BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4065
(348 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 81/170 (47%), Gaps = 32/170 (18%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 64
+P++C C + F K+ L RH +R H + KP+ C CGK+F++R +LR HQ+
Sbjct: 48 KPYKCPECGKSFSDKKDLTRH-QRTHTGE-------KPYKCPECGKSFSQRANLRAHQRT 99
Query: 65 HARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVCNQGF 124
H TG P + + A QR + +P++C C + F
Sbjct: 100 H--------------TGEKPYACPECGKSFSQLAHLRAHQRTHTGE--KPYKCPECGKSF 143
Query: 125 VRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHA 174
R+++L H +R H + KP+ C CGK+F+RR+ L HQ+ H
Sbjct: 144 SREDNLHTH-QRTHTGE-------KPYKCPECGKSFSRRDALNVHQRTHT 185
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 75/172 (43%), Gaps = 32/172 (18%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 64
+P+ C C + F R +HL H +R H + KP+ C CGK+F+ ++ L RHQ+
Sbjct: 20 KPYACPECGKSFSRSDHLAEH-QRTHTGE-------KPYKCPECGKSFSDKKDLTRHQRT 71
Query: 65 HARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVCNQGF 124
H E + + F L + R +P+ C C + F
Sbjct: 72 HTGEKPYKCPECG-------KSFSQRANLRAHQRTHTG---------EKPYACPECGKSF 115
Query: 125 VRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARE 176
+ HL H +R H + KP+ C CGK+F+R ++L HQ+ H E
Sbjct: 116 SQLAHLRAH-QRTHTGE-------KPYKCPECGKSFSREDNLHTHQRTHTGE 159
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 69/145 (47%), Gaps = 28/145 (19%)
Query: 32 LDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAEEVFPTPL 91
L+P E KP++C CGK+F+R +HL HQ+ H TG P
Sbjct: 15 LEPGE----KPYACPECGKSFSRSDHLAEHQRTH--------------TGEKPYKCPECG 56
Query: 92 RLDENVRRWVACQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPF 151
+ + + QR + +P++C C + F ++ +L H +R H + KP+
Sbjct: 57 KSFSDKKDLTRHQRTHTGE--KPYKCPECGKSFSQRANLRAH-QRTHTGE-------KPY 106
Query: 152 SCSVCGKTFTRREHLRRHQQIHARE 176
+C CGK+F++ HLR HQ+ H E
Sbjct: 107 ACPECGKSFSQLAHLRAHQRTHTGE 131
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 55/133 (41%), Gaps = 52/133 (39%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRW 100
KP+ C CGK+F++ +L++HQ+ H E
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGE-------------------------------- 30
Query: 101 VACQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTF 160
+P++C C + F + L +H+ R H + KP+ C CGK+F
Sbjct: 31 ------------KPYKCPECGKSFSQSSDLQKHQ-RTHTGE-------KPYKCPECGKSF 70
Query: 161 TRREHLRRHQQIH 173
+R +HL RHQ+ H
Sbjct: 71 SRSDHLSRHQRTH 83
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 8/61 (13%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 64
+P++C C + F + L +H+ R H + KP+ C CGK+F+R +HL RHQ+
Sbjct: 31 KPYKCPECGKSFSQSSDLQKHQ-RTHTGE-------KPYKCPECGKSFSRSDHLSRHQRT 82
Query: 65 H 65
H
Sbjct: 83 H 83
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 53/133 (39%), Gaps = 52/133 (39%)
Query: 3 VVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQ 62
+ +P++C C + F + +L +H+ R H + KP+ C CGK+F++ L++HQ
Sbjct: 1 MEKPYKCPECGKSFSQSSNLQKHQ-RTHTGE-------KPYKCPECGKSFSQSSDLQKHQ 52
Query: 63 QIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVCNQ 122
+ H E +P++C C +
Sbjct: 53 RTHTGE--------------------------------------------KPYKCPECGK 68
Query: 123 GFVRKEHLVRHRK 135
F R +HL RH++
Sbjct: 69 SFSRSDHLSRHQR 81
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 8/66 (12%)
Query: 111 VVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQ 170
+ +P++C C + F + +L +H+ R H + KP+ C CGK+F++ L++HQ
Sbjct: 1 MEKPYKCPECGKSFSQSSNLQKHQ-RTHTGE-------KPYKCPECGKSFSQSSDLQKHQ 52
Query: 171 QIHARE 176
+ H E
Sbjct: 53 RTHTGE 58
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc
Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt
Site)
Length = 90
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 8/64 (12%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 64
+PFQC +C + F R +HL H R H KPF+C +CG+ F R + +RH +I
Sbjct: 33 KPFQCRICMRNFSRSDHLTTH-IRTH-------TGEKPFACDICGRKFARSDERKRHTKI 84
Query: 65 HARE 68
H R+
Sbjct: 85 HLRQ 88
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 8/64 (12%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 172
+PFQC +C + F R +HL H R H KPF+C +CG+ F R + +RH +I
Sbjct: 33 KPFQCRICMRNFSRSDHLTTH-IRTH-------TGEKPFACDICGRKFARSDERKRHTKI 84
Query: 173 HARE 176
H R+
Sbjct: 85 HLRQ 88
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac
Site)
Length = 90
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 8/64 (12%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 64
+PFQC +C + F R +HL H R H + KPF+C +CG+ F R + +RH +I
Sbjct: 33 KPFQCRICMRNFSRSDHLTTH-IRTHTGE-------KPFACDICGRKFARSDERKRHTKI 84
Query: 65 HARE 68
H R+
Sbjct: 85 HLRQ 88
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 8/64 (12%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 172
+PFQC +C + F R +HL H R H + KPF+C +CG+ F R + +RH +I
Sbjct: 33 KPFQCRICMRNFSRSDHLTTH-IRTHTGE-------KPFACDICGRKFARSDERKRHTKI 84
Query: 173 HARE 176
H R+
Sbjct: 85 HLRQ 88
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 8/64 (12%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 64
+PFQC +C + F R +HL H R H + KPF+C +CG+ F R + +RH +I
Sbjct: 33 KPFQCRICMRNFSRSDHLTTH-IRTHTGE-------KPFACDICGRKFARSDERKRHTKI 84
Query: 65 HARE 68
H R+
Sbjct: 85 HLRQ 88
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 8/64 (12%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 172
+PFQC +C + F R +HL H R H + KPF+C +CG+ F R + +RH +I
Sbjct: 33 KPFQCRICMRNFSRSDHLTTH-IRTHTGE-------KPFACDICGRKFARSDERKRHTKI 84
Query: 173 HARE 176
H R+
Sbjct: 85 HLRQ 88
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac
Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt
Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc
Site)
Length = 90
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 8/64 (12%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 64
+PFQC +C + F R +HL H R H KPF+C +CG+ F R + +RH +I
Sbjct: 33 KPFQCRICMRNFSRSDHLTTH-IRTH-------TGEKPFACDICGRKFARSDERKRHTKI 84
Query: 65 HARE 68
H R+
Sbjct: 85 HLRQ 88
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 8/64 (12%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 172
+PFQC +C + F R +HL H R H KPF+C +CG+ F R + +RH +I
Sbjct: 33 KPFQCRICMRNFSRSDHLTTH-IRTH-------TGEKPFACDICGRKFARSDERKRHTKI 84
Query: 173 HARE 176
H R+
Sbjct: 85 HLRQ 88
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 8/64 (12%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 64
+PFQC +C + F R +HL H R H KPF+C +CG+ F R + +RH +I
Sbjct: 33 KPFQCRICMRNFSRSDHLTTH-IRTH-------TGEKPFACDICGRKFARSDERKRHTKI 84
Query: 65 HARE 68
H R+
Sbjct: 85 HLRQ 88
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 8/64 (12%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 172
+PFQC +C + F R +HL H R H KPF+C +CG+ F R + +RH +I
Sbjct: 33 KPFQCRICMRNFSRSDHLTTH-IRTH-------TGEKPFACDICGRKFARSDERKRHTKI 84
Query: 173 HARE 176
H R+
Sbjct: 85 HLRQ 88
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed
To Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed
To Dna
Length = 87
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 8/64 (12%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 64
+PFQC +C + F R +HL H R H KPF+C +CG+ F R + +RH +I
Sbjct: 32 KPFQCRICMRNFSRSDHLTTH-IRTH-------TGEKPFACDICGRKFARSDERKRHTKI 83
Query: 65 HARE 68
H R+
Sbjct: 84 HLRQ 87
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 8/64 (12%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 172
+PFQC +C + F R +HL H R H KPF+C +CG+ F R + +RH +I
Sbjct: 32 KPFQCRICMRNFSRSDHLTTH-IRTH-------TGEKPFACDICGRKFARSDERKRHTKI 83
Query: 173 HARE 176
H R+
Sbjct: 84 HLRQ 87
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 8/63 (12%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 64
+PFQC +C + F R +HL H R H + KPF+C +CG+ F R + +RH +I
Sbjct: 33 KPFQCRICMRNFSRSDHLTTH-IRTHTGE-------KPFACDICGRKFARSDERKRHTKI 84
Query: 65 HAR 67
H R
Sbjct: 85 HLR 87
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 8/63 (12%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 172
+PFQC +C + F R +HL H R H + KPF+C +CG+ F R + +RH +I
Sbjct: 33 KPFQCRICMRNFSRSDHLTTH-IRTHTGE-------KPFACDICGRKFARSDERKRHTKI 84
Query: 173 HAR 175
H R
Sbjct: 85 HLR 87
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 47/133 (35%), Gaps = 54/133 (40%)
Query: 5 RPFQCDV--CNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQ 62
RP+ C V C++ F R + L RH R H KPF C +C + F+R +HL H
Sbjct: 3 RPYACPVESCDRRFSRSDELTRH-IRIH-------TGQKPFQCRICMRNFSRSDHLTTHI 54
Query: 63 QIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVCNQ 122
+ H E +PF CD+C +
Sbjct: 55 RTHTGE--------------------------------------------KPFACDICGR 70
Query: 123 GFVRKEHLVRHRK 135
F R + RH K
Sbjct: 71 KFARSDERKRHTK 83
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 10/66 (15%)
Query: 113 RPFQCDV--CNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQ 170
RP+ C V C++ F R + L RH R H KPF C +C + F+R +HL H
Sbjct: 3 RPYACPVESCDRRFSRSDELTRH-IRIH-------TGQKPFQCRICMRNFSRSDHLTTHI 54
Query: 171 QIHARE 176
+ H E
Sbjct: 55 RTHTGE 60
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 38/64 (59%), Gaps = 9/64 (14%)
Query: 7 FQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRH-QQIH 65
F C+VC + F R+EHL RH R+H KP+ C +C + FTRR+ L RH Q+IH
Sbjct: 3 FVCEVCTRAFARQEHLKRH-YRSH-------TNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Query: 66 AREL 69
+ L
Sbjct: 55 SGNL 58
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 38/64 (59%), Gaps = 9/64 (14%)
Query: 115 FQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRH-QQIH 173
F C+VC + F R+EHL RH R+H KP+ C +C + FTRR+ L RH Q+IH
Sbjct: 3 FVCEVCTRAFARQEHLKRH-YRSH-------TNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Query: 174 AREL 177
+ L
Sbjct: 55 SGNL 58
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 38/102 (37%), Gaps = 44/102 (43%)
Query: 43 FSCSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVA 102
F C VC + F R+EHL+RH + H E
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNE---------------------------------- 28
Query: 103 CQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPE 144
+P+ C +CN+ F R++ L+RH ++ H + E
Sbjct: 29 ----------KPYPCGLCNRAFTRRDLLIRHAQKIHSGNLGE 60
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPE 36
+P+ C +CN+ F R++ L+RH ++ H + E
Sbjct: 29 KPYPCGLCNRAFTRRDLLIRHAQKIHSGNLGE 60
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 8/61 (13%)
Query: 4 VRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQ 63
++PFQC +C + F R +HL H R H KPF+C +CG+ F R + +RH+
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTH-IRTH-------TGEKPFACDICGRKFARSDERKRHRD 52
Query: 64 I 64
I
Sbjct: 53 I 53
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 8/61 (13%)
Query: 112 VRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQ 171
++PFQC +C + F R +HL H R H KPF+C +CG+ F R + +RH+
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTH-IRTH-------TGEKPFACDICGRKFARSDERKRHRD 52
Query: 172 I 172
I
Sbjct: 53 I 53
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 54/138 (39%), Gaps = 51/138 (36%)
Query: 38 AEAKPFSCSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENV 97
+ + +C +CGK F HL RH+ H+ E
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGE----------------------------- 33
Query: 98 RRWVACQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCG 157
+P+ C VC F RK+ + H R+HD G+ KP+ C CG
Sbjct: 34 ---------------KPYSCPVCGLRFKRKDRMSYH-VRSHD-----GSVGKPYICQSCG 72
Query: 158 KTFTRREHLRRH-QQIHA 174
K F+R +HL H +Q+H+
Sbjct: 73 KGFSRPDHLNGHIKQVHS 90
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 7/63 (11%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRH-QQ 63
+P+ C VC F RK+ + H R+HD G+ KP+ C CGK F+R +HL H +Q
Sbjct: 34 KPYSCPVCGLRFKRKDRMSYH-VRSHD-----GSVGKPYICQSCGKGFSRPDHLNGHIKQ 87
Query: 64 IHA 66
+H+
Sbjct: 88 VHS 90
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 2 DVVRPFQCDVCNQGFVRKEHLVRHRKRAHD 31
V +P+ C C +GF R +HL H K+ H
Sbjct: 61 SVGKPYICQSCGKGFSRPDHLNGHIKQVHS 90
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 57/141 (40%), Gaps = 26/141 (18%)
Query: 37 GAEAKPFSCSV--CGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAEEVFPTPLRLD 94
+E +PF C+ C K + + HL+ H + H E E F +L
Sbjct: 1 ASEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGE-----KPYQCDFKDCERRFSRSDQLK 55
Query: 95 ENVRRWVACQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 154
+ RR V+PFQC C + F R +HL H R H + KPFSC
Sbjct: 56 RHQRRHTG---------VKPFQCKTCQRKFSRSDHLKTH-TRTHTGE-------KPFSCR 98
Query: 155 V--CGKTFTRREHLRRHQQIH 173
C K F R + L RH +H
Sbjct: 99 WPSCQKKFARSDELVRHHNMH 119
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 10/66 (15%)
Query: 5 RPFQCDV--CNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQ 62
+P+QCD C + F R + L RH++R KPF C C + F+R +HL+ H
Sbjct: 35 KPYQCDFKDCERRFSRSDQLKRHQRRH--------TGVKPFQCKTCQRKFSRSDHLKTHT 86
Query: 63 QIHARE 68
+ H E
Sbjct: 87 RTHTGE 92
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 10/66 (15%)
Query: 113 RPFQCDV--CNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQ 170
+P+QCD C + F R + L RH++R KPF C C + F+R +HL+ H
Sbjct: 35 KPYQCDFKDCERRFSRSDQLKRHQRRH--------TGVKPFQCKTCQRKFSRSDHLKTHT 86
Query: 171 QIHARE 176
+ H E
Sbjct: 87 RTHTGE 92
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 32/64 (50%), Gaps = 10/64 (15%)
Query: 4 VRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV--CGKTFTRREHLRRH 61
V+PFQC C + F R +HL H R H + KPFSC C K F R + L RH
Sbjct: 64 VKPFQCKTCQRKFSRSDHLKTH-TRTHTGE-------KPFSCRWPSCQKKFARSDELVRH 115
Query: 62 QQIH 65
+H
Sbjct: 116 HNMH 119
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain
Of Human Transcriptional Repressor Ctcf
Length = 86
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRH 61
+P+ C C++ F +K+ L H KR HD + A F CS CGKTFTRR + RH
Sbjct: 14 KPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAA----FVCSKCGKTFTRRNTMARH 66
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRH 169
+P+ C C++ F +K+ L H KR HD + A F CS CGKTFTRR + RH
Sbjct: 14 KPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAA----FVCSKCGKTFTRRNTMARH 66
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 5/65 (7%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 64
+PF+C C + + RKE+L+ H R + ++ E + F+CSVC +TF RR LR H
Sbjct: 34 KPFECPKCGKCYFRKENLLEHEAR-NCMNRSE----QVFTCSVCQETFRRRMELRLHMVS 88
Query: 65 HAREL 69
H E+
Sbjct: 89 HTGEM 93
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 5/65 (7%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 172
+PF+C C + + RKE+L+ H R + ++ E + F+CSVC +TF RR LR H
Sbjct: 34 KPFECPKCGKCYFRKENLLEHEAR-NCMNRSE----QVFTCSVCQETFRRRMELRLHMVS 88
Query: 173 HAREL 177
H E+
Sbjct: 89 HTGEM 93
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 63/140 (45%), Gaps = 26/140 (18%)
Query: 8 QCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHAR 67
+C C++ F+ K +L H R H + KPF C CGK + R+E+L H+ AR
Sbjct: 9 ECPTCHKKFLSKYYLKVH-NRKHTGE-------KPFECPKCGKCYFRKENLLEHE---AR 57
Query: 68 ELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVV--RPFQCDVCNQGFV 125
+ S E+VF + E RR + R+ + P++C C+Q F+
Sbjct: 58 NCMNRS----------EQVFTCSV-CQETFRRRME-LRLHMVSHTGEMPYKCSSCSQQFM 105
Query: 126 RKEHLVRHRKRAHDLDPPEG 145
+K+ L H + H P G
Sbjct: 106 QKKDLQSHMIKLHS-GPSSG 124
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 12/74 (16%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 64
RP+ CD+C++ F R++HL HR ++ KPF C CGK F + L H+ +
Sbjct: 44 RPYTCDICHKAFRRQDHLRDHRY--------IHSKEKPFKCQECGKGFCQSRTLAVHKTL 95
Query: 65 HARELLQSSMDMSA 78
H +Q+S +A
Sbjct: 96 H----MQTSSPTAA 105
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 12/74 (16%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 172
RP+ CD+C++ F R++HL HR ++ KPF C CGK F + L H+ +
Sbjct: 44 RPYTCDICHKAFRRQDHLRDHRY--------IHSKEKPFKCQECGKGFCQSRTLAVHKTL 95
Query: 173 HARELLQSSMDMSA 186
H +Q+S +A
Sbjct: 96 H----MQTSSPTAA 105
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 8/64 (12%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 64
+ F C C + F + +L+ H +R H + +P++C +C K F R++HLR H+ I
Sbjct: 16 KEFICKFCGRHFTKSYNLLIH-ERTH-------TDERPYTCDICHKAFRRQDHLRDHRYI 67
Query: 65 HARE 68
H++E
Sbjct: 68 HSKE 71
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 8/64 (12%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 172
+ F C C + F + +L+ H +R H + +P++C +C K F R++HLR H+ I
Sbjct: 16 KEFICKFCGRHFTKSYNLLIH-ERTH-------TDERPYTCDICHKAFRRQDHLRDHRYI 67
Query: 173 HARE 176
H++E
Sbjct: 68 HSKE 71
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 43.1 bits (100), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 8/64 (12%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 64
+P++CD C F K +L H K H KP+ C++CG F R +L+ H +I
Sbjct: 16 KPYKCDRCQASFRYKGNLASH-KTVH-------TGEKPYRCNICGAQFNRPANLKTHTRI 67
Query: 65 HARE 68
H+ E
Sbjct: 68 HSGE 71
Score = 43.1 bits (100), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 8/64 (12%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 172
+P++CD C F K +L H K H KP+ C++CG F R +L+ H +I
Sbjct: 16 KPYKCDRCQASFRYKGNLASH-KTVH-------TGEKPYRCNICGAQFNRPANLKTHTRI 67
Query: 173 HARE 176
H+ E
Sbjct: 68 HSGE 71
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2
Domains Of Human Zinc Finger Protein 297b
Length = 110
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Query: 4 VRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRH 61
+RP+ C VC + F K HLV H K + KP+ C++C K F R+ RH
Sbjct: 35 LRPYGCGVCGKKFKMKHHLVGHMKIHTGI--------KPYECNICAKRFMWRDSFHRH 84
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Query: 112 VRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRH 169
+RP+ C VC + F K HLV H K + KP+ C++C K F R+ RH
Sbjct: 35 LRPYGCGVCGKKFKMKHHLVGHMKIHTGI--------KPYECNICAKRFMWRDSFHRH 84
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 11/65 (16%)
Query: 2 DVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRH 61
D + P QC + F K RH L +P+ C VCGK F + HL H
Sbjct: 8 DKLYPCQC---GKSFTHKSQRDRHMSMHLGL--------RPYGCGVCGKKFKMKHHLVGH 56
Query: 62 QQIHA 66
+IH
Sbjct: 57 MKIHT 61
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 11/65 (16%)
Query: 110 DVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRH 169
D + P QC + F K RH L +P+ C VCGK F + HL H
Sbjct: 8 DKLYPCQC---GKSFTHKSQRDRHMSMHLGL--------RPYGCGVCGKKFKMKHHLVGH 56
Query: 170 QQIHA 174
+IH
Sbjct: 57 MKIHT 61
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2
Domain Of Zinc Finger Protein 435
Length = 77
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 64
R ++CD C + F L +HR R H + KP+ C CGK F +R HL H ++
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHR-RTHTGE-------KPYKCDECGKAFIQRSHLIGHHRV 68
Query: 65 HA 66
H
Sbjct: 69 HT 70
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 172
R ++CD C + F L +HR R H + KP+ C CGK F +R HL H ++
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHR-RTHTGE-------KPYKCDECGKAFIQRSHLIGHHRV 68
Query: 173 HA 174
H
Sbjct: 69 HT 70
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/107 (18%), Positives = 36/107 (33%), Gaps = 44/107 (41%)
Query: 39 EAKPFSCSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVR 98
E + + C CGK+F+ L +H++ H E
Sbjct: 15 ERRRYKCDECGKSFSHSSDLSKHRRTHTGE------------------------------ 44
Query: 99 RWVACQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEG 145
+P++CD C + F+++ HL+ H + P G
Sbjct: 45 --------------KPYKCDECGKAFIQRSHLIGHHRVHTGSGPSSG 77
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEG 37
+P++CD C + F+++ HL+ H + P G
Sbjct: 45 KPYKCDECGKAFIQRSHLIGHHRVHTGSGPSSG 77
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 10/63 (15%)
Query: 5 RPFQC--DVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQ 62
+P++C + C+ F R + L RH ++ AKPF C VC ++F+R +HL H
Sbjct: 44 KPYKCTWEGCDWRFARSDELTRHYRKH--------TGAKPFQCGVCNRSFSRSDHLALHM 95
Query: 63 QIH 65
+ H
Sbjct: 96 KRH 98
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 10/63 (15%)
Query: 113 RPFQC--DVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQ 170
+P++C + C+ F R + L RH ++ AKPF C VC ++F+R +HL H
Sbjct: 44 KPYKCTWEGCDWRFARSDELTRHYRKH--------TGAKPFQCGVCNRSFSRSDHLALHM 95
Query: 171 QIH 173
+ H
Sbjct: 96 KRH 98
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
641- 673) Of Human Zinc Finger Protein 473
Length = 46
Score = 42.0 bits (97), Expect = 5e-04, Method: Composition-based stats.
Identities = 17/32 (53%), Positives = 21/32 (65%)
Query: 37 GAEAKPFSCSVCGKTFTRREHLRRHQQIHARE 68
G + PF C+ CGKTF+ HL +HQ IHA E
Sbjct: 7 GTKEHPFKCNECGKTFSHSAHLSKHQLIHAGE 38
Score = 42.0 bits (97), Expect = 5e-04, Method: Composition-based stats.
Identities = 17/32 (53%), Positives = 21/32 (65%)
Query: 145 GAEAKPFSCSVCGKTFTRREHLRRHQQIHARE 176
G + PF C+ CGKTF+ HL +HQ IHA E
Sbjct: 7 GTKEHPFKCNECGKTFSHSAHLSKHQLIHAGE 38
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain
Of Human Zinc Finger Protein 24
Length = 72
Score = 41.6 bits (96), Expect = 7e-04, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 8/61 (13%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 64
+P+ C C + F R LV+H +R H KP+ C CGK F++ L HQ+I
Sbjct: 13 KPYGCVECGKAFSRSSILVQH-QRVH-------TGEKPYKCLECGKAFSQNSGLINHQRI 64
Query: 65 H 65
H
Sbjct: 65 H 65
Score = 41.6 bits (96), Expect = 7e-04, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 8/61 (13%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 172
+P+ C C + F R LV+H +R H KP+ C CGK F++ L HQ+I
Sbjct: 13 KPYGCVECGKAFSRSSILVQH-QRVH-------TGEKPYKCLECGKAFSQNSGLINHQRI 64
Query: 173 H 173
H
Sbjct: 65 H 65
Score = 33.9 bits (76), Expect = 0.15, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
KP+ C CGK F+R L +HQ++H E
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGE 40
Score = 33.9 bits (76), Expect = 0.15, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
KP+ C CGK F+R L +HQ++H E
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGE 40
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 41.2 bits (95), Expect = 8e-04, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 21/28 (75%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
KP+ CS+CGK+FT++ L HQQIH E
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGE 38
Score = 41.2 bits (95), Expect = 8e-04, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 21/28 (75%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
KP+ CS+CGK+FT++ L HQQIH E
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGE 38
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 40.4 bits (93), Expect = 0.001, Method: Composition-based stats.
Identities = 29/128 (22%), Positives = 43/128 (33%), Gaps = 54/128 (42%)
Query: 48 CGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIE 107
CGKT+T+ HL+ H + H E
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGE--------------------------------------- 34
Query: 108 GIDVVRPFQCDV--CNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREH 165
+P+ CD C F R + L RH ++ +PF C C + F+R +H
Sbjct: 35 -----KPYHCDWDGCGWKFARSDELTRHYRKH--------TGHRPFQCQKCDRAFSRSDH 81
Query: 166 LRRHQQIH 173
L H + H
Sbjct: 82 LALHMKRH 89
Score = 38.9 bits (89), Expect = 0.005, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 10/63 (15%)
Query: 5 RPFQCDV--CNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQ 62
+P+ CD C F R + L RH ++ +PF C C + F+R +HL H
Sbjct: 35 KPYHCDWDGCGWKFARSDELTRHYRKH--------TGHRPFQCQKCDRAFSRSDHLALHM 86
Query: 63 QIH 65
+ H
Sbjct: 87 KRH 89
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 40.0 bits (92), Expect = 0.002, Method: Composition-based stats.
Identities = 29/128 (22%), Positives = 43/128 (33%), Gaps = 54/128 (42%)
Query: 48 CGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIE 107
CGKT+T+ HL+ H + H E
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGE--------------------------------------- 33
Query: 108 GIDVVRPFQCDV--CNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREH 165
+P+ CD C F R + L RH ++ +PF C C + F+R +H
Sbjct: 34 -----KPYHCDWDGCGWKFARSDELTRHYRKH--------TGHRPFQCQKCDRAFSRSDH 80
Query: 166 LRRHQQIH 173
L H + H
Sbjct: 81 LALHMKRH 88
Score = 38.5 bits (88), Expect = 0.006, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 10/63 (15%)
Query: 5 RPFQCDV--CNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQ 62
+P+ CD C F R + L RH ++ +PF C C + F+R +HL H
Sbjct: 34 KPYHCDWDGCGWKFARSDELTRHYRKH--------TGHRPFQCQKCDRAFSRSDHLALHM 85
Query: 63 QIH 65
+ H
Sbjct: 86 KRH 88
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 39.7 bits (91), Expect = 0.002, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARELL 70
KP+SC+VCGK F HL +H ++H +E L
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLRVHTQETL 40
Score = 39.7 bits (91), Expect = 0.002, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARELL 178
KP+SC+VCGK F HL +H ++H +E L
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLRVHTQETL 40
Score = 27.7 bits (60), Expect = 8.6, Method: Composition-based stats.
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 5 RPFQCDVCNQGFVRKEHLVRH 25
+P+ C+VC + FV HL +H
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQH 31
Score = 27.7 bits (60), Expect = 8.6, Method: Composition-based stats.
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 113 RPFQCDVCNQGFVRKEHLVRH 133
+P+ C+VC + FV HL +H
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQH 31
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
Length = 73
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 10/65 (15%)
Query: 4 VRPFQCDV--CNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRH 61
+RP+ C V C++ F R + L RH R H KPF C +C + F+R +HL H
Sbjct: 17 MRPYACPVESCDRRFSRSDELTRH-IRIH-------TGQKPFQCRICMRNFSRSDHLTTH 68
Query: 62 QQIHA 66
+ H
Sbjct: 69 IRTHT 73
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 10/65 (15%)
Query: 112 VRPFQCDV--CNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRH 169
+RP+ C V C++ F R + L RH R H KPF C +C + F+R +HL H
Sbjct: 17 MRPYACPVESCDRRFSRSDELTRH-IRIH-------TGQKPFQCRICMRNFSRSDHLTTH 68
Query: 170 QQIHA 174
+ H
Sbjct: 69 IRTHT 73
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 8/64 (12%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 64
+PFQC +C + F ++ L H R H + KPF+C +CG+ F RH +I
Sbjct: 33 KPFQCRICMRNFSQQASLNAH-IRTHTGE-------KPFACDICGRKFATLHTRTRHTKI 84
Query: 65 HARE 68
H R+
Sbjct: 85 HLRQ 88
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 8/64 (12%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 172
+PFQC +C + F ++ L H R H + KPF+C +CG+ F RH +I
Sbjct: 33 KPFQCRICMRNFSQQASLNAH-IRTHTGE-------KPFACDICGRKFATLHTRTRHTKI 84
Query: 173 HARE 176
H R+
Sbjct: 85 HLRQ 88
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(CLONE #2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(CLONE #2)
Length = 90
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 8/64 (12%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 64
+PFQC +C + F + L +H R H KPF+C +CG+ F RH +I
Sbjct: 33 KPFQCRICMRNFSQHTGLNQH-IRTH-------TGEKPFACDICGRKFATLHTRDRHTKI 84
Query: 65 HARE 68
H R+
Sbjct: 85 HLRQ 88
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 8/64 (12%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 172
+PFQC +C + F + L +H R H KPF+C +CG+ F RH +I
Sbjct: 33 KPFQCRICMRNFSQHTGLNQH-IRTH-------TGEKPFACDICGRKFATLHTRDRHTKI 84
Query: 173 HARE 176
H R+
Sbjct: 85 HLRQ 88
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 20/26 (76%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHA 66
KP+ CSVCGK F+ R+ L HQ+IH+
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHS 36
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 20/26 (76%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHA 174
KP+ CSVCGK F+ R+ L HQ+IH+
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHS 36
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 38.5 bits (88), Expect = 0.005, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 21/28 (75%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
+P+ C+VCGK FT R +L +HQ+IH E
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGE 38
Score = 38.5 bits (88), Expect = 0.005, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 21/28 (75%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
+P+ C+VCGK FT R +L +HQ+IH E
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGE 38
Score = 29.6 bits (65), Expect = 2.5, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEA 40
RP+ C VC + F + +L++H+K H + P G +
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQK-IHTGEKPSGPSS 45
Score = 29.6 bits (65), Expect = 2.5, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEA 148
RP+ C VC + F + +L++H+K H + P G +
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQK-IHTGEKPSGPSS 45
>pdb|2EOX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
315- 345) Of Human Zinc Finger Protein 473
Length = 44
Score = 38.5 bits (88), Expect = 0.005, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 43 FSCSVCGKTFTRREHLRRHQQIHARELLQSS 73
++C+ CGK FTR HL RHQ+IH R+ SS
Sbjct: 13 YNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 38.5 bits (88), Expect = 0.005, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 151 FSCSVCGKTFTRREHLRRHQQIHARELLQSS 181
++C+ CGK FTR HL RHQ+IH R+ SS
Sbjct: 13 YNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
628- 660) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
+PF C+ CGK F RR HL H ++H+RE
Sbjct: 11 RPFKCNECGKGFGRRSHLAGHLRLHSRE 38
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
+PF C+ CGK F RR HL H ++H+RE
Sbjct: 11 RPFKCNECGKGFGRRSHLAGHLRLHSRE 38
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 5 RPFQCDVCNQGFVRKEHLVRH 25
RPF+C+ C +GF R+ HL H
Sbjct: 11 RPFKCNECGKGFGRRSHLAGH 31
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 113 RPFQCDVCNQGFVRKEHLVRH 133
RPF+C+ C +GF R+ HL H
Sbjct: 11 RPFKCNECGKGFGRRSHLAGH 31
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
KPF C CGK++ +R HL +HQ++H E
Sbjct: 11 KPFKCGECGKSYNQRVHLTQHQRVHTGE 38
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
KPF C CGK++ +R HL +HQ++H E
Sbjct: 11 KPFKCGECGKSYNQRVHLTQHQRVHTGE 38
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEG 37
+PF+C C + + ++ HL +H+ R H + P G
Sbjct: 11 KPFKCGECGKSYNQRVHLTQHQ-RVHTGEKPSG 42
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEG 145
+PF+C C + + ++ HL +H+ R H + P G
Sbjct: 11 KPFKCGECGKSYNQRVHLTQHQ-RVHTGEKPSG 42
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.7 bits (86), Expect = 0.010, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
KP+ C+ CGK FT+ HL RH+ IH E
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGE 38
Score = 37.7 bits (86), Expect = 0.010, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
KP+ C+ CGK FT+ HL RH+ IH E
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGE 38
Score = 29.3 bits (64), Expect = 3.7, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEA 40
+P++C+ C + F + HL RHR H + P G +
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRG-IHTGEKPSGPSS 45
Score = 29.3 bits (64), Expect = 3.7, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEA 148
+P++C+ C + F + HL RHR H + P G +
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRG-IHTGEKPSGPSS 45
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.7 bits (86), Expect = 0.010, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
KP+ C+ CGK FT+ HL RH+ IH E
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGE 38
Score = 37.7 bits (86), Expect = 0.010, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
KP+ C+ CGK FT+ HL RH+ IH E
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGE 38
Score = 29.3 bits (64), Expect = 3.8, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEA 40
+P++C+ C + F + HL RHR H + P G +
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRG-IHTGEKPSGPSS 45
Score = 29.3 bits (64), Expect = 3.8, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEA 148
+P++C+ C + F + HL RHR H + P G +
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRG-IHTGEKPSGPSS 45
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.7 bits (86), Expect = 0.011, Method: Composition-based stats.
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
KP+ C+ CGK FT+ HL HQ+IH
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRIH 35
Score = 37.7 bits (86), Expect = 0.011, Method: Composition-based stats.
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
KP+ C+ CGK FT+ HL HQ+IH
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRIH 35
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
KPF C CGK FT+ HL HQ++H E
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVHTGE 38
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
KPF C CGK FT+ HL HQ++H E
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVHTGE 38
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEG 37
+PFQC+ C + F + HL H +R H + P G
Sbjct: 11 KPFQCEECGKRFTQNSHLHSH-QRVHTGEKPSG 42
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEG 145
+PFQC+ C + F + HL H +R H + P G
Sbjct: 11 KPFQCEECGKRFTQNSHLHSH-QRVHTGEKPSG 42
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 17/28 (60%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
KP+ C CGK F R HL RHQ IH E
Sbjct: 11 KPYKCHECGKVFRRNSHLARHQLIHTGE 38
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 17/28 (60%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
KP+ C CGK F R HL RHQ IH E
Sbjct: 11 KPYKCHECGKVFRRNSHLARHQLIHTGE 38
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
KPF C +CGK+F R L RH +H E
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHSMVHTAE 38
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
KPF C +CGK+F R L RH +H E
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHSMVHTAE 38
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEA 40
+PF+CD+C + F + L RH H + P G +
Sbjct: 11 KPFKCDICGKSFCGRSRLNRH-SMVHTAEKPSGPSS 45
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEA 148
+PF+CD+C + F + L RH H + P G +
Sbjct: 11 KPFKCDICGKSFCGRSRLNRH-SMVHTAEKPSGPSS 45
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.4 bits (85), Expect = 0.014, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
KP+ C+ CGK FT+ HL RH+ IH E
Sbjct: 11 KPYKCNECGKVFTQNSHLVRHRGIHTGE 38
Score = 37.4 bits (85), Expect = 0.014, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
KP+ C+ CGK FT+ HL RH+ IH E
Sbjct: 11 KPYKCNECGKVFTQNSHLVRHRGIHTGE 38
Score = 30.8 bits (68), Expect = 1.3, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEA 40
+P++C+ C + F + HLVRHR H + P G +
Sbjct: 11 KPYKCNECGKVFTQNSHLVRHRG-IHTGEKPSGPSS 45
Score = 30.8 bits (68), Expect = 1.3, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEA 148
+P++C+ C + F + HLVRHR H + P G +
Sbjct: 11 KPYKCNECGKVFTQNSHLVRHRG-IHTGEKPSGPSS 45
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 37.0 bits (84), Expect = 0.014, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 21/28 (75%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
KP+ C+ CGK+F ++ HL RH++IH E
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIHTGE 38
Score = 37.0 bits (84), Expect = 0.014, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 21/28 (75%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
KP+ C+ CGK+F ++ HL RH++IH E
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIHTGE 38
Score = 32.3 bits (72), Expect = 0.35, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEA 40
+P+ C+ C + F++K HL RHR R H + P G +
Sbjct: 11 KPYICNECGKSFIQKSHLNRHR-RIHTGEKPSGPSS 45
Score = 32.3 bits (72), Expect = 0.35, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEA 148
+P+ C+ C + F++K HL RHR R H + P G +
Sbjct: 11 KPYICNECGKSFIQKSHLNRHR-RIHTGEKPSGPSS 45
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 18/28 (64%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
KP+ CS CGK FTR+ L HQQ H E
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQQSHTGE 38
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 18/28 (64%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
KP+ CS CGK FTR+ L HQQ H E
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQQSHTGE 38
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 484
Length = 42
Score = 37.0 bits (84), Expect = 0.017, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARELLQSS 73
KP+ C+ CGK F R+ H H++IH E SS
Sbjct: 9 KPYVCTECGKAFIRKSHFITHERIHTGESGPSS 41
Score = 37.0 bits (84), Expect = 0.017, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARELLQSS 181
KP+ C+ CGK F R+ H H++IH E SS
Sbjct: 9 KPYVCTECGKAFIRKSHFITHERIHTGESGPSS 41
Score = 29.6 bits (65), Expect = 2.9, Method: Composition-based stats.
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRK 27
+P+ C C + F+RK H + H +
Sbjct: 9 KPYVCTECGKAFIRKSHFITHER 31
Score = 29.6 bits (65), Expect = 2.9, Method: Composition-based stats.
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRK 135
+P+ C C + F+RK H + H +
Sbjct: 9 KPYVCTECGKAFIRKSHFITHER 31
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 37.0 bits (84), Expect = 0.017, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 42 PFSCSVCGKTFTRREHLRRHQQIHARELLQSS 73
P+ CS CGK F R++ L HQ+ HA E SS
Sbjct: 10 PYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 37.0 bits (84), Expect = 0.017, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 150 PFSCSVCGKTFTRREHLRRHQQIHARELLQSS 181
P+ CS CGK F R++ L HQ+ HA E SS
Sbjct: 10 PYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 28.5 bits (62), Expect = 6.3, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 6 PFQCDVCNQGFVRKEHLVRH-RKRAHDLDPPEG 37
P++C C + F RK+ L+ H R A + P G
Sbjct: 10 PYECSECGKAFNRKDQLISHQRTHAGESGPSSG 42
Score = 28.5 bits (62), Expect = 6.3, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 114 PFQCDVCNQGFVRKEHLVRH-RKRAHDLDPPEG 145
P++C C + F RK+ L+ H R A + P G
Sbjct: 10 PYECSECGKAFNRKDQLISHQRTHAGESGPSSG 42
>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
273- 303) Of Human Zinc Finger Protein 268
Length = 44
Score = 37.0 bits (84), Expect = 0.018, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
KPF CS C K F+ + +L HQQ HA E
Sbjct: 9 KPFGCSCCEKAFSSKSYLLVHQQTHAEE 36
Score = 37.0 bits (84), Expect = 0.018, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
KPF CS C K F+ + +L HQQ HA E
Sbjct: 9 KPFGCSCCEKAFSSKSYLLVHQQTHAEE 36
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHA 66
KP+ C+ CGK FT+ HL RH+++H
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRVHT 36
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHA 174
KP+ C+ CGK FT+ HL RH+++H
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRVHT 36
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEG 37
+P++C+ C + F + HL RHR R H P G
Sbjct: 11 KPYKCNECGKVFTQNSHLARHR-RVHTGGKPSG 42
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEG 145
+P++C+ C + F + HL RHR R H P G
Sbjct: 11 KPYKCNECGKVFTQNSHLARHR-RVHTGGKPSG 42
>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
771- 803) Of Human Zinc Finger Protein 484
Length = 46
Score = 36.6 bits (83), Expect = 0.019, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 21/28 (75%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
KP+ C+ CGK FT R +L +HQ+IH ++
Sbjct: 11 KPYICAECGKAFTIRSNLIKHQKIHTKQ 38
Score = 36.6 bits (83), Expect = 0.019, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 21/28 (75%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
KP+ C+ CGK FT R +L +HQ+IH ++
Sbjct: 11 KPYICAECGKAFTIRSNLIKHQKIHTKQ 38
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 36.6 bits (83), Expect = 0.019, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 8/62 (12%)
Query: 7 FQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHA 66
F C +C + F R L H D +P+ C CGK F ++ +++H IH
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSD--------TRPYPCQYCGKRFHQKSDMKKHTFIHT 53
Query: 67 RE 68
E
Sbjct: 54 GE 55
Score = 36.6 bits (83), Expect = 0.019, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 8/62 (12%)
Query: 115 FQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHA 174
F C +C + F R L H D +P+ C CGK F ++ +++H IH
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSD--------TRPYPCQYCGKRFHQKSDMKKHTFIHT 53
Query: 175 RE 176
E
Sbjct: 54 GE 55
Score = 36.2 bits (82), Expect = 0.028, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 42/131 (32%), Gaps = 52/131 (39%)
Query: 43 FSCSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVA 102
F C +CGK+F R L H IH+
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSD----------------------------------- 26
Query: 103 CQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTR 162
RP+ C C + F +K + +H H KP C VCGK F++
Sbjct: 27 ---------TRPYPCQYCGKRFHQKSDMKKH-TFIH-------TGEKPHKCQVCGKAFSQ 69
Query: 163 REHLRRHQQIH 173
+L H + H
Sbjct: 70 SSNLITHSRKH 80
Score = 33.9 bits (76), Expect = 0.13, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 8/61 (13%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 64
RP+ C C + F +K + +H H KP C VCGK F++ +L H +
Sbjct: 28 RPYPCQYCGKRFHQKSDMKKH-TFIH-------TGEKPHKCQVCGKAFSQSSNLITHSRK 79
Query: 65 H 65
H
Sbjct: 80 H 80
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 36.6 bits (83), Expect = 0.022, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 20/37 (54%)
Query: 37 GAEAKPFSCSVCGKTFTRREHLRRHQQIHARELLQSS 73
G KP+ CS CGK F R L HQ+ H+ E SS
Sbjct: 7 GTREKPYECSECGKAFIRNSQLIVHQRTHSGESGPSS 43
Score = 36.6 bits (83), Expect = 0.022, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 20/37 (54%)
Query: 145 GAEAKPFSCSVCGKTFTRREHLRRHQQIHARELLQSS 181
G KP+ CS CGK F R L HQ+ H+ E SS
Sbjct: 7 GTREKPYECSECGKAFIRNSQLIVHQRTHSGESGPSS 43
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 36.6 bits (83), Expect = 0.022, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
KP+ C+ CGK FT+ HL H +IH E
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIHTGE 38
Score = 36.6 bits (83), Expect = 0.022, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
KP+ C+ CGK FT+ HL H +IH E
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIHTGE 38
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 36.2 bits (82), Expect = 0.026, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
KP+ C VC K FT++ HL +HQ+ H E
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGE 38
Score = 36.2 bits (82), Expect = 0.026, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
KP+ C VC K FT++ HL +HQ+ H E
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGE 38
Score = 32.3 bits (72), Expect = 0.40, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEA 40
+P++C VC++ F +K HL +H+K H + P G +
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQK-THTGEKPSGPSS 45
Score = 32.3 bits (72), Expect = 0.40, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEA 148
+P++C VC++ F +K HL +H+K H + P G +
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQK-THTGEKPSGPSS 45
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 36.2 bits (82), Expect = 0.027, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 11/62 (17%)
Query: 9 CDV--CNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS--VCGKTFTRREHLRRHQQI 64
CD C + F +++L H+K H K FSC CGK+F ++HL+ H ++
Sbjct: 10 CDFPGCGRIFSNRQYLNHHKKYQH-------IHQKSFSCPEPACGKSFNFKKHLKEHMKL 62
Query: 65 HA 66
H+
Sbjct: 63 HS 64
Score = 36.2 bits (82), Expect = 0.027, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 11/62 (17%)
Query: 117 CDV--CNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS--VCGKTFTRREHLRRHQQI 172
CD C + F +++L H+K H K FSC CGK+F ++HL+ H ++
Sbjct: 10 CDFPGCGRIFSNRQYLNHHKKYQH-------IHQKSFSCPEPACGKSFNFKKHLKEHMKL 62
Query: 173 HA 174
H+
Sbjct: 63 HS 64
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 36.2 bits (82), Expect = 0.031, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARELL 70
KP+ C+ CGK F+ + +L HQ+IH E L
Sbjct: 9 KPYGCNECGKDFSSKSYLIVHQRIHTGEKL 38
Score = 36.2 bits (82), Expect = 0.031, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARELL 178
KP+ C+ CGK F+ + +L HQ+IH E L
Sbjct: 9 KPYGCNECGKDFSSKSYLIVHQRIHTGEKL 38
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 36.2 bits (82), Expect = 0.031, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
KP+ C+ CGK FT R +L HQ+IH E
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIHTGE 38
Score = 36.2 bits (82), Expect = 0.031, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
KP+ C+ CGK FT R +L HQ+IH E
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIHTGE 38
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
519- 551) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
KP+ CS CGK+FT + LR HQ+ H E
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIHQKCHTGE 38
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
KP+ CS CGK+FT + LR HQ+ H E
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIHQKCHTGE 38
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.8 bits (81), Expect = 0.033, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 37 GAEAKPFSCSVCGKTFTRREHLRRHQQIHARE 68
G + KP+ C CGK F R +L HQ IH E
Sbjct: 7 GTKEKPYKCYECGKAFRTRSNLTTHQVIHTGE 38
Score = 35.8 bits (81), Expect = 0.033, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 145 GAEAKPFSCSVCGKTFTRREHLRRHQQIHARE 176
G + KP+ C CGK F R +L HQ IH E
Sbjct: 7 GTKEKPYKCYECGKAFRTRSNLTTHQVIHTGE 38
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.8 bits (81), Expect = 0.039, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
KP+ CS CGK+F ++ L HQ+IH E
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRIHTGE 38
Score = 35.8 bits (81), Expect = 0.039, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
KP+ CS CGK+F ++ L HQ+IH E
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRIHTGE 38
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 64
RPF C+ C + + L RHR RAH +P SC CGK F + + RH ++
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHR-RAH-------LGYRPRSCPECGKCFRDQSEVNRHLKV 54
Query: 65 H 65
H
Sbjct: 55 H 55
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 172
RPF C+ C + + L RHR RAH +P SC CGK F + + RH ++
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHR-RAH-------LGYRPRSCPECGKCFRDQSEVNRHLKV 54
Query: 173 H 173
H
Sbjct: 55 H 55
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
K F C+ CGK FTR+ L HQ+IH E
Sbjct: 11 KHFECTECGKAFTRKSTLSMHQKIHTGE 38
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
K F C+ CGK FTR+ L HQ+IH E
Sbjct: 11 KHFECTECGKAFTRKSTLSMHQKIHTGE 38
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 35.4 bits (80), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
KP+ C+ CGK F++ L RHQ++H E
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGE 38
Score = 35.4 bits (80), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
KP+ C+ CGK F++ L RHQ++H E
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGE 38
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEG 37
+P+QC+ C + F + L RH+ R H + P G
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQ-RVHTGEKPSG 42
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEG 145
+P+QC+ C + F + L RH+ R H + P G
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQ-RVHTGEKPSG 42
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
KP+ C CGK F++ HL +HQ++H E
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQRVHTGE 38
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
KP+ C CGK F++ HL +HQ++H E
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQRVHTGE 38
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEG 37
+P++C C + F + HL++H+ R H + P G
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQ-RVHTGEKPSG 42
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEG 145
+P++C C + F + HL++H+ R H + P G
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQ-RVHTGEKPSG 42
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 35.0 bits (79), Expect = 0.054, Method: Composition-based stats.
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
KP+ CS CGK F R HL H++IH
Sbjct: 11 KPYKCSECGKAFHRHTHLNEHRRIH 35
Score = 35.0 bits (79), Expect = 0.054, Method: Composition-based stats.
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
KP+ CS CGK F R HL H++IH
Sbjct: 11 KPYKCSECGKAFHRHTHLNEHRRIH 35
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.0 bits (79), Expect = 0.057, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
KP+ C+ CGK F +L RHQ+IH E
Sbjct: 11 KPYKCNECGKVFRHNSYLSRHQRIHTGE 38
Score = 35.0 bits (79), Expect = 0.057, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
KP+ C+ CGK F +L RHQ+IH E
Sbjct: 11 KPYKCNECGKVFRHNSYLSRHQRIHTGE 38
>pdb|1P7A|A Chain A, Solution Stucture Of The Third Zinc Finger From Bklf
Length = 37
Score = 35.0 bits (79), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 108 GIDVVRPFQCDVCNQGFVRKEHLVRHRKR 136
G ++PFQC C++ F R +HL HRKR
Sbjct: 5 GSTGIKPFQCPDCDRSFSRSDHLALHRKR 33
Score = 34.7 bits (78), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 4 VRPFQCDVCNQGFVRKEHLVRHRKR 28
++PFQC C++ F R +HL HRKR
Sbjct: 9 IKPFQCPDCDRSFSRSDHLALHRKR 33
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
KPF C C ++F+R +HL H++ H
Sbjct: 10 KPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
KPF C C ++F+R +HL H++ H
Sbjct: 10 KPFQCPDCDRSFSRSDHLALHRKRH 34
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.0 bits (79), Expect = 0.061, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 42 PFSCSVCGKTFTRREHLRRHQQIHARE 68
PF CS CGK FT + +L HQ+IH E
Sbjct: 12 PFICSECGKVFTHKTNLIIHQKIHTGE 38
Score = 35.0 bits (79), Expect = 0.061, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 150 PFSCSVCGKTFTRREHLRRHQQIHARE 176
PF CS CGK FT + +L HQ+IH E
Sbjct: 12 PFICSECGKVFTHKTNLIIHQKIHTGE 38
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 35.0 bits (79), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 44/98 (44%), Gaps = 22/98 (22%)
Query: 45 CSVCGKTFTRREHLRRHQQIHAREL-LQSSMDMSALTGLAEEVFPTPLRLDENVRRWVAC 103
C+ CGK F L+RHQ +H E Q + + G + LD N+R V
Sbjct: 37 CAECGKAFVESSKLKRHQLVHTGEKPFQCTFE-----GCGKR-----FSLDFNLRTHV-- 84
Query: 104 QRIEGIDVVRPFQC--DVCNQGFVR----KEHLVRHRK 135
RI D RP+ C D CN+ F + K H++ H K
Sbjct: 85 -RIHTGD--RPYVCPFDGCNKKFAQSTNLKSHILTHAK 119
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 10/60 (16%)
Query: 117 CDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV--CGKTFTRREHLRRHQQIHA 174
C C + FV L RH + H + KPF C+ CGK F+ +LR H +IH
Sbjct: 37 CAECGKAFVESSKLKRH-QLVHTGE-------KPFQCTFEGCGKRFSLDFNLRTHVRIHT 88
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 153 CSVCGKTFTRREHLRRHQQIHARE 176
C+ CGK F L+RHQ +H E
Sbjct: 37 CAECGKAFVESSKLKRHQLVHTGE 60
>pdb|1U85|A Chain A, Arg326-Trp Mutant Of The Third Zinc Finger Of Bklf
Length = 33
Score = 35.0 bits (79), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 108 GIDVVRPFQCDVCNQGFVRKEHLVRHRKR 136
G ++PFQC C+ F R +HL HRKR
Sbjct: 1 GSTGIKPFQCPDCDWSFSRSDHLALHRKR 29
Score = 34.7 bits (78), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 4 VRPFQCDVCNQGFVRKEHLVRHRKR 28
++PFQC C+ F R +HL HRKR
Sbjct: 5 IKPFQCPDCDWSFSRSDHLALHRKR 29
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
KPF C C +F+R +HL H++ H
Sbjct: 6 KPFQCPDCDWSFSRSDHLALHRKRH 30
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
KPF C C +F+R +HL H++ H
Sbjct: 6 KPFQCPDCDWSFSRSDHLALHRKRH 30
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.0 bits (79), Expect = 0.068, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
KP+ C+ CGK F++ L RHQ+IH E
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIHTGE 38
Score = 35.0 bits (79), Expect = 0.068, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
KP+ C+ CGK F++ L RHQ+IH E
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIHTGE 38
>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
441- 469) Of Human Zinc Finger Protein 268
Length = 42
Score = 34.7 bits (78), Expect = 0.073, Method: Composition-based stats.
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
KP+ CS CGK FT + L HQ IH
Sbjct: 9 KPYVCSDCGKAFTFKSQLIVHQGIH 33
Score = 34.7 bits (78), Expect = 0.073, Method: Composition-based stats.
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
KP+ CS CGK FT + L HQ IH
Sbjct: 9 KPYVCSDCGKAFTFKSQLIVHQGIH 33
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 34.7 bits (78), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
K + C VCGK F++ HL+ HQ++H E
Sbjct: 11 KCYKCDVCGKEFSQSSHLQTHQRVHTGE 38
Score = 34.7 bits (78), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
K + C VCGK F++ HL+ HQ++H E
Sbjct: 11 KCYKCDVCGKEFSQSSHLQTHQRVHTGE 38
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 7 FQCDVCNQGFVRKEHLVRHRKRAHDLDPPEG 37
++CDVC + F + HL H+ R H + P G
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQ-RVHTGEKPSG 42
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 115 FQCDVCNQGFVRKEHLVRHRKRAHDLDPPEG 145
++CDVC + F + HL H+ R H + P G
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQ-RVHTGEKPSG 42
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 34.7 bits (78), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
KPF C CGK FT+ L HQ++H E
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVHTGE 38
Score = 34.7 bits (78), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
KPF C CGK FT+ L HQ++H E
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVHTGE 38
>pdb|2YU5|A Chain A, Solution Structure Of The Zf-C2h2 Domain (669-699aa) In
Zinc Finger Protein 473
Length = 44
Score = 34.7 bits (78), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 42 PFSCSVCGKTFTRREHLRRHQQIHARELLQSS 73
PF CS C + FT+R +L +H++ HAR+ SS
Sbjct: 12 PFKCSKCDRVFTQRNYLVQHERTHARKSGPSS 43
Score = 34.7 bits (78), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 150 PFSCSVCGKTFTRREHLRRHQQIHARELLQSS 181
PF CS C + FT+R +L +H++ HAR+ SS
Sbjct: 12 PFKCSKCDRVFTQRNYLVQHERTHARKSGPSS 43
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
KP+ C VCGK F HL +H +H+ E
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQHHSVHSGE 38
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
KP+ C VCGK F HL +H +H+ E
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQHHSVHSGE 38
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEG 37
+P++C VC + F HLV+H H + P G
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQHHS-VHSGERPSG 42
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEG 145
+P++C VC + F HLV+H H + P G
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQHHS-VHSGERPSG 42
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From
Human Zinc Finger Protein 224
Length = 46
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
KPF C CGK F+RR L H ++H E
Sbjct: 11 KPFKCVECGKGFSRRSALNVHHKLHTGE 38
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
KPF C CGK F+RR L H ++H E
Sbjct: 11 KPFKCVECGKGFSRRSALNVHHKLHTGE 38
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.9 bits (76), Expect = 0.12, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
KPF C+ CGK+F+ L HQ+IH E
Sbjct: 11 KPFECAECGKSFSISSQLATHQRIHTGE 38
Score = 33.9 bits (76), Expect = 0.12, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
KPF C+ CGK+F+ L HQ+IH E
Sbjct: 11 KPFECAECGKSFSISSQLATHQRIHTGE 38
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 33.9 bits (76), Expect = 0.13, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
KP+ C CGK F ++ +L +HQ+IH E
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGE 38
Score = 33.9 bits (76), Expect = 0.13, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
KP+ C CGK F ++ +L +HQ+IH E
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGE 38
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 8/63 (12%)
Query: 6 PFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIH 65
P +C+VC + F RK+ L H R H KP+ C C L +H +IH
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHM-RCH-------TGVKPYKCKTCDYAAADSSSLNKHLRIH 59
Query: 66 ARE 68
+ E
Sbjct: 60 SDE 62
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 8/63 (12%)
Query: 114 PFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIH 173
P +C+VC + F RK+ L H R H KP+ C C L +H +IH
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHM-RCH-------TGVKPYKCKTCDYAAADSSSLNKHLRIH 59
Query: 174 ARE 176
+ E
Sbjct: 60 SDE 62
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 41/116 (35%), Gaps = 31/116 (26%)
Query: 38 AEAKPFSCSVCGKTFTRREHLRRHQQIHA-------RELLQSSMDMSALTGLAEEVFPTP 90
+ P C VCGK F+R++ L+ H + H + ++ D S+L
Sbjct: 4 GSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLN--------KH 55
Query: 91 LRLDENVRRWVACQRIEGIDVVRPFQCDVCNQGFVRKEHLVRH-RKRAHDLDPPEG 145
LR+ + RPF+C +C L H R D P G
Sbjct: 56 LRIHSD---------------ERPFKCQICPYASRNSSQLTVHLRSHTGDSGPSSG 96
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 146 AEAKPFSCSVCGKTFTRREHLRRHQQIHA 174
+ P C VCGK F+R++ L+ H + H
Sbjct: 4 GSSGPHKCEVCGKCFSRKDKLKTHMRCHT 32
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
KP+ C CGK + RR +L HQ++H E
Sbjct: 11 KPYKCEDCGKGYNRRLNLDMHQRVHMGE 38
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
KP+ C CGK + RR +L HQ++H E
Sbjct: 11 KPYKCEDCGKGYNRRLNLDMHQRVHMGE 38
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
KP+ C CGK F L RHQ+IH E
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIHTGE 38
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
KP+ C CGK F L RHQ+IH E
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIHTGE 38
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEG 37
+P+ CD C + F LVRH +R H + P G
Sbjct: 11 KPYVCDYCGKAFGLSAELVRH-QRIHTGEKPSG 42
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEG 145
+P+ CD C + F LVRH +R H + P G
Sbjct: 11 KPYVCDYCGKAFGLSAELVRH-QRIHTGEKPSG 42
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
KP C+ CGKTF + L +HQ+IH+ E
Sbjct: 9 KPLVCNECGKTFRQSSCLSKHQRIHSGE 36
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
KP C+ CGKTF + L +HQ+IH+ E
Sbjct: 9 KPLVCNECGKTFRQSSCLSKHQRIHSGE 36
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 33.5 bits (75), Expect = 0.16, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
KP+ C+ CGKTF+++ L HQ+ H E
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGE 38
Score = 33.5 bits (75), Expect = 0.16, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
KP+ C+ CGKTF+++ L HQ+ H E
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGE 38
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
KPF C+ CGK+F + +L HQ+IH E
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQRIHTGE 38
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
KPF C+ CGK+F + +L HQ+IH E
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQRIHTGE 38
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 33.1 bits (74), Expect = 0.22, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
KP+ C+ CGK F+ R L HQ IH
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIH 35
Score = 33.1 bits (74), Expect = 0.22, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
KP+ C+ CGK F+ R L HQ IH
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIH 35
>pdb|1ARD|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 42 PFSCSVCGKTFTRREHLRRHQQIHARE 68
F C VC + F R+EHL+RH + H E
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNE 28
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 150 PFSCSVCGKTFTRREHLRRHQQIHARE 176
F C VC + F R+EHL+RH + H E
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNE 28
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 6 PFQCDVCNQGFVRKEHLVRH 25
F C+VC + F R+EHL RH
Sbjct: 2 SFVCEVCTRAFARQEHLKRH 21
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 114 PFQCDVCNQGFVRKEHLVRH 133
F C+VC + F R+EHL RH
Sbjct: 2 SFVCEVCTRAFARQEHLKRH 21
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 36 EGAEAKPFSCSVCGKTFTRREHLRRHQQIHARE 68
G KPF C C K+F +R L H+ IH E
Sbjct: 6 SGTAEKPFRCDTCDKSFRQRSALNSHRMIHTGE 38
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 144 EGAEAKPFSCSVCGKTFTRREHLRRHQQIHARE 176
G KPF C C K+F +R L H+ IH E
Sbjct: 6 SGTAEKPFRCDTCDKSFRQRSALNSHRMIHTGE 38
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEG 37
+PF+CD C++ F ++ L HR H + P G
Sbjct: 11 KPFRCDTCDKSFRQRSALNSHRM-IHTGEKPSG 42
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEG 145
+PF+CD C++ F ++ L HR H + P G
Sbjct: 11 KPFRCDTCDKSFRQRSALNSHRM-IHTGEKPSG 42
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 33.1 bits (74), Expect = 0.25, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
KP+SC+ CGK FT + L H+ +H
Sbjct: 9 KPYSCNECGKAFTFKSQLIVHKGVH 33
Score = 33.1 bits (74), Expect = 0.25, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
KP+SC+ CGK FT + L H+ +H
Sbjct: 9 KPYSCNECGKAFTFKSQLIVHKGVH 33
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 33.1 bits (74), Expect = 0.26, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 40 AKPFSCSVCGKTFTRREHLRRH-QQIHARE 68
KP+ C CGK F+R +HL H +Q+H E
Sbjct: 10 GKPYICQSCGKGFSRPDHLNGHIKQVHTSE 39
Score = 33.1 bits (74), Expect = 0.26, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 148 AKPFSCSVCGKTFTRREHLRRH-QQIHARE 176
KP+ C CGK F+R +HL H +Q+H E
Sbjct: 10 GKPYICQSCGKGFSRPDHLNGHIKQVHTSE 39
Score = 31.2 bits (69), Expect = 0.91, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 3 VVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPP 35
V +P+ C C +GF R +HL H K+ H + P
Sbjct: 9 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERP 41
Score = 31.2 bits (69), Expect = 0.91, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 111 VVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPP 143
V +P+ C C +GF R +HL H K+ H + P
Sbjct: 9 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERP 41
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
+P C+ CGK+F + HL +HQ+IH E
Sbjct: 11 RPHKCNECGKSFIQSAHLIQHQRIHTGE 38
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
+P C+ CGK+F + HL +HQ+IH E
Sbjct: 11 RPHKCNECGKSFIQSAHLIQHQRIHTGE 38
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEG 37
RP +C+ C + F++ HL++H +R H + P G
Sbjct: 11 RPHKCNECGKSFIQSAHLIQH-QRIHTGEKPSG 42
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEG 145
RP +C+ C + F++ HL++H +R H + P G
Sbjct: 11 RPHKCNECGKSFIQSAHLIQH-QRIHTGEKPSG 42
>pdb|2EOJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
355- 385) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARELLQSS 73
P+ C CGK F+R++ L HQ+ H+ + SS
Sbjct: 11 NPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARELLQSS 181
P+ C CGK F+R++ L HQ+ H+ + SS
Sbjct: 11 NPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.7 bits (73), Expect = 0.30, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
K + C+ CGK F+R L +HQ+IH E
Sbjct: 11 KRYKCNECGKVFSRNSQLSQHQKIHTGE 38
Score = 32.7 bits (73), Expect = 0.30, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
K + C+ CGK F+R L +HQ+IH E
Sbjct: 11 KRYKCNECGKVFSRNSQLSQHQKIHTGE 38
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.7 bits (73), Expect = 0.30, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
KP++C CGK F L+ HQ+IH E
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQRIHTGE 38
Score = 32.7 bits (73), Expect = 0.30, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
KP++C CGK F L+ HQ+IH E
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQRIHTGE 38
>pdb|2EM8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
423- 455) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARELLQS 72
KP+ C CGK + RR L HQ++H E L
Sbjct: 11 KPYKCVECGKGYKRRLDLDFHQRVHTGEKLSG 42
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARELLQS 180
KP+ C CGK + RR L HQ++H E L
Sbjct: 11 KPYKCVECGKGYKRRLDLDFHQRVHTGEKLSG 42
>pdb|2EOO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
425- 457) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 32.3 bits (72), Expect = 0.35, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
+P+ C+ CGK F R HL H + H RE
Sbjct: 11 RPYGCNECGKNFGRHSHLIEHLKRHFRE 38
Score = 32.3 bits (72), Expect = 0.35, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
+P+ C+ CGK F R HL H + H RE
Sbjct: 11 RPYGCNECGKNFGRHSHLIEHLKRHFRE 38
Score = 29.6 bits (65), Expect = 2.5, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKR 28
RP+ C+ C + F R HL+ H KR
Sbjct: 11 RPYGCNECGKNFGRHSHLIEHLKR 34
Score = 29.6 bits (65), Expect = 2.5, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKR 136
RP+ C+ C + F R HL+ H KR
Sbjct: 11 RPYGCNECGKNFGRHSHLIEHLKR 34
>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
551- 583) Of Human Zinc Finger Protein 268
Length = 46
Score = 32.3 bits (72), Expect = 0.39, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 42 PFSCSVCGKTFTRREHLRRHQQIHARE 68
P+ C CGK F+R+ L HQ+ HA E
Sbjct: 12 PYECHECGKAFSRKYQLISHQRTHAGE 38
Score = 32.3 bits (72), Expect = 0.39, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 150 PFSCSVCGKTFTRREHLRRHQQIHARE 176
P+ C CGK F+R+ L HQ+ HA E
Sbjct: 12 PYECHECGKAFSRKYQLISHQRTHAGE 38
Score = 27.7 bits (60), Expect = 8.9, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 6 PFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEA 40
P++C C + F RK L+ H +R H + P G +
Sbjct: 12 PYECHECGKAFSRKYQLISH-QRTHAGEKPSGPSS 45
Score = 27.7 bits (60), Expect = 8.9, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 114 PFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEA 148
P++C C + F RK L+ H +R H + P G +
Sbjct: 12 PYECHECGKAFSRKYQLISH-QRTHAGEKPSGPSS 45
>pdb|2KVF|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
Zinc Finger Protein
Length = 28
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHA 66
+P+SCSVCGK F+ + + H ++H
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHT 27
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHA 174
+P+SCSVCGK F+ + + H ++H
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHT 27
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide
Reveals An Extension To The Rules For Zinc-FingerDNA
RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide
Reveals An Extension To The Rules For Zinc-FingerDNA
RECOGNITION
Length = 66
Score = 32.3 bits (72), Expect = 0.41, Method: Composition-based stats.
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 7 FQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 64
++C VC++ + + RH +H + K + C C K FTR++++ H +I
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRN------VKVYPCPFCFKEFTRKDNMTAHVKI 62
Score = 32.3 bits (72), Expect = 0.41, Method: Composition-based stats.
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 115 FQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 172
++C VC++ + + RH +H + K + C C K FTR++++ H +I
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRN------VKVYPCPFCFKEFTRKDNMTAHVKI 62
>pdb|2EOY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
557- 589) Of Human Zinc Finger Protein 473
Length = 46
Score = 32.3 bits (72), Expect = 0.42, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 37 GAEAKPFSCSVCGKTFTRREHLRRHQQIHAR 67
G + K F C+ C KTF+ ++L +H++IH R
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHERIHTR 37
Score = 32.3 bits (72), Expect = 0.42, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 145 GAEAKPFSCSVCGKTFTRREHLRRHQQIHAR 175
G + K F C+ C KTF+ ++L +H++IH R
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHERIHTR 37
>pdb|2EMB|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
342- 372) Of Human Zinc Finger Protein 473
Length = 44
Score = 32.3 bits (72), Expect = 0.44, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 37 GAEAKPFSCSVCGKTFTRREHLRRHQQIHA 66
G K + CS C TF R+HL +HQ+ HA
Sbjct: 7 GHTRKRYECSKCQATFNLRKHLIQHQKTHA 36
Score = 32.3 bits (72), Expect = 0.44, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 145 GAEAKPFSCSVCGKTFTRREHLRRHQQIHA 174
G K + CS C TF R+HL +HQ+ HA
Sbjct: 7 GHTRKRYECSKCQATFNLRKHLIQHQKTHA 36
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.3 bits (72), Expect = 0.45, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
KPF C CGK F + HL H +IH E
Sbjct: 11 KPFKCKECGKAFRQNIHLASHLRIHTGE 38
Score = 32.3 bits (72), Expect = 0.45, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
KPF C CGK F + HL H +IH E
Sbjct: 11 KPFKCKECGKAFRQNIHLASHLRIHTGE 38
>pdb|1SP2|A Chain A, Nmr Structure Of A Zinc Finger Domain From Transcription
Factor Sp1f2, Minimized Average Structure
pdb|1VA2|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna
Binding Domain (Zinc Finger 2)
Length = 31
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 41 KPFSC--SVCGKTFTRREHLRRHQQIHARE 68
+PF C S CGK FTR + L+RH++ H E
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGE 30
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 149 KPFSC--SVCGKTFTRREHLRRHQQIHARE 176
+PF C S CGK FTR + L+RH++ H E
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGE 30
>pdb|1ARF|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 32.0 bits (71), Expect = 0.55, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 43 FSCSVCGKTFTRREHLRRHQQIHARE 68
F C VC + F R+E+L+RH + H E
Sbjct: 3 FVCEVCTRAFARQEYLKRHYRSHTNE 28
Score = 32.0 bits (71), Expect = 0.55, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 151 FSCSVCGKTFTRREHLRRHQQIHARE 176
F C VC + F R+E+L+RH + H E
Sbjct: 3 FVCEVCTRAFARQEYLKRHYRSHTNE 28
>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
Suppressor Protein (Wt1) Finger 3
Length = 29
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
KPF C C + F+R +HL+ H + H E
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTGE 28
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
KPF C C + F+R +HL+ H + H E
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTGE 28
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 5 RPFQCDVCNQGFVRKEHLVRH 25
+PFQC C + F R +HL H
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTH 21
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 113 RPFQCDVCNQGFVRKEHLVRH 133
+PFQC C + F R +HL H
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTH 21
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 32.0 bits (71), Expect = 0.55, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
KP+ CS CGK F+ + +L H + H+ E
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGE 38
Score = 32.0 bits (71), Expect = 0.55, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
KP+ CS CGK F+ + +L H + H+ E
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGE 38
>pdb|2YTT|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
204- 236) Of Human Zinc Finger Protein 473
Length = 46
Score = 32.0 bits (71), Expect = 0.59, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
KP+ CS CGK+F+ L +H H RE
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITHTRE 38
Score = 32.0 bits (71), Expect = 0.59, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
KP+ CS CGK+F+ L +H H RE
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITHTRE 38
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
KP+ C VC K F+ L +HQ++H+ E
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQRVHSGE 38
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
KP+ C VC K F+ L +HQ++H+ E
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQRVHSGE 38
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEG 37
+P++CDVC + F L +H +R H + P G
Sbjct: 11 KPYECDVCRKAFSHHASLTQH-QRVHSGEKPSG 42
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEG 145
+P++CDVC + F L +H +R H + P G
Sbjct: 11 KPYECDVCRKAFSHHASLTQH-QRVHSGEKPSG 42
>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
367- 399) Of Human Zinc Finger Protein 224
Length = 46
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
KP++C CGK+F L +HQ++H+ E
Sbjct: 11 KPYNCKECGKSFRWASCLLKHQRVHSGE 38
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
KP++C CGK+F L +HQ++H+ E
Sbjct: 11 KPYNCKECGKSFRWASCLLKHQRVHSGE 38
>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
768- 800) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 40 AKPFSCSVCGKTFTRREHLRRHQQIHARE 68
K C CG+ FT + HL +HQ+IH E
Sbjct: 10 TKSHQCHECGRGFTLKSHLNQHQRIHTGE 38
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 148 AKPFSCSVCGKTFTRREHLRRHQQIHARE 176
K C CG+ FT + HL +HQ+IH E
Sbjct: 10 TKSHQCHECGRGFTLKSHLNQHQRIHTGE 38
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 4 VRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEG 37
+ QC C +GF K HL +H +R H + P G
Sbjct: 10 TKSHQCHECGRGFTLKSHLNQH-QRIHTGEKPSG 42
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 112 VRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEG 145
+ QC C +GF K HL +H +R H + P G
Sbjct: 10 TKSHQCHECGRGFTLKSHLNQH-QRIHTGEKPSG 42
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
KP+ C CGK+F++R L H+++H
Sbjct: 9 KPYQCKECGKSFSQRGSLAVHERLH 33
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
KP+ C CGK+F++R L H+++H
Sbjct: 9 KPYQCKECGKSFSQRGSLAVHERLH 33
>pdb|1U86|A Chain A, 321-Tw-322 Insertion Mutant Of The Third Zinc Finger Of
Bklf
Length = 35
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 108 GIDVVRPFQCDV--CNQGFVRKEHLVRHRKR 136
G ++PFQC C++ F R +HL HRKR
Sbjct: 1 GSTGIKPFQCTWPDCDRSFSRSDHLALHRKR 31
Score = 31.2 bits (69), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Query: 4 VRPFQCDV--CNQGFVRKEHLVRHRKR 28
++PFQC C++ F R +HL HRKR
Sbjct: 5 IKPFQCTWPDCDRSFSRSDHLALHRKR 31
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 31.6 bits (70), Expect = 0.70, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARELLQSS 73
KP+ C+ CGK F + L H++IH E SS
Sbjct: 9 KPYVCNECGKAFGLKSQLIIHERIHTGESGPSS 41
Score = 31.6 bits (70), Expect = 0.70, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARELLQSS 181
KP+ C+ CGK F + L H++IH E SS
Sbjct: 9 KPYVCNECGKAFGLKSQLIIHERIHTGESGPSS 41
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 37/102 (36%), Gaps = 18/102 (17%)
Query: 43 FSCSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAEEVFP-TPLRLDENVRRWV 101
+ C VC +++ LRRH IH S + E+VFP R +
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIH-------SWEKKYPCRYCEKVFPLAEYRTKHEIHH-- 73
Query: 102 ACQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPP 143
R +QC C + F+ + + H K H DP
Sbjct: 74 --------TGERRYQCLACGKSFINYQFMSSHIKSVHSQDPS 107
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 31.6 bits (70), Expect = 0.71, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
KP+ C+ CGK F+ L HQ IH E
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGE 38
Score = 31.6 bits (70), Expect = 0.71, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
KP+ C+ CGK F+ L HQ IH E
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGE 38
>pdb|2ELS|A Chain A, Solution Structure Of The 2nd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 31.6 bits (70), Expect = 0.74, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 37 GAEAKPFSCSVCGKTFTRREHLRRHQQIHARE 68
G+ K F+C C K F + L+ H +IH E
Sbjct: 4 GSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNE 35
Score = 31.6 bits (70), Expect = 0.74, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 145 GAEAKPFSCSVCGKTFTRREHLRRHQQIHARE 176
G+ K F+C C K F + L+ H +IH E
Sbjct: 4 GSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNE 35
>pdb|1PAA|A Chain A, Structure Of A Histidine-X4-Histidine Zinc Finger
Domain: Insights Into Adr1-Uas1 Protein-Dna Recognition
Length = 30
Score = 31.2 bits (69), Expect = 0.79, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Query: 43 FSCSVCGKTFTRREHLRRH-QQIHAREL 69
++C +C + FTRR+ L RH Q+IH+ L
Sbjct: 3 YACGLCNRAFTRRDLLIRHAQKIHSGNL 30
Score = 31.2 bits (69), Expect = 0.79, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Query: 151 FSCSVCGKTFTRREHLRRH-QQIHAREL 177
++C +C + FTRR+ L RH Q+IH+ L
Sbjct: 3 YACGLCNRAFTRRDLLIRHAQKIHSGNL 30
Score = 30.8 bits (68), Expect = 1.0, Method: Composition-based stats.
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 7 FQCDVCNQGFVRKEHLVRHRKRAH 30
+ C +CN+ F R++ L+RH ++ H
Sbjct: 3 YACGLCNRAFTRRDLLIRHAQKIH 26
Score = 30.8 bits (68), Expect = 1.0, Method: Composition-based stats.
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 115 FQCDVCNQGFVRKEHLVRHRKRAH 138
+ C +CN+ F R++ L+RH ++ H
Sbjct: 3 YACGLCNRAFTRRDLLIRHAQKIH 26
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 31.2 bits (69), Expect = 0.79, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
KP+ C+ CGK F +L HQ IH E
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQVIHTGE 38
Score = 31.2 bits (69), Expect = 0.79, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
KP+ C+ CGK F +L HQ IH E
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQVIHTGE 38
>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
Length = 29
Score = 31.2 bits (69), Expect = 0.81, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 42 PFSCSVCGKTFTRREHLRRHQQIHARE 68
P C CGK FT +L+RH +IH+ E
Sbjct: 2 PLKCRECGKQFTTSGNLKRHLRIHSGE 28
Score = 31.2 bits (69), Expect = 0.81, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 150 PFSCSVCGKTFTRREHLRRHQQIHARE 176
P C CGK FT +L+RH +IH+ E
Sbjct: 2 PLKCRECGKQFTTSGNLKRHLRIHSGE 28
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 31.2 bits (69), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
KP+ C CGK + + +L HQ++H E
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKVHTGE 38
Score = 31.2 bits (69), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
KP+ C CGK + + +L HQ++H E
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKVHTGE 38
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 31.2 bits (69), Expect = 0.83, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARELLQSS 73
KP+ C+ CGK F + L HQ+ H E SS
Sbjct: 9 KPYECTDCGKAFGLKSQLIIHQRTHTGESGPSS 41
Score = 31.2 bits (69), Expect = 0.83, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARELLQSS 181
KP+ C+ CGK F + L HQ+ H E SS
Sbjct: 9 KPYECTDCGKAFGLKSQLIIHQRTHTGESGPSS 41
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 31.2 bits (69), Expect = 0.85, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARELLQSS 73
KP+ C CGK FT+ L H+++H E SS
Sbjct: 9 KPYVCQECGKAFTQSSCLSIHRRVHTGESGPSS 41
Score = 31.2 bits (69), Expect = 0.85, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARELLQSS 181
KP+ C CGK FT+ L H+++H E SS
Sbjct: 9 KPYVCQECGKAFTQSSCLSIHRRVHTGESGPSS 41
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 31.2 bits (69), Expect = 0.92, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
KP+ CS CGK F + +L H + H E
Sbjct: 9 KPYGCSECGKAFRSKSYLIIHMRTHTGE 36
Score = 31.2 bits (69), Expect = 0.92, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
KP+ CS CGK F + +L H + H E
Sbjct: 9 KPYGCSECGKAFRSKSYLIIHMRTHTGE 36
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 43 FSCSVCGKTFTRREHLRRHQQIHARE 68
+ CS CGK F R+ L HQ+IH E
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGE 38
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 151 FSCSVCGKTFTRREHLRRHQQIHARE 176
+ CS CGK F R+ L HQ+IH E
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGE 38
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEG 37
R ++C C + F RK L+ H +R H + P G
Sbjct: 11 RHYECSECGKAFARKSTLIMH-QRIHTGEKPSG 42
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEG 145
R ++C C + F RK L+ H +R H + P G
Sbjct: 11 RHYECSECGKAFARKSTLIMH-QRIHTGEKPSG 42
>pdb|2EPP|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 278
Length = 66
Score = 31.2 bits (69), Expect = 0.99, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 39 EAKPFSCSVCGKTFTRREHLRRHQQIHARELLQ 71
EA C +CGK FT LR+H+ H LQ
Sbjct: 10 EAGILPCGLCGKVFTDANRLRQHEAQHGVTSLQ 42
Score = 31.2 bits (69), Expect = 0.99, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 147 EAKPFSCSVCGKTFTRREHLRRHQQIHARELLQ 179
EA C +CGK FT LR+H+ H LQ
Sbjct: 10 EAGILPCGLCGKVFTDANRLRQHEAQHGVTSLQ 42
>pdb|2EOH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
780- 812) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.8 bits (68), Expect = 1.0, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
KP+ C C KTF + HL +H+++H E
Sbjct: 11 KPYECKECRKTFIQIGHLNQHKRVHTGE 38
Score = 30.8 bits (68), Expect = 1.0, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
KP+ C C KTF + HL +H+++H E
Sbjct: 11 KPYECKECRKTFIQIGHLNQHKRVHTGE 38
>pdb|2EPX|A Chain A, Solution Structure Of The Third C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 47
Score = 30.8 bits (68), Expect = 1.1, Method: Composition-based stats.
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEA 40
+P++C C + F++ L+RH + H + P G +
Sbjct: 11 KPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSS 46
Score = 30.8 bits (68), Expect = 1.1, Method: Composition-based stats.
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEA 148
+P++C C + F++ L+RH + H + P G +
Sbjct: 11 KPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSS 46
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.8 bits (68), Expect = 1.1, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
KP+ C+ CGK F R L HQ H+ E
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATHSGE 38
Score = 30.8 bits (68), Expect = 1.1, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
KP+ C+ CGK F R L HQ H+ E
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATHSGE 38
>pdb|2EN2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
598- 626) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
KP+ C CG F + HLR H IH
Sbjct: 10 KPYKCETCGARFVQVAHLRAHVLIH 34
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
KP+ C CG F + HLR H IH
Sbjct: 10 KPYKCETCGARFVQVAHLRAHVLIH 34
>pdb|2YTE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
484- 512) Of Human Zinc Finger Protein 473
Length = 42
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHA 66
KP+SC+ C +TF+ L +HQ++H
Sbjct: 9 KPYSCAECKETFSDNNRLVQHQKMHT 34
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHA 174
KP+SC+ C +TF+ L +HQ++H
Sbjct: 9 KPYSCAECKETFSDNNRLVQHQKMHT 34
>pdb|2EPR|A Chain A, Solution Structure Of The Secound Zinc Finger Domain Of
Zinc Finger Protein 278
Length = 48
Score = 30.8 bits (68), Expect = 1.3, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 37 GAEAKPFSCSVCGKTFTRREHLRRHQQIHARELLQSS 73
G K +C +CGK F HL RH+ H+ E SS
Sbjct: 7 GRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSS 43
Score = 30.8 bits (68), Expect = 1.3, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 145 GAEAKPFSCSVCGKTFTRREHLRRHQQIHARELLQSS 181
G K +C +CGK F HL RH+ H+ E SS
Sbjct: 7 GRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSS 43
>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 30.4 bits (67), Expect = 1.4, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
KP+ CS C KTF+ + L HQ+ H
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSH 35
Score = 30.4 bits (67), Expect = 1.4, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
KP+ CS C KTF+ + L HQ+ H
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSH 35
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.4 bits (67), Expect = 1.4, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
K F C+ C KTFT+ L HQ+IH E
Sbjct: 11 KLFKCNECKKTFTQSSSLTVHQRIHTGE 38
Score = 30.4 bits (67), Expect = 1.4, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
K F C+ C KTFT+ L HQ+IH E
Sbjct: 11 KLFKCNECKKTFTQSSSLTVHQRIHTGE 38
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.4 bits (67), Expect = 1.5, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
KPF C CGK F+ L +H++IH E
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQHRRIHTGE 38
Score = 30.4 bits (67), Expect = 1.5, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
KPF C CGK F+ L +H++IH E
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQHRRIHTGE 38
>pdb|1XDN|A Chain A, High Resolution Crystal Structure Of An Editosome Enzyme
From Trypanosoma Brucei: Rna Editing Ligase 1
Length = 277
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 13/77 (16%)
Query: 74 MDMSALTGLAEEVFPTPLRLDE------NVRRWVACQRIEGIDVVRPFQCDVCNQGFVRK 127
MD S + E P+ R+ + WVAC+++ G + F + NQG
Sbjct: 3 MDQSDFSPYIEIDLPSESRIQSLHKSGLAAQEWVACEKVHGTN----FGIYLINQG---D 55
Query: 128 EHLVRHRKRAHDLDPPE 144
+VR KR+ DP E
Sbjct: 56 HEVVRFAKRSGIXDPNE 72
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 30.0 bits (66), Expect = 2.0, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
KPF CS C K F + +L HQ+ H E
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRTHTGE 38
Score = 30.0 bits (66), Expect = 2.0, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
KPF CS C K F + +L HQ+ H E
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRTHTGE 38
Score = 28.1 bits (61), Expect = 8.5, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEA 40
+PF+C C + F K +L+ H +R H + P G +
Sbjct: 11 KPFECSECQKAFNTKSNLIVH-QRTHTGEKPSGPSS 45
Score = 28.1 bits (61), Expect = 8.5, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEA 148
+PF+C C + F K +L+ H +R H + P G +
Sbjct: 11 KPFECSECQKAFNTKSNLIVH-QRTHTGEKPSGPSS 45
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2
Domains From Human Krueppel-Like Factor 10
Length = 72
Score = 30.0 bits (66), Expect = 2.0, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 10/56 (17%)
Query: 12 CNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV--CGKTFTRREHLRRHQQIH 65
C + + + HL H R H KPFSCS C + F R + L RH++ H
Sbjct: 25 CGKTYFKSSHLKAH-TRTH-------TGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 30.0 bits (66), Expect = 2.0, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 10/56 (17%)
Query: 120 CNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV--CGKTFTRREHLRRHQQIH 173
C + + + HL H R H KPFSCS C + F R + L RH++ H
Sbjct: 25 CGKTYFKSSHLKAH-TRTH-------TGEKPFSCSWKGCERRFARSDELSRHRRTH 72
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
KP+ C VC K+F L HQ+IH E
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQRIHTGE 38
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
KP+ C VC K+F L HQ+IH E
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQRIHTGE 38
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEA 40
+P++CDVC++ F L H+ R H + P G +
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQ-RIHTGEKPSGPSS 45
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEA 148
+P++CDVC++ F L H+ R H + P G +
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQ-RIHTGEKPSGPSS 45
>pdb|2EL6|A Chain A, Solution Structure Of The 21th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 42 PFSCSVCGKTFTRREHLRRHQQIHARE 68
P+ CS C K+F+ + L HQ++H RE
Sbjct: 12 PYKCSQCEKSFSGKLRLLVHQRMHTRE 38
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 150 PFSCSVCGKTFTRREHLRRHQQIHARE 176
P+ CS C K+F+ + L HQ++H RE
Sbjct: 12 PYKCSQCEKSFSGKLRLLVHQRMHTRE 38
>pdb|1ARE|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 42 PFSCSVCGKTFTRREHLRRHQQIHARE 68
F C VC + F R+E L+RH + H E
Sbjct: 2 SFVCEVCTRAFARQEALKRHYRSHTNE 28
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 150 PFSCSVCGKTFTRREHLRRHQQIHARE 176
F C VC + F R+E L+RH + H E
Sbjct: 2 SFVCEVCTRAFARQEALKRHYRSHTNE 28
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 54/138 (39%), Gaps = 22/138 (15%)
Query: 41 KPFSCSV--CGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVR 98
KPF C C K FT HL RH H E + + + + F T + ++
Sbjct: 41 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGE-----KNFTCDSDGCDLRFTTKANMKKHFN 95
Query: 99 RWVACQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSC--SVC 156
R+ I+ V F+ C + F + L H+ + P+ C C
Sbjct: 96 RF---HNIKICVYVCHFE--NCGKAFKKHNQLKVHQ--------FSHTQQLPYECPHEGC 142
Query: 157 GKTFTRREHLRRHQQIHA 174
K F+ L+RH+++HA
Sbjct: 143 DKRFSLPSRLKRHEKVHA 160
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 10/69 (14%)
Query: 5 RPFQCDV--CNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV--CGKTFTRREHLRR 60
+ F CD C+ F K ++ +H R H++ + + C CGK F + L+
Sbjct: 71 KNFTCDSDGCDLRFTTKANMKKHFNRFHNI------KICVYVCHFENCGKAFKKHNQLKV 124
Query: 61 HQQIHAREL 69
HQ H ++L
Sbjct: 125 HQFSHTQQL 133
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 10/69 (14%)
Query: 113 RPFQCDV--CNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV--CGKTFTRREHLRR 168
+ F CD C+ F K ++ +H R H++ + + C CGK F + L+
Sbjct: 71 KNFTCDSDGCDLRFTTKANMKKHFNRFHNI------KICVYVCHFENCGKAFKKHNQLKV 124
Query: 169 HQQIHAREL 177
HQ H ++L
Sbjct: 125 HQFSHTQQL 133
>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
724- 756) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEG 37
RP++C C + F K L+ HR R+H + P G
Sbjct: 11 RPYECIECGKAFKTKSSLICHR-RSHTGEKPSG 42
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEG 145
RP++C C + F K L+ HR R+H + P G
Sbjct: 11 RPYECIECGKAFKTKSSLICHR-RSHTGEKPSG 42
>pdb|2EPQ|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of
Zinc Finger Protein 278
Length = 45
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARELLQS 72
KP+SC VCG F R++ + H + H + +S
Sbjct: 9 KPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKS 40
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARELLQS 180
KP+SC VCG F R++ + H + H + +S
Sbjct: 9 KPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKS 40
>pdb|2EPV|A Chain A, Solution Structure Of The 20th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 44
Score = 29.3 bits (64), Expect = 3.0, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHA 66
KP+ C+ CGK F + L H++ HA
Sbjct: 11 KPYECNECGKAFIWKSLLIVHERTHA 36
Score = 29.3 bits (64), Expect = 3.0, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHA 174
KP+ C+ CGK F + L H++ HA
Sbjct: 11 KPYECNECGKAFIWKSLLIVHERTHA 36
>pdb|2EQ4|A Chain A, Solution Structure Of The 11th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 224
Length = 46
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
K ++C CGK+F+R L +H+++H+ E
Sbjct: 11 KLYNCKECGKSFSRAPCLLKHERLHSGE 38
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
K ++C CGK+F+R L +H+++H+ E
Sbjct: 11 KLYNCKECGKSFSRAPCLLKHERLHSGE 38
>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
495- 525) Of Human Zinc Finger Protein 268
Length = 44
Score = 29.3 bits (64), Expect = 3.4, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARELLQSS 73
KP+ C+ CGK F + +L H + H E SS
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 29.3 bits (64), Expect = 3.4, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARELLQSS 181
KP+ C+ CGK F + +L H + H E SS
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
719- 751) Of Human Zinc Finger Protein 268
Length = 46
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
KP C CGK+F+ L HQ+IH E
Sbjct: 11 KPHECRECGKSFSFNSQLIVHQRIHTGE 38
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
KP C CGK+F+ L HQ+IH E
Sbjct: 11 KPHECRECGKSFSFNSQLIVHQRIHTGE 38
>pdb|2EM7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
339- 371) Of Human Zinc Finger Protein 224
Length = 46
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
KP+ C CGK F R L H +H E
Sbjct: 11 KPYKCEECGKGFICRRDLYTHHMVHTGE 38
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
KP+ C CGK F R L H +H E
Sbjct: 11 KPYKCEECGKGFICRRDLYTHHMVHTGE 38
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 41 KPFSCSV--CGKTFTRREHLRRHQQIHARE 68
KPF C CGK F R E+L+ H++ H E
Sbjct: 89 KPFPCPFPGCGKIFARSENLKIHKRTHTGE 118
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 149 KPFSCSV--CGKTFTRREHLRRHQQIHARE 176
KPF C CGK F R E+L+ H++ H E
Sbjct: 89 KPFPCPFPGCGKIFARSENLKIHKRTHTGE 118
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
547- 579) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 43 FSCSVCGKTFTRREHLRRHQQIHARE 68
+ CS CGK F ++ L HQ+IH E
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGE 38
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 151 FSCSVCGKTFTRREHLRRHQQIHARE 176
+ CS CGK F ++ L HQ+IH E
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGE 38
>pdb|1ZFD|A Chain A, Swi5 Zinc Finger Domain 2, Nmr, 45 Structures
Length = 32
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Query: 5 RPFQCD--VCNQGFVRKEHLVRHRK 27
RP+ CD C++ FVR L+RH+K
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKK 26
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Query: 113 RPFQCD--VCNQGFVRKEHLVRHRK 135
RP+ CD C++ FVR L+RH+K
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKK 26
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
411- 441) Of Human Zinc Finger Protein 268
Length = 44
Score = 28.9 bits (63), Expect = 4.4, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARELLQSS 73
KP+ C+ C K F + +L HQ+ H E SS
Sbjct: 11 KPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 28.9 bits (63), Expect = 4.4, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARELLQSS 181
KP+ C+ C K F + +L HQ+ H E SS
Sbjct: 11 KPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
>pdb|2ELQ|A Chain A, Solution Structure Of The 14th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 28.9 bits (63), Expect = 4.9, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 37 GAEAKPFSCSVCGKTFTRREHLRRHQQIHARE 68
G+ KPF CS+C + +L+ H H+ E
Sbjct: 4 GSSGKPFKCSLCEYATRSKSNLKAHMNRHSTE 35
Score = 28.9 bits (63), Expect = 4.9, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 145 GAEAKPFSCSVCGKTFTRREHLRRHQQIHARE 176
G+ KPF CS+C + +L+ H H+ E
Sbjct: 4 GSSGKPFKCSLCEYATRSKSNLKAHMNRHSTE 35
>pdb|1SRK|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of
Fog-1
Length = 35
Score = 28.5 bits (62), Expect = 5.1, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHAREL 69
+PF C +C FT + + RH ++H L
Sbjct: 6 RPFVCRICLSAFTTKANCARHLKVHTDTL 34
Score = 28.5 bits (62), Expect = 5.1, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHAREL 177
+PF C +C FT + + RH ++H L
Sbjct: 6 RPFVCRICLSAFTTKANCARHLKVHTDTL 34
>pdb|2ENT|A Chain A, Solution Structure Of The Second C2h2-Type Zinc Finger
Domain From Human Krueppel-Like Factor 15
Length = 48
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Query: 41 KPFSCSV--CGKTFTRREHLRRHQQIHA 66
KPF+C+ CG F+R + L RH++ H+
Sbjct: 11 KPFACTWPGCGWRFSRSDELSRHRRSHS 38
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Query: 149 KPFSCSV--CGKTFTRREHLRRHQQIHA 174
KPF+C+ CG F+R + L RH++ H+
Sbjct: 11 KPFACTWPGCGWRFSRSDELSRHRRSHS 38
>pdb|2EPY|A Chain A, Solution Structure Of The 10th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 42
Score = 28.5 bits (62), Expect = 6.0, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARELLQSS 73
K C+ CGK F+ + L HQ+IH E SS
Sbjct: 9 KLHECNNCGKAFSFKSQLIIHQRIHTGESGPSS 41
Score = 28.5 bits (62), Expect = 6.0, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARELLQSS 181
K C+ CGK F+ + L HQ+IH E SS
Sbjct: 9 KLHECNNCGKAFSFKSQLIIHQRIHTGESGPSS 41
>pdb|1BHI|A Chain A, Structure Of Transactivation Domain Of Cre-Bp1ATF-2,
Nmr, 20 Structures
Length = 38
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 38 AEAKPFSCSV--CGKTFTRREHLRRHQQIHAREL 69
++ KPF C+ CG+ FT +HL H+ H L
Sbjct: 2 SDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTL 35
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 146 AEAKPFSCSV--CGKTFTRREHLRRHQQIHAREL 177
++ KPF C+ CG+ FT +HL H+ H L
Sbjct: 2 SDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTL 35
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 28.1 bits (61), Expect = 6.9, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
KP+ C +CG F + L+ H +IH
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRIH 34
Score = 28.1 bits (61), Expect = 6.9, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
KP+ C +CG F + L+ H +IH
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRIH 34
>pdb|2ENC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
395- 427) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.1 bits (61), Expect = 6.9, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
KPF C CGK F HQ+ H+ E
Sbjct: 11 KPFKCEECGKGFYTNSQCYSHQRSHSGE 38
Score = 28.1 bits (61), Expect = 6.9, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
KPF C CGK F HQ+ H+ E
Sbjct: 11 KPFKCEECGKGFYTNSQCYSHQRSHSGE 38
>pdb|2EPC|A Chain A, Solution Structure Of Zinc Finger Domain 7 In Zinc
Finger Protein 32
Length = 42
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 42 PFSCSVCGKTFTRREHLRRHQ 62
P+ C CGK+FT+R L HQ
Sbjct: 11 PYLCGQCGKSFTQRGSLAVHQ 31
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 150 PFSCSVCGKTFTRREHLRRHQ 170
P+ C CGK+FT+R L HQ
Sbjct: 11 PYLCGQCGKSFTQRGSLAVHQ 31
>pdb|2EOU|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
370- 400) Of Human Zinc Finger Protein 473
Length = 44
Score = 27.7 bits (60), Expect = 9.5, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 16/37 (43%)
Query: 37 GAEAKPFSCSVCGKTFTRREHLRRHQQIHARELLQSS 73
GA C CGK F L HQ +HA E SS
Sbjct: 7 GAAKTTSECQECGKIFRHSSLLIEHQALHAGESGPSS 43
Score = 27.7 bits (60), Expect = 9.5, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 16/37 (43%)
Query: 145 GAEAKPFSCSVCGKTFTRREHLRRHQQIHARELLQSS 181
GA C CGK F L HQ +HA E SS
Sbjct: 7 GAAKTTSECQECGKIFRHSSLLIEHQALHAGESGPSS 43
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,292,200
Number of Sequences: 62578
Number of extensions: 280792
Number of successful extensions: 1336
Number of sequences better than 100.0: 176
Number of HSP's better than 100.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 528
Number of HSP's gapped (non-prelim): 661
length of query: 348
length of database: 14,973,337
effective HSP length: 100
effective length of query: 248
effective length of database: 8,715,537
effective search space: 2161453176
effective search space used: 2161453176
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)