSLADGCRHVPYRDSKLTRILKDSLGG- 320 (409)
Q Consensus 243 ~~~~~~~~~~skL~~VDLAGSEr~~~~~-~~~~r~~E~~~IN~SL~aL~~vI~aL~~~~~~iPyRdSkLT~LLk~sLgG- 320 (409)
... ....||+.||||||+||...+. +..+...||+.||+||+||..||+||..++.|+|||.||||.+|+|+|-|
T Consensus 432 ~~~---~k~hGKfSlIDLAGnERGaDts~adRqtRlEGAEINKSLLALKECIRaLg~nk~H~PFR~SKLTqVLRDSFIGe 508 (676)
T KOG0246|consen 432 HGE---FKLHGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKSHLPFRGSKLTQVLRDSFIGE 508 (676)
T ss_pred CCc---ceeEeEEEEEEccCCccCCcccccchhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhHHHHHHHhhcCC
Confidence 542 3458999999999999987664 55567789999999999999999999999999999999999999999988
Q ss_pred CccEEEEEEeCCCCCCHHHHHHHHHHHHHHhcCcccce
Q psy4062 321 NCKTVMIANIAPTALSYEDSYNTLKYATRAKKIKAKVS 358 (409)
Q Consensus 321 n~~t~~I~~isP~~~~~~eTl~TL~fa~rak~Ik~~~~ 358 (409)
|++|+||+||||.....+.||+|||||+|+|++.....
T Consensus 509 nSrTcMIA~ISPg~~ScEhTLNTLRYAdRVKeLsv~~~ 546 (676)
T KOG0246|consen 509 NSRTCMIATISPGISSCEHTLNTLRYADRVKELSVDGG 546 (676)
T ss_pred CCceEEEEEeCCCcchhhhhHHHHHHHHHHHhhcCCCC
Confidence 99999999999999999999999999999999877654
No 25
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=3.7e-60 Score=472.76 Aligned_cols=258 Identities=38% Similarity=0.635 Sum_probs=221.6
Q ss_pred EeCCCCChhhccCCceEEEEeCCcEEEeCCCCCCCcceeeccccchhhccccCCCceeEeeceEeCCCCCchhhhccchH
Q psy4062 78 RVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKSKEMEFLFDRVYGPSESNQDVYDGSTK 157 (409)
Q Consensus 78 RvRP~~~~E~~~~~~~~v~~~~~~~ii~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~asQ~eVf~~~~~ 157 (409)
||||+++.|...+...++.+.+...... ..............|.||+||+++++|++||+.++.
T Consensus 1 RvRP~~~~e~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~ 64 (335)
T PF00225_consen 1 RVRPLNESEKESSAESIVSVDNQDSNQN----------------KQSVNSNNSQKEKSFRFDRVFDEDATQEDVYEEVVS 64 (335)
T ss_dssp EEES-CHHHHHTTTEBCEEEETTETEEE----------------EEETTEEETTEEEEEEESEEEETTSTHHHHHHHHTH
T ss_pred CcCCCCHHHHhCCCcEEEEecCCccccc----------------cccccccCCCCceEEEcCeEECCCCCHHHHHHHHHH
Confidence 8999999998888887777754210000 000001123566789999999999999999999999
Q ss_pred HHHHHHhcCcceEEEeeccCCCCceeeecCC--CCCCchhhhhhhhhhHHHhhhhc-----------eeEEEEEeceeeE
Q psy4062 158 DIIASLLEGYNCSVFVYGATGAGKTHTMLGN--ENHKGIMYLTMGIRNRVSALTRQ-----------MCTMRMYKTCLIL 224 (409)
Q Consensus 158 plV~~vl~G~N~tI~aYGqTGSGKTyTm~G~--~~~~GIi~~~~~~~~lf~~~~~~-----------~s~~eiy~~~~~~ 224 (409)
|+|+++++|+|+||||||+|||||||||+|+ ..++||+|+++.+ +|..+... .|++|||++.++|
T Consensus 65 ~~v~~~l~G~n~~i~ayG~tgSGKT~Tm~G~~~~~~~Gli~~~~~~--lf~~~~~~~~~~~~~~~v~vS~~EIy~e~v~D 142 (335)
T PF00225_consen 65 PLVDSVLDGYNATIFAYGQTGSGKTYTMFGSNDPSEPGLIPRALRD--LFSQIEERKEKSGYEFSVSVSYLEIYNEKVYD 142 (335)
T ss_dssp HHHHHHHTT-EEEEEEEESTTSSHHHHHTBSTSTTTBSHHHHHHHH--HHHHHHHHTTTSTEEEEEEEEEEEEETTEEEE
T ss_pred HHHHHhhcCCceEEEeeccccccccccccccccccccchhhhHHHH--Hhhhhccccccccccccccccchhhhhhhhhh
Confidence 9999999999999999999999999999999 8999999999999 99888652 1899999888777
Q ss_pred e---------------------------------------------------------ecCcccceeeEEEEEEeecccc
Q psy4062 225 R---------------------------------------------------------RKPSICEKMQLMVYVKMQDKAT 247 (409)
Q Consensus 225 ~---------------------------------------------------------~~~ssrsh~i~~i~v~~~~~~~ 247 (409)
+ +..++|+|++|++.+.+.....
T Consensus 143 LL~~~~~~~~~~l~i~~~~~~g~~~i~~l~~~~v~s~~~~~~~l~~~~~~R~~~~t~~n~~sSRSH~i~~i~v~~~~~~~ 222 (335)
T PF00225_consen 143 LLSPNNSKSRKPLKIREDSNKGSVYIKGLTEVEVKSAEEALQLLKKGQKNRRTASTKMNARSSRSHAIFTIHVEQKDRDP 222 (335)
T ss_dssp TTSTTSSSTTSEBEEEEETTTEEEEETTSEEEEESSHHHHHHHHHHHHHHHTCTSSSCTHHGGGSEEEEEEEEEEEETTT
T ss_pred hcCccccccccccceeeccccccceeeccccccccccccccccccchhhccccccccccccccccccccccccccccccc
Confidence 6 1127899999999999987664
Q ss_pred c----eeEEeEEEEeecCCcccccccCC-ccchhhhhcccchhHHHHHHHHHHHhcC--CCCcccCCchhhHhhhhccCC
Q psy4062 248 K----QMKMVKLSMIDLAGSERAAANSS-NQMRFKEGSNINKSLLALGNCINSLADG--CRHVPYRDSKLTRILKDSLGG 320 (409)
Q Consensus 248 ~----~~~~skL~~VDLAGSEr~~~~~~-~~~r~~E~~~IN~SL~aL~~vI~aL~~~--~~~iPyRdSkLT~LLk~sLgG 320 (409)
. ....++|+||||||+|+..+..+ .+.+++|+..||+||.+|++||.+|+++ ..|+|||+||||+||+|+|||
T Consensus 223 ~~~~~~~~~s~l~~vDLaGsE~~~~~~~~~~~~~~e~~~in~Sl~~L~~vi~~L~~~~~~~~vpyr~SkLT~lL~d~l~g 302 (335)
T PF00225_consen 223 SDDEESVKHSRLTFVDLAGSERLKKSGASDGQRLKESSNINKSLSALGNVIRALAQGSKQSHVPYRDSKLTRLLKDSLGG 302 (335)
T ss_dssp TTEEEEEEEEEEEEEEEEESTGGCGCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSTSSSCGGGSHHHHHTGGGTSS
T ss_pred cccccceeecceeeeecccccccccccccccccccccceecchhhhhhhhHhhhhccccchhhhhhcccccceecccccc
Confidence 3 26899999999999999998886 4788999999999999999999999999 899999999999999999999
Q ss_pred CccEEEEEEeCCCCCCHHHHHHHHHHHHHHhcC
Q psy4062 321 NCKTVMIANIAPTALSYEDSYNTLKYATRAKKI 353 (409)
Q Consensus 321 n~~t~~I~~isP~~~~~~eTl~TL~fa~rak~I 353 (409)
||+|+||+||+|...+++||++||+||+++|+|
T Consensus 303 ~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~I 335 (335)
T PF00225_consen 303 NSKTILIVCVSPSSEDYEETLSTLRFASRAREI 335 (335)
T ss_dssp SSEEEEEEEE-SBGGGHHHHHHHHHHHHHHTTE
T ss_pred cccceeEEEcCCccccHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999987
No 26
>KOG0247|consensus
Probab=100.00 E-value=4.8e-58 Score=473.45 Aligned_cols=280 Identities=30% Similarity=0.517 Sum_probs=245.9
Q ss_pred CCCCeEEEEEeCCCCChhhccCCceEEEEeCCcEEEeCCCCCCCcceeeccccchhhccccCCCceeEeeceEeCCCCCc
Q psy4062 69 EQSHMKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKSKEMEFLFDRVYGPSESN 148 (409)
Q Consensus 69 ~~~~ikV~vRvRP~~~~E~~~~~~~~v~~~~~~~ii~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~asQ 148 (409)
....+.||||+||+.+ ..+...|+.+.|..++++..+.+.... +. ......+..|.|.+||+|+++|
T Consensus 29 ~~d~v~v~~rvrP~~~---~~~~~g~l~v~n~~tivL~~P~d~~~~---------~~-~n~~q~e~~fsFt~VF~p~~tQ 95 (809)
T KOG0247|consen 29 SKDPVLVVCRVRPLSD---ASEDEGCLRVINEETIVLETPEDSFAR---------RS-VNGGQMEKKFSFTKVFGPSVTQ 95 (809)
T ss_pred hhcchheeEeecCCCC---CccccceEEEeccceeEeeCcHHHHhh---------hc-cCccceeeEeeeeeecCCCccH
Confidence 3668999999999986 344577899999999998866654321 00 1224567899999999999999
Q ss_pred hhhhccchHHHHHHHhcCcceEEEeeccCCCCceeeecCCCCCCchhhhhhhhhhHHHhhhhce----------------
Q psy4062 149 QDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGNENHKGIMYLTMGIRNRVSALTRQM---------------- 212 (409)
Q Consensus 149 ~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G~~~~~GIi~~~~~~~~lf~~~~~~~---------------- 212 (409)
.+||+.++.|+|.+++.|.|..+|+||.|||||||||+|++.++||+||++.. +|..+....
T Consensus 96 ~dvF~~~~~plV~dlLkgqn~LlFTyGVTgSGKTYTm~G~~~~~GIlPR~Ld~--iF~siq~~~~~k~~~kp~~s~~~e~ 173 (809)
T KOG0247|consen 96 ADVFDTTVAPLVKDLLKGQNSLLFTYGVTGSGKTYTMTGTPDRPGILPRALDV--IFNSIQGRQAKKPVFKPLRSNLFEI 173 (809)
T ss_pred HHHHHHHhHHHHHHHHcccceeEEEeeccCCCceEEeecCCCCCCchHHHHHH--HHHHhhceeccCceeccccchHHHH
Confidence 99999999999999999999999999999999999999999999999999988 776554321
Q ss_pred ---------------------------------------------------------eEEEEEeceeeEe----------
Q psy4062 213 ---------------------------------------------------------CTMRMYKTCLILR---------- 225 (409)
Q Consensus 213 ---------------------------------------------------------s~~eiy~~~~~~~---------- 225 (409)
||+|||++.++|+
T Consensus 174 ~~~~~alL~lkr~~~~nd~~~ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV~VSf~EIYN~~iYDLLe~~s~q~~~ 253 (809)
T KOG0247|consen 174 KAEEDALLQLKREAMLNDRKSTSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSVFVSFVEIYNNYIYDLLEDASFQGKL 253 (809)
T ss_pred HHHHHHHHhhhhhhccccccCcchhhccccHHHHhhcchhcccccccCcCcEEEEEeeHHHHHHHHHHHhhccccccchh
Confidence 7899998888776
Q ss_pred ------------------------------------------------ecCcccceeeEEEEEEeeccc--cceeEEeEE
Q psy4062 226 ------------------------------------------------RKPSICEKMQLMVYVKMQDKA--TKQMKMVKL 255 (409)
Q Consensus 226 ------------------------------------------------~~~ssrsh~i~~i~v~~~~~~--~~~~~~skL 255 (409)
+..|||||.||+|.+-+.... ...++.+.|
T Consensus 254 ~~~~ll~~d~~~~~~Vkgl~~V~VssseEA~~l~~lGqk~r~~asT~lN~~SSRSHsVFtIkl~q~~~~~~s~~i~vSql 333 (809)
T KOG0247|consen 254 QKLKLLREDTNGNMYVKGLTEVEVSSSEEALELFQLGQKRRRVASTKLNANSSRSHSVFTIKLVQAPRSQDSNQITVSQL 333 (809)
T ss_pred hhhhhhhhccCCCeeeccccEEEeccHHHHHHHHHHHHhhhhhhheeccccccccceeEEEEeeecccccccCceeEEee
Confidence 345999999999999887766 678899999
Q ss_pred EEeecCCcccccccCCccchhhhhcccchhHHHHHHHHHHHhcCC-----CCcccCCchhhHhhhhccCCCccEEEEEEe
Q psy4062 256 SMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLADGC-----RHVPYRDSKLTRILKDSLGGNCKTVMIANI 330 (409)
Q Consensus 256 ~~VDLAGSEr~~~~~~~~~r~~E~~~IN~SL~aL~~vI~aL~~~~-----~~iPyRdSkLT~LLk~sLgGn~~t~~I~~i 330 (409)
.|||||||||..++.+.|.|++|+.+||.||++||.||.+|.+++ .+|||||||||++++.+|.|+.+.+||+||
T Consensus 334 sLvDLAGSERt~rtq~sG~RLrEagNINtSLmTLg~Cie~LR~nqk~ks~~~VPyRdSKLThlfq~~f~G~gki~MIV~v 413 (809)
T KOG0247|consen 334 SLVDLAGSERTNRTQNSGERLREAGNINTSLMTLRRCIDVLRENQKSKSQKIVPYRDSKLTHLFKNYFDGKGKIRMIVCV 413 (809)
T ss_pred eeeecccchhcccccchhHHHHhhccccHHHHHHHHHHHHHHHHhhhhccccCcchHHHHHHHHHHhcCCCCcEEEEEec
Confidence 999999999999999999999999999999999999999998764 799999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHhcCcccceeeccC
Q psy4062 331 APTALSYEDSYNTLKYATRAKKIKAKVSRTFKS 363 (409)
Q Consensus 331 sP~~~~~~eTl~TL~fa~rak~Ik~~~~~n~~~ 363 (409)
+|...+|+|+++.|+||+-|+.|.....++...
T Consensus 414 np~~e~YdEnl~vlkFaeiaq~v~v~~~~~~~~ 446 (809)
T KOG0247|consen 414 NPKAEDYDENLNVLKFAEIAQEVEVARPVIKKQ 446 (809)
T ss_pred CCchhhHHHHHHHHHHHHhcccccccCcccccC
Confidence 999999999999999999999999876665433
No 27
>KOG0244|consensus
Probab=100.00 E-value=9.8e-57 Score=475.49 Aligned_cols=258 Identities=36% Similarity=0.561 Sum_probs=228.2
Q ss_pred eCCCCChhhccCCceEEEEeCCc-EEEeCCCCCCCcceeeccccchhhccccCCCceeEeeceEeCCCCCchhhhccchH
Q psy4062 79 VRPQSQKEEDGCHREIVKILNRD-TIIFDPKQDDSEFFFHGVKQSLRDINKKKSKEMEFLFDRVYGPSESNQDVYDGSTK 157 (409)
Q Consensus 79 vRP~~~~E~~~~~~~~v~~~~~~-~ii~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~asQ~eVf~~~~~ 157 (409)
|||+...|...|.+.|+.+.... .+. -+....|+||+||+...+|.++|+.++.
T Consensus 1 vRpl~~~e~~~g~~~c~~~~~~~pqv~-------------------------ig~~~s~t~d~v~~~~~~Q~~~~e~~V~ 55 (913)
T KOG0244|consen 1 VRPLKQMEEEQGCRRCTEVSPRTPQVA-------------------------IGKDASFTYDKVFLDLESQKEVYESCVR 55 (913)
T ss_pred CCCccchHHHhcchhhcccCCCCCcee-------------------------ecCCcceeeeeeccCchHHHHHHHHHHH
Confidence 59999999988888888743322 111 1344579999999999999999999999
Q ss_pred HHHHHHhcCcceEEEeeccCCCCceeeecCC----CCCCchhhhhhhhhhHHHhhhhce--------eEEEEEeceeeEe
Q psy4062 158 DIIASLLEGYNCSVFVYGATGAGKTHTMLGN----ENHKGIMYLTMGIRNRVSALTRQM--------CTMRMYKTCLILR 225 (409)
Q Consensus 158 plV~~vl~G~N~tI~aYGqTGSGKTyTm~G~----~~~~GIi~~~~~~~~lf~~~~~~~--------s~~eiy~~~~~~~ 225 (409)
|+++.+++|||+|++|||||||||||||.+. .++.|+||+++.. +|..+.... +|+|+|++.++|+
T Consensus 56 ~l~~~lf~gynatvlaygQtgsgkTytmgt~~~~~~~~~Gvipr~v~~--~f~~i~~~~~~~f~i~vs~vely~e~v~dl 133 (913)
T KOG0244|consen 56 PLREKLFAGYNATVLAYGQTGSGKTYTMGTNDAPAQDTVGVIPRAVST--LFTRIGKTESFVFRITVSFVELYNEEVLDL 133 (913)
T ss_pred HHHHHHhhhhcceeeeecccCCCceeecccccccccccCCcCcchHHH--HHHHHHhhhccceeeeeeeeeccchhhhhh
Confidence 9999999999999999999999999999876 3345999999999 999987765 6899997766554
Q ss_pred -----------------------------------------------------ecCcccceeeEEEEEEeeccc-cceeE
Q psy4062 226 -----------------------------------------------------RKPSICEKMQLMVYVKMQDKA-TKQMK 251 (409)
Q Consensus 226 -----------------------------------------------------~~~ssrsh~i~~i~v~~~~~~-~~~~~ 251 (409)
+..++|+|++|++++++.... .....
T Consensus 134 ~~~~~~~~~i~~~e~~g~it~~glte~tv~~~~q~~~~L~~g~~~RtvasTnMN~qssRshAifti~lkq~kk~~~~s~~ 213 (913)
T KOG0244|consen 134 LKPSRLKANIKLREPKGEITIRGLTEKTVRMKLQLLSRLEKGSLERTVASTNMNAQSSRSHAIFTITLKQRKKLSKRSSF 213 (913)
T ss_pred cChhhhhhceeccccCCceEEEeehHHHHHHHHHHHHHHHhchHHHHHHHHhcchhhhhhhHHHHHHHHHHHHhhccchh
Confidence 334899999999999875544 33456
Q ss_pred EeEEEEeecCCcccccccCCccchhhhhcccchhHHHHHHHHHHHhcCCC--CcccCCchhhHhhhhccCCCccEEEEEE
Q psy4062 252 MVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLADGCR--HVPYRDSKLTRILKDSLGGNCKTVMIAN 329 (409)
Q Consensus 252 ~skL~~VDLAGSEr~~~~~~~~~r~~E~~~IN~SL~aL~~vI~aL~~~~~--~iPyRdSkLT~LLk~sLgGn~~t~~I~~ 329 (409)
.+||+|||||||||.++++++|+|++||.+||.+|++||+||.||.+.+. |+|||+||||||||++||||+.|+||+|
T Consensus 214 ~sKlhlVDLAGSER~kkT~a~gdrlKEgInIN~gLL~LgnVIsaLg~~kk~~~vpyRdSkltrlLQdslgGns~tlmiaC 293 (913)
T KOG0244|consen 214 CSKLHLVDLAGSERVKKTKAEGDRLKEGININGGLLALGNVISALGEAKKGGEVPYRDSKLTRLLQDSLGGNSDTLMIAC 293 (913)
T ss_pred hhhhheeeccccccccccccchhhhhhccCcchHHHHHHHHHHHHHhhhcCCcccchHHHHHHHHHHHhcCCcceeeeee
Confidence 78999999999999999999999999999999999999999999998875 9999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHHHhcCcccceeeccC
Q psy4062 330 IAPTALSYEDSYNTLKYATRAKKIKAKVSRTFKS 363 (409)
Q Consensus 330 isP~~~~~~eTl~TL~fa~rak~Ik~~~~~n~~~ 363 (409)
|||+..+.+||++||+||.||+.|+|+|++|.+.
T Consensus 294 iSpadsn~~EtlnTl~ya~Rak~iknk~vvN~d~ 327 (913)
T KOG0244|consen 294 ISPADSNAQETLNTLRYADRAKQIKNKPVVNQDP 327 (913)
T ss_pred cChhhhhhhhHHHHHHHhhHHHHhcccccccccH
Confidence 9999999999999999999999999999999933
No 28
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.1e-52 Score=443.34 Aligned_cols=227 Identities=45% Similarity=0.724 Sum_probs=212.7
Q ss_pred ceeEeeceEeCCCCCchhhhccchHHHHHHHhcCcceEEEeeccCCCCceeeecCCCCCCchhhhhhhhhhHHHhhhhce
Q psy4062 133 EMEFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGNENHKGIMYLTMGIRNRVSALTRQM 212 (409)
Q Consensus 133 ~~~F~FD~VF~~~asQ~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G~~~~~GIi~~~~~~~~lf~~~~~~~ 212 (409)
+..|.||+||++.++|++||+.+++|++++++.||||||||||||||||||||.|..+++||||+.+.. +|+.+....
T Consensus 55 ~~~~~fdkvf~~~~~q~~v~e~~~~~l~~~~l~g~N~TvfayGqTgsgKtyt~~G~~~~~Gii~~~l~~--lf~~l~~~~ 132 (568)
T COG5059 55 EGTYAFDKVFGPSATQEDVYEETIKPLIDSLLLGYNCTVFAYGQTGSGKTYTMSGTEEEPGIIPLSLKE--LFSKLEDLS 132 (568)
T ss_pred ceEEEEeeccCCCCcHHHHHHHhhhhHHHHHHhcccceEEEEcccCCCceeEeecCccccchHHHHHHH--HHHHHHhcc
Confidence 567999999999999999999999999999999999999999999999999999999999999999999 999765443
Q ss_pred ---------eEEEEEeceeeEe----------------------------------------------------ecCccc
Q psy4062 213 ---------CTMRMYKTCLILR----------------------------------------------------RKPSIC 231 (409)
Q Consensus 213 ---------s~~eiy~~~~~~~----------------------------------------------------~~~ssr 231 (409)
||+|||++...|+ +..++|
T Consensus 133 ~~~~~~v~is~lEiYnEk~~DLl~~~~~~~~~~~~~~~~v~v~~l~~~~~~s~ee~l~~l~~~~~nr~~~~te~n~~ssR 212 (568)
T COG5059 133 MTKDFAVSISYLEIYNEKIYDLLSPNEESLNIREDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSR 212 (568)
T ss_pred cCcceeeEeehhHHHhhHHHhhccCccccccccccCCCceEeecceEEecCChHHHHHHHHHhhhhcccccchhcccccc
Confidence 8999997766654 234899
Q ss_pred ceeeEEEEEEeeccccceeEEeEEEEeecCCcccccccCCccchhhhhcccchhHHHHHHHHHHHhc--CCCCcccCCch
Q psy4062 232 EKMQLMVYVKMQDKATKQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLAD--GCRHVPYRDSK 309 (409)
Q Consensus 232 sh~i~~i~v~~~~~~~~~~~~skL~~VDLAGSEr~~~~~~~~~r~~E~~~IN~SL~aL~~vI~aL~~--~~~~iPyRdSk 309 (409)
+|++|++++.+.+........++|++|||||||++..++..+.|++|+..||+||.+||+||++|.. +..|||||+||
T Consensus 213 shsi~~i~~~~~~~~~~~~~~~~l~lvDLagSE~~~~~~~~~~r~~E~~~iN~sLl~Lg~vI~~L~~~~~~~~ipyResk 292 (568)
T COG5059 213 SHSIFQIELASKNKVSGTSETSKLSLVDLAGSERAARTGNRGTRLKEGASINKSLLTLGNVINALGDKKKSGHIPYRESK 292 (568)
T ss_pred ceEEEEEEEEEeccCccceecceEEEEeeccccccchhhcccchhhhhhhhHhhHHHHHHHHHHHhccccCCccchhhhH
Confidence 9999999999998877766678999999999999999999999999999999999999999999997 77999999999
Q ss_pred hhHhhhhccCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHHhcCcccceeec
Q psy4062 310 LTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKIKAKVSRTF 361 (409)
Q Consensus 310 LT~LLk~sLgGn~~t~~I~~isP~~~~~~eTl~TL~fa~rak~Ik~~~~~n~ 361 (409)
|||||+++|||+|+|.|||||+|...+++||.+||+||+||+.|++++..|.
T Consensus 293 LTRlLq~sLgG~~~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~~~ 344 (568)
T COG5059 293 LTRLLQDSLGGNCNTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNS 344 (568)
T ss_pred HHHHHHHhcCCCccEEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCcccccC
Confidence 9999999999999999999999999999999999999999999999999995
No 29
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=100.00 E-value=2.5e-48 Score=357.33 Aligned_cols=176 Identities=39% Similarity=0.578 Sum_probs=156.5
Q ss_pred hhccchHHHHHHHhcCcceEEEeeccCCCCceeeecCCCCCCchhhhhhhhhhHHHhhhhceeEEEEEeceeeEeecCcc
Q psy4062 151 VYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGNENHKGIMYLTMGIRNRVSALTRQMCTMRMYKTCLILRRKPSI 230 (409)
Q Consensus 151 Vf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G~~~~~GIi~~~~~~~~lf~~~~~~~s~~eiy~~~~~~~~~~ss 230 (409)
||+.++ |+|+.+++|+|+||||||||||||||||+|+++++||+|+++++ ++..+..-...=. ......+..++
T Consensus 8 vf~~~~-~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~~~~~Giip~~~~~--~~~ll~~g~~~R~---~~~t~~N~~SS 81 (186)
T cd01363 8 VFRDVG-PLLQSALDGYNVCIFAYGQTGSGKTYTMEGKREGAGIIPRTVTD--VIDLMDKGNANRT---TAATAMNEHSS 81 (186)
T ss_pred HHHHHH-HHHHHHhCCcceeEEEECCCCCcceEecCCCCCCCCcchHHHHH--HHHHHhhcccccc---ccccCCCCccC
Confidence 899998 99999999999999999999999999999999999999999997 5555443321100 11223466799
Q ss_pred cceeeEEEEEEeecccc---ceeEEeEEEEeecCCcccccccCCccchhhhhcccchhHHHHHHHHHHHhcCCCCcccCC
Q psy4062 231 CEKMQLMVYVKMQDKAT---KQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLADGCRHVPYRD 307 (409)
Q Consensus 231 rsh~i~~i~v~~~~~~~---~~~~~skL~~VDLAGSEr~~~~~~~~~r~~E~~~IN~SL~aL~~vI~aL~~~~~~iPyRd 307 (409)
|+|.+|++++.+.+... .....++|+||||||||+..+.+..+++++|+..||+||.+|++||.+|++++.|+||||
T Consensus 82 RsH~i~~i~v~~~~~~~~~~~~~~~s~l~lVDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~~~~~vpyr~ 161 (186)
T cd01363 82 RSHSVFRIHFGGKNALASATEQPKVGKINLVDLAGSERIDFSGAEGSRLTETANINKSLSTLGNVISALAERDSHVPYRE 161 (186)
T ss_pred cccEEEEEEEEEeecCCCCccceeeeeEEEEEccccccccccCCchhhHHHHHHHhhHHHHHHHHHHHHhcCCCCCCCcc
Confidence 99999999999877654 667889999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHhhhhccCCCccEEEEEEeCC
Q psy4062 308 SKLTRILKDSLGGNCKTVMIANIAP 332 (409)
Q Consensus 308 SkLT~LLk~sLgGn~~t~~I~~isP 332 (409)
||||+||||+|||||+|+||+||||
T Consensus 162 SkLT~lL~~~L~g~~~t~~i~~vsP 186 (186)
T cd01363 162 SKLTRLLQDSLGGNSRTLMVACISP 186 (186)
T ss_pred cHHHHHHHHhcCCCCeEEEEEEeCc
Confidence 9999999999999999999999998
No 30
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=97.17 E-value=4.7e-06 Score=89.18 Aligned_cols=155 Identities=23% Similarity=0.243 Sum_probs=99.0
Q ss_pred CceeEeeceEeCCCCCchhhhccchHHHHHHHhcCcceEEEeeccCCCCceeeecCCCCCCchhhhhhhh----------
Q psy4062 132 KEMEFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGNENHKGIMYLTMGI---------- 201 (409)
Q Consensus 132 ~~~~F~FD~VF~~~asQ~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G~~~~~GIi~~~~~~---------- 201 (409)
....|.||.+|.+...+..++... ..+++..++| +++|+++++++++||.-. ..++..-.+..
T Consensus 351 ~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~ 423 (568)
T COG5059 351 EIEEIKFDLSEDRSEIEILVFREQ-SQLSQSSLSG----IFAYMQSLKKETETLKSR--IDLIMKSIISGTFERKKLLKE 423 (568)
T ss_pred HHHHHHhhhhhhhhhhhhHHHHHH-Hhhhhhhhhh----HHHHHhhhhhhhhcccch--hhhhhhhhhhhhhhhhhhhhh
Confidence 345689999999999999998865 7788888888 999999999999999521 11111111000
Q ss_pred -------hhHHHhhh------------hce---------------eEEEEE-----------------eceeeEeecCcc
Q psy4062 202 -------RNRVSALT------------RQM---------------CTMRMY-----------------KTCLILRRKPSI 230 (409)
Q Consensus 202 -------~~lf~~~~------------~~~---------------s~~eiy-----------------~~~~~~~~~~ss 230 (409)
...|..+. ... +.+..- .......+..+.
T Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~ 503 (568)
T COG5059 424 EGWKYKSTLQFLRIEIDRLLLLREEELSKKKTKIHKLNKLRHDLSSLLSSIPEETSDRVESEKASKLRSSASTKLNLRSS 503 (568)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhhhcchhhhhhhhhhhhccchhhcccchhhhhc
Confidence 00000000 000 000000 000001122356
Q ss_pred cceeeEEEEEEeeccccceeEEeEEEEeecCCcccccccCCccchhhhhcccchhHHHHHHHHHHHh
Q psy4062 231 CEKMQLMVYVKMQDKATKQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLA 297 (409)
Q Consensus 231 rsh~i~~i~v~~~~~~~~~~~~skL~~VDLAGSEr~~~~~~~~~r~~E~~~IN~SL~aL~~vI~aL~ 297 (409)
++|..|............... ++.|||||+||. -+..-+.++++..++|++|..++.+|.++.
T Consensus 504 ~~~~~~~~~~~~~~~~~~~~~---~n~~~~~~~e~~-~s~~~~~~l~~~~~~~k~l~~~~d~~~~~~ 566 (568)
T COG5059 504 RSHSKFRDHLNGSNSSTKELS---LNQVDLAGSERK-VSQSVGELLRETQSLNKSLSSLGDVIHALG 566 (568)
T ss_pred ccchhhhhcccchhhhhHHHH---hhhhhccccccc-hhhhhHHHHHhhHhhhhccccchhhhhhcc
Confidence 677777666554443333222 799999999999 888999999999999999999999998764
No 31
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=93.62 E-value=0.027 Score=53.10 Aligned_cols=49 Identities=39% Similarity=0.619 Sum_probs=30.1
Q ss_pred eEeeceEeCCCCCchhhhccchHHHHHHHhcCcceEEEeeccCCCCceeeec
Q psy4062 135 EFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 135 ~F~FD~VF~~~asQ~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~ 186 (409)
.|+||.-+- ..+++..|.. +..+.+.--..+|. ++-||++|+||||-|.
T Consensus 4 ~~tFdnfv~-g~~N~~a~~~-~~~ia~~~~~~~~~-l~l~G~~G~GKTHLL~ 52 (219)
T PF00308_consen 4 KYTFDNFVV-GESNELAYAA-AKAIAENPGERYNP-LFLYGPSGLGKTHLLQ 52 (219)
T ss_dssp T-SCCCS---TTTTHHHHHH-HHHHHHSTTTSSSE-EEEEESTTSSHHHHHH
T ss_pred CCccccCCc-CCcHHHHHHH-HHHHHhcCCCCCCc-eEEECCCCCCHHHHHH
Confidence 489998764 3456666653 34444442223444 7889999999999875
No 32
>PRK06893 DNA replication initiation factor; Validated
Probab=93.60 E-value=0.045 Score=51.84 Aligned_cols=46 Identities=13% Similarity=0.305 Sum_probs=31.7
Q ss_pred eEeeceEeCCCCCchhhhccchHHHHHHHhcCcceEEEeeccCCCCceeeec
Q psy4062 135 EFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 135 ~F~FD~VF~~~asQ~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~ 186 (409)
.++||..+... +.. .+.-+.+.+-+++|..++-||++|+||||-+.
T Consensus 12 ~~~fd~f~~~~-~~~-----~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ 57 (229)
T PRK06893 12 DETLDNFYADN-NLL-----LLDSLRKNFIDLQQPFFYIWGGKSSGKSHLLK 57 (229)
T ss_pred cccccccccCC-hHH-----HHHHHHHHhhccCCCeEEEECCCCCCHHHHHH
Confidence 47899988643 221 12223334445778889999999999999875
No 33
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.50 E-value=0.034 Score=54.73 Aligned_cols=31 Identities=32% Similarity=0.461 Sum_probs=28.4
Q ss_pred hHHHHHHHhcCcceEEEeeccCCCCceeeec
Q psy4062 156 TKDIIASLLEGYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 156 ~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~ 186 (409)
+.|++..+.+--++.|+.-|+||||||.||-
T Consensus 113 lP~i~~~~~~~~~GLILVTGpTGSGKSTTlA 143 (353)
T COG2805 113 LPPIVRELAESPRGLILVTGPTGSGKSTTLA 143 (353)
T ss_pred CCHHHHHHHhCCCceEEEeCCCCCcHHHHHH
Confidence 4678889999999999999999999999984
No 34
>PRK06620 hypothetical protein; Validated
Probab=92.31 E-value=0.065 Score=50.42 Aligned_cols=50 Identities=24% Similarity=0.304 Sum_probs=33.3
Q ss_pred eeEeeceEeCCCCCchhhhccchHHHHHHHhcCcc---eEEEeeccCCCCceeeecC
Q psy4062 134 MEFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYN---CSVFVYGATGAGKTHTMLG 187 (409)
Q Consensus 134 ~~F~FD~VF~~~asQ~eVf~~~~~plV~~vl~G~N---~tI~aYGqTGSGKTyTm~G 187 (409)
..|+||..+- ..+++..|..+ ..+.+. + |+| -.++-||++||||||.+..
T Consensus 11 ~~~tfd~Fvv-g~~N~~a~~~~-~~~~~~-~-~~~~~~~~l~l~Gp~G~GKThLl~a 63 (214)
T PRK06620 11 SKYHPDEFIV-SSSNDQAYNII-KNWQCG-F-GVNPYKFTLLIKGPSSSGKTYLTKI 63 (214)
T ss_pred CCCCchhhEe-cccHHHHHHHH-HHHHHc-c-ccCCCcceEEEECCCCCCHHHHHHH
Confidence 3588998775 34456677644 333321 1 343 3589999999999999864
No 35
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.80 E-value=0.097 Score=54.89 Aligned_cols=32 Identities=31% Similarity=0.413 Sum_probs=28.0
Q ss_pred hHHHHHHHhcCcceEEEeeccCCCCceeeecC
Q psy4062 156 TKDIIASLLEGYNCSVFVYGATGAGKTHTMLG 187 (409)
Q Consensus 156 ~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G 187 (409)
-...+.++++.-++-|+.-|+||||||.||+.
T Consensus 246 ~~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~ 277 (500)
T COG2804 246 QLARLLRLLNRPQGLILVTGPTGSGKTTTLYA 277 (500)
T ss_pred HHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHH
Confidence 35567788899999999999999999999974
No 36
>PRK12377 putative replication protein; Provisional
Probab=90.81 E-value=0.1 Score=50.36 Aligned_cols=50 Identities=20% Similarity=0.314 Sum_probs=35.5
Q ss_pred EeeceEeCCCCCchhhhccchHHHHHHHhcCcceEEEeeccCCCCceeeecC
Q psy4062 136 FLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLG 187 (409)
Q Consensus 136 F~FD~VF~~~asQ~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G 187 (409)
.+||........|..++.. +..+++.+..+. ..++-||++|+||||.+.+
T Consensus 71 ~tFdnf~~~~~~~~~a~~~-a~~~a~~~~~~~-~~l~l~G~~GtGKThLa~A 120 (248)
T PRK12377 71 CSFANYQVQNDGQRYALSQ-AKSIADELMTGC-TNFVFSGKPGTGKNHLAAA 120 (248)
T ss_pred CCcCCcccCChhHHHHHHH-HHHHHHHHHhcC-CeEEEECCCCCCHHHHHHH
Confidence 3577655445566667763 466777776654 4688999999999999863
No 37
>PRK05642 DNA replication initiation factor; Validated
Probab=90.48 E-value=0.16 Score=48.24 Aligned_cols=45 Identities=22% Similarity=0.542 Sum_probs=28.4
Q ss_pred eEeeceEeCCCCCchhhhccchHHHHHHHhc---Cc-ceEEEeeccCCCCceeeec
Q psy4062 135 EFLFDRVYGPSESNQDVYDGSTKDIIASLLE---GY-NCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 135 ~F~FD~VF~~~asQ~eVf~~~~~plV~~vl~---G~-N~tI~aYGqTGSGKTyTm~ 186 (409)
.|+||.-+.. . +.. +...++...+ ++ ...++-||.+|+||||-+.
T Consensus 15 ~~tfdnF~~~-~-~~~-----a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~ 63 (234)
T PRK05642 15 DATFANYYPG-A-NAA-----ALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQ 63 (234)
T ss_pred cccccccCcC-C-hHH-----HHHHHHHHhhccccCCCCeEEEECCCCCCHHHHHH
Confidence 5889887732 2 222 3334444333 22 2468899999999999875
No 38
>PRK09087 hypothetical protein; Validated
Probab=90.29 E-value=0.16 Score=48.14 Aligned_cols=46 Identities=24% Similarity=0.260 Sum_probs=30.8
Q ss_pred eEeeceEeCCCCCchhhhccchHHHHHHHhcCcceEEEeeccCCCCceeeec
Q psy4062 135 EFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 135 ~F~FD~VF~~~asQ~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~ 186 (409)
.|+||..+.. .++..+|. +++....-.+..++-||++||||||-+.
T Consensus 17 ~~~~~~Fi~~-~~N~~a~~-----~l~~~~~~~~~~l~l~G~~GsGKThLl~ 62 (226)
T PRK09087 17 AYGRDDLLVT-ESNRAAVS-----LVDHWPNWPSPVVVLAGPVGSGKTHLAS 62 (226)
T ss_pred CCChhceeec-CchHHHHH-----HHHhcccCCCCeEEEECCCCCCHHHHHH
Confidence 5789888753 33445666 3333222235568999999999999986
No 39
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=90.02 E-value=0.23 Score=52.35 Aligned_cols=48 Identities=23% Similarity=0.497 Sum_probs=35.1
Q ss_pred eEeeceEeCCCCCchhhhccchHHHHHHHhcCcceEEEeeccCCCCceeeecC
Q psy4062 135 EFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLG 187 (409)
Q Consensus 135 ~F~FD~VF~~~asQ~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G 187 (409)
.|..-.-|.|.-+|-+ .+..||+.+-+|.-.- .-.|.|||||||||--
T Consensus 4 ~F~l~s~f~PaGDQP~----AI~~Lv~gi~~g~~~Q-tLLGvTGSGKTfT~An 51 (663)
T COG0556 4 PFKLHSPFKPAGDQPE----AIAELVEGIENGLKHQ-TLLGVTGSGKTFTMAN 51 (663)
T ss_pred ceEeccCCCCCCCcHH----HHHHHHHHHhcCceee-EEeeeccCCchhHHHH
Confidence 4666677888888864 4466777777776543 3469999999999953
No 40
>PRK06526 transposase; Provisional
Probab=89.52 E-value=0.11 Score=50.35 Aligned_cols=17 Identities=47% Similarity=0.853 Sum_probs=15.6
Q ss_pred EEeeccCCCCceeeecC
Q psy4062 171 VFVYGATGAGKTHTMLG 187 (409)
Q Consensus 171 I~aYGqTGSGKTyTm~G 187 (409)
|+.||++|+||||.+.+
T Consensus 101 lll~Gp~GtGKThLa~a 117 (254)
T PRK06526 101 VVFLGPPGTGKTHLAIG 117 (254)
T ss_pred EEEEeCCCCchHHHHHH
Confidence 79999999999999864
No 41
>PRK08116 hypothetical protein; Validated
Probab=89.25 E-value=0.15 Score=49.64 Aligned_cols=51 Identities=18% Similarity=0.333 Sum_probs=35.2
Q ss_pred eEeeceEeCCCCCchhhhccchHHHHHHHhc--CcceEEEeeccCCCCceeeecC
Q psy4062 135 EFLFDRVYGPSESNQDVYDGSTKDIIASLLE--GYNCSVFVYGATGAGKTHTMLG 187 (409)
Q Consensus 135 ~F~FD~VF~~~asQ~eVf~~~~~plV~~vl~--G~N~tI~aYGqTGSGKTyTm~G 187 (409)
.++||... .+..+...|.. +...++.+.+ ..+..++-||.+|+||||.+..
T Consensus 81 ~~tFdnf~-~~~~~~~a~~~-a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~a 133 (268)
T PRK08116 81 NSTFENFL-FDKGSEKAYKI-ARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAAC 133 (268)
T ss_pred hcchhccc-CChHHHHHHHH-HHHHHHHHHhhccCCceEEEECCCCCCHHHHHHH
Confidence 46777644 34556666653 4666676543 3455699999999999999853
No 42
>PRK08084 DNA replication initiation factor; Provisional
Probab=89.18 E-value=0.18 Score=47.93 Aligned_cols=46 Identities=15% Similarity=0.395 Sum_probs=29.8
Q ss_pred eEeeceEeCCCCCchhhhccchHHHHHHHhcCcceEEEeeccCCCCceeeec
Q psy4062 135 EFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 135 ~F~FD~VF~~~asQ~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~ 186 (409)
.|+||.-+.. .+...+..+ ..+.. ......++-||++|+||||.+.
T Consensus 18 ~~~fd~f~~~--~n~~a~~~l-~~~~~---~~~~~~l~l~Gp~G~GKThLl~ 63 (235)
T PRK08084 18 DETFASFYPG--DNDSLLAAL-QNALR---QEHSGYIYLWSREGAGRSHLLH 63 (235)
T ss_pred cCCccccccC--ccHHHHHHH-HHHHh---CCCCCeEEEECCCCCCHHHHHH
Confidence 4778866643 556666432 32221 2223478999999999999985
No 43
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=89.18 E-value=0.18 Score=44.63 Aligned_cols=31 Identities=35% Similarity=0.389 Sum_probs=21.1
Q ss_pred HHHHHHHhcC-cceEEEeeccCCCCceeeecC
Q psy4062 157 KDIIASLLEG-YNCSVFVYGATGAGKTHTMLG 187 (409)
Q Consensus 157 ~plV~~vl~G-~N~tI~aYGqTGSGKTyTm~G 187 (409)
..+++.+-.+ ...-++..++||||||++|..
T Consensus 13 ~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~ 44 (184)
T PF04851_consen 13 ARIINSLENKKEERRVLLNAPTGSGKTIIALA 44 (184)
T ss_dssp HHHHHHHHTTSGCSEEEEEESTTSSHHHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEECCCCCcChhhhh
Confidence 3344444444 355667778999999999973
No 44
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=88.64 E-value=0.15 Score=55.09 Aligned_cols=51 Identities=27% Similarity=0.452 Sum_probs=34.4
Q ss_pred eeEeeceEeCCCCCchhhhccchHHHHHHHhcCcceEEEeeccCCCCceeeecC
Q psy4062 134 MEFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLG 187 (409)
Q Consensus 134 ~~F~FD~VF~~~asQ~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G 187 (409)
..|+||..+-. .+++..|. .+..+++..-.++|. ||-||.+|+||||-+.+
T Consensus 283 ~~~TFDnFvvG-~sN~~A~a-aa~avae~~~~~~Np-L~LyG~sGsGKTHLL~A 333 (617)
T PRK14086 283 PKYTFDTFVIG-ASNRFAHA-AAVAVAEAPAKAYNP-LFIYGESGLGKTHLLHA 333 (617)
T ss_pred CCCCHhhhcCC-CccHHHHH-HHHHHHhCccccCCc-EEEECCCCCCHHHHHHH
Confidence 46899886532 23444553 334455543446776 89999999999999864
No 45
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=88.48 E-value=0.17 Score=52.87 Aligned_cols=50 Identities=26% Similarity=0.521 Sum_probs=33.4
Q ss_pred eeEeeceEeCCCCCchhhhccchHHHHHHHhcCcceEEEeeccCCCCceeeecC
Q psy4062 134 MEFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLG 187 (409)
Q Consensus 134 ~~F~FD~VF~~~asQ~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G 187 (409)
..|+||.-.- ..+++..|..+ ..+.++ -..+|. ++-||++|+||||-|..
T Consensus 100 ~~~tFdnFv~-g~~n~~a~~~~-~~~~~~-~~~~n~-l~lyG~~G~GKTHLl~a 149 (440)
T PRK14088 100 PDYTFENFVV-GPGNSFAYHAA-LEVAKN-PGRYNP-LFIYGGVGLGKTHLLQS 149 (440)
T ss_pred CCCccccccc-CCchHHHHHHH-HHHHhC-cCCCCe-EEEEcCCCCcHHHHHHH
Confidence 4689998774 34555566543 333332 112665 99999999999999864
No 46
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=88.14 E-value=0.27 Score=41.00 Aligned_cols=29 Identities=24% Similarity=0.356 Sum_probs=19.8
Q ss_pred HHHHHHHhcCcceEEEeeccCCCCceeee
Q psy4062 157 KDIIASLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 157 ~plV~~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
..+...+.......++.+|++|+|||+.+
T Consensus 8 ~~i~~~~~~~~~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 8 EALREALELPPPKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred HHHHHHHhCCCCCeEEEECCCCCCHHHHH
Confidence 33444444434456889999999999765
No 47
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=88.00 E-value=0.2 Score=51.46 Aligned_cols=51 Identities=27% Similarity=0.475 Sum_probs=31.3
Q ss_pred eeEeeceEeCCCCCchhhhccchHHHHHHHhcCcceEEEeeccCCCCceeeecC
Q psy4062 134 MEFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLG 187 (409)
Q Consensus 134 ~~F~FD~VF~~~asQ~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G 187 (409)
..|+||...- ...+...|.. +..+.+.--..+| .++-||++|+||||.+..
T Consensus 105 ~~~tfd~fi~-g~~n~~a~~~-~~~~~~~~~~~~n-~l~l~G~~G~GKThL~~a 155 (405)
T TIGR00362 105 PKYTFDNFVV-GKSNRLAHAA-ALAVAENPGKAYN-PLFIYGGVGLGKTHLLHA 155 (405)
T ss_pred CCCccccccc-CCcHHHHHHH-HHHHHhCcCccCC-eEEEECCCCCcHHHHHHH
Confidence 4688988442 3445555543 3444433111234 478899999999999854
No 48
>PRK07952 DNA replication protein DnaC; Validated
Probab=87.96 E-value=0.3 Score=46.94 Aligned_cols=51 Identities=16% Similarity=0.264 Sum_probs=32.6
Q ss_pred eEeeceEeCCCCCchhhhccchHHHHHHHhcCcceEEEeeccCCCCceeeecC
Q psy4062 135 EFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLG 187 (409)
Q Consensus 135 ~F~FD~VF~~~asQ~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G 187 (409)
..+||...-....|..++..+ ...++....|. ..++-||.+|+||||.+.+
T Consensus 68 ~~tFdnf~~~~~~q~~al~~a-~~~~~~~~~~~-~~~~l~G~~GtGKThLa~a 118 (244)
T PRK07952 68 NCSFENYRVECEGQMNALSKA-RQYVEEFDGNI-ASFIFSGKPGTGKNHLAAA 118 (244)
T ss_pred CCccccccCCCchHHHHHHHH-HHHHHhhccCC-ceEEEECCCCCCHHHHHHH
Confidence 356766543344565566543 44555554443 3689999999999999853
No 49
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=87.58 E-value=0.22 Score=51.95 Aligned_cols=51 Identities=27% Similarity=0.475 Sum_probs=31.9
Q ss_pred eeEeeceEeCCCCCchhhhccchHHHHHHHhcCcceEEEeeccCCCCceeeecC
Q psy4062 134 MEFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLG 187 (409)
Q Consensus 134 ~~F~FD~VF~~~asQ~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G 187 (409)
..|+||.... ...+...|.. +..+.++--..+| .++-||++|+||||.+..
T Consensus 117 ~~~tfd~fv~-g~~n~~a~~~-~~~~~~~~~~~~~-~l~l~G~~G~GKThL~~a 167 (450)
T PRK00149 117 PKYTFDNFVV-GKSNRLAHAA-ALAVAENPGKAYN-PLFIYGGVGLGKTHLLHA 167 (450)
T ss_pred CCCccccccc-CCCcHHHHHH-HHHHHhCcCccCC-eEEEECCCCCCHHHHHHH
Confidence 4688988442 2355555553 2444443222345 478899999999999854
No 50
>PRK08727 hypothetical protein; Validated
Probab=87.51 E-value=0.36 Score=45.86 Aligned_cols=18 Identities=39% Similarity=0.654 Sum_probs=16.0
Q ss_pred eEEEeeccCCCCceeeec
Q psy4062 169 CSVFVYGATGAGKTHTML 186 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm~ 186 (409)
-.|+-||++|+||||-+.
T Consensus 42 ~~l~l~G~~G~GKThL~~ 59 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLAL 59 (233)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 459999999999999875
No 51
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=87.22 E-value=0.37 Score=45.17 Aligned_cols=48 Identities=19% Similarity=0.382 Sum_probs=29.6
Q ss_pred eeEeeceEeCCCCCchhhhccchHHHHHHHhcCcceEEEeeccCCCCceeeec
Q psy4062 134 MEFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 134 ~~F~FD~VF~~~asQ~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~ 186 (409)
..|+||..+.. . .+++.. .+..++.. ...+..++-||++|+||||-+.
T Consensus 13 ~~~~~d~f~~~-~-~~~~~~-~l~~~~~~--~~~~~~~~l~G~~G~GKT~La~ 60 (227)
T PRK08903 13 PPPTFDNFVAG-E-NAELVA-RLRELAAG--PVADRFFYLWGEAGSGRSHLLQ 60 (227)
T ss_pred ChhhhcccccC-C-cHHHHH-HHHHHHhc--cCCCCeEEEECCCCCCHHHHHH
Confidence 35889988732 2 233332 23333331 2345678999999999999874
No 52
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=87.14 E-value=0.33 Score=48.72 Aligned_cols=28 Identities=36% Similarity=0.640 Sum_probs=20.9
Q ss_pred HHHHHhc-CcceEEEeeccCCCCceeeec
Q psy4062 159 IIASLLE-GYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 159 lV~~vl~-G~N~tI~aYGqTGSGKTyTm~ 186 (409)
.+..++. +....++-||++|+|||+++.
T Consensus 30 ~l~~~~~~~~~~~i~I~G~~GtGKT~l~~ 58 (365)
T TIGR02928 30 ALRPILRGSRPSNVFIYGKTGTGKTAVTK 58 (365)
T ss_pred HHHHHHcCCCCCcEEEECCCCCCHHHHHH
Confidence 3444444 455689999999999999883
No 53
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=87.07 E-value=0.26 Score=51.63 Aligned_cols=50 Identities=28% Similarity=0.478 Sum_probs=31.9
Q ss_pred eEeeceEeCCCCCchhhhccchHHHHHHHhcCcceEEEeeccCCCCceeeecC
Q psy4062 135 EFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLG 187 (409)
Q Consensus 135 ~F~FD~VF~~~asQ~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G 187 (409)
.|+||...-. .+++..|. .+..+.+.--..+| .+|-||.+|+||||.|..
T Consensus 111 ~~tFdnFv~g-~~n~~A~~-aa~~~a~~~~~~~n-pl~i~G~~G~GKTHLl~A 160 (450)
T PRK14087 111 ENTFENFVIG-SSNEQAFI-AVQTVSKNPGISYN-PLFIYGESGMGKTHLLKA 160 (450)
T ss_pred ccchhcccCC-CcHHHHHH-HHHHHHhCcCcccC-ceEEECCCCCcHHHHHHH
Confidence 4899986643 34555664 33444332111244 489999999999999964
No 54
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=86.55 E-value=0.38 Score=48.86 Aligned_cols=28 Identities=32% Similarity=0.555 Sum_probs=20.5
Q ss_pred HHHHHhc-CcceEEEeeccCCCCceeeec
Q psy4062 159 IIASLLE-GYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 159 lV~~vl~-G~N~tI~aYGqTGSGKTyTm~ 186 (409)
.+...+. +....++-||++|+|||+++-
T Consensus 45 ~l~~~~~~~~~~~~lI~G~~GtGKT~l~~ 73 (394)
T PRK00411 45 ALRPALRGSRPLNVLIYGPPGTGKTTTVK 73 (394)
T ss_pred HHHHHhCCCCCCeEEEECCCCCCHHHHHH
Confidence 3344443 445678999999999999984
No 55
>PRK08181 transposase; Validated
Probab=86.20 E-value=0.45 Score=46.43 Aligned_cols=21 Identities=33% Similarity=0.775 Sum_probs=17.6
Q ss_pred cCcceEEEeeccCCCCceeeecC
Q psy4062 165 EGYNCSVFVYGATGAGKTHTMLG 187 (409)
Q Consensus 165 ~G~N~tI~aYGqTGSGKTyTm~G 187 (409)
.|.| |+-||++|+||||-+.+
T Consensus 105 ~~~n--lll~Gp~GtGKTHLa~A 125 (269)
T PRK08181 105 KGAN--LLLFGPPGGGKSHLAAA 125 (269)
T ss_pred cCce--EEEEecCCCcHHHHHHH
Confidence 4554 89999999999999865
No 56
>PRK10436 hypothetical protein; Provisional
Probab=85.99 E-value=0.34 Score=50.91 Aligned_cols=28 Identities=32% Similarity=0.418 Sum_probs=24.0
Q ss_pred HHHHHhcCcceEEEeeccCCCCceeeec
Q psy4062 159 IIASLLEGYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 159 lV~~vl~G~N~tI~aYGqTGSGKTyTm~ 186 (409)
.+..++..-++.|+..|+||||||.||.
T Consensus 209 ~l~~~~~~~~GliLvtGpTGSGKTTtL~ 236 (462)
T PRK10436 209 QFRQALQQPQGLILVTGPTGSGKTVTLY 236 (462)
T ss_pred HHHHHHHhcCCeEEEECCCCCChHHHHH
Confidence 4556677788999999999999999996
No 57
>PF13245 AAA_19: Part of AAA domain
Probab=85.87 E-value=0.35 Score=37.86 Aligned_cols=26 Identities=31% Similarity=0.373 Sum_probs=18.1
Q ss_pred HHHHhcCcceEEEeeccCCCCceeeec
Q psy4062 160 IASLLEGYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 160 V~~vl~G~N~tI~aYGqTGSGKTyTm~ 186 (409)
|..++. -+..++.-|+.|||||+|+.
T Consensus 3 v~~al~-~~~~~vv~g~pGtGKT~~~~ 28 (76)
T PF13245_consen 3 VRRALA-GSPLFVVQGPPGTGKTTTLA 28 (76)
T ss_pred HHHHHh-hCCeEEEECCCCCCHHHHHH
Confidence 444555 33445558999999999984
No 58
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=85.51 E-value=0.28 Score=40.48 Aligned_cols=17 Identities=41% Similarity=0.509 Sum_probs=15.0
Q ss_pred EEeeccCCCCceeeecC
Q psy4062 171 VFVYGATGAGKTHTMLG 187 (409)
Q Consensus 171 I~aYGqTGSGKTyTm~G 187 (409)
++.+|+||+|||+++..
T Consensus 3 ~~i~~~~G~GKT~~~~~ 19 (144)
T cd00046 3 VLLAAPTGSGKTLAALL 19 (144)
T ss_pred EEEECCCCCchhHHHHH
Confidence 57899999999999864
No 59
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=85.03 E-value=0.41 Score=51.63 Aligned_cols=29 Identities=28% Similarity=0.408 Sum_probs=24.6
Q ss_pred HHHHHhcCcceEEEeeccCCCCceeeecC
Q psy4062 159 IIASLLEGYNCSVFVYGATGAGKTHTMLG 187 (409)
Q Consensus 159 lV~~vl~G~N~tI~aYGqTGSGKTyTm~G 187 (409)
.+..++..-++.|+..|+||||||.||..
T Consensus 307 ~l~~~~~~~~Glilv~G~tGSGKTTtl~a 335 (564)
T TIGR02538 307 LFLEAIHKPQGMVLVTGPTGSGKTVSLYT 335 (564)
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHHHH
Confidence 45677777889999999999999999853
No 60
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=84.99 E-value=0.46 Score=50.27 Aligned_cols=28 Identities=32% Similarity=0.476 Sum_probs=23.8
Q ss_pred HHHHHhcCcceEEEeeccCCCCceeeec
Q psy4062 159 IIASLLEGYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 159 lV~~vl~G~N~tI~aYGqTGSGKTyTm~ 186 (409)
.+..++..-++.|+..|+||||||.||.
T Consensus 233 ~l~~~~~~~~GlilitGptGSGKTTtL~ 260 (486)
T TIGR02533 233 RFERLIRRPHGIILVTGPTGSGKTTTLY 260 (486)
T ss_pred HHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 4556777778889999999999999996
No 61
>PRK08939 primosomal protein DnaI; Reviewed
Probab=84.89 E-value=0.34 Score=48.19 Aligned_cols=51 Identities=16% Similarity=0.244 Sum_probs=32.3
Q ss_pred EeeceEeCCCCCchhhhccchHHHHHHHhcC-cceEEEeeccCCCCceeeecC
Q psy4062 136 FLFDRVYGPSESNQDVYDGSTKDIIASLLEG-YNCSVFVYGATGAGKTHTMLG 187 (409)
Q Consensus 136 F~FD~VF~~~asQ~eVf~~~~~plV~~vl~G-~N~tI~aYGqTGSGKTyTm~G 187 (409)
.+||.+-.....+..++.. +...++....| ..-.++-||++|+||||-+.+
T Consensus 124 atf~~~~~~~~~~~~~~~~-~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~A 175 (306)
T PRK08939 124 ASLADIDLDDRDRLDALMA-ALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAA 175 (306)
T ss_pred CcHHHhcCCChHHHHHHHH-HHHHHHHhhccCCCCeEEEECCCCCCHHHHHHH
Confidence 3455443233355666663 35566655543 234699999999999999864
No 62
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=84.41 E-value=0.5 Score=48.16 Aligned_cols=26 Identities=42% Similarity=0.769 Sum_probs=19.5
Q ss_pred HHHHhcCc-ceEEEeeccCCCCceeee
Q psy4062 160 IASLLEGY-NCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 160 V~~vl~G~-N~tI~aYGqTGSGKTyTm 185 (409)
+..++.|. ...++.||.||+|||.|+
T Consensus 33 l~~~~~~~~p~n~~iyG~~GTGKT~~~ 59 (366)
T COG1474 33 LAPALRGERPSNIIIYGPTGTGKTATV 59 (366)
T ss_pred HHHHhcCCCCccEEEECCCCCCHhHHH
Confidence 44455444 344999999999999987
No 63
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=84.35 E-value=0.52 Score=41.29 Aligned_cols=26 Identities=35% Similarity=0.636 Sum_probs=20.6
Q ss_pred HHHHHhcCcceEEEeeccCCCCceeeec
Q psy4062 159 IIASLLEGYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 159 lV~~vl~G~N~tI~aYGqTGSGKTyTm~ 186 (409)
+++.+.+|.| ++..|+||||||....
T Consensus 7 ~~~~i~~~~~--~li~aptGsGKT~~~~ 32 (169)
T PF00270_consen 7 AIEAIISGKN--VLISAPTGSGKTLAYI 32 (169)
T ss_dssp HHHHHHTTSE--EEEECSTTSSHHHHHH
T ss_pred HHHHHHcCCC--EEEECCCCCccHHHHH
Confidence 4555667776 7889999999999875
No 64
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=84.23 E-value=0.35 Score=46.61 Aligned_cols=29 Identities=31% Similarity=0.510 Sum_probs=20.7
Q ss_pred HHHHHHhcCc---ceEEEeeccCCCCceeeec
Q psy4062 158 DIIASLLEGY---NCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 158 plV~~vl~G~---N~tI~aYGqTGSGKTyTm~ 186 (409)
+.+..++... .+.|+..|.||||||.+|.
T Consensus 114 ~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~ 145 (270)
T PF00437_consen 114 EEIAEFLRSAVRGRGNILISGPTGSGKTTLLN 145 (270)
T ss_dssp HHHHHHHHHCHHTTEEEEEEESTTSSHHHHHH
T ss_pred HHHHHHHhhccccceEEEEECCCccccchHHH
Confidence 3444444433 5678888999999999983
No 65
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=84.03 E-value=0.52 Score=47.51 Aligned_cols=29 Identities=31% Similarity=0.485 Sum_probs=22.6
Q ss_pred HHHHHHhcCcceEEEeeccCCCCceeeec
Q psy4062 158 DIIASLLEGYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 158 plV~~vl~G~N~tI~aYGqTGSGKTyTm~ 186 (409)
+.+..++.--.+.|+..|+||||||.||.
T Consensus 112 ~~l~~~~~~~~g~ili~G~tGSGKTT~l~ 140 (343)
T TIGR01420 112 PVLRELAERPRGLILVTGPTGSGKSTTLA 140 (343)
T ss_pred HHHHHHHhhcCcEEEEECCCCCCHHHHHH
Confidence 45555555445789999999999999995
No 66
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=83.68 E-value=0.57 Score=47.89 Aligned_cols=28 Identities=32% Similarity=0.444 Sum_probs=20.9
Q ss_pred HHHHHHhcCcceEEEeeccCCCCceeeec
Q psy4062 158 DIIASLLEGYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 158 plV~~vl~G~N~tI~aYGqTGSGKTyTm~ 186 (409)
++++.++. .++.|+..|+||||||.||.
T Consensus 140 ~~~~~l~~-~~GlilI~G~TGSGKTT~l~ 167 (372)
T TIGR02525 140 DLFNSLLP-AAGLGLICGETGSGKSTLAA 167 (372)
T ss_pred HHHHHHHh-cCCEEEEECCCCCCHHHHHH
Confidence 34444443 45678899999999999984
No 67
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=83.63 E-value=0.37 Score=45.20 Aligned_cols=17 Identities=35% Similarity=0.798 Sum_probs=14.0
Q ss_pred EEEeeccCCCCceeeec
Q psy4062 170 SVFVYGATGAGKTHTML 186 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm~ 186 (409)
-+...|.||||||+|+.
T Consensus 25 H~~I~G~TGsGKS~~~~ 41 (229)
T PF01935_consen 25 HIAIFGTTGSGKSNTVK 41 (229)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 34678999999999983
No 68
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=82.92 E-value=0.36 Score=40.55 Aligned_cols=18 Identities=28% Similarity=0.514 Sum_probs=13.1
Q ss_pred ceEEEeeccCCCCceeee
Q psy4062 168 NCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 168 N~tI~aYGqTGSGKTyTm 185 (409)
..+++.+|.+|+|||.++
T Consensus 4 ~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ---EEEEE-TTSSHHHHH
T ss_pred CcccEEEcCCCCCHHHHH
Confidence 357899999999999886
No 69
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=82.56 E-value=0.81 Score=41.72 Aligned_cols=20 Identities=35% Similarity=0.725 Sum_probs=15.9
Q ss_pred ceEEEeeccCCCCceeeecC
Q psy4062 168 NCSVFVYGATGAGKTHTMLG 187 (409)
Q Consensus 168 N~tI~aYGqTGSGKTyTm~G 187 (409)
.-.++-+|++|+||||...+
T Consensus 47 ~~~l~l~G~~G~GKThLa~a 66 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVA 66 (178)
T ss_dssp --EEEEEESTTSSHHHHHHH
T ss_pred CeEEEEEhhHhHHHHHHHHH
Confidence 34589999999999998754
No 70
>PRK06835 DNA replication protein DnaC; Validated
Probab=82.48 E-value=0.8 Score=46.03 Aligned_cols=31 Identities=29% Similarity=0.422 Sum_probs=23.6
Q ss_pred hHHHHHHHhcCcceEEEeeccCCCCceeeecC
Q psy4062 156 TKDIIASLLEGYNCSVFVYGATGAGKTHTMLG 187 (409)
Q Consensus 156 ~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G 187 (409)
+...++.+-.+. -.|+-||++|+||||.+.+
T Consensus 172 ~~~f~~~f~~~~-~~Lll~G~~GtGKThLa~a 202 (329)
T PRK06835 172 CKNFIENFDKNN-ENLLFYGNTGTGKTFLSNC 202 (329)
T ss_pred HHHHHHHHhccC-CcEEEECCCCCcHHHHHHH
Confidence 355677666554 5699999999999998754
No 71
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=82.39 E-value=0.72 Score=44.56 Aligned_cols=50 Identities=16% Similarity=0.234 Sum_probs=32.3
Q ss_pred eEeeceEeCCCCCchhhhccchHHHHHHHhcCcceEEEeeccCCCCceeeecC
Q psy4062 135 EFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLG 187 (409)
Q Consensus 135 ~F~FD~VF~~~asQ~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G 187 (409)
.|.+..+=.....+..++... ..+++.+-+|. .++-||++|+||||-..+
T Consensus 75 ~~~~~d~~~~~~~~~~~l~~~-~~~~~~~~~~~--nl~l~G~~G~GKThLa~A 124 (254)
T COG1484 75 TFEEFDFEFQPGIDKKALEDL-ASLVEFFERGE--NLVLLGPPGVGKTHLAIA 124 (254)
T ss_pred CcccccccCCcchhHHHHHHH-HHHHHHhccCC--cEEEECCCCCcHHHHHHH
Confidence 344444333455667777654 55666665443 468899999999998753
No 72
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=82.29 E-value=0.48 Score=43.78 Aligned_cols=18 Identities=44% Similarity=0.649 Sum_probs=16.1
Q ss_pred eEEEeeccCCCCceeeec
Q psy4062 169 CSVFVYGATGAGKTHTML 186 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm~ 186 (409)
+.|+-.|+||||||.+|.
T Consensus 2 GlilI~GptGSGKTTll~ 19 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLA 19 (198)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 578899999999999984
No 73
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=82.12 E-value=0.7 Score=46.99 Aligned_cols=24 Identities=33% Similarity=0.522 Sum_probs=19.6
Q ss_pred HhcCcceEEEeeccCCCCceeeec
Q psy4062 163 LLEGYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 163 vl~G~N~tI~aYGqTGSGKTyTm~ 186 (409)
++.--.+.|+..|+||||||.||.
T Consensus 129 ~~~~~~glilI~GpTGSGKTTtL~ 152 (358)
T TIGR02524 129 AIAPQEGIVFITGATGSGKSTLLA 152 (358)
T ss_pred HHhccCCEEEEECCCCCCHHHHHH
Confidence 333356899999999999999985
No 74
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=82.09 E-value=0.75 Score=44.66 Aligned_cols=28 Identities=43% Similarity=0.599 Sum_probs=22.1
Q ss_pred HHHHHhcCcceEEEeeccCCCCceeeec
Q psy4062 159 IIASLLEGYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 159 lV~~vl~G~N~tI~aYGqTGSGKTyTm~ 186 (409)
.+..++..-.+.|+-.|.||||||.||.
T Consensus 71 ~l~~~~~~~~GlilisG~tGSGKTT~l~ 98 (264)
T cd01129 71 IFRKLLEKPHGIILVTGPTGSGKTTTLY 98 (264)
T ss_pred HHHHHHhcCCCEEEEECCCCCcHHHHHH
Confidence 4456666556778999999999999984
No 75
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=81.70 E-value=0.51 Score=38.76 Aligned_cols=18 Identities=28% Similarity=0.475 Sum_probs=15.7
Q ss_pred eEEEeeccCCCCceeeec
Q psy4062 169 CSVFVYGATGAGKTHTML 186 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm~ 186 (409)
..++-+|++|||||+++.
T Consensus 3 ~~~~l~G~~G~GKTtl~~ 20 (148)
T smart00382 3 EVILIVGPPGSGKTTLAR 20 (148)
T ss_pred CEEEEECCCCCcHHHHHH
Confidence 457889999999999984
No 76
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=81.50 E-value=0.73 Score=45.62 Aligned_cols=30 Identities=27% Similarity=0.460 Sum_probs=22.4
Q ss_pred hHHHHHHHhcCcceEEEeeccCCCCceeeec
Q psy4062 156 TKDIIASLLEGYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 156 ~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~ 186 (409)
...++..++.+ ...|+..|.||||||.+|.
T Consensus 121 ~~~~L~~~v~~-~~~ilI~G~tGSGKTTll~ 150 (299)
T TIGR02782 121 QRDVLREAVLA-RKNILVVGGTGSGKTTLAN 150 (299)
T ss_pred HHHHHHHHHHc-CCeEEEECCCCCCHHHHHH
Confidence 34556666664 4568899999999999873
No 77
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=81.40 E-value=0.69 Score=47.73 Aligned_cols=50 Identities=34% Similarity=0.566 Sum_probs=30.8
Q ss_pred eeEeeceEeCCCCCchhhhccchHHHHHHHhc-CcceEEEeeccCCCCceeeecC
Q psy4062 134 MEFLFDRVYGPSESNQDVYDGSTKDIIASLLE-GYNCSVFVYGATGAGKTHTMLG 187 (409)
Q Consensus 134 ~~F~FD~VF~~~asQ~eVf~~~~~plV~~vl~-G~N~tI~aYGqTGSGKTyTm~G 187 (409)
..|+||.... ..+++..|... . -+...-. -||- ||-||.+|+||||-|..
T Consensus 82 ~~ytFdnFv~-g~~N~~A~aa~-~-~va~~~g~~~np-lfi~G~~GlGKTHLl~A 132 (408)
T COG0593 82 PKYTFDNFVV-GPSNRLAYAAA-K-AVAENPGGAYNP-LFIYGGVGLGKTHLLQA 132 (408)
T ss_pred CCCchhheee-CCchHHHHHHH-H-HHHhccCCcCCc-EEEECCCCCCHHHHHHH
Confidence 3589988664 44555444421 1 1222222 2554 89999999999999964
No 78
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=81.28 E-value=0.78 Score=42.39 Aligned_cols=28 Identities=21% Similarity=0.361 Sum_probs=20.9
Q ss_pred HHHHHhcCcceEEEeeccCCCCceeeec
Q psy4062 159 IIASLLEGYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 159 lV~~vl~G~N~tI~aYGqTGSGKTyTm~ 186 (409)
.|..++...+..++..|..||||||+|.
T Consensus 9 a~~~~l~~~~~~~~l~G~aGtGKT~~l~ 36 (196)
T PF13604_consen 9 AVRAILTSGDRVSVLQGPAGTGKTTLLK 36 (196)
T ss_dssp HHHHHHHCTCSEEEEEESTTSTHHHHHH
T ss_pred HHHHHHhcCCeEEEEEECCCCCHHHHHH
Confidence 4556666555556678999999999984
No 79
>PF12846 AAA_10: AAA-like domain
Probab=81.16 E-value=0.53 Score=45.18 Aligned_cols=19 Identities=37% Similarity=0.586 Sum_probs=16.2
Q ss_pred ceEEEeeccCCCCceeeec
Q psy4062 168 NCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 168 N~tI~aYGqTGSGKTyTm~ 186 (409)
|.-++..|.||||||++|.
T Consensus 1 n~h~~i~G~tGsGKT~~~~ 19 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK 19 (304)
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 4567899999999999884
No 80
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=80.75 E-value=1 Score=43.98 Aligned_cols=31 Identities=32% Similarity=0.470 Sum_probs=26.3
Q ss_pred hHHHHHHHhcCcceEEEeeccCCCCceeeec
Q psy4062 156 TKDIIASLLEGYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 156 ~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~ 186 (409)
+.++++++.--.-+.|+..|+|||||+.||-
T Consensus 115 LPevlk~la~~kRGLviiVGaTGSGKSTtmA 145 (375)
T COG5008 115 LPEVLKDLALAKRGLVIIVGATGSGKSTTMA 145 (375)
T ss_pred CcHHHHHhhcccCceEEEECCCCCCchhhHH
Confidence 4677888777777889999999999999984
No 81
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=80.58 E-value=1.1 Score=41.56 Aligned_cols=46 Identities=20% Similarity=0.480 Sum_probs=29.6
Q ss_pred eEeeceEeCCCCCchhhhccchHHHHHHHhcCcceEEEeeccCCCCceeeec
Q psy4062 135 EFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 135 ~F~FD~VF~~~asQ~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~ 186 (409)
.++||.... . .+..+++.. +.+ +.......|+-||++|+||||.+.
T Consensus 11 ~~~~~~~~~-~-~~~~~~~~l-~~~---~~~~~~~~lll~G~~G~GKT~la~ 56 (226)
T TIGR03420 11 DPTFDNFYA-G-GNAELLAAL-RQL---AAGKGDRFLYLWGESGSGKSHLLQ 56 (226)
T ss_pred chhhcCcCc-C-CcHHHHHHH-HHH---HhcCCCCeEEEECCCCCCHHHHHH
Confidence 467777663 2 334444422 222 235567789999999999999874
No 82
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=80.50 E-value=1.2 Score=42.50 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=17.8
Q ss_pred hcCcceEEEeeccCCCCceeeec
Q psy4062 164 LEGYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 164 l~G~N~tI~aYGqTGSGKTyTm~ 186 (409)
++.....++-+|+.|+|||+.+.
T Consensus 39 ~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 39 LSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred HhcCCCEEEEEcCCCCCHHHHHH
Confidence 34345578889999999998874
No 83
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=78.90 E-value=1.2 Score=42.67 Aligned_cols=31 Identities=26% Similarity=0.333 Sum_probs=21.2
Q ss_pred EEEeeccCCCCceeeec---CC---CCCCchhhhhhh
Q psy4062 170 SVFVYGATGAGKTHTML---GN---ENHKGIMYLTMG 200 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm~---G~---~~~~GIi~~~~~ 200 (409)
.|...|++|+|||.++- |. +...|++.++.-
T Consensus 28 ~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~ 64 (240)
T smart00053 28 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPL 64 (240)
T ss_pred eEEEEcCCCccHHHHHHHHhCCCccccCCCcccccce
Confidence 37789999999999874 43 233466654433
No 84
>KOG0989|consensus
Probab=78.69 E-value=1.1 Score=44.34 Aligned_cols=36 Identities=25% Similarity=0.321 Sum_probs=23.2
Q ss_pred hhccchHHHHHHHhcC-cceEEEeeccCCCCceeeec
Q psy4062 151 VYDGSTKDIIASLLEG-YNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 151 Vf~~~~~plV~~vl~G-~N~tI~aYGqTGSGKTyTm~ 186 (409)
++++.+-.++.+.+.+ .---.+-||+.|+|||.|..
T Consensus 39 ~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStal 75 (346)
T KOG0989|consen 39 AGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTAL 75 (346)
T ss_pred cchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHH
Confidence 3334444444555444 34456789999999999973
No 85
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=77.62 E-value=1.1 Score=44.74 Aligned_cols=28 Identities=29% Similarity=0.528 Sum_probs=20.5
Q ss_pred HHHHHHHhcCcceEEEeeccCCCCceeee
Q psy4062 157 KDIIASLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 157 ~plV~~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
..++..++.+. ..|+..|.||||||.+|
T Consensus 138 ~~~L~~~v~~~-~~ilI~G~tGSGKTTll 165 (319)
T PRK13894 138 REAIIAAVRAH-RNILVIGGTGSGKTTLV 165 (319)
T ss_pred HHHHHHHHHcC-CeEEEECCCCCCHHHHH
Confidence 45566666653 55677799999999776
No 86
>PRK09183 transposase/IS protein; Provisional
Probab=76.88 E-value=0.99 Score=43.68 Aligned_cols=21 Identities=33% Similarity=0.661 Sum_probs=16.3
Q ss_pred cCcceEEEeeccCCCCceeeecC
Q psy4062 165 EGYNCSVFVYGATGAGKTHTMLG 187 (409)
Q Consensus 165 ~G~N~tI~aYGqTGSGKTyTm~G 187 (409)
.|.| ++-+|++|+||||.+.+
T Consensus 101 ~~~~--v~l~Gp~GtGKThLa~a 121 (259)
T PRK09183 101 RNEN--IVLLGPSGVGKTHLAIA 121 (259)
T ss_pred cCCe--EEEEeCCCCCHHHHHHH
Confidence 4544 66799999999998753
No 87
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=76.83 E-value=1 Score=45.80 Aligned_cols=37 Identities=27% Similarity=0.460 Sum_probs=27.3
Q ss_pred CCCchhhhccchHHHHHHHhcCcceEEEeeccCCCCceeee
Q psy4062 145 SESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 145 ~asQ~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
+..|+.+|+.++..+.. .....+|.-|..|+||||.+
T Consensus 3 n~eQ~~~~~~v~~~~~~----~~~~~~fv~G~~GtGKs~l~ 39 (364)
T PF05970_consen 3 NEEQRRVFDTVIEAIEN----EEGLNFFVTGPAGTGKSFLI 39 (364)
T ss_pred CHHHHHHHHHHHHHHHc----cCCcEEEEEcCCCCChhHHH
Confidence 35688899877554432 34456788999999999997
No 88
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=76.83 E-value=0.84 Score=41.89 Aligned_cols=30 Identities=27% Similarity=0.491 Sum_probs=21.6
Q ss_pred HHHHHHHhcCcceEEEeeccCCCCceeeec
Q psy4062 157 KDIIASLLEGYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 157 ~plV~~vl~G~N~tI~aYGqTGSGKTyTm~ 186 (409)
+.+.+.+-.|.+.+++-||+.|+|||+.|.
T Consensus 9 ~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~ 38 (234)
T PF01637_consen 9 EKLKELLESGPSQHILLYGPRGSGKTSLLK 38 (234)
T ss_dssp HHHHHCHHH--SSEEEEEESTTSSHHHHHH
T ss_pred HHHHHHHHhhcCcEEEEEcCCcCCHHHHHH
Confidence 344444445668889999999999999874
No 89
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=76.35 E-value=1.6 Score=49.33 Aligned_cols=22 Identities=36% Similarity=0.628 Sum_probs=18.1
Q ss_pred cCcceEEEeeccCCCCceeeec
Q psy4062 165 EGYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 165 ~G~N~tI~aYGqTGSGKTyTm~ 186 (409)
.|-+.+|+.||++|+|||.|+-
T Consensus 778 sgpnnvLYIyG~PGTGKTATVK 799 (1164)
T PTZ00112 778 SGSNQILYISGMPGTGKTATVY 799 (1164)
T ss_pred CCCCceEEEECCCCCCHHHHHH
Confidence 3455678899999999999983
No 90
>PF13479 AAA_24: AAA domain
Probab=76.30 E-value=1.1 Score=41.92 Aligned_cols=21 Identities=29% Similarity=0.556 Sum_probs=17.2
Q ss_pred ceEEEeeccCCCCceeeecCC
Q psy4062 168 NCSVFVYGATGAGKTHTMLGN 188 (409)
Q Consensus 168 N~tI~aYGqTGSGKTyTm~G~ 188 (409)
+..++.||++|+|||++...-
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC
Confidence 456899999999999987543
No 91
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=76.19 E-value=1.3 Score=46.43 Aligned_cols=52 Identities=21% Similarity=0.353 Sum_probs=32.9
Q ss_pred ceeEeeceEeCCCCCchhhhccchHHHHHHH--hcC--cceEEEeeccCCCCceeeecC
Q psy4062 133 EMEFLFDRVYGPSESNQDVYDGSTKDIIASL--LEG--YNCSVFVYGATGAGKTHTMLG 187 (409)
Q Consensus 133 ~~~F~FD~VF~~~asQ~eVf~~~~~plV~~v--l~G--~N~tI~aYGqTGSGKTyTm~G 187 (409)
...|+||.-.-. .+++..|. .+..+.+.. ..| ||. ++-||++|+||||.+..
T Consensus 105 ~~~~tFdnFv~g-~~N~~a~~-~a~~~a~~~~~~~~~~~np-l~L~G~~G~GKTHLl~A 160 (445)
T PRK12422 105 DPLMTFANFLVT-PENDLPHR-ILQEFTKVSEQGKGFPFNP-IYLFGPEGSGKTHLMQA 160 (445)
T ss_pred CccccccceeeC-CcHHHHHH-HHHHHHhccccccCCCCce-EEEEcCCCCCHHHHHHH
Confidence 346899987643 35555554 334444332 223 454 68899999999999864
No 92
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=75.58 E-value=1.4 Score=44.26 Aligned_cols=29 Identities=28% Similarity=0.458 Sum_probs=20.9
Q ss_pred HHHHHHHhcCcceEEEeeccCCCCceeeec
Q psy4062 157 KDIIASLLEGYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 157 ~plV~~vl~G~N~tI~aYGqTGSGKTyTm~ 186 (409)
..++..++.+. ..|+-.|.||||||.+|-
T Consensus 134 ~~~L~~~v~~~-~nilI~G~tGSGKTTll~ 162 (323)
T PRK13833 134 ASVIRSAIDSR-LNIVISGGTGSGKTTLAN 162 (323)
T ss_pred HHHHHHHHHcC-CeEEEECCCCCCHHHHHH
Confidence 34555555533 357899999999999983
No 93
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=75.36 E-value=1.5 Score=39.91 Aligned_cols=30 Identities=23% Similarity=0.367 Sum_probs=21.4
Q ss_pred hHHHHHHHhcCcceEEEeeccCCCCceeeec
Q psy4062 156 TKDIIASLLEGYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 156 ~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~ 186 (409)
..+++..++.. ...++-.|+||||||.+|.
T Consensus 14 ~~~~l~~~v~~-g~~i~I~G~tGSGKTTll~ 43 (186)
T cd01130 14 QAAYLWLAVEA-RKNILISGGTGSGKTTLLN 43 (186)
T ss_pred HHHHHHHHHhC-CCEEEEECCCCCCHHHHHH
Confidence 45556665554 3457888999999998873
No 94
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=75.17 E-value=1.6 Score=44.00 Aligned_cols=28 Identities=25% Similarity=0.549 Sum_probs=21.8
Q ss_pred HHHHHHHhcCcceEEEeeccCCCCceeee
Q psy4062 157 KDIIASLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 157 ~plV~~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
..++..++++. +.|+-.|.||||||.++
T Consensus 163 a~~L~~av~~r-~NILisGGTGSGKTTlL 190 (355)
T COG4962 163 AKFLRRAVGIR-CNILISGGTGSGKTTLL 190 (355)
T ss_pred HHHHHHHHhhc-eeEEEeCCCCCCHHHHH
Confidence 44555566665 78999999999999887
No 95
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=75.02 E-value=1.3 Score=36.98 Aligned_cols=15 Identities=33% Similarity=0.643 Sum_probs=13.4
Q ss_pred EEeeccCCCCceeee
Q psy4062 171 VFVYGATGAGKTHTM 185 (409)
Q Consensus 171 I~aYGqTGSGKTyTm 185 (409)
|+-||+.|+|||+..
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 678999999999876
No 96
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=74.97 E-value=1.6 Score=43.08 Aligned_cols=42 Identities=21% Similarity=0.390 Sum_probs=25.6
Q ss_pred eeceEeCCCCCchhhhccchHHHHHHHhcCcceEEEeeccCCCCceeeec
Q psy4062 137 LFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 137 ~FD~VF~~~asQ~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~ 186 (409)
.||.+.+ |+++.+ .+...+-.|....++-||++|+|||+++.
T Consensus 13 ~~~~~~g----~~~~~~----~L~~~~~~~~~~~lll~Gp~GtGKT~la~ 54 (337)
T PRK12402 13 LLEDILG----QDEVVE----RLSRAVDSPNLPHLLVQGPPGSGKTAAVR 54 (337)
T ss_pred cHHHhcC----CHHHHH----HHHHHHhCCCCceEEEECCCCCCHHHHHH
Confidence 3666664 344332 22222334443458889999999999873
No 97
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=74.94 E-value=1 Score=41.75 Aligned_cols=17 Identities=41% Similarity=0.636 Sum_probs=14.8
Q ss_pred EEEeeccCCCCceeeec
Q psy4062 170 SVFVYGATGAGKTHTML 186 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm~ 186 (409)
.|+-.|+||+|||.|+.
T Consensus 3 vi~lvGptGvGKTTt~a 19 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIA 19 (196)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCchHhHHH
Confidence 46789999999999974
No 98
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=74.23 E-value=1.6 Score=40.00 Aligned_cols=26 Identities=35% Similarity=0.517 Sum_probs=16.5
Q ss_pred HHHHhcCcceEEEeeccCCCCceeeec
Q psy4062 160 IASLLEGYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 160 V~~vl~G~N~tI~aYGqTGSGKTyTm~ 186 (409)
|..++.--. ..+..|+.|||||+|+.
T Consensus 10 i~~~~~~~~-~~~i~GpPGTGKT~~l~ 35 (236)
T PF13086_consen 10 IQSALSSNG-ITLIQGPPGTGKTTTLA 35 (236)
T ss_dssp HHHHCTSSE--EEEE-STTSSHHHHHH
T ss_pred HHHHHcCCC-CEEEECCCCCChHHHHH
Confidence 344443333 45679999999999874
No 99
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=73.82 E-value=1.9 Score=37.76 Aligned_cols=28 Identities=39% Similarity=0.504 Sum_probs=19.2
Q ss_pred HHHHHhcCcceEEEeeccCCCCceeeecC
Q psy4062 159 IIASLLEGYNCSVFVYGATGAGKTHTMLG 187 (409)
Q Consensus 159 lV~~vl~G~N~tI~aYGqTGSGKTyTm~G 187 (409)
+++.++++. ..++..|++|||||.++..
T Consensus 16 ~~~~~~~~~-~~~~i~~~~GsGKT~~~~~ 43 (201)
T smart00487 16 AIEALLSGL-RDVILAAPTGSGKTLAALL 43 (201)
T ss_pred HHHHHHcCC-CcEEEECCCCCchhHHHHH
Confidence 344555542 3457788999999998754
No 100
>PHA00729 NTP-binding motif containing protein
Probab=73.69 E-value=2.6 Score=40.06 Aligned_cols=31 Identities=29% Similarity=0.460 Sum_probs=23.1
Q ss_pred hHHHHHHHhcCcceEEEeeccCCCCceeeec
Q psy4062 156 TKDIIASLLEGYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 156 ~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~ 186 (409)
++-+++.+..|--..|+.+|.+|+||||-..
T Consensus 5 ~k~~~~~l~~~~f~nIlItG~pGvGKT~LA~ 35 (226)
T PHA00729 5 AKKIVSAYNNNGFVSAVIFGKQGSGKTTYAL 35 (226)
T ss_pred HHHHHHHHhcCCeEEEEEECCCCCCHHHHHH
Confidence 3556666665444579999999999998764
No 101
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=73.52 E-value=2.2 Score=40.04 Aligned_cols=20 Identities=45% Similarity=0.541 Sum_probs=14.3
Q ss_pred cceEEEeeccCCCCceeeec
Q psy4062 167 YNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 167 ~N~tI~aYGqTGSGKTyTm~ 186 (409)
.+-.+++.|+.||||||...
T Consensus 18 ~~~~v~~~G~AGTGKT~LA~ 37 (205)
T PF02562_consen 18 NNDLVIVNGPAGTGKTFLAL 37 (205)
T ss_dssp H-SEEEEE--TTSSTTHHHH
T ss_pred hCCeEEEECCCCCcHHHHHH
Confidence 55689999999999998753
No 102
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=72.52 E-value=2 Score=42.18 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=17.0
Q ss_pred cCc-ceEEEeeccCCCCceeeec
Q psy4062 165 EGY-NCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 165 ~G~-N~tI~aYGqTGSGKTyTm~ 186 (409)
.|. ...++-||++|+|||+.+.
T Consensus 39 ~~~~~~~lll~G~~G~GKT~la~ 61 (316)
T PHA02544 39 KGRIPNMLLHSPSPGTGKTTVAK 61 (316)
T ss_pred cCCCCeEEEeeCcCCCCHHHHHH
Confidence 554 4566679999999999874
No 103
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=72.13 E-value=1.7 Score=36.03 Aligned_cols=16 Identities=25% Similarity=0.584 Sum_probs=13.9
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
.|+-.|.+|||||+..
T Consensus 1 vI~I~G~~gsGKST~a 16 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLA 16 (121)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 4788999999999875
No 104
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=71.53 E-value=2.5 Score=38.41 Aligned_cols=25 Identities=40% Similarity=0.570 Sum_probs=18.9
Q ss_pred HHHHHhcCcceEEEeeccCCCCceeee
Q psy4062 159 IIASLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 159 lV~~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
.++.+++|.| ++..++||+|||.+.
T Consensus 29 ~~~~~~~~~~--~li~~~TG~GKT~~~ 53 (203)
T cd00268 29 AIPPLLSGRD--VIGQAQTGSGKTAAF 53 (203)
T ss_pred HHHHHhcCCc--EEEECCCCCcHHHHH
Confidence 4455666877 577889999999873
No 105
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=71.29 E-value=2.1 Score=43.29 Aligned_cols=30 Identities=23% Similarity=0.433 Sum_probs=21.1
Q ss_pred hHHHHHHHhcCcceEEEeeccCCCCceeeec
Q psy4062 156 TKDIIASLLEGYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 156 ~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~ 186 (409)
...++..++.+ ...|+..|.||||||.+|.
T Consensus 151 ~~~~l~~~v~~-~~nilI~G~tGSGKTTll~ 180 (344)
T PRK13851 151 LEAFLHACVVG-RLTMLLCGPTGSGKTTMSK 180 (344)
T ss_pred HHHHHHHHHHc-CCeEEEECCCCccHHHHHH
Confidence 34455555542 3457889999999999884
No 106
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=71.04 E-value=0.95 Score=40.21 Aligned_cols=21 Identities=29% Similarity=0.569 Sum_probs=12.7
Q ss_pred cCcceEEEeeccCCCCceeee
Q psy4062 165 EGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 165 ~G~N~tI~aYGqTGSGKTyTm 185 (409)
.|-...++.+|..|+|||+.+
T Consensus 21 ~~~~~~~ll~G~~G~GKT~ll 41 (185)
T PF13191_consen 21 SGSPRNLLLTGESGSGKTSLL 41 (185)
T ss_dssp S-----EEE-B-TTSSHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHH
Confidence 566778999999999999986
No 107
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=71.00 E-value=1.6 Score=42.16 Aligned_cols=20 Identities=35% Similarity=0.564 Sum_probs=16.0
Q ss_pred cceEEEeeccCCCCceeeec
Q psy4062 167 YNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 167 ~N~tI~aYGqTGSGKTyTm~ 186 (409)
.+..++.-|..|||||+||.
T Consensus 12 ~~~~~lV~a~AGSGKT~~l~ 31 (315)
T PF00580_consen 12 TEGPLLVNAGAGSGKTTTLL 31 (315)
T ss_dssp -SSEEEEEE-TTSSHHHHHH
T ss_pred CCCCEEEEeCCCCCchHHHH
Confidence 66778888999999999996
No 108
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=70.92 E-value=2.1 Score=43.03 Aligned_cols=29 Identities=21% Similarity=0.299 Sum_probs=20.6
Q ss_pred HHHHHHHhcCcceEEEeeccCCCCceeeec
Q psy4062 157 KDIIASLLEGYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 157 ~plV~~vl~G~N~tI~aYGqTGSGKTyTm~ 186 (409)
..++..++.+. ..|+..|.||||||.+|-
T Consensus 150 ~~~L~~~v~~~-~nili~G~tgSGKTTll~ 178 (332)
T PRK13900 150 KEFLEHAVISK-KNIIISGGTSTGKTTFTN 178 (332)
T ss_pred HHHHHHHHHcC-CcEEEECCCCCCHHHHHH
Confidence 44555555443 447889999999999873
No 109
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=70.90 E-value=1.3 Score=40.70 Aligned_cols=17 Identities=35% Similarity=0.667 Sum_probs=13.1
Q ss_pred EEEeeccCCCCceeeec
Q psy4062 170 SVFVYGATGAGKTHTML 186 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm~ 186 (409)
-++.+|+||||||.+|.
T Consensus 40 h~li~G~tgsGKS~~l~ 56 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLR 56 (205)
T ss_dssp SEEEE--TTSSHHHHHH
T ss_pred eEEEEcCCCCCccHHHH
Confidence 57999999999999874
No 110
>PRK06921 hypothetical protein; Provisional
Probab=70.41 E-value=2.1 Score=41.66 Aligned_cols=31 Identities=23% Similarity=0.426 Sum_probs=21.7
Q ss_pred HHHHHHHhc---CcceEEEeeccCCCCceeeecC
Q psy4062 157 KDIIASLLE---GYNCSVFVYGATGAGKTHTMLG 187 (409)
Q Consensus 157 ~plV~~vl~---G~N~tI~aYGqTGSGKTyTm~G 187 (409)
...++++-+ +..-.++-||++|+||||.+.+
T Consensus 103 ~~~~~~f~~~~~~~~~~l~l~G~~G~GKThLa~a 136 (266)
T PRK06921 103 VEYVKDFEKIQESRKNSIALLGQPGSGKTHLLTA 136 (266)
T ss_pred HHHHHHHHHhcccCCCeEEEECCCCCcHHHHHHH
Confidence 445555432 2345689999999999999864
No 111
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=69.92 E-value=1.3 Score=36.66 Aligned_cols=15 Identities=33% Similarity=0.875 Sum_probs=13.4
Q ss_pred EEeeccCCCCceeee
Q psy4062 171 VFVYGATGAGKTHTM 185 (409)
Q Consensus 171 I~aYGqTGSGKTyTm 185 (409)
|+-||++|.|||+.+
T Consensus 1 I~i~G~~G~GKS~l~ 15 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLA 15 (107)
T ss_pred CEEECCCCCCHHHHH
Confidence 578999999999887
No 112
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=69.49 E-value=1.1 Score=38.69 Aligned_cols=17 Identities=35% Similarity=0.364 Sum_probs=13.3
Q ss_pred eEEEe-eccCCCCceeee
Q psy4062 169 CSVFV-YGATGAGKTHTM 185 (409)
Q Consensus 169 ~tI~a-YGqTGSGKTyTm 185 (409)
..|++ .|.||+||||+-
T Consensus 53 pLVlSfHG~tGtGKn~v~ 70 (127)
T PF06309_consen 53 PLVLSFHGWTGTGKNFVS 70 (127)
T ss_pred CEEEEeecCCCCcHHHHH
Confidence 34554 899999999974
No 113
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=68.93 E-value=2.1 Score=38.79 Aligned_cols=17 Identities=29% Similarity=0.559 Sum_probs=14.9
Q ss_pred eEEEeeccCCCCceeee
Q psy4062 169 CSVFVYGATGAGKTHTM 185 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm 185 (409)
+.++-+|+||+|||++.
T Consensus 4 ~~~ll~GpsGvGKT~la 20 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELA 20 (171)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 56889999999999965
No 114
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=68.50 E-value=2.1 Score=36.52 Aligned_cols=15 Identities=27% Similarity=0.647 Sum_probs=13.4
Q ss_pred EEeeccCCCCceeee
Q psy4062 171 VFVYGATGAGKTHTM 185 (409)
Q Consensus 171 I~aYGqTGSGKTyTm 185 (409)
|+..|..|||||+-.
T Consensus 2 ii~~G~pgsGKSt~a 16 (143)
T PF13671_consen 2 IILCGPPGSGKSTLA 16 (143)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999875
No 115
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=68.40 E-value=1.6 Score=37.26 Aligned_cols=15 Identities=40% Similarity=0.674 Sum_probs=13.5
Q ss_pred EEeeccCCCCceeee
Q psy4062 171 VFVYGATGAGKTHTM 185 (409)
Q Consensus 171 I~aYGqTGSGKTyTm 185 (409)
|+-+|++|+|||..+
T Consensus 2 vlL~G~~G~GKt~l~ 16 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLA 16 (139)
T ss_dssp EEEEESSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 688999999999875
No 116
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=68.38 E-value=3.1 Score=42.69 Aligned_cols=52 Identities=19% Similarity=0.234 Sum_probs=36.6
Q ss_pred eeEeeceEeCCCCCchhhhccchHHHHHHHhc----CcceEEEeeccCCCCceeee
Q psy4062 134 MEFLFDRVYGPSESNQDVYDGSTKDIIASLLE----GYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 134 ~~F~FD~VF~~~asQ~eVf~~~~~plV~~vl~----G~N~tI~aYGqTGSGKTyTm 185 (409)
..+.||.+.+.----..+.+.++..+..+++. -.---++-||+.|+|||+..
T Consensus 110 ~~~~f~~~~g~~~~~p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTllA 165 (413)
T PLN00020 110 RTRSFDNLVGGYYIAPAFMDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSFQC 165 (413)
T ss_pred hhcchhhhcCccccCHHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHHHH
Confidence 35778888765555556666667777777763 23345777999999999874
No 117
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=68.31 E-value=3.7 Score=42.84 Aligned_cols=24 Identities=33% Similarity=0.571 Sum_probs=19.1
Q ss_pred HHHHHhcCcceEEEeeccCCCCceee
Q psy4062 159 IIASLLEGYNCSVFVYGATGAGKTHT 184 (409)
Q Consensus 159 lV~~vl~G~N~tI~aYGqTGSGKTyT 184 (409)
.+..+++|.| +++.++||||||.+
T Consensus 34 ai~~~l~g~d--vi~~a~TGsGKT~a 57 (460)
T PRK11776 34 SLPAILAGKD--VIAQAKTGSGKTAA 57 (460)
T ss_pred HHHHHhcCCC--EEEECCCCCcHHHH
Confidence 4456778988 67788999999965
No 118
>PRK13342 recombination factor protein RarA; Reviewed
Probab=68.20 E-value=2.8 Score=43.34 Aligned_cols=39 Identities=21% Similarity=0.325 Sum_probs=25.3
Q ss_pred CchhhhccchHHHHHHHhcCcceEEEeeccCCCCceeeec
Q psy4062 147 SNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 147 sQ~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~ 186 (409)
.|+.+... ..++...+-.+.-..++-||+.|+|||+...
T Consensus 16 Gq~~~v~~-~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 16 GQEHLLGP-GKPLRRMIEAGRLSSMILWGPPGTGKTTLAR 54 (413)
T ss_pred CcHHHhCc-chHHHHHHHcCCCceEEEECCCCCCHHHHHH
Confidence 35555543 2334444445555577779999999998774
No 119
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=67.74 E-value=3 Score=43.04 Aligned_cols=25 Identities=36% Similarity=0.559 Sum_probs=20.2
Q ss_pred HHHHHHhcCcceEEEeeccCCCCceee
Q psy4062 158 DIIASLLEGYNCSVFVYGATGAGKTHT 184 (409)
Q Consensus 158 plV~~vl~G~N~tI~aYGqTGSGKTyT 184 (409)
..+..+++|.| +++.++||||||.+
T Consensus 30 ~ai~~~~~g~d--~l~~apTGsGKT~~ 54 (434)
T PRK11192 30 EAIPPALDGRD--VLGSAPTGTGKTAA 54 (434)
T ss_pred HHHHHHhCCCC--EEEECCCCChHHHH
Confidence 34556778887 78889999999986
No 120
>PRK13764 ATPase; Provisional
Probab=67.69 E-value=2.5 Score=45.85 Aligned_cols=20 Identities=30% Similarity=0.433 Sum_probs=16.8
Q ss_pred cceEEEeeccCCCCceeeec
Q psy4062 167 YNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 167 ~N~tI~aYGqTGSGKTyTm~ 186 (409)
....|+..|+||||||+++.
T Consensus 256 ~~~~ILIsG~TGSGKTTll~ 275 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFAQ 275 (602)
T ss_pred cCCEEEEECCCCCCHHHHHH
Confidence 34558999999999999985
No 121
>PRK06547 hypothetical protein; Provisional
Probab=67.44 E-value=4.5 Score=36.61 Aligned_cols=29 Identities=34% Similarity=0.397 Sum_probs=20.0
Q ss_pred HHHHHHHhcCcceEEEeeccCCCCceeee
Q psy4062 157 KDIIASLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 157 ~plV~~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
..++..+..+.---|..+|.+|||||+..
T Consensus 4 ~~~~~~~~~~~~~~i~i~G~~GsGKTt~a 32 (172)
T PRK06547 4 ALIAARLCGGGMITVLIDGRSGSGKTTLA 32 (172)
T ss_pred HHHHHHhhcCCCEEEEEECCCCCCHHHHH
Confidence 34455555555555666899999999865
No 122
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=67.13 E-value=2.2 Score=41.71 Aligned_cols=18 Identities=39% Similarity=0.637 Sum_probs=15.3
Q ss_pred ceEEEeeccCCCCceeee
Q psy4062 168 NCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 168 N~tI~aYGqTGSGKTyTm 185 (409)
--.|+-||++|+|||++-
T Consensus 151 PknVLFyGppGTGKTm~A 168 (368)
T COG1223 151 PKNVLFYGPPGTGKTMMA 168 (368)
T ss_pred cceeEEECCCCccHHHHH
Confidence 456899999999999875
No 123
>KOG0926|consensus
Probab=66.80 E-value=3.8 Score=45.57 Aligned_cols=18 Identities=44% Similarity=0.687 Sum_probs=15.5
Q ss_pred ceEEEeeccCCCCceeee
Q psy4062 168 NCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 168 N~tI~aYGqTGSGKTyTm 185 (409)
|-.++.+|+||||||.-+
T Consensus 271 n~vvIIcGeTGsGKTTQv 288 (1172)
T KOG0926|consen 271 NPVVIICGETGSGKTTQV 288 (1172)
T ss_pred CCeEEEecCCCCCccccc
Confidence 556788999999999887
No 124
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=66.68 E-value=3.3 Score=44.22 Aligned_cols=31 Identities=23% Similarity=0.476 Sum_probs=23.5
Q ss_pred hHHHHHHHhcCcc--eEEEeeccCCCCceeeec
Q psy4062 156 TKDIIASLLEGYN--CSVFVYGATGAGKTHTML 186 (409)
Q Consensus 156 ~~plV~~vl~G~N--~tI~aYGqTGSGKTyTm~ 186 (409)
++..++..+.|.. .-++.+|++|||||.|+-
T Consensus 31 V~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~ 63 (519)
T PF03215_consen 31 VRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVK 63 (519)
T ss_pred HHHHHHHHhccCCCcceEEEECCCCCCHHHHHH
Confidence 4666676666653 467889999999999983
No 125
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=66.56 E-value=1.3 Score=45.48 Aligned_cols=50 Identities=26% Similarity=0.428 Sum_probs=29.2
Q ss_pred EeeceEeCCCCCchhhhccchHHHHHH-Hhc--C--cceEEEeeccCCCCceeee
Q psy4062 136 FLFDRVYGPSESNQDVYDGSTKDIIAS-LLE--G--YNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 136 F~FD~VF~~~asQ~eVf~~~~~plV~~-vl~--G--~N~tI~aYGqTGSGKTyTm 185 (409)
+.||.|-+-+..-+++.+.+..|+... .+. | ....|+-||++|+|||+..
T Consensus 128 ~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 128 VTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHH
Confidence 556666554443344444443444332 222 2 2346899999999999875
No 126
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=66.45 E-value=5.6 Score=37.95 Aligned_cols=43 Identities=21% Similarity=0.255 Sum_probs=27.8
Q ss_pred eCCCCCchhhhccchHHHHHHHhc-C-cceEEEeeccCCCCceeee
Q psy4062 142 YGPSESNQDVYDGSTKDIIASLLE-G-YNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 142 F~~~asQ~eVf~~~~~plV~~vl~-G-~N~tI~aYGqTGSGKTyTm 185 (409)
|++-..|+++-.. .+.+++.+.. | .-..++-||+.|.|||...
T Consensus 23 L~efiGQ~~l~~~-l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA 67 (233)
T PF05496_consen 23 LDEFIGQEHLKGN-LKILIRAAKKRGEALDHMLFYGPPGLGKTTLA 67 (233)
T ss_dssp CCCS-S-HHHHHH-HHHHHHHHHCTTS---EEEEESSTTSSHHHHH
T ss_pred HHHccCcHHHHhh-hHHHHHHHHhcCCCcceEEEECCCccchhHHH
Confidence 3455668888875 4777777764 2 3346889999999998643
No 127
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=66.43 E-value=2.2 Score=41.82 Aligned_cols=17 Identities=41% Similarity=0.642 Sum_probs=14.4
Q ss_pred EEEeeccCCCCceeeec
Q psy4062 170 SVFVYGATGAGKTHTML 186 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm~ 186 (409)
.|+-.|+||+|||+|+.
T Consensus 196 vi~~vGptGvGKTTt~~ 212 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLA 212 (282)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 56667999999999984
No 128
>PLN03025 replication factor C subunit; Provisional
Probab=66.02 E-value=3.4 Score=40.97 Aligned_cols=21 Identities=33% Similarity=0.599 Sum_probs=16.2
Q ss_pred CcceEEEeeccCCCCceeeec
Q psy4062 166 GYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 166 G~N~tI~aYGqTGSGKTyTm~ 186 (409)
|.-..++-||+.|+|||++..
T Consensus 32 ~~~~~lll~Gp~G~GKTtla~ 52 (319)
T PLN03025 32 GNMPNLILSGPPGTGKTTSIL 52 (319)
T ss_pred CCCceEEEECCCCCCHHHHHH
Confidence 433446779999999999875
No 129
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=65.88 E-value=2.7 Score=41.06 Aligned_cols=40 Identities=20% Similarity=0.211 Sum_probs=24.1
Q ss_pred CCchhhhccchHHHHHHHhc--CcceEEEeeccCCCCceeeec
Q psy4062 146 ESNQDVYDGSTKDIIASLLE--GYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 146 asQ~eVf~~~~~plV~~vl~--G~N~tI~aYGqTGSGKTyTm~ 186 (409)
..|+++.+. +..+++.... +....++-||+.|+|||+...
T Consensus 7 iG~~~~~~~-l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~ 48 (305)
T TIGR00635 7 IGQEKVKEQ-LQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAH 48 (305)
T ss_pred cCHHHHHHH-HHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHH
Confidence 445666554 2334443322 222347779999999999874
No 130
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=65.44 E-value=3.5 Score=42.51 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=19.2
Q ss_pred HHHHHhcCcceEEEeeccCCCCceeee
Q psy4062 159 IIASLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 159 lV~~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
.+..+++|.|. ++-++||||||.+.
T Consensus 38 aip~il~g~dv--i~~ApTGsGKTla~ 62 (423)
T PRK04837 38 ALPLTLAGRDV--AGQAQTGTGKTMAF 62 (423)
T ss_pred HHHHHhCCCcE--EEECCCCchHHHHH
Confidence 45567889884 66779999999753
No 131
>PTZ00424 helicase 45; Provisional
Probab=65.31 E-value=4.5 Score=41.05 Aligned_cols=26 Identities=35% Similarity=0.583 Sum_probs=20.2
Q ss_pred HHHHHHhcCcceEEEeeccCCCCceeee
Q psy4062 158 DIIASLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 158 plV~~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
..+..+++|.|. +..++||||||.+.
T Consensus 57 ~ai~~i~~~~d~--ii~apTGsGKT~~~ 82 (401)
T PTZ00424 57 RGIKPILDGYDT--IGQAQSGTGKTATF 82 (401)
T ss_pred HHHHHHhCCCCE--EEECCCCChHHHHH
Confidence 455667889985 46789999999764
No 132
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=65.09 E-value=3.9 Score=44.66 Aligned_cols=42 Identities=24% Similarity=0.508 Sum_probs=30.1
Q ss_pred EeeceEeCCCCCchhhhccchHHHHHHHhcCcceEEEeeccCCCCceeee
Q psy4062 136 FLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 136 F~FD~VF~~~asQ~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
-.||.+++. ... +..++..+..++...++-||++|+|||+..
T Consensus 151 ~~~~~iiGq----s~~----~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLA 192 (615)
T TIGR02903 151 RAFSEIVGQ----ERA----IKALLAKVASPFPQHIILYGPPGVGKTTAA 192 (615)
T ss_pred CcHHhceeC----cHH----HHHHHHHHhcCCCCeEEEECCCCCCHHHHH
Confidence 457777763 222 234556666788888999999999999865
No 133
>PRK10536 hypothetical protein; Provisional
Probab=65.07 E-value=4 Score=39.72 Aligned_cols=41 Identities=17% Similarity=0.224 Sum_probs=26.7
Q ss_pred EeeceEeCCCCCchhhhccchHHHHHHHhcCcceEEEeeccCCCCceeeec
Q psy4062 136 FLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 136 F~FD~VF~~~asQ~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~ 186 (409)
|.|-.+-+-+..|....+ .+.+ +.-++..|++||||||...
T Consensus 52 ~~~~~i~p~n~~Q~~~l~--------al~~--~~lV~i~G~aGTGKT~La~ 92 (262)
T PRK10536 52 RDTSPILARNEAQAHYLK--------AIES--KQLIFATGEAGCGKTWISA 92 (262)
T ss_pred cCCccccCCCHHHHHHHH--------HHhc--CCeEEEECCCCCCHHHHHH
Confidence 555556555555554333 3333 3488999999999998763
No 134
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=64.96 E-value=3.2 Score=45.83 Aligned_cols=35 Identities=26% Similarity=0.474 Sum_probs=26.5
Q ss_pred hhhccchHHHHHHHh-cCcceEEEeeccCCCCceeee
Q psy4062 150 DVYDGSTKDIIASLL-EGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 150 eVf~~~~~plV~~vl-~G~N~tI~aYGqTGSGKTyTm 185 (409)
.||. ++......++ .+.|.||+..|.+|||||.++
T Consensus 67 Hif~-~a~~A~~~m~~~~~~Q~IiisGeSGsGKTe~~ 102 (689)
T PF00063_consen 67 HIFA-VAQRAYRQMLRTRQNQSIIISGESGSGKTETS 102 (689)
T ss_dssp SHHH-HHHHHHHHHHHHTSEEEEEEEESTTSSHHHHH
T ss_pred ccch-hhhcccccccccccccceeeccccccccccch
Confidence 4565 3344445554 589999999999999999985
No 135
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=64.76 E-value=3.9 Score=42.74 Aligned_cols=24 Identities=38% Similarity=0.598 Sum_probs=19.5
Q ss_pred HHHHHhcCcceEEEeeccCCCCceee
Q psy4062 159 IIASLLEGYNCSVFVYGATGAGKTHT 184 (409)
Q Consensus 159 lV~~vl~G~N~tI~aYGqTGSGKTyT 184 (409)
.+..+++|.| +++..+||||||.+
T Consensus 31 ai~~il~g~d--vlv~apTGsGKTla 54 (456)
T PRK10590 31 AIPAVLEGRD--LMASAQTGTGKTAG 54 (456)
T ss_pred HHHHHhCCCC--EEEECCCCCcHHHH
Confidence 4556788988 67788999999986
No 136
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=64.62 E-value=2.8 Score=34.71 Aligned_cols=15 Identities=33% Similarity=0.521 Sum_probs=13.1
Q ss_pred EEeeccCCCCceeee
Q psy4062 171 VFVYGATGAGKTHTM 185 (409)
Q Consensus 171 I~aYGqTGSGKTyTm 185 (409)
|+-.|.+|||||...
T Consensus 1 I~i~G~~GsGKtTia 15 (129)
T PF13238_consen 1 IGISGIPGSGKTTIA 15 (129)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred CEEECCCCCCHHHHH
Confidence 677899999999875
No 137
>PRK04328 hypothetical protein; Provisional
Probab=63.99 E-value=5.2 Score=38.35 Aligned_cols=28 Identities=25% Similarity=0.338 Sum_probs=23.1
Q ss_pred hHHHHHHHhcC---cceEEEeeccCCCCcee
Q psy4062 156 TKDIIASLLEG---YNCSVFVYGATGAGKTH 183 (409)
Q Consensus 156 ~~plV~~vl~G---~N~tI~aYGqTGSGKTy 183 (409)
+-+-+|.++.| ....++.+|.+|||||-
T Consensus 8 Gi~~LD~lL~GGip~gs~ili~G~pGsGKT~ 38 (249)
T PRK04328 8 GIPGMDEILYGGIPERNVVLLSGGPGTGKSI 38 (249)
T ss_pred CchhHHHHhcCCCcCCcEEEEEcCCCCCHHH
Confidence 44568888876 57889999999999974
No 138
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=63.46 E-value=2.6 Score=43.33 Aligned_cols=19 Identities=37% Similarity=0.550 Sum_probs=16.5
Q ss_pred ceEEEeeccCCCCceeeec
Q psy4062 168 NCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 168 N~tI~aYGqTGSGKTyTm~ 186 (409)
...|+.+|+||+|||.|+.
T Consensus 174 ~~vi~lvGptGvGKTTT~a 192 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIA 192 (388)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4578889999999999983
No 139
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=63.40 E-value=2.7 Score=40.47 Aligned_cols=18 Identities=28% Similarity=0.401 Sum_probs=15.2
Q ss_pred eEEEeeccCCCCceeeec
Q psy4062 169 CSVFVYGATGAGKTHTML 186 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm~ 186 (409)
..++-||++|+|||++..
T Consensus 43 ~~vll~GppGtGKTtlA~ 60 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVAR 60 (261)
T ss_pred ceEEEEcCCCCCHHHHHH
Confidence 457889999999999863
No 140
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=63.20 E-value=4.4 Score=37.23 Aligned_cols=25 Identities=36% Similarity=0.571 Sum_probs=19.1
Q ss_pred HHHhcCc---ceEEEeeccCCCCceeee
Q psy4062 161 ASLLEGY---NCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 161 ~~vl~G~---N~tI~aYGqTGSGKTyTm 185 (409)
|.++.|- ...+.-||.+|||||.-.
T Consensus 2 D~~l~GGi~~g~i~~i~G~~GsGKT~l~ 29 (209)
T TIGR02237 2 DELLGGGVERGTITQIYGPPGSGKTNIC 29 (209)
T ss_pred hhhhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 4556543 677888999999999764
No 141
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=62.62 E-value=5.6 Score=44.67 Aligned_cols=26 Identities=31% Similarity=0.510 Sum_probs=21.5
Q ss_pred HHHHHhcCcceEEEeeccCCCCceeeec
Q psy4062 159 IIASLLEGYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 159 lV~~vl~G~N~tI~aYGqTGSGKTyTm~ 186 (409)
.+..+.+|.|+.|.| +||||||-+-|
T Consensus 30 a~~~i~~G~nvLiiA--PTGsGKTeAAf 55 (814)
T COG1201 30 AIPEIHSGENVLIIA--PTGSGKTEAAF 55 (814)
T ss_pred HHHHHhCCCceEEEc--CCCCChHHHHH
Confidence 345678999998888 99999998754
No 142
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=62.52 E-value=2.6 Score=42.80 Aligned_cols=45 Identities=22% Similarity=0.420 Sum_probs=31.7
Q ss_pred eeEeeceEeCCCCCchhhhccchHHHHHHHhcCcceEEEeeccCCCCceeeec
Q psy4062 134 MEFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 134 ~~F~FD~VF~~~asQ~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~ 186 (409)
..|.|+.|-++ ++ ...-|+..+.+-.-+.|+.+|.+|||||+.+-
T Consensus 12 ~~~pf~~ivGq----~~----~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar 56 (350)
T CHL00081 12 PVFPFTAIVGQ----EE----MKLALILNVIDPKIGGVMIMGDRGTGKSTTIR 56 (350)
T ss_pred CCCCHHHHhCh----HH----HHHHHHHhccCCCCCeEEEEcCCCCCHHHHHH
Confidence 36889988874 33 33445555555444568899999999999874
No 143
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=62.52 E-value=2.9 Score=38.43 Aligned_cols=19 Identities=21% Similarity=0.396 Sum_probs=14.6
Q ss_pred ceEEEeeccCCCCceeeec
Q psy4062 168 NCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 168 N~tI~aYGqTGSGKTyTm~ 186 (409)
-..+|..|+.|||||+.+.
T Consensus 15 P~~~i~aG~~GsGKSt~~~ 33 (199)
T PF06414_consen 15 PTLIIIAGQPGSGKSTLAR 33 (199)
T ss_dssp -EEEEEES-TTSTTHHHHH
T ss_pred CEEEEEeCCCCCCHHHHHH
Confidence 4578999999999998763
No 144
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=62.33 E-value=2.9 Score=42.75 Aligned_cols=19 Identities=37% Similarity=0.450 Sum_probs=16.1
Q ss_pred ceEEEeeccCCCCceeeec
Q psy4062 168 NCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 168 N~tI~aYGqTGSGKTyTm~ 186 (409)
...++-.|+||+|||+|+.
T Consensus 137 g~ii~lvGptGvGKTTtia 155 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTA 155 (374)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3567789999999999984
No 145
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=62.16 E-value=4.6 Score=44.51 Aligned_cols=31 Identities=32% Similarity=0.359 Sum_probs=21.2
Q ss_pred hHHHHHHHhc-----CcceEEEeeccCCCCceeeecC
Q psy4062 156 TKDIIASLLE-----GYNCSVFVYGATGAGKTHTMLG 187 (409)
Q Consensus 156 ~~plV~~vl~-----G~N~tI~aYGqTGSGKTyTm~G 187 (409)
+..+++++.+ |.+..++.. +||||||+||..
T Consensus 247 v~~~~~~~~~~~~~~~~~~gli~~-~TGsGKT~t~~~ 282 (667)
T TIGR00348 247 VKKIVESITRKTWGKDERGGLIWH-TQGSGKTLTMLF 282 (667)
T ss_pred HHHHHHHHHhcccCCCCceeEEEE-ecCCCccHHHHH
Confidence 4556666665 344555444 999999999964
No 146
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=60.71 E-value=5.9 Score=37.00 Aligned_cols=30 Identities=27% Similarity=0.442 Sum_probs=23.7
Q ss_pred hHHHHHHHhcC---cceEEEeeccCCCCceeee
Q psy4062 156 TKDIIASLLEG---YNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 156 ~~plV~~vl~G---~N~tI~aYGqTGSGKTyTm 185 (409)
+-+-+|.++.| ....+.-+|++|||||.-+
T Consensus 4 G~~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 36 (235)
T cd01123 4 GSKALDELLGGGIETGSITEIFGEFGSGKTQLC 36 (235)
T ss_pred CchhhHhhccCCCCCCeEEEEECCCCCCHHHHH
Confidence 45667888875 4567788999999999766
No 147
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=60.68 E-value=4.8 Score=39.28 Aligned_cols=21 Identities=29% Similarity=0.373 Sum_probs=16.7
Q ss_pred cCcceEEEeeccCCCCceeee
Q psy4062 165 EGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 165 ~G~N~tI~aYGqTGSGKTyTm 185 (409)
.|...-++-||+.|+|||+++
T Consensus 35 ~~~~~~~ll~G~~G~GKt~~~ 55 (319)
T PRK00440 35 EKNMPHLLFAGPPGTGKTTAA 55 (319)
T ss_pred CCCCCeEEEECCCCCCHHHHH
Confidence 454445788999999999877
No 148
>PHA02244 ATPase-like protein
Probab=60.64 E-value=6.4 Score=40.30 Aligned_cols=35 Identities=26% Similarity=0.389 Sum_probs=21.5
Q ss_pred hhhccchHHHHHHHhcCcceEEEeeccCCCCceeeec
Q psy4062 150 DVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 150 eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~ 186 (409)
..+......+...+-.|.+. +-+|++|+|||+-..
T Consensus 103 p~~~~~~~ri~r~l~~~~PV--LL~GppGtGKTtLA~ 137 (383)
T PHA02244 103 PTFHYETADIAKIVNANIPV--FLKGGAGSGKNHIAE 137 (383)
T ss_pred HHHHHHHHHHHHHHhcCCCE--EEECCCCCCHHHHHH
Confidence 33333334444444456654 559999999997663
No 149
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=60.26 E-value=4.6 Score=39.38 Aligned_cols=27 Identities=30% Similarity=0.541 Sum_probs=19.9
Q ss_pred HHHHHhcCcceEEEeeccCCCCceeeec
Q psy4062 159 IIASLLEGYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 159 lV~~vl~G~N~tI~aYGqTGSGKTyTm~ 186 (409)
+++.++.. +--++-.|++|||||-++.
T Consensus 25 ll~~l~~~-~~pvLl~G~~GtGKT~li~ 51 (272)
T PF12775_consen 25 LLDLLLSN-GRPVLLVGPSGTGKTSLIQ 51 (272)
T ss_dssp HHHHHHHC-TEEEEEESSTTSSHHHHHH
T ss_pred HHHHHHHc-CCcEEEECCCCCchhHHHH
Confidence 44455543 5567999999999998874
No 150
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=60.17 E-value=5.6 Score=41.74 Aligned_cols=28 Identities=29% Similarity=0.389 Sum_probs=19.7
Q ss_pred hHHHHHHHhcCcceEEEeeccCCCCceeee
Q psy4062 156 TKDIIASLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 156 ~~plV~~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
...++..+..|-|. +-||++|+|||+..
T Consensus 184 le~l~~~L~~~~~i--il~GppGtGKT~lA 211 (459)
T PRK11331 184 IETILKRLTIKKNI--ILQGPPGVGKTFVA 211 (459)
T ss_pred HHHHHHHHhcCCCE--EEECCCCCCHHHHH
Confidence 34455555566554 55999999999875
No 151
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=59.73 E-value=3.8 Score=47.79 Aligned_cols=30 Identities=30% Similarity=0.433 Sum_probs=20.6
Q ss_pred HHHHHHHhcCcceEEEeeccCCCCceeeecC
Q psy4062 157 KDIIASLLEGYNCSVFVYGATGAGKTHTMLG 187 (409)
Q Consensus 157 ~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G 187 (409)
..+++++-+|....+ ..-+||||||+||.+
T Consensus 423 ~ai~~a~~~g~r~~L-l~maTGSGKT~tai~ 452 (1123)
T PRK11448 423 QAVEKAIVEGQREIL-LAMATGTGKTRTAIA 452 (1123)
T ss_pred HHHHHHHHhccCCeE-EEeCCCCCHHHHHHH
Confidence 334455556766544 448999999999864
No 152
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=59.61 E-value=4 Score=40.92 Aligned_cols=17 Identities=35% Similarity=0.671 Sum_probs=14.4
Q ss_pred ceEEEeeccCCCCceee
Q psy4062 168 NCSVFVYGATGAGKTHT 184 (409)
Q Consensus 168 N~tI~aYGqTGSGKTyT 184 (409)
.+.|+..|+||||||+-
T Consensus 97 KSNILLiGPTGsGKTlL 113 (408)
T COG1219 97 KSNILLIGPTGSGKTLL 113 (408)
T ss_pred eccEEEECCCCCcHHHH
Confidence 35689999999999974
No 153
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=59.59 E-value=8.7 Score=42.88 Aligned_cols=31 Identities=35% Similarity=0.607 Sum_probs=25.9
Q ss_pred chHHHHHHHhcCcceEEEeeccCCCCceeeec
Q psy4062 155 STKDIIASLLEGYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 155 ~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~ 186 (409)
++.-+++++-+|.+-.+++. +||+|||+|-+
T Consensus 173 AI~rv~Eaf~~g~~raLlvM-ATGTGKTrTAi 203 (875)
T COG4096 173 AIRRVIEAFSKGQNRALLVM-ATGTGKTRTAI 203 (875)
T ss_pred HHHHHHHHHhcCCceEEEEE-ecCCCcceeHH
Confidence 35778888999999966665 79999999986
No 154
>KOG2543|consensus
Probab=59.43 E-value=3.2 Score=42.43 Aligned_cols=18 Identities=39% Similarity=0.652 Sum_probs=15.4
Q ss_pred eEEEeeccCCCCceeeec
Q psy4062 169 CSVFVYGATGAGKTHTML 186 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm~ 186 (409)
.-|+-||.+||||||++-
T Consensus 31 S~~~iyG~sgTGKT~~~r 48 (438)
T KOG2543|consen 31 SIVHIYGHSGTGKTYLVR 48 (438)
T ss_pred eeEEEeccCCCchhHHHH
Confidence 346899999999999984
No 155
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=59.22 E-value=3.8 Score=40.21 Aligned_cols=21 Identities=38% Similarity=0.787 Sum_probs=18.3
Q ss_pred cCcceEEEeeccCCCCceeee
Q psy4062 165 EGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 165 ~G~N~tI~aYGqTGSGKTyTm 185 (409)
.|++-+||..|++|+|||.-+
T Consensus 1 kg~~fnImVvG~sG~GKTTFI 21 (281)
T PF00735_consen 1 KGFNFNIMVVGESGLGKTTFI 21 (281)
T ss_dssp HEEEEEEEEEECTTSSHHHHH
T ss_pred CCceEEEEEECCCCCCHHHHH
Confidence 488899999999999998744
No 156
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=59.07 E-value=5.1 Score=40.61 Aligned_cols=41 Identities=24% Similarity=0.422 Sum_probs=26.1
Q ss_pred eeceEeCCCCCchhhhccchHHHHHHHhcC-cceEEEeeccCCCCceeee
Q psy4062 137 LFDRVYGPSESNQDVYDGSTKDIIASLLEG-YNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 137 ~FD~VF~~~asQ~eVf~~~~~plV~~vl~G-~N~tI~aYGqTGSGKTyTm 185 (409)
.||.|.+ |+.+- +.+...+-.| ..-.++-||+.|+|||.++
T Consensus 14 ~~~~iiG----q~~~~----~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla 55 (363)
T PRK14961 14 YFRDIIG----QKHIV----TAISNGLSLGRIHHAWLLSGTRGVGKTTIA 55 (363)
T ss_pred chhhccC----hHHHH----HHHHHHHHcCCCCeEEEEecCCCCCHHHHH
Confidence 3666665 34333 3333344444 3456899999999999866
No 157
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=59.03 E-value=2.2 Score=43.97 Aligned_cols=52 Identities=23% Similarity=0.401 Sum_probs=34.0
Q ss_pred eEeeceEeCCCCCchhhhccchHHHHH-HHhc--C--cceEEEeeccCCCCceeeec
Q psy4062 135 EFLFDRVYGPSESNQDVYDGSTKDIIA-SLLE--G--YNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 135 ~F~FD~VF~~~asQ~eVf~~~~~plV~-~vl~--G--~N~tI~aYGqTGSGKTyTm~ 186 (409)
...|+.|-+.+..-+++-+.+..|+.. .++. | ....|+-||+.|+|||+..-
T Consensus 141 ~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAk 197 (398)
T PTZ00454 141 DVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAK 197 (398)
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHH
Confidence 467888877655555555555455543 2333 2 34568999999999998863
No 158
>PHA02653 RNA helicase NPH-II; Provisional
Probab=58.94 E-value=7.3 Score=43.00 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=19.0
Q ss_pred HHHHHHhcCcceEEEeeccCCCCceee
Q psy4062 158 DIIASLLEGYNCSVFVYGATGAGKTHT 184 (409)
Q Consensus 158 plV~~vl~G~N~tI~aYGqTGSGKTyT 184 (409)
.++..+++|.+. +..|+||||||..
T Consensus 171 qil~~i~~gkdv--Iv~A~TGSGKTtq 195 (675)
T PHA02653 171 KIFEAWISRKPV--VLTGGTGVGKTSQ 195 (675)
T ss_pred HHHHHHHhCCCE--EEECCCCCCchhH
Confidence 345566677654 8999999999975
No 159
>PRK04195 replication factor C large subunit; Provisional
Probab=58.88 E-value=4.1 Score=43.01 Aligned_cols=30 Identities=33% Similarity=0.592 Sum_probs=21.8
Q ss_pred HHHHHHHhcCc-ceEEEeeccCCCCceeeec
Q psy4062 157 KDIIASLLEGY-NCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 157 ~plV~~vl~G~-N~tI~aYGqTGSGKTyTm~ 186 (409)
..++.....|. .-.++-||+.|+|||+...
T Consensus 27 ~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ 57 (482)
T PRK04195 27 REWIESWLKGKPKKALLLYGPPGVGKTSLAH 57 (482)
T ss_pred HHHHHHHhcCCCCCeEEEECCCCCCHHHHHH
Confidence 44455555554 5578899999999998873
No 160
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=58.87 E-value=3.8 Score=40.84 Aligned_cols=16 Identities=44% Similarity=0.769 Sum_probs=13.3
Q ss_pred EEeeccCCCCceeeec
Q psy4062 171 VFVYGATGAGKTHTML 186 (409)
Q Consensus 171 I~aYGqTGSGKTyTm~ 186 (409)
...||+|||||++-+-
T Consensus 90 ~~VYGPTG~GKSqLlR 105 (369)
T PF02456_consen 90 GVVYGPTGSGKSQLLR 105 (369)
T ss_pred EEEECCCCCCHHHHHH
Confidence 4559999999999774
No 161
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=58.54 E-value=5.6 Score=39.00 Aligned_cols=37 Identities=27% Similarity=0.467 Sum_probs=26.4
Q ss_pred ccchHHHHHHHhcCcceEEEeeccCCCCceeee------cCCCC
Q psy4062 153 DGSTKDIIASLLEGYNCSVFVYGATGAGKTHTM------LGNEN 190 (409)
Q Consensus 153 ~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm------~G~~~ 190 (409)
...+.||+ ..+.--+..+-.||+|++|||.++ +|+++
T Consensus 179 ~afa~pLL-~~l~~~~~~~hl~G~Ss~GKTt~~~~a~Sv~G~p~ 221 (286)
T PF06048_consen 179 AAFAAPLL-SLLGVEGFGFHLYGQSSSGKTTALQLAASVWGNPD 221 (286)
T ss_pred HHHHHHHH-HHhCCCceEEEEEeCCCCCHHHHHHHhhhhCcCch
Confidence 33455555 455566678888999999999877 46655
No 162
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=58.16 E-value=3.7 Score=41.53 Aligned_cols=52 Identities=23% Similarity=0.410 Sum_probs=29.9
Q ss_pred eEeeceEeCCCCCchhhhccchHHHHHH-Hhc--Cc--ceEEEeeccCCCCceeeec
Q psy4062 135 EFLFDRVYGPSESNQDVYDGSTKDIIAS-LLE--GY--NCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 135 ~F~FD~VF~~~asQ~eVf~~~~~plV~~-vl~--G~--N~tI~aYGqTGSGKTyTm~ 186 (409)
.+.||.+.+.+..-+++.+.+..|+... .+. |. ...|+-||++|+|||+.+-
T Consensus 118 ~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lak 174 (364)
T TIGR01242 118 NVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAK 174 (364)
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHH
Confidence 3566666665444344444333333321 121 21 3458999999999998874
No 163
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=58.15 E-value=5.8 Score=42.48 Aligned_cols=42 Identities=33% Similarity=0.491 Sum_probs=28.9
Q ss_pred EeeceEeCCCCCchhhhccchHHHHHHHhcCcceEEEeeccCCCCceeee
Q psy4062 136 FLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 136 F~FD~VF~~~asQ~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
-.|+.+++++. .++.+...+.......|+-||++|+|||+..
T Consensus 62 ~~f~~iiGqs~--------~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lA 103 (531)
T TIGR02902 62 KSFDEIIGQEE--------GIKALKAALCGPNPQHVIIYGPPGVGKTAAA 103 (531)
T ss_pred CCHHHeeCcHH--------HHHHHHHHHhCCCCceEEEECCCCCCHHHHH
Confidence 35777877532 2344444556666777888999999998765
No 164
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=57.73 E-value=6.5 Score=40.53 Aligned_cols=42 Identities=26% Similarity=0.453 Sum_probs=31.5
Q ss_pred eceEeCCCCCchhhhccchHHHHHHHhcCcceEEEeeccCCCCceee
Q psy4062 138 FDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHT 184 (409)
Q Consensus 138 FD~VF~~~asQ~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyT 184 (409)
||.|++ |+.+... ..|+-.-+-.|.-..++-||+.|+|||.-
T Consensus 23 lde~vG----Q~HLlg~-~~~lrr~v~~~~l~SmIl~GPPG~GKTTl 64 (436)
T COG2256 23 LDEVVG----QEHLLGE-GKPLRRAVEAGHLHSMILWGPPGTGKTTL 64 (436)
T ss_pred HHHhcC----hHhhhCC-CchHHHHHhcCCCceeEEECCCCCCHHHH
Confidence 666665 6777755 36665556678888899999999999964
No 165
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=57.53 E-value=5.5 Score=44.36 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=17.9
Q ss_pred cCcceEEEeeccCCCCceeeec
Q psy4062 165 EGYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 165 ~G~N~tI~aYGqTGSGKTyTm~ 186 (409)
.+.-..++-||++|+|||++..
T Consensus 49 ~~~~~slLL~GPpGtGKTTLA~ 70 (725)
T PRK13341 49 ADRVGSLILYGPPGVGKTTLAR 70 (725)
T ss_pred cCCCceEEEECCCCCCHHHHHH
Confidence 4555578889999999998874
No 166
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=56.56 E-value=3.8 Score=35.04 Aligned_cols=16 Identities=50% Similarity=0.931 Sum_probs=13.5
Q ss_pred EEeeccCCCCceeeec
Q psy4062 171 VFVYGATGAGKTHTML 186 (409)
Q Consensus 171 I~aYGqTGSGKTyTm~ 186 (409)
++-+|.+|+|||+.+.
T Consensus 2 ~~i~G~~G~GKT~l~~ 17 (165)
T cd01120 2 ILVFGPTGSGKTTLAL 17 (165)
T ss_pred eeEeCCCCCCHHHHHH
Confidence 4679999999999763
No 167
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=56.38 E-value=7.7 Score=36.15 Aligned_cols=27 Identities=33% Similarity=0.503 Sum_probs=20.6
Q ss_pred HHHHHHhc-C--cceEEEeeccCCCCceee
Q psy4062 158 DIIASLLE-G--YNCSVFVYGATGAGKTHT 184 (409)
Q Consensus 158 plV~~vl~-G--~N~tI~aYGqTGSGKTyT 184 (409)
+-+|.++. | .+..++.+|++|||||.-
T Consensus 6 ~~LD~~l~GGip~gs~~li~G~~GsGKT~l 35 (226)
T PF06745_consen 6 PGLDELLGGGIPKGSVVLISGPPGSGKTTL 35 (226)
T ss_dssp TTHHHHTTTSEETTSEEEEEESTTSSHHHH
T ss_pred hhHHHhhcCCCCCCcEEEEEeCCCCCcHHH
Confidence 34677774 4 378899999999999743
No 168
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=56.37 E-value=7.2 Score=36.63 Aligned_cols=31 Identities=19% Similarity=0.320 Sum_probs=24.0
Q ss_pred chHHHHHHHhcCc---ceEEEeeccCCCCceeee
Q psy4062 155 STKDIIASLLEGY---NCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 155 ~~~plV~~vl~G~---N~tI~aYGqTGSGKTyTm 185 (409)
++-+-+|.++.|- ..+++.+|.+|||||+-.
T Consensus 9 tGi~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~ 42 (234)
T PRK06067 9 TGNEELDRKLGGGIPFPSLILIEGDHGTGKSVLS 42 (234)
T ss_pred cCCHHHHHhhCCCCcCCcEEEEECCCCCChHHHH
Confidence 4566788888643 678888999999998754
No 169
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=55.84 E-value=8.2 Score=42.27 Aligned_cols=25 Identities=40% Similarity=0.601 Sum_probs=19.9
Q ss_pred HHHHHhcCcceEEEeeccCCCCceeee
Q psy4062 159 IIASLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 159 lV~~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
.+..+++|.+ +++.+|||||||.+.
T Consensus 36 ai~~ll~g~d--vl~~ApTGsGKT~af 60 (629)
T PRK11634 36 CIPHLLNGRD--VLGMAQTGSGKTAAF 60 (629)
T ss_pred HHHHHHcCCC--EEEEcCCCCcHHHHH
Confidence 4556778877 688889999999864
No 170
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=55.03 E-value=7.2 Score=43.09 Aligned_cols=36 Identities=28% Similarity=0.467 Sum_probs=26.6
Q ss_pred hhhhccchHHHHHHHh-cCcceEEEeeccCCCCceeee
Q psy4062 149 QDVYDGSTKDIIASLL-EGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 149 ~eVf~~~~~plV~~vl-~G~N~tI~aYGqTGSGKTyTm 185 (409)
-.||.- +......++ .|.|.||+.-|.+|||||.|.
T Consensus 73 PHifav-A~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 109 (677)
T smart00242 73 PHVFAI-ADNAYRNMLNDKENQSIIISGESGAGKTENT 109 (677)
T ss_pred CCHHHH-HHHHHHHHHhcCCCceEEEecCCCCcchHHH
Confidence 345653 344444444 589999999999999999987
No 171
>PF05729 NACHT: NACHT domain
Probab=54.76 E-value=4.9 Score=34.65 Aligned_cols=17 Identities=24% Similarity=0.595 Sum_probs=14.5
Q ss_pred EEEeeccCCCCceeeec
Q psy4062 170 SVFVYGATGAGKTHTML 186 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm~ 186 (409)
.++-+|..|+|||..|.
T Consensus 2 ~l~I~G~~G~GKStll~ 18 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLR 18 (166)
T ss_pred EEEEECCCCCChHHHHH
Confidence 46889999999999873
No 172
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=54.46 E-value=7.2 Score=42.17 Aligned_cols=25 Identities=32% Similarity=0.365 Sum_probs=19.7
Q ss_pred HHHHHhcCcceEEEeeccCCCCceeee
Q psy4062 159 IIASLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 159 lV~~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
.|..+++|.| |++..+||||||.+.
T Consensus 39 ~ip~~l~G~D--vi~~ApTGSGKTlaf 63 (572)
T PRK04537 39 TLPVALPGGD--VAGQAQTGTGKTLAF 63 (572)
T ss_pred HHHHHhCCCC--EEEEcCCCCcHHHHH
Confidence 4556889998 466789999999763
No 173
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=54.37 E-value=6.9 Score=38.90 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=19.6
Q ss_pred hcCcceEEEeeccCCCCceeeec
Q psy4062 164 LEGYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 164 l~G~N~tI~aYGqTGSGKTyTm~ 186 (409)
-..-+.-++-||+.|||||.+|.
T Consensus 19 ~~~~~~r~vL~G~~GsGKS~~L~ 41 (309)
T PF10236_consen 19 KSSKNNRYVLTGERGSGKSVLLA 41 (309)
T ss_pred ccCCceEEEEECCCCCCHHHHHH
Confidence 34667789999999999999985
No 174
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=54.18 E-value=14 Score=40.63 Aligned_cols=61 Identities=18% Similarity=0.343 Sum_probs=36.7
Q ss_pred hhhccchHHHHHHHh-cCcceEEEeeccCCCCceeeec---------CCCCCCchhhhhhhhhhHHHhhhhc
Q psy4062 150 DVYDGSTKDIIASLL-EGYNCSVFVYGATGAGKTHTML---------GNENHKGIMYLTMGIRNRVSALTRQ 211 (409)
Q Consensus 150 eVf~~~~~plV~~vl-~G~N~tI~aYGqTGSGKTyTm~---------G~~~~~GIi~~~~~~~~lf~~~~~~ 211 (409)
.+|. ++......++ .+.|-||+.-|.+|||||.|+- |......|-.+.+....+++.+...
T Consensus 68 Hifa-vA~~Ay~~m~~~~~~QsIiisGESGsGKTet~K~l~~yL~~~~~~~~~~i~~~il~snpiLEAFGNA 138 (653)
T cd01379 68 HIFA-IADAAYQSLVTYNQDQCIVISGESGSGKTESAHLLVQQLTVLGKANNRTLQEKILQVNSLVEAFGNA 138 (653)
T ss_pred cHHH-HHHHHHHHHHhcCCCceEEEecCCCCCchHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHhhcc
Confidence 4554 2333444444 4889999999999999999872 3333334444444443455554443
No 175
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=54.14 E-value=4.8 Score=38.13 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=17.9
Q ss_pred ceEEEeeccCCCCceeeecCCC
Q psy4062 168 NCSVFVYGATGAGKTHTMLGNE 189 (409)
Q Consensus 168 N~tI~aYGqTGSGKTyTm~G~~ 189 (409)
...++-||..|+|||+..-.-+
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~ 33 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLP 33 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcC
Confidence 3568999999999999886543
No 176
>KOG3859|consensus
Probab=54.13 E-value=8.5 Score=37.90 Aligned_cols=29 Identities=24% Similarity=0.587 Sum_probs=23.9
Q ss_pred HHHHHH-HhcCcceEEEeeccCCCCceeee
Q psy4062 157 KDIIAS-LLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 157 ~plV~~-vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
..||.. +-+||.-.|++.|.||.|||.-|
T Consensus 30 dQLV~ksv~~GF~FNilCvGETg~GKsTLm 59 (406)
T KOG3859|consen 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLM 59 (406)
T ss_pred HHHHHHHHhcCceEEEEEeccCCccHHHHH
Confidence 446654 56899999999999999998765
No 177
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=54.12 E-value=7.5 Score=38.50 Aligned_cols=29 Identities=24% Similarity=0.460 Sum_probs=21.4
Q ss_pred hHHHHHHHhcCcceEEEeeccCCCCceeee
Q psy4062 156 TKDIIASLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 156 ~~plV~~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
+.+++..++.+. ..++-.|.||||||..|
T Consensus 133 ~~~~l~~~v~~~-~~ili~G~tGsGKTTll 161 (308)
T TIGR02788 133 IKEFLRLAIASR-KNIIISGGTGSGKTTFL 161 (308)
T ss_pred HHHHHHHHhhCC-CEEEEECCCCCCHHHHH
Confidence 355666666544 46777899999999876
No 178
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=54.08 E-value=11 Score=38.44 Aligned_cols=43 Identities=21% Similarity=0.475 Sum_probs=25.8
Q ss_pred ec-eEeCCCCCchhhhccchHHHHHHHhcC---cceEEEeeccCCCCceeee
Q psy4062 138 FD-RVYGPSESNQDVYDGSTKDIIASLLEG---YNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 138 FD-~VF~~~asQ~eVf~~~~~plV~~vl~G---~N~tI~aYGqTGSGKTyTm 185 (409)
|| .||+. ++.-+.++. -+.....| .+..+.-.|+.|||||...
T Consensus 49 F~~~~~G~----~~~i~~lv~-~l~~~a~g~~~~r~il~L~GPPGsGKStla 95 (361)
T smart00763 49 FDHDFFGM----EEAIERFVN-YFKSAAQGLEERKQILYLLGPVGGGKSSLV 95 (361)
T ss_pred cchhccCc----HHHHHHHHH-HHHHHHhcCCCCCcEEEEECCCCCCHHHHH
Confidence 45 78874 444443333 22333343 4566788999999998543
No 179
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=53.96 E-value=9.7 Score=36.73 Aligned_cols=27 Identities=33% Similarity=0.530 Sum_probs=18.7
Q ss_pred HHHHHHHhcCcceEEEeeccCCCCceeee
Q psy4062 157 KDIIASLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 157 ~plV~~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
+.++..+..|.+ |+-+|++|+|||...
T Consensus 12 ~~~l~~l~~g~~--vLL~G~~GtGKT~lA 38 (262)
T TIGR02640 12 SRALRYLKSGYP--VHLRGPAGTGKTTLA 38 (262)
T ss_pred HHHHHHHhcCCe--EEEEcCCCCCHHHHH
Confidence 444444555654 456999999999875
No 180
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=53.92 E-value=7.4 Score=40.14 Aligned_cols=37 Identities=27% Similarity=0.469 Sum_probs=23.2
Q ss_pred hhhhccchHHHHHHHhcC----cceEEEeeccCCCCceeee
Q psy4062 149 QDVYDGSTKDIIASLLEG----YNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 149 ~eVf~~~~~plV~~vl~G----~N~tI~aYGqTGSGKTyTm 185 (409)
...|.+...-++.++.+- ...-|.-.|+||-|||.|+
T Consensus 180 ~~~~~~~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTl 220 (407)
T COG1419 180 LRYFSEKLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTL 220 (407)
T ss_pred hhhHHHHHHHHHHhhccccccccCcEEEEECCCCCcHHHHH
Confidence 334444444444444433 2556677999999999998
No 181
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=53.79 E-value=10 Score=39.82 Aligned_cols=26 Identities=38% Similarity=0.724 Sum_probs=19.8
Q ss_pred HHHHHHhcCcceEEEeeccCCCCceeee
Q psy4062 158 DIIASLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 158 plV~~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
..|..+++|.|+ ++..+||||||.+.
T Consensus 18 ~ai~~~l~g~dv--lv~apTGsGKTl~y 43 (470)
T TIGR00614 18 EVINAVLLGRDC--FVVMPTGGGKSLCY 43 (470)
T ss_pred HHHHHHHcCCCE--EEEcCCCCcHhHHH
Confidence 355678889975 56679999999753
No 182
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=53.57 E-value=10 Score=38.05 Aligned_cols=40 Identities=30% Similarity=0.453 Sum_probs=23.9
Q ss_pred CCCCchhhhcc-chHHHHHHHhcCcceEEEeeccCCCCceeee
Q psy4062 144 PSESNQDVYDG-STKDIIASLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 144 ~~asQ~eVf~~-~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
|..+..-+|+. +...++-.+.. +.-|+-.|.+|+|||...
T Consensus 41 p~~d~~y~f~~~~~~~vl~~l~~--~~~ilL~G~pGtGKTtla 81 (327)
T TIGR01650 41 PDIDPAYLFDKATTKAICAGFAY--DRRVMVQGYHGTGKSTHI 81 (327)
T ss_pred CCCCCCccCCHHHHHHHHHHHhc--CCcEEEEeCCCChHHHHH
Confidence 33333444442 23434444433 445899999999999776
No 183
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=53.56 E-value=7.3 Score=39.33 Aligned_cols=31 Identities=19% Similarity=0.439 Sum_probs=23.8
Q ss_pred chHHHHHHHhcCcceEEEeeccCCCCceeeec
Q psy4062 155 STKDIIASLLEGYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 155 ~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~ 186 (409)
....++..++.+. ..|+..|.||||||.+|.
T Consensus 166 ~~~~~L~~~v~~~-~~ili~G~tGsGKTTll~ 196 (340)
T TIGR03819 166 GVARLLRAIVAAR-LAFLISGGTGSGKTTLLS 196 (340)
T ss_pred HHHHHHHHHHhCC-CeEEEECCCCCCHHHHHH
Confidence 3456777777654 688999999999998763
No 184
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=53.37 E-value=11 Score=35.12 Aligned_cols=31 Identities=29% Similarity=0.498 Sum_probs=23.8
Q ss_pred chHHHHHHHhcCc---ceEEEeeccCCCCceeee
Q psy4062 155 STKDIIASLLEGY---NCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 155 ~~~plV~~vl~G~---N~tI~aYGqTGSGKTyTm 185 (409)
++-+-+|.++.|- ...++-+|.+|||||...
T Consensus 7 tGi~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 40 (225)
T PRK09361 7 TGCKMLDELLGGGFERGTITQIYGPPGSGKTNIC 40 (225)
T ss_pred CCcHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 4556788888643 456788999999998775
No 185
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=52.55 E-value=8 Score=42.44 Aligned_cols=28 Identities=25% Similarity=0.394 Sum_probs=19.7
Q ss_pred HHHHHhcCcceEEEeeccCCCCceeeecC
Q psy4062 159 IIASLLEGYNCSVFVYGATGAGKTHTMLG 187 (409)
Q Consensus 159 lV~~vl~G~N~tI~aYGqTGSGKTyTm~G 187 (409)
.|..++..- ..++..|+.|||||||+..
T Consensus 165 Av~~~l~~~-~~~lI~GpPGTGKT~t~~~ 192 (637)
T TIGR00376 165 AVSFALSSK-DLFLIHGPPGTGKTRTLVE 192 (637)
T ss_pred HHHHHhcCC-CeEEEEcCCCCCHHHHHHH
Confidence 344555432 3457899999999999963
No 186
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=52.39 E-value=9.7 Score=42.10 Aligned_cols=21 Identities=24% Similarity=0.286 Sum_probs=16.4
Q ss_pred CcceEEEeeccCCCCceeeec
Q psy4062 166 GYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 166 G~N~tI~aYGqTGSGKTyTm~ 186 (409)
+...-++..|+||||||....
T Consensus 280 ~~~~~~Ll~~~TGSGKT~va~ 300 (681)
T PRK10917 280 PKPMNRLLQGDVGSGKTVVAA 300 (681)
T ss_pred cCCceEEEECCCCCcHHHHHH
Confidence 344568999999999998653
No 187
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=52.29 E-value=7.9 Score=39.37 Aligned_cols=16 Identities=31% Similarity=0.549 Sum_probs=14.1
Q ss_pred EEeeccCCCCceeeec
Q psy4062 171 VFVYGATGAGKTHTML 186 (409)
Q Consensus 171 I~aYGqTGSGKTyTm~ 186 (409)
++..|.||||||.++.
T Consensus 2 ~lv~g~tGsGKt~~~v 17 (384)
T cd01126 2 VLVFAPTRSGKGVGFV 17 (384)
T ss_pred eeEecCCCCCCccEEE
Confidence 5789999999999874
No 188
>KOG0335|consensus
Probab=52.27 E-value=6.5 Score=41.36 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=19.1
Q ss_pred HHhcCcceEEEeeccCCCCceeeecC
Q psy4062 162 SLLEGYNCSVFVYGATGAGKTHTMLG 187 (409)
Q Consensus 162 ~vl~G~N~tI~aYGqTGSGKTyTm~G 187 (409)
.+.+|.+. +|++|||||||+...+
T Consensus 107 ~i~~Grdl--~acAqTGsGKT~aFLi 130 (482)
T KOG0335|consen 107 IISGGRDL--MACAQTGSGKTAAFLI 130 (482)
T ss_pred eeecCCce--EEEccCCCcchHHHHH
Confidence 34566654 9999999999999875
No 189
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=51.99 E-value=5.1 Score=30.22 Aligned_cols=15 Identities=27% Similarity=0.685 Sum_probs=12.6
Q ss_pred EEeeccCCCCceeee
Q psy4062 171 VFVYGATGAGKTHTM 185 (409)
Q Consensus 171 I~aYGqTGSGKTyTm 185 (409)
.+-.|++|||||.-|
T Consensus 26 tli~G~nGsGKSTll 40 (62)
T PF13555_consen 26 TLITGPNGSGKSTLL 40 (62)
T ss_pred EEEECCCCCCHHHHH
Confidence 577899999999765
No 190
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=51.95 E-value=8.3 Score=38.57 Aligned_cols=18 Identities=39% Similarity=0.595 Sum_probs=15.1
Q ss_pred eEEEeeccCCCCceeeec
Q psy4062 169 CSVFVYGATGAGKTHTML 186 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm~ 186 (409)
..|.-.|++|+|||.|+.
T Consensus 115 ~vi~lvGpnGsGKTTt~~ 132 (318)
T PRK10416 115 FVILVVGVNGVGKTTTIG 132 (318)
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 466778999999999984
No 191
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=51.79 E-value=8.8 Score=38.18 Aligned_cols=40 Identities=25% Similarity=0.269 Sum_probs=23.6
Q ss_pred CCchhhhccchHHHHHHHhc--CcceEEEeeccCCCCceeeec
Q psy4062 146 ESNQDVYDGSTKDIIASLLE--GYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 146 asQ~eVf~~~~~plV~~vl~--G~N~tI~aYGqTGSGKTyTm~ 186 (409)
..|+++-+. +..++..... +....++-||++|+|||+.+.
T Consensus 28 vG~~~~~~~-l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 28 IGQEKVKEN-LKIFIEAAKKRGEALDHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred cCcHHHHHH-HHHHHHHHHhcCCCCCcEEEECCCCccHHHHHH
Confidence 345554443 2334443322 223457889999999998874
No 192
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=51.35 E-value=7.5 Score=42.81 Aligned_cols=47 Identities=26% Similarity=0.486 Sum_probs=32.0
Q ss_pred EeeceEeCCCCCchhhhccchHHHHHHHhcCcceEEEeeccCCCCceeeecC
Q psy4062 136 FLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLG 187 (409)
Q Consensus 136 F~FD~VF~~~asQ~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G 187 (409)
|....=|.|.-.|..-++ .+++.+-+|...- ..+|.|||||||||..
T Consensus 2 f~~~~~~~~~~~Q~~ai~----~l~~~~~~~~~~~-~l~Gvtgs~kt~~~a~ 48 (655)
T TIGR00631 2 FKLHSPFQPAGDQPKAIA----KLVEGLTDGEKHQ-TLLGVTGSGKTFTMAN 48 (655)
T ss_pred ceeccCCCCChHHHHHHH----HHHHhhhcCCCcE-EEECCCCcHHHHHHHH
Confidence 334445677888887665 3555666664222 3789999999999965
No 193
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=51.34 E-value=5.8 Score=41.32 Aligned_cols=18 Identities=44% Similarity=0.575 Sum_probs=14.9
Q ss_pred eEEEeeccCCCCceeeec
Q psy4062 169 CSVFVYGATGAGKTHTML 186 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm~ 186 (409)
..++-.|+||+|||+|+.
T Consensus 222 ~~i~~vGptGvGKTTt~~ 239 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLA 239 (424)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 356777999999999974
No 194
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=51.29 E-value=11 Score=41.70 Aligned_cols=35 Identities=31% Similarity=0.533 Sum_probs=27.0
Q ss_pred hhhccchHHHHHHHh-cCcceEEEeeccCCCCceeee
Q psy4062 150 DVYDGSTKDIIASLL-EGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 150 eVf~~~~~plV~~vl-~G~N~tI~aYGqTGSGKTyTm 185 (409)
.||. ++.....+++ .|.|.||+.-|.+|||||.|.
T Consensus 74 Hifa-iA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 109 (677)
T cd01383 74 HVYA-IADTAYNEMMRDEVNQSIIISGESGAGKTETA 109 (677)
T ss_pred CHHH-HHHHHHHHHHHcCCCceEEEecCCCCCcchHH
Confidence 5665 3344555555 589999999999999999986
No 195
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=51.10 E-value=12 Score=37.82 Aligned_cols=27 Identities=30% Similarity=0.288 Sum_probs=21.8
Q ss_pred HHHHHhcCcceEEEeeccCCCCceeee
Q psy4062 159 IIASLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 159 lV~~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
..+.+.+|-+..++...+||||||...
T Consensus 5 ~~~~~~~~~~~~~~i~apTGsGKT~~~ 31 (357)
T TIGR03158 5 TFEALQSKDADIIFNTAPTGAGKTLAW 31 (357)
T ss_pred HHHHHHcCCCCEEEEECCCCCCHHHHH
Confidence 345677888878888999999999874
No 196
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=51.03 E-value=12 Score=34.55 Aligned_cols=32 Identities=28% Similarity=0.460 Sum_probs=24.0
Q ss_pred chHHHHHHHhc-Cc--ceEEEeeccCCCCceeeec
Q psy4062 155 STKDIIASLLE-GY--NCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 155 ~~~plV~~vl~-G~--N~tI~aYGqTGSGKTyTm~ 186 (409)
++-+-+|.++. |+ ...+.-+|++|+|||..+.
T Consensus 3 tG~~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~ 37 (226)
T cd01393 3 TGSKALDELLGGGIPTGRITEIFGEFGSGKTQLCL 37 (226)
T ss_pred CCcHHHHHHhCCCCcCCcEEEEeCCCCCChhHHHH
Confidence 34567888886 43 4567779999999998763
No 197
>KOG0086|consensus
Probab=50.99 E-value=95 Score=28.00 Aligned_cols=17 Identities=53% Similarity=0.630 Sum_probs=14.3
Q ss_pred EEeEEEEeecCCccccc
Q psy4062 251 KMVKLSMIDLAGSERAA 267 (409)
Q Consensus 251 ~~skL~~VDLAGSEr~~ 267 (409)
+.-||.+.|.||-||..
T Consensus 56 K~vKLQIWDTAGQErFR 72 (214)
T KOG0086|consen 56 KTVKLQIWDTAGQERFR 72 (214)
T ss_pred cEEEEEEeecccHHHHH
Confidence 46689999999999854
No 198
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=50.86 E-value=6.7 Score=41.84 Aligned_cols=42 Identities=21% Similarity=0.525 Sum_probs=30.0
Q ss_pred ceeEeeceEeCCCCCchhhhccchHHHHH--HHhcCcceEEEeeccCCCCce
Q psy4062 133 EMEFLFDRVYGPSESNQDVYDGSTKDIIA--SLLEGYNCSVFVYGATGAGKT 182 (409)
Q Consensus 133 ~~~F~FD~VF~~~asQ~eVf~~~~~plV~--~vl~G~N~tI~aYGqTGSGKT 182 (409)
...|+||.+.+.+.. ...++. .-..+.+++|+-+|.||+||-
T Consensus 239 ~a~y~f~~Iig~S~~--------m~~~~~~akr~A~tdstVLi~GESGTGKE 282 (560)
T COG3829 239 KAKYTFDDIIGESPA--------MLRVLELAKRIAKTDSTVLILGESGTGKE 282 (560)
T ss_pred ccccchhhhccCCHH--------HHHHHHHHHhhcCCCCcEEEecCCCccHH
Confidence 446899999886432 222222 235789999999999999995
No 199
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=50.84 E-value=13 Score=39.66 Aligned_cols=24 Identities=38% Similarity=0.538 Sum_probs=18.8
Q ss_pred HHHHHhcCcceEEEeeccCCCCceee
Q psy4062 159 IIASLLEGYNCSVFVYGATGAGKTHT 184 (409)
Q Consensus 159 lV~~vl~G~N~tI~aYGqTGSGKTyT 184 (409)
.+..+++|.|. ++..+||||||..
T Consensus 151 aip~il~g~dv--iv~ApTGSGKTla 174 (518)
T PLN00206 151 AIPAALSGRSL--LVSADTGSGKTAS 174 (518)
T ss_pred HHHHHhcCCCE--EEEecCCCCccHH
Confidence 45667888874 7777999999965
No 200
>KOG0354|consensus
Probab=50.79 E-value=12 Score=41.45 Aligned_cols=26 Identities=31% Similarity=0.549 Sum_probs=21.1
Q ss_pred HHHHHHHhcCcceEEEeeccCCCCceeee
Q psy4062 157 KDIIASLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 157 ~plV~~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
..+++.+| |.|+.|.+ +||+|||+.-
T Consensus 68 ~eivq~AL-gkNtii~l--PTG~GKTfIA 93 (746)
T KOG0354|consen 68 EELVQPAL-GKNTIIAL--PTGSGKTFIA 93 (746)
T ss_pred HHHhHHhh-cCCeEEEe--ecCCCccchH
Confidence 45788899 99986655 9999999864
No 201
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=50.54 E-value=6.8 Score=33.82 Aligned_cols=15 Identities=33% Similarity=0.662 Sum_probs=12.7
Q ss_pred EEeeccCCCCceeee
Q psy4062 171 VFVYGATGAGKTHTM 185 (409)
Q Consensus 171 I~aYGqTGSGKTyTm 185 (409)
|+..|..|||||+.-
T Consensus 2 i~l~G~~GsGKST~a 16 (150)
T cd02021 2 IVVMGVSGSGKSTVG 16 (150)
T ss_pred EEEEcCCCCCHHHHH
Confidence 677899999998764
No 202
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=50.31 E-value=11 Score=41.74 Aligned_cols=35 Identities=34% Similarity=0.565 Sum_probs=25.9
Q ss_pred hhhccchHHHHHHHh-cCcceEEEeeccCCCCceeee
Q psy4062 150 DVYDGSTKDIIASLL-EGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 150 eVf~~~~~plV~~vl-~G~N~tI~aYGqTGSGKTyTm 185 (409)
.||. ++.....+++ .|.|.||+.-|.+|||||.|.
T Consensus 70 Hifa-iA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 105 (674)
T cd01384 70 HVFA-IADAAYRAMINEGKSQSILVSGESGAGKTETT 105 (674)
T ss_pred CHHH-HHHHHHHHHHHcCCCceEEEECCCCCCchhHH
Confidence 3554 3344444444 589999999999999999987
No 203
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=50.28 E-value=11 Score=41.66 Aligned_cols=35 Identities=26% Similarity=0.429 Sum_probs=26.7
Q ss_pred hhhccchHHHHHHHh-cCcceEEEeeccCCCCceeee
Q psy4062 150 DVYDGSTKDIIASLL-EGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 150 eVf~~~~~plV~~vl-~G~N~tI~aYGqTGSGKTyTm 185 (409)
.||. ++......++ .|.|-||+.-|.+|||||.|.
T Consensus 69 Hifa-vA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 104 (677)
T cd01387 69 HLFA-IANLAFAKMLDAKQNQCVIISGESGSGKTEAT 104 (677)
T ss_pred CHHH-HHHHHHHHHHhcCCCceEEEEcCCCCCeehHH
Confidence 4565 3344455554 689999999999999999987
No 204
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=50.24 E-value=12 Score=41.44 Aligned_cols=35 Identities=23% Similarity=0.475 Sum_probs=26.3
Q ss_pred hhhccchHHHHHHHh-cCcceEEEeeccCCCCceeee
Q psy4062 150 DVYDGSTKDIIASLL-EGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 150 eVf~~~~~plV~~vl-~G~N~tI~aYGqTGSGKTyTm 185 (409)
.||. ++.....+++ .|.|.||+.-|.+|||||.|.
T Consensus 68 Hifa-vA~~Ay~~m~~~~~~QsIiisGESGaGKTes~ 103 (671)
T cd01381 68 HIFA-ISDNAYTNMQREKKNQCIIISGESGAGKTEST 103 (671)
T ss_pred CHHH-HHHHHHHHHHHcCCCceEEEEcCCCCCeehHH
Confidence 4554 3344444544 589999999999999999987
No 205
>PF13173 AAA_14: AAA domain
Probab=50.19 E-value=6.1 Score=33.46 Aligned_cols=17 Identities=29% Similarity=0.530 Sum_probs=14.8
Q ss_pred EEEeeccCCCCceeeec
Q psy4062 170 SVFVYGATGAGKTHTML 186 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm~ 186 (409)
.++-+|+.|+|||+.|.
T Consensus 4 ~~~l~G~R~vGKTtll~ 20 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLK 20 (128)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 57889999999999873
No 206
>PRK00131 aroK shikimate kinase; Reviewed
Probab=50.18 E-value=7.6 Score=34.02 Aligned_cols=17 Identities=29% Similarity=0.426 Sum_probs=14.7
Q ss_pred eEEEeeccCCCCceeee
Q psy4062 169 CSVFVYGATGAGKTHTM 185 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm 185 (409)
-.|+.+|..|||||+.-
T Consensus 5 ~~i~l~G~~GsGKstla 21 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIG 21 (175)
T ss_pred CeEEEEcCCCCCHHHHH
Confidence 36899999999999874
No 207
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=50.07 E-value=7.5 Score=39.57 Aligned_cols=47 Identities=28% Similarity=0.490 Sum_probs=31.0
Q ss_pred eeceEeCCCCCchhhhccchHHHHHH-Hhc--Ccc--eEEEeeccCCCCcee
Q psy4062 137 LFDRVYGPSESNQDVYDGSTKDIIAS-LLE--GYN--CSVFVYGATGAGKTH 183 (409)
Q Consensus 137 ~FD~VF~~~asQ~eVf~~~~~plV~~-vl~--G~N--~tI~aYGqTGSGKTy 183 (409)
+|+.|=+-+..-++|.+.+-.||.+- +|+ |.. -.|+-||+.|+|||-
T Consensus 149 tY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTL 200 (406)
T COG1222 149 TYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTL 200 (406)
T ss_pred ChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHH
Confidence 45555554444567777776676653 332 543 458999999999974
No 208
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=49.80 E-value=11 Score=39.49 Aligned_cols=26 Identities=27% Similarity=0.411 Sum_probs=19.8
Q ss_pred HHHHHHhcCcceEEEeeccCCCCceeee
Q psy4062 158 DIIASLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 158 plV~~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
..+..+++|.|.. ...+||||||.+.
T Consensus 116 ~ai~~~~~G~dvi--~~apTGSGKTlay 141 (475)
T PRK01297 116 QVLGYTLAGHDAI--GRAQTGTGKTAAF 141 (475)
T ss_pred HHHHHHhCCCCEE--EECCCCChHHHHH
Confidence 4566788999864 4559999999664
No 209
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=49.51 E-value=11 Score=41.81 Aligned_cols=36 Identities=28% Similarity=0.478 Sum_probs=27.5
Q ss_pred hhhhccchHHHHHHHh-cCcceEEEeeccCCCCceeee
Q psy4062 149 QDVYDGSTKDIIASLL-EGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 149 ~eVf~~~~~plV~~vl-~G~N~tI~aYGqTGSGKTyTm 185 (409)
-.||. ++.....+++ .|.|.||+.-|.+|||||.+.
T Consensus 67 PHifa-vA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 103 (679)
T cd00124 67 PHVFA-IADRAYRNMLRDRRNQSIIISGESGAGKTENT 103 (679)
T ss_pred CCHHH-HHHHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence 34555 3455555655 489999999999999999987
No 210
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=49.32 E-value=7.3 Score=38.01 Aligned_cols=21 Identities=29% Similarity=0.722 Sum_probs=18.8
Q ss_pred cCcceEEEeeccCCCCceeee
Q psy4062 165 EGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 165 ~G~N~tI~aYGqTGSGKTyTm 185 (409)
.|+...|+..|++|+|||..+
T Consensus 1 ~g~~f~I~vvG~sg~GKSTli 21 (276)
T cd01850 1 KGFQFNIMVVGESGLGKSTFI 21 (276)
T ss_pred CCcEEEEEEEcCCCCCHHHHH
Confidence 488999999999999999765
No 211
>CHL00181 cbbX CbbX; Provisional
Probab=49.25 E-value=7.2 Score=38.34 Aligned_cols=15 Identities=33% Similarity=0.519 Sum_probs=13.4
Q ss_pred EEeeccCCCCceeee
Q psy4062 171 VFVYGATGAGKTHTM 185 (409)
Q Consensus 171 I~aYGqTGSGKTyTm 185 (409)
|+-||++|+|||+..
T Consensus 62 ill~G~pGtGKT~lA 76 (287)
T CHL00181 62 MSFTGSPGTGKTTVA 76 (287)
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999875
No 212
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=48.89 E-value=11 Score=41.75 Aligned_cols=35 Identities=20% Similarity=0.411 Sum_probs=26.1
Q ss_pred hhhccchHHHHHHHh-cCcceEEEeeccCCCCceeee
Q psy4062 150 DVYDGSTKDIIASLL-EGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 150 eVf~~~~~plV~~vl-~G~N~tI~aYGqTGSGKTyTm 185 (409)
.||. ++......++ .|.|-||+.-|.+|||||.|.
T Consensus 76 Hiy~-iA~~Ay~~m~~~~~~QsIiisGESGAGKTet~ 111 (692)
T cd01385 76 HIFA-IADVAYYNMLRKKVNQCIVISGESGSGKTEST 111 (692)
T ss_pred CHHH-HHHHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence 4554 3344444544 588999999999999999987
No 213
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=48.70 E-value=11 Score=41.84 Aligned_cols=36 Identities=28% Similarity=0.511 Sum_probs=27.2
Q ss_pred hhhhccchHHHHHHHh-cCcceEEEeeccCCCCceeee
Q psy4062 149 QDVYDGSTKDIIASLL-EGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 149 ~eVf~~~~~plV~~vl-~G~N~tI~aYGqTGSGKTyTm 185 (409)
-.||. ++.....+++ .|.|.||+.-|.+|||||.+.
T Consensus 72 PHiya-iA~~Ay~~m~~~~~~QsIiiSGESGAGKTes~ 108 (693)
T cd01377 72 PHIFA-IADNAYRSMLQDRENQSILITGESGAGKTENT 108 (693)
T ss_pred CCHHH-HHHHHHHHHHhcCCCceEEEEcCCCCCchHHH
Confidence 34665 3344555554 589999999999999999986
No 214
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=48.70 E-value=14 Score=34.86 Aligned_cols=28 Identities=25% Similarity=0.399 Sum_probs=21.5
Q ss_pred hHHHHHHHhc-Cc--ceEEEeeccCCCCcee
Q psy4062 156 TKDIIASLLE-GY--NCSVFVYGATGAGKTH 183 (409)
Q Consensus 156 ~~plV~~vl~-G~--N~tI~aYGqTGSGKTy 183 (409)
+-+-+|.++. |+ ..+++.+|.+|||||-
T Consensus 6 Gi~~LD~~l~GG~~~gs~~lI~G~pGsGKT~ 36 (237)
T TIGR03877 6 GIPGMDEILHGGIPERNVVLLSGGPGTGKSI 36 (237)
T ss_pred CcHhHHHHhcCCCcCCeEEEEEcCCCCCHHH
Confidence 3455778776 44 5788999999999985
No 215
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=48.64 E-value=12 Score=41.30 Aligned_cols=35 Identities=31% Similarity=0.488 Sum_probs=26.3
Q ss_pred hhhccchHHHHHHHh-cCcceEEEeeccCCCCceeee
Q psy4062 150 DVYDGSTKDIIASLL-EGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 150 eVf~~~~~plV~~vl-~G~N~tI~aYGqTGSGKTyTm 185 (409)
.||. ++.....+++ .|.|.||+.-|.+|||||.|.
T Consensus 68 Hifa-iA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 103 (674)
T cd01378 68 HIYA-LADNAYRSMKSENENQCVIISGESGAGKTEAA 103 (674)
T ss_pred CHHH-HHHHHHHHHHHcCCCceEEEEcCCCCCcchHH
Confidence 4554 3344444544 589999999999999999987
No 216
>PRK10865 protein disaggregation chaperone; Provisional
Probab=48.41 E-value=12 Score=42.60 Aligned_cols=17 Identities=41% Similarity=0.569 Sum_probs=15.2
Q ss_pred eEEEeeccCCCCceeee
Q psy4062 169 CSVFVYGATGAGKTHTM 185 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm 185 (409)
+.++-+|++|+|||++.
T Consensus 599 ~~~Lf~Gp~G~GKT~lA 615 (857)
T PRK10865 599 GSFLFLGPTGVGKTELC 615 (857)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 57888999999999986
No 217
>PRK05580 primosome assembly protein PriA; Validated
Probab=48.00 E-value=12 Score=41.50 Aligned_cols=18 Identities=39% Similarity=0.648 Sum_probs=15.0
Q ss_pred eEEEeeccCCCCceeeec
Q psy4062 169 CSVFVYGATGAGKTHTML 186 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm~ 186 (409)
..++.+|+||||||...+
T Consensus 163 ~~~Ll~~~TGSGKT~v~l 180 (679)
T PRK05580 163 SPFLLDGVTGSGKTEVYL 180 (679)
T ss_pred CcEEEECCCCChHHHHHH
Confidence 448999999999997764
No 218
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=47.96 E-value=16 Score=33.69 Aligned_cols=31 Identities=32% Similarity=0.476 Sum_probs=23.0
Q ss_pred hHHHHHHHhc-Cc--ceEEEeeccCCCCceeeec
Q psy4062 156 TKDIIASLLE-GY--NCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 156 ~~plV~~vl~-G~--N~tI~aYGqTGSGKTyTm~ 186 (409)
+-+-+|.++. |+ ...+..+|.+|||||....
T Consensus 4 Gi~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~ 37 (218)
T cd01394 4 GCKGLDELLGGGVERGTVTQVYGPPGTGKTNIAI 37 (218)
T ss_pred chhHHHHHhcCCccCCeEEEEECCCCCCHHHHHH
Confidence 3456788886 54 3557889999999998753
No 219
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=47.96 E-value=6.4 Score=41.68 Aligned_cols=51 Identities=22% Similarity=0.335 Sum_probs=28.6
Q ss_pred eEeeceEeCCCCCchhhhccchHHHHHH-Hhc--C--cceEEEeeccCCCCceeeec
Q psy4062 135 EFLFDRVYGPSESNQDVYDGSTKDIIAS-LLE--G--YNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 135 ~F~FD~VF~~~asQ~eVf~~~~~plV~~-vl~--G--~N~tI~aYGqTGSGKTyTm~ 186 (409)
...||.|.+.+...+++-+ ++..+-.. .+. | ..-.++-||+.|||||+..-
T Consensus 51 ~~~~~di~g~~~~k~~l~~-~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~ 106 (495)
T TIGR01241 51 KVTFKDVAGIDEAKEELME-IVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAK 106 (495)
T ss_pred CCCHHHhCCHHHHHHHHHH-HHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHH
Confidence 3568888775444444332 22221100 111 2 23358899999999999874
No 220
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=47.93 E-value=13 Score=40.46 Aligned_cols=25 Identities=40% Similarity=0.687 Sum_probs=18.7
Q ss_pred HHHHHHhcCcceEEEeeccCCCCceee
Q psy4062 158 DIIASLLEGYNCSVFVYGATGAGKTHT 184 (409)
Q Consensus 158 plV~~vl~G~N~tI~aYGqTGSGKTyT 184 (409)
.++..+++|.|+. +.++||||||.+
T Consensus 32 ~ai~~il~g~dvl--v~apTGsGKTl~ 56 (607)
T PRK11057 32 EIIDAVLSGRDCL--VVMPTGGGKSLC 56 (607)
T ss_pred HHHHHHHcCCCEE--EEcCCCchHHHH
Confidence 3455678898874 457999999975
No 221
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=47.84 E-value=11 Score=41.89 Aligned_cols=35 Identities=26% Similarity=0.377 Sum_probs=26.4
Q ss_pred hhhccchHHHHHHHh-cCcceEEEeeccCCCCceeee
Q psy4062 150 DVYDGSTKDIIASLL-EGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 150 eVf~~~~~plV~~vl-~G~N~tI~aYGqTGSGKTyTm 185 (409)
.||. ++.....+++ .|.|.||+.-|.+|||||.|.
T Consensus 73 Hifa-iA~~Ay~~m~~~~~~QsIiisGESGaGKTes~ 108 (717)
T cd01382 73 HVFA-IADKAYRDMKVLKMSQSIIVSGESGAGKTENT 108 (717)
T ss_pred cHHH-HHHHHHHHHHhcCCCCeEEEecCCCCChhHHH
Confidence 3554 3344455544 689999999999999999987
No 222
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=47.37 E-value=6.6 Score=40.54 Aligned_cols=17 Identities=35% Similarity=0.700 Sum_probs=14.8
Q ss_pred eEEEeeccCCCCceeee
Q psy4062 169 CSVFVYGATGAGKTHTM 185 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm 185 (409)
--++.+|.||||||..|
T Consensus 43 ~h~~i~g~tGsGKt~~i 59 (410)
T cd01127 43 AHTMIIGTTGTGKTTQI 59 (410)
T ss_pred ccEEEEcCCCCCHHHHH
Confidence 45799999999999876
No 223
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=47.26 E-value=7.4 Score=34.71 Aligned_cols=18 Identities=28% Similarity=0.560 Sum_probs=15.0
Q ss_pred eEEEeeccCCCCceeeec
Q psy4062 169 CSVFVYGATGAGKTHTML 186 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm~ 186 (409)
+..+-||.+|+|||..|.
T Consensus 20 g~~vi~G~Ng~GKStil~ 37 (202)
T PF13476_consen 20 GLNVIYGPNGSGKSTILE 37 (202)
T ss_dssp EEEEEEESTTSSHHHHHH
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 456789999999998873
No 224
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=47.20 E-value=6.8 Score=41.82 Aligned_cols=45 Identities=24% Similarity=0.292 Sum_probs=30.0
Q ss_pred eEeeceEeCCCCCchhhhccchHHHHHHHhcCcceEEEeeccCCCCceeee
Q psy4062 135 EFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 135 ~F~FD~VF~~~asQ~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
.+.||.+.+.+..=.++.+. +.. +...+..|+-+|.+||||++.-
T Consensus 192 ~~~~~~liG~s~~~~~~~~~-----~~~-~a~~~~pvli~Ge~GtGK~~lA 236 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQ-----ARV-VARSNSTVLLRGESGTGKELIA 236 (534)
T ss_pred cCccCceEECCHHHHHHHHH-----HHH-HhCcCCCEEEECCCCccHHHHH
Confidence 47888888864432333322 222 2357888999999999999875
No 225
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=47.08 E-value=7.1 Score=38.10 Aligned_cols=36 Identities=19% Similarity=0.258 Sum_probs=24.2
Q ss_pred CCccEEEEEEeCCCCCCHHHHHHHHHHHHHHhcCcccceeeccC
Q psy4062 320 GNCKTVMIANIAPTALSYEDSYNTLKYATRAKKIKAKVSRTFKS 363 (409)
Q Consensus 320 Gn~~t~~I~~isP~~~~~~eTl~TL~fa~rak~Ik~~~~~n~~~ 363 (409)
.-++|++++| .+.+|. +++|+|.--++....+-...
T Consensus 184 ~l~kTivfVT-----HDidEA---~kLadri~vm~~G~i~Q~~~ 219 (309)
T COG1125 184 ELGKTIVFVT-----HDIDEA---LKLADRIAVMDAGEIVQYDT 219 (309)
T ss_pred HhCCEEEEEe-----cCHHHH---HhhhceEEEecCCeEEEeCC
Confidence 3468888886 466665 58899988777655444433
No 226
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=47.07 E-value=12 Score=38.10 Aligned_cols=20 Identities=35% Similarity=0.672 Sum_probs=18.3
Q ss_pred cCcceEEEeeccCCCCceee
Q psy4062 165 EGYNCSVFVYGATGAGKTHT 184 (409)
Q Consensus 165 ~G~N~tI~aYGqTGSGKTyT 184 (409)
.|+.-+||+.|+.|+|||.-
T Consensus 20 ~Gi~f~im~~G~sG~GKttf 39 (373)
T COG5019 20 KGIDFTIMVVGESGLGKTTF 39 (373)
T ss_pred cCCceEEEEecCCCCchhHH
Confidence 59999999999999999863
No 227
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=47.02 E-value=9.1 Score=38.62 Aligned_cols=44 Identities=20% Similarity=0.439 Sum_probs=31.0
Q ss_pred EeeceEeCCCCCchhhhccchHHHHHHHhcCcceEEEeeccCCCCceeeecC
Q psy4062 136 FLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLG 187 (409)
Q Consensus 136 F~FD~VF~~~asQ~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G 187 (409)
|.|..|.+ |++ ...-++-.+++..-+-++-.|.+|+|||..+-+
T Consensus 1 ~pf~~ivg----q~~----~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~ 44 (337)
T TIGR02030 1 FPFTAIVG----QDE----MKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRA 44 (337)
T ss_pred CCcccccc----HHH----HHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHH
Confidence 44666655 333 345566677786667789999999999988753
No 228
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=46.83 E-value=8.6 Score=34.35 Aligned_cols=15 Identities=47% Similarity=0.804 Sum_probs=13.0
Q ss_pred EEeeccCCCCceeee
Q psy4062 171 VFVYGATGAGKTHTM 185 (409)
Q Consensus 171 I~aYGqTGSGKTyTm 185 (409)
|+.+|..|||||+.-
T Consensus 2 i~i~G~pGsGKst~a 16 (183)
T TIGR01359 2 VFVLGGPGSGKGTQC 16 (183)
T ss_pred EEEECCCCCCHHHHH
Confidence 688999999998763
No 229
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=46.69 E-value=7.3 Score=41.29 Aligned_cols=18 Identities=39% Similarity=0.468 Sum_probs=15.5
Q ss_pred eEEEeeccCCCCceeeec
Q psy4062 169 CSVFVYGATGAGKTHTML 186 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm~ 186 (409)
..+.-.|++|+|||.|+.
T Consensus 257 ~Vi~LvGpnGvGKTTTia 274 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTA 274 (484)
T ss_pred cEEEEECCCCccHHHHHH
Confidence 467779999999999984
No 230
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=46.57 E-value=13 Score=40.64 Aligned_cols=17 Identities=29% Similarity=0.468 Sum_probs=14.5
Q ss_pred eEEEeeccCCCCceeee
Q psy4062 169 CSVFVYGATGAGKTHTM 185 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm 185 (409)
..++..|+||||||...
T Consensus 257 ~~~Ll~g~TGSGKT~va 273 (630)
T TIGR00643 257 MNRLLQGDVGSGKTLVA 273 (630)
T ss_pred ccEEEECCCCCcHHHHH
Confidence 45799999999999865
No 231
>PRK14974 cell division protein FtsY; Provisional
Probab=46.32 E-value=15 Score=37.16 Aligned_cols=19 Identities=32% Similarity=0.536 Sum_probs=16.4
Q ss_pred ceEEEeeccCCCCceeeec
Q psy4062 168 NCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 168 N~tI~aYGqTGSGKTyTm~ 186 (409)
...|+-.|.+|+|||.|+.
T Consensus 140 ~~vi~~~G~~GvGKTTtia 158 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIA 158 (336)
T ss_pred CeEEEEEcCCCCCHHHHHH
Confidence 4678889999999999874
No 232
>PRK06696 uridine kinase; Validated
Probab=46.10 E-value=16 Score=34.17 Aligned_cols=30 Identities=27% Similarity=0.290 Sum_probs=20.5
Q ss_pred hHHHHHHHh---cCcceEEEeeccCCCCceeee
Q psy4062 156 TKDIIASLL---EGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 156 ~~plV~~vl---~G~N~tI~aYGqTGSGKTyTm 185 (409)
++.|.+.++ .+....|...|.+|||||+..
T Consensus 7 ~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA 39 (223)
T PRK06696 7 IKELAEHILTLNLTRPLRVAIDGITASGKTTFA 39 (223)
T ss_pred HHHHHHHHHHhCCCCceEEEEECCCCCCHHHHH
Confidence 344555554 345556777999999999854
No 233
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=46.04 E-value=13 Score=41.22 Aligned_cols=35 Identities=26% Similarity=0.458 Sum_probs=26.2
Q ss_pred hhhccchHHHHHHHh-cCcceEEEeeccCCCCceeee
Q psy4062 150 DVYDGSTKDIIASLL-EGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 150 eVf~~~~~plV~~vl-~G~N~tI~aYGqTGSGKTyTm 185 (409)
.||. ++.....+++ .|.|.||+.-|.+|||||.+.
T Consensus 68 Hifa-iA~~Ay~~m~~~~~~QsIiiSGESGaGKTes~ 103 (691)
T cd01380 68 HIFA-IAEEAYKQMTRDEKNQSIIVSGESGAGKTVSA 103 (691)
T ss_pred CHHH-HHHHHHHHHHhcCCCceEEEEcCCCCCchHHH
Confidence 3554 3344444544 699999999999999999986
No 234
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=46.01 E-value=17 Score=34.77 Aligned_cols=30 Identities=27% Similarity=0.278 Sum_probs=23.4
Q ss_pred hHHHHHHHhc--CcceEEEeeccCCCCceeee
Q psy4062 156 TKDIIASLLE--GYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 156 ~~plV~~vl~--G~N~tI~aYGqTGSGKTyTm 185 (409)
+..+.+.+.+ .-...|.-+|..|.|||...
T Consensus 5 ~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA 36 (287)
T PF00931_consen 5 IEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLA 36 (287)
T ss_dssp HHHHHHHHHTTTTSSEEEEEEESTTSSHHHHH
T ss_pred HHHHHHHhhCCCCCeEEEEEEcCCcCCcceee
Confidence 4556666766 56677888999999999776
No 235
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=45.98 E-value=8.6 Score=37.67 Aligned_cols=16 Identities=31% Similarity=0.453 Sum_probs=14.1
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
-|+-+|++|||||+..
T Consensus 60 ~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVA 75 (284)
T ss_pred eEEEEcCCCCCHHHHH
Confidence 5889999999999875
No 236
>PRK01172 ski2-like helicase; Provisional
Probab=45.95 E-value=14 Score=40.63 Aligned_cols=23 Identities=48% Similarity=0.479 Sum_probs=17.4
Q ss_pred HHHHhcCcceEEEeeccCCCCceee
Q psy4062 160 IASLLEGYNCSVFVYGATGAGKTHT 184 (409)
Q Consensus 160 V~~vl~G~N~tI~aYGqTGSGKTyT 184 (409)
++.+.+|.| ++..++||||||..
T Consensus 31 i~~l~~~~n--vlv~apTGSGKTl~ 53 (674)
T PRK01172 31 IEQLRKGEN--VIVSVPTAAGKTLI 53 (674)
T ss_pred HHHHhcCCc--EEEECCCCchHHHH
Confidence 344567776 57778999999975
No 237
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=45.92 E-value=8.4 Score=33.12 Aligned_cols=16 Identities=38% Similarity=0.584 Sum_probs=13.5
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
+|+.+|..|||||+..
T Consensus 1 ~i~l~G~~GsGKstla 16 (154)
T cd00464 1 NIVLIGMMGAGKTTVG 16 (154)
T ss_pred CEEEEcCCCCCHHHHH
Confidence 4788999999998764
No 238
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=45.84 E-value=7.2 Score=40.83 Aligned_cols=16 Identities=44% Similarity=0.771 Sum_probs=14.1
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
.++-||++|+|||.+.
T Consensus 219 gVLL~GPPGTGKT~LA 234 (438)
T PTZ00361 219 GVILYGPPGTGKTLLA 234 (438)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999876
No 239
>KOG0340|consensus
Probab=45.34 E-value=12 Score=37.97 Aligned_cols=30 Identities=33% Similarity=0.535 Sum_probs=25.0
Q ss_pred HHHHHHHhcCcceEEEeeccCCCCceeeecCC
Q psy4062 157 KDIIASLLEGYNCSVFVYGATGAGKTHTMLGN 188 (409)
Q Consensus 157 ~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G~ 188 (409)
..+|..+|+|.+| +.+..||||||...-.+
T Consensus 35 ~~cIpkILeGrdc--ig~AkTGsGKT~AFaLP 64 (442)
T KOG0340|consen 35 QACIPKILEGRDC--IGCAKTGSGKTAAFALP 64 (442)
T ss_pred hhhhHHHhccccc--ccccccCCCcchhhhHH
Confidence 4577889999998 67779999999988664
No 240
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=45.15 E-value=7.7 Score=34.04 Aligned_cols=14 Identities=29% Similarity=0.648 Sum_probs=11.1
Q ss_pred EEeeccCCCCceee
Q psy4062 171 VFVYGATGAGKTHT 184 (409)
Q Consensus 171 I~aYGqTGSGKTyT 184 (409)
|+-.|.+|||||+.
T Consensus 1 i~l~G~~GsGKSTl 14 (163)
T TIGR01313 1 FVLMGVAGSGKSTI 14 (163)
T ss_pred CEEECCCCCCHHHH
Confidence 35679999999854
No 241
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=45.11 E-value=16 Score=34.08 Aligned_cols=30 Identities=37% Similarity=0.399 Sum_probs=22.6
Q ss_pred hHHHHHHHhc-Cc--ceEEEeeccCCCCceeee
Q psy4062 156 TKDIIASLLE-GY--NCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 156 ~~plV~~vl~-G~--N~tI~aYGqTGSGKTyTm 185 (409)
+-+-+|.++. |+ ..+++.+|++|+|||+..
T Consensus 5 Gi~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~ 37 (229)
T TIGR03881 5 GVEGLDKLLEGGIPRGFFVAVTGEPGTGKTIFC 37 (229)
T ss_pred ChhhHHHhhcCCCcCCeEEEEECCCCCChHHHH
Confidence 3455777774 54 567888999999998865
No 242
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=45.08 E-value=7.4 Score=43.55 Aligned_cols=19 Identities=42% Similarity=0.642 Sum_probs=16.3
Q ss_pred ceEEEeeccCCCCceeeec
Q psy4062 168 NCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 168 N~tI~aYGqTGSGKTyTm~ 186 (409)
|..++..|.||||||++|.
T Consensus 430 n~n~~I~G~tGsGKS~~~~ 448 (797)
T TIGR02746 430 NYNIAVVGGSGAGKSFFMQ 448 (797)
T ss_pred ccceEEEcCCCCCHHHHHH
Confidence 5567889999999999983
No 243
>PRK07261 topology modulation protein; Provisional
Probab=45.07 E-value=11 Score=33.95 Aligned_cols=15 Identities=27% Similarity=0.574 Sum_probs=12.8
Q ss_pred EEeeccCCCCceeee
Q psy4062 171 VFVYGATGAGKTHTM 185 (409)
Q Consensus 171 I~aYGqTGSGKTyTm 185 (409)
|+-.|.+|||||.-.
T Consensus 3 i~i~G~~GsGKSTla 17 (171)
T PRK07261 3 IAIIGYSGSGKSTLA 17 (171)
T ss_pred EEEEcCCCCCHHHHH
Confidence 678999999998765
No 244
>PHA02624 large T antigen; Provisional
Probab=45.01 E-value=14 Score=40.17 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=21.8
Q ss_pred HHHHHhcCcce--EEEeeccCCCCceeee
Q psy4062 159 IIASLLEGYNC--SVFVYGATGAGKTHTM 185 (409)
Q Consensus 159 lV~~vl~G~N~--tI~aYGqTGSGKTyTm 185 (409)
+++.++.|... |++-||+.|||||+-.
T Consensus 420 ~lk~~l~giPKk~~il~~GPpnTGKTtf~ 448 (647)
T PHA02624 420 ILKLIVENVPKRRYWLFKGPVNSGKTTLA 448 (647)
T ss_pred HHHHHHhcCCCCeEEEEECCCCCCHHHHH
Confidence 46667777765 9999999999998754
No 245
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=44.89 E-value=16 Score=39.44 Aligned_cols=27 Identities=33% Similarity=0.589 Sum_probs=20.5
Q ss_pred HHHHHHHhcCcceEEEeeccCCCCceeee
Q psy4062 157 KDIIASLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 157 ~plV~~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
..++..+++|.|+ ++.-+||+|||.+.
T Consensus 19 ~~~i~~il~g~dv--lv~~PTG~GKTl~y 45 (591)
T TIGR01389 19 EEIISHVLDGRDV--LVVMPTGGGKSLCY 45 (591)
T ss_pred HHHHHHHHcCCCE--EEEcCCCccHhHHH
Confidence 4455678899985 55569999999874
No 246
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=44.80 E-value=7.8 Score=41.39 Aligned_cols=45 Identities=18% Similarity=0.330 Sum_probs=30.1
Q ss_pred eeEeeceEeCCCCCchhhhccchHHHHHHH--hcCcceEEEeeccCCCCceeeec
Q psy4062 134 MEFLFDRVYGPSESNQDVYDGSTKDIIASL--LEGYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 134 ~~F~FD~VF~~~asQ~eVf~~~~~plV~~v--l~G~N~tI~aYGqTGSGKTyTm~ 186 (409)
..+.||.+.+.+..- +.+++.+ +...+.-|+-+|.+||||++..-
T Consensus 199 ~~~~f~~~ig~s~~~--------~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~ 245 (520)
T PRK10820 199 DDSAFSQIVAVSPKM--------RQVVEQARKLAMLDAPLLITGDTGTGKDLLAY 245 (520)
T ss_pred ccccccceeECCHHH--------HHHHHHHHHHhCCCCCEEEECCCCccHHHHHH
Confidence 357888888754322 2233322 34467789999999999998763
No 247
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=44.72 E-value=8.7 Score=40.40 Aligned_cols=29 Identities=28% Similarity=0.445 Sum_probs=21.3
Q ss_pred cCcceEEEeeccCCCCceeeecCCCCCCchhhhh
Q psy4062 165 EGYNCSVFVYGATGAGKTHTMLGNENHKGIMYLT 198 (409)
Q Consensus 165 ~G~N~tI~aYGqTGSGKTyTm~G~~~~~GIi~~~ 198 (409)
-|.| +|.||+.|||||... ..-+||+|-.
T Consensus 197 GgHn--Ll~~GpPGtGKTmla---~Rl~~lLPpl 225 (490)
T COG0606 197 GGHN--LLLVGPPGTGKTMLA---SRLPGLLPPL 225 (490)
T ss_pred cCCc--EEEecCCCCchHHhh---hhhcccCCCC
Confidence 4444 688999999999887 4456777643
No 248
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=44.66 E-value=11 Score=36.44 Aligned_cols=46 Identities=22% Similarity=0.512 Sum_probs=30.6
Q ss_pred EeeceEeCCCCCchhhhccchHHHHHHHhcCcceE-EEeeccCCCCceeeec
Q psy4062 136 FLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCS-VFVYGATGAGKTHTML 186 (409)
Q Consensus 136 F~FD~VF~~~asQ~eVf~~~~~plV~~vl~G~N~t-I~aYGqTGSGKTyTm~ 186 (409)
..+|...+-+...+.+.+.+ .++++|..+- ++.||..|+|||.++-
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt-----~~Fl~G~pannvLL~G~rGtGKSSlVk 70 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENT-----EQFLQGLPANNVLLWGARGTGKSSLVK 70 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHH-----HHHHcCCCCcceEEecCCCCCHHHHHH
Confidence 34666666555555555443 4677876443 6779999999998874
No 249
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=44.64 E-value=15 Score=35.06 Aligned_cols=25 Identities=32% Similarity=0.557 Sum_probs=18.7
Q ss_pred HHHHhcC---cceEEEeeccCCCCceee
Q psy4062 160 IASLLEG---YNCSVFVYGATGAGKTHT 184 (409)
Q Consensus 160 V~~vl~G---~N~tI~aYGqTGSGKTyT 184 (409)
+|.++.| ....++.||..|||||--
T Consensus 12 lD~~l~GG~p~g~~~lI~G~pGsGKT~f 39 (260)
T COG0467 12 LDEILGGGLPRGSVVLITGPPGTGKTIF 39 (260)
T ss_pred hHHHhcCCCcCCcEEEEEcCCCCcHHHH
Confidence 5556654 357789999999999843
No 250
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=44.50 E-value=15 Score=38.45 Aligned_cols=19 Identities=32% Similarity=0.515 Sum_probs=16.3
Q ss_pred ceEEEeeccCCCCceeeec
Q psy4062 168 NCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 168 N~tI~aYGqTGSGKTyTm~ 186 (409)
...|+-+|.+|+|||.|..
T Consensus 95 p~vI~lvG~~GsGKTTtaa 113 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAA 113 (437)
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 4578889999999999984
No 251
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=44.44 E-value=11 Score=33.56 Aligned_cols=15 Identities=33% Similarity=0.565 Sum_probs=12.9
Q ss_pred EEeeccCCCCceeee
Q psy4062 171 VFVYGATGAGKTHTM 185 (409)
Q Consensus 171 I~aYGqTGSGKTyTm 185 (409)
++.+|.+|+|||...
T Consensus 2 ~li~G~~G~GKT~l~ 16 (187)
T cd01124 2 TLLSGGPGTGKTTFA 16 (187)
T ss_pred EEEEcCCCCCHHHHH
Confidence 678999999999754
No 252
>KOG1803|consensus
Probab=44.38 E-value=12 Score=40.43 Aligned_cols=18 Identities=33% Similarity=0.604 Sum_probs=15.2
Q ss_pred eEEEeeccCCCCceeeec
Q psy4062 169 CSVFVYGATGAGKTHTML 186 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm~ 186 (409)
-..+-.|+.|+|||||+.
T Consensus 202 ~l~~I~GPPGTGKT~Tlv 219 (649)
T KOG1803|consen 202 DLLIIHGPPGTGKTRTLV 219 (649)
T ss_pred CceEeeCCCCCCceeeHH
Confidence 456779999999999984
No 253
>KOG0330|consensus
Probab=44.24 E-value=14 Score=38.09 Aligned_cols=25 Identities=32% Similarity=0.425 Sum_probs=19.4
Q ss_pred HHHHHhcCcceEEEeeccCCCCceeee
Q psy4062 159 IIASLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 159 lV~~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
.+..+++|.++-.+| +||||||-+.
T Consensus 91 aiP~~L~g~dvIglA--eTGSGKT~af 115 (476)
T KOG0330|consen 91 AIPVALGGRDVIGLA--ETGSGKTGAF 115 (476)
T ss_pred hcchhhCCCcEEEEe--ccCCCchhhh
Confidence 455688999985554 9999999775
No 254
>PRK08118 topology modulation protein; Reviewed
Probab=44.24 E-value=9.9 Score=34.06 Aligned_cols=14 Identities=29% Similarity=0.695 Sum_probs=12.1
Q ss_pred EEeeccCCCCceee
Q psy4062 171 VFVYGATGAGKTHT 184 (409)
Q Consensus 171 I~aYGqTGSGKTyT 184 (409)
|+..|+.|||||.-
T Consensus 4 I~I~G~~GsGKSTl 17 (167)
T PRK08118 4 IILIGSGGSGKSTL 17 (167)
T ss_pred EEEECCCCCCHHHH
Confidence 78899999999953
No 255
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=44.22 E-value=9.9 Score=34.13 Aligned_cols=15 Identities=27% Similarity=0.651 Sum_probs=12.8
Q ss_pred EEeeccCCCCceeee
Q psy4062 171 VFVYGATGAGKTHTM 185 (409)
Q Consensus 171 I~aYGqTGSGKTyTm 185 (409)
|+.+|..|||||+..
T Consensus 2 I~i~G~pGsGKst~a 16 (194)
T cd01428 2 ILLLGPPGSGKGTQA 16 (194)
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999998654
No 256
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=44.14 E-value=17 Score=35.85 Aligned_cols=31 Identities=29% Similarity=0.419 Sum_probs=23.6
Q ss_pred chHHHHHHHhcCc---ceEEEeeccCCCCceeee
Q psy4062 155 STKDIIASLLEGY---NCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 155 ~~~plV~~vl~G~---N~tI~aYGqTGSGKTyTm 185 (409)
+..+-++.+|.|- ...+..||.+|||||..+
T Consensus 79 Tg~~~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~ 112 (310)
T TIGR02236 79 TGSKELDELLGGGIETQAITEVFGEFGSGKTQIC 112 (310)
T ss_pred CCCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 4456778888753 566788999999999765
No 257
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=43.77 E-value=7.9 Score=38.58 Aligned_cols=19 Identities=32% Similarity=0.494 Sum_probs=16.0
Q ss_pred ceEEEeeccCCCCceeeec
Q psy4062 168 NCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 168 N~tI~aYGqTGSGKTyTm~ 186 (409)
.-+|+-.|.||||||..|.
T Consensus 143 ~~siii~G~t~sGKTt~ln 161 (312)
T COG0630 143 RKSIIICGGTASGKTTLLN 161 (312)
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 3457899999999999984
No 258
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=43.72 E-value=8.9 Score=42.32 Aligned_cols=44 Identities=25% Similarity=0.396 Sum_probs=27.4
Q ss_pred EeeceEeCCCCCchhhhccchHHHHHHHhcCcceEEEeeccCCCCceeee
Q psy4062 136 FLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 136 F~FD~VF~~~asQ~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
+.|+.+++.+..-..+.+. ++. +...+..|+-+|.+|||||+.-
T Consensus 373 ~~~~~liG~S~~~~~~~~~-----~~~-~a~~~~pVLI~GE~GTGK~~lA 416 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQ-----VEM-VAQSDSTVLILGETGTGKELIA 416 (686)
T ss_pred ccccceeecCHHHHHHHHH-----HHH-HhCCCCCEEEECCCCcCHHHHH
Confidence 5666666643322222221 122 3456788999999999999865
No 259
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=43.52 E-value=13 Score=36.43 Aligned_cols=37 Identities=24% Similarity=0.339 Sum_probs=24.2
Q ss_pred CCCCchhhhccchHHHHHHHhcCcceEEEeeccCCCCceeeec
Q psy4062 144 PSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 144 ~~asQ~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~ 186 (409)
+...|.++-+ .+.+.+-+|-+ ++.=.+||+|||.+.+
T Consensus 9 ~r~~Q~~~m~----~v~~~~~~~~~--~~~eapTGtGKTl~~L 45 (289)
T smart00489 9 PYPIQYEFME----ELKRVLDRGKI--GILESPTGTGKTLSLL 45 (289)
T ss_pred CCHHHHHHHH----HHHHHHHcCCc--EEEECCCCcchhHHHH
Confidence 3455665443 34455566755 4666799999998875
No 260
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=43.52 E-value=13 Score=36.43 Aligned_cols=37 Identities=24% Similarity=0.339 Sum_probs=24.2
Q ss_pred CCCCchhhhccchHHHHHHHhcCcceEEEeeccCCCCceeeec
Q psy4062 144 PSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 144 ~~asQ~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~ 186 (409)
+...|.++-+ .+.+.+-+|-+ ++.=.+||+|||.+.+
T Consensus 9 ~r~~Q~~~m~----~v~~~~~~~~~--~~~eapTGtGKTl~~L 45 (289)
T smart00488 9 PYPIQYEFME----ELKRVLDRGKI--GILESPTGTGKTLSLL 45 (289)
T ss_pred CCHHHHHHHH----HHHHHHHcCCc--EEEECCCCcchhHHHH
Confidence 3455665443 34455566755 4666799999998875
No 261
>TIGR03744 traC_PFL_4706 conjugative transfer ATPase, PFL_4706 family. Members of this protein family are predicted ATP-binding proteins apparently associated with DNA conjugal transfer. Members are found both in plasmids and in bacterial chromosomal regions that appear to derive from integrative elements such as conjugative transposons. More distant homologs, outside the scope of this family, include type IV secretion/conjugal transfer proteins such as TraC, VirB4 and TrsE. The granularity of this protein family definition is chosen so as to represent one distinctive clade and act as a marker through which to define and recognize the class of mobile element it serves.
Probab=43.49 E-value=8.2 Score=44.08 Aligned_cols=20 Identities=40% Similarity=0.697 Sum_probs=17.7
Q ss_pred cceEEEeeccCCCCceeeec
Q psy4062 167 YNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 167 ~N~tI~aYGqTGSGKTyTm~ 186 (409)
-|+-.+..|.||||||++|.
T Consensus 474 ~n~n~~I~G~TGSGKS~l~~ 493 (893)
T TIGR03744 474 KNAHLLILGPTGAGKSATLT 493 (893)
T ss_pred CcccEEEECCCCCCHHHHHH
Confidence 47888999999999999983
No 262
>CHL00195 ycf46 Ycf46; Provisional
Probab=43.32 E-value=9.3 Score=40.57 Aligned_cols=18 Identities=28% Similarity=0.460 Sum_probs=15.5
Q ss_pred eEEEeeccCCCCceeeec
Q psy4062 169 CSVFVYGATGAGKTHTML 186 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm~ 186 (409)
-.|+-||+.|||||++.-
T Consensus 260 kGILL~GPpGTGKTllAk 277 (489)
T CHL00195 260 RGLLLVGIQGTGKSLTAK 277 (489)
T ss_pred ceEEEECCCCCcHHHHHH
Confidence 569999999999998763
No 263
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=43.22 E-value=12 Score=30.47 Aligned_cols=15 Identities=40% Similarity=0.764 Sum_probs=12.8
Q ss_pred EEeeccCCCCceeee
Q psy4062 171 VFVYGATGAGKTHTM 185 (409)
Q Consensus 171 I~aYGqTGSGKTyTm 185 (409)
|+..|..|+|||.-+
T Consensus 2 I~V~G~~g~GKTsLi 16 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLI 16 (119)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECcCCCCHHHHH
Confidence 678999999999754
No 264
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=43.17 E-value=12 Score=35.77 Aligned_cols=17 Identities=35% Similarity=0.491 Sum_probs=14.1
Q ss_pred EEEeeccCCCCceeeec
Q psy4062 170 SVFVYGATGAGKTHTML 186 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm~ 186 (409)
+-..+|++|+|||.|+-
T Consensus 34 ~~~~~GpagtGKtetik 50 (231)
T PF12774_consen 34 GGALSGPAGTGKTETIK 50 (231)
T ss_dssp EEEEESSTTSSHHHHHH
T ss_pred CCCCcCCCCCCchhHHH
Confidence 33569999999999984
No 265
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=43.13 E-value=9.2 Score=39.45 Aligned_cols=18 Identities=39% Similarity=0.595 Sum_probs=15.3
Q ss_pred eEEEeeccCCCCceeeec
Q psy4062 169 CSVFVYGATGAGKTHTML 186 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm~ 186 (409)
-.++-.|++|+|||+|+.
T Consensus 207 ~ii~lvGptGvGKTTt~a 224 (407)
T PRK12726 207 RIISLIGQTGVGKTTTLV 224 (407)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 356789999999999985
No 266
>CHL00176 ftsH cell division protein; Validated
Probab=42.97 E-value=7.6 Score=42.63 Aligned_cols=18 Identities=33% Similarity=0.449 Sum_probs=15.5
Q ss_pred eEEEeeccCCCCceeeec
Q psy4062 169 CSVFVYGATGAGKTHTML 186 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm~ 186 (409)
..|+-||++|+|||+..-
T Consensus 217 ~gVLL~GPpGTGKT~LAr 234 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLAK 234 (638)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 458999999999999864
No 267
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=42.93 E-value=9 Score=39.78 Aligned_cols=18 Identities=39% Similarity=0.615 Sum_probs=15.8
Q ss_pred eEEEeeccCCCCceeeec
Q psy4062 169 CSVFVYGATGAGKTHTML 186 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm~ 186 (409)
..|+-.|++|+|||.|+.
T Consensus 242 ~vI~LVGptGvGKTTTia 259 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLA 259 (436)
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 467889999999999984
No 268
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=42.77 E-value=7.6 Score=43.26 Aligned_cols=51 Identities=24% Similarity=0.410 Sum_probs=27.7
Q ss_pred eEeeceEeCCCCCchhhhccchHHHHH-HHhc--C--cceEEEeeccCCCCceeee
Q psy4062 135 EFLFDRVYGPSESNQDVYDGSTKDIIA-SLLE--G--YNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 135 ~F~FD~VF~~~asQ~eVf~~~~~plV~-~vl~--G--~N~tI~aYGqTGSGKTyTm 185 (409)
.+.||.|-+.+..-+.+.+.+..|+-. .+++ | ..-.|+-||++|+|||+.+
T Consensus 174 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~la 229 (733)
T TIGR01243 174 KVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLA 229 (733)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHH
Confidence 366777665433333333332222211 1222 1 1246899999999999875
No 269
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=42.68 E-value=18 Score=34.82 Aligned_cols=19 Identities=21% Similarity=0.393 Sum_probs=15.5
Q ss_pred cCc--ceEEEeeccCCCCcee
Q psy4062 165 EGY--NCSVFVYGATGAGKTH 183 (409)
Q Consensus 165 ~G~--N~tI~aYGqTGSGKTy 183 (409)
.|+ ..+++.+|.+|+|||.
T Consensus 31 GGip~gs~~lI~G~pGtGKT~ 51 (259)
T TIGR03878 31 GGIPAYSVINITGVSDTGKSL 51 (259)
T ss_pred CCeECCcEEEEEcCCCCCHHH
Confidence 454 5778889999999986
No 270
>KOG0729|consensus
Probab=42.66 E-value=13 Score=36.55 Aligned_cols=21 Identities=38% Similarity=0.656 Sum_probs=16.0
Q ss_pred cCcc--eEEEeeccCCCCceeee
Q psy4062 165 EGYN--CSVFVYGATGAGKTHTM 185 (409)
Q Consensus 165 ~G~N--~tI~aYGqTGSGKTyTm 185 (409)
-|.+ -.|+.||+.|+|||..-
T Consensus 206 lgidppkgvllygppgtgktl~a 228 (435)
T KOG0729|consen 206 LGIDPPKGVLLYGPPGTGKTLCA 228 (435)
T ss_pred cCCCCCCceEEeCCCCCchhHHH
Confidence 3554 45899999999998643
No 271
>PRK06217 hypothetical protein; Validated
Probab=42.61 E-value=11 Score=34.10 Aligned_cols=15 Identities=33% Similarity=0.589 Sum_probs=12.8
Q ss_pred EEeeccCCCCceeee
Q psy4062 171 VFVYGATGAGKTHTM 185 (409)
Q Consensus 171 I~aYGqTGSGKTyTm 185 (409)
|+-.|.+|||||+.-
T Consensus 4 I~i~G~~GsGKSTla 18 (183)
T PRK06217 4 IHITGASGSGTTTLG 18 (183)
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999998653
No 272
>KOG0739|consensus
Probab=42.59 E-value=11 Score=37.67 Aligned_cols=48 Identities=21% Similarity=0.424 Sum_probs=32.5
Q ss_pred eceEeCCCCCchhhhccchHHH-HHHHhcCcc---eEEEeeccCCCCceeee
Q psy4062 138 FDRVYGPSESNQDVYDGSTKDI-IASLLEGYN---CSVFVYGATGAGKTHTM 185 (409)
Q Consensus 138 FD~VF~~~asQ~eVf~~~~~pl-V~~vl~G~N---~tI~aYGqTGSGKTyTm 185 (409)
.+-|-+-+..-+.+=+.++.|+ ..++|.|-- ..|+.||+.|+||+|--
T Consensus 132 WsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLA 183 (439)
T KOG0739|consen 132 WSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLA 183 (439)
T ss_pred hhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHH
Confidence 4455554444555555555554 456776654 67999999999999965
No 273
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=42.43 E-value=16 Score=34.27 Aligned_cols=20 Identities=30% Similarity=0.323 Sum_probs=15.1
Q ss_pred CcceEEEeeccCCCCceeee
Q psy4062 166 GYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 166 G~N~tI~aYGqTGSGKTyTm 185 (409)
+..-.|.-.|.+|||||+.+
T Consensus 31 ~~~~iigi~G~~GsGKTTl~ 50 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLA 50 (229)
T ss_pred CCCEEEEEECCCCCCHHHHH
Confidence 44445666899999999865
No 274
>KOG1547|consensus
Probab=42.27 E-value=23 Score=34.26 Aligned_cols=31 Identities=19% Similarity=0.472 Sum_probs=23.4
Q ss_pred cchHHHHHHHh-cCcceEEEeeccCCCCceee
Q psy4062 154 GSTKDIIASLL-EGYNCSVFVYGATGAGKTHT 184 (409)
Q Consensus 154 ~~~~plV~~vl-~G~N~tI~aYGqTGSGKTyT 184 (409)
.++.++=..++ .||.-.||..||+|.|||..
T Consensus 31 tI~~Qm~~k~mk~GF~FNIMVVgqSglgkstl 62 (336)
T KOG1547|consen 31 TIIEQMRKKTMKTGFDFNIMVVGQSGLGKSTL 62 (336)
T ss_pred HHHHHHHHHHHhccCceEEEEEecCCCCchhh
Confidence 34444544444 69999999999999999754
No 275
>PRK08233 hypothetical protein; Provisional
Probab=42.12 E-value=11 Score=33.36 Aligned_cols=16 Identities=25% Similarity=0.403 Sum_probs=12.5
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
.|.--|++|||||+..
T Consensus 5 iI~I~G~~GsGKtTla 20 (182)
T PRK08233 5 IITIAAVSGGGKTTLT 20 (182)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3555799999999765
No 276
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=41.88 E-value=9.9 Score=40.88 Aligned_cols=43 Identities=19% Similarity=0.434 Sum_probs=27.7
Q ss_pred eEeeceEeCCCCCchhhhccchHHHHHHH--hcCcceEEEeeccCCCCceeee
Q psy4062 135 EFLFDRVYGPSESNQDVYDGSTKDIIASL--LEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 135 ~F~FD~VF~~~asQ~eVf~~~~~plV~~v--l~G~N~tI~aYGqTGSGKTyTm 185 (409)
.|.||.+++.+. .+..+.+.+ +...+..|+-+|.+||||++.-
T Consensus 215 ~~~f~~iiG~S~--------~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A 259 (538)
T PRK15424 215 RYVLGDLLGQSP--------QMEQVRQTILLYARSSAAVLIQGETGTGKELAA 259 (538)
T ss_pred ccchhheeeCCH--------HHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHH
Confidence 356776666433 222333332 3567889999999999998654
No 277
>PHA01747 putative ATP-dependent protease
Probab=41.81 E-value=11 Score=38.53 Aligned_cols=31 Identities=19% Similarity=0.275 Sum_probs=25.9
Q ss_pred hHHHHHHHhcCcceEEEeeccCCCCceeeec
Q psy4062 156 TKDIIASLLEGYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 156 ~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~ 186 (409)
+-|+|+.-..+-|.-++=.|+.||||||+..
T Consensus 178 LiPlVE~~~~~~NyNliELgPRGTGKS~~f~ 208 (425)
T PHA01747 178 LLPLFTSPVSKRPVHIIELSNRGTGKTTTFV 208 (425)
T ss_pred hhhheeccCCCCCeeEEEecCCCCChhhHHH
Confidence 4677776667889999999999999999863
No 278
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=41.71 E-value=9.9 Score=33.91 Aligned_cols=16 Identities=38% Similarity=0.767 Sum_probs=14.2
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
.++..|++|||||..+
T Consensus 3 ~~~i~G~sGsGKttl~ 18 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLL 18 (179)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5678999999999987
No 279
>PTZ00110 helicase; Provisional
Probab=41.48 E-value=18 Score=38.94 Aligned_cols=25 Identities=28% Similarity=0.290 Sum_probs=19.3
Q ss_pred HHHHHhcCcceEEEeeccCCCCceeee
Q psy4062 159 IIASLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 159 lV~~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
.+..++.|.|. ++..+||||||.+.
T Consensus 160 aip~~l~G~dv--I~~ApTGSGKTlay 184 (545)
T PTZ00110 160 GWPIALSGRDM--IGIAETGSGKTLAF 184 (545)
T ss_pred HHHHHhcCCCE--EEEeCCCChHHHHH
Confidence 34567889876 56679999999863
No 280
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=41.43 E-value=13 Score=31.44 Aligned_cols=15 Identities=27% Similarity=0.592 Sum_probs=12.6
Q ss_pred EEeeccCCCCceeee
Q psy4062 171 VFVYGATGAGKTHTM 185 (409)
Q Consensus 171 I~aYGqTGSGKTyTm 185 (409)
|+-.|++|||||..-
T Consensus 2 I~i~G~~GsGKst~a 16 (147)
T cd02020 2 IAIDGPAGSGKSTVA 16 (147)
T ss_pred EEEECCCCCCHHHHH
Confidence 577899999999754
No 281
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=41.38 E-value=18 Score=38.25 Aligned_cols=65 Identities=22% Similarity=0.191 Sum_probs=38.3
Q ss_pred ccchhHHHHHHHHHHHhcCC--CCcccCCchhhHhhh-hccCCCc------cEEEEEEeCCCCCCHHHHHHHHH
Q psy4062 281 NINKSLLALGNCINSLADGC--RHVPYRDSKLTRILK-DSLGGNC------KTVMIANIAPTALSYEDSYNTLK 345 (409)
Q Consensus 281 ~IN~SL~aL~~vI~aL~~~~--~~iPyRdSkLT~LLk-~sLgGn~------~t~~I~~isP~~~~~~eTl~TL~ 345 (409)
-+-||.+++.-+-+++..+. -++.+-+|.=.-+.+ ++||-+- ..+.|.++.|.....++.+..+.
T Consensus 273 G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~~~~~~~i~ 346 (484)
T TIGR02655 273 GTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGLEDHLQIIK 346 (484)
T ss_pred CCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCChHHHHHHHH
Confidence 34588888888777776653 456666664221111 2344322 23667777888777777666554
No 282
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=41.32 E-value=8.5 Score=39.44 Aligned_cols=17 Identities=41% Similarity=0.802 Sum_probs=12.9
Q ss_pred EEEeeccCCCCceeeec
Q psy4062 170 SVFVYGATGAGKTHTML 186 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm~ 186 (409)
-++..|.||||||.+|.
T Consensus 17 ~~li~G~~GsGKT~~i~ 33 (386)
T PF10412_consen 17 HILIIGATGSGKTQAIR 33 (386)
T ss_dssp -EEEEE-TTSSHHHHHH
T ss_pred cEEEECCCCCCHHHHHH
Confidence 47889999999998764
No 283
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=40.95 E-value=11 Score=31.63 Aligned_cols=18 Identities=39% Similarity=0.654 Sum_probs=14.3
Q ss_pred eEEEeeccCCCCceeeec
Q psy4062 169 CSVFVYGATGAGKTHTML 186 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm~ 186 (409)
..+.-.|++|||||.++.
T Consensus 16 e~v~I~GpSGsGKSTLl~ 33 (107)
T cd00820 16 VGVLITGDSGIGKTELAL 33 (107)
T ss_pred EEEEEEcCCCCCHHHHHH
Confidence 346778999999998763
No 284
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=40.86 E-value=9.9 Score=40.74 Aligned_cols=45 Identities=20% Similarity=0.411 Sum_probs=30.0
Q ss_pred eeEeeceEeCCCCCchhhhccchHHHHHHH--hcCcceEEEeeccCCCCceeeec
Q psy4062 134 MEFLFDRVYGPSESNQDVYDGSTKDIIASL--LEGYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 134 ~~F~FD~VF~~~asQ~eVf~~~~~plV~~v--l~G~N~tI~aYGqTGSGKTyTm~ 186 (409)
..|.||.+++.+. .++.+.+.+ +...+..|+-+|.+||||++...
T Consensus 207 ~~~~f~~iiG~S~--------~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~ 253 (526)
T TIGR02329 207 TRYRLDDLLGASA--------PMEQVRALVRLYARSDATVLILGESGTGKELVAQ 253 (526)
T ss_pred cccchhheeeCCH--------HHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHH
Confidence 3477887776533 223333332 35678899999999999987653
No 285
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=40.74 E-value=19 Score=40.27 Aligned_cols=26 Identities=19% Similarity=0.160 Sum_probs=19.5
Q ss_pred HHHHHHhcCcceEEEeeccCCCCceeee
Q psy4062 158 DIIASLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 158 plV~~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
..+..+++|.|..+. -+||||||...
T Consensus 43 ~ai~~il~G~nvvv~--apTGSGKTla~ 68 (742)
T TIGR03817 43 RAAELAHAGRHVVVA--TGTASGKSLAY 68 (742)
T ss_pred HHHHHHHCCCCEEEE--CCCCCcHHHHH
Confidence 345567899996554 48999999864
No 286
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=40.67 E-value=16 Score=41.09 Aligned_cols=35 Identities=29% Similarity=0.488 Sum_probs=26.2
Q ss_pred hhhccchHHHHHHHh-cCcceEEEeeccCCCCceeee
Q psy4062 150 DVYDGSTKDIIASLL-EGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 150 eVf~~~~~plV~~vl-~G~N~tI~aYGqTGSGKTyTm 185 (409)
.||. ++.....+++ .|.|-||+.-|.+|||||.|.
T Consensus 68 Hifa-iA~~Ay~~m~~~~~~QsIiiSGESGAGKTe~t 103 (767)
T cd01386 68 HIYS-LAQTAYRALLETRRDQSIIFLGRSGAGKTTSC 103 (767)
T ss_pred CHHH-HHHHHHHHHHHcCCCceEEEecCCCCCcHHHH
Confidence 4554 3344444544 589999999999999999986
No 287
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=40.53 E-value=13 Score=31.94 Aligned_cols=21 Identities=24% Similarity=0.419 Sum_probs=16.9
Q ss_pred cCcceEEEeeccCCCCceeee
Q psy4062 165 EGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 165 ~G~N~tI~aYGqTGSGKTyTm 185 (409)
...+.-|+-+|..||||++..
T Consensus 18 a~~~~pvli~GE~GtGK~~~A 38 (138)
T PF14532_consen 18 AKSSSPVLITGEPGTGKSLLA 38 (138)
T ss_dssp HCSSS-EEEECCTTSSHHHHH
T ss_pred hCCCCcEEEEcCCCCCHHHHH
Confidence 366778899999999999864
No 288
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=40.36 E-value=13 Score=38.66 Aligned_cols=18 Identities=33% Similarity=0.621 Sum_probs=15.3
Q ss_pred ceEEEeeccCCCCceeee
Q psy4062 168 NCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 168 N~tI~aYGqTGSGKTyTm 185 (409)
...|+-+|++|+|||+..
T Consensus 108 ~~~iLl~Gp~GtGKT~lA 125 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLA 125 (412)
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 366999999999999765
No 289
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=40.17 E-value=13 Score=36.36 Aligned_cols=18 Identities=33% Similarity=0.575 Sum_probs=14.5
Q ss_pred eEEEeeccCCCCceeeec
Q psy4062 169 CSVFVYGATGAGKTHTML 186 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm~ 186 (409)
.+|+..|++|+|||.|..
T Consensus 73 ~vi~l~G~~G~GKTTt~a 90 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIA 90 (272)
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 456666999999999974
No 290
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=40.13 E-value=24 Score=35.45 Aligned_cols=33 Identities=24% Similarity=0.317 Sum_probs=25.8
Q ss_pred ccchHHHHHHHhc--Cc--ceEEEeeccCCCCceeee
Q psy4062 153 DGSTKDIIASLLE--GY--NCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 153 ~~~~~plV~~vl~--G~--N~tI~aYGqTGSGKTyTm 185 (409)
-.++-+-+|.+|. |+ ...+.-||+.|||||...
T Consensus 36 isTGi~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLa 72 (325)
T cd00983 36 IPTGSLSLDIALGIGGYPKGRIIEIYGPESSGKTTLA 72 (325)
T ss_pred ecCCCHHHHHHhcCCCccCCeEEEEECCCCCCHHHHH
Confidence 3467888999987 55 456778999999999654
No 291
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=40.09 E-value=11 Score=28.88 Aligned_cols=15 Identities=40% Similarity=0.589 Sum_probs=12.1
Q ss_pred EEeeccCCCCceeee
Q psy4062 171 VFVYGATGAGKTHTM 185 (409)
Q Consensus 171 I~aYGqTGSGKTyTm 185 (409)
++.+|..|+|||.+.
T Consensus 2 ~~~~g~~G~Gktt~~ 16 (99)
T cd01983 2 IVVTGKGGVGKTTLA 16 (99)
T ss_pred EEEECCCCCCHHHHH
Confidence 456788899999875
No 292
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=40.08 E-value=22 Score=35.22 Aligned_cols=32 Identities=28% Similarity=0.410 Sum_probs=23.9
Q ss_pred chHHHHHHHhcC-c--ceEEEeeccCCCCceeeec
Q psy4062 155 STKDIIASLLEG-Y--NCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 155 ~~~plV~~vl~G-~--N~tI~aYGqTGSGKTyTm~ 186 (409)
+.-+-++.++.| + ...+.-||.+|||||....
T Consensus 86 Tg~~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~ 120 (317)
T PRK04301 86 TGSKELDELLGGGIETQSITEFYGEFGSGKTQICH 120 (317)
T ss_pred CCCHHHHHHhcCCccCCcEEEEECCCCCCHhHHHH
Confidence 445677788875 3 5667889999999997653
No 293
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=40.05 E-value=14 Score=39.27 Aligned_cols=41 Identities=22% Similarity=0.314 Sum_probs=25.7
Q ss_pred eeceEeCCCCCchhhhccchHHHHHHHhcCcce-EEEeeccCCCCceeee
Q psy4062 137 LFDRVYGPSESNQDVYDGSTKDIIASLLEGYNC-SVFVYGATGAGKTHTM 185 (409)
Q Consensus 137 ~FD~VF~~~asQ~eVf~~~~~plV~~vl~G~N~-tI~aYGqTGSGKTyTm 185 (409)
+||.|.++ +.+ ++.|-..+-.|.-. .++-||+.|+|||.+.
T Consensus 11 ~f~dliGQ----e~v----v~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~A 52 (491)
T PRK14964 11 SFKDLVGQ----DVL----VRILRNAFTLNKIPQSILLVGASGVGKTTCA 52 (491)
T ss_pred CHHHhcCc----HHH----HHHHHHHHHcCCCCceEEEECCCCccHHHHH
Confidence 46766653 332 23333334455544 7999999999999854
No 294
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=39.93 E-value=12 Score=39.99 Aligned_cols=16 Identities=44% Similarity=0.804 Sum_probs=13.9
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
.|+-||++|+|||+..
T Consensus 218 GILLyGPPGTGKT~LA 233 (512)
T TIGR03689 218 GVLLYGPPGCGKTLIA 233 (512)
T ss_pred ceEEECCCCCcHHHHH
Confidence 4888999999999765
No 295
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=39.90 E-value=15 Score=38.56 Aligned_cols=41 Identities=22% Similarity=0.296 Sum_probs=26.8
Q ss_pred eeceEeCCCCCchhhhccchHHHHHHHhcCc-ceEEEeeccCCCCceeee
Q psy4062 137 LFDRVYGPSESNQDVYDGSTKDIIASLLEGY-NCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 137 ~FD~VF~~~asQ~eVf~~~~~plV~~vl~G~-N~tI~aYGqTGSGKTyTm 185 (409)
.||.|++. +.+ +..+...+-.|. .-.++-||+.|+|||.+.
T Consensus 15 ~~~diiGq----~~~----v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A 56 (451)
T PRK06305 15 TFSEILGQ----DAV----VAVLKNALRFNRAAHAYLFSGIRGTGKTTLA 56 (451)
T ss_pred CHHHhcCc----HHH----HHHHHHHHHcCCCceEEEEEcCCCCCHHHHH
Confidence 47777764 333 344444454564 345777999999999766
No 296
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=39.71 E-value=13 Score=34.62 Aligned_cols=16 Identities=31% Similarity=0.613 Sum_probs=13.9
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
.|+..|.||||||.+.
T Consensus 2 ~IlllG~tGsGKSs~~ 17 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLG 17 (212)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5889999999999764
No 297
>KOG0953|consensus
Probab=39.71 E-value=13 Score=39.77 Aligned_cols=17 Identities=35% Similarity=0.470 Sum_probs=15.2
Q ss_pred EEEeeccCCCCceeeec
Q psy4062 170 SVFVYGATGAGKTHTML 186 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm~ 186 (409)
-||..|+|.|||||--.
T Consensus 193 Ii~H~GPTNSGKTy~AL 209 (700)
T KOG0953|consen 193 IIMHVGPTNSGKTYRAL 209 (700)
T ss_pred EEEEeCCCCCchhHHHH
Confidence 48999999999999864
No 298
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=39.62 E-value=24 Score=35.18 Aligned_cols=31 Identities=23% Similarity=0.333 Sum_probs=24.1
Q ss_pred chHHHHHHHhcC-c--ceEEEeeccCCCCceeee
Q psy4062 155 STKDIIASLLEG-Y--NCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 155 ~~~plV~~vl~G-~--N~tI~aYGqTGSGKTyTm 185 (409)
++-+-+|.+|.| + ...+.-||..|||||.-+
T Consensus 80 TG~~~LD~lLgGGi~~G~iteI~G~~GsGKTql~ 113 (313)
T TIGR02238 80 TGSQALDGILGGGIESMSITEVFGEFRCGKTQLS 113 (313)
T ss_pred CCCHHHHHHhCCCCcCCeEEEEECCCCCCcCHHH
Confidence 557788999986 3 455678999999999754
No 299
>PRK13767 ATP-dependent helicase; Provisional
Probab=39.58 E-value=20 Score=40.86 Aligned_cols=24 Identities=38% Similarity=0.491 Sum_probs=18.0
Q ss_pred HHHHhcCcceEEEeeccCCCCceeee
Q psy4062 160 IASLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 160 V~~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
+..+++|.|+.| ..+||||||...
T Consensus 41 i~~il~g~nvli--~APTGSGKTlaa 64 (876)
T PRK13767 41 IPLIHEGKNVLI--SSPTGSGKTLAA 64 (876)
T ss_pred HHHHHcCCCEEE--ECCCCCcHHHHH
Confidence 345678988655 559999999864
No 300
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=39.57 E-value=11 Score=39.13 Aligned_cols=19 Identities=37% Similarity=0.420 Sum_probs=16.1
Q ss_pred ceEEEeeccCCCCceeeec
Q psy4062 168 NCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 168 N~tI~aYGqTGSGKTyTm~ 186 (409)
...+...|++|+|||.|+-
T Consensus 191 g~vi~lvGpnG~GKTTtla 209 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTA 209 (420)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3567889999999999983
No 301
>KOG0735|consensus
Probab=39.52 E-value=13 Score=41.20 Aligned_cols=22 Identities=27% Similarity=0.528 Sum_probs=17.9
Q ss_pred CcceEEEeeccCCCCceeeecC
Q psy4062 166 GYNCSVFVYGATGAGKTHTMLG 187 (409)
Q Consensus 166 G~N~tI~aYGqTGSGKTyTm~G 187 (409)
-....|+-||+.|+||||-...
T Consensus 699 r~~~giLLyGppGcGKT~la~a 720 (952)
T KOG0735|consen 699 RLRTGILLYGPPGCGKTLLASA 720 (952)
T ss_pred ccccceEEECCCCCcHHHHHHH
Confidence 3456799999999999998754
No 302
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=39.45 E-value=23 Score=32.93 Aligned_cols=27 Identities=30% Similarity=0.497 Sum_probs=19.9
Q ss_pred HHHHHhc-Cc--ceEEEeeccCCCCceeee
Q psy4062 159 IIASLLE-GY--NCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 159 lV~~vl~-G~--N~tI~aYGqTGSGKTyTm 185 (409)
-+|.++. |+ ...++-+|.+|+|||.-.
T Consensus 4 ~LD~~l~gGi~~g~~~li~G~~G~GKt~~~ 33 (224)
T TIGR03880 4 GLDEMLGGGFPEGHVIVVIGEYGTGKTTFS 33 (224)
T ss_pred hhHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 4677775 53 567777999999998653
No 303
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=39.32 E-value=13 Score=32.52 Aligned_cols=16 Identities=31% Similarity=0.549 Sum_probs=13.4
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
.|.-+|+.|||||+..
T Consensus 2 iI~i~G~~GSGKstia 17 (171)
T TIGR02173 2 IITISGPPGSGKTTVA 17 (171)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3778999999998765
No 304
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=39.18 E-value=19 Score=38.00 Aligned_cols=42 Identities=31% Similarity=0.378 Sum_probs=27.3
Q ss_pred eeceEeCCCCCchhhhccchHHHHHHHhcCcc-eEEEeeccCCCCceeeec
Q psy4062 137 LFDRVYGPSESNQDVYDGSTKDIIASLLEGYN-CSVFVYGATGAGKTHTML 186 (409)
Q Consensus 137 ~FD~VF~~~asQ~eVf~~~~~plV~~vl~G~N-~tI~aYGqTGSGKTyTm~ 186 (409)
.||.|.++ +.+ ...+-..+-.|.- ..++-||+.|+|||.+..
T Consensus 12 ~~~divGq----~~i----~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~ 54 (472)
T PRK14962 12 TFSEVVGQ----DHV----KKLIINALKKNSISHAYIFAGPRGTGKTTVAR 54 (472)
T ss_pred CHHHccCc----HHH----HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHH
Confidence 47777764 433 3334444445543 458999999999998863
No 305
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=39.11 E-value=17 Score=32.70 Aligned_cols=21 Identities=29% Similarity=0.442 Sum_probs=16.8
Q ss_pred hcCcceEEEeeccCCCCceee
Q psy4062 164 LEGYNCSVFVYGATGAGKTHT 184 (409)
Q Consensus 164 l~G~N~tI~aYGqTGSGKTyT 184 (409)
+..++..|+-+|.+||||+..
T Consensus 18 ~a~~~~pVlI~GE~GtGK~~l 38 (168)
T PF00158_consen 18 AASSDLPVLITGETGTGKELL 38 (168)
T ss_dssp HTTSTS-EEEECSTTSSHHHH
T ss_pred HhCCCCCEEEEcCCCCcHHHH
Confidence 347889999999999999754
No 306
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=39.10 E-value=11 Score=34.42 Aligned_cols=15 Identities=33% Similarity=0.587 Sum_probs=12.6
Q ss_pred EEeeccCCCCceeee
Q psy4062 171 VFVYGATGAGKTHTM 185 (409)
Q Consensus 171 I~aYGqTGSGKTyTm 185 (409)
|.--|.+|||||+.+
T Consensus 2 igi~G~~GsGKSTl~ 16 (198)
T cd02023 2 IGIAGGSGSGKTTVA 16 (198)
T ss_pred EEEECCCCCCHHHHH
Confidence 455799999999886
No 307
>PRK10689 transcription-repair coupling factor; Provisional
Probab=39.06 E-value=20 Score=42.20 Aligned_cols=39 Identities=15% Similarity=0.248 Sum_probs=23.5
Q ss_pred CCCCCchhhhccchHHHHHHHhcCcceEEEeeccCCCCceeee
Q psy4062 143 GPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 143 ~~~asQ~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
.+...|.+.+..+.. .+-.+...-++++|+||||||-+.
T Consensus 600 ~~T~~Q~~aI~~il~----d~~~~~~~d~Ll~a~TGsGKT~va 638 (1147)
T PRK10689 600 ETTPDQAQAINAVLS----DMCQPLAMDRLVCGDVGFGKTEVA 638 (1147)
T ss_pred CCCHHHHHHHHHHHH----HhhcCCCCCEEEEcCCCcCHHHHH
Confidence 445556655543322 222333445799999999999643
No 308
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.94 E-value=17 Score=36.59 Aligned_cols=29 Identities=17% Similarity=0.373 Sum_probs=20.8
Q ss_pred HHHHHHHhcCc-ceEEEeeccCCCCceeee
Q psy4062 157 KDIIASLLEGY-NCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 157 ~plV~~vl~G~-N~tI~aYGqTGSGKTyTm 185 (409)
+.+.+.+-.|. ...++-||+.|+|||++.
T Consensus 27 ~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a 56 (367)
T PRK14970 27 NTLLNAIENNHLAQALLFCGPRGVGKTTCA 56 (367)
T ss_pred HHHHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 44444455564 447888999999999776
No 309
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=38.87 E-value=16 Score=36.36 Aligned_cols=15 Identities=40% Similarity=0.860 Sum_probs=13.1
Q ss_pred EEEeeccCCCCceee
Q psy4062 170 SVFVYGATGAGKTHT 184 (409)
Q Consensus 170 tI~aYGqTGSGKTyT 184 (409)
.|+-.|+||||||--
T Consensus 6 ii~I~GpTasGKS~L 20 (300)
T PRK14729 6 IVFIFGPTAVGKSNI 20 (300)
T ss_pred EEEEECCCccCHHHH
Confidence 578899999999964
No 310
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=38.84 E-value=21 Score=37.14 Aligned_cols=18 Identities=44% Similarity=0.767 Sum_probs=15.9
Q ss_pred eEEEeeccCCCCceeeec
Q psy4062 169 CSVFVYGATGAGKTHTML 186 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm~ 186 (409)
.-++..|.||||||.++.
T Consensus 45 ~h~lvig~tgSGKt~~~v 62 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFV 62 (469)
T ss_pred eEEEEEeCCCCCccceee
Confidence 568999999999999884
No 311
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=38.84 E-value=15 Score=35.97 Aligned_cols=20 Identities=25% Similarity=0.411 Sum_probs=17.6
Q ss_pred CcceEEEeeccCCCCceeee
Q psy4062 166 GYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 166 G~N~tI~aYGqTGSGKTyTm 185 (409)
.-+.+|.-+|+=|||||+-|
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l 37 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFL 37 (325)
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 45778899999999999988
No 312
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=38.65 E-value=21 Score=36.06 Aligned_cols=46 Identities=24% Similarity=0.467 Sum_probs=34.0
Q ss_pred eceEeCCCCCchhhhccchHHHHHHHh-cCcceEEEeeccCCCCceeee
Q psy4062 138 FDRVYGPSESNQDVYDGSTKDIIASLL-EGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 138 FD~VF~~~asQ~eVf~~~~~plV~~vl-~G~N~tI~aYGqTGSGKTyTm 185 (409)
|-+|=.++.++.+-=.++...+|+.++ +|+. +|.||..|.|||+.+
T Consensus 60 f~~v~a~~~~~~eWdrs~~P~lId~~fr~g~~--~~~~gdsg~GKttll 106 (402)
T COG3598 60 FIQVQAEAMRLSEWDRSNSPQLIDEFFRKGYV--SILYGDSGVGKTTLL 106 (402)
T ss_pred eeEehhhhcChhhcCcccChhhhhHHhhcCee--EEEecCCcccHhHHH
Confidence 447777776666655566677787765 5665 488999999999876
No 313
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=38.64 E-value=12 Score=41.73 Aligned_cols=18 Identities=39% Similarity=0.482 Sum_probs=15.6
Q ss_pred eEEEeeccCCCCceeeec
Q psy4062 169 CSVFVYGATGAGKTHTML 186 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm~ 186 (409)
..|.-.|++|+|||.|+.
T Consensus 186 ~Vi~lVGpnGvGKTTTia 203 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTA 203 (767)
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 467789999999999984
No 314
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=38.56 E-value=15 Score=40.27 Aligned_cols=17 Identities=29% Similarity=0.640 Sum_probs=14.9
Q ss_pred EEEeeccCCCCceeeec
Q psy4062 170 SVFVYGATGAGKTHTML 186 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm~ 186 (409)
.++-||++|+|||.++.
T Consensus 112 illL~GP~GsGKTTl~~ 128 (637)
T TIGR00602 112 ILLITGPSGCGKSTTIK 128 (637)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47889999999999874
No 315
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=38.45 E-value=23 Score=30.46 Aligned_cols=18 Identities=33% Similarity=0.445 Sum_probs=15.4
Q ss_pred eEEEeeccCCCCceeeec
Q psy4062 169 CSVFVYGATGAGKTHTML 186 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm~ 186 (409)
..|+-+|.-|||||+-.-
T Consensus 16 ~vi~L~GdLGaGKTtf~r 33 (123)
T PF02367_consen 16 DVILLSGDLGAGKTTFVR 33 (123)
T ss_dssp EEEEEEESTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 568899999999998764
No 316
>PRK14531 adenylate kinase; Provisional
Probab=38.39 E-value=14 Score=33.38 Aligned_cols=16 Identities=31% Similarity=0.571 Sum_probs=13.4
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
-|+.+|..|||||..-
T Consensus 4 ~i~i~G~pGsGKsT~~ 19 (183)
T PRK14531 4 RLLFLGPPGAGKGTQA 19 (183)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3788999999998763
No 317
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=38.35 E-value=19 Score=40.47 Aligned_cols=18 Identities=39% Similarity=0.486 Sum_probs=15.7
Q ss_pred ceEEEeeccCCCCceeee
Q psy4062 168 NCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 168 N~tI~aYGqTGSGKTyTm 185 (409)
.+.++-+|+||+|||+..
T Consensus 488 ~~~~Lf~GP~GvGKT~lA 505 (758)
T PRK11034 488 VGSFLFAGPTGVGKTEVT 505 (758)
T ss_pred cceEEEECCCCCCHHHHH
Confidence 367999999999999876
No 318
>KOG2373|consensus
Probab=38.34 E-value=27 Score=35.62 Aligned_cols=29 Identities=31% Similarity=0.492 Sum_probs=21.6
Q ss_pred HHHHHHHhcCcc---eEEEeeccCCCCceeeec
Q psy4062 157 KDIIASLLEGYN---CSVFVYGATGAGKTHTML 186 (409)
Q Consensus 157 ~plV~~vl~G~N---~tI~aYGqTGSGKTyTm~ 186 (409)
-|.+...+.|.- -||| -|+||||||.-|.
T Consensus 260 FpvLNk~LkGhR~GElTvl-TGpTGsGKTTFls 291 (514)
T KOG2373|consen 260 FPVLNKYLKGHRPGELTVL-TGPTGSGKTTFLS 291 (514)
T ss_pred hhHHHHHhccCCCCceEEE-ecCCCCCceeEeh
Confidence 366777888764 4555 5999999998875
No 319
>PRK09354 recA recombinase A; Provisional
Probab=38.10 E-value=25 Score=35.72 Aligned_cols=32 Identities=25% Similarity=0.319 Sum_probs=25.5
Q ss_pred cchHHHHHHHhc--Cc--ceEEEeeccCCCCceeee
Q psy4062 154 GSTKDIIASLLE--GY--NCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 154 ~~~~plV~~vl~--G~--N~tI~aYGqTGSGKTyTm 185 (409)
.++-+-+|.+|. |+ ...+.-||+.|||||.-.
T Consensus 42 sTGi~~LD~~LG~GGip~G~IteI~G~~GsGKTtLa 77 (349)
T PRK09354 42 STGSLALDIALGIGGLPRGRIVEIYGPESSGKTTLA 77 (349)
T ss_pred cCCcHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHH
Confidence 367888999998 44 456788999999999754
No 320
>PRK04040 adenylate kinase; Provisional
Probab=38.07 E-value=14 Score=33.90 Aligned_cols=16 Identities=44% Similarity=0.673 Sum_probs=13.9
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
.|+.+|..|||||+..
T Consensus 4 ~i~v~G~pG~GKtt~~ 19 (188)
T PRK04040 4 VVVVTGVPGVGKTTVL 19 (188)
T ss_pred EEEEEeCCCCCHHHHH
Confidence 4788999999999866
No 321
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=38.03 E-value=13 Score=33.80 Aligned_cols=15 Identities=33% Similarity=0.554 Sum_probs=12.7
Q ss_pred EEeeccCCCCceeee
Q psy4062 171 VFVYGATGAGKTHTM 185 (409)
Q Consensus 171 I~aYGqTGSGKTyTm 185 (409)
|.-.|.+|||||+.-
T Consensus 2 IgI~G~sgSGKTTla 16 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLA 16 (194)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 566899999999875
No 322
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=38.01 E-value=23 Score=37.58 Aligned_cols=31 Identities=23% Similarity=0.310 Sum_probs=24.0
Q ss_pred chHHHHHHHhcC---cceEEEeeccCCCCceeee
Q psy4062 155 STKDIIASLLEG---YNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 155 ~~~plV~~vl~G---~N~tI~aYGqTGSGKTyTm 185 (409)
++-+-+|.++.| ....++.+|.+|+|||.-.
T Consensus 15 TGI~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~ 48 (509)
T PRK09302 15 TGIEGFDDITHGGLPKGRPTLVSGTAGTGKTLFA 48 (509)
T ss_pred CCchhHHHhhcCCCCCCcEEEEEeCCCCCHHHHH
Confidence 445667888864 4688899999999998644
No 323
>KOG0348|consensus
Probab=37.91 E-value=19 Score=38.47 Aligned_cols=26 Identities=46% Similarity=0.581 Sum_probs=19.4
Q ss_pred HHHHHHHhcCcceEEEeeccCCCCceee
Q psy4062 157 KDIIASLLEGYNCSVFVYGATGAGKTHT 184 (409)
Q Consensus 157 ~plV~~vl~G~N~tI~aYGqTGSGKTyT 184 (409)
+..|..+|+|.++.|- -|||||||-.
T Consensus 165 kq~IP~lL~grD~lV~--aQTGSGKTLA 190 (708)
T KOG0348|consen 165 KQAIPVLLEGRDALVR--AQTGSGKTLA 190 (708)
T ss_pred hcchhhhhcCcceEEE--cCCCCcccHH
Confidence 3345667889998554 5999999964
No 324
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=37.87 E-value=24 Score=35.69 Aligned_cols=32 Identities=25% Similarity=0.445 Sum_probs=24.5
Q ss_pred cchHHHHHHHhcC-c--ceEEEeeccCCCCceeee
Q psy4062 154 GSTKDIIASLLEG-Y--NCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 154 ~~~~plV~~vl~G-~--N~tI~aYGqTGSGKTyTm 185 (409)
.++-+-+|.+|.| + .....-||..|||||.-.
T Consensus 109 sTG~~~LD~lLgGGi~~G~ItEI~G~~GsGKTql~ 143 (344)
T PLN03187 109 TTGSQALDELLGGGIETRCITEAFGEFRSGKTQLA 143 (344)
T ss_pred cCCcHhHHhhcCCCCCCCeEEEEecCCCCChhHHH
Confidence 3567889999985 2 455668999999999743
No 325
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=37.83 E-value=24 Score=35.34 Aligned_cols=32 Identities=22% Similarity=0.289 Sum_probs=25.3
Q ss_pred cchHHHHHHHhc--Ccc--eEEEeeccCCCCceeee
Q psy4062 154 GSTKDIIASLLE--GYN--CSVFVYGATGAGKTHTM 185 (409)
Q Consensus 154 ~~~~plV~~vl~--G~N--~tI~aYGqTGSGKTyTm 185 (409)
.++-+-+|.+|. |+. ..+.-||+.|||||...
T Consensus 37 ~TGi~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLa 72 (321)
T TIGR02012 37 STGSLSLDLALGVGGLPRGRIIEIYGPESSGKTTLA 72 (321)
T ss_pred cCCCHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHH
Confidence 356788999986 663 56788999999999764
No 326
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=37.70 E-value=23 Score=41.37 Aligned_cols=26 Identities=42% Similarity=0.784 Sum_probs=20.6
Q ss_pred HHHHHHHhcCcceEEEeeccCCCCceee
Q psy4062 157 KDIIASLLEGYNCSVFVYGATGAGKTHT 184 (409)
Q Consensus 157 ~plV~~vl~G~N~tI~aYGqTGSGKTyT 184 (409)
..+|..++.|.|+ ++.-+||+|||.+
T Consensus 466 ~eaI~aiL~GrDV--LVimPTGSGKSLc 491 (1195)
T PLN03137 466 REIINATMSGYDV--FVLMPTGGGKSLT 491 (1195)
T ss_pred HHHHHHHHcCCCE--EEEcCCCccHHHH
Confidence 4467788999996 4455999999986
No 327
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=37.57 E-value=17 Score=38.55 Aligned_cols=31 Identities=23% Similarity=0.522 Sum_probs=22.1
Q ss_pred HHHHHHHhcCcc------eEEEeeccCCCCceeeecC
Q psy4062 157 KDIIASLLEGYN------CSVFVYGATGAGKTHTMLG 187 (409)
Q Consensus 157 ~plV~~vl~G~N------~tI~aYGqTGSGKTyTm~G 187 (409)
+.=+..+++|.+ -.++-+|++|||||+.|-+
T Consensus 15 e~~l~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr~ 51 (504)
T TIGR03238 15 QTDLERILVKFNKELPSSSLLFLCGSSGDGKSEILAE 51 (504)
T ss_pred HHHHHHHHhCCceeecCCCEEEEECCCCCCHHHHHhc
Confidence 333455677744 3467799999999998863
No 328
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=37.47 E-value=20 Score=35.62 Aligned_cols=28 Identities=21% Similarity=0.373 Sum_probs=19.9
Q ss_pred HHHHHHhcCc-ceEEEeeccCCCCceeee
Q psy4062 158 DIIASLLEGY-NCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 158 plV~~vl~G~-N~tI~aYGqTGSGKTyTm 185 (409)
.+...+-.|. ...++-||+.|+|||.+.
T Consensus 25 ~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a 53 (355)
T TIGR02397 25 TLKNAIKNGRIAHAYLFSGPRGTGKTSIA 53 (355)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 3344444554 457899999999999776
No 329
>KOG0652|consensus
Probab=37.46 E-value=16 Score=35.83 Aligned_cols=16 Identities=44% Similarity=0.758 Sum_probs=13.3
Q ss_pred eEEEeeccCCCCceee
Q psy4062 169 CSVFVYGATGAGKTHT 184 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyT 184 (409)
-.++.||+.|+|||..
T Consensus 206 KGvLmYGPPGTGKTlm 221 (424)
T KOG0652|consen 206 KGVLMYGPPGTGKTLM 221 (424)
T ss_pred CceEeeCCCCCcHHHH
Confidence 3589999999999753
No 330
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=37.25 E-value=20 Score=37.31 Aligned_cols=30 Identities=23% Similarity=0.361 Sum_probs=25.7
Q ss_pred HHHHHHHhcCcceEEEeeccCCCCceeeec
Q psy4062 157 KDIIASLLEGYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 157 ~plV~~vl~G~N~tI~aYGqTGSGKTyTm~ 186 (409)
..-++.+-+|....-|..|.-||||||.+.
T Consensus 38 ~~~l~~v~~G~s~~kfi~G~YGsGKTf~l~ 67 (416)
T PF10923_consen 38 DRDLDRVADGGSSFKFIRGEYGSGKTFFLR 67 (416)
T ss_pred HHHHHHHhCCCCeEEEEEeCCCCcHHHHHH
Confidence 334677889999999999999999999883
No 331
>KOG0727|consensus
Probab=37.23 E-value=32 Score=33.60 Aligned_cols=48 Identities=23% Similarity=0.393 Sum_probs=29.8
Q ss_pred eeceEeCCCCCchhhhccchHHHHHHHh---cCcc--eEEEeeccCCCCceee
Q psy4062 137 LFDRVYGPSESNQDVYDGSTKDIIASLL---EGYN--CSVFVYGATGAGKTHT 184 (409)
Q Consensus 137 ~FD~VF~~~asQ~eVf~~~~~plV~~vl---~G~N--~tI~aYGqTGSGKTyT 184 (409)
.+..|=+-+..-++|-+.+-.|+...=+ -|.+ -.|+.||+.|+|||--
T Consensus 153 sy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml 205 (408)
T KOG0727|consen 153 SYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTML 205 (408)
T ss_pred cccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHH
Confidence 3444555555556666665566665533 1443 4589999999999743
No 332
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=37.08 E-value=15 Score=38.10 Aligned_cols=18 Identities=33% Similarity=0.576 Sum_probs=15.7
Q ss_pred eEEEeeccCCCCceeeec
Q psy4062 169 CSVFVYGATGAGKTHTML 186 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm~ 186 (409)
..|+-+|+||+|||+..-
T Consensus 117 ~~iLL~GP~GsGKT~lAr 134 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLAQ 134 (413)
T ss_pred ceEEEECCCCcCHHHHHH
Confidence 579999999999998763
No 333
>PRK13531 regulatory ATPase RavA; Provisional
Probab=37.08 E-value=19 Score=38.26 Aligned_cols=29 Identities=24% Similarity=0.410 Sum_probs=21.2
Q ss_pred chHHHHHHHhcCcceEEEeeccCCCCceeee
Q psy4062 155 STKDIIASLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 155 ~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
++.-++..++.|-+ |+-+|++|+|||+..
T Consensus 28 vI~lll~aalag~h--VLL~GpPGTGKT~LA 56 (498)
T PRK13531 28 AIRLCLLAALSGES--VFLLGPPGIAKSLIA 56 (498)
T ss_pred HHHHHHHHHccCCC--EEEECCCChhHHHHH
Confidence 34555556666655 588999999999876
No 334
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=37.07 E-value=23 Score=40.14 Aligned_cols=27 Identities=26% Similarity=0.452 Sum_probs=20.0
Q ss_pred HHHHHHHhcCcceEEEeeccCCCCceeee
Q psy4062 157 KDIIASLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 157 ~plV~~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
..+++.+-++- .++..|+||||||..+
T Consensus 11 ~~i~~~l~~~~--~vvv~A~TGSGKTt~~ 37 (812)
T PRK11664 11 PELLTALKTAP--QVLLKAPTGAGKSTWL 37 (812)
T ss_pred HHHHHHHHhCC--CEEEEcCCCCCHHHHH
Confidence 55666665544 4678999999999876
No 335
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=36.92 E-value=20 Score=41.15 Aligned_cols=29 Identities=28% Similarity=0.343 Sum_probs=19.7
Q ss_pred HHHHHHHhcCcceEEEeeccCCCCceeee
Q psy4062 157 KDIIASLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 157 ~plV~~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
.++..++-.+...-++..|+||||||-+.
T Consensus 461 ~~I~~d~~~~~~~d~Ll~adTGsGKT~va 489 (926)
T TIGR00580 461 EEIKADMESPRPMDRLVCGDVGFGKTEVA 489 (926)
T ss_pred HHHHhhhcccCcCCEEEECCCCccHHHHH
Confidence 33444444444455789999999999765
No 336
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=36.83 E-value=15 Score=32.63 Aligned_cols=16 Identities=31% Similarity=0.681 Sum_probs=13.5
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
.|+..|..|||||+..
T Consensus 5 ii~i~G~~GsGKsTl~ 20 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQC 20 (188)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677999999999875
No 337
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).
Probab=36.65 E-value=13 Score=41.52 Aligned_cols=18 Identities=33% Similarity=0.660 Sum_probs=16.6
Q ss_pred ceEEEeeccCCCCceeee
Q psy4062 168 NCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 168 N~tI~aYGqTGSGKTyTm 185 (409)
|.-++..|.||||||++|
T Consensus 434 ~~n~~I~G~tGsGKS~~~ 451 (785)
T TIGR00929 434 LGHTLIFGPTGSGKTTLL 451 (785)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 777899999999999988
No 338
>PRK06762 hypothetical protein; Provisional
Probab=36.62 E-value=17 Score=32.00 Aligned_cols=15 Identities=33% Similarity=0.671 Sum_probs=12.3
Q ss_pred EEEeeccCCCCceee
Q psy4062 170 SVFVYGATGAGKTHT 184 (409)
Q Consensus 170 tI~aYGqTGSGKTyT 184 (409)
.|.-.|..|||||+.
T Consensus 4 li~i~G~~GsGKST~ 18 (166)
T PRK06762 4 LIIIRGNSGSGKTTI 18 (166)
T ss_pred EEEEECCCCCCHHHH
Confidence 466789999999874
No 339
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=36.13 E-value=19 Score=31.91 Aligned_cols=16 Identities=25% Similarity=0.598 Sum_probs=13.4
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
.|...|++|||||..+
T Consensus 3 ii~l~G~~GsGKsTl~ 18 (180)
T TIGR03263 3 LIVISGPSGVGKSTLV 18 (180)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677999999999854
No 340
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=36.11 E-value=24 Score=36.27 Aligned_cols=40 Identities=25% Similarity=0.374 Sum_probs=24.6
Q ss_pred eeceEeCCCCCchhhhccchHHHHHHHh-cCcc-eEEEeeccCCCCceeee
Q psy4062 137 LFDRVYGPSESNQDVYDGSTKDIIASLL-EGYN-CSVFVYGATGAGKTHTM 185 (409)
Q Consensus 137 ~FD~VF~~~asQ~eVf~~~~~plV~~vl-~G~N-~tI~aYGqTGSGKTyTm 185 (409)
.||.|.+ |+.+ .+ .+.+++ .|.- -.++-||+.|+|||...
T Consensus 14 ~~~eiiG----q~~~----~~-~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A 55 (397)
T PRK14955 14 KFADITA----QEHI----TR-TIQNSLRMGRVGHGYIFSGLRGVGKTTAA 55 (397)
T ss_pred cHhhccC----hHHH----HH-HHHHHHHhCCcceeEEEECCCCCCHHHHH
Confidence 4777776 3333 22 344444 4543 34777999999999654
No 341
>PRK14532 adenylate kinase; Provisional
Probab=36.10 E-value=17 Score=32.66 Aligned_cols=16 Identities=25% Similarity=0.588 Sum_probs=13.3
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
.|+..|..|||||..-
T Consensus 2 ~i~~~G~pGsGKsT~a 17 (188)
T PRK14532 2 NLILFGPPAAGKGTQA 17 (188)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3788999999998753
No 342
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.92 E-value=17 Score=39.49 Aligned_cols=41 Identities=29% Similarity=0.476 Sum_probs=26.4
Q ss_pred eeceEeCCCCCchhhhccchHHHHHHHhcCc-ceEEEeeccCCCCceeee
Q psy4062 137 LFDRVYGPSESNQDVYDGSTKDIIASLLEGY-NCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 137 ~FD~VF~~~asQ~eVf~~~~~plV~~vl~G~-N~tI~aYGqTGSGKTyTm 185 (409)
.||.|.+ |+.+.+ .|...+-.|. .-.++-||+.|+|||.+.
T Consensus 11 ~f~eivG----q~~i~~----~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A 52 (584)
T PRK14952 11 TFAEVVG----QEHVTE----PLSSALDAGRINHAYLFSGPRGCGKTSSA 52 (584)
T ss_pred cHHHhcC----cHHHHH----HHHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 4777765 444433 3333344553 446789999999999876
No 343
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=35.89 E-value=18 Score=39.46 Aligned_cols=27 Identities=26% Similarity=0.420 Sum_probs=19.5
Q ss_pred HHHHHhcCc-ceEEEeeccCCCCceeee
Q psy4062 159 IIASLLEGY-NCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 159 lV~~vl~G~-N~tI~aYGqTGSGKTyTm 185 (409)
|...+-.|. .-.++-||+.|+|||.+.
T Consensus 36 L~~~~~~gri~ha~L~~Gp~GvGKTt~A 63 (598)
T PRK09111 36 LTNAFETGRIAQAFMLTGVRGVGKTTTA 63 (598)
T ss_pred HHHHHHcCCCCceEEEECCCCCCHHHHH
Confidence 334444564 346888999999999876
No 344
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=35.84 E-value=14 Score=38.56 Aligned_cols=18 Identities=44% Similarity=0.695 Sum_probs=15.1
Q ss_pred eEEEeeccCCCCceeeec
Q psy4062 169 CSVFVYGATGAGKTHTML 186 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm~ 186 (409)
..++..|++|+|||.|+.
T Consensus 224 ~vi~lvGptGvGKTTtaa 241 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIA 241 (432)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457778999999999974
No 345
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=35.81 E-value=20 Score=41.39 Aligned_cols=28 Identities=29% Similarity=0.488 Sum_probs=21.7
Q ss_pred HHHHHHhcCcceEEEeeccCCCCceeeec
Q psy4062 158 DIIASLLEGYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 158 plV~~vl~G~N~tI~aYGqTGSGKTyTm~ 186 (409)
..|..++.+.+.+ +..|..|+||||+|-
T Consensus 353 ~Av~~il~s~~v~-vv~G~AGTGKTT~l~ 380 (988)
T PRK13889 353 DALAHVTDGRDLG-VVVGYAGTGKSAMLG 380 (988)
T ss_pred HHHHHHhcCCCeE-EEEeCCCCCHHHHHH
Confidence 3566778777654 589999999999874
No 346
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=35.74 E-value=21 Score=39.76 Aligned_cols=17 Identities=41% Similarity=0.536 Sum_probs=14.7
Q ss_pred eEEEeeccCCCCceeee
Q psy4062 169 CSVFVYGATGAGKTHTM 185 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm 185 (409)
+.++-+|+||+|||++.
T Consensus 485 ~~~lf~Gp~GvGKT~lA 501 (731)
T TIGR02639 485 GSFLFTGPTGVGKTELA 501 (731)
T ss_pred eeEEEECCCCccHHHHH
Confidence 56889999999999765
No 347
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=35.66 E-value=13 Score=30.87 Aligned_cols=16 Identities=19% Similarity=0.515 Sum_probs=13.4
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
-|..+|.+|||||..|
T Consensus 3 ki~~~G~~~~GKstl~ 18 (161)
T TIGR00231 3 KIVIVGDPNVGKSTLL 18 (161)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999865
No 348
>KOG0745|consensus
Probab=35.54 E-value=17 Score=38.00 Aligned_cols=17 Identities=41% Similarity=0.661 Sum_probs=13.9
Q ss_pred eEEEeeccCCCCceeee
Q psy4062 169 CSVFVYGATGAGKTHTM 185 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm 185 (409)
+.|+..|+||||||+--
T Consensus 227 SNvLllGPtGsGKTlla 243 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLA 243 (564)
T ss_pred ccEEEECCCCCchhHHH
Confidence 45788999999999743
No 349
>PTZ00035 Rad51 protein; Provisional
Probab=34.86 E-value=32 Score=34.66 Aligned_cols=32 Identities=22% Similarity=0.316 Sum_probs=25.3
Q ss_pred cchHHHHHHHhcC-c--ceEEEeeccCCCCceeee
Q psy4062 154 GSTKDIIASLLEG-Y--NCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 154 ~~~~plV~~vl~G-~--N~tI~aYGqTGSGKTyTm 185 (409)
.++-+-+|.+|.| + ...+.-||..|||||.-+
T Consensus 101 sTG~~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~ 135 (337)
T PTZ00035 101 TTGSTQLDKLLGGGIETGSITELFGEFRTGKTQLC 135 (337)
T ss_pred cCCcHHHHHHhCCCCCCCeEEEEECCCCCchhHHH
Confidence 3567889999975 3 556778999999999765
No 350
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=34.84 E-value=26 Score=36.68 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=18.3
Q ss_pred HHHhcCcceEEEeeccCCCCceeeecC
Q psy4062 161 ASLLEGYNCSVFVYGATGAGKTHTMLG 187 (409)
Q Consensus 161 ~~vl~G~N~tI~aYGqTGSGKTyTm~G 187 (409)
.-+=.++|. +-.|++|+||||.-.+
T Consensus 204 ~fve~~~Nl--i~lGp~GTGKThla~~ 228 (449)
T TIGR02688 204 PLVEPNYNL--IELGPKGTGKSYIYNN 228 (449)
T ss_pred HHHhcCCcE--EEECCCCCCHHHHHHH
Confidence 334456665 6679999999998764
No 351
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=34.80 E-value=19 Score=31.00 Aligned_cols=15 Identities=27% Similarity=0.682 Sum_probs=11.5
Q ss_pred EEeeccCCCCceeee
Q psy4062 171 VFVYGATGAGKTHTM 185 (409)
Q Consensus 171 I~aYGqTGSGKTyTm 185 (409)
|.-.|++|||||.-+
T Consensus 2 i~i~GpsGsGKstl~ 16 (137)
T cd00071 2 IVLSGPSGVGKSTLL 16 (137)
T ss_pred EEEECCCCCCHHHHH
Confidence 455799999999633
No 352
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=34.75 E-value=19 Score=34.26 Aligned_cols=15 Identities=40% Similarity=0.645 Sum_probs=11.8
Q ss_pred EEeeccCCCCceeee
Q psy4062 171 VFVYGATGAGKTHTM 185 (409)
Q Consensus 171 I~aYGqTGSGKTyTm 185 (409)
++-+|+||+|||..-
T Consensus 4 ~~i~GpT~tGKt~~a 18 (233)
T PF01745_consen 4 YLIVGPTGTGKTALA 18 (233)
T ss_dssp EEEE-STTSSHHHHH
T ss_pred EEEECCCCCChhHHH
Confidence 567999999999874
No 353
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=34.34 E-value=22 Score=39.85 Aligned_cols=28 Identities=18% Similarity=0.298 Sum_probs=20.7
Q ss_pred HHHHHhcCcceEEEeeccCCCCceeeecC
Q psy4062 159 IIASLLEGYNCSVFVYGATGAGKTHTMLG 187 (409)
Q Consensus 159 lV~~vl~G~N~tI~aYGqTGSGKTyTm~G 187 (409)
.|..++.+ +..++..|..|+||||+|-+
T Consensus 360 Av~~i~~s-~~~~il~G~aGTGKTtll~~ 387 (744)
T TIGR02768 360 AVRHVTGS-GDIAVVVGRAGTGKSTMLKA 387 (744)
T ss_pred HHHHHhcC-CCEEEEEecCCCCHHHHHHH
Confidence 45556655 34567899999999999864
No 354
>PRK06851 hypothetical protein; Provisional
Probab=34.25 E-value=20 Score=36.70 Aligned_cols=28 Identities=29% Similarity=0.520 Sum_probs=22.8
Q ss_pred HHHHHhcCcceEEEeeccCCCCceeeec
Q psy4062 159 IIASLLEGYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 159 lV~~vl~G~N~tI~aYGqTGSGKTyTm~ 186 (409)
+.+.+++|.+-.++--|..|+|||++|-
T Consensus 21 ~~~~~~~~~~~~~il~G~pGtGKStl~~ 48 (367)
T PRK06851 21 LYDSIIDGANRIFILKGGPGTGKSTLMK 48 (367)
T ss_pred hhhhhccccceEEEEECCCCCCHHHHHH
Confidence 4455667788889999999999999883
No 355
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=33.95 E-value=22 Score=33.93 Aligned_cols=15 Identities=33% Similarity=0.767 Sum_probs=12.1
Q ss_pred EEeeccCCCCceeee
Q psy4062 171 VFVYGATGAGKTHTM 185 (409)
Q Consensus 171 I~aYGqTGSGKTyTm 185 (409)
+.-.|++|||||.-+
T Consensus 31 v~iiGpSGSGKSTlL 45 (240)
T COG1126 31 VVIIGPSGSGKSTLL 45 (240)
T ss_pred EEEECCCCCCHHHHH
Confidence 445899999999765
No 356
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=33.81 E-value=19 Score=35.82 Aligned_cols=15 Identities=33% Similarity=0.503 Sum_probs=12.6
Q ss_pred EEeeccCCCCceeee
Q psy4062 171 VFVYGATGAGKTHTM 185 (409)
Q Consensus 171 I~aYGqTGSGKTyTm 185 (409)
++..++||||||...
T Consensus 2 vvi~apTGsGKT~~~ 16 (358)
T TIGR01587 2 LVIEAPTGYGKTEAA 16 (358)
T ss_pred EEEEeCCCCCHHHHH
Confidence 577899999999764
No 357
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=33.78 E-value=17 Score=31.82 Aligned_cols=15 Identities=27% Similarity=0.687 Sum_probs=12.1
Q ss_pred EEeeccCCCCceeee
Q psy4062 171 VFVYGATGAGKTHTM 185 (409)
Q Consensus 171 I~aYGqTGSGKTyTm 185 (409)
|+-.|.+|||||+..
T Consensus 2 i~i~G~~GsGKSTla 16 (149)
T cd02027 2 IWLTGLSGSGKSTIA 16 (149)
T ss_pred EEEEcCCCCCHHHHH
Confidence 677899999997643
No 358
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=33.75 E-value=22 Score=34.02 Aligned_cols=17 Identities=29% Similarity=0.606 Sum_probs=14.5
Q ss_pred eEEEeeccCCCCceeee
Q psy4062 169 CSVFVYGATGAGKTHTM 185 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm 185 (409)
-.++.+|++|||||.-+
T Consensus 31 e~~~i~G~nGsGKSTL~ 47 (235)
T COG1122 31 ERVLLIGPNGSGKSTLL 47 (235)
T ss_pred CEEEEECCCCCCHHHHH
Confidence 46788999999999765
No 359
>PRK03839 putative kinase; Provisional
Probab=33.73 E-value=18 Score=32.35 Aligned_cols=14 Identities=36% Similarity=0.667 Sum_probs=12.1
Q ss_pred EEeeccCCCCceee
Q psy4062 171 VFVYGATGAGKTHT 184 (409)
Q Consensus 171 I~aYGqTGSGKTyT 184 (409)
|+-.|..|||||+.
T Consensus 3 I~l~G~pGsGKsT~ 16 (180)
T PRK03839 3 IAITGTPGVGKTTV 16 (180)
T ss_pred EEEECCCCCCHHHH
Confidence 67789999999875
No 360
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=33.71 E-value=25 Score=38.50 Aligned_cols=42 Identities=19% Similarity=0.418 Sum_probs=30.1
Q ss_pred EeeceEeCCCCCchhhhccchHHHHHHHhcCcceEEEeeccCCCCceeee
Q psy4062 136 FLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 136 F~FD~VF~~~asQ~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
|.|..|.+ |+++ ...++-.++++..+.|+-+|..|+|||...
T Consensus 1 ~pf~~ivG----q~~~----~~al~~~av~~~~g~vli~G~~GtgKs~la 42 (633)
T TIGR02442 1 FPFTAIVG----QEDL----KLALLLNAVDPRIGGVLIRGEKGTAKSTAA 42 (633)
T ss_pred CCcchhcC----hHHH----HHHHHHHhhCCCCCeEEEEcCCCCcHHHHH
Confidence 45666766 4443 355666677766677999999999998765
No 361
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=33.65 E-value=22 Score=37.95 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=18.4
Q ss_pred HHhcCc-ceEEEeeccCCCCceeee
Q psy4062 162 SLLEGY-NCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 162 ~vl~G~-N~tI~aYGqTGSGKTyTm 185 (409)
.+..|. ...++-||+.|+|||.+.
T Consensus 36 ai~~~ri~~a~Lf~Gp~G~GKTT~A 60 (507)
T PRK06645 36 TILNDRLAGGYLLTGIRGVGKTTSA 60 (507)
T ss_pred HHHcCCCCceEEEECCCCCCHHHHH
Confidence 344554 357899999999999876
No 362
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=33.57 E-value=15 Score=37.18 Aligned_cols=15 Identities=33% Similarity=0.740 Sum_probs=13.1
Q ss_pred EEeeccCCCCceeee
Q psy4062 171 VFVYGATGAGKTHTM 185 (409)
Q Consensus 171 I~aYGqTGSGKTyTm 185 (409)
+.-.|++|||||.+|
T Consensus 32 ~vllGPSGcGKSTlL 46 (338)
T COG3839 32 VVLLGPSGCGKSTLL 46 (338)
T ss_pred EEEECCCCCCHHHHH
Confidence 455899999999998
No 363
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=33.54 E-value=15 Score=35.79 Aligned_cols=18 Identities=39% Similarity=0.615 Sum_probs=15.4
Q ss_pred eEEEeeccCCCCceeeec
Q psy4062 169 CSVFVYGATGAGKTHTML 186 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm~ 186 (409)
-.+.-+|++|+|||.++.
T Consensus 76 ~~i~~~G~~g~GKTtl~~ 93 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLA 93 (270)
T ss_pred CEEEEECCCCCcHHHHHH
Confidence 467889999999999874
No 364
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=33.52 E-value=22 Score=26.71 Aligned_cols=15 Identities=27% Similarity=0.636 Sum_probs=11.5
Q ss_pred EEeeccCCCCceeee
Q psy4062 171 VFVYGATGAGKTHTM 185 (409)
Q Consensus 171 I~aYGqTGSGKTyTm 185 (409)
|+-.|..|||||..+
T Consensus 2 i~i~G~~gsGKst~~ 16 (69)
T cd02019 2 IAITGGSGSGKSTVA 16 (69)
T ss_pred EEEECCCCCCHHHHH
Confidence 445799999997654
No 365
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=33.51 E-value=16 Score=39.31 Aligned_cols=18 Identities=44% Similarity=0.606 Sum_probs=14.6
Q ss_pred eEEEeeccCCCCceeeec
Q psy4062 169 CSVFVYGATGAGKTHTML 186 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm~ 186 (409)
..|.-.|++|+|||+|+.
T Consensus 351 ~vIaLVGPtGvGKTTtaa 368 (559)
T PRK12727 351 GVIALVGPTGAGKTTTIA 368 (559)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 456667999999999973
No 366
>PRK00300 gmk guanylate kinase; Provisional
Probab=33.34 E-value=23 Score=32.26 Aligned_cols=17 Identities=29% Similarity=0.554 Sum_probs=13.7
Q ss_pred eEEEeeccCCCCceeee
Q psy4062 169 CSVFVYGATGAGKTHTM 185 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm 185 (409)
..|.-.|++|||||..+
T Consensus 6 ~~i~i~G~sGsGKstl~ 22 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLV 22 (205)
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45777999999999654
No 367
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=33.18 E-value=34 Score=30.55 Aligned_cols=27 Identities=22% Similarity=0.475 Sum_probs=21.5
Q ss_pred HHHHHHhc-CcceEEEeeccCCCCceee
Q psy4062 158 DIIASLLE-GYNCSVFVYGATGAGKTHT 184 (409)
Q Consensus 158 plV~~vl~-G~N~tI~aYGqTGSGKTyT 184 (409)
.++..++. .....|+..|..|||||.-
T Consensus 3 ~~~~~~~~~~~~~~ililGl~~sGKTtl 30 (175)
T PF00025_consen 3 SVLSKLKSKKKEIKILILGLDGSGKTTL 30 (175)
T ss_dssp HHHHHCTTTTSEEEEEEEESTTSSHHHH
T ss_pred HHHHHhcccCcEEEEEEECCCccchHHH
Confidence 45666664 6788999999999999964
No 368
>PTZ00014 myosin-A; Provisional
Probab=33.15 E-value=28 Score=39.45 Aligned_cols=29 Identities=28% Similarity=0.434 Sum_probs=22.6
Q ss_pred HHHHHHHh-cCcceEEEeeccCCCCceeee
Q psy4062 157 KDIIASLL-EGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 157 ~plV~~vl-~G~N~tI~aYGqTGSGKTyTm 185 (409)
.....+++ .+.|-||+.-|.+|||||.+.
T Consensus 171 ~~Ay~~m~~~~~~QsIiiSGESGAGKTe~t 200 (821)
T PTZ00014 171 RRALENLHGVKKSQTIIVSGESGAGKTEAT 200 (821)
T ss_pred HHHHHHHHhcCCCceEEEEcCCCCCchHHH
Confidence 33444444 589999999999999999765
No 369
>KOG0344|consensus
Probab=33.13 E-value=25 Score=37.77 Aligned_cols=26 Identities=35% Similarity=0.525 Sum_probs=18.8
Q ss_pred HHHHHHhcCcceEEEeeccCCCCceeee
Q psy4062 158 DIIASLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 158 plV~~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
+.+.-++.+-+ ++|+++||||||+.-
T Consensus 165 ~aipvfl~~r~--~lAcapTGsgKtlaf 190 (593)
T KOG0344|consen 165 QAIPVFLEKRD--VLACAPTGSGKTLAF 190 (593)
T ss_pred hhhhhhhcccc--eEEeccCCCcchhhh
Confidence 34444555555 599999999998775
No 370
>KOG0742|consensus
Probab=33.09 E-value=21 Score=37.17 Aligned_cols=14 Identities=43% Similarity=0.909 Sum_probs=12.4
Q ss_pred eEEEeeccCCCCce
Q psy4062 169 CSVFVYGATGAGKT 182 (409)
Q Consensus 169 ~tI~aYGqTGSGKT 182 (409)
-.|+-||+.|+|||
T Consensus 385 RNilfyGPPGTGKT 398 (630)
T KOG0742|consen 385 RNILFYGPPGTGKT 398 (630)
T ss_pred hheeeeCCCCCCch
Confidence 35899999999997
No 371
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=33.09 E-value=15 Score=37.31 Aligned_cols=14 Identities=36% Similarity=0.681 Sum_probs=12.1
Q ss_pred eeccCCCCceeeec
Q psy4062 173 VYGATGAGKTHTML 186 (409)
Q Consensus 173 aYGqTGSGKTyTm~ 186 (409)
-.|++|||||.+|-
T Consensus 36 lLGPSGcGKTTlLR 49 (352)
T COG3842 36 LLGPSGCGKTTLLR 49 (352)
T ss_pred EECCCCCCHHHHHH
Confidence 47999999999873
No 372
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=32.93 E-value=21 Score=35.59 Aligned_cols=16 Identities=31% Similarity=0.470 Sum_probs=13.8
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
.|+-+|+|+||||...
T Consensus 5 ~i~I~GPTAsGKT~la 20 (308)
T COG0324 5 LIVIAGPTASGKTALA 20 (308)
T ss_pred EEEEECCCCcCHHHHH
Confidence 4788999999999875
No 373
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=32.80 E-value=18 Score=39.73 Aligned_cols=20 Identities=25% Similarity=0.469 Sum_probs=16.5
Q ss_pred ceEEEeeccCCCCceeeecC
Q psy4062 168 NCSVFVYGATGAGKTHTMLG 187 (409)
Q Consensus 168 N~tI~aYGqTGSGKTyTm~G 187 (409)
.+-++..|..|||||.||..
T Consensus 14 ~~~~~V~Ag~GSGKT~~L~~ 33 (664)
T TIGR01074 14 TGPCLVLAGAGSGKTRVITN 33 (664)
T ss_pred CCCEEEEecCCCCHHHHHHH
Confidence 34578888999999999964
No 374
>PRK13721 conjugal transfer ATP-binding protein TraC; Provisional
Probab=32.75 E-value=16 Score=41.55 Aligned_cols=19 Identities=42% Similarity=0.607 Sum_probs=16.1
Q ss_pred ceEEEeeccCCCCceeeec
Q psy4062 168 NCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 168 N~tI~aYGqTGSGKTyTm~ 186 (409)
|.-++..|.||||||++|-
T Consensus 449 N~N~~I~G~sGsGKS~l~k 467 (844)
T PRK13721 449 NYNMAVCGTSGAGKTGLIQ 467 (844)
T ss_pred cccEEEEcCCCCCHHHHHH
Confidence 4567889999999999983
No 375
>PHA02774 E1; Provisional
Probab=32.71 E-value=28 Score=37.76 Aligned_cols=26 Identities=23% Similarity=0.524 Sum_probs=19.7
Q ss_pred HHHHhcCcc--eEEEeeccCCCCceeee
Q psy4062 160 IASLLEGYN--CSVFVYGATGAGKTHTM 185 (409)
Q Consensus 160 V~~vl~G~N--~tI~aYGqTGSGKTyTm 185 (409)
+..++.|.- -|++-||+.|+||||--
T Consensus 424 lk~~l~~~PKknciv~~GPP~TGKS~fa 451 (613)
T PHA02774 424 LKDFLKGIPKKNCLVIYGPPDTGKSMFC 451 (613)
T ss_pred HHHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 445566643 58999999999999863
No 376
>PRK09401 reverse gyrase; Reviewed
Probab=32.65 E-value=32 Score=40.64 Aligned_cols=24 Identities=33% Similarity=0.462 Sum_probs=18.4
Q ss_pred HHHHHHhcCcceEEEeeccCCCCcee
Q psy4062 158 DIIASLLEGYNCSVFVYGATGAGKTH 183 (409)
Q Consensus 158 plV~~vl~G~N~tI~aYGqTGSGKTy 183 (409)
..+..++.|.|..+. .+||||||.
T Consensus 87 ~~i~~il~g~dv~i~--ApTGsGKT~ 110 (1176)
T PRK09401 87 TWAKRLLLGESFAII--APTGVGKTT 110 (1176)
T ss_pred HHHHHHHCCCcEEEE--cCCCCCHHH
Confidence 355678899887555 599999995
No 377
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=32.52 E-value=23 Score=39.09 Aligned_cols=41 Identities=24% Similarity=0.458 Sum_probs=27.3
Q ss_pred eeceEeCCCCCchhhhccchHHHHHHHhcCc-ceEEEeeccCCCCceeee
Q psy4062 137 LFDRVYGPSESNQDVYDGSTKDIIASLLEGY-NCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 137 ~FD~VF~~~asQ~eVf~~~~~plV~~vl~G~-N~tI~aYGqTGSGKTyTm 185 (409)
.||.|.|. +.+ ++.|...+-.|. ...++-||+.|+|||.+.
T Consensus 13 tFddVIGQ----e~v----v~~L~~aI~~grl~HAyLF~GPpGvGKTTlA 54 (702)
T PRK14960 13 NFNELVGQ----NHV----SRALSSALERGRLHHAYLFTGTRGVGKTTIA 54 (702)
T ss_pred CHHHhcCc----HHH----HHHHHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 47777773 333 344444444554 457789999999999876
No 378
>KOG0741|consensus
Probab=32.35 E-value=23 Score=37.98 Aligned_cols=16 Identities=38% Similarity=0.756 Sum_probs=13.6
Q ss_pred eEEEeeccCCCCceee
Q psy4062 169 CSVFVYGATGAGKTHT 184 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyT 184 (409)
-.|+-||+.|+|||-.
T Consensus 257 KGiLLyGPPGTGKTLi 272 (744)
T KOG0741|consen 257 KGILLYGPPGTGKTLI 272 (744)
T ss_pred eeEEEECCCCCChhHH
Confidence 3589999999999864
No 379
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=32.29 E-value=33 Score=30.87 Aligned_cols=27 Identities=26% Similarity=0.529 Sum_probs=20.3
Q ss_pred HHHHHHHhcCcceEEEeeccCCCCceeee
Q psy4062 157 KDIIASLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 157 ~plV~~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
..-+...+.| -+++-.|++|.|||..+
T Consensus 26 ~~~l~~~l~~--k~~vl~G~SGvGKSSLi 52 (161)
T PF03193_consen 26 IEELKELLKG--KTSVLLGQSGVGKSSLI 52 (161)
T ss_dssp HHHHHHHHTT--SEEEEECSTTSSHHHHH
T ss_pred HHHHHHHhcC--CEEEEECCCCCCHHHHH
Confidence 4455667777 56677899999998765
No 380
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=32.25 E-value=17 Score=38.73 Aligned_cols=43 Identities=23% Similarity=0.311 Sum_probs=27.6
Q ss_pred eeceEeCCCCCchhhhccchHHHHHHHhcCcceEEEeeccCCCCceeee
Q psy4062 137 LFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 137 ~FD~VF~~~asQ~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
.++.+.+.+..=..+++ .+.. +...+..|+-+|.+||||++..
T Consensus 185 ~~~~iig~s~~~~~~~~-----~i~~-~a~~~~pVlI~Ge~GtGK~~~A 227 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKK-----EIEV-VAASDLNVLILGETGVGKELVA 227 (509)
T ss_pred cCCceeecCHHHHHHHH-----HHHH-HhCCCCcEEEECCCCccHHHHH
Confidence 56666664332222222 2222 3466889999999999998876
No 381
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=32.24 E-value=20 Score=33.07 Aligned_cols=16 Identities=31% Similarity=0.476 Sum_probs=12.7
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
.|.-.|.+|||||+.+
T Consensus 8 vi~I~G~sGsGKSTl~ 23 (207)
T TIGR00235 8 IIGIGGGSGSGKTTVA 23 (207)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566899999999643
No 382
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=32.10 E-value=18 Score=33.79 Aligned_cols=16 Identities=25% Similarity=0.542 Sum_probs=13.4
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
.+.-.|+.|||||.+|
T Consensus 27 i~~ivGpNGaGKSTll 42 (212)
T cd03274 27 FSAIVGPNGSGKSNVI 42 (212)
T ss_pred eEEEECCCCCCHHHHH
Confidence 3456899999999988
No 383
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=31.94 E-value=17 Score=36.33 Aligned_cols=20 Identities=25% Similarity=0.436 Sum_probs=17.1
Q ss_pred CcceEEEeeccCCCCceeee
Q psy4062 166 GYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 166 G~N~tI~aYGqTGSGKTyTm 185 (409)
..+.-|+-+|.+||||++.-
T Consensus 27 ~~~~pVlI~GE~GtGK~~lA 46 (326)
T PRK11608 27 PLDKPVLIIGERGTGKELIA 46 (326)
T ss_pred CCCCCEEEECCCCCcHHHHH
Confidence 55778899999999998875
No 384
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=31.92 E-value=22 Score=35.39 Aligned_cols=16 Identities=31% Similarity=0.515 Sum_probs=13.2
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
.|+..|+||||||.--
T Consensus 6 ~i~i~GptgsGKt~la 21 (307)
T PRK00091 6 VIVIVGPTASGKTALA 21 (307)
T ss_pred EEEEECCCCcCHHHHH
Confidence 5788999999998653
No 385
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=31.89 E-value=16 Score=34.42 Aligned_cols=13 Identities=31% Similarity=0.565 Sum_probs=11.2
Q ss_pred eeccCCCCceeee
Q psy4062 173 VYGATGAGKTHTM 185 (409)
Q Consensus 173 aYGqTGSGKTyTm 185 (409)
--|.+|||||+++
T Consensus 4 I~G~sGSGKTTla 16 (220)
T cd02025 4 IAGSVAVGKSTTA 16 (220)
T ss_pred eeCCCCCCHHHHH
Confidence 3599999999987
No 386
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=31.72 E-value=31 Score=39.11 Aligned_cols=27 Identities=22% Similarity=0.357 Sum_probs=18.5
Q ss_pred HHHHHHHhcCcceEEEeeccCCCCceeee
Q psy4062 157 KDIIASLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 157 ~plV~~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
..+++.+ +. |..++..|+||||||..+
T Consensus 8 ~~i~~~l-~~-~~~vIi~a~TGSGKTT~v 34 (819)
T TIGR01970 8 PALRDAL-AA-HPQVVLEAPPGAGKSTAV 34 (819)
T ss_pred HHHHHHH-Hc-CCcEEEECCCCCCHHHHH
Confidence 3444444 33 446788999999999865
No 387
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=31.67 E-value=21 Score=32.99 Aligned_cols=14 Identities=29% Similarity=0.638 Sum_probs=12.0
Q ss_pred EEeeccCCCCceee
Q psy4062 171 VFVYGATGAGKTHT 184 (409)
Q Consensus 171 I~aYGqTGSGKTyT 184 (409)
|+.+|..|||||..
T Consensus 2 I~i~G~pGsGKsT~ 15 (210)
T TIGR01351 2 LVLLGPPGSGKGTQ 15 (210)
T ss_pred EEEECCCCCCHHHH
Confidence 67899999999764
No 388
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=31.63 E-value=21 Score=39.78 Aligned_cols=18 Identities=33% Similarity=0.564 Sum_probs=14.7
Q ss_pred eEEEeeccCCCCceeeec
Q psy4062 169 CSVFVYGATGAGKTHTML 186 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm~ 186 (409)
..|+-||++|||||+..-
T Consensus 488 ~giLL~GppGtGKT~lak 505 (733)
T TIGR01243 488 KGVLLFGPPGTGKTLLAK 505 (733)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 357889999999998753
No 389
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=31.62 E-value=24 Score=38.35 Aligned_cols=26 Identities=31% Similarity=0.436 Sum_probs=18.4
Q ss_pred HHHHHhcCcceEEEeeccCCCCceeeec
Q psy4062 159 IIASLLEGYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 159 lV~~vl~G~N~tI~aYGqTGSGKTyTm~ 186 (409)
.+..++.. ...+..|..|||||||+.
T Consensus 153 A~~~al~~--~~~vitGgpGTGKTt~v~ 178 (586)
T TIGR01447 153 AVALALKS--NFSLITGGPGTGKTTTVA 178 (586)
T ss_pred HHHHHhhC--CeEEEEcCCCCCHHHHHH
Confidence 34455553 445668999999999974
No 390
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=31.56 E-value=19 Score=40.07 Aligned_cols=31 Identities=26% Similarity=0.336 Sum_probs=23.2
Q ss_pred HHHHHHHhcCcceEEEeeccCCCCceeeecC
Q psy4062 157 KDIIASLLEGYNCSVFVYGATGAGKTHTMLG 187 (409)
Q Consensus 157 ~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G 187 (409)
..+++-+..+....++-||++|+|||....|
T Consensus 192 ~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~ 222 (731)
T TIGR02639 192 ERTIQVLCRRKKNNPLLVGEPGVGKTAIAEG 222 (731)
T ss_pred HHHHHHHhcCCCCceEEECCCCCCHHHHHHH
Confidence 3466555555556778999999999999865
No 391
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=31.40 E-value=21 Score=37.33 Aligned_cols=17 Identities=35% Similarity=0.620 Sum_probs=14.7
Q ss_pred eEEEeeccCCCCceeee
Q psy4062 169 CSVFVYGATGAGKTHTM 185 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm 185 (409)
.-|+-+|++|+|||+..
T Consensus 48 ~~ILLiGppG~GKT~lA 64 (441)
T TIGR00390 48 KNILMIGPTGVGKTEIA 64 (441)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46899999999999865
No 392
>KOG0328|consensus
Probab=31.12 E-value=41 Score=33.32 Aligned_cols=27 Identities=30% Similarity=0.498 Sum_probs=21.6
Q ss_pred HHHHHHhcCcceEEEeeccCCCCceeeec
Q psy4062 158 DIIASLLEGYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 158 plV~~vl~G~N~tI~aYGqTGSGKTyTm~ 186 (409)
..|..++.|.|+ +|-.|+|+|||-|..
T Consensus 56 rAi~~IlkGrdV--iaQaqSGTGKTa~~s 82 (400)
T KOG0328|consen 56 RAIPQILKGRDV--IAQAQSGTGKTATFS 82 (400)
T ss_pred hhhhhhhcccce--EEEecCCCCceEEEE
Confidence 345567899986 788899999998874
No 393
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=31.05 E-value=19 Score=33.34 Aligned_cols=18 Identities=33% Similarity=0.523 Sum_probs=14.5
Q ss_pred eEEEeeccCCCCceeeec
Q psy4062 169 CSVFVYGATGAGKTHTML 186 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm~ 186 (409)
..+.-.|++|||||..|-
T Consensus 29 ~~~~i~G~NGsGKSTll~ 46 (213)
T cd03279 29 GLFLICGPTGAGKSTILD 46 (213)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 356679999999998763
No 394
>PRK14527 adenylate kinase; Provisional
Probab=30.89 E-value=26 Score=31.69 Aligned_cols=17 Identities=35% Similarity=0.479 Sum_probs=14.2
Q ss_pred eEEEeeccCCCCceeee
Q psy4062 169 CSVFVYGATGAGKTHTM 185 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm 185 (409)
..|+.+|..|||||...
T Consensus 7 ~~i~i~G~pGsGKsT~a 23 (191)
T PRK14527 7 KVVIFLGPPGAGKGTQA 23 (191)
T ss_pred cEEEEECCCCCCHHHHH
Confidence 46889999999998754
No 395
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=30.84 E-value=23 Score=39.49 Aligned_cols=21 Identities=38% Similarity=0.555 Sum_probs=15.6
Q ss_pred CcceEEEeeccCCCCceeeec
Q psy4062 166 GYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 166 G~N~tI~aYGqTGSGKTyTm~ 186 (409)
|-..+.+-+|.||||||-..+
T Consensus 215 ~~~~~~Ll~GvTGSGKTEvYl 235 (730)
T COG1198 215 GGFAPFLLDGVTGSGKTEVYL 235 (730)
T ss_pred ccccceeEeCCCCCcHHHHHH
Confidence 334556789999999996554
No 396
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=30.84 E-value=17 Score=34.56 Aligned_cols=15 Identities=33% Similarity=0.705 Sum_probs=12.6
Q ss_pred EEeeccCCCCceeee
Q psy4062 171 VFVYGATGAGKTHTM 185 (409)
Q Consensus 171 I~aYGqTGSGKTyTm 185 (409)
+.-.|++|||||.-|
T Consensus 34 vaI~GpSGSGKSTLL 48 (226)
T COG1136 34 VAIVGPSGSGKSTLL 48 (226)
T ss_pred EEEECCCCCCHHHHH
Confidence 556899999999766
No 397
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=30.82 E-value=24 Score=28.84 Aligned_cols=15 Identities=27% Similarity=0.496 Sum_probs=12.4
Q ss_pred EEeeccCCCCceeee
Q psy4062 171 VFVYGATGAGKTHTM 185 (409)
Q Consensus 171 I~aYGqTGSGKTyTm 185 (409)
|+-.|.+|+|||.-+
T Consensus 2 V~iiG~~~~GKSTli 16 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLI 16 (116)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 567899999998754
No 398
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=30.51 E-value=21 Score=34.40 Aligned_cols=20 Identities=35% Similarity=0.768 Sum_probs=16.6
Q ss_pred CcceEEEeeccCCCCceeee
Q psy4062 166 GYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 166 G~N~tI~aYGqTGSGKTyTm 185 (409)
-....|+..|.||+|||.++
T Consensus 29 ~~~~~IllvG~tGvGKSSli 48 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTI 48 (249)
T ss_pred cCCeEEEEECCCCCcHHHHH
Confidence 34567889999999999875
No 399
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=30.49 E-value=22 Score=32.19 Aligned_cols=15 Identities=40% Similarity=0.541 Sum_probs=12.5
Q ss_pred EEeeccCCCCceeee
Q psy4062 171 VFVYGATGAGKTHTM 185 (409)
Q Consensus 171 I~aYGqTGSGKTyTm 185 (409)
|.-.|.+|||||+..
T Consensus 2 i~i~G~sgsGKttla 16 (179)
T cd02028 2 VGIAGPSGSGKTTFA 16 (179)
T ss_pred EEEECCCCCCHHHHH
Confidence 566799999999865
No 400
>PRK14530 adenylate kinase; Provisional
Probab=30.47 E-value=24 Score=32.61 Aligned_cols=16 Identities=38% Similarity=0.663 Sum_probs=13.2
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
.|+-.|.+|||||.-.
T Consensus 5 ~I~i~G~pGsGKsT~~ 20 (215)
T PRK14530 5 RILLLGAPGAGKGTQS 20 (215)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4777999999998654
No 401
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=30.37 E-value=31 Score=39.26 Aligned_cols=17 Identities=35% Similarity=0.577 Sum_probs=15.0
Q ss_pred eEEEeeccCCCCceeee
Q psy4062 169 CSVFVYGATGAGKTHTM 185 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm 185 (409)
++++-.|+||+|||+..
T Consensus 597 ~~~lf~Gp~GvGKT~lA 613 (852)
T TIGR03345 597 GVFLLVGPSGVGKTETA 613 (852)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 57899999999999875
No 402
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=30.37 E-value=19 Score=39.25 Aligned_cols=45 Identities=18% Similarity=0.175 Sum_probs=27.5
Q ss_pred eEeeceEeCCCCCchhhhccchHHHHHHHhcCcceEEEeeccCCCCceeee
Q psy4062 135 EFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 135 ~F~FD~VF~~~asQ~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
.+.||.+.+.+. ....+.. .+..+ ...+..|+-+|.+||||++.-
T Consensus 321 ~~~~~~l~g~s~----~~~~~~~-~~~~~-a~~~~pvli~Ge~GtGK~~~A 365 (638)
T PRK11388 321 SHTFDHMPQDSP----QMRRLIH-FGRQA-AKSSFPVLLCGEEGVGKALLA 365 (638)
T ss_pred cccccceEECCH----HHHHHHH-HHHHH-hCcCCCEEEECCCCcCHHHHH
Confidence 466877765432 2222211 22222 246777999999999998865
No 403
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=30.30 E-value=18 Score=40.66 Aligned_cols=16 Identities=31% Similarity=0.436 Sum_probs=14.0
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
.++-||++|+|||+..
T Consensus 349 ~lll~GppG~GKT~lA 364 (775)
T TIGR00763 349 ILCLVGPPGVGKTSLG 364 (775)
T ss_pred eEEEECCCCCCHHHHH
Confidence 5778999999999876
No 404
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=30.21 E-value=25 Score=39.48 Aligned_cols=41 Identities=24% Similarity=0.375 Sum_probs=25.1
Q ss_pred eeceEeCCCCCchhhhccchHHHHHHHhcCc-ceEEEeeccCCCCceeee
Q psy4062 137 LFDRVYGPSESNQDVYDGSTKDIIASLLEGY-NCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 137 ~FD~VF~~~asQ~eVf~~~~~plV~~vl~G~-N~tI~aYGqTGSGKTyTm 185 (409)
+||.|.++ +.+- +.|...+-.|. .-.++-||..|+|||.+.
T Consensus 14 tFdEVIGQ----e~Vv----~~L~~aL~~gRL~HAyLFtGPpGvGKTTlA 55 (830)
T PRK07003 14 DFASLVGQ----EHVV----RALTHALDGGRLHHAYLFTGTRGVGKTTLS 55 (830)
T ss_pred cHHHHcCc----HHHH----HHHHHHHhcCCCCeEEEEECCCCCCHHHHH
Confidence 47777663 3332 33333333343 456789999999999864
No 405
>KOG2655|consensus
Probab=30.18 E-value=30 Score=35.35 Aligned_cols=22 Identities=27% Similarity=0.659 Sum_probs=19.5
Q ss_pred HhcCcceEEEeeccCCCCceee
Q psy4062 163 LLEGYNCSVFVYGATGAGKTHT 184 (409)
Q Consensus 163 vl~G~N~tI~aYGqTGSGKTyT 184 (409)
+-.|+.-++++.|+.|+|||.-
T Consensus 16 ~KkG~~ftlmvvG~sGlGKsTf 37 (366)
T KOG2655|consen 16 VKKGFDFTLMVVGESGLGKSTF 37 (366)
T ss_pred HhcCCceEEEEecCCCccHHHH
Confidence 4589999999999999999753
No 406
>TIGR02759 TraD_Ftype type IV conjugative transfer system coupling protein TraD. The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM).
Probab=30.17 E-value=18 Score=39.17 Aligned_cols=16 Identities=31% Similarity=0.742 Sum_probs=13.6
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
-++.+|.||||||..|
T Consensus 178 h~li~G~tGsGKs~~i 193 (566)
T TIGR02759 178 HILIHGTTGSGKSVAI 193 (566)
T ss_pred ceEEEcCCCCCHHHHH
Confidence 4789999999999654
No 407
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=30.11 E-value=25 Score=38.57 Aligned_cols=32 Identities=28% Similarity=0.250 Sum_probs=20.6
Q ss_pred chhhhccchHHHHHHHhcCcceEEEeeccCCCCceeee
Q psy4062 148 NQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 148 Q~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
|.++++.+.. .+-+| ..+++-.+||+|||+..
T Consensus 2 Q~~~~~~i~~----al~~~--~~lliEA~TGtGKTlAY 33 (636)
T TIGR03117 2 QALFYLNCLT----SLRQK--RIGMLEASTGVGKTLAM 33 (636)
T ss_pred HHHHHHHHHH----HHhcC--CeEEEEcCCCCcHHHHH
Confidence 5666654322 22333 55788899999999654
No 408
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=30.06 E-value=25 Score=34.68 Aligned_cols=15 Identities=33% Similarity=0.744 Sum_probs=12.7
Q ss_pred EEeeccCCCCceeee
Q psy4062 171 VFVYGATGAGKTHTM 185 (409)
Q Consensus 171 I~aYGqTGSGKTyTm 185 (409)
|+..|+||||||.-.
T Consensus 2 i~i~G~t~~GKs~la 16 (287)
T TIGR00174 2 IFIMGPTAVGKSQLA 16 (287)
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999998654
No 409
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=30.06 E-value=27 Score=32.05 Aligned_cols=15 Identities=40% Similarity=0.713 Sum_probs=11.7
Q ss_pred eEEEeeccCCCCcee
Q psy4062 169 CSVFVYGATGAGKTH 183 (409)
Q Consensus 169 ~tI~aYGqTGSGKTy 183 (409)
-+|+-.|+.|||||.
T Consensus 4 ~~vlL~Gps~SGKTa 18 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTA 18 (181)
T ss_dssp -EEEEE-STTSSHHH
T ss_pred ceEEEEcCCCCCHHH
Confidence 468889999999985
No 410
>PRK10867 signal recognition particle protein; Provisional
Probab=29.97 E-value=25 Score=36.76 Aligned_cols=19 Identities=37% Similarity=0.468 Sum_probs=15.8
Q ss_pred ceEEEeeccCCCCceeeec
Q psy4062 168 NCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 168 N~tI~aYGqTGSGKTyTm~ 186 (409)
-..|+..|.+|||||.|..
T Consensus 100 p~vI~~vG~~GsGKTTtaa 118 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAG 118 (433)
T ss_pred CEEEEEECCCCCcHHHHHH
Confidence 3567888999999999873
No 411
>KOG1970|consensus
Probab=29.97 E-value=24 Score=37.91 Aligned_cols=16 Identities=31% Similarity=0.677 Sum_probs=14.0
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
.++..|++|+|||.|+
T Consensus 112 iLLltGPsGcGKSTtv 127 (634)
T KOG1970|consen 112 ILLLTGPSGCGKSTTV 127 (634)
T ss_pred EEEEeCCCCCCchhHH
Confidence 4567899999999998
No 412
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=29.95 E-value=35 Score=31.87 Aligned_cols=26 Identities=19% Similarity=0.266 Sum_probs=18.5
Q ss_pred HHHHhcCcc--eEEEeeccCCCCceeee
Q psy4062 160 IASLLEGYN--CSVFVYGATGAGKTHTM 185 (409)
Q Consensus 160 V~~vl~G~N--~tI~aYGqTGSGKTyTm 185 (409)
+|.++.|+- ..++-.|.+|+|||..+
T Consensus 3 LD~~~~Gl~~G~l~lI~G~~G~GKT~~~ 30 (242)
T cd00984 3 LDNLTGGLQPGDLIIIAARPSMGKTAFA 30 (242)
T ss_pred hhhhhcCCCCCeEEEEEeCCCCCHHHHH
Confidence 355566653 35677899999999764
No 413
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=29.88 E-value=26 Score=39.91 Aligned_cols=18 Identities=39% Similarity=0.490 Sum_probs=15.4
Q ss_pred ceEEEeeccCCCCceeee
Q psy4062 168 NCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 168 N~tI~aYGqTGSGKTyTm 185 (409)
.+.++-+|++|+|||++.
T Consensus 595 ~~~~Lf~Gp~GvGKt~lA 612 (852)
T TIGR03346 595 IGSFLFLGPTGVGKTELA 612 (852)
T ss_pred CeEEEEEcCCCCCHHHHH
Confidence 467888999999999875
No 414
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=29.82 E-value=21 Score=40.33 Aligned_cols=16 Identities=44% Similarity=0.694 Sum_probs=14.1
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
-.+..|+||||||+.|
T Consensus 443 n~~I~G~tGsGKS~l~ 458 (811)
T PRK13873 443 HTLVVGPTGAGKSVLL 458 (811)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4567999999999998
No 415
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=29.81 E-value=27 Score=35.78 Aligned_cols=31 Identities=23% Similarity=0.464 Sum_probs=23.7
Q ss_pred hHHHHHHHhcC-c--ceEEEeeccCCCCceeeec
Q psy4062 156 TKDIIASLLEG-Y--NCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 156 ~~plV~~vl~G-~--N~tI~aYGqTGSGKTyTm~ 186 (409)
+-+-+|.++.| + ...++-+|.+|+|||..+.
T Consensus 67 Gi~eLD~vLgGGi~~GslvLI~G~pG~GKStLll 100 (372)
T cd01121 67 GIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLL 100 (372)
T ss_pred CCHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHH
Confidence 44567777764 2 4678999999999998764
No 416
>PRK13853 type IV secretion system protein VirB4; Provisional
Probab=29.78 E-value=17 Score=40.87 Aligned_cols=18 Identities=33% Similarity=0.512 Sum_probs=15.3
Q ss_pred ceEEEeeccCCCCceeee
Q psy4062 168 NCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 168 N~tI~aYGqTGSGKTyTm 185 (409)
.+-.+.+|+||||||..+
T Consensus 426 ~g~~~I~G~tGsGKS~l~ 443 (789)
T PRK13853 426 VGMTAIFGPIGRGKTTLM 443 (789)
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 345788999999999987
No 417
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=29.77 E-value=33 Score=37.43 Aligned_cols=42 Identities=21% Similarity=0.377 Sum_probs=26.1
Q ss_pred eeceEeCCCCCchhhhccchHHHHHHHhcCc-ceEEEeeccCCCCceeeec
Q psy4062 137 LFDRVYGPSESNQDVYDGSTKDIIASLLEGY-NCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 137 ~FD~VF~~~asQ~eVf~~~~~plV~~vl~G~-N~tI~aYGqTGSGKTyTm~ 186 (409)
.|+.|.|+ +.+ +..+...+-.|. .-+++-||+.|+|||..+.
T Consensus 14 ~F~dIIGQ----e~i----v~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~ 56 (605)
T PRK05896 14 NFKQIIGQ----ELI----KKILVNAILNNKLTHAYIFSGPRGIGKTSIAK 56 (605)
T ss_pred CHHHhcCc----HHH----HHHHHHHHHcCCCCceEEEECCCCCCHHHHHH
Confidence 36666653 332 233444444443 4478999999999998763
No 418
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=29.65 E-value=26 Score=41.51 Aligned_cols=25 Identities=36% Similarity=0.490 Sum_probs=17.6
Q ss_pred HHHHhcCcceEEEeeccCCCCceeee
Q psy4062 160 IASLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 160 V~~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
|-.++++. ..++..|+||||||.-+
T Consensus 82 Il~ai~~~-~VviI~GeTGSGKTTql 106 (1294)
T PRK11131 82 ILEAIRDH-QVVIVAGETGSGKTTQL 106 (1294)
T ss_pred HHHHHHhC-CeEEEECCCCCCHHHHH
Confidence 33445554 45788899999999854
No 419
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=29.39 E-value=13 Score=42.67 Aligned_cols=13 Identities=38% Similarity=0.368 Sum_probs=11.1
Q ss_pred cCCCCceeeecCC
Q psy4062 176 ATGAGKTHTMLGN 188 (409)
Q Consensus 176 qTGSGKTyTm~G~ 188 (409)
.|||||||||.+.
T Consensus 67 ~TGtGKT~~~~~~ 79 (986)
T PRK15483 67 ETGTGKTYVYTRL 79 (986)
T ss_pred CCCCCHHHHHHHH
Confidence 7999999988764
No 420
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=29.27 E-value=35 Score=36.46 Aligned_cols=41 Identities=24% Similarity=0.383 Sum_probs=25.9
Q ss_pred eeceEeCCCCCchhhhccchHHHHHHHhcC-cceEEEeeccCCCCceeee
Q psy4062 137 LFDRVYGPSESNQDVYDGSTKDIIASLLEG-YNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 137 ~FD~VF~~~asQ~eVf~~~~~plV~~vl~G-~N~tI~aYGqTGSGKTyTm 185 (409)
.||.|.+ |+.+- +.|...+-.| ..-.++-||+.|+|||.+.
T Consensus 14 ~f~divG----q~~v~----~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A 55 (509)
T PRK14958 14 CFQEVIG----QAPVV----RALSNALDQQYLHHAYLFTGTRGVGKTTIS 55 (509)
T ss_pred CHHHhcC----CHHHH----HHHHHHHHhCCCCeeEEEECCCCCCHHHHH
Confidence 4777665 34433 3333344344 3556899999999999754
No 421
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=29.25 E-value=27 Score=31.49 Aligned_cols=14 Identities=29% Similarity=0.574 Sum_probs=11.8
Q ss_pred EEeeccCCCCceee
Q psy4062 171 VFVYGATGAGKTHT 184 (409)
Q Consensus 171 I~aYGqTGSGKTyT 184 (409)
+|-.|.+|||||.-
T Consensus 2 ~li~G~~~sGKS~~ 15 (169)
T cd00544 2 ILVTGGARSGKSRF 15 (169)
T ss_pred EEEECCCCCCHHHH
Confidence 57899999999854
No 422
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=29.15 E-value=21 Score=31.59 Aligned_cols=16 Identities=38% Similarity=0.636 Sum_probs=13.0
Q ss_pred EEeeccCCCCceeeec
Q psy4062 171 VFVYGATGAGKTHTML 186 (409)
Q Consensus 171 I~aYGqTGSGKTyTm~ 186 (409)
++-.|.+|+|||.+..
T Consensus 3 ~~~~G~~G~GKTt~~~ 18 (173)
T cd03115 3 ILLVGLQGVGKTTTAA 18 (173)
T ss_pred EEEECCCCCCHHHHHH
Confidence 4567999999998863
No 423
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=29.07 E-value=33 Score=37.71 Aligned_cols=18 Identities=28% Similarity=0.438 Sum_probs=15.6
Q ss_pred eEEEeeccCCCCceeeec
Q psy4062 169 CSVFVYGATGAGKTHTML 186 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm~ 186 (409)
.-++++|+||||||..+.
T Consensus 176 ~HvlviapTgSGKgvg~V 193 (636)
T PRK13880 176 EHVLTYAPTRSGKGVGLV 193 (636)
T ss_pred ceEEEEecCCCCCceEEE
Confidence 458999999999999874
No 424
>KOG0987|consensus
Probab=29.03 E-value=43 Score=36.01 Aligned_cols=36 Identities=31% Similarity=0.580 Sum_probs=25.4
Q ss_pred CCCchhhhccchHHHHHHHhcCcceEEEeeccCCCCceeee
Q psy4062 145 SESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 145 ~asQ~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
+..|..||+ . ++..+.+-.-..+| ||.-|+||||-.
T Consensus 119 ~~eqk~v~d-~---~~~~v~~~~g~~ff-~g~~gtgKt~l~ 154 (540)
T KOG0987|consen 119 TPEQKRVYD-A---ILEAVENNLGGVFF-YGFGGTGKTYLL 154 (540)
T ss_pred CHHHHHHHH-H---HHHHHhccccceee-eccCCccceeeH
Confidence 346778887 2 34445555556677 999999999965
No 425
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=28.91 E-value=26 Score=34.06 Aligned_cols=16 Identities=25% Similarity=0.491 Sum_probs=13.5
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
.|+..|..|||||+--
T Consensus 4 liil~G~pGSGKSTla 19 (300)
T PHA02530 4 IILTVGVPGSGKSTWA 19 (300)
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5788999999998763
No 426
>PRK11823 DNA repair protein RadA; Provisional
Probab=28.86 E-value=41 Score=35.27 Aligned_cols=32 Identities=25% Similarity=0.442 Sum_probs=24.8
Q ss_pred chHHHHHHHhcC-c--ceEEEeeccCCCCceeeec
Q psy4062 155 STKDIIASLLEG-Y--NCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 155 ~~~plV~~vl~G-~--N~tI~aYGqTGSGKTyTm~ 186 (409)
++-+-+|.++.| + ...++-+|++|+|||.-+.
T Consensus 64 TGi~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~l 98 (446)
T PRK11823 64 TGIGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLL 98 (446)
T ss_pred CCcHHHHHHhcCCccCCEEEEEECCCCCCHHHHHH
Confidence 455678888874 3 5678899999999998663
No 427
>PRK05973 replicative DNA helicase; Provisional
Probab=28.84 E-value=38 Score=32.48 Aligned_cols=26 Identities=23% Similarity=0.190 Sum_probs=19.0
Q ss_pred HHHHhcCcc--eEEEeeccCCCCceeee
Q psy4062 160 IASLLEGYN--CSVFVYGATGAGKTHTM 185 (409)
Q Consensus 160 V~~vl~G~N--~tI~aYGqTGSGKTyTm 185 (409)
.+.+..|+. ..++.+|.+|+|||.-.
T Consensus 54 ~~~l~GGl~~Gsl~LIaG~PG~GKT~la 81 (237)
T PRK05973 54 AEELFSQLKPGDLVLLGARPGHGKTLLG 81 (237)
T ss_pred HHHhcCCCCCCCEEEEEeCCCCCHHHHH
Confidence 445666763 46788999999999754
No 428
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=28.78 E-value=20 Score=37.85 Aligned_cols=20 Identities=35% Similarity=0.504 Sum_probs=16.8
Q ss_pred CcceEEEeeccCCCCceeee
Q psy4062 166 GYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 166 G~N~tI~aYGqTGSGKTyTm 185 (409)
+....|+-||+.|+|||+.-
T Consensus 274 ~~~~giLl~GpPGtGKT~lA 293 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLA 293 (494)
T ss_pred CCCCeeEEECCCCCCHHHHH
Confidence 44557999999999999875
No 429
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=28.75 E-value=21 Score=40.63 Aligned_cols=17 Identities=41% Similarity=0.851 Sum_probs=14.8
Q ss_pred eEEEeeccCCCCceeee
Q psy4062 169 CSVFVYGATGAGKTHTM 185 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm 185 (409)
+-.+..|+||||||+.|
T Consensus 489 gh~~I~G~tGsGKS~l~ 505 (852)
T PRK13891 489 GHTFMFGPTGAGKSTHL 505 (852)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 34688999999999988
No 430
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=28.73 E-value=27 Score=36.50 Aligned_cols=19 Identities=32% Similarity=0.448 Sum_probs=15.9
Q ss_pred ceEEEeeccCCCCceeeec
Q psy4062 168 NCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 168 N~tI~aYGqTGSGKTyTm~ 186 (409)
...++..|.+|+|||.|..
T Consensus 99 p~vi~~vG~~GsGKTTtaa 117 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCG 117 (428)
T ss_pred CEEEEEECCCCCcHHHHHH
Confidence 3578889999999999963
No 431
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=28.70 E-value=25 Score=36.74 Aligned_cols=19 Identities=32% Similarity=0.475 Sum_probs=16.3
Q ss_pred ceEEEeeccCCCCceeeec
Q psy4062 168 NCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 168 N~tI~aYGqTGSGKTyTm~ 186 (409)
...|+-.|.+|+|||.|..
T Consensus 100 ~~vi~lvG~~GvGKTTtaa 118 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCT 118 (429)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4578889999999999974
No 432
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=28.65 E-value=58 Score=32.51 Aligned_cols=17 Identities=35% Similarity=0.729 Sum_probs=14.8
Q ss_pred eEEEEEEeCCCCccccc
Q psy4062 35 HMKVYIRVRPQSQKEED 51 (409)
Q Consensus 35 ~~~v~~r~rp~~~~e~~ 51 (409)
+|+|+||+||+...|..
T Consensus 2 ~i~V~vRvRP~~~~e~~ 18 (333)
T cd01371 2 NVKVVVRCRPLNKREKS 18 (333)
T ss_pred CeEEEEEcCcCChhhhh
Confidence 58999999999988764
No 433
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=28.63 E-value=25 Score=36.97 Aligned_cols=15 Identities=53% Similarity=0.791 Sum_probs=12.9
Q ss_pred EeeccCCCCceeeec
Q psy4062 172 FVYGATGAGKTHTML 186 (409)
Q Consensus 172 ~aYGqTGSGKTyTm~ 186 (409)
+--|.||+|||-|+.
T Consensus 23 LIaGATGTGKTvTLq 37 (502)
T PF05872_consen 23 LIAGATGTGKTVTLQ 37 (502)
T ss_pred eeeccCCCCceehHH
Confidence 456999999999995
No 434
>KOG1514|consensus
Probab=28.62 E-value=29 Score=38.25 Aligned_cols=53 Identities=23% Similarity=0.308 Sum_probs=34.0
Q ss_pred CCcccCCchhhHhhhhccCCCccE---------EEEEEeCCCCCCHHHHHHHHHHHHHHhcCccccee
Q psy4062 301 RHVPYRDSKLTRILKDSLGGNCKT---------VMIANIAPTALSYEDSYNTLKYATRAKKIKAKVSR 359 (409)
Q Consensus 301 ~~iPyRdSkLT~LLk~sLgGn~~t---------~~I~~isP~~~~~~eTl~TL~fa~rak~Ik~~~~~ 359 (409)
.+-||-...|-.++...|.|-... -=||.|| -++-..|+++.||.+|..+..+
T Consensus 572 ~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavS------GDaRraldic~RA~Eia~~~~~ 633 (767)
T KOG1514|consen 572 CFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVS------GDARRALDICRRAAEIAEERNV 633 (767)
T ss_pred ecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhcc------ccHHHHHHHHHHHHHHhhhhcc
Confidence 567888888888888888764100 0122333 2456778999999888765433
No 435
>PRK00279 adk adenylate kinase; Reviewed
Probab=28.58 E-value=28 Score=32.20 Aligned_cols=15 Identities=33% Similarity=0.640 Sum_probs=12.8
Q ss_pred EEEeeccCCCCceee
Q psy4062 170 SVFVYGATGAGKTHT 184 (409)
Q Consensus 170 tI~aYGqTGSGKTyT 184 (409)
-|+.+|..|||||..
T Consensus 2 ~I~v~G~pGsGKsT~ 16 (215)
T PRK00279 2 RLILLGPPGAGKGTQ 16 (215)
T ss_pred EEEEECCCCCCHHHH
Confidence 378899999999964
No 436
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=28.57 E-value=30 Score=31.20 Aligned_cols=16 Identities=25% Similarity=0.696 Sum_probs=13.4
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
.++-.|++|||||..+
T Consensus 4 ~i~l~G~sGsGKsTl~ 19 (186)
T PRK10078 4 LIWLMGPSGSGKDSLL 19 (186)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667999999999875
No 437
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=28.54 E-value=52 Score=29.56 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=19.2
Q ss_pred HHHHhcC-cceEEEeeccCCCCceeee
Q psy4062 160 IASLLEG-YNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 160 V~~vl~G-~N~tI~aYGqTGSGKTyTm 185 (409)
.+.+-.| ...+++-||+.|+|||..+
T Consensus 5 ~~~i~~~~~~~~~L~~G~~G~gkt~~a 31 (188)
T TIGR00678 5 KRALEKGRLAHAYLFAGPEGVGKELLA 31 (188)
T ss_pred HHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 3344455 4567888999999999776
No 438
>PRK05480 uridine/cytidine kinase; Provisional
Probab=28.48 E-value=25 Score=32.27 Aligned_cols=17 Identities=29% Similarity=0.462 Sum_probs=13.5
Q ss_pred eEEEeeccCCCCceeee
Q psy4062 169 CSVFVYGATGAGKTHTM 185 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm 185 (409)
-.|.--|.+|||||+..
T Consensus 7 ~iI~I~G~sGsGKTTl~ 23 (209)
T PRK05480 7 IIIGIAGGSGSGKTTVA 23 (209)
T ss_pred EEEEEECCCCCCHHHHH
Confidence 35667899999999765
No 439
>KOG0736|consensus
Probab=28.44 E-value=28 Score=38.88 Aligned_cols=16 Identities=38% Similarity=0.802 Sum_probs=14.0
Q ss_pred eEEEeeccCCCCceee
Q psy4062 169 CSVFVYGATGAGKTHT 184 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyT 184 (409)
+.|+-||+.|+|||--
T Consensus 706 SGILLYGPPGTGKTLl 721 (953)
T KOG0736|consen 706 SGILLYGPPGTGKTLL 721 (953)
T ss_pred ceeEEECCCCCchHHH
Confidence 6799999999999854
No 440
>PRK04296 thymidine kinase; Provisional
Probab=28.38 E-value=17 Score=33.19 Aligned_cols=17 Identities=41% Similarity=0.813 Sum_probs=14.0
Q ss_pred EEEeeccCCCCceeeec
Q psy4062 170 SVFVYGATGAGKTHTML 186 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm~ 186 (409)
.++-+|+.|+|||..+.
T Consensus 4 i~litG~~GsGKTT~~l 20 (190)
T PRK04296 4 LEFIYGAMNSGKSTELL 20 (190)
T ss_pred EEEEECCCCCHHHHHHH
Confidence 46779999999997654
No 441
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=28.36 E-value=20 Score=35.36 Aligned_cols=17 Identities=41% Similarity=0.593 Sum_probs=15.1
Q ss_pred EEEeeccCCCCceeeec
Q psy4062 170 SVFVYGATGAGKTHTML 186 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm~ 186 (409)
.|+..|.+|||||..+-
T Consensus 8 ~i~i~G~~GsGKtt~~~ 24 (288)
T PRK05416 8 LVIVTGLSGAGKSVALR 24 (288)
T ss_pred EEEEECCCCCcHHHHHH
Confidence 57889999999999885
No 442
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=28.33 E-value=29 Score=31.97 Aligned_cols=16 Identities=25% Similarity=0.576 Sum_probs=13.4
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
..+-+|++|||||--+
T Consensus 26 ~~~i~G~NGsGKS~il 41 (220)
T PF02463_consen 26 LNVIVGPNGSGKSNIL 41 (220)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEEcCCCCCHHHHH
Confidence 5677999999999665
No 443
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=28.29 E-value=36 Score=36.30 Aligned_cols=27 Identities=33% Similarity=0.457 Sum_probs=20.3
Q ss_pred HHHHHHHhcCcceEEEeeccCCCCceeee
Q psy4062 157 KDIIASLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 157 ~plV~~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
...+..+++|.+ |++..|||||||...
T Consensus 57 ~~~IP~~l~g~D--vi~~A~TGsGKT~Af 83 (513)
T COG0513 57 LAAIPLILAGRD--VLGQAQTGTGKTAAF 83 (513)
T ss_pred HHHHHHHhCCCC--EEEECCCCChHHHHH
Confidence 345667888966 478889999998764
No 444
>PLN02165 adenylate isopentenyltransferase
Probab=28.26 E-value=29 Score=35.00 Aligned_cols=17 Identities=41% Similarity=0.698 Sum_probs=13.9
Q ss_pred EEEeeccCCCCceeeec
Q psy4062 170 SVFVYGATGAGKTHTML 186 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm~ 186 (409)
.|+-.|+||||||....
T Consensus 45 iivIiGPTGSGKStLA~ 61 (334)
T PLN02165 45 VVVIMGATGSGKSRLSV 61 (334)
T ss_pred EEEEECCCCCcHHHHHH
Confidence 56779999999997653
No 445
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=28.08 E-value=31 Score=31.87 Aligned_cols=17 Identities=35% Similarity=0.567 Sum_probs=14.9
Q ss_pred EEEeeccCCCCceeeec
Q psy4062 170 SVFVYGATGAGKTHTML 186 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm~ 186 (409)
+++-+|++|||||..+.
T Consensus 24 ~~~i~G~NGsGKTTLl~ 40 (204)
T cd03240 24 LTLIVGQNGAGKTTIIE 40 (204)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 77889999999998773
No 446
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=28.06 E-value=49 Score=32.96 Aligned_cols=32 Identities=22% Similarity=0.326 Sum_probs=23.8
Q ss_pred cchHHHHHHHhcC-c--ceEEEeeccCCCCceeee
Q psy4062 154 GSTKDIIASLLEG-Y--NCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 154 ~~~~plV~~vl~G-~--N~tI~aYGqTGSGKTyTm 185 (409)
.++-+-+|.++.| + ...+..||..|+|||.-+
T Consensus 79 ~tg~~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~ 113 (316)
T TIGR02239 79 TTGSKELDKLLGGGIETGSITEIFGEFRTGKTQLC 113 (316)
T ss_pred CCCCHHHHHHhcCCCCCCeEEEEECCCCCCcCHHH
Confidence 3566778887765 3 345678999999999765
No 447
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=28.05 E-value=32 Score=32.51 Aligned_cols=18 Identities=17% Similarity=0.326 Sum_probs=15.3
Q ss_pred ceEEEeeccCCCCceeee
Q psy4062 168 NCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 168 N~tI~aYGqTGSGKTyTm 185 (409)
...++.+|++|+|||...
T Consensus 24 g~~~~i~G~~G~GKTtl~ 41 (230)
T PRK08533 24 GSLILIEGDESTGKSILS 41 (230)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 357899999999999873
No 448
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=27.95 E-value=42 Score=39.87 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=17.0
Q ss_pred HHhcCcceEEEeeccCCCCceeee
Q psy4062 162 SLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 162 ~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
..+++ |..++..|.||||||.-+
T Consensus 77 ~~l~~-~~vvii~g~TGSGKTTql 99 (1283)
T TIGR01967 77 EAIAE-NQVVIIAGETGSGKTTQL 99 (1283)
T ss_pred HHHHh-CceEEEeCCCCCCcHHHH
Confidence 34444 446788899999999855
No 449
>KOG0092|consensus
Probab=27.94 E-value=1.3e+02 Score=28.05 Aligned_cols=97 Identities=20% Similarity=0.221 Sum_probs=53.1
Q ss_pred cceEEEeeccCCCCceeeecCCCCCCchhhhhhhhhhHHHhhhhceeEEEEEeceeeEeecCcccceeeEEEEEEeeccc
Q psy4062 167 YNCSVFVYGATGAGKTHTMLGNENHKGIMYLTMGIRNRVSALTRQMCTMRMYKTCLILRRKPSICEKMQLMVYVKMQDKA 246 (409)
Q Consensus 167 ~N~tI~aYGqTGSGKTyTm~G~~~~~GIi~~~~~~~~lf~~~~~~~s~~eiy~~~~~~~~~~ssrsh~i~~i~v~~~~~~ 246 (409)
...=|...|.++-|||. |+.|++.. -|.... .+.-.-+.++..+...+.
T Consensus 4 ~~~KvvLLG~~~VGKSS----------lV~Rfvk~--~F~e~~------------------e~TIGaaF~tktv~~~~~- 52 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSS----------LVLRFVKD--QFHENI------------------EPTIGAAFLTKTVTVDDN- 52 (200)
T ss_pred ceEEEEEECCCCCCchh----------hhhhhhhC--cccccc------------------ccccccEEEEEEEEeCCc-
Confidence 34557788999999985 44666665 443321 223334445555554333
Q ss_pred cceeEEeEEEEeecCCcccccccCCccchhhhhcc----c--chhHHHHHHHHHHHhcC
Q psy4062 247 TKQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSN----I--NKSLLALGNCINSLADG 299 (409)
Q Consensus 247 ~~~~~~skL~~VDLAGSEr~~~~~~~~~r~~E~~~----I--N~SL~aL~~vI~aL~~~ 299 (409)
.-++-+.|+||-||-..-...=-|--.++- | -.|+..+.+=+..|...
T Consensus 53 -----~ikfeIWDTAGQERy~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~ 106 (200)
T KOG0092|consen 53 -----TIKFEIWDTAGQERYHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQ 106 (200)
T ss_pred -----EEEEEEEEcCCcccccccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhh
Confidence 457889999999985422111111001100 1 14677777777666443
No 450
>KOG0922|consensus
Probab=27.92 E-value=34 Score=37.39 Aligned_cols=18 Identities=39% Similarity=0.671 Sum_probs=15.3
Q ss_pred ceEEEeeccCCCCceeee
Q psy4062 168 NCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 168 N~tI~aYGqTGSGKTyTm 185 (409)
|..++.-|.||||||.-+
T Consensus 66 nqvlIviGeTGsGKSTQi 83 (674)
T KOG0922|consen 66 NQVLIVIGETGSGKSTQI 83 (674)
T ss_pred CCEEEEEcCCCCCccccH
Confidence 566778899999999876
No 451
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.84 E-value=31 Score=37.45 Aligned_cols=41 Identities=27% Similarity=0.444 Sum_probs=25.8
Q ss_pred eeceEeCCCCCchhhhccchHHHHHHHhcC-cceEEEeeccCCCCceeee
Q psy4062 137 LFDRVYGPSESNQDVYDGSTKDIIASLLEG-YNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 137 ~FD~VF~~~asQ~eVf~~~~~plV~~vl~G-~N~tI~aYGqTGSGKTyTm 185 (409)
.||.|.+ |+.+- +.|...+-.| ..-.++-||+.|+|||.+.
T Consensus 14 ~f~~iiG----q~~v~----~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A 55 (576)
T PRK14965 14 TFSDLTG----QEHVS----RTLQNAIDTGRVAHAFLFTGARGVGKTSTA 55 (576)
T ss_pred CHHHccC----cHHHH----HHHHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 3666665 44433 3344444455 3456678999999999865
No 452
>PRK10865 protein disaggregation chaperone; Provisional
Probab=27.84 E-value=21 Score=40.55 Aligned_cols=42 Identities=29% Similarity=0.409 Sum_probs=29.2
Q ss_pred eceEeCCCCCchhhhccchHHHHHHHhcCcceEEEeeccCCCCceeeecC
Q psy4062 138 FDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLG 187 (409)
Q Consensus 138 FD~VF~~~asQ~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G 187 (409)
+|-|++.+. .+..+++-+.......++-+|+.|+|||+...|
T Consensus 177 l~~vigr~~--------ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~ 218 (857)
T PRK10865 177 LDPVIGRDE--------EIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEG 218 (857)
T ss_pred CCcCCCCHH--------HHHHHHHHHhcCCcCceEEECCCCCCHHHHHHH
Confidence 666666532 245566555555555677899999999999876
No 453
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=27.75 E-value=41 Score=34.71 Aligned_cols=19 Identities=16% Similarity=0.371 Sum_probs=15.7
Q ss_pred cceEEEeeccCCCCceeee
Q psy4062 167 YNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 167 ~N~tI~aYGqTGSGKTyTm 185 (409)
..-.++-||+.|+|||...
T Consensus 35 l~ha~Lf~Gp~G~GKt~lA 53 (394)
T PRK07940 35 MTHAWLFTGPPGSGRSVAA 53 (394)
T ss_pred CCeEEEEECCCCCcHHHHH
Confidence 5677999999999998544
No 454
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=27.69 E-value=27 Score=31.77 Aligned_cols=13 Identities=38% Similarity=0.902 Sum_probs=11.1
Q ss_pred EEeeccCCCCcee
Q psy4062 171 VFVYGATGAGKTH 183 (409)
Q Consensus 171 I~aYGqTGSGKTy 183 (409)
|+-.|++|||||+
T Consensus 3 iiilG~pGaGK~T 15 (178)
T COG0563 3 ILILGPPGAGKST 15 (178)
T ss_pred EEEECCCCCCHHH
Confidence 6778999999975
No 455
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=27.66 E-value=23 Score=33.18 Aligned_cols=16 Identities=31% Similarity=0.544 Sum_probs=13.6
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
...-.|+.|||||..|
T Consensus 25 ~~~i~GpNGsGKStll 40 (243)
T cd03272 25 HNVVVGRNGSGKSNFF 40 (243)
T ss_pred cEEEECCCCCCHHHHH
Confidence 4557899999999987
No 456
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=27.60 E-value=29 Score=31.23 Aligned_cols=15 Identities=27% Similarity=0.490 Sum_probs=12.8
Q ss_pred EEEeeccCCCCceee
Q psy4062 170 SVFVYGATGAGKTHT 184 (409)
Q Consensus 170 tI~aYGqTGSGKTyT 184 (409)
.++..|.+|||||.-
T Consensus 3 ~ili~G~~~sGKS~~ 17 (170)
T PRK05800 3 LILVTGGARSGKSRF 17 (170)
T ss_pred EEEEECCCCccHHHH
Confidence 478999999999854
No 457
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=27.51 E-value=36 Score=38.18 Aligned_cols=42 Identities=24% Similarity=0.355 Sum_probs=26.5
Q ss_pred eceEeCCCCCchhhhccchHHHHHHHhcCcceEEEeeccCCCCceeeecC
Q psy4062 138 FDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLG 187 (409)
Q Consensus 138 FD~VF~~~asQ~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G 187 (409)
+|.+++.+. .+..+++-+.......++-||++|+|||+...|
T Consensus 185 ~~~liGR~~--------ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~ 226 (758)
T PRK11034 185 IDPLIGREK--------ELERAIQVLCRRRKNNPLLVGESGVGKTAIAEG 226 (758)
T ss_pred CCcCcCCCH--------HHHHHHHHHhccCCCCeEEECCCCCCHHHHHHH
Confidence 666666533 234444444433333446699999999999876
No 458
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=27.47 E-value=30 Score=30.83 Aligned_cols=16 Identities=25% Similarity=0.499 Sum_probs=13.5
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
.|+..|..|||||...
T Consensus 4 ~i~l~G~~gsGKst~a 19 (175)
T cd00227 4 IIILNGGSSAGKSSIA 19 (175)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5888999999998654
No 459
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=27.42 E-value=33 Score=30.77 Aligned_cols=17 Identities=35% Similarity=0.622 Sum_probs=14.6
Q ss_pred eEEEeeccCCCCceeee
Q psy4062 169 CSVFVYGATGAGKTHTM 185 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm 185 (409)
..|+..|.+|||||...
T Consensus 5 ~~I~liG~~GaGKStl~ 21 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIG 21 (172)
T ss_pred CEEEEECCCCcCHHHHH
Confidence 36899999999999775
No 460
>TIGR03783 Bac_Flav_CT_G Bacteroides conjugation system ATPase, TraG family. Members of this family include the predicted ATPase, TraG, encoded by transfer region genes of conjugative transposons of Bacteroides, such as CTnDOT, found on the main chromosome. Members also include TraG homologs borne on plasmids in Bacteroides. The protein family is related to the conjugative transfer system ATPase VirB4.
Probab=27.40 E-value=21 Score=40.50 Aligned_cols=18 Identities=33% Similarity=0.656 Sum_probs=16.4
Q ss_pred ceEEEeeccCCCCceeee
Q psy4062 168 NCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 168 N~tI~aYGqTGSGKTyTm 185 (409)
|.-.+..|+||||||..|
T Consensus 438 n~N~~I~G~sGsGKS~l~ 455 (829)
T TIGR03783 438 NRNKFILGPSGSGKSFFT 455 (829)
T ss_pred cCceEEECCCCCCHHHHH
Confidence 677899999999999988
No 461
>KOG0924|consensus
Probab=27.38 E-value=34 Score=37.83 Aligned_cols=20 Identities=40% Similarity=0.564 Sum_probs=17.5
Q ss_pred CcceEEEeeccCCCCceeee
Q psy4062 166 GYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 166 G~N~tI~aYGqTGSGKTyTm 185 (409)
+-|-.|+..|.||||||.-+
T Consensus 369 r~n~vvvivgETGSGKTTQl 388 (1042)
T KOG0924|consen 369 RENQVVVIVGETGSGKTTQL 388 (1042)
T ss_pred hhCcEEEEEecCCCCchhhh
Confidence 56778899999999999877
No 462
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=27.21 E-value=23 Score=40.22 Aligned_cols=32 Identities=25% Similarity=0.339 Sum_probs=23.5
Q ss_pred hHHHHHHHhcCcceEEEeeccCCCCceeeecC
Q psy4062 156 TKDIIASLLEGYNCSVFVYGATGAGKTHTMLG 187 (409)
Q Consensus 156 ~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G 187 (409)
+..+++-+..+....++-+|++|+|||+...|
T Consensus 182 i~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~ 213 (852)
T TIGR03346 182 IRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEG 213 (852)
T ss_pred HHHHHHHHhcCCCCceEEEcCCCCCHHHHHHH
Confidence 56666655555555566799999999998865
No 463
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=27.19 E-value=26 Score=33.20 Aligned_cols=15 Identities=27% Similarity=0.525 Sum_probs=13.2
Q ss_pred EEeeccCCCCceeee
Q psy4062 171 VFVYGATGAGKTHTM 185 (409)
Q Consensus 171 I~aYGqTGSGKTyTm 185 (409)
|+-.|..|||||+..
T Consensus 2 Ivl~G~pGSGKST~a 16 (249)
T TIGR03574 2 IILTGLPGVGKSTFS 16 (249)
T ss_pred EEEEcCCCCCHHHHH
Confidence 678999999999875
No 464
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=27.18 E-value=51 Score=33.34 Aligned_cols=33 Identities=24% Similarity=0.330 Sum_probs=24.7
Q ss_pred ccchHHHHHHHhcC-c--ceEEEeeccCCCCceeee
Q psy4062 153 DGSTKDIIASLLEG-Y--NCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 153 ~~~~~plV~~vl~G-~--N~tI~aYGqTGSGKTyTm 185 (409)
-.++-+-+|.+|.| + ...+..||..|+|||.-.
T Consensus 105 i~tG~~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~ 140 (342)
T PLN03186 105 ITTGSRELDKILEGGIETGSITEIYGEFRTGKTQLC 140 (342)
T ss_pred eCCCCHHHHHhhcCCCcCceEEEEECCCCCCccHHH
Confidence 34567778998875 3 345678999999999755
No 465
>PLN02200 adenylate kinase family protein
Probab=27.15 E-value=30 Score=32.90 Aligned_cols=33 Identities=27% Similarity=0.309 Sum_probs=19.8
Q ss_pred eEEEeeccCCCCceeeecCCCCCCchhhhhhhh
Q psy4062 169 CSVFVYGATGAGKTHTMLGNENHKGIMYLTMGI 201 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm~G~~~~~GIi~~~~~~ 201 (409)
..|+..|..|||||.--..-....|+......+
T Consensus 44 ~ii~I~G~PGSGKsT~a~~La~~~g~~his~gd 76 (234)
T PLN02200 44 FITFVLGGPGSGKGTQCEKIVETFGFKHLSAGD 76 (234)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCeEEEccH
Confidence 467889999999987632212233444444433
No 466
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=27.07 E-value=26 Score=31.33 Aligned_cols=28 Identities=29% Similarity=0.432 Sum_probs=17.8
Q ss_pred HHHHHhcCcc---eEEEeeccCCCCceeeec
Q psy4062 159 IIASLLEGYN---CSVFVYGATGAGKTHTML 186 (409)
Q Consensus 159 lV~~vl~G~N---~tI~aYGqTGSGKTyTm~ 186 (409)
-++.++.|+- .-++-+|++|+|||+.+.
T Consensus 20 ~~~~li~g~~~~g~l~~i~g~~g~GKT~~~~ 50 (193)
T PF13481_consen 20 PLDWLIDGLLPRGELTLIAGPPGSGKTTLAL 50 (193)
T ss_dssp ---EEETTEE-TTSEEEEEECSTSSHHHHHH
T ss_pred CcceeECCcccCCeEEEEEeCCCCCHHHHHH
Confidence 3444444442 356789999999998764
No 467
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=27.06 E-value=25 Score=35.56 Aligned_cols=30 Identities=27% Similarity=0.380 Sum_probs=19.3
Q ss_pred HHHHHHHhcCcceEEEeeccCCCCceeeecC
Q psy4062 157 KDIIASLLEGYNCSVFVYGATGAGKTHTMLG 187 (409)
Q Consensus 157 ~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G 187 (409)
.+.++.+....+- +.-.|.||||||.+|.-
T Consensus 131 ~~~~~~~~~~~~~-ivl~G~TGsGKT~iL~~ 160 (345)
T PRK11784 131 IDTLEEAPAQFPL-VVLGGNTGSGKTELLQA 160 (345)
T ss_pred HHHHhhhcccCce-EecCCCCcccHHHHHHH
Confidence 3444443334443 45789999999988853
No 468
>PRK06851 hypothetical protein; Provisional
Probab=26.89 E-value=33 Score=35.13 Aligned_cols=27 Identities=33% Similarity=0.609 Sum_probs=23.6
Q ss_pred HHHHHhcCcceEEEeeccCCCCceeee
Q psy4062 159 IIASLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 159 lV~~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
.++.++++.+-.++--|.+|+|||..|
T Consensus 205 ~~~~l~~~~~~~~~i~G~pG~GKstl~ 231 (367)
T PRK06851 205 FVPSLTEGVKNRYFLKGRPGTGKSTML 231 (367)
T ss_pred hHHhHhcccceEEEEeCCCCCcHHHHH
Confidence 677888898999999999999998776
No 469
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=26.84 E-value=28 Score=31.76 Aligned_cols=15 Identities=27% Similarity=0.503 Sum_probs=10.9
Q ss_pred EEeeccCCCCceeee
Q psy4062 171 VFVYGATGAGKTHTM 185 (409)
Q Consensus 171 I~aYGqTGSGKTyTm 185 (409)
.+-+|..|||||+.+
T Consensus 3 ~~~~G~pGsGKS~~a 17 (193)
T PF05707_consen 3 YLITGKPGSGKSYYA 17 (193)
T ss_dssp EEEE--TTSSHHHHH
T ss_pred EEEEcCCCCcHhHHH
Confidence 467899999999876
No 470
>PRK14528 adenylate kinase; Provisional
Probab=26.83 E-value=28 Score=31.58 Aligned_cols=16 Identities=31% Similarity=0.596 Sum_probs=13.4
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
-|+..|+.|||||+..
T Consensus 3 ~i~i~G~pGsGKtt~a 18 (186)
T PRK14528 3 NIIFMGPPGAGKGTQA 18 (186)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3788999999998764
No 471
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=26.79 E-value=16 Score=32.43 Aligned_cols=13 Identities=31% Similarity=0.601 Sum_probs=11.1
Q ss_pred eccCCCCceeeec
Q psy4062 174 YGATGAGKTHTML 186 (409)
Q Consensus 174 YGqTGSGKTyTm~ 186 (409)
.|.+|||||+.+.
T Consensus 1 ~G~sGsGKSTla~ 13 (163)
T PRK11545 1 MGVSGSGKSAVAS 13 (163)
T ss_pred CCCCCCcHHHHHH
Confidence 4899999999874
No 472
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=26.58 E-value=44 Score=32.62 Aligned_cols=30 Identities=13% Similarity=0.288 Sum_probs=20.7
Q ss_pred hHHHHHHHhc-CcceEEEeeccCCCCceeee
Q psy4062 156 TKDIIASLLE-GYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 156 ~~plV~~vl~-G~N~tI~aYGqTGSGKTyTm 185 (409)
...++..+++ |--..+.-+|++|||||..+
T Consensus 98 ~~~~l~~l~~~~~~~~~~i~g~~g~GKttl~ 128 (270)
T TIGR02858 98 ADKLLPYLVRNNRVLNTLIISPPQCGKTTLL 128 (270)
T ss_pred HHHHHHHHHhCCCeeEEEEEcCCCCCHHHHH
Confidence 3445555553 32246788999999999877
No 473
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=26.52 E-value=23 Score=31.39 Aligned_cols=15 Identities=27% Similarity=0.408 Sum_probs=11.9
Q ss_pred EeeccCCCCceeeec
Q psy4062 172 FVYGATGAGKTHTML 186 (409)
Q Consensus 172 ~aYGqTGSGKTyTm~ 186 (409)
...|.+|||||..+.
T Consensus 3 ~i~G~~gsGKTtl~~ 17 (155)
T TIGR00176 3 QIVGPKNSGKTTLIE 17 (155)
T ss_pred EEECCCCCCHHHHHH
Confidence 446999999998763
No 474
>PRK04182 cytidylate kinase; Provisional
Probab=26.50 E-value=32 Score=30.20 Aligned_cols=16 Identities=31% Similarity=0.549 Sum_probs=13.1
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
.|+-.|..|||||...
T Consensus 2 ~I~i~G~~GsGKstia 17 (180)
T PRK04182 2 IITISGPPGSGKTTVA 17 (180)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3677899999999854
No 475
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=26.44 E-value=23 Score=36.03 Aligned_cols=17 Identities=24% Similarity=0.460 Sum_probs=14.9
Q ss_pred EEEeeccCCCCceeeec
Q psy4062 170 SVFVYGATGAGKTHTML 186 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm~ 186 (409)
-++++|..|||||+++.
T Consensus 3 ~~i~~GgrgSGKS~~~~ 19 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIA 19 (396)
T ss_pred eEEEeCCCCcccHHHHH
Confidence 46899999999999984
No 476
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=26.42 E-value=21 Score=37.98 Aligned_cols=14 Identities=50% Similarity=0.959 Sum_probs=12.0
Q ss_pred eeccCCCCceeeec
Q psy4062 173 VYGATGAGKTHTML 186 (409)
Q Consensus 173 aYGqTGSGKTyTm~ 186 (409)
-+|.||||||-.++
T Consensus 2 L~g~TGsGKT~v~l 15 (505)
T TIGR00595 2 LFGVTGSGKTEVYL 15 (505)
T ss_pred ccCCCCCCHHHHHH
Confidence 58999999998764
No 477
>PRK02496 adk adenylate kinase; Provisional
Probab=26.35 E-value=33 Score=30.73 Aligned_cols=15 Identities=33% Similarity=0.592 Sum_probs=12.5
Q ss_pred EEeeccCCCCceeee
Q psy4062 171 VFVYGATGAGKTHTM 185 (409)
Q Consensus 171 I~aYGqTGSGKTyTm 185 (409)
|+..|+.|||||...
T Consensus 4 i~i~G~pGsGKst~a 18 (184)
T PRK02496 4 LIFLGPPGAGKGTQA 18 (184)
T ss_pred EEEECCCCCCHHHHH
Confidence 677899999998754
No 478
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=26.30 E-value=34 Score=37.17 Aligned_cols=27 Identities=30% Similarity=0.459 Sum_probs=18.9
Q ss_pred HHHHHhcCc-ceEEEeeccCCCCceeee
Q psy4062 159 IIASLLEGY-NCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 159 lV~~vl~G~-N~tI~aYGqTGSGKTyTm 185 (409)
|...+-.|. ...++-||+.|+|||.+.
T Consensus 28 L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA 55 (585)
T PRK14950 28 LRNAIAEGRVAHAYLFTGPRGVGKTSTA 55 (585)
T ss_pred HHHHHHhCCCceEEEEECCCCCCHHHHH
Confidence 333344454 345789999999999876
No 479
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=26.25 E-value=48 Score=35.86 Aligned_cols=41 Identities=22% Similarity=0.464 Sum_probs=24.5
Q ss_pred eeceEeCCCCCchhhhccchHHHHHHHhcC-cceEEEeeccCCCCceeee
Q psy4062 137 LFDRVYGPSESNQDVYDGSTKDIIASLLEG-YNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 137 ~FD~VF~~~asQ~eVf~~~~~plV~~vl~G-~N~tI~aYGqTGSGKTyTm 185 (409)
.||.|.+ |+.+.+ -+-..+-.| ..-.++-||+.|+|||.+.
T Consensus 14 ~f~~viG----q~~v~~----~L~~~i~~~~~~hayLf~Gp~GtGKTt~A 55 (559)
T PRK05563 14 TFEDVVG----QEHITK----TLKNAIKQGKISHAYLFSGPRGTGKTSAA 55 (559)
T ss_pred cHHhccC----cHHHHH----HHHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 3666665 444433 333333344 3445667999999999665
No 480
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=26.21 E-value=41 Score=33.62 Aligned_cols=17 Identities=41% Similarity=0.489 Sum_probs=15.0
Q ss_pred eEEEEEEeCCCCccccc
Q psy4062 35 HMKVYIRVRPQSQKEED 51 (409)
Q Consensus 35 ~~~v~~r~rp~~~~e~~ 51 (409)
+|.|+||+||+...|..
T Consensus 2 ~i~V~vRvRP~~~~e~~ 18 (341)
T cd01372 2 SVRVAVRVRPLLPKELL 18 (341)
T ss_pred CeEEEEECCCCCchhcc
Confidence 68999999999988864
No 481
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=26.07 E-value=39 Score=28.91 Aligned_cols=17 Identities=18% Similarity=0.446 Sum_probs=13.8
Q ss_pred eEEEeeccCCCCceeee
Q psy4062 169 CSVFVYGATGAGKTHTM 185 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm 185 (409)
.-|+..|.+|+|||.-+
T Consensus 2 ~ki~v~G~~~~GKSsli 18 (163)
T cd01860 2 FKLVLLGDSSVGKSSLV 18 (163)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35788999999998654
No 482
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=26.05 E-value=29 Score=33.33 Aligned_cols=28 Identities=36% Similarity=0.712 Sum_probs=20.5
Q ss_pred HHhcCcceEEE------eeccCCCCce---eeecCCC
Q psy4062 162 SLLEGYNCSVF------VYGATGAGKT---HTMLGNE 189 (409)
Q Consensus 162 ~vl~G~N~tI~------aYGqTGSGKT---yTm~G~~ 189 (409)
.+|.|.|-+|- -.|+.||||+ ||++|.+
T Consensus 18 eILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p 54 (251)
T COG0396 18 EILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHP 54 (251)
T ss_pred hhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 56777776643 3899999997 5677765
No 483
>KOG1532|consensus
Probab=25.94 E-value=38 Score=33.48 Aligned_cols=19 Identities=37% Similarity=0.552 Sum_probs=16.7
Q ss_pred ceEEEeeccCCCCceeeec
Q psy4062 168 NCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 168 N~tI~aYGqTGSGKTyTm~ 186 (409)
-+||+..|..|||||.-|.
T Consensus 19 p~~ilVvGMAGSGKTTF~Q 37 (366)
T KOG1532|consen 19 PVIILVVGMAGSGKTTFMQ 37 (366)
T ss_pred CcEEEEEecCCCCchhHHH
Confidence 4799999999999998774
No 484
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=25.91 E-value=26 Score=39.73 Aligned_cols=18 Identities=28% Similarity=0.656 Sum_probs=15.9
Q ss_pred ceEEEeeccCCCCceeee
Q psy4062 168 NCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 168 N~tI~aYGqTGSGKTyTm 185 (409)
++-.+..|+||||||..|
T Consensus 456 ~g~~~i~G~tGsGKS~l~ 473 (818)
T PRK13830 456 VGHTLIFGPTGSGKSTLL 473 (818)
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 556899999999999988
No 485
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=25.86 E-value=39 Score=33.94 Aligned_cols=17 Identities=41% Similarity=0.712 Sum_probs=14.5
Q ss_pred eEEEEEEeCCCCccccc
Q psy4062 35 HMKVYIRVRPQSQKEED 51 (409)
Q Consensus 35 ~~~v~~r~rp~~~~e~~ 51 (409)
+|.|+||+||+...|.+
T Consensus 1 ~i~V~vRvRP~~~~E~~ 17 (338)
T cd01370 1 SLTVAVRVRPFNEKEKQ 17 (338)
T ss_pred CeEEEEEcCCCChhhhh
Confidence 48999999999988753
No 486
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=25.70 E-value=47 Score=39.21 Aligned_cols=26 Identities=31% Similarity=0.391 Sum_probs=19.9
Q ss_pred HHHHHHHhcCcceEEEeeccCCCCceee
Q psy4062 157 KDIIASLLEGYNCSVFVYGATGAGKTHT 184 (409)
Q Consensus 157 ~plV~~vl~G~N~tI~aYGqTGSGKTyT 184 (409)
+..+..++.|.+.. +.++||||||+.
T Consensus 84 ~~~i~~il~G~d~v--i~ApTGsGKT~f 109 (1171)
T TIGR01054 84 KMWAKRVLRGDSFA--IIAPTGVGKTTF 109 (1171)
T ss_pred HHHHHHHhCCCeEE--EECCCCCCHHHH
Confidence 34566789998764 667999999963
No 487
>KOG0744|consensus
Probab=25.58 E-value=41 Score=34.07 Aligned_cols=21 Identities=29% Similarity=0.490 Sum_probs=16.1
Q ss_pred cceEEEeeccCCCCceeeecC
Q psy4062 167 YNCSVFVYGATGAGKTHTMLG 187 (409)
Q Consensus 167 ~N~tI~aYGqTGSGKTyTm~G 187 (409)
.|-.|+..|+.|+|||.-.-+
T Consensus 176 ~NRliLlhGPPGTGKTSLCKa 196 (423)
T KOG0744|consen 176 WNRLILLHGPPGTGKTSLCKA 196 (423)
T ss_pred eeeEEEEeCCCCCChhHHHHH
Confidence 345577899999999976644
No 488
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=25.56 E-value=41 Score=38.19 Aligned_cols=26 Identities=23% Similarity=0.245 Sum_probs=18.8
Q ss_pred HHHHHHhcCcceEEEeeccCCCCceee
Q psy4062 158 DIIASLLEGYNCSVFVYGATGAGKTHT 184 (409)
Q Consensus 158 plV~~vl~G~N~tI~aYGqTGSGKTyT 184 (409)
.++..+++|.+- ++.--+||||||..
T Consensus 22 ~~i~~il~G~~~-v~~~apTGSGKTaa 47 (844)
T TIGR02621 22 SLAERFVAGQPP-ESCSTPTGLGKTSI 47 (844)
T ss_pred HHHHHHHcCCCc-ceEecCCCCcccHH
Confidence 355567899853 45556999999984
No 489
>KOG0925|consensus
Probab=25.52 E-value=38 Score=35.96 Aligned_cols=20 Identities=35% Similarity=0.484 Sum_probs=17.8
Q ss_pred CcceEEEeeccCCCCceeee
Q psy4062 166 GYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 166 G~N~tI~aYGqTGSGKTyTm 185 (409)
+.|.+|...|.||||||.-+
T Consensus 60 ~~nQ~~v~vGetgsGKttQi 79 (699)
T KOG0925|consen 60 LNNQIIVLVGETGSGKTTQI 79 (699)
T ss_pred hcCceEEEEecCCCCccccC
Confidence 56889999999999999876
No 490
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=25.44 E-value=35 Score=29.05 Aligned_cols=16 Identities=44% Similarity=0.625 Sum_probs=12.9
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
-|..+|.+|+|||.-+
T Consensus 2 ki~~~G~~~~GKTsl~ 17 (164)
T cd04139 2 KVIVVGAGGVGKSALT 17 (164)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3677999999999753
No 491
>KOG0730|consensus
Probab=25.43 E-value=21 Score=39.02 Aligned_cols=27 Identities=33% Similarity=0.509 Sum_probs=19.4
Q ss_pred eEEEeeccCCCCceeeecCCCCCCchh
Q psy4062 169 CSVFVYGATGAGKTHTMLGNENHKGIM 195 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm~G~~~~~GIi 195 (409)
-.|+.||+.|+|||....--..+.|+-
T Consensus 469 kGVLlyGPPGC~KT~lAkalAne~~~n 495 (693)
T KOG0730|consen 469 KGVLLYGPPGCGKTLLAKALANEAGMN 495 (693)
T ss_pred ceEEEECCCCcchHHHHHHHhhhhcCC
Confidence 569999999999998765433333433
No 492
>PRK02362 ski2-like helicase; Provisional
Probab=25.36 E-value=44 Score=37.26 Aligned_cols=21 Identities=38% Similarity=0.420 Sum_probs=16.2
Q ss_pred HhcCcceEEEeeccCCCCceeee
Q psy4062 163 LLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 163 vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
+++|.|+ +...+||||||...
T Consensus 36 ~~~g~nv--lv~APTGSGKTlia 56 (737)
T PRK02362 36 LLDGKNL--LAAIPTASGKTLIA 56 (737)
T ss_pred HhCCCcE--EEECCCcchHHHHH
Confidence 5678765 55669999999874
No 493
>PRK01184 hypothetical protein; Provisional
Probab=25.34 E-value=31 Score=30.86 Aligned_cols=15 Identities=33% Similarity=0.423 Sum_probs=12.8
Q ss_pred EEEeeccCCCCceee
Q psy4062 170 SVFVYGATGAGKTHT 184 (409)
Q Consensus 170 tI~aYGqTGSGKTyT 184 (409)
.|+..|..|||||+.
T Consensus 3 ~i~l~G~~GsGKsT~ 17 (184)
T PRK01184 3 IIGVVGMPGSGKGEF 17 (184)
T ss_pred EEEEECCCCCCHHHH
Confidence 467799999999984
No 494
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=25.28 E-value=31 Score=31.03 Aligned_cols=15 Identities=27% Similarity=0.496 Sum_probs=12.6
Q ss_pred EEeeccCCCCceeee
Q psy4062 171 VFVYGATGAGKTHTM 185 (409)
Q Consensus 171 I~aYGqTGSGKTyTm 185 (409)
|.-.|..|||||+..
T Consensus 2 i~itG~~gsGKst~~ 16 (179)
T cd02022 2 IGLTGGIGSGKSTVA 16 (179)
T ss_pred EEEECCCCCCHHHHH
Confidence 677899999999764
No 495
>PTZ00301 uridine kinase; Provisional
Probab=25.23 E-value=30 Score=32.35 Aligned_cols=15 Identities=33% Similarity=0.572 Sum_probs=11.8
Q ss_pred EEeeccCCCCceeee
Q psy4062 171 VFVYGATGAGKTHTM 185 (409)
Q Consensus 171 I~aYGqTGSGKTyTm 185 (409)
|---|.+|||||+.-
T Consensus 6 IgIaG~SgSGKTTla 20 (210)
T PTZ00301 6 IGISGASGSGKSSLS 20 (210)
T ss_pred EEEECCCcCCHHHHH
Confidence 445799999999853
No 496
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=25.17 E-value=34 Score=36.78 Aligned_cols=42 Identities=26% Similarity=0.410 Sum_probs=26.7
Q ss_pred eeceEeCCCCCchhhhccchHHHHHHHhcCc-ceEEEeeccCCCCceeeec
Q psy4062 137 LFDRVYGPSESNQDVYDGSTKDIIASLLEGY-NCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 137 ~FD~VF~~~asQ~eVf~~~~~plV~~vl~G~-N~tI~aYGqTGSGKTyTm~ 186 (409)
.||.|.+ |+.+ ++.+...+-.|. ...++-||+.|+|||.+..
T Consensus 12 ~fdeiiG----qe~v----~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar 54 (535)
T PRK08451 12 HFDELIG----QESV----SKTLSLALDNNRLAHAYLFSGLRGSGKTSSAR 54 (535)
T ss_pred CHHHccC----cHHH----HHHHHHHHHcCCCCeeEEEECCCCCcHHHHHH
Confidence 3777766 3433 233444444553 3456899999999998763
No 497
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=25.09 E-value=34 Score=30.90 Aligned_cols=16 Identities=31% Similarity=0.520 Sum_probs=13.6
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
.+...|.+|||||+.+
T Consensus 5 ~i~l~G~sGsGKSTl~ 20 (176)
T PRK09825 5 SYILMGVSGSGKSLIG 20 (176)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677999999999865
No 498
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=25.07 E-value=29 Score=38.63 Aligned_cols=20 Identities=25% Similarity=0.473 Sum_probs=15.9
Q ss_pred ceEEEeeccCCCCceeeecC
Q psy4062 168 NCSVFVYGATGAGKTHTMLG 187 (409)
Q Consensus 168 N~tI~aYGqTGSGKTyTm~G 187 (409)
.+.++..+..|||||.||..
T Consensus 22 ~g~~lV~AgaGSGKT~vl~~ 41 (721)
T PRK11773 22 LGNMLVLAGAGSGKTRVLVH 41 (721)
T ss_pred CCCEEEEecCCCCHHHHHHH
Confidence 34567777899999999953
No 499
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=25.04 E-value=30 Score=36.15 Aligned_cols=17 Identities=35% Similarity=0.620 Sum_probs=14.7
Q ss_pred eEEEeeccCCCCceeee
Q psy4062 169 CSVFVYGATGAGKTHTM 185 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm 185 (409)
..|+-+|++|+|||...
T Consensus 51 ~~ILliGp~G~GKT~LA 67 (443)
T PRK05201 51 KNILMIGPTGVGKTEIA 67 (443)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 67999999999999654
No 500
>KOG2035|consensus
Probab=24.95 E-value=64 Score=32.04 Aligned_cols=35 Identities=31% Similarity=0.595 Sum_probs=22.7
Q ss_pred hhccchHHHHHHHhc-CcceEEEeeccCCCCceeee
Q psy4062 151 VYDGSTKDIIASLLE-GYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 151 Vf~~~~~plV~~vl~-G~N~tI~aYGqTGSGKTyTm 185 (409)
.|..-..+.+.++.. |----++.||++|+||-..+
T Consensus 16 ~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTri 51 (351)
T KOG2035|consen 16 IYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRI 51 (351)
T ss_pred ccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhH
Confidence 334444566666554 43345899999999996654
Done!