RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy4066
         (69 letters)



>2y69_L Cytochrome C oxidase subunit 7C; electron transport, complex IV,
          proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV
          DMU; 1.95A {Bos taurus}
          Length = 63

 Score = 79.1 bits (195), Expect = 6e-22
 Identities = 29/61 (47%), Positives = 39/61 (63%)

Query: 6  LAKTVRCFSTSAARASHAYSGPGQNLPFDTHNRYKLTLYFGLFMMTGFGVPFIAVRHQLL 65
          L +++R F+TS  R SH   GPG+N+PF   N+++L     LF  +GF  PF  VRHQLL
Sbjct: 2  LGQSIRRFTTSVVRRSHYEEGPGKNIPFSVENKWRLLAMMTLFFGSGFAAPFFIVRHQLL 61

Query: 66 K 66
          K
Sbjct: 62 K 62


>1v54_L VIIIA, cytochrome C oxidase polypeptide VIIC; oxidoreductase;
          HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A
          {Bos taurus} SCOP: f.23.6.1 PDB: 1oco_L* 1occ_L*
          1ocz_L* 1ocr_L* 1v55_L* 2dyr_L* 2dys_L* 2eij_L* 2eik_L*
          2eil_L* 2eim_L* 2ein_L* 2occ_L* 2ybb_W* 2zxw_L* 3abk_L*
          3abl_L* 3abm_L* 3ag1_L* 3ag2_L* ...
          Length = 47

 Score = 65.6 bits (160), Expect = 8e-17
 Identities = 23/46 (50%), Positives = 29/46 (63%)

Query: 21 SHAYSGPGQNLPFDTHNRYKLTLYFGLFMMTGFGVPFIAVRHQLLK 66
          SH   GPG+N+PF   N+++L     LF  +GF  PF  VRHQLLK
Sbjct: 1  SHYEEGPGKNIPFSVENKWRLLAMMTLFFGSGFAAPFFIVRHQLLK 46


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 25.4 bits (55), Expect = 1.8
 Identities = 8/53 (15%), Positives = 16/53 (30%), Gaps = 7/53 (13%)

Query: 4   SRLAKTVRCFSTSAARASHAYSGPGQNLPFDTHNRYKLTLY--FGLFMMTGFG 54
            +  + ++ + T+   A   +     +  F         L   FG     G G
Sbjct: 117 VKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG-----GQG 164


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.328    0.139    0.427 

Gapped
Lambda     K      H
   0.267   0.0735    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,010,997
Number of extensions: 43607
Number of successful extensions: 103
Number of sequences better than 10.0: 1
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 5
Length of query: 69
Length of database: 6,701,793
Length adjustment: 39
Effective length of query: 30
Effective length of database: 5,612,874
Effective search space: 168386220
Effective search space used: 168386220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (23.4 bits)