RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4065
(348 letters)
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 100 bits (252), Expect = 1e-25
Identities = 46/169 (27%), Positives = 69/169 (40%), Gaps = 60/169 (35%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 64
+P++C C + F K+ L RH +R H E KP+ C CGK+F++R +LR HQ+
Sbjct: 48 KPYKCPECGKSFSDKKDLTRH-QRTHT------GE-KPYKCPECGKSFSQRANLRAHQRT 99
Query: 65 HARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVCNQGF 124
H E +P+ C C + F
Sbjct: 100 HTGE--------------------------------------------KPYACPECGKSF 115
Query: 125 VRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIH 173
+ HL H +R H KP+ C CGK+F+R ++L HQ+ H
Sbjct: 116 SQLAHLRAH-QRTH-------TGEKPYKCPECGKSFSREDNLHTHQRTH 156
Score = 100 bits (251), Expect = 2e-25
Identities = 49/171 (28%), Positives = 73/171 (42%), Gaps = 60/171 (35%)
Query: 6 PFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIH 65
P+ C C + F R +HL H +R H E KP+ C CGK+F+ ++ L RHQ+ H
Sbjct: 21 PYACPECGKSFSRSDHLAEH-QRTHT------GE-KPYKCPECGKSFSDKKDLTRHQRTH 72
Query: 66 ARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVCNQGFV 125
TG E +P++C C + F
Sbjct: 73 --------------TG-------------------------E-----KPYKCPECGKSFS 88
Query: 126 RKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARE 176
++ +L H +R H E KP++C CGK+F++ HLR HQ+ H E
Sbjct: 89 QRANLRAH-QRTHT------GE-KPYACPECGKSFSQLAHLRAHQRTHTGE 131
Score = 98.7 bits (247), Expect = 8e-25
Identities = 46/169 (27%), Positives = 73/169 (43%), Gaps = 60/169 (35%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 64
+P++C C + F ++ +L H +R H E KP++C CGK+F++ HLR HQ+
Sbjct: 76 KPYKCPECGKSFSQRANLRAH-QRTHT------GE-KPYACPECGKSFSQLAHLRAHQRT 127
Query: 65 HARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVCNQGF 124
H E +P++C C + F
Sbjct: 128 HTGE--------------------------------------------KPYKCPECGKSF 143
Query: 125 VRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIH 173
R+++L H +R H E KP+ C CGK+F+RR+ L HQ+ H
Sbjct: 144 SREDNLHTH-QRTHT------GE-KPYKCPECGKSFSRRDALNVHQRTH 184
Score = 89.8 bits (224), Expect = 1e-21
Identities = 44/161 (27%), Positives = 62/161 (38%), Gaps = 60/161 (37%)
Query: 16 FVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARELLQSSMD 75
V G E KP++C CGK+F+R +HL HQ+ H
Sbjct: 3 EFGSSSSVAQ-AALE-----PG-E-KPYACPECGKSFSRSDHLAEHQRTH---------- 44
Query: 76 MSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRK 135
TG E +P++C C + F K+ L RH +
Sbjct: 45 ----TG--E----------------------------KPYKCPECGKSFSDKKDLTRH-Q 69
Query: 136 RAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARE 176
R H E KP+ C CGK+F++R +LR HQ+ H E
Sbjct: 70 RTHT------GE-KPYKCPECGKSFSQRANLRAHQRTHTGE 103
Score = 66.3 bits (163), Expect = 4e-13
Identities = 25/123 (20%), Positives = 38/123 (30%), Gaps = 52/123 (42%)
Query: 51 TFTRREHLRRHQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGID 110
+ + G E
Sbjct: 2 SEFGSSSSVAQAALE--------------PG-------------------------E--- 19
Query: 111 VVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQ 170
+P+ C C + F R +HL H +R H E KP+ C CGK+F+ ++ L RHQ
Sbjct: 20 --KPYACPECGKSFSRSDHLAEH-QRTHT------GE-KPYKCPECGKSFSDKKDLTRHQ 69
Query: 171 QIH 173
+ H
Sbjct: 70 RTH 72
Score = 34.0 bits (79), Expect = 0.038
Identities = 11/23 (47%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
C C K FSR HL H +R H
Sbjct: 23 ACPECGKSFSRSDHLAEH-QRTH 44
Score = 34.0 bits (79), Expect = 0.038
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
KC C K FS+R++L H +R H
Sbjct: 79 KCPECGKSFSQRANLRAH-QRTH 100
Score = 33.6 bits (78), Expect = 0.043
Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
KC C K FS + L RH +R H
Sbjct: 51 KCPECGKSFSDKKDLTRH-QRTH 72
Score = 33.6 bits (78), Expect = 0.046
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
C C K FS+ +HL H +R H
Sbjct: 107 ACPECGKSFSQLAHLRAH-QRTH 128
Score = 33.6 bits (78), Expect = 0.053
Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
KC C K FSR +L H +R H
Sbjct: 135 KCPECGKSFSREDNLHTH-QRTH 156
Score = 33.2 bits (77), Expect = 0.069
Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
KC C K FSRR L H +R H
Sbjct: 163 KCPECGKSFSRRDALNVH-QRTH 184
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 93.0 bits (232), Expect = 2e-23
Identities = 39/173 (22%), Positives = 61/173 (35%), Gaps = 64/173 (36%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQ-- 62
+C C++ F+ K +L H R H E KPF C CGK + R+E+L H+
Sbjct: 6 SGVECPTCHKKFLSKYYLKVH-NRKHT------GE-KPFECPKCGKCYFRKENLLEHEAR 57
Query: 63 -QIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVCN 121
++ E + F C VC
Sbjct: 58 NCMNRSE--------------------------------------------QVFTCSVCQ 73
Query: 122 QGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQ-IH 173
+ F R+ L H +H E P+ CS C + F +++ L+ H +H
Sbjct: 74 ETFRRRMELRLH-MVSHT------GE-MPYKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 59.1 bits (144), Expect = 3e-11
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 11/67 (16%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQ-- 170
+C C++ F+ K +L H R H E KPF C CGK + R+E+L H+
Sbjct: 6 SGVECPTCHKKFLSKYYLKVH-NRKHT------GE-KPFECPKCGKCYFRKENLLEHEAR 57
Query: 171 -QIHARE 176
++ E
Sbjct: 58 NCMNRSE 64
Score = 35.9 bits (84), Expect = 0.004
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
KC C + F ++ L H+ +LH
Sbjct: 96 KCSSCSQQFMQKKDLQSHMIKLH 118
Score = 33.6 bits (78), Expect = 0.022
Identities = 9/23 (39%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
C VC++ F RR L H H
Sbjct: 68 TCSVCQETFRRRMELRLH-MVSH 89
Score = 32.9 bits (76), Expect = 0.043
Identities = 8/23 (34%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
+C C K F + +L H R H
Sbjct: 9 ECPTCHKKFLSKYYLKVH-NRKH 30
Score = 31.7 bits (73), Expect = 0.11
Identities = 7/25 (28%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLHNI 313
+C C K + R+ +LL H + + +
Sbjct: 37 ECPKCGKCYFRKENLLEH-EARNCM 60
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 89.5 bits (223), Expect = 1e-22
Identities = 37/137 (27%), Positives = 53/137 (38%), Gaps = 51/137 (37%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRW 100
+C +CGK F HL RH+ H +G
Sbjct: 6 SGVACEICGKIFRDVYHLNRHKLSH--------------SG------------------- 32
Query: 101 VACQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTF 160
E +P+ C VC F RK+ + H R+HD G+ KP+ C CGK F
Sbjct: 33 ------E-----KPYSCPVCGLRFKRKDRMSYH-VRSHD-----GSVGKPYICQSCGKGF 75
Query: 161 TRREHLRRH-QQIHARE 176
+R +HL H +Q+H+
Sbjct: 76 SRPDHLNGHIKQVHSGP 92
Score = 73.7 bits (182), Expect = 9e-17
Identities = 34/133 (25%), Positives = 48/133 (36%), Gaps = 50/133 (37%)
Query: 6 PFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIH 65
C++C + F HL RH K +H E KP+SC VCG F R++ + H + H
Sbjct: 7 GVACEICGKIFRDVYHLNRH-KLSHS------GE-KPYSCPVCGLRFKRKDRMSYHVRSH 58
Query: 66 ARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVCNQGFV 125
G V +P+ C C +GF
Sbjct: 59 --------------DG----------------------------SVGKPYICQSCGKGFS 76
Query: 126 RKEHLVRHRKRAH 138
R +HL H K+ H
Sbjct: 77 RPDHLNGHIKQVH 89
Score = 66.0 bits (162), Expect = 5e-14
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 7/65 (10%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRH-QQ 63
+P+ C VC F RK+ + H R+HD G+ KP+ C CGK F+R +HL H +Q
Sbjct: 34 KPYSCPVCGLRFKRKDRMSYH-VRSHD-----GSVGKPYICQSCGKGFSRPDHLNGHIKQ 87
Query: 64 IHARE 68
+H+
Sbjct: 88 VHSGP 92
Score = 40.6 bits (96), Expect = 5e-05
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
C C K FSR HL H+K++H
Sbjct: 67 ICQSCGKGFSRPDHLNGHIKQVH 89
Score = 35.9 bits (84), Expect = 0.003
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
C++C K+F HL RH K H
Sbjct: 9 ACEICGKIFRDVYHLNRH-KLSH 30
Score = 35.2 bits (82), Expect = 0.004
Identities = 8/23 (34%), Positives = 10/23 (43%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
C VC F R+ + H R H
Sbjct: 37 SCPVCGLRFKRKDRMSYH-VRSH 58
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 88.0 bits (219), Expect = 1e-21
Identities = 53/175 (30%), Positives = 67/175 (38%), Gaps = 66/175 (37%)
Query: 5 RPFQCD--VCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV--CGKTFTRREHLRR 60
RPF C CN+ + + HL H R H G E KP+ C C + F+R + L+R
Sbjct: 5 RPFMCAYPGCNKRYFKLSHLQMH-SRKH-----TG-E-KPYQCDFKDCERRFSRSDQLKR 56
Query: 61 HQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVC 120
HQ+ H TG V+PFQC C
Sbjct: 57 HQRRH--------------TG------------------------------VKPFQCKTC 72
Query: 121 NQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV--CGKTFTRREHLRRHQQIH 173
+ F R +HL H R H E KPFSC C K F R + L RH +H
Sbjct: 73 QRKFSRSDHLKTH-TRTHT------GE-KPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 33.6 bits (78), Expect = 0.023
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
+C C++ FSR HL H R H
Sbjct: 68 QCKTCQRKFSRSDHLKTH-TRTH 89
Score = 30.2 bits (69), Expect = 0.35
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 3/25 (12%)
Query: 289 KCDV--CKKVFSRRSHLLRHLKRLH 311
+CD C++ FSR L RH +R H
Sbjct: 38 QCDFKDCERRFSRSDQLKRH-QRRH 61
Score = 29.0 bits (66), Expect = 0.85
Identities = 9/25 (36%), Positives = 11/25 (44%), Gaps = 3/25 (12%)
Query: 289 KCD--VCKKVFSRRSHLLRHLKRLH 311
C C K + + SHL H R H
Sbjct: 8 MCAYPGCNKRYFKLSHLQMH-SRKH 31
Score = 28.6 bits (65), Expect = 1.1
Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 3/25 (12%)
Query: 289 KCDV--CKKVFSRRSHLLRHLKRLH 311
C C+K F+R L+RH +H
Sbjct: 96 SCRWPSCQKKFARSDELVRH-HNMH 119
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 84.8 bits (211), Expect = 9e-21
Identities = 35/156 (22%), Positives = 52/156 (33%), Gaps = 60/156 (38%)
Query: 21 HLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALT 80
+ K F C CG+ FT+ +L H++ H T
Sbjct: 4 GSSGG-RLPS-------KTKKEFICKFCGRHFTKSYNLLIHERTH--------------T 41
Query: 81 GLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDL 140
E RP+ CD+C++ F R++HL H + H
Sbjct: 42 D-------------------------E-----RPYTCDICHKAFRRQDHLRDH-RYIHS- 69
Query: 141 DPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARE 176
E KPF C CGK F + L H+ +H +
Sbjct: 70 -----KE-KPFKCQECGKGFCQSRTLAVHKTLHMQT 99
Score = 66.3 bits (163), Expect = 6e-14
Identities = 32/150 (21%), Positives = 54/150 (36%), Gaps = 60/150 (40%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 64
+ F C C + F + +L+ H +R H E +P++C +C K F R++HLR H+ I
Sbjct: 16 KEFICKFCGRHFTKSYNLLIH-ERTHT------DE-RPYTCDICHKAFRRQDHLRDHRYI 67
Query: 65 HARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVCNQGF 124
H++E +PF+C C +GF
Sbjct: 68 HSKE--------------------------------------------KPFKCQECGKGF 83
Query: 125 VRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 154
+ L H K H + + +
Sbjct: 84 CQSRTLAVH-KTLH-------MQTSSPTAA 105
Score = 36.3 bits (85), Expect = 0.002
Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
CD+C K F R+ HL H + +H
Sbjct: 47 TCDICHKAFRRQDHLRDH-RYIH 68
Score = 35.5 bits (83), Expect = 0.004
Identities = 8/23 (34%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
C C + F++ +LL H +R H
Sbjct: 19 ICKFCGRHFTKSYNLLIH-ERTH 40
Score = 35.1 bits (82), Expect = 0.006
Identities = 10/23 (43%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
KC C K F + L H K LH
Sbjct: 75 KCQECGKGFCQSRTLAVH-KTLH 96
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 83.7 bits (208), Expect = 4e-20
Identities = 39/178 (21%), Positives = 55/178 (30%), Gaps = 67/178 (37%)
Query: 5 RPFQCDV--CNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQ 62
R C C + F + +H H + C+ CGK F L+RHQ
Sbjct: 4 RTIACPHKGCTKMFRDNSAMRKH-LHTH-------GP-RVHVCAECGKAFVESSKLKRHQ 54
Query: 63 QIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDV--C 120
+H TG E +PFQC C
Sbjct: 55 LVH--------------TG--E----------------------------KPFQCTFEGC 70
Query: 121 NQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV--CGKTFTRREHLRRHQQIHARE 176
+ F +L H R H D +P+ C C K F + +L+ H HA+
Sbjct: 71 GKRFSLDFNLRTH-VRIHTGD-------RPYVCPFDGCNKKFAQSTNLKSHILTHAKA 120
Score = 31.7 bits (73), Expect = 0.11
Identities = 9/23 (39%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
C C K F S L RH + +H
Sbjct: 36 VCAECGKAFVESSKLKRH-QLVH 57
Score = 29.0 bits (66), Expect = 0.84
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 4/29 (13%)
Query: 285 KPIPKCDV--CKKVFSRRSHLLRHLKRLH 311
+ I C C K+F S + +H H
Sbjct: 4 RTI-ACPHKGCTKMFRDNSAMRKH-LHTH 30
Score = 27.5 bits (62), Expect = 3.0
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 3/25 (12%)
Query: 289 KCDV--CKKVFSRRSHLLRHLKRLH 311
+C C K FS +L H R+H
Sbjct: 64 QCTFEGCGKRFSLDFNLRTH-VRIH 87
Score = 27.1 bits (61), Expect = 4.2
Identities = 7/25 (28%), Positives = 11/25 (44%), Gaps = 3/25 (12%)
Query: 289 KCDV--CKKVFSRRSHLLRHLKRLH 311
C C K F++ ++L H H
Sbjct: 94 VCPFDGCNKKFAQSTNLKSH-ILTH 117
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 82.9 bits (206), Expect = 4e-20
Identities = 28/136 (20%), Positives = 44/136 (32%), Gaps = 52/136 (38%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRW 100
P C VCGK F+R++ L+ H + H TG
Sbjct: 7 GPHKCEVCGKCFSRKDKLKTHMRCH--------------TG------------------- 33
Query: 101 VACQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTF 160
V+P++C C+ L +H R H ++ +PF C +C
Sbjct: 34 -----------VKPYKCKTCDYAAADSSSLNKH-LRIH-------SDERPFKCQICPYAS 74
Query: 161 TRREHLRRHQQIHARE 176
L H + H +
Sbjct: 75 RNSSQLTVHLRSHTGD 90
Score = 64.4 bits (158), Expect = 2e-13
Identities = 29/134 (21%), Positives = 40/134 (29%), Gaps = 53/134 (39%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 64
P +C+VC + F RK+ L H R H KP+ C C L +H +I
Sbjct: 7 GPHKCEVCGKCFSRKDKLKTH-MRCHT------GV-KPYKCKTCDYAAADSSSLNKHLRI 58
Query: 65 HARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVCNQGF 124
H + E RPF+C +C
Sbjct: 59 H--------------SD--E----------------------------RPFKCQICPYAS 74
Query: 125 VRKEHLVRHRKRAH 138
L H R+H
Sbjct: 75 RNSSQLTVH-LRSH 87
Score = 59.4 bits (145), Expect = 1e-11
Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 8/64 (12%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 64
+P++C C+ L +H R H ++ +PF C +C L H +
Sbjct: 35 KPYKCKTCDYAAADSSSLNKH-LRIH-------SDERPFKCQICPYASRNSSQLTVHLRS 86
Query: 65 HARE 68
H +
Sbjct: 87 HTGD 90
Score = 36.6 bits (86), Expect = 0.001
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
KC+VC K FSR+ L H R H
Sbjct: 10 KCEVCGKCFSRKDKLKTH-MRCH 31
Score = 35.9 bits (84), Expect = 0.002
Identities = 8/23 (34%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
KC C + S L +H R+H
Sbjct: 38 KCKTCDYAAADSSSLNKH-LRIH 59
Score = 35.1 bits (82), Expect = 0.005
Identities = 8/23 (34%), Positives = 9/23 (39%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
KC +C S L H R H
Sbjct: 66 KCQICPYASRNSSQLTVH-LRSH 87
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 81.8 bits (203), Expect = 8e-20
Identities = 27/135 (20%), Positives = 40/135 (29%), Gaps = 54/135 (40%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRW 100
KPF C +C + F+R +HL H + H TG
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTH--------------TG------------------- 28
Query: 101 VACQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTF 160
E +PF CD+C + F R + RHR P +
Sbjct: 29 ------E-----KPFACDICGRKFARSDERKRHR-DIQ-------HI-LPILEDKVEELL 68
Query: 161 TRREHLRRHQQIHAR 175
++ HL +
Sbjct: 69 SKNYHLENEVA-RLK 82
Score = 69.8 bits (172), Expect = 2e-15
Identities = 29/137 (21%), Positives = 43/137 (31%), Gaps = 55/137 (40%)
Query: 4 VRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQ 63
++PFQC +C + F R +HL H R H G E KPF+C +CG+ F R + +RH+
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTH-IRTH-----TG-E-KPFACDICGRKFARSDERKRHRD 52
Query: 64 IHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVCNQG 123
I P D +
Sbjct: 53 IQ--------------HI-------------------------------LPILEDKVEEL 67
Query: 124 FVRKEHLVRHRK--RAH 138
+ HL +
Sbjct: 68 LSKNYHLENEVARLKKL 84
Score = 67.1 bits (165), Expect = 2e-14
Identities = 25/62 (40%), Positives = 36/62 (58%), Gaps = 8/62 (12%)
Query: 112 VRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQ 171
++PFQC +C + F R +HL H R H G E KPF+C +CG+ F R + +RH+
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTH-IRTH-----TG-E-KPFACDICGRKFARSDERKRHRD 52
Query: 172 IH 173
I
Sbjct: 53 IQ 54
Score = 36.3 bits (85), Expect = 0.001
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLHNIDP 315
CD+C + F+R RH + + +I P
Sbjct: 33 ACDICGRKFARSDERKRH-RDIQHILP 58
Score = 35.9 bits (84), Expect = 0.002
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
+C +C + FSR HL H R H
Sbjct: 5 QCRICMRNFSRSDHLTTH-IRTH 26
Score = 34.0 bits (79), Expect = 0.010
Identities = 6/29 (20%), Positives = 12/29 (41%), Gaps = 3/29 (10%)
Query: 285 KPIPKCDVCKKVFSRRSHLLRHLK--RLH 311
PI D +++ S+ HL + +
Sbjct: 57 LPI-LEDKVEELLSKNYHLENEVARLKKL 84
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 81.4 bits (202), Expect = 1e-19
Identities = 38/138 (27%), Positives = 57/138 (41%), Gaps = 54/138 (39%)
Query: 41 KPFSCSV--CGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVR 98
+P++C V C + F++ L RH +IH TG
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIH--------------TG----------------- 31
Query: 99 RWVACQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGK 158
+ +PFQC +C + F R +HL H R H E KPF+C +CG+
Sbjct: 32 --------Q-----KPFQCRICMRNFSRSDHLTTH-IRTHT------GE-KPFACDICGR 70
Query: 159 TFTRREHLRRHQQIHARE 176
F R + +RH +IH R+
Sbjct: 71 KFARSDERKRHTKIHLRQ 88
Score = 64.0 bits (157), Expect = 2e-13
Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 8/64 (12%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 64
+PFQC +C + F R +HL H R H E KPF+C +CG+ F R + +RH +I
Sbjct: 33 KPFQCRICMRNFSRSDHLTTH-IRTHT------GE-KPFACDICGRKFARSDERKRHTKI 84
Query: 65 HARE 68
H R+
Sbjct: 85 HLRQ 88
Score = 34.4 bits (80), Expect = 0.008
Identities = 8/23 (34%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
CD+C + F+R RH ++H
Sbjct: 64 ACDICGRKFARSDERKRH-TKIH 85
Score = 34.0 bits (79), Expect = 0.012
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
+C +C + FSR HL H R H
Sbjct: 36 QCRICMRNFSRSDHLTTH-IRTH 57
Score = 29.4 bits (67), Expect = 0.49
Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 3/25 (12%)
Query: 289 KCDV--CKKVFSRRSHLLRHLKRLH 311
C V C + FS+ L RH R+H
Sbjct: 6 ACPVESCDRRFSQSGSLTRH-IRIH 29
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 84.2 bits (209), Expect = 1e-19
Identities = 40/177 (22%), Positives = 53/177 (29%), Gaps = 66/177 (37%)
Query: 5 RPFQCDV--CNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS--VCGKTFTRREHLRR 60
+ + C C + + L H H G KPF C C K FT HL R
Sbjct: 11 KRYICSFADCGAAYNKNWKLQAH-LCKH-----TGE--KPFPCKEEGCEKGFTSLHHLTR 62
Query: 61 HQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCD-- 118
H H TG E + F CD
Sbjct: 63 HSLTH--------------TG--E----------------------------KNFTCDSD 78
Query: 119 VCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV--CGKTFTRREHLRRHQQIH 173
C+ F K ++ +H R H + + C CGK F + L+ HQ H
Sbjct: 79 GCDLRFTTKANMKKHFNRFH------NIKICVYVCHFENCGKAFKKHNQLKVHQFSH 129
Score = 80.7 bits (200), Expect = 3e-18
Identities = 34/177 (19%), Positives = 56/177 (31%), Gaps = 66/177 (37%)
Query: 5 RPFQCD--VCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS--VCGKTFTRREHLRR 60
+PF C C +GF HL RH H E K F+C C FT + ++++
Sbjct: 41 KPFPCKEEGCEKGFTSLHHLTRH-SLTHT------GE-KNFTCDSDGCDLRFTTKANMKK 92
Query: 61 HQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDV- 119
H + + + C
Sbjct: 93 HFNRF--------------HN--IK--------------------------ICVYVCHFE 110
Query: 120 -CNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS--VCGKTFTRREHLRRHQQIH 173
C + F + L H + +H + P+ C C K F+ L+RH+++H
Sbjct: 111 NCGKAFKKHNQLKVH-QFSH-------TQQLPYECPHEGCDKRFSLPSRLKRHEKVH 159
Score = 79.9 bits (198), Expect = 5e-18
Identities = 38/174 (21%), Positives = 59/174 (33%), Gaps = 63/174 (36%)
Query: 6 PFQCD--VCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV--CGKTFTRREHLRRH 61
F CD C+ F K ++ +H R H + + C CGK F + L+ H
Sbjct: 72 NFTCDSDGCDLRFTTKANMKKHFNRFH------NIKICVYVCHFENCGKAFKKHNQLKVH 125
Query: 62 QQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQC--DV 119
Q H T + P++C +
Sbjct: 126 QFSH--------------TQ-------------------------Q-----LPYECPHEG 141
Query: 120 CNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIH 173
C++ F L RH ++ H P + K SCS GKT+T +L+ + H
Sbjct: 142 CDKRFSLPSRLKRH-EKVHAGYPCK----KDDSCSFVGKTWT--LYLKHVAECH 188
Score = 73.8 bits (182), Expect = 7e-16
Identities = 30/142 (21%), Positives = 42/142 (29%), Gaps = 58/142 (40%)
Query: 41 KPFSCSV--CGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVR 98
K + CS CG + + L+ H H TG
Sbjct: 11 KRYICSFADCGAAYNKNWKLQAHLCKH--------------TG----------------- 39
Query: 99 RWVACQRIEGIDVVRPFQCD--VCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS-- 154
E +PF C C +GF HL RH H E K F+C
Sbjct: 40 --------E-----KPFPCKEEGCEKGFTSLHHLTRH-SLTHT------GE-KNFTCDSD 78
Query: 155 VCGKTFTRREHLRRHQQIHARE 176
C FT + ++++H
Sbjct: 79 GCDLRFTTKANMKKHFNRFHNI 100
Score = 51.4 bits (124), Expect = 5e-08
Identities = 20/138 (14%), Positives = 36/138 (26%), Gaps = 56/138 (40%)
Query: 5 RPFQCDV--CNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS--VCGKTFTRREHLRR 60
+ C C + F + L H + +H + P+ C C K F+ L+R
Sbjct: 103 CVYVCHFENCGKAFKKHNQLKVH-QFSH-------TQQLPYECPHEGCDKRFSLPSRLKR 154
Query: 61 HQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVC 120
H+++H G + D C
Sbjct: 155 HEKVH--------------AG------------------------------YPCKKDDSC 170
Query: 121 NQGFVRKEHLVRHRKRAH 138
+ ++H H
Sbjct: 171 SFVGKTWTLYLKHVAECH 188
Score = 34.5 bits (80), Expect = 0.023
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLHN 312
K D C V + L+H+ H
Sbjct: 166 KDDSCSFVGKTWTLYLKHVAECHQ 189
Score = 31.8 bits (73), Expect = 0.21
Identities = 9/25 (36%), Positives = 11/25 (44%), Gaps = 3/25 (12%)
Query: 289 KCD--VCKKVFSRRSHLLRHLKRLH 311
C C+K F+ HL RH H
Sbjct: 44 PCKEEGCEKGFTSLHHLTRH-SLTH 67
Score = 31.8 bits (73), Expect = 0.22
Identities = 8/30 (26%), Positives = 11/30 (36%), Gaps = 4/30 (13%)
Query: 285 KPIP-KCDV--CKKVFSRRSHLLRHLKRLH 311
K C C K F + + L H + H
Sbjct: 101 KICVYVCHFENCGKAFKKHNQLKVH-QFSH 129
Score = 31.0 bits (71), Expect = 0.34
Identities = 5/25 (20%), Positives = 8/25 (32%), Gaps = 3/25 (12%)
Query: 289 KCDV--CKKVFSRRSHLLRHLKRLH 311
C C +++ L H H
Sbjct: 14 ICSFADCGAAYNKNWKLQAH-LCKH 37
Score = 30.6 bits (70), Expect = 0.46
Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 3/25 (12%)
Query: 289 KC--DVCKKVFSRRSHLLRHLKRLH 311
+C + C K FS S L RH +++H
Sbjct: 136 ECPHEGCDKRFSLPSRLKRH-EKVH 159
Score = 29.9 bits (68), Expect = 0.90
Identities = 5/25 (20%), Positives = 11/25 (44%), Gaps = 3/25 (12%)
Query: 289 KCD--VCKKVFSRRSHLLRHLKRLH 311
CD C F+ ++++ +H
Sbjct: 74 TCDSDGCDLRFTTKANMKKH-FNRF 97
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 83.1 bits (206), Expect = 2e-19
Identities = 37/175 (21%), Positives = 51/175 (29%), Gaps = 59/175 (33%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEA--KPFSCSVCGKTFTRREHLRRHQ 62
C++ F LV H + PE C GK+F + L H
Sbjct: 24 LSRPKKSCDRTFSTMHELVTH-VTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHI 82
Query: 63 QIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDV--C 120
++H TG +PF C C
Sbjct: 83 RVH--------------TG------------------------------EKPFPCPFPGC 98
Query: 121 NQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV--CGKTFTRREHLRRHQQIH 173
+ F R E+L H KR H E KPF C C + F ++H +H
Sbjct: 99 GKIFARSENLKIH-KRTHT------GE-KPFKCEFEGCDRRFANSSDRKKHMHVH 145
Score = 60.0 bits (146), Expect = 3e-11
Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 5/75 (6%)
Query: 101 VACQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEA--KPFSCSVCGK 158
++C+ I+ C++ F LV H + PE C GK
Sbjct: 14 LSCKWIDEAQ--LSRPKKSCDRTFSTMHELVTH-VTMEHVGGPEQNNHVCYWEECPREGK 70
Query: 159 TFTRREHLRRHQQIH 173
+F + L H ++H
Sbjct: 71 SFKAKYKLVNHIRVH 85
Score = 33.4 bits (77), Expect = 0.041
Identities = 6/28 (21%), Positives = 11/28 (39%), Gaps = 1/28 (3%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLHNIDPP 316
C + FS L+ H + ++ P
Sbjct: 27 PKKSCDRTFSTMHELVTH-VTMEHVGGP 53
Score = 30.7 bits (70), Expect = 0.31
Identities = 7/23 (30%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
+C K F + L+ H R+H
Sbjct: 64 ECPREGKSFKAKYKLVNH-IRVH 85
Score = 30.7 bits (70), Expect = 0.32
Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 3/25 (12%)
Query: 289 KCDV--CKKVFSRRSHLLRHLKRLH 311
C C K+F+R +L H KR H
Sbjct: 92 PCPFPGCGKIFARSENLKIH-KRTH 115
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 78.3 bits (194), Expect = 2e-18
Identities = 32/135 (23%), Positives = 45/135 (33%), Gaps = 54/135 (40%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRW 100
+ CGKT+T+ HL+ H + H E
Sbjct: 6 HTCDYAGCGKTYTKSSHLKAHLRTHTGE-------------------------------- 33
Query: 101 VACQRIEGIDVVRPFQCDV--CNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGK 158
+P+ CD C F R + L RH R H G +PF C C +
Sbjct: 34 ------------KPYHCDWDGCGWKFARSDELTRH-YRKHT-----GH--RPFQCQKCDR 73
Query: 159 TFTRREHLRRHQQIH 173
F+R +HL H + H
Sbjct: 74 AFSRSDHLALHMKRH 88
Score = 64.5 bits (158), Expect = 1e-13
Identities = 32/134 (23%), Positives = 42/134 (31%), Gaps = 54/134 (40%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV--CGKTFTRREHLRRHQ 62
C + + + HL H R H + KP+ C CG F R + L RH
Sbjct: 6 HTCDYAGCGKTYTKSSHLKAH-LRTHTGE-------KPYHCDWDGCGWKFARSDELTRHY 57
Query: 63 QIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVCNQ 122
+ H TG RPFQC C++
Sbjct: 58 RKH--------------TG------------------------------HRPFQCQKCDR 73
Query: 123 GFVRKEHLVRHRKR 136
F R +HL H KR
Sbjct: 74 AFSRSDHLALHMKR 87
Score = 62.5 bits (153), Expect = 8e-13
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 10/63 (15%)
Query: 5 RPFQCDV--CNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQ 62
+P+ CD C F R + L RH R H G +PF C C + F+R +HL H
Sbjct: 34 KPYHCDWDGCGWKFARSDELTRH-YRKHT-----GH--RPFQCQKCDRAFSRSDHLALHM 85
Query: 63 QIH 65
+ H
Sbjct: 86 KRH 88
Score = 51.8 bits (125), Expect = 6e-09
Identities = 17/66 (25%), Positives = 24/66 (36%), Gaps = 10/66 (15%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV--CGKTFTRREHLRRHQ 170
C + + + HL H R H + KP+ C CG F R + L RH
Sbjct: 6 HTCDYAGCGKTYTKSSHLKAH-LRTHTGE-------KPYHCDWDGCGWKFARSDELTRHY 57
Query: 171 QIHARE 176
+ H
Sbjct: 58 RKHTGH 63
Score = 36.7 bits (86), Expect = 0.001
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 4 VRPFQCDVCNQGFVRKEHLVRHRKR 28
RPFQC C++ F R +HL H KR
Sbjct: 63 HRPFQCQKCDRAFSRSDHLALHMKR 87
Score = 34.8 bits (81), Expect = 0.005
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 289 KCDVCKKVFSRRSHLLRHLKR 309
+C C + FSR HL H+KR
Sbjct: 67 QCQKCDRAFSRSDHLALHMKR 87
Score = 30.6 bits (70), Expect = 0.15
Identities = 9/23 (39%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
C K +++ SHL HL R H
Sbjct: 9 DYAGCGKTYTKSSHLKAHL-RTH 30
Score = 28.3 bits (64), Expect = 1.1
Identities = 10/25 (40%), Positives = 11/25 (44%), Gaps = 3/25 (12%)
Query: 289 KCDV--CKKVFSRRSHLLRHLKRLH 311
CD C F+R L RH R H
Sbjct: 37 HCDWDGCGWKFARSDELTRH-YRKH 60
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 76.7 bits (190), Expect = 5e-18
Identities = 31/131 (23%), Positives = 43/131 (32%), Gaps = 52/131 (39%)
Query: 43 FSCSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVA 102
F C +CGK+F R L H IH +
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIH--------------SD--------------------- 26
Query: 103 CQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTR 162
RP+ C C + F +K + +H H E KP C VCGK F++
Sbjct: 27 ----T-----RPYPCQYCGKRFHQKSDMKKH-TFIHT------GE-KPHKCQVCGKAFSQ 69
Query: 163 REHLRRHQQIH 173
+L H + H
Sbjct: 70 SSNLITHSRKH 80
Score = 60.5 bits (148), Expect = 4e-12
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 8/61 (13%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 64
RP+ C C + F +K + +H H E KP C VCGK F++ +L H +
Sbjct: 28 RPYPCQYCGKRFHQKSDMKKH-TFIHT------GE-KPHKCQVCGKAFSQSSNLITHSRK 79
Query: 65 H 65
H
Sbjct: 80 H 80
Score = 60.1 bits (147), Expect = 4e-12
Identities = 29/132 (21%), Positives = 44/132 (33%), Gaps = 53/132 (40%)
Query: 7 FQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHA 66
F C +C + F R L H H +P+ C CGK F ++ +++H IH
Sbjct: 2 FDCKICGKSFKRSSTLSTH-LLIHS------DT-RPYPCQYCGKRFHQKSDMKKHTFIH- 52
Query: 67 RELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVCNQGFVR 126
TG E +P +C VC + F +
Sbjct: 53 -------------TG--E----------------------------KPHKCQVCGKAFSQ 69
Query: 127 KEHLVRHRKRAH 138
+L+ H R H
Sbjct: 70 SSNLITH-SRKH 80
Score = 35.5 bits (83), Expect = 0.002
Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
KC VC K FS+ S+L+ H R H
Sbjct: 59 KCQVCGKAFSQSSNLITH-SRKH 80
Score = 35.5 bits (83), Expect = 0.003
Identities = 7/23 (30%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
C C K F ++S + +H +H
Sbjct: 31 PCQYCGKRFHQKSDMKKH-TFIH 52
Score = 35.1 bits (82), Expect = 0.003
Identities = 9/23 (39%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
C +C K F R S L H +H
Sbjct: 3 DCKICGKSFKRSSTLSTH-LLIH 24
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 75.6 bits (187), Expect = 3e-17
Identities = 32/136 (23%), Positives = 46/136 (33%), Gaps = 55/136 (40%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRW 100
K + C CGK+FT + RH +H GL
Sbjct: 9 KLYPCQ-CGKSFTHKSQRDRHMSMH--------------LGL------------------ 35
Query: 101 VACQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTF 160
RP+ C VC + F K HLV H + H KP+ C++C K F
Sbjct: 36 ------------RPYGCGVCGKKFKMKHHLVGH-MKIHT------GI-KPYECNICAKRF 75
Query: 161 TRREHLRRHQQIHARE 176
R+ H+ + +
Sbjct: 76 MWRDSF--HRHVTSCT 89
Score = 75.2 bits (186), Expect = 4e-17
Identities = 27/163 (16%), Positives = 46/163 (28%), Gaps = 63/163 (38%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 64
+ + C C + F K RH H +P+ C VCGK F + HL H +I
Sbjct: 9 KLYPCQ-CGKSFTHKSQRDRH-MSMHL------GL-RPYGCGVCGKKFKMKHHLVGHMKI 59
Query: 65 HARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVCNQGF 124
H +P++C++C + F
Sbjct: 60 HTGI--------------------------------------------KPYECNICAKRF 75
Query: 125 VRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLR 167
+ ++ HR K + + + T
Sbjct: 76 MWRDSF--HR-HVTS------CT-KSYEAAKAEQNTTEASGPS 108
Score = 34.7 bits (81), Expect = 0.007
Identities = 9/23 (39%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
C VC K F + HL+ H ++H
Sbjct: 39 GCGVCGKKFKMKHHLVGH-MKIH 60
Score = 30.9 bits (71), Expect = 0.16
Identities = 8/23 (34%), Positives = 11/23 (47%), Gaps = 2/23 (8%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
C C K F+ +S RH +H
Sbjct: 12 PCQ-CGKSFTHKSQRDRH-MSMH 32
Score = 28.6 bits (65), Expect = 1.1
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 289 KCDVCKKVFSRRSHLLRH 306
+C++C K F R RH
Sbjct: 67 ECNICAKRFMWRDSFHRH 84
Score = 26.3 bits (59), Expect = 6.9
Identities = 1/15 (6%), Positives = 5/15 (33%)
Query: 289 KCDVCKKVFSRRSHL 303
+ ++ + S
Sbjct: 93 EAAKAEQNTTEASGP 107
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 76.9 bits (190), Expect = 3e-17
Identities = 38/180 (21%), Positives = 61/180 (33%), Gaps = 70/180 (38%)
Query: 5 RPFQCDVCN-----QGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV--CGKTFTRREH 57
+ F C + F + LV H R H E KP C+ C K+++R E+
Sbjct: 33 KEFVCHWGGCSRELRPFKAQYMLVVH-MRRHT------GE-KPHKCTFEGCRKSYSRLEN 84
Query: 58 LRRHQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQC 117
L+ H + H TG E +P+ C
Sbjct: 85 LKTHLRSH--------------TG-------------------------E-----KPYMC 100
Query: 118 --DVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV--CGKTFTRREHLRRHQQIH 173
+ C++ F +H+ R H + KP+ C + C K +T LR+H +
Sbjct: 101 EHEGCSKAFSNASDRAKHQNRTHSNE-------KPYVCKLPGCTKRYTDPSSLRKHVKTV 153
Score = 73.0 bits (180), Expect = 7e-16
Identities = 40/179 (22%), Positives = 55/179 (30%), Gaps = 67/179 (37%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCG-----KTFTRREHLR 59
+ D C+Q F +E LV H H E K F C G + F + L
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHINSEH-----IHGERKEFVCHWGGCSRELRPFKAQYMLV 56
Query: 60 RHQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDV 119
H + H TG E +P +C
Sbjct: 57 VHMRRH--------------TG--E----------------------------KPHKCTF 72
Query: 120 --CNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSC--SVCGKTFTRREHLRRHQQ-IH 173
C + + R E+L H R+H E KP+ C C K F+ +HQ H
Sbjct: 73 EGCRKSYSRLENLKTH-LRSHT------GE-KPYMCEHEGCSKAFSNASDRAKHQNRTH 123
Score = 36.8 bits (86), Expect = 0.003
Identities = 7/31 (22%), Positives = 10/31 (32%), Gaps = 3/31 (9%)
Query: 149 KPFSCSVCGKTFTRREHLRRH---QQIHARE 176
C + F +E L H + IH
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHINSEHIHGER 32
Score = 31.8 bits (73), Expect = 0.13
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
+ D C + F + L+ H+ H
Sbjct: 5 RWDGCSQEFDSQEQLVHHINSEH 27
Score = 30.3 bits (69), Expect = 0.53
Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 3/25 (12%)
Query: 289 KCDV--CKKVFSRRSHLLRHLKRLH 311
KC C+K +SR +L H R H
Sbjct: 69 KCTFEGCRKSYSRLENLKTH-LRSH 92
Score = 29.9 bits (68), Expect = 0.74
Identities = 9/25 (36%), Positives = 11/25 (44%), Gaps = 2/25 (8%)
Query: 289 KC--DVCKKVFSRRSHLLRHLKRLH 311
C + C K FS S +H R H
Sbjct: 99 MCEHEGCSKAFSNASDRAKHQNRTH 123
Score = 29.5 bits (67), Expect = 0.95
Identities = 6/22 (27%), Positives = 9/22 (40%), Gaps = 1/22 (4%)
Query: 290 CDVCKKVFSRRSHLLRHLKRLH 311
C + F + L+ H R H
Sbjct: 42 CSRELRPFKAQYMLVVH-MRRH 62
Score = 26.8 bits (60), Expect = 8.3
Identities = 6/25 (24%), Positives = 11/25 (44%), Gaps = 3/25 (12%)
Query: 289 KCDV--CKKVFSRRSHLLRHLKRLH 311
C + C K ++ S L +H +
Sbjct: 130 VCKLPGCTKRYTDPSSLRKH-VKTV 153
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex,
double helix, transcription/DNA complex; HET: DNA;
2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 73.7 bits (182), Expect = 5e-17
Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 64
++C VC++ + + RH +H K + C C K FTR++++ H +I
Sbjct: 9 HTYRCKVCSRVYTHISNFCRHYVTSH------KRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Query: 65 HAR 67
+
Sbjct: 63 IHK 65
Score = 73.7 bits (182), Expect = 5e-17
Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 172
++C VC++ + + RH +H K + C C K FTR++++ H +I
Sbjct: 9 HTYRCKVCSRVYTHISNFCRHYVTSH------KRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Query: 173 HAR 175
+
Sbjct: 63 IHK 65
Score = 59.9 bits (146), Expect = 4e-12
Identities = 15/100 (15%), Positives = 27/100 (27%), Gaps = 42/100 (42%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRW 100
+ C VC + +T + RH +
Sbjct: 9 HTYRCKVCSRVYTHISNFCRHYVTSHK------------RN------------------- 37
Query: 101 VACQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDL 140
V+ + C C + F RK+++ H K H +
Sbjct: 38 -----------VKVYPCPFCFKEFTRKDNMTAHVKIIHKI 66
Score = 37.5 bits (88), Expect = 3e-04
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLHNI 313
C C K F+R+ ++ H+K +H I
Sbjct: 42 PCPFCFKEFTRKDNMTAHVKIIHKI 66
Score = 37.1 bits (87), Expect = 5e-04
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 4 VRPFQCDVCNQGFVRKEHLVRHRKRAHDL 32
V+ + C C + F RK+++ H K H +
Sbjct: 38 VKVYPCPFCFKEFTRKDNMTAHVKIIHKI 66
Score = 35.2 bits (82), Expect = 0.002
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
+C VC +V++ S+ RH H
Sbjct: 12 RCKVCSRVYTHISNFCRHYVTSH 34
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 72.5 bits (179), Expect = 1e-16
Identities = 30/68 (44%), Positives = 40/68 (58%), Gaps = 9/68 (13%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQ- 63
R F C+VC + F R+EHL RH R+H E KP+ C +C + FTRR+ L RH Q
Sbjct: 1 RSFVCEVCTRAFARQEHLKRH-YRSHT------NE-KPYPCGLCNRAFTRRDLLIRHAQK 52
Query: 64 IHARELLQ 71
IH+ L +
Sbjct: 53 IHSGNLGE 60
Score = 72.5 bits (179), Expect = 1e-16
Identities = 30/68 (44%), Positives = 40/68 (58%), Gaps = 9/68 (13%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQ- 171
R F C+VC + F R+EHL RH R+H E KP+ C +C + FTRR+ L RH Q
Sbjct: 1 RSFVCEVCTRAFARQEHLKRH-YRSHT------NE-KPYPCGLCNRAFTRRDLLIRHAQK 52
Query: 172 IHARELLQ 179
IH+ L +
Sbjct: 53 IHSGNLGE 60
Score = 66.4 bits (163), Expect = 2e-14
Identities = 23/98 (23%), Positives = 37/98 (37%), Gaps = 44/98 (44%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRW 100
+ F C VC + F R+EHL+RH + H E
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNE-------------------------------- 28
Query: 101 VACQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRKRAH 138
+P+ C +CN+ F R++ L+RH ++ H
Sbjct: 29 ------------KPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 44.4 bits (106), Expect = 1e-06
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
C +C + F+RR L+RH +++H
Sbjct: 32 PCGLCNRAFTRRDLLIRHAQKIH 54
Score = 39.0 bits (92), Expect = 9e-05
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
C+VC + F+R+ HL RH R H
Sbjct: 4 VCEVCTRAFARQEHLKRH-YRSH 25
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 72.1 bits (177), Expect = 3e-16
Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 5/74 (6%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 64
QC++C +K L H+ R H F C CGK F + + + H+
Sbjct: 6 SGLQCEICGFTCRQKASLNWHQ-RKHAETVAA----LRFPCEFCGKRFEKPDSVAAHRSK 60
Query: 65 HARELLQSSMDMSA 78
LL + + S
Sbjct: 61 SHPALLLAPQESSG 74
Score = 72.1 bits (177), Expect = 3e-16
Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 5/74 (6%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 172
QC++C +K L H+ R H F C CGK F + + + H+
Sbjct: 6 SGLQCEICGFTCRQKASLNWHQ-RKHAETVAA----LRFPCEFCGKRFEKPDSVAAHRSK 60
Query: 173 HARELLQSSMDMSA 186
LL + + S
Sbjct: 61 SHPALLLAPQESSG 74
Score = 33.9 bits (78), Expect = 0.008
Identities = 6/32 (18%), Positives = 10/32 (31%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLHNIDPPPSSR 320
C+ C K F + + H + H
Sbjct: 40 PCEFCGKRFEKPDSVAAHRSKSHPALLLAPQE 71
Score = 31.2 bits (71), Expect = 0.088
Identities = 6/23 (26%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
+C++C +++ L H +R H
Sbjct: 9 QCEICGFTCRQKASLNWH-QRKH 30
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 86
Score = 71.8 bits (177), Expect = 3e-16
Identities = 25/64 (39%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 64
+P+ C C++ F +K+ L H KR HD F CS CGKTFTRR + RH
Sbjct: 14 KPYACSHCDKTFRQKQLLDMHFKRYHD----PNFVPAAFVCSKCGKTFTRRNTMARHADN 69
Query: 65 HARE 68
A
Sbjct: 70 CAGP 73
Score = 71.8 bits (177), Expect = 3e-16
Identities = 25/64 (39%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 172
+P+ C C++ F +K+ L H KR HD F CS CGKTFTRR + RH
Sbjct: 14 KPYACSHCDKTFRQKQLLDMHFKRYHD----PNFVPAAFVCSKCGKTFTRRNTMARHADN 69
Query: 173 HARE 176
A
Sbjct: 70 CAGP 73
Score = 68.7 bits (169), Expect = 5e-15
Identities = 19/120 (15%), Positives = 30/120 (25%), Gaps = 48/120 (40%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRW 100
KP++CS C KTF +++ L H + +
Sbjct: 14 KPYACSHCDKTFRQKQLLDMHFKRYHDPNFVP---------------------------- 45
Query: 101 VACQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTF 160
F C C + F R+ + RH A G +
Sbjct: 46 ------------AAFVCSKCGKTFTRRNTMARH-ADNC-------AGPDGVEGENSGPSS 85
Score = 41.7 bits (99), Expect = 2e-05
Identities = 9/48 (18%), Positives = 13/48 (27%), Gaps = 8/48 (16%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTF 52
F C C + F R+ + RH A G +
Sbjct: 46 AAFVCSKCGKTFTRRNTMARH-ADNC-------AGPDGVEGENSGPSS 85
Score = 34.0 bits (79), Expect = 0.010
Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 283 PPKPIPKCDVCKKVFSRRSHLLRHLKRLH 311
P C C K F+RR+ + RH
Sbjct: 44 VPAAF-VCSKCGKTFTRRNTMARH-ADNC 70
Score = 31.7 bits (73), Expect = 0.051
Identities = 6/23 (26%), Positives = 10/23 (43%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
C C K F ++ L H + +
Sbjct: 17 ACSHCDKTFRQKQLLDMH-FKRY 38
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 70.3 bits (173), Expect = 2e-15
Identities = 33/137 (24%), Positives = 49/137 (35%), Gaps = 56/137 (40%)
Query: 41 KPFSCSV--CGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVR 98
+ C C K +T+ HL+ H + H E
Sbjct: 14 RIHYCDYPGCTKVYTKSSHLKAHLRTHTGE------------------------------ 43
Query: 99 RWVACQRIEGIDVVRPFQC--DVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC 156
+P++C + C+ F R + L RH R H GA KPF C VC
Sbjct: 44 --------------KPYKCTWEGCDWRFARSDELTRHY-RKH-----TGA--KPFQCGVC 81
Query: 157 GKTFTRREHLRRHQQIH 173
++F+R +HL H + H
Sbjct: 82 NRSFSRSDHLALHMKRH 98
Score = 62.6 bits (153), Expect = 1e-12
Identities = 35/136 (25%), Positives = 46/136 (33%), Gaps = 56/136 (41%)
Query: 5 RPFQCDV--CNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV--CGKTFTRREHLRR 60
R CD C + + + HL H R H + KP+ C+ C F R + L R
Sbjct: 14 RIHYCDYPGCTKVYTKSSHLKAH-LRTHTGE-------KPYKCTWEGCDWRFARSDELTR 65
Query: 61 HQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVC 120
H + H TG +PFQC VC
Sbjct: 66 HYRKH--------------TG------------------------------AKPFQCGVC 81
Query: 121 NQGFVRKEHLVRHRKR 136
N+ F R +HL H KR
Sbjct: 82 NRSFSRSDHLALHMKR 97
Score = 59.9 bits (146), Expect = 8e-12
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 10/63 (15%)
Query: 5 RPFQC--DVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQ 62
+P++C + C+ F R + L RH R H GA KPF C VC ++F+R +HL H
Sbjct: 44 KPYKCTWEGCDWRFARSDELTRHY-RKH-----TGA--KPFQCGVCNRSFSRSDHLALHM 95
Query: 63 QIH 65
+ H
Sbjct: 96 KRH 98
Score = 37.6 bits (88), Expect = 6e-04
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 4 VRPFQCDVCNQGFVRKEHLVRHRKR 28
+PFQC VCN+ F R +HL H KR
Sbjct: 73 AKPFQCGVCNRSFSRSDHLALHMKR 97
Score = 34.5 bits (80), Expect = 0.007
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 289 KCDVCKKVFSRRSHLLRHLKR 309
+C VC + FSR HL H+KR
Sbjct: 77 QCGVCNRSFSRSDHLALHMKR 97
Score = 28.0 bits (63), Expect = 1.6
Identities = 10/19 (52%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Query: 293 CKKVFSRRSHLLRHLKRLH 311
C KV+++ SHL HL R H
Sbjct: 23 CTKVYTKSSHLKAHL-RTH 40
Score = 26.0 bits (58), Expect = 7.9
Identities = 10/25 (40%), Positives = 12/25 (48%), Gaps = 3/25 (12%)
Query: 289 KC--DVCKKVFSRRSHLLRHLKRLH 311
KC + C F+R L RH R H
Sbjct: 47 KCTWEGCDWRFARSDELTRH-YRKH 70
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 66.8 bits (164), Expect = 2e-14
Identities = 12/65 (18%), Positives = 22/65 (33%), Gaps = 7/65 (10%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQ- 63
+P++C +C+ F + + H F C C R+ L H +
Sbjct: 14 KPYECYICHARFTQSGTMKMH-ILQK-----HTENVAKFHCPHCDTVIARKSDLGVHLRK 67
Query: 64 IHARE 68
H+
Sbjct: 68 QHSYS 72
Score = 66.8 bits (164), Expect = 2e-14
Identities = 12/65 (18%), Positives = 22/65 (33%), Gaps = 7/65 (10%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQ- 171
+P++C +C+ F + + H F C C R+ L H +
Sbjct: 14 KPYECYICHARFTQSGTMKMH-ILQK-----HTENVAKFHCPHCDTVIARKSDLGVHLRK 67
Query: 172 IHARE 176
H+
Sbjct: 68 QHSYS 72
Score = 60.2 bits (147), Expect = 4e-12
Identities = 16/98 (16%), Positives = 25/98 (25%), Gaps = 42/98 (42%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRW 100
KP+ C +C FT+ ++ H
Sbjct: 14 KPYECYICHARFTQSGTMKMHILQK--------------HT------------------- 40
Query: 101 VACQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRKRAH 138
+ V F C C+ RK L H ++ H
Sbjct: 41 ---------ENVAKFHCPHCDTVIARKSDLGVHLRKQH 69
Score = 38.7 bits (91), Expect = 2e-04
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
C C V +R+S L HL++ H
Sbjct: 47 HCPHCDTVIARKSDLGVHLRKQH 69
Score = 37.1 bits (87), Expect = 6e-04
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 4 VRPFQCDVCNQGFVRKEHLVRHRKRAH 30
V F C C+ RK L H ++ H
Sbjct: 43 VAKFHCPHCDTVIARKSDLGVHLRKQH 69
Score = 32.5 bits (75), Expect = 0.023
Identities = 4/23 (17%), Positives = 9/23 (39%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
+C +C F++ + H
Sbjct: 17 ECYICHARFTQSGTMKMH-ILQK 38
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 72
Score = 61.7 bits (151), Expect = 1e-12
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 8/64 (12%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 64
+P+ C C + F R LV+H+ R H E KP+ C CGK F++ L HQ+I
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQ-RVHT------GE-KPYKCLECGKAFSQNSGLINHQRI 64
Query: 65 HARE 68
H
Sbjct: 65 HTSG 68
Score = 61.7 bits (151), Expect = 1e-12
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 8/64 (12%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 172
+P+ C C + F R LV+H+ R H E KP+ C CGK F++ L HQ+I
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQ-RVHT------GE-KPYKCLECGKAFSQNSGLINHQRI 64
Query: 173 HARE 176
H
Sbjct: 65 HTSG 68
Score = 35.1 bits (82), Expect = 0.003
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
KC C K FS+ S L+ H +R+H
Sbjct: 44 KCLECGKAFSQNSGLINH-QRIH 65
Score = 34.0 bits (79), Expect = 0.006
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
C C K FSR S L++H +R+H
Sbjct: 16 GCVECGKAFSRSSILVQH-QRVH 37
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 60.9 bits (149), Expect = 2e-12
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 8/63 (12%)
Query: 6 PFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIH 65
P++CD C F K +L H K H E KP+ C++CG F R +L+ H +IH
Sbjct: 17 PYKCDRCQASFRYKGNLASH-KTVHT------GE-KPYRCNICGAQFNRPANLKTHTRIH 68
Query: 66 ARE 68
+ E
Sbjct: 69 SGE 71
Score = 60.9 bits (149), Expect = 2e-12
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 8/63 (12%)
Query: 114 PFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIH 173
P++CD C F K +L H K H E KP+ C++CG F R +L+ H +IH
Sbjct: 17 PYKCDRCQASFRYKGNLASH-KTVHT------GE-KPYRCNICGAQFNRPANLKTHTRIH 68
Query: 174 ARE 176
+ E
Sbjct: 69 SGE 71
Score = 51.3 bits (124), Expect = 5e-09
Identities = 20/118 (16%), Positives = 34/118 (28%), Gaps = 53/118 (44%)
Query: 21 HLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALT 80
H H ++ KP+ C C +F + +L H+ +H E
Sbjct: 4 HHHHH-SHMT------HSD-KPYKCDRCQASFRYKGNLASHKTVHTGE------------ 43
Query: 81 GLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRKRAH 138
+P++C++C F R +L H R H
Sbjct: 44 --------------------------------KPYRCNICGAQFNRPANLKTH-TRIH 68
Score = 47.1 bits (113), Expect = 1e-07
Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 8/48 (16%)
Query: 129 HLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARE 176
H H ++ KP+ C C +F + +L H+ +H E
Sbjct: 4 HHHHH-SHMT------HSD-KPYKCDRCQASFRYKGNLASHKTVHTGE 43
Score = 36.3 bits (85), Expect = 0.001
Identities = 8/23 (34%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
+C++C F+R ++L H R+H
Sbjct: 47 RCNICGAQFNRPANLKTH-TRIH 68
Score = 35.9 bits (84), Expect = 0.002
Identities = 9/23 (39%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
KCD C+ F + +L H K +H
Sbjct: 19 KCDRCQASFRYKGNLASH-KTVH 40
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 61.0 bits (149), Expect = 2e-12
Identities = 19/125 (15%), Positives = 33/125 (26%), Gaps = 57/125 (45%)
Query: 41 KPFSCSV--CGKTFTRREHLRRHQQI-HARELLQSSMDMSALTGLAEEVFPTPLRLDENV 97
C CG+ F+ R++L H++ H +
Sbjct: 6 SGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQ----------------------------- 36
Query: 98 RRWVACQRIEGIDVVRPFQCD--VCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV 155
+ F C C + F K+HL H + H + + C
Sbjct: 37 ---------------KSFSCPEPACGKSFNFKKHLKEH-MKLHSDT-------RDYICEF 73
Query: 156 CGKTF 160
G +
Sbjct: 74 SGPSS 78
Score = 60.6 bits (148), Expect = 3e-12
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 11/65 (16%)
Query: 5 RPFQCDV--CNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS--VCGKTFTRREHLRR 60
CD C + F +++L H+K H + K FSC CGK+F ++HL+
Sbjct: 6 SGMPCDFPGCGRIFSNRQYLNHHKKYQHI------HQ-KSFSCPEPACGKSFNFKKHLKE 58
Query: 61 HQQIH 65
H ++H
Sbjct: 59 HMKLH 63
Score = 60.6 bits (148), Expect = 3e-12
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 11/65 (16%)
Query: 113 RPFQCDV--CNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS--VCGKTFTRREHLRR 168
CD C + F +++L H+K H + K FSC CGK+F ++HL+
Sbjct: 6 SGMPCDFPGCGRIFSNRQYLNHHKKYQHI------HQ-KSFSCPEPACGKSFNFKKHLKE 58
Query: 169 HQQIH 173
H ++H
Sbjct: 59 HMKLH 63
Score = 44.5 bits (106), Expect = 1e-06
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 10/50 (20%)
Query: 5 RPFQCD--VCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTF 52
+ F C C + F K+HL H + H + + C G +
Sbjct: 37 KSFSCPEPACGKSFNFKKHLKEH-MKLHSDT-------RDYICEFSGPSS 78
Score = 32.9 bits (76), Expect = 0.019
Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 289 KCDV--CKKVFSRRSHLLRHLKRLH 311
CD C ++FS R +L H K H
Sbjct: 9 PCDFPGCGRIFSNRQYLNHHKKYQH 33
Score = 29.1 bits (66), Expect = 0.38
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 3/25 (12%)
Query: 289 KCD--VCKKVFSRRSHLLRHLKRLH 311
C C K F+ + HL H +LH
Sbjct: 40 SCPEPACGKSFNFKKHLKEH-MKLH 63
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 60.9 bits (149), Expect = 2e-12
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 8/61 (13%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 64
R ++CD C + F L +H +R H E KP+ C CGK F +R HL H ++
Sbjct: 17 RRYKCDECGKSFSHSSDLSKH-RRTHT------GE-KPYKCDECGKAFIQRSHLIGHHRV 68
Query: 65 H 65
H
Sbjct: 69 H 69
Score = 60.9 bits (149), Expect = 2e-12
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 8/61 (13%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 172
R ++CD C + F L +H +R H E KP+ C CGK F +R HL H ++
Sbjct: 17 RRYKCDECGKSFSHSSDLSKH-RRTHT------GE-KPYKCDECGKAFIQRSHLIGHHRV 68
Query: 173 H 173
H
Sbjct: 69 H 69
Score = 52.8 bits (128), Expect = 1e-09
Identities = 23/118 (19%), Positives = 39/118 (33%), Gaps = 53/118 (44%)
Query: 21 HLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALT 80
R + E + + C CGK+F+ L +H++ H T
Sbjct: 5 SSGRS-EWQQ-------RERRRYKCDECGKSFSHSSDLSKHRRTH--------------T 42
Query: 81 GLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRKRAH 138
G E +P++CD C + F+++ HL+ H R H
Sbjct: 43 G--E----------------------------KPYKCDECGKAFIQRSHLIGH-HRVH 69
Score = 48.2 bits (116), Expect = 7e-08
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 8/45 (17%)
Query: 129 HLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIH 173
R + E + + C CGK+F+ L +H++ H
Sbjct: 5 SSGRS-EWQQ-------RERRRYKCDECGKSFSHSSDLSKHRRTH 41
Score = 36.7 bits (86), Expect = 9e-04
Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
KCD C K F +RSHL+ H R+H
Sbjct: 48 KCDECGKAFIQRSHLIGH-HRVH 69
Score = 35.5 bits (83), Expect = 0.002
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
KCD C K FS S L +H +R H
Sbjct: 20 KCDECGKSFSHSSDLSKH-RRTH 41
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 60.7 bits (148), Expect = 3e-12
Identities = 28/128 (21%), Positives = 41/128 (32%), Gaps = 53/128 (41%)
Query: 48 CGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIE 107
CGK F + L+ HQ H T
Sbjct: 9 CGKAFKKHNQLKVHQFSH--------------TQQ------------------------- 29
Query: 108 GIDVVRPFQCDV--CNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREH 165
P++C C++ F L RH ++ H P + K SCS GKT+T +
Sbjct: 30 -----LPYECPHEGCDKRFSLPSRLKRH-EKVHAGYPCK----KDDSCSFVGKTWT--LY 77
Query: 166 LRRHQQIH 173
L+ + H
Sbjct: 78 LKHVAECH 85
Score = 54.5 bits (132), Expect = 5e-10
Identities = 20/136 (14%), Positives = 36/136 (26%), Gaps = 56/136 (41%)
Query: 7 FQCDV--CNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV--CGKTFTRREHLRRHQ 62
+ C C + F + L H + +H + P+ C C K F+ L+RH+
Sbjct: 2 YVCHFENCGKAFKKHNQLKVH-QFSHT------QQ-LPYECPHEGCDKRFSLPSRLKRHE 53
Query: 63 QIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVCNQ 122
++H G + D C+
Sbjct: 54 KVH--------------AG------------------------------YPCKKDDSCSF 69
Query: 123 GFVRKEHLVRHRKRAH 138
++H H
Sbjct: 70 VGKTWTLYLKHVAECH 85
Score = 50.3 bits (121), Expect = 2e-08
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
Query: 5 RPFQCDV--CNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQ 62
P++C C++ F L RH ++ H P + K SCS GKT+T +L+
Sbjct: 30 LPYECPHEGCDKRFSLPSRLKRH-EKVHAGYPCK----KDDSCSFVGKTWT--LYLKHVA 82
Query: 63 QIH 65
+ H
Sbjct: 83 ECH 85
Score = 46.1 bits (110), Expect = 5e-07
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 12/63 (19%)
Query: 115 FQCDV--CNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV--CGKTFTRREHLRRHQ 170
+ C C + F + L H + +H + P+ C C K F+ L+RH+
Sbjct: 2 YVCHFENCGKAFKKHNQLKVH-QFSHT------QQ-LPYECPHEGCDKRFSLPSRLKRHE 53
Query: 171 QIH 173
++H
Sbjct: 54 KVH 56
Score = 37.2 bits (87), Expect = 7e-04
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
K D C V + L+H+ H
Sbjct: 63 KDDSCSFVGKTWTLYLKHVAECH 85
Score = 30.3 bits (69), Expect = 0.17
Identities = 7/25 (28%), Positives = 10/25 (40%), Gaps = 3/25 (12%)
Query: 289 KCDV--CKKVFSRRSHLLRHLKRLH 311
C C K F + + L H + H
Sbjct: 3 VCHFENCGKAFKKHNQLKVH-QFSH 26
Score = 28.7 bits (65), Expect = 0.64
Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 3/25 (12%)
Query: 289 KCDV--CKKVFSRRSHLLRHLKRLH 311
+C C K FS S L RH +++H
Sbjct: 33 ECPHEGCDKRFSLPSRLKRH-EKVH 56
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 58.3 bits (142), Expect = 2e-11
Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 8/61 (13%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 64
P +C C+ K L H +R H D +PF C+ C + +L +H +
Sbjct: 8 HPEKCSECSYSCSSKAALRIH-ERIHCTD-------RPFKCNYCSFDTKQPSNLSKHMKK 59
Query: 65 H 65
Sbjct: 60 F 60
Score = 58.3 bits (142), Expect = 2e-11
Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 8/61 (13%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 172
P +C C+ K L H +R H D +PF C+ C + +L +H +
Sbjct: 8 HPEKCSECSYSCSSKAALRIH-ERIHCTD-------RPFKCNYCSFDTKQPSNLSKHMKK 59
Query: 173 H 173
Sbjct: 60 F 60
Score = 51.0 bits (123), Expect = 7e-09
Identities = 16/98 (16%), Positives = 28/98 (28%), Gaps = 45/98 (45%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRW 100
P CS C + + + LR H++IH
Sbjct: 8 HPEKCSECSYSCSSKAALRIHERIH--------------CT------------------- 34
Query: 101 VACQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRKRAH 138
RPF+C+ C+ + +L +H +
Sbjct: 35 -----------DRPFKCNYCSFDTKQPSNLSKH-MKKF 60
Score = 33.6 bits (78), Expect = 0.009
Identities = 6/23 (26%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
KC+ C + S+L +H+ +
Sbjct: 39 KCNYCSFDTKQPSNLSKHM-KKF 60
Score = 33.2 bits (77), Expect = 0.012
Identities = 8/23 (34%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
KC C S ++ L H +R+H
Sbjct: 11 KCSECSYSCSSKAALRIH-ERIH 32
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 56.2 bits (136), Expect = 9e-11
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 10/63 (15%)
Query: 5 RPFQCDV--CNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQ 62
RP+ C V C++ F R + L RH R H KPF C +C + F+R +HL H
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHI-RIH-------TGQKPFQCRICMRNFSRSDHLTTHI 69
Query: 63 QIH 65
+ H
Sbjct: 70 RTH 72
Score = 56.2 bits (136), Expect = 9e-11
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 10/63 (15%)
Query: 113 RPFQCDV--CNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQ 170
RP+ C V C++ F R + L RH R H KPF C +C + F+R +HL H
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHI-RIH-------TGQKPFQCRICMRNFSRSDHLTTHI 69
Query: 171 QIH 173
+ H
Sbjct: 70 RTH 72
Score = 51.2 bits (123), Expect = 5e-09
Identities = 23/98 (23%), Positives = 35/98 (35%), Gaps = 46/98 (46%)
Query: 41 KPFSCSV--CGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVR 98
+P++C V C + F+R + L RH +IH TG
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIH--------------TG----------------- 46
Query: 99 RWVACQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRKR 136
+PFQC +C + F R +HL H +
Sbjct: 47 -------------QKPFQCRICMRNFSRSDHLTTHIRT 71
Score = 38.8 bits (91), Expect = 1e-04
Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 149 KPFSCSV--CGKTFTRREHLRRHQQIHARE 176
+P++C V C + F+R + L RH +IH +
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQ 47
Score = 36.9 bits (86), Expect = 7e-04
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 4 VRPFQCDVCNQGFVRKEHLVRHRKR 28
+PFQC +C + F R +HL H +
Sbjct: 47 QKPFQCRICMRNFSRSDHLTTHIRT 71
Score = 33.0 bits (76), Expect = 0.016
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 289 KCDVCKKVFSRRSHLLRHLKR 309
+C +C + FSR HL H++
Sbjct: 51 QCRICMRNFSRSDHLTTHIRT 71
Score = 26.5 bits (59), Expect = 3.3
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 7/41 (17%)
Query: 273 LMRPVIPRERPPKPIPKCDV--CKKVFSRRSHLLRHLKRLH 311
L+ V+P+ RP C V C + FSR L RH R+H
Sbjct: 9 LLNYVVPKMRPYA----CPVESCDRRFSRSDELTRH-IRIH 44
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 53.7 bits (130), Expect = 4e-10
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 7/49 (14%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFT 53
+P+ C C +GF R +HL H K+ H +E +P C V +
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHT------SE-RPHKCQVWVSGPS 52
Score = 53.7 bits (130), Expect = 4e-10
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 7/49 (14%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFT 161
+P+ C C +GF R +HL H K+ H +E +P C V +
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHT------SE-RPHKCQVWVSGPS 52
Score = 45.3 bits (108), Expect = 4e-07
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 41 KPFSCSVCGKTFTRREHLRRH-QQIH 65
KP+ C CGK F+R +HL H +Q+H
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVH 36
Score = 45.3 bits (108), Expect = 4e-07
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 149 KPFSCSVCGKTFTRREHLRRH-QQIH 173
KP+ C CGK F+R +HL H +Q+H
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVH 36
Score = 43.3 bits (103), Expect = 2e-06
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
C C K FSR HL H+K++H
Sbjct: 14 ICQSCGKGFSRPDHLNGHIKQVH 36
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 53.4 bits (129), Expect = 4e-10
Identities = 16/28 (57%), Positives = 21/28 (75%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
K ++C+ CGK FTR HL RHQ+IH R+
Sbjct: 11 KSYNCNECGKAFTRIFHLTRHQKIHTRK 38
Score = 53.4 bits (129), Expect = 4e-10
Identities = 16/28 (57%), Positives = 21/28 (75%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
K ++C+ CGK FTR HL RHQ+IH R+
Sbjct: 11 KSYNCNECGKAFTRIFHLTRHQKIHTRK 38
Score = 37.6 bits (88), Expect = 2e-04
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLHNIDPPPSS 319
C+ C K F+R HL RH +++H PSS
Sbjct: 14 NCNECGKAFTRIFHLTRH-QKIHTRKSGPSS 43
Score = 31.0 bits (71), Expect = 0.039
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRK 27
+ + C+ C + F R HL RH+K
Sbjct: 11 KSYNCNECGKAFTRIFHLTRHQK 33
Score = 31.0 bits (71), Expect = 0.039
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRK 135
+ + C+ C + F R HL RH+K
Sbjct: 11 KSYNCNECGKAFTRIFHLTRHQK 33
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 54.2 bits (130), Expect = 8e-10
Identities = 15/65 (23%), Positives = 22/65 (33%), Gaps = 1/65 (1%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEA-KPFSCSVCGKTFTRREHLRRHQQ 63
C++ F LV H H P + C GK+F + L H +
Sbjct: 24 LSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIR 83
Query: 64 IHARE 68
+H E
Sbjct: 84 VHTGE 88
Score = 54.2 bits (130), Expect = 8e-10
Identities = 15/65 (23%), Positives = 22/65 (33%), Gaps = 1/65 (1%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEA-KPFSCSVCGKTFTRREHLRRHQQ 171
C++ F LV H H P + C GK+F + L H +
Sbjct: 24 LSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIR 83
Query: 172 IHARE 176
+H E
Sbjct: 84 VHTGE 88
Score = 34.9 bits (80), Expect = 0.005
Identities = 20/117 (17%), Positives = 26/117 (22%), Gaps = 45/117 (38%)
Query: 39 EAKPFSCSVCGKTFTRREHLRRH-QQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENV 97
C +TF+ L H H Q+ +V
Sbjct: 22 AQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQN----------------------NHV 59
Query: 98 RRWVACQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 154
W C R + F K LV H R H + K S
Sbjct: 60 CYWEECPR--------------EGKSFKAKYKLVNHI-RVHTGE-------KSGPSS 94
Score = 31.5 bits (71), Expect = 0.084
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
C + FS L+ H+ H
Sbjct: 27 PKKSCDRTFSTMHELVTHVTMEH 49
Score = 28.8 bits (64), Expect = 0.88
Identities = 7/22 (31%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 290 CDVCKKVFSRRSHLLRHLKRLH 311
C K F + L+ H+ R+H
Sbjct: 65 CPREGKSFKAKYKLVNHI-RVH 85
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 51.4 bits (124), Expect = 2e-09
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
+PF C+ CGK F RR HL H ++H+RE
Sbjct: 11 RPFKCNECGKGFGRRSHLAGHLRLHSRE 38
Score = 51.4 bits (124), Expect = 2e-09
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
+PF C+ CGK F RR HL H ++H+RE
Sbjct: 11 RPFKCNECGKGFGRRSHLAGHLRLHSRE 38
Score = 37.9 bits (89), Expect = 2e-04
Identities = 14/23 (60%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
KC+ C K F RRSHL H RLH
Sbjct: 14 KCNECGKGFGRRSHLAGH-LRLH 35
Score = 33.3 bits (77), Expect = 0.007
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 8/42 (19%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 46
RPF+C+ C +GF R+ HL H R H + K S
Sbjct: 11 RPFKCNECGKGFGRRSHLAGHL-RLH-------SREKSSGPS 44
Score = 33.3 bits (77), Expect = 0.007
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 8/42 (19%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 154
RPF+C+ C +GF R+ HL H R H + K S
Sbjct: 11 RPFKCNECGKGFGRRSHLAGHL-RLH-------SREKSSGPS 44
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 51.6 bits (124), Expect = 2e-09
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARELLQSS 73
KP+SC+ C +TF+ L +HQ++H + SS
Sbjct: 9 KPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 51.6 bits (124), Expect = 2e-09
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARELLQSS 181
KP+SC+ C +TF+ L +HQ++H + SS
Sbjct: 9 KPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 38.8 bits (91), Expect = 6e-05
Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLHNIDPPPSS 319
C CK+ FS + L++H +++H + PSS
Sbjct: 12 SCAECKETFSDNNRLVQH-QKMHTVKSGPSS 41
Score = 32.7 bits (75), Expect = 0.010
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRK 27
+P+ C C + F LV+H+K
Sbjct: 9 KPYSCAECKETFSDNNRLVQHQK 31
Score = 32.7 bits (75), Expect = 0.010
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRK 135
+P+ C C + F LV+H+K
Sbjct: 9 KPYSCAECKETFSDNNRLVQHQK 31
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 51.4 bits (124), Expect = 2e-09
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
+P+ C+ CGK F R HL H + H RE
Sbjct: 11 RPYGCNECGKNFGRHSHLIEHLKRHFRE 38
Score = 51.4 bits (124), Expect = 2e-09
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
+P+ C+ CGK F R HL H + H RE
Sbjct: 11 RPYGCNECGKNFGRHSHLIEHLKRHFRE 38
Score = 36.7 bits (86), Expect = 3e-04
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
C+ C K F R SHL+ H + H
Sbjct: 14 GCNECGKNFGRHSHLIEH-LKRH 35
Score = 36.0 bits (84), Expect = 7e-04
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 8/42 (19%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 46
RP+ C+ C + F R HL+ H + H K S
Sbjct: 11 RPYGCNECGKNFGRHSHLIEH-LKRH-------FREKSSGPS 44
Score = 36.0 bits (84), Expect = 7e-04
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 8/42 (19%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 154
RP+ C+ C + F R HL+ H + H K S
Sbjct: 11 RPYGCNECGKNFGRHSHLIEH-LKRH-------FREKSSGPS 44
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 4e-09
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
KP+ C C KTF + HL +H+++H E
Sbjct: 11 KPYECKECRKTFIQIGHLNQHKRVHTGE 38
Score = 51.0 bits (123), Expect = 4e-09
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
KP+ C C KTF + HL +H+++H E
Sbjct: 11 KPYECKECRKTFIQIGHLNQHKRVHTGE 38
Score = 36.4 bits (85), Expect = 5e-04
Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
+C C+K F + HL +H KR+H
Sbjct: 14 ECKECRKTFIQIGHLNQH-KRVH 35
Score = 31.4 bits (72), Expect = 0.033
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 8/42 (19%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 46
+P++C C + F++ HL +H KR H + S
Sbjct: 11 KPYECKECRKTFIQIGHLNQH-KRVH-------TGERSSGPS 44
Score = 31.4 bits (72), Expect = 0.033
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 8/42 (19%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 154
+P++C C + F++ HL +H KR H + S
Sbjct: 11 KPYECKECRKTFIQIGHLNQH-KRVH-------TGERSSGPS 44
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2yta_A
Length = 42
Score = 49.6 bits (119), Expect = 1e-08
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
P+ C CGK+FT+R L HQ+ ++
Sbjct: 10 TPYLCGQCGKSFTQRGSLAVHQRSCSQS 37
Score = 49.6 bits (119), Expect = 1e-08
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
P+ C CGK+FT+R L HQ+ ++
Sbjct: 10 TPYLCGQCGKSFTQRGSLAVHQRSCSQS 37
Score = 28.8 bits (65), Expect = 0.22
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLHNIDPPPS 318
C C K F++R L H +R + P S
Sbjct: 13 LCGQCGKSFTQRGSLAVH-QRSCSQSGPSS 41
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 49.5 bits (119), Expect = 1e-08
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
K C CG+ FT + HL +HQ+IH
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQRIH 35
Score = 49.5 bits (119), Expect = 1e-08
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
K C CG+ FT + HL +HQ+IH
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQRIH 35
Score = 35.2 bits (82), Expect = 0.001
Identities = 9/23 (39%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
+C C + F+ +SHL +H +R+H
Sbjct: 14 QCHECGRGFTLKSHLNQH-QRIH 35
Score = 32.9 bits (76), Expect = 0.010
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 8/42 (19%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 46
+ QC C +GF K HL +H +R H E KP S
Sbjct: 11 KSHQCHECGRGFTLKSHLNQH-QRIHT------GE-KPSGPS 44
Score = 32.9 bits (76), Expect = 0.010
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 8/42 (19%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 154
+ QC C +GF K HL +H +R H E KP S
Sbjct: 11 KSHQCHECGRGFTLKSHLNQH-QRIHT------GE-KPSGPS 44
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 49.5 bits (119), Expect = 1e-08
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
P+ CS C K+F+ + L HQ++H RE
Sbjct: 11 NPYKCSQCEKSFSGKLRLLVHQRMHTRE 38
Score = 49.5 bits (119), Expect = 1e-08
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
P+ CS C K+F+ + L HQ++H RE
Sbjct: 11 NPYKCSQCEKSFSGKLRLLVHQRMHTRE 38
Score = 34.4 bits (80), Expect = 0.003
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
KC C+K FS + LL H +R+H
Sbjct: 14 KCSQCEKSFSGKLRLLVH-QRMH 35
Score = 29.0 bits (66), Expect = 0.19
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 8/42 (19%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 46
P++C C + F K L+ H+ R H E KP S
Sbjct: 11 NPYKCSQCEKSFSGKLRLLVHQ-RMHT------RE-KPSGPS 44
Score = 29.0 bits (66), Expect = 0.19
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 8/42 (19%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 154
P++C C + F K L+ H+ R H E KP S
Sbjct: 11 NPYKCSQCEKSFSGKLRLLVHQ-RMHT------RE-KPSGPS 44
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.0 bits (118), Expect = 2e-08
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
KPF C +CGK+F R L RH +H
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHSMVH 35
Score = 49.0 bits (118), Expect = 2e-08
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
KPF C +CGK+F R L RH +H
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHSMVH 35
Score = 37.9 bits (89), Expect = 2e-04
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
KCD+C K F RS L RH +H
Sbjct: 14 KCDICGKSFCGRSRLNRH-SMVH 35
Score = 32.8 bits (76), Expect = 0.010
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 8/42 (19%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 46
+PF+CD+C + F + L RH H AE KP S
Sbjct: 11 KPFKCDICGKSFCGRSRLNRH-SMVHT------AE-KPSGPS 44
Score = 32.8 bits (76), Expect = 0.010
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 8/42 (19%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 154
+PF+CD+C + F + L RH H AE KP S
Sbjct: 11 KPFKCDICGKSFCGRSRLNRH-SMVHT------AE-KPSGPS 44
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.0 bits (118), Expect = 2e-08
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
KP+SC+VCGK F HL +H ++H +E
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLRVHTQE 38
Score = 49.0 bits (118), Expect = 2e-08
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
KP+SC+VCGK F HL +H ++H +E
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLRVHTQE 38
Score = 36.3 bits (85), Expect = 6e-04
Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
C+VC K F +HL +H R+H
Sbjct: 14 SCNVCGKAFVLSAHLNQH-LRVH 35
Score = 32.1 bits (74), Expect = 0.020
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 8/42 (19%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 46
+P+ C+VC + FV HL +H R H E S
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQH-LRVHT------QE-TLSGPS 44
Score = 32.1 bits (74), Expect = 0.020
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 8/42 (19%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 154
+P+ C+VC + FV HL +H R H E S
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQH-LRVHT------QE-TLSGPS 44
>2epa_A Krueppel-like factor 10; transforming growth
factor-beta-inducible early growth response protein 1,
TGFB-inducible early growth response protein 1; NMR
{Homo sapiens}
Length = 72
Score = 49.7 bits (119), Expect = 2e-08
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 12/65 (18%)
Query: 5 RPFQCDV--CNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV--CGKTFTRREHLRR 60
R C C + + + HL H R H + KPFSCS C + F R + L R
Sbjct: 16 RSHICSHPGCGKTYFKSSHLKAH-TRTHTGE-------KPFSCSWKGCERRFARSDELSR 67
Query: 61 HQQIH 65
H++ H
Sbjct: 68 HRRTH 72
Score = 49.7 bits (119), Expect = 2e-08
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 12/65 (18%)
Query: 113 RPFQCDV--CNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSV--CGKTFTRREHLRR 168
R C C + + + HL H R H + KPFSCS C + F R + L R
Sbjct: 16 RSHICSHPGCGKTYFKSSHLKAH-TRTHTGE-------KPFSCSWKGCERRFARSDELSR 67
Query: 169 HQQIH 173
H++ H
Sbjct: 68 HRRTH 72
Score = 40.8 bits (96), Expect = 3e-05
Identities = 23/102 (22%), Positives = 31/102 (30%), Gaps = 49/102 (48%)
Query: 41 KPFSCSV--CGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVR 98
+ CS CGKT+ + HL+ H + H E
Sbjct: 16 RSHICSHPGCGKTYFKSSHLKAHTRTHTGE------------------------------ 45
Query: 99 RWVACQRIEGIDVVRPFQCDV--CNQGFVRKEHLVRHRKRAH 138
+PF C C + F R + L RHR R H
Sbjct: 46 --------------KPFSCSWKGCERRFARSDELSRHR-RTH 72
Score = 39.3 bits (92), Expect = 1e-04
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 149 KPFSCSV--CGKTFTRREHLRRHQQIHARE 176
+ CS CGKT+ + HL+ H + H E
Sbjct: 16 RSHICSHPGCGKTYFKSSHLKAHTRTHTGE 45
Score = 28.9 bits (65), Expect = 0.50
Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 4/36 (11%)
Query: 279 PRERPPKPIP-KCDV--CKKVFSRRSHLLRHLKRLH 311
P+ + C C K + + SHL H R H
Sbjct: 8 PQIDSSRIRSHICSHPGCGKTYFKSSHLKAHT-RTH 42
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 48.7 bits (117), Expect = 2e-08
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
KPF CS C K F+ + +L HQQ HA E
Sbjct: 9 KPFGCSCCEKAFSSKSYLLVHQQTHAEE 36
Score = 48.7 bits (117), Expect = 2e-08
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
KPF CS C K F+ + +L HQQ HA E
Sbjct: 9 KPFGCSCCEKAFSSKSYLLVHQQTHAEE 36
Score = 33.7 bits (78), Expect = 0.005
Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
C C+K FS +S+LL H ++ H
Sbjct: 12 GCSCCEKAFSSKSYLLVH-QQTH 33
Score = 33.3 bits (77), Expect = 0.006
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 8/42 (19%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 46
+PF C C + F K +L+ H ++ H AE KP S
Sbjct: 9 KPFGCSCCEKAFSSKSYLLVH-QQTH-------AEEKPSGPS 42
Score = 33.3 bits (77), Expect = 0.006
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 8/42 (19%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 154
+PF C C + F K +L+ H ++ H AE KP S
Sbjct: 9 KPFGCSCCEKAFSSKSYLLVH-QQTH-------AEEKPSGPS 42
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 3e-08
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
KP+ C VC K FT++ HL +HQ+ H E
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGE 38
Score = 48.3 bits (116), Expect = 3e-08
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
KP+ C VC K FT++ HL +HQ+ H E
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGE 38
Score = 33.3 bits (77), Expect = 0.006
Identities = 9/23 (39%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
+C VC K F++++HL +H ++ H
Sbjct: 14 ECKVCSKAFTQKAHLAQH-QKTH 35
Score = 29.8 bits (68), Expect = 0.13
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 8/42 (19%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 46
+P++C VC++ F +K HL +H ++ H E KP S
Sbjct: 11 KPYECKVCSKAFTQKAHLAQH-QKTHT------GE-KPSGPS 44
Score = 29.8 bits (68), Expect = 0.13
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 8/42 (19%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 154
+P++C VC++ F +K HL +H ++ H E KP S
Sbjct: 11 KPYECKVCSKAFTQKAHLAQH-QKTHT------GE-KPSGPS 44
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.2 bits (116), Expect = 3e-08
Identities = 15/25 (60%), Positives = 16/25 (64%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
KP+ C CGK F R HL RHQ IH
Sbjct: 11 KPYKCHECGKVFRRNSHLARHQLIH 35
Score = 48.2 bits (116), Expect = 3e-08
Identities = 15/25 (60%), Positives = 16/25 (64%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
KP+ C CGK F R HL RHQ IH
Sbjct: 11 KPYKCHECGKVFRRNSHLARHQLIH 35
Score = 36.7 bits (86), Expect = 4e-04
Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
KC C KVF R SHL RH + +H
Sbjct: 14 KCHECGKVFRRNSHLARH-QLIH 35
Score = 30.9 bits (71), Expect = 0.054
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 8/42 (19%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 46
+P++C C + F R HL RH + H KP S
Sbjct: 11 KPYKCHECGKVFRRNSHLARH-QLIH-------TGEKPSGPS 44
Score = 30.9 bits (71), Expect = 0.054
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 8/42 (19%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 154
+P++C C + F R HL RH + H KP S
Sbjct: 11 KPYKCHECGKVFRRNSHLARH-QLIH-------TGEKPSGPS 44
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 48.3 bits (116), Expect = 3e-08
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
KP+ C CG F + HLR H IH
Sbjct: 10 KPYKCETCGARFVQVAHLRAHVLIH 34
Score = 48.3 bits (116), Expect = 3e-08
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
KP+ C CG F + HLR H IH
Sbjct: 10 KPYKCETCGARFVQVAHLRAHVLIH 34
Score = 35.6 bits (83), Expect = 0.001
Identities = 8/23 (34%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
KC+ C F + +HL H +H
Sbjct: 13 KCETCGARFVQVAHLRAH-VLIH 34
Score = 32.9 bits (76), Expect = 0.009
Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAH 30
+P++C+ C FV+ HL H H
Sbjct: 10 KPYKCETCGARFVQVAHLRAH-VLIH 34
Score = 32.9 bits (76), Expect = 0.009
Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAH 138
+P++C+ C FV+ HL H H
Sbjct: 10 KPYKCETCGARFVQVAHLRAH-VLIH 34
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 3e-08
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
KPF C CGK FT+ HL HQ++H E
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVHTGE 38
Score = 48.3 bits (116), Expect = 3e-08
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
KPF C CGK FT+ HL HQ++H E
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVHTGE 38
Score = 34.8 bits (81), Expect = 0.002
Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
+C+ C K F++ SHL H +R+H
Sbjct: 14 QCEECGKRFTQNSHLHSH-QRVH 35
Score = 32.1 bits (74), Expect = 0.018
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 8/42 (19%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 46
+PFQC+ C + F + HL H+ R H E KP S
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQ-RVHT------GE-KPSGPS 44
Score = 32.1 bits (74), Expect = 0.018
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 8/42 (19%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 154
+PFQC+ C + F + HL H+ R H E KP S
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQ-RVHT------GE-KPSGPS 44
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 4e-08
Identities = 14/28 (50%), Positives = 21/28 (75%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
KP+ C+ CGK+F ++ HL RH++IH E
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIHTGE 38
Score = 48.3 bits (116), Expect = 4e-08
Identities = 14/28 (50%), Positives = 21/28 (75%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
KP+ C+ CGK+F ++ HL RH++IH E
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIHTGE 38
Score = 35.6 bits (83), Expect = 0.001
Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
C+ C K F ++SHL RH +R+H
Sbjct: 14 ICNECGKSFIQKSHLNRH-RRIH 35
Score = 32.1 bits (74), Expect = 0.015
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 8/42 (19%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 46
+P+ C+ C + F++K HL RH +R H E KP S
Sbjct: 11 KPYICNECGKSFIQKSHLNRH-RRIHT------GE-KPSGPS 44
Score = 32.1 bits (74), Expect = 0.015
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 8/42 (19%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 154
+P+ C+ C + F++K HL RH +R H E KP S
Sbjct: 11 KPYICNECGKSFIQKSHLNRH-RRIHT------GE-KPSGPS 44
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 4e-08
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
KPF C CGK F + HL H +IH E
Sbjct: 11 KPFKCKECGKAFRQNIHLASHLRIHTGE 38
Score = 47.9 bits (115), Expect = 4e-08
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
KPF C CGK F + HL H +IH E
Sbjct: 11 KPFKCKECGKAFRQNIHLASHLRIHTGE 38
Score = 35.2 bits (82), Expect = 0.001
Identities = 10/23 (43%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
KC C K F + HL H R+H
Sbjct: 14 KCKECGKAFRQNIHLASH-LRIH 35
Score = 30.5 bits (70), Expect = 0.056
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 8/42 (19%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 46
+PF+C C + F + HL H R H E KP S
Sbjct: 11 KPFKCKECGKAFRQNIHLASH-LRIHT------GE-KPSGPS 44
Score = 30.5 bits (70), Expect = 0.056
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 8/42 (19%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 154
+PF+C C + F + HL H R H E KP S
Sbjct: 11 KPFKCKECGKAFRQNIHLASH-LRIHT------GE-KPSGPS 44
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 4e-08
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
KP+ C CGK + RR +L HQ++H
Sbjct: 11 KPYKCEDCGKGYNRRLNLDMHQRVH 35
Score = 47.9 bits (115), Expect = 4e-08
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
KP+ C CGK + RR +L HQ++H
Sbjct: 11 KPYKCEDCGKGYNRRLNLDMHQRVH 35
Score = 36.3 bits (85), Expect = 6e-04
Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
KC+ C K ++RR +L H +R+H
Sbjct: 14 KCEDCGKGYNRRLNLDMH-QRVH 35
Score = 30.2 bits (69), Expect = 0.084
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 8/42 (19%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 46
+P++C+ C +G+ R+ +L H +R H E K S
Sbjct: 11 KPYKCEDCGKGYNRRLNLDMH-QRVHM------GE-KTSGPS 44
Score = 30.2 bits (69), Expect = 0.084
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 8/42 (19%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 154
+P++C+ C +G+ R+ +L H +R H E K S
Sbjct: 11 KPYKCEDCGKGYNRRLNLDMH-QRVHM------GE-KTSGPS 44
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 4e-08
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
PF CS CGK FT + +L HQ+IH E
Sbjct: 11 NPFICSECGKVFTHKTNLIIHQKIHTGE 38
Score = 47.9 bits (115), Expect = 4e-08
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
PF CS CGK FT + +L HQ+IH E
Sbjct: 11 NPFICSECGKVFTHKTNLIIHQKIHTGE 38
Score = 32.5 bits (75), Expect = 0.013
Identities = 8/23 (34%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
C C KVF+ +++L+ H +++H
Sbjct: 14 ICSECGKVFTHKTNLIIH-QKIH 35
Score = 30.5 bits (70), Expect = 0.055
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 8/42 (19%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 46
PF C C + F K +L+ H+ + H +P S
Sbjct: 11 NPFICSECGKVFTHKTNLIIHQ-KIH-------TGERPSGPS 44
Score = 30.5 bits (70), Expect = 0.055
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 8/42 (19%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 154
PF C C + F K +L+ H+ + H +P S
Sbjct: 11 NPFICSECGKVFTHKTNLIIHQ-KIH-------TGERPSGPS 44
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 4e-08
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
KP+ CS CGK+F+ L +H H RE
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITHTRE 38
Score = 47.9 bits (115), Expect = 4e-08
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
KP+ CS CGK+F+ L +H H RE
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITHTRE 38
Score = 36.0 bits (84), Expect = 7e-04
Identities = 8/23 (34%), Positives = 10/23 (43%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
+C C K FS L +H H
Sbjct: 14 QCSECGKSFSGSYRLTQH-WITH 35
Score = 29.8 bits (68), Expect = 0.10
Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 8/42 (19%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 46
+P+QC C + F L +H H KP S
Sbjct: 11 KPYQCSECGKSFSGSYRLTQH-WITH-------TREKPSGPS 44
Score = 29.8 bits (68), Expect = 0.10
Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 8/42 (19%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 154
+P+QC C + F L +H H KP S
Sbjct: 11 KPYQCSECGKSFSGSYRLTQH-WITH-------TREKPSGPS 44
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 4e-08
Identities = 15/25 (60%), Positives = 17/25 (68%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
KP+ CS CGK FTR+ L HQQ H
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQQSH 35
Score = 47.9 bits (115), Expect = 4e-08
Identities = 15/25 (60%), Positives = 17/25 (68%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
KP+ CS CGK FTR+ L HQQ H
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQQSH 35
Score = 31.7 bits (73), Expect = 0.021
Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
KC C K F+R+S L H ++ H
Sbjct: 14 KCSDCGKAFTRKSGLHIH-QQSH 35
Score = 28.2 bits (64), Expect = 0.42
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 8/41 (19%)
Query: 6 PFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 46
P++C C + F RK L H +++H E + S
Sbjct: 12 PYKCSDCGKAFTRKSGLHIH-QQSHT------GE-RHSGPS 44
Score = 28.2 bits (64), Expect = 0.42
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 8/41 (19%)
Query: 114 PFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 154
P++C C + F RK L H +++H E + S
Sbjct: 12 PYKCSDCGKAFTRKSGLHIH-QQSHT------GE-RHSGPS 44
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 4e-08
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
K F C+ CGK FTR+ L HQ+IH
Sbjct: 11 KHFECTECGKAFTRKSTLSMHQKIH 35
Score = 47.9 bits (115), Expect = 4e-08
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
K F C+ CGK FTR+ L HQ+IH
Sbjct: 11 KHFECTECGKAFTRKSTLSMHQKIH 35
Score = 32.5 bits (75), Expect = 0.014
Identities = 9/23 (39%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
+C C K F+R+S L H +++H
Sbjct: 14 ECTECGKAFTRKSTLSMH-QKIH 35
Score = 28.6 bits (65), Expect = 0.26
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 8/42 (19%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 46
+ F+C C + F RK L H ++ H E KP S
Sbjct: 11 KHFECTECGKAFTRKSTLSMH-QKIHT------GE-KPSGPS 44
Score = 28.6 bits (65), Expect = 0.26
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 8/42 (19%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 154
+ F+C C + F RK L H ++ H E KP S
Sbjct: 11 KHFECTECGKAFTRKSTLSMH-QKIHT------GE-KPSGPS 44
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 47.9 bits (115), Expect = 4e-08
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
K + C C F++ LR HQ +H
Sbjct: 11 KTWKCRECDMCFSQASSLRLHQNVH 35
Score = 47.9 bits (115), Expect = 4e-08
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
K + C C F++ LR HQ +H
Sbjct: 11 KTWKCRECDMCFSQASSLRLHQNVH 35
Score = 34.4 bits (80), Expect = 0.002
Identities = 9/23 (39%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
KC C FS+ S L H + +H
Sbjct: 14 KCRECDMCFSQASSLRLH-QNVH 35
Score = 28.7 bits (65), Expect = 0.29
Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 8/42 (19%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 46
+ ++C C+ F + L H + H KP S
Sbjct: 11 KTWKCRECDMCFSQASSLRLH-QNVH-------VGEKPSGPS 44
Score = 28.7 bits (65), Expect = 0.29
Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 8/42 (19%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 154
+ ++C C+ F + L H + H KP S
Sbjct: 11 KTWKCRECDMCFSQASSLRLH-QNVH-------VGEKPSGPS 44
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 5e-08
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
KPF C CGK++ +R HL +HQ++H
Sbjct: 11 KPFKCGECGKSYNQRVHLTQHQRVH 35
Score = 47.9 bits (115), Expect = 5e-08
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
KPF C CGK++ +R HL +HQ++H
Sbjct: 11 KPFKCGECGKSYNQRVHLTQHQRVH 35
Score = 35.2 bits (82), Expect = 0.001
Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
KC C K +++R HL +H +R+H
Sbjct: 14 KCGECGKSYNQRVHLTQH-QRVH 35
Score = 31.3 bits (72), Expect = 0.038
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 8/42 (19%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 46
+PF+C C + + ++ HL +H +R H E KP S
Sbjct: 11 KPFKCGECGKSYNQRVHLTQH-QRVHT------GE-KPSGPS 44
Score = 31.3 bits (72), Expect = 0.038
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 8/42 (19%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 154
+PF+C C + + ++ HL +H +R H E KP S
Sbjct: 11 KPFKCGECGKSYNQRVHLTQH-QRVHT------GE-KPSGPS 44
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 5e-08
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
KPF C CGK FT+ L HQ++H
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVH 35
Score = 47.9 bits (115), Expect = 5e-08
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
KPF C CGK FT+ L HQ++H
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVH 35
Score = 34.8 bits (81), Expect = 0.002
Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
KC+ C K F++ S L H +R+H
Sbjct: 14 KCEECGKRFTQNSQLHSH-QRVH 35
Score = 30.2 bits (69), Expect = 0.087
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 8/42 (19%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 46
+PF+C+ C + F + L H +R H E KP S
Sbjct: 11 KPFKCEECGKRFTQNSQLHSH-QRVHT------GE-KPSGPS 44
Score = 30.2 bits (69), Expect = 0.087
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 8/42 (19%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 154
+PF+C+ C + F + L H +R H E KP S
Sbjct: 11 KPFKCEECGKRFTQNSQLHSH-QRVHT------GE-KPSGPS 44
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 47.9 bits (114), Expect = 5e-08
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARELLQSS 73
PF CS C + FT+R +L +H++ HAR+ SS
Sbjct: 11 NPFKCSKCDRVFTQRNYLVQHERTHARKSGPSS 43
Score = 47.9 bits (114), Expect = 5e-08
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARELLQSS 181
PF CS C + FT+R +L +H++ HAR+ SS
Sbjct: 11 NPFKCSKCDRVFTQRNYLVQHERTHARKSGPSS 43
Score = 37.5 bits (87), Expect = 2e-04
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLHNIDPPPSS 319
KC C +VF++R++L++H +R H PSS
Sbjct: 14 KCSKCDRVFTQRNYLVQH-ERTHARKSGPSS 43
Score = 34.1 bits (78), Expect = 0.003
Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGA 38
PF+C C++ F ++ +LV+H R H +
Sbjct: 11 NPFKCSKCDRVFTQRNYLVQHE-RTHARKSGPSS 43
Score = 34.1 bits (78), Expect = 0.003
Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGA 146
PF+C C++ F ++ +LV+H R H +
Sbjct: 11 NPFKCSKCDRVFTQRNYLVQHE-RTHARKSGPSS 43
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 5e-08
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
KP+ C+ CGK FT+ HL RH+ IH E
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGE 38
Score = 47.9 bits (115), Expect = 5e-08
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
KP+ C+ CGK FT+ HL RH+ IH E
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGE 38
Score = 36.3 bits (85), Expect = 5e-04
Identities = 12/23 (52%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
KC+ C KVF++ SHL RH + +H
Sbjct: 14 KCNECGKVFTQNSHLARH-RGIH 35
Score = 30.2 bits (69), Expect = 0.084
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 8/42 (19%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 46
+P++C+ C + F + HL RH + H KP S
Sbjct: 11 KPYKCNECGKVFTQNSHLARH-RGIH-------TGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.084
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 8/42 (19%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 154
+P++C+ C + F + HL RH + H KP S
Sbjct: 11 KPYKCNECGKVFTQNSHLARH-RGIH-------TGEKPSGPS 44
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 5e-08
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
KP+ C CGK + RR L HQ++H
Sbjct: 11 KPYKCVECGKGYKRRLDLDFHQRVH 35
Score = 47.5 bits (114), Expect = 5e-08
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
KP+ C CGK + RR L HQ++H
Sbjct: 11 KPYKCVECGKGYKRRLDLDFHQRVH 35
Score = 34.0 bits (79), Expect = 0.004
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
KC C K + RR L H +R+H
Sbjct: 14 KCVECGKGYKRRLDLDFH-QRVH 35
Score = 30.2 bits (69), Expect = 0.073
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 8/42 (19%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 46
+P++C C +G+ R+ L H+ R H E K S
Sbjct: 11 KPYKCVECGKGYKRRLDLDFHQ-RVHT------GE-KLSGPS 44
Score = 30.2 bits (69), Expect = 0.073
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 8/42 (19%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 154
+P++C C +G+ R+ L H+ R H E K S
Sbjct: 11 KPYKCVECGKGYKRRLDLDFHQ-RVHT------GE-KLSGPS 44
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 47.6 bits (114), Expect = 5e-08
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
KP C+ CGK F + L HQ+ H +
Sbjct: 11 KPCKCTECGKAFCWKSQLIMHQRTHVDD 38
Score = 47.6 bits (114), Expect = 5e-08
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
KP C+ CGK F + L HQ+ H +
Sbjct: 11 KPCKCTECGKAFCWKSQLIMHQRTHVDD 38
Score = 32.9 bits (76), Expect = 0.008
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
KC C K F +S L+ H +R H
Sbjct: 14 KCTECGKAFCWKSQLIMH-QRTH 35
Score = 31.0 bits (71), Expect = 0.049
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 8/42 (19%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 46
+P +C C + F K L+ H +R H + K S
Sbjct: 11 KPCKCTECGKAFCWKSQLIMH-QRTH-------VDDKHSGPS 44
Score = 31.0 bits (71), Expect = 0.049
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 8/42 (19%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 154
+P +C C + F K L+ H +R H + K S
Sbjct: 11 KPCKCTECGKAFCWKSQLIMH-QRTH-------VDDKHSGPS 44
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 6e-08
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
KP+ C+ CGK FT R +L HQ+IH
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIH 35
Score = 47.5 bits (114), Expect = 6e-08
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
KP+ C+ CGK FT R +L HQ+IH
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIH 35
Score = 33.3 bits (77), Expect = 0.007
Identities = 9/23 (39%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
+C C K F+ RS+L H +++H
Sbjct: 14 RCAECGKAFTDRSNLFTH-QKIH 35
Score = 28.2 bits (64), Expect = 0.41
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 8/42 (19%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 46
+P++C C + F + +L H ++ H E KP S
Sbjct: 11 KPYRCAECGKAFTDRSNLFTH-QKIHT------GE-KPSGPS 44
Score = 28.2 bits (64), Expect = 0.41
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 8/42 (19%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 154
+P++C C + F + +L H ++ H E KP S
Sbjct: 11 KPYRCAECGKAFTDRSNLFTH-QKIHT------GE-KPSGPS 44
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 6e-08
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
KP+ C VCGK F HL +H +H+ E
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQHHSVHSGE 38
Score = 47.5 bits (114), Expect = 6e-08
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
KP+ C VCGK F HL +H +H+ E
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQHHSVHSGE 38
Score = 36.3 bits (85), Expect = 5e-04
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
KC VC K F SHL++H +H
Sbjct: 14 KCQVCGKAFRVSSHLVQH-HSVH 35
Score = 31.7 bits (73), Expect = 0.025
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 8/42 (19%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 46
+P++C VC + F HLV+H H E +P S
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQH-HSVHS------GE-RPSGPS 44
Score = 31.7 bits (73), Expect = 0.025
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 8/42 (19%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 154
+P++C VC + F HLV+H H E +P S
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQH-HSVHS------GE-RPSGPS 44
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 47.5 bits (114), Expect = 6e-08
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
KPF C CGK F+RR L H ++H E
Sbjct: 11 KPFKCVECGKGFSRRSALNVHHKLHTGE 38
Score = 47.5 bits (114), Expect = 6e-08
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
KPF C CGK F+RR L H ++H E
Sbjct: 11 KPFKCVECGKGFSRRSALNVHHKLHTGE 38
Score = 33.6 bits (78), Expect = 0.005
Identities = 13/23 (56%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
KC C K FSRRS L H +LH
Sbjct: 14 KCVECGKGFSRRSALNVH-HKLH 35
Score = 29.4 bits (67), Expect = 0.15
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 8/42 (19%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 46
+PF+C C +GF R+ L H + H E KP S
Sbjct: 11 KPFKCVECGKGFSRRSALNVHH-KLHT------GE-KPSGPS 44
Score = 29.4 bits (67), Expect = 0.15
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 8/42 (19%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 154
+PF+C C +GF R+ L H + H E KP S
Sbjct: 11 KPFKCVECGKGFSRRSALNVHH-KLHT------GE-KPSGPS 44
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 6e-08
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
KP+ C+ CGK FT+ HL RH+ IH E
Sbjct: 11 KPYKCNECGKVFTQNSHLVRHRGIHTGE 38
Score = 47.5 bits (114), Expect = 6e-08
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
KP+ C+ CGK FT+ HL RH+ IH E
Sbjct: 11 KPYKCNECGKVFTQNSHLVRHRGIHTGE 38
Score = 36.3 bits (85), Expect = 6e-04
Identities = 12/23 (52%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
KC+ C KVF++ SHL+RH + +H
Sbjct: 14 KCNECGKVFTQNSHLVRH-RGIH 35
Score = 30.1 bits (69), Expect = 0.085
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 8/42 (19%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 46
+P++C+ C + F + HLVRH + H E KP S
Sbjct: 11 KPYKCNECGKVFTQNSHLVRH-RGIHT------GE-KPSGPS 44
Score = 30.1 bits (69), Expect = 0.085
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 8/42 (19%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 154
+P++C+ C + F + HLVRH + H E KP S
Sbjct: 11 KPYKCNECGKVFTQNSHLVRH-RGIHT------GE-KPSGPS 44
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 6e-08
Identities = 14/25 (56%), Positives = 20/25 (80%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
+P+ C+VCGK FT R +L +HQ+IH
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIH 35
Score = 47.5 bits (114), Expect = 6e-08
Identities = 14/25 (56%), Positives = 20/25 (80%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
+P+ C+VCGK FT R +L +HQ+IH
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIH 35
Score = 34.0 bits (79), Expect = 0.004
Identities = 10/23 (43%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
C VC K F+ RS+L++H +++H
Sbjct: 14 ICTVCGKAFTDRSNLIKH-QKIH 35
Score = 29.4 bits (67), Expect = 0.16
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 8/42 (19%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 46
RP+ C VC + F + +L++H+ + H E KP S
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQ-KIHT------GE-KPSGPS 44
Score = 29.4 bits (67), Expect = 0.16
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 8/42 (19%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 154
RP+ C VC + F + +L++H+ + H E KP S
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQ-KIHT------GE-KPSGPS 44
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 6e-08
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
KP+ C+ CGK FT+ HL RH+ IH E
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGE 38
Score = 47.5 bits (114), Expect = 6e-08
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
KP+ C+ CGK FT+ HL RH+ IH E
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGE 38
Score = 36.3 bits (85), Expect = 5e-04
Identities = 12/23 (52%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
KC+ C KVF++ SHL RH + +H
Sbjct: 14 KCNECGKVFTQNSHLARH-RGIH 35
Score = 30.2 bits (69), Expect = 0.10
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 8/42 (19%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 46
+P++C+ C + F + HL RH + H KP S
Sbjct: 11 KPYKCNECGKVFTQNSHLARH-RGIH-------TGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.10
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 8/42 (19%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 154
+P++C+ C + F + HL RH + H KP S
Sbjct: 11 KPYKCNECGKVFTQNSHLARH-RGIH-------TGEKPSGPS 44
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.1 bits (113), Expect = 7e-08
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
KP+ CS CGK+FT + LR HQ+ H
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIHQKCH 35
Score = 47.1 bits (113), Expect = 7e-08
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
KP+ CS CGK+FT + LR HQ+ H
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIHQKCH 35
Score = 31.4 bits (72), Expect = 0.030
Identities = 9/23 (39%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
KC C K F+ +S L H ++ H
Sbjct: 14 KCSDCGKSFTWKSRLRIH-QKCH 35
Score = 27.9 bits (63), Expect = 0.55
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 8/42 (19%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 46
+P++C C + F K L H ++ H E + S
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIH-QKCHT------GE-RHSGPS 44
Score = 27.9 bits (63), Expect = 0.55
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 8/42 (19%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 154
+P++C C + F K L H ++ H E + S
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIH-QKCHT------GE-RHSGPS 44
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 49.9 bits (118), Expect = 7e-08
Identities = 24/122 (19%), Positives = 37/122 (30%), Gaps = 22/122 (18%)
Query: 48 CGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQRIE 107
T E R HQ ++ L ++ + + P LDE+ R+
Sbjct: 20 IFIHVTLEELKRYHQLTPEQKRLIRAIVKTLI--------HNPQLLDESSYL----YRLL 67
Query: 108 GIDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLR 167
+ F C +C F L +H + C VC K FT +
Sbjct: 68 ASKAISQFVCPLCLMPFSSSVSLKQHIRYTE----------HTKVCPVCKKEFTSTDSAL 117
Query: 168 RH 169
H
Sbjct: 118 DH 119
Score = 45.3 bits (106), Expect = 3e-06
Identities = 13/59 (22%), Positives = 18/59 (30%), Gaps = 10/59 (16%)
Query: 3 VVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRH 61
+ F C +C F L +H + C VC K FT + H
Sbjct: 71 AISQFVCPLCLMPFSSSVSLKQHIRYTE----------HTKVCPVCKKEFTSTDSALDH 119
Score = 35.3 bits (80), Expect = 0.008
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
F C +C F+ L++H +
Sbjct: 73 SQFVCPLCLMPFSSSVSLKQHIRYTEHT 100
Score = 35.3 bits (80), Expect = 0.008
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
F C +C F+ L++H +
Sbjct: 73 SQFVCPLCLMPFSSSVSLKQHIRYTEHT 100
Score = 33.0 bits (74), Expect = 0.042
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLHNI 313
C VCKK F+ L H+ + HNI
Sbjct: 102 VCPVCKKEFTSTDSALDHVCKKHNI 126
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 47.1 bits (113), Expect = 7e-08
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
P+ C CGK F+R++ L HQ+ H+ +
Sbjct: 11 NPYECCECGKVFSRKDQLVSHQKTHSGQ 38
Score = 47.1 bits (113), Expect = 7e-08
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
P+ C CGK F+R++ L HQ+ H+ +
Sbjct: 11 NPYECCECGKVFSRKDQLVSHQKTHSGQ 38
Score = 35.9 bits (84), Expect = 7e-04
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLHNIDPPPSS 319
+C C KVFSR+ L+ H ++ H+ PSS
Sbjct: 14 ECCECGKVFSRKDQLVSH-QKTHSGQSGPSS 43
Score = 29.0 bits (66), Expect = 0.24
Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAH 30
P++C C + F RK+ LV H+ + H
Sbjct: 11 NPYECCECGKVFSRKDQLVSHQ-KTH 35
Score = 29.0 bits (66), Expect = 0.24
Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAH 138
P++C C + F RK+ LV H+ + H
Sbjct: 11 NPYECCECGKVFSRKDQLVSHQ-KTH 35
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.1 bits (113), Expect = 7e-08
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
KP+ C+ CGK FT+ HL HQ+IH
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRIH 35
Score = 47.1 bits (113), Expect = 7e-08
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
KP+ C+ CGK FT+ HL HQ+IH
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRIH 35
Score = 35.6 bits (83), Expect = 0.001
Identities = 12/23 (52%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
KC+ C KVF++ SHL H +R+H
Sbjct: 14 KCNECGKVFTQNSHLANH-QRIH 35
Score = 30.2 bits (69), Expect = 0.087
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 8/42 (19%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 46
+P++C+ C + F + HL H +R H KP S
Sbjct: 11 KPYKCNECGKVFTQNSHLANH-QRIHT------GV-KPSGPS 44
Score = 30.2 bits (69), Expect = 0.087
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 8/42 (19%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 154
+P++C+ C + F + HL H +R H KP S
Sbjct: 11 KPYKCNECGKVFTQNSHLANH-QRIHT------GV-KPSGPS 44
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.1 bits (113), Expect = 7e-08
Identities = 14/28 (50%), Positives = 21/28 (75%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
KP+ C+ CGK FT R +L +HQ+IH ++
Sbjct: 11 KPYICAECGKAFTIRSNLIKHQKIHTKQ 38
Score = 47.1 bits (113), Expect = 7e-08
Identities = 14/28 (50%), Positives = 21/28 (75%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
KP+ C+ CGK FT R +L +HQ+IH ++
Sbjct: 11 KPYICAECGKAFTIRSNLIKHQKIHTKQ 38
Score = 33.3 bits (77), Expect = 0.006
Identities = 9/23 (39%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
C C K F+ RS+L++H +++H
Sbjct: 14 ICAECGKAFTIRSNLIKH-QKIH 35
Score = 28.6 bits (65), Expect = 0.35
Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 8/42 (19%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 46
+P+ C C + F + +L++H+ + H + KP S
Sbjct: 11 KPYICAECGKAFTIRSNLIKHQ-KIHT------KQ-KPSGPS 44
Score = 28.6 bits (65), Expect = 0.35
Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 8/42 (19%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 154
+P+ C C + F + +L++H+ + H + KP S
Sbjct: 11 KPYICAECGKAFTIRSNLIKHQ-KIHT------KQ-KPSGPS 44
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.1 bits (113), Expect = 7e-08
Identities = 15/25 (60%), Positives = 20/25 (80%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
KP+ CS+CGK+FT++ L HQQIH
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIH 35
Score = 47.1 bits (113), Expect = 7e-08
Identities = 15/25 (60%), Positives = 20/25 (80%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
KP+ CS+CGK+FT++ L HQQIH
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIH 35
Score = 31.7 bits (73), Expect = 0.022
Identities = 8/23 (34%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
+C +C K F+++S L H +++H
Sbjct: 14 ECSICGKSFTKKSQLHVH-QQIH 35
Score = 27.9 bits (63), Expect = 0.65
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 8/42 (19%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 46
+P++C +C + F +K L H ++ H E KP S
Sbjct: 11 KPYECSICGKSFTKKSQLHVH-QQIHT------GE-KPSGPS 44
Score = 27.9 bits (63), Expect = 0.65
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 8/42 (19%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 154
+P++C +C + F +K L H ++ H E KP S
Sbjct: 11 KPYECSICGKSFTKKSQLHVH-QQIHT------GE-KPSGPS 44
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.1 bits (113), Expect = 8e-08
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
KP+ CS CGK F R HL H++IH
Sbjct: 11 KPYKCSECGKAFHRHTHLNEHRRIHTGY 38
Score = 47.1 bits (113), Expect = 8e-08
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
KP+ CS CGK F R HL H++IH
Sbjct: 11 KPYKCSECGKAFHRHTHLNEHRRIHTGY 38
Score = 36.3 bits (85), Expect = 6e-04
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
KC C K F R +HL H +R+H
Sbjct: 14 KCSECGKAFHRHTHLNEH-RRIH 35
Score = 30.9 bits (71), Expect = 0.051
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 8/42 (19%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 46
+P++C C + F R HL H +R H +P S
Sbjct: 11 KPYKCSECGKAFHRHTHLNEH-RRIH-------TGYRPSGPS 44
Score = 30.9 bits (71), Expect = 0.051
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 8/42 (19%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 154
+P++C C + F R HL H +R H +P S
Sbjct: 11 KPYKCSECGKAFHRHTHLNEH-RRIH-------TGYRPSGPS 44
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 46.9 bits (112), Expect = 8e-08
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
+ F C VC + F R+EHL+RH + H E
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNE 28
Score = 46.9 bits (112), Expect = 8e-08
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
+ F C VC + F R+EHL+RH + H E
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNE 28
Score = 40.0 bits (94), Expect = 2e-05
Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAH 30
R F C+VC + F R+EHL RH R+H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRH-YRSH 25
Score = 40.0 bits (94), Expect = 2e-05
Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAH 138
R F C+VC + F R+EHL RH R+H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRH-YRSH 25
Score = 30.7 bits (70), Expect = 0.039
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
C+VC + F+R+ HL RH R H
Sbjct: 4 VCEVCTRAFARQEHLKRHY-RSH 25
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 45
Score = 47.2 bits (113), Expect = 8e-08
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
KPF C+ CGK+F + +L HQ+IH
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQRIH 35
Score = 47.2 bits (113), Expect = 8e-08
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
KPF C+ CGK+F + +L HQ+IH
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQRIH 35
Score = 31.4 bits (72), Expect = 0.027
Identities = 8/23 (34%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
+C C K F + +L+ H +R+H
Sbjct: 14 ECTHCGKSFRAKGNLVTH-QRIH 35
Score = 30.2 bits (69), Expect = 0.079
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 8/42 (19%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 46
+PF+C C + F K +LV H+ R H E K S
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQ-RIHT------GE-KSGPSS 44
Score = 30.2 bits (69), Expect = 0.079
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 8/42 (19%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 154
+PF+C C + F K +LV H+ R H E K S
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQ-RIHT------GE-KSGPSS 44
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.1 bits (113), Expect = 8e-08
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
KP+ C+ CGK FT+ HL RH+++H
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRVH 35
Score = 47.1 bits (113), Expect = 8e-08
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
KP+ C+ CGK FT+ HL RH+++H
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRVH 35
Score = 36.7 bits (86), Expect = 4e-04
Identities = 13/23 (56%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
KC+ C KVF++ SHL RH +R+H
Sbjct: 14 KCNECGKVFTQNSHLARH-RRVH 35
Score = 31.0 bits (71), Expect = 0.052
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 8/42 (19%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 46
+P++C+ C + F + HL RHR R H KP S
Sbjct: 11 KPYKCNECGKVFTQNSHLARHR-RVHT------GG-KPSGPS 44
Score = 31.0 bits (71), Expect = 0.052
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 8/42 (19%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 154
+P++C+ C + F + HL RHR R H KP S
Sbjct: 11 KPYKCNECGKVFTQNSHLARHR-RVHT------GG-KPSGPS 44
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 46.8 bits (112), Expect = 8e-08
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
+ + C CGK+F ++ L H++IH
Sbjct: 9 RVYECQECGKSFRQKGSLTLHERIH 33
Score = 46.8 bits (112), Expect = 8e-08
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
+ + C CGK+F ++ L H++IH
Sbjct: 9 RVYECQECGKSFRQKGSLTLHERIH 33
Score = 31.8 bits (73), Expect = 0.019
Identities = 8/23 (34%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
+C C K F ++ L H +R+H
Sbjct: 12 ECQECGKSFRQKGSLTLH-ERIH 33
Score = 28.3 bits (64), Expect = 0.39
Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAH 30
R ++C C + F +K L H +R H
Sbjct: 9 RVYECQECGKSFRQKGSLTLH-ERIH 33
Score = 28.3 bits (64), Expect = 0.39
Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAH 138
R ++C C + F +K L H +R H
Sbjct: 9 RVYECQECGKSFRQKGSLTLH-ERIH 33
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 47.1 bits (113), Expect = 9e-08
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
KP+ C CGK F++ HL +HQ++H E
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQRVHTGE 38
Score = 47.1 bits (113), Expect = 9e-08
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
KP+ C CGK F++ HL +HQ++H E
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQRVHTGE 38
Score = 34.0 bits (79), Expect = 0.004
Identities = 10/23 (43%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
+C C K FS+ +HL++H +R+H
Sbjct: 14 ECKECGKAFSQTTHLIQH-QRVH 35
Score = 29.4 bits (67), Expect = 0.15
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 8/42 (19%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 46
+P++C C + F + HL++H+ R H KP S
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQ-RVH-------TGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.15
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 8/42 (19%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 154
+P++C C + F + HL++H+ R H KP S
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQ-RVH-------TGEKPSGPS 44
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.8 bits (112), Expect = 1e-07
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
K + C VCGK F++ HL+ HQ++H
Sbjct: 11 KCYKCDVCGKEFSQSSHLQTHQRVH 35
Score = 46.8 bits (112), Expect = 1e-07
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
K + C VCGK F++ HL+ HQ++H
Sbjct: 11 KCYKCDVCGKEFSQSSHLQTHQRVH 35
Score = 37.9 bits (89), Expect = 2e-04
Identities = 14/23 (60%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
KCDVC K FS+ SHL H +R+H
Sbjct: 14 KCDVCGKEFSQSSHLQTH-QRVH 35
Score = 32.9 bits (76), Expect = 0.008
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 8/42 (19%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 46
+ ++CDVC + F + HL H +R H E KP S
Sbjct: 11 KCYKCDVCGKEFSQSSHLQTH-QRVHT------GE-KPSGPS 44
Score = 32.9 bits (76), Expect = 0.008
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 8/42 (19%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 154
+ ++CDVC + F + HL H +R H E KP S
Sbjct: 11 KCYKCDVCGKEFSQSSHLQTH-QRVHT------GE-KPSGPS 44
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 46.7 bits (112), Expect = 1e-07
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
KP+ C CGK F ++ +L +HQ+IH
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIH 35
Score = 46.7 bits (112), Expect = 1e-07
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
KP+ C CGK F ++ +L +HQ+IH
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIH 35
Score = 34.0 bits (79), Expect = 0.003
Identities = 8/23 (34%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
+C C K F+++++L +H +R+H
Sbjct: 14 RCGECGKAFAQKANLTQH-QRIH 35
Score = 29.8 bits (68), Expect = 0.13
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 8/42 (19%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 46
+P++C C + F +K +L +H +R H E KP S
Sbjct: 11 KPYRCGECGKAFAQKANLTQH-QRIHT------GE-KPSGPS 44
Score = 29.8 bits (68), Expect = 0.13
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 8/42 (19%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 154
+P++C C + F +K +L +H +R H E KP S
Sbjct: 11 KPYRCGECGKAFAQKANLTQH-QRIHT------GE-KPSGPS 44
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 46.8 bits (112), Expect = 1e-07
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
KPF C CG F+ L +H + H R
Sbjct: 11 KPFQCKECGMNFSWSCSLFKHLRSHERT 38
Score = 46.8 bits (112), Expect = 1e-07
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
KPF C CG F+ L +H + H R
Sbjct: 11 KPFQCKECGMNFSWSCSLFKHLRSHERT 38
Score = 30.6 bits (70), Expect = 0.063
Identities = 9/23 (39%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
+C C FS L +HL R H
Sbjct: 14 QCKECGMNFSWSCSLFKHL-RSH 35
Score = 29.9 bits (68), Expect = 0.12
Identities = 12/42 (28%), Positives = 15/42 (35%), Gaps = 8/42 (19%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 46
+PFQC C F L +H R+H P S
Sbjct: 11 KPFQCKECGMNFSWSCSLFKH-LRSH-------ERTDPSGPS 44
Score = 29.9 bits (68), Expect = 0.12
Identities = 12/42 (28%), Positives = 15/42 (35%), Gaps = 8/42 (19%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 154
+PFQC C F L +H R+H P S
Sbjct: 11 KPFQCKECGMNFSWSCSLFKH-LRSH-------ERTDPSGPS 44
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.7 bits (112), Expect = 1e-07
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
KP+ C+ CGK F +L RHQ+IH
Sbjct: 11 KPYKCNECGKVFRHNSYLSRHQRIH 35
Score = 46.7 bits (112), Expect = 1e-07
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
KP+ C+ CGK F +L RHQ+IH
Sbjct: 11 KPYKCNECGKVFRHNSYLSRHQRIH 35
Score = 35.2 bits (82), Expect = 0.001
Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
KC+ C KVF S+L RH +R+H
Sbjct: 14 KCNECGKVFRHNSYLSRH-QRIH 35
Score = 29.0 bits (66), Expect = 0.19
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 8/42 (19%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 46
+P++C+ C + F +L RH +R H E KP S
Sbjct: 11 KPYKCNECGKVFRHNSYLSRH-QRIHT------GE-KPSGPS 44
Score = 29.0 bits (66), Expect = 0.19
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 8/42 (19%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 154
+P++C+ C + F +L RH +R H E KP S
Sbjct: 11 KPYKCNECGKVFRHNSYLSRH-QRIHT------GE-KPSGPS 44
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.7 bits (112), Expect = 1e-07
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
KPF CS C K F + +L HQ+ H E
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRTHTGE 38
Score = 46.7 bits (112), Expect = 1e-07
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
KPF CS C K F + +L HQ+ H E
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRTHTGE 38
Score = 31.3 bits (72), Expect = 0.033
Identities = 9/23 (39%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
+C C+K F+ +S+L+ H +R H
Sbjct: 14 ECSECQKAFNTKSNLIVH-QRTH 35
Score = 30.5 bits (70), Expect = 0.073
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 8/42 (19%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 46
+PF+C C + F K +L+ H+ R H E KP S
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQ-RTHT------GE-KPSGPS 44
Score = 30.5 bits (70), Expect = 0.073
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 8/42 (19%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 154
+PF+C C + F K +L+ H+ R H E KP S
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQ-RTHT------GE-KPSGPS 44
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.7 bits (112), Expect = 1e-07
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
KP+ C+ CGK FT+ HL H +IH
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIH 35
Score = 46.7 bits (112), Expect = 1e-07
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
KP+ C+ CGK FT+ HL H +IH
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIH 35
Score = 35.9 bits (84), Expect = 7e-04
Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
KC+ C KVF++ SHL H R+H
Sbjct: 14 KCNECGKVFTQNSHLTNH-WRIH 35
Score = 30.2 bits (69), Expect = 0.075
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 8/42 (19%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 46
+P++C+ C + F + HL H R H KP S
Sbjct: 11 KPYKCNECGKVFTQNSHLTNH-WRIH-------TGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.075
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 8/42 (19%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 154
+P++C+ C + F + HL H R H KP S
Sbjct: 11 KPYKCNECGKVFTQNSHLTNH-WRIH-------TGEKPSGPS 44
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 46.3 bits (111), Expect = 1e-07
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
KPF C+ CGK+F+ L HQ+IH
Sbjct: 11 KPFECAECGKSFSISSQLATHQRIH 35
Score = 46.3 bits (111), Expect = 1e-07
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
KPF C+ CGK+F+ L HQ+IH
Sbjct: 11 KPFECAECGKSFSISSQLATHQRIH 35
Score = 31.7 bits (73), Expect = 0.021
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
+C C K FS S L H +R+H
Sbjct: 14 ECAECGKSFSISSQLATH-QRIH 35
Score = 28.6 bits (65), Expect = 0.33
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 8/42 (19%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 46
+PF+C C + F L H +R H E KP S
Sbjct: 11 KPFECAECGKSFSISSQLATH-QRIHT------GE-KPSGPS 44
Score = 28.6 bits (65), Expect = 0.33
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 8/42 (19%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 154
+PF+C C + F L H +R H E KP S
Sbjct: 11 KPFECAECGKSFSISSQLATH-QRIHT------GE-KPSGPS 44
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 46.3 bits (111), Expect = 1e-07
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
+P C+ CGK+F + HL +HQ+IH E
Sbjct: 11 RPHKCNECGKSFIQSAHLIQHQRIHTGE 38
Score = 46.3 bits (111), Expect = 1e-07
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
+P C+ CGK+F + HL +HQ+IH E
Sbjct: 11 RPHKCNECGKSFIQSAHLIQHQRIHTGE 38
Score = 34.4 bits (80), Expect = 0.003
Identities = 10/23 (43%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
KC+ C K F + +HL++H +R+H
Sbjct: 14 KCNECGKSFIQSAHLIQH-QRIH 35
Score = 31.7 bits (73), Expect = 0.026
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 8/42 (19%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 46
RP +C+ C + F++ HL++H+ R H E KP S
Sbjct: 11 RPHKCNECGKSFIQSAHLIQHQ-RIHT------GE-KPSGPS 44
Score = 31.7 bits (73), Expect = 0.026
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 8/42 (19%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 154
RP +C+ C + F++ HL++H+ R H E KP S
Sbjct: 11 RPHKCNECGKSFIQSAHLIQHQ-RIHT------GE-KPSGPS 44
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.4 bits (111), Expect = 2e-07
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
KP+ CS CGK+F ++ L HQ+IH
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRIH 35
Score = 46.4 bits (111), Expect = 2e-07
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
KP+ CS CGK+F ++ L HQ+IH
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRIH 35
Score = 30.6 bits (70), Expect = 0.053
Identities = 9/23 (39%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
+C C K F ++S L H +R+H
Sbjct: 14 ECSDCGKSFIKKSQLHVH-QRIH 35
Score = 29.0 bits (66), Expect = 0.23
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 8/42 (19%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 46
+P++C C + F++K L H+ R H E P S
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQ-RIHT------GE-NPSGPS 44
Score = 29.0 bits (66), Expect = 0.23
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 8/42 (19%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 154
+P++C C + F++K L H+ R H E P S
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQ-RIHT------GE-NPSGPS 44
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 46.0 bits (110), Expect = 2e-07
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
K ++C CGK+F+R L +H+++H+ E
Sbjct: 11 KLYNCKECGKSFSRAPCLLKHERLHSGE 38
Score = 46.0 bits (110), Expect = 2e-07
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
K ++C CGK+F+R L +H+++H+ E
Sbjct: 11 KLYNCKECGKSFSRAPCLLKHERLHSGE 38
Score = 34.0 bits (79), Expect = 0.004
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
C C K FSR LL+H +RLH
Sbjct: 14 NCKECGKSFSRAPCLLKH-ERLH 35
Score = 29.8 bits (68), Expect = 0.10
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 8/42 (19%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 46
+ + C C + F R L++H +R H E KP S
Sbjct: 11 KLYNCKECGKSFSRAPCLLKH-ERLHS------GE-KPSGPS 44
Score = 29.8 bits (68), Expect = 0.10
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 8/42 (19%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 154
+ + C C + F R L++H +R H E KP S
Sbjct: 11 KLYNCKECGKSFSRAPCLLKH-ERLHS------GE-KPSGPS 44
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.0 bits (110), Expect = 2e-07
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
K F C+ C KTFT+ L HQ+IH
Sbjct: 11 KLFKCNECKKTFTQSSSLTVHQRIH 35
Score = 46.0 bits (110), Expect = 2e-07
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
K F C+ C KTFT+ L HQ+IH
Sbjct: 11 KLFKCNECKKTFTQSSSLTVHQRIH 35
Score = 34.0 bits (79), Expect = 0.003
Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
KC+ CKK F++ S L H +R+H
Sbjct: 14 KCNECKKTFTQSSSLTVH-QRIH 35
Score = 27.9 bits (63), Expect = 0.54
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 8/42 (19%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 46
+ F+C+ C + F + L H+ R H E KP S
Sbjct: 11 KLFKCNECKKTFTQSSSLTVHQ-RIHT------GE-KPSGPS 44
Score = 27.9 bits (63), Expect = 0.54
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 8/42 (19%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 154
+ F+C+ C + F + L H+ R H E KP S
Sbjct: 11 KLFKCNECKKTFTQSSSLTVHQ-RIHT------GE-KPSGPS 44
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.0 bits (110), Expect = 2e-07
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
KP+ C+ CGKTF+++ L HQ+ H E
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGE 38
Score = 46.0 bits (110), Expect = 2e-07
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
KP+ C+ CGKTF+++ L HQ+ H E
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGE 38
Score = 33.3 bits (77), Expect = 0.007
Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
C+ C K FS++S L H +R H
Sbjct: 14 GCNECGKTFSQKSILSAH-QRTH 35
Score = 28.7 bits (65), Expect = 0.32
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 8/42 (19%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 46
+P+ C+ C + F +K L H +R H E KP S
Sbjct: 11 KPYGCNECGKTFSQKSILSAH-QRTHT------GE-KPSGPS 44
Score = 28.7 bits (65), Expect = 0.32
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 8/42 (19%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 154
+P+ C+ C + F +K L H +R H E KP S
Sbjct: 11 KPYGCNECGKTFSQKSILSAH-QRTHT------GE-KPSGPS 44
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.0 bits (110), Expect = 2e-07
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
+ + CS CGK F R+ L HQ+IH E
Sbjct: 11 RHYECSECGKAFARKSTLIMHQRIHTGE 38
Score = 46.0 bits (110), Expect = 2e-07
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
+ + CS CGK F R+ L HQ+IH E
Sbjct: 11 RHYECSECGKAFARKSTLIMHQRIHTGE 38
Score = 30.9 bits (71), Expect = 0.039
Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
+C C K F+R+S L+ H +R+H
Sbjct: 14 ECSECGKAFARKSTLIMH-QRIH 35
Score = 30.2 bits (69), Expect = 0.096
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 8/42 (19%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 46
R ++C C + F RK L+ H+ R H KP S
Sbjct: 11 RHYECSECGKAFARKSTLIMHQ-RIH-------TGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.096
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 8/42 (19%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 154
R ++C C + F RK L+ H+ R H KP S
Sbjct: 11 RHYECSECGKAFARKSTLIMHQ-RIH-------TGEKPSGPS 44
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 46.0 bits (110), Expect = 2e-07
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
KP+ CS C KTF+ + L HQ+ H
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSH 35
Score = 46.0 bits (110), Expect = 2e-07
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
KP+ CS C KTF+ + L HQ+ H
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSH 35
Score = 31.3 bits (72), Expect = 0.030
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
C C K FS +S L+ H +R H
Sbjct: 14 GCSQCAKTFSLKSQLIVH-QRSH 35
Score = 29.0 bits (66), Expect = 0.19
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 9/45 (20%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCG 49
+P+ C C + F K L+ H+ R+H KP S G
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQ-RSHT------GV-KPSGPS-SG 46
Score = 29.0 bits (66), Expect = 0.19
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 9/45 (20%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCG 157
+P+ C C + F K L+ H+ R+H KP S G
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQ-RSHT------GV-KPSGPS-SG 46
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 46.0 bits (110), Expect = 2e-07
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
KPF C CGK F+ L +H++IH E
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQHRRIHTGE 38
Score = 46.0 bits (110), Expect = 2e-07
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
KPF C CGK F+ L +H++IH E
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQHRRIHTGE 38
Score = 34.4 bits (80), Expect = 0.003
Identities = 9/23 (39%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
C C K FS L +H +R+H
Sbjct: 14 DCIDCGKAFSDHIGLNQH-RRIH 35
Score = 29.0 bits (66), Expect = 0.21
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 8/42 (19%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 46
+PF C C + F L +H +R H E KP S
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQH-RRIHT------GE-KPSGPS 44
Score = 29.0 bits (66), Expect = 0.21
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 8/42 (19%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 154
+PF C C + F L +H +R H E KP S
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQH-RRIHT------GE-KPSGPS 44
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.0 bits (110), Expect = 2e-07
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
P+ C CGK F+R+ L HQ+ HA E
Sbjct: 11 NPYECHECGKAFSRKYQLISHQRTHAGE 38
Score = 46.0 bits (110), Expect = 2e-07
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
P+ C CGK F+R+ L HQ+ HA E
Sbjct: 11 NPYECHECGKAFSRKYQLISHQRTHAGE 38
Score = 32.9 bits (76), Expect = 0.010
Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
+C C K FSR+ L+ H +R H
Sbjct: 14 ECHECGKAFSRKYQLISH-QRTH 35
Score = 30.6 bits (70), Expect = 0.070
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 8/42 (19%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 46
P++C C + F RK L+ H+ R H E KP S
Sbjct: 11 NPYECHECGKAFSRKYQLISHQ-RTHA------GE-KPSGPS 44
Score = 30.6 bits (70), Expect = 0.070
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 8/42 (19%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 154
P++C C + F RK L+ H+ R H E KP S
Sbjct: 11 NPYECHECGKAFSRKYQLISHQ-RTHA------GE-KPSGPS 44
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.6 bits (109), Expect = 3e-07
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
+ + CS CGK F ++ L HQ+IH
Sbjct: 11 RHYECSECGKAFIQKSTLSMHQRIH 35
Score = 45.6 bits (109), Expect = 3e-07
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
+ + CS CGK F ++ L HQ+IH
Sbjct: 11 RHYECSECGKAFIQKSTLSMHQRIH 35
Score = 31.3 bits (72), Expect = 0.031
Identities = 9/23 (39%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
+C C K F ++S L H +R+H
Sbjct: 14 ECSECGKAFIQKSTLSMH-QRIH 35
Score = 28.6 bits (65), Expect = 0.26
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 8/42 (19%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 46
R ++C C + F++K L H +R H E KP S
Sbjct: 11 RHYECSECGKAFIQKSTLSMH-QRIHR------GE-KPSGPS 44
Score = 28.6 bits (65), Expect = 0.26
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 8/42 (19%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 154
R ++C C + F++K L H +R H E KP S
Sbjct: 11 RHYECSECGKAFIQKSTLSMH-QRIHR------GE-KPSGPS 44
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.6 bits (109), Expect = 3e-07
Identities = 15/25 (60%), Positives = 19/25 (76%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
KP+ CSVCGK F+ R+ L HQ+IH
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIH 35
Score = 45.6 bits (109), Expect = 3e-07
Identities = 15/25 (60%), Positives = 19/25 (76%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
KP+ CSVCGK F+ R+ L HQ+IH
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIH 35
Score = 32.9 bits (76), Expect = 0.009
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
+C VC K FS R L H +R+H
Sbjct: 14 ECSVCGKAFSHRQSLSVH-QRIH 35
Score = 26.7 bits (60), Expect = 1.6
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 8/42 (19%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 46
+P++C VC + F ++ L H +R H + KP S
Sbjct: 11 KPYECSVCGKAFSHRQSLSVH-QRIHS------GK-KPSGPS 44
Score = 26.7 bits (60), Expect = 1.6
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 8/42 (19%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 154
+P++C VC + F ++ L H +R H + KP S
Sbjct: 11 KPYECSVCGKAFSHRQSLSVH-QRIHS------GK-KPSGPS 44
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 47.8 bits (113), Expect = 3e-07
Identities = 17/105 (16%), Positives = 24/105 (22%), Gaps = 12/105 (11%)
Query: 40 AKPFSCSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRR 99
A F C C + L H + + P L E +
Sbjct: 17 ASKFRCKDCSAAYDTLVELTVHMNETGH--YRDDNHETDNNNPKRWSKPRKRSLLEMEGK 74
Query: 100 WVACQRIEGIDVVRPFQCDVCNQGFVRKEHLVRH-RKRAHDLDPP 143
D + +C C F + L H K H
Sbjct: 75 ---------EDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVS 110
Score = 41.3 bits (96), Expect = 5e-05
Identities = 18/97 (18%), Positives = 28/97 (28%), Gaps = 28/97 (28%)
Query: 5 RPFQCDVCNQGFVRKEHLVRH-------------------------RKRAHDLDPPEGAE 39
F+C C+ + L H RKR+ +
Sbjct: 18 SKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDA 77
Query: 40 AKPFSCSVCGKTFTRREHLRRH--QQIHARE-LLQSS 73
K C CG +F + L H + H ++ SS
Sbjct: 78 QKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVSGPSS 114
Score = 34.4 bits (78), Expect = 0.012
Identities = 6/25 (24%), Positives = 7/25 (28%)
Query: 148 AKPFSCSVCGKTFTRREHLRRHQQI 172
A F C C + L H
Sbjct: 17 ASKFRCKDCSAAYDTLVELTVHMNE 41
Score = 30.1 bits (67), Expect = 0.35
Identities = 8/35 (22%), Positives = 11/35 (31%), Gaps = 1/35 (2%)
Query: 2 DVVRPFQCDVCNQGFVRKEHLVRH-RKRAHDLDPP 35
D + +C C F + L H K H
Sbjct: 76 DAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVS 110
Score = 28.2 bits (62), Expect = 1.8
Identities = 8/38 (21%), Positives = 12/38 (31%), Gaps = 1/38 (2%)
Query: 280 RERPPKPIPKCDVCKKVFSRRSHLLRHL-KRLHNIDPP 316
+ + + KC C F L H+ K H
Sbjct: 73 GKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVS 110
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 45.6 bits (109), Expect = 3e-07
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
+ CS CGK F + + +H++IH
Sbjct: 11 RGHRCSDCGKFFLQASNFIQHRRIH 35
Score = 45.6 bits (109), Expect = 3e-07
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
+ CS CGK F + + +H++IH
Sbjct: 11 RGHRCSDCGKFFLQASNFIQHRRIH 35
Score = 34.4 bits (80), Expect = 0.002
Identities = 8/23 (34%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
+C C K F + S+ ++H +R+H
Sbjct: 14 RCSDCGKFFLQASNFIQH-RRIH 35
Score = 31.0 bits (71), Expect = 0.043
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 8/42 (19%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 46
R +C C + F++ + ++HR R H KP S
Sbjct: 11 RGHRCSDCGKFFLQASNFIQHR-RIH-------TGEKPSGPS 44
Score = 31.0 bits (71), Expect = 0.043
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 8/42 (19%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 154
R +C C + F++ + ++HR R H KP S
Sbjct: 11 RGHRCSDCGKFFLQASNFIQHR-RIH-------TGEKPSGPS 44
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 45.6 bits (109), Expect = 3e-07
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
P+ CS CGK F R++ L HQ+ HA E
Sbjct: 9 NPYECSECGKAFNRKDQLISHQRTHAGE 36
Score = 45.6 bits (109), Expect = 3e-07
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
P+ CS CGK F R++ L HQ+ HA E
Sbjct: 9 NPYECSECGKAFNRKDQLISHQRTHAGE 36
Score = 32.5 bits (75), Expect = 0.012
Identities = 9/23 (39%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
+C C K F+R+ L+ H +R H
Sbjct: 12 ECSECGKAFNRKDQLISH-QRTH 33
Score = 29.0 bits (66), Expect = 0.20
Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAH 30
P++C C + F RK+ L+ H+ R H
Sbjct: 9 NPYECSECGKAFNRKDQLISHQ-RTH 33
Score = 29.0 bits (66), Expect = 0.20
Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAH 138
P++C C + F RK+ L+ H+ R H
Sbjct: 9 NPYECSECGKAFNRKDQLISHQ-RTH 33
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 51.4 bits (122), Expect = 3e-07
Identities = 64/381 (16%), Positives = 119/381 (31%), Gaps = 102/381 (26%)
Query: 1 IDVVR--PFQCDVCNQGF---VRKEH-----LVRHRKRAHDLDPPEGAEAKPFSCSVCGK 50
+DV QC + + F ++ + L +K + +DP + + S ++ +
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH-SSNIKLR 226
Query: 51 TFTRREHLRR--HQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVR-RWVA----- 102
+ + LRR + + LL V L NV+
Sbjct: 227 IHSIQAELRRLLKSKPYENCLL---------------V------LL-NVQNAKAWNAFNL 264
Query: 103 -CQ-----RIEGI-DVV-----RPFQCDVCNQGFVRKEHLVRHRK----RAHDLDPPEGA 146
C+ R + + D + D + E K R DL P E
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL-PREVL 323
Query: 147 EAKPFSCSVCGKTFTRREHLRRHQQI--HARELLQSSMDMSALTGLAGMGGELQMPLFAA 204
P S+ ++ R+ L + L + ++ S L L E + +F
Sbjct: 324 TTNPRRLSIIAESI--RDGLATWDNWKHVNCDKLTTIIESS-LNVLEP--AEYR-KMFDR 377
Query: 205 -SLMPEISMSSGGSGNSSPRVKKE--GDDGSEDPMEV--ELPPPEASSSPLNRPAAPAAL 259
S+ P S + + D D M V +L S + + + +
Sbjct: 378 LSVFPP-------SAHIPTILLSLIWFDVIKSDVMVVVNKL----HKYSLVEKQPKESTI 426
Query: 260 TALGGIPLAVREKLM------RPVIPRERPPKPIPKCDVCKK-----VFSRRSHLLRHLK 308
+ + I L ++ KL R ++ PK D+ +S H+ HLK
Sbjct: 427 S-IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS---HIGHHLK 482
Query: 309 RLHNIDPPPSSRNKQVPTYYL 329
+ + + R +L
Sbjct: 483 NIEHPE-----RMTLFRMVFL 498
Score = 37.1 bits (85), Expect = 0.009
Identities = 14/115 (12%), Positives = 36/115 (31%), Gaps = 9/115 (7%)
Query: 84 EEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVC--NQGFVRKEHLVRHRKRAHDLD 141
+ + + R + ++V+ F +V N F+ R+ +
Sbjct: 52 DHIIMSKDA-VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR 110
Query: 142 PPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHA-RELLQSSMDMSALTGLAGMGG 195
+ ++ + F + ++ R Q R+ L + + G+ G
Sbjct: 111 MYIEQRDRLYND---NQVFAKY-NVSRLQPYLKLRQALLELRPAKNVL-IDGVLG 160
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 45.6 bits (109), Expect = 3e-07
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
K + C+ CGK F+R L +HQ+IH
Sbjct: 11 KRYKCNECGKVFSRNSQLSQHQKIH 35
Score = 45.6 bits (109), Expect = 3e-07
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
K + C+ CGK F+R L +HQ+IH
Sbjct: 11 KRYKCNECGKVFSRNSQLSQHQKIH 35
Score = 35.6 bits (83), Expect = 0.001
Identities = 12/23 (52%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
KC+ C KVFSR S L +H +++H
Sbjct: 14 KCNECGKVFSRNSQLSQH-QKIH 35
Score = 30.2 bits (69), Expect = 0.078
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 8/42 (19%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 46
+ ++C+ C + F R L +H ++ H E KP S
Sbjct: 11 KRYKCNECGKVFSRNSQLSQH-QKIHT------GE-KPSGPS 44
Score = 30.2 bits (69), Expect = 0.078
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 8/42 (19%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 154
+ ++C+ C + F R L +H ++ H E KP S
Sbjct: 11 KRYKCNECGKVFSRNSQLSQH-QKIHT------GE-KPSGPS 44
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 45.6 bits (109), Expect = 3e-07
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
KP+ C CGK F R L H +H E
Sbjct: 11 KPYKCEECGKGFICRRDLYTHHMVHTGE 38
Score = 45.6 bits (109), Expect = 3e-07
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
KP+ C CGK F R L H +H E
Sbjct: 11 KPYKCEECGKGFICRRDLYTHHMVHTGE 38
Score = 34.4 bits (80), Expect = 0.003
Identities = 9/23 (39%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
KC+ C K F R L H +H
Sbjct: 14 KCEECGKGFICRRDLYTH-HMVH 35
Score = 29.4 bits (67), Expect = 0.13
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 8/42 (19%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 46
+P++C+ C +GF+ + L H H E KP S
Sbjct: 11 KPYKCEECGKGFICRRDLYTH-HMVHT------GE-KPSGPS 44
Score = 29.4 bits (67), Expect = 0.13
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 8/42 (19%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 154
+P++C+ C +GF+ + L H H E KP S
Sbjct: 11 KPYKCEECGKGFICRRDLYTH-HMVHT------GE-KPSGPS 44
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.6 bits (109), Expect = 3e-07
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
KP+ C CGK + + +L HQ++H
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKVH 35
Score = 45.6 bits (109), Expect = 3e-07
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
KP+ C CGK + + +L HQ++H
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKVH 35
Score = 34.0 bits (79), Expect = 0.003
Identities = 7/23 (30%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
KC+ C K ++ + +L H +++H
Sbjct: 14 KCEKCGKGYNSKFNLDMH-QKVH 35
Score = 29.4 bits (67), Expect = 0.17
Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 8/42 (19%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 46
+P++C+ C +G+ K +L H ++ H E +P S
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMH-QKVHT------GE-RPSGPS 44
Score = 29.4 bits (67), Expect = 0.17
Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 8/42 (19%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 154
+P++C+ C +G+ K +L H ++ H E +P S
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMH-QKVHT------GE-RPSGPS 44
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 45.6 bits (109), Expect = 3e-07
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
KPF C CGK F HQ+ H+ E
Sbjct: 11 KPFKCEECGKGFYTNSQCYSHQRSHSGE 38
Score = 45.6 bits (109), Expect = 3e-07
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
KPF C CGK F HQ+ H+ E
Sbjct: 11 KPFKCEECGKGFYTNSQCYSHQRSHSGE 38
Score = 33.3 bits (77), Expect = 0.007
Identities = 9/23 (39%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
KC+ C K F S H +R H
Sbjct: 14 KCEECGKGFYTNSQCYSH-QRSH 35
Score = 32.5 bits (75), Expect = 0.013
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 9/45 (20%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCG 49
+PF+C+ C +GF H+ R+H E KP S G
Sbjct: 11 KPFKCEECGKGFYTNSQCYSHQ-RSHS------GE-KPSGPS-SG 46
Score = 32.5 bits (75), Expect = 0.013
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 9/45 (20%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCG 157
+PF+C+ C +GF H+ R+H E KP S G
Sbjct: 11 KPFKCEECGKGFYTNSQCYSHQ-RSHS------GE-KPSGPS-SG 46
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.6 bits (109), Expect = 3e-07
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
KP+ C+ CGK F+ R L HQ IH
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIH 35
Score = 45.6 bits (109), Expect = 3e-07
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
KP+ C+ CGK F+ R L HQ IH
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIH 35
Score = 32.9 bits (76), Expect = 0.009
Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
+C+ C K FS RS L H + +H
Sbjct: 14 ECNQCGKAFSVRSSLTTH-QAIH 35
Score = 26.7 bits (60), Expect = 1.5
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 8/42 (19%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 46
+P++C+ C + F + L H + H + KP S
Sbjct: 11 KPYECNQCGKAFSVRSSLTTH-QAIHT------GK-KPSGPS 44
Score = 26.7 bits (60), Expect = 1.5
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 8/42 (19%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 154
+P++C+ C + F + L H + H + KP S
Sbjct: 11 KPYECNQCGKAFSVRSSLTTH-QAIHT------GK-KPSGPS 44
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.6 bits (109), Expect = 3e-07
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
KP+ C CGK F L RHQ+IH
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIH 35
Score = 45.6 bits (109), Expect = 3e-07
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
KP+ C CGK F L RHQ+IH
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIH 35
Score = 35.2 bits (82), Expect = 0.002
Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
CD C K F + L+RH +R+H
Sbjct: 14 VCDYCGKAFGLSAELVRH-QRIH 35
Score = 30.6 bits (70), Expect = 0.053
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 8/42 (19%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 46
+P+ CD C + F LVRH +R H E KP S
Sbjct: 11 KPYVCDYCGKAFGLSAELVRH-QRIHT------GE-KPSGPS 44
Score = 30.6 bits (70), Expect = 0.053
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 8/42 (19%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 154
+P+ CD C + F LVRH +R H E KP S
Sbjct: 11 KPYVCDYCGKAFGLSAELVRH-QRIHT------GE-KPSGPS 44
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 45.2 bits (108), Expect = 3e-07
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
KP+ C +CG F + L+ H +IH
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRIH 34
Score = 45.2 bits (108), Expect = 3e-07
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
KP+ C +CG F + L+ H +IH
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRIH 34
Score = 31.3 bits (72), Expect = 0.028
Identities = 8/23 (34%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
C++C F L HL R+H
Sbjct: 13 PCEICGTRFRHLQTLKSHL-RIH 34
Score = 29.4 bits (67), Expect = 0.16
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAH 30
+P+ C++C F + L H R H
Sbjct: 10 KPYPCEICGTRFRHLQTLKSH-LRIH 34
Score = 29.4 bits (67), Expect = 0.16
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAH 138
+P+ C++C F + L H R H
Sbjct: 10 KPYPCEICGTRFRHLQTLKSH-LRIH 34
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.2 bits (108), Expect = 3e-07
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
KP+ C+ CGK F +L HQ IH E
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQVIHTGE 38
Score = 45.2 bits (108), Expect = 3e-07
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
KP+ C+ CGK F +L HQ IH E
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQVIHTGE 38
Score = 34.8 bits (81), Expect = 0.002
Identities = 9/23 (39%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
KC+ C K F S+L H + +H
Sbjct: 14 KCNECGKAFRAHSNLTTH-QVIH 35
Score = 28.6 bits (65), Expect = 0.31
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 8/42 (19%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 46
+P++C+ C + F +L H + H E KP S
Sbjct: 11 KPYKCNECGKAFRAHSNLTTH-QVIHT------GE-KPSGPS 44
Score = 28.6 bits (65), Expect = 0.31
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 8/42 (19%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 154
+P++C+ C + F +L H + H E KP S
Sbjct: 11 KPYKCNECGKAFRAHSNLTTH-QVIHT------GE-KPSGPS 44
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.8 bits (107), Expect = 5e-07
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
KP+ CS CGK F+ + +L H + H
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTH 35
Score = 44.8 bits (107), Expect = 5e-07
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
KP+ CS CGK F+ + +L H + H
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTH 35
Score = 32.1 bits (74), Expect = 0.016
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
C C K FS +S+L+ H R H
Sbjct: 14 GCSECGKAFSSKSYLIIH-MRTH 35
Score = 29.4 bits (67), Expect = 0.15
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 8/42 (19%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 46
+P+ C C + F K +L+ H R H E KP S
Sbjct: 11 KPYGCSECGKAFSSKSYLIIH-MRTHS------GE-KPSGPS 44
Score = 29.4 bits (67), Expect = 0.15
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 8/42 (19%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 154
+P+ C C + F K +L+ H R H E KP S
Sbjct: 11 KPYGCSECGKAFSSKSYLIIH-MRTHS------GE-KPSGPS 44
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 44.8 bits (107), Expect = 5e-07
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
KP+ C+ C K F + +L HQ+ H
Sbjct: 11 KPYECNECQKAFNTKSNLMVHQRTH 35
Score = 44.8 bits (107), Expect = 5e-07
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
KP+ C+ C K F + +L HQ+ H
Sbjct: 11 KPYECNECQKAFNTKSNLMVHQRTH 35
Score = 32.5 bits (75), Expect = 0.012
Identities = 9/23 (39%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
+C+ C+K F+ +S+L+ H +R H
Sbjct: 14 ECNECQKAFNTKSNLMVH-QRTH 35
Score = 26.7 bits (60), Expect = 1.3
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 8/41 (19%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSC 45
+P++C+ C + F K +L+ H +R H E S
Sbjct: 11 KPYECNECQKAFNTKSNLMVH-QRTHT------GE-SGPSS 43
Score = 26.7 bits (60), Expect = 1.3
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 8/41 (19%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSC 153
+P++C+ C + F K +L+ H +R H E S
Sbjct: 11 KPYECNECQKAFNTKSNLMVH-QRTHT------GE-SGPSS 43
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.8 bits (107), Expect = 5e-07
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
KP+ C VC K F+ L +HQ++H+ E
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQRVHSGE 38
Score = 44.8 bits (107), Expect = 5e-07
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
KP+ C VC K F+ L +HQ++H+ E
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQRVHSGE 38
Score = 34.4 bits (80), Expect = 0.002
Identities = 11/23 (47%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
+CDVC+K FS + L +H +R+H
Sbjct: 14 ECDVCRKAFSHHASLTQH-QRVH 35
Score = 27.9 bits (63), Expect = 0.52
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 8/42 (19%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 46
+P++CDVC + F L +H +R H E KP S
Sbjct: 11 KPYECDVCRKAFSHHASLTQH-QRVHS------GE-KPSGPS 44
Score = 27.9 bits (63), Expect = 0.52
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 8/42 (19%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 154
+P++CDVC + F L +H +R H E KP S
Sbjct: 11 KPYECDVCRKAFSHHASLTQH-QRVHS------GE-KPSGPS 44
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.8 bits (107), Expect = 5e-07
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
KP++C CGK F L+ HQ+IH
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQRIH 35
Score = 44.8 bits (107), Expect = 5e-07
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
KP++C CGK F L+ HQ+IH
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQRIH 35
Score = 34.0 bits (79), Expect = 0.003
Identities = 9/23 (39%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
C+ C K F S L H +R+H
Sbjct: 14 NCEECGKAFIHDSQLQEH-QRIH 35
Score = 27.9 bits (63), Expect = 0.57
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 8/42 (19%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 46
+P+ C+ C + F+ L H +R H E KP S
Sbjct: 11 KPYNCEECGKAFIHDSQLQEH-QRIHT------GE-KPSGPS 44
Score = 27.9 bits (63), Expect = 0.57
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 8/42 (19%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 154
+P+ C+ C + F+ L H +R H E KP S
Sbjct: 11 KPYNCEECGKAFIHDSQLQEH-QRIHT------GE-KPSGPS 44
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.8 bits (107), Expect = 5e-07
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
KP+ C VC K+F L HQ+IH
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQRIH 35
Score = 44.8 bits (107), Expect = 5e-07
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
KP+ C VC K+F L HQ+IH
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQRIH 35
Score = 34.8 bits (81), Expect = 0.002
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
KCDVC K F S L H +R+H
Sbjct: 14 KCDVCHKSFRYGSSLTVH-QRIH 35
Score = 27.9 bits (63), Expect = 0.62
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 8/42 (19%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 46
+P++CDVC++ F L H +R H E KP S
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVH-QRIHT------GE-KPSGPS 44
Score = 27.9 bits (63), Expect = 0.62
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 8/42 (19%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 154
+P++CDVC++ F L H +R H E KP S
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVH-QRIHT------GE-KPSGPS 44
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.8 bits (107), Expect = 6e-07
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
KP+ C+ CGK F++ L RHQ++H
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVH 35
Score = 44.8 bits (107), Expect = 6e-07
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
KP+ C+ CGK F++ L RHQ++H
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVH 35
Score = 34.4 bits (80), Expect = 0.003
Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
+C+ C K FS+ S L RH +R+H
Sbjct: 14 QCNECGKAFSQTSKLARH-QRVH 35
Score = 28.7 bits (65), Expect = 0.29
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 8/42 (19%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 46
+P+QC+ C + F + L RH +R H KP S
Sbjct: 11 KPYQCNECGKAFSQTSKLARH-QRVH-------TGEKPSGPS 44
Score = 28.7 bits (65), Expect = 0.29
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 8/42 (19%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 154
+P+QC+ C + F + L RH +R H KP S
Sbjct: 11 KPYQCNECGKAFSQTSKLARH-QRVH-------TGEKPSGPS 44
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.8 bits (107), Expect = 6e-07
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
KP+ C+ CGK F R L HQ H
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATH 35
Score = 44.8 bits (107), Expect = 6e-07
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
KP+ C+ CGK F R L HQ H
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATH 35
Score = 32.1 bits (74), Expect = 0.015
Identities = 10/23 (43%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
KC+ C K F RS L H + H
Sbjct: 14 KCNECGKAFRARSSLAIH-QATH 35
Score = 27.5 bits (62), Expect = 0.79
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 8/42 (19%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 46
+P++C+ C + F + L H + H E KP S
Sbjct: 11 KPYKCNECGKAFRARSSLAIH-QATHS------GE-KPSGPS 44
Score = 27.5 bits (62), Expect = 0.79
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 8/42 (19%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 154
+P++C+ C + F + L H + H E KP S
Sbjct: 11 KPYKCNECGKAFRARSSLAIH-QATHS------GE-KPSGPS 44
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.8 bits (107), Expect = 6e-07
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
KP+ C+ CGK F++ L RHQ+IH E
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIHTGE 38
Score = 44.8 bits (107), Expect = 6e-07
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
KP+ C+ CGK F++ L RHQ+IH E
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIHTGE 38
Score = 34.4 bits (80), Expect = 0.003
Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
KC+ C K FS+ S L RH +R+H
Sbjct: 14 KCNECGKAFSQTSKLARH-QRIH 35
Score = 28.6 bits (65), Expect = 0.32
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 8/42 (19%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 46
+P++C+ C + F + L RH +R H KP S
Sbjct: 11 KPYKCNECGKAFSQTSKLARH-QRIH-------TGEKPSGPS 44
Score = 28.6 bits (65), Expect = 0.32
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 8/42 (19%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 154
+P++C+ C + F + L RH +R H KP S
Sbjct: 11 KPYKCNECGKAFSQTSKLARH-QRIH-------TGEKPSGPS 44
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 44.4 bits (106), Expect = 7e-07
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
KP+ C+ CGK F + +L H + H
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTH 35
Score = 44.4 bits (106), Expect = 7e-07
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
KP+ C+ CGK F + +L H + H
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTH 35
Score = 31.3 bits (72), Expect = 0.028
Identities = 9/23 (39%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
C+ C K F +S+L+ H R H
Sbjct: 14 VCNECGKAFRSKSYLIIH-TRTH 35
Score = 27.4 bits (62), Expect = 0.89
Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 6 PFQCDVCNQGFVRKEHLVRHRKRAH 30
P+ C+ C + F K +L+ H R H
Sbjct: 12 PYVCNECGKAFRSKSYLIIH-TRTH 35
Score = 27.4 bits (62), Expect = 0.89
Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 114 PFQCDVCNQGFVRKEHLVRHRKRAH 138
P+ C+ C + F K +L+ H R H
Sbjct: 12 PYVCNECGKAFRSKSYLIIH-TRTH 35
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 44.2 bits (104), Expect = 9e-07
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 34 PPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARE 68
G K +C +CGK F HL RH+ H+ E
Sbjct: 4 GSSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGE 38
Score = 44.2 bits (104), Expect = 9e-07
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 142 PPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARE 176
G K +C +CGK F HL RH+ H+ E
Sbjct: 4 GSSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGE 38
Score = 36.8 bits (85), Expect = 4e-04
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 8/44 (18%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC 48
+ C++C + F HL RH K +H + KP+S
Sbjct: 11 KQVACEICGKIFRDVYHLNRH-KLSH-------SGEKPYSSGPS 46
Score = 36.8 bits (85), Expect = 4e-04
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 8/44 (18%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVC 156
+ C++C + F HL RH K +H + KP+S
Sbjct: 11 KQVACEICGKIFRDVYHLNRH-KLSH-------SGEKPYSSGPS 46
Score = 33.0 bits (75), Expect = 0.010
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 279 PRERPPKPIPKCDVCKKVFSRRSHLLRHLKRLHNIDPP 316
+ C++C K+F HL RH K H+ + P
Sbjct: 4 GSSGRTRKQVACEICGKIFRDVYHLNRH-KLSHSGEKP 40
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 42
Score = 44.1 bits (105), Expect = 9e-07
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
KP+ C CGK F+++ L H ++H
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVH 34
Score = 44.1 bits (105), Expect = 9e-07
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
KP+ C CGK F+++ L H ++H
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVH 34
Score = 32.9 bits (76), Expect = 0.009
Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
+CD C K FS++ L+ H R+H
Sbjct: 13 RCDQCGKAFSQKGSLIVH-IRVH 34
Score = 28.3 bits (64), Expect = 0.37
Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAH 30
+P++CD C + F +K L+ H R H
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVH-IRVH 34
Score = 28.3 bits (64), Expect = 0.37
Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAH 138
+P++CD C + F +K L+ H R H
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVH-IRVH 34
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 44
Score = 44.1 bits (105), Expect = 1e-06
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
KP+ C+ CGK F + L H++ HA
Sbjct: 11 KPYECNECGKAFIWKSLLIVHERTHAGV 38
Score = 44.1 bits (105), Expect = 1e-06
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
KP+ C+ CGK F + L H++ HA
Sbjct: 11 KPYECNECGKAFIWKSLLIVHERTHAGV 38
Score = 31.7 bits (73), Expect = 0.025
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLHNIDPPPSS 319
+C+ C K F +S L+ H +R H PSS
Sbjct: 14 ECNECGKAFIWKSLLIVH-ERTHAGVSGPSS 43
Score = 26.7 bits (60), Expect = 1.3
Identities = 9/25 (36%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 6 PFQCDVCNQGFVRKEHLVRHRKRAH 30
P++C+ C + F+ K L+ H +R H
Sbjct: 12 PYECNECGKAFIWKSLLIVH-ERTH 35
Score = 26.7 bits (60), Expect = 1.3
Identities = 9/25 (36%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 114 PFQCDVCNQGFVRKEHLVRHRKRAH 138
P++C+ C + F+ K L+ H +R H
Sbjct: 12 PYECNECGKAFIWKSLLIVH-ERTH 35
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.0 bits (105), Expect = 1e-06
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
KP+ C+ CGK F+ L HQ IH
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIH 35
Score = 44.0 bits (105), Expect = 1e-06
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
KP+ C+ CGK F+ L HQ IH
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIH 35
Score = 34.4 bits (80), Expect = 0.003
Identities = 9/23 (39%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
C+ C K FS S L H + +H
Sbjct: 14 MCNECGKAFSVYSSLTTH-QVIH 35
Score = 27.5 bits (62), Expect = 0.82
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 8/42 (19%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 46
+P+ C+ C + F L H + H E KP S
Sbjct: 11 KPYMCNECGKAFSVYSSLTTH-QVIHT------GE-KPSGPS 44
Score = 27.5 bits (62), Expect = 0.82
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 8/42 (19%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 154
+P+ C+ C + F L H + H E KP S
Sbjct: 11 KPYMCNECGKAFSVYSSLTTH-QVIHT------GE-KPSGPS 44
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 43.7 bits (104), Expect = 1e-06
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
KP++C CGK+F L +HQ++H+ E
Sbjct: 11 KPYNCKECGKSFRWASCLLKHQRVHSGE 38
Score = 43.7 bits (104), Expect = 1e-06
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
KP++C CGK+F L +HQ++H+ E
Sbjct: 11 KPYNCKECGKSFRWASCLLKHQRVHSGE 38
Score = 31.4 bits (72), Expect = 0.032
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
C C K F S LL+H +R+H
Sbjct: 14 NCKECGKSFRWASCLLKH-QRVH 35
Score = 26.8 bits (60), Expect = 1.4
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 8/42 (19%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 46
+P+ C C + F L++H +R H E KP S
Sbjct: 11 KPYNCKECGKSFRWASCLLKH-QRVHS------GE-KPSGPS 44
Score = 26.8 bits (60), Expect = 1.4
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 8/42 (19%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 154
+P+ C C + F L++H +R H E KP S
Sbjct: 11 KPYNCKECGKSFRWASCLLKH-QRVHS------GE-KPSGPS 44
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 43.3 bits (103), Expect = 2e-06
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
KP+ C CGK F +HQ++H +
Sbjct: 11 KPYKCMECGKAFGDNSSCTQHQRLHTGQ 38
Score = 43.3 bits (103), Expect = 2e-06
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
KP+ C CGK F +HQ++H +
Sbjct: 11 KPYKCMECGKAFGDNSSCTQHQRLHTGQ 38
Score = 33.7 bits (78), Expect = 0.004
Identities = 10/23 (43%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
KC C K F S +H +RLH
Sbjct: 14 KCMECGKAFGDNSSCTQH-QRLH 35
Score = 27.5 bits (62), Expect = 0.82
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 8/42 (19%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 46
+P++C C + F +H +R H + +P S
Sbjct: 11 KPYKCMECGKAFGDNSSCTQH-QRLHT------GQ-RPSGPS 44
Score = 27.5 bits (62), Expect = 0.82
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 8/42 (19%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 154
+P++C C + F +H +R H + +P S
Sbjct: 11 KPYKCMECGKAFGDNSSCTQH-QRLHT------GQ-RPSGPS 44
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 43.3 bits (103), Expect = 2e-06
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
KP C CGK+F+ L HQ+IH
Sbjct: 11 KPHECRECGKSFSFNSQLIVHQRIH 35
Score = 43.3 bits (103), Expect = 2e-06
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
KP C CGK+F+ L HQ+IH
Sbjct: 11 KPHECRECGKSFSFNSQLIVHQRIH 35
Score = 31.7 bits (73), Expect = 0.022
Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
+C C K FS S L+ H +R+H
Sbjct: 14 ECRECGKSFSFNSQLIVH-QRIH 35
Score = 27.1 bits (61), Expect = 0.97
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 8/42 (19%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 46
+P +C C + F L+ H +R H E P S
Sbjct: 11 KPHECRECGKSFSFNSQLIVH-QRIHT------GE-NPSGPS 44
Score = 27.1 bits (61), Expect = 0.97
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 8/42 (19%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 154
+P +C C + F L+ H +R H E P S
Sbjct: 11 KPHECRECGKSFSFNSQLIVH-QRIHT------GE-NPSGPS 44
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 43.3 bits (103), Expect = 2e-06
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
+P+ C CGK F + L H++ H
Sbjct: 11 RPYECIECGKAFKTKSSLICHRRSH 35
Score = 43.3 bits (103), Expect = 2e-06
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
+P+ C CGK F + L H++ H
Sbjct: 11 RPYECIECGKAFKTKSSLICHRRSH 35
Score = 31.7 bits (73), Expect = 0.026
Identities = 9/23 (39%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
+C C K F +S L+ H +R H
Sbjct: 14 ECIECGKAFKTKSSLICH-RRSH 35
Score = 28.7 bits (65), Expect = 0.26
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 8/42 (19%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 46
RP++C C + F K L+ HR R+H E KP S
Sbjct: 11 RPYECIECGKAFKTKSSLICHR-RSHT------GE-KPSGPS 44
Score = 28.7 bits (65), Expect = 0.26
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 8/42 (19%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 154
RP++C C + F K L+ HR R+H E KP S
Sbjct: 11 RPYECIECGKAFKTKSSLICHR-RSHT------GE-KPSGPS 44
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 43.9 bits (103), Expect = 2e-06
Identities = 12/64 (18%), Positives = 20/64 (31%), Gaps = 15/64 (23%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 64
R +C C F+R+ L R K C C K + L + +
Sbjct: 17 RSQKCSKCGIIFIRRSTLSRR---------------KTPMCEKCRKDSCQEAALNKDEGN 61
Query: 65 HARE 68
+ +
Sbjct: 62 ESGK 65
Score = 43.9 bits (103), Expect = 2e-06
Identities = 12/64 (18%), Positives = 20/64 (31%), Gaps = 15/64 (23%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 172
R +C C F+R+ L R K C C K + L + +
Sbjct: 17 RSQKCSKCGIIFIRRSTLSRR---------------KTPMCEKCRKDSCQEAALNKDEGN 61
Query: 173 HARE 176
+ +
Sbjct: 62 ESGK 65
Score = 25.4 bits (55), Expect = 9.4
Identities = 6/32 (18%), Positives = 13/32 (40%), Gaps = 5/32 (15%)
Query: 280 RERPPKPIPKCDVCKKVFSRRSHLLRHLKRLH 311
R + P C+ C+K + + L + +
Sbjct: 36 RRKTPM----CEKCRKDSCQEAALNKD-EGNE 62
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 43.0 bits (102), Expect = 3e-06
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
K +C CGK F LR HQ++H E
Sbjct: 11 KSHTCDECGKNFCYISALRIHQRVHMGE 38
Score = 43.0 bits (102), Expect = 3e-06
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
K +C CGK F LR HQ++H E
Sbjct: 11 KSHTCDECGKNFCYISALRIHQRVHMGE 38
Score = 29.9 bits (68), Expect = 0.13
Identities = 10/23 (43%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
CD C K F S L H +R+H
Sbjct: 14 TCDECGKNFCYISALRIH-QRVH 35
Score = 25.6 bits (57), Expect = 4.1
Identities = 8/26 (30%), Positives = 11/26 (42%), Gaps = 1/26 (3%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAH 30
+ CD C + F L H +R H
Sbjct: 11 KSHTCDECGKNFCYISALRIH-QRVH 35
Score = 25.6 bits (57), Expect = 4.1
Identities = 8/26 (30%), Positives = 11/26 (42%), Gaps = 1/26 (3%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAH 138
+ CD C + F L H +R H
Sbjct: 11 KSHTCDECGKNFCYISALRIH-QRVH 35
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 41.0 bits (97), Expect = 1e-05
Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQ-QIH 65
KP+ C CGK F + L RH H
Sbjct: 11 KPYECIECGKAFIQNTSLIRHWRYYH 36
Score = 41.0 bits (97), Expect = 1e-05
Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQ-QIH 173
KP+ C CGK F + L RH H
Sbjct: 11 KPYECIECGKAFIQNTSLIRHWRYYH 36
Score = 34.1 bits (79), Expect = 0.004
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLH 311
+C C K F + + L+RH + H
Sbjct: 14 ECIECGKAFIQNTSLIRHWRYYH 36
Score = 31.8 bits (73), Expect = 0.027
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 7/42 (16%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 46
+P++C C + F++ L+RH + H E KP S
Sbjct: 11 KPYECIECGKAFIQNTSLIRHWRYYHT------GE-KPSGPS 45
Score = 31.8 bits (73), Expect = 0.027
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 7/42 (16%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 154
+P++C C + F++ L+RH + H E KP S
Sbjct: 11 KPYECIECGKAFIQNTSLIRHWRYYHT------GE-KPSGPS 45
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 40.8 bits (96), Expect = 1e-05
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
KPF C C ++F+R +HL H++ H
Sbjct: 10 KPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 40.8 bits (96), Expect = 1e-05
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
KPF C C ++F+R +HL H++ H
Sbjct: 10 KPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 38.1 bits (89), Expect = 1e-04
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 4 VRPFQCDVCNQGFVRKEHLVRHRKR 28
++PFQC C++ F R +HL HRKR
Sbjct: 9 IKPFQCPDCDRSFSRSDHLALHRKR 33
Score = 38.1 bits (89), Expect = 1e-04
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 112 VRPFQCDVCNQGFVRKEHLVRHRKR 136
++PFQC C++ F R +HL HRKR
Sbjct: 9 IKPFQCPDCDRSFSRSDHLALHRKR 33
Score = 33.1 bits (76), Expect = 0.007
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 289 KCDVCKKVFSRRSHLLRHLKR 309
+C C + FSR HL H KR
Sbjct: 13 QCPDCDRSFSRSDHLALHRKR 33
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 40.4 bits (95), Expect = 2e-05
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 41 KPFSCSV--CGKTFTRREHLRRHQQIHARE 68
KPF+C+ CG F+R + L RH++ H+
Sbjct: 11 KPFACTWPGCGWRFSRSDELSRHRRSHSGV 40
Score = 40.4 bits (95), Expect = 2e-05
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 149 KPFSCSV--CGKTFTRREHLRRHQQIHARE 176
KPF+C+ CG F+R + L RH++ H+
Sbjct: 11 KPFACTWPGCGWRFSRSDELSRHRRSHSGV 40
Score = 32.7 bits (75), Expect = 0.010
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 10/44 (22%)
Query: 5 RPFQCDV--CNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 46
+PF C C F R + L RHR R+H + KP S
Sbjct: 11 KPFACTWPGCGWRFSRSDELSRHR-RSH-------SGVKPSGPS 46
Score = 32.7 bits (75), Expect = 0.010
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 10/44 (22%)
Query: 113 RPFQCDV--CNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCS 154
+PF C C F R + L RHR R+H + KP S
Sbjct: 11 KPFACTWPGCGWRFSRSDELSRHR-RSH-------SGVKPSGPS 46
Score = 26.5 bits (59), Expect = 1.8
Identities = 10/25 (40%), Positives = 11/25 (44%), Gaps = 3/25 (12%)
Query: 289 KCDV--CKKVFSRRSHLLRHLKRLH 311
C C FSR L RH +R H
Sbjct: 14 ACTWPGCGWRFSRSDELSRH-RRSH 37
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 40.5 bits (94), Expect = 3e-05
Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 8/62 (12%)
Query: 7 FQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHA 66
+ C+ C + L +H R H + +P+ C+ C +F + +L +H + A
Sbjct: 2 YICEECGIRXKKPSMLKKH-IRTH-------TDVRPYHCTYCNFSFKTKGNLTKHMKSKA 53
Query: 67 RE 68
Sbjct: 54 HS 55
Score = 40.5 bits (94), Expect = 3e-05
Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 8/62 (12%)
Query: 115 FQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHA 174
+ C+ C + L +H R H + +P+ C+ C +F + +L +H + A
Sbjct: 2 YICEECGIRXKKPSMLKKH-IRTH-------TDVRPYHCTYCNFSFKTKGNLTKHMKSKA 53
Query: 175 RE 176
Sbjct: 54 HS 55
Score = 31.6 bits (71), Expect = 0.043
Identities = 16/91 (17%), Positives = 23/91 (25%), Gaps = 44/91 (48%)
Query: 45 CSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALTGLAEEVFPTPLRLDENVRRWVACQ 104
C CG + L++H + H
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDV------------------------------------ 27
Query: 105 RIEGIDVVRPFQCDVCNQGFVRKEHLVRHRK 135
RP+ C CN F K +L +H K
Sbjct: 28 --------RPYHCTYCNFSFKTKGNLTKHMK 50
Score = 27.4 bits (60), Expect = 1.2
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRK 27
RP+ C CN F K +L +H K
Sbjct: 28 RPYHCTYCNFSFKTKGNLTKHMK 50
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 38.7 bits (91), Expect = 5e-05
Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
Query: 41 KPFSCSV--CGKTFTRREHLRRHQQIH 65
+PF C+ CGK FTR + L+RH++ H
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTH 27
Score = 38.7 bits (91), Expect = 5e-05
Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
Query: 149 KPFSCSV--CGKTFTRREHLRRHQQIH 173
+PF C+ CGK FTR + L+RH++ H
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTH 27
Score = 30.7 bits (70), Expect = 0.042
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Query: 5 RPFQCDV--CNQGFVRKEHLVRHRKRAH 30
RPF C C + F R + L RH+ R H
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHK-RTH 27
Score = 30.7 bits (70), Expect = 0.042
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Query: 113 RPFQCDV--CNQGFVRKEHLVRHRKRAH 138
RPF C C + F R + L RH+ R H
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHK-RTH 27
Score = 24.9 bits (55), Expect = 4.7
Identities = 10/19 (52%), Positives = 11/19 (57%), Gaps = 1/19 (5%)
Query: 293 CKKVFSRRSHLLRHLKRLH 311
C K F+R L RH KR H
Sbjct: 10 CGKRFTRSDELQRH-KRTH 27
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 37.9 bits (88), Expect = 1e-04
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQ-IHAREL 69
K ++C +C + FTRR+ L RH Q IH+ L
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIHSGNL 30
Score = 37.9 bits (88), Expect = 1e-04
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQ-IHAREL 177
K ++C +C + FTRR+ L RH Q IH+ L
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIHSGNL 30
Score = 33.7 bits (77), Expect = 0.003
Identities = 9/26 (34%), Positives = 18/26 (69%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAH 30
+ + C +CN+ F R++ L+RH ++ H
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIH 26
Score = 33.7 bits (77), Expect = 0.003
Identities = 9/26 (34%), Positives = 18/26 (69%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAH 138
+ + C +CN+ F R++ L+RH ++ H
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIH 26
Score = 32.1 bits (73), Expect = 0.012
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLHN 312
C +C + F+RR L+RH +++H+
Sbjct: 4 ACGLCNRAFTRRDLLIRHAQKIHS 27
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 39.5 bits (91), Expect = 2e-04
Identities = 16/92 (17%), Positives = 29/92 (31%), Gaps = 18/92 (19%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDP-----------------PEGAEAKPFSCSV 47
+QC +CN H + + E K +C
Sbjct: 15 EVYQCRLCNAKLSSLLEQGSHERLCRNAAVCPYCSLRFFSPELKQEHESKCEYKKLTCLE 74
Query: 48 CGKTFTRREHLRRHQ-QIHARELLQSSMDMSA 78
C +TF + RHQ ++H + + + S+
Sbjct: 75 CMRTFKSSFSIWRHQVEVHNQNNMAPTSGPSS 106
Score = 39.5 bits (91), Expect = 2e-04
Identities = 16/92 (17%), Positives = 29/92 (31%), Gaps = 18/92 (19%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDP-----------------PEGAEAKPFSCSV 155
+QC +CN H + + E K +C
Sbjct: 15 EVYQCRLCNAKLSSLLEQGSHERLCRNAAVCPYCSLRFFSPELKQEHESKCEYKKLTCLE 74
Query: 156 CGKTFTRREHLRRHQ-QIHARELLQSSMDMSA 186
C +TF + RHQ ++H + + + S+
Sbjct: 75 CMRTFKSSFSIWRHQVEVHNQNNMAPTSGPSS 106
Score = 26.4 bits (57), Expect = 6.2
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLHN 312
C C + F + RH +HN
Sbjct: 71 TCLECMRTFKSSFSIWRHQVEVHN 94
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 37.9 bits (88), Expect = 2e-04
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 39 EAKPFSCSV--CGKTFTRREHLRRHQQIH 65
K F C C KTF RR ++R H Q H
Sbjct: 15 PDKTFECLFPGCTKTFKRRYNIRSHIQTH 43
Score = 37.9 bits (88), Expect = 2e-04
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 147 EAKPFSCSV--CGKTFTRREHLRRHQQIH 173
K F C C KTF RR ++R H Q H
Sbjct: 15 PDKTFECLFPGCTKTFKRRYNIRSHIQTH 43
>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding
protein, C2H2 type zinc-finger, structural genomics;
NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2
Length = 79
Score = 37.5 bits (87), Expect = 5e-04
Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 9/51 (17%)
Query: 7 FQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREH 57
F C+ C + V+K + +H + + SC CGK F ++
Sbjct: 11 FTCNACGES-VKKIQVEKHVSNCRN--------CECLSCIDCGKDFWGDDY 52
Score = 37.5 bits (87), Expect = 5e-04
Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 9/51 (17%)
Query: 115 FQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREH 165
F C+ C + V+K + +H + + SC CGK F ++
Sbjct: 11 FTCNACGES-VKKIQVEKHVSNCRN--------CECLSCIDCGKDFWGDDY 52
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 36.3 bits (83), Expect = 5e-04
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 37 GAEAKPFSCSVCGKTFTRREHLRRHQQIHAR 67
G + K F C+ C KTF+ ++L +H++IH R
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHERIHTR 37
Score = 36.3 bits (83), Expect = 5e-04
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 145 GAEAKPFSCSVCGKTFTRREHLRRHQQIHAR 175
G + K F C+ C KTF+ ++L +H++IH R
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHERIHTR 37
Score = 25.9 bits (56), Expect = 3.4
Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 283 PPKPIPKCDVCKKVFSRRSHLLRHLKRLH 311
+ KC+ C+K FS +L +H +R+H
Sbjct: 8 QKEKCFKCNKCEKTFSCSKYLTQH-ERIH 35
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 35.4 bits (82), Expect = 0.001
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 36 EGAEAKPFSCSV--CGKTFTRREHLRRHQQIHARE 68
+ + K C + CGK + + HLR H + H E
Sbjct: 2 DPGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGE 36
Score = 35.4 bits (82), Expect = 0.001
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 144 EGAEAKPFSCSV--CGKTFTRREHLRRHQQIHARE 176
+ + K C + CGK + + HLR H + H E
Sbjct: 2 DPGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGE 36
Score = 26.5 bits (59), Expect = 1.3
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 3/25 (12%)
Query: 289 KCDV--CKKVFSRRSHLLRHLKRLH 311
C + C KV+ + SHL HL R H
Sbjct: 10 ICHIQGCGKVYGKTSHLRAHL-RWH 33
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 39.8 bits (92), Expect = 0.001
Identities = 9/46 (19%), Positives = 12/46 (26%)
Query: 27 KRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARELLQS 72
A PP + + C VC L H H +
Sbjct: 165 HPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHGNMT 210
Score = 39.8 bits (92), Expect = 0.001
Identities = 9/46 (19%), Positives = 12/46 (26%)
Query: 135 KRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARELLQS 180
A PP + + C VC L H H +
Sbjct: 165 HPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHGNMT 210
Score = 37.9 bits (87), Expect = 0.005
Identities = 13/103 (12%), Positives = 25/103 (24%), Gaps = 1/103 (0%)
Query: 213 SSGGSGNSSPRVKKEGDDGSEDPMEVELPPPEASSSPLNRPAAPAALTALGGIPLAVREK 272
+ + ++ + + EL + P + V +
Sbjct: 106 TQKQAKDTDKSKAQVTYSDTGINNANELSRSGNVDNEGGSNQKPMSTRIAEATSAIVSKH 165
Query: 273 LMRPVIPRERPPKPIPKCDVCKKVFSRRSHLLRHLKRLHNIDP 315
R +P +C VC V L H H +
Sbjct: 166 PARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAH-VASHGLHG 207
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.6 bits (92), Expect = 0.001
Identities = 21/117 (17%), Positives = 35/117 (29%), Gaps = 22/117 (18%)
Query: 240 LPPPEASSSPLNRPAAPAALTALGGIPLAVREKLMRPVIPRERPPKPIPKCDVCKKVFSR 299
LP P + + P PA L K + V P K V +
Sbjct: 41 LPEPTEGFAADDEPTTPAELVG----------KFLGYVSSLVEPSKVGQFDQVLNLCLTE 90
Query: 300 -RSHLLR----H--LKRLHNIDPPPSSRNKQV-PTYYLLKLLSKTPMLGVTVKPYQS 348
+ L H +L + + K++ Y ++++K P K S
Sbjct: 91 FENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPF----DKKSNS 143
Score = 34.3 bits (78), Expect = 0.076
Identities = 56/393 (14%), Positives = 98/393 (24%), Gaps = 137/393 (34%)
Query: 30 HDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARELLQSSMDMSALT-------GL 82
+ D + + + +R ++ A L ++ + +A G
Sbjct: 110 QENDTTLVKTKELIKNYITARIMAKRPFDKKSN--SA--LFRAVGEGNAQLVAIFGGQGN 165
Query: 83 AEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRKRA----- 137
++ F +E + D+ L+R A
Sbjct: 166 TDDYF------EELRDLY---------QTYHVLVGDLIKFSAETLSELIRTTLDAEKVFT 210
Query: 138 HDLD-----------PPEG--AEAKPFSCSVCGKTFTRREHLRRHQQIH----ARELLQS 180
L+ P + P SC + G Q H A+ L +
Sbjct: 211 QGLNILEWLENPSNTPDKDYLLSI-PISCPLIGVI----------QLAHYVVTAKLLGFT 259
Query: 181 SMDM-SALTGLAGMGGELQMPLFAASLMPEISMSSGGSGNSSPRVKKE--------GDDG 231
++ S L G G L A I+ + S S ++ G
Sbjct: 260 PGELRSYLKGATGHSQGL----VTAVA---IAET--DSWESFFVSVRKAITVLFFIGVRC 310
Query: 232 SEDPMEVELPPPEASSSPLNRPAAPAALTALGGIPLAVREKLMRPV---IPRER------ 282
E LPP S N P+ + ++ + + + +P +
Sbjct: 311 YEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISL 370
Query: 283 -----------PP-------------KPIPKCDVCKKVFSRR----------------SH 302
PP K D + FS R SH
Sbjct: 371 VNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSH 430
Query: 303 LLR--------HLKRLHNIDPPPSSRNKQVPTY 327
LL L + +N+ Q+P Y
Sbjct: 431 LLVPASDLINKDLVK-NNVSFNAKDI--QIPVY 460
Score = 30.8 bits (69), Expect = 0.73
Identities = 26/119 (21%), Positives = 42/119 (35%), Gaps = 27/119 (22%)
Query: 241 PPPEASSSPLNRPAA--PAALTAL-GG---IPLAVRE---------KLMRPVIPRERPP- 284
P + S+S L R A L A+ GG E L+ +I
Sbjct: 136 PFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETL 195
Query: 285 KPIPKCDV-CKKVFSRRSHLLRHLKRLHNIDPPPSSRNKQVPTYYLLKLLSKTPMLGVT 342
+ + + +KVF++ ++L L N P YLL + P++GV
Sbjct: 196 SELIRTTLDAEKVFTQGLNILEW---LENPSNTP-------DKDYLLSIPISCPLIGVI 244
Score = 27.7 bits (61), Expect = 7.5
Identities = 11/73 (15%), Positives = 18/73 (24%), Gaps = 36/73 (49%)
Query: 77 SALTGLAEEVFPTPLRLDENVRRWVACQRIEGIDVVRPFQCDVCNQGFVRKEHLVRHRKR 136
+AL LA+ V IE +V +V +R
Sbjct: 1768 AALASLAD-VMS-----------------IE--SLVE----------------VVFYRGM 1791
Query: 137 AHDLDPPEGAEAK 149
+ P +
Sbjct: 1792 TMQVAVPRDELGR 1804
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 35.3 bits (80), Expect = 0.002
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 38 AEAKPFSCSVCGKTFTRREHLRRHQQIHARELLQS 72
+ KP+SC VCG F R++ + H + H + +S
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKS 40
Score = 35.3 bits (80), Expect = 0.002
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 146 AEAKPFSCSVCGKTFTRREHLRRHQQIHARELLQS 180
+ KP+SC VCG F R++ + H + H + +S
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKS 40
Score = 33.7 bits (76), Expect = 0.005
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 4/37 (10%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKR----AHDLDPPEG 37
+P+ C VC F RK+ + H + P G
Sbjct: 9 KPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG 45
Score = 33.7 bits (76), Expect = 0.005
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 4/37 (10%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKR----AHDLDPPEG 145
+P+ C VC F RK+ + H + P G
Sbjct: 9 KPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG 45
Score = 24.9 bits (53), Expect = 7.5
Identities = 7/32 (21%), Positives = 12/32 (37%), Gaps = 4/32 (12%)
Query: 289 KCDVCKKVFSRRSHLLRHLKR----LHNIDPP 316
C VC F R+ + H++ + P
Sbjct: 12 SCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPS 43
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 33.7 bits (76), Expect = 0.005
Identities = 15/37 (40%), Positives = 16/37 (43%)
Query: 37 GAEAKPFSCSVCGKTFTRREHLRRHQQIHARELLQSS 73
GA C CGK F L HQ +HA E SS
Sbjct: 7 GAAKTTSECQECGKIFRHSSLLIEHQALHAGESGPSS 43
Score = 33.7 bits (76), Expect = 0.005
Identities = 15/37 (40%), Positives = 16/37 (43%)
Query: 145 GAEAKPFSCSVCGKTFTRREHLRRHQQIHARELLQSS 181
GA C CGK F L HQ +HA E SS
Sbjct: 7 GAAKTTSECQECGKIFRHSSLLIEHQALHAGESGPSS 43
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 33.7 bits (76), Expect = 0.005
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 37 GAEAKPFSCSVCGKTFTRREHLRRHQQIHARELLQSS 73
G K + CS C TF R+HL +HQ+ HA + SS
Sbjct: 7 GHTRKRYECSKCQATFNLRKHLIQHQKTHAAKSGPSS 43
Score = 33.7 bits (76), Expect = 0.005
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 145 GAEAKPFSCSVCGKTFTRREHLRRHQQIHARELLQSS 181
G K + CS C TF R+HL +HQ+ HA + SS
Sbjct: 7 GHTRKRYECSKCQATFNLRKHLIQHQKTHAAKSGPSS 43
Score = 27.6 bits (60), Expect = 0.82
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLHNIDPPPSS 319
+C C+ F+ R HL++H ++ H PSS
Sbjct: 14 ECSKCQATFNLRKHLIQH-QKTHAAKSGPSS 43
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 35.1 bits (80), Expect = 0.006
Identities = 10/58 (17%), Positives = 14/58 (24%), Gaps = 4/58 (6%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQ 62
++C C H H P + C C R + L H
Sbjct: 17 GGYECKYCTFQTPDLNMFTFHVDSEH----PNVVLNSSYVCVECNFLTKRYDALSEHN 70
Score = 35.1 bits (80), Expect = 0.006
Identities = 10/58 (17%), Positives = 14/58 (24%), Gaps = 4/58 (6%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQ 170
++C C H H P + C C R + L H
Sbjct: 17 GGYECKYCTFQTPDLNMFTFHVDSEH----PNVVLNSSYVCVECNFLTKRYDALSEHN 70
Score = 27.4 bits (60), Expect = 2.7
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 7 FQCDVCNQGFVRKEHLVRHRKRAH 30
+ C CN R + L H + H
Sbjct: 51 YVCVECNFLTKRYDALSEHNLKYH 74
Score = 27.4 bits (60), Expect = 2.7
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 115 FQCDVCNQGFVRKEHLVRHRKRAH 138
+ C CN R + L H + H
Sbjct: 51 YVCVECNFLTKRYDALSEHNLKYH 74
Score = 26.3 bits (57), Expect = 6.2
Identities = 6/26 (23%), Positives = 8/26 (30%)
Query: 286 PIPKCDVCKKVFSRRSHLLRHLKRLH 311
C C + R L H + H
Sbjct: 49 SSYVCVECNFLTKRYDALSEHNLKYH 74
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 32
Score = 33.1 bits (75), Expect = 0.007
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 41 KPFSCSV--CGKTFTRREHLRRHQQIHAR 67
+P+SC C K F R L RH++ H
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQE 30
Score = 33.1 bits (75), Expect = 0.007
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 149 KPFSCSV--CGKTFTRREHLRRHQQIHAR 175
+P+SC C K F R L RH++ H
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQE 30
Score = 31.9 bits (72), Expect = 0.014
Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Query: 5 RPFQCDV--CNQGFVRKEHLVRHRK 27
RP+ CD C++ FVR L+RH+K
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKK 26
Score = 31.9 bits (72), Expect = 0.014
Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Query: 113 RPFQCDV--CNQGFVRKEHLVRHRK 135
RP+ CD C++ FVR L+RH+K
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKK 26
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 32.9 bits (74), Expect = 0.008
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
+P+SCSVCGK F+ + + H ++H
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVH 26
Score = 32.9 bits (74), Expect = 0.008
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
+P+SCSVCGK F+ + + H ++H
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVH 26
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Length = 29
Score = 32.6 bits (74), Expect = 0.008
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 43 FSCSVCGKTFTRREHLRRHQQIHARE 68
F+C C K F R +HL H +H +
Sbjct: 3 FACPECPKRFMRSDHLTLHILLHENK 28
Score = 32.6 bits (74), Expect = 0.008
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 151 FSCSVCGKTFTRREHLRRHQQIHARE 176
F+C C K F R +HL H +H +
Sbjct: 3 FACPECPKRFMRSDHLTLHILLHENK 28
Score = 30.2 bits (68), Expect = 0.054
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 7 FQCDVCNQGFVRKEHLVRHRKR 28
F C C + F+R +HL H
Sbjct: 3 FACPECPKRFMRSDHLTLHILL 24
Score = 30.2 bits (68), Expect = 0.054
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 115 FQCDVCNQGFVRKEHLVRHRKR 136
F C C + F+R +HL H
Sbjct: 3 FACPECPKRFMRSDHLTLHILL 24
Score = 27.6 bits (61), Expect = 0.54
Identities = 8/20 (40%), Positives = 9/20 (45%)
Query: 290 CDVCKKVFSRRSHLLRHLKR 309
C C K F R HL H+
Sbjct: 5 CPECPKRFMRSDHLTLHILL 24
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1
Length = 33
Score = 32.6 bits (74), Expect = 0.009
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 43 FSCSVCGKTFTRREHLRRHQQIH 65
F+C C K F R +HL +H +H
Sbjct: 3 FACPECPKRFMRSDHLSKHITLH 25
Score = 32.6 bits (74), Expect = 0.009
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 151 FSCSVCGKTFTRREHLRRHQQIH 173
F+C C K F R +HL +H +H
Sbjct: 3 FACPECPKRFMRSDHLSKHITLH 25
Score = 29.9 bits (67), Expect = 0.093
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 7 FQCDVCNQGFVRKEHLVRHRKR 28
F C C + F+R +HL +H
Sbjct: 3 FACPECPKRFMRSDHLSKHITL 24
Score = 29.9 bits (67), Expect = 0.093
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 115 FQCDVCNQGFVRKEHLVRHRKR 136
F C C + F+R +HL +H
Sbjct: 3 FACPECPKRFMRSDHLSKHITL 24
Score = 27.6 bits (61), Expect = 0.64
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 290 CDVCKKVFSRRSHLLRHLKR 309
C C K F R HL +H+
Sbjct: 5 CPECPKRFMRSDHLSKHITL 24
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 32.5 bits (73), Expect = 0.011
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 37 GAEAKPFSCSVCGKTFTRREHLRRHQQIHARE 68
G+ K F+C C K F + L+ H +IH E
Sbjct: 4 GSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNE 35
Score = 32.5 bits (73), Expect = 0.011
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 145 GAEAKPFSCSVCGKTFTRREHLRRHQQIHARE 176
G+ K F+C C K F + L+ H +IH E
Sbjct: 4 GSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNE 35
Score = 25.6 bits (55), Expect = 3.7
Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 290 CDVCKKVFSRRSHLLRHLKRLH 311
C+ C KVF + L HL R+H
Sbjct: 12 CEYCNKVFKFKHSLQAHL-RIH 32
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 32.1 bits (72), Expect = 0.017
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 37 GAEAKPFSCSVCGKTFTRREHLRRHQQIHARE 68
G+ K C CG+ F + L HQ +H +
Sbjct: 7 GSREKSHQCRECGEIFFQYVSLIEHQVLHMGQ 38
Score = 32.1 bits (72), Expect = 0.017
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 145 GAEAKPFSCSVCGKTFTRREHLRRHQQIHARE 176
G+ K C CG+ F + L HQ +H +
Sbjct: 7 GSREKSHQCRECGEIFFQYVSLIEHQVLHMGQ 38
>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation
domain, Zn finger, DNA-binding regulatory protein; NMR
{Homo sapiens} SCOP: g.37.1.1
Length = 38
Score = 30.8 bits (69), Expect = 0.049
Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Query: 5 RPFQCDV--CNQGFVRKEHLVRHRKRAHDL 32
+PF C C Q F ++HL H+ + H++
Sbjct: 5 KPFLCTAPGCGQRFTNEDHLAVHKHK-HEM 33
Score = 30.8 bits (69), Expect = 0.049
Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Query: 113 RPFQCDV--CNQGFVRKEHLVRHRKRAHDL 140
+PF C C Q F ++HL H+ + H++
Sbjct: 5 KPFLCTAPGCGQRFTNEDHLAVHKHK-HEM 33
Score = 29.3 bits (65), Expect = 0.16
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 41 KPFSCSV--CGKTFTRREHLRRHQQIH 65
KPF C+ CG+ FT +HL H+ H
Sbjct: 5 KPFLCTAPGCGQRFTNEDHLAVHKHKH 31
Score = 29.3 bits (65), Expect = 0.16
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 149 KPFSCSV--CGKTFTRREHLRRHQQIH 173
KPF C+ CG+ FT +HL H+ H
Sbjct: 5 KPFLCTAPGCGQRFTNEDHLAVHKHKH 31
>1njq_A Superman protein; zinc-finger, peptide-zinc complex,
beta-BETA-ALFA motif, metal binding protein; NMR
{Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Length = 39
Score = 30.5 bits (69), Expect = 0.066
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
+ ++CS C + F + L H +H R+
Sbjct: 5 RSYTCSFCKREFRSAQALGGHMNVHRRD 32
Score = 30.5 bits (69), Expect = 0.066
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
+ ++CS C + F + L H +H R+
Sbjct: 5 RSYTCSFCKREFRSAQALGGHMNVHRRD 32
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 30.1 bits (67), Expect = 0.087
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHAREL 69
+PF C +C FT + + RH ++H L
Sbjct: 6 RPFVCRICLSAFTTKANCARHLKVHTDTL 34
Score = 30.1 bits (67), Expect = 0.087
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHAREL 177
+PF C +C FT + + RH ++H L
Sbjct: 6 RPFVCRICLSAFTTKANCARHLKVHTDTL 34
Score = 25.9 bits (56), Expect = 2.8
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRK 27
RPF C +C F K + RH K
Sbjct: 6 RPFVCRICLSAFTTKANCARHLK 28
Score = 25.9 bits (56), Expect = 2.8
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRK 135
RPF C +C F K + RH K
Sbjct: 6 RPFVCRICLSAFTTKANCARHLK 28
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, classical zinc finger, transcription; NMR {Homo
sapiens}
Length = 30
Score = 29.7 bits (66), Expect = 0.10
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
KP+ C C + F L+RH +IH E
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGE 29
Score = 29.7 bits (66), Expect = 0.10
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
KP+ C C + F L+RH +IH E
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGE 29
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Length = 32
Score = 29.7 bits (66), Expect = 0.10
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 7 FQCDVCNQGFVRKEHLVRHRKRAHDL 32
F C C + F+R + L +H K A +
Sbjct: 3 FACPACPKRFMRSDALSKHIKTAFIV 28
Score = 29.7 bits (66), Expect = 0.10
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 115 FQCDVCNQGFVRKEHLVRHRKRAHDL 140
F C C + F+R + L +H K A +
Sbjct: 3 FACPACPKRFMRSDALSKHIKTAFIV 28
Score = 28.9 bits (64), Expect = 0.17
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 43 FSCSVCGKTFTRREHLRRH 61
F+C C K F R + L +H
Sbjct: 3 FACPACPKRFMRSDALSKH 21
Score = 28.9 bits (64), Expect = 0.17
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 151 FSCSVCGKTFTRREHLRRH 169
F+C C K F R + L +H
Sbjct: 3 FACPACPKRFMRSDALSKH 21
>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 66
Score = 29.4 bits (65), Expect = 0.27
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 39 EAKPFSCSVCGKTFTRREHLRRHQQIHARELLQ 71
EA C +CGK FT LR+H+ H LQ
Sbjct: 10 EAGILPCGLCGKVFTDANRLRQHEAQHGVTSLQ 42
Score = 29.4 bits (65), Expect = 0.27
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 147 EAKPFSCSVCGKTFTRREHLRRHQQIHARELLQ 179
EA C +CGK FT LR+H+ H LQ
Sbjct: 10 EAGILPCGLCGKVFTDANRLRQHEAQHGVTSLQ 42
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR
{Xenopus laevis} SCOP: g.37.1.1
Length = 27
Score = 28.2 bits (62), Expect = 0.28
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 43 FSCSVCGKTFTRREHLRRHQQIH 65
+ C +C ++F + L RHQ++H
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVH 24
Score = 28.2 bits (62), Expect = 0.28
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 151 FSCSVCGKTFTRREHLRRHQQIH 173
+ C +C ++F + L RHQ++H
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVH 24
Score = 25.5 bits (55), Expect = 3.3
Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLHN 312
KC +C++ F +S L RH +R+H
Sbjct: 3 KCGLCERSFVEKSALSRH-QRVHK 25
Score = 25.1 bits (54), Expect = 4.4
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 7 FQCDVCNQGFVRKEHLVRHRK 27
++C +C + FV K L RH++
Sbjct: 2 YKCGLCERSFVEKSALSRHQR 22
Score = 25.1 bits (54), Expect = 4.4
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 115 FQCDVCNQGFVRKEHLVRHRK 135
++C +C + FV K L RH++
Sbjct: 2 YKCGLCERSFVEKSALSRHQR 22
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 31.7 bits (71), Expect = 0.40
Identities = 25/100 (25%), Positives = 33/100 (33%), Gaps = 19/100 (19%)
Query: 216 GSGNSSPRVKKEGDDGSEDPMEVELPPPEASSSPLNRPAAPAALTALGGIPLAVREKLMR 275
G S V +GD + P S + + PAA V +
Sbjct: 64 GDSAPSSSVNNDGD--------IITRPTSDSIAAVANATKPAA---------VVSDPQSM 106
Query: 276 PVIPRERPPKPIPKCDVCKKVFSRRSHLLRHLKRLHNIDP 315
V P P + C+VC FS S L HL+ H D
Sbjct: 107 KVTPIVNPSSYV--CNVCNARFSTMSALSEHLRSDHRDDA 144
Score = 28.6 bits (63), Expect = 4.1
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 104 QRIEGIDVVRP--FQCDVCNQGFVRKEHLVRHRKRAHDLDP 142
Q ++ +V P + C+VCN F L H + H D
Sbjct: 104 QSMKVTPIVNPSSYVCNVCNARFSTMSALSEHLRSDHRDDA 144
Score = 27.5 bits (60), Expect = 9.9
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 7 FQCDVCNQGFVRKEHLVRHRKRAHDLDP 34
+ C+VCN F L H + H D
Sbjct: 117 YVCNVCNARFSTMSALSEHLRSDHRDDA 144
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 27.5 bits (60), Expect = 0.67
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 37 GAEAKPFSCSVCGKTFTRREHLRRHQQIHARE 68
G+ KPF CS+C + +L+ H H+ E
Sbjct: 4 GSSGKPFKCSLCEYATRSKSNLKAHMNRHSTE 35
Score = 27.5 bits (60), Expect = 0.67
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 145 GAEAKPFSCSVCGKTFTRREHLRRHQQIHARE 176
G+ KPF CS+C + +L+ H H+ E
Sbjct: 4 GSSGKPFKCSLCEYATRSKSNLKAHMNRHSTE 35
>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA
binding protein; NMR {Escherichia coli} SCOP: k.12.1.1
PDB: 2ab7_A
Length = 29
Score = 27.3 bits (60), Expect = 0.79
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 48 CGKTFTRREHLRRHQQIH 65
CG++F R L RH++IH
Sbjct: 10 CGRSFNDRRKLNRHKKIH 27
Score = 27.3 bits (60), Expect = 0.79
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 156 CGKTFTRREHLRRHQQIH 173
CG++F R L RH++IH
Sbjct: 10 CGRSFNDRRKLNRHKKIH 27
>3din_C Preprotein translocase subunit SECY; protein translocation,
membrane protein, ATPase, ATP-binding membrane,
nucleotide-binding, protein transport; HET: ADP; 4.50A
{Thermotoga maritima MSB8}
Length = 431
Score = 30.2 bits (69), Expect = 0.92
Identities = 14/73 (19%), Positives = 30/73 (41%), Gaps = 21/73 (28%)
Query: 175 RELLQSSMDMSALTGLAGM-----GGEL-QMPLFAASLMPEIS-------MSSGGSGNSS 221
E+ + + + + G+ GG L + +F S+ P I+ ++S
Sbjct: 45 GEIFRRIAETAGVAGILSFYDVFTGGALSRFSVFTMSVTPYITASIILQLLAS-----VM 99
Query: 222 PRV---KKEGDDG 231
P + +EG++G
Sbjct: 100 PSLKEMLREGEEG 112
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, transcription; NMR {Homo sapiens}
Length = 29
Score = 26.7 bits (58), Expect = 1.3
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIHARE 68
KP C +CGK FT+ L H + H E
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGE 28
Score = 26.7 bits (58), Expect = 1.3
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIHARE 176
KP C +CGK FT+ L H + H E
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGE 28
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA
degradation, allosteric REGU; HET: ADP 1PE; 2.40A
{Saccharomyces cerevisiae}
Length = 802
Score = 29.9 bits (67), Expect = 1.3
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 8/50 (16%)
Query: 284 PKPIPKCDVCKKVF------SRRSHLLRHLKR-LHN-IDPPPSSRNKQVP 325
K + KC+ CKK F + SH++ HL HN + P S
Sbjct: 22 AKCVIKCNSCKKWFCNTKNGTSSSHIVNHLVLSHHNVVSLHPDSDLGDTV 71
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 27.6 bits (61), Expect = 1.5
Identities = 15/69 (21%), Positives = 24/69 (34%), Gaps = 11/69 (15%)
Query: 5 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 64
R C C+ + L H D A+ C CG+ ++ L+ H ++
Sbjct: 16 RLAVCQHCDLELSILK-LKEH----EDYCG-----ARTELCGNCGRNVLVKD-LKTHPEV 64
Query: 65 HARELLQSS 73
RE S
Sbjct: 65 CGREGSGPS 73
Score = 27.6 bits (61), Expect = 1.5
Identities = 15/69 (21%), Positives = 24/69 (34%), Gaps = 11/69 (15%)
Query: 113 RPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQI 172
R C C+ + L H D A+ C CG+ ++ L+ H ++
Sbjct: 16 RLAVCQHCDLELSILK-LKEH----EDYCG-----ARTELCGNCGRNVLVKD-LKTHPEV 64
Query: 173 HARELLQSS 181
RE S
Sbjct: 65 CGREGSGPS 73
>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} PDB: 2elw_A
Length = 37
Score = 25.9 bits (56), Expect = 2.3
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 290 CDVCKKVFSRRSHLLRHLKRLHNI 313
C CKK +S +L++H++ H+
Sbjct: 12 CRFCKKKYSDVKNLIKHIRDAHDP 35
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 28.6 bits (63), Expect = 2.4
Identities = 7/55 (12%), Positives = 16/55 (29%), Gaps = 4/55 (7%)
Query: 14 QGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARE 68
+ ++++ H + +L E K + E LR +
Sbjct: 184 EDYMKRLHSMSQETIHRNLARGE----KRLQREKSEQVLDNPEDLRGPIHLSVLR 234
Score = 28.6 bits (63), Expect = 2.4
Identities = 7/55 (12%), Positives = 16/55 (29%), Gaps = 4/55 (7%)
Query: 122 QGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRHQQIHARE 176
+ ++++ H + +L E K + E LR +
Sbjct: 184 EDYMKRLHSMSQETIHRNLARGE----KRLQREKSEQVLDNPEDLRGPIHLSVLR 234
>2xdq_B Light-independent protochlorophyllide reductase S; oxidoreductase,
DPOR, (bacterio)chlorophyll biosynthesis,
photosynthesis; 2.40A {Thermosynechococcus elongatus}
Length = 511
Score = 29.0 bits (65), Expect = 2.6
Identities = 10/42 (23%), Positives = 16/42 (38%)
Query: 234 DPMEVELPPPEASSSPLNRPAAPAALTALGGIPLAVREKLMR 275
+ + + S+ + A L L IP VR K+ R
Sbjct: 442 GGHDTKAVIHKGLSADSDLTWTAAGLAELNKIPGFVRGKVKR 483
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay,
zinc-finger, ATP-binding, metal-BIN UPF2, UPF1,
helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A
2iyk_A
Length = 800
Score = 29.2 bits (65), Expect = 2.8
Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 8/50 (16%)
Query: 284 PKPIPKCDVCKKVF------SRRSHLLRHLKRLHN--IDPPPSSRNKQVP 325
P + C+ KK F + SH++ HL R + +
Sbjct: 17 PACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETV 66
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 25.6 bits (55), Expect = 2.9
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 37 GAEAKPFSCSVCGKTFTRREHLRRHQQIHARE 68
G+ KP+ C C + +L H + H E
Sbjct: 4 GSSGKPYKCPQCSYASAIKANLNVHLRKHTGE 35
Score = 25.6 bits (55), Expect = 2.9
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 145 GAEAKPFSCSVCGKTFTRREHLRRHQQIHARE 176
G+ KP+ C C + +L H + H E
Sbjct: 4 GSSGKPYKCPQCSYASAIKANLNVHLRKHTGE 35
>1wir_A Protein arginine N-methyltransferase 3; C2H2 zinc finger domain,
PRMT3, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: g.37.1.5
Length = 121
Score = 27.6 bits (61), Expect = 3.2
Identities = 9/45 (20%), Positives = 16/45 (35%)
Query: 289 KCDVCKKVFSRRSHLLRHLKRLHNIDPPPSSRNKQVPTYYLLKLL 333
C C ++F+ H K H + + Y +KL+
Sbjct: 17 PCLFCDRLFASAEETFSHCKLEHQFNIDSMVHKHGLEFYGYIKLI 61
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC),
C2H2, APO metal-binding, nucleus, phosphoprotein,
transcription, TRAN regulation; 1.80A {Homo sapiens}
Length = 48
Score = 25.5 bits (55), Expect = 4.1
Identities = 9/43 (20%), Positives = 18/43 (41%)
Query: 108 GIDVVRPFQCDVCNQGFVRKEHLVRHRKRAHDLDPPEGAEAKP 150
G D +P+ CD+C + + + L H +H + +
Sbjct: 1 GEDRDKPYACDICGKRYKNRPGLSYHYAHSHLAEEEGEDKEDS 43
Score = 25.1 bits (54), Expect = 5.7
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQ 63
KP++C +CGK + R L H
Sbjct: 6 KPYACDICGKRYKNRPGLSYHYA 28
Score = 25.1 bits (54), Expect = 5.7
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQ 171
KP++C +CGK + R L H
Sbjct: 6 KPYACDICGKRYKNRPGLSYHYA 28
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, transcription; NMR {Homo sapiens}
Length = 26
Score = 24.7 bits (53), Expect = 5.8
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 41 KPFSCSVCGKTFTRREHLRRHQQIH 65
KP+ C CGK F + L H + H
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHH 25
Score = 24.7 bits (53), Expect = 5.8
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 149 KPFSCSVCGKTFTRREHLRRHQQIH 173
KP+ C CGK F + L H + H
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHH 25
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 26.1 bits (56), Expect = 6.9
Identities = 14/57 (24%), Positives = 17/57 (29%), Gaps = 10/57 (17%)
Query: 7 FQCDVCNQGFVRK--EHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRH 61
C CN RK L +H + L C C K F + L H
Sbjct: 25 AVCPTCNV-VTRKTLVGLKKHMEVCQKLQDA-------LKCQHCRKQFKSKAGLNYH 73
Score = 26.1 bits (56), Expect = 6.9
Identities = 14/57 (24%), Positives = 17/57 (29%), Gaps = 10/57 (17%)
Query: 115 FQCDVCNQGFVRK--EHLVRHRKRAHDLDPPEGAEAKPFSCSVCGKTFTRREHLRRH 169
C CN RK L +H + L C C K F + L H
Sbjct: 25 AVCPTCNV-VTRKTLVGLKKHMEVCQKLQDA-------LKCQHCRKQFKSKAGLNYH 73
>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2
zinc fingers, beta-BETA-alpha, solution structure; NMR
{Saccharomyces cerevisiae}
Length = 64
Score = 25.0 bits (54), Expect = 8.4
Identities = 9/52 (17%), Positives = 15/52 (28%), Gaps = 3/52 (5%)
Query: 12 CNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSC--SVCGKTFTRREHLRRH 61
C + L RH + H + +P +C C + H
Sbjct: 9 CPESASSLFDLQRHLLKDH-VSQDFKHPMEPLACNWEDCDFLGDDTASIVNH 59
Score = 25.0 bits (54), Expect = 8.4
Identities = 9/52 (17%), Positives = 15/52 (28%), Gaps = 3/52 (5%)
Query: 120 CNQGFVRKEHLVRHRKRAHDLDPPEGAEAKPFSC--SVCGKTFTRREHLRRH 169
C + L RH + H + +P +C C + H
Sbjct: 9 CPESASSLFDLQRHLLKDH-VSQDFKHPMEPLACNWEDCDFLGDDTASIVNH 59
>1o65_A Hypothetical protein YIIM; structural genomics, unknown function;
2.33A {Escherichia coli} SCOP: b.58.1.2 PDB: 1o67_A
Length = 246
Score = 26.9 bits (59), Expect = 9.1
Identities = 8/77 (10%), Positives = 24/77 (31%), Gaps = 9/77 (11%)
Query: 207 MPEISMSSGGSGNSSPRVKKEGDDGSEDPMEVELPPPEASSSPLNR--------PAAPAA 258
+ ++ ++G G V G ++ P+E+ + +
Sbjct: 144 IAQLMQNTGKVGWLY-SVIAPGKVSADAPLELVSRVSDVTVQEAAAIAWHMPFDDDQYHR 202
Query: 259 LTALGGIPLAVREKLMR 275
L + G+ + + +
Sbjct: 203 LLSAAGLSKSWTRTMQK 219
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.415
Gapped
Lambda K H
0.267 0.0659 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,625,368
Number of extensions: 346953
Number of successful extensions: 2293
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2060
Number of HSP's successfully gapped: 929
Length of query: 348
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 254
Effective length of database: 4,077,219
Effective search space: 1035613626
Effective search space used: 1035613626
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.3 bits)