Query psy4062
Match_columns 409
No_of_seqs 280 out of 1671
Neff 7.0
Searched_HMMs 29240
Date Sat Aug 17 00:21:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4062.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4062hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vvg_A Kinesin-2; motor protei 100.0 4.4E-78 1.5E-82 601.6 25.1 283 70-366 3-348 (350)
2 3lre_A Kinesin-like protein KI 100.0 3.9E-78 1.3E-82 603.8 23.2 281 70-353 9-355 (355)
3 1goj_A Kinesin, kinesin heavy 100.0 3.1E-77 1.1E-81 596.9 26.7 275 69-367 4-344 (355)
4 3b6u_A Kinesin-like protein KI 100.0 4.7E-77 1.6E-81 597.9 24.8 283 68-370 18-370 (372)
5 3bfn_A Kinesin-like protein KI 100.0 2.1E-77 7.3E-82 602.4 20.4 279 68-367 18-361 (388)
6 2wbe_C Bipolar kinesin KRP-130 100.0 6E-77 2.1E-81 598.4 23.0 274 69-363 21-371 (373)
7 3cob_A Kinesin heavy chain-lik 100.0 2E-76 6.8E-81 593.2 24.4 273 70-366 4-340 (369)
8 2y65_A Kinesin, kinesin heavy 100.0 1.3E-76 4.4E-81 594.1 23.0 282 68-377 8-357 (365)
9 1x88_A Kinesin-like protein KI 100.0 9E-77 3.1E-81 594.8 20.9 274 69-361 6-358 (359)
10 1bg2_A Kinesin; motor protein, 100.0 2.4E-76 8.3E-81 584.4 23.3 258 68-353 4-325 (325)
11 1t5c_A CENP-E protein, centrom 100.0 2.9E-76 9.9E-81 588.7 23.7 271 69-367 2-342 (349)
12 2zfi_A Kinesin-like protein KI 100.0 4.1E-76 1.4E-80 591.4 22.9 271 70-361 3-362 (366)
13 2h58_A Kinesin-like protein KI 100.0 7.3E-75 2.5E-79 574.9 24.4 260 70-354 3-329 (330)
14 2owm_A Nckin3-434, related to 100.0 6E-75 2.1E-79 594.9 23.9 283 69-362 36-422 (443)
15 1ry6_A Internal kinesin; kines 100.0 6.6E-75 2.3E-79 580.8 21.1 272 72-361 1-339 (360)
16 4a14_A Kinesin, kinesin-like p 100.0 1.4E-74 4.9E-79 576.4 23.4 260 66-351 6-344 (344)
17 3nwn_A Kinesin-like protein KI 100.0 1.2E-74 4E-79 578.7 22.1 267 68-353 21-359 (359)
18 3gbj_A KIF13B protein; kinesin 100.0 2.1E-74 7E-79 576.7 23.5 267 71-352 1-349 (354)
19 2rep_A Kinesin-like protein KI 100.0 2.7E-74 9.3E-79 579.0 22.9 281 52-353 12-376 (376)
20 3t0q_A AGR253WP; kinesin, alph 100.0 9.1E-74 3.1E-78 571.3 23.8 264 70-357 4-348 (349)
21 2heh_A KIF2C protein; kinesin, 100.0 8.5E-74 2.9E-78 576.0 20.0 268 69-356 49-385 (387)
22 1f9v_A Kinesin-like protein KA 100.0 1.8E-73 6E-78 568.6 22.0 269 70-358 2-346 (347)
23 3u06_A Protein claret segregat 100.0 2.3E-73 7.8E-78 578.4 23.0 280 52-363 49-393 (412)
24 3dc4_A Kinesin-like protein NO 100.0 1.5E-73 5.2E-78 567.8 20.9 256 67-357 18-339 (344)
25 1v8k_A Kinesin-like protein KI 100.0 3.1E-73 1.1E-77 575.3 18.9 270 69-358 69-407 (410)
26 2nr8_A Kinesin-like protein KI 100.0 1.3E-72 4.4E-77 563.8 21.9 269 66-353 18-358 (358)
27 4etp_A Kinesin-like protein KA 100.0 1.1E-72 3.9E-77 572.9 21.6 279 52-358 49-402 (403)
28 4h1g_A Maltose binding protein 100.0 5.2E-67 1.8E-71 568.0 22.7 269 70-354 373-712 (715)
29 2kin_B Kinesin; motor protein, 100.0 3.9E-31 1.3E-35 216.8 6.0 92 279-370 1-93 (100)
30 3kin_B Kinesin heavy chain; mo 99.9 7.2E-28 2.5E-32 203.6 7.3 86 283-368 1-87 (117)
31 2o0a_A S.cerevisiae chromosome 99.8 2.7E-19 9.2E-24 170.3 7.1 235 52-360 14-296 (298)
32 3ec2_A DNA replication protein 94.0 0.006 2E-07 53.4 -1.3 50 136-186 7-56 (180)
33 2w58_A DNAI, primosome compone 93.1 0.017 5.9E-07 51.2 0.0 51 135-186 21-72 (202)
34 2qgz_A Helicase loader, putati 92.0 0.031 1E-06 53.9 0.2 50 136-186 121-170 (308)
35 1jbk_A CLPB protein; beta barr 89.2 0.13 4.4E-06 43.9 1.6 30 156-185 31-60 (195)
36 2p65_A Hypothetical protein PF 87.7 0.14 4.8E-06 43.7 0.8 31 156-186 31-61 (187)
37 2bjv_A PSP operon transcriptio 87.4 0.12 4.3E-06 47.7 0.4 44 136-185 3-46 (265)
38 3t15_A Ribulose bisphosphate c 87.3 0.18 6.1E-06 48.0 1.4 36 150-185 14-53 (293)
39 2r62_A Cell division protease 86.8 0.12 4.1E-06 47.8 -0.1 51 135-186 7-62 (268)
40 3h4m_A Proteasome-activating n 84.5 0.17 5.8E-06 47.2 -0.3 51 135-185 13-68 (285)
41 3te6_A Regulatory protein SIR3 84.5 0.23 7.8E-06 48.2 0.6 24 162-185 39-62 (318)
42 1qde_A EIF4A, translation init 84.0 0.41 1.4E-05 42.7 2.0 24 159-184 44-67 (224)
43 3bos_A Putative DNA replicatio 83.6 0.5 1.7E-05 42.0 2.5 22 165-186 49-70 (242)
44 3cf0_A Transitional endoplasmi 83.3 0.2 6.9E-06 47.6 -0.4 50 136-185 12-66 (301)
45 2gxq_A Heat resistant RNA depe 83.0 0.48 1.6E-05 41.6 2.0 25 159-185 31-55 (207)
46 1g8p_A Magnesium-chelatase 38 82.8 0.31 1.1E-05 46.5 0.8 43 135-185 20-62 (350)
47 1l8q_A Chromosomal replication 82.6 0.3 1E-05 46.6 0.5 49 135-186 7-55 (324)
48 1ixz_A ATP-dependent metallopr 82.4 0.24 8.1E-06 45.5 -0.3 17 170-186 51-67 (254)
49 2chg_A Replication factor C sm 81.4 0.46 1.6E-05 41.4 1.3 23 163-185 33-55 (226)
50 1d2n_A N-ethylmaleimide-sensit 81.0 0.79 2.7E-05 42.4 2.8 21 165-185 61-81 (272)
51 1vec_A ATP-dependent RNA helic 80.1 0.97 3.3E-05 39.5 3.0 25 159-185 33-57 (206)
52 3uk6_A RUVB-like 2; hexameric 79.4 0.6 2.1E-05 45.0 1.5 47 135-186 40-88 (368)
53 3d8b_A Fidgetin-like protein 1 79.2 0.24 8.4E-06 48.3 -1.4 50 136-185 81-134 (357)
54 1p9r_A General secretion pathw 79.0 0.77 2.6E-05 46.2 2.1 30 157-186 156-185 (418)
55 1t6n_A Probable ATP-dependent 78.6 0.81 2.8E-05 40.6 2.0 25 159-185 44-68 (220)
56 3dkp_A Probable ATP-dependent 78.5 1.1 3.6E-05 40.7 2.8 25 158-184 58-82 (245)
57 3bor_A Human initiation factor 78.2 0.67 2.3E-05 42.0 1.3 26 158-185 59-84 (237)
58 3b9p_A CG5977-PA, isoform A; A 78.1 0.3 1E-05 45.8 -1.1 50 136-185 18-71 (297)
59 2kjq_A DNAA-related protein; s 77.9 0.61 2.1E-05 39.7 0.9 18 169-186 37-54 (149)
60 4b4t_M 26S protease regulatory 77.9 0.48 1.6E-05 48.0 0.2 50 136-185 178-232 (434)
61 2v1u_A Cell division control p 77.8 0.27 9.4E-06 47.3 -1.6 20 166-185 42-61 (387)
62 3b6e_A Interferon-induced heli 77.6 0.42 1.5E-05 42.0 -0.2 25 159-185 41-65 (216)
63 2pl3_A Probable ATP-dependent 77.0 1.2 4.2E-05 39.9 2.8 26 158-185 54-79 (236)
64 3ly5_A ATP-dependent RNA helic 77.0 0.85 2.9E-05 42.2 1.6 25 158-184 83-107 (262)
65 3jvv_A Twitching mobility prot 76.8 0.86 2.9E-05 44.8 1.7 29 158-186 113-141 (356)
66 2c9o_A RUVB-like 1; hexameric 76.4 1 3.5E-05 45.4 2.2 47 135-186 33-81 (456)
67 3iuy_A Probable ATP-dependent 76.1 1.3 4.6E-05 39.5 2.7 25 159-185 50-74 (228)
68 2z4s_A Chromosomal replication 75.9 0.85 2.9E-05 45.9 1.4 48 135-186 101-148 (440)
69 1iy2_A ATP-dependent metallopr 75.8 0.48 1.6E-05 44.2 -0.4 17 170-186 75-91 (278)
70 1xwi_A SKD1 protein; VPS4B, AA 75.6 0.37 1.3E-05 46.4 -1.3 49 137-185 10-62 (322)
71 1fnn_A CDC6P, cell division co 75.3 1 3.5E-05 43.3 1.8 46 136-186 14-62 (389)
72 1wrb_A DJVLGB; RNA helicase, D 75.2 1.5 5.1E-05 39.9 2.8 25 159-185 53-77 (253)
73 3n70_A Transport activator; si 74.3 1.2 3.9E-05 37.3 1.6 20 166-185 22-41 (145)
74 3co5_A Putative two-component 74.1 1.1 3.6E-05 37.5 1.4 19 168-186 27-45 (143)
75 1sxj_D Activator 1 41 kDa subu 74.0 1.1 3.6E-05 42.8 1.5 29 157-185 47-75 (353)
76 3fmo_B ATP-dependent RNA helic 73.6 1.5 5.2E-05 41.5 2.5 27 159-185 122-148 (300)
77 2oxc_A Probable ATP-dependent 72.8 1.9 6.4E-05 38.7 2.8 24 159-184 54-77 (230)
78 3ber_A Probable ATP-dependent 72.5 1.9 6.4E-05 39.5 2.8 25 159-185 73-97 (249)
79 3eiq_A Eukaryotic initiation f 72.4 1.9 6.3E-05 41.8 2.8 26 158-185 69-94 (414)
80 2qz4_A Paraplegin; AAA+, SPG7, 72.4 2 6.9E-05 38.9 2.9 20 167-186 38-57 (262)
81 3syl_A Protein CBBX; photosynt 72.3 1.8 6.1E-05 40.4 2.6 20 166-185 65-84 (309)
82 2x8a_A Nuclear valosin-contain 72.3 0.24 8.4E-06 46.6 -3.5 50 136-185 7-61 (274)
83 3llm_A ATP-dependent RNA helic 72.3 1.7 5.6E-05 39.4 2.3 27 157-185 67-93 (235)
84 3fe2_A Probable ATP-dependent 71.8 1.7 5.9E-05 39.3 2.3 25 159-185 59-83 (242)
85 3fmp_B ATP-dependent RNA helic 71.5 1.9 6.4E-05 43.3 2.7 26 159-184 122-147 (479)
86 1u0j_A DNA replication protein 70.8 2.1 7.3E-05 40.3 2.7 29 157-185 90-121 (267)
87 2eyu_A Twitching motility prot 70.6 1.5 5E-05 41.0 1.5 20 167-186 24-43 (261)
88 1njg_A DNA polymerase III subu 70.2 1.4 4.7E-05 38.7 1.2 18 169-186 46-63 (250)
89 1q0u_A Bstdead; DEAD protein, 70.1 1.4 4.7E-05 39.2 1.2 25 159-185 34-58 (219)
90 2qby_B CDC6 homolog 3, cell di 69.5 1.2 4E-05 43.0 0.6 45 136-185 17-62 (384)
91 3pvs_A Replication-associated 69.5 2.2 7.6E-05 43.1 2.7 44 138-186 25-68 (447)
92 3vfd_A Spastin; ATPase, microt 69.2 0.76 2.6E-05 45.2 -0.8 51 135-185 111-165 (389)
93 1sxj_C Activator 1 40 kDa subu 69.1 1.5 5.1E-05 42.1 1.3 29 158-186 36-64 (340)
94 2fz4_A DNA repair protein RAD2 68.7 2.1 7E-05 39.1 2.1 26 159-186 101-126 (237)
95 1lv7_A FTSH; alpha/beta domain 68.7 1.9 6.5E-05 39.3 1.9 18 168-185 45-62 (257)
96 1ofh_A ATP-dependent HSL prote 68.6 1.4 4.8E-05 40.9 1.0 18 168-185 50-67 (310)
97 2j0s_A ATP-dependent RNA helic 68.5 2.5 8.5E-05 41.0 2.8 25 159-185 67-91 (410)
98 3fht_A ATP-dependent RNA helic 67.6 2.4 8.4E-05 40.8 2.5 28 158-185 54-81 (412)
99 3h1t_A Type I site-specific re 67.2 1.8 6.1E-05 44.8 1.5 28 158-186 189-216 (590)
100 4fcw_A Chaperone protein CLPB; 66.8 1.4 4.7E-05 41.2 0.5 17 169-185 48-64 (311)
101 3pfi_A Holliday junction ATP-d 66.8 2.2 7.6E-05 40.5 2.0 45 137-186 27-73 (338)
102 1iqp_A RFCS; clamp loader, ext 66.8 1.8 6.3E-05 40.4 1.4 24 163-186 41-64 (327)
103 1tue_A Replication protein E1; 66.1 1.7 5.8E-05 39.6 0.9 27 160-186 48-76 (212)
104 3hu3_A Transitional endoplasmi 66.0 1.6 5.4E-05 44.8 0.8 20 166-185 236-255 (489)
105 3u61_B DNA polymerase accessor 65.9 2.3 7.8E-05 40.2 1.9 22 165-186 44-66 (324)
106 2qp9_X Vacuolar protein sortin 65.8 1.1 3.7E-05 43.7 -0.4 50 136-185 48-101 (355)
107 3oiy_A Reverse gyrase helicase 65.8 2.5 8.6E-05 41.3 2.2 24 159-184 29-52 (414)
108 4b4t_L 26S protease subunit RP 65.7 0.68 2.3E-05 46.9 -2.0 50 136-185 178-232 (437)
109 3pey_A ATP-dependent RNA helic 65.4 2.9 9.9E-05 39.9 2.5 27 159-185 35-61 (395)
110 2qby_A CDC6 homolog 1, cell di 64.8 0.91 3.1E-05 43.4 -1.2 21 166-186 43-63 (386)
111 1gvn_B Zeta; postsegregational 64.8 3.4 0.00011 39.0 2.8 31 155-185 15-50 (287)
112 1s2m_A Putative ATP-dependent 64.7 2.9 0.0001 40.3 2.4 25 159-185 51-75 (400)
113 2z0m_A 337AA long hypothetical 64.3 3.4 0.00012 38.5 2.8 25 159-185 24-48 (337)
114 2zan_A Vacuolar protein sortin 63.8 0.8 2.7E-05 46.2 -1.9 17 169-185 168-184 (444)
115 4b4t_J 26S protease regulatory 63.1 1.7 5.7E-05 43.6 0.3 50 136-185 145-199 (405)
116 2ewv_A Twitching motility prot 63.1 1.8 6.1E-05 42.6 0.5 27 160-186 128-154 (372)
117 2oap_1 GSPE-2, type II secreti 63.0 2.5 8.6E-05 43.5 1.6 21 164-186 258-278 (511)
118 1sxj_E Activator 1 40 kDa subu 62.8 2.4 8.2E-05 40.4 1.4 16 171-186 39-54 (354)
119 1n0w_A DNA repair protein RAD5 62.8 2.7 9.2E-05 37.5 1.6 32 155-186 8-42 (243)
120 2db3_A ATP-dependent RNA helic 62.5 3.7 0.00013 40.7 2.8 25 159-185 86-110 (434)
121 2i4i_A ATP-dependent RNA helic 62.3 3.8 0.00013 39.6 2.8 24 160-185 46-69 (417)
122 1rif_A DAR protein, DNA helica 62.1 1.8 6.2E-05 40.2 0.3 25 160-186 122-146 (282)
123 1hqc_A RUVB; extended AAA-ATPa 62.0 3 0.0001 39.1 1.9 20 166-185 36-55 (324)
124 4b4t_K 26S protease regulatory 62.0 0.89 3E-05 45.9 -2.0 50 136-185 169-223 (428)
125 3fho_A ATP-dependent RNA helic 61.1 2.7 9.4E-05 42.7 1.5 25 161-185 151-175 (508)
126 2chq_A Replication factor C sm 61.0 1.7 5.8E-05 40.5 -0.1 21 165-185 35-55 (319)
127 3i5x_A ATP-dependent RNA helic 60.6 4.7 0.00016 41.2 3.2 26 159-184 102-127 (563)
128 3eie_A Vacuolar protein sortin 60.0 2.6 8.7E-05 40.2 1.0 50 136-185 15-68 (322)
129 1sxj_B Activator 1 37 kDa subu 59.5 3.1 0.00011 38.7 1.5 27 159-185 33-59 (323)
130 1xti_A Probable ATP-dependent 59.1 4.7 0.00016 38.5 2.8 25 159-185 38-62 (391)
131 2r44_A Uncharacterized protein 59.1 1.4 5E-05 41.8 -1.0 27 158-186 38-64 (331)
132 1w5s_A Origin recognition comp 58.9 3.1 0.00011 40.3 1.4 25 161-185 40-69 (412)
133 1hv8_A Putative ATP-dependent 58.4 3.3 0.00011 39.1 1.5 25 160-185 37-61 (367)
134 2v1x_A ATP-dependent DNA helic 58.3 5.2 0.00018 41.8 3.1 25 158-184 51-75 (591)
135 1ojl_A Transcriptional regulat 57.8 3.6 0.00012 39.0 1.6 20 166-185 23-42 (304)
136 4b3f_X DNA-binding protein smu 57.6 3.6 0.00012 43.4 1.7 27 159-186 197-223 (646)
137 4a2p_A RIG-I, retinoic acid in 57.5 5 0.00017 40.4 2.8 25 159-185 15-39 (556)
138 4b4t_H 26S protease regulatory 57.5 1.3 4.6E-05 45.1 -1.6 50 136-185 206-260 (467)
139 2fwr_A DNA repair protein RAD2 56.8 3.9 0.00013 40.7 1.8 26 159-186 101-126 (472)
140 3pxg_A Negative regulator of g 56.8 5 0.00017 40.5 2.6 31 157-187 190-220 (468)
141 1in4_A RUVB, holliday junction 56.0 2.5 8.5E-05 40.6 0.1 16 170-185 53-68 (334)
142 2w0m_A SSO2452; RECA, SSPF, un 56.0 3.8 0.00013 36.0 1.4 30 157-186 9-41 (235)
143 1w36_D RECD, exodeoxyribonucle 55.8 4 0.00014 42.8 1.6 25 160-186 158-182 (608)
144 1qvr_A CLPB protein; coiled co 55.6 2.2 7.5E-05 46.6 -0.4 43 137-187 168-210 (854)
145 2ykg_A Probable ATP-dependent 54.8 5.8 0.0002 41.6 2.8 25 159-185 21-45 (696)
146 4b4t_I 26S protease regulatory 54.5 3.3 0.00011 41.8 0.7 50 136-185 179-233 (437)
147 4a74_A DNA repair and recombin 54.4 4.9 0.00017 35.4 1.8 30 156-185 10-42 (231)
148 1fuu_A Yeast initiation factor 54.0 3.6 0.00012 39.3 1.0 25 159-185 51-75 (394)
149 3tbk_A RIG-I helicase domain; 53.9 6.3 0.00022 39.5 2.8 25 159-185 12-36 (555)
150 4gl2_A Interferon-induced heli 53.1 6 0.00021 41.5 2.5 26 159-186 15-40 (699)
151 3upu_A ATP-dependent DNA helic 53.0 4.8 0.00017 40.4 1.7 37 145-186 27-63 (459)
152 3sqw_A ATP-dependent RNA helic 52.6 7.6 0.00026 40.0 3.2 26 159-184 51-76 (579)
153 2p5t_B PEZT; postsegregational 52.4 6.1 0.00021 36.1 2.2 31 155-185 14-49 (253)
154 1um8_A ATP-dependent CLP prote 52.4 3.3 0.00011 40.1 0.4 18 168-185 72-89 (376)
155 1jr3_A DNA polymerase III subu 52.2 5.5 0.00019 37.9 1.9 19 168-186 38-56 (373)
156 2cvh_A DNA repair and recombin 51.8 7.6 0.00026 33.9 2.6 30 156-185 5-37 (220)
157 1wp9_A ATP-dependent RNA helic 51.7 4.6 0.00016 39.3 1.3 25 159-186 17-41 (494)
158 1sxj_A Activator 1 95 kDa subu 51.5 5.5 0.00019 40.7 1.9 18 168-185 77-94 (516)
159 2gk6_A Regulator of nonsense t 51.4 5.1 0.00017 42.0 1.6 26 159-186 188-213 (624)
160 4gp7_A Metallophosphoesterase; 51.1 3.6 0.00012 35.3 0.3 17 170-186 11-27 (171)
161 3b85_A Phosphate starvation-in 50.9 5.6 0.00019 35.6 1.6 26 158-185 14-39 (208)
162 2jlq_A Serine protease subunit 50.9 4.6 0.00016 40.5 1.1 24 160-184 12-35 (451)
163 1rz3_A Hypothetical protein rb 50.7 6 0.0002 34.7 1.8 30 156-185 7-39 (201)
164 3c8u_A Fructokinase; YP_612366 50.2 6 0.0002 34.9 1.7 30 156-185 8-39 (208)
165 2ce7_A Cell division protein F 50.2 2 7E-05 43.8 -1.6 17 169-185 50-66 (476)
166 3hws_A ATP-dependent CLP prote 49.2 4.6 0.00016 39.0 0.8 18 168-185 51-68 (363)
167 3lw7_A Adenylate kinase relate 48.9 5.2 0.00018 33.2 1.0 16 170-185 3-18 (179)
168 1c4o_A DNA nucleotide excision 48.5 6 0.0002 41.9 1.6 40 143-187 8-47 (664)
169 1r6b_X CLPA protein; AAA+, N-t 47.8 6.2 0.00021 42.2 1.6 32 156-187 195-226 (758)
170 4ag6_A VIRB4 ATPase, type IV s 47.5 3.9 0.00013 40.0 -0.0 19 168-186 35-53 (392)
171 3pxi_A Negative regulator of g 47.4 9.3 0.00032 40.9 2.9 32 156-187 189-220 (758)
172 2dr3_A UPF0273 protein PH0284; 46.5 8.9 0.0003 34.0 2.3 28 158-185 10-40 (247)
173 3nbx_X ATPase RAVA; AAA+ ATPas 46.4 7.4 0.00025 39.9 1.8 28 157-186 32-59 (500)
174 2r8r_A Sensor protein; KDPD, P 45.9 4.5 0.00015 37.2 0.1 18 169-186 7-24 (228)
175 1e9r_A Conjugal transfer prote 45.4 4.1 0.00014 40.4 -0.3 18 168-185 53-70 (437)
176 2qag_C Septin-7; cell cycle, c 44.9 5.3 0.00018 40.0 0.5 23 163-185 26-48 (418)
177 3lfu_A DNA helicase II; SF1 he 44.6 5.6 0.00019 41.3 0.6 20 167-186 21-40 (647)
178 3tr0_A Guanylate kinase, GMP k 44.5 5.2 0.00018 34.6 0.3 16 170-185 9-24 (205)
179 4a2w_A RIG-I, retinoic acid in 44.4 7.4 0.00025 43.0 1.6 25 159-185 256-280 (936)
180 4a4z_A Antiviral helicase SKI2 44.3 11 0.00036 42.1 2.9 24 159-184 47-70 (997)
181 1kgd_A CASK, peripheral plasma 44.0 5.4 0.00019 34.3 0.3 16 170-185 7-22 (180)
182 1ly1_A Polynucleotide kinase; 43.9 6.9 0.00024 32.9 1.0 16 170-185 4-19 (181)
183 3tau_A Guanylate kinase, GMP k 43.9 5.4 0.00018 35.2 0.3 17 169-185 9-25 (208)
184 3cf2_A TER ATPase, transitiona 43.3 7.9 0.00027 42.1 1.5 50 136-185 201-255 (806)
185 2qnr_A Septin-2, protein NEDD5 43.3 5.4 0.00019 37.8 0.3 24 162-185 12-35 (301)
186 3trf_A Shikimate kinase, SK; a 43.1 7.2 0.00025 33.2 1.0 16 170-185 7-22 (185)
187 2xzl_A ATP-dependent helicase 42.6 8.3 0.00028 41.9 1.6 26 159-186 368-393 (802)
188 3a00_A Guanylate kinase, GMP k 42.5 5.2 0.00018 34.6 -0.0 15 171-185 4-18 (186)
189 1gm5_A RECG; helicase, replica 42.3 8.7 0.0003 41.6 1.7 23 163-185 384-406 (780)
190 3dc4_A Kinesin-like protein NO 42.2 13 0.00045 36.2 2.8 21 32-52 20-40 (344)
191 3e70_C DPA, signal recognition 42.0 9.6 0.00033 36.7 1.8 18 168-185 129-146 (328)
192 1odf_A YGR205W, hypothetical 3 42.0 9 0.00031 36.2 1.6 20 166-185 29-48 (290)
193 1gku_B Reverse gyrase, TOP-RG; 42.0 11 0.00037 42.3 2.4 23 159-183 64-86 (1054)
194 1r6b_X CLPA protein; AAA+, N-t 42.0 11 0.00039 40.1 2.6 17 169-185 489-505 (758)
195 3iij_A Coilin-interacting nucl 41.9 7.1 0.00024 33.2 0.8 16 170-185 13-28 (180)
196 3pxi_A Negative regulator of g 41.8 12 0.0004 40.1 2.7 16 170-185 523-538 (758)
197 3e1s_A Exodeoxyribonuclease V, 41.8 8.9 0.0003 39.9 1.6 26 159-186 197-222 (574)
198 4a2q_A RIG-I, retinoic acid in 41.7 12 0.00042 40.2 2.8 25 159-185 256-280 (797)
199 3sop_A Neuronal-specific septi 41.7 6.4 0.00022 36.8 0.5 19 167-185 1-19 (270)
200 2wjy_A Regulator of nonsense t 41.5 8.9 0.0003 41.6 1.6 26 159-186 364-389 (800)
201 1ye8_A Protein THEP1, hypothet 41.2 5.9 0.0002 34.5 0.1 15 171-185 3-17 (178)
202 1lkx_A Myosin IE heavy chain; 41.0 10 0.00035 40.6 1.9 35 150-185 76-111 (697)
203 1rj9_A FTSY, signal recognitio 40.8 7.2 0.00025 37.1 0.7 18 169-186 103-120 (304)
204 1lvg_A Guanylate kinase, GMP k 40.6 6.1 0.00021 34.7 0.1 16 170-185 6-21 (198)
205 1zp6_A Hypothetical protein AT 40.5 6.3 0.00021 33.7 0.2 17 169-185 10-26 (191)
206 2orw_A Thymidine kinase; TMTK, 40.5 4.9 0.00017 35.1 -0.5 17 170-186 5-21 (184)
207 1oyw_A RECQ helicase, ATP-depe 40.5 7.5 0.00026 39.8 0.8 26 158-185 32-57 (523)
208 1qvr_A CLPB protein; coiled co 40.4 12 0.0004 40.8 2.4 17 169-185 589-605 (854)
209 2b8t_A Thymidine kinase; deoxy 40.0 6 0.00021 36.0 -0.0 18 169-186 13-30 (223)
210 3b9q_A Chloroplast SRP recepto 40.0 6.7 0.00023 37.3 0.3 17 169-185 101-117 (302)
211 2qen_A Walker-type ATPase; unk 39.8 8.8 0.0003 35.8 1.1 17 169-185 32-48 (350)
212 2ehv_A Hypothetical protein PH 39.8 6.9 0.00024 34.9 0.3 18 169-186 31-48 (251)
213 1qhx_A CPT, protein (chloramph 39.7 9.9 0.00034 32.0 1.4 17 169-185 4-20 (178)
214 2px0_A Flagellar biosynthesis 39.1 6.8 0.00023 37.1 0.2 18 169-186 106-123 (296)
215 1w9i_A Myosin II heavy chain; 39.1 11 0.00039 40.7 1.9 21 165-185 169-189 (770)
216 2dhr_A FTSH; AAA+ protein, hex 39.1 6.6 0.00023 40.2 0.1 16 170-185 66-81 (499)
217 1uaa_A REP helicase, protein ( 39.0 7.8 0.00027 40.8 0.7 20 167-186 14-33 (673)
218 2oca_A DAR protein, ATP-depend 38.6 11 0.00038 37.8 1.7 25 160-186 122-146 (510)
219 2bdt_A BH3686; alpha-beta prot 38.5 7.5 0.00026 33.4 0.4 16 170-185 4-19 (189)
220 2v6i_A RNA helicase; membrane, 38.3 10 0.00036 37.6 1.4 16 170-185 4-19 (431)
221 2v26_A Myosin VI; calmodulin-b 38.3 12 0.0004 40.6 1.9 29 157-185 128-157 (784)
222 1ypw_A Transitional endoplasmi 38.2 7.4 0.00025 42.3 0.3 51 135-185 200-255 (806)
223 2j41_A Guanylate kinase; GMP, 38.2 7.5 0.00026 33.6 0.3 16 170-185 8-23 (207)
224 3lnc_A Guanylate kinase, GMP k 38.0 9 0.00031 34.2 0.8 16 170-185 29-44 (231)
225 2gza_A Type IV secretion syste 37.7 6.8 0.00023 38.1 -0.0 20 164-185 173-192 (361)
226 2p6r_A Afuhel308 helicase; pro 37.6 8.6 0.00029 40.7 0.7 31 145-185 27-57 (702)
227 4etp_B Spindle POLE BODY-assoc 37.5 28 0.00096 33.5 4.2 44 133-177 91-137 (333)
228 2ze6_A Isopentenyl transferase 37.1 11 0.00038 34.4 1.4 15 170-184 3-17 (253)
229 2pt7_A CAG-ALFA; ATPase, prote 37.1 6.6 0.00023 37.8 -0.2 19 165-185 170-188 (330)
230 1znw_A Guanylate kinase, GMP k 37.1 8.1 0.00028 33.9 0.4 16 170-185 22-37 (207)
231 3rc3_A ATP-dependent RNA helic 36.9 9.1 0.00031 40.8 0.8 21 162-184 151-171 (677)
232 1v5w_A DMC1, meiotic recombina 36.7 16 0.00055 35.1 2.5 32 155-186 106-140 (343)
233 2owm_A Nckin3-434, related to 36.6 11 0.00039 37.9 1.4 22 30-51 34-55 (443)
234 1kk8_A Myosin heavy chain, str 36.6 12 0.00042 40.8 1.8 21 165-185 166-186 (837)
235 4ddu_A Reverse gyrase; topoiso 36.5 15 0.00052 41.3 2.5 24 159-184 86-109 (1104)
236 2zj8_A DNA helicase, putative 36.5 9.2 0.00031 40.6 0.8 31 146-185 26-56 (720)
237 1kht_A Adenylate kinase; phosp 36.4 9.7 0.00033 32.3 0.8 16 170-185 5-20 (192)
238 1kag_A SKI, shikimate kinase I 36.4 9.7 0.00033 31.9 0.8 16 170-185 6-21 (173)
239 3l9o_A ATP-dependent RNA helic 36.4 13 0.00045 41.8 2.0 24 159-184 192-215 (1108)
240 2xgj_A ATP-dependent RNA helic 36.0 15 0.0005 41.0 2.3 23 161-185 96-118 (1010)
241 2va8_A SSO2462, SKI2-type heli 36.0 13 0.00045 39.2 1.9 20 164-185 44-63 (715)
242 1w7j_A Myosin VA; motor protei 35.9 13 0.00046 40.2 1.9 21 165-185 153-173 (795)
243 2fna_A Conserved hypothetical 35.9 14 0.00047 34.5 1.8 18 169-186 31-48 (357)
244 4db1_A Myosin-7; S1DC, cardiac 35.7 14 0.00047 40.1 1.9 21 165-185 168-188 (783)
245 3vaa_A Shikimate kinase, SK; s 35.7 12 0.00042 32.4 1.3 16 170-185 27-42 (199)
246 1g8x_A Myosin II heavy chain f 35.6 13 0.00045 41.5 1.8 21 165-185 169-189 (1010)
247 2ycu_A Non muscle myosin 2C, a 35.1 14 0.00048 41.2 1.9 21 165-185 143-163 (995)
248 2i1q_A DNA repair and recombin 35.0 17 0.00058 34.2 2.3 31 155-185 82-115 (322)
249 3kb2_A SPBC2 prophage-derived 35.0 12 0.0004 31.2 1.0 16 170-185 3-18 (173)
250 1f2t_A RAD50 ABC-ATPase; DNA d 34.8 15 0.0005 30.8 1.6 16 170-185 25-40 (149)
251 1xx6_A Thymidine kinase; NESG, 34.6 7.2 0.00025 34.5 -0.4 17 170-186 10-26 (191)
252 2z43_A DNA repair and recombin 34.5 16 0.00055 34.6 2.1 31 155-185 91-124 (324)
253 2i3b_A HCR-ntpase, human cance 34.4 8.5 0.00029 33.8 0.1 16 170-185 3-18 (189)
254 1pzn_A RAD51, DNA repair and r 34.4 18 0.00062 34.9 2.4 31 155-185 115-148 (349)
255 2og2_A Putative signal recogni 34.2 9.4 0.00032 37.4 0.3 17 169-185 158-174 (359)
256 1yks_A Genome polyprotein [con 34.1 13 0.00043 37.1 1.3 21 163-185 5-25 (440)
257 1i84_S Smooth muscle myosin he 33.9 14 0.00048 41.8 1.8 21 165-185 166-186 (1184)
258 2z83_A Helicase/nucleoside tri 33.8 14 0.00047 37.0 1.5 15 170-184 23-37 (459)
259 1z6g_A Guanylate kinase; struc 33.6 9.2 0.00031 34.1 0.1 15 171-185 26-40 (218)
260 2iut_A DNA translocase FTSK; n 33.6 9.1 0.00031 40.0 0.1 18 169-186 215-232 (574)
261 1vma_A Cell division protein F 33.4 10 0.00034 36.2 0.3 18 169-186 105-122 (306)
262 1y63_A LMAJ004144AAA protein; 33.4 12 0.0004 32.2 0.8 16 170-185 12-27 (184)
263 3kta_A Chromosome segregation 33.3 14 0.00047 31.4 1.2 16 170-185 28-43 (182)
264 2rhm_A Putative kinase; P-loop 33.3 11 0.00038 32.0 0.6 17 169-185 6-22 (193)
265 2dfs_A Myosin-5A; myosin-V, in 33.2 16 0.00053 41.2 1.9 21 165-185 153-173 (1080)
266 4anj_A Unconventional myosin-V 33.2 16 0.00054 41.0 1.9 35 150-185 126-161 (1052)
267 3t5d_A Septin-7; GTP-binding p 33.2 15 0.0005 33.9 1.5 22 164-185 4-25 (274)
268 1uf9_A TT1252 protein; P-loop, 33.2 14 0.0005 31.6 1.4 20 166-185 6-25 (203)
269 1tev_A UMP-CMP kinase; ploop, 33.0 13 0.00044 31.5 1.0 16 170-185 5-20 (196)
270 2eyq_A TRCF, transcription-rep 32.8 21 0.00073 40.3 3.0 26 159-184 615-640 (1151)
271 2r2a_A Uncharacterized protein 32.3 12 0.00042 33.2 0.8 16 170-185 7-22 (199)
272 2zts_A Putative uncharacterize 32.3 13 0.00045 32.8 1.0 28 158-185 17-47 (251)
273 1e6c_A Shikimate kinase; phosp 32.3 13 0.00043 31.1 0.8 16 170-185 4-19 (173)
274 1a5t_A Delta prime, HOLB; zinc 32.2 17 0.00059 34.5 1.9 28 158-185 13-41 (334)
275 2d7d_A Uvrabc system protein B 32.2 15 0.00052 38.8 1.6 47 136-187 5-51 (661)
276 2qor_A Guanylate kinase; phosp 32.1 14 0.00048 32.2 1.1 16 170-185 14-29 (204)
277 3cm0_A Adenylate kinase; ATP-b 32.0 14 0.00047 31.3 1.0 16 170-185 6-21 (186)
278 3m6a_A ATP-dependent protease 31.9 11 0.00037 38.9 0.3 18 168-185 108-125 (543)
279 3uie_A Adenylyl-sulfate kinase 31.8 22 0.00075 30.8 2.3 19 167-185 24-42 (200)
280 1t5c_A CENP-E protein, centrom 31.8 22 0.00074 34.6 2.5 20 32-51 2-21 (349)
281 2qmh_A HPR kinase/phosphorylas 31.7 14 0.00047 33.4 1.0 19 167-185 33-51 (205)
282 2ga8_A Hypothetical 39.9 kDa p 31.0 24 0.00081 34.6 2.6 21 165-185 21-41 (359)
283 3a8t_A Adenylate isopentenyltr 30.7 16 0.00056 35.4 1.4 16 170-185 42-57 (339)
284 2yhs_A FTSY, cell division pro 30.5 14 0.00049 37.8 1.0 17 169-185 294-310 (503)
285 3gbj_A KIF13B protein; kinesin 30.5 17 0.0006 35.4 1.6 18 34-51 1-18 (354)
286 2iyv_A Shikimate kinase, SK; t 30.2 14 0.00049 31.3 0.8 15 170-184 4-18 (184)
287 2vli_A Antibiotic resistance p 30.1 15 0.0005 31.0 0.8 17 169-185 6-22 (183)
288 2xau_A PRE-mRNA-splicing facto 30.0 18 0.00063 38.9 1.8 15 170-184 111-125 (773)
289 3crm_A TRNA delta(2)-isopenten 29.9 17 0.00058 35.0 1.3 16 169-184 6-21 (323)
290 2ius_A DNA translocase FTSK; n 29.8 12 0.00039 38.6 0.1 17 169-185 168-184 (512)
291 1c9k_A COBU, adenosylcobinamid 29.8 16 0.00054 32.2 1.0 14 171-184 2-15 (180)
292 1via_A Shikimate kinase; struc 29.7 15 0.0005 31.1 0.8 16 170-185 6-21 (175)
293 1nks_A Adenylate kinase; therm 29.7 14 0.00047 31.2 0.6 16 170-185 3-18 (194)
294 1moz_A ARL1, ADP-ribosylation 29.5 22 0.00074 29.6 1.8 27 159-185 8-35 (183)
295 3t61_A Gluconokinase; PSI-biol 29.5 15 0.0005 31.8 0.8 17 169-185 19-35 (202)
296 2bwj_A Adenylate kinase 5; pho 29.5 15 0.00053 31.3 0.9 16 170-185 14-29 (199)
297 1htw_A HI0065; nucleotide-bind 29.3 13 0.00044 31.7 0.4 17 169-185 34-50 (158)
298 1pjr_A PCRA; DNA repair, DNA r 29.3 13 0.00043 39.7 0.3 19 168-186 24-42 (724)
299 3asz_A Uridine kinase; cytidin 29.2 12 0.00043 32.5 0.2 16 170-185 8-23 (211)
300 2w00_A HSDR, R.ECOR124I; ATP-b 29.0 11 0.00037 42.3 -0.3 16 171-186 303-318 (1038)
301 1knq_A Gluconate kinase; ALFA/ 29.0 19 0.00065 30.2 1.4 17 169-185 9-25 (175)
302 2pt5_A Shikimate kinase, SK; a 28.9 15 0.00052 30.4 0.7 16 170-185 2-17 (168)
303 2zr9_A Protein RECA, recombina 28.9 23 0.00078 34.3 2.1 31 155-185 44-78 (349)
304 3foz_A TRNA delta(2)-isopenten 28.8 18 0.00063 34.7 1.3 17 169-185 11-27 (316)
305 3kl4_A SRP54, signal recogniti 28.7 21 0.00071 35.9 1.8 18 169-186 98-115 (433)
306 1g41_A Heat shock protein HSLU 28.7 15 0.00052 37.0 0.8 17 169-185 51-67 (444)
307 2bbw_A Adenylate kinase 4, AK4 28.6 13 0.00046 33.4 0.3 17 169-185 28-44 (246)
308 1ukz_A Uridylate kinase; trans 27.9 16 0.00056 31.4 0.8 17 169-185 16-32 (203)
309 1zd8_A GTP:AMP phosphotransfer 27.9 16 0.00053 32.4 0.6 16 170-185 9-24 (227)
310 1qf9_A UMP/CMP kinase, protein 27.8 16 0.00054 30.9 0.6 16 170-185 8-23 (194)
311 3crv_A XPD/RAD3 related DNA he 27.8 26 0.00088 35.9 2.4 26 158-185 14-39 (551)
312 3k1j_A LON protease, ATP-depen 27.8 18 0.0006 37.7 1.1 28 157-186 51-78 (604)
313 3o8b_A HCV NS3 protease/helica 27.8 21 0.00071 37.9 1.7 17 170-186 234-250 (666)
314 2gno_A DNA polymerase III, gam 27.5 31 0.001 32.6 2.7 30 156-185 6-35 (305)
315 3a4m_A L-seryl-tRNA(SEC) kinas 27.5 18 0.00061 33.1 1.0 17 169-185 5-21 (260)
316 2heh_A KIF2C protein; kinesin, 27.5 28 0.00095 34.4 2.4 23 29-51 46-68 (387)
317 3tif_A Uncharacterized ABC tra 27.3 15 0.0005 33.4 0.4 16 170-185 33-48 (235)
318 3exa_A TRNA delta(2)-isopenten 27.3 19 0.00064 34.8 1.1 16 170-185 5-20 (322)
319 2c95_A Adenylate kinase 1; tra 27.1 18 0.00061 30.7 0.9 16 170-185 11-26 (196)
320 1zu4_A FTSY; GTPase, signal re 27.0 15 0.00051 35.2 0.4 17 170-186 107-123 (320)
321 2vhj_A Ntpase P4, P4; non- hyd 26.9 20 0.00069 34.7 1.2 18 169-186 124-141 (331)
322 2yvu_A Probable adenylyl-sulfa 26.7 20 0.0007 30.4 1.2 17 169-185 14-30 (186)
323 1aky_A Adenylate kinase; ATP:A 26.5 18 0.00061 31.8 0.8 16 170-185 6-21 (220)
324 3lre_A Kinesin-like protein KI 26.5 20 0.00069 34.9 1.2 20 32-51 8-27 (355)
325 3auy_A DNA double-strand break 26.4 22 0.00074 34.5 1.4 16 170-185 27-42 (371)
326 1s96_A Guanylate kinase, GMP k 26.3 16 0.00053 32.9 0.3 16 170-185 18-33 (219)
327 3fb4_A Adenylate kinase; psych 26.2 18 0.00063 31.5 0.8 15 171-185 3-17 (216)
328 2qag_A Septin-2, protein NEDD5 26.2 22 0.00075 34.4 1.4 24 162-185 31-54 (361)
329 1cr0_A DNA primase/helicase; R 26.1 16 0.00055 33.8 0.4 28 159-186 24-53 (296)
330 4a15_A XPD helicase, ATP-depen 26.1 20 0.00067 37.6 1.1 38 142-185 2-39 (620)
331 1xjc_A MOBB protein homolog; s 26.0 16 0.00055 31.7 0.3 16 170-185 6-21 (169)
332 3dm5_A SRP54, signal recogniti 26.0 26 0.00089 35.3 1.9 19 168-186 100-118 (443)
333 1ak2_A Adenylate kinase isoenz 26.0 19 0.00063 32.2 0.8 17 169-185 17-33 (233)
334 1x88_A Kinesin-like protein KI 25.7 21 0.00073 34.8 1.2 22 30-51 4-25 (359)
335 1bg2_A Kinesin; motor protein, 25.7 28 0.00097 33.4 2.1 20 32-51 5-24 (325)
336 2wbe_C Bipolar kinesin KRP-130 25.6 26 0.0009 34.4 1.8 21 30-50 19-39 (373)
337 1j8m_F SRP54, signal recogniti 25.2 27 0.00094 32.9 1.9 17 170-186 100-116 (297)
338 2cdn_A Adenylate kinase; phosp 25.1 21 0.00073 30.7 1.0 18 168-185 20-37 (201)
339 2if2_A Dephospho-COA kinase; a 25.1 19 0.00065 31.1 0.6 16 170-185 3-18 (204)
340 4a14_A Kinesin, kinesin-like p 25.1 24 0.00082 34.2 1.4 21 31-51 8-28 (344)
341 3dl0_A Adenylate kinase; phosp 24.9 20 0.00069 31.3 0.8 15 171-185 3-17 (216)
342 3hr8_A Protein RECA; alpha and 24.7 31 0.0011 33.6 2.1 31 155-185 44-78 (356)
343 2vl7_A XPD; helicase, unknown 24.7 32 0.0011 35.2 2.3 36 144-185 8-43 (540)
344 2jaq_A Deoxyguanosine kinase; 24.6 20 0.0007 30.5 0.8 15 171-185 3-17 (205)
345 4eun_A Thermoresistant glucoki 24.6 25 0.00086 30.4 1.3 17 169-185 30-46 (200)
346 1v8k_A Kinesin-like protein KI 24.2 44 0.0015 33.3 3.2 22 30-51 67-88 (410)
347 2pbr_A DTMP kinase, thymidylat 24.0 21 0.00073 30.1 0.8 14 171-184 3-16 (195)
348 3ney_A 55 kDa erythrocyte memb 23.9 19 0.00063 32.1 0.3 16 170-185 21-36 (197)
349 3qks_A DNA double-strand break 23.9 29 0.00098 30.5 1.6 16 170-185 25-40 (203)
350 1w4r_A Thymidine kinase; type 23.8 29 0.00098 31.0 1.6 17 167-183 19-35 (195)
351 2dyk_A GTP-binding protein; GT 23.8 25 0.00086 28.3 1.1 16 170-185 3-18 (161)
352 3d3q_A TRNA delta(2)-isopenten 23.8 26 0.00088 34.0 1.4 15 170-184 9-23 (340)
353 3u4q_A ATP-dependent helicase/ 23.7 19 0.00063 41.0 0.4 19 168-186 23-41 (1232)
354 2ce2_X GTPase HRAS; signaling 23.7 24 0.00082 28.3 1.0 16 170-185 5-20 (166)
355 3aez_A Pantothenate kinase; tr 23.7 19 0.00064 34.3 0.3 17 169-185 91-107 (312)
356 2zfi_A Kinesin-like protein KI 23.5 28 0.00097 34.0 1.6 19 33-51 3-21 (366)
357 3bfn_A Kinesin-like protein KI 23.4 36 0.0012 33.6 2.3 22 30-51 17-38 (388)
358 3qf7_A RAD50; ABC-ATPase, ATPa 23.4 29 0.00098 33.6 1.6 15 171-185 26-40 (365)
359 2ged_A SR-beta, signal recogni 23.1 26 0.00089 29.5 1.1 19 167-185 47-65 (193)
360 2whx_A Serine protease/ntpase/ 22.9 26 0.00088 36.7 1.3 24 160-185 180-203 (618)
361 2v9p_A Replication protein E1; 22.9 20 0.00068 34.2 0.4 17 169-185 127-143 (305)
362 1goj_A Kinesin, kinesin heavy 22.8 31 0.001 33.6 1.7 19 33-51 5-23 (355)
363 3tqc_A Pantothenate kinase; bi 22.7 35 0.0012 32.6 2.1 16 170-185 94-109 (321)
364 1svm_A Large T antigen; AAA+ f 22.7 36 0.0012 33.3 2.2 17 169-185 170-186 (377)
365 2v3c_C SRP54, signal recogniti 22.5 22 0.00075 35.5 0.6 17 170-186 101-117 (432)
366 3bh0_A DNAB-like replicative h 22.4 45 0.0015 31.4 2.8 31 155-185 53-85 (315)
367 1zuh_A Shikimate kinase; alpha 22.2 30 0.001 28.7 1.4 16 169-184 8-23 (168)
368 1u94_A RECA protein, recombina 22.1 37 0.0013 32.9 2.1 32 155-186 46-81 (356)
369 2pcj_A ABC transporter, lipopr 22.0 20 0.00069 32.1 0.2 16 170-185 32-47 (224)
370 3nwn_A Kinesin-like protein KI 22.0 42 0.0014 32.7 2.5 20 32-51 22-41 (359)
371 3dmq_A RNA polymerase-associat 21.9 27 0.00092 38.6 1.2 28 159-186 161-188 (968)
372 1zj6_A ADP-ribosylation factor 21.9 53 0.0018 27.4 2.9 23 163-185 11-33 (187)
373 1sq5_A Pantothenate kinase; P- 21.9 35 0.0012 32.0 1.9 17 169-185 81-97 (308)
374 1e4v_A Adenylate kinase; trans 21.7 24 0.00083 30.8 0.6 15 171-185 3-17 (214)
375 3f9v_A Minichromosome maintena 21.7 23 0.0008 36.9 0.6 17 170-186 329-345 (595)
376 1z2a_A RAS-related protein RAB 21.6 29 0.001 28.0 1.1 18 168-185 5-22 (168)
377 3umf_A Adenylate kinase; rossm 21.6 29 0.00099 31.2 1.2 14 170-183 31-44 (217)
378 2onk_A Molybdate/tungstate ABC 21.6 22 0.00075 32.4 0.3 16 170-185 26-41 (240)
379 1ksh_A ARF-like protein 2; sma 21.4 37 0.0013 28.3 1.7 20 166-185 16-35 (186)
380 3sr0_A Adenylate kinase; phosp 21.3 29 0.001 30.8 1.1 13 171-183 3-15 (206)
381 2cbz_A Multidrug resistance-as 21.3 22 0.00077 32.2 0.4 16 170-185 33-48 (237)
382 1zak_A Adenylate kinase; ATP:A 21.3 28 0.00097 30.5 1.0 16 170-185 7-22 (222)
383 3be4_A Adenylate kinase; malar 21.2 25 0.00085 30.9 0.6 16 170-185 7-22 (217)
384 1ltq_A Polynucleotide kinase; 21.2 28 0.00095 32.1 1.0 17 169-185 3-19 (301)
385 1ji0_A ABC transporter; ATP bi 21.2 23 0.00077 32.2 0.4 16 170-185 34-49 (240)
386 2rep_A Kinesin-like protein KI 21.2 42 0.0014 32.9 2.3 21 31-51 19-39 (376)
387 2plr_A DTMP kinase, probable t 21.2 30 0.001 29.6 1.1 17 169-185 5-21 (213)
388 1np6_A Molybdopterin-guanine d 21.1 23 0.00077 30.7 0.3 16 170-185 8-23 (174)
389 1g6h_A High-affinity branched- 21.1 23 0.00078 32.5 0.4 16 170-185 35-50 (257)
390 1cke_A CK, MSSA, protein (cyti 21.1 32 0.0011 30.0 1.4 16 170-185 7-22 (227)
391 3gfo_A Cobalt import ATP-bindi 21.1 23 0.00078 33.1 0.3 15 171-185 37-51 (275)
392 1nlf_A Regulatory protein REPA 21.1 31 0.001 31.6 1.2 17 169-185 31-47 (279)
393 1ex7_A Guanylate kinase; subst 21.0 30 0.001 30.3 1.1 47 171-218 4-71 (186)
394 3io5_A Recombination and repai 20.9 41 0.0014 32.6 2.1 31 155-185 9-45 (333)
395 1xp8_A RECA protein, recombina 20.9 36 0.0012 33.1 1.8 31 155-185 57-91 (366)
396 3lda_A DNA repair protein RAD5 20.9 40 0.0014 33.3 2.1 32 155-186 162-196 (400)
397 2yz2_A Putative ABC transporte 20.8 23 0.0008 32.7 0.4 16 170-185 35-50 (266)
398 3fvq_A Fe(3+) IONS import ATP- 20.7 22 0.00077 34.7 0.2 16 170-185 32-47 (359)
399 2r6a_A DNAB helicase, replicat 20.6 49 0.0017 32.9 2.8 31 156-186 189-221 (454)
400 1sgw_A Putative ABC transporte 20.6 22 0.00075 31.8 0.1 15 171-185 38-52 (214)
401 2yyz_A Sugar ABC transporter, 20.5 24 0.00081 34.4 0.4 16 170-185 31-46 (359)
402 3rlf_A Maltose/maltodextrin im 20.5 24 0.00081 34.8 0.3 16 170-185 31-46 (381)
403 1jjv_A Dephospho-COA kinase; P 20.5 34 0.0012 29.5 1.4 16 170-185 4-19 (206)
404 3cf2_A TER ATPase, transitiona 20.4 23 0.00077 38.5 0.2 17 169-185 512-528 (806)
405 1b0u_A Histidine permease; ABC 20.3 24 0.00083 32.5 0.3 16 170-185 34-49 (262)
406 2ghi_A Transport protein; mult 20.3 24 0.00083 32.4 0.4 16 170-185 48-63 (260)
407 1u8z_A RAS-related protein RAL 20.2 33 0.0011 27.6 1.1 16 170-185 6-21 (168)
408 2ff7_A Alpha-hemolysin translo 20.2 24 0.00084 32.2 0.4 16 170-185 37-52 (247)
409 1ky3_A GTP-binding protein YPT 20.1 33 0.0011 28.2 1.1 18 168-185 8-25 (182)
410 2wv9_A Flavivirin protease NS2 20.1 32 0.0011 36.4 1.3 19 165-185 240-258 (673)
No 1
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=100.00 E-value=4.4e-78 Score=601.64 Aligned_cols=283 Identities=35% Similarity=0.569 Sum_probs=230.6
Q ss_pred CCCeEEEEEeCCCCChhhccCCceEEEEeCC-cEEEeCCCCCCCcceeeccccchhhccccCCCceeEeeceEeCCCCCc
Q psy4062 70 QSHMKVYIRVRPQSQKEEDGCHREIVKILNR-DTIIFDPKQDDSEFFFHGVKQSLRDINKKKSKEMEFLFDRVYGPSESN 148 (409)
Q Consensus 70 ~~~ikV~vRvRP~~~~E~~~~~~~~v~~~~~-~~ii~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~asQ 148 (409)
.++|+|+||+||+++.|...+...++.+.++ ..+++.++..... ........+.|.||+||+++++|
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~~~------------~~~~~~~~~~f~FD~Vf~~~~~Q 70 (350)
T 2vvg_A 3 SDNIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKS------------ATQAKKVPRTFTFDAVYDQTSCN 70 (350)
T ss_dssp -CBCEEEEEECCCCHHHHHTTCCBCEEEEGGGTEEEECC--------------------------EEEECSEEECTTCCH
T ss_pred CCCeEEEEEeCCCChhhhccCCceEEEEcCCCCEEEEeecccccc------------ccccCCCceEeeCCEEECCCcch
Confidence 5689999999999999998888889988753 4555554432111 00112356789999999999999
Q ss_pred hhhhccchHHHHHHHhcCcceEEEeeccCCCCceeeecCCCCCCchhhhhhhhhhHHHhhhhce---------eEEEEEe
Q psy4062 149 QDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGNENHKGIMYLTMGIRNRVSALTRQM---------CTMRMYK 219 (409)
Q Consensus 149 ~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G~~~~~GIi~~~~~~~~lf~~~~~~~---------s~~eiy~ 219 (409)
++||+.+++|+|+++|+|||+||||||||||||||||+|+++++|||||++.+ +|+.+.... ||+|||+
T Consensus 71 ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~--lF~~i~~~~~~~~~~v~vS~~EIYn 148 (350)
T 2vvg_A 71 YGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPGAIPNSFKH--LFDAINSSSSNQNFLVIGSYLELYN 148 (350)
T ss_dssp HHHHHHTTHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBCSSSBCHHHHHHHH--HHHHHHTCCTTEEEEEEEEEEEEET
T ss_pred hHHHHHHHHHHHHHHhCCCceeEEeecCCCCCCCEEeecCCccCchHHHHHHH--HHHHHHhhccCCcEEEEEEEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999 999987422 8999999
Q ss_pred ceeeEe---------------------------------------------------ecCcccceeeEEEEEEeeccc--
Q psy4062 220 TCLILR---------------------------------------------------RKPSICEKMQLMVYVKMQDKA-- 246 (409)
Q Consensus 220 ~~~~~~---------------------------------------------------~~~ssrsh~i~~i~v~~~~~~-- 246 (409)
+.++|+ +..|||||++|+|+++..+..
T Consensus 149 E~i~DLL~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~ 228 (350)
T 2vvg_A 149 EEIRDLIKNNTKLPLKEDKTRGIYVDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIEN 228 (350)
T ss_dssp TEEEETTTTEEEECEEEETTTEEEETTCCCEEESSHHHHHHHHHHHHHHC----------CTTCEEEEEEEEEEEEC---
T ss_pred CEEEEcccCCcCceeeEcCCCCEEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcceEEEEEEEEEeeccCC
Confidence 998886 234899999999999876643
Q ss_pred cceeEEeEEEEeecCCcccccccCCccchhhhhcccchhHHHHHHHHHHHhcCCCCcccCCchhhHhhhhccCCCccEEE
Q psy4062 247 TKQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLADGCRHVPYRDSKLTRILKDSLGGNCKTVM 326 (409)
Q Consensus 247 ~~~~~~skL~~VDLAGSEr~~~~~~~~~r~~E~~~IN~SL~aL~~vI~aL~~~~~~iPyRdSkLT~LLk~sLgGn~~t~~ 326 (409)
......++|+|||||||||..++++.|++++|+.+||+||++||+||.+|++++.||||||||||+||||+|||||+|+|
T Consensus 229 ~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~m 308 (350)
T 2vvg_A 229 KEVIRVGKLNLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGATHIPYRDSKLTRLLQDSLGGNSKTLM 308 (350)
T ss_dssp -CEEEEEEEEEEECCCCCC---------------CTTHHHHHHHHHHHHHHHTCSSCCGGGCHHHHHTTTTTTSSSEEEE
T ss_pred CccEEEEEEEEEeCCCCCccccccccHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCCCccccHHHHHHHHhcCCCccEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHHHhcCcccceeeccCCch
Q psy4062 327 IANIAPTALSYEDSYNTLKYATRAKKIKAKVSRTFKSGAH 366 (409)
Q Consensus 327 I~~isP~~~~~~eTl~TL~fa~rak~Ik~~~~~n~~~~~~ 366 (409)
|+||||+..+++||++||+||+|||+|+|+|++|....+.
T Consensus 309 I~~isP~~~~~~ETl~TL~fA~rak~i~n~~~~n~~~~~~ 348 (350)
T 2vvg_A 309 CANISPASTNYDETMSTLRYADRAKQIKNKPRINEDPKDA 348 (350)
T ss_dssp EEEECCBGGGHHHHHHHHHHHHHHTTCBCCCCCCBSCTTC
T ss_pred EEEeCCccccHHHHHHHHHHHHHHhhccccceecCCchhc
Confidence 9999999999999999999999999999999999876653
No 2
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=3.9e-78 Score=603.80 Aligned_cols=281 Identities=47% Similarity=0.831 Sum_probs=216.8
Q ss_pred CCCeEEEEEeCCCCChhhccCCceEEEEeCCcEEEeCCCCCCCcceeeccccchhhccccCCCceeEeeceEeCCCCCch
Q psy4062 70 QSHMKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKSKEMEFLFDRVYGPSESNQ 149 (409)
Q Consensus 70 ~~~ikV~vRvRP~~~~E~~~~~~~~v~~~~~~~ii~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~asQ~ 149 (409)
.++|||+|||||++++|...+...+|.+.++++++++|......+ +.+.+....+..++..++..|.||+||+++++|+
T Consensus 9 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~F~FD~vf~~~~~Q~ 87 (355)
T 3lre_A 9 CHHMKVVVRVRPENTKEKAAGFHKVVHVVDKHILVFDPKQEEVSF-FHGKKTTNQNVIKKQNKDLKFVFDAVFDETSTQS 87 (355)
T ss_dssp ---CEEEEEECCCCHHHHHTTCCBSEEECSSSEEEEC-------------------------CCEEEECSEEECTTCCHH
T ss_pred cCCCEEEEEeCcCChHHHhcCCceEEEecCCceEEecCCCCccee-ecccccccccchhccCCCceEEeceEECCCCChH
Confidence 679999999999999999999999999999999999988765432 1111212222223345677899999999999999
Q ss_pred hhhccchHHHHHHHhcCcceEEEeeccCCCCceeeecCCCCCCchhhhhhhhhhHHHhhhhce---------eEEEEEec
Q psy4062 150 DVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGNENHKGIMYLTMGIRNRVSALTRQM---------CTMRMYKT 220 (409)
Q Consensus 150 eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G~~~~~GIi~~~~~~~~lf~~~~~~~---------s~~eiy~~ 220 (409)
+||+.++.|+|+++|+|||+||||||||||||||||+|+++++||+|+++.+ +|..+.... ||+|||++
T Consensus 88 ~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~--lf~~i~~~~~~~~~~v~vS~~EIYnE 165 (355)
T 3lre_A 88 EVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSADEPGVMYLTMLH--LYKCMDEIKEEKICSTAVSYLEVYNE 165 (355)
T ss_dssp HHHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHHTBCSSSBCHHHHHHHH--HHHHHHHTTTTEEEEEEEEEEEEETT
T ss_pred HHHHHHHHHHHHHHhCCCceEEEEeCCCCCCceeeeccCCCCCCeeehhhhH--HHHhhhhhccCceEEEEEEEEEEECC
Confidence 9999999999999999999999999999999999999999999999999999 998886532 99999999
Q ss_pred eeeEe---------------------------------------------------ecCcccceeeEEEEEEeeccc---
Q psy4062 221 CLILR---------------------------------------------------RKPSICEKMQLMVYVKMQDKA--- 246 (409)
Q Consensus 221 ~~~~~---------------------------------------------------~~~ssrsh~i~~i~v~~~~~~--- 246 (409)
.++|+ +..|||||++|+|++.+.+..
T Consensus 166 ~i~DLL~~~~~l~ire~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~ 245 (355)
T 3lre_A 166 QIRDLLVNSGPLAVREDTQKGVVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLRQQDKTASI 245 (355)
T ss_dssp EEEESSSCCCCBEEEECTTSCEEEETCCCBCCCSHHHHHHHHHHHHHTSCBC-----CBCTTCEEEEEEEEEEEETTSCT
T ss_pred EEEECcCCCCCceeEEcCCCCEEeeeeeEEecCCHHHHHHHHHHHHhcCCcccccCcCCCCCCcEEEEEEEEEecCCCCC
Confidence 98887 234899999999999987654
Q ss_pred cceeEEeEEEEeecCCcccccccCCccchhhhhcccchhHHHHHHHHHHHhcCC---CCcccCCchhhHhhhhccCCCcc
Q psy4062 247 TKQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLADGC---RHVPYRDSKLTRILKDSLGGNCK 323 (409)
Q Consensus 247 ~~~~~~skL~~VDLAGSEr~~~~~~~~~r~~E~~~IN~SL~aL~~vI~aL~~~~---~~iPyRdSkLT~LLk~sLgGn~~ 323 (409)
......++|+|||||||||..++++.|.|++|+.+||+||++||+||.||++++ .|||||||||||||||+|||||+
T Consensus 246 ~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lL~dsLgGnsk 325 (355)
T 3lre_A 246 NQNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALADSKRKNQHIPYRNSKLTRLLKDSLGGNCQ 325 (355)
T ss_dssp TCCCCCEEEEEEECCCCCC-----------------CHHHHHHHHHHHHHC--------CCGGGSHHHHHTTTTSSTTSE
T ss_pred CCCEEEEEEEEEECCCCCcCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCCcccCHHHHHHHHhcCCCce
Confidence 345678999999999999999999999999999999999999999999999864 59999999999999999999999
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHHHhcC
Q psy4062 324 TVMIANIAPTALSYEDSYNTLKYATRAKKI 353 (409)
Q Consensus 324 t~~I~~isP~~~~~~eTl~TL~fa~rak~I 353 (409)
|+||+||||+..+++||++||+||+|||+|
T Consensus 326 t~mIa~isP~~~~~~ETl~TL~fA~rak~I 355 (355)
T 3lre_A 326 TIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355 (355)
T ss_dssp EEEEEEECCBGGGHHHHHHHHHHHHHTC--
T ss_pred EEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999987
No 3
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=100.00 E-value=3.1e-77 Score=596.94 Aligned_cols=275 Identities=35% Similarity=0.527 Sum_probs=251.2
Q ss_pred CCCCeEEEEEeCCCCChhhccCCceEEEEeCCcEEEeCCCCCCCcceeeccccchhhccccCCCceeEeeceEeCCCCCc
Q psy4062 69 EQSHMKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKSKEMEFLFDRVYGPSESN 148 (409)
Q Consensus 69 ~~~~ikV~vRvRP~~~~E~~~~~~~~v~~~~~~~ii~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~asQ 148 (409)
+.++|+|+||+||+++.|...+...+|.+.++.++.++.. ...+.|.||+||+++++|
T Consensus 4 ~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~----------------------~~~~~f~FD~Vf~~~~~Q 61 (355)
T 1goj_A 4 SANSIKVVARFRPQNRVEIESGGQPIVTFQGPDTCTVDSK----------------------EAQGSFTFDRVFDMSCKQ 61 (355)
T ss_dssp SSCBCEEEEEECCCCHHHHTTTCCBCEEECSTTEEEECST----------------------TCCEEEECSEEECTTCCH
T ss_pred CCCCeEEEEECCCCChHHhhcCCceEEEEcCCCeEEEccC----------------------CCccEEeeCeEECCCCcc
Confidence 4679999999999999999888888999888777655422 234579999999999999
Q ss_pred hhhhccchHHHHHHHhcCcceEEEeeccCCCCceeeecCC----CCCCchhhhhhhhhhHHHhhhhce---------eEE
Q psy4062 149 QDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGN----ENHKGIMYLTMGIRNRVSALTRQM---------CTM 215 (409)
Q Consensus 149 ~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G~----~~~~GIi~~~~~~~~lf~~~~~~~---------s~~ 215 (409)
++||+.+++|+|+++|+|||+||||||||||||||||+|+ ++++|||||++.+ +|..+.... ||+
T Consensus 62 ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~Giipr~~~~--lF~~i~~~~~~~~~~v~vS~~ 139 (355)
T 1goj_A 62 SDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQ--IFTSILSSAANIEYTVRVSYM 139 (355)
T ss_dssp HHHHHHHTHHHHHHHTTTCCEEEEEECSTTSSHHHHHTBSCTTSTTTBCHHHHHHHH--HHHHHHTSCTTEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCcceEEEECCCCCCcceEeecCCCCCcccCCchHHHHHH--HHHHHHhcccCceEEEEEEEE
Confidence 9999999999999999999999999999999999999996 4668999999999 999886432 999
Q ss_pred EEEeceeeEe----------------------------------------------------ecCcccceeeEEEEEEee
Q psy4062 216 RMYKTCLILR----------------------------------------------------RKPSICEKMQLMVYVKMQ 243 (409)
Q Consensus 216 eiy~~~~~~~----------------------------------------------------~~~ssrsh~i~~i~v~~~ 243 (409)
|||++.++|+ +..|||||++|+|++.+.
T Consensus 140 EIYnE~i~DLL~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~ 219 (355)
T 1goj_A 140 EIYMERIRDLLAPQNDNLPVHEEKNRGVYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQK 219 (355)
T ss_dssp EEETTEEEETTSTTCCSCCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEEEEEEEEE
T ss_pred EEECCEEEEcccCccCCceeEEcCCCCEeecCCEEEeCCCHHHHHHHHHHHHhhcCcccccCCCCCCCceEEEEEEEEEe
Confidence 9999998886 235899999999999998
Q ss_pred ccccceeEEeEEEEeecCCcccccccCCccchhhhhcccchhHHHHHHHHHHHhcCC-CCcccCCchhhHhhhhccCCCc
Q psy4062 244 DKATKQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLADGC-RHVPYRDSKLTRILKDSLGGNC 322 (409)
Q Consensus 244 ~~~~~~~~~skL~~VDLAGSEr~~~~~~~~~r~~E~~~IN~SL~aL~~vI~aL~~~~-~~iPyRdSkLT~LLk~sLgGn~ 322 (409)
+........++|+|||||||||..++++.|++++|+.+||+||++|++||.+|++++ .|||||||||||||||+|||||
T Consensus 220 ~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGns 299 (355)
T 1goj_A 220 NVETGSAKSGQLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQESLGGNS 299 (355)
T ss_dssp ETTTTEEEEEEEEEEECCCCSCCTTSSSCCCCTTTTGGGTSHHHHHHHHHHHHHHCSCSCCCGGGCHHHHHTGGGTTSSC
T ss_pred ccCCCceeeeEEEEEECCCCCcccccccchhhHHHHHhhhhHHHHHHHHHHHHhcCCCCCCCCccCHHHHHHHHHhCCCC
Confidence 877778889999999999999999999999999999999999999999999999874 8999999999999999999999
Q ss_pred cEEEEEEeCCCCCCHHHHHHHHHHHHHHhcCcccceeeccCCchh
Q psy4062 323 KTVMIANIAPTALSYEDSYNTLKYATRAKKIKAKVSRTFKSGAHF 367 (409)
Q Consensus 323 ~t~~I~~isP~~~~~~eTl~TL~fa~rak~Ik~~~~~n~~~~~~~ 367 (409)
+|+||+||||+..+++||++||+||+|||+|+|+|++|....+..
T Consensus 300 ~t~mI~~isP~~~~~~ETl~TL~fA~rak~I~n~~~vn~~~~~~~ 344 (355)
T 1goj_A 300 RTTLIINCSPSSYNDAETLSTLRFGMRAKSIKNKAKVNAELSPAE 344 (355)
T ss_dssp EEEEEEEECCBGGGHHHHHHHHHHHHHHHTCBCCCCCCSSSSCSS
T ss_pred cEEEEEEECcccccHHHHHHHHHHHHHHhhccCCceeCCCCCHHH
Confidence 999999999999999999999999999999999999998766543
No 4
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=100.00 E-value=4.7e-77 Score=597.88 Aligned_cols=283 Identities=34% Similarity=0.570 Sum_probs=230.8
Q ss_pred CCCCCeEEEEEeCCCCChhhccCCceEEEEeCC-cEEEe-CCCCCCCcceeeccccchhhccccCCCceeEeeceEeCCC
Q psy4062 68 GEQSHMKVYIRVRPQSQKEEDGCHREIVKILNR-DTIIF-DPKQDDSEFFFHGVKQSLRDINKKKSKEMEFLFDRVYGPS 145 (409)
Q Consensus 68 ~~~~~ikV~vRvRP~~~~E~~~~~~~~v~~~~~-~~ii~-dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~ 145 (409)
...++|+|+||+||+++.|...+...++.+... ..+.+ +|.... ....+.|.||+||+++
T Consensus 18 ~~~~~irV~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~~------------------~~~~~~F~FD~Vf~~~ 79 (372)
T 3b6u_A 18 GSSESVRVVVRCRPMNGKEKAASYDKVVDVDVKLGQVSVKNPKGTA------------------HEMPKTFTFDAVYDWN 79 (372)
T ss_dssp ---CBCEEEEEECCCCHHHHHTTCCBCEEEETTTTEEEECCTTCTT------------------TCCCEEEECSEEECTT
T ss_pred CCCCCeEEEEEcCCCChhhhccCCceEEEEeCCCCEEEEECCCCCC------------------CCCceEEEcCeEeCCc
Confidence 457899999999999999988888888888653 34433 333211 2345689999999999
Q ss_pred CCchhhhccchHHHHHHHhcCcceEEEeeccCCCCceeeecCCC---CCCchhhhhhhhhhHHHhhhhce--------eE
Q psy4062 146 ESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGNE---NHKGIMYLTMGIRNRVSALTRQM--------CT 214 (409)
Q Consensus 146 asQ~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G~~---~~~GIi~~~~~~~~lf~~~~~~~--------s~ 214 (409)
++|++||+.+++|+|+++|+|||+||||||||||||||||+|.. +++|||||++.+ +|..+.... ||
T Consensus 80 ~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~Giipr~~~~--lF~~i~~~~~~~~~v~vS~ 157 (372)
T 3b6u_A 80 AKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIPNSFDH--IFTHISRSQNQQYLVRASY 157 (372)
T ss_dssp CCHHHHHHHTHHHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCTTSGGGBCHHHHHHHH--HHHHHHTCSSCEEEEEEEE
T ss_pred CchHHHHHHHHHHHHHHHhCCCeeeEEeecCCCCCCCEeEecCCCCcccCCcHHHHHHH--HHHHhhhccCCceEEEEEE
Confidence 99999999999999999999999999999999999999999975 456999999999 999987532 99
Q ss_pred EEEEeceeeEe-----------------------------------------------------ecCcccceeeEEEEEE
Q psy4062 215 MRMYKTCLILR-----------------------------------------------------RKPSICEKMQLMVYVK 241 (409)
Q Consensus 215 ~eiy~~~~~~~-----------------------------------------------------~~~ssrsh~i~~i~v~ 241 (409)
+|||++.++|+ +..|||||++|+|+++
T Consensus 158 ~EIYnE~i~DLL~~~~~~~l~i~e~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~ 237 (372)
T 3b6u_A 158 LEIYQEEIRDLLSKDQTKRLELKERPDTGVYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIE 237 (372)
T ss_dssp EEEETTEEEETTSSCTTCCBCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTTTCSSHHHHHHTSEEEEEEEEE
T ss_pred EEEeCCEEEECCCCCCCCCceEEECCCCcEecCCCEEEEecCHHHHHHHHHHHHHhcCcccccCCCCCCcceEEEEEEEE
Confidence 99999998887 1237899999999998
Q ss_pred eeccc---cceeEEeEEEEeecCCcccccccCCccchhhhhcccchhHHHHHHHHHHHhcCC-CCcccCCchhhHhhhhc
Q psy4062 242 MQDKA---TKQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLADGC-RHVPYRDSKLTRILKDS 317 (409)
Q Consensus 242 ~~~~~---~~~~~~skL~~VDLAGSEr~~~~~~~~~r~~E~~~IN~SL~aL~~vI~aL~~~~-~~iPyRdSkLT~LLk~s 317 (409)
..+.. ......++|+|||||||||..++++.|+|++|+.+||+||++|++||.+|++++ .||||||||||+||||+
T Consensus 238 ~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqds 317 (372)
T 3b6u_A 238 CSEVGLDGENHIRVGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDS 317 (372)
T ss_dssp EEC-----CCCEEEEEEEEEECCCCCE----------EEEGGGCCHHHHHHHHHHHHHHCC---CCCGGGSHHHHHTTTT
T ss_pred EeecCCCCCcceEEEEEEEEECCCCccccccCcchhhhhhHhhhhhhHHHHHHHHHHHhcCCCCCCcccccHHHHHHHHh
Confidence 86542 345778999999999999999999999999999999999999999999999876 69999999999999999
Q ss_pred cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHHhcCcccceeeccCCchhhhh
Q psy4062 318 LGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKIKAKVSRTFKSGAHFKLE 370 (409)
Q Consensus 318 LgGn~~t~~I~~isP~~~~~~eTl~TL~fa~rak~Ik~~~~~n~~~~~~~~~~ 370 (409)
|||||+|+||+||||+..+++||++||+||+|||+|+|+|++|....+....+
T Consensus 318 LgGnskt~mIa~vsP~~~~~~ETlsTLrfA~rak~I~n~~~~n~~~~~~~~~~ 370 (372)
T 3b6u_A 318 LGGNAKTVMVANVGPASYNVEETLTTLRYANRAKNIKNKPRVNEDPKDALLRE 370 (372)
T ss_dssp TTSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHTTCBCCCCCCC---------
T ss_pred cCCCccEEEEEEeCCcccCHHHHHHHHHHHHHHhhccccceecCChHHHHHHh
Confidence 99999999999999999999999999999999999999999999877665444
No 5
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.1e-77 Score=602.38 Aligned_cols=279 Identities=33% Similarity=0.540 Sum_probs=207.5
Q ss_pred CCCCCeEEEEEeCCCCChhhccCCceEEEEeCCcEEEeCCCCCCCcceeeccccchhhccccCCCceeEeeceEeCCCCC
Q psy4062 68 GEQSHMKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKSKEMEFLFDRVYGPSES 147 (409)
Q Consensus 68 ~~~~~ikV~vRvRP~~~~E~~~~~~~~v~~~~~~~ii~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~as 147 (409)
+..++|+|+|||||+++.|...+...|+...++..+.+.... .......|.||+||+++++
T Consensus 18 ~~~~~irV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~i~~~~-------------------~~~~~~~f~FD~Vf~~~~t 78 (388)
T 3bfn_A 18 GPPARVRVAVRLRPFVDGTAGASDPPCVRGMDSCSLEIANWR-------------------NHQETLKYQFDAFYGERST 78 (388)
T ss_dssp SCCCCCEEEEEECCCC------------------------------------------------CEEEEECSEEECTTCC
T ss_pred CCCCCEEEEEECCCCChhhhccCCCceEEecCCCeEEEecCC-------------------CCCCeeEEEcceEecCCCC
Confidence 457899999999999999977766677776665544332111 0124568999999999999
Q ss_pred chhhhccchHHHHHHHhcCcceEEEeeccCCCCceeeecCCCCCCchhhhhhhhhhHHHhhhhc------------eeEE
Q psy4062 148 NQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGNENHKGIMYLTMGIRNRVSALTRQ------------MCTM 215 (409)
Q Consensus 148 Q~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G~~~~~GIi~~~~~~~~lf~~~~~~------------~s~~ 215 (409)
|++||+.+++|+|+++|+|||+||||||||||||||||+|+++++|||||++.+ +|..+... .||+
T Consensus 79 Q~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTM~G~~~~~Giipra~~~--lF~~i~~~~~~~~~~~~~V~vS~l 156 (388)
T 3bfn_A 79 QQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLGSPEQPGVIPRALMD--LLQLTREEGAEGRPWALSVTMSYL 156 (388)
T ss_dssp HHHHHHHHTGGGHHHHTTTCCEEEEEESCTTSSHHHHHTBCSSSBCHHHHHHHH--HHHHHHHHTSTTCSEEEEEEEEEE
T ss_pred HhHHHHHHHHHHHHHhhcCceeeEeeecCCCCCCCeEeecCccccchhHHHHHH--HHHHHHHhhccCCCceEEEEEEEE
Confidence 999999999999999999999999999999999999999999999999999999 99888642 2899
Q ss_pred EEEeceeeEe----------------------------------------------------ecCcccceeeEEEEEEee
Q psy4062 216 RMYKTCLILR----------------------------------------------------RKPSICEKMQLMVYVKMQ 243 (409)
Q Consensus 216 eiy~~~~~~~----------------------------------------------------~~~ssrsh~i~~i~v~~~ 243 (409)
|||++.++|+ +..|||||++|+|.+.+.
T Consensus 157 EIYnE~i~DLL~~~~~~l~ired~~~~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~ 236 (388)
T 3bfn_A 157 EIYQEKVLDLLDPASGDLVIREDCRGNILIPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQR 236 (388)
T ss_dssp EEETTEEEESSSCSSCBCCCEECTTSCEECTTCCCEECCSHHHHHHHHHHHTC-----------CGGGSEEEEEEEEEEE
T ss_pred EEECCeeeehhccCCCCceEEEcCCCCEEeccceEEEeCCHHHHHHHHHHHhhccccccccCCCCCCCCeEEEEEEEEEe
Confidence 9999998887 234899999999999887
Q ss_pred ccc-cceeEEeEEEEeecCCcccccccCCccchhhhhcccchhHHHHHHHHHHHhcCCCCcccCCchhhHhhhhccCCCc
Q psy4062 244 DKA-TKQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLADGCRHVPYRDSKLTRILKDSLGGNC 322 (409)
Q Consensus 244 ~~~-~~~~~~skL~~VDLAGSEr~~~~~~~~~r~~E~~~IN~SL~aL~~vI~aL~~~~~~iPyRdSkLT~LLk~sLgGn~ 322 (409)
+.. ......++|+|||||||||..++++.|.|++|+.+||+||++||+||.+|+++..||||||||||+||||+|||||
T Consensus 237 ~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~hVPYRdSkLTrlLqdsLgGns 316 (388)
T 3bfn_A 237 ERLAPFRQREGKLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGLPRVPYRDSKLTRLLQDSLGGSA 316 (388)
T ss_dssp ESSTTCCEEEEEEEEEECCCTTC--------------CCCCHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTTTSSSTTC
T ss_pred ccCCCCceeEEEEEEEECCCCcccccccCccchhHHHhHhhhhHHHHHHHHHHHhcCCCCCcCcccHHHHHHHHhhCCCc
Confidence 654 2345789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEeCCCCCCHHHHHHHHHHHHHHhcCcccceeeccCCchh
Q psy4062 323 KTVMIANIAPTALSYEDSYNTLKYATRAKKIKAKVSRTFKSGAHF 367 (409)
Q Consensus 323 ~t~~I~~isP~~~~~~eTl~TL~fa~rak~Ik~~~~~n~~~~~~~ 367 (409)
+|+||+||||+..+++||++||+||+|||+|+|+|.+|....+..
T Consensus 317 kT~mIa~iSP~~~~~~ETlsTLrfA~rak~I~n~p~~n~~~~~~~ 361 (388)
T 3bfn_A 317 HSILIANIAPERRFYLDTVSALNFAARSKEVINRPFTNESLQPHA 361 (388)
T ss_dssp EEEEEEEECCSGGGHHHHHHHHHHHCSEEEEC-------------
T ss_pred cEEEEEEECCccccHHHHHHHHHHHHHHhhCcCcCcccCCCCHHH
Confidence 999999999999999999999999999999999999998766654
No 6
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=100.00 E-value=6e-77 Score=598.44 Aligned_cols=274 Identities=37% Similarity=0.603 Sum_probs=228.6
Q ss_pred CCCCeEEEEEeCCCCChhhccCCceEEEEeCCcEEEeCCCCCCCcceeeccccchhhccccCCCceeEeeceEeCCCCCc
Q psy4062 69 EQSHMKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKSKEMEFLFDRVYGPSESN 148 (409)
Q Consensus 69 ~~~~ikV~vRvRP~~~~E~~~~~~~~v~~~~~~~ii~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~asQ 148 (409)
..++|+|||||||+++.|...+...++.+.++..+++.+... ....+.|.||+||+++++|
T Consensus 21 ~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~-------------------~~~~~~F~FD~vf~~~~~Q 81 (373)
T 2wbe_C 21 SNQNIQVYVRVRPLNSRERCIRSAEVVDVVGPREVVTRHTLD-------------------SKLTKKFTFDRSFGPESKQ 81 (373)
T ss_dssp CCEECEEEEEECCCCHHHHHHTCCBCEEEETTTEEEESSSSS-------------------STTCEEEECSEEECTTCCH
T ss_pred CCCCeEEEEEcCCCChhhhccCCCceEEEcCCCeEEEecCCC-------------------CCCceEEeccEEeccccch
Confidence 467999999999999999887888899998888777654332 1245689999999999999
Q ss_pred hhhhccchHHHHHHHhcCcceEEEeeccCCCCceeeecCCCC-----------CCchhhhhhhhhhHHHhhhhce-----
Q psy4062 149 QDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGNEN-----------HKGIMYLTMGIRNRVSALTRQM----- 212 (409)
Q Consensus 149 ~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G~~~-----------~~GIi~~~~~~~~lf~~~~~~~----- 212 (409)
++||+.+++|+|+++|+|||+||||||||||||||||+|++. ++|||||++.+ +|+.+....
T Consensus 82 ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~~~~~~Giipr~~~~--lF~~i~~~~~~~~v 159 (373)
T 2wbe_C 82 CDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIPRALSH--LFDELRMMEVEYTM 159 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHTBSCSCCSSSCSSCTTTBCHHHHHHHH--HHHHHHHCCSCEEE
T ss_pred hHHHHHHHHHHHHHHhCCceEEEEeecCCCCCcceecccCccccccccccccCCCcChHHHHHH--HHHHHHhcCceEEE
Confidence 999999999999999999999999999999999999999754 67999999999 999886533
Q ss_pred --eEEEEEeceeeEe-------------------------------------------------------ecCcccceee
Q psy4062 213 --CTMRMYKTCLILR-------------------------------------------------------RKPSICEKMQ 235 (409)
Q Consensus 213 --s~~eiy~~~~~~~-------------------------------------------------------~~~ssrsh~i 235 (409)
||+|||++.++|+ +..|||||++
T Consensus 160 ~vS~~EIYnE~i~DLL~~~~~~~l~i~~~~~~~g~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~i 239 (373)
T 2wbe_C 160 RISYLELYNEELCDLLSTDDTTKIRIFDDSTKKGSVIIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTV 239 (373)
T ss_dssp EEEEEEEETTEEEESSCTTSCSCCCEEECSSSSSCEEETTCCCEEESSHHHHHHHHHHHHHHHTTTCSCHHHHHHHSEEE
T ss_pred EEEEEEEeCCeEEECCCCCCCCCceeEeccCCCCcEEecCceEEccCCHHHHHHHHHHHhhhhccccccCCCCCCCccEE
Confidence 9999999988886 1237899999
Q ss_pred EEEEEEeeccc---cceeEEeEEEEeecCCcccccccCCc-cchhhhhcccchhHHHHHHHHHHHhcCCCCcccCCchhh
Q psy4062 236 LMVYVKMQDKA---TKQMKMVKLSMIDLAGSERAAANSSN-QMRFKEGSNINKSLLALGNCINSLADGCRHVPYRDSKLT 311 (409)
Q Consensus 236 ~~i~v~~~~~~---~~~~~~skL~~VDLAGSEr~~~~~~~-~~r~~E~~~IN~SL~aL~~vI~aL~~~~~~iPyRdSkLT 311 (409)
|+|.+...... ......++|+|||||||||..++++. |.|++|+.+||+||++|++||.+|+++..||||||||||
T Consensus 240 f~i~v~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT 319 (373)
T 2wbe_C 240 FSIVVHIRENGIEGEDMLKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVDRAPHVPYRESKLT 319 (373)
T ss_dssp EEEEEEECTTCTTTCCEEEEEEEEEEECCCC--------------------CHHHHHHHHHHHHHHHCSSCCCGGGCHHH
T ss_pred EEEEEEEecCCCCCCcceeEEEEEEEECCCCCccccccCccccchhHHHHHHHHHHHHHHHHHHHHcCCCcCccccchHH
Confidence 99999876532 34567899999999999999999887 999999999999999999999999999999999999999
Q ss_pred HhhhhccCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHHhcCcccceeeccC
Q psy4062 312 RILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKIKAKVSRTFKS 363 (409)
Q Consensus 312 ~LLk~sLgGn~~t~~I~~isP~~~~~~eTl~TL~fa~rak~Ik~~~~~n~~~ 363 (409)
|||||+|||||+|+||+||||+..+++||++||+||+|||+|+|+|++|..-
T Consensus 320 ~lLqdsLgGnskt~mIa~isP~~~~~~ETlsTLrfA~rak~I~n~p~vN~~~ 371 (373)
T 2wbe_C 320 RLLQESLGGRTKTSIIATISPGHKDIEETLSTLEYAHRAKNIQNKPEVNQKL 371 (373)
T ss_dssp HHTHHHHHSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCEECCCCCEEC
T ss_pred HHHHHHhCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccccceecccc
Confidence 9999999999999999999999999999999999999999999999999753
No 7
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=100.00 E-value=2e-76 Score=593.16 Aligned_cols=273 Identities=33% Similarity=0.560 Sum_probs=244.2
Q ss_pred CCCeEEEEEeCCCCChhhccCCceEEEEeCCcEEEeCCCCCCCcceeeccccchhhccccCCCceeEeeceEeCCCCCch
Q psy4062 70 QSHMKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKSKEMEFLFDRVYGPSESNQ 149 (409)
Q Consensus 70 ~~~ikV~vRvRP~~~~E~~~~~~~~v~~~~~~~ii~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~asQ~ 149 (409)
+++|+|+|||||+++.|...+...++...+..++.. +.. ....+.|.||+||+++++|+
T Consensus 4 ~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~v~~-~~~--------------------~~~~~~f~FD~Vf~~~~~Q~ 62 (369)
T 3cob_A 4 KGKIRVYCRLRPLCEKEIIAKERNAIRSVDEFTVEH-LWK--------------------DDKAKQHMYDRVFDGNATQD 62 (369)
T ss_dssp CCBCEEEEEECCCCHHHHHTTCCBCEEECSSSEEEE-ECT--------------------TSCEEEEECSEEECTTCCHH
T ss_pred CCCeEEEEECCCCChhhccCCCcEEEEcCCcEEEEe-cCC--------------------CCCceEEecCEEECCCCCcc
Confidence 679999999999999997766554444434333322 111 12346899999999999999
Q ss_pred hhhccchHHHHHHHhcCcceEEEeeccCCCCceeeecCCCCCCchhhhhhhhhhHHHhhhhce---------eEEEEEec
Q psy4062 150 DVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGNENHKGIMYLTMGIRNRVSALTRQM---------CTMRMYKT 220 (409)
Q Consensus 150 eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G~~~~~GIi~~~~~~~~lf~~~~~~~---------s~~eiy~~ 220 (409)
+||+. +.|+|+++++|||+||||||||||||||||+|+++++|||||++.+ +|..+.... ||+|||++
T Consensus 63 ~Vy~~-~~~lv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~--lF~~i~~~~~~~~~~v~vS~~EIYnE 139 (369)
T 3cob_A 63 DVFED-TKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSE--LFRIMKKDSNKFSFSLKAYMVELYQD 139 (369)
T ss_dssp HHHHT-TTHHHHHHHTTCEEEEEEEECTTSSHHHHHTBCSSSBCHHHHHHHH--HHHHHHHTTTTEEEEEEEEEEEECSS
T ss_pred eehhh-hhhhhHhhhcCCceEEEEECCCCCCCeEeecCCCCCCchhHHHHHH--HHHHHHhhccCceeEEEEEEEEEeCc
Confidence 99999 6999999999999999999999999999999999999999999999 999886542 89999999
Q ss_pred eeeEe-------------------------------------------------------ecCcccceeeEEEEEEeecc
Q psy4062 221 CLILR-------------------------------------------------------RKPSICEKMQLMVYVKMQDK 245 (409)
Q Consensus 221 ~~~~~-------------------------------------------------------~~~ssrsh~i~~i~v~~~~~ 245 (409)
.++|+ +..|||||++|++++...+.
T Consensus 140 ~i~DLL~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~ 219 (369)
T 3cob_A 140 TLVDLLLPKQAKRLKLDIKKDSKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNL 219 (369)
T ss_dssp CEEESSCCSSSCCCCCEEEECTTSCEEEETCCCEEECSHHHHHHHHHHHHHHTCCCSCCTTCHHHHSEEEEEEEEEEEET
T ss_pred eeeecCCCcccCCcceEEEECCCCCEEccCCEEEEeCCHHHHHHHHHHHhhcceeecccCCCCCCcceEEEEEEEEEecC
Confidence 88886 12378999999999999887
Q ss_pred ccceeEEeEEEEeecCCcccccccCCccchhhhhcccchhHHHHHHHHHHHhcCCCCcccCCchhhHhhhhccCCCccEE
Q psy4062 246 ATKQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLADGCRHVPYRDSKLTRILKDSLGGNCKTV 325 (409)
Q Consensus 246 ~~~~~~~skL~~VDLAGSEr~~~~~~~~~r~~E~~~IN~SL~aL~~vI~aL~~~~~~iPyRdSkLT~LLk~sLgGn~~t~ 325 (409)
.......++|+|||||||||..++++.|.|++|+.+||+||++||+||.+|++++.||||||||||+||||+|||||+|+
T Consensus 220 ~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~ 299 (369)
T 3cob_A 220 QTQAIARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGNQHIPYRNHKLTMLMSDSLGGNAKTL 299 (369)
T ss_dssp TTCCEEEEEEEEEECCCSSCCCCCSSCSHHHHHHHHHTHHHHHHHHHHHHHHTTCSCCCGGGCHHHHHTTTTTTSSSEEE
T ss_pred CCCcEEEEEEEEEeCCCCCcccccCccchhhHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcCCHHHHHHHHhcCCCccEE
Confidence 77888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHhcCcccceeeccCCch
Q psy4062 326 MIANIAPTALSYEDSYNTLKYATRAKKIKAKVSRTFKSGAH 366 (409)
Q Consensus 326 ~I~~isP~~~~~~eTl~TL~fa~rak~Ik~~~~~n~~~~~~ 366 (409)
||+||||+..+++||++||+||+|||+|+|+|.+|....+.
T Consensus 300 mIa~isP~~~~~~ETl~TLrfA~rak~i~~~~~~n~~~~ei 340 (369)
T 3cob_A 300 MFVNISPAESNLDETHNSLTYASRVRSIVNDPSKNVSSKEV 340 (369)
T ss_dssp EEEEECCBGGGHHHHHHHHHHHHHHHTCBCCCCCCEECHHH
T ss_pred EEEEeCCccccHHHHHHHHHHHHHHhhcccCCcccCCHHHH
Confidence 99999999999999999999999999999999999887433
No 8
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=100.00 E-value=1.3e-76 Score=594.10 Aligned_cols=282 Identities=33% Similarity=0.495 Sum_probs=229.6
Q ss_pred CCCCCeEEEEEeCCCCChhhccCCceEEEEeCC---cEEEeCCCCCCCcceeeccccchhhccccCCCceeEeeceEeCC
Q psy4062 68 GEQSHMKVYIRVRPQSQKEEDGCHREIVKILNR---DTIIFDPKQDDSEFFFHGVKQSLRDINKKKSKEMEFLFDRVYGP 144 (409)
Q Consensus 68 ~~~~~ikV~vRvRP~~~~E~~~~~~~~v~~~~~---~~ii~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~ 144 (409)
+..++|+|+|||||+++.|...+...++.+.++ ..+.. ..+.|.||+||++
T Consensus 8 ~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~i~~--------------------------~~~~f~FD~Vf~~ 61 (365)
T 2y65_A 8 PAEDSIKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISI--------------------------AGKVYLFDKVFKP 61 (365)
T ss_dssp CCEEECEEEEEECCCCHHHHHTTCCBCEECCSSSTTCEEEE--------------------------TTEEEECSEEECT
T ss_pred CCCCCeEEEEEcCcCChhHhccCCceEEEeCCCCCCcEEEE--------------------------CCEEEeCceEecC
Confidence 456799999999999999988777666665432 11111 2357999999999
Q ss_pred CCCchhhhccchHHHHHHHhcCcceEEEeeccCCCCceeeecCCC---CCCchhhhhhhhhhHHHhhhhc---------e
Q psy4062 145 SESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGNE---NHKGIMYLTMGIRNRVSALTRQ---------M 212 (409)
Q Consensus 145 ~asQ~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G~~---~~~GIi~~~~~~~~lf~~~~~~---------~ 212 (409)
+++|++||+.++.|+|+++|+|||+||||||||||||||||+|.. .++|||||++.+ +|..+... .
T Consensus 62 ~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~--lF~~i~~~~~~~~~~v~v 139 (365)
T 2y65_A 62 NASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVND--IFNHIYAMEVNLEFHIKV 139 (365)
T ss_dssp TCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHH--HHHHHHHCCSCEEEEEEE
T ss_pred CCCHHHHHHHhhhhHHHHHhCCCceEEEeecCCCCCCceEEecCCCCcccCChHHHHHHH--HHHHHHhccCCceEEEEE
Confidence 999999999999999999999999999999999999999999964 456999999999 99988653 2
Q ss_pred eEEEEEeceeeEe----------------------------------------------------ecCcccceeeEEEEE
Q psy4062 213 CTMRMYKTCLILR----------------------------------------------------RKPSICEKMQLMVYV 240 (409)
Q Consensus 213 s~~eiy~~~~~~~----------------------------------------------------~~~ssrsh~i~~i~v 240 (409)
||+|||++.++|+ +..|||||++|+|++
T Consensus 140 S~~EIYnE~i~DLL~~~~~~l~i~e~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v 219 (365)
T 2y65_A 140 SYYEIYMDKIRDLLDVSKVNLSVHEDKNRVPYVKGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINV 219 (365)
T ss_dssp EEEEEETTEEEETTCTTCCSBCEEECSSSCEEETTCCCEEECSHHHHHHHHHHHHHHHTTTCSCHHHHHHTSEEEEEEEE
T ss_pred EEEEEECCeeeecccCCcCCceEEECCCCCEEecCCEEEecCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEE
Confidence 9999999998887 123789999999999
Q ss_pred EeeccccceeEEeEEEEeecCCcccccccCCccchhhhhcccchhHHHHHHHHHHHhcCC-CCcccCCchhhHhhhhccC
Q psy4062 241 KMQDKATKQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLADGC-RHVPYRDSKLTRILKDSLG 319 (409)
Q Consensus 241 ~~~~~~~~~~~~skL~~VDLAGSEr~~~~~~~~~r~~E~~~IN~SL~aL~~vI~aL~~~~-~~iPyRdSkLT~LLk~sLg 319 (409)
.+.+........++|+|||||||||..++++.|.+++|+.+||+||++||+||.+|++++ .||||||||||+||||+||
T Consensus 220 ~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLg 299 (365)
T 2y65_A 220 KQENLENQKKLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQESLG 299 (365)
T ss_dssp EEEETTTCCEEEEEEEEEECCCCCC----------------CCHHHHHHHHHHHHHHHCCCSCCCGGGCHHHHHTGGGTT
T ss_pred EEEecCCCCEeEEEEEEEECCCCCcchhcCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccCHHHHHHHhhcC
Confidence 988877777888999999999999999999999999999999999999999999999874 8999999999999999999
Q ss_pred CCccEEEEEEeCCCCCCHHHHHHHHHHHHHHhcCcccceeeccCCchhhhhhhhCCcC
Q psy4062 320 GNCKTVMIANIAPTALSYEDSYNTLKYATRAKKIKAKVSRTFKSGAHFKLEYLTGGVS 377 (409)
Q Consensus 320 Gn~~t~~I~~isP~~~~~~eTl~TL~fa~rak~Ik~~~~~n~~~~~~~~~~~~~~~~~ 377 (409)
|||+|+||+||||+..+++||++||+||+|||+|+|+|.+|.........+.+..+..
T Consensus 300 Gnskt~mI~~isP~~~~~~ETl~TL~fA~rak~I~n~~~~n~~~~~~~~~~~~~~e~~ 357 (365)
T 2y65_A 300 GNARTTIVICCSPASFNESETKSTLDFGRRAKTVKNVVCVNEELTAEEWKRRYEKEKE 357 (365)
T ss_dssp SSSEEEEEEEECCBGGGHHHHHHHHHHHHHHTTCEEECCCEEECCSHHHHHC------
T ss_pred CCccEEEEEEecCccCCHHHHHHHHHHHHHHhcccCcceeCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999987766544443344443
No 9
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=100.00 E-value=9e-77 Score=594.76 Aligned_cols=274 Identities=35% Similarity=0.538 Sum_probs=221.6
Q ss_pred CCCCeEEEEEeCCCCChhhccCCceEEEEeCCc-EEEeCCCCCCCcceeeccccchhhccccCCCceeEeeceEeCCCCC
Q psy4062 69 EQSHMKVYIRVRPQSQKEEDGCHREIVKILNRD-TIIFDPKQDDSEFFFHGVKQSLRDINKKKSKEMEFLFDRVYGPSES 147 (409)
Q Consensus 69 ~~~~ikV~vRvRP~~~~E~~~~~~~~v~~~~~~-~ii~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~as 147 (409)
..++|+|+|||||++..|...+...++.+.+.. .+.+..... ......+.|.||+||+++++
T Consensus 6 ~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~~~~~~~-----------------~~~~~~~~f~FD~Vf~~~~~ 68 (359)
T 1x88_A 6 KGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGL-----------------ADKSSRKTYTFDMVFGASTK 68 (359)
T ss_dssp ---CCEEEEEECCCCHHHHHTTCCCCEEEETTTTEEEEEEEEE-----------------TTEEEEEEEECSEEECTTCC
T ss_pred CCCCeEEEEEeCCCChhhhhcCCceEEEEcCCCcEEEEeCCCc-----------------cCCcCceEEeceEEEeccCc
Confidence 467999999999999999888888888876542 332211000 00124568999999999999
Q ss_pred chhhhccchHHHHHHHhcCcceEEEeeccCCCCceeeecCCCC-----------CCchhhhhhhhhhHHHhhhhce----
Q psy4062 148 NQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGNEN-----------HKGIMYLTMGIRNRVSALTRQM---- 212 (409)
Q Consensus 148 Q~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G~~~-----------~~GIi~~~~~~~~lf~~~~~~~---- 212 (409)
|++||+.++.|+|+++|+|||+||||||||||||||||+|+.. .+|||||++.+ +|+.+....
T Consensus 69 Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~~~~~~~Giipr~~~~--lF~~i~~~~~~~~ 146 (359)
T 1x88_A 69 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQ--IFEKLTDNGTEFS 146 (359)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEEEEECTTSSHHHHHTBCCCGGGCSCGGGCTTBCHHHHHHHH--HHHHTSSSSEEEE
T ss_pred hhHHHHHHHHHhHHHHhCCCceEEEEeCCCCCCCceEEeccCCccccccccccccCCchHHHHHH--HHHHHhccCceEE
Confidence 9999999999999999999999999999999999999999754 36999999999 999886532
Q ss_pred ---eEEEEEeceeeEe---------------------------------------------------------ecCcccc
Q psy4062 213 ---CTMRMYKTCLILR---------------------------------------------------------RKPSICE 232 (409)
Q Consensus 213 ---s~~eiy~~~~~~~---------------------------------------------------------~~~ssrs 232 (409)
||+|||++.++|+ +..||||
T Consensus 147 v~vS~~EIYnE~i~DLL~~~~~~~~~l~i~~~~~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRS 226 (359)
T 1x88_A 147 VKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRS 226 (359)
T ss_dssp EEEEEEEEETTEEEETTCTTSCTTCCBEEEEETTEEEEEEEETCCCEEECSGGGHHHHHHHHHHHHHHHHHHSTTHHHHC
T ss_pred EEEEEEEEeCceeeehhcccccccccceEEeccCCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccccCCCCCCCc
Confidence 9999999888776 1237899
Q ss_pred eeeEEEEEEeeccc---cceeEEeEEEEeecCCcccccccCCccchhhhhcccchhHHHHHHHHHHHhcCCCCcccCCch
Q psy4062 233 KMQLMVYVKMQDKA---TKQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLADGCRHVPYRDSK 309 (409)
Q Consensus 233 h~i~~i~v~~~~~~---~~~~~~skL~~VDLAGSEr~~~~~~~~~r~~E~~~IN~SL~aL~~vI~aL~~~~~~iPyRdSk 309 (409)
|++|+|++...... ......++|+|||||||||..++++.|+|++|+.+||+||++||+||.+|+++..||||||||
T Consensus 227 H~if~i~i~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSk 306 (359)
T 1x88_A 227 HSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESK 306 (359)
T ss_dssp EEEEEEEEEEEEECTTSCEEEEEEEEEEEECCCCCC---------------CCCHHHHHHHHHHHHHHTTCSCCCGGGSH
T ss_pred cEEEEEEEEEecccCCCCceEEEEEEEEEcCCCCCcccccCCcccchHHHhhhhHHHHHHHHHHHHHhcCCCCCccccch
Confidence 99999999875432 334678999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhhhhccCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHHhcCcccceeec
Q psy4062 310 LTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKIKAKVSRTF 361 (409)
Q Consensus 310 LT~LLk~sLgGn~~t~~I~~isP~~~~~~eTl~TL~fa~rak~Ik~~~~~n~ 361 (409)
||+||||+|||||+|+||+||||+..+++||++||+||+|||+|+|+|.+|.
T Consensus 307 LT~lLqdsLgGnskt~mIa~vsP~~~~~~ETl~TLrfA~rak~I~n~p~vn~ 358 (359)
T 1x88_A 307 LTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 358 (359)
T ss_dssp HHHHTGGGSSSSSEEEEEEEECCCGGGHHHHHHHHHHHHHHTTCCCCCC---
T ss_pred HHHHHHHHhCCCCeEEEEEEECCCcccHHHHHHHHHHHHHHhhccCcceeCC
Confidence 9999999999999999999999999999999999999999999999999986
No 10
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=100.00 E-value=2.4e-76 Score=584.37 Aligned_cols=258 Identities=36% Similarity=0.563 Sum_probs=237.5
Q ss_pred CCCCCeEEEEEeCCCCChhhccCCceEEEEeCCcEEEeCCCCCCCcceeeccccchhhccccCCCceeEeeceEeCCCCC
Q psy4062 68 GEQSHMKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKSKEMEFLFDRVYGPSES 147 (409)
Q Consensus 68 ~~~~~ikV~vRvRP~~~~E~~~~~~~~v~~~~~~~ii~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~as 147 (409)
...++|+|+|||||+++.|...+...++.+.++++++++ .+.|.||+||+++++
T Consensus 4 ~~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~--------------------------~~~f~FD~Vf~~~~s 57 (325)
T 1bg2_A 4 LAECNIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVIA--------------------------SKPYAFDRVFQSSTS 57 (325)
T ss_dssp CSSCEEEEEEEECCCCHHHHHHTCCBCCEEETTTEEEET--------------------------TEEEECSEEECTTCC
T ss_pred CCCCCEEEEEEcCCCChhHhccCCeeEEEECCCCeEEEC--------------------------CEEEECCeEeCCCCC
Confidence 457899999999999999988888888888877766542 236999999999999
Q ss_pred chhhhccchHHHHHHHhcCcceEEEeeccCCCCceeeecCCCC---CCchhhhhhhhhhHHHhhhhc---------eeEE
Q psy4062 148 NQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGNEN---HKGIMYLTMGIRNRVSALTRQ---------MCTM 215 (409)
Q Consensus 148 Q~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G~~~---~~GIi~~~~~~~~lf~~~~~~---------~s~~ 215 (409)
|++||+.+++|+|+++++|||+||||||||||||||||+|+.. ++|||||++.+ +|+.+... .||+
T Consensus 58 Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~--lF~~i~~~~~~~~~~v~vS~~ 135 (325)
T 1bg2_A 58 QEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQD--IFNYIYSMDENLEFHIKVSYF 135 (325)
T ss_dssp HHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHH--HHHHHHHHCSSEEEEEEEEEE
T ss_pred HHHHHHHHhhhhHHHHhCCCeEEEEEECCCCCCCceEecccCCCcccCccHHHHHHH--HHHHHHhccCCceEEEEEEEE
Confidence 9999999999999999999999999999999999999999754 45999999999 99988642 2999
Q ss_pred EEEeceeeEe----------------------------------------------------ecCcccceeeEEEEEEee
Q psy4062 216 RMYKTCLILR----------------------------------------------------RKPSICEKMQLMVYVKMQ 243 (409)
Q Consensus 216 eiy~~~~~~~----------------------------------------------------~~~ssrsh~i~~i~v~~~ 243 (409)
|||++.++|+ +..|||||++|+|++++.
T Consensus 136 EIYnE~v~DLL~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~ 215 (325)
T 1bg2_A 136 EIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQE 215 (325)
T ss_dssp EEETTEEEESSCTTCCSBCEEECTTSCEEETTCCCEEECSHHHHHHHHHHHHHHTTTTCSCHHHHHHHSEEEEEEEEEEE
T ss_pred EEecCeeeecccCCCCCceEEECCCCCEEecCceEEeCCCHHHHHHHHHHHHhhCceeecCCCCCCCCCeEEEEEEEEEE
Confidence 9999999887 123789999999999998
Q ss_pred ccccceeEEeEEEEeecCCcccccccCCccchhhhhcccchhHHHHHHHHHHHhcCCCCcccCCchhhHhhhhccCCCcc
Q psy4062 244 DKATKQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLADGCRHVPYRDSKLTRILKDSLGGNCK 323 (409)
Q Consensus 244 ~~~~~~~~~skL~~VDLAGSEr~~~~~~~~~r~~E~~~IN~SL~aL~~vI~aL~~~~~~iPyRdSkLT~LLk~sLgGn~~ 323 (409)
+........++|+|||||||||..++++.|.+++|+.+||+||++|++||.+|+++..||||||||||+||||+|||||+
T Consensus 216 ~~~~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGns~ 295 (325)
T 1bg2_A 216 NTQTEQKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNCR 295 (325)
T ss_dssp ETTTCCEEEEEEEEEECCCSCCCCCCSSSCTTSCCCCCCCHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHGGGTSSSSCE
T ss_pred ecCCCcEEEEEEEEEECCCCCcccccCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHhCCCCc
Confidence 87777788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHHHhcC
Q psy4062 324 TVMIANIAPTALSYEDSYNTLKYATRAKKI 353 (409)
Q Consensus 324 t~~I~~isP~~~~~~eTl~TL~fa~rak~I 353 (409)
|+||+||||+..+++||++||+||+|||+|
T Consensus 296 t~mia~vsP~~~~~~ETl~TL~fa~rak~I 325 (325)
T 1bg2_A 296 TTIVICCSPSSYNESETKSTLLFGQRAKTI 325 (325)
T ss_dssp EEEEEEECCBGGGHHHHHHHHHHHHTSCCC
T ss_pred EEEEEEECCccccHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999987
No 11
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=100.00 E-value=2.9e-76 Score=588.73 Aligned_cols=271 Identities=35% Similarity=0.548 Sum_probs=228.6
Q ss_pred CCCCeEEEEEeCCCCChhhccCCceEEEEe-CCcEEEeCCCCCCCcceeeccccchhhccccCCCceeEeeceEeCCCCC
Q psy4062 69 EQSHMKVYIRVRPQSQKEEDGCHREIVKIL-NRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKSKEMEFLFDRVYGPSES 147 (409)
Q Consensus 69 ~~~~ikV~vRvRP~~~~E~~~~~~~~v~~~-~~~~ii~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~as 147 (409)
+.++|+|+|||||+++.|...+...++.+. ++.++.. ....+.|.||+||+++++
T Consensus 2 e~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~i~~------------------------~~~~~~F~FD~Vf~~~~t 57 (349)
T 1t5c_A 2 EEGAVAVCVRVRPLNSREESLGETAQVYWKTDNNVIYQ------------------------VDGSKSFNFDRVFHGNET 57 (349)
T ss_dssp -CCCEEEEEEECCCSCSSCTTTTCCCCCEEEETTEEEE------------------------TTSSCEEECSCEECTTSC
T ss_pred CCCCEEEEEECCCCChhhhccCCCcEEEEeCCCCeEEE------------------------CCCCeEEECCEEECCCCC
Confidence 578999999999999999766655444332 2222221 012347999999999999
Q ss_pred chhhhccchHHHHHHHhcCcceEEEeeccCCCCceeeecCCCCCCchhhhhhhhhhHHHhhhhce--------eEEEEEe
Q psy4062 148 NQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGNENHKGIMYLTMGIRNRVSALTRQM--------CTMRMYK 219 (409)
Q Consensus 148 Q~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G~~~~~GIi~~~~~~~~lf~~~~~~~--------s~~eiy~ 219 (409)
|++||+.+++|+|+++|+|||+||||||||||||||||+|+++++|||||++.+ +|..+.... ||+|||+
T Consensus 58 Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~--lF~~i~~~~~~~~~v~vS~~EIYn 135 (349)
T 1t5c_A 58 TKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMGSEDHLGVIPRAIHD--IFQKIKKFPDREFLLRVSYMEIYN 135 (349)
T ss_dssp HHHHHHHTTHHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSSBCHHHHHHHH--HHHHGGGCTTEEEEEEEEEEEEET
T ss_pred HHHHHHHHHHHHHHHHHcCCccceeeecCCCCCCCeEEecCCCCCchHHHHHHH--HHHHHHhCcCCcEEEEEEEEEEeC
Confidence 999999999999999999999999999999999999999999999999999999 999987532 9999999
Q ss_pred ceeeEe------------------------------------------------------ecCcccceeeEEEEEEeecc
Q psy4062 220 TCLILR------------------------------------------------------RKPSICEKMQLMVYVKMQDK 245 (409)
Q Consensus 220 ~~~~~~------------------------------------------------------~~~ssrsh~i~~i~v~~~~~ 245 (409)
+.++|+ +..|||||++|++.+++...
T Consensus 136 E~i~DLL~~~~~~~~l~i~ed~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~ 215 (349)
T 1t5c_A 136 ETITDLLCGTQKMKPLIIREDVNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREK 215 (349)
T ss_dssp TEEEESSSSSCTTCCEEEEETTTTEEEETTCCCEECSSHHHHHHHHHHHHHTTSSSSSSSSCTTTTCEEEEEEEEEEEEC
T ss_pred CEEEEccCCCCCCCCceEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhcccccccccCCCCCCCceEEEEEEEEEecc
Confidence 998886 23489999999999988765
Q ss_pred c-----cceeEEeEEEEeecCCcccccccCCccchhhhhcccchhHHHHHHHHHHHhcCC--CCcccCCchhhHhhhhcc
Q psy4062 246 A-----TKQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLADGC--RHVPYRDSKLTRILKDSL 318 (409)
Q Consensus 246 ~-----~~~~~~skL~~VDLAGSEr~~~~~~~~~r~~E~~~IN~SL~aL~~vI~aL~~~~--~~iPyRdSkLT~LLk~sL 318 (409)
. ......++|+|||||||||..++++.|.|++|+.+||+||++|++||.+|++++ .|||||||||||||||+|
T Consensus 216 ~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~hvPyRdSkLT~lLqdsL 295 (349)
T 1t5c_A 216 GEPSNCEGSVKVSHLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLTRILQNSL 295 (349)
T ss_dssp C-------CEEEEEEEEEECCCGGGTC-------CCCSSSCCCHHHHHHHHHHHHHHHTCCTTSSCGGGSHHHHHTGGGT
T ss_pred CCCcCcCccEEEEEEEEEECCCCccccccCCccccchhhhHHhHHHHHHHHHHHHHhccCCCCCCcccccHHHHHHHHhc
Confidence 4 235678999999999999999999999999999999999999999999999876 699999999999999999
Q ss_pred CCCccEEEEEEeCCCCCCHHHHHHHHHHHHHHhcCcccceeeccCCchh
Q psy4062 319 GGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKIKAKVSRTFKSGAHF 367 (409)
Q Consensus 319 gGn~~t~~I~~isP~~~~~~eTl~TL~fa~rak~Ik~~~~~n~~~~~~~ 367 (409)
||||+|+||+||||. +++||++||+||+|||+|+|+|++|....+.+
T Consensus 296 gGnskt~mI~~isP~--~~~ETlsTL~fA~rak~I~n~~~vn~~~~~~~ 342 (349)
T 1t5c_A 296 GGNAKTRIICTITPV--SFDETLTALQFASTAKYMKNTPYVNEVSTDEL 342 (349)
T ss_dssp TSSSEEEEEEEECTT--CSHHHHHHHHHHHHHTTCCCCCCCCEEC----
T ss_pred CCCceEEEEEEeCCC--CHHHHHHHHHHHHHHhhcccCceeccCCCCCC
Confidence 999999999999997 59999999999999999999999998877654
No 12
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=100.00 E-value=4.1e-76 Score=591.40 Aligned_cols=271 Identities=35% Similarity=0.574 Sum_probs=226.3
Q ss_pred CCCeEEEEEeCCCCChhhccCCceEEEEeCCcEEEeCCCCCCCcceeeccccchhhccccCCCceeEeeceEeCCC----
Q psy4062 70 QSHMKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKSKEMEFLFDRVYGPS---- 145 (409)
Q Consensus 70 ~~~ikV~vRvRP~~~~E~~~~~~~~v~~~~~~~ii~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~---- 145 (409)
.++|+|+|||||+++.|...+...++.+.++.+++.+|... ....+.|.||+||++.
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~i~~~~~~-------------------~~~~~~f~FD~vf~~~~~~~ 63 (366)
T 2zfi_A 3 GASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQP-------------------KETPKSFSFDYSYWSHTSPE 63 (366)
T ss_dssp -CCEEEEEEECCCCHHHHHTTCCBCEEEETTEEEECCTTCT-------------------TSCCEEEECSEEEECSSCTT
T ss_pred CCCcEEEEECCCCChhhccCCCCeEEEECCCcEEEeccCCC-------------------CCCceEEecceEeecCcccc
Confidence 46899999999999999888888899999888877766432 1245689999999987
Q ss_pred ----CCchhhhccchHHHHHHHhcCcceEEEeeccCCCCceeeecCCC--CCCchhhhhhhhhhHHHhhhhc--------
Q psy4062 146 ----ESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGNE--NHKGIMYLTMGIRNRVSALTRQ-------- 211 (409)
Q Consensus 146 ----asQ~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G~~--~~~GIi~~~~~~~~lf~~~~~~-------- 211 (409)
++|++||+.+++|+|+++|+|||+||||||||||||||||+|++ +++|||||++.+ +|..+...
T Consensus 64 ~~~~asQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTm~G~~~~~~~Giipr~~~~--lF~~i~~~~~~~~~~~ 141 (366)
T 2zfi_A 64 DINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCED--LFSRINDTTNDNMSYS 141 (366)
T ss_dssp SSSCCCHHHHHHHTHHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBCSGGGCBCHHHHHHHH--HHHHHHTCCCTTEEEE
T ss_pred ccccCcHHHHHHHHHHHHHHHHhcCCeeEEEEeCCCCCCCceEeeCCCccCCCccHHHHHHH--HHHHHhhcccCCeeEE
Confidence 89999999999999999999999999999999999999999984 578999999999 99988653
Q ss_pred --eeEEEEEeceeeEe-----------------------------------------------------ecCcccceeeE
Q psy4062 212 --MCTMRMYKTCLILR-----------------------------------------------------RKPSICEKMQL 236 (409)
Q Consensus 212 --~s~~eiy~~~~~~~-----------------------------------------------------~~~ssrsh~i~ 236 (409)
.||+|||++.++|+ +..|||||++|
T Consensus 142 v~vS~~EIYnE~v~DLL~~~~~~~l~ire~~~~g~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if 221 (366)
T 2zfi_A 142 VEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVF 221 (366)
T ss_dssp EEEEEEEEETTEEEETTCTTTCSCBCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTSGGGGTTTHHHHSEEEE
T ss_pred EEEEEEEeeCCeEEEccccccCCCceEEEcCCCCEEEeCCEEEEECCHHHHHHHHHHHhhccccccccCCCCCCcceEEE
Confidence 29999999998887 22378999999
Q ss_pred EEEEEeeccc----cceeEEeEEEEeecCCcccccccCCccchhhhhcccchhHHHHHHHHHHHhcC------------C
Q psy4062 237 MVYVKMQDKA----TKQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLADG------------C 300 (409)
Q Consensus 237 ~i~v~~~~~~----~~~~~~skL~~VDLAGSEr~~~~~~~~~r~~E~~~IN~SL~aL~~vI~aL~~~------------~ 300 (409)
+|.+.+.... ......++|+|||||||||..++++.|.|++|+.+||+||++|++||.+|++. .
T Consensus 222 ~i~v~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~ 301 (366)
T 2zfi_A 222 NIIFTQKRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKT 301 (366)
T ss_dssp EEEEEEEEECTTTTCEEEEEEEEEEEECCCGGGC------CCCHHHHHHHHHHHHHHHHHHHHHHHHC------------
T ss_pred EEEEEEecccCCCCccceeEeEEEEEeCCCCccccccCCCccchhhhhhHhHHHHHHHHHHHHHHhcccccccccccccC
Confidence 9999876543 23456899999999999999999999999999999999999999999999863 4
Q ss_pred CCcccCCchhhHhhhhccCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHHhcCcccceeec
Q psy4062 301 RHVPYRDSKLTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKIKAKVSRTF 361 (409)
Q Consensus 301 ~~iPyRdSkLT~LLk~sLgGn~~t~~I~~isP~~~~~~eTl~TL~fa~rak~Ik~~~~~n~ 361 (409)
.||||||||||+||||+|||||+|+||+||||+..+++||++||+||+|||+|+|+|.++.
T Consensus 302 ~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ETlsTLrfA~rak~I~~~~~~~~ 362 (366)
T 2zfi_A 302 DFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVNH 362 (366)
T ss_dssp --CCGGGSHHHHHTGGGSSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHTC----------
T ss_pred CcccccccHHHHHHHHHhCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCCCCCCC
Confidence 7999999999999999999999999999999999999999999999999999999988764
No 13
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=100.00 E-value=7.3e-75 Score=574.93 Aligned_cols=260 Identities=33% Similarity=0.549 Sum_probs=220.8
Q ss_pred CCCeEEEEEeCCCCChhhccCC-ceEEEEe--CCcEEEeCCCCCCCcceeeccccchhhccccCCCceeEeeceEeCCCC
Q psy4062 70 QSHMKVYIRVRPQSQKEEDGCH-REIVKIL--NRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKSKEMEFLFDRVYGPSE 146 (409)
Q Consensus 70 ~~~ikV~vRvRP~~~~E~~~~~-~~~v~~~--~~~~ii~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~a 146 (409)
+++|+|+|||||+++.|..... ..++.+. ++.++... ...+.+.|.||+||++++
T Consensus 3 ~~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~f~FD~Vf~~~~ 60 (330)
T 2h58_A 3 KGNIRVIARVRPVTKEDGEGPEATNAVTFDADDDSIIHLL----------------------HKGKPVSFELDKVFSPQA 60 (330)
T ss_dssp --CEEEEEEECCCCGGGCSSGGGSBCEEECSSCTTEEEEE----------------------ETTEEEEEECSEEECTTC
T ss_pred CCCEEEEEEcCCCChhhcccCCCccEEEEeCCCCcEEEEc----------------------CCCCeeEEecCeEeCCCC
Confidence 6799999999999998864322 2333332 12222110 123456899999999999
Q ss_pred CchhhhccchHHHHHHHhcCcceEEEeeccCCCCceeeecCCCCCCchhhhhhhhhhHHHhhhhce---------eEEEE
Q psy4062 147 SNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGNENHKGIMYLTMGIRNRVSALTRQM---------CTMRM 217 (409)
Q Consensus 147 sQ~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G~~~~~GIi~~~~~~~~lf~~~~~~~---------s~~ei 217 (409)
+|++||+.+ .|+|+++++|||+||||||||||||||||+|+++++|||||++.+ +|..+.... ||+||
T Consensus 61 ~Q~~Vy~~v-~~lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~--lF~~i~~~~~~~~~~v~vS~~EI 137 (330)
T 2h58_A 61 SQQDVFQEV-QALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAENPGINQRALQL--LFSEVQEKASDWEYTITVSAAEI 137 (330)
T ss_dssp CHHHHHTTT-HHHHHHHHTTCCEEEEEESSTTSSHHHHHTBCSSSBCHHHHHHHH--HHHHHHTSCTTEEEEEEEEEEEE
T ss_pred CcHhHHHHH-HHHHHHHhCCCEEEEEeECCCCCCCcEEEecCCCCCcHHHHHHHH--HHHhhhcccCCceEEEEEEEEEE
Confidence 999999985 899999999999999999999999999999999999999999999 999986532 99999
Q ss_pred EeceeeEe-------------------------------------------------------ecCcccceeeEEEEEEe
Q psy4062 218 YKTCLILR-------------------------------------------------------RKPSICEKMQLMVYVKM 242 (409)
Q Consensus 218 y~~~~~~~-------------------------------------------------------~~~ssrsh~i~~i~v~~ 242 (409)
|++.++|+ +..|||||++|++++++
T Consensus 138 YnE~i~DLL~~~~~~~l~i~~~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~ 217 (330)
T 2h58_A 138 YNEVLRDLLGKEPQEKLEIRLCPDGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRG 217 (330)
T ss_dssp ETTEEEETTSCSSCCCCCCEECTTSSCCEECTTCCCEEECSHHHHHHHHHHHHHHTTCTTCCSCSCGGGSEEEEEEEEEE
T ss_pred ECCChhhcccccccccceEEEeecCCCCEecCCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCcCCccEEEEEEEEE
Confidence 99988886 23489999999999998
Q ss_pred eccccceeEEeEEEEeecCCcccccccCCccchhhhhcccchhHHHHHHHHHHHhcCCCCcccCCchhhHhhhhccCCCc
Q psy4062 243 QDKATKQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLADGCRHVPYRDSKLTRILKDSLGGNC 322 (409)
Q Consensus 243 ~~~~~~~~~~skL~~VDLAGSEr~~~~~~~~~r~~E~~~IN~SL~aL~~vI~aL~~~~~~iPyRdSkLT~LLk~sLgGn~ 322 (409)
.+........++|+|||||||||..++++.|.|++|+.+||+||++|++||.+|++++.||||||||||+||||+|||||
T Consensus 218 ~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~r~~E~~~IN~SL~aLg~vI~aL~~~~~hvPyRdSkLT~lL~dsLgGns 297 (330)
T 2h58_A 218 VDCSTGLRTTGKLNLVDLAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAALRSRQGHVPFRNSKLTYLLQDSLSGDS 297 (330)
T ss_dssp EETTTTEEEEEEEEEEECCCCCCCC------HHHHHHHHHHHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTHHHHSTTC
T ss_pred EecCCCcEEEEEEEEEeCCCCCcccccCCchhhhHHHHHhhHhHHHHHHHHHHHhcCCCCCcccccHHHHHHHHHhCCCc
Confidence 88777778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEeCCCCCCHHHHHHHHHHHHHHhcCc
Q psy4062 323 KTVMIANIAPTALSYEDSYNTLKYATRAKKIK 354 (409)
Q Consensus 323 ~t~~I~~isP~~~~~~eTl~TL~fa~rak~Ik 354 (409)
+|+||+||||+..+++||++||+||+|||+|+
T Consensus 298 ~t~mI~~isP~~~~~~ETl~TL~fA~rak~i~ 329 (330)
T 2h58_A 298 KTLMVVQVSPVEKNTSETLYSLKFAERVRSVE 329 (330)
T ss_dssp EEEEEEEECCBGGGHHHHHHHHHHHHHHC---
T ss_pred eEEEEEEeCCccccHHHHHHHHHHHHHHhhCc
Confidence 99999999999999999999999999999986
No 14
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=100.00 E-value=6e-75 Score=594.92 Aligned_cols=283 Identities=32% Similarity=0.513 Sum_probs=222.9
Q ss_pred CCCCeEEEEEeCCCCChhhccCCceEEEEeCC--cEEEeCCCCCCCcceeeccccchhhccccCCCceeEeeceEeCC--
Q psy4062 69 EQSHMKVYIRVRPQSQKEEDGCHREIVKILNR--DTIIFDPKQDDSEFFFHGVKQSLRDINKKKSKEMEFLFDRVYGP-- 144 (409)
Q Consensus 69 ~~~~ikV~vRvRP~~~~E~~~~~~~~v~~~~~--~~ii~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~-- 144 (409)
..++|+|+|||||+++.|...+...++.+.+. .+.+..|...... .... .........+.|.||+||++
T Consensus 36 ~~~~vrV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~----~~~g---~~~~~~~~~~~F~FD~vF~~~~ 108 (443)
T 2owm_A 36 PGANVRVVVRVRAFLPRELERNAECIVEMDPATERTSLLVPQETDFA----DARG---ARSRRVLEEKSFTFDKSFWSHN 108 (443)
T ss_dssp CCEECEEEEEEECCCHHHHHTTCCCCEEECSSSCEEEECCCC----------------------CCCEEEECSEEEEESC
T ss_pred CCCCeEEEEEeCCCChHHhhcCCceEEEEcCCCccEEEecCCCcccc----cccc---cccccccCCceEecCeEeCCCC
Confidence 36799999999999999988888888887654 2344444322110 0000 00001234678999999976
Q ss_pred -----CCCchhhhccchHHHHHHHhcCcceEEEeeccCCCCceeeecCCCCCCchhhhhhhhhhHHHhhhhc--------
Q psy4062 145 -----SESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGNENHKGIMYLTMGIRNRVSALTRQ-------- 211 (409)
Q Consensus 145 -----~asQ~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G~~~~~GIi~~~~~~~~lf~~~~~~-------- 211 (409)
.++|++||+.++.|+|+++|+|||+||||||||||||||||+|+++++|||||++.+ +|..+...
T Consensus 109 ~~~~~~asQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM~G~~~~~GIipr~~~~--lF~~i~~~~~~~~~~~ 186 (443)
T 2owm_A 109 TEDEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGTPDQPGLIPRTCED--LFQRIASAQDETPNIS 186 (443)
T ss_dssp TTSTTCCCHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHHTCCTTSCCHHHHHHHH--HHHHHHHTTTTSTTCE
T ss_pred cCCccCCCHHHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEeecCCCCCchHHHHHHH--HHHHHHhhhcccCCce
Confidence 489999999999999999999999999999999999999999999999999999999 99988653
Q ss_pred ----eeEEEEEeceeeEe---------------------------------------------------------ecCcc
Q psy4062 212 ----MCTMRMYKTCLILR---------------------------------------------------------RKPSI 230 (409)
Q Consensus 212 ----~s~~eiy~~~~~~~---------------------------------------------------------~~~ss 230 (409)
.||+|||++.++|+ +..||
T Consensus 187 ~~V~vS~lEIYnE~i~DLL~~~~~~~~~~~l~ire~~~~g~~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SS 266 (443)
T 2owm_A 187 YNVKVSYFEVYNEHVRDLLAPVVPNKPPYYLKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSS 266 (443)
T ss_dssp EEEEEEEEEEETTEEEETTSCCCSSCCCCCCEEEEETTTEEEEETCCCEECCSHHHHHHHHHHHHTTSCBCSSSSSCBCT
T ss_pred EEEEEEEEEEECCEeeEccCccccCCcccccceeECCCCCEeccCCEEEEcCCHHHHHHHHHHHHhhCCcccCcCCCccC
Confidence 29999999888876 23489
Q ss_pred cceeeEEEEEEeeccc----cceeEEeEEEEeecCCcccccccCCccchhhhhcccchhHHHHHHHHHHHhcCC------
Q psy4062 231 CEKMQLMVYVKMQDKA----TKQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLADGC------ 300 (409)
Q Consensus 231 rsh~i~~i~v~~~~~~----~~~~~~skL~~VDLAGSEr~~~~~~~~~r~~E~~~IN~SL~aL~~vI~aL~~~~------ 300 (409)
|||++|+|++++.... ......++|+|||||||||..++++.|+|++|+.+||+||++||+||.+|++++
T Consensus 267 RSH~Ifti~v~~~~~~~~~~~~~~~~skL~lVDLAGSER~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~~~~~~ 346 (443)
T 2owm_A 267 RSHAVFTIMLKQIHHDLETDDTTERSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLGRVIAALADPKSSASRP 346 (443)
T ss_dssp TEEEEEEEEEEEEC-------CCEEEEEEEEEECCCCCC--------------CCSSHHHHHHHHHHHHHCC--------
T ss_pred CCeEEEEEEEEEeecccCCCCcceEEEEEEEEECCCCccccccCCccccccchhhhcHHHHHHHHHHHHHhccccccccc
Confidence 9999999999876432 335678999999999999999999999999999999999999999999998753
Q ss_pred ----------------CCcccCCchhhHhhhhccCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHHhcCcccceeecc
Q psy4062 301 ----------------RHVPYRDSKLTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKIKAKVSRTFK 362 (409)
Q Consensus 301 ----------------~~iPyRdSkLT~LLk~sLgGn~~t~~I~~isP~~~~~~eTl~TL~fa~rak~Ik~~~~~n~~ 362 (409)
.|||||||||||||||+|||||+|+||+||||+ +|+||++||+||+|||+|+|++++|..
T Consensus 347 ~~~~~~g~~~~~~~~~~hVPYRdSkLTrLLqdsLgGnskT~mIa~iSP~--~~~ETlsTLrfA~rak~I~n~~~vN~~ 422 (443)
T 2owm_A 347 SSPVKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACISPT--DYDETLSTLRYADQAKRIRTRAVVNQV 422 (443)
T ss_dssp -----------------CCCGGGSHHHHHSTTTTTSSCEEEEEEEECSS--CHHHHHHHHHHHHHHTTCEECCCCCCC
T ss_pred ccccccccccccccCCCcccCcccHhHHHHHHhhCCCCcEEEEEEeccc--cHHHHHHHHHHHHHHhhccccceeccc
Confidence 389999999999999999999999999999997 599999999999999999999999983
No 15
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=100.00 E-value=6.6e-75 Score=580.79 Aligned_cols=272 Identities=35% Similarity=0.533 Sum_probs=232.8
Q ss_pred CeEEEEEeCCCCChhhccCCceEEEEeCCcEEEeCCCCCCCcceeeccccchhhccccCCCceeEeeceEeCCCCCchhh
Q psy4062 72 HMKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKSKEMEFLFDRVYGPSESNQDV 151 (409)
Q Consensus 72 ~ikV~vRvRP~~~~E~~~~~~~~v~~~~~~~ii~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~asQ~eV 151 (409)
+|||+|||||+++.|...+...+|.+.+++++.++.+..... . .+....+.|.||+||+++++|++|
T Consensus 1 ~IrV~vRvRP~~~~E~~~~~~~~v~~~~~~~i~i~~~~~~~~------------~-~~~~~~~~F~FD~Vf~~~~~Q~~V 67 (360)
T 1ry6_A 1 MIKVVVRKRPLSELEKKKKDSDIITVKNNCTLYIDEPRYKVD------------M-TKYIERHEFIVDKVFDDTVDNFTV 67 (360)
T ss_dssp CEEEEEEECCCCHHHHHTTCCBCEEEEETTEEEEEEEEEETT------------T-EEEEEEEEEECSEEECTTCCHHHH
T ss_pred CeEEEEECCCCChHHhccCCceEEEECCCCEEEEeCCccccc------------c-ccccccceEEeeeEecCCCCHHHH
Confidence 589999999999999988888999999888877654321110 0 001234689999999999999999
Q ss_pred hccchHHHHHHHhc-CcceEEEeeccCCCCceeeecCCC-----CCCchhhhhhhhhhHHHhhhhc---------eeEEE
Q psy4062 152 YDGSTKDIIASLLE-GYNCSVFVYGATGAGKTHTMLGNE-----NHKGIMYLTMGIRNRVSALTRQ---------MCTMR 216 (409)
Q Consensus 152 f~~~~~plV~~vl~-G~N~tI~aYGqTGSGKTyTm~G~~-----~~~GIi~~~~~~~~lf~~~~~~---------~s~~e 216 (409)
|+.+++|+|+++++ |||+||||||||||||||||+|++ +++||+|+++.+ +|..+... .||+|
T Consensus 68 y~~~~~plv~~~~~~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~Giipr~~~~--lF~~i~~~~~~~~~~v~vS~~E 145 (360)
T 1ry6_A 68 YENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYAAGD--IFTFLNIYDKDNTKGIFISFYE 145 (360)
T ss_dssp HHHHTHHHHHHHHHHCCEEEEEEECCTTSSHHHHHHBSSSTTTSSCBCHHHHHHHH--HHHHHHHHCSSSCEEEEEEEEE
T ss_pred HHHHhhhhhhhhccCCceeEEEeeCCCCCCCCEEEecCCCCCCccCCCcHHHHHHH--HHHHHHhhccCCceEEEEEEEE
Confidence 99999999999996 999999999999999999999974 679999999999 99988642 29999
Q ss_pred EEeceeeEe---------------------------------------------------ecCcccceeeEEEEEEeecc
Q psy4062 217 MYKTCLILR---------------------------------------------------RKPSICEKMQLMVYVKMQDK 245 (409)
Q Consensus 217 iy~~~~~~~---------------------------------------------------~~~ssrsh~i~~i~v~~~~~ 245 (409)
||++.++|+ +..|||||++|+|.+.....
T Consensus 146 IYnE~v~DLL~~~~~~~~~e~~~~~~~v~gl~~~~V~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~ 225 (360)
T 1ry6_A 146 IYCGKLYDLLQKRKMVAALENGKKEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKDINK 225 (360)
T ss_dssp EETTEEEESCCC-----------CCBCGGGSCCEEECSHHHHHHHHHHHHHHHHHCTTCCTTGGGGSEEEEEEEEEETTT
T ss_pred eeCCeeEEcccCCccceeeEcCCCCEEEcCcEEEEeCCHHHHHHHHHHHhhhhhcccccccCCCccceEEEEEEEEeccC
Confidence 999999887 23489999999999987543
Q ss_pred ccceeEEeEEEEeecCCcccccccCCcc-chhhhhcccchhHHHHHHHHHHHhcCCCCcccCCchhhHhhhhccCCCccE
Q psy4062 246 ATKQMKMVKLSMIDLAGSERAAANSSNQ-MRFKEGSNINKSLLALGNCINSLADGCRHVPYRDSKLTRILKDSLGGNCKT 324 (409)
Q Consensus 246 ~~~~~~~skL~~VDLAGSEr~~~~~~~~-~r~~E~~~IN~SL~aL~~vI~aL~~~~~~iPyRdSkLT~LLk~sLgGn~~t 324 (409)
....++|+|||||||||..++++.+ .+++|+.+||+||++|++||.+|++++.|||||||||||||||+|||||+|
T Consensus 226 ---~~~~skL~lVDLAGSEr~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt 302 (360)
T 1ry6_A 226 ---NTSLGKIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDKNHIPFRDSELTKVLRDIFVGKSKS 302 (360)
T ss_dssp ---TEEEEEEEEEECCCTTGGGGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHTTSTTSCCGGGCHHHHHTGGGGSSSCEE
T ss_pred ---CcceeEEEEEECCCCccccccccccccchHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCHHHHHHHHHhCCCCeE
Confidence 3568999999999999999998776 578999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHHhcCcccceeec
Q psy4062 325 VMIANIAPTALSYEDSYNTLKYATRAKKIKAKVSRTF 361 (409)
Q Consensus 325 ~~I~~isP~~~~~~eTl~TL~fa~rak~Ik~~~~~n~ 361 (409)
+||+||||+..+++||++||+||+|||+|+|.+..|.
T Consensus 303 ~mIa~isP~~~~~~ETlsTLrfA~rak~i~n~~~~~~ 339 (360)
T 1ry6_A 303 IMIANISPTISCCEQTLNTLRYSSRVKNKGNSKLEGK 339 (360)
T ss_dssp EEEEEECCBGGGHHHHHHHHHHHHHHCC---------
T ss_pred EEEEEeCCCcccHHHHHHHHHHHHHHhhcccCcccCC
Confidence 9999999999999999999999999999999766553
No 16
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=100.00 E-value=1.4e-74 Score=576.35 Aligned_cols=260 Identities=36% Similarity=0.545 Sum_probs=214.5
Q ss_pred CCCCCCCeEEEEEeCCCCChhhccCCceEEEEeCCcEEEeCCCCCCCcceeeccccchhhccccCCCceeEeeceEeCCC
Q psy4062 66 HTGEQSHMKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKSKEMEFLFDRVYGPS 145 (409)
Q Consensus 66 ~~~~~~~ikV~vRvRP~~~~E~~~~~~~~v~~~~~~~ii~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~ 145 (409)
+..+.++|+|+|||||+++.|...+...|+.+.++...+. ...++.|.||+||+++
T Consensus 6 ~~~~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~------------------------~~~~~~f~FD~Vf~~~ 61 (344)
T 4a14_A 6 PGAEEAPVRVALRVRPLLPKELLHGHQSCLQVEPGLGRVT------------------------LGRDRHFGFHVVLAED 61 (344)
T ss_dssp ---CCCCCEEEEEECCCCHHHHHTTCCBCEEEEGGGTEEE------------------------ETTTEEEECSEEECTT
T ss_pred CCccccceEEEEEecccchHHHhccCeeEEEEcCCCceEE------------------------ecccceEEEEEEEecC
Confidence 4467889999999999999998888888887765432211 1234579999999999
Q ss_pred CCchhhhccchHHHHHHHhcCcceEEEeeccCCCCceeeecCC------CCCCchhhhhhhhhhHHHhhhhce-------
Q psy4062 146 ESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGN------ENHKGIMYLTMGIRNRVSALTRQM------- 212 (409)
Q Consensus 146 asQ~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G~------~~~~GIi~~~~~~~~lf~~~~~~~------- 212 (409)
++|++||+.++.|+|+++|+|||+||||||||||||||||+|. ++++|||||++.+ +|..+....
T Consensus 62 ~~Q~~vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~Giipr~~~~--lF~~i~~~~~~~~~v~ 139 (344)
T 4a14_A 62 AGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAE--AFKLIDENDLLDCLVH 139 (344)
T ss_dssp CCHHHHHHHHTHHHHHHHHTTCCEEEEEESSTTSSHHHHHCC--------CCCCHHHHHHHH--HHHHHHHCTTSEEEEE
T ss_pred cchhHHHHHHHHHHHHHHHhhcCeeEEEecccCCCceEeecccchhhhhhcccCCchHHHHH--HHHhcccccceeeEEE
Confidence 9999999999999999999999999999999999999999997 4789999999999 999987643
Q ss_pred -eEEEEEeceeeEe------------------------------------------------------ecCcccceeeEE
Q psy4062 213 -CTMRMYKTCLILR------------------------------------------------------RKPSICEKMQLM 237 (409)
Q Consensus 213 -s~~eiy~~~~~~~------------------------------------------------------~~~ssrsh~i~~ 237 (409)
||+|||++.++|+ +..|||||++|+
T Consensus 140 vS~~EIYnE~i~DLL~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~ 219 (344)
T 4a14_A 140 VSYLEVYKEEFRDLLEVGTASRDIQLREDERGNVVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFT 219 (344)
T ss_dssp EEEEEEETTEEEETTSSCCCGGGCEEEECTTSCEEEESCCCEECCSHHHHHHHHHHHHHHHHC------CCGGGSEEEEE
T ss_pred EehhhhhHHHHHHHHHhccccccceeeeccCCCEEEEeeeeccccCHHHHHHHHHhcchhcccCcchhhhcccccceEEE
Confidence 9999999998887 234899999999
Q ss_pred EEEEeeccc--------cceeEEeEEEEeecCCcccccccCCccchhhhhcccchhHHHHHHHHHHHhcCC---CCcccC
Q psy4062 238 VYVKMQDKA--------TKQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLADGC---RHVPYR 306 (409)
Q Consensus 238 i~v~~~~~~--------~~~~~~skL~~VDLAGSEr~~~~~~~~~r~~E~~~IN~SL~aL~~vI~aL~~~~---~~iPyR 306 (409)
|++++.... ......++|+|||||||||..++++.|+|++|+.+||+||++|++||.+|++++ .|||||
T Consensus 220 i~v~~~~~~~~~~~~~~~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~hvPyR 299 (344)
T 4a14_A 220 VTLEQRGRAPSRLPRPAPGQLLVSKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQRRGSHIPYR 299 (344)
T ss_dssp EEEEEEC------------CEEEEEEEEEECCCCCCC--------------CCCSHHHHHHHHHHHHTCTTTTTSCCCGG
T ss_pred EEeeeCCCCcccCCCccccceeeeeeeEEecccchhhcccCCchhhhhhheeechhHHhhhhHHHhcCCccccCCCCCcc
Confidence 999987532 345678999999999999999999999999999999999999999999998754 699999
Q ss_pred CchhhHhhhhccCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHHh
Q psy4062 307 DSKLTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAK 351 (409)
Q Consensus 307 dSkLT~LLk~sLgGn~~t~~I~~isP~~~~~~eTl~TL~fa~rak 351 (409)
||||||||||+|||||+|+||+||||+..+++||++||+||+|||
T Consensus 300 dSkLT~lLqdsLgGnskt~mI~~vsP~~~~~~ETl~TL~fA~rAk 344 (344)
T 4a14_A 300 DSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344 (344)
T ss_dssp GCHHHHHTTTSSSTTSEEEEEEEECCBGGGHHHHHHHHHHHHHTC
T ss_pred hhhHHHHhHhhcCCCcceEEEEEeCCCccchhHHhhhhhhhhhcC
Confidence 999999999999999999999999999999999999999999996
No 17
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-74 Score=578.75 Aligned_cols=267 Identities=31% Similarity=0.542 Sum_probs=205.5
Q ss_pred CCCCCeEEEEEeCCCCChhhccCCceEEEE-eCCcEEEeCCCCCCCcceeeccccchhhccccCCCceeEeeceEeCCCC
Q psy4062 68 GEQSHMKVYIRVRPQSQKEEDGCHREIVKI-LNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKSKEMEFLFDRVYGPSE 146 (409)
Q Consensus 68 ~~~~~ikV~vRvRP~~~~E~~~~~~~~v~~-~~~~~ii~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~a 146 (409)
+.+++|||||||||+++.|.+ ++.. .+++++.+..+.+... ........++.|.||+||+ ++
T Consensus 21 ~~~~~i~V~vRvRP~~~~e~~-----~~~~~~~~~~v~~~~~~~~~~-----------~~~~~~~~~~~F~FD~Vf~-~~ 83 (359)
T 3nwn_A 21 GTRKKVHAFVRVKPTDDFAHE-----MIRYGDDKRSIDIHLKKDIRR-----------GVVNNQQTDWSFKLDGVLH-DA 83 (359)
T ss_dssp ---CCEEEEEEECCCSSCCTT-----TEEECTTSSEEEEECCCCSSH-----------HHHTTSCCEEEEECSEEEE-SC
T ss_pred CCCCCEEEEEEcCCCCccccc-----ceeecCCCcEEEEecCCcccc-----------ccccCCcCceEeecCccCC-CC
Confidence 447899999999999876532 2333 3444554444333211 1111234567899999997 68
Q ss_pred CchhhhccchHHHHHHHhcCcceEEEeeccCCCCceeeecCCCC---CCchhhhhhhhhhHHHhhhhce--------eEE
Q psy4062 147 SNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGNEN---HKGIMYLTMGIRNRVSALTRQM--------CTM 215 (409)
Q Consensus 147 sQ~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G~~~---~~GIi~~~~~~~~lf~~~~~~~--------s~~ 215 (409)
+|++||+.+++|+|+++|+|||+||||||||||||||||+|+.. ++|||||++.+ +|+.+.... ||+
T Consensus 84 sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~Giipra~~~--lF~~~~~~~~~~~~v~vS~~ 161 (359)
T 3nwn_A 84 SQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQ--VFRMIEERPTHAITVRVSYL 161 (359)
T ss_dssp CHHHHHHHHTHHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHH--HHHHHHTCTTSCEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEEeCCCCCCccEEeCCccCCccchhhHHHHHHH--HHHHhhcCCCCcEEEEEEEE
Confidence 99999999999999999999999999999999999999999754 47999999999 998876543 999
Q ss_pred EEEeceeeEe---------------------------------------------------------ecCcccceeeEEE
Q psy4062 216 RMYKTCLILR---------------------------------------------------------RKPSICEKMQLMV 238 (409)
Q Consensus 216 eiy~~~~~~~---------------------------------------------------------~~~ssrsh~i~~i 238 (409)
|||++.++|+ +..|+|||++|+|
T Consensus 162 EIYnE~i~DLL~~~~~~~~~~~~~~~~~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i 241 (359)
T 3nwn_A 162 EIYNESLFDLLSTLPYVGPSVTPMTIVENPQGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTI 241 (359)
T ss_dssp EEETTEEEETTSSSTTSCTTTSCCEEEEETTEEEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEE
T ss_pred EEeccccccccccccccccccccceEEecCCceEEeccEEEEecCHHHHHHHHHhhhhhcccccccCccccCcceEEEEE
Confidence 9999998887 2348999999999
Q ss_pred EEEeeccc--cceeEEeEEEEeecCCcccccccCCccchhhhhcccchhHHHHHHHHHHHhcCC-CCcccCCchhhHhhh
Q psy4062 239 YVKMQDKA--TKQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLADGC-RHVPYRDSKLTRILK 315 (409)
Q Consensus 239 ~v~~~~~~--~~~~~~skL~~VDLAGSEr~~~~~~~~~r~~E~~~IN~SL~aL~~vI~aL~~~~-~~iPyRdSkLT~LLk 315 (409)
++...... ......++|+|||||||||..++++.|+|++|+.+||+||++|++||.||++++ .||||||||||||||
T Consensus 242 ~i~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~~Lg~vI~aL~~~~~~hVPYRdSkLT~lLq 321 (359)
T 3nwn_A 242 YLEAHSRTLSEEKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHALK 321 (359)
T ss_dssp EEEEC-------CCEEEEEEEEECCCCC----------------CCSTHHHHHHHHHHHHHC-----CCGGGSHHHHHTH
T ss_pred EEEeecccccCcccccccceeeeccccccccccCCchhHHHhhhhhcccHHHHHHHHHHHHhcCCCcCCcccCHHHHHHH
Confidence 99876543 445678999999999999999999999999999999999999999999999765 799999999999999
Q ss_pred hccCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHHhcC
Q psy4062 316 DSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKI 353 (409)
Q Consensus 316 ~sLgGn~~t~~I~~isP~~~~~~eTl~TL~fa~rak~I 353 (409)
|+|||||+|+||+||||+..+++||++||+||+|||+|
T Consensus 322 dsLgGnskt~mI~~isP~~~~~~ETlsTL~fA~rak~I 359 (359)
T 3nwn_A 322 DSLGGNCNMVLVTNIYGEAAQLEETLSSLRFASRMKLV 359 (359)
T ss_dssp HHHSSSSEEEEEEEECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred HhcCCCccEEEEEEeCCchhhHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999987
No 18
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=100.00 E-value=2.1e-74 Score=576.69 Aligned_cols=267 Identities=34% Similarity=0.543 Sum_probs=223.3
Q ss_pred CCeEEEEEeCCCCChhhccCCceEEEEeCCcEEEeCCCCCCCcceeeccccchhhccccCCCceeEeeceEe--------
Q psy4062 71 SHMKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKSKEMEFLFDRVY-------- 142 (409)
Q Consensus 71 ~~ikV~vRvRP~~~~E~~~~~~~~v~~~~~~~ii~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~VF-------- 142 (409)
++|+|+|||||++++|...+...++.+.++++++ .++..... ........+.|.||+||
T Consensus 1 S~VkV~vRvRPl~~~E~~~~~~~vv~~~~~~~~~-~~~~~~~~------------~~~~~~~~k~F~FD~vF~~~d~~~~ 67 (354)
T 3gbj_A 1 SKVKVAVRIRPMNRRETDLHTKCVVDVDANKVIL-NPVNTNLS------------KGDARGQPKVFAYDHCFWSMDESVK 67 (354)
T ss_dssp -CEEEEEEECCCCHHHHHHTCCBCEEEETTEEEE-CCC-----------------------CCEEEECSEEEECSCTTCT
T ss_pred CCcEEEEECCCCChhhhccCCceEEEeCCCeEEE-eCCccccc------------cccccCCceEEEeeEEeccCccccc
Confidence 3799999999999999888888888888776655 44332111 00113456789999999
Q ss_pred CCCCCchhhhccchHHHHHHHhcCcceEEEeeccCCCCceeeecCCCCCCchhhhhhhhhhHHHhhhhc----------e
Q psy4062 143 GPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGNENHKGIMYLTMGIRNRVSALTRQ----------M 212 (409)
Q Consensus 143 ~~~asQ~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G~~~~~GIi~~~~~~~~lf~~~~~~----------~ 212 (409)
++.++|++||+.++.|+|+++|+|||+||||||||||||||||+|+++++|||||++.+ +|..+... .
T Consensus 68 ~~~a~Q~~vy~~~~~~lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~--lF~~i~~~~~~~~~~~v~v 145 (354)
T 3gbj_A 68 EKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQPGLIPRLCSG--LFERTQKEENEEQSFKVEV 145 (354)
T ss_dssp TTBCCHHHHHHHHHHHHHHHHHTTCCEEEEEEECTTSSHHHHHTBCSSSBCHHHHHHHH--HHHHHHHHCBTTEEEEEEE
T ss_pred cccccHHHHHHHhhHHHHHHHhCCceeEEEeeCCCCCCCceEEecCCCCCchhhHHHHH--HHHHHHhhcccccceeeec
Confidence 45689999999999999999999999999999999999999999999999999999999 99887532 2
Q ss_pred eEEEEEeceeeEe------------------------------------------------------ecCcccceeeEEE
Q psy4062 213 CTMRMYKTCLILR------------------------------------------------------RKPSICEKMQLMV 238 (409)
Q Consensus 213 s~~eiy~~~~~~~------------------------------------------------------~~~ssrsh~i~~i 238 (409)
||+|||++.++|+ +..|||||++|+|
T Consensus 146 S~~EIYnE~i~DLL~~~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i 225 (354)
T 3gbj_A 146 SYMEIYNEKVRDLLDPKGSRQTLKVREHSVLGPYVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKI 225 (354)
T ss_dssp EEEEEETTEEEETTC------CBCBC------CCBTTCCCEEECSHHHHHHHHHHHHHCC----------CTTSEEEEEE
T ss_pred eeEEEecCeeeEccCCCCCCcceEEEEcCCCCEEEEeeEEEecCCHHHHHHHHHHHHhcCCeeecCCCCCCCcccEEEEE
Confidence 8999999998886 2348999999999
Q ss_pred EEEeecc----ccceeEEeEEEEeecCCcccccccCCccchhhhhcccchhHHHHHHHHHHHhcC------CCCcccCCc
Q psy4062 239 YVKMQDK----ATKQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLADG------CRHVPYRDS 308 (409)
Q Consensus 239 ~v~~~~~----~~~~~~~skL~~VDLAGSEr~~~~~~~~~r~~E~~~IN~SL~aL~~vI~aL~~~------~~~iPyRdS 308 (409)
.+.+... .......++|+|||||||||..++++.|+|++|+.+||+||++||+||.+|++. ..|||||||
T Consensus 226 ~v~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~~~~hvPyRdS 305 (354)
T 3gbj_A 226 TLTHTLYDVKSGTSGEKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKNKNKFVPYRDS 305 (354)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEEEECCCCCCCCCCC------CHHHHHHHHHHHHHHHHHHHHHC------CCCCCGGGS
T ss_pred EEEEEecccCCCCCCeeEEEEEEEECCCCCchhhcCCccccchhHHHhhHHHHHHHHHHHHHHhhhcccCCCCccccccc
Confidence 9987532 234567899999999999999999999999999999999999999999999863 479999999
Q ss_pred hhhHhhhhccCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHHhc
Q psy4062 309 KLTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKK 352 (409)
Q Consensus 309 kLT~LLk~sLgGn~~t~~I~~isP~~~~~~eTl~TL~fa~rak~ 352 (409)
|||+||||+|||||+|+||+||||+..+|+||++||+||+||+.
T Consensus 306 kLT~lLqdsLgGnskt~mIa~vsP~~~~~~ETlsTLr~a~~~~~ 349 (354)
T 3gbj_A 306 VLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRYADRAKH 349 (354)
T ss_dssp HHHHHTHHHHSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhCCCCeEEEEEEeCCCcchHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999985
No 19
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=100.00 E-value=2.7e-74 Score=578.98 Aligned_cols=281 Identities=27% Similarity=0.415 Sum_probs=203.9
Q ss_pred ccccccccccccccCCCCCCCeEEEEEeCCCCChhhccCCceEEE-------EeCCcEEEeCCCCCCCcceeeccccchh
Q psy4062 52 GCHSVMTTLELGIIHTGEQSHMKVYIRVRPQSQKEEDGCHREIVK-------ILNRDTIIFDPKQDDSEFFFHGVKQSLR 124 (409)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~ikV~vRvRP~~~~E~~~~~~~~v~-------~~~~~~ii~dp~~~~~~~~~~~~~~~~~ 124 (409)
.+|+.++.+ +++|+|+|||||+++.|...+...+.. ..+++++.+..+...... ..+
T Consensus 12 ~~hn~~~~~---------~~~irV~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~------ 75 (376)
T 2rep_A 12 SGLVPRGSL---------KGNIRVFCRVRPVLPGEPTPPPGLLLFPSGPGGPSDPPTRLSLSRSDERRGT-LSG------ 75 (376)
T ss_dssp --------------------CEEEEEEECCCCTTSCCCCGGGSBCCC------CCCCEEECCC-----------------
T ss_pred cccchhhcc---------CCCeEEEEEcCCCChhhcccCCceEEEccCcccccCCCcEEEEecCCccccc-ccc------
Confidence 467777766 689999999999999997654322211 134455555433221110 000
Q ss_pred hccccCCCceeEeeceEeCCCCCchhhhccchHHHHHHHhcCcceEEEeeccCCCCceeeecCCCC----CCchhhhhhh
Q psy4062 125 DINKKKSKEMEFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGNEN----HKGIMYLTMG 200 (409)
Q Consensus 125 ~~~~~~~~~~~F~FD~VF~~~asQ~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G~~~----~~GIi~~~~~ 200 (409)
.....+.+.|.||+||+++++|++||+.+ .|+|+++|+|||+||||||||||||||||+|++. ++|||||++.
T Consensus 76 --~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~v-~~lv~~~l~G~N~tifAYGqTGSGKTyTM~G~~~~~~~~~Giipr~~~ 152 (376)
T 2rep_A 76 --APAPPPRHDFSFDRVFPPGSGQDEVFEEI-AMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDPQLEGLIPRALR 152 (376)
T ss_dssp ---------CEEECSEEECTTCCHHHHHHHH-HHHHHGGGGTCCEEEEEECSTTSSHHHHHTBCSSCCGGGBCHHHHHHH
T ss_pred --ccCCCCceeeeecEEcCCcccchhhhhhH-HHHHHHhcCCCceEEEEeCCCCCCCceEeecCCCCCcccCCcHHHHHH
Confidence 00123456899999999999999999985 6999999999999999999999999999999753 6899999999
Q ss_pred hhhHHHhhhhc----------eeEEEEEeceeeEe---------------------------------------------
Q psy4062 201 IRNRVSALTRQ----------MCTMRMYKTCLILR--------------------------------------------- 225 (409)
Q Consensus 201 ~~~lf~~~~~~----------~s~~eiy~~~~~~~--------------------------------------------- 225 (409)
+ +|..+... .||+|||++.++|+
T Consensus 153 ~--lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~~~l~ir~~~~~~~~~~v~gl~~~~V~s~~e~~~ll 230 (376)
T 2rep_A 153 H--LFSVAQELSGQGWTYSFVASYVEIYNETVRDLLATGTRKGQGGECEIRRAGPGSEELTVTNARYVPVSCEKEVDALL 230 (376)
T ss_dssp H--HHHHHHHGGGGTEEEEEEEEEEEEETTEEEETTCCC--------CCEEEC---CCCEEETTCCCEEECSHHHHHHHH
T ss_pred H--HHHHHHHhhcCCeEEEEEEEEEEEECCEeeEccccccccccCCCceEEeccCCCCCEEECCcEEEEeCCHHHHHHHH
Confidence 9 99887642 28999999887775
Q ss_pred --------------ecCcccceeeEEEEEEeeccccceeEEeEEEEeecCCcccccccCCcc----chhhhhcccchhHH
Q psy4062 226 --------------RKPSICEKMQLMVYVKMQDKATKQMKMVKLSMIDLAGSERAAANSSNQ----MRFKEGSNINKSLL 287 (409)
Q Consensus 226 --------------~~~ssrsh~i~~i~v~~~~~~~~~~~~skL~~VDLAGSEr~~~~~~~~----~r~~E~~~IN~SL~ 287 (409)
+..|||||++|+|.+...+........++|+|||||||||..++++.| +|++|+.+||+||+
T Consensus 231 ~~g~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~~~~~rlkE~~~INkSL~ 310 (376)
T 2rep_A 231 HLARQNRAVARTAQNERSSRSHSVFQLQISGEHSSRGLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLS 310 (376)
T ss_dssp HHHHHHHHHCC-----CGGGSEEEEEEEEEEEESSSCCEEEEEEEEEECCCCC------------------------CHH
T ss_pred HHHHhhcccccccCCCCCCCceEEEEEEEEEEecCCCcEEEeEEEEEECCCCcccccccccCccccchhhHHhHhhHHHH
Confidence 224899999999999988877777788999999999999999999999 99999999999999
Q ss_pred HHHHHHHHHhcCCCCcccCCchhhHhhhhccCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHHhcC
Q psy4062 288 ALGNCINSLADGCRHVPYRDSKLTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKI 353 (409)
Q Consensus 288 aL~~vI~aL~~~~~~iPyRdSkLT~LLk~sLgGn~~t~~I~~isP~~~~~~eTl~TL~fa~rak~I 353 (409)
+|++||.||++++.|||||||||||||||+|||||+|+||+||||+..+++||++||+||+|++++
T Consensus 311 aLg~vI~aL~~~~~hVPYRdSkLT~LLqdsLgGnskT~mIa~isP~~~~~~ETlsTLrfA~Rv~~~ 376 (376)
T 2rep_A 311 TLGLVIMALSNKESHVPYRNSKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASKVNQC 376 (376)
T ss_dssp HHHHHHHHHHTTCSCCCGGGSHHHHHTGGGTSTTCEEEEEEEECCCGGGHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHhcCCCccCCcCCHHHHHHHHhhCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999863
No 20
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=100.00 E-value=9.1e-74 Score=571.30 Aligned_cols=264 Identities=30% Similarity=0.516 Sum_probs=220.3
Q ss_pred CCCeEEEEEeCCCCChhhccCCceEEEEeCC----cEEEeCCCCCCCcceeeccccchhhccccCCCceeEeeceEeCCC
Q psy4062 70 QSHMKVYIRVRPQSQKEEDGCHREIVKILNR----DTIIFDPKQDDSEFFFHGVKQSLRDINKKKSKEMEFLFDRVYGPS 145 (409)
Q Consensus 70 ~~~ikV~vRvRP~~~~E~~~~~~~~v~~~~~----~~ii~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~ 145 (409)
+++|+|||||||+++.|...+...++...++ ..+.+.... .....+.|.||+||+++
T Consensus 4 kgnIrV~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~f~FD~Vf~~~ 64 (349)
T 3t0q_A 4 RGNIRVYCRVRPPLLNEPQDMSHILIEKFNEAKGAQSLTINRNE-------------------GRILSYNFQFDMIFEPS 64 (349)
T ss_dssp -CEEEEEEEECCCCTTSCCCCTTEEECCCBC--CBEEEEEEECC---------------------CEEEEEEESEEECTT
T ss_pred CCCcEEEEEeCCCCccccccCceEEEeeccCCCCceEEEEcCCC-------------------CcccceeeecCEEECCC
Confidence 6899999999999999876655544433221 122221111 12345689999999999
Q ss_pred CCchhhhccchHHHHHHHhcCcceEEEeeccCCCCceeeecCCCCCCchhhhhhhhhhHHHhhhhce----------eEE
Q psy4062 146 ESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGNENHKGIMYLTMGIRNRVSALTRQM----------CTM 215 (409)
Q Consensus 146 asQ~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G~~~~~GIi~~~~~~~~lf~~~~~~~----------s~~ 215 (409)
++|++||+. +.|+|+++|+|||+||||||||||||||||+|+ ++|||||++.+ +|..+.... ||+
T Consensus 65 ~~Q~~vf~~-v~~lv~~~l~G~n~tifAYGqTGSGKTyTm~g~--~~Giipr~~~~--lF~~~~~~~~~~~~~~v~vS~~ 139 (349)
T 3t0q_A 65 HTNKEIFEE-IRQLVQSSLDGYNVCIFAYGQTGSGKTYTMLNA--GDGMIPMTLSH--IFKWTANLKERGWNYEMECEYI 139 (349)
T ss_dssp CCHHHHHHH-HHHHHHGGGTTCEEEEEEECSTTSSHHHHHHST--TTSHHHHHHHH--HHHHHHHHGGGTEEEEEEEEEE
T ss_pred ccHHHHHHH-HHHHHHHHHCCcceeEEEeCCCCCCCceEeCCC--CCchhhHHHHH--HHHHHHHhhhcCceeEEEEEEE
Confidence 999999997 579999999999999999999999999999996 45999999999 998776421 999
Q ss_pred EEEeceeeEe----------------------------------------------------------------ecCccc
Q psy4062 216 RMYKTCLILR----------------------------------------------------------------RKPSIC 231 (409)
Q Consensus 216 eiy~~~~~~~----------------------------------------------------------------~~~ssr 231 (409)
|||++.++|+ +..|||
T Consensus 140 EIYnE~i~DLL~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSR 219 (349)
T 3t0q_A 140 EIYNETILDLLRDFKSHDNIDEILDSQKHDIRHDHEKQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSR 219 (349)
T ss_dssp EEETTEEEETTC---------------CCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHC------------CTGGG
T ss_pred EEEcchhhccccccccccccccccccccceeEEecCCCCEEEeCCEEEEeCCHHHHHHHHHHHHHhCcccccccccccCC
Confidence 9998877765 234899
Q ss_pred ceeeEEEEEEeeccccceeEEeEEEEeecCCcccccccCCccchhhhhcccchhHHHHHHHHHHHhcCC---CCcccCCc
Q psy4062 232 EKMQLMVYVKMQDKATKQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLADGC---RHVPYRDS 308 (409)
Q Consensus 232 sh~i~~i~v~~~~~~~~~~~~skL~~VDLAGSEr~~~~~~~~~r~~E~~~IN~SL~aL~~vI~aL~~~~---~~iPyRdS 308 (409)
||++|++++.+.+........++|+|||||||||..++++.|+|++|+.+||+||++||+||.||++++ .|||||||
T Consensus 220 SH~if~i~v~~~~~~~~~~~~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdS 299 (349)
T 3t0q_A 220 SHSVFMVHINGRNLHTGETSQGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDAGKRYIPFRNS 299 (349)
T ss_dssp SEEEEEEEEEEEETTTCCEEEEEEEEEECCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCCCGGGS
T ss_pred cceEEEEEEEEEecCCCCeeEEEEEEEeCCCCCccccccCccccchhHHhhhHhHHHHHHHHHHHhcccCCCCcCCCcCC
Confidence 999999999998887777889999999999999999999999999999999999999999999998876 49999999
Q ss_pred hhhHhhhhccCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHHhcCcccc
Q psy4062 309 KLTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKIKAKV 357 (409)
Q Consensus 309 kLT~LLk~sLgGn~~t~~I~~isP~~~~~~eTl~TL~fa~rak~Ik~~~ 357 (409)
||||||||+|||||+|+||+||||+..+++||++||+||+|+++||..+
T Consensus 300 kLT~lLqdsLgGnskt~mi~~vsP~~~~~~ETl~TL~fA~rv~~ik~~~ 348 (349)
T 3t0q_A 300 KLTYLLQYSLVGDSKTLMFVNIPPDPNHISETLNSLRFASKVNSTKIAK 348 (349)
T ss_dssp HHHHHHGGGSSTTCEEEEEEEECCCGGGHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHhhhcccCC
Confidence 9999999999999999999999999999999999999999999998754
No 21
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=100.00 E-value=8.5e-74 Score=576.04 Aligned_cols=268 Identities=32% Similarity=0.501 Sum_probs=215.5
Q ss_pred CCCCeEEEEEeCCCCChhhccCCceEEEEeCCcEEEeCCCCCCCcceeeccccchhhccccCCCceeEeeceEeCCCCCc
Q psy4062 69 EQSHMKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKSKEMEFLFDRVYGPSESN 148 (409)
Q Consensus 69 ~~~~ikV~vRvRP~~~~E~~~~~~~~v~~~~~~~ii~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~asQ 148 (409)
+.++|+|+|||||+++.|...+...+|.+.++.++++..+..... . .+....+.|.||+||+++++|
T Consensus 49 ~~~~I~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~v~~~~~~~~------------~-~~~~~~~~F~FD~VF~~~~sQ 115 (387)
T 2heh_A 49 EEHRICVCVRKRPLNKQELAKKEIDVISIPSKCLLLVHEPKLKVD------------L-TKYLENQAFCFDFAFDETASN 115 (387)
T ss_dssp CCCSEEEEEEECCCCHHHHHTTCCBCEECCBSSEEEEEEEEECTT------------C-CEEEEEEEEECSEEECTTCCH
T ss_pred CCCCeEEEEECCCCChHHhccCCceEEEECCCCEEEEeCCCcccc------------c-cccccccEEeeeEEEecCCCc
Confidence 478999999999999999888888888888776665432221110 0 001234689999999999999
Q ss_pred hhhhccchHHHHHHHhcCcceEEEeeccCCCCceeeecCC------CCCCchhhhhhhhhhHHHhhhhc----------e
Q psy4062 149 QDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGN------ENHKGIMYLTMGIRNRVSALTRQ----------M 212 (409)
Q Consensus 149 ~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G~------~~~~GIi~~~~~~~~lf~~~~~~----------~ 212 (409)
++||+.+++|+|+++|+|||+||||||||||||||||+|+ ..++||+|+++.+ +|..+... .
T Consensus 116 ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipr~~~~--lF~~~~~~~~~~~~~~V~v 193 (387)
T 2heh_A 116 EVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIYAMASRD--VFLLKNQPCYRKLGLEVYV 193 (387)
T ss_dssp HHHHHHTTHHHHHHHHTTCEEEEEEESCTTSSHHHHHC-----------CCHHHHHHHH--HHHHHTSHHHHTTTCEEEE
T ss_pred eeehhhhHHHHHHHHhcCCceEEEEecCCCCCCCeEeccCCCCCCcccCCceehhhHHH--HHHHhhcccccCceEEEEE
Confidence 9999999999999999999999999999999999999996 3578999999999 99877542 2
Q ss_pred eEEEEEeceeeEe---------------------------------------------------ecCcccceeeEEEEEE
Q psy4062 213 CTMRMYKTCLILR---------------------------------------------------RKPSICEKMQLMVYVK 241 (409)
Q Consensus 213 s~~eiy~~~~~~~---------------------------------------------------~~~ssrsh~i~~i~v~ 241 (409)
||+|||++.++|+ +..|||||++|+|.+.
T Consensus 194 S~~EIYnE~v~DLL~~~~~l~i~ed~~~~v~v~gl~~~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~ 273 (387)
T 2heh_A 194 TFFEIYNGKLFDLLNKKAKLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILR 273 (387)
T ss_dssp EEEEEETTEEEETTTTTEECEEEECTTCCEEEETCCCEEESSHHHHHHHHHHHHHHC---------CGGGSEEEEEEEEE
T ss_pred EEEEecCCeEEECCCCCccceEEEcCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhCCcccCcCcCCcccceEEEEEEEE
Confidence 9999999998886 2358999999999998
Q ss_pred eeccccceeEEeEEEEeecCCcccccccC-CccchhhhhcccchhHHHHHHHHHHHhcCCCCcccCCchhhHhhhhc-cC
Q psy4062 242 MQDKATKQMKMVKLSMIDLAGSERAAANS-SNQMRFKEGSNINKSLLALGNCINSLADGCRHVPYRDSKLTRILKDS-LG 319 (409)
Q Consensus 242 ~~~~~~~~~~~skL~~VDLAGSEr~~~~~-~~~~r~~E~~~IN~SL~aL~~vI~aL~~~~~~iPyRdSkLT~LLk~s-Lg 319 (409)
... ...++|+|||||||||..+++ ..+.+++|+.+||+||++|++||.||++++.|||||||||||||||+ ||
T Consensus 274 ~~~-----~~~skL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~~hvPYRdSKLTrlLqdsllG 348 (387)
T 2heh_A 274 AKG-----RMHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIG 348 (387)
T ss_dssp SSS-----SEEEEEEEEECCCCC---------------CHHHHHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTGGGGSS
T ss_pred ECC-----eeeeEEEEEECCCCccccccccccccchhhHHHHhHHHHHHHHHHHHHhcCCCCCCccccHHHHHHhhhccC
Confidence 653 357999999999999998876 46678899999999999999999999999999999999999999999 59
Q ss_pred CCccEEEEEEeCCCCCCHHHHHHHHHHHHHHhcCccc
Q psy4062 320 GNCKTVMIANIAPTALSYEDSYNTLKYATRAKKIKAK 356 (409)
Q Consensus 320 Gn~~t~~I~~isP~~~~~~eTl~TL~fa~rak~Ik~~ 356 (409)
|||+|+||+||||+..+++||++||+||+|||+|++.
T Consensus 349 gnskT~mIa~isP~~~~~~ETlsTLrfA~rak~I~~~ 385 (387)
T 2heh_A 349 ENSRTCMIATISPGISSCEYTLNTLRYADRVKELSPH 385 (387)
T ss_dssp TTEEEEEEEEECCBGGGHHHHHHHHHHHHHHCC----
T ss_pred CCCeEEEEEEeCCccchHHHHHHHHHHHHHhccCcCC
Confidence 9999999999999999999999999999999999875
No 22
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=100.00 E-value=1.8e-73 Score=568.57 Aligned_cols=269 Identities=29% Similarity=0.504 Sum_probs=222.1
Q ss_pred CCCeEEEEEeCCCCC-hhhccCCceEEEEeCCcEEEeCCCCCCCcceeeccccchhhccccCCCceeEeeceEeCCCCCc
Q psy4062 70 QSHMKVYIRVRPQSQ-KEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKSKEMEFLFDRVYGPSESN 148 (409)
Q Consensus 70 ~~~ikV~vRvRP~~~-~E~~~~~~~~v~~~~~~~ii~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~asQ 148 (409)
+++|+|+|||||+++ .|. ....++.+... +.........+... ......+.|.||+||+++++|
T Consensus 2 k~nIrV~vRvRP~~~~~e~--~~~~~~~v~~~-----~~~~~~~~~~~~~~--------~~~~~~~~f~FD~Vf~~~~~Q 66 (347)
T 1f9v_A 2 RGNIRVYCRIRPALKNLEN--SDTSLINVNEF-----DDNSGVQSMEVTKI--------QNTAQVHEFKFDKIFDQQDTN 66 (347)
T ss_dssp -CEEEEEEEECCCCTTTCC--CTTEEEEECCC-----BTTTTBEEEEEEEG--------GGTTCEEEEEESEEECTTCCH
T ss_pred CCCeEEEEEeCCCCccccc--CCCceEEEecc-----cCCCCceEEEEecC--------CCCcCceEEeeCEEECCCCCH
Confidence 578999999999987 332 22333433210 00000000000000 012345789999999999999
Q ss_pred hhhhccchHHHHHHHhcCcceEEEeeccCCCCceeeecCCCCCCchhhhhhhhhhHHHhhhhc----------eeEEEEE
Q psy4062 149 QDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGNENHKGIMYLTMGIRNRVSALTRQ----------MCTMRMY 218 (409)
Q Consensus 149 ~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G~~~~~GIi~~~~~~~~lf~~~~~~----------~s~~eiy 218 (409)
++||+. +.|+|+++|+|||+||||||||||||||||+|. ++|||||++.+ +|..+... .||+|||
T Consensus 67 ~~Vy~~-v~~lv~~~l~G~n~tifAYGqTGSGKTyTM~G~--~~Giipr~~~~--lF~~i~~~~~~~~~~~v~vS~~EIY 141 (347)
T 1f9v_A 67 VDVFKE-VGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNP--GDGIIPSTISH--IFNWINKLKTKGWDYKVNCEFIEIY 141 (347)
T ss_dssp HHHHHH-HHHHHGGGGGTCCEEEEEECCTTSSHHHHHHST--TTSHHHHHHHH--HHHHHHHHGGGTCEEEEEEEEEEEE
T ss_pred HHHHHH-HHHHHHHhcCCceeEEEEECCCCCCCcEeccCC--CCCchHHHHHH--HHHHHHhhhhcCCceEEEEEEEEEE
Confidence 999998 579999999999999999999999999999996 46999999999 99887642 1899999
Q ss_pred eceeeEe--------------------------------------------------------------ecCcccceeeE
Q psy4062 219 KTCLILR--------------------------------------------------------------RKPSICEKMQL 236 (409)
Q Consensus 219 ~~~~~~~--------------------------------------------------------------~~~ssrsh~i~ 236 (409)
++.++|+ +..|||||++|
T Consensus 142 nE~i~DLL~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if 221 (347)
T 1f9v_A 142 NENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIF 221 (347)
T ss_dssp TTEEEETTC-------------CCCEEEETTTTEEEETTCCCEECSSGGGHHHHHHHHC-----------CCGGGSEEEE
T ss_pred CCeeeeccCCccccccccccCCceeEEEecCCCceEecCCEEEEcCCHHHHHHHHHHHHhccceeeccCCCCCCCceEEE
Confidence 8887765 23489999999
Q ss_pred EEEEEeeccccceeEEeEEEEeecCCcccccccCCccchhhhhcccchhHHHHHHHHHHHhcCC---CCcccCCchhhHh
Q psy4062 237 MVYVKMQDKATKQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLADGC---RHVPYRDSKLTRI 313 (409)
Q Consensus 237 ~i~v~~~~~~~~~~~~skL~~VDLAGSEr~~~~~~~~~r~~E~~~IN~SL~aL~~vI~aL~~~~---~~iPyRdSkLT~L 313 (409)
+|++.+.+........++|+|||||||||..++++.|+|++|+.+||+||++|++||.+|++++ .||||||||||+|
T Consensus 222 ~i~v~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~l 301 (347)
T 1f9v_A 222 IIHLSGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYL 301 (347)
T ss_dssp EEEEEEECC--CCEEEEEEEEEECCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHTSCC---CCCCGGGSHHHHH
T ss_pred EEEEEEecCCCCceeeeEEEEEECCCCccccccccchhhhHHHHHHhHHHHHHHHHHHHHhcccCCCCcCccccCHHHHH
Confidence 9999988777777789999999999999999999999999999999999999999999999876 8999999999999
Q ss_pred hhhccCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHHhcCcccce
Q psy4062 314 LKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKIKAKVS 358 (409)
Q Consensus 314 Lk~sLgGn~~t~~I~~isP~~~~~~eTl~TL~fa~rak~Ik~~~~ 358 (409)
|||+|||||+|+||+||||+..+++||++||+||+||++|+..++
T Consensus 302 LqdsLgGnskt~mI~~vsP~~~~~~ETl~TLrfA~r~~~i~~~~r 346 (347)
T 1f9v_A 302 LQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRLVSR 346 (347)
T ss_dssp HHHHHSTTCEEEEEEEECCSGGGHHHHHHHHHHHHHHCCTTTC--
T ss_pred HHHHhCCCccEEEEEEeCCccccHHHHHHHHHHHHHHhhhccCCC
Confidence 999999999999999999999999999999999999999998764
No 23
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=100.00 E-value=2.3e-73 Score=578.43 Aligned_cols=280 Identities=29% Similarity=0.463 Sum_probs=227.9
Q ss_pred ccccccccccccccCCCCCCCeEEEEEeCCCCChhhccCCceEEEEeCCcEEEeCCCCCCCcceeeccccchhhccccCC
Q psy4062 52 GCHSVMTTLELGIIHTGEQSHMKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKS 131 (409)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~ikV~vRvRP~~~~E~~~~~~~~v~~~~~~~ii~dp~~~~~~~~~~~~~~~~~~~~~~~~ 131 (409)
.+|+.++.+ +++|+|||||||+.+.|.... ..++...++.++.+....... +...
T Consensus 49 ~l~n~~~~l---------~gnIrV~vRvRP~~~~E~~~~-~~~~~~~~~~~v~~~~~~~~~---------------~~~~ 103 (412)
T 3u06_A 49 ELHNTVMDL---------RDNIRVFCRIRPPLESEENRM-CCTWTYHDESTVELQSIDAQA---------------KSKM 103 (412)
T ss_dssp HHHHHHHHH---------TCSEEEEEEECCCCGGGTTSC-BCEEEEEETTEEEEECCC----------------------
T ss_pred HHHHHHHHh---------CCCEEEEEEcCCCCchhccCc-ceEEEecCCCEEEEecCCccc---------------cccc
Confidence 577777777 789999999999999886543 344555566666554332211 0122
Q ss_pred CceeEeeceEeCCCCCchhhhccchHHHHHHHhcCcceEEEeeccCCCCceeeecCCCCCCchhhhhhhhhhHHHhhhhc
Q psy4062 132 KEMEFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGNENHKGIMYLTMGIRNRVSALTRQ 211 (409)
Q Consensus 132 ~~~~F~FD~VF~~~asQ~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G~~~~~GIi~~~~~~~~lf~~~~~~ 211 (409)
..+.|.||+||+++++|++||+. +.|+|+++|+|||+||||||||||||||||+|.++++|||||++.+ +|..+...
T Consensus 104 ~~~~F~FD~VF~~~~~Q~~Vf~~-v~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~--lF~~i~~~ 180 (412)
T 3u06_A 104 GQQIFSFDQVFHPLSSQSDIFEM-VSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDL--LFDSIRGY 180 (412)
T ss_dssp CCCEEECSEEECTTCCHHHHHTT-THHHHHHHHTTCCEEEEEESSTTSSHHHHHTEETTEECHHHHHHHH--HHHHHHHH
T ss_pred CceEEeeCeEcCCCCCHHHHHHH-HHHHHHHHHCCCceEEEEecCCCCCCeeEecCCCCCCccHHHHHHH--HHHhhhhh
Confidence 35689999999999999999985 5799999999999999999999999999999999999999999999 99987642
Q ss_pred ----------eeEEEEEeceeeEe------------------------------------------------------ec
Q psy4062 212 ----------MCTMRMYKTCLILR------------------------------------------------------RK 227 (409)
Q Consensus 212 ----------~s~~eiy~~~~~~~------------------------------------------------------~~ 227 (409)
.||+|||++.++|+ +.
T Consensus 181 ~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~i~~~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~ 260 (412)
T 3u06_A 181 RNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNE 260 (412)
T ss_dssp GGGTEEEEEEEEEEEEETTEEEETTCCSCCCCCEEECSSCTTSEEETTCCCEECCSHHHHHHHHHHHHHHCC-----CHH
T ss_pred cccCceEEEEEEEEEEeCCeeEEcCCCCCCCceeeeeecCCCCEEEcceEEEEeCCHHHHHHHHHHHHhcccccccCCCC
Confidence 18999999988886 12
Q ss_pred CcccceeeEEEEEEeeccccceeEEeEEEEeecCCcccccccCCccchhhhhcccchhHHHHHHHHHHHhcCCCCcccCC
Q psy4062 228 PSICEKMQLMVYVKMQDKATKQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLADGCRHVPYRD 307 (409)
Q Consensus 228 ~ssrsh~i~~i~v~~~~~~~~~~~~skL~~VDLAGSEr~~~~~~~~~r~~E~~~IN~SL~aL~~vI~aL~~~~~~iPyRd 307 (409)
.|||||++|+|++...+........++|+|||||||||.. .+.|++|+.+||+||++||+||.||++++.||||||
T Consensus 261 ~SSRSH~if~i~v~~~~~~~~~~~~~kL~lVDLAGSEr~~----~~~rl~E~~~INkSL~aLg~vI~aL~~~~~hiPyRd 336 (412)
T 3u06_A 261 RSSRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSESPK----TSTRMTETKNINRSLSELTNVILALLQKQDHIPYRN 336 (412)
T ss_dssp HHTTCEEEEEEEEEEEETTTTEEEEEEEEEEECCCCCC--------------CTTTHHHHHHHHHHHHHHTTCSCCCGGG
T ss_pred CCcCceEEEEEEEEEEeCCCCCEEEEEEEEEECCCCCcCC----ccchhHhHHHHhHHHHHHHHHHHHHhccCCCCCccc
Confidence 3889999999999988887888889999999999999874 467999999999999999999999999999999999
Q ss_pred chhhHhhhhccCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHHhcCccc-ceeeccC
Q psy4062 308 SKLTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKIKAK-VSRTFKS 363 (409)
Q Consensus 308 SkLT~LLk~sLgGn~~t~~I~~isP~~~~~~eTl~TL~fa~rak~Ik~~-~~~n~~~ 363 (409)
||||+||||+|||||+|+||+||||+..+++||++||+||+|+++|+.. ++.|...
T Consensus 337 SkLT~LLqdsLgGnskt~mI~~vsP~~~~~~ETl~TLrfA~rv~~i~~~~~~~n~~~ 393 (412)
T 3u06_A 337 SKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRNRYL 393 (412)
T ss_dssp SHHHHHHGGGTSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHHHHHCC---------
T ss_pred cHHHHHHHHhcCCCceEEEEEEeCCChhhHHHHHHHHHHHHHHhhcccccccccccC
Confidence 9999999999999999999999999999999999999999999999954 4445433
No 24
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=100.00 E-value=1.5e-73 Score=567.76 Aligned_cols=256 Identities=26% Similarity=0.421 Sum_probs=205.8
Q ss_pred CCCCCCeEEEEEeCCCCChhhccCCceEEEEeC---CcEEEeCCCCCCCcceeeccccchhhccccCCCceeEeeceEeC
Q psy4062 67 TGEQSHMKVYIRVRPQSQKEEDGCHREIVKILN---RDTIIFDPKQDDSEFFFHGVKQSLRDINKKKSKEMEFLFDRVYG 143 (409)
Q Consensus 67 ~~~~~~ikV~vRvRP~~~~E~~~~~~~~v~~~~---~~~ii~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~VF~ 143 (409)
.++.++|||+|||||+++.|. .+...++.+.+ ++.+++ ..+.|.||+||+
T Consensus 18 ~~~~~~VrV~vRvRP~~~~e~-~~~~~~v~~~~~~~~~~~~~--------------------------~~~~F~FD~Vf~ 70 (344)
T 3dc4_A 18 GAKLSAVRIAVREAPYRQFLG-RREPSVVQFPPWSDGKSLIV--------------------------DQNEFHFDHAFP 70 (344)
T ss_dssp -CCCSEEEEEEEECCCC--------CCSEECCSSSCSSEEEE--------------------------TTEEEECSEEEC
T ss_pred CCCCCCeEEEEECCCCCcccc-cCCceEEEecCCCCCceEEe--------------------------cCcEEEcceEEC
Confidence 456789999999999988763 23344444322 112211 235799999999
Q ss_pred CCCCchhhhccchHHHHHHHhcCcceEEEeeccCCCCceeeecCCC------CCCchhhhhhhhhhHHHhhhhce-----
Q psy4062 144 PSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGNE------NHKGIMYLTMGIRNRVSALTRQM----- 212 (409)
Q Consensus 144 ~~asQ~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G~~------~~~GIi~~~~~~~~lf~~~~~~~----- 212 (409)
++++|++||+.++.|+|+++|+|||+||||||||||||||||+|+. +++|||||++.+ +|+.+....
T Consensus 71 ~~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~g~~~~~~~~~~~GIipra~~~--LF~~i~~~~~~~~~ 148 (344)
T 3dc4_A 71 ATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILPEHLGILPRALGD--IFERVTARQENNKD 148 (344)
T ss_dssp TTCCHHHHHHHHTHHHHHHHHHTCCEEEEEESSTTSSHHHHHTCSCGGGSCGGGCCHHHHHHHH--HHHHHHHSSSSCSS
T ss_pred CCCCHHHHHHhhccchhhHhhCCCceEEEEecCCCCCCCeEEcCCCCCCCCcccCCcHHHHHHH--HHHHHHhhhhcccc
Confidence 9999999999999999999999999999999999999999999874 567999999999 999886432
Q ss_pred ------eEEEEEeceeeEe----------------------------------------------ecCcccceeeEEEEE
Q psy4062 213 ------CTMRMYKTCLILR----------------------------------------------RKPSICEKMQLMVYV 240 (409)
Q Consensus 213 ------s~~eiy~~~~~~~----------------------------------------------~~~ssrsh~i~~i~v 240 (409)
||+|||++.++|+ +..|||||++|+|++
T Consensus 149 ~~~v~vS~~EIYnE~i~DLL~~~~~~~~~~~~~~~~~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~Ifti~v 228 (344)
T 3dc4_A 149 AIQVYASFIEIYNEKPFDLLGSTPHMPMVAARCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHV 228 (344)
T ss_dssp CCEEEEEEEEEESSCEEETTSSCTTSBCCSSTTTCSCCEECSSHHHHHHHHHHHHHTCC----------CCEEEEEEEEE
T ss_pred ceEEEEEEEEEeCCeeEEccCCCCCCccccccccCceecccCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEE
Confidence 9999999999987 234899999999999
Q ss_pred EeeccccceeEEeEEEEeecCCcccccccCCccchhhhhcccchhHHHHHHHHHHHhcCCCCcccCCchhhHhhhhccCC
Q psy4062 241 KMQDKATKQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLADGCRHVPYRDSKLTRILKDSLGG 320 (409)
Q Consensus 241 ~~~~~~~~~~~~skL~~VDLAGSEr~~~~~~~~~r~~E~~~IN~SL~aL~~vI~aL~~~~~~iPyRdSkLT~LLk~sLgG 320 (409)
+... ..++|+|||||||||..++++.|++++|+.+||+||++|++||.+|++++.|||||||||||||||+|||
T Consensus 229 ~~~~------~~skl~lVDLAGSEr~~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~~~hiPyRdSkLT~lLqdsLgG 302 (344)
T 3dc4_A 229 KSKT------HHSRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGHTVIPYRDSVLTTVLQASLTA 302 (344)
T ss_dssp ECSS------CEEEEEEEECCCCCCC-------------CCSCCHHHHHHHHHHHHHTTCSSCCGGGSHHHHHTTTTSST
T ss_pred EecC------cEEEEEEEECCCCccccccccccchhHHHHHHhHhHHHHHHHHHHHhccCCcCCccccHHHHHHHHHhCC
Confidence 7532 4789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEEEeCCCCCCHHHHHHHHHHHHHHhcCcccc
Q psy4062 321 NCKTVMIANIAPTALSYEDSYNTLKYATRAKKIKAKV 357 (409)
Q Consensus 321 n~~t~~I~~isP~~~~~~eTl~TL~fa~rak~Ik~~~ 357 (409)
||+|+||+||||+..+++||++||+||+||++....+
T Consensus 303 nskt~mIa~isP~~~~~~ETlsTL~fA~ra~~~~~~~ 339 (344)
T 3dc4_A 303 QSYLTFLACISPHQCDLSETLSTLRFGTSAKAAALEH 339 (344)
T ss_dssp TCEEEEEEEECCCGGGHHHHHHHHHHHHHHHHHTTTC
T ss_pred CCEEEEEEEeCCchhhHHHHHHHHHHHHHHhhcCCCC
Confidence 9999999999999999999999999999999876554
No 25
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=100.00 E-value=3.1e-73 Score=575.29 Aligned_cols=270 Identities=31% Similarity=0.482 Sum_probs=217.6
Q ss_pred CCCCeEEEEEeCCCCChhhccCCceEEEEeCCcEEEeCCCCCCCcceeeccccchhhccccCCCceeEeeceEeCCCCCc
Q psy4062 69 EQSHMKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKSKEMEFLFDRVYGPSESN 148 (409)
Q Consensus 69 ~~~~ikV~vRvRP~~~~E~~~~~~~~v~~~~~~~ii~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~asQ 148 (409)
+.++|+|+|||||+++.|...+...+|.+.++.++++..+..... . .+....+.|.||+||+++++|
T Consensus 69 ~~~~I~V~vRvRPl~~~E~~~~~~~~v~~~~~~~v~v~~~~~~~~------------~-~~~~~~~~F~FD~VF~~~~tQ 135 (410)
T 1v8k_A 69 EEHRICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVD------------L-TKYLENQAFCFDFAFDETASN 135 (410)
T ss_dssp SCCCEEEEEEECCCCHHHHHTTCCBCEECCSSSEEEEEEEEECTT------------C-CEEEEEEEEECSEEECTTCCH
T ss_pred CCCCeEEEEEeCCCChhHhhcCCccEEEECCCCEEEEecCccccc------------c-cccccceEEeeeEEEecCCCh
Confidence 468999999999999999988888899888777665543221110 0 001234689999999999999
Q ss_pred hhhhccchHHHHHHHhcCcceEEEeeccCCCCceeeecCCC------CCCchhhhhhhhhhHHHhhhhc----------e
Q psy4062 149 QDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGNE------NHKGIMYLTMGIRNRVSALTRQ----------M 212 (409)
Q Consensus 149 ~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G~~------~~~GIi~~~~~~~~lf~~~~~~----------~ 212 (409)
++||+.++.|+|+++|+|||+||||||||||||||||+|+. .++||+|+++.+ +|..+... .
T Consensus 136 ~~Vy~~~~~plV~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipra~~~--lF~~~~~~~~~~~~~~V~v 213 (410)
T 1v8k_A 136 EVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRD--VFLLKNQPRYRNLNLEVYV 213 (410)
T ss_dssp HHHHHHTTHHHHHHHHTTCEEEEEEEESTTSSHHHHHHCBC----CBGGGSHHHHHHHH--HHHHHTSHHHHTTCCEEEE
T ss_pred hhhhHHHHHHHHHHHhcCCceeEEeecCCCCCCCeEeecCCCCCCccccCcchhhhHHH--HHHHHhhhcccCccEEEEE
Confidence 99999999999999999999999999999999999999963 468999999999 99877542 2
Q ss_pred eEEEEEeceeeEe---------------------------------------------------ecCcccceeeEEEEEE
Q psy4062 213 CTMRMYKTCLILR---------------------------------------------------RKPSICEKMQLMVYVK 241 (409)
Q Consensus 213 s~~eiy~~~~~~~---------------------------------------------------~~~ssrsh~i~~i~v~ 241 (409)
||+|||++.++|+ +..|||||++|+|++.
T Consensus 214 S~lEIYnE~i~DLL~~~~~l~i~ed~~~~v~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~ 293 (410)
T 1v8k_A 214 TFFEIYNGKVFDLLNKKAKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLR 293 (410)
T ss_dssp EEEEEETTEEEETTTTTEEEEEEECSSCCEEEETCCCEEESSHHHHHHHHHHHHHTCC--------CCCSSEEEEEEEEE
T ss_pred EEEEeeCCEEEECCCCCCCceEEECCCCCeEecCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCCCCceEEEEEEEE
Confidence 9999999998886 2358999999999998
Q ss_pred eeccccceeEEeEEEEeecCCcccccccC-CccchhhhhcccchhHHHHHHHHHHHhcCCCCcccCCchhhHhhhhc-cC
Q psy4062 242 MQDKATKQMKMVKLSMIDLAGSERAAANS-SNQMRFKEGSNINKSLLALGNCINSLADGCRHVPYRDSKLTRILKDS-LG 319 (409)
Q Consensus 242 ~~~~~~~~~~~skL~~VDLAGSEr~~~~~-~~~~r~~E~~~IN~SL~aL~~vI~aL~~~~~~iPyRdSkLT~LLk~s-Lg 319 (409)
... ...++|+|||||||||..+++ ..+.+++|+.+||+||++||+||.||+++..||||||||||+||||+ ||
T Consensus 294 ~~~-----~~~skL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~~hIPYRdSKLTrLLqdsllG 368 (410)
T 1v8k_A 294 TKG-----RLHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIG 368 (410)
T ss_dssp SSS-----SEEEEEEEEECCCCCC------------TTHHHHHHHHHHHHHHHHHHTC------CCCCHHHHHTTHHHHS
T ss_pred eCC-----cceeEEEEEECCCccccccccccccchhHHHHHHhHHHHHHHHHHHHHhcCCCCCCcccchhHHHHhhcccC
Confidence 653 357999999999999998876 46778899999999999999999999999999999999999999999 69
Q ss_pred CCccEEEEEEeCCCCCCHHHHHHHHHHHHHHhcCcccce
Q psy4062 320 GNCKTVMIANIAPTALSYEDSYNTLKYATRAKKIKAKVS 358 (409)
Q Consensus 320 Gn~~t~~I~~isP~~~~~~eTl~TL~fa~rak~Ik~~~~ 358 (409)
|||+|+||+||||+..+++||++||+||+|||+|-.+|.
T Consensus 369 gnskT~mIa~iSP~~~~~~ETlsTLrfA~rak~i~~~~~ 407 (410)
T 1v8k_A 369 ENSRTCMIAMISPGISSCEYTLNTLRYADRVKELSHHHH 407 (410)
T ss_dssp SSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTTC----
T ss_pred CCceEEEEEEeCCccccHHHHHHHHHHHHHhccCCCCCC
Confidence 999999999999999999999999999999999987764
No 26
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=100.00 E-value=1.3e-72 Score=563.82 Aligned_cols=269 Identities=31% Similarity=0.538 Sum_probs=204.7
Q ss_pred CCCCCCCeEEEEEeCCCCChhhccCCceEEEEe-CCcEEEeCCCCCCCcceeeccccchhhccccCCCceeEeeceEeCC
Q psy4062 66 HTGEQSHMKVYIRVRPQSQKEEDGCHREIVKIL-NRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKSKEMEFLFDRVYGP 144 (409)
Q Consensus 66 ~~~~~~~ikV~vRvRP~~~~E~~~~~~~~v~~~-~~~~ii~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~ 144 (409)
+.+..++|||||||||+.+.+. .++.+. +++.+.+..+.+.. ..........+.|.||+||+
T Consensus 18 ~~~~~g~IrV~vRvRP~~~~~~-----~~~~~~~~~~~v~i~~~~~~~-----------~~~~~~~~~~~~F~fD~Vf~- 80 (358)
T 2nr8_A 18 GSGTRKKVHAFVRVKPTDDFAH-----EMIRYGDDKRSIDIHLKKDIR-----------RGVVNNQQTDWSFKLDGVLH- 80 (358)
T ss_dssp -----CCEEEEEEECCCSSCCT-----TTEEECTTSSEEEEECCCCSS-----------HHHHTTSCCEEEEECSEEEE-
T ss_pred CCCCCCCeEEEEEcCCCCCCcc-----ceeEECCCCCEEEEecCCccc-----------cccccCCCcceEEECCeecC-
Confidence 4566899999999999876432 234443 33444333332211 11111234567899999995
Q ss_pred CCCchhhhccchHHHHHHHhcCcceEEEeeccCCCCceeeecCCCCC---CchhhhhhhhhhHHHhhhhce--------e
Q psy4062 145 SESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGNENH---KGIMYLTMGIRNRVSALTRQM--------C 213 (409)
Q Consensus 145 ~asQ~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G~~~~---~GIi~~~~~~~~lf~~~~~~~--------s 213 (409)
+++|++||+.+++|+|+++|+|||+||||||||||||||||+|+.++ +|||||++.+ +|..+.... |
T Consensus 81 ~~sQ~~Vy~~~~~~lv~~~l~G~N~tIfAYGqTGSGKTyTM~G~~~~~~~~Giipra~~~--lF~~i~~~~~~~~~v~vS 158 (358)
T 2nr8_A 81 DASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQ--VFRMIEERPTHAITVRVS 158 (358)
T ss_dssp SCCHHHHHHHHTHHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHH--HHHHHHTCTTSCEEEEEE
T ss_pred CcCHHHHHHHHHHHHHHHHhCCCceEEEEECCCCCCCceEecccccccccCCcHHHHHHH--HHHHHhhcCCceEEEEEE
Confidence 89999999999999999999999999999999999999999998765 8999999999 999887643 9
Q ss_pred EEEEEeceeeEe---------------------------------------------------------ecCcccceeeE
Q psy4062 214 TMRMYKTCLILR---------------------------------------------------------RKPSICEKMQL 236 (409)
Q Consensus 214 ~~eiy~~~~~~~---------------------------------------------------------~~~ssrsh~i~ 236 (409)
|+|||++.++|+ +..|||||++|
T Consensus 159 ~~EIYnE~i~DLL~~~~~~~~~~~~l~i~e~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If 238 (358)
T 2nr8_A 159 YLEIYNESLFDLLSTLPYVGPSVTPMTIVENPQGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIF 238 (358)
T ss_dssp EEEEETTEEEETTSSSTTSCTTTSCCEEEEETTEEEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEE
T ss_pred EEEEeCCeeeECcCCccccCccCCceEEEECCCceEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcCeEEE
Confidence 999999988886 23489999999
Q ss_pred EEEEEeeccc--cceeEEeEEEEeecCCcccccccCCccchhhhhcccchhHHHHHHHHHHHhcCC-CCcccCCchhhHh
Q psy4062 237 MVYVKMQDKA--TKQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLADGC-RHVPYRDSKLTRI 313 (409)
Q Consensus 237 ~i~v~~~~~~--~~~~~~skL~~VDLAGSEr~~~~~~~~~r~~E~~~IN~SL~aL~~vI~aL~~~~-~~iPyRdSkLT~L 313 (409)
+|+++..... ......++|+|||||||||..++++.|++++|+.+||+||++|++||.||++++ .||||||||||+|
T Consensus 239 ~i~v~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hiPyRdSkLT~L 318 (358)
T 2nr8_A 239 TIYLEAHSRTLSEEKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHA 318 (358)
T ss_dssp EEEEEEC-------CCEEEEEEEEECCCCC----------------CCSTHHHHHHHHHHHHHC-----CCGGGSHHHHH
T ss_pred EEEEEEEeccCCCCCEEEEEEEEEECCCCCcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCccCHHHHH
Confidence 9999976543 445568999999999999999999999999999999999999999999999865 6999999999999
Q ss_pred hhhccCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHHhcC
Q psy4062 314 LKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKI 353 (409)
Q Consensus 314 Lk~sLgGn~~t~~I~~isP~~~~~~eTl~TL~fa~rak~I 353 (409)
|||+|||||+|+||+||||+..+++||++||+||+|||.|
T Consensus 319 LqdsLgGnskt~mIa~isP~~~~~~ETlsTLrfA~Rak~I 358 (358)
T 2nr8_A 319 LKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFASRMKLV 358 (358)
T ss_dssp THHHHSSSSEEEEEEEECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred HHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999999999999986
No 27
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-72 Score=572.93 Aligned_cols=279 Identities=29% Similarity=0.490 Sum_probs=227.4
Q ss_pred ccccccccccccccCCCCCCCeEEEEEeCCCCChhhccCCceEEEEeCCcEEEeCCCCCCCcceeeccccchhhccccCC
Q psy4062 52 GCHSVMTTLELGIIHTGEQSHMKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKS 131 (409)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~ikV~vRvRP~~~~E~~~~~~~~v~~~~~~~ii~dp~~~~~~~~~~~~~~~~~~~~~~~~ 131 (409)
.+|+.++.+ +++|+|||||||+.+.+.... ..++.+... +............ .....
T Consensus 49 ~l~n~~~el---------kgnIrV~vRvRP~~~~~e~~~-~~~~~v~~~-----~~~~~~~~~~~~~--------~~~~~ 105 (403)
T 4etp_A 49 TLHNELQEL---------RGNIRVYLRIRPALKNLENSD-TSLINVNEF-----DDNSGVQSMEVTK--------IQNTA 105 (403)
T ss_dssp HHHHHHHHH---------HCSEEEEEEECCCCTTTSCSC-CTTEEECCC-----BTTTTBEEEEEEE--------CSSSC
T ss_pred HHHHHHHHc---------CCCeEEEEEeCCCCCcccccC-CCeeEEeec-----cCCCCceEEEEec--------CCCCc
Confidence 578777777 689999999999987732221 222222110 0000000000000 00122
Q ss_pred CceeEeeceEeCCCCCchhhhccchHHHHHHHhcCcceEEEeeccCCCCceeeecCCCCCCchhhhhhhhhhHHHhhhhc
Q psy4062 132 KEMEFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGNENHKGIMYLTMGIRNRVSALTRQ 211 (409)
Q Consensus 132 ~~~~F~FD~VF~~~asQ~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G~~~~~GIi~~~~~~~~lf~~~~~~ 211 (409)
..+.|.||+||+++++|++||+. +.|+|+++|+|||+||||||||||||||||+|+ ++|||||++.+ +|..+...
T Consensus 106 ~~~~F~FD~VF~~~~~Q~~Vf~~-v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~g~--~~Giipr~~~~--lF~~i~~~ 180 (403)
T 4etp_A 106 QVHEFKFDKIFDQQDTNVDVFKE-VGQLVQSSLDGYNVAIFAYGQTGSGKTFTMLNP--GDGIIPSTISH--IFNWINKL 180 (403)
T ss_dssp EEEEEEESEEECTTCCHHHHHHH-HHHHHHHHHTTCCEEEEEESCTTSSHHHHHHCT--TTSHHHHHHHH--HHHHHHHH
T ss_pred CceEEEcCEEECCCCchHHHHHH-HHHHHHHHhCCcceEEEEECCCCCCCceEeCCC--CCccchhHHHH--HHHHHHhh
Confidence 35689999999999999999997 569999999999999999999999999999996 45999999999 99887642
Q ss_pred ----------eeEEEEEeceeeEee-------------------------------------------------------
Q psy4062 212 ----------MCTMRMYKTCLILRR------------------------------------------------------- 226 (409)
Q Consensus 212 ----------~s~~eiy~~~~~~~~------------------------------------------------------- 226 (409)
.||+|||++.++|+.
T Consensus 181 ~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~ 260 (403)
T 4etp_A 181 KTKGWDYKVNAEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITNVTSVKLESEEMVEIILKKANKLRS 260 (403)
T ss_dssp HTTTEEEEEEEEEEEEETTEEEETTCC--------CCSCCCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHHC--C-
T ss_pred hccCceEEEEEEEEEEecceeeEccCCccccccccccCcceeeEEeCCCCCEEecCcEEEEeCCHHHHHHHHHHHHHhcc
Confidence 189999998887761
Q ss_pred -------cCcccceeeEEEEEEeeccccceeEEeEEEEeecCCcccccccCCccchhhhhcccchhHHHHHHHHHHHhcC
Q psy4062 227 -------KPSICEKMQLMVYVKMQDKATKQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLADG 299 (409)
Q Consensus 227 -------~~ssrsh~i~~i~v~~~~~~~~~~~~skL~~VDLAGSEr~~~~~~~~~r~~E~~~IN~SL~aL~~vI~aL~~~ 299 (409)
..|||||++|+|++...+........++|+|||||||||..++++.|+|++|+.+||+||++||+||.||+++
T Consensus 261 ~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~ 340 (403)
T 4etp_A 261 TASTASNEHSSRSHSIFIIHLSGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQP 340 (403)
T ss_dssp ---CHHHHHHHTSEEEEEEEEEEEETTTCCEEEEEEEEEECCCCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTSS
T ss_pred cccccCCcccCCcccEEEEEEEEeecCCCCeeEEEEEEEECCCCccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1278999999999999887777788999999999999999999999999999999999999999999999887
Q ss_pred C---CCcccCCchhhHhhhhccCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHHhcCcccce
Q psy4062 300 C---RHVPYRDSKLTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKIKAKVS 358 (409)
Q Consensus 300 ~---~~iPyRdSkLT~LLk~sLgGn~~t~~I~~isP~~~~~~eTl~TL~fa~rak~Ik~~~~ 358 (409)
. .||||||||||+||||+|||||+|+||+||||+..+++||++||+||+|+++|+..++
T Consensus 341 ~~~~~hiPyRdSkLT~LLqdsLgGnskt~mi~~vsP~~~~~~ETl~TL~fA~rv~~~~~~~r 402 (403)
T 4etp_A 341 DSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRLVSR 402 (403)
T ss_dssp CTTTSCCCGGGSHHHHHTGGGTSTTCEEEEEEEECCSGGGHHHHHHHHHHHHHHCCC-----
T ss_pred cCCCCcCCcccchHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHHhhcccCCC
Confidence 6 4999999999999999999999999999999999999999999999999999998764
No 28
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=100.00 E-value=5.2e-67 Score=567.99 Aligned_cols=269 Identities=31% Similarity=0.504 Sum_probs=208.2
Q ss_pred CCCeEEEEEeC----CCCChhhccCCceEEEEeCCcEEEeCCCCCCCcceeeccccchhhccccCCCceeEeeceEeCCC
Q psy4062 70 QSHMKVYIRVR----PQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKSKEMEFLFDRVYGPS 145 (409)
Q Consensus 70 ~~~ikV~vRvR----P~~~~E~~~~~~~~v~~~~~~~ii~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~ 145 (409)
...++|||||| |....|...+ ..++.+..+..+- +.... ... .....+....+++|.||+||+++
T Consensus 373 l~~~rV~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~-~~~-------~~~~~~~~~~~~~f~fd~vf~~~ 441 (715)
T 4h1g_A 373 KGNIRVFCRIRNVSSSSSSSSSSSS-EDIIQYEAPQDIN--DESKQ-ELV-------ITRNINNNFSNLRFLFDKIFERE 441 (715)
T ss_dssp SCSEEEEEEECCCC--------------BCEEECCC---------C-EEE-------EEEEETTEEEEEEEECSEEECSS
T ss_pred HhcCeEEEEEecccccccccccccc-ccceeccCCCCCC--CCCCC-eEE-------EcCCCCCCCCCeEEEeceEeCCC
Confidence 57899999999 5544443332 3344444333221 00000 000 01111224567789999999999
Q ss_pred CCchhhhccchHHHHHHHhcCcceEEEeeccCCCCceeeecCCCCCCchhhhhhhhhhHHHhhhhce----------eEE
Q psy4062 146 ESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGNENHKGIMYLTMGIRNRVSALTRQM----------CTM 215 (409)
Q Consensus 146 asQ~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G~~~~~GIi~~~~~~~~lf~~~~~~~----------s~~ 215 (409)
++|++||+.+ .|+|+++|+|||+||||||||||||||||+|. ++|||||++.+ +|+.+.... ||+
T Consensus 442 ~~q~~v~~~~-~~~v~~~~~G~n~~i~ayGqtgsGKT~Tm~g~--~~Giipr~~~~--lf~~~~~~~~~~~~~~v~~s~~ 516 (715)
T 4h1g_A 442 QSNDLVFEEL-SQLIQCSLDGTNVCVFAYGQTGSGKTFTMSHP--TNGMIPLSLKK--IFNDIEELKEKGWSYTVRGKFI 516 (715)
T ss_dssp CCHHHHGGGT-HHHHHHHHTTCCEEEEEESSTTSSHHHHHHCT--TTSHHHHHHHH--HHHHHHHHGGGTEEEEEEEEEE
T ss_pred CCHHHHHHHH-HHHHHHHhCCceEEEEccCCCCCchhhccCCC--CCCcHHHHHHH--HHHHHHHhhcCCceEEEEEEEE
Confidence 9999999875 69999999999999999999999999999984 57999999999 998876422 899
Q ss_pred EEEeceeeEe--------------------------------------------------------ecCcccceeeEEEE
Q psy4062 216 RMYKTCLILR--------------------------------------------------------RKPSICEKMQLMVY 239 (409)
Q Consensus 216 eiy~~~~~~~--------------------------------------------------------~~~ssrsh~i~~i~ 239 (409)
|||++.++|+ +..|||||++|+|+
T Consensus 517 Eiyne~i~DLl~~~~~~~~~~~~~~~~~~g~~~v~~l~~~~v~~~~~~~~~~~~g~~~r~~~~t~~n~~ssRSH~i~~i~ 596 (715)
T 4h1g_A 517 EIYNEAIVDLLNPKIDPNTKYEIKHDDIAGKTTVTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIFIID 596 (715)
T ss_dssp EEETTEEEESSSCCCCTTCCCCEEEETTTTEEEETTCCCEECSCHHHHHHHHHHHHCC----------CGGGSEEEEEEE
T ss_pred EEECCEEEECCCCCCCCCCcceeEEecCCCCEEEeCCEEEEcCCHHHHHHHHHHHHhccCcccccccCccccccEEEEEE
Confidence 9999988886 23489999999999
Q ss_pred EEeeccccceeEEeEEEEeecCCcccccccCCccchhhhhcccchhHHHHHHHHHHHhcC-CCCcccCCchhhHhhhhcc
Q psy4062 240 VKMQDKATKQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLADG-CRHVPYRDSKLTRILKDSL 318 (409)
Q Consensus 240 v~~~~~~~~~~~~skL~~VDLAGSEr~~~~~~~~~r~~E~~~IN~SL~aL~~vI~aL~~~-~~~iPyRdSkLT~LLk~sL 318 (409)
+.+.+........|+|+|||||||||..++++.|+|++|+.+||+||++|++||.+|+.+ ..|||||||||||||||+|
T Consensus 597 ~~~~~~~~~~~~~~~l~lvDLAGsEr~~~~~~~g~~~~E~~~IN~sL~~L~~vi~al~~~~~~~vpyR~SkLT~lL~~sl 676 (715)
T 4h1g_A 597 LQGYNSLTKESSYGTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNLKDGSHVPYRNSKLTYLLKHSL 676 (715)
T ss_dssp EEEEETTTCCEEEEEEEEEECCCCCC---------CHHHHHHHHHHHHHHHHHHHHHHHCSCCCCCGGGCHHHHHTGGGT
T ss_pred EEEEecCCCCEeEEEEEEEeCCCcccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCCCccCHHHHHHHhhc
Confidence 999888788888999999999999999999999999999999999999999999999865 4899999999999999999
Q ss_pred CCCccEEEEEEeCCCCCCHHHHHHHHHHHHHHhcCc
Q psy4062 319 GGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKIK 354 (409)
Q Consensus 319 gGn~~t~~I~~isP~~~~~~eTl~TL~fa~rak~Ik 354 (409)
||||+|+||+||||+..+++||++||+||+|||+||
T Consensus 677 ggn~~t~~i~~isp~~~~~~et~~tL~fa~r~~~i~ 712 (715)
T 4h1g_A 677 GGNSKTLMFVNISPLTKDLNETINSLRFATKVNNTR 712 (715)
T ss_dssp STTCEEEEEEEECCBGGGHHHHHHHHHHHHHHCC--
T ss_pred CCCceEEEEEEECCChhhHHHHHHHHHHHHHhccce
Confidence 999999999999999999999999999999999997
No 29
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.96 E-value=3.9e-31 Score=216.81 Aligned_cols=92 Identities=48% Similarity=0.704 Sum_probs=85.9
Q ss_pred hcccchhHHHHHHHHHHHhcC-CCCcccCCchhhHhhhhccCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHHhcCcccc
Q psy4062 279 GSNINKSLLALGNCINSLADG-CRHVPYRDSKLTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKIKAKV 357 (409)
Q Consensus 279 ~~~IN~SL~aL~~vI~aL~~~-~~~iPyRdSkLT~LLk~sLgGn~~t~~I~~isP~~~~~~eTl~TL~fa~rak~Ik~~~ 357 (409)
+.+||+||++||+||.+|+++ ..||||||||||+||+|+|||||+|+||+||||+..+++||++||+||+||+.|++++
T Consensus 1 a~~IN~SL~~Lg~vI~aL~~~~~~hvPyRdSkLT~lL~dsLgGnskt~mi~~vsp~~~~~~ETl~TL~fA~rak~i~~~~ 80 (100)
T 2kin_B 1 AKNINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTV 80 (100)
T ss_dssp CCBSSHHHHHHHHHHHHHHHTCCSSCCGGGCHHHHHTHHHHHSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCEEEE
T ss_pred CCcchHHHHHHHHHHHHHHhcCCCCCCCccchHHHHHHHHhcCCCceeEEEEeCcccchHHHHHHHHHHHHHHHhccCcc
Confidence 468999999999999999988 5899999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccCCchhhhh
Q psy4062 358 SRTFKSGAHFKLE 370 (409)
Q Consensus 358 ~~n~~~~~~~~~~ 370 (409)
.+|....+....+
T Consensus 81 ~~n~~~~~~~l~~ 93 (100)
T 2kin_B 81 SVNLELTAEEWKK 93 (100)
T ss_dssp CCEEECCHHHHHH
T ss_pred eeccCCCHHHHHH
Confidence 9998877655444
No 30
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.94 E-value=7.2e-28 Score=203.64 Aligned_cols=86 Identities=50% Similarity=0.758 Sum_probs=81.6
Q ss_pred chhHHHHHHHHHHHhcCC-CCcccCCchhhHhhhhccCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHHhcCcccceeec
Q psy4062 283 NKSLLALGNCINSLADGC-RHVPYRDSKLTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKIKAKVSRTF 361 (409)
Q Consensus 283 N~SL~aL~~vI~aL~~~~-~~iPyRdSkLT~LLk~sLgGn~~t~~I~~isP~~~~~~eTl~TL~fa~rak~Ik~~~~~n~ 361 (409)
|+||++||+||.+|+++. .||||||||||+||+|+|||||+|+||+||||+..+++||++||+||+||+.|+|++.+|.
T Consensus 1 N~SL~~Lg~vi~aL~~~~~~hvPyRdSkLT~lL~dsLggn~~t~~i~~isp~~~~~~eTl~TL~fa~rak~i~n~~~~n~ 80 (117)
T 3kin_B 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVSVNL 80 (117)
T ss_dssp CCHHHHHHHHHHHHHHSCCSSCCGGGSHHHHHTHHHHHSSSEEEEEEEECCSGGGHHHHHHHHHHHHHHTTCEEEECCCB
T ss_pred CCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHcCCCccceeeeeeCCCcccHHHHHHHHHHHHHhCcccCCceecC
Confidence 899999999999999885 7999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCchhh
Q psy4062 362 KSGAHFK 368 (409)
Q Consensus 362 ~~~~~~~ 368 (409)
...+...
T Consensus 81 ~~~~~~l 87 (117)
T 3kin_B 81 ELTAEEW 87 (117)
T ss_dssp CCCHHHH
T ss_pred cCCHHHH
Confidence 7776543
No 31
>2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae}
Probab=99.77 E-value=2.7e-19 Score=170.29 Aligned_cols=235 Identities=12% Similarity=0.103 Sum_probs=138.7
Q ss_pred ccccccccccccccCCCCCCCeEEEEEeCCCC-ChhhccCCceEEEEeCCcEEEeCCCCCCCcceeeccccchhhccccC
Q psy4062 52 GCHSVMTTLELGIIHTGEQSHMKVYIRVRPQS-QKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKK 130 (409)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~ikV~vRvRP~~-~~E~~~~~~~~v~~~~~~~ii~dp~~~~~~~~~~~~~~~~~~~~~~~ 130 (409)
.+|+.++.+ +|+|||||||||.. + ....+...+.. |..+.
T Consensus 14 kL~NsI~EL---------KGnIRVFcrvrp~~~p------~~~~v~y~~~~-I~v~~----------------------- 54 (298)
T 2o0a_A 14 RLENSIIEQ---------KGTMRCYAYVMEQNLP------ENLLFDYENGV-ITQGL----------------------- 54 (298)
T ss_dssp HHHHHHHHH---------HTCCEEEEEECGGGSC------TTEEEETTTTE-EEETT-----------------------
T ss_pred HHHhHHHHh---------hCceEEEEEeccccCC------ccceeecCccc-eeecC-----------------------
Confidence 466667666 68999999999954 2 11224443333 22221
Q ss_pred CCceeEeeceEeCCCCCch--hhhccchHHHHHHHhc-CcceEEEeeccCCCCceeeecCCCCCCchhhhhhhhhhHHHh
Q psy4062 131 SKEMEFLFDRVYGPSESNQ--DVYDGSTKDIIASLLE-GYNCSVFVYGATGAGKTHTMLGNENHKGIMYLTMGIRNRVSA 207 (409)
Q Consensus 131 ~~~~~F~FD~VF~~~asQ~--eVf~~~~~plV~~vl~-G~N~tI~aYGqTGSGKTyTm~G~~~~~GIi~~~~~~~~lf~~ 207 (409)
..+.|.||+||++.++|+ +||++ +.++|+.+|+ |||+||||||||||||| |+++.. +|..
T Consensus 55 -~~k~f~FDRVf~p~s~Qe~~~vf~E-~~~~i~scLd~GyNvcIfSyGQTGsGKT-------------~ral~q--~f~~ 117 (298)
T 2o0a_A 55 -SEHVYKFNRVIPHLKVSEDKFFTQE-YSVYHDMCLNQKKNFNLISLSTTPHGSL-------------RESLIK--FLAE 117 (298)
T ss_dssp -TCCEEECSEEEETTTSCHHHHHHHT-THHHHHHHHHTTCCEEEEEECSSCCHHH-------------HHHHHH--HHHS
T ss_pred -CCceEEeeeEECccccccHHHHHHH-HHHHHHHHHhCCCceEEEEECCCCCCcc-------------HHHHHH--HHHH
Confidence 114799999999999999 99998 4999999999 99999999999999999 888888 7766
Q ss_pred hhh--------ceeEEEEE-eceeeEeec--CcccceeeEE-------------EEEEe-eccc-------------cce
Q psy4062 208 LTR--------QMCTMRMY-KTCLILRRK--PSICEKMQLM-------------VYVKM-QDKA-------------TKQ 249 (409)
Q Consensus 208 ~~~--------~~s~~eiy-~~~~~~~~~--~ssrsh~i~~-------------i~v~~-~~~~-------------~~~ 249 (409)
... ..+++|+| ++.+.|+.. +++..|.+-. +.|.. .... ..-
T Consensus 118 ~~~~~~~~Y~~tlq~veLy~Ne~~~DLL~~~~~~~k~eIk~~~~g~~iv~~s~~i~V~~~~edv~~~~~~~~~~~~~~~g 197 (298)
T 2o0a_A 118 KDTIYQKQYVITLQFVFLSDDEFSQDMLLDYSHNDKDSIKLKFEKHSISLDSKLVIIENGLEDLPLNFSCDEHPNLPHSG 197 (298)
T ss_dssp TTSHHHHHEEEEEEEEEEECC-CEEETTSCCC------CEEEECSSCEEEESCCEEESSGGGGSCTTTTCC-------CE
T ss_pred hhhhcccceEEEEEEEEEecCCchHHhcCCCCCCCcceEEecCCCCEEecccEEEEccccHHHHHHHhhcccccccCCCC
Confidence 632 12899999 999998853 2222222110 11111 0000 011
Q ss_pred eEEeEEEEee----cCCcccccccCCccchhhhhcccc--hhHHHHHHHHHHHhcCCCCcccCCchhhHhhhhccCCCcc
Q psy4062 250 MKMVKLSMID----LAGSERAAANSSNQMRFKEGSNIN--KSLLALGNCINSLADGCRHVPYRDSKLTRILKDSLGGNCK 323 (409)
Q Consensus 250 ~~~skL~~VD----LAGSEr~~~~~~~~~r~~E~~~IN--~SL~aL~~vI~aL~~~~~~iPyRdSkLT~LLk~sLgGn~~ 323 (409)
+...|+.|.+ |-|-|.. .....-+ ..|| ++...|.+ +...+ -+-.|+++-+|+..| -..+
T Consensus 198 i~i~k~~~~~~~~~~~~~~~~---~~~d~yf---~e~~~~~~~~~l~~---~~~~~----~~~~spi~~il~~ll-~~tk 263 (298)
T 2o0a_A 198 MGIIKVQFFPRDSKSDGNNDP---VPVDFYF---IELNNLKSIEQFDK---SIFKK----ESCETPIALVLKKLI-SDTK 263 (298)
T ss_dssp EEEEEEEEEESCC-------C---CCEEEEE---EEECSHHHHHHHHH---HHHTC-----CCCSHHHHHHHHHH-HHSB
T ss_pred ceEEEEEEecCcccccccCCC---CceEEEE---EEeCCHHHHHHHHh---hcccc----cccCCcHHHHHHHHH-hcCc
Confidence 3344555554 1111000 0000000 0111 22344444 33233 345688888888877 3578
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHHHhcCcccceee
Q psy4062 324 TVMIANIAPTALSYEDSYNTLKYATRAKKIKAKVSRT 360 (409)
Q Consensus 324 t~~I~~isP~~~~~~eTl~TL~fa~rak~Ik~~~~~n 360 (409)
.++++++.-..... .-|..+++...++|..+.+
T Consensus 264 s~~~~~l~~~~~~~----~lL~~s~~i~~~~~~~~~~ 296 (298)
T 2o0a_A 264 SFFLLNLNDSKNVN----KLLTISEEVQTQLCKRKKK 296 (298)
T ss_dssp CEEEEEECCGGGHH----HHHHHHHHHHHHTC-----
T ss_pred ceEEEEecCCCchh----HHHHHHHHhhcccCccccc
Confidence 89999998654333 3789999999988865543
No 32
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=94.03 E-value=0.006 Score=53.42 Aligned_cols=50 Identities=16% Similarity=0.139 Sum_probs=34.9
Q ss_pred EeeceEeCCCCCchhhhccchHHHHHHHhcCcceEEEeeccCCCCceeeec
Q psy4062 136 FLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 136 F~FD~VF~~~asQ~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~ 186 (409)
++||.....+..|+++++. +..+++++-......++-||++|+|||+.+.
T Consensus 7 ~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 7 ANLDTYHPKNVSQNRALLT-IRVFVHNFNPEEGKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp CCSSSCCCCSHHHHHHHHH-HHHHHHSCCGGGCCEEEECCSSSSSHHHHHH
T ss_pred CccccccCCCHHHHHHHHH-HHHHHHhccccCCCEEEEECCCCCCHHHHHH
Confidence 5688766555667888764 3556665433334567889999999999874
No 33
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=93.06 E-value=0.017 Score=51.23 Aligned_cols=51 Identities=16% Similarity=0.177 Sum_probs=33.0
Q ss_pred eEeeceEeCCCCCchhhhccchHHHHHHHhcCcc-eEEEeeccCCCCceeeec
Q psy4062 135 EFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYN-CSVFVYGATGAGKTHTML 186 (409)
Q Consensus 135 ~F~FD~VF~~~asQ~eVf~~~~~plV~~vl~G~N-~tI~aYGqTGSGKTyTm~ 186 (409)
.++||.....+..+.++++. +...++..-.+.. ..|+-||++|+|||+.+.
T Consensus 21 ~~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~ 72 (202)
T 2w58_A 21 RASLSDVDLNDDGRIKAIRF-AERFVAEYEPGKKMKGLYLHGSFGVGKTYLLA 72 (202)
T ss_dssp CCCTTSSCCSSHHHHHHHHH-HHHHHHHCCSSCCCCEEEEECSTTSSHHHHHH
T ss_pred cCCHhhccCCChhHHHHHHH-HHHHHHHhhhccCCCeEEEECCCCCCHHHHHH
Confidence 35677766554456666663 3444444333322 678999999999999863
No 34
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=91.95 E-value=0.031 Score=53.93 Aligned_cols=50 Identities=14% Similarity=0.315 Sum_probs=31.3
Q ss_pred EeeceEeCCCCCchhhhccchHHHHHHHhcCcceEEEeeccCCCCceeeec
Q psy4062 136 FLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 136 F~FD~VF~~~asQ~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~ 186 (409)
++||.+......+..+++ .+...++..-.+....|+-||++|+||||.+.
T Consensus 121 ~tfd~f~~~~~~~~~~~~-~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 121 IHLSDIDVNNASRMEAFS-AILDFVEQYPSAEQKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp CCGGGSCCCSHHHHHHHH-HHHHHHHHCSCSSCCEEEEECSTTSSHHHHHH
T ss_pred CCHhhCcCCChHHHHHHH-HHHHHHHhccccCCceEEEECCCCCCHHHHHH
Confidence 566664433334455555 33445554433345678899999999999874
No 35
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=89.18 E-value=0.13 Score=43.93 Aligned_cols=30 Identities=23% Similarity=0.325 Sum_probs=23.6
Q ss_pred hHHHHHHHhcCcceEEEeeccCCCCceeee
Q psy4062 156 TKDIIASLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 156 ~~plV~~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
+..+++.+..+....++-||++|+|||+.+
T Consensus 31 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 31 IRRTIQVLQRRTKNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp HHHHHHHHTSSSSCEEEEECCTTSCHHHHH
T ss_pred HHHHHHHHhcCCCCceEEECCCCCCHHHHH
Confidence 455566666676778899999999999987
No 36
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=87.65 E-value=0.14 Score=43.73 Aligned_cols=31 Identities=23% Similarity=0.282 Sum_probs=23.9
Q ss_pred hHHHHHHHhcCcceEEEeeccCCCCceeeec
Q psy4062 156 TKDIIASLLEGYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 156 ~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~ 186 (409)
+..+++.+..+....++-||++|+|||+.+.
T Consensus 31 ~~~l~~~l~~~~~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 31 IRRAIQILSRRTKNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp HHHHHHHHTSSSSCEEEEESCGGGCHHHHHH
T ss_pred HHHHHHHHhCCCCCceEEECCCCCCHHHHHH
Confidence 4555666666667788999999999998763
No 37
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=87.42 E-value=0.12 Score=47.75 Aligned_cols=44 Identities=18% Similarity=0.295 Sum_probs=21.4
Q ss_pred EeeceEeCCCCCchhhhccchHHHHHHHhcCcceEEEeeccCCCCceeee
Q psy4062 136 FLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 136 F~FD~VF~~~asQ~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
|+||.+.+.+. ....+ ...+..+.. .+..|+-||.+|+|||+..
T Consensus 3 ~~f~~~ig~~~----~~~~~-~~~~~~~~~-~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 3 EYKDNLLGEAN----SFLEV-LEQVSHLAP-LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp -------CCCH----HHHHH-HHHHHHHTT-SCSCEEEECCTTSCHHHHH
T ss_pred cccccceeCCH----HHHHH-HHHHHHHhC-CCCCEEEECCCCCcHHHHH
Confidence 67888876432 22222 122233332 3466888999999999876
No 38
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=87.30 E-value=0.18 Score=47.96 Aligned_cols=36 Identities=19% Similarity=0.317 Sum_probs=23.1
Q ss_pred hhhccchHHHHHHHhc--Cc--ceEEEeeccCCCCceeee
Q psy4062 150 DVYDGSTKDIIASLLE--GY--NCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 150 eVf~~~~~plV~~vl~--G~--N~tI~aYGqTGSGKTyTm 185 (409)
.+.+.++..++.+.+. |. ...++-||++|+|||+..
T Consensus 14 ~~~~~~~~~~~k~~l~~~~~~~p~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 14 AFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQC 53 (293)
T ss_dssp HHHHHHHHHHHHTTSCCTTCCCCSEEEEEECTTSCHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 3344445555555443 22 246788999999999876
No 39
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=86.81 E-value=0.12 Score=47.80 Aligned_cols=51 Identities=24% Similarity=0.299 Sum_probs=30.9
Q ss_pred eEeeceEeCCCCCchhhhccchHHHH-----HHHhcCcceEEEeeccCCCCceeeec
Q psy4062 135 EFLFDRVYGPSESNQDVYDGSTKDII-----ASLLEGYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 135 ~F~FD~VF~~~asQ~eVf~~~~~plV-----~~vl~G~N~tI~aYGqTGSGKTyTm~ 186 (409)
.+.||.+.+.+...+.+.+ .+..+- ..+-......|+-||++|+|||+.+.
T Consensus 7 ~~~~~~i~G~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 7 NVRFKDMAGNEEAKEEVVE-IVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp CCCSTTSSSCTTTHHHHHH-HHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHH
T ss_pred CCCHHHhCCcHHHHHHHHH-HHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHH
Confidence 4678888887665555544 222111 11111223458999999999999863
No 40
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=84.51 E-value=0.17 Score=47.16 Aligned_cols=51 Identities=16% Similarity=0.238 Sum_probs=30.2
Q ss_pred eEeeceEeCCCCCchhhhccchHHHHH-----HHhcCcceEEEeeccCCCCceeee
Q psy4062 135 EFLFDRVYGPSESNQDVYDGSTKDIIA-----SLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 135 ~F~FD~VF~~~asQ~eVf~~~~~plV~-----~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
.+.||.+.+.+..-+.+.+.+..++.. ..--.....++-||++|+|||+.+
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 467888887544444444433322211 111123456899999999999876
No 41
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=84.46 E-value=0.23 Score=48.24 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=20.4
Q ss_pred HHhcCcceEEEeeccCCCCceeee
Q psy4062 162 SLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 162 ~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
.+-.|...+++-||++|+|||.++
T Consensus 39 ~i~~~~~~~lli~GpPGTGKT~~v 62 (318)
T 3te6_A 39 SLMSSQNKLFYITNADDSTKFQLV 62 (318)
T ss_dssp HHHTTCCCEEEEECCCSHHHHHHH
T ss_pred HhcCCCCCeEEEECCCCCCHHHHH
Confidence 344678889999999999999886
No 42
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=83.97 E-value=0.41 Score=42.71 Aligned_cols=24 Identities=38% Similarity=0.624 Sum_probs=19.4
Q ss_pred HHHHHhcCcceEEEeeccCCCCceee
Q psy4062 159 IIASLLEGYNCSVFVYGATGAGKTHT 184 (409)
Q Consensus 159 lV~~vl~G~N~tI~aYGqTGSGKTyT 184 (409)
.+..+++|.| ++..++||||||.+
T Consensus 44 ~i~~~~~~~~--~lv~~pTGsGKT~~ 67 (224)
T 1qde_A 44 AIMPIIEGHD--VLAQAQSGTGKTGT 67 (224)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHHHhcCCC--EEEECCCCCcHHHH
Confidence 4556778877 68889999999987
No 43
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=83.64 E-value=0.5 Score=42.03 Aligned_cols=22 Identities=18% Similarity=0.454 Sum_probs=17.9
Q ss_pred cCcceEEEeeccCCCCceeeec
Q psy4062 165 EGYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 165 ~G~N~tI~aYGqTGSGKTyTm~ 186 (409)
.+....++-||++|+|||+.+.
T Consensus 49 ~~~~~~~ll~G~~G~GKT~la~ 70 (242)
T 3bos_A 49 GDGVQAIYLWGPVKSGRTHLIH 70 (242)
T ss_dssp TCSCSEEEEECSTTSSHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHH
Confidence 3356778999999999998863
No 44
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=83.26 E-value=0.2 Score=47.62 Aligned_cols=50 Identities=16% Similarity=0.253 Sum_probs=29.3
Q ss_pred EeeceEeCCCCCchhhhccchHHHHHH-Hh----cCcceEEEeeccCCCCceeee
Q psy4062 136 FLFDRVYGPSESNQDVYDGSTKDIIAS-LL----EGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 136 F~FD~VF~~~asQ~eVf~~~~~plV~~-vl----~G~N~tI~aYGqTGSGKTyTm 185 (409)
+.||.|.+.+..-+.+.+.+..|+... .+ -.....|+-||++|+|||+.+
T Consensus 12 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 12 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 567777765443344444333332111 11 123457899999999999876
No 45
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=82.96 E-value=0.48 Score=41.56 Aligned_cols=25 Identities=32% Similarity=0.445 Sum_probs=19.1
Q ss_pred HHHHHhcCcceEEEeeccCCCCceeee
Q psy4062 159 IIASLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 159 lV~~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
.+..+++|.| ++..++||||||.+.
T Consensus 31 ~i~~~~~~~~--~li~~~TGsGKT~~~ 55 (207)
T 2gxq_A 31 ALPLALEGKD--LIGQARTGTGKTLAF 55 (207)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHcCCCC--EEEECCCCChHHHHH
Confidence 4456777876 577789999999873
No 46
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=82.77 E-value=0.31 Score=46.54 Aligned_cols=43 Identities=23% Similarity=0.461 Sum_probs=28.5
Q ss_pred eEeeceEeCCCCCchhhhccchHHHHHHHhcCcceEEEeeccCCCCceeee
Q psy4062 135 EFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 135 ~F~FD~VF~~~asQ~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
.|.||.+++. +.+.. -+...++.+....|+-||++|+|||+..
T Consensus 20 ~~~f~~i~G~----~~~~~----~l~~~~~~~~~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 20 VFPFSAIVGQ----EDMKL----ALLLTAVDPGIGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp CCCGGGSCSC----HHHHH----HHHHHHHCGGGCCEEEECCGGGCTTHHH
T ss_pred CCCchhccCh----HHHHH----HHHHHhhCCCCceEEEECCCCccHHHHH
Confidence 4778888764 33322 2333444444556999999999999876
No 47
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=82.59 E-value=0.3 Score=46.60 Aligned_cols=49 Identities=27% Similarity=0.540 Sum_probs=28.5
Q ss_pred eEeeceEeCCCCCchhhhccchHHHHHHHhcCcceEEEeeccCCCCceeeec
Q psy4062 135 EFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 135 ~F~FD~VF~~~asQ~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~ 186 (409)
.|+||.... ...+...+.. +..+++.-- +....++-||++|+|||+.+.
T Consensus 7 ~~~f~~fv~-g~~~~~a~~~-~~~~~~~~~-~~~~~lll~G~~GtGKT~la~ 55 (324)
T 1l8q_A 7 KYTLENFIV-GEGNRLAYEV-VKEALENLG-SLYNPIFIYGSVGTGKTHLLQ 55 (324)
T ss_dssp TCCSSSCCC-CTTTHHHHHH-HHHHHHTTT-TSCSSEEEECSSSSSHHHHHH
T ss_pred CCCcccCCC-CCcHHHHHHH-HHHHHhCcC-CCCCeEEEECCCCCcHHHHHH
Confidence 477887653 2233444432 233332211 123468899999999999874
No 48
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=82.39 E-value=0.24 Score=45.49 Aligned_cols=17 Identities=41% Similarity=0.673 Sum_probs=14.9
Q ss_pred EEEeeccCCCCceeeec
Q psy4062 170 SVFVYGATGAGKTHTML 186 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm~ 186 (409)
.++-||++|+|||+.+-
T Consensus 51 g~ll~G~~G~GKTtl~~ 67 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLAR 67 (254)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 38999999999999873
No 49
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=81.35 E-value=0.46 Score=41.36 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=17.4
Q ss_pred HhcCcceEEEeeccCCCCceeee
Q psy4062 163 LLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 163 vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
+-.+....++-||++|+|||+.+
T Consensus 33 l~~~~~~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 33 VERKNIPHLLFSGPPGTGKTATA 55 (226)
T ss_dssp HHTTCCCCEEEECSTTSSHHHHH
T ss_pred HhCCCCCeEEEECCCCCCHHHHH
Confidence 33444345999999999999876
No 50
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=81.00 E-value=0.79 Score=42.43 Aligned_cols=21 Identities=29% Similarity=0.257 Sum_probs=18.3
Q ss_pred cCcceEEEeeccCCCCceeee
Q psy4062 165 EGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 165 ~G~N~tI~aYGqTGSGKTyTm 185 (409)
......++-||++|+|||+..
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALA 81 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHH
Confidence 566788999999999999876
No 51
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=80.09 E-value=0.97 Score=39.52 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=19.0
Q ss_pred HHHHHhcCcceEEEeeccCCCCceeee
Q psy4062 159 IIASLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 159 lV~~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
.++.+++|.| ++..++||||||.+.
T Consensus 33 ~i~~~~~~~~--~lv~apTGsGKT~~~ 57 (206)
T 1vec_A 33 SIPIALSGRD--ILARAKNGTGKSGAY 57 (206)
T ss_dssp HHHHHHTTCC--EEEECCSSSTTHHHH
T ss_pred HHHHHccCCC--EEEECCCCCchHHHH
Confidence 4556678876 577889999999654
No 52
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=79.38 E-value=0.6 Score=44.98 Aligned_cols=47 Identities=19% Similarity=0.277 Sum_probs=31.9
Q ss_pred eEeeceEeCCCCCchhhhccchHHHHHHHhcCcce--EEEeeccCCCCceeeec
Q psy4062 135 EFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNC--SVFVYGATGAGKTHTML 186 (409)
Q Consensus 135 ~F~FD~VF~~~asQ~eVf~~~~~plV~~vl~G~N~--tI~aYGqTGSGKTyTm~ 186 (409)
.+.||.+.+. +.+.+. +..+++.+-.|... .++-||++|+|||+...
T Consensus 40 ~~~~~~ivG~----~~~~~~-l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 40 RQASQGMVGQ----LAARRA-AGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp CSEETTEESC----HHHHHH-HHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHH
T ss_pred CcchhhccCh----HHHHHH-HHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHH
Confidence 3567777763 343332 34456666667654 89999999999999874
No 53
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=79.17 E-value=0.24 Score=48.32 Aligned_cols=50 Identities=16% Similarity=0.307 Sum_probs=28.2
Q ss_pred EeeceEeCCCCCchhhhccchHHHHHH-H---hcCcceEEEeeccCCCCceeee
Q psy4062 136 FLFDRVYGPSESNQDVYDGSTKDIIAS-L---LEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 136 F~FD~VF~~~asQ~eVf~~~~~plV~~-v---l~G~N~tI~aYGqTGSGKTyTm 185 (409)
..||.+.+.+..-+.+.+.+..|+... + +.+....|+-||++|+|||+.+
T Consensus 81 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 81 VNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHH
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHH
Confidence 457777664332233333222222111 0 2344567999999999999876
No 54
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=79.00 E-value=0.77 Score=46.16 Aligned_cols=30 Identities=30% Similarity=0.490 Sum_probs=23.8
Q ss_pred HHHHHHHhcCcceEEEeeccCCCCceeeec
Q psy4062 157 KDIIASLLEGYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 157 ~plV~~vl~G~N~tI~aYGqTGSGKTyTm~ 186 (409)
.+++..++..-...++..|+||||||.||.
T Consensus 156 ~~~L~~l~~~~ggii~I~GpnGSGKTTlL~ 185 (418)
T 1p9r_A 156 HDNFRRLIKRPHGIILVTGPTGSGKSTTLY 185 (418)
T ss_dssp HHHHHHHHTSSSEEEEEECSTTSCHHHHHH
T ss_pred HHHHHHHHHhcCCeEEEECCCCCCHHHHHH
Confidence 346666666566788999999999999984
No 55
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=78.65 E-value=0.81 Score=40.64 Aligned_cols=25 Identities=28% Similarity=0.469 Sum_probs=19.1
Q ss_pred HHHHHhcCcceEEEeeccCCCCceeee
Q psy4062 159 IIASLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 159 lV~~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
.+..+++|.| ++..++||||||.+.
T Consensus 44 ~i~~~~~~~~--~li~~~TGsGKT~~~ 68 (220)
T 1t6n_A 44 CIPQAILGMD--VLCQAKSGMGKTAVF 68 (220)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCchhhhh
Confidence 4556778877 567789999999764
No 56
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=78.48 E-value=1.1 Score=40.65 Aligned_cols=25 Identities=32% Similarity=0.538 Sum_probs=19.8
Q ss_pred HHHHHHhcCcceEEEeeccCCCCceee
Q psy4062 158 DIIASLLEGYNCSVFVYGATGAGKTHT 184 (409)
Q Consensus 158 plV~~vl~G~N~tI~aYGqTGSGKTyT 184 (409)
..+..+++|.| ++..++||||||.+
T Consensus 58 ~~i~~~~~~~~--~l~~a~TGsGKT~~ 82 (245)
T 3dkp_A 58 QAIPVMLHGRE--LLASAPTGSGKTLA 82 (245)
T ss_dssp HHHHHHHTTCC--EEEECCTTSCHHHH
T ss_pred HHHHHHhCCCC--EEEECCCCCcHHHH
Confidence 34556778877 58888999999986
No 57
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=78.16 E-value=0.67 Score=42.04 Aligned_cols=26 Identities=35% Similarity=0.629 Sum_probs=20.1
Q ss_pred HHHHHHhcCcceEEEeeccCCCCceeee
Q psy4062 158 DIIASLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 158 plV~~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
..+..+++|.| ++..++||||||.+.
T Consensus 59 ~ai~~i~~~~~--~li~apTGsGKT~~~ 84 (237)
T 3bor_A 59 RAIIPCIKGYD--VIAQAQSGTGKTATF 84 (237)
T ss_dssp HHHHHHHTTCC--EEECCCSSHHHHHHH
T ss_pred HHHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 34556778877 578999999999773
No 58
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=78.15 E-value=0.3 Score=45.77 Aligned_cols=50 Identities=18% Similarity=0.306 Sum_probs=29.4
Q ss_pred EeeceEeCCCCCchhhhccchHHHHH-HHhcC---cceEEEeeccCCCCceeee
Q psy4062 136 FLFDRVYGPSESNQDVYDGSTKDIIA-SLLEG---YNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 136 F~FD~VF~~~asQ~eVf~~~~~plV~-~vl~G---~N~tI~aYGqTGSGKTyTm 185 (409)
..||.+.+.+..-+.+.+.+..|+.. .++.| ....|+-||++|+|||+.+
T Consensus 18 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 18 VEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHH
T ss_pred CCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 56888777543333333333333221 11222 3567999999999999876
No 59
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=77.90 E-value=0.61 Score=39.66 Aligned_cols=18 Identities=39% Similarity=0.800 Sum_probs=15.0
Q ss_pred eEEEeeccCCCCceeeec
Q psy4062 169 CSVFVYGATGAGKTHTML 186 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm~ 186 (409)
..++-||++|+|||+.+.
T Consensus 37 ~~~~l~G~~G~GKTtL~~ 54 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQ 54 (149)
T ss_dssp SEEEEESSSTTTTCHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 356779999999999873
No 60
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.85 E-value=0.48 Score=47.96 Aligned_cols=50 Identities=18% Similarity=0.290 Sum_probs=34.5
Q ss_pred EeeceEeCCCCCchhhhccchHHHHH-HHhc--C--cceEEEeeccCCCCceeee
Q psy4062 136 FLFDRVYGPSESNQDVYDGSTKDIIA-SLLE--G--YNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 136 F~FD~VF~~~asQ~eVf~~~~~plV~-~vl~--G--~N~tI~aYGqTGSGKTyTm 185 (409)
-+||.|-+.+.--+++-+.+..|+.. ..+. | .--.|+-||+.|+|||...
T Consensus 178 ~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 178 ETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHH
T ss_pred CChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHH
Confidence 46888877666556666666676653 2333 3 3456899999999999765
No 61
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=77.83 E-value=0.27 Score=47.30 Aligned_cols=20 Identities=35% Similarity=0.581 Sum_probs=17.2
Q ss_pred CcceEEEeeccCCCCceeee
Q psy4062 166 GYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 166 G~N~tI~aYGqTGSGKTyTm 185 (409)
+....++-||++|+|||+.+
T Consensus 42 ~~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHH
Confidence 45567899999999999887
No 62
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=77.65 E-value=0.42 Score=41.97 Aligned_cols=25 Identities=36% Similarity=0.563 Sum_probs=18.7
Q ss_pred HHHHHhcCcceEEEeeccCCCCceeee
Q psy4062 159 IIASLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 159 lV~~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
.++.+++|.+ ++..++||+|||.+.
T Consensus 41 ~i~~~~~~~~--~li~~~tGsGKT~~~ 65 (216)
T 3b6e_A 41 VAQPALEGKN--IIICLPTGSGKTRVA 65 (216)
T ss_dssp HHHHHHTTCC--EEEECSCHHHHHHHH
T ss_pred HHHHHhcCCC--EEEEcCCCCCHHHHH
Confidence 3445667766 567899999999876
No 63
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=77.04 E-value=1.2 Score=39.93 Aligned_cols=26 Identities=35% Similarity=0.472 Sum_probs=19.5
Q ss_pred HHHHHHhcCcceEEEeeccCCCCceeee
Q psy4062 158 DIIASLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 158 plV~~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
..+..+++|.| ++..++||||||.+.
T Consensus 54 ~~i~~~~~~~~--~li~a~TGsGKT~~~ 79 (236)
T 2pl3_A 54 QTIGLALQGKD--VLGAAKTGSGKTLAF 79 (236)
T ss_dssp HHHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHhCCCC--EEEEeCCCCcHHHHH
Confidence 34556778877 467789999999863
No 64
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=76.96 E-value=0.85 Score=42.22 Aligned_cols=25 Identities=40% Similarity=0.589 Sum_probs=19.6
Q ss_pred HHHHHHhcCcceEEEeeccCCCCceee
Q psy4062 158 DIIASLLEGYNCSVFVYGATGAGKTHT 184 (409)
Q Consensus 158 plV~~vl~G~N~tI~aYGqTGSGKTyT 184 (409)
.++..++.|.| +++.++||||||.+
T Consensus 83 ~~i~~~~~~~~--~lv~a~TGsGKT~~ 107 (262)
T 3ly5_A 83 KSIRPLLEGRD--LLAAAKTGSGKTLA 107 (262)
T ss_dssp HHHHHHHHTCC--CEECCCTTSCHHHH
T ss_pred HHHHHHhCCCc--EEEEccCCCCchHH
Confidence 34556777877 68889999999976
No 65
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=76.81 E-value=0.86 Score=44.75 Aligned_cols=29 Identities=28% Similarity=0.432 Sum_probs=22.6
Q ss_pred HHHHHHhcCcceEEEeeccCCCCceeeec
Q psy4062 158 DIIASLLEGYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 158 plV~~vl~G~N~tI~aYGqTGSGKTyTm~ 186 (409)
+.+.+++.--...++-.|+||||||.+|.
T Consensus 113 ~~l~~l~~~~~g~i~I~GptGSGKTTlL~ 141 (356)
T 3jvv_A 113 EVFKRVSDVPRGLVLVTGPTGSGKSTTLA 141 (356)
T ss_dssp HHHHHHHHCSSEEEEEECSTTSCHHHHHH
T ss_pred HHHHHHHhCCCCEEEEECCCCCCHHHHHH
Confidence 45666665556688899999999999973
No 66
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=76.41 E-value=1 Score=45.41 Aligned_cols=47 Identities=19% Similarity=0.258 Sum_probs=32.2
Q ss_pred eEeeceEeCCCCCchhhhccchHHHHHHHhcCcc--eEEEeeccCCCCceeeec
Q psy4062 135 EFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYN--CSVFVYGATGAGKTHTML 186 (409)
Q Consensus 135 ~F~FD~VF~~~asQ~eVf~~~~~plV~~vl~G~N--~tI~aYGqTGSGKTyTm~ 186 (409)
.+.||.+.+ |+++.+.+ ..+++.+..|.. ..++-||++|+|||+...
T Consensus 33 ~~~~~~iiG----~~~~~~~l-~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 33 KQAASGLVG----QENAREAC-GVIVELIKSKKMAGRAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp CSEETTEES----CHHHHHHH-HHHHHHHHTTCCTTCEEEEECCTTSSHHHHHH
T ss_pred hhchhhccC----HHHHHHHH-HHHHHHHHhCCCCCCeEEEECCCcCCHHHHHH
Confidence 356777765 45555433 456666666653 368889999999998763
No 67
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=76.09 E-value=1.3 Score=39.47 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=19.1
Q ss_pred HHHHHhcCcceEEEeeccCCCCceeee
Q psy4062 159 IIASLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 159 lV~~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
.+..+++|.|+ +..++||||||.+.
T Consensus 50 ~i~~~~~~~~~--l~~apTGsGKT~~~ 74 (228)
T 3iuy_A 50 AWPIILQGIDL--IVVAQTGTGKTLSY 74 (228)
T ss_dssp HHHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHHhCCCCE--EEECCCCChHHHHH
Confidence 34566788775 77789999999764
No 68
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=75.92 E-value=0.85 Score=45.91 Aligned_cols=48 Identities=25% Similarity=0.526 Sum_probs=27.1
Q ss_pred eEeeceEeCCCCCchhhhccchHHHHHHHhcCcceEEEeeccCCCCceeeec
Q psy4062 135 EFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 135 ~F~FD~VF~~~asQ~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~ 186 (409)
.|+||.... ..++...+.. +..+.+. .|..-.++-||++|+|||+.+.
T Consensus 101 ~~tfd~fv~-g~~n~~a~~~-~~~~a~~--~~~~~~lll~Gp~G~GKTtLa~ 148 (440)
T 2z4s_A 101 DYTFENFVV-GPGNSFAYHA-ALEVAKH--PGRYNPLFIYGGVGLGKTHLLQ 148 (440)
T ss_dssp TCSGGGCCC-CTTTHHHHHH-HHHHHHS--TTSSCCEEEECSSSSSHHHHHH
T ss_pred CCChhhcCC-CCchHHHHHH-HHHHHhC--CCCCCeEEEECCCCCCHHHHHH
Confidence 578887542 1233333321 2222222 1213458999999999999884
No 69
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=75.83 E-value=0.48 Score=44.20 Aligned_cols=17 Identities=41% Similarity=0.673 Sum_probs=14.9
Q ss_pred EEEeeccCCCCceeeec
Q psy4062 170 SVFVYGATGAGKTHTML 186 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm~ 186 (409)
.++-||++|||||+.+-
T Consensus 75 gvll~Gp~GtGKTtl~~ 91 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLAR 91 (278)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCcChHHHHHH
Confidence 38999999999998863
No 70
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=75.56 E-value=0.37 Score=46.36 Aligned_cols=49 Identities=18% Similarity=0.315 Sum_probs=28.4
Q ss_pred eeceEeCCCCCchhhhccchHHHHH-HHhcCc---ceEEEeeccCCCCceeee
Q psy4062 137 LFDRVYGPSESNQDVYDGSTKDIIA-SLLEGY---NCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 137 ~FD~VF~~~asQ~eVf~~~~~plV~-~vl~G~---N~tI~aYGqTGSGKTyTm 185 (409)
.||.|.+.+.--+.+-+.+..|+-. .++.|. ...|+-||++|+|||+..
T Consensus 10 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 10 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 5777776543333333333333221 233442 246899999999999876
No 71
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=75.31 E-value=1 Score=43.34 Aligned_cols=46 Identities=17% Similarity=0.254 Sum_probs=28.1
Q ss_pred EeeceEeCCCCCchhhhccchHHHHHHHhcCcc-e--EEEeeccCCCCceeeec
Q psy4062 136 FLFDRVYGPSESNQDVYDGSTKDIIASLLEGYN-C--SVFVYGATGAGKTHTML 186 (409)
Q Consensus 136 F~FD~VF~~~asQ~eVf~~~~~plV~~vl~G~N-~--tI~aYGqTGSGKTyTm~ 186 (409)
|.++.+++ +++..+.+ ...+..++.|.. . +++-||++|+|||..+.
T Consensus 14 ~~p~~l~g----r~~~~~~l-~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~ 62 (389)
T 1fnn_A 14 YVPKRLPH----REQQLQQL-DILLGNWLRNPGHHYPRATLLGRPGTGKTVTLR 62 (389)
T ss_dssp CCCSCCTT----CHHHHHHH-HHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHH
T ss_pred cCCCCCCC----hHHHHHHH-HHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHH
Confidence 44444443 34444433 334555555533 4 78999999999999873
No 72
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=75.21 E-value=1.5 Score=39.93 Aligned_cols=25 Identities=32% Similarity=0.567 Sum_probs=19.0
Q ss_pred HHHHHhcCcceEEEeeccCCCCceeee
Q psy4062 159 IIASLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 159 lV~~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
.+..+++|.| ++..++||||||.+.
T Consensus 53 ~i~~i~~~~~--~l~~a~TGsGKT~~~ 77 (253)
T 1wrb_A 53 AIPAILEHRD--IMACAQTGSGKTAAF 77 (253)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCChHHHHH
Confidence 4556778877 466789999999764
No 73
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=74.32 E-value=1.2 Score=37.32 Aligned_cols=20 Identities=30% Similarity=0.650 Sum_probs=16.4
Q ss_pred CcceEEEeeccCCCCceeee
Q psy4062 166 GYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 166 G~N~tI~aYGqTGSGKTyTm 185 (409)
..+..|+-||++|+|||+..
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 45566899999999999865
No 74
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=74.13 E-value=1.1 Score=37.51 Aligned_cols=19 Identities=21% Similarity=0.317 Sum_probs=15.6
Q ss_pred ceEEEeeccCCCCceeeec
Q psy4062 168 NCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 168 N~tI~aYGqTGSGKTyTm~ 186 (409)
+..|+-||++|+|||+...
T Consensus 27 ~~~vll~G~~GtGKt~lA~ 45 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVAR 45 (143)
T ss_dssp SSCEEEEEETTCCHHHHHG
T ss_pred CCcEEEECCCCccHHHHHH
Confidence 4457889999999998764
No 75
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=74.01 E-value=1.1 Score=42.76 Aligned_cols=29 Identities=28% Similarity=0.423 Sum_probs=20.7
Q ss_pred HHHHHHHhcCcceEEEeeccCCCCceeee
Q psy4062 157 KDIIASLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 157 ~plV~~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
..+...+..|....++-||++|+|||+++
T Consensus 47 ~~l~~~l~~~~~~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 47 TVLKKTLKSANLPHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp HHHHHHTTCTTCCCEEEECSTTSSHHHHH
T ss_pred HHHHHHHhcCCCCEEEEECCCCCCHHHHH
Confidence 44445555564334899999999999876
No 76
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=73.60 E-value=1.5 Score=41.52 Aligned_cols=27 Identities=19% Similarity=0.304 Sum_probs=20.4
Q ss_pred HHHHHhcCcceEEEeeccCCCCceeee
Q psy4062 159 IIASLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 159 lV~~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
.+..++.|...-+++.++||||||...
T Consensus 122 ai~~il~~~~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 122 ALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp HHHHHTSSSCCCEEEECCTTSSHHHHH
T ss_pred HHHHHHcCCCCeEEEECCCCCCccHHH
Confidence 456677874445788999999999863
No 77
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=72.77 E-value=1.9 Score=38.73 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=18.4
Q ss_pred HHHHHhcCcceEEEeeccCCCCceee
Q psy4062 159 IIASLLEGYNCSVFVYGATGAGKTHT 184 (409)
Q Consensus 159 lV~~vl~G~N~tI~aYGqTGSGKTyT 184 (409)
.+..+++|.| ++..++||||||.+
T Consensus 54 ~i~~~~~~~~--~l~~a~TGsGKT~~ 77 (230)
T 2oxc_A 54 AIPLGRCGLD--LIVQAKSGTGKTCV 77 (230)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCcHHHH
Confidence 3445678877 46678999999987
No 78
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=72.47 E-value=1.9 Score=39.50 Aligned_cols=25 Identities=32% Similarity=0.501 Sum_probs=18.8
Q ss_pred HHHHHhcCcceEEEeeccCCCCceeee
Q psy4062 159 IIASLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 159 lV~~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
.+..+++|.| ++..++||||||.+.
T Consensus 73 ~i~~i~~~~~--~lv~a~TGsGKT~~~ 97 (249)
T 3ber_A 73 AIPLALQGRD--IIGLAETGSGKTGAF 97 (249)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCCC--EEEEcCCCCCchhHh
Confidence 4556778876 466779999999864
No 79
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=72.43 E-value=1.9 Score=41.82 Aligned_cols=26 Identities=35% Similarity=0.623 Sum_probs=20.6
Q ss_pred HHHHHHhcCcceEEEeeccCCCCceeee
Q psy4062 158 DIIASLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 158 plV~~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
..+..+++|.+ ++..++||||||.+.
T Consensus 69 ~~i~~~~~~~~--~lv~a~TGsGKT~~~ 94 (414)
T 3eiq_A 69 RAILPCIKGYD--VIAQAQSGTGKTATF 94 (414)
T ss_dssp HHHHHHHTTCC--EEECCCSCSSSHHHH
T ss_pred HHhHHHhCCCC--EEEECCCCCcccHHH
Confidence 34566778888 578899999999873
No 80
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=72.37 E-value=2 Score=38.91 Aligned_cols=20 Identities=25% Similarity=0.333 Sum_probs=16.6
Q ss_pred cceEEEeeccCCCCceeeec
Q psy4062 167 YNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 167 ~N~tI~aYGqTGSGKTyTm~ 186 (409)
....|+-||++|+|||+...
T Consensus 38 ~~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 44568999999999998763
No 81
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=72.34 E-value=1.8 Score=40.45 Aligned_cols=20 Identities=25% Similarity=0.277 Sum_probs=16.5
Q ss_pred CcceEEEeeccCCCCceeee
Q psy4062 166 GYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 166 G~N~tI~aYGqTGSGKTyTm 185 (409)
.....|+-||++|+|||+..
T Consensus 65 ~~~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHH
T ss_pred CCCceEEEECCCCCCHHHHH
Confidence 34457999999999999876
No 82
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=72.31 E-value=0.24 Score=46.62 Aligned_cols=50 Identities=12% Similarity=0.201 Sum_probs=26.4
Q ss_pred EeeceEeCCCCCchhhhccchHHHHH-HHhcCcc----eEEEeeccCCCCceeee
Q psy4062 136 FLFDRVYGPSESNQDVYDGSTKDIIA-SLLEGYN----CSVFVYGATGAGKTHTM 185 (409)
Q Consensus 136 F~FD~VF~~~asQ~eVf~~~~~plV~-~vl~G~N----~tI~aYGqTGSGKTyTm 185 (409)
..||.|-+.+.-.+++.+.++.|+-. .++++++ ..++-||+.|||||+.+
T Consensus 7 ~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 7 VTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp -----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 45666665544444454444444432 1333222 23899999999999875
No 83
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=72.30 E-value=1.7 Score=39.41 Aligned_cols=27 Identities=33% Similarity=0.584 Sum_probs=19.9
Q ss_pred HHHHHHHhcCcceEEEeeccCCCCceeee
Q psy4062 157 KDIIASLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 157 ~plV~~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
..++..+.+|.+ ++..|+||||||..+
T Consensus 67 ~~~i~~i~~g~~--~~i~g~TGsGKTt~~ 93 (235)
T 3llm_A 67 SEILEAISQNSV--VIIRGATGCGKTTQV 93 (235)
T ss_dssp HHHHHHHHHCSE--EEEECCTTSSHHHHH
T ss_pred HHHHHHHhcCCE--EEEEeCCCCCcHHhH
Confidence 455666677754 578899999999754
No 84
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=71.77 E-value=1.7 Score=39.30 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=18.5
Q ss_pred HHHHHhcCcceEEEeeccCCCCceeee
Q psy4062 159 IIASLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 159 lV~~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
.+..+++|.|. +..++||||||.+.
T Consensus 59 ~i~~~~~g~~~--l~~apTGsGKT~~~ 83 (242)
T 3fe2_A 59 GWPVALSGLDM--VGVAQTGSGKTLSY 83 (242)
T ss_dssp HHHHHHHTCCE--EEEECTTSCHHHHH
T ss_pred HHHHHhCCCCE--EEECCCcCHHHHHH
Confidence 34556788775 56679999999873
No 85
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=71.46 E-value=1.9 Score=43.25 Aligned_cols=26 Identities=19% Similarity=0.295 Sum_probs=21.0
Q ss_pred HHHHHhcCcceEEEeeccCCCCceee
Q psy4062 159 IIASLLEGYNCSVFVYGATGAGKTHT 184 (409)
Q Consensus 159 lV~~vl~G~N~tI~aYGqTGSGKTyT 184 (409)
.+..++.|.+..++..|+||||||..
T Consensus 122 ai~~il~~~~~~~l~~a~TGsGKT~~ 147 (479)
T 3fmp_B 122 ALPLMLAEPPQNLIAQSQSGTGKTAA 147 (479)
T ss_dssp HHHHHTSBSCCEEEEECCSSSSHHHH
T ss_pred HHHHHHcCCCCcEEEEcCCCCchhHH
Confidence 45566777667789999999999977
No 86
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=70.81 E-value=2.1 Score=40.33 Aligned_cols=29 Identities=14% Similarity=0.358 Sum_probs=23.0
Q ss_pred HHHHHHHhcCc---ceEEEeeccCCCCceeee
Q psy4062 157 KDIIASLLEGY---NCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 157 ~plV~~vl~G~---N~tI~aYGqTGSGKTyTm 185 (409)
...+..+++|. --||+-||+.|+|||+..
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a 121 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIA 121 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHH
Confidence 44567788886 347999999999999875
No 87
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=70.65 E-value=1.5 Score=41.03 Aligned_cols=20 Identities=35% Similarity=0.503 Sum_probs=16.5
Q ss_pred cceEEEeeccCCCCceeeec
Q psy4062 167 YNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 167 ~N~tI~aYGqTGSGKTyTm~ 186 (409)
-...+.-.|+||||||.++.
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~ 43 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIA 43 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHH
Confidence 44577889999999999873
No 88
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=70.21 E-value=1.4 Score=38.67 Aligned_cols=18 Identities=28% Similarity=0.394 Sum_probs=15.5
Q ss_pred eEEEeeccCCCCceeeec
Q psy4062 169 CSVFVYGATGAGKTHTML 186 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm~ 186 (409)
..++-||+.|+|||+.+.
T Consensus 46 ~~~ll~G~~G~GKT~l~~ 63 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIAR 63 (250)
T ss_dssp SEEEEECSTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 478999999999998763
No 89
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=70.07 E-value=1.4 Score=39.22 Aligned_cols=25 Identities=40% Similarity=0.527 Sum_probs=18.6
Q ss_pred HHHHHhcCcceEEEeeccCCCCceeee
Q psy4062 159 IIASLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 159 lV~~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
.+..+++|.|+ +..++||||||.+.
T Consensus 34 ~i~~~~~~~~~--lv~a~TGsGKT~~~ 58 (219)
T 1q0u_A 34 IIPGALRGESM--VGQSQTGTGKTHAY 58 (219)
T ss_dssp HHHHHHHTCCE--EEECCSSHHHHHHH
T ss_pred HHHHHhCCCCE--EEECCCCChHHHHH
Confidence 34566678764 67789999999863
No 90
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=69.52 E-value=1.2 Score=43.01 Aligned_cols=45 Identities=22% Similarity=0.307 Sum_probs=28.2
Q ss_pred EeeceEeCCCCCchhhhccchHHHHHHHhcC-cceEEEeeccCCCCceeee
Q psy4062 136 FLFDRVYGPSESNQDVYDGSTKDIIASLLEG-YNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 136 F~FD~VF~~~asQ~eVf~~~~~plV~~vl~G-~N~tI~aYGqTGSGKTyTm 185 (409)
|.++.+++ +++..+.+ ...+..++.| ....++-||++|+|||+.+
T Consensus 17 ~~p~~l~g----r~~~~~~l-~~~l~~~~~~~~~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 17 SVFKEIPF----REDILRDA-AIAIRYFVKNEVKFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp HHCSSCTT----CHHHHHHH-HHHHHHHHTTCCCCEEEEEECTTSSHHHHH
T ss_pred cCCCCCCC----hHHHHHHH-HHHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 44454444 34444433 3345555544 3458999999999999886
No 91
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=69.48 E-value=2.2 Score=43.08 Aligned_cols=44 Identities=23% Similarity=0.366 Sum_probs=29.5
Q ss_pred eceEeCCCCCchhhhccchHHHHHHHhcCcceEEEeeccCCCCceeeec
Q psy4062 138 FDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 138 FD~VF~~~asQ~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~ 186 (409)
||.+++ |+.+... ...+...+-.|.-..++-||++|+|||+...
T Consensus 25 l~~ivG----q~~~~~~-~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr 68 (447)
T 3pvs_A 25 LAQYIG----QQHLLAA-GKPLPRAIEAGHLHSMILWGPPGTGKTTLAE 68 (447)
T ss_dssp TTTCCS----CHHHHST-TSHHHHHHHHTCCCEEEEECSTTSSHHHHHH
T ss_pred HHHhCC----cHHHHhc-hHHHHHHHHcCCCcEEEEECCCCCcHHHHHH
Confidence 555544 5666542 2445555555666789999999999998763
No 92
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=69.16 E-value=0.76 Score=45.19 Aligned_cols=51 Identities=20% Similarity=0.311 Sum_probs=28.2
Q ss_pred eEeeceEeCCCCCchhhhccchHHHHH-HHhc---CcceEEEeeccCCCCceeee
Q psy4062 135 EFLFDRVYGPSESNQDVYDGSTKDIIA-SLLE---GYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 135 ~F~FD~VF~~~asQ~eVf~~~~~plV~-~vl~---G~N~tI~aYGqTGSGKTyTm 185 (409)
.+.||.+.+.+.--+.+.+.+..++.. .++. .-...|+-||++|+|||+..
T Consensus 111 ~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 111 AVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHH
T ss_pred CCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHH
Confidence 456787777433222233222222221 0112 22357999999999999876
No 93
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=69.11 E-value=1.5 Score=42.06 Aligned_cols=29 Identities=31% Similarity=0.482 Sum_probs=19.7
Q ss_pred HHHHHHhcCcceEEEeeccCCCCceeeec
Q psy4062 158 DIIASLLEGYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 158 plV~~vl~G~N~tI~aYGqTGSGKTyTm~ 186 (409)
.+-..+-.|--..++-||+.|+|||+++.
T Consensus 36 ~L~~~i~~g~~~~~ll~Gp~G~GKTtla~ 64 (340)
T 1sxj_C 36 TVRKFVDEGKLPHLLFYGPPGTGKTSTIV 64 (340)
T ss_dssp HHHHHHHTTCCCCEEEECSSSSSHHHHHH
T ss_pred HHHHHHhcCCCceEEEECCCCCCHHHHHH
Confidence 33334445643337889999999999873
No 94
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=68.67 E-value=2.1 Score=39.10 Aligned_cols=26 Identities=27% Similarity=0.333 Sum_probs=19.3
Q ss_pred HHHHHhcCcceEEEeeccCCCCceeeec
Q psy4062 159 IIASLLEGYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 159 lV~~vl~G~N~tI~aYGqTGSGKTyTm~ 186 (409)
.+..++++.+ ++.+|+||+|||+...
T Consensus 101 ai~~~~~~~~--~ll~~~tG~GKT~~a~ 126 (237)
T 2fz4_A 101 ALERWLVDKR--GCIVLPTGSGKTHVAM 126 (237)
T ss_dssp HHHHHTTTSE--EEEEESSSTTHHHHHH
T ss_pred HHHHHHhCCC--EEEEeCCCCCHHHHHH
Confidence 3445667765 6677899999999864
No 95
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=68.65 E-value=1.9 Score=39.32 Aligned_cols=18 Identities=33% Similarity=0.468 Sum_probs=15.5
Q ss_pred ceEEEeeccCCCCceeee
Q psy4062 168 NCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 168 N~tI~aYGqTGSGKTyTm 185 (409)
...++-||++|+|||+.+
T Consensus 45 ~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 446899999999999876
No 96
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=68.57 E-value=1.4 Score=40.94 Aligned_cols=18 Identities=33% Similarity=0.569 Sum_probs=15.6
Q ss_pred ceEEEeeccCCCCceeee
Q psy4062 168 NCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 168 N~tI~aYGqTGSGKTyTm 185 (409)
...++-||++|+|||+..
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 456889999999999876
No 97
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=68.46 E-value=2.5 Score=41.02 Aligned_cols=25 Identities=32% Similarity=0.589 Sum_probs=19.4
Q ss_pred HHHHHhcCcceEEEeeccCCCCceeee
Q psy4062 159 IIASLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 159 lV~~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
.+..+++|.| ++..++||||||.+.
T Consensus 67 ai~~i~~~~~--~lv~a~TGsGKT~~~ 91 (410)
T 2j0s_A 67 AIKQIIKGRD--VIAQSQSGTGKTATF 91 (410)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCCchHHH
Confidence 4556778877 577889999999764
No 98
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=67.64 E-value=2.4 Score=40.83 Aligned_cols=28 Identities=18% Similarity=0.319 Sum_probs=21.2
Q ss_pred HHHHHHhcCcceEEEeeccCCCCceeee
Q psy4062 158 DIIASLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 158 plV~~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
..+..+++|.+..++..++||||||...
T Consensus 54 ~~i~~~~~~~~~~~lv~apTGsGKT~~~ 81 (412)
T 3fht_A 54 NALPLMLAEPPQNLIAQSQSGTGKTAAF 81 (412)
T ss_dssp HHHHHHHSSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHHHhcCCCCeEEEECCCCchHHHHH
Confidence 3456677775556788899999999873
No 99
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=67.24 E-value=1.8 Score=44.82 Aligned_cols=28 Identities=36% Similarity=0.475 Sum_probs=19.3
Q ss_pred HHHHHHhcCcceEEEeeccCCCCceeeec
Q psy4062 158 DIIASLLEGYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 158 plV~~vl~G~N~tI~aYGqTGSGKTyTm~ 186 (409)
.+++.+.+|.+.++++ ++||||||.++.
T Consensus 189 ~~~~~~~~~~~~~ll~-~~TGsGKT~~~~ 216 (590)
T 3h1t_A 189 RAVQSVLQGKKRSLIT-MATGTGKTVVAF 216 (590)
T ss_dssp HHHHHHHTTCSEEEEE-ECTTSCHHHHHH
T ss_pred HHHHHHhcCCCceEEE-ecCCCChHHHHH
Confidence 3444455576655444 899999999974
No 100
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=66.82 E-value=1.4 Score=41.25 Aligned_cols=17 Identities=41% Similarity=0.573 Sum_probs=15.4
Q ss_pred eEEEeeccCCCCceeee
Q psy4062 169 CSVFVYGATGAGKTHTM 185 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm 185 (409)
..++-+|++|+|||++.
T Consensus 48 ~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEEESCSSSSHHHHH
T ss_pred eEEEEECCCCcCHHHHH
Confidence 57999999999999876
No 101
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=66.82 E-value=2.2 Score=40.50 Aligned_cols=45 Identities=22% Similarity=0.259 Sum_probs=27.6
Q ss_pred eeceEeCCCCCchhhhccchHHHHHHHh--cCcceEEEeeccCCCCceeeec
Q psy4062 137 LFDRVYGPSESNQDVYDGSTKDIIASLL--EGYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 137 ~FD~VF~~~asQ~eVf~~~~~plV~~vl--~G~N~tI~aYGqTGSGKTyTm~ 186 (409)
.|+.+.+ ++++.+.+ ..++..+. .+....|+-||++|+|||+...
T Consensus 27 ~~~~iiG----~~~~~~~l-~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~ 73 (338)
T 3pfi_A 27 NFDGYIG----QESIKKNL-NVFIAAAKKRNECLDHILFSGPAGLGKTTLAN 73 (338)
T ss_dssp SGGGCCS----CHHHHHHH-HHHHHHHHHTTSCCCCEEEECSTTSSHHHHHH
T ss_pred CHHHhCC----hHHHHHHH-HHHHHHHHhcCCCCCeEEEECcCCCCHHHHHH
Confidence 3555544 44444432 34444443 2344678999999999998763
No 102
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=66.77 E-value=1.8 Score=40.41 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=18.0
Q ss_pred HhcCcceEEEeeccCCCCceeeec
Q psy4062 163 LLEGYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 163 vl~G~N~tI~aYGqTGSGKTyTm~ 186 (409)
+-.|....++-||+.|+|||++..
T Consensus 41 l~~~~~~~~ll~G~~G~GKT~la~ 64 (327)
T 1iqp_A 41 VKTGSMPHLLFAGPPGVGKTTAAL 64 (327)
T ss_dssp HHHTCCCEEEEESCTTSSHHHHHH
T ss_pred HHcCCCCeEEEECcCCCCHHHHHH
Confidence 334554458999999999998863
No 103
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=66.08 E-value=1.7 Score=39.65 Aligned_cols=27 Identities=22% Similarity=0.373 Sum_probs=19.9
Q ss_pred HHHHhcCcc--eEEEeeccCCCCceeeec
Q psy4062 160 IASLLEGYN--CSVFVYGATGAGKTHTML 186 (409)
Q Consensus 160 V~~vl~G~N--~tI~aYGqTGSGKTyTm~ 186 (409)
+..++.|.- -+++-||+.|+|||+...
T Consensus 48 l~~~~~~iPkkn~ili~GPPGtGKTt~a~ 76 (212)
T 1tue_A 48 LKSFLKGTPKKNCLVFCGPANTGKSYFGM 76 (212)
T ss_dssp HHHHHHTCTTCSEEEEESCGGGCHHHHHH
T ss_pred HHHHHhcCCcccEEEEECCCCCCHHHHHH
Confidence 444556632 469999999999998753
No 104
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=66.01 E-value=1.6 Score=44.75 Aligned_cols=20 Identities=30% Similarity=0.519 Sum_probs=16.8
Q ss_pred CcceEEEeeccCCCCceeee
Q psy4062 166 GYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 166 G~N~tI~aYGqTGSGKTyTm 185 (409)
.....|+-||++|+|||+..
T Consensus 236 ~~~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHH
T ss_pred CCCCcEEEECcCCCCHHHHH
Confidence 34567999999999999876
No 105
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=65.92 E-value=2.3 Score=40.20 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=17.0
Q ss_pred cCc-ceEEEeeccCCCCceeeec
Q psy4062 165 EGY-NCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 165 ~G~-N~tI~aYGqTGSGKTyTm~ 186 (409)
.|. ...++-||++|+|||+++.
T Consensus 44 ~~~~~~~~L~~G~~G~GKT~la~ 66 (324)
T 3u61_B 44 KGKIPHIILHSPSPGTGKTTVAK 66 (324)
T ss_dssp TTCCCSEEEECSSTTSSHHHHHH
T ss_pred cCCCCeEEEeeCcCCCCHHHHHH
Confidence 443 3567889999999999874
No 106
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=65.84 E-value=1.1 Score=43.67 Aligned_cols=50 Identities=18% Similarity=0.392 Sum_probs=27.8
Q ss_pred EeeceEeCCCCCchhhhccchHHHHH-HHhcCc---ceEEEeeccCCCCceeee
Q psy4062 136 FLFDRVYGPSESNQDVYDGSTKDIIA-SLLEGY---NCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 136 F~FD~VF~~~asQ~eVf~~~~~plV~-~vl~G~---N~tI~aYGqTGSGKTyTm 185 (409)
..||.|.+.+.--+.+.+.+..|+-. .++.+. ...|+-||++|+|||+..
T Consensus 48 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 48 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHH
Confidence 45777776443333333333333211 122221 245888999999999876
No 107
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=65.82 E-value=2.5 Score=41.30 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=18.9
Q ss_pred HHHHHhcCcceEEEeeccCCCCceee
Q psy4062 159 IIASLLEGYNCSVFVYGATGAGKTHT 184 (409)
Q Consensus 159 lV~~vl~G~N~tI~aYGqTGSGKTyT 184 (409)
.+..+++|.| ++..++||||||..
T Consensus 29 ~i~~i~~~~~--~lv~apTGsGKT~~ 52 (414)
T 3oiy_A 29 WAKRIVQGKS--FTMVAPTGVGKTTF 52 (414)
T ss_dssp HHHHHTTTCC--EECCSCSSSSHHHH
T ss_pred HHHHHhcCCC--EEEEeCCCCCHHHH
Confidence 4556678876 57889999999984
No 108
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=65.69 E-value=0.68 Score=46.87 Aligned_cols=50 Identities=24% Similarity=0.418 Sum_probs=31.7
Q ss_pred EeeceEeCCCCCchhhhccchHHHHH-HHhc--Cc--ceEEEeeccCCCCceeee
Q psy4062 136 FLFDRVYGPSESNQDVYDGSTKDIIA-SLLE--GY--NCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 136 F~FD~VF~~~asQ~eVf~~~~~plV~-~vl~--G~--N~tI~aYGqTGSGKTyTm 185 (409)
.+||.|-+-+.--+++-+.+..|+.. .++. |. .-.|+-||+.|+|||...
T Consensus 178 v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp SCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHH
T ss_pred CChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHH
Confidence 45777776554445555555555543 2333 32 357999999999999765
No 109
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=65.37 E-value=2.9 Score=39.90 Aligned_cols=27 Identities=22% Similarity=0.338 Sum_probs=20.1
Q ss_pred HHHHHhcCcceEEEeeccCCCCceeee
Q psy4062 159 IIASLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 159 lV~~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
.+..+++|....++..++||||||.+.
T Consensus 35 ~i~~~~~~~~~~~lv~a~TGsGKT~~~ 61 (395)
T 3pey_A 35 ALPLLLHNPPRNMIAQSQSGTGKTAAF 61 (395)
T ss_dssp HHHHHHCSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHHHcCCCCeEEEECCCCCcHHHHH
Confidence 455677774455688899999999864
No 110
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=64.81 E-value=0.91 Score=43.45 Aligned_cols=21 Identities=38% Similarity=0.673 Sum_probs=17.2
Q ss_pred CcceEEEeeccCCCCceeeec
Q psy4062 166 GYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 166 G~N~tI~aYGqTGSGKTyTm~ 186 (409)
+....++-||+.|+|||+.+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~ 63 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVK 63 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHH
Confidence 345678999999999999873
No 111
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=64.77 E-value=3.4 Score=38.96 Aligned_cols=31 Identities=26% Similarity=0.432 Sum_probs=22.3
Q ss_pred chHHHHHHHhcCc-----ceEEEeeccCCCCceeee
Q psy4062 155 STKDIIASLLEGY-----NCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 155 ~~~plV~~vl~G~-----N~tI~aYGqTGSGKTyTm 185 (409)
+...++..++.|+ ...|+..|+.|||||+..
T Consensus 15 ~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 15 RLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp HHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHH
T ss_pred HHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHH
Confidence 4455666666543 356888999999999864
No 112
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=64.71 E-value=2.9 Score=40.28 Aligned_cols=25 Identities=24% Similarity=0.480 Sum_probs=18.9
Q ss_pred HHHHHhcCcceEEEeeccCCCCceeee
Q psy4062 159 IIASLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 159 lV~~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
.+..+++|.+ ++..++||||||.+.
T Consensus 51 ~i~~i~~~~~--~li~a~TGsGKT~~~ 75 (400)
T 1s2m_A 51 AIPVAITGRD--ILARAKNGTGKTAAF 75 (400)
T ss_dssp HHHHHHHTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhcCCC--EEEECCCCcHHHHHH
Confidence 4456667877 577889999999754
No 113
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=64.32 E-value=3.4 Score=38.45 Aligned_cols=25 Identities=44% Similarity=0.610 Sum_probs=18.7
Q ss_pred HHHHHhcCcceEEEeeccCCCCceeee
Q psy4062 159 IIASLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 159 lV~~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
.++.+++|.+ ++..++||||||.+.
T Consensus 24 ~i~~i~~~~~--~lv~~~TGsGKT~~~ 48 (337)
T 2z0m_A 24 TIPLMLQGKN--VVVRAKTGSGKTAAY 48 (337)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHhcCCC--EEEEcCCCCcHHHHH
Confidence 4455667876 567789999999765
No 114
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=63.78 E-value=0.8 Score=46.17 Aligned_cols=17 Identities=24% Similarity=0.618 Sum_probs=15.1
Q ss_pred eEEEeeccCCCCceeee
Q psy4062 169 CSVFVYGATGAGKTHTM 185 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm 185 (409)
..|+-||++|+|||+..
T Consensus 168 ~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLA 184 (444)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 56899999999999876
No 115
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=63.15 E-value=1.7 Score=43.55 Aligned_cols=50 Identities=26% Similarity=0.382 Sum_probs=34.1
Q ss_pred EeeceEeCCCCCchhhhccchHHHHHH-Hhc--Cc--ceEEEeeccCCCCceeee
Q psy4062 136 FLFDRVYGPSESNQDVYDGSTKDIIAS-LLE--GY--NCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 136 F~FD~VF~~~asQ~eVf~~~~~plV~~-vl~--G~--N~tI~aYGqTGSGKTyTm 185 (409)
-+||.|-|-+.--+++-+.+.-|+..- ++. |. .-.|+-||+.|+|||...
T Consensus 145 v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHH
Confidence 457777776555566666666666532 343 32 356999999999999764
No 116
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=63.11 E-value=1.8 Score=42.59 Aligned_cols=27 Identities=30% Similarity=0.422 Sum_probs=19.4
Q ss_pred HHHHhcCcceEEEeeccCCCCceeeec
Q psy4062 160 IASLLEGYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 160 V~~vl~G~N~tI~aYGqTGSGKTyTm~ 186 (409)
+.++.---...+.-.|+||||||.+|.
T Consensus 128 l~~l~~~~g~~i~ivG~~GsGKTTll~ 154 (372)
T 2ewv_A 128 VLELCHRKMGLILVTGPTGSGKSTTIA 154 (372)
T ss_dssp HHHHTTSSSEEEEEECSSSSSHHHHHH
T ss_pred HHHHhhcCCCEEEEECCCCCCHHHHHH
Confidence 344333345678889999999999983
No 117
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=63.00 E-value=2.5 Score=43.50 Aligned_cols=21 Identities=33% Similarity=0.491 Sum_probs=16.8
Q ss_pred hcCcceEEEeeccCCCCceeeec
Q psy4062 164 LEGYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 164 l~G~N~tI~aYGqTGSGKTyTm~ 186 (409)
-.|.+ ++..|+||||||.+|.
T Consensus 258 ~~g~~--i~I~GptGSGKTTlL~ 278 (511)
T 2oap_1 258 EHKFS--AIVVGETASGKTTTLN 278 (511)
T ss_dssp HTTCC--EEEEESTTSSHHHHHH
T ss_pred hCCCE--EEEECCCCCCHHHHHH
Confidence 35665 6778999999999873
No 118
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=62.84 E-value=2.4 Score=40.43 Aligned_cols=16 Identities=31% Similarity=0.818 Sum_probs=14.3
Q ss_pred EEeeccCCCCceeeec
Q psy4062 171 VFVYGATGAGKTHTML 186 (409)
Q Consensus 171 I~aYGqTGSGKTyTm~ 186 (409)
++-||+.|+|||+++.
T Consensus 39 ~ll~Gp~G~GKTtl~~ 54 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCM 54 (354)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 8889999999999873
No 119
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=62.77 E-value=2.7 Score=37.49 Aligned_cols=32 Identities=22% Similarity=0.336 Sum_probs=24.4
Q ss_pred chHHHHHHHhcC-c--ceEEEeeccCCCCceeeec
Q psy4062 155 STKDIIASLLEG-Y--NCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 155 ~~~plV~~vl~G-~--N~tI~aYGqTGSGKTyTm~ 186 (409)
++-+-+|.++.| + ...+.-+|++|||||..+.
T Consensus 8 tG~~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~ 42 (243)
T 1n0w_A 8 TGSKELDKLLQGGIETGSITEMFGEFRTGKTQICH 42 (243)
T ss_dssp CSCHHHHHHTTTSEETTSEEEEECCTTSSHHHHHH
T ss_pred CCChHHHHhhcCCCcCCeEEEEECCCCCcHHHHHH
Confidence 455678888864 3 4567889999999998863
No 120
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=62.48 E-value=3.7 Score=40.71 Aligned_cols=25 Identities=28% Similarity=0.489 Sum_probs=19.2
Q ss_pred HHHHHhcCcceEEEeeccCCCCceeee
Q psy4062 159 IIASLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 159 lV~~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
.+..+++|.| +++.++||||||...
T Consensus 86 ai~~i~~g~d--~i~~a~TGsGKT~a~ 110 (434)
T 2db3_A 86 SIPVISSGRD--LMACAQTGSGKTAAF 110 (434)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHhcCCC--EEEECCCCCCchHHH
Confidence 4455678877 577889999999853
No 121
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=62.26 E-value=3.8 Score=39.63 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=18.5
Q ss_pred HHHHhcCcceEEEeeccCCCCceeee
Q psy4062 160 IASLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 160 V~~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
+..+++|.|+ +..++||||||.+.
T Consensus 46 i~~i~~~~~~--lv~a~TGsGKT~~~ 69 (417)
T 2i4i_A 46 IPIIKEKRDL--MACAQTGSGKTAAF 69 (417)
T ss_dssp HHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHccCCCE--EEEcCCCCHHHHHH
Confidence 4456788775 67889999999754
No 122
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=62.10 E-value=1.8 Score=40.19 Aligned_cols=25 Identities=16% Similarity=0.057 Sum_probs=17.5
Q ss_pred HHHHhcCcceEEEeeccCCCCceeeec
Q psy4062 160 IASLLEGYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 160 V~~vl~G~N~tI~aYGqTGSGKTyTm~ 186 (409)
+..++++.++ +..++||||||.+..
T Consensus 122 i~~~l~~~~~--ll~~~tGsGKT~~~~ 146 (282)
T 1rif_A 122 VFEGLVNRRR--ILNLPTSAGRSLIQA 146 (282)
T ss_dssp HHHHHHHSEE--EECCCTTSCHHHHHH
T ss_pred HHHHHhcCCe--EEEcCCCCCcHHHHH
Confidence 4445555444 338999999998864
No 123
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=62.04 E-value=3 Score=39.08 Aligned_cols=20 Identities=25% Similarity=0.384 Sum_probs=16.6
Q ss_pred CcceEEEeeccCCCCceeee
Q psy4062 166 GYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 166 G~N~tI~aYGqTGSGKTyTm 185 (409)
+....|+-||++|+|||+..
T Consensus 36 ~~~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 36 EPLEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp SCCCCCEEECCTTCCCHHHH
T ss_pred CCCCcEEEECCCCCCHHHHH
Confidence 34567889999999999876
No 124
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=62.04 E-value=0.89 Score=45.90 Aligned_cols=50 Identities=26% Similarity=0.472 Sum_probs=30.8
Q ss_pred EeeceEeCCCCCchhhhccchHHHHHH-Hhc--Cc--ceEEEeeccCCCCceeee
Q psy4062 136 FLFDRVYGPSESNQDVYDGSTKDIIAS-LLE--GY--NCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 136 F~FD~VF~~~asQ~eVf~~~~~plV~~-vl~--G~--N~tI~aYGqTGSGKTyTm 185 (409)
-+||.|-|-+.--+++.+.+..|+... .+. |. .-.|+-||+.|+|||...
T Consensus 169 v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHH
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHH
Confidence 457777765444445555444444332 332 32 345999999999999765
No 125
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=61.10 E-value=2.7 Score=42.73 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=19.0
Q ss_pred HHHhcCcceEEEeeccCCCCceeee
Q psy4062 161 ASLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 161 ~~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
..+++|.+..++..++||||||.+.
T Consensus 151 ~~i~~~~~~~~ll~apTGsGKT~~~ 175 (508)
T 3fho_A 151 PLLLSNPPRNMIGQSQSGTGKTAAF 175 (508)
T ss_dssp HHHHCSSCCCEEEECCSSTTSHHHH
T ss_pred HHHHcCCCCCEEEECCCCccHHHHH
Confidence 4566774455688899999999873
No 126
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=61.03 E-value=1.7 Score=40.47 Aligned_cols=21 Identities=29% Similarity=0.339 Sum_probs=16.7
Q ss_pred cCcceEEEeeccCCCCceeee
Q psy4062 165 EGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 165 ~G~N~tI~aYGqTGSGKTyTm 185 (409)
.|....++-||+.|+|||++.
T Consensus 35 ~~~~~~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 35 RKNIPHLLFSGPPGTGKTATA 55 (319)
T ss_dssp TTCCCCEEEESSSSSSHHHHH
T ss_pred CCCCCeEEEECcCCcCHHHHH
Confidence 454444899999999999876
No 127
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=60.56 E-value=4.7 Score=41.16 Aligned_cols=26 Identities=31% Similarity=0.447 Sum_probs=20.1
Q ss_pred HHHHHhcCcceEEEeeccCCCCceee
Q psy4062 159 IIASLLEGYNCSVFVYGATGAGKTHT 184 (409)
Q Consensus 159 lV~~vl~G~N~tI~aYGqTGSGKTyT 184 (409)
.+..++.|-+--+++.++||||||.+
T Consensus 102 ~i~~~l~~~~~~~lv~apTGsGKTl~ 127 (563)
T 3i5x_A 102 TIKPILSSEDHDVIARAKTGTGKTFA 127 (563)
T ss_dssp HHHHHHSSSSEEEEEECCTTSCHHHH
T ss_pred HHHHHhcCCCCeEEEECCCCCCccHH
Confidence 45566755556678899999999986
No 128
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=60.00 E-value=2.6 Score=40.17 Aligned_cols=50 Identities=18% Similarity=0.392 Sum_probs=28.0
Q ss_pred EeeceEeCCCCCchhhhccchHHHHH-HHhcCc---ceEEEeeccCCCCceeee
Q psy4062 136 FLFDRVYGPSESNQDVYDGSTKDIIA-SLLEGY---NCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 136 F~FD~VF~~~asQ~eVf~~~~~plV~-~vl~G~---N~tI~aYGqTGSGKTyTm 185 (409)
..||.|.+.+.--+.+.+.+..|+.. ..+.+. ...|+-||++|+|||+..
T Consensus 15 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 45777766433333333333333221 122222 346999999999999876
No 129
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=59.50 E-value=3.1 Score=38.73 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=18.6
Q ss_pred HHHHHhcCcceEEEeeccCCCCceeee
Q psy4062 159 IIASLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 159 lV~~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
+...+-.|.-..++-||+.|+|||+..
T Consensus 33 l~~~l~~~~~~~~ll~G~~G~GKt~la 59 (323)
T 1sxj_B 33 LQQIAKDGNMPHMIISGMPGIGKTTSV 59 (323)
T ss_dssp HHHHHHSCCCCCEEEECSTTSSHHHHH
T ss_pred HHHHHHcCCCCeEEEECcCCCCHHHHH
Confidence 333334454333899999999999876
No 130
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=59.13 E-value=4.7 Score=38.51 Aligned_cols=25 Identities=28% Similarity=0.469 Sum_probs=19.2
Q ss_pred HHHHHhcCcceEEEeeccCCCCceeee
Q psy4062 159 IIASLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 159 lV~~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
.+..+++|.+ ++..++||+|||.+.
T Consensus 38 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 62 (391)
T 1xti_A 38 CIPQAILGMD--VLCQAKSGMGKTAVF 62 (391)
T ss_dssp HHHHHTTTCC--EEEECSSCSSHHHHH
T ss_pred HHHHHhcCCc--EEEECCCCCcHHHHH
Confidence 4566778877 566789999999864
No 131
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=59.09 E-value=1.4 Score=41.80 Aligned_cols=27 Identities=19% Similarity=0.363 Sum_probs=19.0
Q ss_pred HHHHHHhcCcceEEEeeccCCCCceeeec
Q psy4062 158 DIIASLLEGYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 158 plV~~vl~G~N~tI~aYGqTGSGKTyTm~ 186 (409)
.+...+..|. .++-||++|+|||+.+.
T Consensus 38 ~l~~~l~~~~--~vll~G~pGtGKT~la~ 64 (331)
T 2r44_A 38 RLLIGICTGG--HILLEGVPGLAKTLSVN 64 (331)
T ss_dssp HHHHHHHHTC--CEEEESCCCHHHHHHHH
T ss_pred HHHHHHHcCC--eEEEECCCCCcHHHHHH
Confidence 3344444453 57889999999998763
No 132
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=58.95 E-value=3.1 Score=40.28 Aligned_cols=25 Identities=32% Similarity=0.509 Sum_probs=19.6
Q ss_pred HHHhcC---cceEEEe--eccCCCCceeee
Q psy4062 161 ASLLEG---YNCSVFV--YGATGAGKTHTM 185 (409)
Q Consensus 161 ~~vl~G---~N~tI~a--YGqTGSGKTyTm 185 (409)
..+..| ....++. ||+.|+|||..+
T Consensus 40 ~~~~~~~~~~~~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 40 NRLLSGAGLSDVNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp HHHHTSSCBCCEEEEEECTTCCSSSHHHHH
T ss_pred HHHhcCCCCCCCEEEEeCcCcCCCCHHHHH
Confidence 555556 4567888 999999999886
No 133
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=58.40 E-value=3.3 Score=39.05 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=17.9
Q ss_pred HHHHhcCcceEEEeeccCCCCceeee
Q psy4062 160 IASLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 160 V~~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
+..+++|.. .++..++||||||.+.
T Consensus 37 i~~~~~~~~-~~l~~~~TGsGKT~~~ 61 (367)
T 1hv8_A 37 IPLFLNDEY-NIVAQARTGSGKTASF 61 (367)
T ss_dssp HHHHHHTCS-EEEEECCSSSSHHHHH
T ss_pred HHHHhCCCC-CEEEECCCCChHHHHH
Confidence 445566632 3577899999999874
No 134
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=58.26 E-value=5.2 Score=41.77 Aligned_cols=25 Identities=32% Similarity=0.509 Sum_probs=19.8
Q ss_pred HHHHHHhcCcceEEEeeccCCCCceee
Q psy4062 158 DIIASLLEGYNCSVFVYGATGAGKTHT 184 (409)
Q Consensus 158 plV~~vl~G~N~tI~aYGqTGSGKTyT 184 (409)
.+|+.+++|.+ +++.++||+|||.+
T Consensus 51 ~~i~~il~g~d--~lv~~pTGsGKTl~ 75 (591)
T 2v1x_A 51 ETINVTMAGKE--VFLVMPTGGGKSLC 75 (591)
T ss_dssp HHHHHHHTTCC--EEEECCTTSCTTHH
T ss_pred HHHHHHHcCCC--EEEEECCCChHHHH
Confidence 35566788888 57788999999975
No 135
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=57.80 E-value=3.6 Score=39.02 Aligned_cols=20 Identities=25% Similarity=0.486 Sum_probs=17.0
Q ss_pred CcceEEEeeccCCCCceeee
Q psy4062 166 GYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 166 G~N~tI~aYGqTGSGKTyTm 185 (409)
..+..|+-||.+|+|||+..
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp STTSCEEEESCTTSCHHHHH
T ss_pred CCCCcEEEECCCCchHHHHH
Confidence 45677899999999999875
No 136
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=57.57 E-value=3.6 Score=43.35 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=19.3
Q ss_pred HHHHHhcCcceEEEeeccCCCCceeeec
Q psy4062 159 IIASLLEGYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 159 lV~~vl~G~N~tI~aYGqTGSGKTyTm~ 186 (409)
.|..++..... .+-.|+.|||||+|+.
T Consensus 197 AV~~al~~~~~-~lI~GPPGTGKT~ti~ 223 (646)
T 4b3f_X 197 AVLFALSQKEL-AIIHGPPGTGKTTTVV 223 (646)
T ss_dssp HHHHHHHCSSE-EEEECCTTSCHHHHHH
T ss_pred HHHHHhcCCCc-eEEECCCCCCHHHHHH
Confidence 45556643333 4678999999999985
No 137
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=57.55 E-value=5 Score=40.38 Aligned_cols=25 Identities=28% Similarity=0.527 Sum_probs=19.3
Q ss_pred HHHHHhcCcceEEEeeccCCCCceeee
Q psy4062 159 IIASLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 159 lV~~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
.+..+++|.| ++..++||||||.+.
T Consensus 15 ~i~~~~~~~~--~l~~~~tGsGKT~~~ 39 (556)
T 4a2p_A 15 LAQPAINGKN--ALICAPTGSGKTFVS 39 (556)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHcCCC--EEEEcCCCChHHHHH
Confidence 4556678877 467789999999774
No 138
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=57.47 E-value=1.3 Score=45.06 Aligned_cols=50 Identities=18% Similarity=0.334 Sum_probs=32.2
Q ss_pred EeeceEeCCCCCchhhhccchHHHHH-HHhc--C--cceEEEeeccCCCCceeee
Q psy4062 136 FLFDRVYGPSESNQDVYDGSTKDIIA-SLLE--G--YNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 136 F~FD~VF~~~asQ~eVf~~~~~plV~-~vl~--G--~N~tI~aYGqTGSGKTyTm 185 (409)
-+||.|-+-+.--+++-+.+..|+.. ..+. | .--.|+-||+.|+|||...
T Consensus 206 vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHH
T ss_pred CCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHH
Confidence 56777776555445555555555543 2333 3 3457999999999999754
No 139
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=56.77 E-value=3.9 Score=40.70 Aligned_cols=26 Identities=27% Similarity=0.333 Sum_probs=19.5
Q ss_pred HHHHHhcCcceEEEeeccCCCCceeeec
Q psy4062 159 IIASLLEGYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 159 lV~~vl~G~N~tI~aYGqTGSGKTyTm~ 186 (409)
.++.+++|.+ ++..++||+|||.+..
T Consensus 101 ai~~i~~~~~--~ll~~~TGsGKT~~~l 126 (472)
T 2fwr_A 101 ALERWLVDKR--GCIVLPTGSGKTHVAM 126 (472)
T ss_dssp HHHHHTTTTE--EEEECCTTSCHHHHHH
T ss_pred HHHHHHhcCC--EEEEeCCCCCHHHHHH
Confidence 4556677755 6778899999999863
No 140
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=56.75 E-value=5 Score=40.51 Aligned_cols=31 Identities=26% Similarity=0.360 Sum_probs=22.7
Q ss_pred HHHHHHHhcCcceEEEeeccCCCCceeeecC
Q psy4062 157 KDIIASLLEGYNCSVFVYGATGAGKTHTMLG 187 (409)
Q Consensus 157 ~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G 187 (409)
..+++.+-.+....++-||++|+|||+...+
T Consensus 190 ~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~ 220 (468)
T 3pxg_A 190 QRVIEVLSRRTKNNPVLIGEPGVGKTAIAEG 220 (468)
T ss_dssp HHHHHHHHCSSSCEEEEESCTTTTTHHHHHH
T ss_pred HHHHHHHhccCCCCeEEECCCCCCHHHHHHH
Confidence 4455555555666788999999999998753
No 141
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=56.01 E-value=2.5 Score=40.58 Aligned_cols=16 Identities=38% Similarity=0.567 Sum_probs=13.9
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
.++-||++|+|||+.+
T Consensus 53 ~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CEEEESSTTSSHHHHH
T ss_pred eEEEECCCCCcHHHHH
Confidence 4677999999999876
No 142
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=55.98 E-value=3.8 Score=36.00 Aligned_cols=30 Identities=27% Similarity=0.304 Sum_probs=21.5
Q ss_pred HHHHHHHhc-Cc--ceEEEeeccCCCCceeeec
Q psy4062 157 KDIIASLLE-GY--NCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 157 ~plV~~vl~-G~--N~tI~aYGqTGSGKTyTm~ 186 (409)
-+-++.++. |+ ...+.-+|++|||||..+.
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~ 41 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSL 41 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHH
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHH
Confidence 456677775 44 2456679999999998763
No 143
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=55.76 E-value=4 Score=42.83 Aligned_cols=25 Identities=32% Similarity=0.391 Sum_probs=18.5
Q ss_pred HHHHhcCcceEEEeeccCCCCceeeec
Q psy4062 160 IASLLEGYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 160 V~~vl~G~N~tI~aYGqTGSGKTyTm~ 186 (409)
+..++. +..++..|++|||||+|+.
T Consensus 158 i~~~l~--~~~~vi~G~pGTGKTt~l~ 182 (608)
T 1w36_D 158 AAVALT--RRISVISGGPGTGKTTTVA 182 (608)
T ss_dssp HHHHHT--BSEEEEECCTTSTHHHHHH
T ss_pred HHHHhc--CCCEEEEeCCCCCHHHHHH
Confidence 334454 3567899999999999874
No 144
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=55.64 E-value=2.2 Score=46.62 Aligned_cols=43 Identities=28% Similarity=0.418 Sum_probs=28.8
Q ss_pred eeceEeCCCCCchhhhccchHHHHHHHhcCcceEEEeeccCCCCceeeecC
Q psy4062 137 LFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLG 187 (409)
Q Consensus 137 ~FD~VF~~~asQ~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G 187 (409)
.||.+++. + ..+..+++.+..+....++-||++|+|||+.+.+
T Consensus 168 ~ld~viGr----~----~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~ 210 (854)
T 1qvr_A 168 KLDPVIGR----D----EEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEG 210 (854)
T ss_dssp CSCCCCSC----H----HHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHH
T ss_pred CCcccCCc----H----HHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHH
Confidence 45666553 2 2345555555566655678899999999998754
No 145
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=54.78 E-value=5.8 Score=41.56 Aligned_cols=25 Identities=28% Similarity=0.489 Sum_probs=18.9
Q ss_pred HHHHHhcCcceEEEeeccCCCCceeee
Q psy4062 159 IIASLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 159 lV~~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
++..+++|.|+ +..++||||||...
T Consensus 21 ~i~~~l~g~~~--iv~~~TGsGKTl~~ 45 (696)
T 2ykg_A 21 LALPAMKGKNT--IICAPTGCGKTFVS 45 (696)
T ss_dssp HHHHHHTTCCE--EEECCTTSSHHHHH
T ss_pred HHHHHHcCCCE--EEEcCCCchHHHHH
Confidence 44566778774 67889999999853
No 146
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=54.48 E-value=3.3 Score=41.80 Aligned_cols=50 Identities=26% Similarity=0.363 Sum_probs=29.3
Q ss_pred EeeceEeCCCCCchhhhccchHHHHH-HHhc--C--cceEEEeeccCCCCceeee
Q psy4062 136 FLFDRVYGPSESNQDVYDGSTKDIIA-SLLE--G--YNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 136 F~FD~VF~~~asQ~eVf~~~~~plV~-~vl~--G--~N~tI~aYGqTGSGKTyTm 185 (409)
-+||.|-+-+.--+++.+.+..|+.. ..+. | .--.|+-||+.|+|||...
T Consensus 179 v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 179 ESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp CCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHH
T ss_pred CcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHH
Confidence 34666655444344454444444432 2332 3 3467999999999999754
No 147
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=54.37 E-value=4.9 Score=35.38 Aligned_cols=30 Identities=30% Similarity=0.457 Sum_probs=22.5
Q ss_pred hHHHHHHHhc-Cc--ceEEEeeccCCCCceeee
Q psy4062 156 TKDIIASLLE-GY--NCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 156 ~~plV~~vl~-G~--N~tI~aYGqTGSGKTyTm 185 (409)
+-+-+|.++. |. ...+.-+|++|||||..+
T Consensus 10 G~~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 10 GSKSLDKLLGGGIETQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp SCHHHHHHTTSSEESSEEEEEEESTTSSHHHHH
T ss_pred CChhHHhHhcCCCCCCcEEEEECCCCCCHHHHH
Confidence 4567788884 44 345777999999999876
No 148
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=54.04 E-value=3.6 Score=39.31 Aligned_cols=25 Identities=36% Similarity=0.620 Sum_probs=18.9
Q ss_pred HHHHHhcCcceEEEeeccCCCCceeee
Q psy4062 159 IIASLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 159 lV~~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
.+..+++|.+ ++..++||||||.+.
T Consensus 51 ~i~~i~~~~~--~lv~~~TGsGKT~~~ 75 (394)
T 1fuu_A 51 AIMPIIEGHD--VLAQAQSGTGKTGTF 75 (394)
T ss_dssp HHHHHHHTCC--EEECCCSSHHHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCChHHHHH
Confidence 4456677876 467789999999873
No 149
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=53.86 E-value=6.3 Score=39.51 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=19.0
Q ss_pred HHHHHhcCcceEEEeeccCCCCceeee
Q psy4062 159 IIASLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 159 lV~~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
.+..+++|.| ++..++||||||.+.
T Consensus 12 ~i~~~~~~~~--~l~~~~tGsGKT~~~ 36 (555)
T 3tbk_A 12 LALPAKKGKN--TIICAPTGCGKTFVS 36 (555)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCCC--EEEEeCCCChHHHHH
Confidence 4556678877 466789999999774
No 150
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=53.06 E-value=6 Score=41.48 Aligned_cols=26 Identities=35% Similarity=0.557 Sum_probs=20.1
Q ss_pred HHHHHhcCcceEEEeeccCCCCceeeec
Q psy4062 159 IIASLLEGYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 159 lV~~vl~G~N~tI~aYGqTGSGKTyTm~ 186 (409)
+++.+++|.| ++..++||||||.+..
T Consensus 15 ~i~~il~g~~--~ll~~~TGsGKTl~~~ 40 (699)
T 4gl2_A 15 VAQPALEGKN--IIICLPTGCGKTRVAV 40 (699)
T ss_dssp HHHHHHSSCC--EEECCCTTSCHHHHHH
T ss_pred HHHHHHhCCC--EEEEcCCCCcHHHHHH
Confidence 4556777877 5778999999998753
No 151
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=52.96 E-value=4.8 Score=40.38 Aligned_cols=37 Identities=19% Similarity=0.331 Sum_probs=24.5
Q ss_pred CCCchhhhccchHHHHHHHhcCcceEEEeeccCCCCceeeec
Q psy4062 145 SESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 145 ~asQ~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~ 186 (409)
+..|.+.++.+ +..+.++- ..++..|..|||||+++.
T Consensus 27 n~~Q~~av~~~----~~~i~~~~-~~~li~G~aGTGKT~ll~ 63 (459)
T 3upu_A 27 TEGQKNAFNIV----MKAIKEKK-HHVTINGPAGTGATTLTK 63 (459)
T ss_dssp CHHHHHHHHHH----HHHHHSSS-CEEEEECCTTSCHHHHHH
T ss_pred CHHHHHHHHHH----HHHHhcCC-CEEEEEeCCCCCHHHHHH
Confidence 44677666543 33333333 378999999999998773
No 152
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=52.55 E-value=7.6 Score=40.00 Aligned_cols=26 Identities=31% Similarity=0.447 Sum_probs=19.4
Q ss_pred HHHHHhcCcceEEEeeccCCCCceee
Q psy4062 159 IIASLLEGYNCSVFVYGATGAGKTHT 184 (409)
Q Consensus 159 lV~~vl~G~N~tI~aYGqTGSGKTyT 184 (409)
++..++.|-+--+++.++||||||.+
T Consensus 51 ~i~~il~~~~~dvlv~apTGsGKTl~ 76 (579)
T 3sqw_A 51 TIKPILSSEDHDVIARAKTGTGKTFA 76 (579)
T ss_dssp HHHHHHCSSSEEEEEECCTTSCHHHH
T ss_pred HHHHHHccCCCeEEEEcCCCcHHHHH
Confidence 45566755445678889999999986
No 153
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=52.40 E-value=6.1 Score=36.10 Aligned_cols=31 Identities=29% Similarity=0.402 Sum_probs=20.3
Q ss_pred chHHHHHHHhcCc-----ceEEEeeccCCCCceeee
Q psy4062 155 STKDIIASLLEGY-----NCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 155 ~~~plV~~vl~G~-----N~tI~aYGqTGSGKTyTm 185 (409)
+...++..++.|+ ...|+..|+.|||||...
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 14 ALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIH 49 (253)
T ss_dssp HHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHH
T ss_pred HHHHHHHHHHccCCcccCCeEEEEECCCCCCHHHHH
Confidence 3344445555443 246888999999999753
No 154
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=52.38 E-value=3.3 Score=40.14 Aligned_cols=18 Identities=33% Similarity=0.634 Sum_probs=15.6
Q ss_pred ceEEEeeccCCCCceeee
Q psy4062 168 NCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 168 N~tI~aYGqTGSGKTyTm 185 (409)
...|+-||++|+|||+..
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 456899999999999875
No 155
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=52.24 E-value=5.5 Score=37.92 Aligned_cols=19 Identities=26% Similarity=0.394 Sum_probs=16.0
Q ss_pred ceEEEeeccCCCCceeeec
Q psy4062 168 NCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 168 N~tI~aYGqTGSGKTyTm~ 186 (409)
...++-||+.|+|||.++.
T Consensus 38 ~~~~ll~G~~G~GKT~la~ 56 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIAR 56 (373)
T ss_dssp CSEEEEESCTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4568999999999998873
No 156
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=51.80 E-value=7.6 Score=33.85 Aligned_cols=30 Identities=33% Similarity=0.491 Sum_probs=23.1
Q ss_pred hHHHHHHHhc-Ccc--eEEEeeccCCCCceeee
Q psy4062 156 TKDIIASLLE-GYN--CSVFVYGATGAGKTHTM 185 (409)
Q Consensus 156 ~~plV~~vl~-G~N--~tI~aYGqTGSGKTyTm 185 (409)
+-+-+|.++. |+. ..+.-+|.+|||||..+
T Consensus 5 G~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~ 37 (220)
T 2cvh_A 5 GTKSLDSLLGGGFAPGVLTQVYGPYASGKTTLA 37 (220)
T ss_dssp SCHHHHHHTTSSBCTTSEEEEECSTTSSHHHHH
T ss_pred CcHHHHHhhcCCCcCCEEEEEECCCCCCHHHHH
Confidence 3467788886 553 56788999999999775
No 157
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=51.69 E-value=4.6 Score=39.26 Aligned_cols=25 Identities=32% Similarity=0.339 Sum_probs=18.7
Q ss_pred HHHHHhcCcceEEEeeccCCCCceeeec
Q psy4062 159 IIASLLEGYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 159 lV~~vl~G~N~tI~aYGqTGSGKTyTm~ 186 (409)
.+..+++| .++..++||+|||.++.
T Consensus 17 ~i~~~~~~---~~ll~~~tG~GKT~~~~ 41 (494)
T 1wp9_A 17 IYAKCKET---NCLIVLPTGLGKTLIAM 41 (494)
T ss_dssp HHHHGGGS---CEEEECCTTSCHHHHHH
T ss_pred HHHHHhhC---CEEEEcCCCCCHHHHHH
Confidence 45567777 44667899999999864
No 158
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=51.49 E-value=5.5 Score=40.67 Aligned_cols=18 Identities=33% Similarity=0.589 Sum_probs=15.7
Q ss_pred ceEEEeeccCCCCceeee
Q psy4062 168 NCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 168 N~tI~aYGqTGSGKTyTm 185 (409)
...++-||++|+|||+++
T Consensus 77 ~~~lLL~GppGtGKTtla 94 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAA 94 (516)
T ss_dssp CSEEEEECSTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 357899999999999986
No 159
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=51.38 E-value=5.1 Score=42.05 Aligned_cols=26 Identities=27% Similarity=0.422 Sum_probs=18.8
Q ss_pred HHHHHhcCcceEEEeeccCCCCceeeec
Q psy4062 159 IIASLLEGYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 159 lV~~vl~G~N~tI~aYGqTGSGKTyTm~ 186 (409)
.|..++. +...+..|+.|||||+|+.
T Consensus 188 av~~~l~--~~~~li~GppGTGKT~~~~ 213 (624)
T 2gk6_A 188 AVKTVLQ--RPLSLIQGPPGTGKTVTSA 213 (624)
T ss_dssp HHHHHHT--CSEEEEECCTTSCHHHHHH
T ss_pred HHHHHhc--CCCeEEECCCCCCHHHHHH
Confidence 4455554 3356789999999999974
No 160
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=51.14 E-value=3.6 Score=35.28 Aligned_cols=17 Identities=29% Similarity=0.499 Sum_probs=14.5
Q ss_pred EEEeeccCCCCceeeec
Q psy4062 170 SVFVYGATGAGKTHTML 186 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm~ 186 (409)
.+.-.|++|||||..+-
T Consensus 11 i~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 56679999999999875
No 161
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=50.88 E-value=5.6 Score=35.62 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=18.5
Q ss_pred HHHHHHhcCcceEEEeeccCCCCceeee
Q psy4062 158 DIIASLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 158 plV~~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
.+++++-.|--. .-.|+.|||||..+
T Consensus 14 ~~l~~i~~Ge~~--~liG~nGsGKSTLl 39 (208)
T 3b85_A 14 HYVDAIDTNTIV--FGLGPAGSGKTYLA 39 (208)
T ss_dssp HHHHHHHHCSEE--EEECCTTSSTTHHH
T ss_pred HHHHhccCCCEE--EEECCCCCCHHHHH
Confidence 455666556544 44899999999876
No 162
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=50.85 E-value=4.6 Score=40.47 Aligned_cols=24 Identities=21% Similarity=0.195 Sum_probs=18.8
Q ss_pred HHHHhcCcceEEEeeccCCCCceee
Q psy4062 160 IASLLEGYNCSVFVYGATGAGKTHT 184 (409)
Q Consensus 160 V~~vl~G~N~tI~aYGqTGSGKTyT 184 (409)
+..+++|.+. +++.++||||||..
T Consensus 12 i~~~l~~~~~-~lv~a~TGsGKT~~ 35 (451)
T 2jlq_A 12 DEDIFRKKRL-TIMDLHPGAGKTKR 35 (451)
T ss_dssp CGGGGSTTCE-EEECCCTTSSCCTT
T ss_pred HHHHHhcCCe-EEEECCCCCCHhhH
Confidence 3457778765 57789999999986
No 163
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=50.67 E-value=6 Score=34.69 Aligned_cols=30 Identities=17% Similarity=0.149 Sum_probs=20.6
Q ss_pred hHHHHHHHhc---CcceEEEeeccCCCCceeee
Q psy4062 156 TKDIIASLLE---GYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 156 ~~plV~~vl~---G~N~tI~aYGqTGSGKTyTm 185 (409)
+..+++.++. .-...|...|..|||||..+
T Consensus 7 ~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 7 IDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp HHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHH
T ss_pred HHHHHHHHHHhccCCCeEEEEECCCCCCHHHHH
Confidence 3445555553 23356777999999999875
No 164
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=50.25 E-value=6 Score=34.86 Aligned_cols=30 Identities=23% Similarity=0.253 Sum_probs=19.7
Q ss_pred hHHHHHHHhc--CcceEEEeeccCCCCceeee
Q psy4062 156 TKDIIASLLE--GYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 156 ~~plV~~vl~--G~N~tI~aYGqTGSGKTyTm 185 (409)
+..+++.+.+ .-.-.|.-.|++|||||..+
T Consensus 8 ~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 8 CQGVLERLDPRQPGRQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp HHHHHHHSCTTCCSCEEEEEECCTTSCTHHHH
T ss_pred HHHHHHHHHhcCCCCeEEEEECCCCCCHHHHH
Confidence 3445555543 33345666899999999876
No 165
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=50.16 E-value=2 Score=43.82 Aligned_cols=17 Identities=29% Similarity=0.511 Sum_probs=15.0
Q ss_pred eEEEeeccCCCCceeee
Q psy4062 169 CSVFVYGATGAGKTHTM 185 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm 185 (409)
..|+-||++|+|||+.+
T Consensus 50 ~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLA 66 (476)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45999999999999876
No 166
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=49.16 E-value=4.6 Score=38.98 Aligned_cols=18 Identities=33% Similarity=0.621 Sum_probs=15.4
Q ss_pred ceEEEeeccCCCCceeee
Q psy4062 168 NCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 168 N~tI~aYGqTGSGKTyTm 185 (409)
...|+-||++|+|||+..
T Consensus 51 ~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 456888999999999875
No 167
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=48.88 E-value=5.2 Score=33.20 Aligned_cols=16 Identities=25% Similarity=0.580 Sum_probs=13.5
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
.|+-.|..|||||+..
T Consensus 3 ~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778999999999754
No 168
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=48.51 E-value=6 Score=41.95 Aligned_cols=40 Identities=33% Similarity=0.496 Sum_probs=29.1
Q ss_pred CCCCCchhhhccchHHHHHHHhcCcceEEEeeccCCCCceeeecC
Q psy4062 143 GPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLG 187 (409)
Q Consensus 143 ~~~asQ~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G 187 (409)
.|...|..-++ .+++.+-.|... ....|.|||||||||..
T Consensus 8 ~~~~~q~~ai~----~l~~~~~~~~~~-~~l~g~tgs~kt~~~a~ 47 (664)
T 1c4o_A 8 SPKGDQPKAIA----GLVEALRDGERF-VTLLGATGTGKTVTMAK 47 (664)
T ss_dssp CCCTTHHHHHH----HHHHHHHTTCSE-EEEEECTTSCHHHHHHH
T ss_pred CCCCCChHHHH----HHHHHHhcCCCc-EEEEcCCCcHHHHHHHH
Confidence 67888877654 356666677533 34579999999999963
No 169
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=47.85 E-value=6.2 Score=42.18 Aligned_cols=32 Identities=25% Similarity=0.327 Sum_probs=23.4
Q ss_pred hHHHHHHHhcCcceEEEeeccCCCCceeeecC
Q psy4062 156 TKDIIASLLEGYNCSVFVYGATGAGKTHTMLG 187 (409)
Q Consensus 156 ~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G 187 (409)
+..+++.+.......++-||++|+|||+.+.+
T Consensus 195 i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~ 226 (758)
T 1r6b_X 195 LERAIQVLCRRRKNNPLLVGESGVGKTAIAEG 226 (758)
T ss_dssp HHHHHHHHTSSSSCEEEEECCTTSSHHHHHHH
T ss_pred HHHHHHHHhccCCCCeEEEcCCCCCHHHHHHH
Confidence 34455555555666788999999999998743
No 170
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=47.54 E-value=3.9 Score=39.99 Aligned_cols=19 Identities=32% Similarity=0.408 Sum_probs=14.9
Q ss_pred ceEEEeeccCCCCceeeec
Q psy4062 168 NCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 168 N~tI~aYGqTGSGKTyTm~ 186 (409)
|.-++..|+||||||++|.
T Consensus 35 ~~~~~i~G~~G~GKs~~~~ 53 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAK 53 (392)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred cCceEEEcCCCCCHHHHHH
Confidence 3345778999999999873
No 171
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=47.41 E-value=9.3 Score=40.89 Aligned_cols=32 Identities=25% Similarity=0.343 Sum_probs=23.4
Q ss_pred hHHHHHHHhcCcceEEEeeccCCCCceeeecC
Q psy4062 156 TKDIIASLLEGYNCSVFVYGATGAGKTHTMLG 187 (409)
Q Consensus 156 ~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G 187 (409)
+..+++.+..+....++-||++|+|||....+
T Consensus 189 i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~ 220 (758)
T 3pxi_A 189 IQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEG 220 (758)
T ss_dssp HHHHHHHHHCSSSCEEEEESCTTTTTHHHHHH
T ss_pred HHHHHHHHhCCCCCCeEEECCCCCCHHHHHHH
Confidence 34455555556666789999999999987643
No 172
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=46.51 E-value=8.9 Score=33.99 Aligned_cols=28 Identities=29% Similarity=0.413 Sum_probs=20.3
Q ss_pred HHHHHHhcC-c--ceEEEeeccCCCCceeee
Q psy4062 158 DIIASLLEG-Y--NCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 158 plV~~vl~G-~--N~tI~aYGqTGSGKTyTm 185 (409)
+-+|.++.| + ...++-+|++|+|||..+
T Consensus 10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~ 40 (247)
T 2dr3_A 10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFS 40 (247)
T ss_dssp TTHHHHTTTSEETTCEEEEEECTTSSHHHHH
T ss_pred hhHHHHcCCCCCCCcEEEEECCCCCCHHHHH
Confidence 345677643 3 346788999999999885
No 173
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=46.38 E-value=7.4 Score=39.89 Aligned_cols=28 Identities=29% Similarity=0.408 Sum_probs=20.0
Q ss_pred HHHHHHHhcCcceEEEeeccCCCCceeeec
Q psy4062 157 KDIIASLLEGYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 157 ~plV~~vl~G~N~tI~aYGqTGSGKTyTm~ 186 (409)
.-++..+..|. -|+-||++|+|||+..-
T Consensus 32 ~~l~~al~~~~--~VLL~GpPGtGKT~LAr 59 (500)
T 3nbx_X 32 RLCLLAALSGE--SVFLLGPPGIAKSLIAR 59 (500)
T ss_dssp HHHHHHHHHTC--EEEEECCSSSSHHHHHH
T ss_pred HHHHHHHhcCC--eeEeecCchHHHHHHHH
Confidence 33444555554 57889999999998763
No 174
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=45.85 E-value=4.5 Score=37.20 Aligned_cols=18 Identities=50% Similarity=0.658 Sum_probs=16.1
Q ss_pred eEEEeeccCCCCceeeec
Q psy4062 169 CSVFVYGATGAGKTHTML 186 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm~ 186 (409)
..||..|..|+||||+|.
T Consensus 7 l~I~~~~kgGvGKTt~a~ 24 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAML 24 (228)
T ss_dssp EEEEEESSTTSSHHHHHH
T ss_pred EEEEEECCCCCcHHHHHH
Confidence 568999999999999985
No 175
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=45.36 E-value=4.1 Score=40.39 Aligned_cols=18 Identities=39% Similarity=0.593 Sum_probs=15.6
Q ss_pred ceEEEeeccCCCCceeee
Q psy4062 168 NCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 168 N~tI~aYGqTGSGKTyTm 185 (409)
+.-++..|.||||||.++
T Consensus 53 ~~h~~i~G~tGsGKs~~~ 70 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLL 70 (437)
T ss_dssp GGCEEEEECTTSSHHHHH
T ss_pred cceEEEECCCCCCHHHHH
Confidence 456799999999999986
No 176
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=44.90 E-value=5.3 Score=40.00 Aligned_cols=23 Identities=26% Similarity=0.650 Sum_probs=19.8
Q ss_pred HhcCcceEEEeeccCCCCceeee
Q psy4062 163 LLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 163 vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
+++|++-.|...|++|+|||..|
T Consensus 26 vl~~vsf~I~lvG~sGaGKSTLl 48 (418)
T 2qag_C 26 VKRGFEFTLMVVGESGLGKSTLI 48 (418)
T ss_dssp CC-CCCEEEEEECCTTSSHHHHH
T ss_pred EecCCCEEEEEECCCCCcHHHHH
Confidence 68899999999999999999765
No 177
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=44.64 E-value=5.6 Score=41.34 Aligned_cols=20 Identities=25% Similarity=0.537 Sum_probs=16.7
Q ss_pred cceEEEeeccCCCCceeeec
Q psy4062 167 YNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 167 ~N~tI~aYGqTGSGKTyTm~ 186 (409)
.++.++..|..|||||+|+.
T Consensus 21 ~~~~~lV~a~aGsGKT~~l~ 40 (647)
T 3lfu_A 21 PRSNLLVLAGAGSGKTRVLV 40 (647)
T ss_dssp CSSCEEEEECTTSCHHHHHH
T ss_pred CCCCEEEEECCCCCHHHHHH
Confidence 35567889999999999985
No 178
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=44.54 E-value=5.2 Score=34.64 Aligned_cols=16 Identities=31% Similarity=0.499 Sum_probs=13.0
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
.+.-.|++|||||..+
T Consensus 9 ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLV 24 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 4556799999999876
No 179
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=44.38 E-value=7.4 Score=42.95 Aligned_cols=25 Identities=28% Similarity=0.527 Sum_probs=19.2
Q ss_pred HHHHHhcCcceEEEeeccCCCCceeee
Q psy4062 159 IIASLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 159 lV~~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
.+..+++|.| ++..++||||||.+.
T Consensus 256 ai~~il~g~~--~ll~a~TGsGKTl~~ 280 (936)
T 4a2w_A 256 LAQPAINGKN--ALICAPTGSGKTFVS 280 (936)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHcCCC--EEEEeCCCchHHHHH
Confidence 4456678877 466789999999875
No 180
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=44.32 E-value=11 Score=42.07 Aligned_cols=24 Identities=42% Similarity=0.479 Sum_probs=18.5
Q ss_pred HHHHHhcCcceEEEeeccCCCCceee
Q psy4062 159 IIASLLEGYNCSVFVYGATGAGKTHT 184 (409)
Q Consensus 159 lV~~vl~G~N~tI~aYGqTGSGKTyT 184 (409)
.|..+++|.+ ++..++||||||..
T Consensus 47 aI~~il~g~~--vlv~apTGsGKTlv 70 (997)
T 4a4z_A 47 AVYHLEQGDS--VFVAAHTSAGKTVV 70 (997)
T ss_dssp HHHHHHTTCE--EEEECCTTSCSHHH
T ss_pred HHHHHHcCCC--EEEEECCCCcHHHH
Confidence 4556777865 68899999999954
No 181
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=43.95 E-value=5.4 Score=34.30 Aligned_cols=16 Identities=31% Similarity=0.702 Sum_probs=13.3
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
.+.-.|++|||||..+
T Consensus 7 ~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIK 22 (180)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566899999999876
No 182
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=43.95 E-value=6.9 Score=32.89 Aligned_cols=16 Identities=25% Similarity=0.507 Sum_probs=13.5
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
.|+-.|..|||||+..
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 5788999999999753
No 183
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=43.86 E-value=5.4 Score=35.24 Aligned_cols=17 Identities=24% Similarity=0.419 Sum_probs=14.0
Q ss_pred eEEEeeccCCCCceeee
Q psy4062 169 CSVFVYGATGAGKTHTM 185 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm 185 (409)
..|.-.|++|||||.++
T Consensus 9 ~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred cEEEEECcCCCCHHHHH
Confidence 35666899999999876
No 184
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=43.34 E-value=7.9 Score=42.15 Aligned_cols=50 Identities=18% Similarity=0.317 Sum_probs=33.3
Q ss_pred EeeceEeCCCCCchhhhccchHHHHH-HHhcCcc----eEEEeeccCCCCceeee
Q psy4062 136 FLFDRVYGPSESNQDVYDGSTKDIIA-SLLEGYN----CSVFVYGATGAGKTHTM 185 (409)
Q Consensus 136 F~FD~VF~~~asQ~eVf~~~~~plV~-~vl~G~N----~tI~aYGqTGSGKTyTm 185 (409)
-.||.|-+-+..-+++.+.+.-|+.. .++.++. ..|+-||+.|+|||...
T Consensus 201 v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LA 255 (806)
T 3cf2_A 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHH
T ss_pred CChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHH
Confidence 56777777665555565554455543 2455543 47999999999999765
No 185
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=43.32 E-value=5.4 Score=37.77 Aligned_cols=24 Identities=29% Similarity=0.664 Sum_probs=16.6
Q ss_pred HHhcCcceEEEeeccCCCCceeee
Q psy4062 162 SLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 162 ~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
.+++|++-.|...|++|+|||..|
T Consensus 12 ~~l~~~~~~I~lvG~nG~GKSTLl 35 (301)
T 2qnr_A 12 SVKKGFEFTLMVVGESGLGKSTLI 35 (301)
T ss_dssp ------CEEEEEEEETTSSHHHHH
T ss_pred EEEcCCCEEEEEECCCCCCHHHHH
Confidence 367889999999999999999765
No 186
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=43.08 E-value=7.2 Score=33.20 Aligned_cols=16 Identities=38% Similarity=0.679 Sum_probs=13.5
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
.|+-.|.+|||||..-
T Consensus 7 ~i~l~G~~GsGKst~a 22 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVG 22 (185)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788999999999754
No 187
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=42.61 E-value=8.3 Score=41.90 Aligned_cols=26 Identities=27% Similarity=0.402 Sum_probs=18.9
Q ss_pred HHHHHhcCcceEEEeeccCCCCceeeec
Q psy4062 159 IIASLLEGYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 159 lV~~vl~G~N~tI~aYGqTGSGKTyTm~ 186 (409)
.|..++.+ ..++..|+.|||||+|+.
T Consensus 368 Av~~~l~~--~~~lI~GppGTGKT~~i~ 393 (802)
T 2xzl_A 368 AVSHVLQR--PLSLIQGPPGTGKTVTSA 393 (802)
T ss_dssp HHHHHTTC--SEEEEECSTTSSHHHHHH
T ss_pred HHHHHhcC--CCEEEECCCCCCHHHHHH
Confidence 45555543 346789999999999974
No 188
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=42.49 E-value=5.2 Score=34.58 Aligned_cols=15 Identities=27% Similarity=0.722 Sum_probs=12.6
Q ss_pred EEeeccCCCCceeee
Q psy4062 171 VFVYGATGAGKTHTM 185 (409)
Q Consensus 171 I~aYGqTGSGKTyTm 185 (409)
+.-.|++|||||.++
T Consensus 4 i~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 4 IVISGPSGTGKSTLL 18 (186)
T ss_dssp EEEESSSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 455899999999876
No 189
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=42.26 E-value=8.7 Score=41.61 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=17.2
Q ss_pred HhcCcceEEEeeccCCCCceeee
Q psy4062 163 LLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 163 vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
+-.+....++..|+||||||...
T Consensus 384 l~~~~~~~~Ll~a~TGSGKTlva 406 (780)
T 1gm5_A 384 MISEKPMNRLLQGDVGSGKTVVA 406 (780)
T ss_dssp HHSSSCCCCEEECCSSSSHHHHH
T ss_pred ccccCCCcEEEEcCCCCCHHHHH
Confidence 33445456788999999999865
No 190
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=42.25 E-value=13 Score=36.15 Aligned_cols=21 Identities=19% Similarity=0.188 Sum_probs=13.7
Q ss_pred ccceEEEEEEeCCCCcccccc
Q psy4062 32 EQSHMKVYIRVRPQSQKEEDG 52 (409)
Q Consensus 32 ~~s~~~v~~r~rp~~~~e~~~ 52 (409)
+.+.|.|+||+||+...+...
T Consensus 20 ~~~~VrV~vRvRP~~~~e~~~ 40 (344)
T 3dc4_A 20 KLSAVRIAVREAPYRQFLGRR 40 (344)
T ss_dssp CCSEEEEEEEECCCC------
T ss_pred CCCCeEEEEECCCCCcccccC
Confidence 478999999999998766543
No 191
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=42.00 E-value=9.6 Score=36.71 Aligned_cols=18 Identities=33% Similarity=0.571 Sum_probs=15.0
Q ss_pred ceEEEeeccCCCCceeee
Q psy4062 168 NCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 168 N~tI~aYGqTGSGKTyTm 185 (409)
...+.-.|++|||||.|+
T Consensus 129 g~vi~lvG~nGaGKTTll 146 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTI 146 (328)
T ss_dssp SEEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 346677999999999987
No 192
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=41.97 E-value=9 Score=36.16 Aligned_cols=20 Identities=30% Similarity=0.474 Sum_probs=15.2
Q ss_pred CcceEEEeeccCCCCceeee
Q psy4062 166 GYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 166 G~N~tI~aYGqTGSGKTyTm 185 (409)
+-...|.-.|.+|||||..+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTS 48 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 33455667899999999875
No 193
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=41.97 E-value=11 Score=42.29 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=18.0
Q ss_pred HHHHHhcCcceEEEeeccCCCCcee
Q psy4062 159 IIASLLEGYNCSVFVYGATGAGKTH 183 (409)
Q Consensus 159 lV~~vl~G~N~tI~aYGqTGSGKTy 183 (409)
.+..+++|.| +++.++||||||.
T Consensus 64 ai~~il~g~d--vlv~apTGSGKTl 86 (1054)
T 1gku_B 64 WAKRILRKES--FAATAPTGVGKTS 86 (1054)
T ss_dssp HHHHHHTTCC--EECCCCBTSCSHH
T ss_pred HHHHHHhCCC--EEEEcCCCCCHHH
Confidence 4556778876 5788999999994
No 194
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=41.96 E-value=11 Score=40.10 Aligned_cols=17 Identities=41% Similarity=0.558 Sum_probs=15.2
Q ss_pred eEEEeeccCCCCceeee
Q psy4062 169 CSVFVYGATGAGKTHTM 185 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm 185 (409)
+.++-||++|+|||+..
T Consensus 489 ~~~ll~G~~GtGKT~la 505 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVT 505 (758)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 57999999999999875
No 195
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=41.87 E-value=7.1 Score=33.19 Aligned_cols=16 Identities=31% Similarity=0.565 Sum_probs=13.8
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
.|+..|..|||||+..
T Consensus 13 ~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 13 NILLTGTPGVGKTTLG 28 (180)
T ss_dssp CEEEECSTTSSHHHHH
T ss_pred eEEEEeCCCCCHHHHH
Confidence 5788999999999865
No 196
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=41.84 E-value=12 Score=40.07 Aligned_cols=16 Identities=44% Similarity=0.630 Sum_probs=14.6
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
.++-||++|+|||+..
T Consensus 523 ~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELA 538 (758)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 7999999999999875
No 197
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=41.80 E-value=8.9 Score=39.92 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=19.2
Q ss_pred HHHHHhcCcceEEEeeccCCCCceeeec
Q psy4062 159 IIASLLEGYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 159 lV~~vl~G~N~tI~aYGqTGSGKTyTm~ 186 (409)
.+..++.+ ..++..|..|||||+++.
T Consensus 197 Av~~~~~~--~~~~I~G~pGTGKTt~i~ 222 (574)
T 3e1s_A 197 VLDQLAGH--RLVVLTGGPGTGKSTTTK 222 (574)
T ss_dssp HHHHHTTC--SEEEEECCTTSCHHHHHH
T ss_pred HHHHHHhC--CEEEEEcCCCCCHHHHHH
Confidence 44555543 566779999999999874
No 198
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=41.69 E-value=12 Score=40.19 Aligned_cols=25 Identities=28% Similarity=0.527 Sum_probs=19.3
Q ss_pred HHHHHhcCcceEEEeeccCCCCceeee
Q psy4062 159 IIASLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 159 lV~~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
.+..+++|.| ++..++||||||.+.
T Consensus 256 ~i~~~l~~~~--~ll~~~TGsGKTl~~ 280 (797)
T 4a2q_A 256 LAQPAINGKN--ALICAPTGSGKTFVS 280 (797)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHhCCC--EEEEeCCCChHHHHH
Confidence 4556678877 467789999999874
No 199
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=41.66 E-value=6.4 Score=36.75 Aligned_cols=19 Identities=26% Similarity=0.684 Sum_probs=15.7
Q ss_pred cceEEEeeccCCCCceeee
Q psy4062 167 YNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 167 ~N~tI~aYGqTGSGKTyTm 185 (409)
|+-++...|++|+|||..|
T Consensus 1 f~f~v~lvG~nGaGKSTLl 19 (270)
T 3sop_A 1 FDFNIMVVGQSGLGKSTLV 19 (270)
T ss_dssp CEEEEEEEESSSSSHHHHH
T ss_pred CeeEEEEECCCCCCHHHHH
Confidence 3557888999999999776
No 200
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=41.46 E-value=8.9 Score=41.64 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=19.1
Q ss_pred HHHHHhcCcceEEEeeccCCCCceeeec
Q psy4062 159 IIASLLEGYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 159 lV~~vl~G~N~tI~aYGqTGSGKTyTm~ 186 (409)
.|..++.+ ...+..|+.|||||+|+.
T Consensus 364 Av~~~l~~--~~~lI~GppGTGKT~ti~ 389 (800)
T 2wjy_A 364 AVKTVLQR--PLSLIQGPPGTGKTVTSA 389 (800)
T ss_dssp HHHHHHTS--SEEEEECCTTSCHHHHHH
T ss_pred HHHHhccC--CeEEEEcCCCCCHHHHHH
Confidence 44555543 356789999999999975
No 201
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=41.16 E-value=5.9 Score=34.46 Aligned_cols=15 Identities=33% Similarity=0.689 Sum_probs=12.7
Q ss_pred EEeeccCCCCceeee
Q psy4062 171 VFVYGATGAGKTHTM 185 (409)
Q Consensus 171 I~aYGqTGSGKTyTm 185 (409)
+.-.|+.|||||..+
T Consensus 3 i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 3 IIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 456899999999876
No 202
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=40.96 E-value=10 Score=40.55 Aligned_cols=35 Identities=31% Similarity=0.447 Sum_probs=24.8
Q ss_pred hhhccchHHHHHHHh-cCcceEEEeeccCCCCceeee
Q psy4062 150 DVYDGSTKDIIASLL-EGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 150 eVf~~~~~plV~~vl-~G~N~tI~aYGqTGSGKTyTm 185 (409)
.||. ++.....+++ ++.|.||+.-|.+|||||.+.
T Consensus 76 Hifa-iA~~Ay~~m~~~~~nQsIiisGESGAGKTe~t 111 (697)
T 1lkx_A 76 HMYA-LANDAYRSMRQSQENQCVIISGESGAGKTEAS 111 (697)
T ss_dssp CHHH-HHHHHHHHHHHHCCCEEEEEECSTTSSHHHHH
T ss_pred hHHH-HHHHHHHHHHhcCCCcEEEecCCCCCCchhhH
Confidence 3443 2233334443 699999999999999999774
No 203
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=40.76 E-value=7.2 Score=37.14 Aligned_cols=18 Identities=44% Similarity=0.634 Sum_probs=14.6
Q ss_pred eEEEeeccCCCCceeeec
Q psy4062 169 CSVFVYGATGAGKTHTML 186 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm~ 186 (409)
..|.-.|++|||||.++-
T Consensus 103 ~vi~lvG~nGsGKTTll~ 120 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIA 120 (304)
T ss_dssp SEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 356667999999999883
No 204
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=40.64 E-value=6.1 Score=34.71 Aligned_cols=16 Identities=38% Similarity=0.702 Sum_probs=13.5
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
.+.-.|++|||||..+
T Consensus 6 ~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLL 21 (198)
T ss_dssp CEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4567899999999877
No 205
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=40.54 E-value=6.3 Score=33.75 Aligned_cols=17 Identities=24% Similarity=0.460 Sum_probs=14.2
Q ss_pred eEEEeeccCCCCceeee
Q psy4062 169 CSVFVYGATGAGKTHTM 185 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm 185 (409)
..|.-.|..|||||..+
T Consensus 10 ~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIA 26 (191)
T ss_dssp EEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35777999999999876
No 206
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=40.48 E-value=4.9 Score=35.15 Aligned_cols=17 Identities=29% Similarity=0.419 Sum_probs=14.5
Q ss_pred EEEeeccCCCCceeeec
Q psy4062 170 SVFVYGATGAGKTHTML 186 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm~ 186 (409)
.++-||+.|+|||+.+.
T Consensus 5 i~vi~G~~gsGKTT~ll 21 (184)
T 2orw_A 5 LTVITGPMYSGKTTELL 21 (184)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46789999999999874
No 207
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=40.47 E-value=7.5 Score=39.79 Aligned_cols=26 Identities=38% Similarity=0.715 Sum_probs=19.3
Q ss_pred HHHHHHhcCcceEEEeeccCCCCceeee
Q psy4062 158 DIIASLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 158 plV~~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
.+++.+++|.++ +..++||||||.+.
T Consensus 32 ~~i~~il~g~d~--lv~apTGsGKTl~~ 57 (523)
T 1oyw_A 32 EIIDTVLSGRDC--LVVMPTGGGKSLCY 57 (523)
T ss_dssp HHHHHHHTTCCE--EEECSCHHHHHHHH
T ss_pred HHHHHHHcCCCE--EEECCCCcHHHHHH
Confidence 355567788875 55679999999754
No 208
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=40.42 E-value=12 Score=40.79 Aligned_cols=17 Identities=41% Similarity=0.573 Sum_probs=15.4
Q ss_pred eEEEeeccCCCCceeee
Q psy4062 169 CSVFVYGATGAGKTHTM 185 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm 185 (409)
..|+-||++|+|||+..
T Consensus 589 ~~vLl~Gp~GtGKT~lA 605 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELA 605 (854)
T ss_dssp EEEEEBSCSSSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 68999999999999875
No 209
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=40.05 E-value=6 Score=36.04 Aligned_cols=18 Identities=33% Similarity=0.445 Sum_probs=15.3
Q ss_pred eEEEeeccCCCCceeeec
Q psy4062 169 CSVFVYGATGAGKTHTML 186 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm~ 186 (409)
..++-||..|+|||..+.
T Consensus 13 ~i~litG~mGsGKTT~ll 30 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELI 30 (223)
T ss_dssp EEEEEECSTTSCHHHHHH
T ss_pred EEEEEECCCCCcHHHHHH
Confidence 467889999999998875
No 210
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=40.04 E-value=6.7 Score=37.30 Aligned_cols=17 Identities=29% Similarity=0.722 Sum_probs=14.6
Q ss_pred eEEEeeccCCCCceeee
Q psy4062 169 CSVFVYGATGAGKTHTM 185 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm 185 (409)
..+.-.|++|||||.++
T Consensus 101 ~vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSL 117 (302)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEEcCCCCCHHHHH
Confidence 35677999999999988
No 211
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=39.81 E-value=8.8 Score=35.85 Aligned_cols=17 Identities=18% Similarity=0.313 Sum_probs=15.2
Q ss_pred eEEEeeccCCCCceeee
Q psy4062 169 CSVFVYGATGAGKTHTM 185 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm 185 (409)
..++.+|+.|+|||..+
T Consensus 32 ~~v~i~G~~G~GKT~Ll 48 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLL 48 (350)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCcCCHHHHH
Confidence 67889999999999876
No 212
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=39.77 E-value=6.9 Score=34.85 Aligned_cols=18 Identities=39% Similarity=0.575 Sum_probs=14.4
Q ss_pred eEEEeeccCCCCceeeec
Q psy4062 169 CSVFVYGATGAGKTHTML 186 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm~ 186 (409)
..+.-.|++|||||..+.
T Consensus 31 ~~~~l~GpnGsGKSTLl~ 48 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAA 48 (251)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHH
Confidence 355669999999998874
No 213
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=39.73 E-value=9.9 Score=32.01 Aligned_cols=17 Identities=24% Similarity=0.456 Sum_probs=14.3
Q ss_pred eEEEeeccCCCCceeee
Q psy4062 169 CSVFVYGATGAGKTHTM 185 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm 185 (409)
..|+..|..|||||...
T Consensus 4 ~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 36888999999999764
No 214
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=39.09 E-value=6.8 Score=37.09 Aligned_cols=18 Identities=44% Similarity=0.754 Sum_probs=14.7
Q ss_pred eEEEeeccCCCCceeeec
Q psy4062 169 CSVFVYGATGAGKTHTML 186 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm~ 186 (409)
..|...|++|+|||+|+.
T Consensus 106 ~vi~lvG~~GsGKTTl~~ 123 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLA 123 (296)
T ss_dssp SEEEEEESTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 356668999999999984
No 215
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=39.06 E-value=11 Score=40.66 Aligned_cols=21 Identities=38% Similarity=0.608 Sum_probs=19.5
Q ss_pred cCcceEEEeeccCCCCceeee
Q psy4062 165 EGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 165 ~G~N~tI~aYGqTGSGKTyTm 185 (409)
++.|.||+.-|.+|||||.+.
T Consensus 169 ~~~nQsIiisGESGAGKTe~t 189 (770)
T 1w9i_A 169 DRQNQSLLITGESGAGKTENT 189 (770)
T ss_dssp HCCCEEEEEECSTTSSHHHHH
T ss_pred hcCCcEEEEecCCCCcchHHH
Confidence 699999999999999999775
No 216
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=39.05 E-value=6.6 Score=40.25 Aligned_cols=16 Identities=44% Similarity=0.760 Sum_probs=14.5
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
.|+-||++|+|||+.+
T Consensus 66 GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLA 81 (499)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4899999999999876
No 217
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=38.96 E-value=7.8 Score=40.78 Aligned_cols=20 Identities=25% Similarity=0.444 Sum_probs=17.1
Q ss_pred cceEEEeeccCCCCceeeec
Q psy4062 167 YNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 167 ~N~tI~aYGqTGSGKTyTm~ 186 (409)
.++.++..|..|||||+||.
T Consensus 14 ~~~~~lV~AgaGSGKT~~l~ 33 (673)
T 1uaa_A 14 VTGPCLVLAGAGSGKTRVIT 33 (673)
T ss_dssp CSSEEEECCCTTSCHHHHHH
T ss_pred CCCCEEEEeCCCCChHHHHH
Confidence 35678888999999999996
No 218
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=38.57 E-value=11 Score=37.76 Aligned_cols=25 Identities=16% Similarity=0.060 Sum_probs=18.0
Q ss_pred HHHHhcCcceEEEeeccCCCCceeeec
Q psy4062 160 IASLLEGYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 160 V~~vl~G~N~tI~aYGqTGSGKTyTm~ 186 (409)
|+.+++|.+ ++..|+||||||.+..
T Consensus 122 i~~~~~~~~--~ll~~~tGsGKT~~~~ 146 (510)
T 2oca_A 122 VFEGLVNRR--RILNLPTSAGRSLIQA 146 (510)
T ss_dssp HHHHHHHSE--EEEECCSTTTHHHHHH
T ss_pred HHHHHhcCC--cEEEeCCCCCHHHHHH
Confidence 444555544 4778999999999864
No 219
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=38.49 E-value=7.5 Score=33.36 Aligned_cols=16 Identities=31% Similarity=0.538 Sum_probs=13.3
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
.+.-.|+.|||||..+
T Consensus 4 ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4566899999999875
No 220
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=38.33 E-value=10 Score=37.59 Aligned_cols=16 Identities=31% Similarity=0.318 Sum_probs=13.8
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
.++..|+||||||...
T Consensus 4 ~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 4 LTVLDLHPGAGKTRRV 19 (431)
T ss_dssp EEEEECCTTSCTTTTH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4688999999999884
No 221
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=38.29 E-value=12 Score=40.64 Aligned_cols=29 Identities=28% Similarity=0.391 Sum_probs=22.2
Q ss_pred HHHHHHHh-cCcceEEEeeccCCCCceeee
Q psy4062 157 KDIIASLL-EGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 157 ~plV~~vl-~G~N~tI~aYGqTGSGKTyTm 185 (409)
.....+++ ++.|.||+.-|.+|||||.+.
T Consensus 128 ~~Ay~~m~~~~~nQsIiiSGESGAGKTe~t 157 (784)
T 2v26_A 128 DKAFRDMKVLKLSQSIIVSGESGAGKTENT 157 (784)
T ss_dssp HHHHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHhcCCCcEEEEcCCCCCCceehH
Confidence 33334443 689999999999999999764
No 222
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=38.22 E-value=7.4 Score=42.27 Aligned_cols=51 Identities=22% Similarity=0.297 Sum_probs=30.7
Q ss_pred eEeeceEeCCCCCchhhhccchHHHHHH-Hhc----CcceEEEeeccCCCCceeee
Q psy4062 135 EFLFDRVYGPSESNQDVYDGSTKDIIAS-LLE----GYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 135 ~F~FD~VF~~~asQ~eVf~~~~~plV~~-vl~----G~N~tI~aYGqTGSGKTyTm 185 (409)
.+.||.+.+.+..-+.+.+.+..|+... +++ .....|+-||++|||||+.+
T Consensus 200 ~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 200 EVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp SCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 4677877776554444444433333221 222 12346899999999999766
No 223
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=38.16 E-value=7.5 Score=33.57 Aligned_cols=16 Identities=25% Similarity=0.476 Sum_probs=13.5
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
.|.-.|++|||||..+
T Consensus 8 ~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVR 23 (207)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5667899999999875
No 224
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=37.98 E-value=9 Score=34.15 Aligned_cols=16 Identities=25% Similarity=0.430 Sum_probs=9.2
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
.+.-.|++|||||..+
T Consensus 29 ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVA 44 (231)
T ss_dssp EEEEECSCC----CHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556899999999875
No 225
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=37.72 E-value=6.8 Score=38.13 Aligned_cols=20 Identities=40% Similarity=0.381 Sum_probs=14.9
Q ss_pred hcCcceEEEeeccCCCCceeee
Q psy4062 164 LEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 164 l~G~N~tI~aYGqTGSGKTyTm 185 (409)
-.|-+. .-.|+||||||.++
T Consensus 173 ~~G~~i--~ivG~sGsGKSTll 192 (361)
T 2gza_A 173 QLERVI--VVAGETGSGKTTLM 192 (361)
T ss_dssp HTTCCE--EEEESSSSCHHHHH
T ss_pred hcCCEE--EEECCCCCCHHHHH
Confidence 356544 45599999999987
No 226
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=37.61 E-value=8.6 Score=40.66 Aligned_cols=31 Identities=23% Similarity=0.307 Sum_probs=21.4
Q ss_pred CCCchhhhccchHHHHHHHhcCcceEEEeeccCCCCceeee
Q psy4062 145 SESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 145 ~asQ~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
..-|.+++. .+++|.| ++..|+||||||...
T Consensus 27 ~~~Q~~~i~--------~i~~~~~--~lv~apTGsGKT~~~ 57 (702)
T 2p6r_A 27 FPPQAEAVE--------KVFSGKN--LLLAMPTAAGKTLLA 57 (702)
T ss_dssp CCCCHHHHH--------HHTTCSC--EEEECSSHHHHHHHH
T ss_pred CHHHHHHHH--------HHhCCCc--EEEEcCCccHHHHHH
Confidence 345666554 3456665 577889999999765
No 227
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=37.50 E-value=28 Score=33.47 Aligned_cols=44 Identities=16% Similarity=0.096 Sum_probs=34.1
Q ss_pred ceeEeeceEeCCCC--CchhhhccchHHHHHHHh-cCcceEEEeeccC
Q psy4062 133 EMEFLFDRVYGPSE--SNQDVYDGSTKDIIASLL-EGYNCSVFVYGAT 177 (409)
Q Consensus 133 ~~~F~FD~VF~~~a--sQ~eVf~~~~~plV~~vl-~G~N~tI~aYGqT 177 (409)
...|.||+|+.... .++.+|+ -.+..++-++ .+.|+.|+.-|+.
T Consensus 91 ~~~y~FnRiIp~~~~~e~~~l~q-E~q~y~DmcL~~~~NfslIsis~~ 137 (333)
T 4etp_B 91 EHVYKFNRVIPHLKVSEDCFFTQ-EYSVYHDMALNQKKNFNLISLSTT 137 (333)
T ss_dssp CCEEECSEEEETTTCCHHHHHHH-TTHHHHHHHHHTTCCEEEEEEESS
T ss_pred cceEEEeeeechhhcchHHHHHH-HHHHHHHHHHccCCCeeEEEecCC
Confidence 34799999997665 3444555 4599999998 8999999999854
No 228
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=37.13 E-value=11 Score=34.44 Aligned_cols=15 Identities=40% Similarity=0.654 Sum_probs=12.8
Q ss_pred EEEeeccCCCCceee
Q psy4062 170 SVFVYGATGAGKTHT 184 (409)
Q Consensus 170 tI~aYGqTGSGKTyT 184 (409)
.|+..|.+|||||..
T Consensus 3 li~I~G~~GSGKSTl 17 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDM 17 (253)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 467899999999875
No 229
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=37.13 E-value=6.6 Score=37.78 Aligned_cols=19 Identities=47% Similarity=0.700 Sum_probs=15.0
Q ss_pred cCcceEEEeeccCCCCceeee
Q psy4062 165 EGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 165 ~G~N~tI~aYGqTGSGKTyTm 185 (409)
.|- .+.-.|+||||||.++
T Consensus 170 ~g~--~v~i~G~~GsGKTTll 188 (330)
T 2pt7_A 170 IGK--NVIVCGGTGSGKTTYI 188 (330)
T ss_dssp HTC--CEEEEESTTSCHHHHH
T ss_pred CCC--EEEEECCCCCCHHHHH
Confidence 455 4566799999999877
No 230
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=37.08 E-value=8.1 Score=33.94 Aligned_cols=16 Identities=25% Similarity=0.501 Sum_probs=13.0
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
.+.-.|++|||||..+
T Consensus 22 i~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVV 37 (207)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4455799999999876
No 231
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=36.91 E-value=9.1 Score=40.76 Aligned_cols=21 Identities=29% Similarity=0.400 Sum_probs=16.1
Q ss_pred HHhcCcceEEEeeccCCCCceee
Q psy4062 162 SLLEGYNCSVFVYGATGAGKTHT 184 (409)
Q Consensus 162 ~vl~G~N~tI~aYGqTGSGKTyT 184 (409)
..++|. .++..|+||||||+.
T Consensus 151 r~l~rk--~vlv~apTGSGKT~~ 171 (677)
T 3rc3_A 151 RAMQRK--IIFHSGPTNSGKTYH 171 (677)
T ss_dssp HTSCCE--EEEEECCTTSSHHHH
T ss_pred HhcCCC--EEEEEcCCCCCHHHH
Confidence 345664 468899999999984
No 232
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=36.66 E-value=16 Score=35.08 Aligned_cols=32 Identities=22% Similarity=0.244 Sum_probs=24.6
Q ss_pred chHHHHHHHhc-Cc--ceEEEeeccCCCCceeeec
Q psy4062 155 STKDIIASLLE-GY--NCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 155 ~~~plV~~vl~-G~--N~tI~aYGqTGSGKTyTm~ 186 (409)
++-+-+|.++. |+ ...+.-||.+|||||..+.
T Consensus 106 TG~~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~ 140 (343)
T 1v5w_A 106 TGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSH 140 (343)
T ss_dssp CSCHHHHHHTTSSBCSSEEEEEECCTTCTHHHHHH
T ss_pred cCChhHHHHhcCCCCCCeEEEEECCCCCCHHHHHH
Confidence 45567899996 44 3567889999999998763
No 233
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=36.64 E-value=11 Score=37.94 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=18.1
Q ss_pred CCccceEEEEEEeCCCCccccc
Q psy4062 30 PGEQSHMKVYIRVRPQSQKEED 51 (409)
Q Consensus 30 ~~~~s~~~v~~r~rp~~~~e~~ 51 (409)
......|.|+||+||+...|..
T Consensus 34 ~~~~~~vrV~vRvRP~~~~E~~ 55 (443)
T 2owm_A 34 KDPGANVRVVVRVRAFLPRELE 55 (443)
T ss_dssp CCCCEECEEEEEEECCCHHHHH
T ss_pred CCCCCCeEEEEEeCCCChHHhh
Confidence 4456799999999999988753
No 234
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=36.64 E-value=12 Score=40.76 Aligned_cols=21 Identities=38% Similarity=0.564 Sum_probs=19.5
Q ss_pred cCcceEEEeeccCCCCceeee
Q psy4062 165 EGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 165 ~G~N~tI~aYGqTGSGKTyTm 185 (409)
++.|.||+.-|.+|||||.+.
T Consensus 166 ~~~nQsIiiSGESGAGKTe~t 186 (837)
T 1kk8_A 166 DRENQSCLITGESGAGKTENT 186 (837)
T ss_dssp HTSEEEEEEECSTTSSHHHHH
T ss_pred cCCCcEEEEeCCCCCCchhhH
Confidence 689999999999999999874
No 235
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=36.54 E-value=15 Score=41.33 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=19.0
Q ss_pred HHHHHhcCcceEEEeeccCCCCceee
Q psy4062 159 IIASLLEGYNCSVFVYGATGAGKTHT 184 (409)
Q Consensus 159 lV~~vl~G~N~tI~aYGqTGSGKTyT 184 (409)
.+..+++|.| +++.++||||||..
T Consensus 86 ai~~il~g~d--vlv~ApTGSGKTl~ 109 (1104)
T 4ddu_A 86 WAKRIVQGKS--FTMVAPTGVGKTTF 109 (1104)
T ss_dssp HHHHHTTTCC--EEECCSTTCCHHHH
T ss_pred HHHHHHcCCC--EEEEeCCCCcHHHH
Confidence 4556778876 57888999999983
No 236
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=36.54 E-value=9.2 Score=40.55 Aligned_cols=31 Identities=26% Similarity=0.383 Sum_probs=20.8
Q ss_pred CCchhhhccchHHHHHHHhcCcceEEEeeccCCCCceeee
Q psy4062 146 ESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 146 asQ~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
.-|.+++... +.+|.| ++..|+||||||...
T Consensus 26 ~~Q~~~i~~~-------~~~~~~--~lv~apTGsGKT~~~ 56 (720)
T 2zj8_A 26 PPQAEALKSG-------ILEGKN--ALISIPTASGKTLIA 56 (720)
T ss_dssp HHHHHHHTTT-------GGGTCE--EEEECCGGGCHHHHH
T ss_pred HHHHHHHHHH-------hcCCCc--EEEEcCCccHHHHHH
Confidence 3466666542 344544 788999999999654
No 237
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=36.40 E-value=9.7 Score=32.27 Aligned_cols=16 Identities=38% Similarity=0.553 Sum_probs=13.6
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
.|+-.|..|||||...
T Consensus 5 ~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSS 20 (192)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788999999999754
No 238
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=36.38 E-value=9.7 Score=31.90 Aligned_cols=16 Identities=38% Similarity=0.706 Sum_probs=13.6
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
.|.-.|..|||||...
T Consensus 6 ~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4778999999999865
No 239
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=36.37 E-value=13 Score=41.81 Aligned_cols=24 Identities=38% Similarity=0.426 Sum_probs=18.8
Q ss_pred HHHHHhcCcceEEEeeccCCCCceee
Q psy4062 159 IIASLLEGYNCSVFVYGATGAGKTHT 184 (409)
Q Consensus 159 lV~~vl~G~N~tI~aYGqTGSGKTyT 184 (409)
.+..+++|.+ ++..|+||||||..
T Consensus 192 AI~~i~~g~d--vLV~ApTGSGKTlv 215 (1108)
T 3l9o_A 192 AISCIDRGES--VLVSAHTSAGKTVV 215 (1108)
T ss_dssp HHHHHTTTCC--EEEECCSSSHHHHH
T ss_pred HHHHHHcCCC--EEEECCCCCChHHH
Confidence 4556677866 58899999999965
No 240
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=36.00 E-value=15 Score=41.02 Aligned_cols=23 Identities=35% Similarity=0.388 Sum_probs=17.4
Q ss_pred HHHhcCcceEEEeeccCCCCceeee
Q psy4062 161 ASLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 161 ~~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
..+++|.+ ++..++||||||...
T Consensus 96 ~~l~~g~~--vLV~apTGSGKTlva 118 (1010)
T 2xgj_A 96 SCIDRGES--VLVSAHTSAGKTVVA 118 (1010)
T ss_dssp HHHHHTCE--EEEECCTTSCHHHHH
T ss_pred HHHHcCCC--EEEECCCCCChHHHH
Confidence 34566765 688899999999763
No 241
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=35.98 E-value=13 Score=39.19 Aligned_cols=20 Identities=40% Similarity=0.606 Sum_probs=15.5
Q ss_pred hcCcceEEEeeccCCCCceeee
Q psy4062 164 LEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 164 l~G~N~tI~aYGqTGSGKTyTm 185 (409)
.+|. .++..|+||||||...
T Consensus 44 ~~~~--~~lv~apTGsGKT~~~ 63 (715)
T 2va8_A 44 LEGN--RLLLTSPTGSGKTLIA 63 (715)
T ss_dssp TTTC--CEEEECCTTSCHHHHH
T ss_pred cCCC--cEEEEcCCCCcHHHHH
Confidence 3444 4688899999999875
No 242
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=35.92 E-value=13 Score=40.24 Aligned_cols=21 Identities=43% Similarity=0.596 Sum_probs=19.3
Q ss_pred cCcceEEEeeccCCCCceeee
Q psy4062 165 EGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 165 ~G~N~tI~aYGqTGSGKTyTm 185 (409)
++.|.||+.-|.+|||||.+.
T Consensus 153 ~~~nQsIiisGESGAGKTe~t 173 (795)
T 1w7j_A 153 DERNQSIIVSGESGAGKTVSA 173 (795)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred cCCCeEEEEeCCCCCCcchHH
Confidence 589999999999999999764
No 243
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=35.85 E-value=14 Score=34.51 Aligned_cols=18 Identities=22% Similarity=0.301 Sum_probs=15.8
Q ss_pred eEEEeeccCCCCceeeec
Q psy4062 169 CSVFVYGATGAGKTHTML 186 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm~ 186 (409)
..++-+|+.|+|||..+.
T Consensus 31 ~~v~i~G~~G~GKT~L~~ 48 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIK 48 (357)
T ss_dssp SEEEEEESTTSSHHHHHH
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 588999999999998763
No 244
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=35.72 E-value=14 Score=40.11 Aligned_cols=21 Identities=38% Similarity=0.575 Sum_probs=19.4
Q ss_pred cCcceEEEeeccCCCCceeee
Q psy4062 165 EGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 165 ~G~N~tI~aYGqTGSGKTyTm 185 (409)
++.|.||+.-|.+|||||.+.
T Consensus 168 ~~~nQsIiiSGESGAGKTe~t 188 (783)
T 4db1_A 168 DRENQSILITGESGAGKTVNT 188 (783)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred hCCCceEEEeCCCCCCCchHH
Confidence 699999999999999999864
No 245
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=35.68 E-value=12 Score=32.43 Aligned_cols=16 Identities=44% Similarity=0.621 Sum_probs=13.8
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
.|+-.|.+|||||...
T Consensus 27 ~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLG 42 (199)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5788999999999764
No 246
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=35.61 E-value=13 Score=41.47 Aligned_cols=21 Identities=38% Similarity=0.608 Sum_probs=19.5
Q ss_pred cCcceEEEeeccCCCCceeee
Q psy4062 165 EGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 165 ~G~N~tI~aYGqTGSGKTyTm 185 (409)
++.|.||+.-|.+|||||.+.
T Consensus 169 ~~~~QsIiisGESGAGKTe~~ 189 (1010)
T 1g8x_A 169 DRQNQSLLITGESGAGKTENT 189 (1010)
T ss_dssp HTCCEEEEEEESTTSSHHHHH
T ss_pred cCCCeEEEEeCCCCCCcchHH
Confidence 699999999999999999874
No 247
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=35.12 E-value=14 Score=41.17 Aligned_cols=21 Identities=33% Similarity=0.539 Sum_probs=19.4
Q ss_pred cCcceEEEeeccCCCCceeee
Q psy4062 165 EGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 165 ~G~N~tI~aYGqTGSGKTyTm 185 (409)
++.|.||+.-|.+|||||.+.
T Consensus 143 ~~~~QsIiisGESGAGKTe~~ 163 (995)
T 2ycu_A 143 DREDQSILCTGESGAGKTENT 163 (995)
T ss_dssp HCCCEEEEEECBTTSSHHHHH
T ss_pred cCCCcEEEecCCCCCCchhhH
Confidence 699999999999999999874
No 248
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=35.04 E-value=17 Score=34.23 Aligned_cols=31 Identities=29% Similarity=0.435 Sum_probs=24.6
Q ss_pred chHHHHHHHhc-Cc--ceEEEeeccCCCCceeee
Q psy4062 155 STKDIIASLLE-GY--NCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 155 ~~~plV~~vl~-G~--N~tI~aYGqTGSGKTyTm 185 (409)
++-+-+|.++. |+ ...++-||.+|||||..+
T Consensus 82 TG~~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la 115 (322)
T 2i1q_A 82 TSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIM 115 (322)
T ss_dssp CSCHHHHHHTTSSEETTEEEEEEESTTSSHHHHH
T ss_pred CCChhHHHhcCCCccCCeEEEEECCCCCCHHHHH
Confidence 45678899996 44 456888999999999765
No 249
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=35.00 E-value=12 Score=31.16 Aligned_cols=16 Identities=13% Similarity=0.106 Sum_probs=13.3
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
.|+-.|..|||||...
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677899999999764
No 250
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=34.75 E-value=15 Score=30.79 Aligned_cols=16 Identities=25% Similarity=0.576 Sum_probs=13.1
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
..+-+|++|||||..|
T Consensus 25 ~~~I~G~NGsGKStil 40 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLL 40 (149)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3467999999999765
No 251
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=34.60 E-value=7.2 Score=34.52 Aligned_cols=17 Identities=18% Similarity=0.389 Sum_probs=14.4
Q ss_pred EEEeeccCCCCceeeec
Q psy4062 170 SVFVYGATGAGKTHTML 186 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm~ 186 (409)
..+-||..|||||..+.
T Consensus 10 i~v~~G~mgsGKTT~ll 26 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELI 26 (191)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 56779999999998765
No 252
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=34.54 E-value=16 Score=34.65 Aligned_cols=31 Identities=26% Similarity=0.437 Sum_probs=24.1
Q ss_pred chHHHHHHHhcC-c--ceEEEeeccCCCCceeee
Q psy4062 155 STKDIIASLLEG-Y--NCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 155 ~~~plV~~vl~G-~--N~tI~aYGqTGSGKTyTm 185 (409)
++-+-+|.++.| + ...+.-||.+|||||..+
T Consensus 91 TG~~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la 124 (324)
T 2z43_A 91 TGSQALDGLLAGGIETRTMTEFFGEFGSGKTQLC 124 (324)
T ss_dssp CSCHHHHHHTTTSEETTSEEEEEESTTSSHHHHH
T ss_pred CCchhHHHhcCCCCCCCcEEEEECCCCCCHhHHH
Confidence 456778999964 3 356888999999999765
No 253
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=34.42 E-value=8.5 Score=33.85 Aligned_cols=16 Identities=44% Similarity=0.771 Sum_probs=13.5
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
.+.-.|+.|+|||.++
T Consensus 3 ~i~i~G~nG~GKTTll 18 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLI 18 (189)
T ss_dssp CEEEESCCSSCHHHHH
T ss_pred EEEEECCCCChHHHHH
Confidence 3567899999999887
No 254
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=34.36 E-value=18 Score=34.89 Aligned_cols=31 Identities=29% Similarity=0.458 Sum_probs=23.6
Q ss_pred chHHHHHHHhcC-c--ceEEEeeccCCCCceeee
Q psy4062 155 STKDIIASLLEG-Y--NCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 155 ~~~plV~~vl~G-~--N~tI~aYGqTGSGKTyTm 185 (409)
++-+-+|.+|.| + ...+.-+|+.|||||..+
T Consensus 115 TG~~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~ 148 (349)
T 1pzn_A 115 TGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLA 148 (349)
T ss_dssp CSCHHHHHHHTSSEESSEEEEEEESTTSSHHHHH
T ss_pred CCCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 455778888865 3 456778999999999765
No 255
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=34.20 E-value=9.4 Score=37.36 Aligned_cols=17 Identities=29% Similarity=0.722 Sum_probs=14.7
Q ss_pred eEEEeeccCCCCceeee
Q psy4062 169 CSVFVYGATGAGKTHTM 185 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm 185 (409)
..+.-.|++|||||.|+
T Consensus 158 ~vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSL 174 (359)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred eEEEEEcCCCChHHHHH
Confidence 35777999999999988
No 256
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=34.14 E-value=13 Score=37.13 Aligned_cols=21 Identities=33% Similarity=0.422 Sum_probs=16.2
Q ss_pred HhcCcceEEEeeccCCCCceeee
Q psy4062 163 LLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 163 vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
+++|.| ++..|+||||||...
T Consensus 5 l~~g~~--vlv~a~TGSGKT~~~ 25 (440)
T 1yks_A 5 LKKGMT--TVLDFHPGAGKTRRF 25 (440)
T ss_dssp TSTTCE--EEECCCTTSSTTTTH
T ss_pred hhCCCC--EEEEcCCCCCHHHHH
Confidence 345665 578899999999984
No 257
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=33.88 E-value=14 Score=41.85 Aligned_cols=21 Identities=33% Similarity=0.539 Sum_probs=19.4
Q ss_pred cCcceEEEeeccCCCCceeee
Q psy4062 165 EGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 165 ~G~N~tI~aYGqTGSGKTyTm 185 (409)
++.|.||+..|.+|||||.+.
T Consensus 166 ~~~~Q~i~isGeSGaGKTe~~ 186 (1184)
T 1i84_S 166 DREDQSILCTGESGAGKTENT 186 (1184)
T ss_dssp HTCCEEEECCCSTTSSTTHHH
T ss_pred cCCCcEEEEecCCCCCccHHH
Confidence 699999999999999999775
No 258
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=33.82 E-value=14 Score=37.01 Aligned_cols=15 Identities=27% Similarity=0.297 Sum_probs=13.0
Q ss_pred EEEeeccCCCCceee
Q psy4062 170 SVFVYGATGAGKTHT 184 (409)
Q Consensus 170 tI~aYGqTGSGKTyT 184 (409)
-++..++||||||..
T Consensus 23 ~vlv~a~TGsGKT~~ 37 (459)
T 2z83_A 23 MTVLDLHPGSGKTRK 37 (459)
T ss_dssp EEEECCCTTSCTTTT
T ss_pred cEEEECCCCCCHHHH
Confidence 457889999999987
No 259
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=33.61 E-value=9.2 Score=34.11 Aligned_cols=15 Identities=27% Similarity=0.649 Sum_probs=12.3
Q ss_pred EEeeccCCCCceeee
Q psy4062 171 VFVYGATGAGKTHTM 185 (409)
Q Consensus 171 I~aYGqTGSGKTyTm 185 (409)
+.-.|++|||||..+
T Consensus 26 ~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 26 LVICGPSGVGKGTLI 40 (218)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 455799999999876
No 260
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=33.58 E-value=9.1 Score=39.96 Aligned_cols=18 Identities=33% Similarity=0.480 Sum_probs=15.3
Q ss_pred eEEEeeccCCCCceeeec
Q psy4062 169 CSVFVYGATGAGKTHTML 186 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm~ 186 (409)
.-++..|.||||||..+.
T Consensus 215 pHlLIaG~TGSGKS~~L~ 232 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVN 232 (574)
T ss_dssp CCEEEECCTTSSHHHHHH
T ss_pred CeeEEECCCCCCHHHHHH
Confidence 457899999999998863
No 261
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=33.40 E-value=10 Score=36.23 Aligned_cols=18 Identities=33% Similarity=0.516 Sum_probs=15.2
Q ss_pred eEEEeeccCCCCceeeec
Q psy4062 169 CSVFVYGATGAGKTHTML 186 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm~ 186 (409)
..|+-.|++|+|||.|+.
T Consensus 105 ~vi~ivG~~GsGKTTl~~ 122 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCG 122 (306)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred eEEEEEcCCCChHHHHHH
Confidence 467789999999999873
No 262
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=33.40 E-value=12 Score=32.19 Aligned_cols=16 Identities=31% Similarity=0.677 Sum_probs=13.7
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
.|+-.|..|||||+..
T Consensus 12 ~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 12 NILITGTPGTGKTSMA 27 (184)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999763
No 263
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=33.34 E-value=14 Score=31.36 Aligned_cols=16 Identities=31% Similarity=0.470 Sum_probs=13.5
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
...-+|++|||||..+
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 5577999999999765
No 264
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=33.29 E-value=11 Score=32.01 Aligned_cols=17 Identities=29% Similarity=0.399 Sum_probs=14.2
Q ss_pred eEEEeeccCCCCceeee
Q psy4062 169 CSVFVYGATGAGKTHTM 185 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm 185 (409)
..|+..|..|||||+..
T Consensus 6 ~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLS 22 (193)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46788999999999854
No 265
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=33.23 E-value=16 Score=41.17 Aligned_cols=21 Identities=43% Similarity=0.596 Sum_probs=19.3
Q ss_pred cCcceEEEeeccCCCCceeee
Q psy4062 165 EGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 165 ~G~N~tI~aYGqTGSGKTyTm 185 (409)
++.|.||+.-|.+|||||.+.
T Consensus 153 ~~~~QsIiisGESGAGKTe~~ 173 (1080)
T 2dfs_A 153 DERNQSIIVSGESGAGKTVSA 173 (1080)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred cCCCcEEEEcCCCCCCccchH
Confidence 689999999999999999764
No 266
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=33.22 E-value=16 Score=41.00 Aligned_cols=35 Identities=26% Similarity=0.395 Sum_probs=25.6
Q ss_pred hhhccchHHHHHHHh-cCcceEEEeeccCCCCceeee
Q psy4062 150 DVYDGSTKDIIASLL-EGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 150 eVf~~~~~plV~~vl-~G~N~tI~aYGqTGSGKTyTm 185 (409)
.||. ++.....+++ ++.|-||+.-|.+|||||.+.
T Consensus 126 HIfa-iA~~AY~~M~~~~~nQsIiiSGESGAGKTest 161 (1052)
T 4anj_A 126 HVFA-IADKAFRDMKVLKLSQSIIVSGESGAGKTENT 161 (1052)
T ss_dssp CHHH-HHHHHHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred cHHH-HHHHHHHHHHHhCCCceEEEecCCCCCHHHHH
Confidence 3554 3344444444 699999999999999999875
No 267
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=33.19 E-value=15 Score=33.88 Aligned_cols=22 Identities=27% Similarity=0.614 Sum_probs=17.1
Q ss_pred hcCcceEEEeeccCCCCceeee
Q psy4062 164 LEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 164 l~G~N~tI~aYGqTGSGKTyTm 185 (409)
-.|+...|+..|.+|+|||..+
T Consensus 4 ~~g~~~~I~vvG~~g~GKSTLi 25 (274)
T 3t5d_A 4 GSGFEFTLMVVGESGLGKSTLI 25 (274)
T ss_dssp ---CEEEEEEEECTTSSHHHHH
T ss_pred cCccEEEEEEECCCCCCHHHHH
Confidence 3588899999999999999654
No 268
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=33.16 E-value=14 Score=31.57 Aligned_cols=20 Identities=20% Similarity=0.263 Sum_probs=15.7
Q ss_pred CcceEEEeeccCCCCceeee
Q psy4062 166 GYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 166 G~N~tI~aYGqTGSGKTyTm 185 (409)
+..-.|.-.|..|||||...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVA 25 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHH
T ss_pred cCceEEEEECCCCCCHHHHH
Confidence 34456888999999999764
No 269
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=32.97 E-value=13 Score=31.49 Aligned_cols=16 Identities=50% Similarity=0.760 Sum_probs=13.5
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
.|+-.|..|||||...
T Consensus 5 ~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQC 20 (196)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788999999999753
No 270
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=32.76 E-value=21 Score=40.28 Aligned_cols=26 Identities=23% Similarity=0.442 Sum_probs=19.4
Q ss_pred HHHHHhcCcceEEEeeccCCCCceee
Q psy4062 159 IIASLLEGYNCSVFVYGATGAGKTHT 184 (409)
Q Consensus 159 lV~~vl~G~N~tI~aYGqTGSGKTyT 184 (409)
++.++-.|...-++..|+||||||..
T Consensus 615 il~~~~~g~p~d~ll~~~TGsGKT~v 640 (1151)
T 2eyq_A 615 VLSDMCQPLAMDRLVCGDVGFGKTEV 640 (1151)
T ss_dssp HHHHHHSSSCCEEEEECCCCTTTHHH
T ss_pred HHHHHhcCCcCcEEEECCCCCCHHHH
Confidence 44444457766789999999999965
No 271
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=32.30 E-value=12 Score=33.16 Aligned_cols=16 Identities=38% Similarity=0.650 Sum_probs=13.6
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
-.+-.|..|||||+.+
T Consensus 7 i~l~tG~pGsGKT~~a 22 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKM 22 (199)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEeCCCCCHHHHH
Confidence 3577999999999976
No 272
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=32.29 E-value=13 Score=32.84 Aligned_cols=28 Identities=36% Similarity=0.601 Sum_probs=19.8
Q ss_pred HHHHHHhc-Cc--ceEEEeeccCCCCceeee
Q psy4062 158 DIIASLLE-GY--NCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 158 plV~~vl~-G~--N~tI~aYGqTGSGKTyTm 185 (409)
+-+|.++. |+ ...++-+|.+|+|||.-+
T Consensus 17 ~~LD~~l~GGl~~G~l~~i~G~pG~GKT~l~ 47 (251)
T 2zts_A 17 PGFDELIEGGFPEGTTVLLTGGTGTGKTTFA 47 (251)
T ss_dssp TTTGGGTTTSEETTCEEEEECCTTSSHHHHH
T ss_pred HHHHHhhcCCCCCCeEEEEEeCCCCCHHHHH
Confidence 34566665 44 456788999999999643
No 273
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=32.26 E-value=13 Score=31.12 Aligned_cols=16 Identities=38% Similarity=0.642 Sum_probs=13.3
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
.|+-.|..|||||...
T Consensus 4 ~I~l~G~~GsGKsT~a 19 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVG 19 (173)
T ss_dssp CEEEESCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4778999999999754
No 274
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=32.24 E-value=17 Score=34.53 Aligned_cols=28 Identities=18% Similarity=0.396 Sum_probs=20.2
Q ss_pred HHHHHHhcCc-ceEEEeeccCCCCceeee
Q psy4062 158 DIIASLLEGY-NCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 158 plV~~vl~G~-N~tI~aYGqTGSGKTyTm 185 (409)
.+...+-.|. .-.++-||+.|+|||.+.
T Consensus 13 ~l~~~i~~~~~~~a~L~~G~~G~GKt~~a 41 (334)
T 1a5t_A 13 KLVASYQAGRGHHALLIQALPGMGDDALI 41 (334)
T ss_dssp HHHHHHHTTCCCSEEEEECCTTSCHHHHH
T ss_pred HHHHHHHcCCcceeEEEECCCCchHHHHH
Confidence 3444444554 456899999999999875
No 275
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=32.16 E-value=15 Score=38.77 Aligned_cols=47 Identities=28% Similarity=0.453 Sum_probs=34.1
Q ss_pred EeeceEeCCCCCchhhhccchHHHHHHHhcCcceEEEeeccCCCCceeeecC
Q psy4062 136 FLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLG 187 (409)
Q Consensus 136 F~FD~VF~~~asQ~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G 187 (409)
|..-.=|.|...|..-++. +++.+-+|... ....|.|||||||+|..
T Consensus 5 ~~~~~~~~p~~~Q~~~i~~----l~~~~~~~~~~-~~l~g~~gs~k~~~~a~ 51 (661)
T 2d7d_A 5 FELVSKYQPQGDQPKAIEK----LVKGIQEGKKH-QTLLGATGTGKTFTVSN 51 (661)
T ss_dssp CCCCCSCCCCTTHHHHHHH----HHHHHHTTCSE-EEEEECTTSCHHHHHHH
T ss_pred ceeecCCCCCCCCHHHHHH----HHHHHhcCCCc-EEEECcCCcHHHHHHHH
Confidence 5555667889999887653 56666677532 34569999999999963
No 276
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=32.13 E-value=14 Score=32.19 Aligned_cols=16 Identities=31% Similarity=0.623 Sum_probs=13.0
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
.|+..|++|||||..+
T Consensus 14 ~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677899999999754
No 277
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=31.96 E-value=14 Score=31.35 Aligned_cols=16 Identities=38% Similarity=0.611 Sum_probs=13.6
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
.|+-.|..|||||...
T Consensus 6 ~I~l~G~~GsGKST~~ 21 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQA 21 (186)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788999999999764
No 278
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=31.92 E-value=11 Score=38.88 Aligned_cols=18 Identities=28% Similarity=0.370 Sum_probs=15.2
Q ss_pred ceEEEeeccCCCCceeee
Q psy4062 168 NCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 168 N~tI~aYGqTGSGKTyTm 185 (409)
...++-||++|+|||+.+
T Consensus 108 g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp SCEEEEESSSSSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 346888999999999875
No 279
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=31.80 E-value=22 Score=30.80 Aligned_cols=19 Identities=32% Similarity=0.712 Sum_probs=14.8
Q ss_pred cceEEEeeccCCCCceeee
Q psy4062 167 YNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 167 ~N~tI~aYGqTGSGKTyTm 185 (409)
-...|.-.|.+|||||..+
T Consensus 24 ~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3456777899999999764
No 280
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=31.79 E-value=22 Score=34.65 Aligned_cols=20 Identities=40% Similarity=0.707 Sum_probs=16.7
Q ss_pred ccceEEEEEEeCCCCccccc
Q psy4062 32 EQSHMKVYIRVRPQSQKEED 51 (409)
Q Consensus 32 ~~s~~~v~~r~rp~~~~e~~ 51 (409)
+...|+|+||+||+...|..
T Consensus 2 e~~~i~V~vRvRP~~~~E~~ 21 (349)
T 1t5c_A 2 EEGAVAVCVRVRPLNSREES 21 (349)
T ss_dssp -CCCEEEEEEECCCSCSSCT
T ss_pred CCCCEEEEEECCCCChhhhc
Confidence 46789999999999988863
No 281
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=31.75 E-value=14 Score=33.37 Aligned_cols=19 Identities=37% Similarity=0.732 Sum_probs=15.3
Q ss_pred cceEEEeeccCCCCceeee
Q psy4062 167 YNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 167 ~N~tI~aYGqTGSGKTyTm 185 (409)
+...|+-.|+||+|||...
T Consensus 33 ~g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETA 51 (205)
T ss_dssp TTEEEEEECCCTTTTHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 4456889999999998654
No 282
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=31.00 E-value=24 Score=34.57 Aligned_cols=21 Identities=29% Similarity=0.661 Sum_probs=17.8
Q ss_pred cCcceEEEeeccCCCCceeee
Q psy4062 165 EGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 165 ~G~N~tI~aYGqTGSGKTyTm 185 (409)
.|.-..|+-+|..|+|||...
T Consensus 21 ~g~~~~i~l~G~~G~GKTTl~ 41 (359)
T 2ga8_A 21 DNYRVCVILVGSPGSGKSTIA 41 (359)
T ss_dssp TCSCEEEEEECCTTSSHHHHH
T ss_pred cCCeeEEEEECCCCCcHHHHH
Confidence 566677889999999999876
No 283
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=30.72 E-value=16 Score=35.45 Aligned_cols=16 Identities=38% Similarity=0.611 Sum_probs=13.7
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
.|+-.|+||||||..-
T Consensus 42 lIvI~GPTgsGKTtLa 57 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLS 57 (339)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 6888999999999753
No 284
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=30.55 E-value=14 Score=37.81 Aligned_cols=17 Identities=35% Similarity=0.681 Sum_probs=14.5
Q ss_pred eEEEeeccCCCCceeee
Q psy4062 169 CSVFVYGATGAGKTHTM 185 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm 185 (409)
..|.-.|.+|||||.++
T Consensus 294 eVI~LVGpNGSGKTTLl 310 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTI 310 (503)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCcccHHHHH
Confidence 35677899999999987
No 285
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=30.52 E-value=17 Score=35.37 Aligned_cols=18 Identities=44% Similarity=0.820 Sum_probs=15.2
Q ss_pred ceEEEEEEeCCCCccccc
Q psy4062 34 SHMKVYIRVRPQSQKEED 51 (409)
Q Consensus 34 s~~~v~~r~rp~~~~e~~ 51 (409)
|.|+|+||+||+...|.+
T Consensus 1 S~VkV~vRvRPl~~~E~~ 18 (354)
T 3gbj_A 1 SKVKVAVRIRPMNRRETD 18 (354)
T ss_dssp -CEEEEEEECCCCHHHHH
T ss_pred CCcEEEEECCCCChhhhc
Confidence 569999999999988864
No 286
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=30.24 E-value=14 Score=31.30 Aligned_cols=15 Identities=27% Similarity=0.547 Sum_probs=12.8
Q ss_pred EEEeeccCCCCceee
Q psy4062 170 SVFVYGATGAGKTHT 184 (409)
Q Consensus 170 tI~aYGqTGSGKTyT 184 (409)
.|+-.|..|||||..
T Consensus 4 ~I~l~G~~GsGKsT~ 18 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTI 18 (184)
T ss_dssp SEEEECSTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 377889999999975
No 287
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=30.10 E-value=15 Score=31.02 Aligned_cols=17 Identities=41% Similarity=0.686 Sum_probs=10.0
Q ss_pred eEEEeeccCCCCceeee
Q psy4062 169 CSVFVYGATGAGKTHTM 185 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm 185 (409)
..|+-.|..|||||...
T Consensus 6 ~~I~l~G~~GsGKST~a 22 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTA 22 (183)
T ss_dssp CEEEEECCC----CHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35788999999999754
No 288
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=30.04 E-value=18 Score=38.94 Aligned_cols=15 Identities=40% Similarity=0.616 Sum_probs=12.7
Q ss_pred EEEeeccCCCCceee
Q psy4062 170 SVFVYGATGAGKTHT 184 (409)
Q Consensus 170 tI~aYGqTGSGKTyT 184 (409)
.++..|+||||||..
T Consensus 111 ~vii~gpTGSGKTtl 125 (773)
T 2xau_A 111 IMVFVGETGSGKTTQ 125 (773)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 467789999999993
No 289
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=29.93 E-value=17 Score=35.03 Aligned_cols=16 Identities=44% Similarity=0.696 Sum_probs=13.7
Q ss_pred eEEEeeccCCCCceee
Q psy4062 169 CSVFVYGATGAGKTHT 184 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyT 184 (409)
-.|+-.|+||||||..
T Consensus 6 ~~i~i~GptGsGKTtl 21 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDL 21 (323)
T ss_dssp EEEEEECCTTSCHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 3688899999999975
No 290
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=29.81 E-value=12 Score=38.62 Aligned_cols=17 Identities=29% Similarity=0.497 Sum_probs=14.2
Q ss_pred eEEEeeccCCCCceeee
Q psy4062 169 CSVFVYGATGAGKTHTM 185 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm 185 (409)
.-++..|.||||||..+
T Consensus 168 pHlLIaG~TGSGKSt~L 184 (512)
T 2ius_A 168 PHLLVAGTTGSGASVGV 184 (512)
T ss_dssp CSEEEECCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45688999999999865
No 291
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=29.77 E-value=16 Score=32.15 Aligned_cols=14 Identities=29% Similarity=0.619 Sum_probs=12.0
Q ss_pred EEeeccCCCCceee
Q psy4062 171 VFVYGATGAGKTHT 184 (409)
Q Consensus 171 I~aYGqTGSGKTyT 184 (409)
++.+|.+|||||.-
T Consensus 2 ilV~Gg~~SGKS~~ 15 (180)
T 1c9k_A 2 ILVTGGARSGKSRH 15 (180)
T ss_dssp EEEEECTTSSHHHH
T ss_pred EEEECCCCCcHHHH
Confidence 68899999999853
No 292
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=29.73 E-value=15 Score=31.06 Aligned_cols=16 Identities=25% Similarity=0.499 Sum_probs=13.0
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
.|+-.|..|||||...
T Consensus 6 ~i~i~G~~GsGKsTla 21 (175)
T 1via_A 6 NIVFIGFMGSGKSTLA 21 (175)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 3677899999999763
No 293
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=29.70 E-value=14 Score=31.24 Aligned_cols=16 Identities=31% Similarity=0.497 Sum_probs=13.3
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
.|+-.|..|||||...
T Consensus 3 ~I~i~G~~GsGKsT~~ 18 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778999999999754
No 294
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=29.50 E-value=22 Score=29.56 Aligned_cols=27 Identities=26% Similarity=0.496 Sum_probs=19.4
Q ss_pred HHHHHhc-CcceEEEeeccCCCCceeee
Q psy4062 159 IIASLLE-GYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 159 lV~~vl~-G~N~tI~aYGqTGSGKTyTm 185 (409)
+++.++. -....|...|..|+|||..+
T Consensus 8 ~~~~~~~~~~~~~i~v~G~~~~GKssli 35 (183)
T 1moz_A 8 MFDKLWGSNKELRILILGLDGAGKTTIL 35 (183)
T ss_dssp HHGGGTTCSSCEEEEEEEETTSSHHHHH
T ss_pred HHHHhcCCCCccEEEEECCCCCCHHHHH
Confidence 3444444 45667889999999999654
No 295
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=29.49 E-value=15 Score=31.84 Aligned_cols=17 Identities=35% Similarity=0.591 Sum_probs=14.1
Q ss_pred eEEEeeccCCCCceeee
Q psy4062 169 CSVFVYGATGAGKTHTM 185 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm 185 (409)
..|+-.|..|||||...
T Consensus 19 ~~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVG 35 (202)
T ss_dssp SCEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35788999999999864
No 296
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=29.48 E-value=15 Score=31.28 Aligned_cols=16 Identities=31% Similarity=0.690 Sum_probs=13.5
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
.|+-.|..|||||+..
T Consensus 14 ~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQC 29 (199)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788999999999754
No 297
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=29.34 E-value=13 Score=31.66 Aligned_cols=17 Identities=41% Similarity=0.599 Sum_probs=13.9
Q ss_pred eEEEeeccCCCCceeee
Q psy4062 169 CSVFVYGATGAGKTHTM 185 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm 185 (409)
..+.-.|+.|||||..+
T Consensus 34 e~v~L~G~nGaGKTTLl 50 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLT 50 (158)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 35667899999999876
No 298
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=29.27 E-value=13 Score=39.73 Aligned_cols=19 Identities=21% Similarity=0.522 Sum_probs=16.0
Q ss_pred ceEEEeeccCCCCceeeec
Q psy4062 168 NCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 168 N~tI~aYGqTGSGKTyTm~ 186 (409)
++.++..|..|||||++|.
T Consensus 24 ~g~~lV~AgAGSGKT~vL~ 42 (724)
T 1pjr_A 24 EGPLLIMAGAGSGKTRVLT 42 (724)
T ss_dssp SSCEEEEECTTSCHHHHHH
T ss_pred CCCEEEEEcCCCCHHHHHH
Confidence 4567788899999999985
No 299
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=29.18 E-value=12 Score=32.46 Aligned_cols=16 Identities=31% Similarity=0.397 Sum_probs=13.0
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
.|.-.|++|||||..+
T Consensus 8 ~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 8 VIGIAGGTASGKTTLA 23 (211)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556899999999875
No 300
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=29.00 E-value=11 Score=42.25 Aligned_cols=16 Identities=38% Similarity=0.665 Sum_probs=13.2
Q ss_pred EEeeccCCCCceeeec
Q psy4062 171 VFVYGATGAGKTHTML 186 (409)
Q Consensus 171 I~aYGqTGSGKTyTm~ 186 (409)
.+...+||||||.||+
T Consensus 303 gli~~~TGSGKT~t~~ 318 (1038)
T 2w00_A 303 GYIWHTTGSGKTLTSF 318 (1038)
T ss_dssp EEEEECTTSSHHHHHH
T ss_pred EEEEecCCCCHHHHHH
Confidence 4566799999999985
No 301
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=28.98 E-value=19 Score=30.21 Aligned_cols=17 Identities=24% Similarity=0.456 Sum_probs=13.9
Q ss_pred eEEEeeccCCCCceeee
Q psy4062 169 CSVFVYGATGAGKTHTM 185 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm 185 (409)
..|+-.|..|||||..+
T Consensus 9 ~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp EEEEEECSTTSCHHHHH
T ss_pred cEEEEEcCCCCCHHHHH
Confidence 35777899999999864
No 302
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=28.93 E-value=15 Score=30.45 Aligned_cols=16 Identities=19% Similarity=0.405 Sum_probs=13.1
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
.|+-.|..|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVG 17 (168)
T ss_dssp EEEEESCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4778999999999753
No 303
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=28.86 E-value=23 Score=34.28 Aligned_cols=31 Identities=23% Similarity=0.344 Sum_probs=24.6
Q ss_pred chHHHHHHHhc--Cc--ceEEEeeccCCCCceeee
Q psy4062 155 STKDIIASLLE--GY--NCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 155 ~~~plV~~vl~--G~--N~tI~aYGqTGSGKTyTm 185 (409)
++-+-+|.++. |+ ...+.-||..|||||..+
T Consensus 44 TG~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLa 78 (349)
T 2zr9_A 44 TGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVA 78 (349)
T ss_dssp CSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHH
T ss_pred cCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHH
Confidence 56678889988 54 456888999999999875
No 304
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=28.78 E-value=18 Score=34.75 Aligned_cols=17 Identities=35% Similarity=0.599 Sum_probs=13.6
Q ss_pred eEEEeeccCCCCceeee
Q psy4062 169 CSVFVYGATGAGKTHTM 185 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm 185 (409)
-.|+..|+||||||...
T Consensus 11 ~~i~i~GptgsGKt~la 27 (316)
T 3foz_A 11 KAIFLMGPTASGKTALA 27 (316)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCccCHHHHH
Confidence 35778999999999654
No 305
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=28.70 E-value=21 Score=35.85 Aligned_cols=18 Identities=33% Similarity=0.493 Sum_probs=14.8
Q ss_pred eEEEeeccCCCCceeeec
Q psy4062 169 CSVFVYGATGAGKTHTML 186 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm~ 186 (409)
..|+..|.+|+|||.|+.
T Consensus 98 ~vI~lvG~~GsGKTTt~~ 115 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAG 115 (433)
T ss_dssp EEEEECCCTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 456677999999999974
No 306
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=28.68 E-value=15 Score=37.00 Aligned_cols=17 Identities=35% Similarity=0.620 Sum_probs=14.6
Q ss_pred eEEEeeccCCCCceeee
Q psy4062 169 CSVFVYGATGAGKTHTM 185 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm 185 (409)
..|+-||++|+|||+..
T Consensus 51 ~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 45899999999999865
No 307
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=28.62 E-value=13 Score=33.38 Aligned_cols=17 Identities=24% Similarity=0.468 Sum_probs=14.5
Q ss_pred eEEEeeccCCCCceeee
Q psy4062 169 CSVFVYGATGAGKTHTM 185 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm 185 (409)
..|+-.|..|||||..+
T Consensus 28 ~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 46788999999999876
No 308
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=27.94 E-value=16 Score=31.45 Aligned_cols=17 Identities=41% Similarity=0.712 Sum_probs=13.9
Q ss_pred eEEEeeccCCCCceeee
Q psy4062 169 CSVFVYGATGAGKTHTM 185 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm 185 (409)
-.|+-.|..|||||+..
T Consensus 16 ~~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35788999999999754
No 309
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=27.93 E-value=16 Score=32.44 Aligned_cols=16 Identities=31% Similarity=0.557 Sum_probs=13.6
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
.|+-.|..|||||...
T Consensus 9 ~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 9 RAVIMGAPGSGKGTVS 24 (227)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788999999999764
No 310
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=27.84 E-value=16 Score=30.86 Aligned_cols=16 Identities=44% Similarity=0.733 Sum_probs=13.4
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
.|+-.|..|||||...
T Consensus 8 ~I~l~G~~GsGKsT~~ 23 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQC 23 (194)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5778899999999853
No 311
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=27.80 E-value=26 Score=35.90 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=18.3
Q ss_pred HHHHHHhcCcceEEEeeccCCCCceeee
Q psy4062 158 DIIASLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 158 plV~~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
.+.+.+.+|.++ ++-.+||+|||.+.
T Consensus 14 ~v~~~l~~~~~~--~~~a~TGtGKT~~~ 39 (551)
T 3crv_A 14 KVIEGLRNNFLV--ALNAPTGSGKTLFS 39 (551)
T ss_dssp HHHHHHHTTCEE--EEECCTTSSHHHHH
T ss_pred HHHHHHHcCCcE--EEECCCCccHHHHH
Confidence 344556678654 55668999999875
No 312
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=27.75 E-value=18 Score=37.71 Aligned_cols=28 Identities=21% Similarity=0.243 Sum_probs=20.1
Q ss_pred HHHHHHHhcCcceEEEeeccCCCCceeeec
Q psy4062 157 KDIIASLLEGYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 157 ~plV~~vl~G~N~tI~aYGqTGSGKTyTm~ 186 (409)
..+-..+-.|. .++-+|++|+|||..+.
T Consensus 51 ~~l~~~i~~g~--~vll~Gp~GtGKTtlar 78 (604)
T 3k1j_A 51 EVIKTAANQKR--HVLLIGEPGTGKSMLGQ 78 (604)
T ss_dssp HHHHHHHHTTC--CEEEECCTTSSHHHHHH
T ss_pred hhccccccCCC--EEEEEeCCCCCHHHHHH
Confidence 44444455663 67889999999998873
No 313
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=27.75 E-value=21 Score=37.94 Aligned_cols=17 Identities=24% Similarity=0.393 Sum_probs=13.8
Q ss_pred EEEeeccCCCCceeeec
Q psy4062 170 SVFVYGATGAGKTHTML 186 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm~ 186 (409)
.++..|+||||||+.+.
T Consensus 234 ~vlv~ApTGSGKT~a~~ 250 (666)
T 3o8b_A 234 VAHLHAPTGSGKSTKVP 250 (666)
T ss_dssp EEEEECCTTSCTTTHHH
T ss_pred eEEEEeCCchhHHHHHH
Confidence 46889999999997653
No 314
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=27.53 E-value=31 Score=32.64 Aligned_cols=30 Identities=7% Similarity=0.035 Sum_probs=21.5
Q ss_pred hHHHHHHHhcCcceEEEeeccCCCCceeee
Q psy4062 156 TKDIIASLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 156 ~~plV~~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
+..+-..+-.|..-.++-||+.|+|||.+.
T Consensus 6 ~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a 35 (305)
T 2gno_A 6 LETLKRIIEKSEGISILINGEDLSYPREVS 35 (305)
T ss_dssp HHHHHHHHHTCSSEEEEEECSSSSHHHHHH
T ss_pred HHHHHHHHHCCCCcEEEEECCCCCCHHHHH
Confidence 344444555666557888999999998765
No 315
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=27.52 E-value=18 Score=33.05 Aligned_cols=17 Identities=24% Similarity=0.405 Sum_probs=14.3
Q ss_pred eEEEeeccCCCCceeee
Q psy4062 169 CSVFVYGATGAGKTHTM 185 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm 185 (409)
..|+..|..|||||+..
T Consensus 5 ~lIvl~G~pGSGKSTla 21 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFS 21 (260)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred EEEEEEcCCCCCHHHHH
Confidence 46888999999999864
No 316
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=27.46 E-value=28 Score=34.44 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=19.0
Q ss_pred CCCccceEEEEEEeCCCCccccc
Q psy4062 29 TPGEQSHMKVYIRVRPQSQKEED 51 (409)
Q Consensus 29 ~~~~~s~~~v~~r~rp~~~~e~~ 51 (409)
.+.+...|.|+||+||+...|..
T Consensus 46 ~~~~~~~I~V~vRvRP~~~~E~~ 68 (387)
T 2heh_A 46 DPIEEHRICVCVRKRPLNKQELA 68 (387)
T ss_dssp SCCCCCSEEEEEEECCCCHHHHH
T ss_pred CCCCCCCeEEEEECCCCChHHhc
Confidence 34568899999999999988764
No 317
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=27.33 E-value=15 Score=33.38 Aligned_cols=16 Identities=31% Similarity=0.625 Sum_probs=13.1
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
.+.-.|++|||||..|
T Consensus 33 ~~~iiG~nGsGKSTLl 48 (235)
T 3tif_A 33 FVSIMGPSGSGKSTML 48 (235)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4566899999999765
No 318
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=27.31 E-value=19 Score=34.78 Aligned_cols=16 Identities=44% Similarity=0.522 Sum_probs=13.1
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
.|+..|+||||||...
T Consensus 5 ~i~i~GptgsGKt~la 20 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTS 20 (322)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCcCCHHHHH
Confidence 4677899999999654
No 319
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=27.06 E-value=18 Score=30.75 Aligned_cols=16 Identities=38% Similarity=0.688 Sum_probs=13.5
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
.|+-.|..|||||...
T Consensus 11 ~I~l~G~~GsGKsT~~ 26 (196)
T 2c95_A 11 IIFVVGGPGSGKGTQC 26 (196)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5778999999999753
No 320
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=27.02 E-value=15 Score=35.17 Aligned_cols=17 Identities=29% Similarity=0.591 Sum_probs=14.2
Q ss_pred EEEeeccCCCCceeeec
Q psy4062 170 SVFVYGATGAGKTHTML 186 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm~ 186 (409)
.|.-.|++|+|||.|+.
T Consensus 107 vI~ivG~~G~GKTT~~~ 123 (320)
T 1zu4_A 107 IFMLVGVNGTGKTTSLA 123 (320)
T ss_dssp EEEEESSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 56667999999999874
No 321
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=26.91 E-value=20 Score=34.71 Aligned_cols=18 Identities=33% Similarity=0.348 Sum_probs=14.4
Q ss_pred eEEEeeccCCCCceeeec
Q psy4062 169 CSVFVYGATGAGKTHTML 186 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm~ 186 (409)
..++-||++|+|||+-..
T Consensus 124 sviLI~GpPGsGKTtLAl 141 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVH 141 (331)
T ss_dssp EEEEEECSCSSSHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHH
Confidence 346789999999998653
No 322
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=26.68 E-value=20 Score=30.43 Aligned_cols=17 Identities=35% Similarity=0.563 Sum_probs=13.9
Q ss_pred eEEEeeccCCCCceeee
Q psy4062 169 CSVFVYGATGAGKTHTM 185 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm 185 (409)
..|+-.|..|||||...
T Consensus 14 ~~i~l~G~~GsGKsT~~ 30 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIA 30 (186)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred cEEEEEcCCCCCHHHHH
Confidence 45777999999999854
No 323
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=26.50 E-value=18 Score=31.80 Aligned_cols=16 Identities=31% Similarity=0.549 Sum_probs=13.3
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
.|+-.|..|||||+-.
T Consensus 6 ~I~l~G~~GsGKsT~a 21 (220)
T 1aky_A 6 RMVLIGPPGAGKGTQA 21 (220)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788999999998753
No 324
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=26.46 E-value=20 Score=34.93 Aligned_cols=20 Identities=50% Similarity=0.737 Sum_probs=14.7
Q ss_pred ccceEEEEEEeCCCCccccc
Q psy4062 32 EQSHMKVYIRVRPQSQKEED 51 (409)
Q Consensus 32 ~~s~~~v~~r~rp~~~~e~~ 51 (409)
..+.|+|+||+||+..+|..
T Consensus 8 ~~~~i~V~vRvRP~~~~E~~ 27 (355)
T 3lre_A 8 LCHHMKVVVRVRPENTKEKA 27 (355)
T ss_dssp ----CEEEEEECCCCHHHHH
T ss_pred ccCCCEEEEEeCcCChHHHh
Confidence 46789999999999998864
No 325
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=26.45 E-value=22 Score=34.45 Aligned_cols=16 Identities=31% Similarity=0.596 Sum_probs=12.9
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
..+-+|.||+|||--+
T Consensus 27 l~vi~G~NGaGKT~il 42 (371)
T 3auy_A 27 IVAIIGENGSGKSSIF 42 (371)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4567999999999654
No 326
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=26.33 E-value=16 Score=32.89 Aligned_cols=16 Identities=31% Similarity=0.478 Sum_probs=13.1
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
.+.-.|++|||||..+
T Consensus 18 ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLI 33 (219)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566899999999865
No 327
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=26.24 E-value=18 Score=31.47 Aligned_cols=15 Identities=33% Similarity=0.600 Sum_probs=12.5
Q ss_pred EEeeccCCCCceeee
Q psy4062 171 VFVYGATGAGKTHTM 185 (409)
Q Consensus 171 I~aYGqTGSGKTyTm 185 (409)
|+-.|..|||||...
T Consensus 3 I~l~G~~GsGKsT~a 17 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQA 17 (216)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 567899999998764
No 328
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=26.23 E-value=22 Score=34.43 Aligned_cols=24 Identities=29% Similarity=0.664 Sum_probs=20.7
Q ss_pred HHhcCcceEEEeeccCCCCceeee
Q psy4062 162 SLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 162 ~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
.+..|++..|...|.+|+|||..+
T Consensus 31 ~~~~~~~~~I~vvG~~g~GKSTLl 54 (361)
T 2qag_A 31 SVKKGFEFTLMVVGESGLGKSTLI 54 (361)
T ss_dssp HHHHCCEECEEECCCTTSCHHHHH
T ss_pred eecCCCCEEEEEEcCCCCCHHHHH
Confidence 367899999999999999999654
No 329
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=26.12 E-value=16 Score=33.82 Aligned_cols=28 Identities=21% Similarity=0.203 Sum_probs=20.3
Q ss_pred HHHHHhcCcc--eEEEeeccCCCCceeeec
Q psy4062 159 IIASLLEGYN--CSVFVYGATGAGKTHTML 186 (409)
Q Consensus 159 lV~~vl~G~N--~tI~aYGqTGSGKTyTm~ 186 (409)
.++.+.-|+. ..+.-.|++|+|||..+.
T Consensus 24 ~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~ 53 (296)
T 1cr0_A 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVR 53 (296)
T ss_dssp THHHHHCSBCTTCEEEEEESTTSSHHHHHH
T ss_pred HHHHHhcCCCCCeEEEEEeCCCCCHHHHHH
Confidence 4566665553 367779999999998763
No 330
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=26.12 E-value=20 Score=37.61 Aligned_cols=38 Identities=29% Similarity=0.372 Sum_probs=22.6
Q ss_pred eCCCCCchhhhccchHHHHHHHhcCcceEEEeeccCCCCceeee
Q psy4062 142 YGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 142 F~~~asQ~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
|.+...|.++-+. +.+.+.+|.+ +++-.+||+|||...
T Consensus 2 ~~~R~~Q~~~~~~----v~~~l~~~~~--~~~~apTGtGKT~a~ 39 (620)
T 4a15_A 2 YENRQYQVEAIDF----LRSSLQKSYG--VALESPTGSGKTIMA 39 (620)
T ss_dssp ---CHHHHHHHHH----HHHHHHHSSE--EEEECCTTSCHHHHH
T ss_pred CCCCHHHHHHHHH----HHHHHHcCCC--EEEECCCCCCHHHHH
Confidence 3344456555543 3334456655 577889999999764
No 331
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=25.99 E-value=16 Score=31.69 Aligned_cols=16 Identities=38% Similarity=0.320 Sum_probs=12.9
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
.|.-.|.+|||||..+
T Consensus 6 ~i~i~G~sGsGKTTl~ 21 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLM 21 (169)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566799999999865
No 332
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=25.98 E-value=26 Score=35.26 Aligned_cols=19 Identities=32% Similarity=0.518 Sum_probs=16.2
Q ss_pred ceEEEeeccCCCCceeeec
Q psy4062 168 NCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 168 N~tI~aYGqTGSGKTyTm~ 186 (409)
...|+..|.+|+|||+|+.
T Consensus 100 p~vIlivG~~G~GKTTt~~ 118 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVA 118 (443)
T ss_dssp SEEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHH
Confidence 4578889999999999974
No 333
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=25.98 E-value=19 Score=32.17 Aligned_cols=17 Identities=29% Similarity=0.501 Sum_probs=14.1
Q ss_pred eEEEeeccCCCCceeee
Q psy4062 169 CSVFVYGATGAGKTHTM 185 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm 185 (409)
..|+-.|..|||||+..
T Consensus 17 ~~I~l~G~~GsGKsT~a 33 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQA 33 (233)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45788999999999754
No 334
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=25.71 E-value=21 Score=34.80 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=15.2
Q ss_pred CCccceEEEEEEeCCCCccccc
Q psy4062 30 PGEQSHMKVYIRVRPQSQKEED 51 (409)
Q Consensus 30 ~~~~s~~~v~~r~rp~~~~e~~ 51 (409)
+.+...|.|+||+||+...|..
T Consensus 4 ~~~~~~i~V~vRvRP~~~~E~~ 25 (359)
T 1x88_A 4 EEKGKNIQVVVRCRPFNLAERK 25 (359)
T ss_dssp -----CCEEEEEECCCCHHHHH
T ss_pred CCCCCCeEEEEEeCCCChhhhh
Confidence 4556789999999999988764
No 335
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=25.66 E-value=28 Score=33.42 Aligned_cols=20 Identities=30% Similarity=0.549 Sum_probs=17.1
Q ss_pred ccceEEEEEEeCCCCccccc
Q psy4062 32 EQSHMKVYIRVRPQSQKEED 51 (409)
Q Consensus 32 ~~s~~~v~~r~rp~~~~e~~ 51 (409)
....|.|+||+||+...|..
T Consensus 5 ~~~~i~V~vRvRP~~~~E~~ 24 (325)
T 1bg2_A 5 AECNIKVMCRFRPLNESEVN 24 (325)
T ss_dssp SSCEEEEEEEECCCCHHHHH
T ss_pred CCCCEEEEEEcCCCChhHhc
Confidence 46789999999999988853
No 336
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=25.59 E-value=26 Score=34.38 Aligned_cols=21 Identities=33% Similarity=0.722 Sum_probs=17.6
Q ss_pred CCccceEEEEEEeCCCCcccc
Q psy4062 30 PGEQSHMKVYIRVRPQSQKEE 50 (409)
Q Consensus 30 ~~~~s~~~v~~r~rp~~~~e~ 50 (409)
+.....|.|+||+||+...|.
T Consensus 19 ~~~~~~i~V~vRvRP~~~~E~ 39 (373)
T 2wbe_C 19 KKSNQNIQVYVRVRPLNSRER 39 (373)
T ss_dssp CCCCEECEEEEEECCCCHHHH
T ss_pred cCCCCCeEEEEEcCCCChhhh
Confidence 445678999999999998875
No 337
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=25.24 E-value=27 Score=32.86 Aligned_cols=17 Identities=35% Similarity=0.544 Sum_probs=13.8
Q ss_pred EEEeeccCCCCceeeec
Q psy4062 170 SVFVYGATGAGKTHTML 186 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm~ 186 (409)
.|...|..|+|||.++.
T Consensus 100 vi~i~G~~G~GKTT~~~ 116 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAG 116 (297)
T ss_dssp EEEEECSSCSSTTHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 45567999999999873
No 338
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=25.14 E-value=21 Score=30.73 Aligned_cols=18 Identities=33% Similarity=0.575 Sum_probs=14.7
Q ss_pred ceEEEeeccCCCCceeee
Q psy4062 168 NCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 168 N~tI~aYGqTGSGKTyTm 185 (409)
...|+-.|..|||||...
T Consensus 20 ~~~I~l~G~~GsGKST~a 37 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQA 37 (201)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 346888999999999754
No 339
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=25.12 E-value=19 Score=31.07 Aligned_cols=16 Identities=25% Similarity=0.432 Sum_probs=13.1
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
.|.-.|..|||||...
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 3677899999999764
No 340
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=25.06 E-value=24 Score=34.22 Aligned_cols=21 Identities=38% Similarity=0.487 Sum_probs=17.3
Q ss_pred CccceEEEEEEeCCCCccccc
Q psy4062 31 GEQSHMKVYIRVRPQSQKEED 51 (409)
Q Consensus 31 ~~~s~~~v~~r~rp~~~~e~~ 51 (409)
.+...|.|+||+||+...|..
T Consensus 8 ~~~~~i~V~vRvRP~~~~E~~ 28 (344)
T 4a14_A 8 AEEAPVRVALRVRPLLPKELL 28 (344)
T ss_dssp -CCCCCEEEEEECCCCHHHHH
T ss_pred ccccceEEEEEecccchHHHh
Confidence 457889999999999988853
No 341
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=24.92 E-value=20 Score=31.26 Aligned_cols=15 Identities=33% Similarity=0.510 Sum_probs=12.5
Q ss_pred EEeeccCCCCceeee
Q psy4062 171 VFVYGATGAGKTHTM 185 (409)
Q Consensus 171 I~aYGqTGSGKTyTm 185 (409)
|+-.|..|||||+..
T Consensus 3 I~l~G~~GsGKsT~a 17 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQG 17 (216)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 566899999998764
No 342
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=24.71 E-value=31 Score=33.61 Aligned_cols=31 Identities=26% Similarity=0.330 Sum_probs=24.9
Q ss_pred chHHHHHHHhc--Cc--ceEEEeeccCCCCceeee
Q psy4062 155 STKDIIASLLE--GY--NCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 155 ~~~plV~~vl~--G~--N~tI~aYGqTGSGKTyTm 185 (409)
++-+-+|.+|. |+ ...+.-||+.|||||..+
T Consensus 44 TG~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLa 78 (356)
T 3hr8_A 44 TGSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLA 78 (356)
T ss_dssp CSCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHH
T ss_pred CCCHHHHHHhccCCccCCcEEEEECCCCCCHHHHH
Confidence 56788999997 54 356788999999999765
No 343
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=24.71 E-value=32 Score=35.19 Aligned_cols=36 Identities=19% Similarity=0.258 Sum_probs=22.1
Q ss_pred CCCCchhhhccchHHHHHHHhcCcceEEEeeccCCCCceeee
Q psy4062 144 PSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 144 ~~asQ~eVf~~~~~plV~~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
+...|.++-+ .+...+.+|.++ ++-.+||+|||.+.
T Consensus 8 ~r~~Q~~~~~----~v~~~~~~~~~~--~~~a~TGtGKT~~~ 43 (540)
T 2vl7_A 8 LRQWQAEKLG----EAINALKHGKTL--LLNAKPGLGKTVFV 43 (540)
T ss_dssp -CCHHHHHHH----HHHHHHHTTCEE--EEECCTTSCHHHHH
T ss_pred CCHHHHHHHH----HHHHHHHcCCCE--EEEcCCCCcHHHHH
Confidence 3445555443 344455677654 55568999999765
No 344
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=24.61 E-value=20 Score=30.52 Aligned_cols=15 Identities=33% Similarity=0.760 Sum_probs=12.5
Q ss_pred EEeeccCCCCceeee
Q psy4062 171 VFVYGATGAGKTHTM 185 (409)
Q Consensus 171 I~aYGqTGSGKTyTm 185 (409)
|.-.|..|||||...
T Consensus 3 I~i~G~~GsGKsT~~ 17 (205)
T 2jaq_A 3 IAIFGTVGAGKSTIS 17 (205)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEECCCccCHHHHH
Confidence 667899999999754
No 345
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=24.56 E-value=25 Score=30.41 Aligned_cols=17 Identities=41% Similarity=0.606 Sum_probs=13.5
Q ss_pred eEEEeeccCCCCceeee
Q psy4062 169 CSVFVYGATGAGKTHTM 185 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm 185 (409)
..|.-.|..|||||..+
T Consensus 30 ~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35666899999999764
No 346
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=24.24 E-value=44 Score=33.29 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=18.4
Q ss_pred CCccceEEEEEEeCCCCccccc
Q psy4062 30 PGEQSHMKVYIRVRPQSQKEED 51 (409)
Q Consensus 30 ~~~~s~~~v~~r~rp~~~~e~~ 51 (409)
+.+...|.|+||+||+...|..
T Consensus 67 ~~~~~~I~V~vRvRPl~~~E~~ 88 (410)
T 1v8k_A 67 PIEEHRICVCVRKRPLNKQELA 88 (410)
T ss_dssp TTSCCCEEEEEEECCCCHHHHH
T ss_pred cCCCCCeEEEEEeCCCChhHhh
Confidence 4457899999999999988753
No 347
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=24.00 E-value=21 Score=30.10 Aligned_cols=14 Identities=36% Similarity=0.565 Sum_probs=11.9
Q ss_pred EEeeccCCCCceee
Q psy4062 171 VFVYGATGAGKTHT 184 (409)
Q Consensus 171 I~aYGqTGSGKTyT 184 (409)
|.-.|..|||||.-
T Consensus 3 I~l~G~~GsGKsT~ 16 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQ 16 (195)
T ss_dssp EEEECSTTSCHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 66789999999864
No 348
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=23.94 E-value=19 Score=32.09 Aligned_cols=16 Identities=31% Similarity=0.760 Sum_probs=13.1
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
.|.-.|++|+|||..+
T Consensus 21 ~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 21 TLVLIGASGVGRSHIK 36 (197)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 4556899999999865
No 349
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=23.92 E-value=29 Score=30.49 Aligned_cols=16 Identities=25% Similarity=0.576 Sum_probs=13.2
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
..+-+|++|||||..|
T Consensus 25 ~~~I~G~NgsGKStil 40 (203)
T 3qks_A 25 INLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEEcCCCCCHHHHH
Confidence 4467899999999776
No 350
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=23.85 E-value=29 Score=30.96 Aligned_cols=17 Identities=18% Similarity=0.184 Sum_probs=13.8
Q ss_pred cceEEEeeccCCCCcee
Q psy4062 167 YNCSVFVYGATGAGKTH 183 (409)
Q Consensus 167 ~N~tI~aYGqTGSGKTy 183 (409)
.--..|-||+.|||||.
T Consensus 19 ~g~l~fiyG~MgsGKTt 35 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKST 35 (195)
T ss_dssp CCEEEEEEECTTSCHHH
T ss_pred ceEEEEEECCCCCcHHH
Confidence 33467889999999993
No 351
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=23.82 E-value=25 Score=28.33 Aligned_cols=16 Identities=25% Similarity=0.493 Sum_probs=13.0
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
.|+..|.+|+|||..+
T Consensus 3 ki~v~G~~~~GKSsli 18 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLF 18 (161)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678899999999654
No 352
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=23.78 E-value=26 Score=34.00 Aligned_cols=15 Identities=33% Similarity=0.567 Sum_probs=13.0
Q ss_pred EEEeeccCCCCceee
Q psy4062 170 SVFVYGATGAGKTHT 184 (409)
Q Consensus 170 tI~aYGqTGSGKTyT 184 (409)
.|.-.|+||||||..
T Consensus 9 lI~I~GptgSGKTtl 23 (340)
T 3d3q_A 9 LIVIVGPTASGKTEL 23 (340)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred eEEEECCCcCcHHHH
Confidence 578899999999974
No 353
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=23.72 E-value=19 Score=41.02 Aligned_cols=19 Identities=32% Similarity=0.564 Sum_probs=16.6
Q ss_pred ceEEEeeccCCCCceeeec
Q psy4062 168 NCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 168 N~tI~aYGqTGSGKTyTm~ 186 (409)
+..++.-|..|||||++|.
T Consensus 23 ~~~~~v~a~AGSGKT~vl~ 41 (1232)
T 3u4q_A 23 GQDILVAAAAGSGKTAVLV 41 (1232)
T ss_dssp SSCEEEEECTTCCHHHHHH
T ss_pred CCCEEEEecCCCcHHHHHH
Confidence 5678888999999999985
No 354
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=23.72 E-value=24 Score=28.33 Aligned_cols=16 Identities=38% Similarity=0.574 Sum_probs=13.4
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
-|+..|.+|+|||..+
T Consensus 5 ~i~v~G~~~~GKssl~ 20 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALT 20 (166)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999764
No 355
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=23.68 E-value=19 Score=34.32 Aligned_cols=17 Identities=29% Similarity=0.346 Sum_probs=13.9
Q ss_pred eEEEeeccCCCCceeee
Q psy4062 169 CSVFVYGATGAGKTHTM 185 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm 185 (409)
-.|.-.|++|||||..+
T Consensus 91 ~ivgI~G~sGsGKSTL~ 107 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTTA 107 (312)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred EEEEEECCCCchHHHHH
Confidence 35556899999999887
No 356
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=23.51 E-value=28 Score=34.02 Aligned_cols=19 Identities=37% Similarity=0.574 Sum_probs=15.5
Q ss_pred cceEEEEEEeCCCCccccc
Q psy4062 33 QSHMKVYIRVRPQSQKEED 51 (409)
Q Consensus 33 ~s~~~v~~r~rp~~~~e~~ 51 (409)
.+.|.|+||+||+...|..
T Consensus 3 ~~~i~V~vRvRP~~~~E~~ 21 (366)
T 2zfi_A 3 GASVKVAVRVRPFNSREMS 21 (366)
T ss_dssp -CCEEEEEEECCCCHHHHH
T ss_pred CCCcEEEEECCCCChhhcc
Confidence 3579999999999988753
No 357
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=23.38 E-value=36 Score=33.62 Aligned_cols=22 Identities=23% Similarity=0.471 Sum_probs=14.8
Q ss_pred CCccceEEEEEEeCCCCccccc
Q psy4062 30 PGEQSHMKVYIRVRPQSQKEED 51 (409)
Q Consensus 30 ~~~~s~~~v~~r~rp~~~~e~~ 51 (409)
....+.|.|+||+||+...|..
T Consensus 17 ~~~~~~irV~vRvRP~~~~E~~ 38 (388)
T 3bfn_A 17 QGPPARVRVAVRLRPFVDGTAG 38 (388)
T ss_dssp SSCCCCCEEEEEECCCC-----
T ss_pred cCCCCCEEEEEECCCCChhhhc
Confidence 4457889999999999988753
No 358
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=23.36 E-value=29 Score=33.65 Aligned_cols=15 Identities=40% Similarity=0.636 Sum_probs=12.0
Q ss_pred EEeeccCCCCceeee
Q psy4062 171 VFVYGATGAGKTHTM 185 (409)
Q Consensus 171 I~aYGqTGSGKTyTm 185 (409)
.+-+|++|||||.-+
T Consensus 26 ~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 346999999999654
No 359
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=23.05 E-value=26 Score=29.47 Aligned_cols=19 Identities=32% Similarity=0.607 Sum_probs=15.4
Q ss_pred cceEEEeeccCCCCceeee
Q psy4062 167 YNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 167 ~N~tI~aYGqTGSGKTyTm 185 (409)
....|+..|.+|+|||..+
T Consensus 47 ~~~~i~vvG~~g~GKSsll 65 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLL 65 (193)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3457899999999999654
No 360
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=22.91 E-value=26 Score=36.71 Aligned_cols=24 Identities=21% Similarity=0.123 Sum_probs=18.8
Q ss_pred HHHHhcCcceEEEeeccCCCCceeee
Q psy4062 160 IASLLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 160 V~~vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
+..+++|.|. +..++||||||...
T Consensus 180 i~~l~~g~dv--lv~a~TGSGKT~~~ 203 (618)
T 2whx_A 180 EDIFRKKRLT--IMDLHPGAGKTKRI 203 (618)
T ss_dssp GGGGSTTCEE--EECCCTTSSTTTTH
T ss_pred HHHHhcCCeE--EEEcCCCCCHHHHH
Confidence 5566777764 77889999999983
No 361
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=22.87 E-value=20 Score=34.18 Aligned_cols=17 Identities=18% Similarity=0.256 Sum_probs=14.1
Q ss_pred eEEEeeccCCCCceeee
Q psy4062 169 CSVFVYGATGAGKTHTM 185 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm 185 (409)
-++.-.|++|||||..+
T Consensus 127 e~vaIvGpsGsGKSTLl 143 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLC 143 (305)
T ss_dssp SEEEEECSSSSSHHHHH
T ss_pred CEEEEECCCCCcHHHHH
Confidence 45677899999999865
No 362
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=22.77 E-value=31 Score=33.64 Aligned_cols=19 Identities=37% Similarity=0.559 Sum_probs=16.3
Q ss_pred cceEEEEEEeCCCCccccc
Q psy4062 33 QSHMKVYIRVRPQSQKEED 51 (409)
Q Consensus 33 ~s~~~v~~r~rp~~~~e~~ 51 (409)
...|.|+||+||+...|..
T Consensus 5 ~~~i~V~vRvRP~~~~E~~ 23 (355)
T 1goj_A 5 ANSIKVVARFRPQNRVEIE 23 (355)
T ss_dssp SCBCEEEEEECCCCHHHHT
T ss_pred CCCeEEEEECCCCChHHhh
Confidence 5789999999999987753
No 363
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=22.72 E-value=35 Score=32.64 Aligned_cols=16 Identities=25% Similarity=0.364 Sum_probs=13.4
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
.|.--|.+|||||.++
T Consensus 94 iigI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4666899999999876
No 364
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=22.72 E-value=36 Score=33.32 Aligned_cols=17 Identities=24% Similarity=0.214 Sum_probs=14.3
Q ss_pred eEEEeeccCCCCceeee
Q psy4062 169 CSVFVYGATGAGKTHTM 185 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm 185 (409)
..+.-+|+.|||||..+
T Consensus 170 ~~i~l~G~~GsGKSTl~ 186 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLA 186 (377)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 46788999999999765
No 365
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=22.47 E-value=22 Score=35.55 Aligned_cols=17 Identities=35% Similarity=0.606 Sum_probs=14.8
Q ss_pred EEEeeccCCCCceeeec
Q psy4062 170 SVFVYGATGAGKTHTML 186 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm~ 186 (409)
.|+..|.+|+|||++..
T Consensus 101 vI~ivG~~GvGKTTla~ 117 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAA 117 (432)
T ss_dssp CEEEECCSSSSTTHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57779999999999874
No 366
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=22.37 E-value=45 Score=31.38 Aligned_cols=31 Identities=23% Similarity=0.232 Sum_probs=23.6
Q ss_pred chHHHHHHHhcCcc--eEEEeeccCCCCceeee
Q psy4062 155 STKDIIASLLEGYN--CSVFVYGATGAGKTHTM 185 (409)
Q Consensus 155 ~~~plV~~vl~G~N--~tI~aYGqTGSGKTyTm 185 (409)
++-+-++.++.|+. ..++-.|.+|+|||.-+
T Consensus 53 TG~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~ 85 (315)
T 3bh0_A 53 SGFTELDRMTYGYKRRNFVLIAARPSMGKTAFA 85 (315)
T ss_dssp CSCHHHHHHHSSBCTTCEEEEECCTTSSHHHHH
T ss_pred CChHHHHhhcCCCCCCcEEEEEeCCCCCHHHHH
Confidence 34567888887764 46888899999999554
No 367
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=22.20 E-value=30 Score=28.71 Aligned_cols=16 Identities=25% Similarity=0.451 Sum_probs=13.3
Q ss_pred eEEEeeccCCCCceee
Q psy4062 169 CSVFVYGATGAGKTHT 184 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyT 184 (409)
..|+-.|..|||||..
T Consensus 8 ~~i~l~G~~GsGKSTv 23 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSL 23 (168)
T ss_dssp CEEEEESCTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 3577899999999875
No 368
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=22.10 E-value=37 Score=32.91 Aligned_cols=32 Identities=28% Similarity=0.347 Sum_probs=24.7
Q ss_pred chHHHHHHHhc--Cc--ceEEEeeccCCCCceeeec
Q psy4062 155 STKDIIASLLE--GY--NCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 155 ~~~plV~~vl~--G~--N~tI~aYGqTGSGKTyTm~ 186 (409)
++-+-+|.++. |+ ...++.||..|+|||....
T Consensus 46 TG~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal 81 (356)
T 1u94_A 46 TGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTL 81 (356)
T ss_dssp CSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHH
T ss_pred CCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHH
Confidence 56777888886 44 3567889999999998753
No 369
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=22.00 E-value=20 Score=32.13 Aligned_cols=16 Identities=38% Similarity=0.644 Sum_probs=12.5
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
.+.-.|+.|||||..+
T Consensus 32 ~~~iiG~nGsGKSTLl 47 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLL 47 (224)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3455799999999765
No 370
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=21.97 E-value=42 Score=32.74 Aligned_cols=20 Identities=15% Similarity=0.537 Sum_probs=15.0
Q ss_pred ccceEEEEEEeCCCCccccc
Q psy4062 32 EQSHMKVYIRVRPQSQKEED 51 (409)
Q Consensus 32 ~~s~~~v~~r~rp~~~~e~~ 51 (409)
....|.|++|+||....|.+
T Consensus 22 ~~~~i~V~vRvRP~~~~e~~ 41 (359)
T 3nwn_A 22 TRKKVHAFVRVKPTDDFAHE 41 (359)
T ss_dssp --CCEEEEEEECCCSSCCTT
T ss_pred CCCCEEEEEEcCCCCccccc
Confidence 35679999999999776653
No 371
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=21.93 E-value=27 Score=38.61 Aligned_cols=28 Identities=21% Similarity=0.113 Sum_probs=21.0
Q ss_pred HHHHHhcCcceEEEeeccCCCCceeeec
Q psy4062 159 IIASLLEGYNCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 159 lV~~vl~G~N~tI~aYGqTGSGKTyTm~ 186 (409)
.+..++......++..+.||+|||.++.
T Consensus 161 av~~~l~~~~~~~LLad~tGlGKTi~Ai 188 (968)
T 3dmq_A 161 IAHDVGRRHAPRVLLADEVGLGKTIEAG 188 (968)
T ss_dssp HHHHHHHSSSCEEEECCCTTSCHHHHHH
T ss_pred HHHHHHHhcCCCEEEECCCCCcHHHHHH
Confidence 4556666655566778999999998874
No 372
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=21.91 E-value=53 Score=27.41 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=18.5
Q ss_pred HhcCcceEEEeeccCCCCceeee
Q psy4062 163 LLEGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 163 vl~G~N~tI~aYGqTGSGKTyTm 185 (409)
++.-....|+..|..|+|||.-+
T Consensus 11 ~~~~~~~~i~v~G~~~~GKssl~ 33 (187)
T 1zj6_A 11 LFNHQEHKVIIVGLDNAGKTTIL 33 (187)
T ss_dssp HHTTSCEEEEEEESTTSSHHHHH
T ss_pred hcCCCccEEEEECCCCCCHHHHH
Confidence 55566778999999999998644
No 373
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=21.90 E-value=35 Score=32.01 Aligned_cols=17 Identities=24% Similarity=0.393 Sum_probs=14.0
Q ss_pred eEEEeeccCCCCceeee
Q psy4062 169 CSVFVYGATGAGKTHTM 185 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm 185 (409)
-.|.-.|++|||||..+
T Consensus 81 ~iigI~G~~GsGKSTl~ 97 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTA 97 (308)
T ss_dssp EEEEEEECTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 45666899999999876
No 374
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=21.70 E-value=24 Score=30.82 Aligned_cols=15 Identities=33% Similarity=0.485 Sum_probs=12.4
Q ss_pred EEeeccCCCCceeee
Q psy4062 171 VFVYGATGAGKTHTM 185 (409)
Q Consensus 171 I~aYGqTGSGKTyTm 185 (409)
|+-.|..|||||.-.
T Consensus 3 I~l~G~~GsGKsT~a 17 (214)
T 1e4v_A 3 IILLGAPVAGKGTQA 17 (214)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 677899999998643
No 375
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=21.66 E-value=23 Score=36.86 Aligned_cols=17 Identities=18% Similarity=0.548 Sum_probs=14.6
Q ss_pred EEEeeccCCCCceeeec
Q psy4062 170 SVFVYGATGAGKTHTML 186 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm~ 186 (409)
.|+-+|++|+|||...-
T Consensus 329 ~vLL~GppGtGKT~LAr 345 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQ 345 (595)
T ss_dssp CEEEEESSCCTHHHHHH
T ss_pred ceEEECCCchHHHHHHH
Confidence 58999999999998763
No 376
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=21.60 E-value=29 Score=28.04 Aligned_cols=18 Identities=22% Similarity=0.399 Sum_probs=14.4
Q ss_pred ceEEEeeccCCCCceeee
Q psy4062 168 NCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 168 N~tI~aYGqTGSGKTyTm 185 (409)
..-|+..|.+|+|||..+
T Consensus 5 ~~~i~v~G~~~~GKssl~ 22 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMI 22 (168)
T ss_dssp EEEEEEECSTTSSHHHHH
T ss_pred eEEEEEECcCCCCHHHHH
Confidence 345788999999999754
No 377
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=21.59 E-value=29 Score=31.22 Aligned_cols=14 Identities=43% Similarity=0.852 Sum_probs=12.0
Q ss_pred EEEeeccCCCCcee
Q psy4062 170 SVFVYGATGAGKTH 183 (409)
Q Consensus 170 tI~aYGqTGSGKTy 183 (409)
.||-.|+.||||+.
T Consensus 31 iI~llGpPGsGKgT 44 (217)
T 3umf_A 31 VIFVLGGPGSGKGT 44 (217)
T ss_dssp EEEEECCTTCCHHH
T ss_pred EEEEECCCCCCHHH
Confidence 47889999999965
No 378
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=21.56 E-value=22 Score=32.39 Aligned_cols=16 Identities=38% Similarity=0.590 Sum_probs=13.1
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
.+.-.|+.|||||..+
T Consensus 26 ~~~liG~nGsGKSTLl 41 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFL 41 (240)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556899999999876
No 379
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=21.38 E-value=37 Score=28.30 Aligned_cols=20 Identities=25% Similarity=0.408 Sum_probs=15.5
Q ss_pred CcceEEEeeccCCCCceeee
Q psy4062 166 GYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 166 G~N~tI~aYGqTGSGKTyTm 185 (409)
.....|...|.+|+|||..+
T Consensus 16 ~~~~~i~v~G~~~~GKssl~ 35 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTIL 35 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHH
Confidence 34567888999999999754
No 380
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=21.34 E-value=29 Score=30.76 Aligned_cols=13 Identities=38% Similarity=0.677 Sum_probs=11.2
Q ss_pred EEeeccCCCCcee
Q psy4062 171 VFVYGATGAGKTH 183 (409)
Q Consensus 171 I~aYGqTGSGKTy 183 (409)
|+-.|+.||||+.
T Consensus 3 Iil~GpPGsGKgT 15 (206)
T 3sr0_A 3 LVFLGPPGAGKGT 15 (206)
T ss_dssp EEEECSTTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 6778999999974
No 381
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=21.33 E-value=22 Score=32.16 Aligned_cols=16 Identities=38% Similarity=0.571 Sum_probs=13.2
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
.+.-.|++|||||..+
T Consensus 33 ~~~i~G~nGsGKSTLl 48 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLL 48 (237)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566899999999865
No 382
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=21.27 E-value=28 Score=30.52 Aligned_cols=16 Identities=31% Similarity=0.511 Sum_probs=13.3
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
.|+-.|..|||||...
T Consensus 7 ~I~l~G~~GsGKsT~~ 22 (222)
T 1zak_A 7 KVMISGAPASGKGTQC 22 (222)
T ss_dssp CEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778999999998754
No 383
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=21.24 E-value=25 Score=30.91 Aligned_cols=16 Identities=31% Similarity=0.607 Sum_probs=13.1
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
.|+-.|..|||||...
T Consensus 7 ~I~l~G~~GsGKsT~a 22 (217)
T 3be4_A 7 NLILIGAPGSGKGTQC 22 (217)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4777899999998753
No 384
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=21.24 E-value=28 Score=32.07 Aligned_cols=17 Identities=24% Similarity=0.423 Sum_probs=14.0
Q ss_pred eEEEeeccCCCCceeee
Q psy4062 169 CSVFVYGATGAGKTHTM 185 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm 185 (409)
..|+..|..|||||...
T Consensus 3 ~~I~l~G~~GsGKST~a 19 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWA 19 (301)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35788999999999753
No 385
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=21.23 E-value=23 Score=32.17 Aligned_cols=16 Identities=56% Similarity=0.756 Sum_probs=13.0
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
.+.-.|+.|||||..+
T Consensus 34 ~~~l~G~nGsGKSTLl 49 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTL 49 (240)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3456799999999876
No 386
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=21.18 E-value=42 Score=32.93 Aligned_cols=21 Identities=29% Similarity=0.507 Sum_probs=15.5
Q ss_pred CccceEEEEEEeCCCCccccc
Q psy4062 31 GEQSHMKVYIRVRPQSQKEED 51 (409)
Q Consensus 31 ~~~s~~~v~~r~rp~~~~e~~ 51 (409)
.-...|.|++|+||+...|..
T Consensus 19 ~~~~~irV~vRvRP~~~~E~~ 39 (376)
T 2rep_A 19 SLKGNIRVFCRVRPVLPGEPT 39 (376)
T ss_dssp ----CEEEEEEECCCCTTSCC
T ss_pred ccCCCeEEEEEcCCCChhhcc
Confidence 446789999999999998874
No 387
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=21.16 E-value=30 Score=29.62 Aligned_cols=17 Identities=24% Similarity=0.393 Sum_probs=13.9
Q ss_pred eEEEeeccCCCCceeee
Q psy4062 169 CSVFVYGATGAGKTHTM 185 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm 185 (409)
..|+-.|..|||||...
T Consensus 5 ~~I~i~G~~GsGKsT~~ 21 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQA 21 (213)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEEcCCCCCHHHHH
Confidence 35778999999999764
No 388
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=21.15 E-value=23 Score=30.69 Aligned_cols=16 Identities=25% Similarity=0.301 Sum_probs=12.9
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
.+.-.|.+|||||..+
T Consensus 8 ~i~i~G~sGsGKTTl~ 23 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLL 23 (174)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEeCCCCCHHHHH
Confidence 4566899999999866
No 389
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=21.11 E-value=23 Score=32.51 Aligned_cols=16 Identities=25% Similarity=0.640 Sum_probs=13.0
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
.+.-.|+.|||||..+
T Consensus 35 ~~~liG~nGsGKSTLl 50 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLI 50 (257)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3455799999999876
No 390
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=21.11 E-value=32 Score=29.97 Aligned_cols=16 Identities=31% Similarity=0.497 Sum_probs=13.4
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
.|.-.|.+|||||...
T Consensus 7 ~i~i~G~~GsGKSTl~ 22 (227)
T 1cke_A 7 VITIDGPSGAGKGTLC 22 (227)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5677999999999765
No 391
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=21.10 E-value=23 Score=33.10 Aligned_cols=15 Identities=27% Similarity=0.587 Sum_probs=12.5
Q ss_pred EEeeccCCCCceeee
Q psy4062 171 VFVYGATGAGKTHTM 185 (409)
Q Consensus 171 I~aYGqTGSGKTyTm 185 (409)
+.-.|++|||||..+
T Consensus 37 ~~iiGpnGsGKSTLl 51 (275)
T 3gfo_A 37 TAILGGNGVGKSTLF 51 (275)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 455899999999876
No 392
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=21.08 E-value=31 Score=31.64 Aligned_cols=17 Identities=24% Similarity=0.202 Sum_probs=14.3
Q ss_pred eEEEeeccCCCCceeee
Q psy4062 169 CSVFVYGATGAGKTHTM 185 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm 185 (409)
..+.-+|+.|||||..+
T Consensus 31 ~i~~i~G~~GsGKTtl~ 47 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLA 47 (279)
T ss_dssp SEEEEEESTTSSHHHHH
T ss_pred CEEEEEcCCCCCHHHHH
Confidence 35778999999999875
No 393
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=20.99 E-value=30 Score=30.29 Aligned_cols=47 Identities=13% Similarity=0.277 Sum_probs=28.1
Q ss_pred EEeeccCCCCceeeecC---------------------CCCCCchhhhhhhhhhHHHhhhhceeEEEEE
Q psy4062 171 VFVYGATGAGKTHTMLG---------------------NENHKGIMYLTMGIRNRVSALTRQMCTMRMY 218 (409)
Q Consensus 171 I~aYGqTGSGKTyTm~G---------------------~~~~~GIi~~~~~~~~lf~~~~~~~s~~eiy 218 (409)
|.-.|++|+|||.-+-. ..+..|.-+.++.. .-|..+.....|+|-.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~~G~dY~Fvs~-~eF~~~i~~g~flE~~ 71 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSV-DEFKSMIKNNEFIEWA 71 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCCBTTTBEECCH-HHHHHHHHTTCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCcCCceeEeecH-HHHHHHHHcCCEEEEE
Confidence 66789999999986521 01223555555543 2566665566666643
No 394
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=20.94 E-value=41 Score=32.57 Aligned_cols=31 Identities=13% Similarity=0.149 Sum_probs=22.4
Q ss_pred chHHHHHHHhc-----Cc-ceEEEeeccCCCCceeee
Q psy4062 155 STKDIIASLLE-----GY-NCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 155 ~~~plV~~vl~-----G~-N~tI~aYGqTGSGKTyTm 185 (409)
++-+-+|.+|. |+ .+.+..||+.|||||.-+
T Consensus 9 TGi~~LD~~LGg~~~GGl~~GiteI~G~pGsGKTtL~ 45 (333)
T 3io5_A 9 TKIPMMNIALSGEITGGMQSGLLILAGPSKSFKSNFG 45 (333)
T ss_dssp CSCHHHHHHHHSSTTCCBCSEEEEEEESSSSSHHHHH
T ss_pred CCCHHHHHHhCCCCCCCCcCCeEEEECCCCCCHHHHH
Confidence 45667788876 33 235788999999999653
No 395
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=20.91 E-value=36 Score=33.14 Aligned_cols=31 Identities=23% Similarity=0.247 Sum_probs=23.8
Q ss_pred chHHHHHHHhc--Ccc--eEEEeeccCCCCceeee
Q psy4062 155 STKDIIASLLE--GYN--CSVFVYGATGAGKTHTM 185 (409)
Q Consensus 155 ~~~plV~~vl~--G~N--~tI~aYGqTGSGKTyTm 185 (409)
++-+-+|.++. |+. ..++.||..|+|||...
T Consensus 57 TG~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtla 91 (366)
T 1xp8_A 57 TGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLA 91 (366)
T ss_dssp CSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHH
T ss_pred CCCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHH
Confidence 56778899887 553 45666999999999765
No 396
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=20.86 E-value=40 Score=33.32 Aligned_cols=32 Identities=19% Similarity=0.304 Sum_probs=24.6
Q ss_pred chHHHHHHHhc-Cc--ceEEEeeccCCCCceeeec
Q psy4062 155 STKDIIASLLE-GY--NCSVFVYGATGAGKTHTML 186 (409)
Q Consensus 155 ~~~plV~~vl~-G~--N~tI~aYGqTGSGKTyTm~ 186 (409)
++-+-+|.+|. |+ ...+.-+|++|||||..+.
T Consensus 162 TG~~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~ 196 (400)
T 3lda_A 162 TGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCH 196 (400)
T ss_dssp CSCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHH
T ss_pred cCChhHHHHhcCCcCCCcEEEEEcCCCCChHHHHH
Confidence 45677889885 44 3567889999999998764
No 397
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=20.80 E-value=23 Score=32.65 Aligned_cols=16 Identities=38% Similarity=0.711 Sum_probs=13.0
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
.+.-.|+.|||||..+
T Consensus 35 ~~~liG~nGsGKSTLl 50 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLL 50 (266)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4556799999999876
No 398
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=20.73 E-value=22 Score=34.68 Aligned_cols=16 Identities=44% Similarity=0.843 Sum_probs=13.1
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
.+.-.|++|||||..+
T Consensus 32 ~~~llGpsGsGKSTLL 47 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLL 47 (359)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCchHHHHH
Confidence 3455899999999886
No 399
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=20.65 E-value=49 Score=32.87 Aligned_cols=31 Identities=19% Similarity=0.243 Sum_probs=23.6
Q ss_pred hHHHHHHHhcCcc--eEEEeeccCCCCceeeec
Q psy4062 156 TKDIIASLLEGYN--CSVFVYGATGAGKTHTML 186 (409)
Q Consensus 156 ~~plV~~vl~G~N--~tI~aYGqTGSGKTyTm~ 186 (409)
+-+.++.++.|+. ..++-+|.+|+|||.-+.
T Consensus 189 G~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l 221 (454)
T 2r6a_A 189 GFTELDRMTSGFQRSDLIIVAARPSVGKTAFAL 221 (454)
T ss_dssp SCHHHHHHHSSBCTTCEEEEECCTTSCHHHHHH
T ss_pred CcHHHHhhcCCCCCCCEEEEECCCCCCHHHHHH
Confidence 3467888887763 467889999999997653
No 400
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=20.57 E-value=22 Score=31.85 Aligned_cols=15 Identities=40% Similarity=0.554 Sum_probs=12.3
Q ss_pred EEeeccCCCCceeee
Q psy4062 171 VFVYGATGAGKTHTM 185 (409)
Q Consensus 171 I~aYGqTGSGKTyTm 185 (409)
+.-.|+.|||||..|
T Consensus 38 ~~iiG~NGsGKSTLl 52 (214)
T 1sgw_A 38 VNFHGPNGIGKTTLL 52 (214)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 345799999999876
No 401
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=20.51 E-value=24 Score=34.44 Aligned_cols=16 Identities=44% Similarity=0.686 Sum_probs=13.1
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
.+.-.|++|||||..|
T Consensus 31 ~~~llGpnGsGKSTLL 46 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTL 46 (359)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEEcCCCchHHHHH
Confidence 3455799999999987
No 402
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=20.47 E-value=24 Score=34.80 Aligned_cols=16 Identities=31% Similarity=0.578 Sum_probs=13.1
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
.+--.|++|||||.+|
T Consensus 31 ~~~llGpsGsGKSTLL 46 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLL 46 (381)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEcCCCchHHHHH
Confidence 3455899999999986
No 403
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=20.46 E-value=34 Score=29.47 Aligned_cols=16 Identities=38% Similarity=0.443 Sum_probs=13.1
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
.|.-.|..|||||...
T Consensus 4 ~i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3566899999999865
No 404
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=20.44 E-value=23 Score=38.54 Aligned_cols=17 Identities=41% Similarity=0.655 Sum_probs=14.3
Q ss_pred eEEEeeccCCCCceeee
Q psy4062 169 CSVFVYGATGAGKTHTM 185 (409)
Q Consensus 169 ~tI~aYGqTGSGKTyTm 185 (409)
..|+-||+.|+|||+..
T Consensus 512 ~gvLl~GPPGtGKT~lA 528 (806)
T 3cf2_A 512 KGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp SCCEEESSTTSSHHHHH
T ss_pred ceEEEecCCCCCchHHH
Confidence 45889999999999664
No 405
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=20.34 E-value=24 Score=32.51 Aligned_cols=16 Identities=25% Similarity=0.630 Sum_probs=12.6
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
.+.-.|++|||||..+
T Consensus 34 ~~~liG~nGsGKSTLl 49 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFL 49 (262)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3455799999999865
No 406
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=20.29 E-value=24 Score=32.45 Aligned_cols=16 Identities=31% Similarity=0.534 Sum_probs=13.3
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
.+.-.|++|||||..+
T Consensus 48 ~~~i~G~nGsGKSTLl 63 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIA 63 (260)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566899999999876
No 407
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=20.23 E-value=33 Score=27.61 Aligned_cols=16 Identities=31% Similarity=0.561 Sum_probs=13.2
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
-|+..|.+|+|||.-+
T Consensus 6 ~i~v~G~~~~GKssl~ 21 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALT 21 (168)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778899999999654
No 408
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=20.22 E-value=24 Score=32.16 Aligned_cols=16 Identities=25% Similarity=0.484 Sum_probs=13.0
Q ss_pred EEEeeccCCCCceeee
Q psy4062 170 SVFVYGATGAGKTHTM 185 (409)
Q Consensus 170 tI~aYGqTGSGKTyTm 185 (409)
.+.-.|++|||||..+
T Consensus 37 ~~~i~G~nGsGKSTLl 52 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLT 52 (247)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3456899999999865
No 409
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=20.11 E-value=33 Score=28.18 Aligned_cols=18 Identities=39% Similarity=0.610 Sum_probs=14.6
Q ss_pred ceEEEeeccCCCCceeee
Q psy4062 168 NCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 168 N~tI~aYGqTGSGKTyTm 185 (409)
...|+..|.+|+|||.-+
T Consensus 8 ~~~i~v~G~~~~GKSsli 25 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLM 25 (182)
T ss_dssp EEEEEEECCTTSSHHHHH
T ss_pred eEEEEEECCCCCCHHHHH
Confidence 356888999999999754
No 410
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=20.05 E-value=32 Score=36.44 Aligned_cols=19 Identities=26% Similarity=0.242 Sum_probs=15.1
Q ss_pred cCcceEEEeeccCCCCceeee
Q psy4062 165 EGYNCSVFVYGATGAGKTHTM 185 (409)
Q Consensus 165 ~G~N~tI~aYGqTGSGKTyTm 185 (409)
.|.| ++..|+||||||...
T Consensus 240 ~g~d--vlv~apTGSGKTl~~ 258 (673)
T 2wv9_A 240 KRQL--TVLDLHPGAGKTRRI 258 (673)
T ss_dssp TTCE--EEECCCTTTTTTTTH
T ss_pred cCCe--EEEEeCCCCCHHHHH
Confidence 5655 578899999999873
Done!