Query psy4063
Match_columns 205
No_of_seqs 113 out of 763
Neff 3.6
Searched_HMMs 29240
Date Sat Aug 17 00:23:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4063.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4063hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v2d_O 50S ribosomal protein L 100.0 1.9E-44 6.6E-49 286.9 6.9 106 34-157 1-121 (122)
2 1whi_A Ribosomal protein L14; 100.0 4.8E-44 1.6E-48 284.5 6.6 106 34-157 1-121 (122)
3 3r8s_K 50S ribosomal protein L 100.0 9.5E-44 3.3E-48 282.9 5.4 105 34-156 1-121 (122)
4 3bbo_M Ribosomal protein L14; 100.0 1.5E-43 5.3E-48 281.4 5.0 105 34-157 1-120 (121)
5 1vq8_K 50S ribosomal protein L 100.0 1.5E-42 5.2E-47 279.2 6.7 109 30-157 7-131 (132)
6 3j21_J 50S ribosomal protein L 100.0 1.5E-42 5.2E-47 281.8 6.3 112 27-157 13-140 (141)
7 3u5e_V L17A, YL32, 60S ribosom 100.0 1.3E-41 4.4E-46 275.3 7.0 109 30-157 12-136 (137)
8 3r87_A Putative uncharacterize 50.5 46 0.0016 23.6 6.2 62 69-136 67-132 (135)
9 2qqr_A JMJC domain-containing 48.9 22 0.00075 27.7 4.5 41 70-111 4-45 (118)
10 2gf6_A Conserved hypothetical 48.8 28 0.00095 24.3 4.7 59 68-136 67-132 (135)
11 2o5u_A Thioesterase; putative 45.9 56 0.0019 23.5 6.1 61 69-135 74-139 (148)
12 1mhn_A SurviVal motor neuron p 37.5 42 0.0014 22.1 3.9 36 72-107 4-41 (59)
13 2eqj_A Metal-response element- 36.4 45 0.0016 23.8 4.1 43 71-113 13-56 (66)
14 2pzh_A Hypothetical protein HP 34.1 1.2E+02 0.004 21.1 6.6 62 68-135 58-131 (135)
15 2cye_A TTHA1846, putative thio 32.1 86 0.003 21.7 5.1 61 68-135 62-124 (133)
16 2egj_A Hypothetical protein AQ 31.4 1.2E+02 0.0041 20.6 5.7 56 69-135 64-125 (128)
17 1s5u_A Protein YBGC; structura 31.2 1.1E+02 0.0039 21.1 5.6 61 69-135 69-133 (138)
18 4hcz_A PHD finger protein 1; p 30.8 63 0.0022 22.5 4.0 41 73-113 5-46 (58)
19 4a4f_A SurviVal of motor neuro 30.4 60 0.002 21.8 3.8 36 72-107 9-46 (64)
20 1njk_A Hypothetical protein YB 29.4 59 0.002 23.8 4.0 62 68-135 82-148 (156)
21 3ck1_A Putative thioesterase; 28.2 87 0.003 22.2 4.7 64 69-137 69-135 (150)
22 4i4j_A ACP-polyene thioesteras 28.2 1.1E+02 0.0038 22.5 5.4 66 68-136 72-144 (159)
23 2ali_A Hypothetical protein PA 27.7 1.1E+02 0.0038 22.6 5.3 62 68-135 87-154 (158)
24 1g5v_A SurviVal motor neuron p 27.0 68 0.0023 23.3 3.9 36 72-107 11-48 (88)
25 3r8s_P 50S ribosomal protein L 26.5 72 0.0025 24.7 4.1 26 72-97 19-52 (114)
26 1whm_A Cylindromatosis tumor s 26.0 1E+02 0.0035 23.1 4.7 52 72-126 10-67 (92)
27 3s6w_A Tudor domain-containing 25.8 1E+02 0.0035 19.6 4.2 35 73-107 3-39 (54)
28 2oiw_A Putative 4-hydroxybenzo 25.3 1.2E+02 0.004 21.1 4.8 63 68-136 62-127 (136)
29 2fuj_A Conserved hypothetical 25.1 1.7E+02 0.006 20.2 6.2 62 68-135 68-135 (137)
30 2ftc_K 39S ribosomal protein L 24.8 96 0.0033 23.4 4.4 25 73-97 5-36 (98)
31 3v2d_T 50S ribosomal protein L 24.8 78 0.0027 25.7 4.1 26 72-97 22-55 (146)
32 2hx5_A Hypothetical protein; t 23.5 1.6E+02 0.0055 21.1 5.4 58 69-136 77-141 (152)
33 2xdp_A Lysine-specific demethy 23.5 17 0.00058 28.5 0.0 40 71-111 6-46 (123)
34 1z54_A Probable thioesterase; 22.3 1.7E+02 0.0059 20.0 5.2 15 69-83 64-78 (132)
35 3hm0_A Probable thioesterase; 21.9 1.1E+02 0.0039 23.1 4.5 62 68-135 101-164 (167)
36 2hlj_A Hypothetical protein; p 21.6 1.9E+02 0.0064 20.6 5.4 61 69-135 67-132 (157)
37 1lo7_A 4-hydroxybenzoyl-COA th 21.3 1.8E+02 0.0061 20.1 5.1 64 69-135 69-139 (141)
38 2nuj_A Thioesterase superfamil 21.1 2.5E+02 0.0085 20.5 7.0 63 68-136 85-153 (163)
39 2oaf_A Thioesterase superfamil 21.0 1.2E+02 0.0041 21.8 4.3 59 68-135 80-144 (151)
No 1
>3v2d_O 50S ribosomal protein L14; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2j03_O 2jl6_O 2jl8_O 2v47_O 2v49_O 2wdi_O 2wdj_O 2wdl_O 2wdn_O 2wh2_O 2wh4_O 2wrj_O 2wrl_O 2wro_O 2wrr_O 2x9s_O 2x9u_O 2xg0_O 2xg2_O 2xqe_O ...
Probab=100.00 E-value=1.9e-44 Score=286.86 Aligned_cols=106 Identities=25% Similarity=0.412 Sum_probs=101.1
Q ss_pred cccccCeEEEEeCChhcccccccCCCcEEEEEcc--CCcccccCCEEEEEEc----------CeeeeEEEEeEEec---c
Q psy4063 34 HIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYN--QTHIGTIGDKVLVAIK----------GEKKKGIIVGVKKH---Q 98 (205)
Q Consensus 34 MIqk~T~L~VaDNSGagk~~~~~~K~v~CI~V~~--k~r~A~IGD~IvVSVK----------GeV~kAVIVRtKk~---~ 98 (205)
|||.+|+|+|+||||| |.++||+||+ ++++|++||+|+++|| ||+++|||||||++ .
T Consensus 1 MIq~~t~L~vaDNSGA--------k~v~cI~Vlg~~~rr~a~iGD~IvvsVK~~~p~~~vKkg~v~~AVIVRtkk~~rR~ 72 (122)
T 3v2d_O 1 MIQPQTYLEVADNTGA--------RKIMCIRVLKGSNAKYATVGDVIVASVKEAIPRGAVKEGDVVKAVVVRTKKEIKRP 72 (122)
T ss_dssp CBCTTCEEEECBSSSE--------EEEEEEEEESTTTCCCBCTTCEEEEEEEEECSSSSSCTTCEEEEEEEECSSCEECT
T ss_pred CCCCCCEEEEeeCCCC--------cEEEEEEEeCCCCCcccCCCCEEEEEEEEcCCCCccccCCEEEEEEEEeCCccCCC
Confidence 9999999999999998 7789999998 5779999999999998 89999999999998 4
Q ss_pred CCCeeeeCCceEEEECCCCCccceEEecchhHHHHhhhhhhcccCCCCchhhhhhhHHH
Q psy4063 99 KPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGADYTNTLNSINNI 157 (205)
Q Consensus 99 dG~~ikFddNavVLLn~kg~PlGTRI~GPVp~ELR~k~~~~~~~~~~~~~KIlSlA~~i 157 (205)
||++++|||||+||+|++++|+|||||||||+|||++ +|+||+|||+++
T Consensus 73 dG~~i~FddNa~Vlin~~~~p~GTrI~GpVarElr~~----------~~~KI~SlA~~v 121 (122)
T 3v2d_O 73 DGSAIRFDDNAAVIINNQLEPRGTRVFGPVARELREK----------GFMKIVSLAPEV 121 (122)
T ss_dssp TSCEEEESSCEEEEECTTSCBSSSCBCSCBCTHHHHT----------TCHHHHHHSSCB
T ss_pred CCcEEEcCCcEEEEECCCCCEeeeEEEccchHHHhhC----------CCchhhcccccc
Confidence 8999999999999999999999999999999999999 999999999864
No 2
>1whi_A Ribosomal protein L14; rRNA-binding; 1.50A {Geobacillus stearothermophilus} SCOP: b.39.1.1 PDB: 1giy_N 1ml5_n* 1c04_D 1yl3_N 2b66_O 2b9n_O 2b9p_O 487d_M
Probab=100.00 E-value=4.8e-44 Score=284.49 Aligned_cols=106 Identities=29% Similarity=0.463 Sum_probs=101.1
Q ss_pred cccccCeEEEEeCChhcccccccCCCcEEEEEcc--CCcccccCCEEEEEEc----------CeeeeEEEEeEEec---c
Q psy4063 34 HIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYN--QTHIGTIGDKVLVAIK----------GEKKKGIIVGVKKH---Q 98 (205)
Q Consensus 34 MIqk~T~L~VaDNSGagk~~~~~~K~v~CI~V~~--k~r~A~IGD~IvVSVK----------GeV~kAVIVRtKk~---~ 98 (205)
|||.+|+|+|+||||| |.++||+|++ ++++|++||+|+|+|| |++++|||||||++ .
T Consensus 1 MIq~~t~l~vaDNSGA--------k~v~cI~vlgg~~~r~a~iGD~IvvsVK~~~p~~~vkkg~v~~AVIVRtkk~~rR~ 72 (122)
T 1whi_A 1 MIQQESRLKVADNSGA--------REVLVIKVLGGSGRRYANIGDVVVATVKDATPGGVVKKGQVVKAVVVRTKRGVRRP 72 (122)
T ss_dssp CBCTTCEEEECBSSSE--------EEEEEEEECSSTTCCCBCTTCEEEEEEEEECTTSSSCTTCEEEEEEEECSSCEECT
T ss_pred CCCccCEEEEeECCCC--------cEEEEEEEcCCCcccccccCeEEEEEEEEecCCCccccccEEEEEEEEecCceecC
Confidence 9999999999999998 7789999998 4789999999999998 89999999999998 4
Q ss_pred CCCeeeeCCceEEEECCCCCccceEEecchhHHHHhhhhhhcccCCCCchhhhhhhHHH
Q psy4063 99 KPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGADYTNTLNSINNI 157 (205)
Q Consensus 99 dG~~ikFddNavVLLn~kg~PlGTRI~GPVp~ELR~k~~~~~~~~~~~~~KIlSlA~~i 157 (205)
||++++|||||+||+|++|+|+|||||||||+|||++ +|+||+|||+++
T Consensus 73 dG~~i~FddNa~Vlin~~g~p~GTrI~GPVarElr~k----------~~~KI~SlA~~v 121 (122)
T 1whi_A 73 DGSYIRFDENACVIIRDDKSPRGTRIFGPVARELRDK----------DFMKIISLAPEV 121 (122)
T ss_dssp TSCEECCSSCEEEEECTTSCBSSSCBCSCBCTHHHHT----------TCHHHHHHCSCB
T ss_pred CCCEEEeCCceEEEECCCCCEeeeEEEccchHHHhhc----------CCcchhhccccc
Confidence 8999999999999999999999999999999999998 899999999865
No 3
>3r8s_K 50S ribosomal protein L14; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_K 3oat_K* 3oas_K* 3ofd_K 3ofc_K 3ofr_K* 3ofz_K* 3og0_K 3ofq_K 3r8t_K 3i1n_K 1p85_I 1p86_I 1vs8_K 1vs6_K 2aw4_K 2awb_K 1vt2_K 2i2v_K 2i2t_K* ...
Probab=100.00 E-value=9.5e-44 Score=282.88 Aligned_cols=105 Identities=27% Similarity=0.434 Sum_probs=100.2
Q ss_pred cccccCeEEEEeCChhcccccccCCCcEEEEEcc--CCcccccCCEEEEEEc----------CeeeeEEEEeEEec---c
Q psy4063 34 HIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYN--QTHIGTIGDKVLVAIK----------GEKKKGIIVGVKKH---Q 98 (205)
Q Consensus 34 MIqk~T~L~VaDNSGagk~~~~~~K~v~CI~V~~--k~r~A~IGD~IvVSVK----------GeV~kAVIVRtKk~---~ 98 (205)
|||.+|+|+|+||||| |.++||+||+ ++++|++||+|+++|| |++++|||||||++ .
T Consensus 1 MIq~~t~L~vaDNSGA--------k~v~cI~Vlgg~~r~~a~iGD~IvvsVK~~~p~~~vkkg~v~~AVIVRtkk~~rR~ 72 (122)
T 3r8s_K 1 MIQEQTMLNVADNSGA--------RRVMCIKVLGGSHRRYAGVGDIIKITIKEAIPRGKVKKGDVLKAVVVRTKKGVRRP 72 (122)
T ss_dssp CBCTTCEEEECBTTSE--------EEEEEEEECSSSSCCCBCTTCEEEEEEEEECTTSSSCTTCEEEEEEEECSSCEECT
T ss_pred CCCCCCEEEEccCCCC--------ceEEEEEEeCCCCCCcccCCCEEEEEEEEcCCCCccccCCEEEEEEEEeCCcCCCC
Confidence 9999999999999998 7789999998 5779999999999998 89999999999998 4
Q ss_pred CCCeeeeCCceEEEECCC-CCccceEEecchhHHHHhhhhhhcccCCCCchhhhhhhHH
Q psy4063 99 KPHIPKTDTNNVVLIDDS-GTPLGTRIHVPIPSMLRTILKEKTLSKGADYTNTLNSINN 156 (205)
Q Consensus 99 dG~~ikFddNavVLLn~k-g~PlGTRI~GPVp~ELR~k~~~~~~~~~~~~~KIlSlA~~ 156 (205)
||++++|||||+||||++ |+|+|||||||||+|||++ +|+||+|||++
T Consensus 73 dG~~i~FddNa~Vlin~~~g~p~GTrI~GpVarElR~~----------~~~KI~SlA~~ 121 (122)
T 3r8s_K 73 DGSVIRFDGNACVLLNNNSEQPIGTRIFGPVTRELRSE----------KFMKIISLAPE 121 (122)
T ss_dssp TSCEEEESSCEEEEEETTTEEESCSCBCSCCCGGGGSG----------GGHHHHHSSSC
T ss_pred CCcEEEcCCceEEEEeCCCCCEeeeEEEccccHHHhHc----------CCchhhccccC
Confidence 899999999999999999 9999999999999999998 89999999975
No 4
>3bbo_M Ribosomal protein L14; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=1.5e-43 Score=281.35 Aligned_cols=105 Identities=30% Similarity=0.423 Sum_probs=100.0
Q ss_pred cccccCeEEEEeCChhcccccccCCCcEEEEEcc--CCcccccCCEEEEEEc----------CeeeeEEEEeEEec---c
Q psy4063 34 HIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYN--QTHIGTIGDKVLVAIK----------GEKKKGIIVGVKKH---Q 98 (205)
Q Consensus 34 MIqk~T~L~VaDNSGagk~~~~~~K~v~CI~V~~--k~r~A~IGD~IvVSVK----------GeV~kAVIVRtKk~---~ 98 (205)
|||.+|+|+|+||||| |.++||+|++ ++++|++||+|+++|| ||+++|||||||++ .
T Consensus 1 MIq~~t~l~vaDNSGA--------k~v~cI~Vlgg~~~r~a~iGD~IvvsVK~~~p~~~vkkg~v~~AVIVRtkk~~rR~ 72 (121)
T 3bbo_M 1 MIQPQTHLNVADNSGA--------RELMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRAVVVRTCKELKRD 72 (121)
T ss_dssp CCCSSCEEEECSSSSE--------EEEEEEEECSSSCCCCCCTTCEEEEEEEEECSSSSSCSSCEEEEEEEECSSCEECT
T ss_pred CCCccCEEEEeeCCCC--------cEEEEEEEcCCCCccccccCcEEEEEEEEccCCCccccCcEEEEEEEEecCccccC
Confidence 9999999999999998 7789999998 5789999999999998 89999999999998 4
Q ss_pred CCCeeeeCCceEEEECCCCCccceEEecchhHHHHhhhhhhcccCCCCchhhhhhhHHH
Q psy4063 99 KPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGADYTNTLNSINNI 157 (205)
Q Consensus 99 dG~~ikFddNavVLLn~kg~PlGTRI~GPVp~ELR~k~~~~~~~~~~~~~KIlSlA~~i 157 (205)
||++++|||||+||+|++|+|+|||||||||+|||++ |+||+|||+++
T Consensus 73 dG~~i~FddNa~Vlin~~g~p~GTrI~GPVarElr~~-----------~~KI~SlA~~v 120 (121)
T 3bbo_M 73 NGMIIRYDDNAAVIIDQEGNPKGTRIFGAIARELRQK-----------FAKIVSLAPEV 120 (121)
T ss_dssp TSCEECCSSCEEEECCTTSSCSSSCCCSCCCGGGTTT-----------CHHHHHHSSCC
T ss_pred CCCEEEeCCceEEEECCCCCEeEeEEEcCcCHHHHhc-----------chHhhhccchh
Confidence 8999999999999999999999999999999999987 99999999865
No 5
>1vq8_K 50S ribosomal protein L14P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.39.1.1 PDB: 1vq4_K* 1vq5_K* 1vq6_K* 1vq7_K* 1s72_K* 1vq9_K* 1vqk_K* 1vql_K* 1vqm_K* 1vqn_K* 1vqo_K* 1vqp_K* 1yhq_K* 1yi2_K* 1yij_K* 1yit_K* 1yj9_K* 1yjn_K* 1yjw_K* 2otj_K* ...
Probab=100.00 E-value=1.5e-42 Score=279.15 Aligned_cols=109 Identities=18% Similarity=0.337 Sum_probs=101.7
Q ss_pred cccccccccCeEEEEeCChhcccccccCCCcEEEEEcc----CCcc--cccCCEEEEEE-------cCeeeeEEEEeEEe
Q psy4063 30 PCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYN----QTHI--GTIGDKVLVAI-------KGEKKKGIIVGVKK 96 (205)
Q Consensus 30 ~~~~MIqk~T~L~VaDNSGagk~~~~~~K~v~CI~V~~----k~r~--A~IGD~IvVSV-------KGeV~kAVIVRtKk 96 (205)
..+.|||.+|+|+|+||||| |.++||+|++ ++++ |++||+|+|+| |||+++|||||||+
T Consensus 7 ~~~~mIq~~t~l~vaDNSGA--------k~v~cI~V~g~~g~~~r~p~a~iGD~IvvsVKk~~p~~kg~v~~AVIVRtkk 78 (132)
T 1vq8_K 7 DVTQGLEKGSLITCADNTGA--------RELKVISVHGYSGTKNRLPKAGLGDKITVSVTKGTPEMRRQVLEAVVVRQRK 78 (132)
T ss_dssp EECCCEETTCEEEECBSSSE--------EEEEEEEETTCCCCTTCCCEECTTCEEEEEEEEECTTTTTCEEEEEEEECSS
T ss_pred ccccccccCCEEEEeeCCCC--------cEEEEEEEeCccCcccccCCCccCcEEEEEEEecCCCCCCcEEEEEEEEcCC
Confidence 45889999999999999998 7789999998 3567 99999999999 49999999999999
Q ss_pred c---cCCCeeeeCCceEEEECCCCCccceEEecchhHHHHhhhhhhcccCCCCchhhhhhhHHH
Q psy4063 97 H---QKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGADYTNTLNSINNI 157 (205)
Q Consensus 97 ~---~dG~~ikFddNavVLLn~kg~PlGTRI~GPVp~ELR~k~~~~~~~~~~~~~KIlSlA~~i 157 (205)
+ .||++++|||||+||||++|+|+||||+||||+|||++ |+||+|||+++
T Consensus 79 ~~rR~dG~~i~FddNA~Vlin~~g~p~GTrI~GPVarElr~~-----------~~KI~SlA~~v 131 (132)
T 1vq8_K 79 PIRRPDGTRVKFEDNAAVIVDENEDPRGTELKGPIAREVAQR-----------FGSVASAATMI 131 (132)
T ss_dssp CEECTTSCEEEESSCEEEEECTTSCBSSSCBCSEECHHHHHH-----------SHHHHTTCSEE
T ss_pred CcCcCCCcEEEeCCceEEEECCCCCEeEEEEEcCcCHHHHhc-----------ccHhhhccccc
Confidence 8 48999999999999999999999999999999999998 99999999865
No 6
>3j21_J 50S ribosomal protein L14P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=1.5e-42 Score=281.85 Aligned_cols=112 Identities=20% Similarity=0.266 Sum_probs=103.1
Q ss_pred ccccccccccccCeEEEEeCChhcccccccCCCcEEEEEccC----Cc--ccccCCEEEEEEc-------CeeeeEEEEe
Q psy4063 27 HTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQ----TH--IGTIGDKVLVAIK-------GEKKKGIIVG 93 (205)
Q Consensus 27 st~~~~~MIqk~T~L~VaDNSGagk~~~~~~K~v~CI~V~~k----~r--~A~IGD~IvVSVK-------GeV~kAVIVR 93 (205)
+....+.|||.+|+|+|+||||| |.++||+|++. ++ +|++||+|+|+|| ||+++|||||
T Consensus 13 ~~~~~~~mIq~~t~L~VaDNSGA--------k~v~cI~Vlg~kg~~~r~~~A~iGD~IvvsVKk~~p~~kg~V~kAVIVR 84 (141)
T 3j21_J 13 SAVRPTRALPVGAYLTVADNSGA--------KVIQIIGVVEYHGTRRRLASAGVGDMVVATVKKGRPDMRHQVVRAVIIR 84 (141)
T ss_dssp CCSBCCCCBCTTCEEEECSSSSE--------EEEEEEEETTCCCCTTCCCCBCSSCEEEEEEEEECTTTTTCEEEEEEEE
T ss_pred ccccccceeccCCEEEEccCCCC--------cEEEEEEEcCCCCcccccccCCcCCEEEEEEEecCCCCcCceEEEEEEE
Confidence 34556899999999999999998 77899999982 34 4999999999998 8999999999
Q ss_pred EEec---cCCCeeeeCCceEEEECCCCCccceEEecchhHHHHhhhhhhcccCCCCchhhhhhhHHH
Q psy4063 94 VKKH---QKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGADYTNTLNSINNI 157 (205)
Q Consensus 94 tKk~---~dG~~ikFddNavVLLn~kg~PlGTRI~GPVp~ELR~k~~~~~~~~~~~~~KIlSlA~~i 157 (205)
||++ .||++++|||||+||||++++|+|||||||||+|||++ |+||+|||+.|
T Consensus 85 tkk~~rR~dGs~i~FddNA~VLin~~g~p~GTRI~GPVarElr~~-----------~~KI~SlA~~i 140 (141)
T 3j21_J 85 QRKEYRRLDGMRVKFEDNAAVIVTPEGVPRGTEIRGPVAREAAER-----------WVRIGSIASII 140 (141)
T ss_dssp CSSCEECTTSCEECCSSCEEEEBCTTSCBCSSCCCSEECHHHHHH-----------CHHHHHHCSEE
T ss_pred eCCccCCCCCcEEEcCCcEEEEECCCCCEeeeEEEccccHHHHhh-----------chHHhhccccc
Confidence 9998 48999999999999999999999999999999999987 99999999865
No 7
>3u5e_V L17A, YL32, 60S ribosomal protein L23-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_M 1s1i_R 3izs_M* 3j16_I 3o5h_U 3o58_U 3u5i_V 4b6a_V 2x7n_C 3jyw_R 2zkr_k 3iz5_M 3izr_M 4a17_J 4a1a_J 4a1c_J 4a1e_J
Probab=100.00 E-value=1.3e-41 Score=275.32 Aligned_cols=109 Identities=16% Similarity=0.211 Sum_probs=101.5
Q ss_pred cccccccccCeEEEEeCChhcccccccCCCcEEEEEcc-CC-----cccccCCEEEEEEc-------CeeeeEEEEeEEe
Q psy4063 30 PCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYN-QT-----HIGTIGDKVLVAIK-------GEKKKGIIVGVKK 96 (205)
Q Consensus 30 ~~~~MIqk~T~L~VaDNSGagk~~~~~~K~v~CI~V~~-k~-----r~A~IGD~IvVSVK-------GeV~kAVIVRtKk 96 (205)
..+.+||++|+|+|+||||| |.++||+|++ ++ ++|++||+|+|+|| ||+++|||||||+
T Consensus 12 ~~~~gl~~~t~L~VaDNSGA--------k~v~cI~Vlg~~~r~~r~~~A~iGD~IvvsVK~~~p~~k~~V~~AVIVRtkk 83 (137)
T 3u5e_V 12 RISLGLPVGAIMNCADNSGA--------RNLYIIAVKGSGSRLNRLPAASLGDMVMATVKKGKPELRKKVMPAIVVRQAK 83 (137)
T ss_dssp CCCCCEETTCEEEECBSSSB--------CEEEEEEETTCCCCTTCCCEECTTCEEEEECSSBCTTTTTSCEEEEEEECCS
T ss_pred eecccccCCCEEEEeeCCCC--------cEEEEEEEeCCCCcccccccCCcCCEEEEEEEECCCCCCCcEEEEEEEEecc
Confidence 35789999999999999998 7889999998 22 37999999999998 8999999999999
Q ss_pred c---cCCCeeeeCCceEEEECCCCCccceEEecchhHHHHhhhhhhcccCCCCchhhhhhhHHH
Q psy4063 97 H---QKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGADYTNTLNSINNI 157 (205)
Q Consensus 97 ~---~dG~~ikFddNavVLLn~kg~PlGTRI~GPVp~ELR~k~~~~~~~~~~~~~KIlSlA~~i 157 (205)
+ .||++++|||||+||||++++|+|||||||||+|||++ |+||+|||+++
T Consensus 84 ~~rR~dG~~i~FddNA~Vlin~~g~p~GTrI~GPVarElr~~-----------~~KI~SlA~~v 136 (137)
T 3u5e_V 84 SWRRRDGVFLYFEDNAGVIANPKGEMKGSAITGPVGKECADL-----------WPRVASNSGVV 136 (137)
T ss_dssp CEECTTSCEEEESSCEEEEBCTTCCBSSSCBCSCBCHHHHTT-----------CHHHHHTCSSB
T ss_pred ccCcCCCeEEEcCCceEEEECCCCCEeeeEEEcchhHHHHHH-----------hhHHHhccccc
Confidence 8 48999999999999999999999999999999999987 99999999875
No 8
>3r87_A Putative uncharacterized protein; unknown function; 1.05A {Photobacterium profundum}
Probab=50.49 E-value=46 Score=23.63 Aligned_cols=62 Identities=6% Similarity=0.007 Sum_probs=34.7
Q ss_pred CcccccCCEEEEEEc-Ceee-eEEEEeEEec--cCCCeeeeCCceEEEECCCCCccceEEecchhHHHHhhh
Q psy4063 69 THIGTIGDKVLVAIK-GEKK-KGIIVGVKKH--QKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTIL 136 (205)
Q Consensus 69 ~r~A~IGD~IvVSVK-GeV~-kAVIVRtKk~--~dG~~ikFddNavVLLn~kg~PlGTRI~GPVp~ELR~k~ 136 (205)
++.+..||.|.|... .++- ..+.++..-. .+|..+---.--.|.+|.++.|. |+|.++++.|
T Consensus 67 ~~p~~~gd~v~v~t~v~~~~~~s~~~~~~i~~~~~g~~~a~~~~~~v~vd~~~r~~------~iP~~~~~~l 132 (135)
T 3r87_A 67 QDGVEFAEICDIRTSFTLDGKYKTLWRQEVWRPGASRAAVIGDIEMVCLDKEKRLQ------PVPADILASM 132 (135)
T ss_dssp CSCCCTTCEEEEEEEEEEETTTEEEEEEEEECTTCSSCSEEEEEEEEEECTTCCEE------CCCHHHHHHH
T ss_pred CCcccCCCEEEEEEEEEEeCCEEEEEEEEEEECCCCEEEEEEEEEEEEECCCCCEe------cCCHHHHHHh
Confidence 567889999998876 1111 1122222221 14443333334456777654443 8999999873
No 9
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=48.91 E-value=22 Score=27.72 Aligned_cols=41 Identities=20% Similarity=0.105 Sum_probs=31.1
Q ss_pred cccccCCEEEEEEc-CeeeeEEEEeEEeccCCCeeeeCCceEE
Q psy4063 70 HIGTIGDKVLVAIK-GEKKKGIIVGVKKHQKPHIPKTDTNNVV 111 (205)
Q Consensus 70 r~A~IGD~IvVSVK-GeV~kAVIVRtKk~~dG~~ikFddNavV 111 (205)
+..++||.|.+.-+ |..++|.|++.+.+ .--.+.|+||+.-
T Consensus 4 ~~v~vGq~V~akh~ngryy~~~V~~~~~~-~~y~V~F~DgS~s 45 (118)
T 2qqr_A 4 QSITAGQKVISKHKNGRFYQCEVVRLTTE-TFYEVNFDDGSFS 45 (118)
T ss_dssp SCCCTTCEEEEECTTSSEEEEEEEEEEEE-EEEEEEETTSCEE
T ss_pred ceeccCCEEEEECCCCCEEeEEEEEEeeE-EEEEEEcCCCCcc
Confidence 34689999997666 89999999998764 4455777777653
No 10
>2gf6_A Conserved hypothetical protein; putative thioesterase, structural genomics, joint center for structural genomics, JCSG; HET: COA; 1.91A {Sulfolobus solfataricus} SCOP: d.38.1.1
Probab=48.85 E-value=28 Score=24.31 Aligned_cols=59 Identities=15% Similarity=0.107 Sum_probs=32.9
Q ss_pred CCcccccCCEEEEEEc----C--eeeeEEEEeEEeccCCCeeeeCCceEEEECC-CCCccceEEecchhHHHHhhh
Q psy4063 68 QTHIGTIGDKVLVAIK----G--EKKKGIIVGVKKHQKPHIPKTDTNNVVLIDD-SGTPLGTRIHVPIPSMLRTIL 136 (205)
Q Consensus 68 k~r~A~IGD~IvVSVK----G--eV~kAVIVRtKk~~dG~~ikFddNavVLLn~-kg~PlGTRI~GPVp~ELR~k~ 136 (205)
-.+.+..||.|.|... | .+....-+. .+|..+---.--.|.+|. ++.|. |+|.++++.|
T Consensus 67 y~~~~~~gd~v~v~~~v~~~~~~s~~~~~~i~----~~g~~~a~~~~~~v~vd~~~~r~~------~ip~~~~~~l 132 (135)
T 2gf6_A 67 YHRPVKLGDKLTVLLNPKILSNKTIKFEFKVL----KDGELTTEGYVIQIAINPKIWKST------EMPKEIMDKL 132 (135)
T ss_dssp ECSCCCTTCEEEEEEEEEECSSSEEEEEEEEE----ETTEEEEEEEEEEEEEETTTTEEC------CCCHHHHHHH
T ss_pred ECCCCcCCCEEEEEEEEEEeCCcEEEEEEEEE----ECCEEEEEEEEEEEEEecccCcee------cCCHHHHHHh
Confidence 3567889999988776 2 222222222 244332222333456665 33333 8999999873
No 11
>2o5u_A Thioesterase; putative thioesterese,, hydrolase; 1.91A {Pseudomonas aeruginosa} SCOP: d.38.1.1 PDB: 2av9_A 2o6t_A 2o6b_A 2o6u_A
Probab=45.93 E-value=56 Score=23.46 Aligned_cols=61 Identities=11% Similarity=0.163 Sum_probs=32.9
Q ss_pred CcccccCCEEEEEEc-Ceee-eEEEEeEEe--ccCCCeeeeCCceEEEECC-CCCccceEEecchhHHHHhh
Q psy4063 69 THIGTIGDKVLVAIK-GEKK-KGIIVGVKK--HQKPHIPKTDTNNVVLIDD-SGTPLGTRIHVPIPSMLRTI 135 (205)
Q Consensus 69 ~r~A~IGD~IvVSVK-GeV~-kAVIVRtKk--~~dG~~ikFddNavVLLn~-kg~PlGTRI~GPVp~ELR~k 135 (205)
.+.+..||.|.|... .++- ..+.+...- ..+|..+---.--.|.+|. .+.|. |+|.++++.
T Consensus 74 ~~~~~~gd~v~v~t~v~~~~~~s~~~~~~i~~~~~g~~~a~~~~~~v~vd~~~~r~~------~ip~~~~~~ 139 (148)
T 2o5u_A 74 FAPVAFPQRIEMGLRVARLGNSSVQYELALFLEGQREACAAGRFVHVFVERRSSRPV------AIPQELRDA 139 (148)
T ss_dssp CSCCCTTSCEEEEEEEEEECSSEEEEEEEEEESSCCBCSEEEEEEEEEEETTTCCBC------CCCHHHHHH
T ss_pred cCcccCCCEEEEEEEEEEeCCcEEEEEEEEEECCCceEEEEEEEEEEEEECCCCccc------cCCHHHHHH
Confidence 567889999988776 1111 111122211 1234333333334566774 35554 899999998
No 12
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=37.49 E-value=42 Score=22.09 Aligned_cols=36 Identities=14% Similarity=0.108 Sum_probs=25.0
Q ss_pred cccCCEEEEEEc--CeeeeEEEEeEEeccCCCeeeeCC
Q psy4063 72 GTIGDKVLVAIK--GEKKKGIIVGVKKHQKPHIPKTDT 107 (205)
Q Consensus 72 A~IGD~IvVSVK--GeV~kAVIVRtKk~~dG~~ikFdd 107 (205)
-++||.+++--. |.-++|.|.......+...|.|.|
T Consensus 4 ~~~G~~c~A~~s~Dg~wYrA~I~~i~~~~~~~~V~f~D 41 (59)
T 1mhn_A 4 WKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTG 41 (59)
T ss_dssp CCTTCEEEEECTTTSCEEEEEEEEEETTTTEEEEEETT
T ss_pred CCcCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEEc
Confidence 368998777664 889999999874322334677765
No 13
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=36.36 E-value=45 Score=23.77 Aligned_cols=43 Identities=14% Similarity=0.056 Sum_probs=35.0
Q ss_pred ccccCCEEEEEEc-CeeeeEEEEeEEeccCCCeeeeCCceEEEE
Q psy4063 71 IGTIGDKVLVAIK-GEKKKGIIVGVKKHQKPHIPKTDTNNVVLI 113 (205)
Q Consensus 71 ~A~IGD~IvVSVK-GeV~kAVIVRtKk~~dG~~ikFddNavVLL 113 (205)
.=++||-|++.=. |..+-|-|++-.+...-..|+|.||.--.+
T Consensus 13 ~f~vGddVLA~wtDGl~Y~gtI~~V~~~~gtC~V~F~D~s~~w~ 56 (66)
T 2eqj_A 13 KFEEGQDVLARWSDGLFYLGTIKKINILKQSCFIIFEDSSKSWV 56 (66)
T ss_dssp CSCTTCEEEEECTTSCEEEEEEEEEETTTTEEEEEETTTEEEEE
T ss_pred cccCCCEEEEEEccCcEEEeEEEEEccCCcEEEEEEccCCEEEE
Confidence 3579999988855 999999999988765566899999986544
No 14
>2pzh_A Hypothetical protein HP_0496; lipid, acyl-COA, bacterial membrane, TOL-PAL system, thioest hot-DOG fold, hydrolase; 1.70A {Helicobacter pylori}
Probab=34.05 E-value=1.2e+02 Score=21.06 Aligned_cols=62 Identities=8% Similarity=0.111 Sum_probs=33.5
Q ss_pred CCcccccCCEEEEEEc----C--eeeeEEEEeEEeccC-----CCeeeeCCceEEEEC-CCCCccceEEecchhHHHHhh
Q psy4063 68 QTHIGTIGDKVLVAIK----G--EKKKGIIVGVKKHQK-----PHIPKTDTNNVVLID-DSGTPLGTRIHVPIPSMLRTI 135 (205)
Q Consensus 68 k~r~A~IGD~IvVSVK----G--eV~kAVIVRtKk~~d-----G~~ikFddNavVLLn-~kg~PlGTRI~GPVp~ELR~k 135 (205)
-.+.+..||.|.|... | .+....-+....... |..+---.--.|.+| +++.|. |+|.++++.
T Consensus 58 y~~~~~~gd~v~v~~~v~~~~~~s~~~~~~i~~~~~~~~~~~~g~~~a~~~~~~v~vd~~~~r~~------~ip~~~~~~ 131 (135)
T 2pzh_A 58 FFTPASLGQVLEIRTQIKELRKVFVVLFQEIYCIQNASLEPMKPFKVFASEIKFGFVNRSTYSPI------AIPKLFKEL 131 (135)
T ss_dssp ECSCCBTTCEEEEEEEEEEECSSEEEEEEEEEEEECTTCCCCCCEEEEEEEEEEEEECTTTCCEE------CCCHHHHHH
T ss_pred EccccccCCEEEEEEEEEEecceEEEEEEEEEeCCCccccccCceEEEEEEEEEEEEECCCCcEe------cCCHHHHHH
Confidence 3567889999988876 2 222222222221110 222222233356677 455554 889999887
No 15
>2cye_A TTHA1846, putative thioesterase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: COA; 1.90A {Thermus thermophilus} SCOP: d.38.1.1
Probab=32.10 E-value=86 Score=21.69 Aligned_cols=61 Identities=16% Similarity=0.294 Sum_probs=30.5
Q ss_pred CCcccccCCEEEEEEc--CeeeeEEEEeEEeccCCCeeeeCCceEEEECCCCCccceEEecchhHHHHhh
Q psy4063 68 QTHIGTIGDKVLVAIK--GEKKKGIIVGVKKHQKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTI 135 (205)
Q Consensus 68 k~r~A~IGD~IvVSVK--GeV~kAVIVRtKk~~dG~~ikFddNavVLLn~kg~PlGTRI~GPVp~ELR~k 135 (205)
..+.+..||.|.+..+ +.-.+.+.++..-..+|..+---.-..|.+| ++. --|+|.++++.
T Consensus 62 y~~~~~~gd~l~v~~~v~~~~~~s~~~~~~i~~~g~~~a~~~~~~v~~d-~~~------~~~~p~~~~~~ 124 (133)
T 2cye_A 62 YLRPILLGDEVFVGVRTVGLGRSSLRMEHLVTANGESAAKGLGVLVWLE-GGR------PAPLPEAIRER 124 (133)
T ss_dssp ECSCCBTTCEEEEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEEEEEE-TTE------ECCCCHHHHHH
T ss_pred EeccccCCCEEEEEEEEEEeCCcEEEEEEEEEECCEEEEEEEEEEEEEe-CCC------cccCCHHHHHH
Confidence 3456789999988765 1101112222221112332222222345566 333 34899999988
No 16
>2egj_A Hypothetical protein AQ_1494; structural genomics; 1.80A {Aquifex aeolicus} PDB: 2egi_A 2egr_A
Probab=31.39 E-value=1.2e+02 Score=20.56 Aligned_cols=56 Identities=14% Similarity=0.084 Sum_probs=30.1
Q ss_pred CcccccCCEEEEEEc----C--eeeeEEEEeEEeccCCCeeeeCCceEEEECCCCCccceEEecchhHHHHhh
Q psy4063 69 THIGTIGDKVLVAIK----G--EKKKGIIVGVKKHQKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTI 135 (205)
Q Consensus 69 ~r~A~IGD~IvVSVK----G--eV~kAVIVRtKk~~dG~~ikFddNavVLLn~kg~PlGTRI~GPVp~ELR~k 135 (205)
.+.+..||.|.|... | .+....-+.. +|..+---+-..|.+ +++.| -|+|.++++.
T Consensus 64 ~~~~~~gd~v~v~~~v~~~~~~~~~~~~~i~~----~g~~~a~~~~~~v~~-~~~r~------~~ip~~~~~~ 125 (128)
T 2egj_A 64 KKPLFYDDVFEVHLNLEELSRFTFTFSYIVFK----EDIAVAKANTKHCMV-KNGKI------VSIPKEVLEV 125 (128)
T ss_dssp CSCCCTTCEEEEEEEEEEECSSEEEEEEEEEE----TTEEEEEEEEEEEEE-ETTEE------CCCCHHHHHH
T ss_pred cCCCcCCCEEEEEEEEEEeCCcEEEEEEEEEE----CCEEEEEEEEEEEEE-eCCcE------ecCCHHHHHH
Confidence 467889999988775 2 1222222211 443322222233445 44444 3899999887
No 17
>1s5u_A Protein YBGC; structural genomics, hypothetical protein, thioesterase fold, PSI, protein structure initiative; 1.70A {Escherichia coli} SCOP: d.38.1.1
Probab=31.17 E-value=1.1e+02 Score=21.13 Aligned_cols=61 Identities=10% Similarity=0.122 Sum_probs=32.7
Q ss_pred CcccccCCEEEEEEc-Cee-eeEEEEeEEe-ccCCCeeeeCCceEEEECCC-CCccceEEecchhHHHHhh
Q psy4063 69 THIGTIGDKVLVAIK-GEK-KKGIIVGVKK-HQKPHIPKTDTNNVVLIDDS-GTPLGTRIHVPIPSMLRTI 135 (205)
Q Consensus 69 ~r~A~IGD~IvVSVK-GeV-~kAVIVRtKk-~~dG~~ikFddNavVLLn~k-g~PlGTRI~GPVp~ELR~k 135 (205)
.+.+..||.|.|... .++ ...+.++..- ..+|..+---.-..|.+|.+ +.| -|+|.++++.
T Consensus 69 ~~~~~~gd~v~v~~~v~~~~~~s~~~~~~i~~~~g~~~a~~~~~~v~vd~~~~r~------~~ip~~~~~~ 133 (138)
T 1s5u_A 69 YAPARLDDMLEIQTEITSMRGTSLVFTQRIVNAENTLLNEAEVLVVCVDPLKMKP------RALPKSIVAE 133 (138)
T ss_dssp CSCCCTTCEEEEEEEEEEECSSEEEEEEEEECTTCCEEEEEEEEEEEEETTTTEE------CCCCHHHHHH
T ss_pred CCcccCCCEEEEEEEEEEeCCeEEEEEEEEEecCCEEEEEEEEEEEEEeCCCCCE------ecCCHHHHHH
Confidence 567889999988776 111 1112222222 12454333333344566653 333 3899999987
No 18
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=30.79 E-value=63 Score=22.54 Aligned_cols=41 Identities=20% Similarity=0.216 Sum_probs=33.4
Q ss_pred ccCCEEEEEEc-CeeeeEEEEeEEeccCCCeeeeCCceEEEE
Q psy4063 73 TIGDKVLVAIK-GEKKKGIIVGVKKHQKPHIPKTDTNNVVLI 113 (205)
Q Consensus 73 ~IGD~IvVSVK-GeV~kAVIVRtKk~~dG~~ikFddNavVLL 113 (205)
..||-|++--. |..+-|-|++-.+......|+|+||.-.-+
T Consensus 5 ~~GedVLarwsDG~fYlGtI~~V~~~~~~clV~F~D~s~~W~ 46 (58)
T 4hcz_A 5 WEGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDDSQFLV 46 (58)
T ss_dssp CTTCEEEEECTTSCEEEEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred ccCCEEEEEecCCCEEeEEEEEEecCCCEEEEEEcCCCeEEE
Confidence 57888888777 899999999988766677899999976543
No 19
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=30.37 E-value=60 Score=21.76 Aligned_cols=36 Identities=14% Similarity=0.149 Sum_probs=25.7
Q ss_pred cccCCEEEEEEc--CeeeeEEEEeEEeccCCCeeeeCC
Q psy4063 72 GTIGDKVLVAIK--GEKKKGIIVGVKKHQKPHIPKTDT 107 (205)
Q Consensus 72 A~IGD~IvVSVK--GeV~kAVIVRtKk~~dG~~ikFdd 107 (205)
-++||.+++--. |+-++|.|.......+...|.|.|
T Consensus 9 ~~vGd~c~A~~s~Dg~wYrA~I~~v~~~~~~~~V~fvd 46 (64)
T 4a4f_A 9 WKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAG 46 (64)
T ss_dssp CCTTCEEEEECTTTSSEEEEEEEEEETTTTEEEEEETT
T ss_pred CCCCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEEe
Confidence 478998887664 899999999876432334566665
No 20
>1njk_A Hypothetical protein YBAW; structural genomics, thioesterase, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Escherichia coli} SCOP: d.38.1.1
Probab=29.42 E-value=59 Score=23.77 Aligned_cols=62 Identities=15% Similarity=0.125 Sum_probs=33.4
Q ss_pred CCcccccCCEEEEEEc-Ceee-eEEEEeEEe--ccCCCeeeeCCceEEEECC-CCCccceEEecchhHHHHhh
Q psy4063 68 QTHIGTIGDKVLVAIK-GEKK-KGIIVGVKK--HQKPHIPKTDTNNVVLIDD-SGTPLGTRIHVPIPSMLRTI 135 (205)
Q Consensus 68 k~r~A~IGD~IvVSVK-GeV~-kAVIVRtKk--~~dG~~ikFddNavVLLn~-kg~PlGTRI~GPVp~ELR~k 135 (205)
..+.+..||.|.|... .++- ..+.+...- ..+|..+---.--.|.+|. .+.|. |+|.++|+.
T Consensus 82 y~~p~~~gd~l~v~~~v~~~g~~s~~~~~~i~~~~~g~~~a~~~~~~v~vd~~~~r~~------~iP~~~~~~ 148 (156)
T 1njk_A 82 YRRPAVLSDLLTITSQLQQLNGKSGILSQVITLEPEGQVVADALITFVCIDLKTQKAL------ALEGELREK 148 (156)
T ss_dssp ECSCCCTTCEEEEEEEEEEEETTEEEEEEEEEETTTTEEEEEEEEEEEEEETTTTEEE------CSSTTTTHH
T ss_pred EeCCCCCCCEEEEEEEEEEeCCeEEEEEEEEEECCCCeEEEEEEEEEEEEECCCCccc------CCCHHHHHH
Confidence 3567889999988775 1111 112333322 1244433333334466664 34443 899999887
No 21
>3ck1_A Putative thioesterase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.74A {Ralstonia eutropha}
Probab=28.25 E-value=87 Score=22.24 Aligned_cols=64 Identities=14% Similarity=0.221 Sum_probs=31.3
Q ss_pred CcccccCCEEEEEEc-Ceee-eEEEEeEEec-cCCCeeeeCCceEEEECCCCCccceEEecchhHHHHhhhh
Q psy4063 69 THIGTIGDKVLVAIK-GEKK-KGIIVGVKKH-QKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILK 137 (205)
Q Consensus 69 ~r~A~IGD~IvVSVK-GeV~-kAVIVRtKk~-~dG~~ikFddNavVLLn~kg~PlGTRI~GPVp~ELR~k~~ 137 (205)
.+.+..||.|.|... .++- ..+.+...-. .+|..+---.-..|.+|.+ |+=--|+|.++++.|.
T Consensus 69 ~~~~~~gd~v~v~~~v~~~~~~s~~~~~~i~~~~g~~~a~~~~~~v~vd~~-----~~r~~~ip~~~~~~l~ 135 (150)
T 3ck1_A 69 VAPSRLGETLTRELRVVKLGQSSFTVQVRFMGPDSGLRLEVTQRLVCVDTD-----KIAPRPLPDPVRQAMA 135 (150)
T ss_dssp CSCCBTTCEEEEEEEEEEECSSEEEEEEEEECTTSCEEEEEEEEEECEEET-----TEEECCCCHHHHHHHH
T ss_pred eCCCcCCCEEEEEEEEEEEcCcEEEEEEEEEeCCCEEEEEEEEEEEEEeCC-----CCccccCCHHHHHHHH
Confidence 467889999988775 1111 1112222111 1343222222234455522 2223389999999843
No 22
>4i4j_A ACP-polyene thioesterase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: TAR; 2.78A {Streptomyces globisporus}
Probab=28.17 E-value=1.1e+02 Score=22.55 Aligned_cols=66 Identities=9% Similarity=-0.001 Sum_probs=35.2
Q ss_pred CCcccccCCEEEEEEc----C--eeeeEEEEeEEec-cCCCeeeeCCceEEEECCCCCccceEEecchhHHHHhhh
Q psy4063 68 QTHIGTIGDKVLVAIK----G--EKKKGIIVGVKKH-QKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTIL 136 (205)
Q Consensus 68 k~r~A~IGD~IvVSVK----G--eV~kAVIVRtKk~-~dG~~ikFddNavVLLn~kg~PlGTRI~GPVp~ELR~k~ 136 (205)
-.+.+..||.|.|... | .+....-+..... .+|..+---.--.|.+|.+. |++---|||.++++.|
T Consensus 72 y~~p~~~gd~v~v~t~v~~~~~~s~~~~~~i~~~~~~~~g~~~a~~~~~~v~vd~~~---~~~r~~~iP~~~~~~l 144 (159)
T 4i4j_A 72 FFAEITAFDELSIRMRLSELRQTQLEFTFDYIKLGDDGGETLVARGRQRIACMRGPN---TATVPTLIPEALAEAL 144 (159)
T ss_dssp ECSCCCTTCEEEEEEEEEEECSSEEEEEEEEEEECSSSCEEEEEEEEEEEEEEESCS---SSCEECCCCHHHHHHT
T ss_pred ECCCCCCCCEEEEEEEEEEecCcEEEEEEEEEECCCCCCCeEEEEEEEEEEEEECCC---CCCcEecCCHHHHHHH
Confidence 3567889999998876 2 2222222222110 12332222233466777652 1233349999999983
No 23
>2ali_A Hypothetical protein PA2801; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.75A {Pseudomonas aeruginosa} SCOP: d.38.1.1 PDB: 3qy3_A
Probab=27.71 E-value=1.1e+02 Score=22.61 Aligned_cols=62 Identities=11% Similarity=0.170 Sum_probs=32.0
Q ss_pred CCcccccCCEEEEEEc-Ceee-eEEEEeEEe--ccC-CCeeeeCCceEEEECC-CCCccceEEecchhHHHHhh
Q psy4063 68 QTHIGTIGDKVLVAIK-GEKK-KGIIVGVKK--HQK-PHIPKTDTNNVVLIDD-SGTPLGTRIHVPIPSMLRTI 135 (205)
Q Consensus 68 k~r~A~IGD~IvVSVK-GeV~-kAVIVRtKk--~~d-G~~ikFddNavVLLn~-kg~PlGTRI~GPVp~ELR~k 135 (205)
-.+.+..||.|.|... .++- ..+.+...- ..+ |..+---+--.|.+|. ++.|. |+|.++++.
T Consensus 87 y~~p~~~gd~v~v~t~v~~~~~~s~~~~~~i~~~~~~g~~~a~a~~~~v~vd~~~~rp~------~iP~~~~~~ 154 (158)
T 2ali_A 87 YLKPVVHPATVVVELYAGRLGTSSLVLEHRLHTLEDPQGTYGEGHCKLVWVRHAENRST------PVPDSIRAA 154 (158)
T ss_dssp ECSCCCSSCEEEEEEEEEEECSSEEEEEEEEEESSCTTSCCEEEEEEEEEEEGGGTEEC------CCCHHHHHH
T ss_pred EeccccCCCEEEEEEEEEEecCcEEEEEEEEEECCCCCEEEEEEEEEEEEEECCCCccc------CCCHHHHHH
Confidence 3567889999988776 1111 111111111 113 4333222333456664 34443 899999987
No 24
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=27.01 E-value=68 Score=23.35 Aligned_cols=36 Identities=14% Similarity=0.108 Sum_probs=25.5
Q ss_pred cccCCEEEEEEc--CeeeeEEEEeEEeccCCCeeeeCC
Q psy4063 72 GTIGDKVLVAIK--GEKKKGIIVGVKKHQKPHIPKTDT 107 (205)
Q Consensus 72 A~IGD~IvVSVK--GeV~kAVIVRtKk~~dG~~ikFdd 107 (205)
-++||.+++--. |.-++|+|.......+...|.|.|
T Consensus 11 ~kvGd~C~A~ys~Dg~wYrA~I~~i~~~~~~~~V~fiD 48 (88)
T 1g5v_A 11 WKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTG 48 (88)
T ss_dssp CCSSCEEEEECTTTCCEEEEEEEEEETTTTEEEEEETT
T ss_pred CCCCCEEEEEECCCCCEEEEEEEEecCCCCEEEEEEec
Confidence 578998877764 899999999875432334566654
No 25
>3r8s_P 50S ribosomal protein L19; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P* 2qao_P* 2qba_P* 2qbc_P* 2qbe_P 2qbg_P 2qbi_P* 2qbk_P* 2qov_P 2qox_P 2qoz_P* 2qp1_P* ...
Probab=26.53 E-value=72 Score=24.74 Aligned_cols=26 Identities=23% Similarity=0.463 Sum_probs=22.1
Q ss_pred cccCCEEEEEEc---C-----eeeeEEEEeEEec
Q psy4063 72 GTIGDKVLVAIK---G-----EKKKGIIVGVKKH 97 (205)
Q Consensus 72 A~IGD~IvVSVK---G-----eV~kAVIVRtKk~ 97 (205)
-.+||+|.|.++ | |.+.|+|+.-+..
T Consensus 19 f~~GDtv~V~~~i~EG~keRiQ~F~GvvI~~~~~ 52 (114)
T 3r8s_P 19 FRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNR 52 (114)
T ss_dssp CCTTCEEEEEEEEEETTEEEEEEEEEEEEEEECC
T ss_pred cCCCCEEEEEEEEecCCceeeeeEEEEEEEEECC
Confidence 579999999997 4 5899999998764
No 26
>1whm_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=25.95 E-value=1e+02 Score=23.09 Aligned_cols=52 Identities=13% Similarity=0.109 Sum_probs=38.2
Q ss_pred cccCCEEEEEEcCeeeeEEE--EeEEecc--CCCe--eeeCCceEEEECCCCCccceEEec
Q psy4063 72 GTIGDKVLVAIKGEKKKGII--VGVKKHQ--KPHI--PKTDTNNVVLIDDSGTPLGTRIHV 126 (205)
Q Consensus 72 A~IGD~IvVSVKGeV~kAVI--VRtKk~~--dG~~--ikFddNavVLLn~kg~PlGTRI~G 126 (205)
-.|||.+.|...++..+++| |..-... .|.+ |.||+- +=+++|...|.|.|+
T Consensus 10 i~VG~Rc~V~~~~~~rrGtVrfvG~~~~~~~~G~wVGVelDEP---~GknDGsv~G~ryF~ 67 (92)
T 1whm_A 10 LEINSRVSLKVGETIESGTVIFCDVLPGKESLGYFVGVDMDNP---IGNWDGRFDGVQLCS 67 (92)
T ss_dssp SCTTCEEEEEETTEEEEEEEEEEECCTTCTTTCCEEEEEESSS---CCCCCSEETTEESCS
T ss_pred ccccCeEEEcCCCceeeEEEEEEecCCCcCCCCeEEEEEcCCC---CCCCCCeECCEEecc
Confidence 47999999998877788877 3322112 3554 788888 447889999999997
No 27
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=25.82 E-value=1e+02 Score=19.64 Aligned_cols=35 Identities=9% Similarity=0.029 Sum_probs=22.3
Q ss_pred ccCCEEEEEEc--CeeeeEEEEeEEeccCCCeeeeCC
Q psy4063 73 TIGDKVLVAIK--GEKKKGIIVGVKKHQKPHIPKTDT 107 (205)
Q Consensus 73 ~IGD~IvVSVK--GeV~kAVIVRtKk~~dG~~ikFdd 107 (205)
++||.+.+--. |.-++|.|.......+...|.|.|
T Consensus 3 k~G~~c~A~~s~Dg~wYrA~I~~i~~~~~~~~V~fvD 39 (54)
T 3s6w_A 3 KPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFID 39 (54)
T ss_dssp CTTCEEEEEETTTTEEEEEEEEEC--CCSEEEEEETT
T ss_pred CCCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEc
Confidence 57898888764 899999999764322222355543
No 28
>2oiw_A Putative 4-hydroxybenzoyl-COA thioesterase; structural genomics, protein structure initiative, midwest center for structu genomics; 2.00A {Geobacillus stearothermophilus} SCOP: d.38.1.1
Probab=25.26 E-value=1.2e+02 Score=21.12 Aligned_cols=63 Identities=21% Similarity=0.205 Sum_probs=32.0
Q ss_pred CCcccccCCEEEEEEc-Cee-eeEEEEeEEeccCCCeeeeCCceEEEECCC-CCccceEEecchhHHHHhhh
Q psy4063 68 QTHIGTIGDKVLVAIK-GEK-KKGIIVGVKKHQKPHIPKTDTNNVVLIDDS-GTPLGTRIHVPIPSMLRTIL 136 (205)
Q Consensus 68 k~r~A~IGD~IvVSVK-GeV-~kAVIVRtKk~~dG~~ikFddNavVLLn~k-g~PlGTRI~GPVp~ELR~k~ 136 (205)
-.+.+..||.|.|... .++ ...+.++..-..+|..+---.-..|.+|.+ +.|. |+|.++++.|
T Consensus 62 y~~~~~~gd~v~v~~~v~~~~~~s~~~~~~i~~~g~~~a~~~~~~v~vd~~~~r~~------~ip~~~~~~l 127 (136)
T 2oiw_A 62 YVNQMYYGQDVTVYTGIERIGNTSLTIYEEIHQNGVVCAKGRSVYVNFNFDTGRPE------PIPDDIRVKL 127 (136)
T ss_dssp ECSCCCTTSCEEEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEEEEEETTTTEEC------CCCHHHHHHH
T ss_pred EcccCCCCCEEEEEEEEEecCCcEEEEEEEEEECCEEEEEEEEEEEEEECCCCccc------cCCHHHHHHH
Confidence 3466889999988775 111 111112221111343222223334556643 3343 8999999883
No 29
>2fuj_A Conserved hypothetical protein; structural genomics, conserved hypot protein, hot DOG domain, acyl-COA thioesterase, hydrolase; 1.70A {Xanthomonas campestris PV} SCOP: d.38.1.1
Probab=25.06 E-value=1.7e+02 Score=20.23 Aligned_cols=62 Identities=16% Similarity=0.237 Sum_probs=24.9
Q ss_pred CCcccccCCEEEEEEc-Ceee-eEEEEeEEe--ccC-CCeeeeCCceEEEECC-CCCccceEEecchhHHHHhh
Q psy4063 68 QTHIGTIGDKVLVAIK-GEKK-KGIIVGVKK--HQK-PHIPKTDTNNVVLIDD-SGTPLGTRIHVPIPSMLRTI 135 (205)
Q Consensus 68 k~r~A~IGD~IvVSVK-GeV~-kAVIVRtKk--~~d-G~~ikFddNavVLLn~-kg~PlGTRI~GPVp~ELR~k 135 (205)
..+.+..||.|.|... .++- ..+.+...- ..+ |..+---.--.|.+|. .+.|. |+|.++|++
T Consensus 68 y~~~~~~gd~v~v~~~v~~~~~~s~~~~~~i~~~~~~g~~~a~~~~~~v~vd~~~~r~~------~ip~~~~~~ 135 (137)
T 2fuj_A 68 YKRPLVWPNDILVELFVERLGSSSVTIGHRILDQKDEGVLYSDGNVVVVWIDTQTGKSA------SLPDAVRAA 135 (137)
T ss_dssp ECSCCCTTCCEEEEEEEEEECSSEEEEEEEEEESSCTTCEEEEEEEEEEEESSSCCCC----------------
T ss_pred EeCCccCCCEEEEEEEEEEecCcEEEEEEEEEeCCCCCeEEEEEEEEEEEEECCCCCcC------CCCHHHHHh
Confidence 3567889999988765 1111 112222221 123 4433333334566774 45554 889998876
No 30
>2ftc_K 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=24.84 E-value=96 Score=23.39 Aligned_cols=25 Identities=16% Similarity=0.139 Sum_probs=21.0
Q ss_pred ccCCEEEEEEc--C-----eeeeEEEEeEEec
Q psy4063 73 TIGDKVLVAIK--G-----EKKKGIIVGVKKH 97 (205)
Q Consensus 73 ~IGD~IvVSVK--G-----eV~kAVIVRtKk~ 97 (205)
.+||+|.|.++ | |.+.|+|+..+..
T Consensus 5 ~~GDtv~V~~~i~g~k~R~q~F~GvvI~~~~~ 36 (98)
T 2ftc_K 5 YVGSILRVTTADPYASGKISQFLGICIQRSGR 36 (98)
T ss_pred CCCCEEEEEEEECCCceEeeeEEEEEEEEECC
Confidence 58999999987 2 7899999997764
No 31
>3v2d_T 50S ribosomal protein L19; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_S 2hgj_S 2hgu_S 2j03_T 2jl6_T 2jl8_T 2v47_T 2v49_T 2wdi_T 2wdj_T 2wdl_T 2wdn_T 2wh2_T 2wh4_T 2wrj_T 2wrl_T 2wro_T 2wrr_T 2x9s_T 2x9u_T ...
Probab=24.78 E-value=78 Score=25.65 Aligned_cols=26 Identities=31% Similarity=0.562 Sum_probs=22.2
Q ss_pred cccCCEEEEEEc---C-----eeeeEEEEeEEec
Q psy4063 72 GTIGDKVLVAIK---G-----EKKKGIIVGVKKH 97 (205)
Q Consensus 72 A~IGD~IvVSVK---G-----eV~kAVIVRtKk~ 97 (205)
-.+||+|.|.++ | +.+.|||+.-+..
T Consensus 22 F~~GDtV~V~~~i~EG~keRiQ~FeGvVI~rr~~ 55 (146)
T 3v2d_T 22 FRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRN 55 (146)
T ss_dssp CCTTCEEEEEEEEECSSCEEEEEEEEEEEEEECC
T ss_pred cCCCCEEEEEEEEccCCceeeeeEEEEEEEEECC
Confidence 579999999998 4 6899999998864
No 32
>2hx5_A Hypothetical protein; thioesterase/thiol ester dehydrase-isomerase fold, structura genomics, joint center for structural genomics, JCSG; 1.50A {Prochlorococcus marinus} SCOP: d.38.1.1
Probab=23.54 E-value=1.6e+02 Score=21.12 Aligned_cols=58 Identities=10% Similarity=0.110 Sum_probs=32.1
Q ss_pred CcccccCCEEEEEEc----C--eeeeEEEEeEEeccCCCeeeeCCceEEEECC-CCCccceEEecchhHHHHhhh
Q psy4063 69 THIGTIGDKVLVAIK----G--EKKKGIIVGVKKHQKPHIPKTDTNNVVLIDD-SGTPLGTRIHVPIPSMLRTIL 136 (205)
Q Consensus 69 ~r~A~IGD~IvVSVK----G--eV~kAVIVRtKk~~dG~~ikFddNavVLLn~-kg~PlGTRI~GPVp~ELR~k~ 136 (205)
.+.+..||.|.|... | .+....-+. .+|..+---.--.|.+|. ++.| -|+|.++++.|
T Consensus 77 ~~p~~~gd~i~v~t~v~~~~~~s~~~~~~i~----~~g~~~a~~~~~~v~vd~~~~r~------~~iP~~~~~~l 141 (152)
T 2hx5_A 77 RRPIHTGDALAMELRPERLNPNSFQVHFEFR----CEEQIAAHALIRHLAINAQTRHR------CALPEGIDRWL 141 (152)
T ss_dssp CSCCCTTCEEEEEEEEEEEETTEEEEEEEEE----ETTEEEEEEEEEEECEETTTCCB------CCCCHHHHHHH
T ss_pred cCCCCCCCEEEEEEEEEEeCCcEEEEEEEEE----ECCEEEEEEEEEEEEEeCCCCeE------ecCCHHHHHHH
Confidence 567889999988876 1 222222221 134322222233455664 3444 38999999884
No 33
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=23.48 E-value=17 Score=28.53 Aligned_cols=40 Identities=13% Similarity=0.090 Sum_probs=31.0
Q ss_pred ccccCCEEEEEEc-CeeeeEEEEeEEeccCCCeeeeCCceEE
Q psy4063 71 IGTIGDKVLVAIK-GEKKKGIIVGVKKHQKPHIPKTDTNNVV 111 (205)
Q Consensus 71 ~A~IGD~IvVSVK-GeV~kAVIVRtKk~~dG~~ikFddNavV 111 (205)
..++||.|.+--+ |..++|.|++.+. ..--.+.|+||+.-
T Consensus 6 ~v~vGq~V~ak~~ngryy~~~V~~~~~-~~~y~V~F~DgS~s 46 (123)
T 2xdp_A 6 VISVGQTVITKHRNTRYYSCRVMAVTS-QTFYEVMFDDGSFS 46 (123)
T ss_dssp CCCTTCCCCCCCCCCCCCCCEEEEEEE-EEEEEEEETTSCEE
T ss_pred ccccCCEEEEECCCCcEEeEEEEEEee-EEEEEEEcCCCCcc
Confidence 4578888886555 8999999999997 44556888888776
No 34
>1z54_A Probable thioesterase; hypothetical protein, structural genom NPPSFA, riken structural genomics/proteomics initiative; 2.10A {Thermus thermophilus} SCOP: d.38.1.1
Probab=22.30 E-value=1.7e+02 Score=19.96 Aligned_cols=15 Identities=20% Similarity=0.242 Sum_probs=12.0
Q ss_pred CcccccCCEEEEEEc
Q psy4063 69 THIGTIGDKVLVAIK 83 (205)
Q Consensus 69 ~r~A~IGD~IvVSVK 83 (205)
.+.+..||.|.|...
T Consensus 64 ~~~~~~gd~v~v~~~ 78 (132)
T 1z54_A 64 RAPARFGEVVEVRTR 78 (132)
T ss_dssp CSCCCTTCEEEEEEE
T ss_pred eccCCCCCEEEEEEE
Confidence 456789999988776
No 35
>3hm0_A Probable thioesterase; niaid, ssgcid, decode, UW, SBRI, infectious disease, rhizobiales, bacteremia, endocarditis, bacillary angiomatosis; 2.50A {Bartonella henselae}
Probab=21.88 E-value=1.1e+02 Score=23.12 Aligned_cols=62 Identities=13% Similarity=0.204 Sum_probs=29.2
Q ss_pred CCcccccCCEEEEEEc-Ceee-eEEEEeEEeccCCCeeeeCCceEEEECCCCCccceEEecchhHHHHhh
Q psy4063 68 QTHIGTIGDKVLVAIK-GEKK-KGIIVGVKKHQKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTI 135 (205)
Q Consensus 68 k~r~A~IGD~IvVSVK-GeV~-kAVIVRtKk~~dG~~ikFddNavVLLn~kg~PlGTRI~GPVp~ELR~k 135 (205)
-++.+..||.|.|... .++- ..+.++..-..+|..+---.--.|.+|.++.|. |||.++|++
T Consensus 101 y~~p~~~gd~i~V~t~v~~~~~~s~~~~~~i~~~g~~~a~a~~~~V~vD~~~rp~------~iP~~~r~~ 164 (167)
T 3hm0_A 101 FSRPAQIDNLLTIKTRISRLQGARFFMEQYILHGESMLVTAKVEIALINEEGKPR------RLPKELFST 164 (167)
T ss_dssp ECSCCCTTCEEEEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEEEEEETTSCBC------CCCC-----
T ss_pred EecCCCCCCEEEEEEEEEEeCCeEEEEEEEEEECCEEEEEEEEEEEEECCCCCEe------cCCHHHHHH
Confidence 3567889999988876 1111 111122211114433333333456777664443 889998876
No 36
>2hlj_A Hypothetical protein; putative thioesterase, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 2.00A {Pseudomonas putida} SCOP: d.38.1.1
Probab=21.56 E-value=1.9e+02 Score=20.58 Aligned_cols=61 Identities=15% Similarity=0.075 Sum_probs=29.5
Q ss_pred CcccccCCEEEEEEc-Ceee-eEEEEeEEec-c-CCCeeeeCCceEEEECC-CCCccceEEecchhHHHHhh
Q psy4063 69 THIGTIGDKVLVAIK-GEKK-KGIIVGVKKH-Q-KPHIPKTDTNNVVLIDD-SGTPLGTRIHVPIPSMLRTI 135 (205)
Q Consensus 69 ~r~A~IGD~IvVSVK-GeV~-kAVIVRtKk~-~-dG~~ikFddNavVLLn~-kg~PlGTRI~GPVp~ELR~k 135 (205)
.+.+..||.|.|... .++- ..+.+...-. . +|..+---.-..|.+|. ++.| -|+|.++++.
T Consensus 67 ~~~~~~gd~v~v~~~v~~~~~~s~~~~~~i~~~~~g~~~a~~~~~~v~vd~~~~r~------~~ip~~~~~~ 132 (157)
T 2hlj_A 67 LHEVKLGTEVWVQTQILGFDRKRLHVYHSLHRAGFDEVLAASEQMLLHVDLAGPQS------APFGHTTVCR 132 (157)
T ss_dssp CSCCBTTCEEEEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEEEEEEBCC---CB------CCCCHHHHHH
T ss_pred ecccCCCCEEEEEEEEEEeCCcEEEEEEEEEECCCCcEEEEEEEEEEEEECCCCcc------CCCCHHHHHH
Confidence 467789999988775 1111 1111111111 1 23222222223455663 3444 3889999987
No 37
>1lo7_A 4-hydroxybenzoyl-COA thioesterase; hot DOG fold, catalytic mechanism, hydrolase; HET: 4CO; 1.50A {Pseudomonas SP} SCOP: d.38.1.1 PDB: 1bvq_A* 1lo8_A* 1lo9_A*
Probab=21.27 E-value=1.8e+02 Score=20.14 Aligned_cols=64 Identities=6% Similarity=-0.033 Sum_probs=31.7
Q ss_pred CcccccCCEEEEEEc----C--eeeeEEEEeEEeccCC-CeeeeCCceEEEECCCCCccceEEecchhHHHHhh
Q psy4063 69 THIGTIGDKVLVAIK----G--EKKKGIIVGVKKHQKP-HIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTI 135 (205)
Q Consensus 69 ~r~A~IGD~IvVSVK----G--eV~kAVIVRtKk~~dG-~~ikFddNavVLLn~kg~PlGTRI~GPVp~ELR~k 135 (205)
.+.+..||.|.|... | .+....-+....+.+| ..+---.--.|.+|.+ ..|+---|+|.++++.
T Consensus 69 ~~p~~~gd~v~v~~~v~~~~~~s~~~~~~i~~~~~~~g~~~~a~~~~~~v~vd~~---~~~~r~~~ip~~~~~~ 139 (141)
T 1lo7_A 69 VCTASYDDVLTIETCIKEWRRKSFVQRHSVSRTTPGGDVQLVMRADEIRVFAMND---GERLRAIEVPADYIEL 139 (141)
T ss_dssp CSCCCTTCEEEEEEEEEEECSSEEEEEEEEEEECTTSCEEEEEEEEEEEEEEEEE---TTEEEEECCCHHHHHH
T ss_pred cCCCCCCCEEEEEEEEEEEcceEEEEEEEEEECCCCCCcEEEEEEEEEEEEEecC---CCCccEecCCHHHHHh
Confidence 567889999988776 2 1222222211100134 3222223334556610 1233345899999876
No 38
>2nuj_A Thioesterase superfamily; YP_509914.1, structural genomics, protein structure initiative, joint center for structural G JCSG, hydrolase; 2.00A {Jannaschia} SCOP: d.38.1.1
Probab=21.09 E-value=2.5e+02 Score=20.53 Aligned_cols=63 Identities=14% Similarity=0.163 Sum_probs=33.5
Q ss_pred CCcccccCCEEEEEEc-Cee-eeEEEEeEEec-cCCCeeeeCCc--eEEEECC-CCCccceEEecchhHHHHhhh
Q psy4063 68 QTHIGTIGDKVLVAIK-GEK-KKGIIVGVKKH-QKPHIPKTDTN--NVVLIDD-SGTPLGTRIHVPIPSMLRTIL 136 (205)
Q Consensus 68 k~r~A~IGD~IvVSVK-GeV-~kAVIVRtKk~-~dG~~ikFddN--avVLLn~-kg~PlGTRI~GPVp~ELR~k~ 136 (205)
-++.+..||.|.|... .++ ...+.+...-. .+|..+---.- -.|.+|. .+.|. |+|.++++.|
T Consensus 85 y~~~~~~gd~i~v~t~v~~~~~~s~~~~~~i~~~~g~~~a~~~~~~~~v~vd~~~~r~~------~ip~~~~~~l 153 (163)
T 2nuj_A 85 YLAEMGMGEDYVITGRVSNFRTTSFTMEFACWRLGDAVECTSEGSAVVVLLNRDGSGRY------PIPEAGRASF 153 (163)
T ss_dssp ECSCCCTTCEEEEEEEEEEECSSEEEEEEEEEECSSSCEEEEEEEEEEEEECTTSSSBC------CCCHHHHHHH
T ss_pred EecCccCCCEEEEEEEEEEeCCcEEEEEEEEEeCCCEEEEEEEEeeEEEEEECCCCCCc------cCCHHHHHHH
Confidence 3567889999988776 111 11122222211 14443222222 3566775 34444 8999999884
No 39
>2oaf_A Thioesterase superfamily; YP_508616.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2, hydrolase; HET: CIT PGE; 2.00A {Jannaschia SP} SCOP: d.38.1.1
Probab=20.99 E-value=1.2e+02 Score=21.80 Aligned_cols=59 Identities=14% Similarity=-0.069 Sum_probs=31.0
Q ss_pred CCcccccCCEEEEEEc----C--eeeeEEEEeEEeccCCCeeeeCCceEEEECCCCCccceEEecchhHHHHhh
Q psy4063 68 QTHIGTIGDKVLVAIK----G--EKKKGIIVGVKKHQKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTI 135 (205)
Q Consensus 68 k~r~A~IGD~IvVSVK----G--eV~kAVIVRtKk~~dG~~ikFddNavVLLn~kg~PlGTRI~GPVp~ELR~k 135 (205)
-.+.+..||.|.|... | .+....-+. .+|..+---.--.|.+|.+ |+=--|+|.++++.
T Consensus 80 y~~~~~~gd~v~v~t~v~~~~~~s~~~~~~i~----~~g~~~a~~~~~~v~vd~~-----~~r~~~ip~~~~~~ 144 (151)
T 2oaf_A 80 FKSPVTPRHILKCHTWPTRLGTKSITFRVDGV----QDGVTCFVGAFTCVFTIAD-----QFKSQPAPDHLRAL 144 (151)
T ss_dssp ECSCCCTTSCEEEEEEEEEECSSEEEEEEEEE----ETTEEEEEEEEEEEEEEGG-----GTEEECCCHHHHHH
T ss_pred ECCCCcCCCEEEEEEEEEEeCCcEEEEEEEEE----ECCEEEEEEEEEEEEEcCC-----CCcccCCCHHHHHH
Confidence 3567889999988776 2 122222121 1343222222334556642 12223899999988
Done!