BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4066
(69 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P80432|COX7C_RAT Cytochrome c oxidase subunit 7C, mitochondrial OS=Rattus
norvegicus GN=Cox7c PE=1 SV=2
Length = 63
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 40/62 (64%)
Query: 6 LAKTVRCFSTSAARASHAYSGPGQNLPFDTHNRYKLTLYFGLFMMTGFGVPFIAVRHQLL 65
L +++R F+TS R SH GPG+NLPF N+++L L ++ +GF PF VRHQLL
Sbjct: 2 LGQSIRRFTTSVVRRSHYEEGPGKNLPFSVENKWRLLLMMTVYFGSGFAAPFFIVRHQLL 61
Query: 66 KS 67
K
Sbjct: 62 KK 63
>sp|P00430|COX7C_BOVIN Cytochrome c oxidase subunit 7C, mitochondrial OS=Bos taurus
GN=COX7C PE=1 SV=3
Length = 63
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 39/61 (63%)
Query: 6 LAKTVRCFSTSAARASHAYSGPGQNLPFDTHNRYKLTLYFGLFMMTGFGVPFIAVRHQLL 65
L +++R F+TS R SH GPG+N+PF N+++L LF +GF PF VRHQLL
Sbjct: 2 LGQSIRRFTTSVVRRSHYEEGPGKNIPFSVENKWRLLAMMTLFFGSGFAAPFFIVRHQLL 61
Query: 66 K 66
K
Sbjct: 62 K 62
>sp|Q1W0Y2|COX7C_PIG Cytochrome c oxidase subunit 7C, mitochondrial OS=Sus scrofa
GN=COX7C PE=1 SV=1
Length = 63
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 42/65 (64%), Gaps = 8/65 (12%)
Query: 6 LAKTVRCFSTSAARASHAYSGPGQNLPFDTHNRYKL----TLYFGLFMMTGFGVPFIAVR 61
L +++R F+TS R SH GPG+NLPF N+++L TLYFG +GF PF VR
Sbjct: 2 LGQSIRRFTTSVVRRSHYEEGPGKNLPFSVENKWRLLAMMTLYFG----SGFAAPFFIVR 57
Query: 62 HQLLK 66
HQLLK
Sbjct: 58 HQLLK 62
>sp|Q53CG2|COX7C_MACSL Cytochrome c oxidase subunit 7C, mitochondrial OS=Macaca silenus
GN=COX7C PE=3 SV=1
Length = 63
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 39/62 (62%)
Query: 6 LAKTVRCFSTSAARASHAYSGPGQNLPFDTHNRYKLTLYFGLFMMTGFGVPFIAVRHQLL 65
L ++R F+TS R SH GPG+NLPF N++ L + LF + F VPF+ VRHQLL
Sbjct: 2 LGHSIRRFTTSVVRRSHYEEGPGKNLPFSVENKWTLLVKMCLFFGSAFSVPFLIVRHQLL 61
Query: 66 KS 67
K
Sbjct: 62 KQ 63
>sp|Q8SPI1|COX7C_MACFA Cytochrome c oxidase subunit 7C, mitochondrial OS=Macaca
fascicularis GN=COX7C PE=3 SV=1
Length = 63
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 39/62 (62%)
Query: 6 LAKTVRCFSTSAARASHAYSGPGQNLPFDTHNRYKLTLYFGLFMMTGFGVPFIAVRHQLL 65
L ++R F+TS R SH GPG+NLPF N++ L + LF + F VPF+ VRHQLL
Sbjct: 2 LGHSIRRFTTSVVRRSHYEEGPGKNLPFSVENKWTLLVKMCLFFGSAFSVPFLIVRHQLL 61
Query: 66 KS 67
K
Sbjct: 62 KQ 63
>sp|P17665|COX7C_MOUSE Cytochrome c oxidase subunit 7C, mitochondrial OS=Mus musculus
GN=Cox7c PE=1 SV=1
Length = 63
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 42/65 (64%), Gaps = 8/65 (12%)
Query: 6 LAKTVRCFSTSAARASHAYSGPGQNLPFDTHNRYKL----TLYFGLFMMTGFGVPFIAVR 61
L +++R F+TS R SH GPG+NLPF N+++L T+YFG +GF PF VR
Sbjct: 2 LGQSIRRFTTSVVRRSHYEEGPGKNLPFSVENKWRLLAMMTVYFG----SGFAAPFFIVR 57
Query: 62 HQLLK 66
HQLLK
Sbjct: 58 HQLLK 62
>sp|Q7YRK5|COX7C_TARSY Cytochrome c oxidase subunit 7C, mitochondrial OS=Tarsius
syrichta GN=COX7C PE=3 SV=1
Length = 63
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 37/58 (63%)
Query: 10 VRCFSTSAARASHAYSGPGQNLPFDTHNRYKLTLYFGLFMMTGFGVPFIAVRHQLLKS 67
VR F+TS R SH GPG+NLPF N+++L L++ +GF PF VRHQLLK
Sbjct: 6 VRRFTTSVVRRSHYEEGPGKNLPFSVENKWRLLAMMTLYLGSGFAAPFFIVRHQLLKK 63
>sp|Q53CF9|COX7C_SAISC Cytochrome c oxidase subunit 7C, mitochondrial OS=Saimiri
sciureus GN=COX7C PE=3 SV=1
Length = 63
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 40/61 (65%)
Query: 6 LAKTVRCFSTSAARASHAYSGPGQNLPFDTHNRYKLTLYFGLFMMTGFGVPFIAVRHQLL 65
L +++R F+TSA R SH GPG+NLPF N+++L L+ + F PF+ +RHQLL
Sbjct: 2 LGQSIRRFTTSAVRRSHYEEGPGKNLPFSVENKWRLLAMMCLYFGSAFATPFLILRHQLL 61
Query: 66 K 66
K
Sbjct: 62 K 62
>sp|P60025|COX7C_PANTR Cytochrome c oxidase subunit 7C, mitochondrial OS=Pan troglodytes
GN=COX7C PE=3 SV=1
Length = 63
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 39/62 (62%)
Query: 6 LAKTVRCFSTSAARASHAYSGPGQNLPFDTHNRYKLTLYFGLFMMTGFGVPFIAVRHQLL 65
L +++R F+TS R SH GPG+NLPF N++ L L+ + F PF+ VRHQLL
Sbjct: 2 LGQSIRRFTTSVVRRSHYEEGPGKNLPFSVENKWSLLAKMCLYFGSAFATPFLVVRHQLL 61
Query: 66 KS 67
K+
Sbjct: 62 KT 63
>sp|P61639|COX7C_PANPA Cytochrome c oxidase subunit 7C, mitochondrial OS=Pan paniscus
GN=COX7C PE=3 SV=1
Length = 63
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 39/62 (62%)
Query: 6 LAKTVRCFSTSAARASHAYSGPGQNLPFDTHNRYKLTLYFGLFMMTGFGVPFIAVRHQLL 65
L +++R F+TS R SH GPG+NLPF N++ L L+ + F PF+ VRHQLL
Sbjct: 2 LGQSIRRFTTSVVRRSHYEEGPGKNLPFSVENKWSLLAKMCLYFGSAFATPFLVVRHQLL 61
Query: 66 KS 67
K+
Sbjct: 62 KT 63
>sp|P15954|COX7C_HUMAN Cytochrome c oxidase subunit 7C, mitochondrial OS=Homo sapiens
GN=COX7C PE=1 SV=1
Length = 63
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 39/62 (62%)
Query: 6 LAKTVRCFSTSAARASHAYSGPGQNLPFDTHNRYKLTLYFGLFMMTGFGVPFIAVRHQLL 65
L +++R F+TS R SH GPG+NLPF N++ L L+ + F PF+ VRHQLL
Sbjct: 2 LGQSIRRFTTSVVRRSHYEEGPGKNLPFSVENKWSLLAKMCLYFGSAFATPFLVVRHQLL 61
Query: 66 KS 67
K+
Sbjct: 62 KT 63
>sp|P61638|COX7C_GORGO Cytochrome c oxidase subunit 7C, mitochondrial OS=Gorilla gorilla
gorilla GN=COX7C PE=3 SV=1
Length = 63
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 39/62 (62%)
Query: 6 LAKTVRCFSTSAARASHAYSGPGQNLPFDTHNRYKLTLYFGLFMMTGFGVPFIAVRHQLL 65
L +++R F+TS R SH GPG+NLPF N++ L L+ + F PF+ VRHQLL
Sbjct: 2 LGQSIRRFTTSVVRRSHYEEGPGKNLPFSVENKWSLLAKMCLYFGSAFATPFLVVRHQLL 61
Query: 66 KS 67
K+
Sbjct: 62 KT 63
>sp|Q8SQ81|COX7C_PONPY Cytochrome c oxidase subunit 7C, mitochondrial OS=Pongo pygmaeus
GN=COX7C PE=3 SV=1
Length = 63
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 39/62 (62%)
Query: 6 LAKTVRCFSTSAARASHAYSGPGQNLPFDTHNRYKLTLYFGLFMMTGFGVPFIAVRHQLL 65
L +++R F+TS R SH GPG+NLPF N++ L L+ + F PF+ VRHQLL
Sbjct: 2 LGQSIRRFTTSVVRRSHYEEGPGKNLPFSVENKWSLLAKMCLYFGSAFATPFLIVRHQLL 61
Query: 66 KS 67
K+
Sbjct: 62 KT 63
>sp|Q8SQ80|COX7C_PAPHA Cytochrome c oxidase subunit 7C, mitochondrial OS=Papio hamadryas
GN=COX7C PE=3 SV=1
Length = 63
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 38/62 (61%)
Query: 6 LAKTVRCFSTSAARASHAYSGPGQNLPFDTHNRYKLTLYFGLFMMTGFGVPFIAVRHQLL 65
L ++R F+TS R SH GPG+NLPF N++ L + L+ + F PF+ VRHQLL
Sbjct: 2 LGHSIRRFTTSVVRRSHYEEGPGKNLPFSVKNKWALLVKMSLYFGSAFATPFLIVRHQLL 61
Query: 66 KS 67
K
Sbjct: 62 KQ 63
>sp|P04039|COX8_YEAST Cytochrome c oxidase polypeptide VIII, mitochondrial
OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=COX8 PE=1 SV=2
Length = 78
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Query: 19 RASHAYSGPGQNLPFDTHNR---YKLTLYFGLFMMTGFGVPFIAVRHQLLKS 67
R+ H G +N+PF R Y L+ +FG F + GF VPF+A QL KS
Sbjct: 26 RSVHFKDGVYENIPFKVKGRKTPYALS-HFGFFAI-GFAVPFVACYVQLKKS 75
>sp|O14021|PRW1_SCHPO RbAp48-related WD40 repeat-containing protein prw1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=prw1 PE=1 SV=1
Length = 431
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 14 STSAARASHAYSGPGQNLPFDTHNRYKL 41
ST AR+ HA+SGP ++ F+ HN + L
Sbjct: 270 STKPARSVHAHSGPIHSVAFNPHNDFIL 297
>sp|P80334|COX7C_ONCMY Cytochrome c oxidase polypeptide VIIc (Fragment) OS=Oncorhynchus
mykiss PE=1 SV=1
Length = 25
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 21 SHAYSGPGQNLPFDTHNRYKL 41
SH GPGQNLPF N+ +L
Sbjct: 1 SHYSEGPGQNLPFSVQNKXRL 21
>sp|Q6NS23|TRM11_XENLA tRNA (guanine(10)-N2)-methyltransferase homolog OS=Xenopus laevis
GN=trmt11 PE=2 SV=1
Length = 478
Score = 29.6 bits (65), Expect = 5.6, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 19 RASHAYSGPGQNLPFDTHNRYKLTLYFGL 47
+ +A+ G GQNLP+ HN ++ + GL
Sbjct: 422 KYQYAHLGEGQNLPYKGHNSFREKYFSGL 450
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.328 0.139 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,979,625
Number of Sequences: 539616
Number of extensions: 734174
Number of successful extensions: 1357
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1340
Number of HSP's gapped (non-prelim): 18
length of query: 69
length of database: 191,569,459
effective HSP length: 41
effective length of query: 28
effective length of database: 169,445,203
effective search space: 4744465684
effective search space used: 4744465684
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)