BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy4064
         (624 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q90X38|GPKOW_DANRE G patch domain and KOW motifs-containing protein OS=Danio rerio
           GN=gpkow PE=2 SV=2
          Length = 506

 Score = 85.1 bits (209), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/103 (44%), Positives = 62/103 (60%), Gaps = 11/103 (10%)

Query: 5   LRPKGLGLGADKSAT---QITTSKSNTNP------EEAKLV--KNCCVKITGGMFKNNYG 53
           LRPKGLGLGAD+SA    +    K    P      EE  LV     CV++  G  K+ YG
Sbjct: 210 LRPKGLGLGADRSAIKDLEPGVPKRPPKPGDEKGKEEEALVLGPGGCVQVLAGAHKDLYG 269

Query: 54  KLESFNEDSGRVVVKLALGDEHVTVVESLLLRVTQSEYDKNSR 96
           K+E  + D+GRVVVKLA+G + VT+++  +  VT+ EYDK S+
Sbjct: 270 KIEGVDPDNGRVVVKLAIGGKTVTIIQHSIKLVTRKEYDKYSK 312


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.299    0.115    0.300 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 218,920,047
Number of Sequences: 539616
Number of extensions: 9405736
Number of successful extensions: 244489
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 2631
Number of HSP's successfully gapped in prelim test: 5219
Number of HSP's that attempted gapping in prelim test: 75575
Number of HSP's gapped (non-prelim): 67897
length of query: 624
length of database: 191,569,459
effective HSP length: 124
effective length of query: 500
effective length of database: 124,657,075
effective search space: 62328537500
effective search space used: 62328537500
T: 11
A: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.7 bits)
S2: 64 (29.3 bits)