RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4062
(409 letters)
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding,
microtubule binding, ATP- cell projection, cytoskeleton,
glycoprotein, microtubule; HET: ADP; 2.20A {Homo
sapiens}
Length = 355
Score = 332 bits (853), Expect = e-112
Identities = 137/349 (39%), Positives = 209/349 (59%), Gaps = 65/349 (18%)
Query: 69 EQSHMKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINK 128
HMKV +RVRP++ KE+ ++V ++++ ++FDPKQ++ FF HG K + +++ K
Sbjct: 8 LCHHMKVVVRVRPENTKEKAAGFHKVVHVVDKHILVFDPKQEEVSFF-HGKKTTNQNVIK 66
Query: 129 KKSKEMEFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGN 188
K++K+++F+FD V+ + + +V++ +TK I+ S L GYNC+V YGATGAGKTHTMLG+
Sbjct: 67 KQNKDLKFVFDAVFDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGS 126
Query: 189 ENHKGIMYLTM-GIRNRVSALTRQM-CTMRM-----Y----------KTCLILRRKP--- 228
+ G+MYLTM + + + + C+ + Y L +R
Sbjct: 127 ADEPGVMYLTMLHLYKCMDEIKEEKICSTAVSYLEVYNEQIRDLLVNSGPLAVREDTQKG 186
Query: 229 ------------SICEKMQLM--------------------------VYVKMQDK---AT 247
S E + L+ +Y++ QDK
Sbjct: 187 VVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLRQQDKTASIN 246
Query: 248 KQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLADGCR---HVP 304
+ +++ K+S+IDLAGSERA+ + + RF EG+NIN+SLLALGN IN+LAD R H+P
Sbjct: 247 QNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALADSKRKNQHIP 306
Query: 305 YRDSKLTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKI 353
YR+SKLTR+LKDSLGGNC+T+MIA ++P+++ Y+D+YNTLKYA RAK I
Sbjct: 307 YRNSKLTRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural
genomics consortium domain, ADP, SGC, ATP-binding,
DNA-binding, microtubule, MO protein; HET: ADP; 2.30A
{Homo sapiens}
Length = 388
Score = 313 bits (804), Expect = e-104
Identities = 94/353 (26%), Positives = 148/353 (41%), Gaps = 82/353 (23%)
Query: 68 GEQSHMKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDIN 127
G + ++V +R+RP V+ ++ ++
Sbjct: 18 GPPARVRVAVRLRPFVDGTAGASDPPCVRGMDSCSLEIANW------------------- 58
Query: 128 KKKSKEMEFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLG 187
+ + +++ FD YG + QD+Y GS + I+ LLEG N SV YG TGAGKTHTMLG
Sbjct: 59 RNHQETLKYQFDAFYGERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLG 118
Query: 188 NENHKGIMYLTM-----GIRNRVSALTRQMCTMRM-----Y-----------KTCLILRR 226
+ G++ + R + ++ M Y L++R
Sbjct: 119 SPEQPGVIPRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLLDPASGDLVIRE 178
Query: 227 KP---------------SICEKMQLM--------------------------VYVKMQDK 245
S + + V V +++
Sbjct: 179 DCRGNILIPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRER 238
Query: 246 -ATKQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLADGCRHVP 304
A + + KL +IDLAGSE + +R KE IN SL LG +++L G VP
Sbjct: 239 LAPFRQREGKLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGLPRVP 298
Query: 305 YRDSKLTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKIKAKV 357
YRDSKLTR+L+DSLGG+ +++IANIAP Y D+ + L +A R+K++ +
Sbjct: 299 YRDSKLTRLLQDSLGGSAHSILIANIAPERRFYLDTVSALNFAARSKEVINRP 351
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport
protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Length = 360
Score = 204 bits (520), Expect = 3e-62
Identities = 50/125 (40%), Positives = 76/125 (60%), Gaps = 4/125 (3%)
Query: 236 LMVYVKMQDKATKQMKMVKLSMIDLAGSERAAANSSNQMRFK-EGSNINKSLLALGNCIN 294
L + +K +K + K++ IDLAGSER A S + + +G+NIN+SLLAL CI
Sbjct: 216 LNIDLKDINK---NTSLGKIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIR 272
Query: 295 SLADGCRHVPYRDSKLTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKIK 354
++ H+P+RDS+LT++L+D G K++MIANI+PT E + NTL+Y++R K
Sbjct: 273 AMDSDKNHIPFRDSELTKVLRDIFVGKSKSIMIANISPTISCCEQTLNTLRYSSRVKNKG 332
Query: 355 AKVSR 359
Sbjct: 333 NSKLE 337
Score = 129 bits (326), Expect = 4e-34
Identities = 40/133 (30%), Positives = 61/133 (45%), Gaps = 19/133 (14%)
Query: 73 MKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKSK 132
+KV +R RP S+ E+ +I+ + N T+ D + + K +
Sbjct: 2 IKVVVRKRPLSELEKKKKDSDIITVKNNCTLYIDEPRYKVD-------------MTKYIE 48
Query: 133 EMEFLFDRVYGPSESNQDVYDGSTKDIIASLLE-GYNCSVFVYGATGAGKTHTMLG---- 187
EF+ D+V+ + N VY+ + K +I L E G CS F YG TG+GKT+TMLG
Sbjct: 49 RHEFIVDKVFDDTVDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGSQPY 108
Query: 188 -NENHKGIMYLTM 199
+ GI
Sbjct: 109 GQSDTPGIFQYAA 121
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule,
ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Length = 350
Score = 198 bits (507), Expect = 1e-60
Identities = 58/123 (47%), Positives = 86/123 (69%), Gaps = 2/123 (1%)
Query: 237 MVYVKMQDKATKQ--MKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCIN 294
MV ++ + + +++ KL+++DLAGSER + + EG+ IN SL ALG I+
Sbjct: 217 MVRIECSEVIENKEVIRVGKLNLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVIS 276
Query: 295 SLADGCRHVPYRDSKLTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKIK 354
L +G H+PYRDSKLTR+L+DSLGGN KT+M ANI+P + +Y+++ +TL+YA RAK+IK
Sbjct: 277 KLVEGATHIPYRDSKLTRLLQDSLGGNSKTLMCANISPASTNYDETMSTLRYADRAKQIK 336
Query: 355 AKV 357
K
Sbjct: 337 NKP 339
Score = 125 bits (317), Expect = 5e-33
Identities = 38/130 (29%), Positives = 62/130 (47%), Gaps = 13/130 (10%)
Query: 71 SHMKVYIRVRPQSQKEEDGCHREIVKIL-NRDTIIFDPKQDDSEFFFHGVKQSLRDINKK 129
++KV +R RP + +E I+++ +I DP + + +
Sbjct: 4 DNIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEK------------SATQA 51
Query: 130 KSKEMEFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGNE 189
K F FD VY + N ++ S K +I ++LEG+N ++F YG TGAGKT TM GN+
Sbjct: 52 KKVPRTFTFDAVYDQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGGNK 111
Query: 190 NHKGIMYLTM 199
G + +
Sbjct: 112 EEPGAIPNSF 121
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics,
structural genomics consortium, SGC, structural protein;
HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Length = 387
Score = 199 bits (507), Expect = 4e-60
Identities = 51/123 (41%), Positives = 75/123 (60%), Gaps = 7/123 (5%)
Query: 236 LMVYVKMQDKATKQMKMVKLSMIDLAGSERAAANSSNQMRFK-EGSNINKSLLALGNCIN 294
+ ++ + + K S++DLAG+ER A SS + + EG+ INKSLLAL CI
Sbjct: 268 FQIILRAKGR-----MHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIR 322
Query: 295 SLADGCRHVPYRDSKLTRILKDS-LGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKI 353
+L H P+R+SKLT++L+DS +G N +T MIA I+P S E + NTL+YA R K++
Sbjct: 323 ALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIATISPGISSCEYTLNTLRYADRVKEL 382
Query: 354 KAK 356
Sbjct: 383 SPH 385
Score = 133 bits (337), Expect = 2e-35
Identities = 32/137 (23%), Positives = 61/137 (44%), Gaps = 19/137 (13%)
Query: 69 EQSHMKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINK 128
E+ + V +R RP +++E +++ I ++ ++ + +
Sbjct: 49 EEHRICVCVRKRPLNKQELAKKEIDVISIPSKCLLLVHEPKLKVD-------------LT 95
Query: 129 KKSKEMEFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGN 188
K + F FD + + SN+ VY + + ++ ++ EG + F YG TG+GKTHTM G+
Sbjct: 96 KYLENQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGD 155
Query: 189 ------ENHKGIMYLTM 199
KGI +
Sbjct: 156 LSGKAQNASKGIYAMAS 172
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P;
HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB:
1v8j_A* 2gry_A*
Length = 410
Score = 199 bits (509), Expect = 4e-60
Identities = 51/126 (40%), Positives = 75/126 (59%), Gaps = 7/126 (5%)
Query: 236 LMVYVKMQDKATKQMKMVKLSMIDLAGSERAAANSSNQMRFK-EGSNINKSLLALGNCIN 294
+ ++ + + K S++DLAG+ER A SS + + EG+ INKSLLAL CI
Sbjct: 288 FQILLRTKGR-----LHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIR 342
Query: 295 SLADGCRHVPYRDSKLTRILKDS-LGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKI 353
+L H P+R+SKLT++L+DS +G N +T MIA I+P S E + NTL+YA R K++
Sbjct: 343 ALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKEL 402
Query: 354 KAKVSR 359
Sbjct: 403 SHHHHH 408
Score = 133 bits (337), Expect = 3e-35
Identities = 42/205 (20%), Positives = 81/205 (39%), Gaps = 40/205 (19%)
Query: 5 KRDIERAFSPRVSKVRPRSTSSSRTPGEQSHM----KVYIRVRPQSQKEEDGCHSVMTTL 60
KR+ +RA + + R + SS E + M +V + P + + H +
Sbjct: 18 KREEKRAQNSELRIKRAQEYDSSFPNWEFARMIKEFRVTMECSPLTVTDPIEEHRI---- 73
Query: 61 ELGIIHTGEQSHMKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVK 120
V +R RP +++E +++ + ++ ++ + +
Sbjct: 74 -------------CVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVD------- 113
Query: 121 QSLRDINKKKSKEMEFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAG 180
K + F FD + + SN+ VY + + ++ ++ EG + F YG TG+G
Sbjct: 114 ------LTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSG 167
Query: 181 KTHTMLGN------ENHKGIMYLTM 199
KTHTM G+ KGI +
Sbjct: 168 KTHTMGGDLSGKSQNASKGIYAMAS 192
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain;
HET: ADP; 1.60A {Homo sapiens} PDB: 2xt3_A*
Length = 344
Score = 191 bits (489), Expect = 6e-58
Identities = 59/126 (46%), Positives = 82/126 (65%), Gaps = 3/126 (2%)
Query: 229 SICEKMQLMVYVKMQDKATKQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLA 288
++ + + ++ A Q+ + K +DLAGSER S R KE IN SLLA
Sbjct: 219 TVTLEQRGRAPSRLPRPAPGQLLVSKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLA 278
Query: 289 LGNCINSLADGCR---HVPYRDSKLTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLK 345
LGN I++L D R H+PYRDSK+TRILKDSLGGN KTVMIA ++P++ ++++ NTL
Sbjct: 279 LGNVISALGDPQRRGSHIPYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLN 338
Query: 346 YATRAK 351
YA+RA+
Sbjct: 339 YASRAQ 344
Score = 117 bits (295), Expect = 8e-30
Identities = 32/138 (23%), Positives = 57/138 (41%), Gaps = 30/138 (21%)
Query: 68 GEQSHMKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDIN 127
E++ ++V +RVRP KE H+ +++ + +
Sbjct: 8 AEEAPVRVALRVRPLLPKELLHGHQSCLQVEPGLGRVT--------------------LG 47
Query: 128 KKKSKEMEFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLG 187
+ + F F V + VY + ++ + EG+N +VF YG TG+GKT+TM
Sbjct: 48 RDRH----FGFHVVLAEDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGE 103
Query: 188 N------ENHKGIMYLTM 199
E+ +GI+ M
Sbjct: 104 ASVASLLEDEQGIVPRAM 121
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics,
structural genomics consortium, SGC, ATP-binding,
microtubule, motor protein; HET: ADP; 2.10A {Homo
sapiens}
Length = 354
Score = 191 bits (488), Expect = 1e-57
Identities = 60/128 (46%), Positives = 82/128 (64%), Gaps = 8/128 (6%)
Query: 235 QLMVYVKMQDKATKQ--MKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNC 292
++ + + D + K+ KLS++DLAGSERA + R KEGSNINKSL LG
Sbjct: 224 KITLTHTLYDVKSGTSGEKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLV 283
Query: 293 INSLADGC------RHVPYRDSKLTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKY 346
I++LAD + VPYRDS LT +LKDSLGGN KT M+A ++P A +Y+++ +TL+Y
Sbjct: 284 ISALADQSAGKNKNKFVPYRDSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRY 343
Query: 347 ATRAKKIK 354
A RAK
Sbjct: 344 ADRAKHHH 351
Score = 119 bits (301), Expect = 1e-30
Identities = 30/137 (21%), Positives = 61/137 (44%), Gaps = 21/137 (15%)
Query: 71 SHMKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKK 130
S +KV +R+RP +++E D + +V + I+ + S+ +
Sbjct: 1 SKVKVAVRIRPMNRRETDLHTKCVVDVDANKVILNPVNTNLSK-------------GDAR 47
Query: 131 SKEMEFLFDRVYG-------PSESNQ-DVYDGSTKDIIASLLEGYNCSVFVYGATGAGKT 182
+ F +D + + Q V+ ++I+ + +GYN +F YG TG+GK+
Sbjct: 48 GQPKVFAYDHCFWSMDESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKS 107
Query: 183 HTMLGNENHKGIMYLTM 199
+TM+G + G++
Sbjct: 108 YTMMGTADQPGLIPRLC 124
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP;
1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A*
2kin_A* 3kin_A*
Length = 325
Score = 190 bits (485), Expect = 1e-57
Identities = 53/118 (44%), Positives = 80/118 (67%)
Query: 236 LMVYVKMQDKATKQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINS 295
++ VK ++ T+Q KL ++DLAGSE+ + + E NINKSL ALGN I++
Sbjct: 208 FLINVKQENTQTEQKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISA 267
Query: 296 LADGCRHVPYRDSKLTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKI 353
LA+G +VPYRDSK+TRIL+DSLGGNC+T ++ +P++ + ++ +TL + RAK I
Sbjct: 268 LAEGSTYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTI 325
Score = 111 bits (279), Expect = 8e-28
Identities = 39/134 (29%), Positives = 60/134 (44%), Gaps = 29/134 (21%)
Query: 69 EQSHMKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINK 128
+ ++KV R RP ++ E + + I K DT++ K
Sbjct: 5 AECNIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVIASKP------------------- 45
Query: 129 KKSKEMEFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLG- 187
+ FDRV+ S S + VY+ K I+ +LEGYN ++F YG T +GKTHTM G
Sbjct: 46 -------YAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGK 98
Query: 188 --NENHKGIMYLTM 199
+ GI+ +
Sbjct: 99 LHDPEGMGIIPRIV 112
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker,
cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP:
c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A*
2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A*
2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A*
1q0b_A* ...
Length = 359
Score = 187 bits (477), Expect = 5e-56
Identities = 55/123 (44%), Positives = 83/123 (67%), Gaps = 1/123 (0%)
Query: 236 LMVYVKMQDKATKQ-MKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCIN 294
+ +++K ++ +K+ KL+++DLAGSE + + R +E NIN+SLL LG I
Sbjct: 232 VTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVIT 291
Query: 295 SLADGCRHVPYRDSKLTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKIK 354
+L + HVPYR+SKLTRIL+DSLGG +T +IA I+P +L+ E++ +TL+YA RAK I
Sbjct: 292 ALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNIL 351
Query: 355 AKV 357
K
Sbjct: 352 NKP 354
Score = 103 bits (258), Expect = 1e-24
Identities = 37/137 (27%), Positives = 55/137 (40%), Gaps = 20/137 (14%)
Query: 69 EQSHMKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINK 128
+ +++V +R RP + E IV+ + ++
Sbjct: 6 KGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLAD--------------- 50
Query: 129 KKSKEMEFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLG- 187
KS + FD V+G S DVY I+ ++ GYNC++F YG TG GKT TM G
Sbjct: 51 -KSSRKTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGE 109
Query: 188 ---NENHKGIMYLTMGI 201
NE + GI
Sbjct: 110 RSPNEEYTWEEDPLAGI 126
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11,
conformation, nucleotide, ATP-binding, microtubule,
motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP:
c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Length = 369
Score = 187 bits (477), Expect = 6e-56
Identities = 54/137 (39%), Positives = 85/137 (62%), Gaps = 2/137 (1%)
Query: 236 LMVYVKMQDKATKQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINS 295
+ V ++ + T+ + KLS +DLAGSER + S + KE +INKSL ALG+ I++
Sbjct: 210 VSVIIESTNLQTQAIARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISA 269
Query: 296 LADGCRHVPYRDSKLTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKIK- 354
L+ G +H+PYR+ KLT ++ DSLGGN KT+M NI+P + ++++N+L YA+R + I
Sbjct: 270 LSSGNQHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRSIVN 329
Query: 355 -AKVSRTFKSGAHFKLE 370
+ + K A K
Sbjct: 330 DPSKNVSSKEVARLKKL 346
Score = 114 bits (287), Expect = 1e-28
Identities = 34/126 (26%), Positives = 61/126 (48%), Gaps = 22/126 (17%)
Query: 74 KVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKSKE 133
+VY R+RP +KE R ++ ++ T+ K K
Sbjct: 8 RVYCRLRPLCEKEIIAKERNAIRSVDEFTVE---------------------HLWKDDKA 46
Query: 134 MEFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGNENHKG 193
+ ++DRV+ + + DV++ TK ++ S ++GYN +F YG TG+GKT T+ G +++ G
Sbjct: 47 KQHMYDRVFDGNATQDDVFE-DTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNPG 105
Query: 194 IMYLTM 199
+ M
Sbjct: 106 LTPRAM 111
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A
{Drosophila melanogaster} PDB: 2y5w_A*
Length = 365
Score = 185 bits (471), Expect = 4e-55
Identities = 52/122 (42%), Positives = 79/122 (64%), Gaps = 1/122 (0%)
Query: 237 MVYVKMQDKATKQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSL 296
++ VK ++ ++ KL ++DLAGSE+ + + E NINKSL ALGN I++L
Sbjct: 216 LINVKQENLENQKKLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISAL 275
Query: 297 ADG-CRHVPYRDSKLTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKIKA 355
ADG H+PYRDSKLTRIL++SLGGN +T ++ +P + + ++ +TL + RAK +K
Sbjct: 276 ADGNKTHIPYRDSKLTRILQESLGGNARTTIVICCSPASFNESETKSTLDFGRRAKTVKN 335
Query: 356 KV 357
V
Sbjct: 336 VV 337
Score = 103 bits (259), Expect = 8e-25
Identities = 37/124 (29%), Positives = 54/124 (43%), Gaps = 26/124 (20%)
Query: 74 KVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKSKE 133
KV R RP + EE + +VK N
Sbjct: 14 KVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISIAGKV--------------------- 52
Query: 134 MEFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLG---NEN 190
+LFD+V+ P+ S + VY+ + K I+ +L GYN ++F YG T +GKTHTM G +
Sbjct: 53 --YLFDKVFKPNASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSV 110
Query: 191 HKGI 194
+GI
Sbjct: 111 KQGI 114
Score = 33.0 bits (76), Expect = 0.14
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 25 SSSRTPGEQSHMKVYIRVRPQSQKE-EDGCHSVMT 58
S+ R + +KV R RP + E + G V+
Sbjct: 2 SAEREIPAEDSIKVVCRFRPLNDSEEKAGSKFVVK 36
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis,
GTP-binding, motor protein, cell division, cell cycle,
microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A
{Drosophila melanogaster}
Length = 373
Score = 185 bits (471), Expect = 5e-55
Identities = 54/125 (43%), Positives = 81/125 (64%), Gaps = 4/125 (3%)
Query: 237 MVYVKMQDKATK---QMKMVKLSMIDLAGSERAAA-NSSNQMRFKEGSNINKSLLALGNC 292
+ V +++ + +K+ KL+++DLAGSE + + +R +E NIN+SLL LG
Sbjct: 241 SIVVHIRENGIEGEDMLKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRV 300
Query: 293 INSLADGCRHVPYRDSKLTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKK 352
I +L D HVPYR+SKLTR+L++SLGG KT +IA I+P E++ +TL+YA RAK
Sbjct: 301 ITALVDRAPHVPYRESKLTRLLQESLGGRTKTSIIATISPGHKDIEETLSTLEYAHRAKN 360
Query: 353 IKAKV 357
I+ K
Sbjct: 361 IQNKP 365
Score = 107 bits (270), Expect = 3e-26
Identities = 41/123 (33%), Positives = 62/123 (50%), Gaps = 19/123 (15%)
Query: 68 GEQSHMKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDIN 127
+++VY+RVRP + +E E+V ++ ++ + ++
Sbjct: 20 KSNQNIQVYVRVRPLNSRERCIRSAEVVDVVGPREVV-----------------TRHTLD 62
Query: 128 KKKSKEMEFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLG 187
K +K+ F FDR +GP DVY +I +L GYNC+VF YG TG GKTHTM+G
Sbjct: 63 SKLTKK--FTFDRSFGPESKQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMVG 120
Query: 188 NEN 190
NE
Sbjct: 121 NET 123
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A
{Neurospora crassa} SCOP: c.37.1.9
Length = 355
Score = 184 bits (470), Expect = 6e-55
Identities = 53/122 (43%), Positives = 79/122 (64%), Gaps = 1/122 (0%)
Query: 237 MVYVKMQDKATKQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSL 296
++ + ++ T K +L ++DLAGSE+ ++ +E INKSL ALG IN+L
Sbjct: 213 VITITQKNVETGSAKSGQLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINAL 272
Query: 297 ADG-CRHVPYRDSKLTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKIKA 355
DG HVPYRDSKLTRIL++SLGGN +T +I N +P++ + ++ +TL++ RAK IK
Sbjct: 273 TDGKSSHVPYRDSKLTRILQESLGGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIKN 332
Query: 356 KV 357
K
Sbjct: 333 KA 334
Score = 107 bits (270), Expect = 2e-26
Identities = 40/125 (32%), Positives = 58/125 (46%), Gaps = 26/125 (20%)
Query: 74 KVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKSKE 133
KV R RPQ++ E + + IV DT D K+ F
Sbjct: 9 KVVARFRPQNRVEIESGGQPIVTFQGPDTCTVDSKEAQGSF------------------- 49
Query: 134 MEFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLG----NE 189
FDRV+ S D++D S K + +L GYN +VF YG TGAGK++TM+G +
Sbjct: 50 ---TFDRVFDMSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDP 106
Query: 190 NHKGI 194
+ +G+
Sbjct: 107 DGRGV 111
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule,
ADP, nucleotide-binding protein, ATP-binding, coiled
coil, motor protein; HET: ADP; 1.90A {Drosophila
melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Length = 344
Score = 183 bits (467), Expect = 9e-55
Identities = 34/110 (30%), Positives = 57/110 (51%)
Query: 247 TKQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLADGCRHVPYR 306
+ +++++DLAGSE + +EG NIN LL++ + S+A G +PYR
Sbjct: 229 KSKTHHSRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGHTVIPYR 288
Query: 307 DSKLTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKIKAK 356
DS LT +L+ SL +A I+P ++ +TL++ T AK +
Sbjct: 289 DSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRFGTSAKAAALE 338
Score = 98.4 bits (246), Expect = 4e-23
Identities = 26/135 (19%), Positives = 47/135 (34%), Gaps = 34/135 (25%)
Query: 68 GEQSHMKVYIRVRPQSQKEEDGCHR--EIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRD 125
+ S +++ +R P Q + + ++I D +
Sbjct: 19 AKLSAVRIAVREAPYRQFLGRREPSVVQFPPWSDGKSLIVDQNE---------------- 62
Query: 126 INKKKSKEMEFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTM 185
F FD + + S ++Y ++ LLEG+ C+ YG TG GK+++M
Sbjct: 63 ----------FHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSM 112
Query: 186 LGN------ENHKGI 194
H GI
Sbjct: 113 GMTPPGEILPEHLGI 127
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha
and beta protein, enzyme, ATPase, P-loop, motor protein,
ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus}
SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A*
2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C*
1ia0_K* 2hxh_C*
Length = 366
Score = 183 bits (466), Expect = 3e-54
Identities = 52/128 (40%), Positives = 81/128 (63%), Gaps = 14/128 (10%)
Query: 244 DKATKQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLADGC--- 300
+ K+ K+S++DLAGSERA + + R KEG+NINKSL LG I++LA+
Sbjct: 233 ETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGP 292
Query: 301 ---------RHVPYRDSKLTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAK 351
+PYRDS LT +L+++LGGN +T M+A ++P ++Y+++ +TL+YA RAK
Sbjct: 293 NKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAK 352
Query: 352 KIK--AKV 357
+I+ V
Sbjct: 353 QIRNTVSV 360
Score = 109 bits (274), Expect = 8e-27
Identities = 38/139 (27%), Positives = 61/139 (43%), Gaps = 29/139 (20%)
Query: 71 SHMKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKK 130
+ +KV +RVRP + +E + I+++ T I +PKQ K
Sbjct: 4 ASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQ-------------------PK 44
Query: 131 SKEMEFLFDRVYGPSESN--------QDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKT 182
F FD Y S + VY ++++ EGYN +F YG TGAGK+
Sbjct: 45 ETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKS 104
Query: 183 HTMLG--NENHKGIMYLTM 199
+TM+G ++ +GI+
Sbjct: 105 YTMMGKQEKDQQGIIPQLC 123
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural
genomics, structur Al genomics consortium, SGC; HET:
ADP; 1.85A {Homo sapiens}
Length = 330
Score = 181 bits (462), Expect = 4e-54
Identities = 47/119 (39%), Positives = 76/119 (63%)
Query: 236 LMVYVKMQDKATKQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINS 295
L+V V+ D +T KL+++DLAGSER + + R +E +INKSL ALG+ I +
Sbjct: 211 LIVTVRGVDCSTGLRTTGKLNLVDLAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAA 270
Query: 296 LADGCRHVPYRDSKLTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKIK 354
L HVP+R+SKLT +L+DSL G+ KT+M+ ++P + ++ +LK+A R + ++
Sbjct: 271 LRSRQGHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVRSVE 329
Score = 112 bits (283), Expect = 2e-28
Identities = 36/126 (28%), Positives = 57/126 (45%), Gaps = 20/126 (15%)
Query: 74 KVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKSKE 133
+V RVRP ++++ +G + FD D K K
Sbjct: 7 RVIARVRPVTKEDGEGPEATNA-------VTFDADDDSII------------HLLHKGKP 47
Query: 134 MEFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGNENHKG 193
+ F D+V+ P S QDV+ + ++ S ++G+N +F YG TGAGKT+TM G + G
Sbjct: 48 VSFELDKVFSPQASQQDVFQ-EVQALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAENPG 106
Query: 194 IMYLTM 199
I +
Sbjct: 107 INQRAL 112
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics,
structural genomics consortium, SGC, contractIle
protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Length = 358
Score = 182 bits (463), Expect = 5e-54
Identities = 45/120 (37%), Positives = 71/120 (59%), Gaps = 3/120 (2%)
Query: 237 MVYVKMQDK--ATKQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCIN 294
+Y++ + + ++ K++++DLAGSER + S KE + INKSL L I
Sbjct: 239 TIYLEAHSRTLSEEKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAII 298
Query: 295 SLADG-CRHVPYRDSKLTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKI 353
+L D H+P+R KLT LKDSLGGNC V++ NI A E++ ++L++A+R K +
Sbjct: 299 ALGDQKRDHIPFRQCKLTHALKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFASRMKLV 358
Score = 108 bits (273), Expect = 1e-26
Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 19/135 (14%)
Query: 68 GEQSHMKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDIN 127
G + + ++RV+P + + D H K R +
Sbjct: 20 GTRKKVHAFVRVKPTDDFAHE---------------MIRYGDDKRSIDIHLKKDIRRGVV 64
Query: 128 KKKSKEMEFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLG 187
+ + F D V + S VY+ KD+++ L+GYN ++ YG TGAGKT+TM+G
Sbjct: 65 NNQQTDWSFKLDGVLHDA-SQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMG 123
Query: 188 ---NENHKGIMYLTM 199
N H+GI+ +
Sbjct: 124 ATENYKHRGILPRAL 138
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein,
microtubinding proteinbule, contractIle protein; HET:
ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9
PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Length = 347
Score = 180 bits (459), Expect = 2e-53
Identities = 42/127 (33%), Positives = 74/127 (58%), Gaps = 3/127 (2%)
Query: 236 LMVYVKMQDKATKQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINS 295
++++ + T L+++DLAGSER + R +E NINKSL LG+ I++
Sbjct: 221 FIIHLSGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHA 280
Query: 296 LADG---CRHVPYRDSKLTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKK 352
L RH+P+R+SKLT +L+ SL G+ KT+M NI+P++ ++ N+L++A++
Sbjct: 281 LGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNS 340
Query: 353 IKAKVSR 359
+ +
Sbjct: 341 TRLVSRK 347
Score = 104 bits (263), Expect = 2e-25
Identities = 37/126 (29%), Positives = 63/126 (50%), Gaps = 17/126 (13%)
Query: 74 KVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKSKE 133
+VY R+RP + E+ + ++I + DD+ GV+ + ++
Sbjct: 6 RVYCRIRPALKNLEN----------SDTSLINVNEFDDNS----GVQSMEVTKIQNTAQV 51
Query: 134 MEFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGNENHKG 193
EF FD+++ ++N DV+ ++ S L+GYN +F YG TG+GKT TML G
Sbjct: 52 HEFKFDKIFDQQDTNVDVFK-EVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPG--DG 108
Query: 194 IMYLTM 199
I+ T+
Sbjct: 109 IIPSTI 114
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor
domain, ADP, SGC, ATP-binding, coiled coil, microtubule,
motor protein; HET: ADP; 1.80A {Homo sapiens} PDB:
3b6v_A*
Length = 372
Score = 180 bits (459), Expect = 3e-53
Identities = 60/123 (48%), Positives = 83/123 (67%), Gaps = 2/123 (1%)
Query: 236 LMVYVKMQDKATKQ-MKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCIN 294
+ + + +++ KL+++DLAGSER A + R KE + IN SL ALGN I+
Sbjct: 234 ITIECSEVGLDGENHIRVGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVIS 293
Query: 295 SLADG-CRHVPYRDSKLTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKI 353
+L DG H+PYRDSKLTR+L+DSLGGN KTVM+AN+ P + + E++ TL+YA RAK I
Sbjct: 294 ALVDGKSTHIPYRDSKLTRLLQDSLGGNAKTVMVANVGPASYNVEETLTTLRYANRAKNI 353
Query: 354 KAK 356
K K
Sbjct: 354 KNK 356
Score = 104 bits (261), Expect = 6e-25
Identities = 35/133 (26%), Positives = 64/133 (48%), Gaps = 23/133 (17%)
Query: 68 GEQSHMKVYIRVRPQSQKEEDGCHREIVKI--LNRDTIIFDPKQDDSEFFFHGVKQSLRD 125
G ++V +R RP + KE+ + ++V + + +PK E
Sbjct: 18 GSSESVRVVVRCRPMNGKEKAASYDKVVDVDVKLGQVSVKNPKGTAHE------------ 65
Query: 126 INKKKSKEMEFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTM 185
K+ F FD VY + ++YD + + ++ S+L+G+N ++F YG TG GKT+TM
Sbjct: 66 --MPKT----FTFDAVYDWNAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTM 119
Query: 186 LG---NENHKGIM 195
G + +G++
Sbjct: 120 EGIRGDPEKRGVI 132
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP
complex, stranded beta-sheet core with solvent exposed
alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Length = 349
Score = 178 bits (454), Expect = 8e-53
Identities = 53/119 (44%), Positives = 74/119 (62%), Gaps = 6/119 (5%)
Query: 243 QDKATKQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLADGCR- 301
+K+ L+++DLAGSERAA + +R KEG NIN+SL LG I L+DG
Sbjct: 218 PSNCEGSVKVSHLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVG 277
Query: 302 -HVPYRDSKLTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKIK--AKV 357
+ YRDSKLTRIL++SLGGN KT +I I P S++++ L++A+ AK +K V
Sbjct: 278 GFINYRDSKLTRILQNSLGGNAKTRIICTITPV--SFDETLTALQFASTAKYMKNTPYV 334
Score = 114 bits (287), Expect = 1e-28
Identities = 38/132 (28%), Positives = 64/132 (48%), Gaps = 23/132 (17%)
Query: 68 GEQSHMKVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDIN 127
E+ + V +RVRP + +EE V + +I+ S
Sbjct: 1 AEEGAVAVCVRVRPLNSREESLGETAQVYWKTDNNVIYQVDGSKS--------------- 45
Query: 128 KKKSKEMEFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLG 187
F FDRV+ +E+ ++VY+ II S ++GYN ++F YG T +GKT+TM+G
Sbjct: 46 --------FNFDRVFHGNETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMG 97
Query: 188 NENHKGIMYLTM 199
+E+H G++ +
Sbjct: 98 SEDHLGVIPRAI 109
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain,
ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora
crassa}
Length = 443
Score = 180 bits (459), Expect = 2e-52
Identities = 56/129 (43%), Positives = 76/129 (58%), Gaps = 24/129 (18%)
Query: 251 KMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLADG----------- 299
+ ++ ++DLAGSERA + + R +EGSNINKSL LG I +LAD
Sbjct: 291 RSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLGRVIAALADPKSSASRPSSPV 350
Query: 300 -----------CRHVPYRDSKLTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYAT 348
VPYRDS LT +LKDSLGGN KT MIA I+PT Y+++ +TL+YA
Sbjct: 351 KSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACISPT--DYDETLSTLRYAD 408
Query: 349 RAKKIKAKV 357
+AK+I+ +
Sbjct: 409 QAKRIRTRA 417
Score = 122 bits (308), Expect = 5e-31
Identities = 41/196 (20%), Positives = 77/196 (39%), Gaps = 40/196 (20%)
Query: 13 SPRVSKVRPRSTSSSRTPGEQSHMKVYIRVRPQSQKEEDGCHSVMTTLELGIIHTGEQSH 72
S V + + RS S+ T + S +D +V
Sbjct: 4 SLDVHQRQTRSNVSTPTLRPRDDT-------ASSFVSKDPGANV---------------- 40
Query: 73 MKVYIRVRPQSQKEEDGCHREIVKILNRD--TIIFDPKQDDSEFFFHGVKQSLRDINKKK 130
+V +RVR +E + IV++ T + P++ D + +++
Sbjct: 41 -RVVVRVRAFLPRELERNAECIVEMDPATERTSLLVPQETDFA-------DARGARSRRV 92
Query: 131 SKEMEFLFDRVYGPSE-------SNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTH 183
+E F FD+ + + + VYD ++ + EGY+ +F YG TG+GK++
Sbjct: 93 LEEKSFTFDKSFWSHNTEDEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSY 152
Query: 184 TMLGNENHKGIMYLTM 199
TM+G + G++ T
Sbjct: 153 TMMGTPDQPGLIPRTC 168
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor
homology domain, karyog mitosis, microtubules; HET: ADP
EBC; 2.30A {Saccharomyces cerevisiae}
Length = 403
Score = 178 bits (455), Expect = 2e-52
Identities = 43/127 (33%), Positives = 75/127 (59%), Gaps = 3/127 (2%)
Query: 236 LMVYVKMQDKATKQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINS 295
++++ + T L+++DLAGSER + R +E NINKSL ALG+ I++
Sbjct: 277 FIIHLSGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHA 336
Query: 296 LADG---CRHVPYRDSKLTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKK 352
L RH+P+R+SKLT +L+ SL G+ KT+M NI+P++ ++ N+L++A++
Sbjct: 337 LGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNS 396
Query: 353 IKAKVSR 359
+ +
Sbjct: 397 TRLVSRK 403
Score = 105 bits (265), Expect = 2e-25
Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 17/126 (13%)
Query: 74 KVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKSKE 133
+VY+R+RP + E+ I + + + GV+ + ++
Sbjct: 62 RVYLRIRPALKNLENSDTSLIN--------VNEFDDNS------GVQSMEVTKIQNTAQV 107
Query: 134 MEFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGNENHKG 193
EF FD+++ ++N DV+ ++ S L+GYN ++F YG TG+GKT TML G
Sbjct: 108 HEFKFDKIFDQQDTNVDVFK-EVGQLVQSSLDGYNVAIFAYGQTGSGKTFTMLNPG--DG 164
Query: 194 IMYLTM 199
I+ T+
Sbjct: 165 IIPSTI 170
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor
domain, ADP, binding, cell cycle, cell division,
endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Length = 376
Score = 175 bits (446), Expect = 3e-51
Identities = 43/121 (35%), Positives = 69/121 (57%), Gaps = 4/121 (3%)
Query: 236 LMVYVKMQDKATKQMKMVKLSMIDLAGSERA----AANSSNQMRFKEGSNINKSLLALGN 291
+ + + + LS++DLAGSER A + R +E IN SL LG
Sbjct: 255 FQLQISGEHSSRGLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGL 314
Query: 292 CINSLADGCRHVPYRDSKLTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAK 351
I +L++ HVPYR+SKLT +L++SLGG+ K +M NI+P + +S N+L++A++
Sbjct: 315 VIMALSNKESHVPYRNSKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASKVN 374
Query: 352 K 352
+
Sbjct: 375 Q 375
Score = 108 bits (273), Expect = 1e-26
Identities = 30/130 (23%), Positives = 52/130 (40%), Gaps = 7/130 (5%)
Query: 74 KVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKSKE 133
+V+ RVRP E ++ P + ++
Sbjct: 25 RVFCRVRPVLPGEPTPPPGLLLFPSGPGGPSDPPTRLSLSR--SDERRGTLSGAPAPPPR 82
Query: 134 MEFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLG----NE 189
+F FDRV+ P +V++ ++ S L+GY +F YG TG+GKT TM G +
Sbjct: 83 HDFSFDRVFPPGSGQDEVFE-EIAMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDP 141
Query: 190 NHKGIMYLTM 199
+G++ +
Sbjct: 142 QLEGLIPRAL 151
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing
nucleosi triphosphate hydrolases, microtubule motor
protein; HET: ADP; 2.35A {Ashbya gossypii}
Length = 349
Score = 173 bits (442), Expect = 6e-51
Identities = 46/122 (37%), Positives = 75/122 (61%), Gaps = 3/122 (2%)
Query: 236 LMVYVKMQDKATKQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINS 295
MV++ ++ T + KL+++DLAGSER +++ R +E NINKSL LG+ I +
Sbjct: 224 FMVHINGRNLHTGETSQGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYA 283
Query: 296 LAD---GCRHVPYRDSKLTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKK 352
L G R++P+R+SKLT +L+ SL G+ KT+M NI P ++ N+L++A++
Sbjct: 284 LNTPDAGKRYIPFRNSKLTYLLQYSLVGDSKTLMFVNIPPDPNHISETLNSLRFASKVNS 343
Query: 353 IK 354
K
Sbjct: 344 TK 345
Score = 101 bits (254), Expect = 4e-24
Identities = 34/126 (26%), Positives = 61/126 (48%), Gaps = 18/126 (14%)
Query: 74 KVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKSKE 133
+VY RVRP E +++ N G + + N+ +
Sbjct: 8 RVYCRVRPPLLNEPQDMSHILIEKFNEAK---------------GAQSLTINRNEGRILS 52
Query: 134 MEFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGNENHKG 193
F FD ++ PS +N+++++ + ++ S L+GYN +F YG TG+GKT+TML G
Sbjct: 53 YNFQFDMIFEPSHTNKEIFE-EIRQLVQSSLDGYNVCIFAYGQTGSGKTYTMLNAG--DG 109
Query: 194 IMYLTM 199
++ +T+
Sbjct: 110 MIPMTL 115
>3u06_A Protein claret segregational; motor domain, stalk rotation, power
stroke, kinesin-14, MICR binding, NCD, transport,
molecular motor; HET: ADP GOL; 2.35A {Drosophila
melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Length = 412
Score = 175 bits (445), Expect = 8e-51
Identities = 43/131 (32%), Positives = 72/131 (54%), Gaps = 7/131 (5%)
Query: 236 LMVYVKMQDKATKQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINS 295
+ + + +++ + ++++DLAGSE ++ R E NIN+SL L N I +
Sbjct: 269 TKLELIGRHAEKQEISVGSINLVDLAGSESPKTST----RMTETKNINRSLSELTNVILA 324
Query: 296 LADGCRHVPYRDSKLTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKIK- 354
L H+PYR+SKLT +L SLGGN KT+M N++P +++S +L++A K
Sbjct: 325 LLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKM 384
Query: 355 --AKVSRTFKS 363
AK +R +
Sbjct: 385 TKAKRNRYLNN 395
Score = 106 bits (267), Expect = 1e-25
Identities = 36/126 (28%), Positives = 57/126 (45%), Gaps = 17/126 (13%)
Query: 74 KVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKSKE 133
+V+ R+RP + EE+ + QS+ K K +
Sbjct: 62 RVFCRIRPPLESEENRMCCTWTYHDESTVEL----------------QSIDAQAKSKMGQ 105
Query: 134 MEFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGNENHKG 193
F FD+V+ P S D+++ +I S L+GYN +F YG TG+GKT+TM G G
Sbjct: 106 QIFSFDQVFHPLSSQSDIFE-MVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVG 164
Query: 194 IMYLTM 199
++ T+
Sbjct: 165 VIPRTV 170
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus
norvegicus} SCOP: c.37.1.9
Length = 100
Score = 142 bits (361), Expect = 3e-42
Identities = 42/79 (53%), Positives = 57/79 (72%), Gaps = 1/79 (1%)
Query: 280 SNINKSLLALGNCINSLADG-CRHVPYRDSKLTRILKDSLGGNCKTVMIANIAPTALSYE 338
NINKSL ALGN I++LA+G HVPYRDSK+TRIL+DSL GNC+T ++ +P+ +
Sbjct: 2 KNINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEA 61
Query: 339 DSYNTLKYATRAKKIKAKV 357
++ +TL + RAK IK V
Sbjct: 62 ETKSTLMFGQRAKTIKNTV 80
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A
{Rattus norvegicus} SCOP: c.37.1.9
Length = 117
Score = 142 bits (361), Expect = 6e-42
Identities = 41/76 (53%), Positives = 57/76 (75%), Gaps = 1/76 (1%)
Query: 283 NKSLLALGNCINSLADGCR-HVPYRDSKLTRILKDSLGGNCKTVMIANIAPTALSYEDSY 341
NKSL ALGN I++LA+G + HVPYRDSK+TRIL+DSLGGNC+T ++ +P+ + ++
Sbjct: 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETK 60
Query: 342 NTLKYATRAKKIKAKV 357
+TL + RAK IK V
Sbjct: 61 STLMFGQRAKTIKNTV 76
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 66.4 bits (161), Expect = 8e-12
Identities = 54/364 (14%), Positives = 112/364 (30%), Gaps = 95/364 (26%)
Query: 31 GEQSHM-KVYIRVRPQSQKEEDGCHSVMTTLELGIIHTGEQSHMKVYIRVRPQSQKEEDG 89
GE + K + V + + C V + I+ E H I + G
Sbjct: 12 GEHQYQYKDILSVFEDAFVDNFDCKDVQDMPK-SILSKEEIDH----IIMSKD---AVSG 63
Query: 90 CHREIVKILNRDTII---F--DPKQDDSEFFFHGVKQSLRDINKKKSKEMEFLF----DR 140
R +L++ + F + + + +F + ++ ++ S ++ DR
Sbjct: 64 TLRLFWTLLSKQEEMVQKFVEEVLRINYKF----LMSPIKTEQRQPSMMTR-MYIEQRDR 118
Query: 141 VYGPSESNQDVYDGST------KDIIASLLE----GYNCSVFVYGATGAGKTHTMLGNE- 189
+Y NQ + + +LLE V + G G+GK T + +
Sbjct: 119 LYN---DNQVFAKYNVSRLQPYLKLRQALLELRPAKN---VLIDGVLGSGK--TWVALDV 170
Query: 190 --NHK-------GIMYLTMGIRNRVSALTRQMCTMRMYKTCLILRRKPSICEKMQLMVYV 240
++K I +L + N + + L+ + P+ +
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK-------LLYQIDPNWTSR------- 216
Query: 241 KMQDKATKQMKMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGN-----CINS 295
+ +KL + + R R + LL L N N+
Sbjct: 217 ------SDHSSNIKLRIHSIQAELR---------RLLKSKPYENCLLVLLNVQNAKAWNA 261
Query: 296 LADGCRH-VPYRDSKLTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKIK 354
C+ + R ++T D L T + + L+ ++ + L K +
Sbjct: 262 FNLSCKILLTTRFKQVT----DFLSAATTTHISLDHHSMTLTPDEVKSLL-----LKYLD 312
Query: 355 AKVS 358
+
Sbjct: 313 CRPQ 316
Score = 34.8 bits (79), Expect = 0.059
Identities = 16/78 (20%), Positives = 29/78 (37%), Gaps = 16/78 (20%)
Query: 72 HMKVYIRVRPQSQKEEDGCHREIVKILNRDTII-------FDPKQDDSEFFFHGVKQSLR 124
+Y+ ++ + + E HR I++ I P D F+ H + L+
Sbjct: 429 PS-IYLELKVKLENEYA-LHR---SIVDHYNIPKTFDSDDLIPPYLDQYFYSH-IGHHLK 482
Query: 125 DINKKKSKEMEFLFDRVY 142
+I E LF V+
Sbjct: 483 NIEH---PERMTLFRMVF 497
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.3 bits (99), Expect = 3e-04
Identities = 43/310 (13%), Positives = 81/310 (26%), Gaps = 114/310 (36%)
Query: 100 RDTIIFDPKQDDSEFFFHGVKQSLRDINKKKSKEMEFLFDRVYGPSESNQDVYDGSTKDI 159
+D +++ + D F S+ DI + F G + + + + I
Sbjct: 1643 QD--VWN-RAD--NHFKDTYGFSILDIVINNPVNLTIHFGGEKG-----KRIRENYSAMI 1692
Query: 160 IASLLEGYNCSVFVYGATGAGKTHTMLGNENHKGIMYLTMGIRNRVSALTRQ--MCTMRM 217
++++G + ++ T +E KG++ T T Q + M
Sbjct: 1693 FETIVDGKLKTEKIFKEINEHSTSYTFRSE--KGLLSAT--------QFT-QPALTLMEK 1741
Query: 218 YKTCLILRRKPSICEKMQLMVYVKMQDKATKQMKMVKLSMIDLAG-S--ERAAANSSNQM 274
++ K AG S E AA
Sbjct: 1742 ----AAFED---------------LKSKGLIPADAT------FAGHSLGEYAA------- 1769
Query: 275 RFKEGSNINKSLLALGNCINSLADGCRHVPYRDSKLTRILKDSLGGNCKTVMIA-NIAPT 333
L +L + + S+ V YR + + G MIA N
Sbjct: 1770 -----------LASLADVM-SIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRV 1817
Query: 334 ALSYEDS---------------------YNT--------------------LKYATRAKK 352
A S+ YN L + + +K
Sbjct: 1818 AASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFI-KLQK 1876
Query: 353 IK-AKVSRTF 361
I ++ ++
Sbjct: 1877 IDIIELQKSL 1886
>3bos_A Putative DNA replication factor; P-loop containing nucleoside
triphosphate hydrolases, struct genomics; HET: MSE CDP;
1.75A {Shewanella amazonensis} PDB: 3sc3_A
Length = 242
Score = 36.0 bits (84), Expect = 0.011
Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 6/43 (13%)
Query: 166 GYNCSVFVYGATGAGKTHTM--LGN---ENHKGIMYLTMGIRN 203
G ++++G +G+TH + E + Y+ +GI
Sbjct: 51 GVQA-IYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHA 92
>2kjq_A DNAA-related protein; solution structure, NESG, structural
genomics, PSI-2, protei structure initiative; NMR
{Neisseria meningitidis serogroup B}
Length = 149
Score = 32.6 bits (75), Expect = 0.096
Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Query: 154 GSTKDIIASLLEGYNCSVFVYGATGAGKTHTM--LGN---ENHKGIMYLT 198
+++ L + ++V+G GAGK+H + E K Y+
Sbjct: 22 TENAELVYVLRHKHGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYID 71
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+,
helix-turn-helix, nucleotide-binding, DNA binding, REP
initiation, DNA binding protein; HET: ADP; 2.70A
{Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A*
2hcb_A*
Length = 324
Score = 33.3 bits (77), Expect = 0.11
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 5/32 (15%)
Query: 172 FVYGATGAGKTHTM--LGN---ENHKGIMYLT 198
F+YG+ G GKTH + GN + ++Y +
Sbjct: 41 FIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS 72
>2qgz_A Helicase loader, putative primosome component; structural genomics,
PSI-2, protein structure initiative; 2.40A
{Streptococcus pyogenes serotype M3}
Length = 308
Score = 32.5 bits (74), Expect = 0.21
Identities = 9/68 (13%), Positives = 23/68 (33%), Gaps = 7/68 (10%)
Query: 138 FDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTM--LGNE----NH 191
+ + S + + + D + +++YG G GK++ + + +E
Sbjct: 123 LSDIDVNNASRMEAFS-AILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKG 181
Query: 192 KGIMYLTM 199
L
Sbjct: 182 VSTTLLHF 189
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase,
hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB:
2oaq_1
Length = 511
Score = 32.0 bits (73), Expect = 0.33
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 4/30 (13%)
Query: 160 IASLLEG---YNCSVFVYGATGAGKTHTML 186
+ + L + S V G T +GKT T L
Sbjct: 249 VLAYLWLAIEHKFSAIVVGETASGKT-TTL 277
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain
III (ATPase domain), ATP-binding, cytoplasm, DNA
replication; HET: ADP; 3.00A {Thermotoga maritima} PDB:
2z4r_A*
Length = 440
Score = 31.9 bits (73), Expect = 0.39
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 7/34 (20%)
Query: 172 FVYGATGAGKTHTM--LGN---ENHKG--IMYLT 198
F+YG G GKTH + +GN +N +MY+T
Sbjct: 134 FIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167
>3ec2_A DNA replication protein DNAC; helicase loader, replication
initiation factor, ATP-binding, nucleotide-binding; HET:
DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Length = 180
Score = 30.0 bits (68), Expect = 0.97
Identities = 8/54 (14%), Positives = 16/54 (29%), Gaps = 3/54 (5%)
Query: 138 FDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTM--LGNE 189
D + + S + + + + + G+ G GKTH
Sbjct: 9 LDTYHPKNVSQNRALL-TIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKA 61
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase;
1.90A {Tomato mosaic virus}
Length = 446
Score = 30.2 bits (67), Expect = 1.4
Identities = 16/77 (20%), Positives = 24/77 (31%), Gaps = 7/77 (9%)
Query: 171 VFVYGATGAGKTHTMLGNENHKGIMYLTMG------IRNRVSAL-TRQMCTMRMYKTCLI 223
V V G G GKT +L N + + L G IR R +A +
Sbjct: 164 VLVDGVPGCGKTKEILSRVNFEEDLILVPGRQAAEMIRRRANASGIIVATKDNVRTVDSF 223
Query: 224 LRRKPSICEKMQLMVYV 240
L +++
Sbjct: 224 LMNYGKGARCQFKRLFI 240
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 384
Score = 29.7 bits (66), Expect = 1.9
Identities = 8/29 (27%), Positives = 10/29 (34%), Gaps = 1/29 (3%)
Query: 158 DIIASLLEGYN-CSVFVYGATGAGKTHTM 185
I ++ S G TG GKT
Sbjct: 34 IAIRYFVKNEVKFSNLFLGLTGTGKTFVS 62
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane,
nucleotide-binding, RNA replication, transmembrane,
viral protein; 1.80A {Japanese encephalitis virus} PDB:
2v8o_A 2qeq_A
Length = 459
Score = 29.4 bits (66), Expect = 2.1
Identities = 6/31 (19%), Positives = 10/31 (32%), Gaps = 1/31 (3%)
Query: 153 DGSTKDIIASLLEGYNCSVFVYGATGAGKTH 183
++L +V G+GKT
Sbjct: 7 GQQMGRGSPNMLRKRQMTVLD-LHPGSGKTR 36
>2w58_A DNAI, primosome component (helicase loader); ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.50A
{Geobacillus kaustophilus HTA426}
Length = 202
Score = 28.9 bits (65), Expect = 2.1
Identities = 10/68 (14%), Positives = 26/68 (38%), Gaps = 7/68 (10%)
Query: 138 FDRVYGPSESNQDVYDGSTKDIIASLLEGYNC-SVFVYGATGAGKTHTM--LGNE---NH 191
V + + + +A G ++++G+ G GKT+ + + NE +
Sbjct: 24 LSDVDLNDDGRIKAIRFA-ERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRN 82
Query: 192 KGIMYLTM 199
+ + +
Sbjct: 83 VSSLIVYV 90
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR
complex, HMR, HML, TELO AAA+ domain, structural,
nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Length = 318
Score = 28.7 bits (63), Expect = 3.6
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 159 IIASLLEGYNCSVFVYGATGAGKTHTM 185
I SL+ N ++ A + K +
Sbjct: 36 IYDSLMSSQNKLFYITNADDSTKFQLV 62
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA
replication initation factor, cell cycle control factor;
HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11
c.37.1.20
Length = 389
Score = 28.6 bits (63), Expect = 3.7
Identities = 7/31 (22%), Positives = 12/31 (38%), Gaps = 3/31 (9%)
Query: 158 DIIASLLEGYNC---SVFVYGATGAGKTHTM 185
++ + L + G G GKT T+
Sbjct: 31 ILLGNWLRNPGHHYPRATLLGRPGTGKTVTL 61
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 386
Score = 28.5 bits (63), Expect = 4.1
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 162 SLLEGYNCSVFVYGATGAGKTHTM 185
E ++F+YG TG GKT +
Sbjct: 39 LYREEKPNNIFIYGLTGTGKTAVV 62
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A
{Brucella suis}
Length = 361
Score = 28.4 bits (64), Expect = 5.0
Identities = 8/18 (44%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
Query: 169 CSVFVYGATGAGKTHTML 186
+ V G TG+GKT T++
Sbjct: 176 RVIVVAGETGSGKT-TLM 192
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase,
hypertherm protein, replication; HET: DNA BOG; 1.50A
{Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB:
1d2m_A*
Length = 664
Score = 28.3 bits (64), Expect = 5.6
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Query: 160 IASLLEGYNC---SVFVYGATGAGKTHTM 185
IA L+E V + GATG GKT TM
Sbjct: 17 IAGLVEALRDGERFVTLLGATGTGKTVTM 45
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion,
hydrolas binding complex; 2.40A {Helicobacter pylori}
SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Length = 330
Score = 28.1 bits (63), Expect = 6.0
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 4/36 (11%)
Query: 154 GSTKDIIASLLEG---YNCSVFVYGATGAGKTHTML 186
K+ S ++ +V V G TG+GKT T +
Sbjct: 154 LDNKEQAISAIKDGIAIGKNVIVCGGTGSGKT-TYI 188
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex,
hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus
subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A*
1d9x_A 2d7d_B* 2nmv_B*
Length = 661
Score = 27.9 bits (63), Expect = 7.3
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Query: 160 IASLLEGYNC---SVFVYGATGAGKTHTM 185
I L++G + GATG GKT T+
Sbjct: 21 IEKLVKGIQEGKKHQTLLGATGTGKTFTV 49
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase,
tramp, exosome, DEAD, nucleotide-binding; HET: ADP;
2.90A {Saccharomyces cerevisiae}
Length = 1010
Score = 27.8 bits (61), Expect = 8.9
Identities = 10/26 (38%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Query: 157 KDIIASLLEGYNCSVFVYGATGAGKT 182
I+ + G SV V T AGKT
Sbjct: 92 DTAISCIDRG--ESVLVSAHTSAGKT 115
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold,
winged-helix-turn-helix, antiparallel-coiled-COI domain,
ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces
cerevisiae}
Length = 1108
Score = 27.9 bits (61), Expect = 9.2
Identities = 10/26 (38%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Query: 157 KDIIASLLEGYNCSVFVYGATGAGKT 182
I+ + G SV V T AGKT
Sbjct: 190 DTAISCIDRG--ESVLVSAHTSAGKT 213
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.132 0.381
Gapped
Lambda K H
0.267 0.0757 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,855,715
Number of extensions: 336697
Number of successful extensions: 950
Number of sequences better than 10.0: 1
Number of HSP's gapped: 876
Number of HSP's successfully gapped: 107
Length of query: 409
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 313
Effective length of database: 4,021,377
Effective search space: 1258691001
Effective search space used: 1258691001
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.1 bits)