RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4063
         (205 letters)



>d1whia_ b.39.1.1 (A:) Ribosomal protein L14 {Bacillus
           stearothermophilus [TaxId: 1422]}
          Length = 122

 Score = 71.7 bits (176), Expect = 5e-17
 Identities = 31/114 (27%), Positives = 45/114 (39%), Gaps = 23/114 (20%)

Query: 35  IKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHI--GTIGDKVLVAI-----KGEKK 87
           I+  +RL+V DN   G       +   VI +   +      IGD V+  +      G  K
Sbjct: 2   IQQESRLKVADNS--G------AREVLVIKVLGGSGRRYANIGDVVVATVKDATPGGVVK 53

Query: 88  KGIIVGV--------KKHQKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLR 133
           KG +V           +       + D N  V+I D  +P GTRI  P+   LR
Sbjct: 54  KGQVVKAVVVRTKRGVRRPDGSYIRFDENACVIIRDDKSPRGTRIFGPVARELR 107


>d2j01o1 b.39.1.1 (O:1-122) Ribosomal protein L14 {Thermus
           thermophilus [TaxId: 274]}
          Length = 122

 Score = 68.6 bits (168), Expect = 8e-16
 Identities = 27/114 (23%), Positives = 46/114 (40%), Gaps = 23/114 (20%)

Query: 35  IKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIY--NQTHIGTIGDKVLVAI---------- 82
           I+  T L V DN           +    I +   +     T+GD ++ ++          
Sbjct: 2   IQPQTYLEVADNTG--------ARKIMCIRVLKGSNAKYATVGDVIVASVKEAIPRGAVK 53

Query: 83  KGEKKKGIIVGVKKHQKPH---IPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLR 133
           +G+  K ++V  KK  K       + D N  V+I++   P GTR+  P+   LR
Sbjct: 54  EGDVVKAVVVRTKKEIKRPDGSAIRFDDNAAVIINNQLEPRGTRVFGPVARELR 107


>d1vqok1 b.39.1.1 (K:1-132) Ribosomal protein L14 {Archaeon
           Haloarcula marismortui [TaxId: 2238]}
          Length = 132

 Score = 63.6 bits (155), Expect = 6e-14
 Identities = 20/115 (17%), Positives = 47/115 (40%), Gaps = 24/115 (20%)

Query: 35  IKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIY------NQTHIGTIGDKVLVAIK----- 83
           ++  + +   DN           +  +VI+++      N+     +GDK+ V++      
Sbjct: 12  LEKGSLITCADNTG--------ARELKVISVHGYSGTKNRLPKAGLGDKITVSVTKGTPE 63

Query: 84  --GEKKKGIIVGVKKHQKPH---IPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLR 133
              +  + ++V  +K  +       K + N  V++D++  P GT +  PI   + 
Sbjct: 64  MRRQVLEAVVVRQRKPIRRPDGTRVKFEDNAAVIVDENEDPRGTELKGPIAREVA 118


>d2gyci1 b.39.1.1 (I:2-122) Ribosomal protein L14 {Escherichia coli
           [TaxId: 562]}
          Length = 121

 Score = 54.0 bits (130), Expect = 2e-10
 Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 24/115 (20%)

Query: 35  IKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHI--GTIGDKVLVAI---------- 82
           I+  T L V DN   G       +    I +   +H     +GD + + I          
Sbjct: 1   IQEQTMLNVADNS--G------ARRVMCIKVLGGSHRRYAGVGDIIKITIKEAIPRGKVK 52

Query: 83  KGEKKKGIIVGVKKHQKPH---IPKTDTNNVVLIDDSG-TPLGTRIHVPIPSMLR 133
           KG+  K ++V  KK  +     + + D N  VL++++   P+GTRI  P+   LR
Sbjct: 53  KGDVLKAVVVRTKKGVRRPDGSVIRFDGNACVLLNNNSEQPIGTRIFGPVTRELR 107


>d2ix0a2 b.40.4.5 (A:4-82) Exoribonuclease 2, RNB {Escherichia
          coli [TaxId: 562]}
          Length = 79

 Score = 25.4 bits (56), Expect = 1.8
 Identities = 5/22 (22%), Positives = 11/22 (50%), Gaps = 2/22 (9%)

Query: 75 GDKVLVAIKGEKKK--GIIVGV 94
          GD+++  I  EK++       +
Sbjct: 54 GDRIIAVIHSEKERESAEPEEL 75


>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase
           {Plasmodium falciparum [TaxId: 5833]}
          Length = 259

 Score = 25.8 bits (55), Expect = 4.3
 Identities = 12/94 (12%), Positives = 27/94 (28%), Gaps = 4/94 (4%)

Query: 30  PCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLVAIKGEKKKG 89
           P               N E     +   +  R        +I  +GD  +V    E +  
Sbjct: 152 PVGRSPDTENLKLEKLNVETNNNYIVVDENQRTSVN----NIYAVGDCCMVKKSKEIEDL 207

Query: 90  IIVGVKKHQKPHIPKTDTNNVVLIDDSGTPLGTR 123
            ++ +   ++    K +    +  +   TP+   
Sbjct: 208 NLLKLYNEERYLNKKENVTEDIFYNVQLTPVAIN 241


>d1u2wa1 a.4.5.5 (A:12-119) Cadmium efflux system accessory
          protein CadC {Staphylococcus aureus [TaxId: 1280]}
          Length = 108

 Score = 24.0 bits (52), Expect = 8.3
 Identities = 10/49 (20%), Positives = 20/49 (40%), Gaps = 1/49 (2%)

Query: 21 LCSDLYHTTPCL-HHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQ 68
          + + L  T     HH++ L +  VV+  + G+ A+       +  I   
Sbjct: 51 IANILGVTIANASHHLRTLYKQGVVNFRKEGKLALYSLGDEHIRQIMMI 99


>g1ko6.1 b.119.1.1 (A:,B:) C-terminal autoproteolytic domain of
          nucleoporin nup98 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 158

 Score = 24.4 bits (53), Expect = 8.5
 Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 3/40 (7%)

Query: 16 PSALKLCSDLYHTTPCLHHIKLLTR---LRVVDNCEIGRQ 52
          P+ + L    Y+T P +  +  +T      +V +  IGR+
Sbjct: 3  PAGIILTKVGYYTIPSMDDLAKITNEKGECIVSDFTIGRK 42


>d1r1ta_ a.4.5.5 (A:) SmtB repressor {Cyanobacteria
          (Synechococcus), pcc7942 [TaxId: 1129]}
          Length = 98

 Score = 23.9 bits (52), Expect = 9.3
 Identities = 9/36 (25%), Positives = 18/36 (50%)

Query: 33 HHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQ 68
          H ++ L  LR+V   + GR    + +   ++A+Y  
Sbjct: 55 HQLRSLRNLRLVSYRKQGRHVYYQLQDHHIVALYQN 90


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.133    0.395 

Gapped
Lambda     K      H
   0.267   0.0643    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 756,094
Number of extensions: 33249
Number of successful extensions: 91
Number of sequences better than 10.0: 1
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 12
Length of query: 205
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 124
Effective length of database: 1,295,466
Effective search space: 160637784
Effective search space used: 160637784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.6 bits)