RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4062
(409 letters)
>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a
[TaxId: 10090]}
Length = 349
Score = 168 bits (426), Expect = 3e-49
Identities = 94/366 (25%), Positives = 145/366 (39%), Gaps = 108/366 (29%)
Query: 74 KVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKSKE 133
KV +RVRP + +E + I+++ T I +PKQ K
Sbjct: 4 KVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQ-------------------PKETP 44
Query: 134 MEFLFDRVYGPSE--------SNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTM 185
F FD Y S + VY ++++ EGYN +F YG TGAGK++TM
Sbjct: 45 KSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTM 104
Query: 186 LGNENHK--GIMYLTMGI-----------------------------------RNRVSAL 208
+G + GI+ +N+ +
Sbjct: 105 MGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLR 164
Query: 209 TRQMCTMRMYKTCLILRRKPSICEKMQLMVYVKMQDKATKQMKMVKLSM----------- 257
R+ + Y L S + LM + + M + S
Sbjct: 165 VREHPLLGPYVEDLSKLAVTSYNDIQDLM-DSGNKPRTVAATNMNETSSRSHAVFNIIFT 223
Query: 258 --------------------IDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLA 297
+DLAGSERA + + R KEG+NINKSL LG I++LA
Sbjct: 224 QKRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALA 283
Query: 298 DGC------------RHVPYRDSKLTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLK 345
+ +PYRDS LT +L+++LGGN +T M+A ++P ++Y+++ +TL+
Sbjct: 284 EMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLR 343
Query: 346 YATRAK 351
YA RAK
Sbjct: 344 YADRAK 349
>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]}
Length = 323
Score = 164 bits (416), Expect = 5e-48
Identities = 78/316 (24%), Positives = 129/316 (40%), Gaps = 36/316 (11%)
Query: 74 KVYIRVRPQSQKEEDGCHREIVKILNRDTI-----------IFDPKQDDSEFFFHGVKQS 122
KV R RP ++ E + + I K DT+ +F + + K+
Sbjct: 8 KVMCRFRPLNESEVNRGDKYIAKFQGEDTVVIASKPYAFDRVFQSSTSQEQVYNDCAKKI 67
Query: 123 LRDINKK--------------KSKEMEFLFDRVYGPSESNQDVYDG----------STKD 158
++D+ + K+ ME G + V D
Sbjct: 68 VKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMDENLEFH 127
Query: 159 IIASLLEGYNCSVF-VYGATGAGKTHTMLGNENHKGIMYLTMGIRNRVSALTRQMCTMRM 217
I S E Y + + + + N + + +
Sbjct: 128 IKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERFVCSPDEVMDTIDEGKSN 187
Query: 218 YKTCLILRRKPSICEKMQLMVYVKMQDKATKQMKMVKLSMIDLAGSERAAANSSNQMRFK 277
+ + S ++ VK ++ T+Q KL ++DLAGSE+ + +
Sbjct: 188 RHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKVSKTGAEGAVLD 247
Query: 278 EGSNINKSLLALGNCINSLADGCRHVPYRDSKLTRILKDSLGGNCKTVMIANIAPTALSY 337
E NINKSL ALGN I++LA+G +VPYRDSK+TRIL+DSLGGNC+T ++ +P++ +
Sbjct: 248 EAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNE 307
Query: 338 EDSYNTLKYATRAKKI 353
++ +TL + RAK I
Sbjct: 308 SETKSTLLFGQRAKTI 323
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato
(Solanum tuberosum) [TaxId: 4113]}
Length = 364
Score = 155 bits (393), Expect = 2e-44
Identities = 85/348 (24%), Positives = 147/348 (42%), Gaps = 84/348 (24%)
Query: 74 KVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKSKE 133
+VY R+RP +KE R ++ ++ T+ K D K
Sbjct: 3 RVYCRLRPLCEKEIIAKERNAIRSVDEFTVEHLWKDD---------------------KA 41
Query: 134 MEFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYN---------CSVFVYGATGA----- 179
+ ++DRV+ + + DV++ TK ++ S ++GYN S + GA
Sbjct: 42 KQHMYDRVFDGNATQDDVFE-DTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNPG 100
Query: 180 --------------------------------------------GKTHTMLGNENHKGIM 195
K + ++ KG++
Sbjct: 101 LTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDSKGMV 160
Query: 196 YLTMGIRNRVSALTRQMCTMR----MYKTCLILRRKPSICEKMQLMVYVKMQDKATKQMK 251
+ +S ++ T L + S + + V ++ + T+ +
Sbjct: 161 SVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQTQAIA 220
Query: 252 MVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLADGCRHVPYRDSKLT 311
KLS +DLAGSER + S + KE +INKSL ALG+ I++L+ G +H+PYR+ KLT
Sbjct: 221 RGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGNQHIPYRNHKLT 280
Query: 312 RILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKIKAKVSR 359
++ DSLGGN KT+M NI+P + ++++N+L YA+R + I S+
Sbjct: 281 MLMSDSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRSIVNDPSK 328
>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium
falciparum) [TaxId: 5833]}
Length = 330
Score = 153 bits (387), Expect = 8e-44
Identities = 77/330 (23%), Positives = 130/330 (39%), Gaps = 55/330 (16%)
Query: 74 KVYIRVRPQSQKEEDGCHREIVKILNRDTII------------------------FDPKQ 109
KV +R RP S+ E+ +I+ + N T+ FD
Sbjct: 3 KVVVRKRPLSELEKKKKDSDIITVKNNCTLYIDEPRYKVDMTKYIERHEFIVDKVFDDTV 62
Query: 110 DDSEFFFHGVKQSLRDINK---------------KKSKEMEFLFDR------------VY 142
D+ + + +K + D+ + K+ M
Sbjct: 63 DNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYAAG 122
Query: 143 GPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGNENHKGIMYLTMGIR 202
+TK I S E Y ++ G + + +
Sbjct: 123 DIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQKRKMVAALENGKKEVVVKDLKILRVL 182
Query: 203 NRVSALTRQMCTMRMYKTCLILRRKPSICEKMQLMVYVKMQDKATKQMKMVKLSMIDLAG 262
+ + + + + + K + + S L + +K K + K++ IDLAG
Sbjct: 183 TKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLK---DINKNTSLGKIAFIDLAG 239
Query: 263 SERAAAN-SSNQMRFKEGSNINKSLLALGNCINSLADGCRHVPYRDSKLTRILKDSLGGN 321
SER A S N+ +G+NIN+SLLAL CI ++ H+P+RDS+LT++L+D G
Sbjct: 240 SERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDKNHIPFRDSELTKVLRDIFVGK 299
Query: 322 CKTVMIANIAPTALSYEDSYNTLKYATRAK 351
K++MIANI+PT E + NTL+Y++R K
Sbjct: 300 SKSIMIANISPTISCCEQTLNTLRYSSRVK 329
>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId:
10090]}
Length = 362
Score = 153 bits (386), Expect = 2e-43
Identities = 76/352 (21%), Positives = 131/352 (37%), Gaps = 27/352 (7%)
Query: 20 RPRSTSSSRTPGEQSHMKVYIRVRPQSQKE-EDGCHSVMTTLELGIIHTGEQSHMKVYIR 78
P + + P E+ + V +R RP +++E V++ ++ E +
Sbjct: 19 SPLTVTD---PIEEHRICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTK 75
Query: 79 VRPQ-------------SQKE--EDGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSL 123
S + + I H + L
Sbjct: 76 YLENQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDL 135
Query: 124 RDINKKKSKEMEFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTH 183
++ SK + + NQ Y ++ + E YN VF A
Sbjct: 136 SGKSQNASKGI-YAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNKKAKLRV 194
Query: 184 TMLGNENHKGIMYLTMGIRNRVSALTRQMCTMRMYKTCLILRRKPSICEKMQLMVYVKMQ 243
+ + + + + + S + ++ +
Sbjct: 195 LEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTK 254
Query: 244 DKATKQMKMVKLSMIDLAGSERAA-ANSSNQMRFKEGSNINKSLLALGNCINSLADGCRH 302
+ K S++DLAG+ER A +S+++ EG+ INKSLLAL CI +L H
Sbjct: 255 GR-----LHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAH 309
Query: 303 VPYRDSKLTRILKDS-LGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKI 353
P+R+SKLT++L+DS +G N +T MIA I+P S E + NTL+YA R K++
Sbjct: 310 TPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKEL 361
>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic
kinesin eg5 [TaxId: 9606]}
Length = 345
Score = 152 bits (383), Expect = 4e-43
Identities = 82/343 (23%), Positives = 133/343 (38%), Gaps = 60/343 (17%)
Query: 74 KVYIRVRPQSQKEEDGCHREIVKILNRDTII---------------------FDPKQDDS 112
+V +R RP + E IV+ + F
Sbjct: 3 QVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQI 62
Query: 113 EFFFHGVKQ--------------SLRDINKKKSKEMEFLFDRVYGPSES----------- 147
+ + V + K+ ME +
Sbjct: 63 DVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRT 122
Query: 148 -----NQDVYDGSTKDIIASLLEGYNCSVF--VYGATGAGKTHTMLGNENHKGIMYLT-- 198
+ +G+ + SLLE YN +F + ++ + M + +K + +
Sbjct: 123 LHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVIIKGL 182
Query: 199 --MGIRNRVSALTRQMCTMRMYKTCLILRRKPSICEKMQLMVYVKMQDKATKQMKMV--- 253
+ + N+ T L S V + M++ ++V
Sbjct: 183 EEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEELVKIG 242
Query: 254 KLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLADGCRHVPYRDSKLTRI 313
KL+++DLAGSE + + R +E NIN+SLL LG I +L + HVPYR+SKLTRI
Sbjct: 243 KLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESKLTRI 302
Query: 314 LKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKIKAK 356
L+DSLGG +T +IA I+P +L+ E++ +TL+YA RAK I K
Sbjct: 303 LQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNK 345
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 368
Score = 150 bits (378), Expect = 4e-42
Identities = 63/330 (19%), Positives = 114/330 (34%), Gaps = 26/330 (7%)
Query: 37 KVYIRVRPQSQKEED-GCHSVMTTLELGIIHTGEQSHMKVYIRVR---------PQSQKE 86
+V+ R+RP + EE+ C + E + + K + + P S +
Sbjct: 48 RVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQS 107
Query: 87 E--DGCHREIVKILNRDTIIFDPKQDDSEFFFHGVKQSLRDINKKKSKEMEFLFDRVYGP 144
+ + I L+ I + + +
Sbjct: 108 DIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSI---- 163
Query: 145 SESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGNENHKGIMYLTMGIRNR 204
G +I A+ LE YN ++ + + N I +
Sbjct: 164 ---RGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETV 220
Query: 205 VSALTRQMCTMRMYKTCLILRRKP---SICEKMQLMVYVKMQDKATKQMKMVKLSMIDLA 261
+ + S + + + +++ + ++++DLA
Sbjct: 221 LDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEISVGSINLVDLA 280
Query: 262 GSERAAANSSNQMRFKEGSNINKSLLALGNCINSLADGCRHVPYRDSKLTRILKDSLGGN 321
GSE R E NIN+SL L N I +L H+PYR+SKLT +L SLGGN
Sbjct: 281 GSESPK----TSTRMTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGN 336
Query: 322 CKTVMIANIAPTALSYEDSYNTLKYATRAK 351
KT+M N++P +++S +L++A
Sbjct: 337 SKTLMFINVSPFQDCFQESVKSLRFAASVN 366
>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId:
4932]}
Length = 342
Score = 146 bits (369), Expect = 3e-41
Identities = 69/347 (19%), Positives = 134/347 (38%), Gaps = 39/347 (11%)
Query: 37 KVYIRVRPQSQKEEDGCHSVMT-----------TLELGIIHTGEQSHMKVYIRVRPQSQK 85
+VY R+RP + E+ S++ ++E+ I Q H + ++ Q
Sbjct: 4 RVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDT 63
Query: 86 EED------GCHREIVKILNRDTIIFDPKQDDSEFFFHG---------VKQSLRDINKKK 130
D + + N + F + INK K
Sbjct: 64 NVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGDGIIPSTISHIFNWINKLK 123
Query: 131 SKEMEFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGNEN 190
+K ++ + + ++Y+ + D LL N + + +
Sbjct: 124 TKGWDYKVNCEF------IEIYNENIVD----LLRSDNNNKEDTSIGLKHEIRHDQETKT 173
Query: 191 HKGIMYLTMGIRNRVSALTRQMCTMRMYKTCLILRRKPSICEKMQLMVYVKMQDKATKQM 250
+ + + ++ T + S ++++ + T
Sbjct: 174 TTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGSNAKTGAH 233
Query: 251 KMVKLSMIDLAGSERAAANSSNQMRFKEGSNINKSLLALGNCINSLAD---GCRHVPYRD 307
L+++DLAGSER + R +E NINKSL LG+ I++L RH+P+R+
Sbjct: 234 SYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRN 293
Query: 308 SKLTRILKDSLGGNCKTVMIANIAPTALSYEDSYNTLKYATRAKKIK 354
SKLT +L+ SL G+ KT+M NI+P++ ++ N+L++A++ +
Sbjct: 294 SKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTR 340
>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]}
Length = 354
Score = 147 bits (370), Expect = 4e-41
Identities = 79/330 (23%), Positives = 125/330 (37%), Gaps = 46/330 (13%)
Query: 74 KVYIRVRPQSQKEEDGCHREIVKILNRDTIIFDPKQDDSEFFFHGV-------------- 119
KV R RPQ++ E + + IV DT D K+ F F V
Sbjct: 8 KVVARFRPQNRVEIESGGQPIVTFQGPDTCTVDSKEAQGSFTFDRVFDMSCKQSDIFDFS 67
Query: 120 --------------------------KQSLRDINKKKSKEMEFLFDRVYGPSESNQDVYD 153
++ + + V S
Sbjct: 68 IKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTSILSSAA 127
Query: 154 GSTKDIIASLLEGYNCSV---FVYGATGAGKTHTMLGNENHKGIMYLTMGIRNRVSALTR 210
+ S +E Y + KG++ + + V + R
Sbjct: 128 NIEYTVRVSYMEIYMERIRDLLAPQNDNLPVHEEKNRGVYVKGLLEIYVSSVQEVYEVMR 187
Query: 211 QMCTMRMYKTCLILRRKPSICEKMQLMVYVKMQDKATKQMKMVKLSMIDLAGSERAAANS 270
+ R + + ++ + ++ T K +L ++DLAGSE+
Sbjct: 188 RGGNARAVAATNMNQESSRSH--SIFVITITQKNVETGSAKSGQLFLVDLAGSEKVGKTG 245
Query: 271 SNQMRFKEGSNINKSLLALGNCINSLADG-CRHVPYRDSKLTRILKDSLGGNCKTVMIAN 329
++ +E INKSL ALG IN+L DG HVPYRDSKLTRIL++SLGGN +T +I N
Sbjct: 246 ASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQESLGGNSRTTLIIN 305
Query: 330 IAPTALSYEDSYNTLKYATRAKKIKAKVSR 359
+P++ + ++ +TL++ RAK IK K
Sbjct: 306 CSPSSYNDAETLSTLRFGMRAKSIKNKAKV 335
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 30.1 bits (66), Expect = 0.41
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 4/46 (8%)
Query: 137 LFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKT 182
LFD P ++ +D +D + I L V G GK+
Sbjct: 2 LFD--TSPKDNRKDFFD--REKEIEKLKGLRAPITLVLGLRRTGKS 43
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1
(Tip120) {Human (Homo sapiens) [TaxId: 9606]}
Length = 1207
Score = 28.6 bits (62), Expect = 1.7
Identities = 9/60 (15%), Positives = 21/60 (35%), Gaps = 4/60 (6%)
Query: 223 ILRRKPSICEKMQLMVYVKMQDKATKQ----MKMVKLSMIDLAGSERAAANSSNQMRFKE 278
+L+R + E ++ K++ + KQ +K S + + + E
Sbjct: 1135 VLQRLDRLVEPLRATCTTKVKANSVKQEFEKQDELKRSAMRAVAALLTIPEAEKSPLMSE 1194
>d2akoa1 c.73.1.3 (A:2-251) Glutamate 5-kinase {Campylobacter jejuni
[TaxId: 197]}
Length = 250
Score = 27.3 bits (59), Expect = 2.8
Identities = 14/102 (13%), Positives = 29/102 (28%)
Query: 158 DIIASLLEGYNCSVFVYGATGAGKTHTMLGNENHKGIMYLTMGIRNRVSALTRQMCTMRM 217
+A L+E Y + A AG T + +N L + + ++ ++
Sbjct: 28 AFLAKLMEKYEVILVTSAAISAGHTKLDIDRKNLINKQVLAAIGQPFLISVYNELLAKFN 87
Query: 218 YKTCLILRRKPSICEKMQLMVYVKMQDKATKQMKMVKLSMID 259
IL + D + ++ D
Sbjct: 88 KLGGQILLTGKDFDSRKATKHAKNAIDMMINLGILPIINEND 129
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 27.1 bits (59), Expect = 3.2
Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 3/67 (4%)
Query: 219 KTCLILRRKPSICEKMQLMVYVKMQDKATKQM---KMVKLSMIDLAGSERAAANSSNQMR 275
KTCL++R K + V + + VKL M D AG ER + + R
Sbjct: 19 KTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYR 78
Query: 276 FKEGSNI 282
+
Sbjct: 79 DAHALLL 85
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 26.8 bits (58), Expect = 3.5
Identities = 15/59 (25%), Positives = 22/59 (37%), Gaps = 2/59 (3%)
Query: 219 KTCLILR-RKPSICEKMQLMVYVKMQDKATK-QMKMVKLSMIDLAGSERAAANSSNQMR 275
KT + R S V + + K K +KL + D AG ER ++ R
Sbjct: 18 KTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYR 76
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 26.7 bits (58), Expect = 4.3
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 219 KTCLILR-RKPSICEKMQLMVYVKMQDKATK-QMKMVKLSMIDLAGSER 265
K+CL++R + + + + K K VKL + D AG ER
Sbjct: 15 KSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 63
>d1k32a4 c.14.1.2 (A:680-762,A:854-1061) Tricorn protease {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 291
Score = 26.6 bits (58), Expect = 5.0
Identities = 16/141 (11%), Positives = 32/141 (22%), Gaps = 13/141 (9%)
Query: 76 YIRVRPQSQKEEDGCHREIVKILNRDTIIFD----PKQDDSE----FFFHGVKQSLRDIN 127
YI + + +R + + +I D S+ +
Sbjct: 111 YIHIPDMGMMGLNEFYRLFINESSYQGLIVDVRFNGGGFVSQLIIEKLMNKRIGYDNPRR 170
Query: 128 KKKSKEMEFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTH--TM 185
S G + + Y GS DI + + + T G
Sbjct: 171 GTLSPYPTNSVR---GKIIAITNEYAGSDGDIFSFSFKKLGLGKLIGTRTWGGVVGITPK 227
Query: 186 LGNENHKGIMYLTMGIRNRVS 206
+ + R +
Sbjct: 228 RRLIDGTVLTQPEFAFWFRDA 248
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 26.4 bits (57), Expect = 5.7
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 219 KTCLILR-RKPSICEKMQLMVYVKMQDKATK-QMKMVKLSMIDLAGSERAAANSSNQMR 275
K+CL+LR + + V + K + K VKL + D AG ER +S+ R
Sbjct: 19 KSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYR 77
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 136
Score = 26.0 bits (56), Expect = 5.7
Identities = 9/99 (9%), Positives = 25/99 (25%), Gaps = 4/99 (4%)
Query: 162 SLLEGYNCSVFVYGATGAGKTHTMLGNENHKGIMYLTMGIRNRVSALTRQMCTMRMYKTC 221
++ + + + ++ TG+GK+ + +G L + A T
Sbjct: 3 AVPQSFQVAH-LHAPTGSGKSTKVPAAYAAQGYKVLVLNPSV---AATLGFGAYMSKAHG 58
Query: 222 LILRRKPSICEKMQLMVYVKMQDKATKQMKMVKLSMIDL 260
+ + + D+
Sbjct: 59 VDPNIRTGVRTITTGSPITYSTYGKFLADGGCSGGAYDI 97
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 25.8 bits (55), Expect = 7.0
Identities = 13/94 (13%), Positives = 29/94 (30%), Gaps = 5/94 (5%)
Query: 170 SVFVYGATGAGKTHTML-----GNENHKGIMYLTMGIRNRVSALTRQMCTMRMYKTCLIL 224
+ + GAGKT L + + R +S + + +
Sbjct: 9 TTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHGLDVKFHTQAF 68
Query: 225 RRKPSICEKMQLMVYVKMQDKATKQMKMVKLSMI 258
S E + M + + + + ++V +I
Sbjct: 69 SAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVI 102
>d1n1ta1 b.29.1.15 (A:413-634) Trypanosoma sialidase, C-terminal
domain {Trypanosoma rangeli [TaxId: 5698]}
Length = 222
Score = 25.8 bits (57), Expect = 8.7
Identities = 11/69 (15%), Positives = 25/69 (36%), Gaps = 3/69 (4%)
Query: 132 KEMEFLFDRVYGPSESNQDVYDGSTKDIIASLLEGYNCSVFVYGATGAGKTHTMLGNENH 191
++ L+ + ++ K + + SV+V G AG +T++
Sbjct: 114 RQWRPLYGAAPASPTGS---WELHKKYHVVLTMADRQGSVYVDGQPLAGSGNTVVRGATL 170
Query: 192 KGIMYLTMG 200
I + +G
Sbjct: 171 PDISHFYIG 179
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 25.9 bits (55), Expect = 9.3
Identities = 12/154 (7%), Positives = 34/154 (22%), Gaps = 3/154 (1%)
Query: 157 KDIIASLLEGYNC---SVFVYGATGAGKTHTMLGNENHKGIMYLTMGIRNRVSALTRQMC 213
++ + L + G G GKT T+ +
Sbjct: 29 DILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTA 88
Query: 214 TMRMYKTCLILRRKPSICEKMQLMVYVKMQDKATKQMKMVKLSMIDLAGSERAAANSSNQ 273
+ L + + + + + + + L + +
Sbjct: 89 IIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLG 148
Query: 274 MRFKEGSNINKSLLALGNCINSLADGCRHVPYRD 307
+ +L+ +G+ L +
Sbjct: 149 QEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIM 182
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.132 0.381
Gapped
Lambda K H
0.267 0.0467 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,427,959
Number of extensions: 63692
Number of successful extensions: 238
Number of sequences better than 10.0: 1
Number of HSP's gapped: 209
Number of HSP's successfully gapped: 37
Length of query: 409
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 322
Effective length of database: 1,213,086
Effective search space: 390613692
Effective search space used: 390613692
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.2 bits)