Query psy4064
Match_columns 624
No_of_seqs 70 out of 72
Neff 1.8
Searched_HMMs 29240
Date Sat Aug 17 00:24:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4064.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4064hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nz9_A Transcription antitermi 97.8 3.4E-05 1.2E-09 58.3 5.3 47 33-79 3-49 (58)
2 3p8b_B Transcription antitermi 97.2 0.00034 1.1E-08 60.9 5.0 59 32-90 89-149 (152)
3 2e6z_A Transcription elongatio 97.1 0.00033 1.1E-08 54.2 3.4 40 33-74 6-45 (59)
4 2jvv_A Transcription antitermi 97.0 0.00086 2.9E-08 59.5 5.8 47 33-79 126-172 (181)
5 2ckk_A KIN17; beta barrel, rib 96.9 0.00093 3.2E-08 58.7 5.0 43 35-77 71-116 (127)
6 2xhc_A Transcription antitermi 96.5 0.0037 1.3E-07 62.5 7.0 47 33-79 297-343 (352)
7 1m1h_A Transcription antitermi 96.0 0.00084 2.9E-08 64.3 -0.7 48 32-79 192-239 (248)
8 1vq8_T 50S ribosomal protein L 95.3 0.01 3.6E-07 52.5 3.5 38 33-70 41-78 (120)
9 3j21_U 50S ribosomal protein L 94.9 0.016 5.5E-07 51.3 3.5 36 33-68 44-79 (121)
10 2e70_A Transcription elongatio 94.8 0.035 1.2E-06 45.7 5.0 48 37-86 20-67 (71)
11 2zkr_t 60S ribosomal protein L 94.8 0.021 7.2E-07 52.0 3.9 37 33-69 47-84 (145)
12 2zjr_R 50S ribosomal protein L 94.5 0.02 6.9E-07 50.0 3.0 36 33-68 14-49 (115)
13 3v2d_Y 50S ribosomal protein L 94.3 0.024 8.2E-07 49.4 3.0 36 33-68 5-40 (110)
14 3iz5_Y 60S ribosomal protein L 94.1 0.033 1.1E-06 51.2 3.7 36 33-68 47-82 (150)
15 3u5e_Y L33, YL33, 60S ribosoma 94.1 0.028 9.6E-07 50.3 3.1 36 33-68 48-83 (127)
16 3r8s_U 50S ribosomal protein L 93.8 0.042 1.4E-06 47.3 3.6 34 34-68 3-36 (102)
17 4a17_S RPL26, 60S ribosomal pr 93.7 0.041 1.4E-06 49.8 3.5 36 33-68 47-82 (135)
18 2ftc_N Mitochondrial ribosomal 91.8 0.13 4.4E-06 43.8 3.8 31 38-68 1-31 (96)
19 3bbo_W Ribosomal protein L24; 91.5 0.054 1.8E-06 51.4 1.3 34 35-68 69-102 (191)
20 2do3_A Transcription elongatio 91.4 0.29 9.8E-06 40.2 5.3 50 34-85 17-66 (69)
21 2oug_A Transcriptional activat 88.5 0.0019 6.3E-08 56.0 -10.5 43 33-76 108-150 (162)
22 3iz5_N 60S ribosomal protein L 81.9 0.84 2.9E-05 41.2 3.1 50 35-85 7-57 (134)
23 3izc_N 60S ribosomal protein R 80.1 0.98 3.3E-05 41.0 2.9 51 34-85 14-67 (138)
24 3j20_E 30S ribosomal protein S 73.7 3.4 0.00012 40.3 4.8 52 33-84 177-232 (243)
25 3j21_5 50S ribosomal protein L 72.9 2.1 7.2E-05 35.5 2.8 33 34-67 3-35 (83)
26 2joy_A 50S ribosomal protein L 67.3 2.9 0.0001 35.1 2.5 32 35-67 4-35 (96)
27 4a4f_A SurviVal of motor neuro 66.5 11 0.00037 28.9 5.4 56 33-88 7-63 (64)
28 3u5c_E RP5, S7, YS6, 40S ribos 65.8 5.8 0.0002 39.1 4.6 51 33-83 173-226 (261)
29 3iz6_D 40S ribosomal protein S 65.1 5.7 0.00019 39.2 4.4 52 33-84 173-227 (265)
30 4a18_F RPL14; ribosome, eukary 63.3 4.9 0.00017 36.0 3.3 32 35-67 7-38 (126)
31 2xzm_W 40S ribosomal protein S 62.8 8 0.00027 38.1 4.9 55 33-88 175-232 (260)
32 3kbg_A 30S ribosomal protein S 58.0 10 0.00034 36.4 4.6 49 33-83 137-187 (213)
33 1mhn_A SurviVal motor neuron p 56.1 15 0.00052 27.6 4.5 55 34-88 3-58 (59)
34 3s6w_A Tudor domain-containing 55.8 17 0.00059 26.7 4.6 52 35-86 2-54 (54)
35 3pnw_C Tudor domain-containing 54.8 18 0.00061 29.0 4.9 58 34-91 17-75 (77)
36 1g5v_A SurviVal motor neuron p 53.0 20 0.00068 29.8 5.1 56 34-89 10-66 (88)
37 2equ_A PHD finger protein 20-l 50.9 21 0.00073 28.8 4.8 55 33-89 8-62 (74)
38 2ckk_A KIN17; beta barrel, rib 48.6 24 0.00082 30.8 5.1 59 31-90 11-73 (127)
39 2d9t_A Tudor domain-containing 45.4 39 0.0013 26.9 5.5 56 34-89 9-65 (78)
40 3u1u_A RNA polymerase-associat 44.3 7.7 0.00026 33.8 1.3 66 34-99 35-115 (137)
41 2bze_A KIAA0252 protein; human 42.7 9.4 0.00032 34.1 1.7 65 34-98 49-128 (153)
42 2eqk_A Tudor domain-containing 40.0 47 0.0016 28.1 5.4 57 31-89 18-76 (85)
43 2eqj_A Metal-response element- 35.3 44 0.0015 27.4 4.3 43 30-72 9-51 (66)
44 4a18_N RPL27, ribosomal protei 34.4 30 0.001 31.7 3.6 36 34-69 4-45 (144)
45 3rux_A BIRA bifunctional prote 32.6 35 0.0012 32.3 4.0 43 34-79 220-262 (270)
46 3mea_A SAGA-associated factor 32.1 94 0.0032 29.0 6.6 50 51-100 65-126 (180)
47 3p8d_A Medulloblastoma antigen 26.5 1.2E+02 0.0042 24.4 5.5 54 34-89 6-59 (67)
48 4av2_M PILP protein, type IV p 26.1 53 0.0018 30.2 3.8 48 38-86 115-163 (181)
49 2eay_A Biotin [acetyl-COA-carb 25.9 23 0.00079 32.6 1.4 36 35-73 185-220 (233)
50 3qii_A PHD finger protein 20; 24.3 1.3E+02 0.0043 25.5 5.4 58 31-90 18-75 (85)
51 2wac_A CG7008-PA; unknown func 22.7 1.5E+02 0.005 25.8 5.8 56 34-92 51-107 (218)
52 1bia_A BIRA bifunctional prote 21.3 39 0.0013 32.2 2.0 36 35-72 270-305 (321)
53 3bfm_A Biotin protein ligase-l 21.2 37 0.0013 31.0 1.8 32 35-72 191-222 (235)
54 2dxu_A Biotin--[acetyl-COA-car 20.9 43 0.0015 31.0 2.1 36 33-72 185-220 (235)
No 1
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=97.75 E-value=3.4e-05 Score=58.31 Aligned_cols=47 Identities=19% Similarity=0.315 Sum_probs=43.4
Q ss_pred cceeeCceEEEeccCCCCcccceeeecCCCceEEEEEeeCCeeEEEe
Q psy4064 33 AKLVKNCCVKITGGMFKNNYGKLESFNEDSGRVVVKLALGDEHVTVV 79 (624)
Q Consensus 33 LgLkKGAfVkIVSGPHKGLYGKVEGLDpDNgRVMVRLAIGGevVTVS 79 (624)
..+.+|..|.|++||++|+-|.|+.+|+++.||+|.+.+=|+.++|.
T Consensus 3 ~~~~~Gd~V~V~~Gpf~g~~g~v~~v~~~k~~v~V~v~~~Gr~t~v~ 49 (58)
T 1nz9_A 3 VAFREGDQVRVVSGPFADFTGTVTEINPERGKVKVMVTIFGRETPVE 49 (58)
T ss_dssp CSCCTTCEEEECSGGGTTCEEEEEEEETTTTEEEEEEESSSSEEEEE
T ss_pred cccCCCCEEEEeecCCCCcEEEEEEEcCCCCEEEEEEEeCCCEEEEE
Confidence 45778999999999999999999999999999999999999887775
No 2
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=97.19 E-value=0.00034 Score=60.89 Aligned_cols=59 Identities=20% Similarity=0.231 Sum_probs=51.1
Q ss_pred ccceeeCceEEEeccCCCCcccceeeecCCCceEEEEEeeCCee--EEEeeceeEecChHH
Q psy4064 32 EAKLVKNCCVKITGGMFKNNYGKLESFNEDSGRVVVKLALGDEH--VTVVESLLLRVTQSE 90 (624)
Q Consensus 32 eLgLkKGAfVkIVSGPHKGLYGKVEGLDpDNgRVMVRLAIGGev--VTVSEyaVRpVSkKE 90 (624)
...+.+|..|.|++|||+|.=|.|+.+|++..+|.|.+.+-|+. |+|.-.-|+++.+.+
T Consensus 89 ~~~~~~Gd~VrI~~Gpf~g~~g~V~~vd~~k~~v~V~v~~~gr~tpvel~~~~v~~i~~~~ 149 (152)
T 3p8b_B 89 VSGLEPGDLVEVIAGPFKGQKAKVVKIDESKDEVVVQFIDAIVPIPVTIKGDYVRLISKLQ 149 (152)
T ss_dssp TTTCCTTCEEEECSSTTTTCEEEEEEEETTTTEEEEEESSCSSCCEEEEEGGGEEEEECC-
T ss_pred cccCCCCCEEEEeeecCCCCEEEEEEEeCCCCEEEEEEEecceeEEEEECHHHEEEecccc
Confidence 35788999999999999999999999999999999999999984 777777777776544
No 3
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.08 E-value=0.00033 Score=54.21 Aligned_cols=40 Identities=18% Similarity=0.210 Sum_probs=34.8
Q ss_pred cceeeCceEEEeccCCCCcccceeeecCCCceEEEEEeeCCe
Q psy4064 33 AKLVKNCCVKITGGMFKNNYGKLESFNEDSGRVVVKLALGDE 74 (624)
Q Consensus 33 LgLkKGAfVkIVSGPHKGLYGKVEGLDpDNgRVMVRLAIGGe 74 (624)
..+.+|..|.|+.||++|+-|.|+.+|++ +|+|.+.+.+.
T Consensus 6 ~~f~~GD~V~V~~Gpf~g~~G~V~evd~e--~v~V~v~~fg~ 45 (59)
T 2e6z_A 6 SGFQPGDNVEVCEGELINLQGKILSVDGN--KITIMPKHEDL 45 (59)
T ss_dssp SSCCTTSEEEECSSTTTTCEEEECCCBTT--EEEEEECCSSC
T ss_pred ccCCCCCEEEEeecCCCCCEEEEEEEeCC--EEEEEEEecCC
Confidence 45789999999999999999999999986 88888865553
No 4
>2jvv_A Transcription antitermination protein NUSG; transcription factor, transcription regulation, transcription termination; NMR {Escherichia coli} PDB: 2k06_A 2kvq_G
Probab=97.00 E-value=0.00086 Score=59.53 Aligned_cols=47 Identities=17% Similarity=0.258 Sum_probs=44.0
Q ss_pred cceeeCceEEEeccCCCCcccceeeecCCCceEEEEEeeCCeeEEEe
Q psy4064 33 AKLVKNCCVKITGGMFKNNYGKLESFNEDSGRVVVKLALGDEHVTVV 79 (624)
Q Consensus 33 LgLkKGAfVkIVSGPHKGLYGKVEGLDpDNgRVMVRLAIGGevVTVS 79 (624)
..+.+|..|.|++||+.|+=|.|+.+|++..||.|.|-|=|+.++|.
T Consensus 126 ~~~~~Gd~V~V~~GPf~g~~G~v~~v~~~k~r~~V~v~ifgr~t~ve 172 (181)
T 2jvv_A 126 TLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVE 172 (181)
T ss_dssp CCCCTTEEEEECSSTTTTEEEEEEEEETTTTEEEEEEEETTEEEEEE
T ss_pred ccCCCCCEEEEeccCCCCcEEEEEEEeCCCCEEEEEEEECCCCEEEE
Confidence 46789999999999999999999999999999999999999988874
No 5
>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear protein; 1.45A {Homo sapiens}
Probab=96.89 E-value=0.00093 Score=58.66 Aligned_cols=43 Identities=23% Similarity=0.340 Sum_probs=38.3
Q ss_pred eeeCceEEEeccCCCCcccceeeecCCCceEEEEEeeC---CeeEE
Q psy4064 35 LVKNCCVKITGGMFKNNYGKLESFNEDSGRVVVKLALG---DEHVT 77 (624)
Q Consensus 35 LkKGAfVkIVSGPHKGLYGKVEGLDpDNgRVMVRLAIG---GevVT 77 (624)
..+|..|+|+.|+|+|..|++.++|.+...++|+|.-| ++.|.
T Consensus 71 P~~g~~V~Iv~G~~rG~~g~L~~id~~~~~~~V~l~~~~~~~~~v~ 116 (127)
T 2ckk_A 71 PAPGKRILVLNGGYRGNEGTLESINEKTFSATIVIETGPLKGRRVE 116 (127)
T ss_dssp CCTTCEEEECSSTTTTCEEEEEEEEGGGTEEEEEECSSTTTTCEEE
T ss_pred CCCCCEEEEEecccCCcEEEEEEEeCCCcEEEEEEccCCCCCCEEE
Confidence 35599999999999999999999999999999999876 65664
No 6
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=96.54 E-value=0.0037 Score=62.48 Aligned_cols=47 Identities=19% Similarity=0.272 Sum_probs=43.8
Q ss_pred cceeeCceEEEeccCCCCcccceeeecCCCceEEEEEeeCCeeEEEe
Q psy4064 33 AKLVKNCCVKITGGMFKNNYGKLESFNEDSGRVVVKLALGDEHVTVV 79 (624)
Q Consensus 33 LgLkKGAfVkIVSGPHKGLYGKVEGLDpDNgRVMVRLAIGGevVTVS 79 (624)
..+.+|..|.|++||+.|+=|.|+.+|++..||+|.|-|=|+.++|.
T Consensus 297 ~~f~~Gd~VrV~~GPF~G~~G~V~evd~ek~rv~V~V~ifGR~tpVe 343 (352)
T 2xhc_A 297 LGFKVGDMVKIISGPFEDFAGVIKEIDPERQELKVNVTIFGRETPVV 343 (352)
T ss_dssp CCCCTTCEEEECSSTTTTCEEEEEEEETTTTEEEEEEEETTEEEEEE
T ss_pred ccCCCCCEEEEeccCCCCcEEEEEEEcCCCCEEEEEEEECCCcEEEE
Confidence 46789999999999999999999999999999999999999987775
No 7
>1m1h_A Transcription antitermination protein NUSG; transcription termination, RNP motif, immunoglobulin fold, nucleic acid interaction; 1.95A {Aquifex aeolicus} SCOP: b.114.1.1 d.58.42.1 PDB: 1m1g_A 1npp_A 1npr_A
Probab=96.02 E-value=0.00084 Score=64.30 Aligned_cols=48 Identities=19% Similarity=0.284 Sum_probs=0.0
Q ss_pred ccceeeCceEEEeccCCCCcccceeeecCCCceEEEEEeeCCeeEEEe
Q psy4064 32 EAKLVKNCCVKITGGMFKNNYGKLESFNEDSGRVVVKLALGDEHVTVV 79 (624)
Q Consensus 32 eLgLkKGAfVkIVSGPHKGLYGKVEGLDpDNgRVMVRLAIGGevVTVS 79 (624)
.+.+.+|..|.|++||+.|.=|.|+.+|++..+|.|.+.|=|+.++|.
T Consensus 192 ~~~~~~Gd~V~I~~Gpf~g~~G~v~ev~~~k~~~~V~v~ifgr~tpv~ 239 (248)
T 1m1h_A 192 KVEFEKGDQVRVIEGPFMNFTGTVEEVHPEKRKLTVMISIFGRMTPVE 239 (248)
T ss_dssp ------------------------------------------------
T ss_pred cccCCCCCEEEEeccCCCCcEEEEEEEeCCCCEEEEEEEeCCCcEEEE
Confidence 568889999999999999999999999999999999999999887664
No 8
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...
Probab=95.32 E-value=0.01 Score=52.46 Aligned_cols=38 Identities=16% Similarity=0.224 Sum_probs=35.4
Q ss_pred cceeeCceEEEeccCCCCcccceeeecCCCceEEEEEe
Q psy4064 33 AKLVKNCCVKITGGMFKNNYGKLESFNEDSGRVVVKLA 70 (624)
Q Consensus 33 LgLkKGAfVkIVSGPHKGLYGKVEGLDpDNgRVMVRLA 70 (624)
+.|.+|.-|+|++|+++|.=|+|..+|+...+|+|...
T Consensus 41 ~~IkkGD~V~Vi~G~dKGk~GkV~~V~~k~~~V~VEgv 78 (120)
T 1vq8_T 41 VRVNAGDTVEVLRGDFAGEEGEVINVDLDKAVIHVEDV 78 (120)
T ss_dssp EECCTTCEEEECSSTTTTCEEEEEEEETTTTEEEETTC
T ss_pred ccccCCCEEEEEecCCCCCEEEEEEEECCCCEEEEeCe
Confidence 67889999999999999999999999999999998654
No 9
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=94.92 E-value=0.016 Score=51.29 Aligned_cols=36 Identities=22% Similarity=0.252 Sum_probs=34.0
Q ss_pred cceeeCceEEEeccCCCCcccceeeecCCCceEEEE
Q psy4064 33 AKLVKNCCVKITGGMFKNNYGKLESFNEDSGRVVVK 68 (624)
Q Consensus 33 LgLkKGAfVkIVSGPHKGLYGKVEGLDpDNgRVMVR 68 (624)
+.|.+|.-|+|++|+++|.-|+|..+++...+|+|.
T Consensus 44 ~~IkkGD~V~Vi~GkdKGk~GkV~~V~~k~~~V~VE 79 (121)
T 3j21_U 44 LPVRVGDKVRIMRGDYKGHEGKVVEVDLKRYRIYVE 79 (121)
T ss_dssp EECCSSSEEEECSSSCSSEEEEEEEEETTTTEEEET
T ss_pred cccccCCEEEEeecCCCCcEeEEEEEEecCCEEEEe
Confidence 678899999999999999999999999999999985
No 10
>2e70_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.79 E-value=0.035 Score=45.65 Aligned_cols=48 Identities=25% Similarity=0.324 Sum_probs=40.5
Q ss_pred eCceEEEeccCCCCcccceeeecCCCceEEEEEeeCCeeEEEeeceeEec
Q psy4064 37 KNCCVKITGGMFKNNYGKLESFNEDSGRVVVKLALGDEHVTVVESLLLRV 86 (624)
Q Consensus 37 KGAfVkIVSGPHKGLYGKVEGLDpDNgRVMVRLAIGGevVTVSEyaVRpV 86 (624)
.|-.|.|..|||+|+.|.|.-..+..+|| .|--.+++|||.--.|.+|
T Consensus 20 iGktV~I~kGpyKG~~GiVkd~t~~~~RV--ELhs~~K~VtV~r~~l~~~ 67 (71)
T 2e70_A 20 IGQTVRISQGPYKGYIGVVKDATESTARV--ELHSTCQTISVDRQRLTTV 67 (71)
T ss_dssp TTSEEEECSSTTTTCEEEEEEECSSCEEE--EESSSCCEEEECTTTEEEC
T ss_pred CCCEEEEeccCCCCeEEEEEECCCCeEEE--EecCCceEEEEEhhhcccc
Confidence 68999999999999999999998777665 5888889999987666544
No 11
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=94.75 E-value=0.021 Score=51.96 Aligned_cols=37 Identities=16% Similarity=0.239 Sum_probs=34.4
Q ss_pred cceeeCceEEEeccCCCCcc-cceeeecCCCceEEEEE
Q psy4064 33 AKLVKNCCVKITGGMFKNNY-GKLESFNEDSGRVVVKL 69 (624)
Q Consensus 33 LgLkKGAfVkIVSGPHKGLY-GKVEGLDpDNgRVMVRL 69 (624)
+.|.+|.-|+|++|+++|.= |+|..+|+...+|+|.-
T Consensus 47 ~~IkkGD~V~Vi~GkdKGk~~GkV~~V~~k~~~V~VEg 84 (145)
T 2zkr_t 47 MPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIER 84 (145)
T ss_dssp CBCCTTCEEEECSSTTTTCCSEEEEEEETTTTEEEETT
T ss_pred cccCCCCEEEEeecCCCCcceeEEEEEECCCCEEEEee
Confidence 67899999999999999998 99999999999999853
No 12
>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V
Probab=94.47 E-value=0.02 Score=50.00 Aligned_cols=36 Identities=25% Similarity=0.231 Sum_probs=34.2
Q ss_pred cceeeCceEEEeccCCCCcccceeeecCCCceEEEE
Q psy4064 33 AKLVKNCCVKITGGMFKNNYGKLESFNEDSGRVVVK 68 (624)
Q Consensus 33 LgLkKGAfVkIVSGPHKGLYGKVEGLDpDNgRVMVR 68 (624)
+.|.+|..|+|++|+++|.=|+|..+|+...+|+|.
T Consensus 14 m~IkkGD~V~Vi~GkdKGk~GkV~~V~~~~~~V~VE 49 (115)
T 2zjr_R 14 LHFKKGDTVIVLSGKHKGQTGKVLLALPRDQKVVVE 49 (115)
T ss_dssp CSSCTTSEEECCSSSSTTCEEEEEEEETTTTEEEES
T ss_pred CcccCCCEEEEeEcCCCCcEEEEEEEECCCCEEEEe
Confidence 579999999999999999999999999999999986
No 13
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...
Probab=94.28 E-value=0.024 Score=49.42 Aligned_cols=36 Identities=22% Similarity=0.326 Sum_probs=33.8
Q ss_pred cceeeCceEEEeccCCCCcccceeeecCCCceEEEE
Q psy4064 33 AKLVKNCCVKITGGMFKNNYGKLESFNEDSGRVVVK 68 (624)
Q Consensus 33 LgLkKGAfVkIVSGPHKGLYGKVEGLDpDNgRVMVR 68 (624)
+.|++|.-|+|++|+++|.=|+|..++++..+|+|.
T Consensus 5 ~~IkkGD~V~Vi~GkdKGk~GkV~~V~~~~~~ViVE 40 (110)
T 3v2d_Y 5 MHVKKGDTVLVASGKYKGRVGKVKEVLPKKYAVIVE 40 (110)
T ss_dssp CSCCTTSEEEECSSTTTTCEEEEEEEEGGGTEEEET
T ss_pred cccCCCCEEEEeEcCCCCeEeEEEEEECCCCEEEEe
Confidence 568899999999999999999999999999999984
No 14
>3iz5_Y 60S ribosomal protein L26 (L24P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Y
Probab=94.08 E-value=0.033 Score=51.17 Aligned_cols=36 Identities=19% Similarity=0.236 Sum_probs=33.8
Q ss_pred cceeeCceEEEeccCCCCcccceeeecCCCceEEEE
Q psy4064 33 AKLVKNCCVKITGGMFKNNYGKLESFNEDSGRVVVK 68 (624)
Q Consensus 33 LgLkKGAfVkIVSGPHKGLYGKVEGLDpDNgRVMVR 68 (624)
+.|++|.-|+|++|.++|.-|+|..+++...+|+|.
T Consensus 47 ~~IkKGD~V~Vi~GkdKGk~GkVl~V~~kk~~V~VE 82 (150)
T 3iz5_Y 47 IPIRKDDEVQVVRGSYKGREGKVVQVYRRRWVIHVE 82 (150)
T ss_dssp EECCSSSEEEECSSTTTTCEEEEEEEETTTTEEEET
T ss_pred cccCCCCEEEEeecCCCCccceEEEEEcCCCEEEEe
Confidence 678899999999999999999999999999999873
No 15
>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 4b6a_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U
Probab=94.06 E-value=0.028 Score=50.31 Aligned_cols=36 Identities=22% Similarity=0.139 Sum_probs=33.8
Q ss_pred cceeeCceEEEeccCCCCcccceeeecCCCceEEEE
Q psy4064 33 AKLVKNCCVKITGGMFKNNYGKLESFNEDSGRVVVK 68 (624)
Q Consensus 33 LgLkKGAfVkIVSGPHKGLYGKVEGLDpDNgRVMVR 68 (624)
+-|++|.-|+|++|.++|.-|+|..+++...+|+|.
T Consensus 48 ~~IkkgD~V~Vi~GkdKGk~GkV~~V~~kk~~V~VE 83 (127)
T 3u5e_Y 48 LPIRRDDEVLVVRGSKKGQEGKISSVYRLKFAVQVD 83 (127)
T ss_dssp EECCTTCEEEECSSTTTTCEEEEEEEEGGGTEEEEE
T ss_pred ccccCCCEEEEeecCCCCccceEEEEECCCCEEEEe
Confidence 578899999999999999999999999999999985
No 16
>3r8s_U 50S ribosomal protein L24; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2j28_U* 3fik_U 3j19_U 2wwq_U 3oat_U* 3oas_U* 3ofd_U 3ofc_U 3ofr_U* 3ofz_U* 3og0_U 3ofq_U 3r8t_U 3i1n_U 1vs8_U 1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U ...
Probab=93.80 E-value=0.042 Score=47.29 Aligned_cols=34 Identities=26% Similarity=0.392 Sum_probs=31.8
Q ss_pred ceeeCceEEEeccCCCCcccceeeecCCCceEEEE
Q psy4064 34 KLVKNCCVKITGGMFKNNYGKLESFNEDSGRVVVK 68 (624)
Q Consensus 34 gLkKGAfVkIVSGPHKGLYGKVEGLDpDNgRVMVR 68 (624)
.|++|.-|+|++|+++|.-|+|..++++ .+|+|.
T Consensus 3 ~IkkGD~V~Vi~GkdKGk~GkV~~V~~~-~~ViVe 36 (102)
T 3r8s_U 3 KIRRDDEVIVLTGKDKGKRGKVKNVLSS-GKVIVE 36 (102)
T ss_dssp SSCSSCEEEECSSSSTTCEEEEEEEETT-TEEEET
T ss_pred CccCCCEEEEeEcCCCCeeeEEEEEEeC-CEEEEe
Confidence 4789999999999999999999999999 999885
No 17
>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_S 4a1c_S 4a1e_S
Probab=93.71 E-value=0.041 Score=49.78 Aligned_cols=36 Identities=28% Similarity=0.298 Sum_probs=33.5
Q ss_pred cceeeCceEEEeccCCCCcccceeeecCCCceEEEE
Q psy4064 33 AKLVKNCCVKITGGMFKNNYGKLESFNEDSGRVVVK 68 (624)
Q Consensus 33 LgLkKGAfVkIVSGPHKGLYGKVEGLDpDNgRVMVR 68 (624)
+-|.+|.-|+|++|.++|.-|+|..+++...+|+|.
T Consensus 47 ~~IkkgD~V~Vi~GkdKGk~GkV~~V~~kk~~V~VE 82 (135)
T 4a17_S 47 MPVRKDDEVLIVRGKFKGNKGKVTQVYRKKWAIHVE 82 (135)
T ss_dssp EECCTTCEEEECSSTTTTCEEEEEEEETTTTEEEET
T ss_pred ccccCCCEEEEeecCCCCceeeEEEEEcCCCEEEEe
Confidence 568899999999999999999999999999999873
No 18
>2ftc_N Mitochondrial ribosomal protein L24; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_N
Probab=91.84 E-value=0.13 Score=43.82 Aligned_cols=31 Identities=26% Similarity=0.208 Sum_probs=29.2
Q ss_pred CceEEEeccCCCCcccceeeecCCCceEEEE
Q psy4064 38 NCCVKITGGMFKNNYGKLESFNEDSGRVVVK 68 (624)
Q Consensus 38 GAfVkIVSGPHKGLYGKVEGLDpDNgRVMVR 68 (624)
|.-|+|++|+++|.=|+|..+++...+|+|.
T Consensus 1 GD~V~Vi~GkdKGk~GkV~~V~~~~~~ViVe 31 (96)
T 2ftc_N 1 GDTVEILEGKDAGKQGKVVQVIRQRNWVVVG 31 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEECCCCEEEEe
Confidence 6789999999999999999999999999984
No 19
>3bbo_W Ribosomal protein L24; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=91.54 E-value=0.054 Score=51.41 Aligned_cols=34 Identities=21% Similarity=0.355 Sum_probs=32.3
Q ss_pred eeeCceEEEeccCCCCcccceeeecCCCceEEEE
Q psy4064 35 LVKNCCVKITGGMFKNNYGKLESFNEDSGRVVVK 68 (624)
Q Consensus 35 LkKGAfVkIVSGPHKGLYGKVEGLDpDNgRVMVR 68 (624)
|++|.-|+|++|+++|.=|+|..++++..+|+|.
T Consensus 69 IkKGD~V~VIaGkDKGK~GkVl~V~~k~~rViVE 102 (191)
T 3bbo_W 69 VKVGDTVKVISGGEKGKIGEISKIHKHNSTVIIK 102 (191)
T ss_dssp SCCSSCEEECSSSSTTCCCSCCCCCSSSCCCCCS
T ss_pred eecCCEEEEeecCCCCceEEEEEEECCCCEEEEe
Confidence 7899999999999999999999999999999874
No 20
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=91.44 E-value=0.29 Score=40.17 Aligned_cols=50 Identities=20% Similarity=0.207 Sum_probs=39.9
Q ss_pred ceeeCceEEEeccCCCCcccceeeecCCCceEEEEEeeCCeeEEEeeceeEe
Q psy4064 34 KLVKNCCVKITGGMFKNNYGKLESFNEDSGRVVVKLALGDEHVTVVESLLLR 85 (624)
Q Consensus 34 gLkKGAfVkIVSGPHKGLYGKVEGLDpDNgRVMVRLAIGGevVTVSEyaVRp 85 (624)
-+.+|..|+|++|.|.|-=|.|..+|+| +|+|--=..++-|+|.-.-|+.
T Consensus 17 ~F~~GDHVkVi~G~~~getGlVV~v~~d--~v~v~SD~t~~Ei~V~~~dL~~ 66 (69)
T 2do3_A 17 YFKMGDHVKVIAGRFEGDTGLIVRVEEN--FVILFSDLTMHELKVLPRDLQL 66 (69)
T ss_dssp SCCTTCEEEESSSTTTTCEEEEEEECSS--CEEEEESSSCSEEEECTTSEEE
T ss_pred eccCCCeEEEeccEEcCceEEEEEEeCC--EEEEEeCCCCCEEEEEhHHhhh
Confidence 5889999999999999999999999866 4566555667778876655543
No 21
>2oug_A Transcriptional activator RFAH; transcription factor, virulence, transcription pausing, transcription elongation; 2.10A {Escherichia coli}
Probab=88.47 E-value=0.0019 Score=56.04 Aligned_cols=43 Identities=21% Similarity=0.208 Sum_probs=31.0
Q ss_pred cceeeCceEEEeccCCCCcccceeeecCCCceEEEEEeeCCeeE
Q psy4064 33 AKLVKNCCVKITGGMFKNNYGKLESFNEDSGRVVVKLALGDEHV 76 (624)
Q Consensus 33 LgLkKGAfVkIVSGPHKGLYGKVEGLDpDNgRVMVRLAIGGevV 76 (624)
..+.+|..|.|++||++|+=|.|+.+|++. ||+|.|.|=|+.+
T Consensus 108 ~~~~~Gd~V~V~~Gpf~g~~g~v~~v~~~k-r~~V~v~ifgr~~ 150 (162)
T 2oug_A 108 ATPYPGDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEI 150 (162)
T ss_dssp -------CTTHHHHHHHHHHHHTTCSSHHH-HHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEcccCCCCcEEEEEEECCCC-EEEEEEHHhCCce
Confidence 568899999999999999999999999886 8888776655543
No 22
>3iz5_N 60S ribosomal protein L14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_N
Probab=81.86 E-value=0.84 Score=41.18 Aligned_cols=50 Identities=8% Similarity=-0.005 Sum_probs=35.1
Q ss_pred eeeCceEEEeccCCCCcccceeeecCCCceEEEEEe-eCCeeEEEeeceeEe
Q psy4064 35 LVKNCCVKITGGMFKNNYGKLESFNEDSGRVVVKLA-LGDEHVTVVESLLLR 85 (624)
Q Consensus 35 LkKGAfVkIVSGPHKGLYGKVEGLDpDNgRVMVRLA-IGGevVTVSEyaVRp 85 (624)
|.+|..|.|..|||.|.+..|..+-++ +||+|-=- +..+.+.+...++.+
T Consensus 7 vevGRVV~i~~Gr~aGk~avIV~iiD~-~rvLVdG~~v~Rk~~n~khL~lT~ 57 (134)
T 3iz5_N 7 VEIGRVALVNYGKDYGRLVVIVDVVDQ-NRALVDAPDMVRCQINFKRLSLTD 57 (134)
T ss_dssp CCSSEEEECSCCSSSCCEEEEEEECSS-SEEEEEETTEEEEEEECTTSEEEE
T ss_pred cccCeEEEEeeCCCCCCEEEEEEEcCC-CeEEEeCCCccceeechhHeEEeC
Confidence 678999999999999999999999654 58988211 113345554444443
No 23
>3izc_N 60S ribosomal protein RPL14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_N 3o58_N 3o5h_N 3u5e_M 3u5i_M 4b6a_M
Probab=80.08 E-value=0.98 Score=40.97 Aligned_cols=51 Identities=12% Similarity=0.133 Sum_probs=36.5
Q ss_pred ceeeCceEEEeccCCCCcccceeeecCCCceEEEEEe---eCCeeEEEeeceeEe
Q psy4064 34 KLVKNCCVKITGGMFKNNYGKLESFNEDSGRVVVKLA---LGDEHVTVVESLLLR 85 (624)
Q Consensus 34 gLkKGAfVkIVSGPHKGLYGKVEGLDpDNgRVMVRLA---IGGevVTVSEyaVRp 85 (624)
-|.+|..|.|+.|||.|.+..|..+- |.+||+|-=- +..+.+.+..-.+.+
T Consensus 14 fve~GrVV~i~~Gr~aGk~avIV~ii-D~~rVLVDGp~~gV~R~~~n~khL~lT~ 67 (138)
T 3izc_N 14 LVEVGRVVLIKKGQSAGKLAAIVEII-DQKKVLIDGPKAGVPRQAINLGQVVLTP 67 (138)
T ss_dssp CSSTTEEEECCSCSSSCCEEEEEEEC-SSSEEEEECSSSSCCCEEEECSSSEEEE
T ss_pred hcccCeEEEEeeCCCCCCEEEEEEEe-cCCEEEEEcCCCCcccceechhHeEEec
Confidence 46789999999999999999999986 4568999221 113445555544444
No 24
>3j20_E 30S ribosomal protein S4E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=73.73 E-value=3.4 Score=40.28 Aligned_cols=52 Identities=17% Similarity=0.148 Sum_probs=43.2
Q ss_pred cceeeCceEEEeccCCCCcccceeeecCCC----ceEEEEEeeCCeeEEEeeceeE
Q psy4064 33 AKLVKNCCVKITGGMFKNNYGKLESFNEDS----GRVVVKLALGDEHVTVVESLLL 84 (624)
Q Consensus 33 LgLkKGAfVkIVSGPHKGLYGKVEGLDpDN----gRVMVRLAIGGevVTVSEyaVR 84 (624)
..+..|+.|.|+.|.|.|.-|+|..+.-.- ..|.|+-|-|+...|+..|++.
T Consensus 177 ikf~~G~l~mvtgG~n~GriG~I~~ie~~~gs~~~~V~v~d~~g~~F~T~~~~vfv 232 (243)
T 3j20_E 177 LPFEKGAYVFVTQGKNVARKGRIVEIKRFPMGWPDVVTIEDEEGELFDTLKEYAFV 232 (243)
T ss_dssp EECCTTCEEEECSSSSTTCEEEEEECCCCCSSSCCEEEEEESSCCCEEEETTTEEE
T ss_pred EeccCCCEEEEECCccceEEEEEEEEEEecCCCceEEEEEcCCCCEEEEEeceEEE
Confidence 566679999999999999999999997543 3477788889889999888653
No 25
>3j21_5 50S ribosomal protein L14E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=72.90 E-value=2.1 Score=35.45 Aligned_cols=33 Identities=9% Similarity=-0.005 Sum_probs=27.0
Q ss_pred ceeeCceEEEeccCCCCcccceeeecCCCceEEE
Q psy4064 34 KLVKNCCVKITGGMFKNNYGKLESFNEDSGRVVV 67 (624)
Q Consensus 34 gLkKGAfVkIVSGPHKGLYGKVEGLDpDNgRVMV 67 (624)
-+.+|..|.+..|+++|.+.-|..+-++ .+|+|
T Consensus 3 ~~~~Grvv~~~~Gr~~Gk~~vIv~iiD~-~~vlV 35 (83)
T 3j21_5 3 AIDVGRIAVVIAGRRAGQKVVVVDIIDK-NFVLV 35 (83)
T ss_dssp CCCTTEEEECSSSSSSCCCEEEEEECSS-SCEEE
T ss_pred ccccCEEEEEeecCCCCCEEEEEEEcCC-CEEEE
Confidence 3678999999999999999999996434 45665
No 26
>2joy_A 50S ribosomal protein L14E; protein solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: b.34.5.7 PDB: 2kds_A
Probab=67.26 E-value=2.9 Score=35.05 Aligned_cols=32 Identities=13% Similarity=-0.017 Sum_probs=26.3
Q ss_pred eeeCceEEEeccCCCCcccceeeecCCCceEEE
Q psy4064 35 LVKNCCVKITGGMFKNNYGKLESFNEDSGRVVV 67 (624)
Q Consensus 35 LkKGAfVkIVSGPHKGLYGKVEGLDpDNgRVMV 67 (624)
+.+|..|.+++|+|+|.+--|..+= |.++|+|
T Consensus 4 v~~GrVv~~~~Gr~~Gk~~VIv~~i-D~~~vLV 35 (96)
T 2joy_A 4 IEVGRICVKVKGREAGSKCVIVDII-DDNFVLV 35 (96)
T ss_dssp SSTTEEEECSSSSTTCCEEEEEEEC-SSSCEEE
T ss_pred cccCEEEEEeecCCCCCEEEEEEEe-CCCEEEE
Confidence 6789999999999999999888874 3445655
No 27
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=66.51 E-value=11 Score=28.94 Aligned_cols=56 Identities=11% Similarity=-0.062 Sum_probs=43.7
Q ss_pred cceeeCceEEEec-cCCCCcccceeeecCCCceEEEEEeeCCeeEEEeeceeEecCh
Q psy4064 33 AKLVKNCCVKITG-GMFKNNYGKLESFNEDSGRVVVKLALGDEHVTVVESLLLRVTQ 88 (624)
Q Consensus 33 LgLkKGAfVkIVS-GPHKGLYGKVEGLDpDNgRVMVRLAIGGevVTVSEyaVRpVSk 88 (624)
..+++|..|+..- .--+=.=++|++++++++.+.|.+.==|.+.+|.-.-|+|++.
T Consensus 7 ~~~~vGd~c~A~~s~Dg~wYrA~I~~v~~~~~~~~V~fvdYGn~e~V~~~~Lrpl~~ 63 (64)
T 4a4f_A 7 HSWKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLLNLKPVEE 63 (64)
T ss_dssp SCCCTTCEEEEECTTTSSEEEEEEEEEETTTTEEEEEETTTTEEEEEEGGGEECCSC
T ss_pred CCCCCCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEEecCCEEEEeHHHcEeCCC
Confidence 3577898888763 2212223999999999999999999888899999999999863
No 28
>3u5c_E RP5, S7, YS6, 40S ribosomal protein S4-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_D 3u5g_E
Probab=65.80 E-value=5.8 Score=39.09 Aligned_cols=51 Identities=22% Similarity=0.242 Sum_probs=42.4
Q ss_pred cceeeCceEEEeccCCCCcccceeeecCCC---ceEEEEEeeCCeeEEEeecee
Q psy4064 33 AKLVKNCCVKITGGMFKNNYGKLESFNEDS---GRVVVKLALGDEHVTVVESLL 83 (624)
Q Consensus 33 LgLkKGAfVkIVSGPHKGLYGKVEGLDpDN---gRVMVRLAIGGevVTVSEyaV 83 (624)
..+..|+.|.|+.|.|.|.-|+|..+.-.- ..|.|+-|-|+...|+..|++
T Consensus 173 ikfe~Gnl~mvtgG~n~GriG~I~~ie~~~gs~~iV~vkd~~g~~F~T~~~nvf 226 (261)
T 3u5c_E 173 IKFDAGKLVYVTGGRNLGRIGTIVHKERHDGGFDLVHIKDSLDNTFVTRLNNVF 226 (261)
T ss_dssp ECCCSSCCEEECSSTTTTCBCCCCEEECCTTSCCEEEEECTTSCEEEEEGGGEE
T ss_pred EEccCCCEEEEEcCCcceEEEEEEEEEEecCCCcEEEEEECCCCeEEEEeCeEE
Confidence 567779999999999999999999886432 257777788999999998865
No 29
>3iz6_D 40S ribosomal protein S4 (S4E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=65.08 E-value=5.7 Score=39.25 Aligned_cols=52 Identities=21% Similarity=0.284 Sum_probs=42.3
Q ss_pred cceeeCceEEEeccCCCCcccceeeecCCC---ceEEEEEeeCCeeEEEeeceeE
Q psy4064 33 AKLVKNCCVKITGGMFKNNYGKLESFNEDS---GRVVVKLALGDEHVTVVESLLL 84 (624)
Q Consensus 33 LgLkKGAfVkIVSGPHKGLYGKVEGLDpDN---gRVMVRLAIGGevVTVSEyaVR 84 (624)
..+..|+.|.|+.|.|.|.-|+|..+.-.- ..|.|+-|-|+...|+..|++.
T Consensus 173 ikfe~Gnl~mvtgG~n~GriG~I~~ie~~~gs~~iV~vkd~~g~~F~T~~~nvfv 227 (265)
T 3iz6_D 173 IKFDVGNVVMVTGGRNTGRVGVIKNREKHKGSFETIHVEDALGHQFATRLGNVFT 227 (265)
T ss_dssp ECCSTTCEEEECSSSSCSCEEEEEEEECCSSSCCEEEECCCSSCCEEEEGGGEEE
T ss_pred EEccCCCEEEEEcCCcceEEEEEEEEEEecCCCcEEEEEECCCCeEEEEeCeEEE
Confidence 567779999999999999999999887432 2566666889889999888653
No 30
>4a18_F RPL14; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_F 4a1b_F 4a1d_F 4adx_7
Probab=63.34 E-value=4.9 Score=36.00 Aligned_cols=32 Identities=16% Similarity=0.197 Sum_probs=27.6
Q ss_pred eeeCceEEEeccCCCCcccceeeecCCCceEEE
Q psy4064 35 LVKNCCVKITGGMFKNNYGKLESFNEDSGRVVV 67 (624)
Q Consensus 35 LkKGAfVkIVSGPHKGLYGKVEGLDpDNgRVMV 67 (624)
+.+|..|.|..|||.|.-+.|.-+= |..||+|
T Consensus 7 vevGRVv~i~~G~~aGklavIVdII-D~nrvLV 38 (126)
T 4a18_F 7 VQVGRVVYINYGADKGKLAVIVNII-NQNRILI 38 (126)
T ss_dssp EETTEEEEECSSTTTTEEEEEEEEE-TTTEEEE
T ss_pred eecceEEEEccCCccCCEEEEEEEe-cCCeEEE
Confidence 6789999999999999999888874 5568988
No 31
>2xzm_W 40S ribosomal protein S4; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_W
Probab=62.79 E-value=8 Score=38.14 Aligned_cols=55 Identities=20% Similarity=0.201 Sum_probs=44.7
Q ss_pred cceeeCceEEEeccCCCCcccceeeecCC---CceEEEEEeeCCeeEEEeeceeEecCh
Q psy4064 33 AKLVKNCCVKITGGMFKNNYGKLESFNED---SGRVVVKLALGDEHVTVVESLLLRVTQ 88 (624)
Q Consensus 33 LgLkKGAfVkIVSGPHKGLYGKVEGLDpD---NgRVMVRLAIGGevVTVSEyaVRpVSk 88 (624)
..+..|+.|.|+.|.|.|.-|+|...... -..|.|+-|-|+...|+.+|++. |-+
T Consensus 175 ikfe~G~l~mvtgG~n~GriG~I~~~e~~~gs~~iV~vkd~~g~~F~T~~~~vfv-IG~ 232 (260)
T 2xzm_W 175 AHLESGNVCYIQQGNNIGRVGIIQHIEKHQGSFDICHVKDAKGNAFATRLGNIFV-LGQ 232 (260)
T ss_dssp CBCCSSCEEEECSSTTTTCEEEEEEEECCCSSCCEEEEECTTCCCEEEEGGGEEE-EES
T ss_pred EEecCCCEEEEECCccceeEEEEEEEEecCCCCcEEEEEeCCCCeEEEEEeeEEE-ECC
Confidence 67788999999999999999999976544 23477777899999999988854 544
No 32
>3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.75A {Thermoplasma acidophilum}
Probab=58.01 E-value=10 Score=36.45 Aligned_cols=49 Identities=18% Similarity=0.308 Sum_probs=38.0
Q ss_pred cceeeCceEEEeccCCCCcccceeeecCCCce--EEEEEeeCCeeEEEeecee
Q psy4064 33 AKLVKNCCVKITGGMFKNNYGKLESFNEDSGR--VVVKLALGDEHVTVVESLL 83 (624)
Q Consensus 33 LgLkKGAfVkIVSGPHKGLYGKVEGLDpDNgR--VMVRLAIGGevVTVSEyaV 83 (624)
..+..|+.|.|+.|.|.|.-|+|..+.-.-++ -||.+- +...|+..|++
T Consensus 137 ikf~~G~l~mvtgG~n~GriG~I~~ie~~~gs~~~iV~v~--~~F~T~~~~vf 187 (213)
T 3kbg_A 137 IKMQPGNKAYITAGSHVNQTGTISKIEAKEGSSANLVHFQ--EGFSTIKDHVF 187 (213)
T ss_dssp ECCSTTCEEEECSSTTTTCEEEEEEECCCSCC--CEEEET--TTEEEEGGGEE
T ss_pred EEcCCCCEEEEECCCcceEEEEEEEEEEccCCCCCEEEEE--EEEEeeeceEE
Confidence 56777999999999999999999999865554 255554 56777777654
No 33
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=56.05 E-value=15 Score=27.55 Aligned_cols=55 Identities=11% Similarity=-0.220 Sum_probs=41.5
Q ss_pred ceeeCceEEEec-cCCCCcccceeeecCCCceEEEEEeeCCeeEEEeeceeEecCh
Q psy4064 34 KLVKNCCVKITG-GMFKNNYGKLESFNEDSGRVVVKLALGDEHVTVVESLLLRVTQ 88 (624)
Q Consensus 34 gLkKGAfVkIVS-GPHKGLYGKVEGLDpDNgRVMVRLAIGGevVTVSEyaVRpVSk 88 (624)
.+++|..|...- +--.=.=++|+++++++..+.|.+.==|.+.+|.-.-|+|++.
T Consensus 3 ~~~~G~~c~A~~s~Dg~wYrA~I~~i~~~~~~~~V~f~DYGn~e~v~~~~Lr~~~~ 58 (59)
T 1mhn_A 3 QWKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSDLLSPIC 58 (59)
T ss_dssp CCCTTCEEEEECTTTSCEEEEEEEEEETTTTEEEEEETTTTEEEEEEGGGCBCTTC
T ss_pred cCCcCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEEcCCCEEEEcHHHeeCCCC
Confidence 467788777762 1112233899999998899999997768888999888998864
No 34
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=55.79 E-value=17 Score=26.66 Aligned_cols=52 Identities=13% Similarity=-0.092 Sum_probs=36.8
Q ss_pred eeeCceEEEec-cCCCCcccceeeecCCCceEEEEEeeCCeeEEEeeceeEec
Q psy4064 35 LVKNCCVKITG-GMFKNNYGKLESFNEDSGRVVVKLALGDEHVTVVESLLLRV 86 (624)
Q Consensus 35 LkKGAfVkIVS-GPHKGLYGKVEGLDpDNgRVMVRLAIGGevVTVSEyaVRpV 86 (624)
+++|..|...- .--.=.-++|+++++++..+.|.+.==|.+.+|.-.-|+|+
T Consensus 2 wk~G~~c~A~~s~Dg~wYrA~I~~i~~~~~~~~V~fvDYGn~e~v~~~~lrpi 54 (54)
T 3s6w_A 2 WKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSNIKPI 54 (54)
T ss_dssp CCTTCEEEEEETTTTEEEEEEEEEC--CCSEEEEEETTTCCEEEEEGGGEECC
T ss_pred CCCCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEccCCeEEEeHHHEEEC
Confidence 56777777663 21122338999999888889999987777888888888885
No 35
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=54.81 E-value=18 Score=29.02 Aligned_cols=58 Identities=12% Similarity=-0.066 Sum_probs=42.1
Q ss_pred ceeeCceEEEec-cCCCCcccceeeecCCCceEEEEEeeCCeeEEEeeceeEecChHHH
Q psy4064 34 KLVKNCCVKITG-GMFKNNYGKLESFNEDSGRVVVKLALGDEHVTVVESLLLRVTQSEY 91 (624)
Q Consensus 34 gLkKGAfVkIVS-GPHKGLYGKVEGLDpDNgRVMVRLAIGGevVTVSEyaVRpVSkKEY 91 (624)
.+++|..|...- .--.=.=++|+++++++..+.|.+.==|.+.+|.-..|+|++.+-|
T Consensus 17 ~~kvGd~C~A~ys~Dg~wYRA~I~~i~~~~~~~~V~fvDYGN~e~V~~~~Lr~l~~~~~ 75 (77)
T 3pnw_C 17 MWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSNIKPIQTEAW 75 (77)
T ss_dssp TCCTTCEEEEEETTTTEEEEEEEEEECTTSSEEEEEETTTCCEEEEEGGGEECC-----
T ss_pred CCCcCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEcCCCeEEEeHHHeEECChhhc
Confidence 578898888763 2212223999999988888999998878899999999999998754
No 36
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=52.98 E-value=20 Score=29.78 Aligned_cols=56 Identities=11% Similarity=-0.215 Sum_probs=43.9
Q ss_pred ceeeCceEEEec-cCCCCcccceeeecCCCceEEEEEeeCCeeEEEeeceeEecChH
Q psy4064 34 KLVKNCCVKITG-GMFKNNYGKLESFNEDSGRVVVKLALGDEHVTVVESLLLRVTQS 89 (624)
Q Consensus 34 gLkKGAfVkIVS-GPHKGLYGKVEGLDpDNgRVMVRLAIGGevVTVSEyaVRpVSkK 89 (624)
.+++|..|+..- +--.-.-++|++++++++.+.|.+.-=|...+|.-.-|+|++..
T Consensus 10 ~~kvGd~C~A~ys~Dg~wYrA~I~~i~~~~~~~~V~fiDYGN~E~V~~~~Lrp~~~~ 66 (88)
T 1g5v_A 10 QWKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSDLLSPICE 66 (88)
T ss_dssp CCCSSCEEEEECTTTCCEEEEEEEEEETTTTEEEEEETTTCCEEEEEGGGCBCCC--
T ss_pred CCCCCCEEEEEECCCCCEEEEEEEEecCCCCEEEEEEecCCCEEEEcHHHcccCChh
Confidence 578899888874 22233458999999988999999987788888999999999754
No 37
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.87 E-value=21 Score=28.85 Aligned_cols=55 Identities=13% Similarity=0.057 Sum_probs=43.0
Q ss_pred cceeeCceEEEeccCCCCcccceeeecCCCceEEEEEeeCCeeEEEeeceeEecChH
Q psy4064 33 AKLVKNCCVKITGGMFKNNYGKLESFNEDSGRVVVKLALGDEHVTVVESLLLRVTQS 89 (624)
Q Consensus 33 LgLkKGAfVkIVSGPHKGLYGKVEGLDpDNgRVMVRLAIGGevVTVSEyaVRpVSkK 89 (624)
..+++|..|+..----.=.=++|++++++ +.+.|.+--+ ...+|....|+|++..
T Consensus 8 ~~~kvGd~clA~wsDg~~Y~A~I~~v~~~-~~~~V~f~Dy-n~e~v~~~~lrplp~~ 62 (74)
T 2equ_A 8 FDFKAGEEVLARWTDCRYYPAKIEAINKE-GTFTVQFYDG-VIRCLKRMHIKAMPED 62 (74)
T ss_dssp CCCCTTCEEEEECSSSSEEEEEEEEESTT-SSEEEEETTS-CEEEECGGGEECCCGG
T ss_pred CCCCCCCEEEEECCCCCEEEEEEEEECCC-CEEEEEEecC-CeEEecHHHCeeCChh
Confidence 46788998888753112233899999976 6799999888 8999999999999974
No 38
>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear protein; 1.45A {Homo sapiens}
Probab=48.60 E-value=24 Score=30.85 Aligned_cols=59 Identities=17% Similarity=0.115 Sum_probs=45.9
Q ss_pred cccceeeCceEEEeccCCCC-cc---cceeeecCCCceEEEEEeeCCeeEEEeeceeEecChHH
Q psy4064 31 EEAKLVKNCCVKITGGMFKN-NY---GKLESFNEDSGRVVVKLALGDEHVTVVESLLLRVTQSE 90 (624)
Q Consensus 31 EeLgLkKGAfVkIVSGPHKG-LY---GKVEGLDpDNgRVMVRLAIGGevVTVSEyaVRpVSkKE 90 (624)
.+-=|.+|=.|+|++=.+.+ +| |.|..+ .++..+.|+|--+|.+|+|.|-.|.+|-.+.
T Consensus 11 ~~~Wl~~~I~Vrii~k~~~~g~y~~KgvV~~V-~~~~~c~V~l~~~g~~v~v~q~~LETViP~~ 73 (127)
T 2ckk_A 11 TDYWLQPEIIVKIITKKLGEKYHKKKAIVKEV-IDKYTAVVKMIDSGDKLKLDQTHLETVIPAP 73 (127)
T ss_dssp CSCCCCTTBEEEECCSTTCGGGTTCEEEEEEE-ETTTEEEEEETTTCCEEEEEGGGEEECCCCT
T ss_pred CCCcccCCeEEEEEEccCCCcccCceEEEEEe-cCCCeEEEEECCCCCEEEEchHHcEEecCCC
Confidence 33467789999999876643 55 567777 4557788999778899999999999998753
No 39
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1
Probab=45.43 E-value=39 Score=26.87 Aligned_cols=56 Identities=14% Similarity=-0.103 Sum_probs=43.3
Q ss_pred ceeeCceEEEecc-CCCCcccceeeecCCCceEEEEEeeCCeeEEEeeceeEecChH
Q psy4064 34 KLVKNCCVKITGG-MFKNNYGKLESFNEDSGRVVVKLALGDEHVTVVESLLLRVTQS 89 (624)
Q Consensus 34 gLkKGAfVkIVSG-PHKGLYGKVEGLDpDNgRVMVRLAIGGevVTVSEyaVRpVSkK 89 (624)
.+++|..|...-- -.+=.-++|+.+++++..+.|.+.==|.+.+|.-.-|+|+..+
T Consensus 9 ~~~~G~~c~A~~s~Dg~wYRA~I~~i~~~~~~~~V~fiDYGN~e~V~~~~Lr~l~~~ 65 (78)
T 2d9t_A 9 VWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFTDYGNYEEVLLSNIKPVQTE 65 (78)
T ss_dssp CCCTTCEEEEECTTTCCEEEEEEEEECSSSSEEEEEETTTTEEEEEEGGGEEECCCC
T ss_pred CCCcCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEcCCCeEEEcHHHeEeCCHH
Confidence 5677888776531 1122448999999888999999987788999999999999764
No 40
>3u1u_A RNA polymerase-associated protein RTF1 homolog; plus-3, transcription elongation, structural genomics, struc genomics consortium, SGC; 1.80A {Homo sapiens} PDB: 2db9_A
Probab=44.30 E-value=7.7 Score=33.83 Aligned_cols=66 Identities=20% Similarity=0.208 Sum_probs=42.6
Q ss_pred ceeeCceEEEeccCCCC----cccceeeecC-C--------CceEEEEEeeCCe--eEEEeeceeEecChHHHhhhhccc
Q psy4064 34 KLVKNCCVKITGGMFKN----NYGKLESFNE-D--------SGRVVVKLALGDE--HVTVVESLLLRVTQSEYDKNSRVI 98 (624)
Q Consensus 34 gLkKGAfVkIVSGPHKG----LYGKVEGLDp-D--------NgRVMVRLAIGGe--vVTVSEyaVRpVSkKEYDKnSKdL 98 (624)
..+.|+||.|--|++.| .-++|.|+-+ + .--..+.|+.|+. .+.++...=.|+|+.||+++-..+
T Consensus 35 ~~V~GcFVRv~ig~~~~~~~Yrl~qI~gv~~~~k~Y~l~~~~T~~~L~l~~g~~~r~~~~~~vSN~~fte~E~~~w~~~~ 114 (137)
T 3u1u_A 35 KTVTGCFVRIGIGNHNSKPVYRVAEITGVVETAKVYQLGGTRTNKGLQLRHGNDQRVFRLEFVSNQEFTESEFMKWKEAM 114 (137)
T ss_dssp HHHTTCEEEEEEEC----CEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEETTEEEEEEGGGBCSSCCCHHHHHHHHHHH
T ss_pred HheEEEEEEEEeCCCCCCccEEEEEEEEEEecCcccccCCceeeEEEEEEeCCcceEEEeeeecCCCCCHHHHHHHHHHH
Confidence 46789999999999743 3367888831 1 1234666777763 356666666788888888776444
Q ss_pred c
Q psy4064 99 N 99 (624)
Q Consensus 99 N 99 (624)
.
T Consensus 115 ~ 115 (137)
T 3u1u_A 115 F 115 (137)
T ss_dssp H
T ss_pred H
Confidence 3
No 41
>2bze_A KIAA0252 protein; human RTF1 PLUS3 domain, transcription, elongation, PAF1 complex, histone H3 methylation, H2B ubiquitination, CDC73, LEO1, CTR9; NMR {Homo sapiens} SCOP: b.34.21.1
Probab=42.74 E-value=9.4 Score=34.07 Aligned_cols=65 Identities=22% Similarity=0.262 Sum_probs=41.8
Q ss_pred ceeeCceEEEeccCCCC--cc--cceeeecC---------CCceEEEEEeeCCe--eEEEeeceeEecChHHHhhhhccc
Q psy4064 34 KLVKNCCVKITGGMFKN--NY--GKLESFNE---------DSGRVVVKLALGDE--HVTVVESLLLRVTQSEYDKNSRVI 98 (624)
Q Consensus 34 gLkKGAfVkIVSGPHKG--LY--GKVEGLDp---------DNgRVMVRLAIGGe--vVTVSEyaVRpVSkKEYDKnSKdL 98 (624)
..+.|+||.|--|++.| .| ++|.|+-. ..--..+.|+.|+. .+.++-..=.|+|+.||+++-..+
T Consensus 49 ~~V~GcFVRV~ig~~~~~~~YRl~qI~gv~~~~k~Y~l~~~~T~~~L~l~~g~~~r~~~m~~vSN~~fte~Ef~~w~~~~ 128 (153)
T 2bze_A 49 KTVTGCFVRIGIGNHNSKPVYRVAEITGVVETAKVYQLGGTRTNKGLQLRHGNDQRVFRLEFVSNQEFTESEFMKWKEAM 128 (153)
T ss_dssp HHHTTCEEEEESSTTSSSCCEEEEEEEEEEEEEEEEEETTEEEEEEEEEESSSCEEEECGGGBCCSCCCHHHHHHHHHHH
T ss_pred HheEEEEEEEEeCCCCCCccEEEEEEEeEEecCcccccCCcccceEEEEEECCcceEEEeeEeeCCCCCHHHHHHHHHHH
Confidence 46789999999999744 34 55666631 11225566766653 355555555778888888765444
No 42
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.96 E-value=47 Score=28.13 Aligned_cols=57 Identities=16% Similarity=0.087 Sum_probs=45.3
Q ss_pred cccceeeCceEEEe--ccCCCCcccceeeecCCCceEEEEEeeCCeeEEEeeceeEecChH
Q psy4064 31 EEAKLVKNCCVKIT--GGMFKNNYGKLESFNEDSGRVVVKLALGDEHVTVVESLLLRVTQS 89 (624)
Q Consensus 31 EeLgLkKGAfVkIV--SGPHKGLYGKVEGLDpDNgRVMVRLAIGGevVTVSEyaVRpVSkK 89 (624)
.+..++.|.+|-+. .|. +=.=|+|+.++.||. |-|.|-==|...+|+--+|||+..+
T Consensus 18 ~~~~~k~g~~vaak~~d~n-~WyRakV~~v~~~~~-veVl~~DyGn~~~V~~~~LR~L~~~ 76 (85)
T 2eqk_A 18 EPVKWENDMHCAVKIQDKN-QWRRGQIIRMVTDTL-VEVLLYDVGVELVVNVDCLRKLEEN 76 (85)
T ss_dssp CCCCCCSSCEEEEECSSSC-CEEEEEEEEECSSSE-EEEECTTTCCEEEEETTTEEECCHH
T ss_pred cccCccCCCEEEEEeCCCC-eEEEEEEEEecCCCe-EEEEEEccCCEEEEEccccccCCHH
Confidence 35678889887665 332 555699999999999 8888877777899999999999865
No 43
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=35.26 E-value=44 Score=27.39 Aligned_cols=43 Identities=9% Similarity=-0.091 Sum_probs=31.7
Q ss_pred ccccceeeCceEEEeccCCCCcccceeeecCCCceEEEEEeeC
Q psy4064 30 PEEAKLVKNCCVKITGGMFKNNYGKLESFNEDSGRVVVKLALG 72 (624)
Q Consensus 30 EEeLgLkKGAfVkIVSGPHKGLYGKVEGLDpDNgRVMVRLAIG 72 (624)
+....+..|..|+..==-=.-.-|+|..||.+.++.+|++-=|
T Consensus 9 ~~~~~f~vGddVLA~wtDGl~Y~gtI~~V~~~~gtC~V~F~D~ 51 (66)
T 2eqj_A 9 KPACKFEEGQDVLARWSDGLFYLGTIKKINILKQSCFIIFEDS 51 (66)
T ss_dssp CCCCCSCTTCEEEEECTTSCEEEEEEEEEETTTTEEEEEETTT
T ss_pred cccccccCCCEEEEEEccCcEEEeEEEEEccCCcEEEEEEccC
Confidence 3345788999998763222335599999999999999997433
No 44
>4a18_N RPL27, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_N 4a1b_N 4a1d_N
Probab=34.38 E-value=30 Score=31.74 Aligned_cols=36 Identities=25% Similarity=0.234 Sum_probs=28.4
Q ss_pred ceeeCceEEEeccCCCCcccceeeecCCC------ceEEEEE
Q psy4064 34 KLVKNCCVKITGGMFKNNYGKLESFNEDS------GRVVVKL 69 (624)
Q Consensus 34 gLkKGAfVkIVSGPHKGLYGKVEGLDpDN------gRVMVRL 69 (624)
-|++|..|.|++|+|.|.=..|.-.=+|. ++|+|-=
T Consensus 4 f~kpGrVvivl~Gr~aGkkaVIvk~iD~gt~d~~y~~aLVaG 45 (144)
T 4a18_N 4 FLKYGRVVILLQGRFAGKKAVIVKSSEDGTKDRKFGHVLVAG 45 (144)
T ss_dssp CCCTTEEEEECSSTTTTCEEEEEEEESSCCSSCCSCEEEEEE
T ss_pred cccCCeEEEEecCCcCCCEEEEEEecCCCccCCccceEEEEe
Confidence 37899999999999999988887654332 6787764
No 45
>3rux_A BIRA bifunctional protein; biotin-protein ligase, ligase-ligase inhibitor complex; HET: BS5; 1.70A {Mycobacterium tuberculosis} PDB: 3l1a_A 3l2z_A 2cgh_A
Probab=32.64 E-value=35 Score=32.26 Aligned_cols=43 Identities=19% Similarity=0.278 Sum_probs=30.8
Q ss_pred ceeeCceEEEeccCCCCcccceeeecCCCceEEEEEeeCCeeEEEe
Q psy4064 34 KLVKNCCVKITGGMFKNNYGKLESFNEDSGRVVVKLALGDEHVTVV 79 (624)
Q Consensus 34 gLkKGAfVkIVSGPHKGLYGKVEGLDpDNgRVMVRLAIGGevVTVS 79 (624)
.+..|..|.|.......+-|.+.|||+| |+++|++. ++ +.+|+
T Consensus 220 ~~~~g~~V~v~~~~~~~~~G~~~gId~~-G~L~v~~~-~g-~~~i~ 262 (270)
T 3rux_A 220 SLTIGSRVRVELPGGQDVVGIARDIDDQ-GRLCLDVG-GR-TVVVS 262 (270)
T ss_dssp BSSTTSEEEEECTTSCEEEEEEEEECTT-SCEEEEET-TE-EEEES
T ss_pred hcccCCEEEEEECCCeEEEEEEEEECCC-CeEEEEEC-CC-EEEEE
Confidence 4455999999854344578999999965 77999987 44 44443
No 46
>3mea_A SAGA-associated factor 29 homolog; structural genomics consortium, SGC, nucleus, transcription, transcription regulation, chromosomal protein, DNA-binding; HET: M3L; 1.26A {Homo sapiens} PDB: 3meu_A* 3met_A* 3me9_A* 3mev_A* 3lx7_A 3mew_A
Probab=32.08 E-value=94 Score=29.02 Aligned_cols=50 Identities=16% Similarity=0.254 Sum_probs=32.3
Q ss_pred cccceeeecCCCceEEEEEee--CCeeEEEeeceeEecCh----------HHHhhhhcccch
Q psy4064 51 NYGKLESFNEDSGRVVVKLAL--GDEHVTVVESLLLRVTQ----------SEYDKNSRVINM 100 (624)
Q Consensus 51 LYGKVEGLDpDNgRVMVRLAI--GGevVTVSEyaVRpVSk----------KEYDKnSKdLNk 100 (624)
+-+.|.+++.++.|.-|.=+- |.+..+++--.|.|+.+ .+|.+.+++|..
T Consensus 65 ILa~Vv~~~~~~~rYeV~D~d~eg~~~~~~s~~~IIPLP~~~a~p~t~~~~~f~~G~~VLAl 126 (180)
T 3mea_A 65 ILAEVVSYSHATNKYEVDDIDEEGKERHTLSRRRVIPLPQWKANPETDPEALFQKEQLVLAL 126 (180)
T ss_dssp EEEEEEEEETTTTEEEEEECCTTCCEEEEEEGGGEEECCSBBCCTTTCGGGSCCTTCEEEEE
T ss_pred EEEEEEEEcCCCCEEEEecCCCCCceeEEeCHHHEEECCCcCCCcccCccccCCCCCEEEEe
Confidence 445555555555555555544 55677888888888763 457788877765
No 47
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=26.48 E-value=1.2e+02 Score=24.41 Aligned_cols=54 Identities=19% Similarity=0.052 Sum_probs=42.9
Q ss_pred ceeeCceEEEeccCCCCcccceeeecCCCceEEEEEeeCCeeEEEeeceeEecChH
Q psy4064 34 KLVKNCCVKITGGMFKNNYGKLESFNEDSGRVVVKLALGDEHVTVVESLLLRVTQS 89 (624)
Q Consensus 34 gLkKGAfVkIVSGPHKGLYGKVEGLDpDNgRVMVRLAIGGevVTVSEyaVRpVSkK 89 (624)
.+..|.-|+..=|--+=.=++|.+++++ +...|.+-= |.+-+|....|+|++++
T Consensus 6 ~~~vGd~vmArW~D~~yYpA~I~si~~~-~~Y~V~F~d-G~~etvk~~~ikp~~~~ 59 (67)
T 3p8d_A 6 EFQINEQVLACWSDCRFYPAKVTAVNKD-GTYTVKFYD-GVVQTVKHIHVKAFSKD 59 (67)
T ss_dssp CCCTTCEEEEECTTSCEEEEEEEEECTT-SEEEEEETT-SCEEEEEGGGEEECC--
T ss_pred ccccCCEEEEEcCCCCEeeEEEEEECCC-CeEEEEEeC-CceEEEeHHHcccCCcc
Confidence 5777888888775555555899999988 568898865 88999999999999984
No 48
>4av2_M PILP protein, type IV pilus biogenesis and competence protein P; protein transport, outer membrane protein; 26.00A {Neisseria meningitidis MC58}
Probab=26.11 E-value=53 Score=30.20 Aligned_cols=48 Identities=23% Similarity=0.272 Sum_probs=32.2
Q ss_pred CceEEEeccCCCCc-ccceeeecCCCceEEEEEeeCCeeEEEeeceeEec
Q psy4064 38 NCCVKITGGMFKNN-YGKLESFNEDSGRVVVKLALGDEHVTVVESLLLRV 86 (624)
Q Consensus 38 GAfVkIVSGPHKGL-YGKVEGLDpDNgRVMVRLAIGGevVTVSEyaVRpV 86 (624)
|...+|--|-|-|+ ||+|..|.++-. .|+.+.-.|.--++.-...-.+
T Consensus 115 g~v~~V~~G~ylG~n~GrI~~I~~~~i-~l~E~v~Dg~G~W~eR~~~L~L 163 (181)
T 4av2_M 115 GYVYTVGVGNYLGQNYGRIESITDDSI-VLNELIEDSTGNWVSRKAELLL 163 (181)
T ss_dssp TEEEEECSSEEETTTTEEEEEEETTEE-EEEEEEECSSSSEEEEEEEEEC
T ss_pred CCEEEEccCCEeccCCcEEEEEeCCEE-EEEEEeECCCCCEEEEeEEEEc
Confidence 77778889999887 999999998876 5555555544434433333333
No 49
>2eay_A Biotin [acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.95A {Aquifex aeolicus} PDB: 3efs_A* 3fjp_A 3efr_A*
Probab=25.93 E-value=23 Score=32.60 Aligned_cols=36 Identities=25% Similarity=0.213 Sum_probs=27.5
Q ss_pred eeeCceEEEeccCCCCcccceeeecCCCceEEEEEeeCC
Q psy4064 35 LVKNCCVKITGGMFKNNYGKLESFNEDSGRVVVKLALGD 73 (624)
Q Consensus 35 LkKGAfVkIVSGPHKGLYGKVEGLDpDNgRVMVRLAIGG 73 (624)
+..|..|.|..+-- .-|.+.||| ++|+++|+++-|.
T Consensus 185 ~~~g~~V~v~~~~~--~~G~~~gId-~~G~L~v~~~~G~ 220 (233)
T 2eay_A 185 LYLGEEVKLLGEGK--ITGKLVGLS-EKGGALILTEEGI 220 (233)
T ss_dssp TTTTSEEEETTEEE--EEEEEEEEC-TTSCEEEEETTEE
T ss_pred cccCCEEEEEECCe--EEEEEEEEC-CCCeEEEEECCCe
Confidence 44689998876543 789999999 5677999987554
No 50
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=24.29 E-value=1.3e+02 Score=25.53 Aligned_cols=58 Identities=17% Similarity=0.061 Sum_probs=43.3
Q ss_pred cccceeeCceEEEeccCCCCcccceeeecCCCceEEEEEeeCCeeEEEeeceeEecChHH
Q psy4064 31 EEAKLVKNCCVKITGGMFKNNYGKLESFNEDSGRVVVKLALGDEHVTVVESLLLRVTQSE 90 (624)
Q Consensus 31 EeLgLkKGAfVkIVSGPHKGLYGKVEGLDpDNgRVMVRLAIGGevVTVSEyaVRpVSkKE 90 (624)
.+..+..|.-|+..=|--+=.=++|++++++ +...|++-= |.+-+|....|+|++.+.
T Consensus 18 ~~~~f~vGd~VlArW~D~~yYPAkI~sV~~~-~~YtV~F~D-G~~etvk~~~IKp~~~~~ 75 (85)
T 3qii_A 18 GSSEFQINEQVLACWSDCRFYPAKVTAVNKD-GTYTVKFYD-GVVQTVKHIHVKAFSKDQ 75 (85)
T ss_dssp ---CCCTTCEEEEECTTSCEEEEEEEEECTT-SEEEEEETT-SCEEEEEGGGEEECC---
T ss_pred CCcccccCCEEEEEeCCCCEeeEEEEEECCC-CeEEEEEeC-CCeEEecHHHcccCChhh
Confidence 3467888888887765555555899999988 569999865 889999999999999843
No 51
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}
Probab=22.73 E-value=1.5e+02 Score=25.76 Aligned_cols=56 Identities=13% Similarity=0.047 Sum_probs=40.5
Q ss_pred ceeeCceEEEeccCCCCcc-cceeeecCCCceEEEEEeeCCeeEEEeeceeEecChHHHh
Q psy4064 34 KLVKNCCVKITGGMFKNNY-GKLESFNEDSGRVVVKLALGDEHVTVVESLLLRVTQSEYD 92 (624)
Q Consensus 34 gLkKGAfVkIVSGPHKGLY-GKVEGLDpDNgRVMVRLAIGGevVTVSEyaVRpVSkKEYD 92 (624)
.+.+|..|.+.--.-..-| |+|+++++ ..+.|.+.=-|.+.+|.-..|++++ .+|.
T Consensus 51 ~~~~g~~c~a~~~~d~~wyRa~V~~v~~--~~~~V~~vDyG~~~~v~~~~l~~l~-~~~~ 107 (218)
T 2wac_A 51 TPKRGDLVAAQFTLDNQWYRAKVERVQG--SNATVLYIDYGNKETLPTNRLAALP-PAFS 107 (218)
T ss_dssp CCCTTCEEEEECTTTCCEEEEEEEEEET--TEEEEEETTTCCEEEEEGGGEEECC-GGGS
T ss_pred cCCcCCEEEEEECCCCeEEEEEEEEecC--CeEEEEEEecCCeEEEchHHcccCC-hhhc
Confidence 4678888877632112233 99999987 6688888877888889888899998 4553
No 52
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=21.31 E-value=39 Score=32.24 Aligned_cols=36 Identities=19% Similarity=0.163 Sum_probs=27.5
Q ss_pred eeeCceEEEeccCCCCcccceeeecCCCceEEEEEeeC
Q psy4064 35 LVKNCCVKITGGMFKNNYGKLESFNEDSGRVVVKLALG 72 (624)
Q Consensus 35 LkKGAfVkIVSGPHKGLYGKVEGLDpDNgRVMVRLAIG 72 (624)
+..|..|.|..+- ..+-|.+.|||+ +|+++|+..-|
T Consensus 270 ~~~g~~V~v~~~~-~~~~G~~~gid~-~G~L~v~~~~g 305 (321)
T 1bia_A 270 NFINRPVKLIIGD-KEIFGISRGIDK-QGALLLEQDGI 305 (321)
T ss_dssp TTTTSEEEEEETT-EEEEEEEEEECT-TSCEEEEETTE
T ss_pred hhcCCEEEEEECC-cEEEEEEEEECC-CCeEEEEECCC
Confidence 4458889888653 457899999995 66799998754
No 53
>3bfm_A Biotin protein ligase-like protein of unknown FUN; structural genomics, joint center for structural genomics, J protein structure initiative; HET: 2PE; 1.70A {Silicibacter SP}
Probab=21.17 E-value=37 Score=31.02 Aligned_cols=32 Identities=6% Similarity=-0.005 Sum_probs=25.4
Q ss_pred eeeCceEEEeccCCCCcccceeeecCCCceEEEEEeeC
Q psy4064 35 LVKNCCVKITGGMFKNNYGKLESFNEDSGRVVVKLALG 72 (624)
Q Consensus 35 LkKGAfVkIVSGPHKGLYGKVEGLDpDNgRVMVRLAIG 72 (624)
+..|..|.| .| .-|.+.||| ++|+++|+..-|
T Consensus 191 ~~~g~~V~v-~~----~~G~~~gId-~~G~L~v~~~~G 222 (235)
T 3bfm_A 191 HGMGEARTE-AG----RSGTFLGVD-EDFGMLLRDETT 222 (235)
T ss_dssp TTTTSEEEE-TT----EEEEEEEEC-TTCCEEEECSSC
T ss_pred hhcCCEEEE-Ee----EEEEEEEEC-CCCeEEEEeCCC
Confidence 446899999 43 889999999 567799998755
No 54
>2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A 2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A* 2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A 2e10_A ...
Probab=20.85 E-value=43 Score=31.02 Aligned_cols=36 Identities=28% Similarity=0.415 Sum_probs=25.5
Q ss_pred cceeeCceEEEeccCCCCcccceeeecCCCceEEEEEeeC
Q psy4064 33 AKLVKNCCVKITGGMFKNNYGKLESFNEDSGRVVVKLALG 72 (624)
Q Consensus 33 LgLkKGAfVkIVSGPHKGLYGKVEGLDpDNgRVMVRLAIG 72 (624)
..+ .|..|.|..+- . .-|.+.|+|+ +|+++|+.+-|
T Consensus 185 ~~~-~g~~V~v~~~~-~-~~G~~~gId~-~G~L~v~~~~G 220 (235)
T 2dxu_A 185 NMI-LGVRVKILGDG-S-FEGIAEDIDD-FGRLIIRLDSG 220 (235)
T ss_dssp HBC-CSSEEEC-----C-CEEEEEEECT-TSCEEEECTTS
T ss_pred hcc-cCCeEEEEECC-e-EEEEEEEECC-CCEEEEEECCC
Confidence 345 78888887654 3 8999999995 67799998754
Done!