RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4064
(624 letters)
>gnl|CDD|240516 cd13152, KOW_GPKOW_A, KOW motif of the "G-patch domain and KOW
motifs-containing protein" (GPKOW) repeat A. GPKOW
contains one G-patch domain and two KOW motifs. GPKOW
is a nuclear protein that regulated by catalytic (C)
subunit of Protein Kinase A (PKA) and bind RNA in vivo.
PKA may be involved in regulating multiple steps in
post-transcriptional processing of pre-mRNAs. KOW
domain is known as an RNA-binding motif that is shared
so far among some families of ribosomal proteins, the
essential bacterial transcriptional elongation factor
NusG, the eukaryotic chromatin elongation factor Spt5,
the higher eukaryotic KIN17 proteins and Mtr4. GPKOW is
also known as T54 protein or MOS2 homolog.
Length = 57
Score = 62.6 bits (153), Expect = 1e-12
Identities = 28/57 (49%), Positives = 36/57 (63%)
Query: 38 NCCVKITGGMFKNNYGKLESFNEDSGRVVVKLALGDEHVTVVESLLLRVTQSEYDKN 94
VKI G K YGK+E F+ED+ RV+VKLA+G E V+V E + VT+ EY K
Sbjct: 1 GAYVKILSGKHKGLYGKVEGFDEDNSRVIVKLAIGGETVSVSEFAVKLVTKKEYKKY 57
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 53.5 bits (129), Expect = 3e-07
Identities = 35/238 (14%), Positives = 87/238 (36%), Gaps = 3/238 (1%)
Query: 325 KKQSDSREKSRKNKKRHHSSSESEESSSDSDSSSSSSSSEYEKHKKSSKHDKHASKYENI 384
++ + +E+ + + +S+ S + +K KKSS +
Sbjct: 1138 EEALEEQEEVEEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGN 1197
Query: 385 KKQSDSREKRRKNKKRHHSSSESEDSSSDSSDGEKRKRHKKSKKKKTSDTSEEDSYKKRK 444
K+ DS EKR+ + K + S S S + ++ ++ K K S++++ K
Sbjct: 1198 SKRVDSDEKRKLDDKPDNKKSNS---SGSDQEDDEEQKTKPKKSSVKRLKSKKNNSSKSS 1254
Query: 445 KHGKKSLWVDVGLNFGLGARVLQINTSVDAQILSSSSSSEYEKHKKSSKHDKHASKYENK 504
+ + D+ +++ + S +
Sbjct: 1255 EDNDEFSSDDLSKEGKPKNAPKRVSAVQYSPPPPSKRPDGESNGGSKPSSPTKKKVKKRL 1314
Query: 505 KKKSDSGEKSRKNKKRHHSSSESEESSSDSSDEEKRKRHKKSKKKKTSDTSEEDSYKK 562
+ + +K +K++K+ +S+ +S + + ++ +KKK+ +SE+D +
Sbjct: 1315 EGSLAALKKKKKSEKKTARKKKSKTRVKQASASQSSRLLRRPRKKKSDSSSEDDDDSE 1372
Score = 51.2 bits (123), Expect = 2e-06
Identities = 47/249 (18%), Positives = 86/249 (34%), Gaps = 11/249 (4%)
Query: 175 EKKMKQYKTNEPRSQNKHEQYSKQESSRSRRDYQERKRKDSDSEERHQTSHSTSKDKYEF 234
E+ +++ + E + K ++ + ++ + RK K E++ + S + K
Sbjct: 1138 EEALEEQEEVEEKEIAKEQRLKSKTKGKASK---LRKPKLKKKEKKKKKSSADKSKKASV 1194
Query: 235 RSHHREKEYKFVSHKSRSRHYSDSDSEGDDRYKQKSNKKYDSNQKHTSTQERKKYSTKSR 294
+ + + S+S G D+ + K + +K S+KS
Sbjct: 1195 VGNSKRVDSDEKRKLDDKPDNKKSNSSGSDQEDDEEQKTKPKKSSVKRLKSKKNNSSKSS 1254
Query: 295 DSSSSSSSSEYEKHKKSSKHDKHASKYENKKKQSDSREKSRKNKKRHHSSSESEESSSDS 354
+ + SS + K K K S + R N S S +
Sbjct: 1255 EDNDEFSSDDLSKEGKPKNAPKRVSAVQYSPPPPSKRPDGESN----GGSKPSSPTKKKV 1310
Query: 355 DSSSSSSSSEYEKHKKSSK----HDKHASKYENIKKQSDSREKRRKNKKRHHSSSESEDS 410
S + +K KKS K K ++ + SR RR KK+ SSSE +D
Sbjct: 1311 KKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQASASQSSRLLRRPRKKKSDSSSEDDDD 1370
Query: 411 SSDSSDGEK 419
S ++
Sbjct: 1371 SEVDDSEDE 1379
Score = 49.7 bits (119), Expect = 4e-06
Identities = 45/239 (18%), Positives = 84/239 (35%), Gaps = 11/239 (4%)
Query: 303 SEYEKHKKSSKHDKHASKYENKKKQSDSREKSRKNKKRHHSSSESEESSSDSDSSSSSSS 362
E K ++ K + K K +K +K+ + +S DS
Sbjct: 1150 KEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKL 1209
Query: 363 SEYEKHKKSSKHDKHASKYENIKKQSDSREKRRKNKKRHHSSSESEDSSSDSSDGEKRKR 422
+ +KKS+ E K + +R K+++SS SED+ SSD ++
Sbjct: 1210 DDKPDNKKSNSSGSDQEDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEG 1269
Query: 423 HKKSKKKKTSDTSEEDSYKKRKKHGKKSLWVDVGLNFGLGARVLQINTSVDAQILSSS-- 480
K+ K+ S ++ G+ G V ++ S
Sbjct: 1270 KPKNAPKRVSAVQYSPPPPSKRPDGES---------NGGSKPSSPTKKKVKKRLEGSLAA 1320
Query: 481 SSSEYEKHKKSSKHDKHASKYENKKKKSDSGEKSRKNKKRHHSSSESEESSSDSSDEEK 539
+ + KK+++ K ++ + S R KK+ SSSE ++ S E++
Sbjct: 1321 LKKKKKSEKKTARKKKSKTRVKQASASQSSRLLRRPRKKKSDSSSEDDDDSEVDDSEDE 1379
Score = 47.7 bits (114), Expect = 2e-05
Identities = 41/263 (15%), Positives = 80/263 (30%), Gaps = 20/263 (7%)
Query: 273 KYDSNQKHTSTQERKKYSTKSRDSSSSSSSSEYEKHKKSSKHDKHASKYENKKKQSDSRE 332
+ + + + + K K+ + +K KKSS + K+ DS E
Sbjct: 1146 EVEEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDE 1205
Query: 333 KSRKNKKRHHSSSESEESSSDSDSSSSSSSSEYEKHKKSSKHDKHASKYENIKKQSDSRE 392
K + + K + S S S + D + + + SK + + E+ + S
Sbjct: 1206 KRKLDDKPDNKKSNSSGSDQEDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFSSDDL 1265
Query: 393 KRRKNKKRHHSSSESEDSSSDSSDGEKRKRHKKSKKKKTSDTSEEDSYKKRKKHGKKSLW 452
+ K + S + + KK KK + SL
Sbjct: 1266 SKEGKPKNAPKRVSAVQYSPPPPSKRP------DGESNGGSKPSSPTKKKVKKRLEGSL- 1318
Query: 453 VDVGLNFGLGARVLQINTSVDAQILSSSSSSEYEKHKKSSKHDKHASKYENKKKKSDSGE 512
+ ++ ++ + K++S +KKKSDS
Sbjct: 1319 -------------AALKKKKKSEKKTARKKKSKTRVKQASASQSSRLLRRPRKKKSDSSS 1365
Query: 513 KSRKNKKRHHSSSESEESSSDSS 535
+ + + S E +E D
Sbjct: 1366 EDDDDSEVDDSEDEDDEDDEDDD 1388
Score = 47.7 bits (114), Expect = 2e-05
Identities = 50/265 (18%), Positives = 93/265 (35%), Gaps = 18/265 (6%)
Query: 102 KYEEYKEKDAKQSNIEKVKDKSENNHRGEQHEKQYSKYRNSSDSEYEEKKMKPYKTNELL 161
EE +E + K+ E+ + ++ +G+ + R + E+KK K
Sbjct: 1140 ALEEQEEVEEKEIAKEQ---RLKSKTKGKASKL-----RKPKLKKKEKKKKKSSADKSKK 1191
Query: 162 SRVILRNSDSEYEEKKMKQYKTNEPRSQNKHEQYSKQESSRSRRDYQERKRKDSDSEERH 221
+ V+ + + +EK+ K ++ K + + + +K + +
Sbjct: 1192 ASVVGNSKRVDSDEKR----KLDDKPDNKKSNSSGSDQEDDEEQKTKPKKSSVKRLKSKK 1247
Query: 222 QTSHSTSKDKYEFRSHHREKEYKFVSHKSRSRHYSDSDSEGDDRYKQKSNKKYDSNQKHT 281
S +S+D EF S KE K + R S R +SN + T
Sbjct: 1248 NNSSKSSEDNDEFSSDDLSKEGKPKNAPKRVSAVQYSPPPPSKRPDGESNGGSKPS-SPT 1306
Query: 282 STQERKKYSTKSRDSSSSSSSSEYEKHKKSSKHDKHASKYENKKKQSDSREKSRKNKKRH 341
+ +K+ S + KK SK ++ + SR R KK+
Sbjct: 1307 KKKVKKRLEGSLAALKKKKKSEKKTARKKKSK-----TRVKQASASQSSRLLRRPRKKKS 1361
Query: 342 HSSSESEESSSDSDSSSSSSSSEYE 366
SSSE ++ S DS + +
Sbjct: 1362 DSSSEDDDDSEVDDSEDEDDEDDED 1386
Score = 43.5 bits (103), Expect = 3e-04
Identities = 39/242 (16%), Positives = 86/242 (35%), Gaps = 10/242 (4%)
Query: 204 RRDYQERKRKDSDSEERHQTSHSTSKDKYEFRSHHREKEYKFVSHKSRSRHYSDSDSEGD 263
+E++ + +E + SK K + + K K K +S +
Sbjct: 1138 EEALEEQEEVEE--KEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKAS-- 1193
Query: 264 DRYKQKSNKKYDSNQKHTSTQERKKYSTKSRDSSSSSSSSEYEKHKKSSKHDKHASKYEN 323
++K+ DS++K + + S S + K KKSS + K +
Sbjct: 1194 ---VVGNSKRVDSDEKRKLDDKPDNKKSNSSGSDQEDDEEQKTKPKKSSVKRLKSKKNNS 1250
Query: 324 KKKQSDSREKSRKNKKRHHSSSESEESSS---DSDSSSSSSSSEYEKHKKSSKHDKHASK 380
K D+ E S + + + + S S S
Sbjct: 1251 SKSSEDNDEFSSDDLSKEGKPKNAPKRVSAVQYSPPPPSKRPDGESNGGSKPSSPTKKKV 1310
Query: 381 YENIKKQSDSREKRRKNKKRHHSSSESEDSSSDSSDGEKRKRHKKSKKKKTSDTSEEDSY 440
+ ++ + +K++K++K+ +S+ +S + + ++ +KKK+ +SE+D
Sbjct: 1311 KKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQASASQSSRLLRRPRKKKSDSSSEDDDD 1370
Query: 441 KK 442
+
Sbjct: 1371 SE 1372
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 53.2 bits (127), Expect = 4e-07
Identities = 76/490 (15%), Positives = 196/490 (40%), Gaps = 19/490 (3%)
Query: 90 EYDKNSRVINMNKYEEYKEKDAKQSNIEKVKDKSENNHRGEQHEKQYSKYRNSSDSEYEE 149
+ + + + K EE K+ + E+ ++ E E +++ + + +E
Sbjct: 1219 KAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEAR 1278
Query: 150 KKMKPYKTNELLSRVILRNSDS--EYEEKKMKQYKTNEPRSQNKHEQYSKQESSRSRRDY 207
K + K E + ++ + +E K K + + K + +K+++ +++
Sbjct: 1279 KADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKA 1338
Query: 208 QERKRKDSDSEERHQTSHSTSKDKYEFRSHHREKEYKFVSHKSRSRHYSDSDSEGDDRYK 267
+E K+ ++ + E + + E + + + + +++ K
Sbjct: 1339 EEAKKAAEAAKAEAE------AAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKK 1392
Query: 268 QKSNKKYDSNQKHTSTQERKKYSTKSRDSSSSSSSSEYEKHKKSSKHDKHASKYENKKKQ 327
KK K + + +K + K + + + E +K ++ K + A K + KK+
Sbjct: 1393 ADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKK 1452
Query: 328 SDSREKSRKNKKRHHSSSESEESSSDSDSSSSSSSSEYEKHKKSSKHDKHASKYENIKKQ 387
++ +K+ + KK+ + +++E+ ++ + + ++ + + K D+ E KK
Sbjct: 1453 AEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKA 1512
Query: 388 SDSREKRRKNKKRHHSSSESEDSSSDSSDGEKRKRHKKSKKKKTSDTSEEDSYKKRKKHG 447
++++ K +E + ++ E++K+ + KK + +EE K+K
Sbjct: 1513 DEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEE----KKKAEE 1568
Query: 448 KKSLWVDVGLNFGLGARVLQINTSVDAQILSSSSSSEYEKHKKSSKHDKHASKYEN---- 503
K D + + + +++ + K +++ K ++ K E
Sbjct: 1569 AKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKA 1628
Query: 504 ---KKKKSDSGEKSRKNKKRHHSSSESEESSSDSSDEEKRKRHKKSKKKKTSDTSEEDSY 560
KKK +K + KK+ ++EE + + EE +K + KK + + +EED
Sbjct: 1629 EEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEK 1688
Query: 561 KKRKKHGKKS 570
K + K++
Sbjct: 1689 KAAEALKKEA 1698
Score = 40.5 bits (94), Expect = 0.003
Identities = 54/322 (16%), Positives = 131/322 (40%), Gaps = 7/322 (2%)
Query: 249 KSRSRHYSDSDSEGDDRYKQKSNKKYDSNQKHTSTQERKKYSTKSRDSSSSSSSSEYEKH 308
K+ ++ + D YK + N+ +T+E + +++ + + + E K
Sbjct: 1059 KAEAKAHVGQDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAK-KTETGKAEEARKA 1117
Query: 309 KKSSKHDKHASKYENKKKQSDSREKSRKNKKRHHSSSESEESSSDSDSSSSSSSSEYEKH 368
+++ K + A K E +K D+R+ K E + D+ + + +E K
Sbjct: 1118 EEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKK 1177
Query: 369 KKSSKHDKHASKYENIKKQSDSREKRRKNKKRHHSSSESEDSSSDSSDGEKRKRHKKSKK 428
++++ + K E ++K D+R+ K +E + D+ E K+ +++KK
Sbjct: 1178 AEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKK 1237
Query: 429 KKTSDTSEEDSYKKRKKHGKKSLWVDVGLNFGLGARVLQINTSVDAQILSSSSSSEYEKH 488
E++ K ++ + + AR + +A+ +E +K
Sbjct: 1238 D------AEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKK 1291
Query: 489 KKSSKHDKHASKYENKKKKSDSGEKSRKNKKRHHSSSESEESSSDSSDEEKRKRHKKSKK 548
+K + K + KKK++ +K+ + KK+ + + +++ ++E K+ +
Sbjct: 1292 ADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAE 1351
Query: 549 KKTSDTSEEDSYKKRKKHGKKS 570
+ + E + +K + KK
Sbjct: 1352 AEAAADEAEAAEEKAEAAEKKK 1373
Score = 39.7 bits (92), Expect = 0.005
Identities = 50/359 (13%), Positives = 133/359 (37%), Gaps = 3/359 (0%)
Query: 92 DKNSRVINMNKYEEYKEKDAKQSNIEKVKDKSENNHRGEQHEKQYSKYRNSSDSEYEEKK 151
++ + K E K+ DA + E+ K E + E+ +K+ + + + +KK
Sbjct: 1363 EEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKA---AAAKKK 1419
Query: 152 MKPYKTNELLSRVILRNSDSEYEEKKMKQYKTNEPRSQNKHEQYSKQESSRSRRDYQERK 211
K + E KK + K ++ E K E ++ + +++
Sbjct: 1420 ADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKA 1479
Query: 212 RKDSDSEERHQTSHSTSKDKYEFRSHHREKEYKFVSHKSRSRHYSDSDSEGDDRYKQKSN 271
+ ++E + + K E + K+ + K+ +D + ++ K
Sbjct: 1480 EEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEA 1539
Query: 272 KKYDSNQKHTSTQERKKYSTKSRDSSSSSSSSEYEKHKKSSKHDKHASKYENKKKQSDSR 331
KK + +K ++ ++ + + E + + + A K E + + +
Sbjct: 1540 KKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMK 1599
Query: 332 EKSRKNKKRHHSSSESEESSSDSDSSSSSSSSEYEKHKKSSKHDKHASKYENIKKQSDSR 391
+ K + + ++EE+ ++ + + + + K + K E +KK +
Sbjct: 1600 LYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEEN 1659
Query: 392 EKRRKNKKRHHSSSESEDSSSDSSDGEKRKRHKKSKKKKTSDTSEEDSYKKRKKHGKKS 450
+ + + + + + + ++ +++K + KK+ E+ KK + KK+
Sbjct: 1660 KIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKA 1718
Score = 39.0 bits (90), Expect = 0.010
Identities = 69/472 (14%), Positives = 178/472 (37%), Gaps = 4/472 (0%)
Query: 100 MNKYEEYKEKDAKQSNIEKVKDKSENNHRGEQHEKQYSKYRNSSDSEYEEKKMKPYKTNE 159
K EE K+ D + E+ K E + E+ +K+ + ++ + + +
Sbjct: 1295 AKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEA 1354
Query: 160 LLSRVILRNSDSEYEEKKMKQYKTNEPRSQNKHEQYSKQESSRSRRDYQERKRKDSDSEE 219
+E EKK ++ K ++ K E+ K + ++ + + ++K +
Sbjct: 1355 AADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAA 1414
Query: 220 RHQTSHSTSKDKYEFRSHHREKEYKFVSHKS--RSRHYSDSDSEGDDRYKQKSNKKYDSN 277
+ +K K E + E + K K ++ ++ + ++ K+ K
Sbjct: 1415 AAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADE 1474
Query: 278 QKHTSTQERKKYSTKSRDSSSSSSSSEYEKHKKSSKHDKHASKYENKKKQSDSREKSRKN 337
K + + +K K + + + E +K ++ K A K E KK ++++
Sbjct: 1475 AKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAK 1534
Query: 338 KKRHHSSSESEESSSDSDSSSSSSSSEYEKHKKSSKHDKHASKYENIKKQSDSREKRRKN 397
K +E ++ + + + +E +K + +K + K + + + +
Sbjct: 1535 KADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARI 1594
Query: 398 KKRHHSSSESEDSSSDSSDGEKRKRHKKSKKKKTSDTSEEDSYKKRKKHGKKSLWVDVGL 457
++ E + ++ + + + K + KK + ++ K+K+ +K ++
Sbjct: 1595 EEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKK 1654
Query: 458 NFGLGARVLQINTSVDAQILSSSSSSEYEKHKKSSKHDKHASKYENKKKKSDSGEKSRKN 517
+ + ++ + + + + E KK + +K +
Sbjct: 1655 AEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEE 1714
Query: 518 KKRHHSSSESEESSSDSSDEEKRKRHKKSKKKKTSDTSEEDSYKKRKKHGKK 569
KK+ ++EE + ++E K++ + KKK + +++ KK+ H KK
Sbjct: 1715 KKKAEELKKAEEENKIKAEEAKKE--AEEDKKKAEEAKKDEEEKKKIAHLKK 1764
Score = 36.7 bits (84), Expect = 0.045
Identities = 49/339 (14%), Positives = 123/339 (36%), Gaps = 5/339 (1%)
Query: 90 EYDKNSRVINMNKYEEYKEKDAKQSNIEKVKDKSENNHRGEQHEKQYSKYRNSSDSEYEE 149
E +K + K EE K K + E+ K K E + E EK+ ++ ++ E +
Sbjct: 1602 EEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKI 1661
Query: 150 KKMKPYKTNELLSRVILRNSDSEYEEKKMKQYKTNEPRSQNKHEQYSKQESSRSRRDYQE 209
K + K E + +E +EKK + E K E+ K+E+ ++ +
Sbjct: 1662 KAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEEL 1721
Query: 210 RKRKDSDSEERHQTSHSTSKDKYEFRSHHREKEYKFVSHKSRSRHYSDSDSEGDDRYKQK 269
+K ++ + + + +DK + +++E K + H + + + +++
Sbjct: 1722 KKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEE-----EKKKIAHLKKEEEKKAEEIRKE 1776
Query: 270 SNKKYDSNQKHTSTQERKKYSTKSRDSSSSSSSSEYEKHKKSSKHDKHASKYENKKKQSD 329
+ + R + K +D + ++ + + + ++ K+
Sbjct: 1777 KEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIKEVA 1836
Query: 330 SREKSRKNKKRHHSSSESEESSSDSDSSSSSSSSEYEKHKKSSKHDKHASKYENIKKQSD 389
+ + + + +++ + + + + EK K ++ E K D
Sbjct: 1837 DSKNMQLEEADAFEKHKFNKNNENGEDGNKEADFNKEKDLKEDDEEEIEEADEIEKIDKD 1896
Query: 390 SREKRRKNKKRHHSSSESEDSSSDSSDGEKRKRHKKSKK 428
E+ N +++ D D + KR + ++
Sbjct: 1897 DIEREIPNNNMAGKNNDIIDDKLDKDEYIKRDAEETREE 1935
Score = 35.5 bits (81), Expect = 0.11
Identities = 78/483 (16%), Positives = 193/483 (39%), Gaps = 23/483 (4%)
Query: 104 EEYKEKDAKQSNIEKVKDKSENNHRGEQHEKQYSKYRNSSDSEYEEKKMKPYKTNELLSR 163
E K+ + + + K K+E + + K ++ EEK K E +
Sbjct: 1319 EAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKK 1378
Query: 164 VILRNSDSEYEEKKMKQYKTNEPRSQNKHEQYSKQESSRSRRDYQERKRKDSDSEERHQT 223
E+KK + K + K ++ K +++ + D ++K ++ + +
Sbjct: 1379 KADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKK 1438
Query: 224 SHSTSKDKYEFRSHHREKEYKFVSHKSRSRHYSDSDSEGDDRYKQKSNKKYDSNQKHTST 283
+K E + E + K+ +++ D K+K+ + +++
Sbjct: 1439 KAEEAKKADEAKKKAEEAK------KAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKA 1492
Query: 284 QERKKYSTKSRDSSSSSSSSEYEKHKKSSKHDKHASKYENKKKQSDSREKSRKNKKRHHS 343
+E KK + +++ ++ + ++ K + +K A K E KK ++++ K K
Sbjct: 1493 EEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELK 1552
Query: 344 SSESEESSSDSDSSSSSSSSEYEKHKKSSKHDKHASKYENIKKQSDSREKRRKNKKRHHS 403
+E + + + + + +E +K+ K A + + ++ + +++
Sbjct: 1553 KAEELKKAEEKKKAEEAKKAEEDKNMALRK----AEEAKKAEEARIEEVMKLYEEEKKMK 1608
Query: 404 SSESEDSSSDSSDGEKRKRHKKSKKKKTSDTSEEDSYKKRKKHGKKSLWVDVGLNFGLGA 463
+ E++ + E+ K+ ++ KKK +E KK+ + KK+ + + A
Sbjct: 1609 AEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEEN-----KIKA 1663
Query: 464 RVLQINTSVDAQILSSSSSSEYEKHKKSSKHDKHASKY----ENKKKKSDSGEKSRKNKK 519
D + + +E ++ K + K A + E KKK+++ +K+ + KK
Sbjct: 1664 AEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKK 1723
Query: 520 RHHSSSESEESSSDSSDEEKRK----RHKKSKKKKTSDTSEEDSYKKRKKHGKKSLWVDV 575
+ E + ++E+K+K + + +KKK + +E+ K + +K ++
Sbjct: 1724 AEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEE 1783
Query: 576 GLN 578
L+
Sbjct: 1784 ELD 1786
Score = 35.1 bits (80), Expect = 0.12
Identities = 81/469 (17%), Positives = 201/469 (42%), Gaps = 11/469 (2%)
Query: 102 KYEEYKEKDAKQSNIEKVKDKSENNHRGEQHEKQYSKYRNSSDSEYEEKKMKPYKTNELL 161
K E+ K+ +A + E K + + + K +E E +K + K E +
Sbjct: 1171 KAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAE-EARKAEDAKKAEAV 1229
Query: 162 SRVILRNSDSEYEEKKMKQYKTNEPRSQNKHEQYSKQESSRSRRDYQERKRKDSDSEERH 221
+ D+E +K ++ E R + + + + RK + E
Sbjct: 1230 KKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEK 1289
Query: 222 QTSHSTSKDKYEFRSHHREKEYKFVSHKSRSRHYSDSDSEGDDRYKQKSNKKYDSNQKHT 281
+ + K + + ++ +K+ + ++ ++ + D K+K+ + + +
Sbjct: 1290 KKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAE--A 1347
Query: 282 STQERKKYSTKSRDSSSSSSSSEYEKHKKSSKHDKHASKYENKKKQSDSREKSRKNKKRH 341
+ E + + ++ + + ++E +K + K D K E KKK ++++K+ ++KK+
Sbjct: 1348 AKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKA 1407
Query: 342 HSSSESEESSSDSDSSSSSSSSEYEKHKKSSKHDKHASKYENIKKQSDSREKRRKNKKRH 401
++ + +D + + E +K ++ K + A K + KK+++ +K + KK+
Sbjct: 1408 DELKKAAAAKKKADEAKKKAE-EKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKA 1466
Query: 402 HSSSESEDSSSDSSDGEKRKRHKKSKKKKTSDTSEEDSYKKRKKHGKKSLWVDVGLNFGL 461
+ +++++ + E+ K+ ++KKK + D KK + KK+ D
Sbjct: 1467 EEAKKADEAKKKA---EEAKKADEAKKKAEEAKKKADEAKKAAEAKKKA---DEAKKAEE 1520
Query: 462 GARVLQINTSVDAQILSSSSSSEYEKHKKSSKHDKHASKYENKKKKSDSGEKSRKNKKRH 521
+ + + +A+ + +E +K K + K E +KKK++ +K+ ++K
Sbjct: 1521 AKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAE-EKKKAEEAKKAEEDKNMA 1579
Query: 522 HSSSESEESSSDSSDEEKRKRHKKSKKKKTSDTSEEDSYKKRKKHGKKS 570
+E + + ++ EE K +++ KK K + + + K + + KK+
Sbjct: 1580 LRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKA 1628
Score = 32.0 bits (72), Expect = 1.1
Identities = 69/459 (15%), Positives = 178/459 (38%), Gaps = 16/459 (3%)
Query: 102 KYEEYKEKDAKQSNIEKVKDKSENNHRGEQHEKQYSKYRNSSDSEYEEKKMKPYKTN-EL 160
E +A+ + + + + ++ + K ++ +KK + K +
Sbjct: 1350 AEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADE 1409
Query: 161 LSRVILRNSDSEYEEKKMKQYKTNEPRSQNKHEQYSKQESSRSRRDYQERKRKDSDSEER 220
L + ++ +KK ++ K + + E E+ + + ++ + +EE
Sbjct: 1410 LKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEA 1469
Query: 221 HQTSHSTSKDKYEFRSHHREKEYKFVSHKS-RSRHYSDSDSEGDDRYKQKSNKKYDSNQK 279
+ + K + ++ +K+ + K+ ++ +++ + D+ K + KK D +K
Sbjct: 1470 KKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKK 1529
Query: 280 HTSTQERKKYSTKSRDSSSSSSSSEYEKHKKSSKHDKHASKYENKKKQSDSREKSRKNKK 339
E K + +++ + + E +K ++ K ++ E KK + D RK ++
Sbjct: 1530 ----AEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEE 1585
Query: 340 -RHHSSSESEESSSDSDSSSSSSSSEYEKHKKSSKHDKHASKYENIKKQSDSREKRRKNK 398
+ + EE + + E +K +++ + K E KK+ + +K+ +
Sbjct: 1586 AKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEE 1645
Query: 399 KRHHSSSESEDSSSDSSDGEKRKRHKKSKKKKTSDTSEEDSYKKRKKHGKKSLWVDVGLN 458
K+ + + + E+ K+ ++ KKK E+ KK + KK
Sbjct: 1646 KKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKE-------- 1697
Query: 459 FGLGARVLQINTSVDAQILSSSSSSEYEKHKKSSKHDKHASKYENKKKKSDSGEKSRKNK 518
A+ + +A+ + + + + K ++ + E KKK++ +K + K
Sbjct: 1698 -AEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEK 1756
Query: 519 KRHHSSSESEESSSDSSDEEKRKRHKKSKKKKTSDTSEE 557
K+ + EE ++ +EK ++ ++ E
Sbjct: 1757 KKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRME 1795
>gnl|CDD|130009 TIGR00934, 2a38euk, potassium uptake protein, Trk family. The
proteins of the Trk family are derived from
Gram-negative and Gram-positive bacteria, yeast and
wheat. The proteins of E. coli K12 TrkH and TrkG as well
as several yeast proteins have been functionally
characterized.The E. coli TrkH and TrkG proteins are
complexed to two peripheral membrane proteins, TrkA, an
NAD-binding protein, and TrkE, an ATP-binding protein.
This complex forms the potassium uptake system. This
family is specific for the eukaryotic Trk system
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 800
Score = 47.3 bits (112), Expect = 2e-05
Identities = 49/267 (18%), Positives = 89/267 (33%), Gaps = 13/267 (4%)
Query: 141 NSSDSEYEEKKMKPYKTNELLSRVILRNSDSEYEEKKMKQYKTNEPRSQNKHEQYSKQES 200
+ K + L D + + T S + E + K
Sbjct: 166 VAGRVTVPHGSAKRRDFQDKLFSGEFVKRDEPDQNSPDVKSDTRADESISDLE-FEKFAK 224
Query: 201 SRSRRDYQERKRKDSDSEERHQTSHSTSKDKYEFRSHHREKEYKFVSHKSRSRHYSDSDS 260
R RD S Q H ++K S E+ + + + R S SD
Sbjct: 225 RRGSRDVDPEDLYRSIMM--LQGIHERIREKSSANSRSDERSSESIQEQVE-RRPSTSDI 281
Query: 261 EGDDRYKQKSNKKYDSNQKHTSTQERKKYSTKSRDSSSSSSSSEYEKHKKSSKHDKHASK 320
E R Q ++YD + + R+ + ++ + +K + + A
Sbjct: 282 E---RNSQSLTRRYDDKSFDKAVRLRRSKTIDRAEACDLEELDRAKDFEKMTYDNWKAHH 338
Query: 321 YENKK-KQSDSREKSRKNKKRHHSSSESEESSSDSDSSSSSSSSEYEKHKKSSKHDKHAS 379
+ K + K RK + S + E + + S+SSS S E+ SS+ + + +
Sbjct: 339 RKKKNFRPRGWNLKFRKASRFPKDSDRNYEDNGNHLSASSSFGS--EEPSLSSEENLYPT 396
Query: 380 KYENIKKQSDSREKRRKNKKRHHSSSE 406
KK+ DSR K ++ S +
Sbjct: 397 YN---KKREDSRHTLSKTMSTNYLSWQ 420
Score = 36.1 bits (83), Expect = 0.067
Identities = 36/215 (16%), Positives = 74/215 (34%), Gaps = 19/215 (8%)
Query: 107 KEKDAKQSNIEKVKDKSENNHRGEQHEKQYSKYRNSSDSEYEE---KKMKPYKTNELLSR 163
K + Q++ + D + + ++++K R S D + E+ M +E +
Sbjct: 193 KRDEPDQNSPDVKSDTRADESISDLEFEKFAKRRGSRDVDPEDLYRSIMMLQGIHERIRE 252
Query: 164 VILRNSDSEYEEKKMKQ--------YKTNEPRSQNKHEQY---SKQESSRSRRDYQERKR 212
NS S+ + Q E SQ+ +Y S ++ R RR +
Sbjct: 253 KSSANSRSDERSSESIQEQVERRPSTSDIERNSQSLTRRYDDKSFDKAVRLRRSKTIDRA 312
Query: 213 KDSDSEE-----RHQTSHSTSKDKYEFRSHHREKEYKFVSHKSRSRHYSDSDSEGDDRYK 267
+ D EE + + + + + + + SR DSD +D
Sbjct: 313 EACDLEELDRAKDFEKMTYDNWKAHHRKKKNFRPRGWNLKFRKASRFPKDSDRNYEDNGN 372
Query: 268 QKSNKKYDSNQKHTSTQERKKYSTKSRDSSSSSSS 302
S +++ + + E Y T ++ S +
Sbjct: 373 HLSASSSFGSEEPSLSSEENLYPTYNKKREDSRHT 407
>gnl|CDD|115057 pfam06375, BLVR, Bovine leukaemia virus receptor (BLVR). This
family consists of several bovine specific leukaemia
virus receptors which are thought to function as
transmembrane proteins, although their exact function is
unknown.
Length = 561
Score = 44.7 bits (105), Expect = 1e-04
Identities = 56/237 (23%), Positives = 109/237 (45%), Gaps = 10/237 (4%)
Query: 306 EKHKKSSKHDKHASKYENKKKQSDSREKSRKNKKRHHSS-SESEESSSDSDSSSSSSSSE 364
+++ K + +H + E K++ REK ++ ++RHHS +ES+E + + +
Sbjct: 79 DQYVKLEEERRHRQRLEKDKREKKKREKEKRGRRRHHSLGTESDEDIAPAQMVDIVTEEM 138
Query: 365 YEKHKKSSKHDK-----HASKYENIKKQSDSREKRRKNKKRHHSSSESEDSSSDSSDGEK 419
E S + DK + + ++ K EK K R+ +S+S + D EK
Sbjct: 139 PENALPSDEDDKDPNDPYRALDIDLDKPLADSEKLPVQKHRNAETSKSPEKG-DVPAVEK 197
Query: 420 RKRHKKSKKKKTSDTSEEDSYKKRKKHGKKSLWVDVGLNFGLGARVLQINTSVDAQILSS 479
+ + K K+KK + E D KK++ G KSL + + + A V + + + A +S
Sbjct: 198 KSKKPKKKEKKEKE-KERDKDKKKEVEGFKSLLLALDDSPASAASVAEADEASLANTVSG 256
Query: 480 SSSSEYEKHKKSSKHD--KHASKYENKKKKSDSGEKSRKNKKRHHSSSESEESSSDS 534
++ K ++ + K + K++ KK++ + EK +K K HH S+ +
Sbjct: 257 TAPDSEPDEPKDAEAEETKKSPKHKKKKQRKEKEEKKKKKKHHHHRCHHSDGGAEQP 313
>gnl|CDD|240274 PTZ00112, PTZ00112, origin recognition complex 1 protein;
Provisional.
Length = 1164
Score = 41.5 bits (97), Expect = 0.001
Identities = 61/301 (20%), Positives = 109/301 (36%), Gaps = 27/301 (8%)
Query: 136 YSKYRNSSDSEYEEKKMKPYKTNELLSRVILRNSDSEYEEKKMKQYKTNEPRSQNKHEQY 195
S Y S+S + K K N+ I ++ +E KQ K ++ H
Sbjct: 144 TSIYSCLSNSLSSKHSPKVIKENQSTHVNISSDNSPRNKEISNKQLKK---QTNVTHTT- 199
Query: 196 SKQESSRSRRDYQERKRKDSDSEERHQTSHSTSKDKYEFRSHHREKEYKFVSHKSRSRHY 255
+ RS R+ K +D + KDK + +K+ K S KS+
Sbjct: 200 CYDKMRRSPRNTSTIKNNTNDK----NKEKNKEKDKNIKKDRDGDKQTKRNSEKSK---- 251
Query: 256 SDSDSEGDDRYKQKSNKKYDSNQKHTSTQERKKYSTKSRDSSSSSSSSEYEKHKKSSKHD 315
+S D R + K+ ++K+ + R K + S Y H
Sbjct: 252 -VQNSHFDVRILRSYTKENKKDEKNVVSGIRSSVLLKRKSQCLRKDSYVYSNH------- 303
Query: 316 KHASKYENKKKQSDSREKSRKNKKRHHSSSESEESSSDSDSSSSSSSSEYEKHKKSSKHD 375
+ K K D + +N +S+++ SS+ S+ S+ + +KK +
Sbjct: 304 ------QKKAKTGDPKNIIHRNNGSSNSNNDDTSSSNHLGSNRISNRNPSSPYKKQTTT- 356
Query: 376 KHASKYENIKKQSDSREKRRKNKKRHHSSSESEDSSSDSSDGEKRKRHKKSKKKKTSDTS 435
KH + +N K ++ + RHH++ S S+ + R +KS+ K
Sbjct: 357 KHTNNTKNNKYNKTKTTQKFNHPLRHHATINKRSSMLPMSEQKGRGASEKSEYIKEFTME 416
Query: 436 E 436
E
Sbjct: 417 E 417
Score = 40.0 bits (93), Expect = 0.004
Identities = 57/278 (20%), Positives = 107/278 (38%), Gaps = 17/278 (6%)
Query: 174 EEKKMKQYKTNEPRSQNKHEQYSKQESSRSRRDYQERKRKDSDSEERHQTSHSTSKDKYE 233
+ P NK E+++ SS S S + S S
Sbjct: 99 KTPIKNNDNVTTPIKANKKEKHNLDSSSSSSISSSLTNISFFSSPTSIYSCLSNSLS--- 155
Query: 234 FRSHHREKEYKFVSHKSRSRHYSDSDSEGDDRYKQKSNKKYDSNQKHTSTQERKKYSTKS 293
K V +++S H + S S+ R K+ SNK+ T T K
Sbjct: 156 ------SKHSPKVIKENQSTHVNIS-SDNSPRNKEISNKQLKKQTNVTHTTCYDKMRRSP 208
Query: 294 RDSSSSSSSSEYEKHKKSSKHDKHASKYENKKKQSDSREKSRKNKKRHHS----SSESEE 349
R++S+ +++ + +K+ + DK+ K + KQ+ + K + H S ++E
Sbjct: 209 RNTSTIKNNTNDKNKEKNKEKDKNIKKDRDGDKQTKRNSEKSKVQNSHFDVRILRSYTKE 268
Query: 350 SSSDSDSSSSSSSSEYEKHKKSSKHDKHASKYENIKKQSDSREKRRKNKKRHHSSSESED 409
+ D + S S +KS K + Y N +K++ + + + + + SS+ + D
Sbjct: 269 NKKDEKNVVSGIRSSVLLKRKSQCLRKDSYVYSNHQKKAKTGDPKNIIHRNNGSSNSNND 328
Query: 410 SSSDSSDGEKRK---RHKKSKKKKTSDTSEEDSYKKRK 444
+S S+ + R+ S KK + T ++ K K
Sbjct: 329 DTSSSNHLGSNRISNRNPSSPYKKQTTTKHTNNTKNNK 366
Score = 38.0 bits (88), Expect = 0.015
Identities = 49/282 (17%), Positives = 99/282 (35%), Gaps = 37/282 (13%)
Query: 306 EKHKKSSKHDKHASKYENKKKQSDSREKSRKNKKRHHSSSESEESSSDSDSSSSSSSSEY 365
+ K++ + K K+K + S S + SS + S S+S
Sbjct: 99 KTPIKNNDNVTTPIKANKKEKHNLDSSSSSSISS---SLTNISFFSSPTSIYSCLSNSLS 155
Query: 366 EKHKKSSKHDKHASKY---------------ENIKKQSD-----SREKRRKNKKRHHSSS 405
KH + ++ + +KKQ++ +K R++ + +
Sbjct: 156 SKHSPKVIKENQSTHVNISSDNSPRNKEISNKQLKKQTNVTHTTCYDKMRRSPRNTSTIK 215
Query: 406 ESEDSSSDSSDGEKRKRHKKSKKKKTSDTSEEDSYKKRKKHGKKSLWVDVGLNFGLGARV 465
+ + + + EK K KK + + K + H +
Sbjct: 216 NNTNDKNKEKNKEKDKNIKKDRDGDKQTKRNSEKSKVQNSHFDVRILRSYTKE------- 268
Query: 466 LQINTSVDAQILSSSSSSEYEKHKKSSKHDKHASKYENKKKKSDSGEKSRKNKKRHHSSS 525
N + ++S SS K +KS K + Y N +KK+ +G+ + + SS+
Sbjct: 269 ---NKKDEKNVVSGIRSSVLLK-RKSQCLRKDSYVYSNHQKKAKTGDPKNIIHRNNGSSN 324
Query: 526 ESEESSSDSSDEEKRK---RHKKSKKKKTSDTSEEDSYKKRK 564
+ + +S S+ + R+ S KK + T ++ K K
Sbjct: 325 SNNDDTSSSNHLGSNRISNRNPSSPYKKQTTTKHTNNTKNNK 366
>gnl|CDD|233503 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit,
splicing factor. These splicing factors consist of an
N-terminal arginine-rich low complexity domain followed
by three tandem RNA recognition motifs (pfam00076). The
well-characterized members of this family are auxilliary
components of the U2 small nuclear ribonuclearprotein
splicing factor (U2AF). These proteins are closely
related to the CC1-like subfamily of splicing factors
(TIGR01622). Members of this subfamily are found in
plants, metazoa and fungi.
Length = 509
Score = 41.0 bits (96), Expect = 0.001
Identities = 31/125 (24%), Positives = 44/125 (35%), Gaps = 5/125 (4%)
Query: 198 QESSRSRRDYQERKRKDSDSEERHQTSHSTSKDKYEFRSHHREKEYKFVSHKSRSRHYSD 257
+E R R + R R S ER + S+D+ FR HR + SR R
Sbjct: 3 EEPDREREKSRGRDRDRS--SERPR---RRSRDRSRFRDRHRRSRERSYREDSRPRDRRR 57
Query: 258 SDSEGDDRYKQKSNKKYDSNQKHTSTQERKKYSTKSRDSSSSSSSSEYEKHKKSSKHDKH 317
DS + S ++ + S R + R S S+ + KK S D
Sbjct: 58 YDSRSPRSLRYSSVRRSRDRPRRRSRSVRSIEQHRRRLRDRSPSNQWRKDDKKRSLWDIK 117
Query: 318 ASKYE 322
YE
Sbjct: 118 PPGYE 122
Score = 35.3 bits (81), Expect = 0.11
Identities = 22/118 (18%), Positives = 41/118 (34%), Gaps = 5/118 (4%)
Query: 330 SREKSRKNKKRHHSSSESEESSSDSDSSSSSSSSEYEKHKKSSKHDKHASKYENIKKQSD 389
REKSR + S S S S +++ S+ + +Y++ +S
Sbjct: 8 EREKSRGRDRDRSSERPRRRSRDRSRFRDRHRRSRERSYREDSRP-RDRRRYDSRSPRSL 66
Query: 390 SREKRRKNKKRHHSSSESEDSSSDSSDGEKRKRHKKSKKKKTSDTSEEDSYKKRKKHG 447
R+++ R S S S +R+ +S + ++ S K G
Sbjct: 67 RYSSVRRSRDRPRRRSRSVRSIEQ----HRRRLRDRSPSNQWRKDDKKRSLWDIKPPG 120
Score = 34.5 bits (79), Expect = 0.18
Identities = 25/117 (21%), Positives = 48/117 (41%), Gaps = 8/117 (6%)
Query: 284 QERKKYSTKSRDSSSSSSSSEYEKHKKSSKHDKHASKYENKKKQSDSREKSRKNKKRHHS 343
+E + KSR SS E+ ++ S D+ S++ ++ ++S R ++ R
Sbjct: 3 EEPDREREKSRGRDRDRSS---ERPRRRS-RDR--SRFRDRHRRSRERSYREDSRPRDRR 56
Query: 344 SSESEESSSDSDSSSSSSSSEYEKHKKSSKHDKHASKYENIKKQSDSREKRRKNKKR 400
+S S SS S + +S ++ +S S + R+ +KKR
Sbjct: 57 RYDSRSPRSLRYSSVRRSRDRPRRRSRSV--RSIEQHRRRLRDRSPSNQWRKDDKKR 111
Score = 34.1 bits (78), Expect = 0.21
Identities = 19/119 (15%), Positives = 38/119 (31%), Gaps = 6/119 (5%)
Query: 211 KRKDSDSEERHQTSHSTSKDKYEFRSHHREKEYKFVSHKSRSRHYSDSDSEGDDRYKQKS 270
+ D + E+ S ++ RS R + + R R + D R + +
Sbjct: 3 EEPDREREKSRGRDRDRSSERPRRRSRDRSRF------RDRHRRSRERSYREDSRPRDRR 56
Query: 271 NKKYDSNQKHTSTQERKKYSTKSRDSSSSSSSSEYEKHKKSSKHDKHASKYENKKKQSD 329
S + + R+ R S S S ++ + + K + K+ D
Sbjct: 57 RYDSRSPRSLRYSSVRRSRDRPRRRSRSVRSIEQHRRRLRDRSPSNQWRKDDKKRSLWD 115
Score = 34.1 bits (78), Expect = 0.22
Identities = 15/108 (13%), Positives = 31/108 (28%), Gaps = 5/108 (4%)
Query: 167 RNSDSEYEEKKMKQYKTNEPRSQNKH-----EQYSKQESSRSRRDYQERKRKDSDSEERH 221
R D + ++ ++ + R +++H Y + R RR Y R +
Sbjct: 13 RGRDRDRSSERPRRRSRDRSRFRDRHRRSRERSYREDSRPRDRRRYDSRSPRSLRYSSVR 72
Query: 222 QTSHSTSKDKYEFRSHHREKEYKFVSHKSRSRHYSDSDSEGDDRYKQK 269
++ + RS + + S D D
Sbjct: 73 RSRDRPRRRSRSVRSIEQHRRRLRDRSPSNQWRKDDKKRSLWDIKPPG 120
Score = 33.7 bits (77), Expect = 0.27
Identities = 21/137 (15%), Positives = 42/137 (30%), Gaps = 9/137 (6%)
Query: 306 EKHKKSSKHDKHASKYENKKKQSDSREKSR-KNKKRHHSSSESEESSSDSDSSSSSSSSE 364
++ + + ++ R + R + + RH S E S DS
Sbjct: 2 DEEPDREREKSRGRDRDRSSERPRRRSRDRSRFRDRHR---RSRERSYREDSRPRDRRRY 58
Query: 365 YEKHKKSSKHDKHASKYENIKKQSDSREKRRKNKKRHHSSSESEDSSSDSSDGEKRKRHK 424
+ +S ++ + ++ SR R + R S S+ + +KR
Sbjct: 59 DSRSPRSLRYSSVRRSRDRPRR--RSRSVRSIEQHRRRLRDR---SPSNQWRKDDKKRSL 113
Query: 425 KSKKKKTSDTSEEDSYK 441
K + D K
Sbjct: 114 WDIKPPGYELVTADQAK 130
Score = 32.2 bits (73), Expect = 0.89
Identities = 20/112 (17%), Positives = 41/112 (36%), Gaps = 1/112 (0%)
Query: 229 KDKYEFRSHHREKEYKFVSHKSRSRHYSDSDSEGDDRYKQKSNKKYDSNQKHTSTQERKK 288
+D+ R + + R R S S DR+++ + Y + + +
Sbjct: 1 RDEEPDREREKSRGRDRDRSSERPRRRSRDRSRFRDRHRRSRERSYREDSRPRDRRRYDS 60
Query: 289 YSTKSRDSSSSSSSSEYEKHKKSSKHDKHASKYENKKKQSDSREKSRKNKKR 340
S +S SS S + + ++S + +S S + + +KKR
Sbjct: 61 RSPRSLRYSSVRRSRDRPR-RRSRSVRSIEQHRRRLRDRSPSNQWRKDDKKR 111
Score = 29.5 bits (66), Expect = 5.9
Identities = 28/113 (24%), Positives = 38/113 (33%), Gaps = 13/113 (11%)
Query: 347 SEESSSDSDSSSSSSSSEYEKHKKSSKHDKHASKYENIKKQSDSREKRRKNKKRHHSSSE 406
E S D SS +S D+H E + DSR + R+ S
Sbjct: 8 EREKSRGRDRDRSSERPRRRSRDRSRFRDRHRRSRER-SYREDSRPRDRRRYD-----SR 61
Query: 407 SEDSSSDSSDGEKRKRHKKSKKKKTSDTSEED-------SYKKRKKHGKKSLW 452
S S SS R R ++ + S S + RK K+SLW
Sbjct: 62 SPRSLRYSSVRRSRDRPRRRSRSVRSIEQHRRRLRDRSPSNQWRKDDKKRSLW 114
>gnl|CDD|236304 PRK08581, PRK08581, N-acetylmuramoyl-L-alanine amidase; Validated.
Length = 619
Score = 38.6 bits (90), Expect = 0.009
Identities = 30/193 (15%), Positives = 71/193 (36%), Gaps = 16/193 (8%)
Query: 263 DDRYKQKSNKKYDSNQKHTSTQERKKYSTKSRDSSSSSSSSEYE-KHKKSSKHDKHASKY 321
D + + ++K + K S+K D + ++++S + KK S D S
Sbjct: 29 DPQKDSTAKTTSHDSKKSNDDETSKDTSSKDTDKADNNNTSNQDNNDKKFSTIDSSTSDS 88
Query: 322 ENKKKQSDSREKSRKNK----KRHHSSSESEESSSDSDSSSSSSSSEYEKHKKSSKHDKH 377
N K + + S + + + +S S+YE+ + S K
Sbjct: 89 NNIIDFIYKNLPQTNINQLLTKNKYDDNYSLTTLIQNLFNLNSDISDYEQPRNSEKSTND 148
Query: 378 ASKYENIKKQSDSREKRRKNKKRHHSSSESEDSSSDSSDGEKRKRHKKSKK--------- 428
++K + ++D+ + K K + + S +++ S+ ++ K ++
Sbjct: 149 SNKNSDSSIKNDTDTQSSKQDKADNQKAPSSNNTKPSTSNKQPNSPKPTQPNQSNSQPAS 208
Query: 429 --KKTSDTSEEDS 439
+S +D+
Sbjct: 209 DDTANQKSSSKDN 221
Score = 36.7 bits (85), Expect = 0.034
Identities = 31/179 (17%), Positives = 68/179 (37%), Gaps = 12/179 (6%)
Query: 386 KQSDSREKRRKNKKRHHSSSESEDSSSDSSDGEKRKRHKKSKKKKTSDTSEEDSYKKRKK 445
K+S+ E + + +++ ++S+ ++ +K S S+ + YK +
Sbjct: 44 KKSNDDETSKDTSSKDTDKADNNNTSNQDNNDKKFSTIDSSTS--DSNNIIDFIYKNLPQ 101
Query: 446 HGKKSLWVDVGLNFGLGARVLQINTSVDAQILSSSSSSEYEKHKKSSKHDKHASKYENKK 505
L + L N +S S+YE+ + S K ++K +
Sbjct: 102 TNINQLLTKNKYDDNYSLTTLIQNLFN-----LNSDISDYEQPRNSEKSTNDSNKNSDSS 156
Query: 506 KKSDSGEKSRK-----NKKRHHSSSESEESSSDSSDEEKRKRHKKSKKKKTSDTSEEDS 559
K+D+ +S K N+K S++ +S+ + K + +S + SD +
Sbjct: 157 IKNDTDTQSSKQDKADNQKAPSSNNTKPSTSNKQPNSPKPTQPNQSNSQPASDDTANQK 215
Score = 33.6 bits (77), Expect = 0.30
Identities = 33/218 (15%), Positives = 74/218 (33%), Gaps = 14/218 (6%)
Query: 247 SHKSRSRHYSDSDSEGDDRYKQKSNKKYDSNQKHTSTQERKKYSTKSRDSSSSSSSSEYE 306
S + H S ++ + S ++ +TS Q+ + DSS+S S++ +
Sbjct: 34 STAKTTSHDSKKSNDDETSKDTSSKDTDKADNNNTSNQDNNDKKFSTIDSSTSDSNNIID 93
Query: 307 K-----HKKSSKHDKHASKYENKKKQSDSREKSRKNKKRHHSSSESEESSSDSDSSSSSS 361
+ + +KY++ + + + S ++ S+ +S
Sbjct: 94 FIYKNLPQTNINQLLTKNKYDDNYSLTTLIQNLFNLNSDISDYEQPRNSEKSTNDSNKNS 153
Query: 362 SSEYEKHKKSSKH-------DKHASKYENIKKQSDSREKRRK--NKKRHHSSSESEDSSS 412
S + + K S S+ + K + +S S+D+++
Sbjct: 154 DSSIKNDTDTQSSKQDKADNQKAPSSNNTKPSTSNKQPNSPKPTQPNQSNSQPASDDTAN 213
Query: 413 DSSDGEKRKRHKKSKKKKTSDTSEEDSYKKRKKHGKKS 450
S + + S D ED+ K +K + +S
Sbjct: 214 QKSSSKDNQSMSDSALDSILDQYSEDAKKTQKDYASQS 251
Score = 32.1 bits (73), Expect = 1.1
Identities = 24/224 (10%), Positives = 76/224 (33%), Gaps = 3/224 (1%)
Query: 168 NSDSEYEEKKMKQYKTNEPRSQNKHEQYSKQESSRSRRDYQERKRKDSDSEERHQTSHST 227
+ DS+ T+ + + + + ++ + +
Sbjct: 40 SHDSKKSNDDETSKDTSSKDTDKADNNNTSNQDNNDKKFSTIDSSTSDSNNIIDFIYKNL 99
Query: 228 SKDKYEFRSHHREKEYKFVSHKSRSRHYSDSDSEGDDRYKQKSNKKYDSNQKHTSTQERK 287
+ + + + ++ + D + S K + + K++ + +
Sbjct: 100 PQTNINQLLTKNKYDDNYSLTTLIQNLFNLNSDISDYEQPRNSEKSTNDSNKNSDSSIKN 159
Query: 288 KYSTK-SRDSSSSSSSSEYEKHKKSSKHDKHASKYENKKKQSDSREKSRKNKKRHHSSSE 346
T+ S+ + + + + K S +K + + + + + + + SSS+
Sbjct: 160 DTDTQSSKQDKADNQKAPSSNNTKPSTSNKQPNSPKPTQPNQSNSQPASDDTANQKSSSK 219
Query: 347 SEESSSDSDSSSSSSSSEYEKHKKSSKHDKHASKYENIKKQSDS 390
+S SDS+ S +Y + K ++ D + ++ + S++
Sbjct: 220 DNQSM--SDSALDSILDQYSEDAKKTQKDYASQSKKDKTETSNT 261
Score = 30.9 bits (70), Expect = 2.1
Identities = 42/288 (14%), Positives = 92/288 (31%), Gaps = 21/288 (7%)
Query: 106 YKEKDAKQSNIEKVKDKSENNHRGEQHEKQYSKYRNSSDSEYEEKKMKPYKTNELLSRVI 165
Y + K S + S+ ++ E + SK + +D+ ++ S +
Sbjct: 26 YADDPQKDSTAKTTSHDSKKSNDDETSKDTSSKDTDKADNN---NTSNQDNNDKKFSTI- 81
Query: 166 LRNSDSEYEEKKMKQYKTNEPRSQNKHEQYSKQESSRSRRDYQERKRKDSDSEERHQTSH 225
+S S+ YK + N+ +K + + S + + ++
Sbjct: 82 -DSSTSDSNNIIDFIYKNLPQTNINQLLTKNKYDDNYSLTTLIQNLFNLNSDISDYEQPR 140
Query: 226 STSKDKYEFRSHHREKEYKFVSHKSRSRHYSDSDSEGDDRYKQKSNKKYDSNQKHTSTQE 285
++ K + + +S + +D+ + S N +
Sbjct: 141 NSEKSTNDSNKNSDSSIKNDTDTQSSKQDKADNQKAPSSNNTKPSTSNKQPNSPKPTQPN 200
Query: 286 RKKYSTKSRDSSSSSSSSEYEKHKKSSKHDKHASKY-ENKKKQSDSREKSRKNKKRHHSS 344
+ S D+++ SSS+ + S D +Y E+ KK K
Sbjct: 201 QSNSQPASDDTANQKSSSKDNQSMSDSALDSILDQYSEDAKKTQKDYASQSKK------- 253
Query: 345 SESEESSSDSDSSSSSSSSEYEKHKKSSKHDKHASKYENIKKQSDSRE 392
D +S++ + + + K A +EN QS++R
Sbjct: 254 --------DKTETSNTKNPQLPTQDELKHKSKPAQSFENDVNQSNTRS 293
Score = 29.4 bits (66), Expect = 7.1
Identities = 28/263 (10%), Positives = 85/263 (32%), Gaps = 37/263 (14%)
Query: 308 HKKSSKHDKHASKYENKKKQSDSREKSRKNKKRHHSSSESEESSSDSDSSSSSSSSEYEK 367
+ + D A + K+S+ E S+ + +++ +S+ ++ S+ +
Sbjct: 26 YADDPQKDSTAKTTSHDSKKSNDDETSKDTSSKDTDKADNNNTSNQDNNDKKFSTIDSST 85
Query: 368 HKKSSKHDKHASKYENIKKQSDSREKRRKNKKRHHSSSESEDSSSDSSDGEKRKRHKKSK 427
++ D + + + + ++ + + ++ R+ +
Sbjct: 86 SDSNNIIDFIYKNLPQTNINQLLTKNKYDDNYSLTTLIQNLFNLNSDISDYEQPRNSEKS 145
Query: 428 KKKTSDTSEEDSYKKRKKHGKKSLWVDVGLNFGLGARVLQINTSVDAQILSSSSSSEYEK 487
++ S+ + + SS+ +K
Sbjct: 146 TNDSNKNSDSSIKND-----------------------------------TDTQSSKQDK 170
Query: 488 HKKSSKHDKHASKYENKKKKSDSGEKSRKNKKRHHSSSESEESSSDSSDEEKRKRHKKSK 547
+ +K K+ +S + ++ N+ +S S+++++ S + + S
Sbjct: 171 ADNQKAPSSNNTKPSTSNKQPNSPKPTQPNQS--NSQPASDDTANQKSSSKDNQSMSDSA 228
Query: 548 KKKTSDTSEEDSYKKRKKHGKKS 570
D ED+ K +K + +S
Sbjct: 229 LDSILDQYSEDAKKTQKDYASQS 251
>gnl|CDD|240504 cd00380, KOW, KOW: an acronym for the authors' surnames
(Kyrpides, Ouzounis and Woese). KOW domain is known as
an RNA-binding motif that is shared so far among some
families of ribosomal proteins, the essential bacterial
transcriptional elongation factor NusG, the eukaryotic
chromatin elongation factor Spt5, the higher eukaryotic
KIN17 proteins and Mtr4. The KOW motif contains an
invariants glycine residue and comprises alternating
blocks of hydrophilic and hydrophobic residues.
Length = 49
Score = 33.3 bits (77), Expect = 0.020
Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 37 KNCCVKITGGMFKNNYGKLESFNEDSGRVVVKLALGDEHVTV 78
+ + G +K G + + G V VK A G + +
Sbjct: 1 GDVVRVLRGP-YKGREGVVVDIDPRFGIVTVKGATGSKGAEL 41
>gnl|CDD|227709 COG5422, ROM1, RhoGEF, Guanine nucleotide exchange factor for
Rho/Rac/Cdc42-like GTPases [Signal transduction
mechanisms].
Length = 1175
Score = 37.6 bits (87), Expect = 0.023
Identities = 48/243 (19%), Positives = 72/243 (29%), Gaps = 13/243 (5%)
Query: 187 RSQNKHEQYSKQESSRSRRDYQERKRKDSDSEERHQTSHSTSKDKYEFRSHHREKEYKFV 246
R Q K S + + + E K HQ S S F+ R
Sbjct: 36 RLQRKLNPISIRNGADNDIINSESKESFGKYALGHQIFSSFSSSPKLFQ--RRNSAGPIT 93
Query: 247 SHKSRSRHYSDSDSEGDDRYKQKSNKKYDSNQKHTSTQERKKYSTKSRDSSSSSSSSEYE 306
S + S +S D++ S DS + S+ + +K S S +
Sbjct: 94 HSPSATSSTSSLNSNDGDQFSPAS----DSLSFNPSSTQSRKDSGPGDGSPVQKRKNPLL 149
Query: 307 KH-KKSSKHDKHASKYENKKKQSDSREKSRKNKKRHHSSSESEESSSDSDSSSSSSSSEY 365
H N +SRK S S S SSS +S
Sbjct: 150 PSSSTHGTHPPIVFTDNNGSHAGAPNARSRKEIPSLGSQSMQLPSPHFRQKFSSSDTSNG 209
Query: 366 EKHKKSSKHDKHASKYENIKKQSDSREKRRKN---KKRHHSSSESEDSSSDS---SDGEK 419
+ K+ +H+S S + +++ SS SSS+S S K
Sbjct: 210 FSYPSIRKNSRHSSNSMPSFPHSSTAVLLKRHSGSSGASLISSNITPSSSNSEAMSTSSK 269
Query: 420 RKR 422
R
Sbjct: 270 RPY 272
>gnl|CDD|215521 PLN02967, PLN02967, kinase.
Length = 581
Score = 37.3 bits (86), Expect = 0.024
Identities = 21/97 (21%), Positives = 42/97 (43%), Gaps = 1/97 (1%)
Query: 324 KKKQSDSREKSRKNKKRHHSSSESEESSSDSDSSSSSSSSEYEKHKKSSKHDKHASKYEN 383
K+ +R R KK SE E S+ + ++ + K K A+ +
Sbjct: 68 VSKKKPTRSVKRATKKTVVEISEPLEEGSELVVNEDAALDKESKKTPRRTRRKAAAASSD 127
Query: 384 IKKQSDSREKRRKNK-KRHHSSSESEDSSSDSSDGEK 419
++++ ++ R++ K K+ E + S S+ SD E+
Sbjct: 128 VEEEKTEKKVRKRRKVKKMDEDVEDQGSESEVSDVEE 164
Score = 33.9 bits (77), Expect = 0.26
Identities = 18/147 (12%), Positives = 47/147 (31%), Gaps = 7/147 (4%)
Query: 300 SSSSEYEKHKKSSKHDKHASKYENKKKQSDSREKSRKNKKRHHSSSESEESSSDSDSSSS 359
S + + + + + ++K+ S+ +E ++ + S
Sbjct: 11 SFPRCNADVPCLLQSLGFNKFRGERWRLQNKFLLAAGSRKKIESALAVDEEPDENGAVSK 70
Query: 360 SSSSEYEKHKKSSKHDKHASKYENIKK-------QSDSREKRRKNKKRHHSSSESEDSSS 412
+ K + + E + D K+ + R +++ S D
Sbjct: 71 KKPTRSVKRATKKTVVEISEPLEEGSELVVNEDAALDKESKKTPRRTRRKAAAASSDVEE 130
Query: 413 DSSDGEKRKRHKKSKKKKTSDTSEEDS 439
+ ++ + RKR K K + + +S
Sbjct: 131 EKTEKKVRKRRKVKKMDEDVEDQGSES 157
Score = 31.2 bits (70), Expect = 2.0
Identities = 12/78 (15%), Positives = 29/78 (37%), Gaps = 6/78 (7%)
Query: 499 SKYENKKKKSDSGEKSRKNKKRHHSSSESE------ESSSDSSDEEKRKRHKKSKKKKTS 552
+ +KKK + S +++ K S E + E K+ + +K +
Sbjct: 65 NGAVSKKKPTRSVKRATKKTVVEISEPLEEGSELVVNEDAALDKESKKTPRRTRRKAAAA 124
Query: 553 DTSEEDSYKKRKKHGKKS 570
+ E+ ++K ++
Sbjct: 125 SSDVEEEKTEKKVRKRRK 142
Score = 30.8 bits (69), Expect = 2.9
Identities = 22/137 (16%), Positives = 49/137 (35%), Gaps = 6/137 (4%)
Query: 251 RSRHYSDSDSEGDDRYKQKSNKKYDSNQKHTSTQERKKYSTKSRDSS-----SSSSSSEY 305
+ + + E D S KK + K + + + S + S ++ +
Sbjct: 50 KKIESALAVDEEPDENGAVSKKKPTRSVKRATKKTVVEISEPLEEGSELVVNEDAALDKE 109
Query: 306 EKHKKSSKHDKHASKYENKKKQSDSREKSRKNKKRHHSSSESEESSSDSDSSSSSSSSEY 365
K K A+ + +++ + +K RK +K + E+ S+S+ S S
Sbjct: 110 SKKTPRRTRRKAAAASSDVEEEK-TEKKVRKRRKVKKMDEDVEDQGSESEVSDVEESEFV 168
Query: 366 EKHKKSSKHDKHASKYE 382
+ S+ + K +
Sbjct: 169 TSLENESEEELDLEKDD 185
Score = 30.4 bits (68), Expect = 3.7
Identities = 10/52 (19%), Positives = 23/52 (44%)
Query: 508 SDSGEKSRKNKKRHHSSSESEESSSDSSDEEKRKRHKKSKKKKTSDTSEEDS 559
D K + R +++ S + + ++++ RKR K K + + +S
Sbjct: 106 LDKESKKTPRRTRRKAAAASSDVEEEKTEKKVRKRRKVKKMDEDVEDQGSES 157
Score = 30.0 bits (67), Expect = 4.1
Identities = 28/136 (20%), Positives = 53/136 (38%), Gaps = 10/136 (7%)
Query: 403 SSSESEDSSSDSSDGEKRKRHKKSKKKKTSDTSEEDSYKKRKKHGKKSLWVDVGLNFGLG 462
S+ + D D + +K+ +S K+ T T E S ++ + V + L
Sbjct: 53 ESALAVDEEPDENGAVSKKKPTRSVKRATKKTVVEISEPL-----EEGSELVVNEDAALD 107
Query: 463 ARVLQINTSVDAQILSSSSSSEYEKHKKSSKHDKHASKYENKKKKSDSGEKSRKNKKRHH 522
+ + ++SS E EK +K K + + KK D ++ +++
Sbjct: 108 KESKKTPRRTRRKAAAASSDVEEEKTEK-----KVRKRRKVKKMDEDVEDQGSESEVSDV 162
Query: 523 SSSESEESSSDSSDEE 538
SE S + S+EE
Sbjct: 163 EESEFVTSLENESEEE 178
>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional.
Length = 413
Score = 36.2 bits (84), Expect = 0.046
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 3/95 (3%)
Query: 476 ILSSSSSSEYEKHKKSSKHDKHASKYENKKKKSDSGEKSRKNKKRHHSSSESEESSSDSS 535
ILS+ S E + S+K DK K KKKS+ +K +K +K+ S + +
Sbjct: 38 ILSTFSEEENKVATTSTKKDKKEDKNNESKKKSEK-KKKKKKEKKEPKSEGETKLGFKTP 96
Query: 536 DEEKRKRHKKSKKKKTSDTSEEDSYKKRKKHGKKS 570
+ K+ + K K K D + K + +KS
Sbjct: 97 KKSKKTKKKPPKPKPNEDVDNA--FNKIAELAEKS 129
Score = 30.8 bits (70), Expect = 1.9
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 9/99 (9%)
Query: 334 SRKNKKRHHSSSESEESSSDSDSSSSSSSSEYEKHKKSSKHDKHASKYENIKKQSDSREK 393
++K+K + S S + S+ S E + S+K DK K KK+S+ ++K
Sbjct: 16 TQKSKLQPISYIYSNVLVLSKEILSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKK 75
Query: 394 RRKNKKRHHSSSESEDSSSDSSDGEKRKRHKKSKKKKTS 432
++K KK + S+ K KKSKK K
Sbjct: 76 KKKEKK---------EPKSEGETKLGFKTPKKSKKTKKK 105
Score = 30.8 bits (70), Expect = 2.4
Identities = 24/89 (26%), Positives = 34/89 (38%), Gaps = 7/89 (7%)
Query: 482 SSEYEKHKKSSKHDKHASKYENKKKKSDSGEKSRKNKKRHHSSSESEESSSDSSDEEKRK 541
S Y SK E K + S +K +K K + ES S ++K+K
Sbjct: 25 SYIYSNVLVLSKEILSTFSEEENKVATTSTKKDKKEDK-------NNESKKKSEKKKKKK 77
Query: 542 RHKKSKKKKTSDTSEEDSYKKRKKHGKKS 570
+ KK K + + KK KK KK
Sbjct: 78 KEKKEPKSEGETKLGFKTPKKSKKTKKKP 106
Score = 30.1 bits (68), Expect = 3.8
Identities = 17/97 (17%), Positives = 32/97 (32%), Gaps = 1/97 (1%)
Query: 355 DSSSSSSSSEYEKHKKSSKHDKHASKYENIKKQSDSREKRRKNKKRHHSSSE-SEDSSSD 413
S ++ + + E + S+ K + + + +S
Sbjct: 10 SFFSGTTQKSKLQPISYIYSNVLVLSKEILSTFSEEENKVATTSTKKDKKEDKNNESKKK 69
Query: 414 SSDGEKRKRHKKSKKKKTSDTSEEDSYKKRKKHGKKS 450
S +K+K+ KK K + + KK KK KK
Sbjct: 70 SEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKKKP 106
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional.
Length = 1352
Score = 36.3 bits (84), Expect = 0.051
Identities = 31/133 (23%), Positives = 43/133 (32%), Gaps = 18/133 (13%)
Query: 290 STKSRDSSSSSSSSEYEKHKKSSKHDKHASKYENKKKQSDSREKSRKNKKRHHSSSESEE 349
SR +SSSSS E+ S S + R SSS S
Sbjct: 277 GPSSRPGPASSSSSPRERSPSPSP--------------SSPGSGPAPSSPRASSSSSSSR 322
Query: 350 SSSDSDSSSSSSSSEYEKHKKSSKHDKHASKYENIKKQSDSREKRRKNKKRHHSSSESED 409
SS S +SSSS SS + S + + K+ S + S
Sbjct: 323 ESSSSSTSSSSESSRGAAVSPGPSPSRSPSP----SRPPPPADPSSPRKRPRPSRAPSSP 378
Query: 410 SSSDSSDGEKRKR 422
++S +R R
Sbjct: 379 AASAGRPTRRRAR 391
>gnl|CDD|165563 PHA03308, PHA03308, transcriptional regulator ICP4; Provisional.
Length = 1463
Score = 36.3 bits (83), Expect = 0.065
Identities = 20/43 (46%), Positives = 25/43 (58%)
Query: 334 SRKNKKRHHSSSESEESSSDSDSSSSSSSSEYEKHKKSSKHDK 376
S + H SSS S S S S SSS SSSSE + +K+ K D+
Sbjct: 1245 SESSSTMHSSSSSSSSSCSSSSSSSDSSSSEEDGDEKNEKEDR 1287
>gnl|CDD|240519 cd13155, KOW_KIN17, KOW_Kin17 is a RNA-binding motif. KOW domain
of the KIN17protein contributes to the RNA-binding
properties of the whole protein. KOW domain is known as
an RNA-binding motif that is shared so far among some
families of ribosomal proteins, the essential bacterial
transcriptional elongation factor NusG, the eukaryotic
chromatin elongation factor Spt5, the higher eukaryotic
KIN17 proteins and Mtr4. KIN17 is conserved from yeast
to human that ubiquitously expressed at low levels in
mammals tissue and have functions in DNA replication,
DNA repair and cell cycle control.
Length = 54
Score = 32.1 bits (74), Expect = 0.071
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 41 VKITGGMFKNNYGKLESFNEDSGRVVVKLALGDEHVTVVESL 82
V + G ++ LES +ED V+L G VVE +
Sbjct: 5 VLVVNGAYRGCEATLESIDEDKFSATVRLDSGPLKGRVVEGV 46
>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein. This entry is a highly
conserved protein present in eukaryotes.
Length = 680
Score = 35.7 bits (82), Expect = 0.075
Identities = 57/339 (16%), Positives = 112/339 (33%), Gaps = 25/339 (7%)
Query: 245 FVSHKSRSRHYSDSDSEGDDRYKQKSNKKYDSNQKHTSTQERKKYSTKSRDSSSSSSSSE 304
+VS++ R R + E + + S +++K S+ +S+
Sbjct: 173 YVSYRFRLRKQREVQKENEFYMQLLQQALPKEENHTLSVTDKEKSEASSKGLTSTKELVP 232
Query: 305 YEKHKKSSKHDKHASKYENKKKQSDSREKSRKNKKRHHSSSESEESSSDSDSSSSSSSSE 364
+ + K ++ + + S+ + + H S S S +
Sbjct: 233 VQNSGGNHSLSKSSNSQTPELEYSEKGKDHHHSHNHQHHSIGINNHHSKHADSKLQTIEV 292
Query: 365 YEKH-KKSSKHDKHASKYENIKKQSDSREKRRKNKKRHHSSSESEDSSSDSSDGEKRKRH 423
E H KS + + S S K S+ S + S+SS K H
Sbjct: 293 IENHSNKSRPSSSSTNGSKETTSNSSSAAAGSIGSKSSKSAKHSNRNKSNSSP----KSH 348
Query: 424 KKSKKKKTSDTSEEDSYKKRKKHGKKSLWVDVG-LNFGLGARVLQINTSVDAQILSSSSS 482
+ S + ++ K+++ S D G+ A N + +I + S+
Sbjct: 349 SSANGSVPSSSVSDNESKQKRASKSSSGARDSKKDASGMSANGTVENCIPENKISTPSAI 408
Query: 483 SEYEKHKKS-----SKHDKHASKYENKKKKSDSGEKSRKN--------------KKRHHS 523
E+ K + ++ S+ N+ S E+S K+ K
Sbjct: 409 ERLEQDIKKLQAELQQARQNESELRNQISLLTSLERSLKSDLGQLKKENDMLQTKLNSMV 468
Query: 524 SSESEESSSDSSDEEKRKRHKKSKKKKTSDTSEEDSYKK 562
S++ ++ S S E++ K S+ +EE KK
Sbjct: 469 SAKQKDKQSMQSMEKRLKSEADSRVNAEKQLAEEKKRKK 507
Score = 33.7 bits (77), Expect = 0.36
Identities = 32/174 (18%), Positives = 56/174 (32%), Gaps = 28/174 (16%)
Query: 211 KRKDSDSEERHQTSHSTSKDKYEFRSHHREKEYKFVSHKSRSRHYSDSDSEGDDRYKQKS 270
QT +K + H ++ + + ++DS + + + S
Sbjct: 238 GNHSLSKSSNSQTPELEYSEKGKDHHHSHNHQHHSIGINNHHSKHADSKLQTIEVIENHS 297
Query: 271 NKKYDSNQKHTSTQERKKYSTKSRDSSSSSSSSEYEKHKKSSKHDKHASKYENKKKQSDS 330
NK S+ ++E S+ + S S SS+ KH +K +
Sbjct: 298 NKSRPSSSSTNGSKETTSNSSSAAAGSIGSKSSKSAKHSNRNKSN--------------- 342
Query: 331 REKSRKNKKRHHSSSESEESSSDSDSSSSSSSSEYEKHKKSSKHDKHASKYENI 384
SS SS++ SSS S K K++SK A +
Sbjct: 343 -------------SSPKSHSSANGSVPSSSVSDNESKQKRASKSSSGARDSKKD 383
>gnl|CDD|227535 COG5210, COG5210, GTPase-activating protein [General function
prediction only].
Length = 496
Score = 35.2 bits (81), Expect = 0.095
Identities = 26/180 (14%), Positives = 52/180 (28%), Gaps = 9/180 (5%)
Query: 270 SNKKYDSNQKHTS--TQERKKYSTKSRDSSSSSSSSEYEKHKKSSKHD-KHASKYENKKK 326
DS S Q + SS +SS S + ++ + + +
Sbjct: 2 LRSSSDSLISSYSDKAQSLRLSKKLMEFSSPTSSGSAADISISVNESSEEKSVSLLSSPN 61
Query: 327 QSDSREKSRKNKKRHHSSSESEESSSDSDSSSSSSSSEYEKHKKSSKHDKHASKYENIKK 386
+ + K + + SSS + S ++K +K
Sbjct: 62 EEPGSFLNNDLDKSSFNEELPTLLETADRSSSPGNESLSAVVSNFGLNNKS------LKS 115
Query: 387 QSDSREKRRKNKKRHHSSSESEDSSSDSSDGEKRKRHKKSKKKKTSDTSEEDSYKKRKKH 446
QS S E ++ K + S+ K S + + +E ++ +K
Sbjct: 116 QSTSPELPKRLKDSLPTHLPEASSTEKDFSSFKGSSSLNSNPELNKEINELSLKEEPQKL 175
>gnl|CDD|218177 pfam04615, Utp14, Utp14 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 728
Score = 35.4 bits (82), Expect = 0.11
Identities = 50/279 (17%), Positives = 100/279 (35%), Gaps = 31/279 (11%)
Query: 307 KHKKSSKHDKHASKYENKKKQSDSRE-------KSRKNKKRHHSSSESEESSSDSDSSSS 359
KHK +SK K K K ++R+ + + +++ S SEE + S
Sbjct: 277 KHKNTSKWAKSMLKTGRAKYDEEARKALEEQLRQGEELRRKIEGKSVSEEDEDEDSDSEE 336
Query: 360 SSSSEYEKH---------KKSSKHDKHASKYENIKK----------QSDSREKRRKNKKR 400
+ E +K K E ++ +E+ +
Sbjct: 337 EDEDDDEDDDDGENPWMLRKKLGKLKEGEDDEENSGLLSMKFMQRAEARKKEENDAEIEE 396
Query: 401 HHSSSESEDSSSDSSDGEKRKRHKKSKKKKTSDTSEEDSYKKRKKHGKKSLWVDVGLNFG 460
E E+ S + + E K++ +K + +E KK KK K +
Sbjct: 397 LRRELEGEEESDEEENEEPSKKNVGRRKFGPENGEKEAESKKLKKENKNEFKEKKESD-- 454
Query: 461 LGARVLQINTSVDAQILSSSSSSEYEKHKKSSKHDKHASKYENKKKKSDSGEKSRKNKKR 520
L+ + +++ EK +K + ++ + K S G+ ++K +
Sbjct: 455 -EEEELEDEEEAKVEKVANKLLKRSEKAQKEEEEEELDEENPWLKTTSSVGKSAKKQDSK 513
Query: 521 HHSSSESEESSSDSSDEEKRKRHKKSKKKKTSDTSEEDS 559
SSS+ +++++ S + KK KKK+ S ++D
Sbjct: 514 KKSSSKLDKAANKISKA--AVKVKKKKKKEKSIDLDDDL 550
>gnl|CDD|240515 cd06091, KOW_NusG, NusG contains an NGN domain at its N-terminus
and KOW motif at its C-terminus. KOW_NusG motif is one
of the two domains of N-Utilization Substance G (NusG)
a transcription elongation and Rho-termination factor
in bacteria and archaea. KOW domain is known as an
RNA-binding motif that is shared so far among some
families of ribosomal proteins, the essential bacterial
transcriptional elongation factor NusG, the eukaryotic
chromatin elongation factor Spt5, the higher eukaryotic
KIN17 proteins and Mtr4. The eukaryotic ortholog of
NusG is Spt5 with multiple KOW motifs at its
C-terminus.
Length = 56
Score = 30.5 bits (70), Expect = 0.25
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 41 VKITGGMFKNNYGKLESFNEDSGRVVVKL 69
V+I G F GK+E +E+ G+V V +
Sbjct: 10 VRIISGPFAGFEGKVEEIDEEKGKVKVLV 38
>gnl|CDD|233148 TIGR00844, c_cpa1, na(+)/h(+) antiporter. The Monovalent
Cation:Proton Antiporter-1 (CPA1) Family (TC 2.A.36) The
CPA1 family is a large family of proteins derived from
Gram-positive and Gram-negative bacteria, blue green
bacteria, yeast, plants and animals. Transporters from
eukaryotes have been functionally characterized, and all
of these catalyze Na+:H+ exchange. Their primary
physiological functions may be in (1) cytoplasmic pH
regulation, extruding the H+ generated during
metabolism, and (2) salt tolerance (in plants), due to
Na+ uptake into vacuoles. This model is specific for the
fungal members of this family [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 810
Score = 33.7 bits (77), Expect = 0.29
Identities = 49/311 (15%), Positives = 105/311 (33%), Gaps = 51/311 (16%)
Query: 248 HKSRSRHYSDSDSEGDDRYKQKSNKKYDSNQKHTSTQERKKYSTKSRDSSSSSSSSEYEK 307
K R+ + D E +D +++ K+ + H +T + +T + + E+
Sbjct: 514 QKLRNNKEMEDDIEMNDLGRERLQKE---KEAHAATFDLSTTTTTQLGTENGRGGGLEER 570
Query: 308 HKKSSKHDKHASK----YENKKKQSDSREKSRKNKKRHHSSSESEESSSDSDSSSSS-SS 362
K + K + + +++R+ + R+ + ++ S S +S
Sbjct: 571 SKTNIKERSENVNTIYGLDKLARDTENRDVTYVPTSRYDGIESEIDDVYTYENDSESIAS 630
Query: 363 SEYEKHKKSSKHDKHA--SKYENIKKQSDSREKRRKNKKRHHSSSESEDSSSDSSDGEKR 420
SE + KK + ++ A + E+ + ++R+ H + + G +
Sbjct: 631 SERRRIKKLREEEQQAYIAYTEDNQVIIENRQGEILEYVDIHDRGARDAEVGVHNGGRLK 690
Query: 421 KRHKKSKKKKTSDTSEEDSYKKRKKHGKKSLWVDVGLNFGLGARVLQINTSVDAQILSSS 480
+ +K T+E KK K + K V L I+
Sbjct: 691 RALSPPLEKLHQITNEA---KKSKYYAYK---VGNDL------------------IIEDE 726
Query: 481 SSSEYEKHKKSSKHDKHASKYENKKKKSD-------------SGEKSRKNKKRHHSSSES 527
S + +++ S H K + KK+ S R N HS E
Sbjct: 727 SGEVFRRYRISP----HGGKRKIKKRNDSVVSVDEEKAIEGPSRVPERGNHDLLHSEDEM 782
Query: 528 EESSSDSSDEE 538
+ ++S + +
Sbjct: 783 ADDEAESENMD 793
>gnl|CDD|233044 TIGR00600, rad2, DNA excision repair protein (rad2). All proteins
in this family for which functions are known are flap
endonucleases that generate the 3' incision next to DNA
damage as part of nucleotide excision repair. This
family is related to many other flap endonuclease
families including the fen1 family. This family is based
on the phylogenomic analysis of JA Eisen (1999, Ph.D.
Thesis, Stanford University) [DNA metabolism, DNA
replication, recombination, and repair].
Length = 1034
Score = 33.7 bits (77), Expect = 0.38
Identities = 52/299 (17%), Positives = 89/299 (29%), Gaps = 47/299 (15%)
Query: 271 NKKYDSNQKHTSTQERKKYSTKSRDSSSSSSSSEYEKHKKSSKHDKHA-------SKYEN 323
N+ ++ K + Q + RD E E + S+ H K
Sbjct: 246 NQHIENVTKEMNQQHSGNIQRQYRDEGGFLK--EVELRRVVSEDTSHYILIKGIQGKTAV 303
Query: 324 KKKQSDSREKSRKNKKRHHSSSESEESSSDSDSSSSSSSSEYEKHKKSSKHDKHASKYEN 383
K SD + + +S + + S + S S E E + K A+ E+
Sbjct: 304 KAVDSDDESLPSLSSQLDSNSEDLKSSPWEKLKPESESIVEAEPPSPRTLLAKQAAMSES 363
Query: 384 IKKQSDSREKRRKNKKRHHSS-------------------SESEDSSSDSSDGEKRKRHK 424
+ SD E R+ KR++ + + ED +S ++ K
Sbjct: 364 SSEDSDESEWERQELKRNNVAFVDDGSLSPRTLQAIGQALDDDEDKKVSASSDDQASPSK 423
Query: 425 KSKKKKTSDTSEEDSYKKRKKHGKKSLWVDVGLNFGLGARVLQINTSVDAQILSSSSSSE 484
K+K S ED G+ + + ++ LSS +S
Sbjct: 424 KTKMLLISRIEVEDDDLDYLDQGEG----------------IPLMAALQ---LSSVNSKP 464
Query: 485 YEKHKKSSKHDKHASKYENKKKKSDSGEKSRKNKKRHHSSSESEESSSDSSDEEKRKRH 543
+ +S +E K S N S + S+ S E K
Sbjct: 465 EAVASTKIAREVTSSGHEAVPKAVQSLLLGATNDSPIPSEFTILDRKSELSIERTVKPV 523
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase.
Length = 1066
Score = 33.3 bits (76), Expect = 0.41
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 3/93 (3%)
Query: 479 SSSSSEYEKHKKSSKHDKHASKYENKKKKSDSGEKSRKNKKRHHSSSESEESSSDSSDEE 538
S + SE EK + + + K E K K+ + K K ++ + + +SD ++
Sbjct: 2 SRTESEAEKKILTEEELERKKKKEEKAKEKE--LKKLKAAQKEAKAKLQAQQASDGTNVP 59
Query: 539 KRKRHKKSKKKKTSDTSEEDSYKKRKKHGKKSL 571
K K KKS+K+ D + ED G+K
Sbjct: 60 K-KSEKKSRKRDVEDENPEDFIDPDTPFGQKKR 91
Score = 29.9 bits (67), Expect = 4.9
Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 1/91 (1%)
Query: 361 SSSEYEKHKKSSKHDKHASKYENIKKQSDSREKRRKNKKRHHSSSESEDSSSDSSDGEKR 420
S +E E KK ++ K + +K + K+ K ++ + +SD ++ K+
Sbjct: 2 SRTESEAEKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVPKK 61
Query: 421 KRHKKSKKKKTSDTSEEDSYKKRKKHGKKSL 451
KS+K+ D + ED G+K
Sbjct: 62 SEK-KSRKRDVEDENPEDFIDPDTPFGQKKR 91
>gnl|CDD|215565 PLN03083, PLN03083, E3 UFM1-protein ligase 1 homolog; Provisional.
Length = 803
Score = 32.5 bits (74), Expect = 0.70
Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 15/122 (12%)
Query: 319 SKYENKKKQSDSREKSRKNKK-RHHSSSESEESSSDSDSSSSSSSSEYEKHKKSSKHDKH 377
Y+ +K+ D+ + S + S +S+S S+ +K K +S
Sbjct: 375 GIYDQIEKEMDAFSIQASSAGLIGSSEKSLGSNESSPAASNSDKGSKKKKGKSTSTKGGT 434
Query: 378 ASKYENIKKQSDSREKRRKNKKRHHSSSESEDSSSDSSDGEKRKRHKKSKKKKTSDTSEE 437
A + ++ + + K+ + K R SS DS K+ KK S S+E
Sbjct: 435 AESIPDDEEDAPKKGKKNQKKGRDKSSKVPSDS--------------KAGGKKESVKSQE 480
Query: 438 DS 439
D+
Sbjct: 481 DN 482
>gnl|CDD|217503 pfam03344, Daxx, Daxx Family. The Daxx protein (also known as the
Fas-binding protein) is thought to play a role in
apoptosis, but precise role played by Daxx remains to be
determined. Daxx forms a complex with Axin.
Length = 715
Score = 32.2 bits (73), Expect = 1.1
Identities = 40/251 (15%), Positives = 82/251 (32%), Gaps = 7/251 (2%)
Query: 178 MKQYKTNEPRSQNKHEQYSKQESSRSRRDYQERKRKDSDSEERHQTSHSTSKDKYEFRSH 237
MKQ T E + + E+ + SSRS + Q S + E
Sbjct: 393 MKQDDTEEEERRKRQERERQGTSSRSSDPSKASSTSGESPSMASQESEEEESVEEEEEEE 452
Query: 238 HREKEYKFVSHKSRSRHYSDSDSEGDDRYKQKSNKKYDSNQKHTSTQERKKYSTKSRDSS 297
E+E + S + + + E + + + S + + ++ + +
Sbjct: 453 EEEEEEEQES-EEEEGEDEEEEEEVEADNGSEEEMEGSSEGDGDGEEPEEDAERRNSEMA 511
Query: 298 SSSSSSEYEKHKKSSKHDKHASKYENKKKQSDSREKSRKNKKRHHSSSESEESSSDSDSS 357
S SE ++ + SS + + + E + +S E + +E SS ++
Sbjct: 512 GISRMSEGQQPRGSSVQPE-SPQEEPLQPESMDAESVGEESDE-ELLAEESPLSSHTELE 569
Query: 358 SSSSSSEYEKHKKSSKHDKHASKYENIKKQSDSREKRRKNKKRHHSSSESEDSSSDSSDG 417
++ E + S ++DS + + S +D S
Sbjct: 570 GVATPVETKISSSRKLPPPPVS----TSLENDSATVTSTTRNGNVSPHTPQDEQPPSGRK 625
Query: 418 EKRKRHKKSKK 428
KRK +S+
Sbjct: 626 RKRKEEVESEP 636
>gnl|CDD|217414 pfam03189, Otopetrin, Protein of unknown function, DUF270.
Length = 413
Score = 31.9 bits (73), Expect = 1.2
Identities = 14/70 (20%), Positives = 24/70 (34%), Gaps = 7/70 (10%)
Query: 303 SEYEKHKKSSKHDKHASKYENKKKQSDSREKSRKNKKRHHSSSESEESSSDSDSSSSSSS 362
S++E KK+ KH S S + K S+ ES E++ + + S
Sbjct: 90 SKHEILKKAQKHIVF-------DHHSALSHDSSDSSKEQTSTEESTETTVTNLPKAYSLE 142
Query: 363 SEYEKHKKSS 372
+
Sbjct: 143 GPASFSCGRT 152
>gnl|CDD|144165 pfam00467, KOW, KOW motif. This family has been extended to
coincide with ref. The KOW (Kyprides, Ouzounis, Woese)
motif is found in a variety of ribosomal proteins and
NusG.
Length = 32
Score = 27.8 bits (63), Expect = 1.2
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 41 VKITGGMFKNNYGKLESFNEDSGRVVVK 68
V++ G FK GK+ ++ RV V+
Sbjct: 5 VRVISGPFKGKKGKVVEVDDSKARVHVE 32
>gnl|CDD|218440 pfam05110, AF-4, AF-4 proto-oncoprotein. This family consists of
AF4 (Proto-oncogene AF4) and FMR2 (Fragile X E mental
retardation syndrome) nuclear proteins. These proteins
have been linked to human diseases such as acute
lymphoblastic leukaemia and mental retardation. The
family also contains a Drosophila AF4 protein homologue
Lilliputian which contains an AT-hook domain.
Lilliputian represents a novel pair-rule gene that acts
in cytoskeleton regulation, segmentation and
morphogenesis in Drosophila.
Length = 1154
Score = 31.4 bits (71), Expect = 1.6
Identities = 35/160 (21%), Positives = 53/160 (33%), Gaps = 18/160 (11%)
Query: 276 SNQKHTSTQERKKYSTK----SRDSSSSSSSSEYEKHKKSSKHDKHASKYENKKKQSDSR 331
+KH + +E K +K SSS S SS H SS + S +++ S
Sbjct: 748 GKRKHKNDEEADKIESKKQRLEEKSSSCSPSSSSSHHHSSSNKESRKSSRNKEEEMLPSP 807
Query: 332 EKSRKNKKRHHSSSESEESSSDSDSSSSSSSSEYEKHKKSSKHDKHASKYENIKKQSDSR 391
+ + D+SSSS S+ K +SK + K +
Sbjct: 808 SSPLSSSSPKPEHPSRKRPRRQEDTSSSSGP-------FSASSTKSSSKSSSTSKHRKTE 860
Query: 392 EKRRKNKKRHHSSSESEDS-------SSDSSDGEKRKRHK 424
K K H SS + S+ K +R K
Sbjct: 861 GKGSSTSKEHKGSSGDTPNKASSFPVPPLSNGSSKPRRPK 900
Score = 30.3 bits (68), Expect = 3.8
Identities = 38/152 (25%), Positives = 58/152 (38%), Gaps = 9/152 (5%)
Query: 285 ERKKYSTKSRDSSSSSSSSEYEKHKKSSKHDKHASKYENKKKQ--SDSREKSRKNKKRHH 342
E+ S + +S ++S K K+ K+D+ A K E+KK++ S S + HH
Sbjct: 725 EKDSLSAPKKQTSKTASEKSSSKGKRKHKNDEEADKIESKKQRLEEKSSSCSPSSSSSHH 784
Query: 343 SSSESEESSSDSDSS------SSSSSSEYEKHKKSSKHDKHASKYENIKKQSDSREKRRK 396
SS ++ES S + S SS K K + E+ S
Sbjct: 785 HSSSNKESRKSSRNKEEEMLPSPSSPLSSSSPKPEHPSRKRPRRQEDTSSSSGPFSAS-S 843
Query: 397 NKKRHHSSSESEDSSSDSSDGEKRKRHKKSKK 428
K SSS S+ ++ K HK S
Sbjct: 844 TKSSSKSSSTSKHRKTEGKGSSTSKEHKGSSG 875
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family. Atrophin-1 is the
protein product of the dentatorubral-pallidoluysian
atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive
neurodegenerative disorder. It is caused by the
expansion of a CAG repeat in the DRPLA gene on
chromosome 12p. This results in an extended
polyglutamine region in atrophin-1, that is thought to
confer toxicity to the protein, possibly through
altering its interactions with other proteins. The
expansion of a CAG repeat is also the underlying defect
in six other neurodegenerative disorders, including
Huntington's disease. One interaction of expanded
polyglutamine repeats that is thought to be pathogenic
is that with the short glutamine repeat in the
transcriptional coactivator CREB binding protein, CBP.
This interaction draws CBP away from its usual nuclear
location to the expanded polyglutamine repeat protein
aggregates that are characteristic of the polyglutamine
neurodegenerative disorders. This interferes with
CBP-mediated transcription and causes cytotoxicity.
Length = 979
Score = 31.6 bits (71), Expect = 1.7
Identities = 35/151 (23%), Positives = 63/151 (41%), Gaps = 13/151 (8%)
Query: 288 KYSTKSRDSSSSSSSSEYEKHKKSSKHDKHASKYENKKKQSDSREKSRKNKKRHHSSSES 347
K+S ++R S S S+ + K+++ D AS D R R +S S
Sbjct: 2 KHSMRTRRSRGSMSTLRSGRKKQTASPDGRASP-----TNEDQRSSGR--------NSPS 48
Query: 348 EESSSDSDSSSSSSSSEYEKHKKSSKHDKHASKYENIKKQSDSREKRRKNKKRHHSSSES 407
S+S +DS + S+ +K K+ + ++K + K SD+ E R K+ + S
Sbjct: 49 AASTSSNDSKAESTKKPNKKIKEEATSPLKSTKRQREKPASDTEEPERVTAKKSKTQELS 108
Query: 408 EDSSSDSSDGEKRKRHKKSKKKKTSDTSEED 438
+S +GE + S + ++ D
Sbjct: 109 RPNSPSEGEGEGEGEGESSDSRSVNEEGSSD 139
Score = 30.8 bits (69), Expect = 2.6
Identities = 42/160 (26%), Positives = 66/160 (41%), Gaps = 28/160 (17%)
Query: 212 RKDSDSEERHQ-----TSHSTSKDKYEFRSHHREKEYKFVSHKS--RSRHYSDSDSEGDD 264
+D S R+ TS + SK + + + + KE KS R R SD+E +
Sbjct: 36 NEDQRSSGRNSPSAASTSSNDSKAESTKKPNKKIKEEATSPLKSTKRQREKPASDTEEPE 95
Query: 265 RYKQKSNKKYDSNQKHTSTQERKKYSTKSRDSSSSSSSSEYEKHKKSSKHDKHASKYENK 324
R K +K TQE SR +S S E E +SS S+ N+
Sbjct: 96 RVTAKKSK----------TQEL------SRPNSPSEGEGEGEGEGESSD-----SRSVNE 134
Query: 325 KKQSDSREKSRKNKKRHHSSSESEESSSDSDSSSSSSSSE 364
+ SD ++ + N+ S +++ SDSDSS+ +
Sbjct: 135 EGSSDPKDIDQDNRSSSPSIPSPQDNESDSDSSAQQQLLQ 174
>gnl|CDD|236168 PRK08156, PRK08156, type III secretion system protein SpaS;
Validated.
Length = 361
Score = 31.1 bits (71), Expect = 1.9
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 304 EYEKHKKSSKHDKHASKYENKKKQSDSREKSRKNKKRHHSSSESEESSSDSDSSS 358
EY H K K DK K E K+++ + KS+ ++ H SE+ SD +S
Sbjct: 200 EYFLHMKDMKMDKQEVKREYKEQEGNPEIKSK--RREAHQEILSEQVKSDIRNSR 252
>gnl|CDD|233496 TIGR01622, SF-CC1, splicing factor, CC1-like family. This model
represents a subfamily of RNA splicing factors including
the Pad-1 protein (N. crassa), CAPER (M. musculus) and
CC1.3 (H.sapiens). These proteins are characterized by
an N-terminal arginine-rich, low complexity domain
followed by three (or in the case of 4 H. sapiens
paralogs, two) RNA recognition domains (rrm: pfam00706).
These splicing factors are closely related to the U2AF
splicing factor family (TIGR01642). A homologous gene
from Plasmodium falciparum was identified in the course
of the analysis of that genome at TIGR and was included
in the seed.
Length = 457
Score = 31.0 bits (70), Expect = 2.1
Identities = 13/86 (15%), Positives = 34/86 (39%), Gaps = 1/86 (1%)
Query: 265 RYKQKSNKKY-DSNQKHTSTQERKKYSTKSRDSSSSSSSSEYEKHKKSSKHDKHASKYEN 323
RY+ + + + ++ +ER + ++SRD S +Y + ++ + ++Y
Sbjct: 1 RYRDRERGRLRNDTRRSDKGRERSRRRSRSRDRSRRRRDRDYYRGRRGRSRSRSPNRYYR 60
Query: 324 KKKQSDSREKSRKNKKRHHSSSESEE 349
+ R R++ + E
Sbjct: 61 PRGDRSYRRDDRRSGRNTKEPLTEAE 86
Score = 29.1 bits (65), Expect = 8.5
Identities = 15/86 (17%), Positives = 27/86 (31%), Gaps = 2/86 (2%)
Query: 325 KKQSDSREKSR-KNKKRHHSSSESEESSSDSDSSSSSS-SSEYEKHKKSSKHDKHASKYE 382
+ + R + R ++ S S D S Y + S+ Y
Sbjct: 1 RYRDRERGRLRNDTRRSDKGRERSRRRSRSRDRSRRRRDRDYYRGRRGRSRSRSPNRYYR 60
Query: 383 NIKKQSDSREKRRKNKKRHHSSSESE 408
+S R+ RR + +E+E
Sbjct: 61 PRGDRSYRRDDRRSGRNTKEPLTEAE 86
Score = 28.7 bits (64), Expect = 9.7
Identities = 16/88 (18%), Positives = 33/88 (37%)
Query: 249 KSRSRHYSDSDSEGDDRYKQKSNKKYDSNQKHTSTQERKKYSTKSRDSSSSSSSSEYEKH 308
+ R R +D+ D+ +++S ++ S + ++R Y + S S S + Y
Sbjct: 3 RDRERGRLRNDTRRSDKGRERSRRRSRSRDRSRRRRDRDYYRGRRGRSRSRSPNRYYRPR 62
Query: 309 KKSSKHDKHASKYENKKKQSDSREKSRK 336
S N K+ E+ +
Sbjct: 63 GDRSYRRDDRRSGRNTKEPLTEAERDDR 90
>gnl|CDD|240517 cd13153, KOW_GPKOW_B, KOW motif of the "G-patch domain and KOW
motifs-containing protein" (GPKOW) repeat B. GPKOW
contains one G-patch domain and two KOW motifs. GPKOW
is a nuclear protein that regulated by catalytic (C)
subunit of Protein Kinase A (PKA) and bind RNA in vivo.
PKA may be involved in regulating multiple steps in
post-transcriptional processing of pre-mRNAs. KOW
domain is known as an RNA-binding motif that is shared
so far among some families of ribosomal proteins, the
essential bacterial transcriptional elongation factor
NusG, the eukaryotic chromatin elongation factor Spt5,
the higher eukaryotic KIN17 proteins and Mtr4. GPKOW is
also known as the T54 protein or MOS2 homolog.
Length = 51
Score = 27.5 bits (62), Expect = 2.4
Identities = 10/41 (24%), Positives = 16/41 (39%)
Query: 38 NCCVKITGGMFKNNYGKLESFNEDSGRVVVKLALGDEHVTV 78
V + G + GKL ++ VV+L VT+
Sbjct: 1 GAYVMVVRGKHRGQVGKLLERDKKKETAVVQLLDDFSVVTL 41
>gnl|CDD|211826 TIGR03497, FliI_clade2, flagellar protein export ATPase FliI.
Members of this protein family are the FliI protein of
bacterial flagellum systems. This protein acts to drive
protein export for flagellar biosynthesis. The most
closely related family is the YscN family of bacterial
type III secretion systems. This model represents one
(of three) segment of the FliI family tree. These have
been modeled separately in order to exclude the type III
secretion ATPases more effectively [Cellular processes,
Chemotaxis and motility].
Length = 413
Score = 30.7 bits (70), Expect = 2.4
Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 11/75 (14%)
Query: 130 EQHEKQYSKYRNSSDSEYEEKKMKPYKTNELLSRV--ILRNSDSEYEEKKMKQYKTNEPR 187
E+H++ K R + + YK E L + R S+ + +E K N
Sbjct: 342 EEHKELAGKLR---------ELLAVYKEAEDLINIGAYKRGSNPKIDEAIRYIEKINSFL 392
Query: 188 SQNKHEQYSKQESSR 202
Q E+++ +E+ +
Sbjct: 393 KQGIDEKFTFEETVQ 407
>gnl|CDD|221121 pfam11489, DUF3210, Protein of unknown function (DUF3210). This is
a family of proteins conserved in yeasts. The function
is not known. The Schizosaccharomyces pombe member is
SPBC18E5.07 and the Saccharomyces cerevisiae member is
AIM21.
Length = 671
Score = 30.7 bits (69), Expect = 2.6
Identities = 22/152 (14%), Positives = 51/152 (33%), Gaps = 8/152 (5%)
Query: 273 KYDSNQKHTSTQERK--KYSTKSRDSSSSSSSSEYEKHKKSSKHDKHASKYENKKKQSDS 330
K + ++ + + R+ K ++ + E ++ K ++
Sbjct: 339 KSEKSRHESDPKSRENSKPASIYGSVPDLIRHTPLEDVEEYEPLFPEDESEIAVKPPTEE 398
Query: 331 REKSRKNKKRHHSSSESEESSSDSDSSSSSSSSEYEKHKKSSKHDKHASK---YENIKKQ 387
+ + +K S + E S S +++ S+ ++S+ + + E
Sbjct: 399 SSRRPEEEKHRFPSEDVWEDSPSSLQDTATVSTPSNPPPRASETPEQETSRSSSEVSLDP 458
Query: 388 SDSREKRRKNKKRHHSSSE---SEDSSSDSSD 416
S K K K R S + S D D+ +
Sbjct: 459 HQSELKSEKKKARPEVSKQRFPSRDVWEDAPE 490
>gnl|CDD|177089 CHL00189, infB, translation initiation factor 2; Provisional.
Length = 742
Score = 30.6 bits (69), Expect = 2.8
Identities = 31/143 (21%), Positives = 59/143 (41%), Gaps = 14/143 (9%)
Query: 270 SNKKYDSNQKHTSTQERKKYSTKSRDS---SSSSSSSEYEKHKKSSKHDKHASKYENKKK 326
N + N KH+S + R + + +DS + + KK+ K +K ++KK
Sbjct: 18 KNPLFIKNLKHSSYKIRLE--SDIKDSLLNLDINKKLHEKLDKKNKKFNKTDDLKDSKK- 74
Query: 327 QSDSREKSRKNKKRHHSSSESEESSSDSDSSSSSSSSEYEKHKKSSKHDKHASKYENIKK 386
++ K +K K+ + ++ DS ++S ++ S K K E +KK
Sbjct: 75 ---TKLKQKKKIKKKLHIDDDYDNFFDSKNNSK----QFAGPLAISLMRKPKPKTEKLKK 127
Query: 387 -QSDSREKRRKNKKRHHSSSESE 408
+ ++ +K KK S E
Sbjct: 128 KITVNKSTNKKKKKVLSSKDELI 150
Score = 29.8 bits (67), Expect = 5.0
Identities = 23/119 (19%), Positives = 41/119 (34%), Gaps = 3/119 (2%)
Query: 336 KNKKRHHSSSESEESSSDSDSSSSSSSSEYEKHKKSSKHDKHASKYENIKKQSDSREKRR 395
KN K E DS + + +EK K +K ++ KK ++K+
Sbjct: 24 KNLKHSSYKIRLESDIKDSLLNLDINKKLHEKLDKKNKKFNKTDDLKDSKKTKLKQKKKI 83
Query: 396 KNKKRHHSSSES---EDSSSDSSDGEKRKRHKKSKKKKTSDTSEEDSYKKRKKHGKKSL 451
K K ++ ++S G + K KT ++ + K KK +
Sbjct: 84 KKKLHIDDDYDNFFDSKNNSKQFAGPLAISLMRKPKPKTEKLKKKITVNKSTNKKKKKV 142
>gnl|CDD|185600 PTZ00410, PTZ00410, NAD-dependent SIR2; Provisional.
Length = 349
Score = 30.2 bits (68), Expect = 3.7
Identities = 13/40 (32%), Positives = 16/40 (40%)
Query: 335 RKNKKRHHSSSESEESSSDSDSSSSSSSSEYEKHKKSSKH 374
+ S S S S SDSS+SSSS Y +
Sbjct: 258 HADSVAKEGRSSSSSSRSSSDSSTSSSSDGYGQFGDYEAD 297
>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein. This family
consists of several Borrelia P83/P100 antigen proteins.
Length = 489
Score = 30.0 bits (67), Expect = 3.9
Identities = 25/161 (15%), Positives = 64/161 (39%), Gaps = 5/161 (3%)
Query: 279 KHTSTQERKKYSTKSRDSSSSSSSSEYEKHKKSSKHDKHASKYENKKKQSDSREKSRKNK 338
K +QE K + + ++ + +K+ +A K ++ +Q K+
Sbjct: 204 KERESQEDAKRAQQLKEELDKKQIDADKAQQKADFAQDNADKQRDEVRQKQQEAKNLPKP 263
Query: 339 KRHHSSSESEESSSDSDSSSSSSSSEYEKHKKSSKHDKHASKYENIKKQSDSREKRRKNK 398
S E ++ + + + E +K+ + + K K ++K++S + EK +
Sbjct: 264 ADTSSPKEDKQVAENQKREIEKAQIEIKKNDEEALKAKDH-KAFDLKQESKASEKEAE-D 321
Query: 399 KRHHSSSESEDSSSDSSDGEKRKRHKKSKKKKTSDTSEEDS 439
K + + E + D +K K +++ ++ + + S
Sbjct: 322 KELEAQKKREPVAEDL---QKTKPQVEAQPTSLNEDAIDSS 359
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit;
Provisional.
Length = 482
Score = 29.9 bits (68), Expect = 4.1
Identities = 18/86 (20%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 366 EKHKKSSKHDKHASKYENIKKQSDSREKRRKNKKRHHSSSESEDSSSDSSDGEKRKRHKK 425
E+ + K A+K IKK + EK+R+ +K+ + + E++++ ++
Sbjct: 396 EEEIEFLTGSKKATK--KIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEE 453
Query: 426 SKKKKTSDTSEEDSYKKRKKHGKKSL 451
K+++ + EE ++ KK + +L
Sbjct: 454 EKEEEEEEAEEEKEEEEEKKKKQATL 479
>gnl|CDD|223020 PHA03246, PHA03246, large tegument protein UL36; Provisional.
Length = 3095
Score = 29.9 bits (67), Expect = 5.1
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 376 KHASKYENIKKQSDSREKRRKNKKRHHSSSESEDSSSDSSDGEKRKRHKKSKKKKTSD 433
H +K + + S+SR KRR+ SSSE+ SS + + RK +KSK+ D
Sbjct: 447 GHDTKSDRRSRGSNSRHKRRRPSWTPPSSSENV-SSDGPTFSQSRKPSRKSKRALDLD 503
>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2
domain [General function prediction only].
Length = 1227
Score = 29.7 bits (67), Expect = 5.2
Identities = 22/117 (18%), Positives = 36/117 (30%), Gaps = 10/117 (8%)
Query: 259 DSEGDDRYKQKSNKKYDSNQK----HTSTQERKKYSTKSRDSSSSSSSSEYEKHKKSSKH 314
S Y+ N Y N+ + R + + K + E + +
Sbjct: 1 ASTKQQHYRSSDN--YSGNRPIPTIPKFFRSRGQRAEKKEEEQEMQPEDEKLFAPIAQRT 58
Query: 315 DKHASKYENKKKQSDSREKSRKNKKRHHSSSESEESSSDSDSSSSSSSSEYEKHKKS 371
+ A K D + + SS E SD D+S++ S E HK
Sbjct: 59 VQIADVNFQGAKGIDDLSFTVPKQSIESSSPEK----SDVDTSNTRPSVSRELHKDD 111
>gnl|CDD|238643 cd01318, DHOase_IIb, Dihydroorotase (DHOase), subgroup IIb; DHOases
catalyze the reversible interconversion of carbamoyl
aspartate to dihydroorotate, a key reaction in
pyrimidine biosynthesis. This group contains the archeal
members of the DHOase family.
Length = 361
Score = 29.6 bits (67), Expect = 5.5
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 434 TSEEDSYKKRKKHGKKSLWVDVGLNFG 460
T+ ++ ++ + VD GL FG
Sbjct: 51 TTTAEALYEKLRLAAAKSVVDYGLYFG 77
Score = 29.6 bits (67), Expect = 5.5
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 554 TSEEDSYKKRKKHGKKSLWVDVGLNFG 580
T+ ++ ++ + VD GL FG
Sbjct: 51 TTTAEALYEKLRLAAAKSVVDYGLYFG 77
>gnl|CDD|220815 pfam10577, UPF0560, Uncharacterized protein family UPF0560. This
family of proteins has no known function.
Length = 805
Score = 29.8 bits (67), Expect = 5.7
Identities = 35/179 (19%), Positives = 54/179 (30%), Gaps = 8/179 (4%)
Query: 249 KSRSRHYSDSDSEGDDRYKQKSNKKYDSNQKHTSTQERKKYSTKSRDSSSSSSSSEYEKH 308
K R RH S D K + S+ ST S D + S +
Sbjct: 304 KPRQRHRKLQLSSALDVSK-RDQATSMSHINLISTHLEMVSSAGEADMHTPMLKSAFSSS 362
Query: 309 KKSSKHDKHASKYENKKKQSDSREKSRKNKKRHHSSSESEESSSDSDSSSSS------SS 362
+ + ++ + K Q +S K + E S +++ SS
Sbjct: 363 RDFTSSEELLAHKAEDKSQLPQSGESFPLKASRSGEQKEEYSKLETEEYRRGYGTVESSS 422
Query: 363 SEYEKHKKSSKHDKHASKYENIKKQSDSREKRRKNKKRHHSSSESEDS-SSDSSDGEKR 420
E + + H S + Q S K +K S S D S S D +R
Sbjct: 423 LENHRDSFGLANQNHYSAPPTVSIQPPSGPVPPKPEKEVLSDSRPPDYLMSRSVDHLER 481
>gnl|CDD|219061 pfam06495, Transformer, Fruit fly transformer protein. This family
consists of transformer proteins from several Drosophila
species and also from Ceratitis capitata (Mediterranean
fruit fly). The transformer locus (tra) produces an RNA
processing protein that alternatively splices the
doublesex pre-mRNA in the sex determination hierarchy of
Drosophila melanogaster.
Length = 182
Score = 28.9 bits (64), Expect = 6.0
Identities = 21/102 (20%), Positives = 42/102 (41%)
Query: 329 DSREKSRKNKKRHHSSSESEESSSDSDSSSSSSSSEYEKHKKSSKHDKHASKYENIKKQS 388
D+R SRK +K + + E E + + S + + S+ ++ ++ S
Sbjct: 12 DTRRDSRKKEKIPYFADEVRERDRVRNLRQRKTQSTRPTTSHRGRRTRSRSRSQSAERNS 71
Query: 389 DSREKRRKNKKRHHSSSESEDSSSDSSDGEKRKRHKKSKKKK 430
R R +++ R+ S S +SS R R + S+ +
Sbjct: 72 CQRRHRSRSRSRNRSDSRHRSTSSTERRRRSRSRSRYSRTPR 113
>gnl|CDD|227862 COG5575, ORC2, Origin recognition complex, subunit 2 [DNA
replication, recombination, and repair].
Length = 535
Score = 29.7 bits (66), Expect = 6.1
Identities = 33/169 (19%), Positives = 54/169 (31%), Gaps = 5/169 (2%)
Query: 285 ERKKYSTKSRDSSSSSSSSEYEKHKKSSKHDKHASKYENKKKQSDSREKSRKNKKRHHSS 344
E + K S+ + ++ H +K K +S R + R +RH
Sbjct: 39 ENVSSTPKKGVLEDPSTLTPEVVTPRTPGHRIIKAKGAYTKDRSAKRRRGRIEIERHLLG 98
Query: 345 SESEESSSDSDSSSSSSSSEYEKHKKSSKHDKHASKYENIKKQSDSREKRRKNKKRHHSS 404
+ S+S S E E S + + + N Q S EK K R SS
Sbjct: 99 EFDDNVGSNSLLDVPLYSLEAEPLSPSVMLEDESMEGINQSPQGISVEKLGKEDNRSRSS 158
Query: 405 SESEDSSSDSSDGEKRKRHKKSKKKKTS---DTSEE--DSYKKRKKHGK 448
+ + S E +S + +E D + +RK
Sbjct: 159 TPASPSLESHEFSESEAGLSQSNGFEARSHGTGFDEYFDKFSQRKTSSN 207
>gnl|CDD|240433 PTZ00482, PTZ00482, membrane-attack complex/perforin (MACPF)
Superfamily; Provisional.
Length = 844
Score = 29.4 bits (66), Expect = 6.2
Identities = 26/153 (16%), Positives = 56/153 (36%), Gaps = 18/153 (11%)
Query: 291 TKSRDSSSSSSSSEYEKHKKSSKHDKHASKYENKKKQSDSREKSRKNKKRHHSSSESEES 350
+ +++S SS++ + S E + D+ ++ ++ +S S
Sbjct: 103 DDAGNATSGESSTDDD------------SLLELPDRDEDADTQANNDQTNDFDQDDSSNS 150
Query: 351 SSDSDSSSSSSSSEYEKHKKSSKHDKHASKYENIKKQSDSREKRRKNKKRHHSSSESEDS 410
+D S + S EK + K EN K + + + S+S D
Sbjct: 151 QTDQGLKQSVNLSSAEKLIEEKKGQT-----ENTFKFYNFGNDGEEAAAKDGGKSKSSDP 205
Query: 411 SS-DSSDGEKRKRHKKSKKKKTSDTSEEDSYKK 442
+ SDG+ +S ++ + ++ +Y K
Sbjct: 206 GPLNDSDGQGDDGDPESAEEDKAASNTRAAYTK 238
>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3. This
protein, which interacts with both microtubules and
TRAF3 (tumour necrosis factor receptor-associated factor
3), is conserved from worms to humans. The N-terminal
region is the microtubule binding domain and is
well-conserved; the C-terminal 100 residues, also
well-conserved, constitute the coiled-coil region which
binds to TRAF3. The central region of the protein is
rich in lysine and glutamic acid and carries KKE motifs
which may also be necessary for tubulin-binding, but
this region is the least well-conserved.
Length = 506
Score = 29.5 bits (66), Expect = 6.4
Identities = 24/132 (18%), Positives = 43/132 (32%)
Query: 306 EKHKKSSKHDKHASKYENKKKQSDSREKSRKNKKRHHSSSESEESSSDSDSSSSSSSSEY 365
K + K E+ K++ +E+ ++ KK+ + E +
Sbjct: 85 SKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPK 144
Query: 366 EKHKKSSKHDKHASKYENIKKQSDSREKRRKNKKRHHSSSESEDSSSDSSDGEKRKRHKK 425
EK K+ K + E KK+ R K R K + + + R
Sbjct: 145 EKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREAV 204
Query: 426 SKKKKTSDTSEE 437
K + D +EE
Sbjct: 205 KGKPEEPDVNEE 216
>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27. This protein forms
the C subunit of DNA polymerase delta. It carries the
essential residues for binding to the Pol1 subunit of
polymerase alpha, from residues 293-332, which are
characterized by the motif D--G--VT, referred to as the
DPIM motif. The first 160 residues of the protein form
the minimal domain for binding to the B subunit, Cdc1,
of polymerase delta, the final 10 C-terminal residues,
362-372, being the DNA sliding clamp, PCNA, binding
motif.
Length = 427
Score = 29.4 bits (66), Expect = 6.5
Identities = 28/144 (19%), Positives = 54/144 (37%), Gaps = 6/144 (4%)
Query: 306 EKHKKSSKHDKHASKYENKKKQSDSREKSRKNKKRHHSSSESEESSSDSDSSSSSSSSEY 365
K K ++ KK D+ K +K +S S + S+ S +
Sbjct: 163 PSSKPPKSIMSPEVKVKSAKKTQDTS-KETTTEKTEGKTSVKAASLKRNPPKKSNIMSSF 221
Query: 366 EKHKKSSKHDKHASKYENIKKQSDSREKRRKNKKRHHSSSESEDSSSDSSDGEKRKRHKK 425
K K K +K + +K++S+ ++ KR + + + E K
Sbjct: 222 FKKKTKEKKEKKEASESTVKEESEE-----ESGKRDVILEDESAEPTGLDEDEDEDEPKP 276
Query: 426 SKKKKTSDTSEEDSYKKRKKHGKK 449
S ++ S+ E+ K+++K KK
Sbjct: 277 SGERSDSEEETEEKEKEKRKRLKK 300
>gnl|CDD|219355 pfam07267, Nucleo_P87, Nucleopolyhedrovirus capsid protein P87.
This family consists of several Nucleopolyhedrovirus
capsid protein P87 sequences. P87 is expressed late in
infection and concentrated in infected cell nuclei.
Length = 606
Score = 29.5 bits (66), Expect = 6.9
Identities = 11/50 (22%), Positives = 18/50 (36%)
Query: 324 KKKQSDSREKSRKNKKRHHSSSESEESSSDSDSSSSSSSSEYEKHKKSSK 373
S + +KR E SS + + S +YEK +K +
Sbjct: 344 DSDSEASDSGPTRKRKRRRVPPLPEYSSDEDEDDSDEDEVDYEKERKRRR 393
>gnl|CDD|112562 pfam03753, HHV6-IE, Human herpesvirus 6 immediate early protein.
The proteins in this family are poorly characterized,
but an investigation has indicated that the immediate
early protein is required the down-regulation of MHC
class I expression in dendritic cells. Human herpesvirus
6 immediate early protein is also referred to as U90.
Length = 993
Score = 29.3 bits (65), Expect = 7.0
Identities = 31/152 (20%), Positives = 57/152 (37%), Gaps = 12/152 (7%)
Query: 256 SDSDSEGDDRYKQKSNKKYDSNQKH-TSTQERKKYSTKSRDSSSSSSSSEYEKHKKSSKH 314
S+SD+ + Y + +N H +T E +S + + S + K K
Sbjct: 594 SESDNNDEIDYIASVDSGNRTNNIHMNNTNENTPFSKSGKSPPEVTPSKTFYKRDK---- 649
Query: 315 DKHASKYENKKKQSDSREKSRKNKKRHHSSSESEESSSDSDSSSSSSSSEYEKHKKSSKH 374
K K K+ ++ K+ K +S+ +D++ SS SE E +
Sbjct: 650 -KKDISTNRKVKKRTAKRKTVGYKTDKSKKIKSDSLPTDTNVIVISSESEDE------ED 702
Query: 375 DKHASKYENIKKQSDSREKRRKNKKRHHSSSE 406
+ K +KK+ S K + + +SE
Sbjct: 703 GFNIIKKSQLKKKIKSELKSESSSESDDCTSE 734
>gnl|CDD|191716 pfam07263, DMP1, Dentin matrix protein 1 (DMP1). This family
consists of several mammalian dentin matrix protein 1
(DMP1) sequences. The dentin matrix acidic
phosphoprotein 1 (DMP1) gene has been mapped to human
chromosome 4q21. DMP1 is a bone and teeth specific
protein initially identified from mineralised dentin.
DMP1 is primarily localised in the nuclear compartment
of undifferentiated osteoblasts. In the nucleus, DMP1
acts as a transcriptional component for activation of
osteoblast-specific genes like osteocalcin. During the
early phase of osteoblast maturation, Ca(2+) surges into
the nucleus from the cytoplasm, triggering the
phosphorylation of DMP1 by a nuclear isoform of casein
kinase II. This phosphorylated DMP1 is then exported out
into the extracellular matrix, where it regulates
nucleation of hydroxyapatite. DMP1 is a unique molecule
that initiates osteoblast differentiation by
transcription in the nucleus and orchestrates
mineralised matrix formation extracellularly, at later
stages of osteoblast maturation. The DMP1 gene has been
found to be ectopically expressed in lung cancer
although the reason for this is unknown.
Length = 514
Score = 29.2 bits (65), Expect = 7.9
Identities = 48/218 (22%), Positives = 91/218 (41%), Gaps = 8/218 (3%)
Query: 196 SKQESSRSRRDYQERKRKDSDSEERHQTSHSTSKDKYEFRSHHREKEYKFVSHKSRSRHY 255
S++ +SR ++ + + DS S ST H E + S +++S+
Sbjct: 265 SRKFFRKSRISEEDGRGELDDSNTMEVKSDSTENAGLSQSREHSRSESQEDSEENQSQED 324
Query: 256 SDSDSEGDDRYKQKSNKKYDSNQKHTSTQERKKYSTKSRDSSSSSSSSEYEKHKKSSKHD 315
S E D + S + +Q+++S + + S D+ +++S ++ S +
Sbjct: 325 S---QEVQDPSSESSQEADLPSQENSSESQEEVVSESRGDNPDNTTSHSEDQEDSESSEE 381
Query: 316 KHASKYENKKKQSDSREKSRKNKKRHHSSSESEESSSDSDSSS-----SSSSSEYEKHKK 370
+ + QS + ++ + SS ES ES+ D +SSS S S+S + ++
Sbjct: 382 DSLDTPSSSESQSTEEQADSESNESLSSSEESPESTEDENSSSQEGLQSHSASTESRSQE 441
Query: 371 SSKHDKHASKYENIKKQSDSREKRRKNKKRHHSSSESE 408
S S+ ++ Q SR K N SSSE +
Sbjct: 442 SQSEQDSRSEEDDSDSQDSSRSKEDSNSTESASSSEED 479
>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional.
Length = 746
Score = 29.3 bits (66), Expect = 8.4
Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 490 KSSKHDKHASKYENKKKKSDSGEK-SRKNKKRHHSSSESEESSSDSSDEEKRKRHK-KSK 547
KS + + + + N +++G K +++ +K + S+E E+ S + +K K K K
Sbjct: 212 KSKEININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKDL 271
Query: 548 KKK 550
K+K
Sbjct: 272 KEK 274
>gnl|CDD|237178 PRK12705, PRK12705, hypothetical protein; Provisional.
Length = 508
Score = 28.9 bits (65), Expect = 9.0
Identities = 19/113 (16%), Positives = 43/113 (38%), Gaps = 3/113 (2%)
Query: 80 ESLLLRVTQSEYDKNSRVINMNKYEE--YKEKDAKQSNIEKVKDKSENNHRGEQHEKQYS 137
E LL Q + + + EE ++++ + EK+ + E+
Sbjct: 59 ELLLRERNQQRQEARREREELQREEERLVQKEEQLDARAEKLDNLENQLEEREKALSARE 118
Query: 138 KYRNSSDSEYEEK-KMKPYKTNELLSRVILRNSDSEYEEKKMKQYKTNEPRSQ 189
+ + + + T E +++L+ D+E EE+K ++ K E +
Sbjct: 119 LELEELEKQLDNELYRVAGLTPEQARKLLLKLLDAELEEEKAQRVKKIEEEAD 171
>gnl|CDD|222447 pfam13904, DUF4207, Domain of unknown function (DUF4207). This
family is found in eukaryotes; it has several conserved
tryptophan residues. The function is not known.
Length = 261
Score = 28.5 bits (64), Expect = 9.3
Identities = 34/152 (22%), Positives = 62/152 (40%), Gaps = 4/152 (2%)
Query: 293 SRDSSSSSSSSEYEKHKKSSKHDKHASKYENKKKQSDSREKSRKNKKRHHSSSESEESSS 352
DS+ S S + SS + E+ SD E + ++ +S SS+
Sbjct: 3 CSDSTRSLLSPLGNELSPSSSDETEDCSEESTDSWSDMYEGLKDSESSSNSVPSLSLSST 62
Query: 353 DSDSSSSSSSSEYEKHKKSSKHDKHASKYENIKKQSDSREKRRKNKKRHHSSSESEDSSS 412
S S SS+ S K K + + A YEN S + +R+K ++ + ++
Sbjct: 63 ASSLSDSSTYSRSLKEVKLERQAQEA--YENWL--SAKQAQRQKKLQKLLEEKQKQEREK 118
Query: 413 DSSDGEKRKRHKKSKKKKTSDTSEEDSYKKRK 444
+ + E R+R K K ++ + + K+R
Sbjct: 119 EREEAELRQRLAKEKYEEWCRQKAQQAAKQRT 150
>gnl|CDD|236944 PRK11642, PRK11642, exoribonuclease R; Provisional.
Length = 813
Score = 28.9 bits (65), Expect = 9.5
Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 503 NKKKKSDSGEKS---RKNKKRHHSSSESEESSSDSSDEEKRKRHKKSKKKKTSDTSEEDS 559
K KK D+G+K R+ K+ + +S + + K+ + KK ++ T + +
Sbjct: 740 EKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKAKPKAAKKDARKAKKPSAKTQKIAA 799
Query: 560 YKKRKKHGKKS 570
K K+ KK
Sbjct: 800 ATKAKRAAKKK 810
>gnl|CDD|222914 PHA02666, PHA02666, hypothetical protein; Provisional.
Length = 287
Score = 28.7 bits (63), Expect = 9.9
Identities = 22/127 (17%), Positives = 46/127 (36%)
Query: 368 HKKSSKHDKHASKYENIKKQSDSREKRRKNKKRHHSSSESEDSSSDSSDGEKRKRHKKSK 427
H+ H + A+ E+ +K SR+ R + +SS + ++++ S K+ K S
Sbjct: 25 HESCFHHRRRANSMESRRKSRPSRQHRSAERTPTTASSLTHENNTAPSRHGKQHSCKASS 84
Query: 428 KKKTSDTSEEDSYKKRKKHGKKSLWVDVGLNFGLGARVLQINTSVDAQILSSSSSSEYEK 487
+ + S S+ G + + S + + E E+
Sbjct: 85 RSSHNRGSTSSSHNHHAHRGPHQSAHRRSKHDAVRDTYQPCPQSPETDLYKGRLPGETER 144
Query: 488 HKKSSKH 494
H ++ H
Sbjct: 145 HYETPDH 151
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.299 0.115 0.300
Gapped
Lambda K H
0.267 0.0563 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 27,451,035
Number of extensions: 2463420
Number of successful extensions: 7438
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4992
Number of HSP's successfully gapped: 859
Length of query: 624
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 521
Effective length of database: 6,369,140
Effective search space: 3318321940
Effective search space used: 3318321940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.7 bits)
S2: 62 (28.0 bits)