RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4062
(409 letters)
>gnl|CDD|238666 cd01370, KISc_KIP3_like, Kinesin motor domain, KIP3-like subgroup.
The yeast kinesin KIP3 plays a role in positioning the
mitotic spindle. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 338
Score = 205 bits (523), Expect = 7e-63
Identities = 77/124 (62%), Positives = 101/124 (81%), Gaps = 6/124 (4%)
Query: 236 LMVYVKMQDK---ATKQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNC 292
L + V+ +D+ +Q+++ KLS+IDLAGSERA+A ++ R KEG+NIN+SLLALGNC
Sbjct: 215 LQITVRQKDRTASINQQVRIGKLSLIDLAGSERASATNNRGQRLKEGANINRSLLALGNC 274
Query: 293 INSLADGC---RHVPYRDSKLTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATR 349
IN+L DG +H+PYRDSKLTR+LKDSLGGNCKTVMIANI+P++ YE+++NTLKYA R
Sbjct: 275 INALVDGKKKNKHIPYRDSKLTRLLKDSLGGNCKTVMIANISPSSSHYEETHNTLKYANR 334
Query: 350 AKKI 353
AK I
Sbjct: 335 AKNI 338
Score = 150 bits (381), Expect = 5e-42
Identities = 51/128 (39%), Positives = 86/128 (67%), Gaps = 9/128 (7%)
Query: 72 HMKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKS 131
+ V +RVRP ++KE+ R +VK+++ ++FDPK ++ F R++ +++
Sbjct: 1 SLTVAVRVRPFNEKEKQEGTRRVVKVVDDRMLVFDPKDEEDAF---------RNLRARRN 51
Query: 132 KEMEFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGNENH 191
KE+++ FDRV+ + + ++VY+ +TK ++ +L GYN +VF YGATGAGKTHTMLG ++
Sbjct: 52 KELKYSFDRVFDETSTQEEVYENTTKPLVDGVLNGYNATVFAYGATGAGKTHTMLGTDSD 111
Query: 192 KGIMYLTM 199
G+M LTM
Sbjct: 112 PGLMVLTM 119
>gnl|CDD|215803 pfam00225, Kinesin, Kinesin motor domain.
Length = 326
Score = 184 bits (470), Expect = 4e-55
Identities = 64/121 (52%), Positives = 92/121 (76%), Gaps = 3/121 (2%)
Query: 236 LMVYVKMQDKATK-QMKMVKLSMIDLAGSERAA-ANSSNQMRFKEGSNINKSLLALGNCI 293
+ V+ +++ T +K KL+++DLAGSERA+ ++ R KE +NINKSL ALGN I
Sbjct: 206 FTITVEQRNRDTDGSVKTGKLNLVDLAGSERASKTGAAGGRRLKEAANINKSLSALGNVI 265
Query: 294 NSLADGCR-HVPYRDSKLTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKK 352
N+LA+ H+PYRDSKLTR+L+DSLGGN KT+MIANI+P+ +YE++ +TL++A+RAK
Sbjct: 266 NALAENQSSHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSDSNYEETLSTLRFASRAKN 325
Query: 353 I 353
I
Sbjct: 326 I 326
Score = 107 bits (270), Expect = 3e-26
Identities = 38/124 (30%), Positives = 61/124 (49%), Gaps = 19/124 (15%)
Query: 78 RVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKSKEMEFL 137
RVRP +++E+ +IV + + K +E F
Sbjct: 1 RVRPLNEREKSRGSSDIVN-----------------VDETDSEDKESVVITNKGREKTFT 43
Query: 138 FDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGN--ENHKGIM 195
FDRV+ P + + VY+ + K ++ S+LEGYN ++F YG TG+GKT+TM G+ E GI+
Sbjct: 44 FDRVFDPEATQEFVYEETAKPLVESVLEGYNVTIFAYGQTGSGKTYTMEGDPPEEEPGII 103
Query: 196 YLTM 199
+
Sbjct: 104 PRAL 107
>gnl|CDD|214526 smart00129, KISc, Kinesin motor, catalytic domain. ATPase.
Microtubule-dependent molecular motors that play
important roles in intracellular transport of organelles
and in cell division.
Length = 335
Score = 176 bits (448), Expect = 7e-52
Identities = 65/129 (50%), Positives = 91/129 (70%), Gaps = 4/129 (3%)
Query: 235 QLMVYVKMQDK--ATKQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNC 292
+ V+ + K ++ K KL+++DLAGSERA + R KE NINKSL ALGN
Sbjct: 206 VFTITVEQKIKNSSSGSGKASKLNLVDLAGSERAKKTGAEGDRLKEAGNINKSLSALGNV 265
Query: 293 INSLADGC--RHVPYRDSKLTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRA 350
IN+LA RH+PYRDSKLTR+L+DSLGGN KT+MIAN++P++ + E++ +TL++A+RA
Sbjct: 266 INALAQHSKSRHIPYRDSKLTRLLQDSLGGNSKTLMIANVSPSSSNLEETLSTLRFASRA 325
Query: 351 KKIKAKVSR 359
K+IK K
Sbjct: 326 KEIKNKPIV 334
Score = 117 bits (296), Expect = 7e-30
Identities = 37/128 (28%), Positives = 67/128 (52%), Gaps = 17/128 (13%)
Query: 72 HMKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKS 131
+++V +RVRP +++E+ +V F K + K +
Sbjct: 1 NIRVVVRVRPLNKREKSRKSPSVVP--------FPDKVGKTLTVRS---------PKNRQ 43
Query: 132 KEMEFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGNENH 191
E +F FD+V+ + S +DV++ + ++ S+LEGYN ++F YG TG+GKT+TM+G +
Sbjct: 44 GEKKFTFDKVFDATASQEDVFEETAAPLVDSVLEGYNATIFAYGQTGSGKTYTMIGTPDS 103
Query: 192 KGIMYLTM 199
GI+ +
Sbjct: 104 PGIIPRAL 111
>gnl|CDD|238054 cd00106, KISc, Kinesin motor domain. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Kinesins are microtubule-dependent
molecular motors that play important roles in
intracellular transport and in cell division. In most
kinesins, the motor domain is found at the N-terminus
(N-type), in some its is found in the middle (M-type),
or C-terminal (C-type). N-type and M-type kinesins are
(+) end-directed motors, while C-type kinesins are (-)
end-directed motors, i.e. they transport cargo towards
the (-) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 328
Score = 168 bits (427), Expect = 1e-48
Identities = 95/347 (27%), Positives = 152/347 (43%), Gaps = 86/347 (24%)
Query: 72 HMKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDS-----EFFFHGV------- 119
+++V +R+RP + +E + + + T+ P +D F F V
Sbjct: 1 NIRVVVRIRPLNGRESKSEE-SCITVDDNKTVTLTPPKDGRKAGPKSFTFDHVFDPNSTQ 59
Query: 120 ----KQSLRDINKK------------------KSKEM--------------EFLFDRVYG 143
+ + + + + K+ M E LF+ +
Sbjct: 60 EDVYETTAKPLVESVLEGYNGTIFAYGQTGSGKTYTMFGSPKDPGIIPRALEDLFNLIDE 119
Query: 144 PSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGNENHKGIM-------- 195
E N + + S LE YN V+ + L + G+
Sbjct: 120 RKEKN------KSFSVSVSYLEIYNEKVYDLLSPEPPSKPLSLREDPKGGVYVKGLTEVE 173
Query: 196 ---------YLTMGIRNRVSALTRQMCTMRMYKTCLILRRKPSICEKMQLMVYVKMQDKA 246
L G++NR +A T M R +I + V +
Sbjct: 174 VGSAEDALSLLQKGLKNRTTASTA-MNERS--------SRSHAI---FTIHVEQRNTTND 221
Query: 247 TKQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLADG--CRHVP 304
+ +K KL+++DLAGSERA + R KE NINKSL ALGN I++L+ G +H+P
Sbjct: 222 GRSIKSSKLNLVDLAGSERAKKTGAEGDRLKEAKNINKSLSALGNVISALSSGQKKKHIP 281
Query: 305 YRDSKLTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAK 351
YRDSKLTR+L+DSLGGN KT+MIANI+P++ +Y+++ +TL++A+RAK
Sbjct: 282 YRDSKLTRLLQDSLGGNSKTLMIANISPSSENYDETLSTLRFASRAK 328
Score = 103 bits (260), Expect = 6e-25
Identities = 38/164 (23%), Positives = 66/164 (40%), Gaps = 55/164 (33%)
Query: 35 HMKVYIRVRPQSQKEEDGCHSVMTTLELGIIHTGEQSHMKVYIRVRPQSQKEEDGCHREI 94
+++V +R+RP + +E S
Sbjct: 1 NIRVVVRIRPLNGRESKSEES--------------------------------------C 22
Query: 95 VKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKSKEMEFLFDRVYGPSESNQDVYDG 154
+ + + T+ P +D K+ F FD V+ P+ + +DVY+
Sbjct: 23 ITVDDNKTVTLTPPKDGR-----------------KAGPKSFTFDHVFDPNSTQEDVYET 65
Query: 155 STKDIIASLLEGYNCSVFVYGATGAGKTHTMLGNENHKGIMYLT 198
+ K ++ S+LEGYN ++F YG TG+GKT+TM G+ GI+
Sbjct: 66 TAKPLVESVLEGYNGTIFAYGQTGSGKTYTMFGSPKDPGIIPRA 109
>gnl|CDD|238668 cd01372, KISc_KIF4, Kinesin motor domain, KIF4-like subfamily.
Members of this group seem to perform a variety of
functions, and have been implicated in neuronal
organelle transport and chromosome segregation during
mitosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 341
Score = 152 bits (386), Expect = 9e-43
Identities = 57/104 (54%), Positives = 73/104 (70%), Gaps = 3/104 (2%)
Query: 254 KLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLADGCR---HVPYRDSKL 310
K +DLAGSER + R KEG +IN LLALGN I++L D + HVPYRDSKL
Sbjct: 238 KFHFVDLAGSERLKKTGATGDRLKEGISINSGLLALGNVISALGDESKKGSHVPYRDSKL 297
Query: 311 TRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKIK 354
TR+L+DSLGGN T+MIA ++P ++E++ NTLKYA RA+ IK
Sbjct: 298 TRLLQDSLGGNSHTLMIACVSPADSNFEETLNTLKYANRARNIK 341
Score = 83.9 bits (208), Expect = 5e-18
Identities = 37/127 (29%), Positives = 55/127 (43%), Gaps = 30/127 (23%)
Query: 74 KVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKSKE 133
+V +RVRP KE + V ++ + + + KS
Sbjct: 4 RVAVRVRPLLPKELLEGCQVCVSVVPGEPQVT--------------------VGTDKS-- 41
Query: 134 MEFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLG------ 187
F FD V+ PS S ++VY+ ++ L EGYN +V YG TG+GKT+TM
Sbjct: 42 --FTFDYVFDPSTSQEEVYNTCVAPLVDGLFEGYNATVLAYGQTGSGKTYTMGTAFTASE 99
Query: 188 NENHKGI 194
+E GI
Sbjct: 100 DEEEVGI 106
>gnl|CDD|238661 cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, KIF1_like
proteins. KIF1A (Unc104) transports synaptic vesicles to
the nerve terminal, KIF1B has been implicated in
transport of mitochondria. Both proteins are expressed
in neurons. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
In contrast to the majority of dimeric kinesins, most
KIF1A/Unc104 kinesins are monomeric motors. A
lysine-rich loop in KIF1A binds to the negatively
charged C-terminus of tubulin and compensates for the
lack of a second motor domain, allowing KIF1A to move
processively.
Length = 356
Score = 152 bits (387), Expect = 1e-42
Identities = 61/126 (48%), Positives = 83/126 (65%), Gaps = 10/126 (7%)
Query: 242 MQDKATKQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLADGCR 301
++ K+ K+S++DLAGSERA++ + R KEGSNINKSL LG I++LAD
Sbjct: 230 DKETDLTTEKVSKISLVDLAGSERASSTGAEGDRLKEGSNINKSLTTLGKVISALADNSS 289
Query: 302 --------HVPYRDSKLTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKI 353
+PYRDS LT +LK++LGGN KT MIA I+P ++YE++ +TL+YA RAKKI
Sbjct: 290 AKSKKKSSFIPYRDSVLTWLLKENLGGNSKTAMIATISPADINYEETLSTLRYADRAKKI 349
Query: 354 K--AKV 357
A V
Sbjct: 350 VNVAVV 355
Score = 83.1 bits (206), Expect = 1e-17
Identities = 38/131 (29%), Positives = 67/131 (51%), Gaps = 23/131 (17%)
Query: 71 SHMKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKK 130
+++KV +RVRP + +E++ + IV++ + T + +PK D+ +
Sbjct: 1 ANVKVAVRVRPFNSREKNRGSKCIVQMPGKVTTLKNPKAADAT----------------R 44
Query: 131 SKEMEFLFDRVY----GPSE---SNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTH 183
K F FD Y S +DV++ ++++ EGYN +F YG TG+GK++
Sbjct: 45 KKPKSFSFDHSYWSHDSEDPHYASQEDVFEDLGRELLDHAFEGYNVCLFAYGQTGSGKSY 104
Query: 184 TMLGNENHKGI 194
TM+G + KGI
Sbjct: 105 TMMGYKEEKGI 115
>gnl|CDD|238662 cd01366, KISc_C_terminal, Kinesin motor domain,
KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a
spindle motor protein necessary for chromosome
segregation in meiosis. KIFC2/KIFC3-like kinesins have
been implicated in motility of the Golgi apparatus as
well as dentritic and axonal transport in neurons. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Kinesins are
microtubule-dependent molecular motors that play
important roles in intracellular transport and in cell
division. In this subgroup the motor domain is found at
the C-terminus (C-type). C-type kinesins are (-)
end-directed motors, i.e. they transport cargo towards
the (-) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 329
Score = 150 bits (381), Expect = 4e-42
Identities = 48/119 (40%), Positives = 76/119 (63%)
Query: 236 LMVYVKMQDKATKQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINS 295
+ ++ + T + KL+++DLAGSER + + R KE INKSL ALG+ I++
Sbjct: 209 FQLKIRGTNLQTGEQTRGKLNLVDLAGSERLKKSGATGDRLKEAQAINKSLSALGDVISA 268
Query: 296 LADGCRHVPYRDSKLTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKIK 354
L HVPYR+SKLT +L+DSLGGN KT+M NI+P + ++ +L++A+R + ++
Sbjct: 269 LRSKDSHVPYRNSKLTYLLQDSLGGNSKTLMFVNISPLESNLSETLCSLRFASRVRSVE 327
Score = 94.2 bits (235), Expect = 2e-21
Identities = 39/138 (28%), Positives = 59/138 (42%), Gaps = 22/138 (15%)
Query: 75 VYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKSKEM 134
V+ RVRP E I F + + +++K K+
Sbjct: 6 VFCRVRPLLPSESTE---------YSSVISFPDEDGGT-----------IELSKGTGKKK 45
Query: 135 EFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGNENHKGI 194
F FDRV+ P S +DV+ ++ S L+GYN +F YG TG+GKT+TM G + GI
Sbjct: 46 SFSFDRVFDPDASQEDVF-EEVSPLVQSALDGYNVCIFAYGQTGSGKTYTMEGPPENPGI 104
Query: 195 MYLT-MGIRNRVSALTRQ 211
+ + N L +
Sbjct: 105 IPRALEQLFNTAEELKEK 122
>gnl|CDD|238667 cd01371, KISc_KIF3, Kinesin motor domain, kinesins II or KIF3_like
proteins. Subgroup of kinesins, which form heterotrimers
composed of 2 kinesins and one non-motor accessory
subunit. Kinesins II play important roles in ciliary
transport, and have been implicated in neuronal
transport, melanosome transport, the secretory pathway,
and mitosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In this group the motor
domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 333
Score = 145 bits (368), Expect = 4e-40
Identities = 59/121 (48%), Positives = 83/121 (68%), Gaps = 4/121 (3%)
Query: 237 MVYVKMQDK---ATKQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCI 293
+ ++ +K +++ KL+++DLAGSER + + R KE + IN SL ALGN I
Sbjct: 213 TITIECSEKGEDGENHIRVGKLNLVDLAGSERQSKTGATGDRLKEATKINLSLSALGNVI 272
Query: 294 NSLADG-CRHVPYRDSKLTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKK 352
++L DG H+PYRDSKLTR+L+DSLGGN KTVM ANI P +Y+++ +TL+YA RAK
Sbjct: 273 SALVDGKSTHIPYRDSKLTRLLQDSLGGNSKTVMCANIGPADYNYDETLSTLRYANRAKN 332
Query: 353 I 353
I
Sbjct: 333 I 333
Score = 85.1 bits (211), Expect = 2e-18
Identities = 42/119 (35%), Positives = 60/119 (50%), Gaps = 20/119 (16%)
Query: 74 KVYIRVRPQSQKEEDGCHREIVKI-LNRDTIIFD-PKQDDSEFFFHGVKQSLRDINKKKS 131
KV +R RP +++E+ EIV + NR + PK D E K
Sbjct: 4 KVVVRCRPLNKREKSEGAPEIVGVDENRGQVTVHNPKADAKE--------------PPKV 49
Query: 132 KEMEFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGNEN 190
F FD VY P+ + +DVY+ + + ++ S+LEGYN ++F YG TG GKT TM G
Sbjct: 50 ----FTFDAVYDPNSTQEDVYNETARPLVDSVLEGYNGTIFAYGQTGTGKTFTMEGVRE 104
>gnl|CDD|238670 cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E/KIP2-like
subgroup, involved in chromosome movement and/or spindle
elongation during mitosis. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Kinesins are microtubule-dependent
molecular motors that play important roles in
intracellular transport and in cell division. In most
kinesins, the motor domain is found at the N-terminus
(N-type). N-type kinesins are (+) end-directed motors,
i.e. they transport cargo towards the (+) end of the
microtubule. Kinesin motor domains hydrolyze ATP at a
rate of about 80 per second, and move along the
microtubule at a speed of about 6400 Angstroms per
second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 321
Score = 141 bits (357), Expect = 9e-39
Identities = 56/101 (55%), Positives = 74/101 (73%), Gaps = 3/101 (2%)
Query: 255 LSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLADGCR--HVPYRDSKLTR 312
L++IDLAGSERA+ + R KEGS INKSLL LG I+ L++G H+PYRDSKLTR
Sbjct: 222 LNLIDLAGSERASQ-TGAGERRKEGSFINKSLLTLGTVISKLSEGKNSGHIPYRDSKLTR 280
Query: 313 ILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKI 353
IL+ SL GN +T +I I+P + E++ NTLK+A+RAKK+
Sbjct: 281 ILQPSLSGNARTAIICTISPASSHVEETLNTLKFASRAKKV 321
Score = 99.7 bits (249), Expect = 2e-23
Identities = 45/126 (35%), Positives = 65/126 (51%), Gaps = 23/126 (18%)
Query: 74 KVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKSKE 133
KV +RVRP + +E D + I N +TI SL + +S
Sbjct: 3 KVSVRVRPLNPRESDN-EQVAWSIDNDNTI------------------SLEESTPGQS-- 41
Query: 134 MEFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGNENHKG 193
F FDRV+G +N++VY+ K ++ S LEGYN ++F YG T +GKT TM G+E G
Sbjct: 42 --FTFDRVFGGESTNREVYERIAKPVVRSALEGYNGTIFAYGQTSSGKTFTMSGDEQEPG 99
Query: 194 IMYLTM 199
I+ L +
Sbjct: 100 IIPLAV 105
>gnl|CDD|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain. These
ATPases belong to the P-loop NTPase family and provide
the driving force in myosin and kinesin mediated
processes.
Length = 186
Score = 137 bits (346), Expect = 9e-39
Identities = 75/186 (40%), Positives = 110/186 (59%), Gaps = 26/186 (13%)
Query: 159 IIASLLEGYNCSVFVYGATGAGKTHTMLGNENHKGIMYLTM---------GIRNRVSALT 209
++ S L+GYN +F YG TG+GKT+TM G GI+ T+ G NR +A T
Sbjct: 15 LLQSALDGYNVCIFAYGQTGSGKTYTMEGKREGAGIIPRTVTDVIDLMDKGNANRTTAAT 74
Query: 210 RQMCTMRMYKTCLILRRKPSICEKMQLMVYVKMQDK---ATKQMKMVKLSMIDLAGSERA 266
M + + R S+ ++ ++ AT+Q K+ K++++DLAGSER
Sbjct: 75 ----AMNEHSS-----RSHSV-----FRIHFGGKNALASATEQPKVGKINLVDLAGSERI 120
Query: 267 AANSSNQMRFKEGSNINKSLLALGNCINSLADGCRHVPYRDSKLTRILKDSLGGNCKTVM 326
+ + R E +NINKSL LGN I++LA+ HVPYR+SKLTR+L+DSLGGN +T+M
Sbjct: 121 DFSGAEGSRLTETANINKSLSTLGNVISALAERDSHVPYRESKLTRLLQDSLGGNSRTLM 180
Query: 327 IANIAP 332
+A I+P
Sbjct: 181 VACISP 186
>gnl|CDD|238663 cd01367, KISc_KIF2_like, Kinesin motor domain, KIF2-like group.
KIF2 is a protein expressed in neurons, which has been
associated with axonal transport and neuron development;
alternative splice forms have been implicated in
lysosomal translocation. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Kinesins are microtubule-dependent
molecular motors that play important roles in
intracellular transport and in cell division. In this
subgroup the motor domain is found in the middle
(M-type) of the protein chain. M-type kinesins are (+)
end-directed motors, i.e. they transport cargo towards
the (+) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second (KIF2 may be slower). To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 322
Score = 138 bits (349), Expect = 1e-37
Identities = 59/99 (59%), Positives = 71/99 (71%), Gaps = 1/99 (1%)
Query: 254 KLSMIDLAGSERAAANS-SNQMRFKEGSNINKSLLALGNCINSLADGCRHVPYRDSKLTR 312
KLS IDLAGSER A S ++ KEG+ INKSLLAL CI +LA HVP+R SKLT+
Sbjct: 224 KLSFIDLAGSERGADTSEHDRQTRKEGAEINKSLLALKECIRALASNKAHVPFRGSKLTQ 283
Query: 313 ILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAK 351
+L+DS GN KTVMIA I+P+A S E + NTL+YA R K
Sbjct: 284 VLRDSFIGNSKTVMIATISPSASSCEHTLNTLRYADRVK 322
Score = 85.4 bits (212), Expect = 1e-18
Identities = 39/121 (32%), Positives = 61/121 (50%), Gaps = 13/121 (10%)
Query: 74 KVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKSKE 133
V +R RP + KE ++V + T+ H K + D+ K K
Sbjct: 4 TVAVRKRPLNDKELSKGETDVVSCESNPTVTV-----------HEPKTKV-DLTKYIEKH 51
Query: 134 MEFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGNENHKG 193
F FD V+ + +N++VY + K +I + EG + F YG TG+GKT+TMLG+EN +G
Sbjct: 52 -TFRFDYVFDEAVTNEEVYRSTVKPLIPHVFEGGVATCFAYGQTGSGKTYTMLGDENQEG 110
Query: 194 I 194
+
Sbjct: 111 L 111
>gnl|CDD|238660 cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC/Eg5 spindle pole
proteins, participate in spindle assembly and chromosome
segregation during cell division. This catalytic (head)
domain has ATPase activity and belongs to the larger
group of P-loop NTPases. Kinesins are
microtubule-dependent molecular motors that play
important roles in intracellular transport and in cell
division. In most kinesins, the motor domain is found at
the N-terminus (N-type), N-type kinesins are (+)
end-directed motors, i.e. they transport cargo towards
the (+) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 352
Score = 135 bits (343), Expect = 2e-36
Identities = 55/120 (45%), Positives = 85/120 (70%), Gaps = 1/120 (0%)
Query: 238 VYVKMQDKATKQM-KMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSL 296
+++K + +++ K+ KL+++DLAGSE + + R +E NIN+SLL LG IN+L
Sbjct: 227 IHIKETTISGEELVKIGKLNLVDLAGSENIGRSGAENKRAREAGNINQSLLTLGRVINAL 286
Query: 297 ADGCRHVPYRDSKLTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKIKAK 356
+ H+PYR+SKLTR+L+DSLGG KT +IA I+P +++ E++ +TL+YA RAK IK K
Sbjct: 287 VEKSPHIPYRESKLTRLLQDSLGGRTKTSIIATISPASINLEETLSTLEYAHRAKNIKNK 346
Score = 80.0 bits (198), Expect = 1e-16
Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 19/122 (15%)
Query: 71 SHMKVYIRVRPQSQKEEDGCHREIVKILN-RDTIIFDPKQDDSEFFFHGVKQSLRDINKK 129
S+++V +R RP++ +E +V++ II V D
Sbjct: 2 SNIQVVVRCRPRNSRERKEKSSVVVEVSGSSKEII--------------VSTGGADKQST 47
Query: 130 KSKEMEFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGNE 189
K+ + FD+V+GP +VY I+ +L GYNC++F YG TG GKT+TM G+
Sbjct: 48 KT----YTFDKVFGPEADQIEVYSQVVSPILDEVLMGYNCTIFAYGQTGTGKTYTMEGDR 103
Query: 190 NH 191
Sbjct: 104 TD 105
>gnl|CDD|238665 cd01369, KISc_KHC_KIF5, Kinesin motor domain, kinesin heavy chain
(KHC) or KIF5-like subgroup. Members of this group have
been associated with organelle transport. This catalytic
(head) domain has ATPase activity and belongs to the
larger group of P-loop NTPases. Kinesins are
microtubule-dependent molecular motors that play
important roles in intracellular transport and in cell
division. In most kinesins, the motor domain is found at
the N-terminus (N-type). N-type kinesins are (+)
end-directed motors, i.e. they transport cargo towards
the (+) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 325
Score = 132 bits (333), Expect = 3e-35
Identities = 62/159 (38%), Positives = 89/159 (55%), Gaps = 15/159 (9%)
Query: 196 YLTMGIRNRVSALTRQMCTMRMYKTCLILRRKPSICEKMQLMVYVKMQDKATKQMKMVKL 255
+ G NR A T M + R SI ++ +K ++ T K KL
Sbjct: 181 VINEGKSNRAVASTN----MNEESS-----RSHSI-----FLITLKQENVETGSKKRGKL 226
Query: 256 SMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLADGCR-HVPYRDSKLTRIL 314
++DLAGSE+ + + +E INKSL ALGN IN+L DG H+PYRDSKLTRIL
Sbjct: 227 FLVDLAGSEKVSKTGAEGQTLEEAKKINKSLSALGNVINALTDGKSTHIPYRDSKLTRIL 286
Query: 315 KDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKI 353
+DSLGGN +T +I +P++ + ++ +TL++ RAK I
Sbjct: 287 QDSLGGNSRTTLIICCSPSSYNESETLSTLRFGARAKTI 325
Score = 97.4 bits (243), Expect = 1e-22
Identities = 43/128 (33%), Positives = 62/128 (48%), Gaps = 25/128 (19%)
Query: 71 SHMKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKK 130
++KV R RP ++KEE + IVK DT+ D
Sbjct: 2 CNIKVVCRFRPLNEKEELRGSKSIVKFPGEDTVSIAGSDD-------------------- 41
Query: 131 SKEMEFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLG--- 187
F FDRV+ P+ + +DVY+ K I+ +L GYN ++F YG TG+GKT+TM G
Sbjct: 42 --GKTFSFDRVFPPNTTQEDVYNFVAKPIVDDVLNGYNGTIFAYGQTGSGKTYTMEGPPG 99
Query: 188 NENHKGIM 195
+ KGI+
Sbjct: 100 DPELKGII 107
>gnl|CDD|227392 COG5059, KIP1, Kinesin-like protein [Cytoskeleton].
Length = 568
Score = 135 bits (342), Expect = 5e-35
Identities = 63/109 (57%), Positives = 84/109 (77%), Gaps = 2/109 (1%)
Query: 253 VKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLADGCR--HVPYRDSKL 310
KLS++DLAGSERAA + R KEG++INKSLL LGN IN+L D + H+PYR+SKL
Sbjct: 234 SKLSLVDLAGSERAARTGNRGTRLKEGASINKSLLTLGNVINALGDKKKSGHIPYRESKL 293
Query: 311 TRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKIKAKVSR 359
TR+L+DSLGGNC T +I I+P++ S+E++ NTLK+A+RAK IK K+
Sbjct: 294 TRLLQDSLGGNCNTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQV 342
Score = 91.7 bits (228), Expect = 4e-20
Identities = 43/108 (39%), Positives = 64/108 (59%), Gaps = 2/108 (1%)
Query: 92 REIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKSKEMEFLFDRVYGPSESNQDV 151
R + + + I + E + K+S + K SKE + FD+V+GPS + +DV
Sbjct: 16 RNEKSVSDIKSTIRIIPGELGERLINTSKKSHVSLEK--SKEGTYAFDKVFGPSATQEDV 73
Query: 152 YDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGNENHKGIMYLTM 199
Y+ + K +I SLL GYNC+VF YG TG+GKT+TM G E GI+ L++
Sbjct: 74 YEETIKPLIDSLLLGYNCTVFAYGQTGSGKTYTMSGTEEEPGIIPLSL 121
>gnl|CDD|238672 cd01376, KISc_KID_like, Kinesin motor domain, KIF22/Kid-like
subgroup. Members of this group might play a role in
regulating chromosomal movement along microtubules in
mitosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 319
Score = 117 bits (294), Expect = 7e-30
Identities = 46/98 (46%), Positives = 67/98 (68%)
Query: 254 KLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLADGCRHVPYRDSKLTRI 313
KL++IDLAGSE + +R KE + IN SL L +++L G +PYR+SKLTR+
Sbjct: 222 KLNLIDLAGSEDNRRTGNEGIRLKESAAINSSLFVLSKVVDALNKGLPRIPYRESKLTRL 281
Query: 314 LKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAK 351
L+DSLGG + +M+ANIAP Y+D+ +TL +A+R+K
Sbjct: 282 LQDSLGGGSRCIMVANIAPERSFYQDTLSTLNFASRSK 319
Score = 99.1 bits (247), Expect = 2e-23
Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 18/127 (14%)
Query: 74 KVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKSKE 133
+V +RVRP EED V+ ++ D G +S+ N + E
Sbjct: 3 RVVVRVRPFLDCEEDS--SSCVRGIDSD---------------QGQAKSVEIENPRNRGE 45
Query: 134 -MEFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGNENHK 192
++ FD YG + +D++ K I+ LL G N +VF YG+TGAGKTHTMLG+ N
Sbjct: 46 TKKYQFDAFYGTECTQEDIFSREVKPIVPHLLSGQNATVFAYGSTGAGKTHTMLGDPNEP 105
Query: 193 GIMYLTM 199
G++ T+
Sbjct: 106 GLIPRTL 112
>gnl|CDD|238669 cd01373, KISc_KLP2_like, Kinesin motor domain, KLP2-like subgroup.
Members of this subgroup seem to play a role in mitosis
and meiosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 337
Score = 115 bits (290), Expect = 4e-29
Identities = 54/107 (50%), Positives = 76/107 (71%), Gaps = 4/107 (3%)
Query: 251 KMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLAD----GCRHVPYR 306
+ +L+++DLAGSER + + +R KE NINKSL LG+ I +L D RHVPYR
Sbjct: 231 RTSRLNLVDLAGSERQKDDGAEGVRLKEAKNINKSLSTLGHVIMALVDVAHGKQRHVPYR 290
Query: 307 DSKLTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKI 353
DSKLT +L+DSLGGN KT +IAN++P++ + ++ +TLK+A RAK I
Sbjct: 291 DSKLTFLLRDSLGGNAKTTIIANVSPSSKCFGETLSTLKFAQRAKLI 337
Score = 66.3 bits (162), Expect = 4e-12
Identities = 36/116 (31%), Positives = 57/116 (49%), Gaps = 23/116 (19%)
Query: 72 HMKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKS 131
+KV +R+RP ++ E DG + +K L+ DT+++ H
Sbjct: 2 AVKVVVRIRPPNEIEADGGQGQCLKKLSSDTLVW-----------HSHP----------- 39
Query: 132 KEMEFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLG 187
F FD V + + +DV+ K ++ L GYN S+F YG TG+GKT+TM+G
Sbjct: 40 -PRMFTFDHVADSNTNQEDVFQSVGKPLVEDCLSGYNGSIFAYGQTGSGKTYTMMG 94
>gnl|CDD|238671 cd01375, KISc_KIF9_like, Kinesin motor domain, KIF9-like subgroup;
might play a role in cell shape remodeling. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Kinesins are
microtubule-dependent molecular motors that play
important roles in intracellular transport and in cell
division. In most kinesins, the motor domain is found at
the N-terminus (N-type). N-type kinesins are (+)
end-directed motors, i.e. they transport cargo towards
the (+) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 334
Score = 111 bits (279), Expect = 1e-27
Identities = 48/117 (41%), Positives = 78/117 (66%), Gaps = 3/117 (2%)
Query: 238 VYVKMQ--DKATKQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINS 295
++++ + + ++ +++ KL+++DLAGSER + + KE INKSL L IN+
Sbjct: 218 IHLESRSREAGSEVVRLSKLNLVDLAGSERVSKTGVSGQVLKEAKYINKSLSFLEQVINA 277
Query: 296 LADGCR-HVPYRDSKLTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAK 351
L++ R HVPYR+SKLT +L+DSLGGNCKTVM+A I + +++ +TL++A R
Sbjct: 278 LSEKARTHVPYRNSKLTHVLRDSLGGNCKTVMLATIWVEPSNLDETLSTLRFAQRVA 334
Score = 76.4 bits (188), Expect = 2e-15
Identities = 37/126 (29%), Positives = 62/126 (49%), Gaps = 19/126 (15%)
Query: 73 MKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKSK 132
++V++RVRP K+ I P D + K +R + + +
Sbjct: 2 IQVFVRVRPTPTKQGSS-------------IKLGP--DGKSVSSNLPKDLVRGVVNNQQE 46
Query: 133 EMEFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLG---NE 189
+ F FD V+ + S ++VY+ K ++ S L+GYN ++F YG TGAGKT TM G +
Sbjct: 47 DFSFKFDGVFHNA-SQEEVYETVAKPVVDSALDGYNGTIFAYGQTGAGKTFTMTGGTESY 105
Query: 190 NHKGIM 195
+G++
Sbjct: 106 KDRGLI 111
>gnl|CDD|238664 cd01368, KISc_KIF23_like, Kinesin motor domain, KIF23-like
subgroup. Members of this group may play a role in
mitosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 345
Score = 102 bits (256), Expect = 2e-24
Identities = 42/109 (38%), Positives = 63/109 (57%), Gaps = 6/109 (5%)
Query: 249 QMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSL------ADGCRH 302
Q+ + +LS++DLAGSER + + R KE NIN SL+ LG CI L +
Sbjct: 237 QITVSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGKCIEVLRENQLSGSTNKM 296
Query: 303 VPYRDSKLTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAK 351
VPYRDSKLT + ++ G K MI N+ P A Y+++ + +K++ A+
Sbjct: 297 VPYRDSKLTHLFQNYFDGEGKARMIVNVNPCASDYDETLHVMKFSAIAQ 345
Score = 85.9 bits (213), Expect = 2e-18
Identities = 39/125 (31%), Positives = 68/125 (54%), Gaps = 13/125 (10%)
Query: 73 MKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKS- 131
+KVY+RVRP S+ E + ++++N TI P K S +++
Sbjct: 3 VKVYLRVRPLSKDELESEDEGCIEVINSTTIQLHPP-----------KGSAARKSERNGG 51
Query: 132 -KEMEFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGNEN 190
KE +F F +V+GP+ + ++ ++G+ ++ LL+G N +F YG T +GKT+TM G+
Sbjct: 52 QKETKFSFSKVFGPNTTQKEFFEGTALPLVQDLLKGKNSLLFTYGVTNSGKTYTMQGSPG 111
Query: 191 HKGIM 195
GI+
Sbjct: 112 DGGIL 116
>gnl|CDD|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional.
Length = 1320
Score = 104 bits (261), Expect = 5e-24
Identities = 51/112 (45%), Positives = 73/112 (65%), Gaps = 5/112 (4%)
Query: 250 MKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLADGC-----RHVP 304
K +++++DLAGSER + R KE NIN+SL LGN IN LA+ RH+P
Sbjct: 326 FKTSRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEISQTGKQRHIP 385
Query: 305 YRDSKLTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKIKAK 356
YRDS+LT +L++SLGGN K M+ I+P+ ++++TL++A RAK IK K
Sbjct: 386 YRDSRLTFLLQESLGGNAKLAMVCAISPSQSCKSETFSTLRFAQRAKAIKNK 437
Score = 50.7 bits (121), Expect = 1e-06
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 29/120 (24%)
Query: 71 SHMKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKK 130
S +KV +R++P ++ EE IV+ ++ D++ IN
Sbjct: 98 SGVKVIVRMKPLNKGEEG---EMIVQKMSNDSL---------------------TIN--- 130
Query: 131 SKEMEFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGNEN 190
F FD + P + +D++ ++ + L G+N SVF YG TG+GKT+TM G N
Sbjct: 131 --GQTFTFDSIADPESTQEDIFQLVGAPLVENCLAGFNSSVFAYGQTGSGKTYTMWGPAN 188
>gnl|CDD|232941 TIGR00362, DnaA, chromosomal replication initiator protein DnaA.
DnaA is involved in DNA biosynthesis; initiation of
chromosome replication and can also be transcription
regulator. The C-terminal of the family hits the pfam
bacterial DnaA (bac_dnaA) domain family. For a review,
see Kaguni (2006) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 405
Score = 34.0 bits (79), Expect = 0.13
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 8/39 (20%)
Query: 167 YNCSVFVYGATGAGKTHTM--LGN---ENHKG--IMYLT 198
YN +F+YG G GKTH + +GN EN+ ++Y++
Sbjct: 136 YN-PLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS 173
>gnl|CDD|144046 pfam00308, Bac_DnaA, Bacterial dnaA protein.
Length = 219
Score = 33.0 bits (76), Expect = 0.21
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 8/41 (19%)
Query: 165 EGYNCSVFVYGATGAGKTHTM--LGNE---NHKG--IMYLT 198
+ YN +F+YG G GKTH + +GN N ++YLT
Sbjct: 32 KAYN-PLFIYGGVGLGKTHLLHAIGNYALRNFPNLRVVYLT 71
>gnl|CDD|234667 PRK00149, dnaA, chromosomal replication initiation protein;
Reviewed.
Length = 401
Score = 33.2 bits (77), Expect = 0.21
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 8/39 (20%)
Query: 167 YNCSVFVYGATGAGKTHTM--LGN---ENHKG--IMYLT 198
YN +F+YG G GKTH + +GN E + ++Y+T
Sbjct: 99 YN-PLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT 136
>gnl|CDD|226465 COG3956, COG3956, Protein containing tetrapyrrole methyltransferase
domain and MazG-like (predicted pyrophosphatase) domain
[General function prediction only].
Length = 488
Score = 32.5 bits (74), Expect = 0.43
Identities = 22/82 (26%), Positives = 30/82 (36%), Gaps = 16/82 (19%)
Query: 97 ILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKSKEMEFLFDRVYGPSESNQDVYDGST 156
+ N+D + K H V + L + K S FD +Y E + VYD
Sbjct: 26 LKNQDNLYVRTKD-------HPVIEELDEEGIKFS-----FFDDIYETHEQFEAVYD--- 70
Query: 157 KDIIASLLEGYNCSVFVYGATG 178
I A L+E VY G
Sbjct: 71 -FIAADLVEAAKEKDIVYAVPG 91
>gnl|CDD|180161 PRK05609, nusG, transcription antitermination protein NusG;
Validated.
Length = 181
Score = 31.3 bits (72), Expect = 0.57
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 119 VKQSLRDINKKKSKEMEFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFV 173
VK++L N+ ++ ME L V P+E +V +G K + GY V V
Sbjct: 21 VKENLE--NRIETLGMEDLIGEVLVPTEEVVEVKNGKKKKVERKFFPGY---VLV 70
>gnl|CDD|221970 pfam13191, AAA_16, AAA ATPase domain. This family of domains
contain a P-loop motif that is characteristic of the AAA
superfamily.
Length = 154
Score = 30.6 bits (69), Expect = 0.83
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 157 KDIIASLLEGYNCSVFVYGATGAGKTHTM 185
D + G SV + G +G GKT +
Sbjct: 13 LDALRRARSGGPPSVLLTGPSGTGKTSLL 41
>gnl|CDD|223666 COG0593, DnaA, ATPase involved in DNA replication initiation [DNA
replication, recombination, and repair].
Length = 408
Score = 31.1 bits (71), Expect = 1.1
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 144 PSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTM--LGNE 189
SN+ Y + K + + YN +F+YG G GKTH + +GNE
Sbjct: 91 VGPSNRLAYAAA-KAVAENPGGAYN-PLFIYGGVGLGKTHLLQAIGNE 136
>gnl|CDD|239750 cd03781, MATH_TRAF4, Tumor Necrosis Factor Receptor
(TNFR)-Associated Factor (TRAF) family, TRAF4
subfamily, TRAF domain, C-terminal MATH subdomain;
composed of proteins with similarity to human TRAF4,
including the Drosophila protein DTRAF1. TRAF molecules
serve as adapter proteins that link TNFRs and
downstream kinase cascades resulting in the activation
of transcription factors and the regulation of cell
survival, proliferation and stress responses. TRAF4 is
highly expressed during embryogenesis, especially in
the central and peripheral nervous system. Studies
using TRAF4-deficient mice show that TRAF4 is required
for neurogenesis, as well as the development of the
trachea and the axial skeleton. In addition, TRAF4
augments nuclear factor-kappaB activation triggered by
GITR (glucocorticoid-induced TNFR), a receptor
expressed in T-cells, B-cells and macrophages. It also
participates in counteracting the signaling mediated by
Toll-like receptors through its association with TRAF6
and TRIF. DTRAF1 plays a pivotal role in the
development of eye imaginal discs and photosensory
neuron arrays in Drosophila. TRAF4 contains a RING
finger domain, seven zinc finger domains, and a TRAF
domain. The TRAF domain can be divided into a more
divergent N-terminal alpha helical region (TRAF-N), and
a highly conserved C-terminal MATH subdomain (TRAF-C)
with an eight-stranded beta-sandwich structure. TRAF-N
mediates trimerization while TRAF-C interacts with
receptors.
Length = 154
Score = 29.8 bits (67), Expect = 1.5
Identities = 10/15 (66%), Positives = 11/15 (73%)
Query: 30 PGEQSHMKVYIRVRP 44
GE SH+ VYIRV P
Sbjct: 50 SGEGSHLSVYIRVLP 64
Score = 28.6 bits (64), Expect = 3.8
Identities = 10/15 (66%), Positives = 12/15 (80%)
Query: 67 TGEQSHMKVYIRVRP 81
+GE SH+ VYIRV P
Sbjct: 50 SGEGSHLSVYIRVLP 64
>gnl|CDD|234203 TIGR03420, DnaA_homol_Hda, DnaA regulatory inactivator Hda.
Members of this protein family are Hda (Homologous to
DnaA). These proteins are about half the length of DnaA
and homologous over length of Hda. In the model species
Escherichia coli, the initiation of DNA replication
requires DnaA bound to ATP rather than ADP; Hda helps
facilitate the conversion of DnaA-ATP to DnaA-ADP [DNA
metabolism, DNA replication, recombination, and repair].
Length = 226
Score = 30.2 bits (69), Expect = 1.7
Identities = 9/33 (27%), Positives = 18/33 (54%), Gaps = 5/33 (15%)
Query: 170 SVFVYGATGAGKTHTMLG-----NENHKGIMYL 197
++++G +G+GK+H + E K +YL
Sbjct: 40 FLYLWGESGSGKSHLLQAACAAAEERGKSAIYL 72
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only detects
a fraction of this vast family. The poorly conserved
N-terminal helix is missing from the alignment.
Length = 148
Score = 29.3 bits (65), Expect = 1.9
Identities = 7/47 (14%), Positives = 13/47 (27%), Gaps = 5/47 (10%)
Query: 170 SVFVYGATGAGKTHTMLG-----NENHKGIMYLTMGIRNRVSALTRQ 211
+ + G G+GKT G++Y+
Sbjct: 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL 50
>gnl|CDD|130565 TIGR01501, MthylAspMutase, methylaspartate mutase, S subunit. This
model represents the S (sigma) subunit of
methylaspartate mutase (glutamate mutase), a
cobalamin-dependent enzyme that catalyzes the first step
in a pathway of glutamate fermentation [Energy
metabolism, Amino acids and amines, Energy metabolism,
Fermentation].
Length = 134
Score = 29.1 bits (65), Expect = 2.1
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 120 KQSLRDINKKKSKEMEFLFDRVYGPSESNQDVYDGSTKDI 159
KQ D+ +K+ KEM F DRV+ P + V KD+
Sbjct: 96 KQDFPDV-EKRFKEMGF--DRVFAPGTPPEVVIADLKKDL 132
>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC, RecA-like,
VirD4-like, PilT-like, and SF1/2 helicases. Members of
the AAA+ ATPases function as molecular chaperons, ATPase
subunits of proteases, helicases, or nucleic-acid
stimulated ATPases. The AAA+ proteins contain several
distinct features in addition to the conserved
alpha-beta-alpha core domain structure and the Walker A
and B motifs of the P-loop NTPases.
Length = 151
Score = 28.3 bits (63), Expect = 4.5
Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 5/49 (10%)
Query: 157 KDIIASLLEGYNCSVFVYGATGAGKTHTM--LGNENHKG---IMYLTMG 200
+ + +L ++ +YG G GKT + NE + +YL
Sbjct: 8 EALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNAS 56
>gnl|CDD|225363 COG2804, PulE, Type II secretory pathway, ATPase PulE/Tfp pilus
assembly pathway, ATPase PilB [Cell motility and
secretion / Intracellular trafficking and secretion].
Length = 500
Score = 29.2 bits (66), Expect = 5.0
Identities = 11/49 (22%), Positives = 19/49 (38%)
Query: 137 LFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTM 185
+ D+ + + + LL + V G TG+GKT T+
Sbjct: 227 ILDKDQVILDLEKLGMSPFQLARLLRLLNRPQGLILVTGPTGSGKTTTL 275
>gnl|CDD|188566 TIGR04051, rSAM_NirJ, heme d1 biosynthesis radical SAM protein
NirJ. Heme d1 occurs in the cytochrome cd1 subunit of
nitrite reductase in species such as Pseudomonas
stutzeri. NirJ is a radical SAM protein involved in its
bioynthesis. In a number of species, distinct genes
NirJ1 and NirJ2 are found in similar genomic regions;
this model describe authentic NirJ from genomes with
NirJ only [Biosynthesis of cofactors, prosthetic groups,
and carriers, Heme, porphyrin, and cobalamin].
Length = 354
Score = 28.9 bits (65), Expect = 5.0
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 8/55 (14%)
Query: 294 NSLADGC-------RHVPYRDSKLTRILKDSLGGNCKTVMIANIAPTALSYEDSY 341
N+ ADG R P + + L L GGN V +ANI + D+Y
Sbjct: 222 NNDADGVYLLQWAKRRFPEQLAHLRARLAA-WGGNASGVGVANIDNLGEVHPDTY 275
>gnl|CDD|183521 PRK12422, PRK12422, chromosomal replication initiation protein;
Provisional.
Length = 445
Score = 28.6 bits (64), Expect = 5.9
Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 5/33 (15%)
Query: 171 VFVYGATGAGKTHTMLG-----NENHKGIMYLT 198
++++G G+GKTH M E+ I+Y+
Sbjct: 144 IYLFGPEGSGKTHLMQAAVHALRESGGKILYVR 176
>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein;
Provisional.
Length = 617
Score = 28.6 bits (64), Expect = 6.6
Identities = 10/17 (58%), Positives = 13/17 (76%), Gaps = 1/17 (5%)
Query: 167 YNCSVFVYGATGAGKTH 183
YN +F+YG +G GKTH
Sbjct: 314 YN-PLFIYGESGLGKTH 329
>gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton].
Length = 1463
Score = 28.9 bits (65), Expect = 6.8
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 7/39 (17%)
Query: 163 LLEGYNCSVFVYGATGAGKTHTMLGNENHKGIM-YLTMG 200
L E N ++ + G +GAGKT EN K IM YL
Sbjct: 147 LSEKENQTIIISGESGAGKT------ENAKRIMQYLASV 179
>gnl|CDD|223328 COG0250, NusG, Transcription antiterminator [Transcription].
Length = 178
Score = 28.1 bits (63), Expect = 6.9
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 5/55 (9%)
Query: 119 VKQSLRDINKKKSKEMEFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFV 173
VK++L K + ME L V P+E +V + L GY V V
Sbjct: 18 VKENLE--RKAELLGMEDLIFEVLVPTEEVVEVKGKRKVIVERKLFPGY---VLV 67
>gnl|CDD|238550 cd01130, VirB11-like_ATPase, Type IV secretory pathway component
VirB11, and related ATPases. The homohexamer, VirB11 is
one of eleven Vir proteins, which are required for
T-pilus biogenesis and virulence in the transfer of
T-DNA from the Ti (tumor-inducing) plasmid of bacterial
to plant cells. The pilus is a fibrous cell surface
organelle, which mediates adhesion between bacteria
during conjugative transfer or between bacteria and host
eukaryotic cells during infection. VirB11- related
ATPases include the archaeal flagella biosynthesis
protein and the pilus assembly proteins CpaF/TadA and
TrbB. This alignment contains the C-terminal domain,
which is the ATPase.
Length = 186
Score = 28.0 bits (63), Expect = 7.1
Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 151 VYDGSTKDIIASLLE---GYNCSVFVYGATGAGKTHTM 185
+ G+ + A+ L ++ + G TG+GKT +
Sbjct: 5 IAQGTFSPLQAAYLWLAVEARKNILISGGTGSGKTTLL 42
>gnl|CDD|215832 pfam00270, DEAD, DEAD/DEAH box helicase. Members of this family
include the DEAD and DEAH box helicases. Helicases are
involved in unwinding nucleic acids. The DEAD box
helicases are involved in various aspects of RNA
metabolism, including nuclear transcription, pre mRNA
splicing, ribosome biogenesis, nucleocytoplasmic
transport, translation, RNA decay and organellar gene
expression.
Length = 169
Score = 27.6 bits (62), Expect = 7.6
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 157 KDIIASLLEGYNCSVFVYGATGAGKT 182
I ++L G + V V TG+GKT
Sbjct: 5 AQAIPAILSGKD--VLVQAPTGSGKT 28
>gnl|CDD|226947 COG4581, COG4581, Superfamily II RNA helicase [DNA replication,
recombination, and repair].
Length = 1041
Score = 28.5 bits (64), Expect = 8.3
Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 5/65 (7%)
Query: 121 QSLRDINKKKSKEMEFLFDRVYGPSESNQDV---YDGSTKDIIASLLEGYNCSVFVYGAT 177
+ L D+ +M + + + ++ D ++ IA L G SV V T
Sbjct: 86 KELSDVAVPDDYDMVPDAESPFDLAPPAREYPFELDPFQQEAIAILERGE--SVLVCAPT 143
Query: 178 GAGKT 182
+GKT
Sbjct: 144 SSGKT 148
>gnl|CDD|224391 COG1474, CDC6, Cdc6-related protein, AAA superfamily ATPase [DNA
replication, recombination, and repair /
Posttranslational modification, protein turnover,
chaperones].
Length = 366
Score = 28.1 bits (63), Expect = 9.1
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 170 SVFVYGATGAGKTHTM 185
++ +YG TG GKT T+
Sbjct: 44 NIIIYGPTGTGKTATV 59
>gnl|CDD|224401 COG1484, DnaC, DNA replication protein [DNA replication,
recombination, and repair].
Length = 254
Score = 27.8 bits (62), Expect = 9.3
Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 10/82 (12%)
Query: 123 LRDINKKKSKEMEFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKT 182
LR + K E FD ++ + ++ G N + + G G GKT
Sbjct: 65 LRSASFPAKKTFEE-FD-FEFQPGIDKKALE-DLASLVEFFERGEN--LVLLGPPGVGKT 119
Query: 183 H--TMLGNE-NHKGI--MYLTM 199
H +GNE GI +++T
Sbjct: 120 HLAIAIGNELLKAGISVLFITA 141
>gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily.
Length = 201
Score = 27.8 bits (62), Expect = 9.6
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 157 KDIIASLLEGYNCSVFVYGATGAGKTHTML 186
K+ I +LL G V + TG+GKT L
Sbjct: 14 KEAIEALLSGLR-DVILAAPTGSGKTLAAL 42
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.132 0.381
Gapped
Lambda K H
0.267 0.0643 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,622,974
Number of extensions: 1822320
Number of successful extensions: 1628
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1594
Number of HSP's successfully gapped: 78
Length of query: 409
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 310
Effective length of database: 6,546,556
Effective search space: 2029432360
Effective search space used: 2029432360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.1 bits)