RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4064
(624 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.5 bits (91), Expect = 0.004
Identities = 37/231 (16%), Positives = 65/231 (28%), Gaps = 73/231 (31%)
Query: 12 LGADKSATQITTSKSNTNPEEAKLVKNCCVKITGGMFKNNYGKLESFNEDSGRVVVKLAL 71
+ DK T I +S + P E ++ + +L F
Sbjct: 350 VNCDKLTTIIESSLNVLEPAE---------------YRKMFDRLSVFPPS---------- 384
Query: 72 GDEHVTVVESLLLRV-TQSEYDKNSRVINMNKYEEYK--EKDAKQSNIE------KVKDK 122
+ LL + V +NK +Y EK K+S I ++K K
Sbjct: 385 ----AHIPTILLSLIWFDVIKSDVMVV--VNKLHKYSLVEKQPKESTISIPSIYLELKVK 438
Query: 123 SENNHRGEQHEK---QYSKYRNSSDSE---------------YEEKKMKPYKTNELLSRV 164
EN H Y+ + + + K ++ + L V
Sbjct: 439 LEN--EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV 496
Query: 165 ILRNSDSEYEEKKMKQYKTNEPRSQ---------NKHEQY-SKQESSRSRR 205
L D + E+K++ T S ++ Y + R
Sbjct: 497 FL---DFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERL 544
Score = 33.3 bits (75), Expect = 0.30
Identities = 80/551 (14%), Positives = 158/551 (28%), Gaps = 148/551 (26%)
Query: 130 EQHEKQYSKYRNSSD--SEYEEKKMKPYKTNEL--LSRVILRNSDSEYEEKKMKQYKTNE 185
E E QY +Y+ D S +E+ + + ++ + + IL S E + + K
Sbjct: 10 ETGEHQY-QYK---DILSVFEDAFVDNFDCKDVQDMPKSIL--SKEEIDH--IIMSKDAV 61
Query: 186 PRS--------QNKHEQYSKQESSRSRRDY-------QERKRKDSDSEERHQTSHS-TSK 229
+ + E K R +Y + +R+ S +
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121
Query: 230 DKYEFRSHH--REKEYKFVSHKSRSRHYSDSDSEG--------------------DDRYK 267
D F ++ R + Y K R ++ + +
Sbjct: 122 DNQVFAKYNVSRLQPY----LKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ 177
Query: 268 QK-SNKKY--DSNQKHTSTQERKKYSTKSRDSSSSSSSSEYEKHKKSSKHDKHASKYENK 324
K K + + ++ + + +S H + K H+ + E +
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS--RSDHSSNIKLRIHSIQAELR 235
Query: 325 KKQSDSREKSRKNKK-----RHHSSSESEES-------------SSDSDSSSSSSSSEY- 365
+ KS+ + + ++++ + +D S+++++
Sbjct: 236 RLL-----KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS 290
Query: 366 -EKHKKSSKHDKHA---SKYENIKKQSDSREKRRKNKKRHHSSSESEDSSSDSSDGEKR- 420
+ H + D+ KY + + Q RE N +R +ES DG
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES------IRDGLATW 344
Query: 421 ---KRHKKSKKKKTSDTS----EEDSYKKRKKHGKKSLWV---DVGLNFGLGARVLQI-- 468
K K ++S E Y+K L V + +L +
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD----RLSVFPPSAHIP----TILLSLIW 396
Query: 469 ---NTSVDAQILSS-SSSSEYEKHKKSSKHDKHASKYENKKKKSDSGEKSRKNKKRHHSS 524
S +++ S EK K S S Y K K + N+ H S
Sbjct: 397 FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP-SIYLELKVKLE-------NEYALHRS 448
Query: 525 SESEESSSDSSDEEKRKRHKKSKKKKTSDTSEEDSY---------KKRKKHGKKSLWVDV 575
+ K D Y K + + +L+ V
Sbjct: 449 I-----------VDHYNIPKTFDSDDLIP-PYLDQYFYSHIGHHLKNIEHPERMTLFRMV 496
Query: 576 GLNFG-LGARV 585
L+F L ++
Sbjct: 497 FLDFRFLEQKI 507
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 34.4 bits (78), Expect = 0.069
Identities = 13/76 (17%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 372 SKHDKHASKYENIKKQSDSREKRRKNKKRHHSSSES---EDSSSDSSDGEKRKRHKKSKK 428
++ D+ + E+I+K + + KR + E E + D + +R+ + K
Sbjct: 75 AQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKN 134
Query: 429 KKTSDTSEEDSYKKRK 444
K + +++ Y++
Sbjct: 135 KINNRIADKAFYQQPD 150
Score = 29.4 bits (65), Expect = 2.7
Identities = 11/65 (16%), Positives = 29/65 (44%), Gaps = 9/65 (13%)
Query: 502 ENKK--KKSDSGEKSRKNKKRHHSSSESEESSSDSSDEEKRKRHKKSKKKKTSDTSEEDS 559
E +K ++ D+ K + + R E++ D + +R+ + K K + +++
Sbjct: 93 EQRKRLQELDAASKVMEQEWR-------EKAKKDLEEWNQRQSEQVEKNKINNRIADKAF 145
Query: 560 YKKRK 564
Y++
Sbjct: 146 YQQPD 150
Score = 27.8 bits (61), Expect = 8.8
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 6/58 (10%)
Query: 199 ESSRS-RRDYQER-KRKDSDSEERHQ-TSHSTSKDKYEFRSHHREKEYKFVSHKSRSR 253
ES R R + ++R + D+ S+ Q KD E+ E+ K +K +R
Sbjct: 85 ESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEK---NKINNR 139
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA
dependent ATPase, RNA helicase; HET: ANP; 1.91A
{Saccharomyces cerevisiae S288C}
Length = 579
Score = 34.8 bits (80), Expect = 0.10
Identities = 23/192 (11%), Positives = 60/192 (31%), Gaps = 7/192 (3%)
Query: 80 ESLLLRVTQSEYD-----KNSRVINMNKYEEYKEKDAKQSNIEKVKDKSENNHRGEQHEK 134
S+L + + E ++++ I + K E+Y+ + +S + + + + +
Sbjct: 390 SSVLF-ICKDELPFVRELEDAKNIVIAKQEKYEPSEEIKSEVLEAVTEEPEDIS-DIVIS 447
Query: 135 QYSKYRNSSDSEYEEKKMKPYKTNELLSRVILRNSDSEYEEKKMKQYKTNEPRSQNKHEQ 194
S YR+ ++ + ++ ++ K
Sbjct: 448 LISSYRSCIKEYRFSERRILPEIASTYGVLLNDPQLKIPVSRRFLDKLGLSRSPIGKAMF 507
Query: 195 YSKQESSRSRRDYQERKRKDSDSEERHQTSHSTSKDKYEFRSHHREKEYKFVSHKSRSRH 254
+ SSR + DS+ R +++ ++ + SRS
Sbjct: 508 EIRDYSSRDGNNKSYDYDDDSEISFRGNKNYNNRSQNRDYDDEPFRRSNNNRRSFSRSND 567
Query: 255 YSDSDSEGDDRY 266
++ S + Y
Sbjct: 568 KNNYSSRNSNIY 579
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB
tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A
{Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Length = 416
Score = 34.3 bits (78), Expect = 0.10
Identities = 14/115 (12%), Positives = 44/115 (38%), Gaps = 4/115 (3%)
Query: 316 KHASKYENKKKQSDSREKSRKNKKRHHSSSESEESSSDSDSSSSSSSSEYEKHKKSSKHD 375
+ A ++ + +Q + R+ + + + ++ ++ S + +E S +
Sbjct: 30 EFALQHFTRLQQENERKGAARFGHEGRTWGDAGAAAGGGIPSKGVNFAEEPMRSDSENGE 89
Query: 376 KHASKYENIKKQSDSREKRRKNKKRHHSSSESEDSSSDSSDGEKRKRHKKSKKKK 430
+ E + + + + +R +E+ + + D E R H K+ ++
Sbjct: 90 E----EEAAEAGAFNAPVINRFTRRASVCAEAYNPDEEEDDAESRIIHPKTDDQR 140
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics,
tubercidin, structu genomics, structural genomics
consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB:
4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A*
3qow_A* 3qox_A* 4er3_A* 3sr4_A*
Length = 438
Score = 32.5 bits (73), Expect = 0.40
Identities = 17/104 (16%), Positives = 34/104 (32%), Gaps = 4/104 (3%)
Query: 323 NKKKQSDSREKSRKNKKRHHSSSESEESSSDSDSSSSSSSSEYEKHKKSSKHDKHASKYE 382
++ + + K R + +S S++++ + E S E
Sbjct: 336 DRTILENYFSSLKNPKLREEQEAARRRQQRESKSNAATPTKGPEGKVAGPADAPMDSGAE 395
Query: 383 NIKKQSDSREKRRKNKKRHHSSSESEDSSSDSSDGEKRKRHKKS 426
K + + +K +K R + + G KR R KK
Sbjct: 396 EEKAGAATVKKPSPSKARK----KKLNKKGRKMAGRKRGRPKKM 435
Score = 29.4 bits (65), Expect = 3.5
Identities = 14/99 (14%), Positives = 36/99 (36%), Gaps = 6/99 (6%)
Query: 308 HKKSSKHDKHASKYENKKKQSDSREKSRKNKKRHHSSSESEESSSDSDSSSSSSSSEYEK 367
+ + +++Q +R + ++ K + ++ + + + S E+
Sbjct: 337 RTILENYFSSLKNPKLREEQEAARRRQQRESKSNAATPTKGPEGKVAGPADAPMDSGAEE 396
Query: 368 HKKSSKHDKHASKYENIKKQSDSR------EKRRKNKKR 400
K + K S + KK+ + + KR + KK
Sbjct: 397 EKAGAATVKKPSPSKARKKKLNKKGRKMAGRKRGRPKKM 435
>3p8b_B Transcription antitermination protein NUSG; transcription
elongation factor, RNA polymerase, transferase
transcription complex; 1.80A {Pyrococcus furiosus} PDB:
3qqc_D
Length = 152
Score = 31.3 bits (71), Expect = 0.48
Identities = 11/40 (27%), Positives = 17/40 (42%)
Query: 30 PEEAKLVKNCCVKITGGMFKNNYGKLESFNEDSGRVVVKL 69
P + L V++ G FK K+ +E VVV+
Sbjct: 87 PAVSGLEPGDLVEVIAGPFKGQKAKVVKIDESKDEVVVQF 126
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 32.2 bits (73), Expect = 0.49
Identities = 20/107 (18%), Positives = 43/107 (40%), Gaps = 1/107 (0%)
Query: 332 EKSRKNKKRHHSSSESEESSSDSDSSSSSSSSEYEKHKKSSKHDKHASKYENIKKQSDSR 391
E+ + + + ++ + S++ ++ + + KK SK A + E K+ S
Sbjct: 5 EEVAASGSHLNGDLDPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASV 64
Query: 392 EKRRKNKKRHHSSSESEDSSSDSSDGE-KRKRHKKSKKKKTSDTSEE 437
++ + +R + D + DG+ KK KKKK +
Sbjct: 65 DEVARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKRGPKV 111
Score = 29.9 bits (67), Expect = 2.7
Identities = 17/84 (20%), Positives = 31/84 (36%)
Query: 474 AQILSSSSSSEYEKHKKSSKHDKHASKYENKKKKSDSGEKSRKNKKRHHSSSESEESSSD 533
A ++ + K KKS + +K+ + E +R+ ++ E +E D
Sbjct: 28 ASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDEVARQLERSALEDKERDEDDED 87
Query: 534 SSDEEKRKRHKKSKKKKTSDTSEE 557
+ KK KKKK +
Sbjct: 88 GDGDGDGATGKKKKKKKKKRGPKV 111
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 31.7 bits (72), Expect = 0.86
Identities = 48/345 (13%), Positives = 121/345 (35%), Gaps = 36/345 (10%)
Query: 100 MNKYEEYKEKDAKQSNIEKVKDKSENNHRGEQHEKQYSKYRNSSDSEYEEKKMKPYKTNE 159
+ + +E AK +++ K+ R ++ E + + EEK +
Sbjct: 850 LKVTRQEEEMQAKDEELQRTKE------RQQKAEAELKELEQKHTQLCEEKNL------- 896
Query: 160 LLSRVILRNSDSEYEEKKMKQYKTNEPRSQNKHEQYSKQESSRSRRDYQERKRKDSDSEE 219
+ +E E + ++ + + E + +ER ++ ++
Sbjct: 897 -----LQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKK 951
Query: 220 RHQTSHSTSKDKYEFRSHHREK-EYKFVSHKSRSRHYSDSDSEGDDRYKQKSNKKYDSNQ 278
+ Q +++ E R+K + + V+ + + D +D+ +
Sbjct: 952 KMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNK---------- 1001
Query: 279 KHTSTQERKKYSTKSRDSSSSSSSSEYEKHKKSSKHDKHASKYENKKKQSDSREKSRKNK 338
T+ERK + D +++ + E + + +KH S + + EKSR+
Sbjct: 1002 ---LTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQEL 1058
Query: 339 KRHHSSSESEESSSDSDSSSSSSSSEYEKHKKSSKHDKHASKYENIKKQSDSREKRRKNK 398
++ E E SD + + + + ++ K + + + + ++ N
Sbjct: 1059 EKIKRKLEGES----SDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNA 1114
Query: 399 KRHHSSSESEDSSSDSSDGEKRKRHKKSKKKKTSDTSEEDSYKKR 443
+ ES S ++ K++K+K + E ++ K
Sbjct: 1115 LKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTE 1159
>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear
protein; 1.45A {Homo sapiens}
Length = 127
Score = 29.9 bits (67), Expect = 0.95
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 41 VKITGGMFKNNYGKLESFNEDSGRVVVKLALGDEHVTVVESL 82
+ + G ++ N G LES NE + + + G VE +
Sbjct: 77 ILVLNGGYRGNEGTLESINEKTFSATIVIETGPLKGRRVEGI 118
>2guf_A Vitamin B12 transporter BTUB; beta barrel, cubic mesophase,
cobalamin, colicin, TRAN protein; HET: MPG; 1.95A
{Escherichia coli} SCOP: f.4.3.3 PDB: 1nqg_A* 1nqh_A*
1ujw_A* 1nqe_A* 2ysu_A 3m8b_A* 3m8d_A* 3rgm_A* 3rgn_A*
2gsk_A* 1nqf_A*
Length = 594
Score = 31.3 bits (71), Expect = 1.2
Identities = 22/169 (13%), Positives = 51/169 (30%), Gaps = 3/169 (1%)
Query: 206 DYQERKRKDSDSEERHQTSHSTSKDKYEFRSHHREKEYKFVSHKSR--SRHYSDSDSEGD 263
DY D + T T D + ++ + E+ F S + D+ + D
Sbjct: 171 DYAHTHGYDVVAYGNTGTQAQTDNDGFLSKTLYGALEHNFTDAWSGFVRGYGYDNRTNYD 230
Query: 264 DRYKQKSNKKYDSNQKHTSTQERKKYSTKSRDSSSSSSSSEYEKHKKSSKHDKH-ASKYE 322
Y S S +Y+ + S +S S + + + ++ +S
Sbjct: 231 AYYSPGSPLLDTRKLYSQSWDAGLRYNGELIKSQLITSYSHSKDYNYDPHYGRYDSSATL 290
Query: 323 NKKKQSDSREKSRKNKKRHHSSSESEESSSDSDSSSSSSSSEYEKHKKS 371
++ KQ + + + + + + Y++
Sbjct: 291 DEMKQYTVQWANNVIVGHGSIGAGVDWQKQTTTPGTGYVEDGYDQRNTG 339
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 30.3 bits (67), Expect = 2.0
Identities = 19/270 (7%), Positives = 68/270 (25%), Gaps = 11/270 (4%)
Query: 71 LGDEHVTVVESLLLRVTQSEYDKNSRVINMNKYEEYKEKDAKQSNIEKVKDKSENNHRGE 130
+ + + + + Q + + + + ++
Sbjct: 312 MENAVLALAQIENSAAVQKAIAHYEQQMGQKVQLPTESLQELLDLHRDSEREAIEVFIRS 371
Query: 131 QHEKQYSKYRNSSDSEYEEKKMKPYKTNELLSRVILRNSDSEYEEKKMKQYKTNEPRSQN 190
+ ++ ++ E+K+ K N+ S ++ K
Sbjct: 372 SFKDVDHLFQKELAAQLEKKRDDFCKQNQEASSDRCSGLLQVIFSPLEEEVKAGIYSKPG 431
Query: 191 KHEQYSKQESSRSRRDYQERKRKDSDSEERHQTSHSTSKDKYEFRSHHREKEYKFVSHKS 250
+ + Q+ ++ Y E RK +EE Q + +
Sbjct: 432 GYRLF-VQKLQDLKKKYYEEPRKGIQAEEILQ----------TYLKSKESMTDAILQTDQ 480
Query: 251 RSRHYSDSDSEGDDRYKQKSNKKYDSNQKHTSTQERKKYSTKSRDSSSSSSSSEYEKHKK 310
+ + ++ ++ + +S + + E +
Sbjct: 481 TLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRV 540
Query: 311 SSKHDKHASKYENKKKQSDSREKSRKNKKR 340
++ + ++Q ++ + + R
Sbjct: 541 QLLKEQERTLALKLQEQEQLLKEGFQKESR 570
>3few_X Colicin S4; cell lysis, Y-RAY, cell killing, immune system; 2.45A
{Escherichia coli}
Length = 505
Score = 30.3 bits (67), Expect = 2.3
Identities = 23/192 (11%), Positives = 60/192 (31%), Gaps = 12/192 (6%)
Query: 152 MKPYKTNELLSRVILRNSDSEYEEKKMKQYKTNEPRSQNKHE-----QYSKQESSRSRRD 206
++PY +E I+ + + E+ + N+ SQ + + + + + R
Sbjct: 155 VRPYVGSEKAKAGIMEKINHKTPEEIYEALGFNKDESQRQEKAKQQAEDAWDRLPPNVRK 214
Query: 207 YQERKRKDSDSEERHQTSHSTSKDKYEFRSHH-----REKEYKFVSHKSRSRHYSDSDSE 261
+ + + S + R + + V HK+ Y
Sbjct: 215 FDVDVEQFHYLVVLDDYGNVLSVTRTGVRPYVGSEKAKAGIMDKVDHKTPEEIYEALGFN 274
Query: 262 GDDRYKQKSNKKYDSNQKHTSTQERKKYSTKSRDSSSSSSSSEYEK--HKKSSKHDKHAS 319
++ +Q KK + ++ + R + + + ++ S K + A
Sbjct: 275 NEEPQRQNQAKKAAYDVFYSFSMNRDRIQSDVLNKAAEVISDIGNKVGDYLGDAYKSLAR 334
Query: 320 KYENKKKQSDSR 331
+ + K +
Sbjct: 335 EIADDVKNFQGK 346
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin
binding, masking, regulation, SELF-inhibition, cell A
membrane protein; 2.10A {Spodoptera frugiperda} PDB:
2i1k_A 1e5w_A
Length = 575
Score = 29.9 bits (66), Expect = 3.3
Identities = 26/319 (8%), Positives = 98/319 (30%), Gaps = 6/319 (1%)
Query: 80 ESLLLRVTQSEYDKNSRVINMNKYEEYKEKDAKQSNIEKVKDKSENNHRGEQHEKQYSKY 139
+++ + + + ++ ++ + + +Q + Q +
Sbjct: 253 RKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELYMRRRKPDTIDVQQMKAQAREE 312
Query: 140 RNSSDSEYEEKKMK---PYKTNELLSRVILRNSDSEYEEKKMKQYKTNEPRSQNKHEQYS 196
+ + ++ E+ +++ + + R + E ++ + + E+
Sbjct: 313 KLAKQAQREKLQLEIAARERAEKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQL 372
Query: 197 KQESSRSRRDYQERKRKDSDSEERHQTSHSTSKDKYEFRSHHREKEYKFVSHKSRSRHYS 256
+Q + Q + + + +T + + ++ + R K+ + +
Sbjct: 373 RQLQAAKEELEQRQNELQAMMQRLEETKNMEAAERQKLEDEIRAKQEEVSRIQQEVELKD 432
Query: 257 DSDSEGDDRYKQKSNKKYDSNQKHTSTQERKKYSTKSRDSSSSSSSSEYEKHKKSSKHDK 316
+ + K+ ++ + + + R + + + +S D
Sbjct: 433 SETRRLQEEVEDARRKQDEAAAALLAATTPQHHHVAERADTDPDHDNASDAGSESGGGDL 492
Query: 317 HASKYENKKKQSDSREKSRKNKKRHHSSSESEESSSDSDSSSSSSSSEYEKHKKSSKHDK 376
+ +D R + +N++ H+ + + D S + +
Sbjct: 493 ARGPDDLVDPVADRRTLAERNERLHN---QLKALKQDLARSCDETKETAMDKIHRENVRQ 549
Query: 377 HASKYENIKKQSDSREKRR 395
KY+ +++ KRR
Sbjct: 550 GRDKYKTLREIRKGNTKRR 568
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM,
splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo
sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Length = 437
Score = 29.4 bits (65), Expect = 3.6
Identities = 18/198 (9%), Positives = 60/198 (30%), Gaps = 1/198 (0%)
Query: 167 RNSDSEYEEKKMKQYKTNEPRSQNKHEQYSKQESSRSRRDYQERKRKDSDSEERHQTSHS 226
R S +K+ ++ ++ + + K+E RSR +++ R R + +
Sbjct: 241 RRERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRERSKDKDRDRKRRSSRSR-ERA 299
Query: 227 TSKDKYEFRSHHREKEYKFVSHKSRSRHYSDSDSEGDDRYKQKSNKKYDSNQKHTSTQER 286
+ + + + S + E +K + R
Sbjct: 300 RRERERKEELRGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDRERRRSHR 359
Query: 287 KKYSTKSRDSSSSSSSSEYEKHKKSSKHDKHASKYENKKKQSDSREKSRKNKKRHHSSSE 346
+ + E+++ ++ S+ + ++ + + ++ + S
Sbjct: 360 SERERRRDRDRDRDRDREHKRGERGSERGRDEARGGGGGQDNGLEGLGNDSRDMYMESEG 419
Query: 347 SEESSSDSDSSSSSSSSE 364
+ + + ++ E
Sbjct: 420 GDGYLAPENGYLMEAAPE 437
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin
polymerization, protein binding; 2.29A {Homo sapiens}
Length = 279
Score = 28.3 bits (62), Expect = 6.7
Identities = 18/123 (14%), Positives = 34/123 (27%), Gaps = 1/123 (0%)
Query: 294 RDSSSSSSSSEYEKHKKSSKHDKHASKYENKKKQSDSREKSRKNKKRHHSSSESEESSSD 353
D + E +K + K + S S + S S
Sbjct: 158 FDLWKEKMLQDTEDKRKEKRKQKQKNLDRGGSGGSGGSGGSGGSGGSKRHPSTLPVISDA 217
Query: 354 SDSSSSSSSSEYEKHKKSSKHDKHASKYENIKKQSDSREKRRKNKKRHHSSSESEDSSSD 413
+ + K + + +K+E I+ + RR + S +SE D
Sbjct: 218 RSVLLEAIRKGIQLRKVEEQ-REQEAKHERIENDVATILSRRIAVEYSDSEDDSEFDEVD 276
Query: 414 SSD 416
+
Sbjct: 277 WLE 279
>3sbg_A PRE-mRNA-splicing factor 8; PRP8P, rnaseh domain, JAB1/MPN domain;
3.28A {Saccharomyces cerevisiae}
Length = 565
Score = 28.6 bits (63), Expect = 7.3
Identities = 15/76 (19%), Positives = 29/76 (38%)
Query: 240 EKEYKFVSHKSRSRHYSDSDSEGDDRYKQKSNKKYDSNQKHTSTQERKKYSTKSRDSSSS 299
+ E K + + S + + +S K+ D ST + K +
Sbjct: 244 QTEIKDIILGQNIKAPSVKRQKMAELEAARSEKQNDEEAAGASTVMKTKTINAQGEEIVV 303
Query: 300 SSSSEYEKHKKSSKHD 315
+S++YE SSK++
Sbjct: 304 VASADYESQTFSSKNE 319
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC
repeat; 2.70A {Saccharomyces cerevisiae}
Length = 963
Score = 28.6 bits (63), Expect = 8.2
Identities = 17/137 (12%), Positives = 50/137 (36%), Gaps = 6/137 (4%)
Query: 257 DSDSEGDDRYKQKSNKK-----YDSNQKHTSTQERKKYSTKSRDSSSSSSSSEYEKHKKS 311
+ +++ K Y + S +E +K +T S+++ + + +K KK
Sbjct: 773 RGSDQAIPKFQMNCYAKEDAFSYPRMYEEASGKEVEKVATAVL-STTARAKARAKKTKKE 831
Query: 312 SKHDKHASKYENKKKQSDSREKSRKNKKRHHSSSESEESSSDSDSSSSSSSSEYEKHKKS 371
++ K E+++K+ + + K+ + E ++ S + + +
Sbjct: 832 KGPNEEEKKKEHEEKEKERETNKKGIKETKENDEEFYKNKYSSKPYKVDNMTRILPQQSR 891
Query: 372 SKHDKHASKYENIKKQS 388
++ ++K
Sbjct: 892 YISFIKDDRFVPVRKFK 908
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.299 0.115 0.300
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,803,409
Number of extensions: 410584
Number of successful extensions: 1015
Number of sequences better than 10.0: 1
Number of HSP's gapped: 952
Number of HSP's successfully gapped: 135
Length of query: 624
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 525
Effective length of database: 3,937,614
Effective search space: 2067247350
Effective search space used: 2067247350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.7 bits)
S2: 60 (27.6 bits)