RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4064
         (624 letters)



>d1nz9a_ b.34.5.4 (A:) N-utilization substance G protein NusG,
          C-terminal domain {Thermus thermophilus [TaxId: 274]}
          Length = 58

 Score = 27.6 bits (62), Expect = 0.68
 Identities = 8/27 (29%), Positives = 14/27 (51%)

Query: 41 VKITGGMFKNNYGKLESFNEDSGRVVV 67
          V++  G F +  G +   N + G+V V
Sbjct: 11 VRVVSGPFADFTGTVTEINPERGKVKV 37


>d2zkmx4 c.1.18.1 (X:312-660) Phospholipase C-beta-2 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 349

 Score = 30.0 bits (67), Expect = 0.74
 Identities = 18/127 (14%), Positives = 36/127 (28%)

Query: 323 NKKKQSDSREKSRKNKKRHHSSSESEESSSDSDSSSSSSSSEYEKHKKSSKHDKHASKYE 382
             KK   S   S        +   S  S+    +    +  E E+ ++  + +      E
Sbjct: 150 KNKKNQFSGPTSSSKDTGGEAEGSSPPSAPAVWAGEEGTELEEEEVEEEEEEESGNLDEE 209

Query: 383 NIKKQSDSREKRRKNKKRHHSSSESEDSSSDSSDGEKRKRHKKSKKKKTSDTSEEDSYKK 442
            IKK              +   S   +    +         +K++    S  +E  +Y  
Sbjct: 210 EIKKMQSDEGTAGLEVTAYEEMSSLVNYIQPTKFVSFEFSAQKNRSYVISSFTELKAYDL 269

Query: 443 RKKHGKK 449
             K   +
Sbjct: 270 LSKASVQ 276


>d1nppa2 b.34.5.4 (A:191-248) N-utilization substance G protein
          NusG, C-terminal domain {Aquifex aeolicus [TaxId:
          63363]}
          Length = 58

 Score = 27.2 bits (61), Expect = 0.87
 Identities = 7/27 (25%), Positives = 14/27 (51%)

Query: 41 VKITGGMFKNNYGKLESFNEDSGRVVV 67
          V++  G F N  G +E  + +  ++ V
Sbjct: 11 VRVIEGPFMNFTGTVEEVHPEKRKLTV 37


>d2es4d1 a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB)
           {Burkholderia glumae [TaxId: 337]}
          Length = 280

 Score = 29.2 bits (65), Expect = 1.2
 Identities = 12/117 (10%), Positives = 33/117 (28%)

Query: 104 EEYKEKDAKQSNIEKVKDKSENNHRGEQHEKQYSKYRNSSDSEYEEKKMKPYKTNELLSR 163
            E K       + +   D+          +   +K  +   +     +M+      L   
Sbjct: 153 PEQKAARLAALDAQLTPDERAQQAALHAQQDAVTKIADLQKAGATPDQMRAQIAQTLGPE 212

Query: 164 VILRNSDSEYEEKKMKQYKTNEPRSQNKHEQYSKQESSRSRRDYQERKRKDSDSEER 220
              R +  + +++  +         +++          R  R  Q R++  +   E 
Sbjct: 213 AAARAAQMQQDDEAWQTRYQAYAAERDRIAAQGLAPQDRDARIAQLRQQTFTAPGEA 269


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.299    0.115    0.300 

Gapped
Lambda     K      H
   0.267   0.0531    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,877,782
Number of extensions: 80417
Number of successful extensions: 219
Number of sequences better than 10.0: 1
Number of HSP's gapped: 217
Number of HSP's successfully gapped: 50
Length of query: 624
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 533
Effective length of database: 1,158,166
Effective search space: 617302478
Effective search space used: 617302478
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.7 bits)
S2: 56 (25.8 bits)