BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy4066
         (69 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2Y69|L Chain L, Bovine Heart Cytochrome C Oxidase Re-Refined With
          Molecular Oxygen
 pdb|2Y69|Y Chain Y, Bovine Heart Cytochrome C Oxidase Re-Refined With
          Molecular Oxygen
          Length = 63

 Score = 67.0 bits (162), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 39/61 (63%)

Query: 6  LAKTVRCFSTSAARASHAYSGPGQNLPFDTHNRYKLTLYFGLFMMTGFGVPFIAVRHQLL 65
          L +++R F+TS  R SH   GPG+N+PF   N+++L     LF  +GF  PF  VRHQLL
Sbjct: 2  LGQSIRRFTTSVVRRSHYEEGPGKNIPFSVENKWRLLAMMTLFFGSGFAAPFFIVRHQLL 61

Query: 66 K 66
          K
Sbjct: 62 K 62


>pdb|1OCC|L Chain L, Structure Of Bovine Heart Cytochrome C Oxidase At The
          Fully Oxidized State
 pdb|1OCC|Y Chain Y, Structure Of Bovine Heart Cytochrome C Oxidase At The
          Fully Oxidized State
 pdb|2OCC|L Chain L, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
          State
 pdb|2OCC|Y Chain Y, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
          State
 pdb|1OCO|L Chain L, Bovine Heart Cytochrome C Oxidase In Carbon
          Monoxide-bound State
 pdb|1OCO|Y Chain Y, Bovine Heart Cytochrome C Oxidase In Carbon
          Monoxide-bound State
 pdb|1OCR|L Chain L, Bovine Heart Cytochrome C Oxidase In The Fully Reduced
          State
 pdb|1OCR|Y Chain Y, Bovine Heart Cytochrome C Oxidase In The Fully Reduced
          State
 pdb|1OCZ|L Chain L, Bovine Heart Cytochrome C Oxidase In Azide-Bound State
 pdb|1OCZ|Y Chain Y, Bovine Heart Cytochrome C Oxidase In Azide-Bound State
 pdb|1V54|L Chain L, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
          State
 pdb|1V54|Y Chain Y, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
          State
 pdb|1V55|L Chain L, Bovine Heart Cytochrome C Oxidase At The Fully Reduced
          State
 pdb|1V55|Y Chain Y, Bovine Heart Cytochrome C Oxidase At The Fully Reduced
          State
 pdb|2DYR|L Chain L, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
          State
 pdb|2DYR|Y Chain Y, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
          State
 pdb|2DYS|L Chain L, Bovine Heart Cytochrome C Oxidase Modified By Dccd
 pdb|2DYS|Y Chain Y, Bovine Heart Cytochrome C Oxidase Modified By Dccd
 pdb|2EIJ|L Chain L, Bovine Heart Cytochrome C Oxidase In The Fully Reduced
          State
 pdb|2EIJ|Y Chain Y, Bovine Heart Cytochrome C Oxidase In The Fully Reduced
          State
 pdb|2EIK|L Chain L, Cadmium Ion Binding Structure Of Bovine Heart Cytochrome
          C Oxidase In The Fully Reduced State
 pdb|2EIK|Y Chain Y, Cadmium Ion Binding Structure Of Bovine Heart Cytochrome
          C Oxidase In The Fully Reduced State
 pdb|2EIL|L Chain L, Cadmium Ion Binding Structure Of Bovine Heart Cytochrome
          C Oxidase In The Fully Oxidized State
 pdb|2EIL|Y Chain Y, Cadmium Ion Binding Structure Of Bovine Heart Cytochrome
          C Oxidase In The Fully Oxidized State
 pdb|2EIM|L Chain L, Zinc Ion Binding Structure Of Bovine Heart Cytochrome C
          Oxidase In The Fully Reduced State
 pdb|2EIM|Y Chain Y, Zinc Ion Binding Structure Of Bovine Heart Cytochrome C
          Oxidase In The Fully Reduced State
 pdb|2EIN|L Chain L, Zinc Ion Binding Structure Of Bovine Heart Cytochrome C
          Oxidase In The Fully Oxidized State
 pdb|2EIN|Y Chain Y, Zinc Ion Binding Structure Of Bovine Heart Cytochrome C
          Oxidase In The Fully Oxidized State
 pdb|2ZXW|L Chain L, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
          State (1-S X-Ray Exposure Dataset)
 pdb|2ZXW|Y Chain Y, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
          State (1-S X-Ray Exposure Dataset)
 pdb|3ABL|L Chain L, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
          State (15-S X-Ray Exposure Dataset)
 pdb|3ABL|Y Chain Y, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
          State (15-S X-Ray Exposure Dataset)
 pdb|3ABM|L Chain L, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
          State (200-S X-Ray Exposure Dataset)
 pdb|3ABM|Y Chain Y, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
          State (200-S X-Ray Exposure Dataset)
 pdb|3ABK|L Chain L, Bovine Heart Cytochrome C Oxidase At The No-Bound Fully
          Reduced State (50k)
 pdb|3ABK|Y Chain Y, Bovine Heart Cytochrome C Oxidase At The No-Bound Fully
          Reduced State (50k)
 pdb|3AG1|L Chain L, Bovine Heart Cytochrome C Oxidase In The Carbon
          Monoxide-Bou Reduced State At 280 K
 pdb|3AG1|Y Chain Y, Bovine Heart Cytochrome C Oxidase In The Carbon
          Monoxide-Bou Reduced State At 280 K
 pdb|3AG2|L Chain L, Bovine Heart Cytochrome C Oxidase In The Carbon
          Monoxide-Bou Reduced State At 100 K
 pdb|3AG2|Y Chain Y, Bovine Heart Cytochrome C Oxidase In The Carbon
          Monoxide-Bou Reduced State At 100 K
 pdb|3AG3|L Chain L, Bovine Heart Cytochrome C Oxidase In The Nitric
          Oxide-Bound Reduced State At 100 K
 pdb|3AG3|Y Chain Y, Bovine Heart Cytochrome C Oxidase In The Nitric
          Oxide-Bound Reduced State At 100 K
 pdb|3AG4|L Chain L, Bovine Heart Cytochrome C Oxidase In The Cyanide
          Ion-Bound F Reduced State At 100 K
 pdb|3AG4|Y Chain Y, Bovine Heart Cytochrome C Oxidase In The Cyanide
          Ion-Bound F Reduced State At 100 K
 pdb|3ASN|L Chain L, Bovine Heart Cytochrome C Oxidase In The Fully Oxidized
          State Measured At 1.7470 Angstrom Wavelength
 pdb|3ASN|Y Chain Y, Bovine Heart Cytochrome C Oxidase In The Fully Oxidized
          State Measured At 1.7470 Angstrom Wavelength
 pdb|3ASO|L Chain L, Bovine Heart Cytochrome C Oxidase In The Fully Oxidized
          State Measured At 0.9 Angstrom Wavelength
 pdb|3ASO|Y Chain Y, Bovine Heart Cytochrome C Oxidase In The Fully Oxidized
          State Measured At 0.9 Angstrom Wavelength
 pdb|2YBB|W Chain W, Fitted Model For Bovine  Mitochondrial Supercomplex
          I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
          Length = 47

 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 23/47 (48%), Positives = 29/47 (61%)

Query: 21 SHAYSGPGQNLPFDTHNRYKLTLYFGLFMMTGFGVPFIAVRHQLLKS 67
          SH   GPG+N+PF   N+++L     LF  +GF  PF  VRHQLLK 
Sbjct: 1  SHYEEGPGKNIPFSVENKWRLLAMMTLFFGSGFAAPFFIVRHQLLKK 47


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.328    0.139    0.427 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,894,043
Number of Sequences: 62578
Number of extensions: 58106
Number of successful extensions: 105
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 103
Number of HSP's gapped (non-prelim): 2
length of query: 69
length of database: 14,973,337
effective HSP length: 39
effective length of query: 30
effective length of database: 12,532,795
effective search space: 375983850
effective search space used: 375983850
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 45 (21.9 bits)