RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4066
         (69 letters)



>d1v54l_ f.23.6.1 (L:) Mitochondrial cytochrome c oxidase subunit
          VIIc (aka VIIIa) {Cow (Bos taurus) [TaxId: 9913]}
          Length = 46

 Score = 63.2 bits (154), Expect = 2e-16
 Identities = 22/45 (48%), Positives = 28/45 (62%)

Query: 22 HAYSGPGQNLPFDTHNRYKLTLYFGLFMMTGFGVPFIAVRHQLLK 66
          H   GPG+N+PF   N+++L     LF  +GF  PF  VRHQLLK
Sbjct: 1  HYEEGPGKNIPFSVENKWRLLAMMTLFFGSGFAAPFFIVRHQLLK 45


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.139    0.427 

Gapped
Lambda     K      H
   0.267   0.0659    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 238,978
Number of extensions: 7952
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 2
Length of query: 69
Length of database: 2,407,596
Length adjustment: 37
Effective length of query: 32
Effective length of database: 1,899,586
Effective search space: 60786752
Effective search space used: 60786752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (22.0 bits)