BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy4067
         (1384 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|66517310|ref|XP_625037.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 isoform 1
            [Apis mellifera]
          Length = 1134

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 196/265 (73%), Positives = 232/265 (87%), Gaps = 4/265 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GLVPYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMYNLVY Q PMV+S+TI + N
Sbjct: 671  GLVPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYNLVYPQTPMVKSRTIELIN 730

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNATIAVMSYSGYDIEDALI+NKAS+DRGFGRCLVYRN+KC LK+Y NQT+DR
Sbjct: 731  FDKLPAGQNATIAVMSYSGYDIEDALILNKASIDRGFGRCLVYRNAKCTLKRYANQTYDR 790

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT----P 1088
            I+GPL++A+T+K V++H  +D DGI APGE +  R+V+VNKS P  ++  ++        
Sbjct: 791  IMGPLIDANTKKSVWKHEIIDSDGIAAPGEMVENRKVMVNKSSPAANIGPVNSGNVQTQT 850

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
            EYK+VPV +KG VP+Y+EKV++SSN+EDAFLIK+LLRQTRRPEIGDKFSSRHGQKGV+GL
Sbjct: 851  EYKDVPVVFKGPVPAYIEKVMISSNAEDAFLIKLLLRQTRRPEIGDKFSSRHGQKGVVGL 910

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            IVEQEDMPFN+ GICPD+IMNPHG 
Sbjct: 911  IVEQEDMPFNDYGICPDMIMNPHGF 935



 Score =  338 bits (868), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 161/226 (71%), Positives = 189/226 (83%), Gaps = 2/226 (0%)

Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNS 1206
            G +VE   +  N+S   P   + P         TEYK+VPV +KG VP+Y+EKV++SSN+
Sbjct: 819  GEMVENRKVMVNKSS--PAANIGPVNSGNVQTQTEYKDVPVVFKGPVPAYIEKVMISSNA 876

Query: 1207 EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYP 1266
            EDAFLIK+LLRQTRRPEIGDKFSSRHGQKGV+GLIVEQEDMPFN+ GICPD+IMNPHG+P
Sbjct: 877  EDAFLIKLLLRQTRRPEIGDKFSSRHGQKGVVGLIVEQEDMPFNDYGICPDMIMNPHGFP 936

Query: 1267 SRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITG 1326
            SRMTVGKLIELLAGKAG+++G +  GTAFGG+K+ DV  EL++HG+NY GKD FYSGITG
Sbjct: 937  SRMTVGKLIELLAGKAGVIKGEFHYGTAFGGSKVEDVCAELVKHGFNYLGKDFFYSGITG 996

Query: 1327 EALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
            E L+AYIYSGPVYYQKLKHMVQDK+HAR+RGPR VLTRQPTG R K
Sbjct: 997  EPLQAYIYSGPVYYQKLKHMVQDKMHARARGPRAVLTRQPTGGRAK 1042



 Score =  261 bits (666), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 130/209 (62%), Positives = 162/209 (77%), Gaps = 4/209 (1%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVNHM 192
           +D  DY+ N   K+L  A + +    + LF     ++   IADK IPKIKAAQFDIV HM
Sbjct: 352 VDDRDYYGN---KRLELAGSLLSLMFEDLFKRFNWELK-QIADKNIPKIKAAQFDIVKHM 407

Query: 193 RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVS 252
           RQD ITN L  AI +GNWTI+RFKMER GVTQVLSRLSYIS LGMMTR+NSQFEKTRKVS
Sbjct: 408 RQDQITNGLAFAISSGNWTIKRFKMERHGVTQVLSRLSYISALGMMTRVNSQFEKTRKVS 467

Query: 253 GPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMF 312
           GPRSLQ SQWGMLCPSDTPEGE CGLVKNLALMTHITTE DE+ ++++ +N+G+E++ + 
Sbjct: 468 GPRSLQPSQWGMLCPSDTPEGEGCGLVKNLALMTHITTEIDEEPIIRLAFNLGVENVNIL 527

Query: 313 NGEELSSPGVYLVFVNGILAGITCHHKEV 341
            GEE+++  VY+VF+NG + GI  +++ +
Sbjct: 528 GGEEINNKNVYMVFLNGNILGIVKNYQRL 556



 Score =  187 bits (474), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 93/136 (68%), Positives = 103/136 (75%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G + F+DFL +G IEYLDVNE NDS IA +ES I    TTHLEI PFTLLGVCAG     
Sbjct: 618 GIRSFEDFLQDGLIEYLDVNEENDSSIAFNESHINEK-TTHLEIEPFTLLGVCAG----- 671

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    LVPYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMYNLVY Q PMV+
Sbjct: 672 ---------LVPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYNLVYPQTPMVK 722

Query: 808 SKTIRITNFHKLPAGK 823
           S+TI + NF KLPAG+
Sbjct: 723 SRTIELINFDKLPAGQ 738



 Score =  127 bits (319), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 58/96 (60%), Positives = 77/96 (80%)

Query: 439 KLRQKRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDM 498
           K +QKRF   K +  D+ +D L++  ++H+PVI+  FKMKA Y+A+MIR+++ A SD  +
Sbjct: 292 KRKQKRFSVIKSSITDEMKDALATNILSHVPVIDFNFKMKATYIALMIRKVMKAQSDGKL 351

Query: 499 LDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELKE 534
           +DDRDYYGNKRLELAGSLLSLMFED+FKRFN ELK+
Sbjct: 352 VDDRDYYGNKRLELAGSLLSLMFEDLFKRFNWELKQ 387



 Score =  110 bits (274), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 57/112 (50%), Positives = 76/112 (67%), Gaps = 12/112 (10%)

Query: 303 NIGIEHIAMFNGEELSS--PGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHE 360
           N+ I+ I   N + LS   P  Y+ ++N +  G+         P++EE FN TR TTPHE
Sbjct: 54  NVEIKKIVKANEKVLSDADPLFYVKYLN-VHVGL---------PDVEEGFNVTRSTTPHE 103

Query: 361 CRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKTEY 412
           CRLRDL YSAPITVDIEY RG Q +++++L+IGRMPIML+SS CVL  K+ +
Sbjct: 104 CRLRDLNYSAPITVDIEYIRGHQPIIKNNLLIGRMPIMLRSSNCVLTGKSHF 155



 Score =  102 bits (254), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 45/64 (70%), Positives = 56/64 (87%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           I+DKWKLV +FLK KGLVK HIDSF+YFINVEIKK+++AN  + SD DPLFY+KYL++HV
Sbjct: 25  IQDKWKLVPAFLKGKGLVKQHIDSFNYFINVEIKKIVKANEKVLSDADPLFYVKYLNVHV 84

Query: 172 GIAD 175
           G+ D
Sbjct: 85  GLPD 88


>gi|350420099|ref|XP_003492398.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Bombus
            impatiens]
          Length = 1130

 Score =  431 bits (1109), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 194/265 (73%), Positives = 232/265 (87%), Gaps = 4/265 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GLVPYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMYNLVY Q PMV+S+TI + N
Sbjct: 667  GLVPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYNLVYPQTPMVKSRTIELIN 726

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNAT+AVMSYSGYDIEDALI+NKAS+DRGFGRCL+YRN+KC LK+Y NQT+DR
Sbjct: 727  FDKLPAGQNATVAVMSYSGYDIEDALILNKASIDRGFGRCLIYRNAKCTLKRYANQTYDR 786

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT----P 1088
            I+GPL++++T+KPV++H  +D DGI APGE +  R+V+VNKS P  ++  ++        
Sbjct: 787  IMGPLIDSNTKKPVWKHDIIDSDGIAAPGEMVENRKVMVNKSSPAANIGPVNAGNVQTQT 846

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
            EYK+VPV +KG VP+Y+EKV++SSN+EDAFLIK+LLRQTRRPEIGDKFSSRHGQKGV GL
Sbjct: 847  EYKDVPVVFKGPVPAYVEKVMISSNAEDAFLIKLLLRQTRRPEIGDKFSSRHGQKGVTGL 906

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            IVEQEDMPFN+ GICPD+IMNPHG 
Sbjct: 907  IVEQEDMPFNDYGICPDMIMNPHGF 931



 Score =  338 bits (866), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 162/226 (71%), Positives = 188/226 (83%), Gaps = 2/226 (0%)

Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNS 1206
            G +VE   +  N+S   P   + P         TEYK+VPV +KG VP+Y+EKV++SSN+
Sbjct: 815  GEMVENRKVMVNKSS--PAANIGPVNAGNVQTQTEYKDVPVVFKGPVPAYVEKVMISSNA 872

Query: 1207 EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYP 1266
            EDAFLIK+LLRQTRRPEIGDKFSSRHGQKGV GLIVEQEDMPFN+ GICPD+IMNPHG+P
Sbjct: 873  EDAFLIKLLLRQTRRPEIGDKFSSRHGQKGVTGLIVEQEDMPFNDYGICPDMIMNPHGFP 932

Query: 1267 SRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITG 1326
            SRMTVGKLIELLAGKAG+++G +  GTAFGG+K+ DV  EL++HGYNY GKDIFYSGITG
Sbjct: 933  SRMTVGKLIELLAGKAGVIKGEFHYGTAFGGSKVKDVCNELVKHGYNYLGKDIFYSGITG 992

Query: 1327 EALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
            E L+AYIYSGPVYYQKLKHMVQDK+HAR+RGPR VLTRQPT  R K
Sbjct: 993  EPLQAYIYSGPVYYQKLKHMVQDKMHARARGPRAVLTRQPTEGRAK 1038



 Score =  261 bits (666), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 131/209 (62%), Positives = 162/209 (77%), Gaps = 4/209 (1%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVNHM 192
           ID  DY+ N   K+L  A + +    + LF     ++   IADK IPKIKAAQFDIV HM
Sbjct: 348 IDDRDYYGN---KRLELAGSLLSLMFEDLFKRFNWELK-QIADKNIPKIKAAQFDIVKHM 403

Query: 193 RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVS 252
           RQD ITN L  AI +GNWTI+RFKMER GVTQVLSRLSYIS LGMMTR+NSQFEKTRKVS
Sbjct: 404 RQDQITNGLAFAISSGNWTIKRFKMERHGVTQVLSRLSYISALGMMTRVNSQFEKTRKVS 463

Query: 253 GPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMF 312
           GPRSLQ SQWGMLCPSDTPEGE CGLVKNLALMTHITTE DE+ ++++ +N+G+E++ + 
Sbjct: 464 GPRSLQPSQWGMLCPSDTPEGEGCGLVKNLALMTHITTEIDEEPIVRLAFNLGVENVNIL 523

Query: 313 NGEELSSPGVYLVFVNGILAGITCHHKEV 341
            GEE+++  VY+VF+NG + GI  +++ +
Sbjct: 524 GGEEINNKKVYMVFLNGNILGIVKNYQRL 552



 Score =  188 bits (478), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 94/136 (69%), Positives = 103/136 (75%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G + F+DFL EG IEYLDVNE NDS IA +ES I    TTHLEI PFTLLGVCAG     
Sbjct: 614 GIRSFEDFLQEGLIEYLDVNEENDSSIAFNESHINEK-TTHLEIEPFTLLGVCAG----- 667

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    LVPYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMYNLVY Q PMV+
Sbjct: 668 ---------LVPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYNLVYPQTPMVK 718

Query: 808 SKTIRITNFHKLPAGK 823
           S+TI + NF KLPAG+
Sbjct: 719 SRTIELINFDKLPAGQ 734



 Score =  127 bits (318), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 57/96 (59%), Positives = 77/96 (80%)

Query: 439 KLRQKRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDM 498
           K +QKR+   K +  D+ +D L++  ++H+PVI+  FKMKA Y+A+MIR+++ A SD  +
Sbjct: 288 KRKQKRYSVIKASVTDEMKDILATNILSHVPVIDFNFKMKATYIALMIRKVMKAQSDGKL 347

Query: 499 LDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELKE 534
           +DDRDYYGNKRLELAGSLLSLMFED+FKRFN ELK+
Sbjct: 348 IDDRDYYGNKRLELAGSLLSLMFEDLFKRFNWELKQ 383



 Score =  110 bits (274), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 58/115 (50%), Positives = 77/115 (66%), Gaps = 12/115 (10%)

Query: 303 NIGIEHIAMFNGEELSS--PGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHE 360
           N+ I+ I   N + LS   P  Y+ ++N +  G+         P++EE FN TR TTPHE
Sbjct: 50  NVEIKKIIKANEKVLSDADPLFYVKYLN-VHVGL---------PDVEEGFNVTRSTTPHE 99

Query: 361 CRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKTEYTSS 415
           CRLRDL YSAPITVDIEY RG Q +++++L+IGRMPIML+SS CVL  K+ +  S
Sbjct: 100 CRLRDLNYSAPITVDIEYIRGHQPIIKNNLLIGRMPIMLRSSNCVLTGKSHFELS 154



 Score =  104 bits (259), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 48/77 (62%), Positives = 60/77 (77%)

Query: 99  VTDETSKLKDSPEIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDV 158
           +  ET   K    I+DKWKLV +FLK KGLVK HIDSF+YFINVEIKK+++AN  + SD 
Sbjct: 8   IKSETKYNKVVKHIQDKWKLVPAFLKGKGLVKQHIDSFNYFINVEIKKIIKANEKVLSDA 67

Query: 159 DPLFYLKYLDIHVGIAD 175
           DPLFY+KYL++HVG+ D
Sbjct: 68  DPLFYVKYLNVHVGLPD 84


>gi|340720183|ref|XP_003398521.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Bombus
            terrestris]
          Length = 1128

 Score =  431 bits (1109), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 194/265 (73%), Positives = 232/265 (87%), Gaps = 4/265 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GLVPYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMYNLVY Q PMV+S+TI + N
Sbjct: 665  GLVPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYNLVYPQTPMVKSRTIELIN 724

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNAT+AVMSYSGYDIEDALI+NKAS+DRGFGRCL+YRN+KC LK+Y NQT+DR
Sbjct: 725  FDKLPAGQNATVAVMSYSGYDIEDALILNKASIDRGFGRCLIYRNAKCTLKRYANQTYDR 784

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT----P 1088
            I+GPL++++T+KPV++H  +D DGI APGE +  R+V+VNKS P  ++  ++        
Sbjct: 785  IMGPLIDSNTKKPVWKHDIIDSDGIAAPGEMVENRKVMVNKSSPAANIGPVNAGNVQTQT 844

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
            EYK+VPV +KG VP+Y+EKV++SSN+EDAFLIK+LLRQTRRPEIGDKFSSRHGQKGV GL
Sbjct: 845  EYKDVPVVFKGPVPAYVEKVMISSNAEDAFLIKLLLRQTRRPEIGDKFSSRHGQKGVTGL 904

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            IVEQEDMPFN+ GICPD+IMNPHG 
Sbjct: 905  IVEQEDMPFNDYGICPDMIMNPHGF 929



 Score =  338 bits (868), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 163/226 (72%), Positives = 188/226 (83%), Gaps = 2/226 (0%)

Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNS 1206
            G +VE   +  N+S   P   + P         TEYK+VPV +KG VP+Y+EKV++SSN+
Sbjct: 813  GEMVENRKVMVNKSS--PAANIGPVNAGNVQTQTEYKDVPVVFKGPVPAYVEKVMISSNA 870

Query: 1207 EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYP 1266
            EDAFLIK+LLRQTRRPEIGDKFSSRHGQKGV GLIVEQEDMPFN+ GICPD+IMNPHG+P
Sbjct: 871  EDAFLIKLLLRQTRRPEIGDKFSSRHGQKGVTGLIVEQEDMPFNDYGICPDMIMNPHGFP 930

Query: 1267 SRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITG 1326
            SRMTVGKLIELLAGKAG+++G +  GTAFGG+K+ DV  EL++HGYNY GKDIFYSGITG
Sbjct: 931  SRMTVGKLIELLAGKAGVIKGEFHYGTAFGGSKVKDVCNELVKHGYNYLGKDIFYSGITG 990

Query: 1327 EALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
            E L+AYIYSGPVYYQKLKHMVQDK+HARSRGPR VLTRQPT  R K
Sbjct: 991  EPLQAYIYSGPVYYQKLKHMVQDKMHARSRGPRAVLTRQPTEGRAK 1036



 Score =  260 bits (664), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 130/209 (62%), Positives = 162/209 (77%), Gaps = 4/209 (1%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVNHM 192
           +D  DY+ N   K+L  A + +    + LF     ++   IADK IPKIKAAQFDIV HM
Sbjct: 346 VDDRDYYGN---KRLELAGSLLSLMFEDLFKRFNWELK-QIADKNIPKIKAAQFDIVKHM 401

Query: 193 RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVS 252
           RQD ITN L  AI +GNWTI+RFKMER GVTQVLSRLSYIS LGMMTR+NSQFEKTRKVS
Sbjct: 402 RQDQITNGLAFAISSGNWTIKRFKMERHGVTQVLSRLSYISALGMMTRVNSQFEKTRKVS 461

Query: 253 GPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMF 312
           GPRSLQ SQWGMLCPSDTPEGE CGLVKNLALMTHITTE DE+ ++++ +N+G+E++ + 
Sbjct: 462 GPRSLQPSQWGMLCPSDTPEGEGCGLVKNLALMTHITTEIDEEPIVRLAFNLGVENVNIL 521

Query: 313 NGEELSSPGVYLVFVNGILAGITCHHKEV 341
            GEE+++  VY+VF+NG + GI  +++ +
Sbjct: 522 GGEEINNKKVYMVFLNGNILGIVKNYQRL 550



 Score =  188 bits (477), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 94/136 (69%), Positives = 103/136 (75%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G + F+DFL EG IEYLDVNE NDS IA +ES I    TTHLEI PFTLLGVCAG     
Sbjct: 612 GIRSFEDFLQEGLIEYLDVNEENDSSIAFNESHINEK-TTHLEIEPFTLLGVCAG----- 665

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    LVPYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMYNLVY Q PMV+
Sbjct: 666 ---------LVPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYNLVYPQTPMVK 716

Query: 808 SKTIRITNFHKLPAGK 823
           S+TI + NF KLPAG+
Sbjct: 717 SRTIELINFDKLPAGQ 732



 Score =  127 bits (318), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 57/96 (59%), Positives = 77/96 (80%)

Query: 439 KLRQKRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDM 498
           K +QKR+   K +  D+ +D L++  ++H+PVI+  FKMKA Y+A+MIR+++ A SD  +
Sbjct: 286 KRKQKRYSVIKSSVTDEMKDILATNILSHVPVIDFNFKMKATYIALMIRKVMKAQSDGKL 345

Query: 499 LDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELKE 534
           +DDRDYYGNKRLELAGSLLSLMFED+FKRFN ELK+
Sbjct: 346 VDDRDYYGNKRLELAGSLLSLMFEDLFKRFNWELKQ 381



 Score =  110 bits (274), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 58/115 (50%), Positives = 77/115 (66%), Gaps = 12/115 (10%)

Query: 303 NIGIEHIAMFNGEELSS--PGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHE 360
           N+ I+ I   N + LS   P  Y+ ++N +  G+         P++EE FN TR TTPHE
Sbjct: 48  NVEIKKIIKANEKVLSDADPLFYVKYLN-VHVGL---------PDVEEGFNVTRSTTPHE 97

Query: 361 CRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKTEYTSS 415
           CRLRDL YSAPITVDIEY RG Q +++++L+IGRMPIML+SS CVL  K+ +  S
Sbjct: 98  CRLRDLNYSAPITVDIEYIRGHQPIIKNNLLIGRMPIMLRSSNCVLTGKSHFELS 152



 Score =  104 bits (259), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 48/77 (62%), Positives = 60/77 (77%)

Query: 99  VTDETSKLKDSPEIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDV 158
           +  ET   K    I+DKWKLV +FLK KGLVK HIDSF+YFINVEIKK+++AN  + SD 
Sbjct: 6   IKSETKYNKVVKHIQDKWKLVPAFLKGKGLVKQHIDSFNYFINVEIKKIIKANEKVLSDA 65

Query: 159 DPLFYLKYLDIHVGIAD 175
           DPLFY+KYL++HVG+ D
Sbjct: 66  DPLFYVKYLNVHVGLPD 82


>gi|380017785|ref|XP_003692825.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Apis florea]
          Length = 1134

 Score =  431 bits (1107), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 195/265 (73%), Positives = 231/265 (87%), Gaps = 4/265 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GLVPYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMYNLVY Q PMV+S+TI + N
Sbjct: 671  GLVPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYNLVYPQTPMVKSRTIELIN 730

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNATIAVMSYSGYDIEDALI+NKAS+DRGFGRCLVYRN+KC LK+Y NQT+DR
Sbjct: 731  FDKLPAGQNATIAVMSYSGYDIEDALILNKASIDRGFGRCLVYRNAKCTLKRYANQTYDR 790

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT----P 1088
            I+GPL++ +T+K V++H  +D DGI APGE +  R+V+VNKS P  ++  ++        
Sbjct: 791  IMGPLIDGNTKKSVWKHEIIDSDGIAAPGEMVENRKVMVNKSSPAANIGPVNSGNVQTQT 850

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
            EYK+VPV +KG VP+Y+EKV++SSN+EDAFLIK+LLRQTRRPEIGDKFSSRHGQKGV+GL
Sbjct: 851  EYKDVPVVFKGPVPAYIEKVMISSNAEDAFLIKLLLRQTRRPEIGDKFSSRHGQKGVVGL 910

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            IVEQEDMPFN+ GICPD+IMNPHG 
Sbjct: 911  IVEQEDMPFNDYGICPDMIMNPHGF 935



 Score =  338 bits (868), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 161/226 (71%), Positives = 189/226 (83%), Gaps = 2/226 (0%)

Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNS 1206
            G +VE   +  N+S   P   + P         TEYK+VPV +KG VP+Y+EKV++SSN+
Sbjct: 819  GEMVENRKVMVNKSS--PAANIGPVNSGNVQTQTEYKDVPVVFKGPVPAYIEKVMISSNA 876

Query: 1207 EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYP 1266
            EDAFLIK+LLRQTRRPEIGDKFSSRHGQKGV+GLIVEQEDMPFN+ GICPD+IMNPHG+P
Sbjct: 877  EDAFLIKLLLRQTRRPEIGDKFSSRHGQKGVVGLIVEQEDMPFNDYGICPDMIMNPHGFP 936

Query: 1267 SRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITG 1326
            SRMTVGKLIELLAGKAG+++G +  GTAFGG+K+ DV  EL++HG+NY GKD FYSGITG
Sbjct: 937  SRMTVGKLIELLAGKAGVIKGEFHYGTAFGGSKVEDVCSELVKHGFNYLGKDFFYSGITG 996

Query: 1327 EALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
            E L+AYIYSGPVYYQKLKHMVQDK+HAR+RGPR VLTRQPTG R K
Sbjct: 997  EPLQAYIYSGPVYYQKLKHMVQDKMHARARGPRAVLTRQPTGGRAK 1042



 Score =  261 bits (666), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 130/209 (62%), Positives = 162/209 (77%), Gaps = 4/209 (1%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVNHM 192
           +D  DY+ N   K+L  A + +    + LF     ++   IADK IPKIKAAQFDIV HM
Sbjct: 352 VDDRDYYGN---KRLELAGSLLSLMFEDLFKRFNWELK-QIADKNIPKIKAAQFDIVKHM 407

Query: 193 RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVS 252
           RQD ITN L  AI +GNWTI+RFKMER GVTQVLSRLSYIS LGMMTR+NSQFEKTRKVS
Sbjct: 408 RQDQITNGLAFAISSGNWTIKRFKMERHGVTQVLSRLSYISALGMMTRVNSQFEKTRKVS 467

Query: 253 GPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMF 312
           GPRSLQ SQWGMLCPSDTPEGE CGLVKNLALMTHITTE DE+ ++++ +N+G+E++ + 
Sbjct: 468 GPRSLQPSQWGMLCPSDTPEGEGCGLVKNLALMTHITTEIDEEPIIRLAFNLGVENVNIL 527

Query: 313 NGEELSSPGVYLVFVNGILAGITCHHKEV 341
            GEE+++  VY+VF+NG + GI  +++ +
Sbjct: 528 GGEEINNKNVYMVFLNGNILGIVKNYQRL 556



 Score =  187 bits (474), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 93/136 (68%), Positives = 103/136 (75%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G + F+DFL +G IEYLDVNE NDS IA +ES I    TTHLEI PFTLLGVCAG     
Sbjct: 618 GIRSFEDFLQDGLIEYLDVNEENDSSIAFNESHINEK-TTHLEIEPFTLLGVCAG----- 671

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    LVPYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMYNLVY Q PMV+
Sbjct: 672 ---------LVPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYNLVYPQTPMVK 722

Query: 808 SKTIRITNFHKLPAGK 823
           S+TI + NF KLPAG+
Sbjct: 723 SRTIELINFDKLPAGQ 738



 Score =  125 bits (315), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 57/96 (59%), Positives = 77/96 (80%)

Query: 439 KLRQKRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDM 498
           K +QKR+   K +  D+ +D L++  ++H+PVI+  FKMKA Y+A+MIR+++ A SD  +
Sbjct: 292 KRKQKRYSVIKSSITDEMKDALATNILSHVPVIDFNFKMKATYIALMIRKVMKAQSDGKL 351

Query: 499 LDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELKE 534
           +DDRDYYGNKRLELAGSLLSLMFED+FKRFN ELK+
Sbjct: 352 VDDRDYYGNKRLELAGSLLSLMFEDLFKRFNWELKQ 387



 Score =  110 bits (274), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 57/112 (50%), Positives = 76/112 (67%), Gaps = 12/112 (10%)

Query: 303 NIGIEHIAMFNGEELSS--PGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHE 360
           N+ I+ I   N + LS   P  Y+ ++N +  G+         P++EE FN TR TTPHE
Sbjct: 54  NVEIKKIVKANEKVLSDADPLFYVKYLN-VHVGL---------PDVEEGFNVTRSTTPHE 103

Query: 361 CRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKTEY 412
           CRLRDL YSAPITVDIEY RG Q +++++L+IGRMPIML+SS CVL  K+ +
Sbjct: 104 CRLRDLNYSAPITVDIEYIRGHQPIIKNNLLIGRMPIMLRSSNCVLTGKSHF 155



 Score =  102 bits (254), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 45/64 (70%), Positives = 56/64 (87%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           I+DKWKLV +FLK KGLVK HIDSF+YFINVEIKK+++AN  + SD DPLFY+KYL++HV
Sbjct: 25  IQDKWKLVPAFLKGKGLVKQHIDSFNYFINVEIKKIVKANEKVLSDADPLFYVKYLNVHV 84

Query: 172 GIAD 175
           G+ D
Sbjct: 85  GLPD 88


>gi|125843259|ref|XP_690811.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 isoform 2
            [Danio rerio]
          Length = 1130

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 193/264 (73%), Positives = 234/264 (88%), Gaps = 4/264 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMY L Y QRPMV++KTI + +
Sbjct: 667  GLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQRPMVKTKTIELID 726

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNAT+AVMSYSGYDIEDAL++NKASLDRGFGRCLVY+N+KC L++Y NQT D+
Sbjct: 727  FEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLRRYTNQTFDK 786

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT----P 1088
            ++GP+L+A+TRKP++RH  LD DGI +PGE++  +QVLVNKSMPT++ + +  +     P
Sbjct: 787  VMGPMLDAETRKPIWRHSILDADGICSPGEKVENKQVLVNKSMPTVTQTPLEGSAQPGQP 846

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
            +Y+EVPVSYKG+  SY+EKV++SSN+EDAFL+K+LLRQTRRPEIGDKFSSRHGQKGV GL
Sbjct: 847  QYREVPVSYKGATDSYIEKVMISSNAEDAFLVKILLRQTRRPEIGDKFSSRHGQKGVCGL 906

Query: 1149 IVEQEDMPFNESGICPDIIMNPHG 1172
            IV QEDMPF +SGICPDIIMNPHG
Sbjct: 907  IVPQEDMPFCDSGICPDIIMNPHG 930



 Score =  322 bits (826), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 174/308 (56%), Positives = 213/308 (69%), Gaps = 24/308 (7%)

Query: 1079 SVSAISMATPEYKEVPVSYKGSVPSYLEKVLVSSNSE-----------DAFLIKMLLRQT 1127
            +V+ +S +  + ++  V  K S+     + LV  N++           D  +  ML  +T
Sbjct: 737  TVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLRRYTNQTFDKVMGPMLDAET 796

Query: 1128 RRPEIGDKFSSRHGQKGVIGLI-----VEQEDMPFNESGICPDIIMNPHGLKGCDRITEY 1182
            R+P        RH      G+      VE + +  N+S   P +   P          +Y
Sbjct: 797  RKP------IWRHSILDADGICSPGEKVENKQVLVNKS--MPTVTQTPLEGSAQPGQPQY 848

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            +EVPVSYKG+  SY+EKV++SSN+EDAFL+K+LLRQTRRPEIGDKFSSRHGQKGV GLIV
Sbjct: 849  REVPVSYKGATDSYIEKVMISSNAEDAFLVKILLRQTRRPEIGDKFSSRHGQKGVCGLIV 908

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF +SGICPDIIMNPHGYPSRMTVGKLIELLAGKAG+++G +  GTAFGG+K+ D
Sbjct: 909  PQEDMPFCDSGICPDIIMNPHGYPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSKVKD 968

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
            V E+LIR+GYNYQGKD   SGITGE LEAYIY GPVYYQKLKHMV DK+HAR+RGPR VL
Sbjct: 969  VCEDLIRYGYNYQGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVL 1028

Query: 1363 TRQPTGRR 1370
            TRQPT  R
Sbjct: 1029 TRQPTEGR 1036



 Score =  259 bits (661), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 124/209 (59%), Positives = 162/209 (77%), Gaps = 4/209 (1%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVNHM 192
           +D  DY+ N  ++   Q  + ++ D+    + K+      IAD+IIPK +AAQFD+V HM
Sbjct: 348 VDDRDYYGNKRLELAGQLLSLLFEDL----FKKFNSELKKIADQIIPKQRAAQFDVVKHM 403

Query: 193 RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVS 252
           RQD ITN +  AI TGNW+++RFKM+RQGVTQVLSRLS+IS LGMMTRI+SQFEKTRKVS
Sbjct: 404 RQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSFISALGMMTRISSQFEKTRKVS 463

Query: 253 GPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMF 312
           GPRSLQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT+ ++  ++K+ +N+G+E + + 
Sbjct: 464 GPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKLAFNLGVEDVNLL 523

Query: 313 NGEELSSPGVYLVFVNGILAGITCHHKEV 341
            GEELS P V+LVF+NG + G+   H+++
Sbjct: 524 CGEELSYPTVFLVFLNGNILGVIRDHQKL 552



 Score =  179 bits (454), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 87/136 (63%), Positives = 102/136 (75%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G++ F+DFL+E  +EYLDVNE ND +IA+ E  I    TTHLEI PFTLLGVCAG     
Sbjct: 614 GYRTFEDFLHESLVEYLDVNEENDCNIALYEHMISKD-TTHLEIEPFTLLGVCAG----- 667

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMY L Y QRPMV+
Sbjct: 668 ---------LIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQRPMVK 718

Query: 808 SKTIRITNFHKLPAGK 823
           +KTI + +F KLPAG+
Sbjct: 719 TKTIELIDFEKLPAGQ 734



 Score =  117 bits (292), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 55/94 (58%), Positives = 75/94 (79%), Gaps = 1/94 (1%)

Query: 441 RQKRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLD 500
           RQ+ +   KKT +++AR+ L+ST + H+PV    F+ K +YLAVM+RR++LA  D + +D
Sbjct: 291 RQRMWGGPKKTKMEEARELLASTILTHVPVKEFNFRAKCIYLAVMVRRVILAQGD-NKVD 349

Query: 501 DRDYYGNKRLELAGSLLSLMFEDVFKRFNSELKE 534
           DRDYYGNKRLELAG LLSL+FED+FK+FNSELK+
Sbjct: 350 DRDYYGNKRLELAGQLLSLLFEDLFKKFNSELKK 383



 Score =  115 bits (288), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/111 (56%), Positives = 79/111 (71%), Gaps = 14/111 (12%)

Query: 303 NIGIEHIAMFNGEELSS---PGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPH 359
           N+ I+ I   N E+++S   P  YL ++N I  G+         P++EESFN TR  +PH
Sbjct: 50  NVEIKKIMKAN-EKITSDADPMWYLKYLN-IYVGM---------PDVEESFNVTRPVSPH 98

Query: 360 ECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
           ECRLRD+TYSAPITVDIEYTRGSQR++R+ L IGRMPIML+SS CVL  KT
Sbjct: 99  ECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKT 149



 Score = 97.4 bits (241), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 43/64 (67%), Positives = 55/64 (85%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           + +KWKL+ +FLK KGLVK HIDSF+YFINVEIKK+M+AN  I SD DP++YLKYL+I+V
Sbjct: 21  VEEKWKLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKITSDADPMWYLKYLNIYV 80

Query: 172 GIAD 175
           G+ D
Sbjct: 81  GMPD 84


>gi|363727935|ref|XP_416307.3| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Gallus
            gallus]
          Length = 1132

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 193/265 (72%), Positives = 234/265 (88%), Gaps = 4/265 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMY L Y Q+PMV++KTI + +
Sbjct: 669  GLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELID 728

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNAT+AVMSYSGYDIEDAL++NKASLDRGFGRCLVY+N+KC LK+Y NQT D+
Sbjct: 729  FEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDK 788

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT----P 1088
            ++GP+L+A TRKP++RH  LD DGI +PGE++  +QVLVNKSMPT++ + +  ++    P
Sbjct: 789  VMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQTPLEGSSVPQQP 848

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
            +YK+VPV+YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GL
Sbjct: 849  QYKDVPVTYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGL 908

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            IV QEDMPF ++GICPDIIMNPHG 
Sbjct: 909  IVPQEDMPFCDTGICPDIIMNPHGF 933



 Score =  322 bits (825), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 175/309 (56%), Positives = 214/309 (69%), Gaps = 26/309 (8%)

Query: 1079 SVSAISMATPEYKEVPVSYKGSVPSYLEKVLVSSNSE-----------DAFLIKMLLRQT 1127
            +V+ +S +  + ++  V  K S+     + LV  N++           D  +  ML   T
Sbjct: 739  TVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLDAAT 798

Query: 1128 RRP----EIGDKFSSRHGQKGVI--GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITE 1181
            R+P    EI D         G+   G  VE + +  N+S   P +   P       +  +
Sbjct: 799  RKPIWRHEILDA-------DGICSPGEKVENKQVLVNKS--MPTVTQTPLEGSSVPQQPQ 849

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
            YK+VPV+YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GLI
Sbjct: 850  YKDVPVTYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLI 909

Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
            V QEDMPF ++GICPDIIMNPHG+PSRMTVGKLIELLAGKAG+++G +  GTAFGG+K+ 
Sbjct: 910  VPQEDMPFCDTGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSKVK 969

Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
            DV E+LIRHGYNY GKD   SGITGE LEAYIY GPVYYQKLKHMV DK+HAR+RGPR V
Sbjct: 970  DVCEDLIRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAV 1029

Query: 1362 LTRQPTGRR 1370
            LTRQPT  R
Sbjct: 1030 LTRQPTEGR 1038



 Score =  258 bits (659), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 124/209 (59%), Positives = 161/209 (77%), Gaps = 4/209 (1%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVNHM 192
           +D  DY+ N  ++   Q  + ++ D+    + K+      IAD++IPK +AAQFD+V HM
Sbjct: 350 VDDRDYYGNKRLELAGQLLSLLFEDL----FKKFNSELKKIADQVIPKQRAAQFDVVKHM 405

Query: 193 RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVS 252
           RQD ITN +  AI TGNW+++RFKM+RQGVTQVLSRLSYIS LGMMTRI+SQFEKTRKVS
Sbjct: 406 RQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVS 465

Query: 253 GPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMF 312
           GPRSLQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT+ ++  ++K+  N+G+E + + 
Sbjct: 466 GPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKLASNLGVEDVNLL 525

Query: 313 NGEELSSPGVYLVFVNGILAGITCHHKEV 341
            GEELS P V+LVF+NG + G+   H+++
Sbjct: 526 CGEELSYPNVFLVFLNGNILGVIRDHQKL 554



 Score =  182 bits (462), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 90/150 (60%), Positives = 107/150 (71%), Gaps = 18/150 (12%)

Query: 677 RPTFLNMHQ---FLGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAP 733
           +P   N H      G++ F+DFL+EG +EYLDVNE ND +IA+ E  I    TTHLEI P
Sbjct: 602 KPAVTNKHMEELAQGYRNFEDFLHEGLVEYLDVNEENDCNIALYEHTINKD-TTHLEIEP 660

Query: 734 FTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDT 793
           FTLLGVCAG              L+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDT
Sbjct: 661 FTLLGVCAG--------------LIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDT 706

Query: 794 LMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
           LMY L Y Q+PMV++KTI + +F KLPAG+
Sbjct: 707 LMYLLAYPQKPMVKTKTIELIDFEKLPAGQ 736



 Score =  114 bits (286), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 63/111 (56%), Positives = 78/111 (70%), Gaps = 14/111 (12%)

Query: 303 NIGIEHIAMFNGEELSS---PGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPH 359
           N+ I+ I   N E+++S   P  YL ++N I  G          P++EESFN TR  +PH
Sbjct: 52  NVEIKKIMKAN-EKVTSDADPMWYLKYLN-IYVGT---------PDVEESFNVTRPVSPH 100

Query: 360 ECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
           ECRLRD+TYSAPITVDIEYTRGSQR++R+ L IGRMPIML+SS CVL  KT
Sbjct: 101 ECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKT 151



 Score =  109 bits (272), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 52/94 (55%), Positives = 73/94 (77%), Gaps = 1/94 (1%)

Query: 441 RQKRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLD 500
           RQ+ +   KKT +++AR+ L+ST + H+ V    F+ K +Y AVM+RR++LA  + + +D
Sbjct: 293 RQRMWGGPKKTKMEEARELLASTILTHVLVKEFNFRAKCIYTAVMVRRVILAQGE-NKVD 351

Query: 501 DRDYYGNKRLELAGSLLSLMFEDVFKRFNSELKE 534
           DRDYYGNKRLELAG LLSL+FED+FK+FNSELK+
Sbjct: 352 DRDYYGNKRLELAGQLLSLLFEDLFKKFNSELKK 385



 Score = 95.5 bits (236), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 41/64 (64%), Positives = 54/64 (84%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           + +KW+L+ +FLK KGLVK HIDSF+YFINVEIKK+M+AN  + SD DP++YLKYL+I+V
Sbjct: 23  VEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMWYLKYLNIYV 82

Query: 172 GIAD 175
           G  D
Sbjct: 83  GTPD 86


>gi|449481884|ref|XP_002196633.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Taeniopygia
            guttata]
          Length = 1130

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 193/265 (72%), Positives = 234/265 (88%), Gaps = 4/265 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMY L Y Q+PMV++KTI + +
Sbjct: 667  GLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELID 726

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNAT+AVMSYSGYDIEDAL++NKASLDRGFGRCLVY+N+KC LK+Y NQT D+
Sbjct: 727  FEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDK 786

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT----P 1088
            ++GP+L+A TRKP++RH  LD DGI +PGE++  +QVLVNKSMPT++ + +  ++    P
Sbjct: 787  VMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQTPLEGSSVPQQP 846

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
            +YK+VPV+YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GL
Sbjct: 847  QYKDVPVTYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGL 906

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            IV QEDMPF ++GICPDIIMNPHG 
Sbjct: 907  IVPQEDMPFCDTGICPDIIMNPHGF 931



 Score =  322 bits (824), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 175/309 (56%), Positives = 214/309 (69%), Gaps = 26/309 (8%)

Query: 1079 SVSAISMATPEYKEVPVSYKGSVPSYLEKVLVSSNSE-----------DAFLIKMLLRQT 1127
            +V+ +S +  + ++  V  K S+     + LV  N++           D  +  ML   T
Sbjct: 737  TVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLDAAT 796

Query: 1128 RRP----EIGDKFSSRHGQKGVI--GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITE 1181
            R+P    EI D         G+   G  VE + +  N+S   P +   P       +  +
Sbjct: 797  RKPIWRHEILDA-------DGICSPGEKVENKQVLVNKS--MPTVTQTPLEGSSVPQQPQ 847

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
            YK+VPV+YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GLI
Sbjct: 848  YKDVPVTYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLI 907

Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
            V QEDMPF ++GICPDIIMNPHG+PSRMTVGKLIELLAGKAG+++G +  GTAFGG+K+ 
Sbjct: 908  VPQEDMPFCDTGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSKVK 967

Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
            DV E+LIRHGYNY GKD   SGITGE LEAYIY GPVYYQKLKHMV DK+HAR+RGPR V
Sbjct: 968  DVCEDLIRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAV 1027

Query: 1362 LTRQPTGRR 1370
            LTRQPT  R
Sbjct: 1028 LTRQPTEGR 1036



 Score =  258 bits (658), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 124/209 (59%), Positives = 161/209 (77%), Gaps = 4/209 (1%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVNHM 192
           +D  DY+ N  ++   Q  + ++ D+    + K+      IAD++IPK +AAQFD+V HM
Sbjct: 348 VDDRDYYGNKRLELAGQLLSLLFEDL----FKKFNSELKKIADQVIPKQRAAQFDVVKHM 403

Query: 193 RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVS 252
           RQD ITN +  AI TGNW+++RFKM+RQGVTQVLSRLSYIS LGMMTRI+SQFEKTRKVS
Sbjct: 404 RQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVS 463

Query: 253 GPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMF 312
           GPRSLQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT+ ++  ++K+  N+G+E + + 
Sbjct: 464 GPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKLASNLGVEDVNLL 523

Query: 313 NGEELSSPGVYLVFVNGILAGITCHHKEV 341
            GEELS P V+LVF+NG + G+   H+++
Sbjct: 524 CGEELSYPNVFLVFLNGNILGVIRDHQKL 552



 Score =  182 bits (463), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 90/150 (60%), Positives = 108/150 (72%), Gaps = 18/150 (12%)

Query: 677 RPTFLNMHQ---FLGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAP 733
           +P   N H      G++ F+DFL+EG +EYLDVNE ND +IA+ E+ I    TTHLEI P
Sbjct: 600 KPAVTNKHMEELAQGYRNFEDFLHEGLVEYLDVNEENDCNIALYENTINKD-TTHLEIEP 658

Query: 734 FTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDT 793
           FTLLGVCAG              L+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDT
Sbjct: 659 FTLLGVCAG--------------LIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDT 704

Query: 794 LMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
           LMY L Y Q+PMV++KTI + +F KLPAG+
Sbjct: 705 LMYLLAYPQKPMVKTKTIELIDFEKLPAGQ 734



 Score =  114 bits (285), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 52/70 (74%), Positives = 60/70 (85%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQ 400
           V  P++EESFN TR  +PHECRLRD+TYSAPITVDIEYTRGSQR++R+ L IGRMPIML+
Sbjct: 80  VGTPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLR 139

Query: 401 SSKCVLRNKT 410
           SS CVL  KT
Sbjct: 140 SSNCVLTGKT 149



 Score =  109 bits (272), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 52/94 (55%), Positives = 73/94 (77%), Gaps = 1/94 (1%)

Query: 441 RQKRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLD 500
           RQ+ +   KKT +++AR+ L+ST + H+ V    F+ K +Y AVM+RR++LA  + + +D
Sbjct: 291 RQRMWGGPKKTKMEEARELLASTILTHVLVKEFNFRAKCIYTAVMVRRVILAQGE-NKVD 349

Query: 501 DRDYYGNKRLELAGSLLSLMFEDVFKRFNSELKE 534
           DRDYYGNKRLELAG LLSL+FED+FK+FNSELK+
Sbjct: 350 DRDYYGNKRLELAGQLLSLLFEDLFKKFNSELKK 383



 Score = 95.1 bits (235), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 41/64 (64%), Positives = 54/64 (84%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           + +KW+L+ +FLK KGLVK HIDSF+YFINVEIKK+M+AN  + SD DP++YLKYL+I+V
Sbjct: 21  VEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMWYLKYLNIYV 80

Query: 172 GIAD 175
           G  D
Sbjct: 81  GTPD 84


>gi|326912147|ref|XP_003202415.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like
            [Meleagris gallopavo]
          Length = 1129

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 193/265 (72%), Positives = 234/265 (88%), Gaps = 4/265 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMY L Y Q+PMV++KTI + +
Sbjct: 666  GLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELID 725

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNAT+AVMSYSGYDIEDAL++NKASLDRGFGRCLVY+N+KC LK+Y NQT D+
Sbjct: 726  FEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDK 785

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT----P 1088
            ++GP+L+A TRKP++RH  LD DGI +PGE++  +QVLVNKSMPT++ + +  ++    P
Sbjct: 786  VMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQTPLEGSSVPQQP 845

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
            +YK+VPV+YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GL
Sbjct: 846  QYKDVPVTYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGL 905

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            IV QEDMPF ++GICPDIIMNPHG 
Sbjct: 906  IVPQEDMPFCDTGICPDIIMNPHGF 930



 Score =  321 bits (823), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 175/309 (56%), Positives = 214/309 (69%), Gaps = 26/309 (8%)

Query: 1079 SVSAISMATPEYKEVPVSYKGSVPSYLEKVLVSSNSE-----------DAFLIKMLLRQT 1127
            +V+ +S +  + ++  V  K S+     + LV  N++           D  +  ML   T
Sbjct: 736  TVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLDAAT 795

Query: 1128 RRP----EIGDKFSSRHGQKGVI--GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITE 1181
            R+P    EI D         G+   G  VE + +  N+S   P +   P       +  +
Sbjct: 796  RKPIWRHEILDA-------DGICSPGEKVENKQVLVNKS--MPTVTQTPLEGSSVPQQPQ 846

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
            YK+VPV+YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GLI
Sbjct: 847  YKDVPVTYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLI 906

Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
            V QEDMPF ++GICPDIIMNPHG+PSRMTVGKLIELLAGKAG+++G +  GTAFGG+K+ 
Sbjct: 907  VPQEDMPFCDTGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSKVK 966

Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
            DV E+LIRHGYNY GKD   SGITGE LEAYIY GPVYYQKLKHMV DK+HAR+RGPR V
Sbjct: 967  DVCEDLIRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAV 1026

Query: 1362 LTRQPTGRR 1370
            LTRQPT  R
Sbjct: 1027 LTRQPTEGR 1035



 Score =  257 bits (657), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 124/209 (59%), Positives = 161/209 (77%), Gaps = 4/209 (1%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVNHM 192
           +D  DY+ N  ++   Q  + ++ D+    + K+      IAD++IPK +AAQFD+V HM
Sbjct: 347 VDDRDYYGNKRLELAGQLLSLLFEDL----FKKFNSELKKIADQVIPKQRAAQFDVVKHM 402

Query: 193 RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVS 252
           RQD ITN +  AI TGNW+++RFKM+RQGVTQVLSRLSYIS LGMMTRI+SQFEKTRKVS
Sbjct: 403 RQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVS 462

Query: 253 GPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMF 312
           GPRSLQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT+ ++  ++K+  N+G+E + + 
Sbjct: 463 GPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKLASNLGVEDVNLL 522

Query: 313 NGEELSSPGVYLVFVNGILAGITCHHKEV 341
            GEELS P V+LVF+NG + G+   H+++
Sbjct: 523 CGEELSYPNVFLVFLNGNILGVIRDHQKL 551



 Score =  182 bits (461), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 90/150 (60%), Positives = 107/150 (71%), Gaps = 18/150 (12%)

Query: 677 RPTFLNMHQ---FLGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAP 733
           +P   N H      G++ F+DFL+EG +EYLDVNE ND +IA+ E  I    TTHLEI P
Sbjct: 599 KPAVTNKHMEELAQGYRNFEDFLHEGLVEYLDVNEENDCNIALYEHTINKD-TTHLEIEP 657

Query: 734 FTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDT 793
           FTLLGVCAG              L+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDT
Sbjct: 658 FTLLGVCAG--------------LIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDT 703

Query: 794 LMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
           LMY L Y Q+PMV++KTI + +F KLPAG+
Sbjct: 704 LMYLLAYPQKPMVKTKTIELIDFEKLPAGQ 733



 Score =  114 bits (285), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 63/111 (56%), Positives = 78/111 (70%), Gaps = 14/111 (12%)

Query: 303 NIGIEHIAMFNGEELSS---PGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPH 359
           N+ I+ I   N E+++S   P  YL ++N I  G          P++EESFN TR  +PH
Sbjct: 49  NVEIKKIMKAN-EKVTSDADPMWYLKYLN-IYVGT---------PDVEESFNVTRPVSPH 97

Query: 360 ECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
           ECRLRD+TYSAPITVDIEYTRGSQR++R+ L IGRMPIML+SS CVL  KT
Sbjct: 98  ECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKT 148



 Score =  109 bits (272), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 52/94 (55%), Positives = 73/94 (77%), Gaps = 1/94 (1%)

Query: 441 RQKRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLD 500
           RQ+ +   KKT +++AR+ L+ST + H+ V    F+ K +Y AVM+RR++LA  + + +D
Sbjct: 290 RQRMWGGPKKTKMEEARELLASTILTHVLVKEFNFRAKCIYTAVMVRRVILAQGE-NKVD 348

Query: 501 DRDYYGNKRLELAGSLLSLMFEDVFKRFNSELKE 534
           DRDYYGNKRLELAG LLSL+FED+FK+FNSELK+
Sbjct: 349 DRDYYGNKRLELAGQLLSLLFEDLFKKFNSELKK 382



 Score = 96.7 bits (239), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 46/83 (55%), Positives = 64/83 (77%), Gaps = 5/83 (6%)

Query: 98  MVTDETSKLKDSPE-----IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANA 152
           M T+ T + K++ +     I++KW+L+ +FLK KGLVK HIDSF+YFINVEIKK+M+AN 
Sbjct: 1   MHTNHTLRNKEAQQAEWGYIKEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANE 60

Query: 153 NIYSDVDPLFYLKYLDIHVGIAD 175
            + SD DP++YLKYL+I+VG  D
Sbjct: 61  KVTSDADPMWYLKYLNIYVGTPD 83


>gi|417405955|gb|JAA49663.1| Putative rna polymerase i second largest subunit [Desmodus rotundus]
          Length = 1133

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 194/265 (73%), Positives = 232/265 (87%), Gaps = 4/265 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMY L Y Q+PMV++KTI +  
Sbjct: 670  GLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIE 729

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNAT+AVMSYSGYDIEDAL++NKASLDRGFGRCLVY+N+KC LK+Y NQT D+
Sbjct: 730  FEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDK 789

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT----P 1088
            ++GP+L+A TRKP++RH  LD DGI +PGE++  +QVLVNKSMPT++   +  +T    P
Sbjct: 790  VMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSTVPQQP 849

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
            +YK+VP++YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GL
Sbjct: 850  QYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGL 909

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            IV QEDMPF +SGICPDIIMNPHG 
Sbjct: 910  IVPQEDMPFCDSGICPDIIMNPHGF 934



 Score =  320 bits (819), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 149/190 (78%), Positives = 170/190 (89%)

Query: 1181 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1240
            +YK+VP++YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GL
Sbjct: 850  QYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGL 909

Query: 1241 IVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKL 1300
            IV QEDMPF +SGICPDIIMNPHG+PSRMTVGKLIELLAGKAG+++G +  GTAFGG+K+
Sbjct: 910  IVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSKV 969

Query: 1301 VDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRV 1360
             DV E+L+RHGYNY GKD   SGITGE LEAYIY GPVYYQKLKHMV DK+HAR+RGPR 
Sbjct: 970  KDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRA 1029

Query: 1361 VLTRQPTGRR 1370
            VLTRQPT  R
Sbjct: 1030 VLTRQPTEGR 1039



 Score =  259 bits (663), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 125/209 (59%), Positives = 161/209 (77%), Gaps = 4/209 (1%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVNHM 192
           +D  DY+ N  ++   Q  + ++ D+    + K+      IAD++IPK +AAQFD+V HM
Sbjct: 351 VDDRDYYGNKRLELAGQLLSLLFEDL----FKKFNSEMKKIADQVIPKQRAAQFDVVKHM 406

Query: 193 RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVS 252
           RQD ITN +  AI TGNW+++RFKM+RQGVTQVLSRLSYIS LGMMTRI+SQFEKTRKVS
Sbjct: 407 RQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVS 466

Query: 253 GPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMF 312
           GPRSLQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT+ ++  ++K+  N+G+E + + 
Sbjct: 467 GPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLL 526

Query: 313 NGEELSSPGVYLVFVNGILAGITCHHKEV 341
            GEELS P V+LVF+NG + G+   HK++
Sbjct: 527 CGEELSYPNVFLVFLNGNILGVIRDHKKL 555



 Score =  178 bits (452), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 106/217 (48%), Positives = 126/217 (58%), Gaps = 30/217 (13%)

Query: 621 FLFFLGGGGILPSIQRQTTCLLTLILFSLNGDGKRGARNSQQYCD-CPDGYSSG---CQP 676
           FL FL G  IL  I+     + T  L    G        S    D C    S G   C+P
Sbjct: 537 FLVFLNGN-ILGVIRDHKKLVNTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRP 595

Query: 677 -------RPTFLNMHQ---FLGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVT 726
                  +P   N H      G++ F+DFL+E  +EYLDVNE ND ++A+ E  I    T
Sbjct: 596 YIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNVALYEHTINKD-T 654

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           THLEI PFTLLGVCAG              L+PYPHHNQ+PRNTYQCAMGKQAMG IGYN
Sbjct: 655 THLEIEPFTLLGVCAG--------------LIPYPHHNQSPRNTYQCAMGKQAMGTIGYN 700

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
           Q+NRIDTLMY L Y Q+PMV++KTI +  F KLPAG+
Sbjct: 701 QRNRIDTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQ 737



 Score =  115 bits (288), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/111 (56%), Positives = 79/111 (71%), Gaps = 14/111 (12%)

Query: 303 NIGIEHIAMFNGEELSS---PGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPH 359
           N+ I+ I   N E+++S   P  YL ++N I  G+         P++EESFN TR  +PH
Sbjct: 52  NVEIKKIMKAN-EKVTSDADPMWYLKYLN-IYVGL---------PDVEESFNVTRPVSPH 100

Query: 360 ECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
           ECRLRD+TYSAPITVDIEYTRGSQR++R+ L IGRMPIML+SS CVL  KT
Sbjct: 101 ECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKT 151



 Score =  112 bits (281), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 70/86 (81%), Gaps = 1/86 (1%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           KKT +++AR+ L+ST + H+PV    F+ K +Y AVM+RR++LA  D + +DDRDYYGNK
Sbjct: 302 KKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQGD-NKVDDRDYYGNK 360

Query: 509 RLELAGSLLSLMFEDVFKRFNSELKE 534
           RLELAG LLSL+FED+FK+FNSE+K+
Sbjct: 361 RLELAGQLLSLLFEDLFKKFNSEMKK 386



 Score = 98.6 bits (244), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 42/66 (63%), Positives = 56/66 (84%)

Query: 110 PEIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDI 169
           P + +KW+L+ +FLK KGLVK HIDSF+YFINVEIKK+M+AN  + SD DP++YLKYL+I
Sbjct: 21  PTVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMWYLKYLNI 80

Query: 170 HVGIAD 175
           +VG+ D
Sbjct: 81  YVGLPD 86


>gi|402887513|ref|XP_003907136.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 isoform 1
            [Papio anubis]
          Length = 1133

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 194/265 (73%), Positives = 231/265 (87%), Gaps = 4/265 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQQNRIDTLMY L Y Q+PMV++KTI +  
Sbjct: 670  GLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQQNRIDTLMYLLAYPQKPMVKTKTIELIE 729

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNAT+AVMSYSGYDIEDAL++NKASLDRGFGRCLVY+N+KC LK+Y NQT D+
Sbjct: 730  FEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDK 789

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT----P 1088
            ++GP+L+A TRKP++RH  LD DGI +PGE++  +QVLVNKSMPT++   +  +     P
Sbjct: 790  VMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQP 849

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
            +YK+VP++YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GL
Sbjct: 850  QYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGL 909

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            IV QEDMPF +SGICPDIIMNPHG 
Sbjct: 910  IVPQEDMPFCDSGICPDIIMNPHGF 934



 Score =  320 bits (820), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 174/309 (56%), Positives = 214/309 (69%), Gaps = 26/309 (8%)

Query: 1079 SVSAISMATPEYKEVPVSYKGSVPSYLEKVLVSSNSE-----------DAFLIKMLLRQT 1127
            +V+ +S +  + ++  V  K S+     + LV  N++           D  +  ML   T
Sbjct: 740  TVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLDAAT 799

Query: 1128 RRP----EIGDKFSSRHGQKGVI--GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITE 1181
            R+P    EI D         G+   G  VE + +  N+S   P +   P       +  +
Sbjct: 800  RKPIWRHEILDA-------DGICSPGEKVENKQVLVNKS--MPTVTQIPLEGSNVPQQPQ 850

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
            YK+VP++YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GLI
Sbjct: 851  YKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLI 910

Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
            V QEDMPF +SGICPDIIMNPHG+PSRMTVGKLIELLAGKAG+++G +  GTAFGG+K+ 
Sbjct: 911  VPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSKVK 970

Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
            DV E+L+RHGYNY GKD   SGITGE LEAYIY GPVYYQKLKHMV DK+HAR+RGPR V
Sbjct: 971  DVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAV 1030

Query: 1362 LTRQPTGRR 1370
            LTRQPT  R
Sbjct: 1031 LTRQPTEGR 1039



 Score =  259 bits (662), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 125/209 (59%), Positives = 161/209 (77%), Gaps = 4/209 (1%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVNHM 192
           +D  DY+ N  ++   Q  + ++ D+    + K+      IAD++IPK +AAQFD+V HM
Sbjct: 351 VDDRDYYGNKRLELAGQLLSLLFEDL----FKKFNSEMKKIADQVIPKQRAAQFDVVKHM 406

Query: 193 RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVS 252
           RQD ITN +  AI TGNW+++RFKM+RQGVTQVLSRLSYIS LGMMTRI+SQFEKTRKVS
Sbjct: 407 RQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVS 466

Query: 253 GPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMF 312
           GPRSLQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT+ ++  ++K+  N+G+E + + 
Sbjct: 467 GPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLL 526

Query: 313 NGEELSSPGVYLVFVNGILAGITCHHKEV 341
            GEELS P V+LVF+NG + G+   HK++
Sbjct: 527 CGEELSYPNVFLVFLNGNILGVIRDHKKL 555



 Score =  181 bits (458), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 108/217 (49%), Positives = 126/217 (58%), Gaps = 30/217 (13%)

Query: 621 FLFFLGGGGILPSIQRQTTCLLTLILFSLNGDGKRGARNSQQYCD-CPDGYSSG---CQP 676
           FL FL G  IL  I+     + T  L    G        S    D C    S G   C+P
Sbjct: 537 FLVFLNGN-ILGVIRDHKKLVNTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRP 595

Query: 677 -------RPTFLNMHQ---FLGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVT 726
                  +P   N H      G++ F+DFL+E  +EYLDVNE ND +IA+ E  I    T
Sbjct: 596 YIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKD-T 654

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           THLEI PFTLLGVCAG              L+PYPHHNQ+PRNTYQCAMGKQAMG IGYN
Sbjct: 655 THLEIEPFTLLGVCAG--------------LIPYPHHNQSPRNTYQCAMGKQAMGTIGYN 700

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
           QQNRIDTLMY L Y Q+PMV++KTI +  F KLPAG+
Sbjct: 701 QQNRIDTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQ 737



 Score =  115 bits (288), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/111 (56%), Positives = 79/111 (71%), Gaps = 14/111 (12%)

Query: 303 NIGIEHIAMFNGEELSS---PGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPH 359
           N+ I+ I   N E+++S   P  YL ++N I  G+         P++EESFN TR  +PH
Sbjct: 52  NVEIKKIMKAN-EKVTSDADPMWYLKYLN-IYVGL---------PDVEESFNVTRPVSPH 100

Query: 360 ECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
           ECRLRD+TYSAPITVDIEYTRGSQR++R+ L IGRMPIML+SS CVL  KT
Sbjct: 101 ECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKT 151



 Score =  112 bits (281), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 70/86 (81%), Gaps = 1/86 (1%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           KKT +++AR+ L+ST + H+PV    F+ K +Y AVM+RR++LA  D + +DDRDYYGNK
Sbjct: 302 KKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQGD-NKVDDRDYYGNK 360

Query: 509 RLELAGSLLSLMFEDVFKRFNSELKE 534
           RLELAG LLSL+FED+FK+FNSE+K+
Sbjct: 361 RLELAGQLLSLLFEDLFKKFNSEMKK 386



 Score = 98.6 bits (244), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 42/66 (63%), Positives = 56/66 (84%)

Query: 110 PEIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDI 169
           P + +KW+L+ +FLK KGLVK HIDSF+YFINVEIKK+M+AN  + SD DP++YLKYL+I
Sbjct: 21  PTVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMWYLKYLNI 80

Query: 170 HVGIAD 175
           +VG+ D
Sbjct: 81  YVGLPD 86


>gi|348506052|ref|XP_003440574.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Oreochromis
            niloticus]
          Length = 1040

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 193/264 (73%), Positives = 234/264 (88%), Gaps = 4/264 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMY L Y QRPMV++KTI + +
Sbjct: 577  GLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQRPMVKTKTIELID 636

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNAT+AVMSYSGYDIEDAL++NKASLDRGFGRCLVY+N+KC L++Y NQT D+
Sbjct: 637  FEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLRRYTNQTFDK 696

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT----P 1088
            ++GP+L+A TRKP++RH  LD DGI +PGE++  +QVLVNKSMPT++ + +  +T    P
Sbjct: 697  VMGPMLDAATRKPIWRHSILDADGICSPGERVENKQVLVNKSMPTVTQTPLEGSTQPGQP 756

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
            +Y++VP+SYKGS  SY+EKV++SSN+EDAFLIK+LLRQTRRPEIGDKFSSRHGQKGV GL
Sbjct: 757  QYRDVPISYKGSTDSYIEKVMISSNAEDAFLIKILLRQTRRPEIGDKFSSRHGQKGVCGL 816

Query: 1149 IVEQEDMPFNESGICPDIIMNPHG 1172
            IV QEDMPF ++GICPDIIMNPHG
Sbjct: 817  IVPQEDMPFCDTGICPDIIMNPHG 840



 Score =  320 bits (821), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 150/192 (78%), Positives = 172/192 (89%)

Query: 1181 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1240
            +Y++VP+SYKGS  SY+EKV++SSN+EDAFLIK+LLRQTRRPEIGDKFSSRHGQKGV GL
Sbjct: 757  QYRDVPISYKGSTDSYIEKVMISSNAEDAFLIKILLRQTRRPEIGDKFSSRHGQKGVCGL 816

Query: 1241 IVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKL 1300
            IV QEDMPF ++GICPDIIMNPHGYPSRMTVGKLIELLAGKAG+++G +  GTAFGG+K+
Sbjct: 817  IVPQEDMPFCDTGICPDIIMNPHGYPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSKV 876

Query: 1301 VDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRV 1360
             DV E+LIR+GYNYQGKD   SGITGE LEAYIY GPVYYQKLKHMV DK+HAR+RGPR 
Sbjct: 877  KDVCEDLIRYGYNYQGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRA 936

Query: 1361 VLTRQPTGRRWK 1372
            VLTRQPT  R +
Sbjct: 937  VLTRQPTEGRSR 948



 Score =  260 bits (664), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 125/209 (59%), Positives = 162/209 (77%), Gaps = 4/209 (1%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVNHM 192
           +D  DY+ N  ++   Q  + ++ D+    + K+      IAD+IIPK +AAQFD+V HM
Sbjct: 258 VDDRDYYGNKRLELAGQLLSLLFEDL----FKKFNAELKKIADQIIPKQRAAQFDVVKHM 313

Query: 193 RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVS 252
           RQD ITN +  AI TGNW+++RFKM+RQGVTQVLSRLSYIS LGMMTRI+SQFEKTRKVS
Sbjct: 314 RQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVS 373

Query: 253 GPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMF 312
           GPRSLQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT+ ++  ++K+ +N+G+E + + 
Sbjct: 374 GPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKLAFNLGVEDVNLL 433

Query: 313 NGEELSSPGVYLVFVNGILAGITCHHKEV 341
            GEELS P V+LVF+NG + G+   H+++
Sbjct: 434 CGEELSYPSVFLVFLNGNILGVIRDHQKL 462



 Score =  181 bits (460), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 88/136 (64%), Positives = 102/136 (75%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G++ F+DFL+EG +EYLDVNE ND  IA+ E  I    TTHLEI PFTLLGVCAG     
Sbjct: 524 GYRTFEDFLHEGLVEYLDVNEENDCQIALYEYMINKD-TTHLEIEPFTLLGVCAG----- 577

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMY L Y QRPMV+
Sbjct: 578 ---------LIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQRPMVK 628

Query: 808 SKTIRITNFHKLPAGK 823
           +KTI + +F KLPAG+
Sbjct: 629 TKTIELIDFEKLPAGQ 644



 Score =  114 bits (285), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 55/100 (55%), Positives = 76/100 (76%), Gaps = 1/100 (1%)

Query: 435 LSCKKLRQKRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALS 494
           L  K  RQ+ +   KKT +++AR+ L+S  + H+PV    F+ K +YLAVM+RR++LA  
Sbjct: 195 LGNKVRRQRMWGGPKKTKMEEARELLASLILTHVPVKEFNFRAKCIYLAVMVRRVILAQG 254

Query: 495 DPDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELKE 534
           D + +DDRDYYGNKRLELAG LLSL+FED+FK+FN+ELK+
Sbjct: 255 D-NKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNAELKK 293



 Score = 87.4 bits (215), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 40/50 (80%), Positives = 45/50 (90%)

Query: 361 CRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
           CRLRD+TYSAPITVDIEYTRGSQR++R+ L IGRMPIML+SS CVL  KT
Sbjct: 10  CRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKT 59


>gi|449276422|gb|EMC84954.1| DNA-directed RNA polymerase III subunit RPC2, partial [Columba livia]
          Length = 1105

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 193/265 (72%), Positives = 233/265 (87%), Gaps = 4/265 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMY L Y Q+PMV++KTI + +
Sbjct: 642  GLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELID 701

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNAT+AVMSYSGYDIEDAL++NKASLDRGFGRCLVY+N+KC LK+Y NQT D+
Sbjct: 702  FEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDK 761

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT----P 1088
            ++GP+L+A TRKP++RH  LD DGI +PGE++  +QVLVNKSMPT++ + +  +     P
Sbjct: 762  VMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQTPLEGSNVPQQP 821

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
            +YK+VPV+YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GL
Sbjct: 822  QYKDVPVTYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGL 881

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            IV QEDMPF ++GICPDIIMNPHG 
Sbjct: 882  IVPQEDMPFCDTGICPDIIMNPHGF 906



 Score =  322 bits (824), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 175/309 (56%), Positives = 214/309 (69%), Gaps = 26/309 (8%)

Query: 1079 SVSAISMATPEYKEVPVSYKGSVPSYLEKVLVSSNSE-----------DAFLIKMLLRQT 1127
            +V+ +S +  + ++  V  K S+     + LV  N++           D  +  ML   T
Sbjct: 712  TVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLDAAT 771

Query: 1128 RRP----EIGDKFSSRHGQKGVI--GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITE 1181
            R+P    EI D         G+   G  VE + +  N+S   P +   P       +  +
Sbjct: 772  RKPIWRHEILDA-------DGICSPGEKVENKQVLVNKS--MPTVTQTPLEGSNVPQQPQ 822

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
            YK+VPV+YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GLI
Sbjct: 823  YKDVPVTYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLI 882

Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
            V QEDMPF ++GICPDIIMNPHG+PSRMTVGKLIELLAGKAG+++G +  GTAFGG+K+ 
Sbjct: 883  VPQEDMPFCDTGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSKVK 942

Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
            DV E+LIRHGYNY GKD   SGITGE LEAYIY GPVYYQKLKHMV DK+HAR+RGPR V
Sbjct: 943  DVCEDLIRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAV 1002

Query: 1362 LTRQPTGRR 1370
            LTRQPT  R
Sbjct: 1003 LTRQPTEGR 1011



 Score =  258 bits (658), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 124/209 (59%), Positives = 161/209 (77%), Gaps = 4/209 (1%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVNHM 192
           +D  DY+ N  ++   Q  + ++ D+    + K+      IAD++IPK +AAQFD+V HM
Sbjct: 323 VDDRDYYGNKRLELAGQLLSLLFEDL----FKKFNSELKKIADQVIPKQRAAQFDVVKHM 378

Query: 193 RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVS 252
           RQD ITN +  AI TGNW+++RFKM+RQGVTQVLSRLSYIS LGMMTRI+SQFEKTRKVS
Sbjct: 379 RQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVS 438

Query: 253 GPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMF 312
           GPRSLQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT+ ++  ++K+  N+G+E + + 
Sbjct: 439 GPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKLASNLGVEDVNLL 498

Query: 313 NGEELSSPGVYLVFVNGILAGITCHHKEV 341
            GEELS P V+LVF+NG + G+   H+++
Sbjct: 499 CGEELSYPNVFLVFLNGNILGVIRDHQKL 527



 Score =  181 bits (460), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 90/150 (60%), Positives = 106/150 (70%), Gaps = 18/150 (12%)

Query: 677 RPTFLNMHQ---FLGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAP 733
           +P   N H      G++ F+DFL+EG +EYLDVNE ND  IA+ E  I    TTHLEI P
Sbjct: 575 KPAVTNKHMEELAQGYRNFEDFLHEGLVEYLDVNEENDCSIALYEHTINKD-TTHLEIEP 633

Query: 734 FTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDT 793
           FTLLGVCAG              L+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDT
Sbjct: 634 FTLLGVCAG--------------LIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDT 679

Query: 794 LMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
           LMY L Y Q+PMV++KTI + +F KLPAG+
Sbjct: 680 LMYLLAYPQKPMVKTKTIELIDFEKLPAGQ 709



 Score =  114 bits (285), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 52/70 (74%), Positives = 60/70 (85%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQ 400
           V  P++EESFN TR  +PHECRLRD+TYSAPITVDIEYTRGSQR++R+ L IGRMPIML+
Sbjct: 55  VGTPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLR 114

Query: 401 SSKCVLRNKT 410
           SS CVL  KT
Sbjct: 115 SSNCVLTGKT 124



 Score =  109 bits (272), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 52/94 (55%), Positives = 73/94 (77%), Gaps = 1/94 (1%)

Query: 441 RQKRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLD 500
           RQ+ +   KKT +++AR+ L+ST + H+ V    F+ K +Y AVM+RR++LA  + + +D
Sbjct: 266 RQRMWGGPKKTKMEEARELLASTILTHVLVKEFNFRAKCIYTAVMVRRVILAQGE-NKVD 324

Query: 501 DRDYYGNKRLELAGSLLSLMFEDVFKRFNSELKE 534
           DRDYYGNKRLELAG LLSL+FED+FK+FNSELK+
Sbjct: 325 DRDYYGNKRLELAGQLLSLLFEDLFKKFNSELKK 358



 Score = 80.1 bits (196), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 35/50 (70%), Positives = 43/50 (86%)

Query: 126 KGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIAD 175
           KGLVK HIDSF+YFINVEIKK+M+AN  + SD DP++YLKYL+I+VG  D
Sbjct: 10  KGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMWYLKYLNIYVGTPD 59


>gi|410907712|ref|XP_003967335.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like
            [Takifugu rubripes]
          Length = 1132

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 195/264 (73%), Positives = 232/264 (87%), Gaps = 4/264 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMY L Y QRPMV++KTI I  
Sbjct: 669  GLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQRPMVKTKTIEIIE 728

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNAT+AVMSYSGYDIEDALI+NKASLDRGFGRCLVY+NSKC L++Y NQT D+
Sbjct: 729  FEKLPAGQNATVAVMSYSGYDIEDALILNKASLDRGFGRCLVYKNSKCTLRRYTNQTFDK 788

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT----P 1088
            ++GP+L+A TRKP++RH  LD DGI +PGE++  +QVLVNKSMPT++ + +  +T    P
Sbjct: 789  VMGPMLDAATRKPIWRHNILDADGICSPGERVENKQVLVNKSMPTVTQTPLEGSTQTGQP 848

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
            +Y++VP+ YKGS  SY+EKV++SSN+EDAFLIK+LLRQTRRPEIGDKFSSRHGQKGV GL
Sbjct: 849  QYRDVPICYKGSTDSYIEKVMISSNAEDAFLIKILLRQTRRPEIGDKFSSRHGQKGVCGL 908

Query: 1149 IVEQEDMPFNESGICPDIIMNPHG 1172
            IV QEDMPF ++GICPDIIMNPHG
Sbjct: 909  IVPQEDMPFCDTGICPDIIMNPHG 932



 Score =  322 bits (824), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 175/310 (56%), Positives = 215/310 (69%), Gaps = 28/310 (9%)

Query: 1079 SVSAISMATPEYKEVPVSYKGSVPSYLEKVLVSSNSE-----------DAFLIKMLLRQT 1127
            +V+ +S +  + ++  +  K S+     + LV  NS+           D  +  ML   T
Sbjct: 739  TVAVMSYSGYDIEDALILNKASLDRGFGRCLVYKNSKCTLRRYTNQTFDKVMGPMLDAAT 798

Query: 1128 RRPEIGDKFSSRHGQKGVIGLI-----VEQEDMPFNESGICPDIIMNPHGLKGCDRI--T 1180
            R+P        RH      G+      VE + +  N+S   P +   P  L+G  +    
Sbjct: 799  RKP------IWRHNILDADGICSPGERVENKQVLVNKS--MPTVTQTP--LEGSTQTGQP 848

Query: 1181 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1240
            +Y++VP+ YKGS  SY+EKV++SSN+EDAFLIK+LLRQTRRPEIGDKFSSRHGQKGV GL
Sbjct: 849  QYRDVPICYKGSTDSYIEKVMISSNAEDAFLIKILLRQTRRPEIGDKFSSRHGQKGVCGL 908

Query: 1241 IVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKL 1300
            IV QEDMPF ++GICPDIIMNPHGYPSRMTVGKLIELLAGKAG+++G +  GTAFGG+K+
Sbjct: 909  IVPQEDMPFCDTGICPDIIMNPHGYPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSKV 968

Query: 1301 VDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRV 1360
             DV E+LIRHGYNYQGKD   SGITGE LEAYIY GPVYYQKLKHMV DK+HAR+RGPR 
Sbjct: 969  KDVCEDLIRHGYNYQGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRA 1028

Query: 1361 VLTRQPTGRR 1370
            VLTRQPT  R
Sbjct: 1029 VLTRQPTEGR 1038



 Score =  258 bits (659), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 123/209 (58%), Positives = 162/209 (77%), Gaps = 4/209 (1%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVNHM 192
           +D  DY+ N  ++   Q  + ++ D+    + K+      IAD+IIPK +AAQFD+V HM
Sbjct: 350 VDDRDYYGNKRLELAGQLLSLLFEDL----FKKFNSELKKIADQIIPKQRAAQFDVVKHM 405

Query: 193 RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVS 252
           RQD ITN +  AI TGNW+++RFKM+RQGVTQVLSRLS+IS LGMMTRI+SQFEKTRKVS
Sbjct: 406 RQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSFISALGMMTRISSQFEKTRKVS 465

Query: 253 GPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMF 312
           GPRSLQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT+ ++  ++K+ +N+G+E + + 
Sbjct: 466 GPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKLAFNLGVEDVNLL 525

Query: 313 NGEELSSPGVYLVFVNGILAGITCHHKEV 341
            GEELS P V++VF+NG + G+   H+++
Sbjct: 526 CGEELSYPSVFIVFLNGNILGVIRDHQKL 554



 Score =  181 bits (458), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 88/136 (64%), Positives = 101/136 (74%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G++ F+DFL++G +EYLDVNE ND  IA+ E  I    TTHLEI PFTLLGVCAG     
Sbjct: 616 GYRNFEDFLHDGLVEYLDVNEENDCQIALYEHMIHKD-TTHLEIEPFTLLGVCAG----- 669

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMY L Y QRPMV+
Sbjct: 670 ---------LIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQRPMVK 720

Query: 808 SKTIRITNFHKLPAGK 823
           +KTI I  F KLPAG+
Sbjct: 721 TKTIEIIEFEKLPAGQ 736



 Score =  115 bits (287), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/111 (56%), Positives = 79/111 (71%), Gaps = 14/111 (12%)

Query: 303 NIGIEHIAMFNGEELSS---PGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPH 359
           N+ I+ I   N E+++S   P  YL ++N I  G+         P++EESFN TR  +PH
Sbjct: 52  NVEIKKIMKAN-EKITSDADPMWYLKYLN-IYVGM---------PDVEESFNVTRPVSPH 100

Query: 360 ECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
           ECRLRD+TYSAPITVDIEYTRGSQR++R+ L IGRMPIML+SS CVL  KT
Sbjct: 101 ECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKT 151



 Score =  112 bits (280), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 55/100 (55%), Positives = 75/100 (75%), Gaps = 1/100 (1%)

Query: 435 LSCKKLRQKRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALS 494
           L  K  RQ+ +   KKT +++AR+ L+S  + H+PV    F+ K +YLAVM+RR++LA  
Sbjct: 287 LGNKVRRQRMWGGPKKTKMEEARELLASLILTHVPVKEFNFRAKCIYLAVMVRRVILA-Q 345

Query: 495 DPDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELKE 534
             + +DDRDYYGNKRLELAG LLSL+FED+FK+FNSELK+
Sbjct: 346 GGNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSELKK 385



 Score = 97.1 bits (240), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 43/64 (67%), Positives = 55/64 (85%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           + +KWKL+ +FLK KGLVK HIDSF+YFINVEIKK+M+AN  I SD DP++YLKYL+I+V
Sbjct: 23  VAEKWKLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKITSDADPMWYLKYLNIYV 82

Query: 172 GIAD 175
           G+ D
Sbjct: 83  GMPD 86


>gi|149067363|gb|EDM17096.1| similar to RNA polymerase III subunit RPC2 (predicted) [Rattus
            norvegicus]
          Length = 826

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 193/265 (72%), Positives = 232/265 (87%), Gaps = 4/265 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMY L Y Q+PMV++KTI + +
Sbjct: 550  GLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELID 609

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNAT+AVMSYSGYDIEDAL++NKASLDRGFGRCLVY+N+KC LK+Y NQT D+
Sbjct: 610  FEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDK 669

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT----P 1088
            ++GP+L+A TRKP++RH  LD DGI +PGE++  +QVLVNKSMPT++   +  +     P
Sbjct: 670  VMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQP 729

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
            +YK+VP++YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GL
Sbjct: 730  QYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGL 789

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            IV QEDMPF +SGICPDIIMNPHG 
Sbjct: 790  IVPQEDMPFCDSGICPDIIMNPHGF 814



 Score =  191 bits (486), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 95/169 (56%), Positives = 121/169 (71%), Gaps = 24/169 (14%)

Query: 173 IADKIIPKIKAAQFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYI 232
           IAD++IPK +AAQFD+V HMRQD ITN +  AI TGNW+++RFKM+RQGVTQVLSRLSYI
Sbjct: 291 IADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYI 350

Query: 233 SGLGMMTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTEN 292
           S LGMMTRI+SQFEKTRK                        ACGLVKNLALMTHITT+ 
Sbjct: 351 SALGMMTRISSQFEKTRK------------------------ACGLVKNLALMTHITTDM 386

Query: 293 DEKNMLKIMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAGITCHHKEV 341
           ++  ++K+  N+G+E + +  GEELS P V+LVF+NG + G+   HK++
Sbjct: 387 EDGPIIKLAGNLGVEDVNLLCGEELSYPNVFLVFLNGNILGVIRDHKKL 435



 Score =  181 bits (459), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 107/217 (49%), Positives = 127/217 (58%), Gaps = 30/217 (13%)

Query: 621 FLFFLGGGGILPSIQRQTTCLLTLILFSLNGDGKRGARNSQQYCD-CPDGYSSG---CQP 676
           FL FL G  IL  I+     + T  L    G        S    D C    S G   C+P
Sbjct: 417 FLVFLNGN-ILGVIRDHKKLVSTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRP 475

Query: 677 -------RPTFLNMHQ---FLGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVT 726
                  +P   N H      G++ F+DFL+E  +EYLDVNE ND +IA+ E  I    T
Sbjct: 476 YIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKD-T 534

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           THLEI PFTLLGVCAG              L+PYPHHNQ+PRNTYQCAMGKQAMG IGYN
Sbjct: 535 THLEIEPFTLLGVCAG--------------LIPYPHHNQSPRNTYQCAMGKQAMGTIGYN 580

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
           Q+NRIDTLMY L Y Q+PMV++KTI + +F KLPAG+
Sbjct: 581 QRNRIDTLMYLLAYPQKPMVKTKTIELIDFEKLPAGQ 617



 Score =  169 bits (428), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 76/94 (80%), Positives = 87/94 (92%)

Query: 1181 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1240
            +YK+VP++YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GL
Sbjct: 730  QYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGL 789

Query: 1241 IVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKL 1274
            IV QEDMPF +SGICPDIIMNPHG+PSRMTV  L
Sbjct: 790  IVPQEDMPFCDSGICPDIIMNPHGFPSRMTVSHL 823



 Score =  125 bits (313), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 104/314 (33%), Positives = 155/314 (49%), Gaps = 66/314 (21%)

Query: 259 GSQWGMLCPSD----TPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMFNG 314
             ++G L P +     P  E  GLVK      HI + N          N+ I+ I   N 
Sbjct: 5   AEEFGSLTPEELAAPIPTVEVKGLVKQ-----HIDSFN-------YFINVEIKKIMKAN- 51

Query: 315 EELSS---PGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHECRLRDLTYSAP 371
           E+++S   P  YL ++N I  G+         P++EESFN TR  +PHECRLRD+TYSAP
Sbjct: 52  EKVTSDADPMWYLKYLN-IYVGL---------PDVEESFNVTRPVSPHECRLRDMTYSAP 101

Query: 372 ITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT--EYTSSS------------- 416
           ITVDIEYTRGSQR++R+ L IGRMPIML+SS CVL  KT  E+   +             
Sbjct: 102 ITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVK 161

Query: 417 ---------RRASTSSVTMHSQRTSPLLSCKKLRQKRFQTYKKTPVDDARDFLSSTCIAH 467
                     + S + + + + R   + +         ++     V   R +L    ++ 
Sbjct: 162 GVEKVILIQEQLSKNRIIVEADRKGAVGASVTSSTHEKKSRTNMAVKQGRFYLRHNTLSE 221

Query: 468 -IPVINMRFKMKAMYLAVMIRRM------VLALSDPDMLDDRDYYGNKRLELAGSLLSLM 520
            IP++ + FK   +     I +M      V+A   P + + +      +++    LLSL+
Sbjct: 222 DIPIV-IIFKAMGVESDQEIVQMIGTEEHVMAAFGPSLEECQKAQIFTQMQ----LLSLL 276

Query: 521 FEDVFKRFNSELKE 534
           FED+FK+FNSE+K+
Sbjct: 277 FEDLFKKFNSEMKK 290



 Score = 80.9 bits (198), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 35/50 (70%), Positives = 44/50 (88%)

Query: 126 KGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIAD 175
           KGLVK HIDSF+YFINVEIKK+M+AN  + SD DP++YLKYL+I+VG+ D
Sbjct: 26  KGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMWYLKYLNIYVGLPD 75


>gi|402887515|ref|XP_003907137.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 isoform 2
            [Papio anubis]
          Length = 1075

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 194/265 (73%), Positives = 231/265 (87%), Gaps = 4/265 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQQNRIDTLMY L Y Q+PMV++KTI +  
Sbjct: 612  GLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQQNRIDTLMYLLAYPQKPMVKTKTIELIE 671

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNAT+AVMSYSGYDIEDAL++NKASLDRGFGRCLVY+N+KC LK+Y NQT D+
Sbjct: 672  FEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDK 731

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT----P 1088
            ++GP+L+A TRKP++RH  LD DGI +PGE++  +QVLVNKSMPT++   +  +     P
Sbjct: 732  VMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQP 791

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
            +YK+VP++YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GL
Sbjct: 792  QYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGL 851

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            IV QEDMPF +SGICPDIIMNPHG 
Sbjct: 852  IVPQEDMPFCDSGICPDIIMNPHGF 876



 Score =  320 bits (820), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 174/309 (56%), Positives = 214/309 (69%), Gaps = 26/309 (8%)

Query: 1079 SVSAISMATPEYKEVPVSYKGSVPSYLEKVLVSSNSE-----------DAFLIKMLLRQT 1127
            +V+ +S +  + ++  V  K S+     + LV  N++           D  +  ML   T
Sbjct: 682  TVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLDAAT 741

Query: 1128 RRP----EIGDKFSSRHGQKGVI--GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITE 1181
            R+P    EI D         G+   G  VE + +  N+S   P +   P       +  +
Sbjct: 742  RKPIWRHEILDA-------DGICSPGEKVENKQVLVNKS--MPTVTQIPLEGSNVPQQPQ 792

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
            YK+VP++YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GLI
Sbjct: 793  YKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLI 852

Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
            V QEDMPF +SGICPDIIMNPHG+PSRMTVGKLIELLAGKAG+++G +  GTAFGG+K+ 
Sbjct: 853  VPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSKVK 912

Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
            DV E+L+RHGYNY GKD   SGITGE LEAYIY GPVYYQKLKHMV DK+HAR+RGPR V
Sbjct: 913  DVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAV 972

Query: 1362 LTRQPTGRR 1370
            LTRQPT  R
Sbjct: 973  LTRQPTEGR 981



 Score =  259 bits (663), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 125/209 (59%), Positives = 161/209 (77%), Gaps = 4/209 (1%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVNHM 192
           +D  DY+ N  ++   Q  + ++ D+    + K+      IAD++IPK +AAQFD+V HM
Sbjct: 293 VDDRDYYGNKRLELAGQLLSLLFEDL----FKKFNSEMKKIADQVIPKQRAAQFDVVKHM 348

Query: 193 RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVS 252
           RQD ITN +  AI TGNW+++RFKM+RQGVTQVLSRLSYIS LGMMTRI+SQFEKTRKVS
Sbjct: 349 RQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVS 408

Query: 253 GPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMF 312
           GPRSLQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT+ ++  ++K+  N+G+E + + 
Sbjct: 409 GPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLL 468

Query: 313 NGEELSSPGVYLVFVNGILAGITCHHKEV 341
            GEELS P V+LVF+NG + G+   HK++
Sbjct: 469 CGEELSYPNVFLVFLNGNILGVIRDHKKL 497



 Score =  180 bits (457), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 90/150 (60%), Positives = 105/150 (70%), Gaps = 18/150 (12%)

Query: 677 RPTFLNMHQ---FLGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAP 733
           +P   N H      G++ F+DFL+E  +EYLDVNE ND +IA+ E  I    TTHLEI P
Sbjct: 545 KPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKD-TTHLEIEP 603

Query: 734 FTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDT 793
           FTLLGVCAG              L+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQQNRIDT
Sbjct: 604 FTLLGVCAG--------------LIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQQNRIDT 649

Query: 794 LMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
           LMY L Y Q+PMV++KTI +  F KLPAG+
Sbjct: 650 LMYLLAYPQKPMVKTKTIELIEFEKLPAGQ 679



 Score =  114 bits (285), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 57/93 (61%), Positives = 69/93 (74%), Gaps = 10/93 (10%)

Query: 318 SSPGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIE 377
           + P  YL ++N I  G+         P++EESFN TR  +PHECRLRD+TYSAPITVDIE
Sbjct: 11  ADPMWYLKYLN-IYVGL---------PDVEESFNVTRPVSPHECRLRDMTYSAPITVDIE 60

Query: 378 YTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
           YTRGSQR++R+ L IGRMPIML+SS CVL  KT
Sbjct: 61  YTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKT 93



 Score =  112 bits (281), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 70/86 (81%), Gaps = 1/86 (1%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           KKT +++AR+ L+ST + H+PV    F+ K +Y AVM+RR++LA  D + +DDRDYYGNK
Sbjct: 244 KKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQGD-NKVDDRDYYGNK 302

Query: 509 RLELAGSLLSLMFEDVFKRFNSELKE 534
           RLELAG LLSL+FED+FK+FNSE+K+
Sbjct: 303 RLELAGQLLSLLFEDLFKKFNSEMKK 328



 Score = 42.0 bits (97), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 16/28 (57%), Positives = 23/28 (82%)

Query: 148 MQANANIYSDVDPLFYLKYLDIHVGIAD 175
           M+AN  + SD DP++YLKYL+I+VG+ D
Sbjct: 1   MKANEKVTSDADPMWYLKYLNIYVGLPD 28


>gi|351713401|gb|EHB16320.1| DNA-directed RNA polymerase III subunit RPC2 [Heterocephalus glaber]
          Length = 1133

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 195/265 (73%), Positives = 234/265 (88%), Gaps = 4/265 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMY L Y Q+PMV++KTI + +
Sbjct: 670  GLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELID 729

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNAT+AVMSYSGYDIEDAL++NKASLDRGFGRCLVY+N+KC LK+Y NQT D+
Sbjct: 730  FEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDK 789

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTIS---VSAISMA-TP 1088
            ++GP+L+A TRKP++RH  LD DGI +PGE++  +QVLVNKSMPT++   +   S+A  P
Sbjct: 790  VMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSSVAQQP 849

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
            +YK+VP++YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GL
Sbjct: 850  QYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGL 909

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            IV QEDMPF +SGICPDIIMNPHG 
Sbjct: 910  IVPQEDMPFCDSGICPDIIMNPHGF 934



 Score =  320 bits (820), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 174/309 (56%), Positives = 214/309 (69%), Gaps = 26/309 (8%)

Query: 1079 SVSAISMATPEYKEVPVSYKGSVPSYLEKVLVSSNSE-----------DAFLIKMLLRQT 1127
            +V+ +S +  + ++  V  K S+     + LV  N++           D  +  ML   T
Sbjct: 740  TVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLDAAT 799

Query: 1128 RRP----EIGDKFSSRHGQKGVI--GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITE 1181
            R+P    EI D         G+   G  VE + +  N+S   P +   P       +  +
Sbjct: 800  RKPIWRHEILDA-------DGICSPGEKVENKQVLVNKS--MPTVTQIPLEGSSVAQQPQ 850

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
            YK+VP++YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GLI
Sbjct: 851  YKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLI 910

Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
            V QEDMPF +SGICPDIIMNPHG+PSRMTVGKLIELLAGKAG+++G +  GTAFGG+K+ 
Sbjct: 911  VPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSKVK 970

Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
            DV E+L+RHGYNY GKD   SGITGE LEAYIY GPVYYQKLKHMV DK+HAR+RGPR V
Sbjct: 971  DVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAV 1030

Query: 1362 LTRQPTGRR 1370
            LTRQPT  R
Sbjct: 1031 LTRQPTEGR 1039



 Score =  257 bits (657), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 124/209 (59%), Positives = 160/209 (76%), Gaps = 4/209 (1%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVNHM 192
           +D  DY+ N  ++   Q  + ++ D+    + K+      IAD++IPK +AAQFD+V HM
Sbjct: 351 VDDRDYYGNKRLELAGQLLSLLFEDL----FKKFNSEMKKIADQVIPKQRAAQFDVVKHM 406

Query: 193 RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVS 252
           RQD ITN +  AI TGNW+++RFKM+RQGVTQVLSRLSY+S LGMMTRI+SQFEKTRKVS
Sbjct: 407 RQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYVSALGMMTRISSQFEKTRKVS 466

Query: 253 GPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMF 312
           GPRSLQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT+ ++  ++K+  N+G+E +   
Sbjct: 467 GPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLAGNLGVEDVNFL 526

Query: 313 NGEELSSPGVYLVFVNGILAGITCHHKEV 341
            GEELS P V+LVF+NG + G+   HK++
Sbjct: 527 CGEELSYPNVFLVFLNGNILGVIRDHKKL 555



 Score =  179 bits (455), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 89/150 (59%), Positives = 106/150 (70%), Gaps = 18/150 (12%)

Query: 677 RPTFLNMHQ---FLGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAP 733
           +P   N H      G++ F+DFL+E  +EYLDVNE ND +IA+ E  I    TTHLEI P
Sbjct: 603 KPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKD-TTHLEIEP 661

Query: 734 FTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDT 793
           FTLLGVCAG              L+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDT
Sbjct: 662 FTLLGVCAG--------------LIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDT 707

Query: 794 LMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
           LMY L Y Q+PMV++KTI + +F KLPAG+
Sbjct: 708 LMYLLAYPQKPMVKTKTIELIDFEKLPAGQ 737



 Score =  115 bits (287), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/111 (56%), Positives = 79/111 (71%), Gaps = 14/111 (12%)

Query: 303 NIGIEHIAMFNGEELSS---PGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPH 359
           N+ I+ I   N E+++S   P  YL ++N I  G+         P++EESFN TR  +PH
Sbjct: 52  NVEIKKIMKAN-EKVTSDADPMWYLKYLN-IYVGL---------PDVEESFNVTRPVSPH 100

Query: 360 ECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
           ECRLRD+TYSAPITVDIEYTRGSQR++R+ L IGRMPIML+SS CVL  KT
Sbjct: 101 ECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKT 151



 Score =  110 bits (276), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 50/86 (58%), Positives = 69/86 (80%), Gaps = 1/86 (1%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           KKT +++AR+ L+ T + H+PV    F+ K +Y AVM+RR++LA  D + +DDRDYYGNK
Sbjct: 302 KKTKIEEARELLACTILTHVPVKEFNFRAKCIYTAVMVRRVILAQGD-NKVDDRDYYGNK 360

Query: 509 RLELAGSLLSLMFEDVFKRFNSELKE 534
           RLELAG LLSL+FED+FK+FNSE+K+
Sbjct: 361 RLELAGQLLSLLFEDLFKKFNSEMKK 386



 Score = 95.9 bits (237), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 41/64 (64%), Positives = 55/64 (85%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           + +KW+L+ +FLK KGLVK HIDSF+YFINVEIKK+M+AN  + SD DP++YLKYL+I+V
Sbjct: 23  VEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMWYLKYLNIYV 82

Query: 172 GIAD 175
           G+ D
Sbjct: 83  GLPD 86


>gi|432863563|ref|XP_004070128.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Oryzias
            latipes]
          Length = 1093

 Score =  428 bits (1101), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 193/264 (73%), Positives = 232/264 (87%), Gaps = 4/264 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMY L Y QRPMV++KTI + +
Sbjct: 630  GLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQRPMVKTKTIELID 689

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNAT+AVMSYSGYDIEDAL++NKASLDRGFGRCLVY+N+KC L++Y NQT D+
Sbjct: 690  FEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNTKCTLRRYTNQTFDK 749

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT----P 1088
            ++GP+L+A TRKP++RH  LD DGI  PGE++  +Q+LVNKSMPT++ + +  +     P
Sbjct: 750  VMGPMLDAATRKPLWRHNILDADGICCPGEKVENKQILVNKSMPTVTQTPLEGSAQPGQP 809

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
            +YKEVP+SYKGS  SY+EKV++SSN+EDAFLIK+LLRQTRRPEIGDKFSSRHGQKGV GL
Sbjct: 810  QYKEVPISYKGSTDSYIEKVMISSNAEDAFLIKILLRQTRRPEIGDKFSSRHGQKGVCGL 869

Query: 1149 IVEQEDMPFNESGICPDIIMNPHG 1172
            IV QEDMPF +SG+CPDIIMNPHG
Sbjct: 870  IVPQEDMPFCDSGVCPDIIMNPHG 893



 Score =  323 bits (828), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 152/190 (80%), Positives = 171/190 (90%)

Query: 1181 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1240
            +YKEVP+SYKGS  SY+EKV++SSN+EDAFLIK+LLRQTRRPEIGDKFSSRHGQKGV GL
Sbjct: 810  QYKEVPISYKGSTDSYIEKVMISSNAEDAFLIKILLRQTRRPEIGDKFSSRHGQKGVCGL 869

Query: 1241 IVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKL 1300
            IV QEDMPF +SG+CPDIIMNPHGYPSRMTVGKLIELLAGKAG+++G +  GTAFGG+K+
Sbjct: 870  IVPQEDMPFCDSGVCPDIIMNPHGYPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSKV 929

Query: 1301 VDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRV 1360
             DV E+LIR+GYNYQGKD   SGITGE LEAYIY GPVYYQKLKHMV DK+HAR+RGPR 
Sbjct: 930  KDVCEDLIRYGYNYQGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRA 989

Query: 1361 VLTRQPTGRR 1370
            VLTRQPT  R
Sbjct: 990  VLTRQPTEGR 999



 Score =  260 bits (664), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 130/210 (61%), Positives = 161/210 (76%), Gaps = 5/210 (2%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVNHM 192
           +D  DY+ N  ++   Q  + ++ D+    + K+      IAD+IIPK +AAQFD+V HM
Sbjct: 311 VDDRDYYGNKRLELAGQLLSLLFEDL----FKKFNSELKKIADQIIPKQRAAQFDVVKHM 366

Query: 193 RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVS 252
           RQD ITN +  AI TGNW+++RFKM+RQGVTQVLSRLSYIS LGMMTRI+SQFEKTRKVS
Sbjct: 367 RQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVS 426

Query: 253 GPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMF 312
           GPRSLQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT+ ++  ++K+  N+G+E + + 
Sbjct: 427 GPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKLALNLGVEDVNLL 486

Query: 313 NGEELSSPGVYLVFVNG-ILAGITCHHKEV 341
            GEELS P V+LVF+NG IL  I  HHK V
Sbjct: 487 CGEELSYPSVFLVFLNGNILGVIRNHHKLV 516



 Score =  181 bits (460), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 88/136 (64%), Positives = 102/136 (75%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G++ F+DFL+EG +EYLDVNE ND  IA+ E  I    TTHLEI PFTLLGVCAG     
Sbjct: 577 GYRNFEDFLHEGLVEYLDVNEENDCQIALYEHMINKE-TTHLEIEPFTLLGVCAG----- 630

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMY L Y QRPMV+
Sbjct: 631 ---------LIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQRPMVK 681

Query: 808 SKTIRITNFHKLPAGK 823
           +KTI + +F KLPAG+
Sbjct: 682 TKTIELIDFEKLPAGQ 697



 Score =  115 bits (287), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/111 (56%), Positives = 79/111 (71%), Gaps = 14/111 (12%)

Query: 303 NIGIEHIAMFNGEELSS---PGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPH 359
           N+ I+ I   N E+++S   P  YL ++N I  G+         P++EESFN TR  +PH
Sbjct: 52  NVEIKKIMKAN-EKITSDADPMWYLKYLN-IYVGM---------PDVEESFNVTRPVSPH 100

Query: 360 ECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
           ECRLRD+TYSAPITVDIEYTRGSQR++R+ L IGRMPIML+SS CVL  KT
Sbjct: 101 ECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKT 151



 Score = 99.0 bits (245), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 44/64 (68%), Positives = 55/64 (85%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           + DKWKL+ +FLK KGLVK HIDSF+YFINVEIKK+M+AN  I SD DP++YLKYL+I+V
Sbjct: 23  VADKWKLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKITSDADPMWYLKYLNIYV 82

Query: 172 GIAD 175
           G+ D
Sbjct: 83  GMPD 86



 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/65 (64%), Positives = 54/65 (83%), Gaps = 1/65 (1%)

Query: 470 VINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFN 529
           V    F+ K +YLAVM+RR++LA  + + +DDRDYYGNKRLELAG LLSL+FED+FK+FN
Sbjct: 283 VKEFNFRAKCIYLAVMVRRVILAQGE-NKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFN 341

Query: 530 SELKE 534
           SELK+
Sbjct: 342 SELKK 346


>gi|47219788|emb|CAG03415.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1171

 Score =  428 bits (1100), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 194/264 (73%), Positives = 232/264 (87%), Gaps = 4/264 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMY L Y QRPMV++KTI I  
Sbjct: 698  GLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQRPMVKTKTIEIIE 757

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNAT+AVMSYSGYDIEDALI+NKASLDRGFGRCLVY+N+KC L++Y NQT D+
Sbjct: 758  FEKLPAGQNATVAVMSYSGYDIEDALILNKASLDRGFGRCLVYKNTKCTLRRYTNQTFDK 817

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT----P 1088
            ++GP+L+A TRKP++RH  LD DGI +PGE++  +QVLVNKSMPT++ + +  +T    P
Sbjct: 818  VMGPMLDAATRKPIWRHNILDADGICSPGERVENKQVLVNKSMPTVTQTPLEGSTQTGQP 877

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
            +Y++VP+ YKGS  SY+EKV++SSN+EDAFLIK+LLRQTRRPEIGDKFSSRHGQKGV GL
Sbjct: 878  QYRDVPICYKGSTDSYIEKVMISSNAEDAFLIKILLRQTRRPEIGDKFSSRHGQKGVCGL 937

Query: 1149 IVEQEDMPFNESGICPDIIMNPHG 1172
            IV QEDMPF ++GICPDIIMNPHG
Sbjct: 938  IVPQEDMPFCDTGICPDIIMNPHG 961



 Score =  321 bits (822), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 150/190 (78%), Positives = 170/190 (89%)

Query: 1181 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1240
            +Y++VP+ YKGS  SY+EKV++SSN+EDAFLIK+LLRQTRRPEIGDKFSSRHGQKGV GL
Sbjct: 878  QYRDVPICYKGSTDSYIEKVMISSNAEDAFLIKILLRQTRRPEIGDKFSSRHGQKGVCGL 937

Query: 1241 IVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKL 1300
            IV QEDMPF ++GICPDIIMNPHGYPSRMTVGKLIELLAGKAG+++G +  GTAFGG+K+
Sbjct: 938  IVPQEDMPFCDTGICPDIIMNPHGYPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSKV 997

Query: 1301 VDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRV 1360
             DV E+LIRHGYNYQGKD   SGITGE LEAYIY GPVYYQKLKHMV DK+HAR+RGPR 
Sbjct: 998  KDVCEDLIRHGYNYQGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRA 1057

Query: 1361 VLTRQPTGRR 1370
            VLTRQPT  R
Sbjct: 1058 VLTRQPTEGR 1067



 Score =  259 bits (661), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 124/209 (59%), Positives = 162/209 (77%), Gaps = 4/209 (1%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVNHM 192
           +D  DY+ N  ++   Q  + ++ D+    + K+      IAD+IIPK +AAQFD+V HM
Sbjct: 379 VDDRDYYGNKRLELAGQLLSLLFEDL----FKKFNSELKKIADQIIPKQRAAQFDVVKHM 434

Query: 193 RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVS 252
           RQD ITN +  AI TGNW+++RFKM+RQGVTQVLSRLS+IS LGMMTRI+SQFEKTRKVS
Sbjct: 435 RQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSFISALGMMTRISSQFEKTRKVS 494

Query: 253 GPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMF 312
           GPRSLQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT+ ++  ++K+ +N+G+E + + 
Sbjct: 495 GPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKLAFNLGVEDVNLL 554

Query: 313 NGEELSSPGVYLVFVNGILAGITCHHKEV 341
            GEELS P V+LVF+NG + G+   H+++
Sbjct: 555 CGEELSYPSVFLVFLNGNILGVIRDHQKL 583



 Score =  181 bits (459), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 88/136 (64%), Positives = 101/136 (74%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G++ F+DFL++G +EYLDVNE ND  IA+ E  I    TTHLEI PFTLLGVCAG     
Sbjct: 645 GYRNFEDFLHDGLVEYLDVNEENDCQIALYEHMIHKD-TTHLEIEPFTLLGVCAG----- 698

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMY L Y QRPMV+
Sbjct: 699 ---------LIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQRPMVK 749

Query: 808 SKTIRITNFHKLPAGK 823
           +KTI I  F KLPAG+
Sbjct: 750 TKTIEIIEFEKLPAGQ 765



 Score =  115 bits (287), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 56/100 (56%), Positives = 76/100 (76%), Gaps = 1/100 (1%)

Query: 435 LSCKKLRQKRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALS 494
           L  K  RQ+ +   KKT +++AR+ L+S  + H+PV    F+ K +YLAVM+RR++LA  
Sbjct: 316 LGNKVRRQRMWGGPKKTKMEEARELLASLILTHVPVKEFNFRAKCIYLAVMVRRVILAQG 375

Query: 495 DPDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELKE 534
           D + +DDRDYYGNKRLELAG LLSL+FED+FK+FNSELK+
Sbjct: 376 D-NKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSELKK 414



 Score =  114 bits (284), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 52/70 (74%), Positives = 60/70 (85%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQ 400
           V  P++EESFN TR  +PHECRLRD+TYSAPITVDIEYTRGSQR++R+ L IGRMPIML+
Sbjct: 111 VGMPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLR 170

Query: 401 SSKCVLRNKT 410
           SS CVL  KT
Sbjct: 171 SSNCVLTGKT 180



 Score = 83.2 bits (204), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 37/54 (68%), Positives = 46/54 (85%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLK 165
           + +KWKL+ +FLK KGLVK HIDSF+YFINVEIKK+M+AN  I SD DP++YLK
Sbjct: 23  VAEKWKLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKITSDADPMWYLK 76


>gi|395538371|ref|XP_003771156.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Sarcophilus
            harrisii]
          Length = 1174

 Score =  428 bits (1100), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 193/265 (72%), Positives = 233/265 (87%), Gaps = 4/265 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMY L Y Q+PMV++KTI + +
Sbjct: 711  GLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELID 770

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNAT+AVMSYSGYDIEDAL++NKASLDRGFGRCLVY+N+KC LK+Y NQT D+
Sbjct: 771  FEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDK 830

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT----P 1088
            ++GP+L+A TRKP++RH  LD DGI +PGE++  +QVLVNKSMPT++   +  ++    P
Sbjct: 831  VMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSSVPQQP 890

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
            +YK+VP++YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GL
Sbjct: 891  QYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGL 950

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            IV QEDMPF +SGICPDIIMNPHG 
Sbjct: 951  IVPQEDMPFCDSGICPDIIMNPHGF 975



 Score =  320 bits (819), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 174/309 (56%), Positives = 214/309 (69%), Gaps = 26/309 (8%)

Query: 1079 SVSAISMATPEYKEVPVSYKGSVPSYLEKVLVSSNSE-----------DAFLIKMLLRQT 1127
            +V+ +S +  + ++  V  K S+     + LV  N++           D  +  ML   T
Sbjct: 781  TVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLDAAT 840

Query: 1128 RRP----EIGDKFSSRHGQKGVI--GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITE 1181
            R+P    EI D         G+   G  VE + +  N+S   P +   P       +  +
Sbjct: 841  RKPIWRHEILDA-------DGICSPGEKVENKQVLVNKS--MPTVTQIPLEGSSVPQQPQ 891

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
            YK+VP++YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GLI
Sbjct: 892  YKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLI 951

Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
            V QEDMPF +SGICPDIIMNPHG+PSRMTVGKLIELLAGKAG+++G +  GTAFGG+K+ 
Sbjct: 952  VPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGKFHYGTAFGGSKVK 1011

Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
            DV E+L+RHGYNY GKD   SGITGE LEAYIY GPVYYQKLKHMV DK+HAR+RGPR V
Sbjct: 1012 DVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAV 1071

Query: 1362 LTRQPTGRR 1370
            LTRQPT  R
Sbjct: 1072 LTRQPTEGR 1080



 Score =  259 bits (662), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 125/209 (59%), Positives = 161/209 (77%), Gaps = 4/209 (1%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVNHM 192
           +D  DY+ N  ++   Q  + ++ D+    + K+      IAD++IPK +AAQFD+V HM
Sbjct: 392 VDDRDYYGNKRLELAGQLLSLLFEDL----FKKFNSEMKKIADQVIPKQRAAQFDVVKHM 447

Query: 193 RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVS 252
           RQD ITN +  AI TGNW+++RFKM+RQGVTQVLSRLSYIS LGMMTRI+SQFEKTRKVS
Sbjct: 448 RQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVS 507

Query: 253 GPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMF 312
           GPRSLQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT+ ++  ++K+  N+G+E + + 
Sbjct: 508 GPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLL 567

Query: 313 NGEELSSPGVYLVFVNGILAGITCHHKEV 341
            GEELS P V+LVF+NG + G+   HK++
Sbjct: 568 CGEELSYPNVFLVFLNGNILGVIRDHKKL 596



 Score =  179 bits (453), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 86/136 (63%), Positives = 102/136 (75%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G++ F+DFL+E  +EYLDVNE ND +IA+ E  I    TTHLEI PFTLLGVCAG     
Sbjct: 658 GYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKD-TTHLEIEPFTLLGVCAG----- 711

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMY L Y Q+PMV+
Sbjct: 712 ---------LIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVK 762

Query: 808 SKTIRITNFHKLPAGK 823
           +KTI + +F KLPAG+
Sbjct: 763 TKTIELIDFEKLPAGQ 778



 Score =  115 bits (287), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/111 (56%), Positives = 79/111 (71%), Gaps = 14/111 (12%)

Query: 303 NIGIEHIAMFNGEELSS---PGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPH 359
           N+ I+ I   N E+++S   P  YL ++N I  G+         P++EESFN TR  +PH
Sbjct: 93  NVEIKKIMKAN-EKVTSDADPMWYLKYLN-IYVGL---------PDVEESFNVTRPVSPH 141

Query: 360 ECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
           ECRLRD+TYSAPITVDIEYTRGSQR++R+ L IGRMPIML+SS CVL  KT
Sbjct: 142 ECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKT 192



 Score =  112 bits (279), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 70/86 (81%), Gaps = 1/86 (1%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           KKT +++AR+ L+ST + H+PV    F+ K +Y AVM+RR++LA  D + +DDRDYYGNK
Sbjct: 343 KKTKMEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQGD-NKVDDRDYYGNK 401

Query: 509 RLELAGSLLSLMFEDVFKRFNSELKE 534
           RLELAG LLSL+FED+FK+FNSE+K+
Sbjct: 402 RLELAGQLLSLLFEDLFKKFNSEMKK 427



 Score = 98.6 bits (244), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 42/66 (63%), Positives = 56/66 (84%)

Query: 110 PEIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDI 169
           P + +KW+L+ +FLK KGLVK HIDSF+YFINVEIKK+M+AN  + SD DP++YLKYL+I
Sbjct: 62  PTVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMWYLKYLNI 121

Query: 170 HVGIAD 175
           +VG+ D
Sbjct: 122 YVGLPD 127


>gi|148689460|gb|EDL21407.1| polymerase (RNA) III (DNA directed) polypeptide B [Mus musculus]
          Length = 1102

 Score =  428 bits (1100), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 193/265 (72%), Positives = 232/265 (87%), Gaps = 4/265 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMY L Y Q+PMV++KTI + +
Sbjct: 647  GLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELID 706

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNAT+AVMSYSGYDIEDAL++NKASLDRGFGRCLVY+N+KC LK+Y NQT D+
Sbjct: 707  FEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDK 766

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT----P 1088
            ++GP+L+A TRKP++RH  LD DGI +PGE++  +QVLVNKSMPT++   +  +     P
Sbjct: 767  VMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQP 826

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
            +YK+VP++YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GL
Sbjct: 827  QYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGL 886

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            IV QEDMPF +SGICPDIIMNPHG 
Sbjct: 887  IVPQEDMPFCDSGICPDIIMNPHGF 911



 Score =  275 bits (702), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 158/311 (50%), Positives = 196/311 (63%), Gaps = 34/311 (10%)

Query: 1079 SVSAISMATPEYKEVPVSYKGSVPSYLEKVLVSSNSE-----------DAFLIKMLLRQT 1127
            +V+ +S +  + ++  V  K S+     + LV  N++           D  +  ML   T
Sbjct: 717  TVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLDAAT 776

Query: 1128 RRP----EIGDKFSSRHGQKGVI--GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITE 1181
            R+P    EI D         G+   G  VE + +  N+S   P +   P       +  +
Sbjct: 777  RKPIWRHEILDA-------DGICSPGEKVENKQVLVNKS--MPTVTQIPLEGSNVPQQPQ 827

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
            YK+VP++YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GLI
Sbjct: 828  YKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLI 887

Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
            V QEDMPF +SGICPDIIMNPHG+PSRMTV  L           +G   EG     + + 
Sbjct: 888  VPQEDMPFCDSGICPDIIMNPHGFPSRMTVSYLWAF--------QGCCSEGKKRAVSLVT 939

Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
            DV E+L+RHGYNY GKD   SGITGE LEAYIY GPVYYQKLKHMV DK+HAR+RGPR V
Sbjct: 940  DVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAV 999

Query: 1362 LTRQPTGRRWK 1372
            LTRQPT  R +
Sbjct: 1000 LTRQPTEGRSR 1010



 Score =  195 bits (496), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 102/209 (48%), Positives = 138/209 (66%), Gaps = 28/209 (13%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVNHM 192
           +D  DY+ N  ++   Q  + ++ D+    + K+      IAD++IPK +AAQFD+V HM
Sbjct: 352 VDDRDYYGNKRLELAGQLLSLLFEDL----FKKFNSEMKKIADQVIPKQRAAQFDVVKHM 407

Query: 193 RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVS 252
           RQD ITN +  AI TGNW+++RFKM+RQGVTQVLSRLSYIS LGMMTRI+SQFEKTRK  
Sbjct: 408 RQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRK-- 465

Query: 253 GPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMF 312
                                 ACGLVKNLALMTHITT+ ++  ++K+  N+G+E + + 
Sbjct: 466 ----------------------ACGLVKNLALMTHITTDMEDGPIIKLAGNLGVEDVNLL 503

Query: 313 NGEELSSPGVYLVFVNGILAGITCHHKEV 341
            GEELS P V+LVF+NG + G+   HK++
Sbjct: 504 CGEELSYPNVFLVFLNGNILGVIRDHKKL 532



 Score =  180 bits (456), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 107/217 (49%), Positives = 127/217 (58%), Gaps = 30/217 (13%)

Query: 621 FLFFLGGGGILPSIQRQTTCLLTLILFSLNGDGKRGARNSQQYCD-CPDGYSSG---CQP 676
           FL FL G  IL  I+     + T  L    G        S    D C    S G   C+P
Sbjct: 514 FLVFLNGN-ILGVIRDHKKLVSTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRP 572

Query: 677 -------RPTFLNMHQ---FLGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVT 726
                  +P   N H      G++ F+DFL+E  +EYLDVNE ND +IA+ E  I    T
Sbjct: 573 YIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKD-T 631

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           THLEI PFTLLGVCAG              L+PYPHHNQ+PRNTYQCAMGKQAMG IGYN
Sbjct: 632 THLEIEPFTLLGVCAG--------------LIPYPHHNQSPRNTYQCAMGKQAMGTIGYN 677

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
           Q+NRIDTLMY L Y Q+PMV++KTI + +F KLPAG+
Sbjct: 678 QRNRIDTLMYLLAYPQKPMVKTKTIELIDFEKLPAGQ 714



 Score =  117 bits (293), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 75/159 (47%), Positives = 95/159 (59%), Gaps = 30/159 (18%)

Query: 259 GSQWGMLCP----SDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMFNG 314
             ++G L P    +  P  E  GLVK      HI + N          N+ I+ I   N 
Sbjct: 57  AEEFGSLTPEQLTAPIPTVEVKGLVKQ-----HIDSFN-------YFINVEIKKIMKAN- 103

Query: 315 EELSS---PGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHECRLRDLTYSAP 371
           E+++S   P  YL ++N I  G+         P++EESFN TR  +PHECRLRD+TYSAP
Sbjct: 104 EKVTSDADPMWYLKYLN-IYVGL---------PDVEESFNVTRPVSPHECRLRDMTYSAP 153

Query: 372 ITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
           ITVDIEYTRGSQR++R+ L IGRMPIML+SS CVL  KT
Sbjct: 154 ITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKT 192



 Score = 88.2 bits (217), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 41/69 (59%), Positives = 54/69 (78%), Gaps = 1/69 (1%)

Query: 466 AHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGSLLSLMFEDVF 525
             + V    F+ K +Y AVM+RR++LA  D + +DDRDYYGNKRLELAG LLSL+FED+F
Sbjct: 320 TQMQVKEFNFRAKCIYTAVMVRRVILAQGD-NKVDDRDYYGNKRLELAGQLLSLLFEDLF 378

Query: 526 KRFNSELKE 534
           K+FNSE+K+
Sbjct: 379 KKFNSEMKK 387



 Score = 80.9 bits (198), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 35/50 (70%), Positives = 44/50 (88%)

Query: 126 KGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIAD 175
           KGLVK HIDSF+YFINVEIKK+M+AN  + SD DP++YLKYL+I+VG+ D
Sbjct: 78  KGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMWYLKYLNIYVGLPD 127


>gi|46195739|ref|NP_081699.1| DNA-directed RNA polymerase III subunit RPC2 [Mus musculus]
 gi|51704303|sp|P59470.2|RPC2_MOUSE RecName: Full=DNA-directed RNA polymerase III subunit RPC2; Short=RNA
            polymerase III subunit C2; AltName: Full=C128; AltName:
            Full=DNA-directed RNA polymerase III 127.6 kDa
            polypeptide; AltName: Full=DNA-directed RNA polymerase
            III subunit B
 gi|45829714|gb|AAH68143.1| Polymerase (RNA) III (DNA directed) polypeptide B [Mus musculus]
          Length = 1133

 Score =  428 bits (1100), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 193/265 (72%), Positives = 232/265 (87%), Gaps = 4/265 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMY L Y Q+PMV++KTI + +
Sbjct: 670  GLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELID 729

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNAT+AVMSYSGYDIEDAL++NKASLDRGFGRCLVY+N+KC LK+Y NQT D+
Sbjct: 730  FEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDK 789

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT----P 1088
            ++GP+L+A TRKP++RH  LD DGI +PGE++  +QVLVNKSMPT++   +  +     P
Sbjct: 790  VMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQP 849

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
            +YK+VP++YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GL
Sbjct: 850  QYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGL 909

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            IV QEDMPF +SGICPDIIMNPHG 
Sbjct: 910  IVPQEDMPFCDSGICPDIIMNPHGF 934



 Score =  320 bits (819), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 174/309 (56%), Positives = 214/309 (69%), Gaps = 26/309 (8%)

Query: 1079 SVSAISMATPEYKEVPVSYKGSVPSYLEKVLVSSNSE-----------DAFLIKMLLRQT 1127
            +V+ +S +  + ++  V  K S+     + LV  N++           D  +  ML   T
Sbjct: 740  TVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLDAAT 799

Query: 1128 RRP----EIGDKFSSRHGQKGVI--GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITE 1181
            R+P    EI D         G+   G  VE + +  N+S   P +   P       +  +
Sbjct: 800  RKPIWRHEILDA-------DGICSPGEKVENKQVLVNKS--MPTVTQIPLEGSNVPQQPQ 850

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
            YK+VP++YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GLI
Sbjct: 851  YKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLI 910

Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
            V QEDMPF +SGICPDIIMNPHG+PSRMTVGKLIELLAGKAG+++G +  GTAFGG+K+ 
Sbjct: 911  VPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSKVK 970

Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
            DV E+L+RHGYNY GKD   SGITGE LEAYIY GPVYYQKLKHMV DK+HAR+RGPR V
Sbjct: 971  DVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAV 1030

Query: 1362 LTRQPTGRR 1370
            LTRQPT  R
Sbjct: 1031 LTRQPTEGR 1039



 Score =  259 bits (662), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 125/209 (59%), Positives = 161/209 (77%), Gaps = 4/209 (1%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVNHM 192
           +D  DY+ N  ++   Q  + ++ D+    + K+      IAD++IPK +AAQFD+V HM
Sbjct: 351 VDDRDYYGNKRLELAGQLLSLLFEDL----FKKFNSEMKKIADQVIPKQRAAQFDVVKHM 406

Query: 193 RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVS 252
           RQD ITN +  AI TGNW+++RFKM+RQGVTQVLSRLSYIS LGMMTRI+SQFEKTRKVS
Sbjct: 407 RQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVS 466

Query: 253 GPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMF 312
           GPRSLQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT+ ++  ++K+  N+G+E + + 
Sbjct: 467 GPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKLAGNLGVEDVNLL 526

Query: 313 NGEELSSPGVYLVFVNGILAGITCHHKEV 341
            GEELS P V+LVF+NG + G+   HK++
Sbjct: 527 CGEELSYPNVFLVFLNGNILGVIRDHKKL 555



 Score =  180 bits (456), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 107/217 (49%), Positives = 127/217 (58%), Gaps = 30/217 (13%)

Query: 621 FLFFLGGGGILPSIQRQTTCLLTLILFSLNGDGKRGARNSQQYCD-CPDGYSSG---CQP 676
           FL FL G  IL  I+     + T  L    G        S    D C    S G   C+P
Sbjct: 537 FLVFLNGN-ILGVIRDHKKLVSTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRP 595

Query: 677 -------RPTFLNMHQ---FLGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVT 726
                  +P   N H      G++ F+DFL+E  +EYLDVNE ND +IA+ E  I    T
Sbjct: 596 YIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKD-T 654

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           THLEI PFTLLGVCAG              L+PYPHHNQ+PRNTYQCAMGKQAMG IGYN
Sbjct: 655 THLEIEPFTLLGVCAG--------------LIPYPHHNQSPRNTYQCAMGKQAMGTIGYN 700

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
           Q+NRIDTLMY L Y Q+PMV++KTI + +F KLPAG+
Sbjct: 701 QRNRIDTLMYLLAYPQKPMVKTKTIELIDFEKLPAGQ 737



 Score =  115 bits (288), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/111 (56%), Positives = 79/111 (71%), Gaps = 14/111 (12%)

Query: 303 NIGIEHIAMFNGEELSS---PGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPH 359
           N+ I+ I   N E+++S   P  YL ++N I  G+         P++EESFN TR  +PH
Sbjct: 52  NVEIKKIMKAN-EKVTSDADPMWYLKYLN-IYVGL---------PDVEESFNVTRPVSPH 100

Query: 360 ECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
           ECRLRD+TYSAPITVDIEYTRGSQR++R+ L IGRMPIML+SS CVL  KT
Sbjct: 101 ECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKT 151



 Score =  112 bits (281), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 70/86 (81%), Gaps = 1/86 (1%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           KKT +++AR+ L+ST + H+PV    F+ K +Y AVM+RR++LA  D + +DDRDYYGNK
Sbjct: 302 KKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQGD-NKVDDRDYYGNK 360

Query: 509 RLELAGSLLSLMFEDVFKRFNSELKE 534
           RLELAG LLSL+FED+FK+FNSE+K+
Sbjct: 361 RLELAGQLLSLLFEDLFKKFNSEMKK 386



 Score = 98.6 bits (244), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 42/66 (63%), Positives = 56/66 (84%)

Query: 110 PEIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDI 169
           P + +KW+L+ +FLK KGLVK HIDSF+YFINVEIKK+M+AN  + SD DP++YLKYL+I
Sbjct: 21  PTVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMWYLKYLNI 80

Query: 170 HVGIAD 175
           +VG+ D
Sbjct: 81  YVGLPD 86


>gi|354486330|ref|XP_003505334.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Cricetulus
            griseus]
 gi|344253234|gb|EGW09338.1| DNA-directed RNA polymerase III subunit RPC2 [Cricetulus griseus]
          Length = 1133

 Score =  428 bits (1100), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 193/265 (72%), Positives = 232/265 (87%), Gaps = 4/265 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMY L Y Q+PMV++KTI + +
Sbjct: 670  GLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELID 729

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNAT+AVMSYSGYDIEDAL++NKASLDRGFGRCLVY+N+KC LK+Y NQT D+
Sbjct: 730  FEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDK 789

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT----P 1088
            ++GP+L+A TRKP++RH  LD DGI +PGE++  +QVLVNKSMPT++   +  +     P
Sbjct: 790  VMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQP 849

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
            +YK+VP++YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GL
Sbjct: 850  QYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGL 909

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            IV QEDMPF +SGICPDIIMNPHG 
Sbjct: 910  IVPQEDMPFCDSGICPDIIMNPHGF 934



 Score =  320 bits (820), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 174/309 (56%), Positives = 214/309 (69%), Gaps = 26/309 (8%)

Query: 1079 SVSAISMATPEYKEVPVSYKGSVPSYLEKVLVSSNSE-----------DAFLIKMLLRQT 1127
            +V+ +S +  + ++  V  K S+     + LV  N++           D  +  ML   T
Sbjct: 740  TVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLDAAT 799

Query: 1128 RRP----EIGDKFSSRHGQKGVI--GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITE 1181
            R+P    EI D         G+   G  VE + +  N+S   P +   P       +  +
Sbjct: 800  RKPIWRHEILDA-------DGICSPGEKVENKQVLVNKS--MPTVTQIPLEGSNVPQQPQ 850

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
            YK+VP++YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GLI
Sbjct: 851  YKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLI 910

Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
            V QEDMPF +SGICPDIIMNPHG+PSRMTVGKLIELLAGKAG+++G +  GTAFGG+K+ 
Sbjct: 911  VPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGKFHYGTAFGGSKVK 970

Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
            DV E+L+RHGYNY GKD   SGITGE LEAYIY GPVYYQKLKHMV DK+HAR+RGPR V
Sbjct: 971  DVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAV 1030

Query: 1362 LTRQPTGRR 1370
            LTRQPT  R
Sbjct: 1031 LTRQPTEGR 1039



 Score =  260 bits (665), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 126/209 (60%), Positives = 161/209 (77%), Gaps = 4/209 (1%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVNHM 192
           +D  DY+ N  ++   Q  A ++ D+    + K+      IAD++IPK +AAQFD+V HM
Sbjct: 351 VDDRDYYGNKRLELAGQLLALLFEDL----FKKFNSEMKKIADQVIPKQRAAQFDVVKHM 406

Query: 193 RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVS 252
           RQD ITN +  AI TGNW+++RFKM+RQGVTQVLSRLSYIS LGMMTRI+SQFEKTRKVS
Sbjct: 407 RQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVS 466

Query: 253 GPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMF 312
           GPRSLQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT+ ++  ++K+  N+G+E + + 
Sbjct: 467 GPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKLAGNLGVEDVNLL 526

Query: 313 NGEELSSPGVYLVFVNGILAGITCHHKEV 341
            GEELS P V+LVF+NG + G+   HK++
Sbjct: 527 CGEELSYPNVFLVFLNGNILGVIRDHKKL 555



 Score =  179 bits (455), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 89/150 (59%), Positives = 108/150 (72%), Gaps = 16/150 (10%)

Query: 675 QPRPTFLNMHQFL-GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAP 733
           +P  T  +M +   G++ F+DFL+E  +EYLDVNE ND +IA+ E  I    TTHLEI P
Sbjct: 603 KPAVTVKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKD-TTHLEIEP 661

Query: 734 FTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDT 793
           FTLLGVCAG              L+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDT
Sbjct: 662 FTLLGVCAG--------------LIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDT 707

Query: 794 LMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
           LMY L Y Q+PMV++KTI + +F KLPAG+
Sbjct: 708 LMYLLAYPQKPMVKTKTIELIDFEKLPAGQ 737



 Score =  115 bits (288), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/111 (56%), Positives = 79/111 (71%), Gaps = 14/111 (12%)

Query: 303 NIGIEHIAMFNGEELSS---PGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPH 359
           N+ I+ I   N E+++S   P  YL ++N I  G+         P++EESFN TR  +PH
Sbjct: 52  NVEIKKIMKAN-EKVTSDADPMWYLKYLN-IYVGL---------PDVEESFNVTRPVSPH 100

Query: 360 ECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
           ECRLRD+TYSAPITVDIEYTRGSQR++R+ L IGRMPIML+SS CVL  KT
Sbjct: 101 ECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKT 151



 Score =  111 bits (278), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 50/86 (58%), Positives = 70/86 (81%), Gaps = 1/86 (1%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           KKT +++AR+ L+ST + H+PV    F+ K +Y AVM+RR++LA  D + +DDRDYYGNK
Sbjct: 302 KKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQGD-NKVDDRDYYGNK 360

Query: 509 RLELAGSLLSLMFEDVFKRFNSELKE 534
           RLELAG LL+L+FED+FK+FNSE+K+
Sbjct: 361 RLELAGQLLALLFEDLFKKFNSEMKK 386



 Score = 98.6 bits (244), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 42/66 (63%), Positives = 56/66 (84%)

Query: 110 PEIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDI 169
           P + +KW+L+ +FLK KGLVK HIDSF+YFINVEIKK+M+AN  + SD DP++YLKYL+I
Sbjct: 21  PTVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMWYLKYLNI 80

Query: 170 HVGIAD 175
           +VG+ D
Sbjct: 81  YVGLPD 86


>gi|126339649|ref|XP_001365927.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Monodelphis
            domestica]
          Length = 1133

 Score =  427 bits (1099), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 193/265 (72%), Positives = 232/265 (87%), Gaps = 4/265 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMY L Y Q+PMV++KTI +  
Sbjct: 670  GLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIE 729

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNAT+AVMSYSGYDIEDAL++NKASLDRGFGRCLVY+N+KC LK+Y NQT D+
Sbjct: 730  FEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDK 789

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT----P 1088
            ++GP+L+A TRKP++RH  LD DGI +PGE++  +QVLVNKSMPT++   +  ++    P
Sbjct: 790  VMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSSVPQQP 849

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
            +YK+VP++YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GL
Sbjct: 850  QYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGL 909

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            IV QEDMPF +SGICPDIIMNPHG 
Sbjct: 910  IVPQEDMPFCDSGICPDIIMNPHGF 934



 Score =  320 bits (820), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 174/309 (56%), Positives = 214/309 (69%), Gaps = 26/309 (8%)

Query: 1079 SVSAISMATPEYKEVPVSYKGSVPSYLEKVLVSSNSE-----------DAFLIKMLLRQT 1127
            +V+ +S +  + ++  V  K S+     + LV  N++           D  +  ML   T
Sbjct: 740  TVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLDAAT 799

Query: 1128 RRP----EIGDKFSSRHGQKGVI--GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITE 1181
            R+P    EI D         G+   G  VE + +  N+S   P +   P       +  +
Sbjct: 800  RKPIWRHEILDA-------DGICSPGEKVENKQVLVNKS--MPTVTQIPLEGSSVPQQPQ 850

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
            YK+VP++YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GLI
Sbjct: 851  YKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLI 910

Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
            V QEDMPF +SGICPDIIMNPHG+PSRMTVGKLIELLAGKAG+++G +  GTAFGG+K+ 
Sbjct: 911  VPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGKFHYGTAFGGSKVK 970

Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
            DV E+L+RHGYNY GKD   SGITGE LEAYIY GPVYYQKLKHMV DK+HAR+RGPR V
Sbjct: 971  DVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAV 1030

Query: 1362 LTRQPTGRR 1370
            LTRQPT  R
Sbjct: 1031 LTRQPTEGR 1039



 Score =  259 bits (662), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 125/209 (59%), Positives = 161/209 (77%), Gaps = 4/209 (1%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVNHM 192
           +D  DY+ N  ++   Q  + ++ D+    + K+      IAD++IPK +AAQFD+V HM
Sbjct: 351 VDDRDYYGNKRLELAGQLLSLLFEDL----FKKFNSEMKKIADQVIPKQRAAQFDVVKHM 406

Query: 193 RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVS 252
           RQD ITN +  AI TGNW+++RFKM+RQGVTQVLSRLSYIS LGMMTRI+SQFEKTRKVS
Sbjct: 407 RQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVS 466

Query: 253 GPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMF 312
           GPRSLQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT+ ++  ++K+  N+G+E + + 
Sbjct: 467 GPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLL 526

Query: 313 NGEELSSPGVYLVFVNGILAGITCHHKEV 341
            GEELS P V+LVF+NG + G+   HK++
Sbjct: 527 CGEELSYPNVFLVFLNGNILGVIRDHKKL 555



 Score =  178 bits (452), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 86/136 (63%), Positives = 101/136 (74%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G++ F+DFL+E  +EYLDVNE ND +IA+ E  I    TTHLEI PFTLLGVCAG     
Sbjct: 617 GYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKD-TTHLEIEPFTLLGVCAG----- 670

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMY L Y Q+PMV+
Sbjct: 671 ---------LIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVK 721

Query: 808 SKTIRITNFHKLPAGK 823
           +KTI +  F KLPAG+
Sbjct: 722 TKTIELIEFEKLPAGQ 737



 Score =  115 bits (288), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/111 (56%), Positives = 79/111 (71%), Gaps = 14/111 (12%)

Query: 303 NIGIEHIAMFNGEELSS---PGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPH 359
           N+ I+ I   N E+++S   P  YL ++N I  G+         P++EESFN TR  +PH
Sbjct: 52  NVEIKKIMKAN-EKVTSDADPMWYLKYLN-IYVGL---------PDVEESFNVTRPVSPH 100

Query: 360 ECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
           ECRLRD+TYSAPITVDIEYTRGSQR++R+ L IGRMPIML+SS CVL  KT
Sbjct: 101 ECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKT 151



 Score =  112 bits (279), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 70/86 (81%), Gaps = 1/86 (1%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           KKT +++AR+ L+ST + H+PV    F+ K +Y AVM+RR++LA  D + +DDRDYYGNK
Sbjct: 302 KKTKMEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQGD-NKVDDRDYYGNK 360

Query: 509 RLELAGSLLSLMFEDVFKRFNSELKE 534
           RLELAG LLSL+FED+FK+FNSE+K+
Sbjct: 361 RLELAGQLLSLLFEDLFKKFNSEMKK 386



 Score = 98.6 bits (244), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 42/66 (63%), Positives = 56/66 (84%)

Query: 110 PEIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDI 169
           P + +KW+L+ +FLK KGLVK HIDSF+YFINVEIKK+M+AN  + SD DP++YLKYL+I
Sbjct: 21  PTVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMWYLKYLNI 80

Query: 170 HVGIAD 175
           +VG+ D
Sbjct: 81  YVGLPD 86


>gi|300798312|ref|NP_001178807.1| DNA-directed RNA polymerase III subunit RPC2 [Rattus norvegicus]
          Length = 1133

 Score =  427 bits (1099), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 193/265 (72%), Positives = 232/265 (87%), Gaps = 4/265 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMY L Y Q+PMV++KTI + +
Sbjct: 670  GLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELID 729

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNAT+AVMSYSGYDIEDAL++NKASLDRGFGRCLVY+N+KC LK+Y NQT D+
Sbjct: 730  FEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDK 789

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT----P 1088
            ++GP+L+A TRKP++RH  LD DGI +PGE++  +QVLVNKSMPT++   +  +     P
Sbjct: 790  VMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQP 849

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
            +YK+VP++YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GL
Sbjct: 850  QYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGL 909

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            IV QEDMPF +SGICPDIIMNPHG 
Sbjct: 910  IVPQEDMPFCDSGICPDIIMNPHGF 934



 Score =  320 bits (819), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 174/309 (56%), Positives = 214/309 (69%), Gaps = 26/309 (8%)

Query: 1079 SVSAISMATPEYKEVPVSYKGSVPSYLEKVLVSSNSE-----------DAFLIKMLLRQT 1127
            +V+ +S +  + ++  V  K S+     + LV  N++           D  +  ML   T
Sbjct: 740  TVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLDAAT 799

Query: 1128 RRP----EIGDKFSSRHGQKGVI--GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITE 1181
            R+P    EI D         G+   G  VE + +  N+S   P +   P       +  +
Sbjct: 800  RKPIWRHEILDA-------DGICSPGEKVENKQVLVNKS--MPTVTQIPLEGSNVPQQPQ 850

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
            YK+VP++YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GLI
Sbjct: 851  YKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLI 910

Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
            V QEDMPF +SGICPDIIMNPHG+PSRMTVGKLIELLAGKAG+++G +  GTAFGG+K+ 
Sbjct: 911  VPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSKVK 970

Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
            DV E+L+RHGYNY GKD   SGITGE LEAYIY GPVYYQKLKHMV DK+HAR+RGPR V
Sbjct: 971  DVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAV 1030

Query: 1362 LTRQPTGRR 1370
            LTRQPT  R
Sbjct: 1031 LTRQPTEGR 1039



 Score =  259 bits (661), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 125/209 (59%), Positives = 161/209 (77%), Gaps = 4/209 (1%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVNHM 192
           +D  DY+ N  ++   Q  + ++ D+    + K+      IAD++IPK +AAQFD+V HM
Sbjct: 351 VDDRDYYGNKRLELAGQLLSLLFEDL----FKKFNSEMKKIADQVIPKQRAAQFDVVKHM 406

Query: 193 RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVS 252
           RQD ITN +  AI TGNW+++RFKM+RQGVTQVLSRLSYIS LGMMTRI+SQFEKTRKVS
Sbjct: 407 RQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVS 466

Query: 253 GPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMF 312
           GPRSLQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT+ ++  ++K+  N+G+E + + 
Sbjct: 467 GPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKLAGNLGVEDVNLL 526

Query: 313 NGEELSSPGVYLVFVNGILAGITCHHKEV 341
            GEELS P V+LVF+NG + G+   HK++
Sbjct: 527 CGEELSYPNVFLVFLNGNILGVIRDHKKL 555



 Score =  180 bits (456), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 107/217 (49%), Positives = 127/217 (58%), Gaps = 30/217 (13%)

Query: 621 FLFFLGGGGILPSIQRQTTCLLTLILFSLNGDGKRGARNSQQYCD-CPDGYSSG---CQP 676
           FL FL G  IL  I+     + T  L    G        S    D C    S G   C+P
Sbjct: 537 FLVFLNGN-ILGVIRDHKKLVSTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRP 595

Query: 677 -------RPTFLNMHQ---FLGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVT 726
                  +P   N H      G++ F+DFL+E  +EYLDVNE ND +IA+ E  I    T
Sbjct: 596 YIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKD-T 654

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           THLEI PFTLLGVCAG              L+PYPHHNQ+PRNTYQCAMGKQAMG IGYN
Sbjct: 655 THLEIEPFTLLGVCAG--------------LIPYPHHNQSPRNTYQCAMGKQAMGTIGYN 700

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
           Q+NRIDTLMY L Y Q+PMV++KTI + +F KLPAG+
Sbjct: 701 QRNRIDTLMYLLAYPQKPMVKTKTIELIDFEKLPAGQ 737



 Score =  115 bits (287), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/111 (56%), Positives = 79/111 (71%), Gaps = 14/111 (12%)

Query: 303 NIGIEHIAMFNGEELSS---PGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPH 359
           N+ I+ I   N E+++S   P  YL ++N I  G+         P++EESFN TR  +PH
Sbjct: 52  NVEIKKIMKAN-EKVTSDADPMWYLKYLN-IYVGL---------PDVEESFNVTRPVSPH 100

Query: 360 ECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
           ECRLRD+TYSAPITVDIEYTRGSQR++R+ L IGRMPIML+SS CVL  KT
Sbjct: 101 ECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKT 151



 Score =  112 bits (281), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 70/86 (81%), Gaps = 1/86 (1%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           KKT +++AR+ L+ST + H+PV    F+ K +Y AVM+RR++LA  D + +DDRDYYGNK
Sbjct: 302 KKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQGD-NKVDDRDYYGNK 360

Query: 509 RLELAGSLLSLMFEDVFKRFNSELKE 534
           RLELAG LLSL+FED+FK+FNSE+K+
Sbjct: 361 RLELAGQLLSLLFEDLFKKFNSEMKK 386



 Score = 98.6 bits (244), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 42/66 (63%), Positives = 56/66 (84%)

Query: 110 PEIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDI 169
           P + +KW+L+ +FLK KGLVK HIDSF+YFINVEIKK+M+AN  + SD DP++YLKYL+I
Sbjct: 21  PTVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMWYLKYLNI 80

Query: 170 HVGIAD 175
           +VG+ D
Sbjct: 81  YVGLPD 86


>gi|345326788|ref|XP_001508364.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC2
            [Ornithorhynchus anatinus]
          Length = 1112

 Score =  427 bits (1099), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 193/265 (72%), Positives = 232/265 (87%), Gaps = 4/265 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMY L Y Q+PMV++KTI + +
Sbjct: 649  GLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELID 708

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNAT+AVMSYSGYDIEDAL++NKASLDRGFGRCLVY+N+KC LK+Y NQT D+
Sbjct: 709  FEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDK 768

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT----P 1088
            ++GP+L+A TRKP++RH  LD DGI +PGE++  +QVLVNKSMPT++   +  +     P
Sbjct: 769  VMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQP 828

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
            +YK+VP++YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GL
Sbjct: 829  QYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGL 888

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            IV QEDMPF +SGICPDIIMNPHG 
Sbjct: 889  IVPQEDMPFCDSGICPDIIMNPHGF 913



 Score =  320 bits (820), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 174/309 (56%), Positives = 214/309 (69%), Gaps = 26/309 (8%)

Query: 1079 SVSAISMATPEYKEVPVSYKGSVPSYLEKVLVSSNSE-----------DAFLIKMLLRQT 1127
            +V+ +S +  + ++  V  K S+     + LV  N++           D  +  ML   T
Sbjct: 719  TVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLDAAT 778

Query: 1128 RRP----EIGDKFSSRHGQKGVI--GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITE 1181
            R+P    EI D         G+   G  VE + +  N+S   P +   P       +  +
Sbjct: 779  RKPIWRHEILDA-------DGICSPGEKVENKQVLVNKS--MPTVTQIPLEGSNVPQQPQ 829

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
            YK+VP++YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GLI
Sbjct: 830  YKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLI 889

Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
            V QEDMPF +SGICPDIIMNPHG+PSRMTVGKLIELLAGKAG+++G +  GTAFGG+K+ 
Sbjct: 890  VPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGKFHYGTAFGGSKVK 949

Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
            DV E+L+RHGYNY GKD   SGITGE LEAYIY GPVYYQKLKHMV DK+HAR+RGPR V
Sbjct: 950  DVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAV 1009

Query: 1362 LTRQPTGRR 1370
            LTRQPT  R
Sbjct: 1010 LTRQPTEGR 1018



 Score =  259 bits (662), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 125/209 (59%), Positives = 161/209 (77%), Gaps = 4/209 (1%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVNHM 192
           +D  DY+ N  ++   Q  + ++ D+    + K+      IAD++IPK +AAQFD+V HM
Sbjct: 330 VDDRDYYGNKRLELAGQLLSLLFEDL----FKKFNSEMKKIADQVIPKQRAAQFDVVKHM 385

Query: 193 RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVS 252
           RQD ITN +  AI TGNW+++RFKM+RQGVTQVLSRLSYIS LGMMTRI+SQFEKTRKVS
Sbjct: 386 RQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVS 445

Query: 253 GPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMF 312
           GPRSLQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT+ ++  ++K+  N+G+E + + 
Sbjct: 446 GPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLANNLGVEDVNLL 505

Query: 313 NGEELSSPGVYLVFVNGILAGITCHHKEV 341
            GEELS P V+LVF+NG + G+   HK++
Sbjct: 506 CGEELSYPNVFLVFLNGNILGVIRDHKKL 534



 Score =  179 bits (453), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 86/136 (63%), Positives = 102/136 (75%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G++ F+DFL+E  +EYLDVNE ND +IA+ E  I    TTHLEI PFTLLGVCAG     
Sbjct: 596 GYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKD-TTHLEIEPFTLLGVCAG----- 649

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMY L Y Q+PMV+
Sbjct: 650 ---------LIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVK 700

Query: 808 SKTIRITNFHKLPAGK 823
           +KTI + +F KLPAG+
Sbjct: 701 TKTIELIDFEKLPAGQ 716



 Score =  115 bits (287), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/111 (56%), Positives = 79/111 (71%), Gaps = 14/111 (12%)

Query: 303 NIGIEHIAMFNGEELSS---PGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPH 359
           N+ I+ I   N E+++S   P  YL ++N I  G+         P++EESFN TR  +PH
Sbjct: 31  NVEIKKIMKAN-EKVTSDADPMWYLKYLN-IYVGL---------PDVEESFNVTRPVSPH 79

Query: 360 ECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
           ECRLRD+TYSAPITVDIEYTRGSQR++R+ L IGRMPIML+SS CVL  KT
Sbjct: 80  ECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKT 130



 Score =  112 bits (279), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 70/86 (81%), Gaps = 1/86 (1%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           KKT +++AR+ L+ST + H+PV    F+ K +Y AVM+RR++LA  D + +DDRDYYGNK
Sbjct: 281 KKTKMEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQGD-NKVDDRDYYGNK 339

Query: 509 RLELAGSLLSLMFEDVFKRFNSELKE 534
           RLELAG LLSL+FED+FK+FNSE+K+
Sbjct: 340 RLELAGQLLSLLFEDLFKKFNSEMKK 365



 Score = 95.9 bits (237), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 41/64 (64%), Positives = 56/64 (87%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           +++KW+L+ +FLK KGLVK HIDSF+YFINVEIKK+M+AN  + SD DP++YLKYL+I+V
Sbjct: 2   LQEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMWYLKYLNIYV 61

Query: 172 GIAD 175
           G+ D
Sbjct: 62  GLPD 65


>gi|426225175|ref|XP_004006743.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Ovis aries]
          Length = 1133

 Score =  427 bits (1098), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 193/265 (72%), Positives = 231/265 (87%), Gaps = 4/265 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMY L Y Q+PMV++KTI +  
Sbjct: 670  GLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIE 729

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNAT+AVMSYSGYDIEDAL++NKASLDRGFGRCLVY+N+KC LK+Y NQT D+
Sbjct: 730  FEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDK 789

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT----P 1088
            ++GP+L+A TRKP++RH  LD DGI +PGE++  +QVLVNKSMPT++   +  +     P
Sbjct: 790  VMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQP 849

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
            +YK+VP++YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GL
Sbjct: 850  QYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGL 909

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            IV QEDMPF +SGICPDIIMNPHG 
Sbjct: 910  IVPQEDMPFCDSGICPDIIMNPHGF 934



 Score =  320 bits (820), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 174/309 (56%), Positives = 214/309 (69%), Gaps = 26/309 (8%)

Query: 1079 SVSAISMATPEYKEVPVSYKGSVPSYLEKVLVSSNSE-----------DAFLIKMLLRQT 1127
            +V+ +S +  + ++  V  K S+     + LV  N++           D  +  ML   T
Sbjct: 740  TVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLDAAT 799

Query: 1128 RRP----EIGDKFSSRHGQKGVI--GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITE 1181
            R+P    EI D         G+   G  VE + +  N+S   P +   P       +  +
Sbjct: 800  RKPIWRHEILDA-------DGICSPGEKVENKQVLVNKS--MPTVTQIPLEGSNVPQQPQ 850

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
            YK+VP++YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GLI
Sbjct: 851  YKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLI 910

Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
            V QEDMPF +SGICPDIIMNPHG+PSRMTVGKLIELLAGKAG+++G +  GTAFGG+K+ 
Sbjct: 911  VPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSKVK 970

Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
            DV E+L+RHGYNY GKD   SGITGE LEAYIY GPVYYQKLKHMV DK+HAR+RGPR V
Sbjct: 971  DVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAV 1030

Query: 1362 LTRQPTGRR 1370
            LTRQPT  R
Sbjct: 1031 LTRQPTEGR 1039



 Score =  260 bits (665), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 125/209 (59%), Positives = 162/209 (77%), Gaps = 4/209 (1%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVNHM 192
           +D  DY+ N  ++   Q  + ++ D+    + K+      IAD++IPK +AAQFD+V HM
Sbjct: 351 VDDRDYYGNKRLELAGQLLSLLFEDL----FKKFNSEMKKIADQVIPKQRAAQFDVVKHM 406

Query: 193 RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVS 252
           RQD ITN +  AI TGNW+++RFKM+RQGVTQVLSRLSYIS LGMMTRI+SQFEKTRKVS
Sbjct: 407 RQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVS 466

Query: 253 GPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMF 312
           GPRSLQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT+ ++  ++K+  N+G+E +++ 
Sbjct: 467 GPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVSLL 526

Query: 313 NGEELSSPGVYLVFVNGILAGITCHHKEV 341
            GEELS P V+LVF+NG + G+   HK++
Sbjct: 527 CGEELSYPNVFLVFLNGNILGVIRDHKKL 555



 Score =  179 bits (454), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 107/217 (49%), Positives = 126/217 (58%), Gaps = 30/217 (13%)

Query: 621 FLFFLGGGGILPSIQRQTTCLLTLILFSLNGDGKRGARNSQQYCD-CPDGYSSG---CQP 676
           FL FL G  IL  I+     + T  L    G        S    D C    S G   C+P
Sbjct: 537 FLVFLNGN-ILGVIRDHKKLVNTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRP 595

Query: 677 -------RPTFLNMHQ---FLGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVT 726
                  +P   N H      G++ F+DFL+E  +EYLDVNE ND +IA+ E  I    T
Sbjct: 596 YIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKD-T 654

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           THLEI PFTLLGVCAG              L+PYPHHNQ+PRNTYQCAMGKQAMG IGYN
Sbjct: 655 THLEIEPFTLLGVCAG--------------LIPYPHHNQSPRNTYQCAMGKQAMGTIGYN 700

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
           Q+NRIDTLMY L Y Q+PMV++KTI +  F KLPAG+
Sbjct: 701 QRNRIDTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQ 737



 Score =  115 bits (288), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/111 (56%), Positives = 79/111 (71%), Gaps = 14/111 (12%)

Query: 303 NIGIEHIAMFNGEELSS---PGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPH 359
           N+ I+ I   N E+++S   P  YL ++N I  G+         P++EESFN TR  +PH
Sbjct: 52  NVEIKKIMKAN-EKVTSDADPMWYLKYLN-IYVGL---------PDVEESFNVTRPVSPH 100

Query: 360 ECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
           ECRLRD+TYSAPITVDIEYTRGSQR++R+ L IGRMPIML+SS CVL  KT
Sbjct: 101 ECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKT 151



 Score =  112 bits (281), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 70/86 (81%), Gaps = 1/86 (1%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           KKT +++AR+ L+ST + H+PV    F+ K +Y AVM+RR++LA  D + +DDRDYYGNK
Sbjct: 302 KKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQGD-NKVDDRDYYGNK 360

Query: 509 RLELAGSLLSLMFEDVFKRFNSELKE 534
           RLELAG LLSL+FED+FK+FNSE+K+
Sbjct: 361 RLELAGQLLSLLFEDLFKKFNSEMKK 386



 Score = 98.6 bits (244), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 42/66 (63%), Positives = 56/66 (84%)

Query: 110 PEIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDI 169
           P + +KW+L+ +FLK KGLVK HIDSF+YFINVEIKK+M+AN  + SD DP++YLKYL+I
Sbjct: 21  PTVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMWYLKYLNI 80

Query: 170 HVGIAD 175
           +VG+ D
Sbjct: 81  YVGLPD 86


>gi|403275974|ref|XP_003929693.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Saimiri
            boliviensis boliviensis]
          Length = 1133

 Score =  427 bits (1098), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 193/265 (72%), Positives = 231/265 (87%), Gaps = 4/265 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMY L Y Q+PMV++KTI +  
Sbjct: 670  GLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIE 729

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNAT+AVMSYSGYDIEDAL++NKASLDRGFGRCLVY+N+KC LK+Y NQT D+
Sbjct: 730  FEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDK 789

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT----P 1088
            ++GP+L+A TRKP++RH  LD DGI +PGE++  +QVLVNKSMPT++   +  +     P
Sbjct: 790  VMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQP 849

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
            +YK+VP++YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GL
Sbjct: 850  QYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGL 909

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            IV QEDMPF +SGICPDIIMNPHG 
Sbjct: 910  IVPQEDMPFCDSGICPDIIMNPHGF 934



 Score =  320 bits (820), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 174/309 (56%), Positives = 214/309 (69%), Gaps = 26/309 (8%)

Query: 1079 SVSAISMATPEYKEVPVSYKGSVPSYLEKVLVSSNSE-----------DAFLIKMLLRQT 1127
            +V+ +S +  + ++  V  K S+     + LV  N++           D  +  ML   T
Sbjct: 740  TVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLDAAT 799

Query: 1128 RRP----EIGDKFSSRHGQKGVI--GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITE 1181
            R+P    EI D         G+   G  VE + +  N+S   P +   P       +  +
Sbjct: 800  RKPIWRHEILDA-------DGICSPGEKVENKQVLVNKS--MPTVTQIPLEGSNVPQQPQ 850

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
            YK+VP++YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GLI
Sbjct: 851  YKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLI 910

Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
            V QEDMPF +SGICPDIIMNPHG+PSRMTVGKLIELLAGKAG+++G +  GTAFGG+K+ 
Sbjct: 911  VPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSKVK 970

Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
            DV E+L+RHGYNY GKD   SGITGE LEAYIY GPVYYQKLKHMV DK+HAR+RGPR V
Sbjct: 971  DVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAV 1030

Query: 1362 LTRQPTGRR 1370
            LTRQPT  R
Sbjct: 1031 LTRQPTEGR 1039



 Score =  259 bits (662), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 125/209 (59%), Positives = 161/209 (77%), Gaps = 4/209 (1%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVNHM 192
           +D  DY+ N  ++   Q  + ++ D+    + K+      IAD++IPK +AAQFD+V HM
Sbjct: 351 VDDRDYYGNKRLELAGQLLSLLFEDL----FKKFNSEMKKIADQVIPKQRAAQFDVVKHM 406

Query: 193 RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVS 252
           RQD ITN +  AI TGNW+++RFKM+RQGVTQVLSRLSYIS LGMMTRI+SQFEKTRKVS
Sbjct: 407 RQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVS 466

Query: 253 GPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMF 312
           GPRSLQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT+ ++  ++K+  N+G+E + + 
Sbjct: 467 GPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLL 526

Query: 313 NGEELSSPGVYLVFVNGILAGITCHHKEV 341
            GEELS P V+LVF+NG + G+   HK++
Sbjct: 527 CGEELSYPNVFLVFLNGNILGVIRDHKKL 555



 Score =  179 bits (453), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 107/217 (49%), Positives = 126/217 (58%), Gaps = 30/217 (13%)

Query: 621 FLFFLGGGGILPSIQRQTTCLLTLILFSLNGDGKRGARNSQQYCD-CPDGYSSG---CQP 676
           FL FL G  IL  I+     + T  L    G        S    D C    S G   C+P
Sbjct: 537 FLVFLNGN-ILGVIRDHKKLVNTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRP 595

Query: 677 -------RPTFLNMHQ---FLGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVT 726
                  +P   N H      G++ F+DFL+E  +EYLDVNE ND +IA+ E  I    T
Sbjct: 596 YIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKD-T 654

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           THLEI PFTLLGVCAG              L+PYPHHNQ+PRNTYQCAMGKQAMG IGYN
Sbjct: 655 THLEIEPFTLLGVCAG--------------LIPYPHHNQSPRNTYQCAMGKQAMGTIGYN 700

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
           Q+NRIDTLMY L Y Q+PMV++KTI +  F KLPAG+
Sbjct: 701 QRNRIDTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQ 737



 Score =  115 bits (288), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/111 (56%), Positives = 79/111 (71%), Gaps = 14/111 (12%)

Query: 303 NIGIEHIAMFNGEELSS---PGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPH 359
           N+ I+ I   N E+++S   P  YL ++N I  G+         P++EESFN TR  +PH
Sbjct: 52  NVEIKKIMKAN-EKVTSDADPMWYLKYLN-IYVGL---------PDVEESFNVTRPVSPH 100

Query: 360 ECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
           ECRLRD+TYSAPITVDIEYTRGSQR++R+ L IGRMPIML+SS CVL  KT
Sbjct: 101 ECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKT 151



 Score =  112 bits (281), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 70/86 (81%), Gaps = 1/86 (1%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           KKT +++AR+ L+ST + H+PV    F+ K +Y AVM+RR++LA  D + +DDRDYYGNK
Sbjct: 302 KKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQGD-NKVDDRDYYGNK 360

Query: 509 RLELAGSLLSLMFEDVFKRFNSELKE 534
           RLELAG LLSL+FED+FK+FNSE+K+
Sbjct: 361 RLELAGQLLSLLFEDLFKKFNSEMKK 386



 Score = 98.6 bits (244), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 42/66 (63%), Positives = 56/66 (84%)

Query: 110 PEIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDI 169
           P + +KW+L+ +FLK KGLVK HIDSF+YFINVEIKK+M+AN  + SD DP++YLKYL+I
Sbjct: 21  PTVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMWYLKYLNI 80

Query: 170 HVGIAD 175
           +VG+ D
Sbjct: 81  YVGLPD 86


>gi|149742988|ref|XP_001499030.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Equus
            caballus]
          Length = 1133

 Score =  427 bits (1098), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 193/265 (72%), Positives = 231/265 (87%), Gaps = 4/265 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMY L Y Q+PMV++KTI +  
Sbjct: 670  GLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIE 729

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNAT+AVMSYSGYDIEDAL++NKASLDRGFGRCLVY+N+KC LK+Y NQT D+
Sbjct: 730  FEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDK 789

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT----P 1088
            ++GP+L+A TRKP++RH  LD DGI +PGE++  +QVLVNKSMPT++   +  +     P
Sbjct: 790  VMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQP 849

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
            +YK+VP++YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GL
Sbjct: 850  QYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGL 909

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            IV QEDMPF +SGICPDIIMNPHG 
Sbjct: 910  IVPQEDMPFCDSGICPDIIMNPHGF 934



 Score =  320 bits (820), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 174/309 (56%), Positives = 214/309 (69%), Gaps = 26/309 (8%)

Query: 1079 SVSAISMATPEYKEVPVSYKGSVPSYLEKVLVSSNSE-----------DAFLIKMLLRQT 1127
            +V+ +S +  + ++  V  K S+     + LV  N++           D  +  ML   T
Sbjct: 740  TVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLDAAT 799

Query: 1128 RRP----EIGDKFSSRHGQKGVI--GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITE 1181
            R+P    EI D         G+   G  VE + +  N+S   P +   P       +  +
Sbjct: 800  RKPIWRHEILDA-------DGICSPGEKVENKQVLVNKS--MPTVTQIPLEGSNVPQQPQ 850

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
            YK+VP++YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GLI
Sbjct: 851  YKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLI 910

Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
            V QEDMPF +SGICPDIIMNPHG+PSRMTVGKLIELLAGKAG+++G +  GTAFGG+K+ 
Sbjct: 911  VPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSKVK 970

Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
            DV E+L+RHGYNY GKD   SGITGE LEAYIY GPVYYQKLKHMV DK+HAR+RGPR V
Sbjct: 971  DVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAV 1030

Query: 1362 LTRQPTGRR 1370
            LTRQPT  R
Sbjct: 1031 LTRQPTEGR 1039



 Score =  259 bits (663), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 125/209 (59%), Positives = 161/209 (77%), Gaps = 4/209 (1%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVNHM 192
           +D  DY+ N  ++   Q  + ++ D+    + K+      IAD++IPK +AAQFD+V HM
Sbjct: 351 VDDRDYYGNKRLELAGQLLSLLFEDL----FKKFNSEMKKIADQVIPKQRAAQFDVVKHM 406

Query: 193 RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVS 252
           RQD ITN +  AI TGNW+++RFKM+RQGVTQVLSRLSYIS LGMMTRI+SQFEKTRKVS
Sbjct: 407 RQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVS 466

Query: 253 GPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMF 312
           GPRSLQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT+ ++  ++K+  N+G+E + + 
Sbjct: 467 GPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLL 526

Query: 313 NGEELSSPGVYLVFVNGILAGITCHHKEV 341
            GEELS P V+LVF+NG + G+   HK++
Sbjct: 527 CGEELSYPNVFLVFLNGNILGVIRDHKKL 555



 Score =  179 bits (454), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 107/217 (49%), Positives = 126/217 (58%), Gaps = 30/217 (13%)

Query: 621 FLFFLGGGGILPSIQRQTTCLLTLILFSLNGDGKRGARNSQQYCD-CPDGYSSG---CQP 676
           FL FL G  IL  I+     + T  L    G        S    D C    S G   C+P
Sbjct: 537 FLVFLNGN-ILGVIRDHKKLVNTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRP 595

Query: 677 -------RPTFLNMHQ---FLGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVT 726
                  +P   N H      G++ F+DFL+E  +EYLDVNE ND +IA+ E  I    T
Sbjct: 596 YIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKD-T 654

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           THLEI PFTLLGVCAG              L+PYPHHNQ+PRNTYQCAMGKQAMG IGYN
Sbjct: 655 THLEIEPFTLLGVCAG--------------LIPYPHHNQSPRNTYQCAMGKQAMGTIGYN 700

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
           Q+NRIDTLMY L Y Q+PMV++KTI +  F KLPAG+
Sbjct: 701 QRNRIDTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQ 737



 Score =  115 bits (288), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/111 (56%), Positives = 79/111 (71%), Gaps = 14/111 (12%)

Query: 303 NIGIEHIAMFNGEELSS---PGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPH 359
           N+ I+ I   N E+++S   P  YL ++N I  G+         P++EESFN TR  +PH
Sbjct: 52  NVEIKKIMKAN-EKVTSDADPMWYLKYLN-IYVGL---------PDVEESFNVTRPVSPH 100

Query: 360 ECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
           ECRLRD+TYSAPITVDIEYTRGSQR++R+ L IGRMPIML+SS CVL  KT
Sbjct: 101 ECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKT 151



 Score =  112 bits (281), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 70/86 (81%), Gaps = 1/86 (1%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           KKT +++AR+ L+ST + H+PV    F+ K +Y AVM+RR++LA  D + +DDRDYYGNK
Sbjct: 302 KKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQGD-NKVDDRDYYGNK 360

Query: 509 RLELAGSLLSLMFEDVFKRFNSELKE 534
           RLELAG LLSL+FED+FK+FNSE+K+
Sbjct: 361 RLELAGQLLSLLFEDLFKKFNSEMKK 386



 Score = 98.6 bits (244), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 42/66 (63%), Positives = 56/66 (84%)

Query: 110 PEIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDI 169
           P + +KW+L+ +FLK KGLVK HIDSF+YFINVEIKK+M+AN  + SD DP++YLKYL+I
Sbjct: 21  PTVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMWYLKYLNI 80

Query: 170 HVGIAD 175
           +VG+ D
Sbjct: 81  YVGLPD 86


>gi|73969955|ref|XP_531760.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Canis lupus
            familiaris]
          Length = 1133

 Score =  427 bits (1098), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 193/265 (72%), Positives = 231/265 (87%), Gaps = 4/265 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMY L Y Q+PMV++KTI +  
Sbjct: 670  GLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIE 729

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNAT+AVMSYSGYDIEDAL++NKASLDRGFGRCLVY+N+KC LK+Y NQT D+
Sbjct: 730  FEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDK 789

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT----P 1088
            ++GP+L+A TRKP++RH  LD DGI +PGE++  +QVLVNKSMPT++   +  +     P
Sbjct: 790  VMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQP 849

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
            +YK+VP++YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GL
Sbjct: 850  QYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGL 909

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            IV QEDMPF +SGICPDIIMNPHG 
Sbjct: 910  IVPQEDMPFCDSGICPDIIMNPHGF 934



 Score =  321 bits (822), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 174/309 (56%), Positives = 214/309 (69%), Gaps = 26/309 (8%)

Query: 1079 SVSAISMATPEYKEVPVSYKGSVPSYLEKVLVSSNSE-----------DAFLIKMLLRQT 1127
            +V+ +S +  + ++  V  K S+     + LV  N++           D  +  ML   T
Sbjct: 740  TVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLDAAT 799

Query: 1128 RRP----EIGDKFSSRHGQKGVI--GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITE 1181
            R+P    EI D         G+   G  VE + +  N+S   P +   P       +  +
Sbjct: 800  RKPIWRHEILDA-------DGICSPGEKVENKQVLVNKS--MPTVTQIPLEGSNVPQQPQ 850

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
            YK+VP++YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GLI
Sbjct: 851  YKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLI 910

Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
            V QEDMPF +SGICPDIIMNPHG+PSRMTVGKLIELLAGKAG+++G +  GTAFGG+K+ 
Sbjct: 911  VPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSKVK 970

Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
            DV E+L+RHGYNY GKD   SGITGE LEAYIY GPVYYQKLKHMV DK+HAR+RGPR V
Sbjct: 971  DVCEDLVRHGYNYLGKDFVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAV 1030

Query: 1362 LTRQPTGRR 1370
            LTRQPT  R
Sbjct: 1031 LTRQPTEGR 1039



 Score =  259 bits (662), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 125/209 (59%), Positives = 161/209 (77%), Gaps = 4/209 (1%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVNHM 192
           +D  DY+ N  ++   Q  + ++ D+    + K+      IAD++IPK +AAQFD+V HM
Sbjct: 351 VDDRDYYGNKRLELAGQLLSLLFEDL----FKKFNSEMKKIADQVIPKQRAAQFDVVKHM 406

Query: 193 RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVS 252
           RQD ITN +  AI TGNW+++RFKM+RQGVTQVLSRLSYIS LGMMTRI+SQFEKTRKVS
Sbjct: 407 RQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVS 466

Query: 253 GPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMF 312
           GPRSLQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT+ ++  ++K+  N+G+E + + 
Sbjct: 467 GPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLL 526

Query: 313 NGEELSSPGVYLVFVNGILAGITCHHKEV 341
            GEELS P V+LVF+NG + G+   HK++
Sbjct: 527 CGEELSYPNVFLVFLNGNILGVIRDHKKL 555



 Score =  179 bits (453), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 107/217 (49%), Positives = 126/217 (58%), Gaps = 30/217 (13%)

Query: 621 FLFFLGGGGILPSIQRQTTCLLTLILFSLNGDGKRGARNSQQYCD-CPDGYSSG---CQP 676
           FL FL G  IL  I+     + T  L    G        S    D C    S G   C+P
Sbjct: 537 FLVFLNGN-ILGVIRDHKKLVNTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRP 595

Query: 677 -------RPTFLNMHQ---FLGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVT 726
                  +P   N H      G++ F+DFL+E  +EYLDVNE ND +IA+ E  I    T
Sbjct: 596 YIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKD-T 654

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           THLEI PFTLLGVCAG              L+PYPHHNQ+PRNTYQCAMGKQAMG IGYN
Sbjct: 655 THLEIEPFTLLGVCAG--------------LIPYPHHNQSPRNTYQCAMGKQAMGTIGYN 700

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
           Q+NRIDTLMY L Y Q+PMV++KTI +  F KLPAG+
Sbjct: 701 QRNRIDTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQ 737



 Score =  115 bits (288), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/111 (56%), Positives = 79/111 (71%), Gaps = 14/111 (12%)

Query: 303 NIGIEHIAMFNGEELSS---PGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPH 359
           N+ I+ I   N E+++S   P  YL ++N I  G+         P++EESFN TR  +PH
Sbjct: 52  NVEIKKIMKAN-EKVTSDADPMWYLKYLN-IYVGL---------PDVEESFNVTRPVSPH 100

Query: 360 ECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
           ECRLRD+TYSAPITVDIEYTRGSQR++R+ L IGRMPIML+SS CVL  KT
Sbjct: 101 ECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKT 151



 Score =  112 bits (281), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 70/86 (81%), Gaps = 1/86 (1%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           KKT +++AR+ L+ST + H+PV    F+ K +Y AVM+RR++LA  D + +DDRDYYGNK
Sbjct: 302 KKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQGD-NKVDDRDYYGNK 360

Query: 509 RLELAGSLLSLMFEDVFKRFNSELKE 534
           RLELAG LLSL+FED+FK+FNSE+K+
Sbjct: 361 RLELAGQLLSLLFEDLFKKFNSEMKK 386



 Score = 98.6 bits (244), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 42/66 (63%), Positives = 56/66 (84%)

Query: 110 PEIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDI 169
           P + +KW+L+ +FLK KGLVK HIDSF+YFINVEIKK+M+AN  + SD DP++YLKYL+I
Sbjct: 21  PTVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMWYLKYLNI 80

Query: 170 HVGIAD 175
           +VG+ D
Sbjct: 81  YVGLPD 86


>gi|300795995|ref|NP_001179718.1| DNA-directed RNA polymerase III subunit RPC2 [Bos taurus]
 gi|296487427|tpg|DAA29540.1| TPA: polymerase (RNA) III (DNA directed) polypeptide B [Bos taurus]
          Length = 1133

 Score =  427 bits (1098), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 193/265 (72%), Positives = 231/265 (87%), Gaps = 4/265 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMY L Y Q+PMV++KTI +  
Sbjct: 670  GLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIE 729

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNAT+AVMSYSGYDIEDAL++NKASLDRGFGRCLVY+N+KC LK+Y NQT D+
Sbjct: 730  FEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDK 789

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT----P 1088
            ++GP+L+A TRKP++RH  LD DGI +PGE++  +QVLVNKSMPT++   +  +     P
Sbjct: 790  VMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQP 849

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
            +YK+VP++YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GL
Sbjct: 850  QYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGL 909

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            IV QEDMPF +SGICPDIIMNPHG 
Sbjct: 910  IVPQEDMPFCDSGICPDIIMNPHGF 934



 Score =  320 bits (820), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 174/309 (56%), Positives = 214/309 (69%), Gaps = 26/309 (8%)

Query: 1079 SVSAISMATPEYKEVPVSYKGSVPSYLEKVLVSSNSE-----------DAFLIKMLLRQT 1127
            +V+ +S +  + ++  V  K S+     + LV  N++           D  +  ML   T
Sbjct: 740  TVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLDAAT 799

Query: 1128 RRP----EIGDKFSSRHGQKGVI--GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITE 1181
            R+P    EI D         G+   G  VE + +  N+S   P +   P       +  +
Sbjct: 800  RKPIWRHEILDA-------DGICSPGEKVENKQVLVNKS--MPTVTQIPLEGSNVPQQPQ 850

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
            YK+VP++YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GLI
Sbjct: 851  YKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLI 910

Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
            V QEDMPF +SGICPDIIMNPHG+PSRMTVGKLIELLAGKAG+++G +  GTAFGG+K+ 
Sbjct: 911  VPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSKVK 970

Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
            DV E+L+RHGYNY GKD   SGITGE LEAYIY GPVYYQKLKHMV DK+HAR+RGPR V
Sbjct: 971  DVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAV 1030

Query: 1362 LTRQPTGRR 1370
            LTRQPT  R
Sbjct: 1031 LTRQPTEGR 1039



 Score =  259 bits (663), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 125/209 (59%), Positives = 161/209 (77%), Gaps = 4/209 (1%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVNHM 192
           +D  DY+ N  ++   Q  + ++ D+    + K+      IAD++IPK +AAQFD+V HM
Sbjct: 351 VDDRDYYGNKRLELAGQLLSLLFEDL----FKKFNSEMKKIADQVIPKQRAAQFDVVKHM 406

Query: 193 RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVS 252
           RQD ITN +  AI TGNW+++RFKM+RQGVTQVLSRLSYIS LGMMTRI+SQFEKTRKVS
Sbjct: 407 RQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVS 466

Query: 253 GPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMF 312
           GPRSLQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT+ ++  ++K+  N+G+E + + 
Sbjct: 467 GPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLL 526

Query: 313 NGEELSSPGVYLVFVNGILAGITCHHKEV 341
            GEELS P V+LVF+NG + G+   HK++
Sbjct: 527 CGEELSYPNVFLVFLNGNILGVIRDHKKL 555



 Score =  179 bits (453), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 107/217 (49%), Positives = 126/217 (58%), Gaps = 30/217 (13%)

Query: 621 FLFFLGGGGILPSIQRQTTCLLTLILFSLNGDGKRGARNSQQYCD-CPDGYSSG---CQP 676
           FL FL G  IL  I+     + T  L    G        S    D C    S G   C+P
Sbjct: 537 FLVFLNGN-ILGVIRDHKKLVNTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRP 595

Query: 677 -------RPTFLNMHQ---FLGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVT 726
                  +P   N H      G++ F+DFL+E  +EYLDVNE ND +IA+ E  I    T
Sbjct: 596 YIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKD-T 654

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           THLEI PFTLLGVCAG              L+PYPHHNQ+PRNTYQCAMGKQAMG IGYN
Sbjct: 655 THLEIEPFTLLGVCAG--------------LIPYPHHNQSPRNTYQCAMGKQAMGTIGYN 700

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
           Q+NRIDTLMY L Y Q+PMV++KTI +  F KLPAG+
Sbjct: 701 QRNRIDTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQ 737



 Score =  115 bits (288), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/111 (56%), Positives = 79/111 (71%), Gaps = 14/111 (12%)

Query: 303 NIGIEHIAMFNGEELSS---PGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPH 359
           N+ I+ I   N E+++S   P  YL ++N I  G+         P++EESFN TR  +PH
Sbjct: 52  NVEIKKIMKAN-EKVTSDADPMWYLKYLN-IYVGL---------PDVEESFNVTRPVSPH 100

Query: 360 ECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
           ECRLRD+TYSAPITVDIEYTRGSQR++R+ L IGRMPIML+SS CVL  KT
Sbjct: 101 ECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKT 151



 Score =  112 bits (281), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 70/86 (81%), Gaps = 1/86 (1%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           KKT +++AR+ L+ST + H+PV    F+ K +Y AVM+RR++LA  D + +DDRDYYGNK
Sbjct: 302 KKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQGD-NKVDDRDYYGNK 360

Query: 509 RLELAGSLLSLMFEDVFKRFNSELKE 534
           RLELAG LLSL+FED+FK+FNSE+K+
Sbjct: 361 RLELAGQLLSLLFEDLFKKFNSEMKK 386



 Score = 98.6 bits (244), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 42/66 (63%), Positives = 56/66 (84%)

Query: 110 PEIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDI 169
           P + +KW+L+ +FLK KGLVK HIDSF+YFINVEIKK+M+AN  + SD DP++YLKYL+I
Sbjct: 21  PTVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMWYLKYLNI 80

Query: 170 HVGIAD 175
           +VG+ D
Sbjct: 81  YVGLPD 86


>gi|395819924|ref|XP_003783328.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Otolemur
            garnettii]
          Length = 1133

 Score =  427 bits (1098), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 193/265 (72%), Positives = 231/265 (87%), Gaps = 4/265 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMY L Y Q+PMV++KTI +  
Sbjct: 670  GLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIE 729

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNAT+AVMSYSGYDIEDAL++NKASLDRGFGRCLVY+N+KC LK+Y NQT D+
Sbjct: 730  FEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDK 789

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT----P 1088
            ++GP+L+A TRKP++RH  LD DGI +PGE++  +QVLVNKSMPT++   +  +     P
Sbjct: 790  VMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQP 849

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
            +YK+VP++YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GL
Sbjct: 850  QYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGL 909

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            IV QEDMPF +SGICPDIIMNPHG 
Sbjct: 910  IVPQEDMPFCDSGICPDIIMNPHGF 934



 Score =  320 bits (820), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 174/309 (56%), Positives = 214/309 (69%), Gaps = 26/309 (8%)

Query: 1079 SVSAISMATPEYKEVPVSYKGSVPSYLEKVLVSSNSE-----------DAFLIKMLLRQT 1127
            +V+ +S +  + ++  V  K S+     + LV  N++           D  +  ML   T
Sbjct: 740  TVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLDAAT 799

Query: 1128 RRP----EIGDKFSSRHGQKGVI--GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITE 1181
            R+P    EI D         G+   G  VE + +  N+S   P +   P       +  +
Sbjct: 800  RKPIWRHEILDA-------DGICSPGEKVENKQVLVNKS--MPTVTQIPLEGSNVPQQPQ 850

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
            YK+VP++YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GLI
Sbjct: 851  YKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLI 910

Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
            V QEDMPF +SGICPDIIMNPHG+PSRMTVGKLIELLAGKAG+++G +  GTAFGG+K+ 
Sbjct: 911  VPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSKVK 970

Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
            DV E+L+RHGYNY GKD   SGITGE LEAYIY GPVYYQKLKHMV DK+HAR+RGPR V
Sbjct: 971  DVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAV 1030

Query: 1362 LTRQPTGRR 1370
            LTRQPT  R
Sbjct: 1031 LTRQPTEGR 1039



 Score =  259 bits (663), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 125/209 (59%), Positives = 161/209 (77%), Gaps = 4/209 (1%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVNHM 192
           +D  DY+ N  ++   Q  + ++ D+    + K+      IAD++IPK +AAQFD+V HM
Sbjct: 351 VDDRDYYGNKRLELAGQLLSLLFEDL----FKKFNSEMKKIADQVIPKQRAAQFDVVKHM 406

Query: 193 RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVS 252
           RQD ITN +  AI TGNW+++RFKM+RQGVTQVLSRLSYIS LGMMTRI+SQFEKTRKVS
Sbjct: 407 RQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVS 466

Query: 253 GPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMF 312
           GPRSLQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT+ ++  ++K+  N+G+E + + 
Sbjct: 467 GPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLL 526

Query: 313 NGEELSSPGVYLVFVNGILAGITCHHKEV 341
            GEELS P V+LVF+NG + G+   HK++
Sbjct: 527 CGEELSYPNVFLVFLNGNILGVIRDHKKL 555



 Score =  179 bits (453), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 107/217 (49%), Positives = 126/217 (58%), Gaps = 30/217 (13%)

Query: 621 FLFFLGGGGILPSIQRQTTCLLTLILFSLNGDGKRGARNSQQYCD-CPDGYSSG---CQP 676
           FL FL G  IL  I+     + T  L    G        S    D C    S G   C+P
Sbjct: 537 FLVFLNGN-ILGVIRDHKKLVNTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRP 595

Query: 677 -------RPTFLNMHQ---FLGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVT 726
                  +P   N H      G++ F+DFL+E  +EYLDVNE ND +IA+ E  I    T
Sbjct: 596 YIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKD-T 654

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           THLEI PFTLLGVCAG              L+PYPHHNQ+PRNTYQCAMGKQAMG IGYN
Sbjct: 655 THLEIEPFTLLGVCAG--------------LIPYPHHNQSPRNTYQCAMGKQAMGTIGYN 700

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
           Q+NRIDTLMY L Y Q+PMV++KTI +  F KLPAG+
Sbjct: 701 QRNRIDTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQ 737



 Score =  115 bits (288), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/111 (56%), Positives = 79/111 (71%), Gaps = 14/111 (12%)

Query: 303 NIGIEHIAMFNGEELSS---PGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPH 359
           N+ I+ I   N E+++S   P  YL ++N I  G+         P++EESFN TR  +PH
Sbjct: 52  NVEIKKIMKAN-EKVTSDADPMWYLKYLN-IYVGL---------PDVEESFNVTRPVSPH 100

Query: 360 ECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
           ECRLRD+TYSAPITVDIEYTRGSQR++R+ L IGRMPIML+SS CVL  KT
Sbjct: 101 ECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKT 151



 Score =  112 bits (281), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 70/86 (81%), Gaps = 1/86 (1%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           KKT +++AR+ L+ST + H+PV    F+ K +Y AVM+RR++LA  D + +DDRDYYGNK
Sbjct: 302 KKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQGD-NKVDDRDYYGNK 360

Query: 509 RLELAGSLLSLMFEDVFKRFNSELKE 534
           RLELAG LLSL+FED+FK+FNSE+K+
Sbjct: 361 RLELAGQLLSLLFEDLFKKFNSEMKK 386



 Score = 98.6 bits (244), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 42/66 (63%), Positives = 56/66 (84%)

Query: 110 PEIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDI 169
           P + +KW+L+ +FLK KGLVK HIDSF+YFINVEIKK+M+AN  + SD DP++YLKYL+I
Sbjct: 21  PTVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMWYLKYLNI 80

Query: 170 HVGIAD 175
           +VG+ D
Sbjct: 81  YVGLPD 86


>gi|291389954|ref|XP_002711473.1| PREDICTED: DNA-directed RNA polymerase III B [Oryctolagus cuniculus]
          Length = 1133

 Score =  427 bits (1098), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 193/265 (72%), Positives = 231/265 (87%), Gaps = 4/265 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMY L Y Q+PMV++KTI +  
Sbjct: 670  GLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIE 729

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNAT+AVMSYSGYDIEDAL++NKASLDRGFGRCLVY+N+KC LK+Y NQT D+
Sbjct: 730  FEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDK 789

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT----P 1088
            ++GP+L+A TRKP++RH  LD DGI +PGE++  +QVLVNKSMPT++   +  +     P
Sbjct: 790  VMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQP 849

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
            +YK+VP++YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GL
Sbjct: 850  QYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGL 909

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            IV QEDMPF +SGICPDIIMNPHG 
Sbjct: 910  IVPQEDMPFCDSGICPDIIMNPHGF 934



 Score =  320 bits (820), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 174/309 (56%), Positives = 214/309 (69%), Gaps = 26/309 (8%)

Query: 1079 SVSAISMATPEYKEVPVSYKGSVPSYLEKVLVSSNSE-----------DAFLIKMLLRQT 1127
            +V+ +S +  + ++  V  K S+     + LV  N++           D  +  ML   T
Sbjct: 740  TVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLDAAT 799

Query: 1128 RRP----EIGDKFSSRHGQKGVI--GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITE 1181
            R+P    EI D         G+   G  VE + +  N+S   P +   P       +  +
Sbjct: 800  RKPIWRHEILDA-------DGICSPGEKVENKQVLVNKS--MPTVTQIPLEGSNVPQQPQ 850

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
            YK+VP++YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GLI
Sbjct: 851  YKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLI 910

Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
            V QEDMPF +SGICPDIIMNPHG+PSRMTVGKLIELLAGKAG+++G +  GTAFGG+K+ 
Sbjct: 911  VPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSKVK 970

Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
            DV E+L+RHGYNY GKD   SGITGE LEAYIY GPVYYQKLKHMV DK+HAR+RGPR V
Sbjct: 971  DVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAV 1030

Query: 1362 LTRQPTGRR 1370
            LTRQPT  R
Sbjct: 1031 LTRQPTEGR 1039



 Score =  259 bits (662), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 125/209 (59%), Positives = 161/209 (77%), Gaps = 4/209 (1%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVNHM 192
           +D  DY+ N  ++   Q  + ++ D+    + K+      IAD++IPK +AAQFD+V HM
Sbjct: 351 VDDRDYYGNKRLELAGQLLSLLFEDL----FKKFNSEMKKIADQVIPKQRAAQFDVVKHM 406

Query: 193 RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVS 252
           RQD ITN +  AI TGNW+++RFKM+RQGVTQVLSRLSYIS LGMMTRI+SQFEKTRKVS
Sbjct: 407 RQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVS 466

Query: 253 GPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMF 312
           GPRSLQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT+ ++  ++K+  N+G+E + + 
Sbjct: 467 GPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLL 526

Query: 313 NGEELSSPGVYLVFVNGILAGITCHHKEV 341
            GEELS P V+LVF+NG + G+   HK++
Sbjct: 527 CGEELSYPSVFLVFLNGNILGVIRDHKKL 555



 Score =  179 bits (454), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 107/217 (49%), Positives = 126/217 (58%), Gaps = 30/217 (13%)

Query: 621 FLFFLGGGGILPSIQRQTTCLLTLILFSLNGDGKRGARNSQQYCD-CPDGYSSG---CQP 676
           FL FL G  IL  I+     + T  L    G        S    D C    S G   C+P
Sbjct: 537 FLVFLNGN-ILGVIRDHKKLVNTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRP 595

Query: 677 -------RPTFLNMHQ---FLGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVT 726
                  +P   N H      G++ F+DFL+E  +EYLDVNE ND +IA+ E  I    T
Sbjct: 596 YIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKD-T 654

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           THLEI PFTLLGVCAG              L+PYPHHNQ+PRNTYQCAMGKQAMG IGYN
Sbjct: 655 THLEIEPFTLLGVCAG--------------LIPYPHHNQSPRNTYQCAMGKQAMGTIGYN 700

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
           Q+NRIDTLMY L Y Q+PMV++KTI +  F KLPAG+
Sbjct: 701 QRNRIDTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQ 737



 Score =  115 bits (289), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/111 (57%), Positives = 79/111 (71%), Gaps = 14/111 (12%)

Query: 303 NIGIEHIAMFNGEELSS---PGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPH 359
           N+ I+ I   N E+++S   P  YL ++N I  G+         P++EESFN TR  +PH
Sbjct: 52  NVEIKKIMKAN-EKVTSDADPMWYLKYLN-IYVGL---------PDVEESFNVTRPVSPH 100

Query: 360 ECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
           ECRLRD+TYSAPITVDIEYTRGSQRV+R+ L IGRMPIML+SS CVL  KT
Sbjct: 101 ECRLRDMTYSAPITVDIEYTRGSQRVIRNALPIGRMPIMLRSSNCVLTGKT 151



 Score =  112 bits (281), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 70/86 (81%), Gaps = 1/86 (1%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           KKT +++AR+ L+ST + H+PV    F+ K +Y AVM+RR++LA  D + +DDRDYYGNK
Sbjct: 302 KKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQGD-NKVDDRDYYGNK 360

Query: 509 RLELAGSLLSLMFEDVFKRFNSELKE 534
           RLELAG LLSL+FED+FK+FNSE+K+
Sbjct: 361 RLELAGQLLSLLFEDLFKKFNSEMKK 386



 Score = 98.6 bits (244), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 42/66 (63%), Positives = 56/66 (84%)

Query: 110 PEIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDI 169
           P + +KW+L+ +FLK KGLVK HIDSF+YFINVEIKK+M+AN  + SD DP++YLKYL+I
Sbjct: 21  PTVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMWYLKYLNI 80

Query: 170 HVGIAD 175
           +VG+ D
Sbjct: 81  YVGLPD 86


>gi|238908503|ref|NP_060552.4| DNA-directed RNA polymerase III subunit RPC2 isoform 1 [Homo sapiens]
 gi|388454304|ref|NP_001253862.1| DNA-directed RNA polymerase III subunit RPC2 [Macaca mulatta]
 gi|114646699|ref|XP_001161567.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 isoform 3
            [Pan troglodytes]
 gi|301784547|ref|XP_002927687.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like
            [Ailuropoda melanoleuca]
 gi|395744767|ref|XP_003778156.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 isoform 1
            [Pongo abelii]
 gi|397525258|ref|XP_003832591.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 isoform 1
            [Pan paniscus]
 gi|29428029|sp|Q9NW08.2|RPC2_HUMAN RecName: Full=DNA-directed RNA polymerase III subunit RPC2; Short=RNA
            polymerase III subunit C2; AltName: Full=C128; AltName:
            Full=DNA-directed RNA polymerase III 127.6 kDa
            polypeptide; AltName: Full=DNA-directed RNA polymerase
            III subunit B
 gi|28277230|gb|AAH46238.1| Polymerase (RNA) III (DNA directed) polypeptide B [Homo sapiens]
 gi|119618186|gb|EAW97780.1| polymerase (RNA) III (DNA directed) polypeptide B, isoform CRA_a
            [Homo sapiens]
 gi|158256702|dbj|BAF84324.1| unnamed protein product [Homo sapiens]
 gi|355564641|gb|EHH21141.1| hypothetical protein EGK_04143 [Macaca mulatta]
 gi|355786484|gb|EHH66667.1| hypothetical protein EGM_03706 [Macaca fascicularis]
 gi|380814556|gb|AFE79152.1| DNA-directed RNA polymerase III subunit RPC2 isoform 1 [Macaca
            mulatta]
 gi|410213674|gb|JAA04056.1| polymerase (RNA) III (DNA directed) polypeptide B [Pan troglodytes]
 gi|410252446|gb|JAA14190.1| polymerase (RNA) III (DNA directed) polypeptide B [Pan troglodytes]
 gi|410301480|gb|JAA29340.1| polymerase (RNA) III (DNA directed) polypeptide B [Pan troglodytes]
 gi|410336371|gb|JAA37132.1| polymerase (RNA) III (DNA directed) polypeptide B [Pan troglodytes]
          Length = 1133

 Score =  427 bits (1098), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 193/265 (72%), Positives = 231/265 (87%), Gaps = 4/265 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMY L Y Q+PMV++KTI +  
Sbjct: 670  GLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIE 729

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNAT+AVMSYSGYDIEDAL++NKASLDRGFGRCLVY+N+KC LK+Y NQT D+
Sbjct: 730  FEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDK 789

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT----P 1088
            ++GP+L+A TRKP++RH  LD DGI +PGE++  +QVLVNKSMPT++   +  +     P
Sbjct: 790  VMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQP 849

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
            +YK+VP++YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GL
Sbjct: 850  QYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGL 909

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            IV QEDMPF +SGICPDIIMNPHG 
Sbjct: 910  IVPQEDMPFCDSGICPDIIMNPHGF 934



 Score =  320 bits (820), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 174/309 (56%), Positives = 214/309 (69%), Gaps = 26/309 (8%)

Query: 1079 SVSAISMATPEYKEVPVSYKGSVPSYLEKVLVSSNSE-----------DAFLIKMLLRQT 1127
            +V+ +S +  + ++  V  K S+     + LV  N++           D  +  ML   T
Sbjct: 740  TVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLDAAT 799

Query: 1128 RRP----EIGDKFSSRHGQKGVI--GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITE 1181
            R+P    EI D         G+   G  VE + +  N+S   P +   P       +  +
Sbjct: 800  RKPIWRHEILDA-------DGICSPGEKVENKQVLVNKS--MPTVTQIPLEGSNVPQQPQ 850

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
            YK+VP++YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GLI
Sbjct: 851  YKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLI 910

Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
            V QEDMPF +SGICPDIIMNPHG+PSRMTVGKLIELLAGKAG+++G +  GTAFGG+K+ 
Sbjct: 911  VPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSKVK 970

Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
            DV E+L+RHGYNY GKD   SGITGE LEAYIY GPVYYQKLKHMV DK+HAR+RGPR V
Sbjct: 971  DVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAV 1030

Query: 1362 LTRQPTGRR 1370
            LTRQPT  R
Sbjct: 1031 LTRQPTEGR 1039



 Score =  259 bits (662), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 125/209 (59%), Positives = 161/209 (77%), Gaps = 4/209 (1%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVNHM 192
           +D  DY+ N  ++   Q  + ++ D+    + K+      IAD++IPK +AAQFD+V HM
Sbjct: 351 VDDRDYYGNKRLELAGQLLSLLFEDL----FKKFNSEMKKIADQVIPKQRAAQFDVVKHM 406

Query: 193 RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVS 252
           RQD ITN +  AI TGNW+++RFKM+RQGVTQVLSRLSYIS LGMMTRI+SQFEKTRKVS
Sbjct: 407 RQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVS 466

Query: 253 GPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMF 312
           GPRSLQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT+ ++  ++K+  N+G+E + + 
Sbjct: 467 GPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLL 526

Query: 313 NGEELSSPGVYLVFVNGILAGITCHHKEV 341
            GEELS P V+LVF+NG + G+   HK++
Sbjct: 527 CGEELSYPNVFLVFLNGNILGVIRDHKKL 555



 Score =  179 bits (453), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 107/217 (49%), Positives = 126/217 (58%), Gaps = 30/217 (13%)

Query: 621 FLFFLGGGGILPSIQRQTTCLLTLILFSLNGDGKRGARNSQQYCD-CPDGYSSG---CQP 676
           FL FL G  IL  I+     + T  L    G        S    D C    S G   C+P
Sbjct: 537 FLVFLNGN-ILGVIRDHKKLVNTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRP 595

Query: 677 -------RPTFLNMHQ---FLGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVT 726
                  +P   N H      G++ F+DFL+E  +EYLDVNE ND +IA+ E  I    T
Sbjct: 596 YIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKD-T 654

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           THLEI PFTLLGVCAG              L+PYPHHNQ+PRNTYQCAMGKQAMG IGYN
Sbjct: 655 THLEIEPFTLLGVCAG--------------LIPYPHHNQSPRNTYQCAMGKQAMGTIGYN 700

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
           Q+NRIDTLMY L Y Q+PMV++KTI +  F KLPAG+
Sbjct: 701 QRNRIDTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQ 737



 Score =  115 bits (288), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/111 (56%), Positives = 79/111 (71%), Gaps = 14/111 (12%)

Query: 303 NIGIEHIAMFNGEELSS---PGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPH 359
           N+ I+ I   N E+++S   P  YL ++N I  G+         P++EESFN TR  +PH
Sbjct: 52  NVEIKKIMKAN-EKVTSDADPMWYLKYLN-IYVGL---------PDVEESFNVTRPVSPH 100

Query: 360 ECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
           ECRLRD+TYSAPITVDIEYTRGSQR++R+ L IGRMPIML+SS CVL  KT
Sbjct: 101 ECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKT 151



 Score =  112 bits (281), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 70/86 (81%), Gaps = 1/86 (1%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           KKT +++AR+ L+ST + H+PV    F+ K +Y AVM+RR++LA  D + +DDRDYYGNK
Sbjct: 302 KKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQGD-NKVDDRDYYGNK 360

Query: 509 RLELAGSLLSLMFEDVFKRFNSELKE 534
           RLELAG LLSL+FED+FK+FNSE+K+
Sbjct: 361 RLELAGQLLSLLFEDLFKKFNSEMKK 386



 Score = 98.6 bits (244), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 42/66 (63%), Positives = 56/66 (84%)

Query: 110 PEIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDI 169
           P + +KW+L+ +FLK KGLVK HIDSF+YFINVEIKK+M+AN  + SD DP++YLKYL+I
Sbjct: 21  PTVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMWYLKYLNI 80

Query: 170 HVGIAD 175
           +VG+ D
Sbjct: 81  YVGLPD 86


>gi|410965427|ref|XP_003989249.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
            subunit RPC2 [Felis catus]
          Length = 1133

 Score =  427 bits (1098), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 193/265 (72%), Positives = 231/265 (87%), Gaps = 4/265 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMY L Y Q+PMV++KTI +  
Sbjct: 670  GLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIE 729

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNAT+AVMSYSGYDIEDAL++NKASLDRGFGRCLVY+N+KC LK+Y NQT D+
Sbjct: 730  FEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDK 789

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT----P 1088
            ++GP+L+A TRKP++RH  LD DGI +PGE++  +QVLVNKSMPT++   +  +     P
Sbjct: 790  VMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQP 849

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
            +YK+VP++YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GL
Sbjct: 850  QYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGL 909

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            IV QEDMPF +SGICPDIIMNPHG 
Sbjct: 910  IVPQEDMPFCDSGICPDIIMNPHGF 934



 Score =  320 bits (820), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 174/309 (56%), Positives = 214/309 (69%), Gaps = 26/309 (8%)

Query: 1079 SVSAISMATPEYKEVPVSYKGSVPSYLEKVLVSSNSE-----------DAFLIKMLLRQT 1127
            +V+ +S +  + ++  V  K S+     + LV  N++           D  +  ML   T
Sbjct: 740  TVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLDAAT 799

Query: 1128 RRP----EIGDKFSSRHGQKGVI--GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITE 1181
            R+P    EI D         G+   G  VE + +  N+S   P +   P       +  +
Sbjct: 800  RKPIWRHEILDA-------DGICSPGEKVENKQVLVNKS--MPTVTQIPLEGSNVPQQPQ 850

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
            YK+VP++YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GLI
Sbjct: 851  YKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLI 910

Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
            V QEDMPF +SGICPDIIMNPHG+PSRMTVGKLIELLAGKAG+++G +  GTAFGG+K+ 
Sbjct: 911  VPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSKVK 970

Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
            DV E+L+RHGYNY GKD   SGITGE LEAYIY GPVYYQKLKHMV DK+HAR+RGPR V
Sbjct: 971  DVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAV 1030

Query: 1362 LTRQPTGRR 1370
            LTRQPT  R
Sbjct: 1031 LTRQPTEGR 1039



 Score =  259 bits (662), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 125/209 (59%), Positives = 161/209 (77%), Gaps = 4/209 (1%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVNHM 192
           +D  DY+ N  ++   Q  + ++ D+    + K+      IAD++IPK +AAQFD+V HM
Sbjct: 351 VDDRDYYGNKRLELAGQLLSLLFEDL----FKKFNSEMKKIADQVIPKQRAAQFDVVKHM 406

Query: 193 RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVS 252
           RQD ITN +  AI TGNW+++RFKM+RQGVTQVLSRLSYIS LGMMTRI+SQFEKTRKVS
Sbjct: 407 RQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVS 466

Query: 253 GPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMF 312
           GPRSLQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT+ ++  ++K+  N+G+E + + 
Sbjct: 467 GPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLL 526

Query: 313 NGEELSSPGVYLVFVNGILAGITCHHKEV 341
            GEELS P V+LVF+NG + G+   HK++
Sbjct: 527 CGEELSYPNVFLVFLNGNILGVIRDHKKL 555



 Score =  179 bits (454), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 107/217 (49%), Positives = 126/217 (58%), Gaps = 30/217 (13%)

Query: 621 FLFFLGGGGILPSIQRQTTCLLTLILFSLNGDGKRGARNSQQYCD-CPDGYSSG---CQP 676
           FL FL G  IL  I+     + T  L    G        S    D C    S G   C+P
Sbjct: 537 FLVFLNGN-ILGVIRDHKKLVNTFRLMRRAGYVNEFVSISTNLTDRCVYISSDGGRLCRP 595

Query: 677 -------RPTFLNMHQ---FLGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVT 726
                  +P   N H      G++ F+DFL+E  +EYLDVNE ND +IA+ E  I    T
Sbjct: 596 YIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKD-T 654

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           THLEI PFTLLGVCAG              L+PYPHHNQ+PRNTYQCAMGKQAMG IGYN
Sbjct: 655 THLEIEPFTLLGVCAG--------------LIPYPHHNQSPRNTYQCAMGKQAMGTIGYN 700

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
           Q+NRIDTLMY L Y Q+PMV++KTI +  F KLPAG+
Sbjct: 701 QRNRIDTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQ 737



 Score =  115 bits (288), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/111 (56%), Positives = 79/111 (71%), Gaps = 14/111 (12%)

Query: 303 NIGIEHIAMFNGEELSS---PGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPH 359
           N+ I+ I   N E+++S   P  YL ++N I  G+         P++EESFN TR  +PH
Sbjct: 52  NVEIKKIMKAN-EKVTSDADPMWYLKYLN-IYVGL---------PDVEESFNVTRPVSPH 100

Query: 360 ECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
           ECRLRD+TYSAPITVDIEYTRGSQR++R+ L IGRMPIML+SS CVL  KT
Sbjct: 101 ECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKT 151



 Score =  112 bits (281), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 70/86 (81%), Gaps = 1/86 (1%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           KKT +++AR+ L+ST + H+PV    F+ K +Y AVM+RR++LA  D + +DDRDYYGNK
Sbjct: 302 KKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQGD-NKVDDRDYYGNK 360

Query: 509 RLELAGSLLSLMFEDVFKRFNSELKE 534
           RLELAG LLSL+FED+FK+FNSE+K+
Sbjct: 361 RLELAGQLLSLLFEDLFKKFNSEMKK 386



 Score = 96.3 bits (238), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 41/64 (64%), Positives = 55/64 (85%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           + +KW+L+ +FLK KGLVK HIDSF+YFINVEIKK+M+AN  + SD DP++YLKYL+I+V
Sbjct: 23  VEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMWYLKYLNIYV 82

Query: 172 GIAD 175
           G+ D
Sbjct: 83  GLPD 86


>gi|440907714|gb|ELR57824.1| DNA-directed RNA polymerase III subunit RPC2 [Bos grunniens mutus]
          Length = 1133

 Score =  427 bits (1098), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 193/265 (72%), Positives = 231/265 (87%), Gaps = 4/265 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMY L Y Q+PMV++KTI +  
Sbjct: 670  GLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIE 729

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNAT+AVMSYSGYDIEDAL++NKASLDRGFGRCLVY+N+KC LK+Y NQT D+
Sbjct: 730  FEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDK 789

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT----P 1088
            ++GP+L+A TRKP++RH  LD DGI +PGE++  +QVLVNKSMPT++   +  +     P
Sbjct: 790  VMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQP 849

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
            +YK+VP++YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GL
Sbjct: 850  QYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGL 909

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            IV QEDMPF +SGICPDIIMNPHG 
Sbjct: 910  IVPQEDMPFCDSGICPDIIMNPHGF 934



 Score =  308 bits (788), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 170/309 (55%), Positives = 210/309 (67%), Gaps = 26/309 (8%)

Query: 1079 SVSAISMATPEYKEVPVSYKGSVPSYLEKVLVSSNSE-----------DAFLIKMLLRQT 1127
            +V+ +S +  + ++  V  K S+     + LV  N++           D  +  ML   T
Sbjct: 740  TVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLDAAT 799

Query: 1128 RRP----EIGDKFSSRHGQKGVI--GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITE 1181
            R+P    EI D         G+   G  VE + +  N+S   P +   P       +  +
Sbjct: 800  RKPIWRHEILDA-------DGICSPGEKVENKQVLVNKS--MPTVTQIPLEGSNVPQQPQ 850

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
            YK+VP++YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GLI
Sbjct: 851  YKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLI 910

Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
            V QEDMPF +SGICPDIIMNPHG+PSRMTVGKLIELLAGKAG+++G +  GTAFGG+K+ 
Sbjct: 911  VPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSKVK 970

Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
            DV E+L+RHGYNY GK    S   GE LEAYIY GPVYYQKLKHMV DK+HAR+RGPR V
Sbjct: 971  DVCEDLVRHGYNYLGKVHLASQGLGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAV 1030

Query: 1362 LTRQPTGRR 1370
            LTRQPT  R
Sbjct: 1031 LTRQPTEGR 1039



 Score =  259 bits (662), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 125/209 (59%), Positives = 161/209 (77%), Gaps = 4/209 (1%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVNHM 192
           +D  DY+ N  ++   Q  + ++ D+    + K+      IAD++IPK +AAQFD+V HM
Sbjct: 351 VDDRDYYGNKRLELAGQLLSLLFEDL----FKKFNSEMKKIADQVIPKQRAAQFDVVKHM 406

Query: 193 RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVS 252
           RQD ITN +  AI TGNW+++RFKM+RQGVTQVLSRLSYIS LGMMTRI+SQFEKTRKVS
Sbjct: 407 RQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVS 466

Query: 253 GPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMF 312
           GPRSLQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT+ ++  ++K+  N+G+E + + 
Sbjct: 467 GPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLL 526

Query: 313 NGEELSSPGVYLVFVNGILAGITCHHKEV 341
            GEELS P V+LVF+NG + G+   HK++
Sbjct: 527 CGEELSYPNVFLVFLNGNILGVIRDHKKL 555



 Score =  179 bits (453), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 107/217 (49%), Positives = 126/217 (58%), Gaps = 30/217 (13%)

Query: 621 FLFFLGGGGILPSIQRQTTCLLTLILFSLNGDGKRGARNSQQYCD-CPDGYSSG---CQP 676
           FL FL G  IL  I+     + T  L    G        S    D C    S G   C+P
Sbjct: 537 FLVFLNGN-ILGVIRDHKKLVNTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRP 595

Query: 677 -------RPTFLNMHQ---FLGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVT 726
                  +P   N H      G++ F+DFL+E  +EYLDVNE ND +IA+ E  I    T
Sbjct: 596 YIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKD-T 654

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           THLEI PFTLLGVCAG              L+PYPHHNQ+PRNTYQCAMGKQAMG IGYN
Sbjct: 655 THLEIEPFTLLGVCAG--------------LIPYPHHNQSPRNTYQCAMGKQAMGTIGYN 700

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
           Q+NRIDTLMY L Y Q+PMV++KTI +  F KLPAG+
Sbjct: 701 QRNRIDTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQ 737



 Score =  115 bits (288), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/111 (56%), Positives = 79/111 (71%), Gaps = 14/111 (12%)

Query: 303 NIGIEHIAMFNGEELSS---PGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPH 359
           N+ I+ I   N E+++S   P  YL ++N I  G+         P++EESFN TR  +PH
Sbjct: 52  NVEIKKIMKAN-EKVTSDADPMWYLKYLN-IYVGL---------PDVEESFNVTRPVSPH 100

Query: 360 ECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
           ECRLRD+TYSAPITVDIEYTRGSQR++R+ L IGRMPIML+SS CVL  KT
Sbjct: 101 ECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKT 151



 Score =  112 bits (281), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 70/86 (81%), Gaps = 1/86 (1%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           KKT +++AR+ L+ST + H+PV    F+ K +Y AVM+RR++LA  D + +DDRDYYGNK
Sbjct: 302 KKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQGD-NKVDDRDYYGNK 360

Query: 509 RLELAGSLLSLMFEDVFKRFNSELKE 534
           RLELAG LLSL+FED+FK+FNSE+K+
Sbjct: 361 RLELAGQLLSLLFEDLFKKFNSEMKK 386



 Score = 98.6 bits (244), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 42/66 (63%), Positives = 56/66 (84%)

Query: 110 PEIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDI 169
           P + +KW+L+ +FLK KGLVK HIDSF+YFINVEIKK+M+AN  + SD DP++YLKYL+I
Sbjct: 21  PTVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMWYLKYLNI 80

Query: 170 HVGIAD 175
           +VG+ D
Sbjct: 81  YVGLPD 86


>gi|31873396|emb|CAD97689.1| hypothetical protein [Homo sapiens]
          Length = 1133

 Score =  427 bits (1098), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 193/265 (72%), Positives = 231/265 (87%), Gaps = 4/265 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMY L Y Q+PMV++KTI +  
Sbjct: 670  GLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIE 729

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNAT+AVMSYSGYDIEDAL++NKASLDRGFGRCLVY+N+KC LK+Y NQT D+
Sbjct: 730  FEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDK 789

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT----P 1088
            ++GP+L+A TRKP++RH  LD DGI +PGE++  +QVLVNKSMPT++   +  +     P
Sbjct: 790  VMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQP 849

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
            +YK+VP++YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GL
Sbjct: 850  QYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGL 909

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            IV QEDMPF +SGICPDIIMNPHG 
Sbjct: 910  IVPQEDMPFCDSGICPDIIMNPHGF 934



 Score =  318 bits (816), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 173/309 (55%), Positives = 213/309 (68%), Gaps = 26/309 (8%)

Query: 1079 SVSAISMATPEYKEVPVSYKGSVPSYLEKVLVSSNSE-----------DAFLIKMLLRQT 1127
            +V+ +S +  + ++  V  K S+     + LV  N++           D  +  ML   T
Sbjct: 740  TVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLDAAT 799

Query: 1128 RRP----EIGDKFSSRHGQKGVI--GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITE 1181
            R+P    EI D         G+   G  VE + +  N+S   P +   P       +  +
Sbjct: 800  RKPIWRHEILDA-------DGICSPGEKVENKQVLVNKS--MPTVTQIPLEGSNVPQQPQ 850

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
            YK+VP++YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GLI
Sbjct: 851  YKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLI 910

Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
            V QEDMPF +SGICPDIIMNPHG+PSRMTVGKLIELLAGKAG+++G +  GTAFGG+K+ 
Sbjct: 911  VPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSKVK 970

Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
            DV E+L+RHGYNY GKD   SGITGE  EAYIY GPVYYQKLKHMV DK+HAR+RGPR V
Sbjct: 971  DVCEDLVRHGYNYLGKDYVTSGITGEPFEAYIYFGPVYYQKLKHMVLDKMHARARGPRAV 1030

Query: 1362 LTRQPTGRR 1370
            LTRQPT  R
Sbjct: 1031 LTRQPTEGR 1039



 Score =  259 bits (662), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 125/209 (59%), Positives = 161/209 (77%), Gaps = 4/209 (1%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVNHM 192
           +D  DY+ N  ++   Q  + ++ D+    + K+      IAD++IPK +AAQFD+V HM
Sbjct: 351 VDDRDYYGNKRLELAGQLLSLLFEDL----FKKFNSEMKKIADQVIPKQRAAQFDVVKHM 406

Query: 193 RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVS 252
           RQD ITN +  AI TGNW+++RFKM+RQGVTQVLSRLSYIS LGMMTRI+SQFEKTRKVS
Sbjct: 407 RQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVS 466

Query: 253 GPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMF 312
           GPRSLQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT+ ++  ++K+  N+G+E + + 
Sbjct: 467 GPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLL 526

Query: 313 NGEELSSPGVYLVFVNGILAGITCHHKEV 341
            GEELS P V+LVF+NG + G+   HK++
Sbjct: 527 CGEELSYPNVFLVFLNGNILGVIRDHKKL 555



 Score =  179 bits (453), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 107/217 (49%), Positives = 126/217 (58%), Gaps = 30/217 (13%)

Query: 621 FLFFLGGGGILPSIQRQTTCLLTLILFSLNGDGKRGARNSQQYCD-CPDGYSSG---CQP 676
           FL FL G  IL  I+     + T  L    G        S    D C    S G   C+P
Sbjct: 537 FLVFLNGN-ILGVIRDHKKLVNTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRP 595

Query: 677 -------RPTFLNMHQ---FLGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVT 726
                  +P   N H      G++ F+DFL+E  +EYLDVNE ND +IA+ E  I    T
Sbjct: 596 YIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKD-T 654

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           THLEI PFTLLGVCAG              L+PYPHHNQ+PRNTYQCAMGKQAMG IGYN
Sbjct: 655 THLEIEPFTLLGVCAG--------------LIPYPHHNQSPRNTYQCAMGKQAMGTIGYN 700

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
           Q+NRIDTLMY L Y Q+PMV++KTI +  F KLPAG+
Sbjct: 701 QRNRIDTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQ 737



 Score =  115 bits (288), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/111 (56%), Positives = 79/111 (71%), Gaps = 14/111 (12%)

Query: 303 NIGIEHIAMFNGEELSS---PGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPH 359
           N+ I+ I   N E+++S   P  YL ++N I  G+         P++EESFN TR  +PH
Sbjct: 52  NVEIKKIMKAN-EKVTSDADPMWYLKYLN-IYVGL---------PDVEESFNVTRPVSPH 100

Query: 360 ECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
           ECRLRD+TYSAPITVDIEYTRGSQR++R+ L IGRMPIML+SS CVL  KT
Sbjct: 101 ECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKT 151



 Score =  112 bits (281), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 70/86 (81%), Gaps = 1/86 (1%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           KKT +++AR+ L+ST + H+PV    F+ K +Y AVM+RR++LA  D + +DDRDYYGNK
Sbjct: 302 KKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQGD-NKVDDRDYYGNK 360

Query: 509 RLELAGSLLSLMFEDVFKRFNSELKE 534
           RLELAG LLSL+FED+FK+FNSE+K+
Sbjct: 361 RLELAGQLLSLLFEDLFKKFNSEMKK 386



 Score = 98.6 bits (244), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 42/66 (63%), Positives = 56/66 (84%)

Query: 110 PEIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDI 169
           P + +KW+L+ +FLK KGLVK HIDSF+YFINVEIKK+M+AN  + SD DP++YLKYL+I
Sbjct: 21  PTVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMWYLKYLNI 80

Query: 170 HVGIAD 175
           +VG+ D
Sbjct: 81  YVGLPD 86


>gi|332241688|ref|XP_003270010.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 isoform 1
            [Nomascus leucogenys]
          Length = 1133

 Score =  427 bits (1098), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 193/265 (72%), Positives = 231/265 (87%), Gaps = 4/265 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMY L Y Q+PMV++KTI +  
Sbjct: 670  GLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIE 729

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNAT+AVMSYSGYDIEDAL++NKASLDRGFGRCLVY+N+KC LK+Y NQT D+
Sbjct: 730  FEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDK 789

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT----P 1088
            ++GP+L+A TRKP++RH  LD DGI +PGE++  +QVLVNKSMPT++   +  +     P
Sbjct: 790  VMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQP 849

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
            +YK+VP++YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GL
Sbjct: 850  QYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGL 909

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            IV QEDMPF +SGICPDIIMNPHG 
Sbjct: 910  IVPQEDMPFCDSGICPDIIMNPHGF 934



 Score =  320 bits (820), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 174/309 (56%), Positives = 214/309 (69%), Gaps = 26/309 (8%)

Query: 1079 SVSAISMATPEYKEVPVSYKGSVPSYLEKVLVSSNSE-----------DAFLIKMLLRQT 1127
            +V+ +S +  + ++  V  K S+     + LV  N++           D  +  ML   T
Sbjct: 740  TVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLDAAT 799

Query: 1128 RRP----EIGDKFSSRHGQKGVI--GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITE 1181
            R+P    EI D         G+   G  VE + +  N+S   P +   P       +  +
Sbjct: 800  RKPIWRHEILDA-------DGICSPGEKVENKQVLVNKS--MPTVTQIPLEGSNVPQQPQ 850

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
            YK+VP++YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GLI
Sbjct: 851  YKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLI 910

Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
            V QEDMPF +SGICPDIIMNPHG+PSRMTVGKLIELLAGKAG+++G +  GTAFGG+K+ 
Sbjct: 911  VPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSKVK 970

Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
            DV E+L+RHGYNY GKD   SGITGE LEAYIY GPVYYQKLKHMV DK+HAR+RGPR V
Sbjct: 971  DVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAV 1030

Query: 1362 LTRQPTGRR 1370
            LTRQPT  R
Sbjct: 1031 LTRQPTEGR 1039



 Score =  259 bits (662), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 125/209 (59%), Positives = 161/209 (77%), Gaps = 4/209 (1%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVNHM 192
           +D  DY+ N  ++   Q  + ++ D+    + K+      IAD++IPK +AAQFD+V HM
Sbjct: 351 VDDRDYYGNKRLELAGQLLSLLFEDL----FKKFNSEMKKIADQVIPKQRAAQFDVVKHM 406

Query: 193 RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVS 252
           RQD ITN +  AI TGNW+++RFKM+RQGVTQVLSRLSYIS LGMMTRI+SQFEKTRKVS
Sbjct: 407 RQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVS 466

Query: 253 GPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMF 312
           GPRSLQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT+ ++  ++K+  N+G+E + + 
Sbjct: 467 GPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLL 526

Query: 313 NGEELSSPGVYLVFVNGILAGITCHHKEV 341
            GEELS P V+LVF+NG + G+   HK++
Sbjct: 527 CGEELSYPNVFLVFLNGNILGVIRDHKKL 555



 Score =  179 bits (453), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 107/217 (49%), Positives = 126/217 (58%), Gaps = 30/217 (13%)

Query: 621 FLFFLGGGGILPSIQRQTTCLLTLILFSLNGDGKRGARNSQQYCD-CPDGYSSG---CQP 676
           FL FL G  IL  I+     + T  L    G        S    D C    S G   C+P
Sbjct: 537 FLVFLNGN-ILGVIRDHKKLVNTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRP 595

Query: 677 -------RPTFLNMHQ---FLGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVT 726
                  +P   N H      G++ F+DFL+E  +EYLDVNE ND +IA+ E  I    T
Sbjct: 596 YIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKD-T 654

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           THLEI PFTLLGVCAG              L+PYPHHNQ+PRNTYQCAMGKQAMG IGYN
Sbjct: 655 THLEIEPFTLLGVCAG--------------LIPYPHHNQSPRNTYQCAMGKQAMGTIGYN 700

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
           Q+NRIDTLMY L Y Q+PMV++KTI +  F KLPAG+
Sbjct: 701 QRNRIDTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQ 737



 Score =  115 bits (287), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/111 (56%), Positives = 79/111 (71%), Gaps = 14/111 (12%)

Query: 303 NIGIEHIAMFNGEELSS---PGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPH 359
           N+ I+ I   N E+++S   P  YL ++N I  G+         P++EESFN TR  +PH
Sbjct: 52  NVEIKKIMKAN-EKVTSDADPMWYLKYLN-IYVGL---------PDVEESFNVTRPVSPH 100

Query: 360 ECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
           ECRLRD+TYSAPITVDIEYTRGSQR++R+ L IGRMPIML+SS CVL  KT
Sbjct: 101 ECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKT 151



 Score =  112 bits (281), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 70/86 (81%), Gaps = 1/86 (1%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           KKT +++AR+ L+ST + H+PV    F+ K +Y AVM+RR++LA  D + +DDRDYYGNK
Sbjct: 302 KKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQGD-NKVDDRDYYGNK 360

Query: 509 RLELAGSLLSLMFEDVFKRFNSELKE 534
           RLELAG LLSL+FED+FK+FNSE+K+
Sbjct: 361 RLELAGQLLSLLFEDLFKKFNSEMKK 386



 Score = 98.6 bits (244), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 42/66 (63%), Positives = 56/66 (84%)

Query: 110 PEIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDI 169
           P + +KW+L+ +FLK KGLVK HIDSF+YFINVEIKK+M+AN  + SD DP++YLKYL+I
Sbjct: 21  PTVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMWYLKYLNI 80

Query: 170 HVGIAD 175
           +VG+ D
Sbjct: 81  YVGLPD 86


>gi|327272386|ref|XP_003220966.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Anolis
            carolinensis]
          Length = 1132

 Score =  427 bits (1098), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 193/264 (73%), Positives = 232/264 (87%), Gaps = 4/264 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMY L Y QRPMV++KTI +  
Sbjct: 669  GLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQRPMVKTKTIELIE 728

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNAT+AVMSYSGYDIEDAL++NKASLDRGFGRCLVY+N+KC LK+Y NQT D+
Sbjct: 729  FEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDK 788

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT----P 1088
            ++GP+L+A T KP++RH  LD DGI +PGE++  +QVLVNKSMPT++ + +  ++    P
Sbjct: 789  VMGPMLDAATHKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQTPLEGSSVPQQP 848

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
            +YK+VPV+YKG+  SY+EKV++SSN+EDAFLIK+LLRQTRRPEIGDKFSSRHGQKGV GL
Sbjct: 849  QYKDVPVTYKGATDSYIEKVMISSNAEDAFLIKILLRQTRRPEIGDKFSSRHGQKGVCGL 908

Query: 1149 IVEQEDMPFNESGICPDIIMNPHG 1172
            IV QEDMPF +SGICPDIIMNPHG
Sbjct: 909  IVPQEDMPFCDSGICPDIIMNPHG 932



 Score =  319 bits (818), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 157/224 (70%), Positives = 182/224 (81%), Gaps = 2/224 (0%)

Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNS 1206
            G  VE + +  N+S   P +   P       +  +YK+VPV+YKG+  SY+EKV++SSN+
Sbjct: 817  GEKVENKQVLVNKS--MPTVTQTPLEGSSVPQQPQYKDVPVTYKGATDSYIEKVMISSNA 874

Query: 1207 EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYP 1266
            EDAFLIK+LLRQTRRPEIGDKFSSRHGQKGV GLIV QEDMPF +SGICPDIIMNPHGYP
Sbjct: 875  EDAFLIKILLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGYP 934

Query: 1267 SRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITG 1326
            SRMTVGKLIELLAGKAG+++G +  GTAFGG+K+ DV E+LIR+GYNY GKD   SGITG
Sbjct: 935  SRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSKVKDVCEDLIRYGYNYLGKDYVTSGITG 994

Query: 1327 EALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRR 1370
            E LEAYIY GPVYYQKLKHMV DK+HAR+RGPR VLTRQPT  R
Sbjct: 995  EPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGR 1038



 Score =  258 bits (658), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 124/209 (59%), Positives = 161/209 (77%), Gaps = 4/209 (1%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVNHM 192
           +D  DY+ N  ++   Q  + ++ D+    + K+      IAD++IPK +AAQFD+V HM
Sbjct: 350 VDDRDYYGNKRLELAGQLLSLLFEDL----FKKFNSELKKIADQVIPKQRAAQFDVVKHM 405

Query: 193 RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVS 252
           RQD ITN +  AI TGNW+++RFKM+RQGVTQVLSRLSYIS LGMMTRI+SQFEKTRKVS
Sbjct: 406 RQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVS 465

Query: 253 GPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMF 312
           GPRSLQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT+ ++  ++K+  N+G+E + + 
Sbjct: 466 GPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKLAGNLGVEDVNLL 525

Query: 313 NGEELSSPGVYLVFVNGILAGITCHHKEV 341
            GEELS P V+LVF+NG + G+   H+++
Sbjct: 526 CGEELSYPNVFLVFLNGNILGVIRDHQKL 554



 Score =  180 bits (456), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 87/136 (63%), Positives = 101/136 (74%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G++ F+DFL+E  +EYLDVNE ND +IA+ E  I    TTHLEI PFTLLGVCAG     
Sbjct: 616 GYRNFEDFLHESLVEYLDVNEENDCNIALYEQTINKD-TTHLEIEPFTLLGVCAG----- 669

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMY L Y QRPMV+
Sbjct: 670 ---------LIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQRPMVK 720

Query: 808 SKTIRITNFHKLPAGK 823
           +KTI +  F KLPAG+
Sbjct: 721 TKTIELIEFEKLPAGQ 736



 Score =  116 bits (290), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 56/100 (56%), Positives = 77/100 (77%), Gaps = 1/100 (1%)

Query: 435 LSCKKLRQKRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALS 494
           L  K  RQ+ +   KKT +++AR+ L++T +AH+PV    F+ K +Y AVM+RR++LA  
Sbjct: 287 LGNKVRRQRMWGGPKKTKMEEARELLATTILAHVPVKEFNFRSKCIYTAVMVRRVILAQG 346

Query: 495 DPDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELKE 534
           D + +DDRDYYGNKRLELAG LLSL+FED+FK+FNSELK+
Sbjct: 347 D-NKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSELKK 385



 Score =  114 bits (285), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 62/111 (55%), Positives = 78/111 (70%), Gaps = 14/111 (12%)

Query: 303 NIGIEHIAMFNGEELSS---PGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPH 359
           N+ I+ I   N E+++S   P  YL ++N I  G          P++EESFN TR  +PH
Sbjct: 52  NVEIKKIMKAN-EKITSDADPMWYLKYLN-IYVGT---------PDVEESFNVTRPVSPH 100

Query: 360 ECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
           ECRLRD+TYSAPITVDIEYTRGSQR++R+ L +GRMPIML+SS CVL  KT
Sbjct: 101 ECRLRDMTYSAPITVDIEYTRGSQRIIRNALPVGRMPIMLRSSNCVLTGKT 151



 Score = 95.9 bits (237), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 42/64 (65%), Positives = 54/64 (84%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           + +KW+L+ +FLK KGLVK HIDSF+YFINVEIKK+M+AN  I SD DP++YLKYL+I+V
Sbjct: 23  VEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKITSDADPMWYLKYLNIYV 82

Query: 172 GIAD 175
           G  D
Sbjct: 83  GTPD 86


>gi|296212778|ref|XP_002752985.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Callithrix
            jacchus]
          Length = 1133

 Score =  427 bits (1098), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 193/265 (72%), Positives = 231/265 (87%), Gaps = 4/265 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMY L Y Q+PMV++KTI +  
Sbjct: 670  GLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIE 729

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNAT+AVMSYSGYDIEDAL++NKASLDRGFGRCLVY+N+KC LK+Y NQT D+
Sbjct: 730  FEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDK 789

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT----P 1088
            ++GP+L+A TRKP++RH  LD DGI +PGE++  +QVLVNKSMPT++   +  +     P
Sbjct: 790  VMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQP 849

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
            +YK+VP++YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GL
Sbjct: 850  QYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGL 909

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            IV QEDMPF +SGICPDIIMNPHG 
Sbjct: 910  IVPQEDMPFCDSGICPDIIMNPHGF 934



 Score =  319 bits (817), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 173/309 (55%), Positives = 214/309 (69%), Gaps = 26/309 (8%)

Query: 1079 SVSAISMATPEYKEVPVSYKGSVPSYLEKVLVSSNSE-----------DAFLIKMLLRQT 1127
            +V+ +S +  + ++  V  K S+     + LV  N++           D  +  ML   T
Sbjct: 740  TVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLDAAT 799

Query: 1128 RRP----EIGDKFSSRHGQKGVI--GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITE 1181
            R+P    EI D         G+   G  VE + +  N+S   P +   P       +  +
Sbjct: 800  RKPIWRHEILDA-------DGICSPGEKVENKQVLVNKS--MPTVTQIPLEGSNVPQQPQ 850

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
            YK+VP++YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GLI
Sbjct: 851  YKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLI 910

Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
            V QEDMPF +SGICPDIIMNPHG+PSRMTVGKLIELLAGKAG+++G +  GTAFGG+++ 
Sbjct: 911  VPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSRVK 970

Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
            DV E+L+RHGYNY GKD   SGITGE LEAYIY GPVYYQKLKHMV DK+HAR+RGPR V
Sbjct: 971  DVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAV 1030

Query: 1362 LTRQPTGRR 1370
            LTRQPT  R
Sbjct: 1031 LTRQPTEGR 1039



 Score =  259 bits (662), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 125/209 (59%), Positives = 161/209 (77%), Gaps = 4/209 (1%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVNHM 192
           +D  DY+ N  ++   Q  + ++ D+    + K+      IAD++IPK +AAQFD+V HM
Sbjct: 351 VDDRDYYGNKRLELAGQLLSLLFEDL----FKKFNSEMKKIADQVIPKQRAAQFDVVKHM 406

Query: 193 RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVS 252
           RQD ITN +  AI TGNW+++RFKM+RQGVTQVLSRLSYIS LGMMTRI+SQFEKTRKVS
Sbjct: 407 RQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVS 466

Query: 253 GPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMF 312
           GPRSLQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT+ ++  ++K+  N+G+E + + 
Sbjct: 467 GPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLL 526

Query: 313 NGEELSSPGVYLVFVNGILAGITCHHKEV 341
            GEELS P V+LVF+NG + G+   HK++
Sbjct: 527 CGEELSYPNVFLVFLNGNILGVIRDHKKL 555



 Score =  179 bits (453), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 107/217 (49%), Positives = 126/217 (58%), Gaps = 30/217 (13%)

Query: 621 FLFFLGGGGILPSIQRQTTCLLTLILFSLNGDGKRGARNSQQYCD-CPDGYSSG---CQP 676
           FL FL G  IL  I+     + T  L    G        S    D C    S G   C+P
Sbjct: 537 FLVFLNGN-ILGVIRDHKKLVNTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRP 595

Query: 677 -------RPTFLNMHQ---FLGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVT 726
                  +P   N H      G++ F+DFL+E  +EYLDVNE ND +IA+ E  I    T
Sbjct: 596 YIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKD-T 654

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           THLEI PFTLLGVCAG              L+PYPHHNQ+PRNTYQCAMGKQAMG IGYN
Sbjct: 655 THLEIEPFTLLGVCAG--------------LIPYPHHNQSPRNTYQCAMGKQAMGTIGYN 700

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
           Q+NRIDTLMY L Y Q+PMV++KTI +  F KLPAG+
Sbjct: 701 QRNRIDTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQ 737



 Score =  115 bits (287), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/111 (56%), Positives = 79/111 (71%), Gaps = 14/111 (12%)

Query: 303 NIGIEHIAMFNGEELSS---PGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPH 359
           N+ I+ I   N E+++S   P  YL ++N I  G+         P++EESFN TR  +PH
Sbjct: 52  NVEIKKIMKAN-EKVTSDADPMWYLKYLN-IYVGL---------PDVEESFNVTRPVSPH 100

Query: 360 ECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
           ECRLRD+TYSAPITVDIEYTRGSQR++R+ L IGRMPIML+SS CVL  KT
Sbjct: 101 ECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKT 151



 Score =  112 bits (281), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 70/86 (81%), Gaps = 1/86 (1%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           KKT +++AR+ L+ST + H+PV    F+ K +Y AVM+RR++LA  D + +DDRDYYGNK
Sbjct: 302 KKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQGD-NKVDDRDYYGNK 360

Query: 509 RLELAGSLLSLMFEDVFKRFNSELKE 534
           RLELAG LLSL+FED+FK+FNSE+K+
Sbjct: 361 RLELAGQLLSLLFEDLFKKFNSEMKK 386



 Score = 98.6 bits (244), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 42/66 (63%), Positives = 56/66 (84%)

Query: 110 PEIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDI 169
           P + +KW+L+ +FLK KGLVK HIDSF+YFINVEIKK+M+AN  + SD DP++YLKYL+I
Sbjct: 21  PTVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMWYLKYLNI 80

Query: 170 HVGIAD 175
           +VG+ D
Sbjct: 81  YVGLPD 86


>gi|24429617|gb|AAM18214.1| RNA polymerase III subunit RPC2 [Homo sapiens]
          Length = 1133

 Score =  427 bits (1098), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 193/265 (72%), Positives = 231/265 (87%), Gaps = 4/265 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMY L Y Q+PMV++KTI +  
Sbjct: 670  GLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIE 729

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNAT+AVMSYSGYDIEDAL++NKASLDRGFGRCLVY+N+KC LK+Y NQT D+
Sbjct: 730  FEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDK 789

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT----P 1088
            ++GP+L+A TRKP++RH  LD DGI +PGE++  +QVLVNKSMPT++   +  +     P
Sbjct: 790  VMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQP 849

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
            +YK+VP++YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GL
Sbjct: 850  QYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGL 909

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            IV QEDMPF +SGICPDIIMNPHG 
Sbjct: 910  IVPQEDMPFCDSGICPDIIMNPHGF 934



 Score =  320 bits (820), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 174/309 (56%), Positives = 214/309 (69%), Gaps = 26/309 (8%)

Query: 1079 SVSAISMATPEYKEVPVSYKGSVPSYLEKVLVSSNSE-----------DAFLIKMLLRQT 1127
            +V+ +S +  + ++  V  K S+     + LV  N++           D  +  ML   T
Sbjct: 740  TVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLDAAT 799

Query: 1128 RRP----EIGDKFSSRHGQKGVI--GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITE 1181
            R+P    EI D         G+   G  VE + +  N+S   P +   P       +  +
Sbjct: 800  RKPIWRHEILDA-------DGICSPGEKVENKQVLVNKS--MPTVTQIPLEGSNVPQQPQ 850

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
            YK+VP++YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GLI
Sbjct: 851  YKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLI 910

Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
            V QEDMPF +SGICPDIIMNPHG+PSRMTVGKLIELLAGKAG+++G +  GTAFGG+K+ 
Sbjct: 911  VPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSKVK 970

Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
            DV E+L+RHGYNY GKD   SGITGE LEAYIY GPVYYQKLKHMV DK+HAR+RGPR V
Sbjct: 971  DVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAV 1030

Query: 1362 LTRQPTGRR 1370
            LTRQPT  R
Sbjct: 1031 LTRQPTEGR 1039



 Score =  259 bits (662), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 125/209 (59%), Positives = 161/209 (77%), Gaps = 4/209 (1%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVNHM 192
           +D  DY+ N  ++   Q  + ++ D+    + K+      IAD++IPK +AAQFD+V HM
Sbjct: 351 VDDRDYYGNKRLELAGQLLSLLFEDL----FKKFNSEMKKIADQVIPKQRAAQFDVVKHM 406

Query: 193 RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVS 252
           RQD ITN +  AI TGNW+++RFKM+RQGVTQVLSRLSYIS LGMMTRI+SQFEKTRKVS
Sbjct: 407 RQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVS 466

Query: 253 GPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMF 312
           GPRSLQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT+ ++  ++K+  N+G+E + + 
Sbjct: 467 GPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLL 526

Query: 313 NGEELSSPGVYLVFVNGILAGITCHHKEV 341
            GEELS P V+LVF+NG + G+   HK++
Sbjct: 527 CGEELSYPNVFLVFLNGNILGVIRDHKKL 555



 Score =  179 bits (453), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 107/217 (49%), Positives = 126/217 (58%), Gaps = 30/217 (13%)

Query: 621 FLFFLGGGGILPSIQRQTTCLLTLILFSLNGDGKRGARNSQQYCD-CPDGYSSG---CQP 676
           FL FL G  IL  I+     + T  L    G        S    D C    S G   C+P
Sbjct: 537 FLVFLNGN-ILGVIRDHKKLVNTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRP 595

Query: 677 -------RPTFLNMHQ---FLGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVT 726
                  +P   N H      G++ F+DFL+E  +EYLDVNE ND +IA+ E  I    T
Sbjct: 596 YIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKD-T 654

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           THLEI PFTLLGVCAG              L+PYPHHNQ+PRNTYQCAMGKQAMG IGYN
Sbjct: 655 THLEIEPFTLLGVCAG--------------LIPYPHHNQSPRNTYQCAMGKQAMGTIGYN 700

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
           Q+NRIDTLMY L Y Q+PMV++KTI +  F KLPAG+
Sbjct: 701 QRNRIDTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQ 737



 Score =  115 bits (287), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/111 (56%), Positives = 79/111 (71%), Gaps = 14/111 (12%)

Query: 303 NIGIEHIAMFNGEELSS---PGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPH 359
           N+ I+ I   N E+++S   P  YL ++N I  G+         P++EESFN TR  +PH
Sbjct: 52  NVEIKKIMKAN-EKVTSDADPMWYLKYLN-IYVGL---------PDVEESFNVTRPVSPH 100

Query: 360 ECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
           ECRLRD+TYSAPITVDIEYTRGSQR++R+ L IGRMPIML+SS CVL  KT
Sbjct: 101 ECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKT 151



 Score =  112 bits (281), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 70/86 (81%), Gaps = 1/86 (1%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           KKT +++AR+ L+ST + H+PV    F+ K +Y AVM+RR++LA  D + +DDRDYYGNK
Sbjct: 302 KKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQGD-NKVDDRDYYGNK 360

Query: 509 RLELAGSLLSLMFEDVFKRFNSELKE 534
           RLELAG LLSL+FED+FK+FNSE+K+
Sbjct: 361 RLELAGQLLSLLFEDLFKKFNSEMKK 386



 Score = 98.6 bits (244), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 42/66 (63%), Positives = 56/66 (84%)

Query: 110 PEIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDI 169
           P + +KW+L+ +FLK KGLVK HIDSF+YFINVEIKK+M+AN  + SD DP++YLKYL+I
Sbjct: 21  PTVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMWYLKYLNI 80

Query: 170 HVGIAD 175
           +VG+ D
Sbjct: 81  YVGLPD 86


>gi|119618187|gb|EAW97781.1| polymerase (RNA) III (DNA directed) polypeptide B, isoform CRA_b
            [Homo sapiens]
          Length = 1177

 Score =  427 bits (1098), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 193/265 (72%), Positives = 231/265 (87%), Gaps = 4/265 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMY L Y Q+PMV++KTI +  
Sbjct: 714  GLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIE 773

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNAT+AVMSYSGYDIEDAL++NKASLDRGFGRCLVY+N+KC LK+Y NQT D+
Sbjct: 774  FEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDK 833

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT----P 1088
            ++GP+L+A TRKP++RH  LD DGI +PGE++  +QVLVNKSMPT++   +  +     P
Sbjct: 834  VMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQP 893

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
            +YK+VP++YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GL
Sbjct: 894  QYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGL 953

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            IV QEDMPF +SGICPDIIMNPHG 
Sbjct: 954  IVPQEDMPFCDSGICPDIIMNPHGF 978



 Score =  320 bits (821), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 174/309 (56%), Positives = 214/309 (69%), Gaps = 26/309 (8%)

Query: 1079 SVSAISMATPEYKEVPVSYKGSVPSYLEKVLVSSNSE-----------DAFLIKMLLRQT 1127
            +V+ +S +  + ++  V  K S+     + LV  N++           D  +  ML   T
Sbjct: 784  TVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLDAAT 843

Query: 1128 RRP----EIGDKFSSRHGQKGVI--GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITE 1181
            R+P    EI D         G+   G  VE + +  N+S   P +   P       +  +
Sbjct: 844  RKPIWRHEILDA-------DGICSPGEKVENKQVLVNKS--MPTVTQIPLEGSNVPQQPQ 894

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
            YK+VP++YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GLI
Sbjct: 895  YKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLI 954

Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
            V QEDMPF +SGICPDIIMNPHG+PSRMTVGKLIELLAGKAG+++G +  GTAFGG+K+ 
Sbjct: 955  VPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSKVK 1014

Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
            DV E+L+RHGYNY GKD   SGITGE LEAYIY GPVYYQKLKHMV DK+HAR+RGPR V
Sbjct: 1015 DVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAV 1074

Query: 1362 LTRQPTGRR 1370
            LTRQPT  R
Sbjct: 1075 LTRQPTEGR 1083



 Score =  253 bits (647), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 124/204 (60%), Positives = 156/204 (76%), Gaps = 4/204 (1%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVNHM 192
           +D  DY+ N  ++   Q  + ++ D+    + K+      IAD++IPK +AAQFD+V HM
Sbjct: 343 VDDRDYYGNKRLELAGQLLSLLFEDL----FKKFNSEMKKIADQVIPKQRAAQFDVVKHM 398

Query: 193 RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVS 252
           RQD ITN +  AI TGNW+++RFKM+RQGVTQVLSRLSYIS LGMMTRI+SQFEKTRKVS
Sbjct: 399 RQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVS 458

Query: 253 GPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMF 312
           GPRSLQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT+ ++  ++K+  N+G+E + + 
Sbjct: 459 GPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLL 518

Query: 313 NGEELSSPGVYLVFVNGILAGITC 336
            GEELS P V+LVF+NG     TC
Sbjct: 519 CGEELSYPNVFLVFLNGGYIIETC 542



 Score =  164 bits (414), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 87/163 (53%), Positives = 100/163 (61%), Gaps = 45/163 (27%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIR----------------PGV---------- 725
           F+DFL+E  +EYLDVNE ND +IA+ E  I                 PG           
Sbjct: 633 FEDFLHESLVEYLDVNEENDCNIALYEHTINKLECSGMISAHCNLRLPGSSNSPASASQV 692

Query: 726 -----TTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAM 780
                TTHLEI PFTLLGVCA              GL+PYPHHNQ+PRNTYQCAMGKQAM
Sbjct: 693 AATTDTTHLEIEPFTLLGVCA--------------GLIPYPHHNQSPRNTYQCAMGKQAM 738

Query: 781 GCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
           G IGYNQ+NRIDTLMY L Y Q+PMV++KTI +  F KLPAG+
Sbjct: 739 GTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQ 781



 Score =  115 bits (287), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/111 (56%), Positives = 79/111 (71%), Gaps = 14/111 (12%)

Query: 303 NIGIEHIAMFNGEELSS---PGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPH 359
           N+ I+ I   N E+++S   P  YL ++N I  G+         P++EESFN TR  +PH
Sbjct: 52  NVEIKKIMKAN-EKVTSDADPMWYLKYLN-IYVGL---------PDVEESFNVTRPVSPH 100

Query: 360 ECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
           ECRLRD+TYSAPITVDIEYTRGSQR++R+ L IGRMPIML+SS CVL  KT
Sbjct: 101 ECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKT 151



 Score =  112 bits (281), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 70/86 (81%), Gaps = 1/86 (1%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           KKT +++AR+ L+ST + H+PV    F+ K +Y AVM+RR++LA  D + +DDRDYYGNK
Sbjct: 294 KKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQGD-NKVDDRDYYGNK 352

Query: 509 RLELAGSLLSLMFEDVFKRFNSELKE 534
           RLELAG LLSL+FED+FK+FNSE+K+
Sbjct: 353 RLELAGQLLSLLFEDLFKKFNSEMKK 378



 Score = 98.6 bits (244), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 42/66 (63%), Positives = 56/66 (84%)

Query: 110 PEIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDI 169
           P + +KW+L+ +FLK KGLVK HIDSF+YFINVEIKK+M+AN  + SD DP++YLKYL+I
Sbjct: 21  PTVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMWYLKYLNI 80

Query: 170 HVGIAD 175
           +VG+ D
Sbjct: 81  YVGLPD 86


>gi|238908505|ref|NP_001154180.1| DNA-directed RNA polymerase III subunit RPC2 isoform 2 [Homo sapiens]
 gi|114646705|ref|XP_509335.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 isoform 4
            [Pan troglodytes]
 gi|332241690|ref|XP_003270011.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 isoform 2
            [Nomascus leucogenys]
 gi|395744769|ref|XP_003778157.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 isoform 2
            [Pongo abelii]
 gi|397525260|ref|XP_003832592.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 isoform 2
            [Pan paniscus]
          Length = 1075

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 193/265 (72%), Positives = 231/265 (87%), Gaps = 4/265 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMY L Y Q+PMV++KTI +  
Sbjct: 612  GLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIE 671

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNAT+AVMSYSGYDIEDAL++NKASLDRGFGRCLVY+N+KC LK+Y NQT D+
Sbjct: 672  FEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDK 731

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT----P 1088
            ++GP+L+A TRKP++RH  LD DGI +PGE++  +QVLVNKSMPT++   +  +     P
Sbjct: 732  VMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQP 791

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
            +YK+VP++YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GL
Sbjct: 792  QYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGL 851

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            IV QEDMPF +SGICPDIIMNPHG 
Sbjct: 852  IVPQEDMPFCDSGICPDIIMNPHGF 876



 Score =  320 bits (820), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 174/309 (56%), Positives = 214/309 (69%), Gaps = 26/309 (8%)

Query: 1079 SVSAISMATPEYKEVPVSYKGSVPSYLEKVLVSSNSE-----------DAFLIKMLLRQT 1127
            +V+ +S +  + ++  V  K S+     + LV  N++           D  +  ML   T
Sbjct: 682  TVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLDAAT 741

Query: 1128 RRP----EIGDKFSSRHGQKGVI--GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITE 1181
            R+P    EI D         G+   G  VE + +  N+S   P +   P       +  +
Sbjct: 742  RKPIWRHEILDA-------DGICSPGEKVENKQVLVNKS--MPTVTQIPLEGSNVPQQPQ 792

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
            YK+VP++YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GLI
Sbjct: 793  YKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLI 852

Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
            V QEDMPF +SGICPDIIMNPHG+PSRMTVGKLIELLAGKAG+++G +  GTAFGG+K+ 
Sbjct: 853  VPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSKVK 912

Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
            DV E+L+RHGYNY GKD   SGITGE LEAYIY GPVYYQKLKHMV DK+HAR+RGPR V
Sbjct: 913  DVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAV 972

Query: 1362 LTRQPTGRR 1370
            LTRQPT  R
Sbjct: 973  LTRQPTEGR 981



 Score =  259 bits (663), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 125/209 (59%), Positives = 161/209 (77%), Gaps = 4/209 (1%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVNHM 192
           +D  DY+ N  ++   Q  + ++ D+    + K+      IAD++IPK +AAQFD+V HM
Sbjct: 293 VDDRDYYGNKRLELAGQLLSLLFEDL----FKKFNSEMKKIADQVIPKQRAAQFDVVKHM 348

Query: 193 RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVS 252
           RQD ITN +  AI TGNW+++RFKM+RQGVTQVLSRLSYIS LGMMTRI+SQFEKTRKVS
Sbjct: 349 RQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVS 408

Query: 253 GPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMF 312
           GPRSLQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT+ ++  ++K+  N+G+E + + 
Sbjct: 409 GPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLL 468

Query: 313 NGEELSSPGVYLVFVNGILAGITCHHKEV 341
            GEELS P V+LVF+NG + G+   HK++
Sbjct: 469 CGEELSYPNVFLVFLNGNILGVIRDHKKL 497



 Score =  179 bits (453), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 89/150 (59%), Positives = 105/150 (70%), Gaps = 18/150 (12%)

Query: 677 RPTFLNMHQ---FLGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAP 733
           +P   N H      G++ F+DFL+E  +EYLDVNE ND +IA+ E  I    TTHLEI P
Sbjct: 545 KPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKD-TTHLEIEP 603

Query: 734 FTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDT 793
           FTLLGVCAG              L+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDT
Sbjct: 604 FTLLGVCAG--------------LIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDT 649

Query: 794 LMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
           LMY L Y Q+PMV++KTI +  F KLPAG+
Sbjct: 650 LMYLLAYPQKPMVKTKTIELIEFEKLPAGQ 679



 Score =  114 bits (285), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 57/93 (61%), Positives = 69/93 (74%), Gaps = 10/93 (10%)

Query: 318 SSPGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIE 377
           + P  YL ++N I  G+         P++EESFN TR  +PHECRLRD+TYSAPITVDIE
Sbjct: 11  ADPMWYLKYLN-IYVGL---------PDVEESFNVTRPVSPHECRLRDMTYSAPITVDIE 60

Query: 378 YTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
           YTRGSQR++R+ L IGRMPIML+SS CVL  KT
Sbjct: 61  YTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKT 93



 Score =  112 bits (281), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 70/86 (81%), Gaps = 1/86 (1%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           KKT +++AR+ L+ST + H+PV    F+ K +Y AVM+RR++LA  D + +DDRDYYGNK
Sbjct: 244 KKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQGD-NKVDDRDYYGNK 302

Query: 509 RLELAGSLLSLMFEDVFKRFNSELKE 534
           RLELAG LLSL+FED+FK+FNSE+K+
Sbjct: 303 RLELAGQLLSLLFEDLFKKFNSEMKK 328



 Score = 42.0 bits (97), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 16/28 (57%), Positives = 23/28 (82%)

Query: 148 MQANANIYSDVDPLFYLKYLDIHVGIAD 175
           M+AN  + SD DP++YLKYL+I+VG+ D
Sbjct: 1   MKANEKVTSDADPMWYLKYLNIYVGLPD 28


>gi|431905258|gb|ELK10303.1| DNA-directed RNA polymerase III subunit RPC2 [Pteropus alecto]
          Length = 1207

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 193/265 (72%), Positives = 231/265 (87%), Gaps = 4/265 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMY L Y Q+PMV++KTI +  
Sbjct: 744  GLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIE 803

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNAT+AVMSYSGYDIEDAL++NKASLDRGFGRCLVY+N+KC LK+Y NQT D+
Sbjct: 804  FEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDK 863

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT----P 1088
            ++GP+L+A TRKP++RH  LD DGI +PGE++  +QVLVNKSMPT++   +  +     P
Sbjct: 864  VMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQP 923

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
            +YK+VP++YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GL
Sbjct: 924  QYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGL 983

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            IV QEDMPF +SGICPDIIMNPHG 
Sbjct: 984  IVPQEDMPFCDSGICPDIIMNPHGF 1008



 Score =  300 bits (769), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 167/309 (54%), Positives = 207/309 (66%), Gaps = 26/309 (8%)

Query: 1079 SVSAISMATPEYKEVPVSYKGSVPSYLEKVLVSSNSE-----------DAFLIKMLLRQT 1127
            +V+ +S +  + ++  V  K S+     + LV  N++           D  +  ML   T
Sbjct: 814  TVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLDAAT 873

Query: 1128 RRP----EIGDKFSSRHGQKGVI--GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITE 1181
            R+P    EI D         G+   G  VE + +  N+S   P +   P       +  +
Sbjct: 874  RKPIWRHEILDA-------DGICSPGEKVENKQVLVNKS--MPTVTQIPLEGSNVPQQPQ 924

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
            YK+VP++YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GLI
Sbjct: 925  YKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLI 984

Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
            V QEDMPF +SGICPDIIMNPHG+PSRMTVGKLIELLAGKAG+++G +  GTAFGG+K+ 
Sbjct: 985  VPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSKVK 1044

Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
            DV E+L+RHGYNY GKD   SGITGE LEAYIY GPVYYQKLKHMV DK+H R R  +  
Sbjct: 1045 DVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHGRRRRSKQP 1104

Query: 1362 LTRQPTGRR 1370
            L  QPT  R
Sbjct: 1105 LFGQPTEGR 1113



 Score =  259 bits (662), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 125/209 (59%), Positives = 161/209 (77%), Gaps = 4/209 (1%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVNHM 192
           +D  DY+ N  ++   Q  + ++ D+    + K+      IAD++IPK +AAQFD+V HM
Sbjct: 425 VDDRDYYGNKRLELAGQLLSLLFEDL----FKKFNSEMKKIADQVIPKQRAAQFDVVKHM 480

Query: 193 RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVS 252
           RQD ITN +  AI TGNW+++RFKM+RQGVTQVLSRLSYIS LGMMTRI+SQFEKTRKVS
Sbjct: 481 RQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVS 540

Query: 253 GPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMF 312
           GPRSLQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT+ ++  ++K+  N+G+E + + 
Sbjct: 541 GPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLL 600

Query: 313 NGEELSSPGVYLVFVNGILAGITCHHKEV 341
            GEELS P V+LVF+NG + G+   HK++
Sbjct: 601 CGEELSYPNVFLVFLNGNILGVIRDHKKL 629



 Score =  179 bits (453), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 89/150 (59%), Positives = 105/150 (70%), Gaps = 18/150 (12%)

Query: 677 RPTFLNMHQ---FLGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAP 733
           +P   N H      G++ F+DFL+E  +EYLDVNE ND +IA+ E  I    TTHLEI P
Sbjct: 677 KPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKD-TTHLEIEP 735

Query: 734 FTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDT 793
           FTLLGVCAG              L+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDT
Sbjct: 736 FTLLGVCAG--------------LIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDT 781

Query: 794 LMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
           LMY L Y Q+PMV++KTI +  F KLPAG+
Sbjct: 782 LMYLLAYPQKPMVKTKTIELIEFEKLPAGQ 811



 Score =  112 bits (281), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 70/86 (81%), Gaps = 1/86 (1%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           KKT +++AR+ L+ST + H+PV    F+ K +Y AVM+RR++LA  D + +DDRDYYGNK
Sbjct: 376 KKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQGD-NKVDDRDYYGNK 434

Query: 509 RLELAGSLLSLMFEDVFKRFNSELKE 534
           RLELAG LLSL+FED+FK+FNSE+K+
Sbjct: 435 RLELAGQLLSLLFEDLFKKFNSEMKK 460



 Score = 90.5 bits (223), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 44/60 (73%), Positives = 50/60 (83%), Gaps = 1/60 (1%)

Query: 351 NYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
           +YT   TP  CRLRD+TYSAPITVDIEYTRGSQR++R+ L IGRMPIML+SS CVL  KT
Sbjct: 167 DYTSSHTP-VCRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKT 225



 Score = 80.9 bits (198), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 35/50 (70%), Positives = 44/50 (88%)

Query: 126 KGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIAD 175
           KGLVK HIDSF+YFINVEIKK+M+AN  + SD DP++YLKYL+I+VG+ D
Sbjct: 26  KGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMWYLKYLNIYVGLPD 75


>gi|193784141|dbj|BAG53685.1| unnamed protein product [Homo sapiens]
          Length = 1075

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 193/265 (72%), Positives = 231/265 (87%), Gaps = 4/265 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMY L Y Q+PMV++KTI +  
Sbjct: 612  GLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIE 671

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNAT+AVMSYSGYDIEDAL++NKASLDRGFGRCLVY+N+KC LK+Y NQT D+
Sbjct: 672  FEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDK 731

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT----P 1088
            ++GP+L+A TRKP++RH  LD DGI +PGE++  +QVLVNKSMPT++   +  +     P
Sbjct: 732  VMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQP 791

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
            +YK+VP++YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GL
Sbjct: 792  QYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGL 851

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            IV QEDMPF +SGICPDIIMNPHG 
Sbjct: 852  IVPQEDMPFCDSGICPDIIMNPHGF 876



 Score =  320 bits (820), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 174/309 (56%), Positives = 214/309 (69%), Gaps = 26/309 (8%)

Query: 1079 SVSAISMATPEYKEVPVSYKGSVPSYLEKVLVSSNSE-----------DAFLIKMLLRQT 1127
            +V+ +S +  + ++  V  K S+     + LV  N++           D  +  ML   T
Sbjct: 682  TVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLDAAT 741

Query: 1128 RRP----EIGDKFSSRHGQKGVI--GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITE 1181
            R+P    EI D         G+   G  VE + +  N+S   P +   P       +  +
Sbjct: 742  RKPIWRHEILDA-------DGICSPGEKVENKQVLVNKS--MPTVTQIPLEGSNVPQQPQ 792

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
            YK+VP++YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GLI
Sbjct: 793  YKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLI 852

Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
            V QEDMPF +SGICPDIIMNPHG+PSRMTVGKLIELLAGKAG+++G +  GTAFGG+K+ 
Sbjct: 853  VPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSKVK 912

Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
            DV E+L+RHGYNY GKD   SGITGE LEAYIY GPVYYQKLKHMV DK+HAR+RGPR V
Sbjct: 913  DVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAV 972

Query: 1362 LTRQPTGRR 1370
            LTRQPT  R
Sbjct: 973  LTRQPTEGR 981



 Score =  259 bits (662), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 125/209 (59%), Positives = 161/209 (77%), Gaps = 4/209 (1%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVNHM 192
           +D  DY+ N  ++   Q  + ++ D+    + K+      IAD++IPK +AAQFD+V HM
Sbjct: 293 VDDRDYYGNKRLELAGQLLSLLFEDL----FKKFNSEMKKIADQVIPKQRAAQFDVVKHM 348

Query: 193 RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVS 252
           RQD ITN +  AI TGNW+++RFKM+RQGVTQVLSRLSYIS LGMMTRI+SQFEKTRKVS
Sbjct: 349 RQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVS 408

Query: 253 GPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMF 312
           GPRSLQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT+ ++  ++K+  N+G+E + + 
Sbjct: 409 GPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLL 468

Query: 313 NGEELSSPGVYLVFVNGILAGITCHHKEV 341
            GEELS P V+LVF+NG + G+   HK++
Sbjct: 469 CGEELSYPNVFLVFLNGNILGVIRDHKKL 497



 Score =  180 bits (456), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 89/150 (59%), Positives = 106/150 (70%), Gaps = 18/150 (12%)

Query: 677 RPTFLNMHQ---FLGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAP 733
           +P  +N H      G++ F+DFL+E  +EYLDVNE ND +IA+ E  I    TTHLEI P
Sbjct: 545 KPAVINKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKD-TTHLEIEP 603

Query: 734 FTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDT 793
           FTLLGVCAG              L+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDT
Sbjct: 604 FTLLGVCAG--------------LIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDT 649

Query: 794 LMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
           LMY L Y Q+PMV++KTI +  F KLPAG+
Sbjct: 650 LMYLLAYPQKPMVKTKTIELIEFEKLPAGQ 679



 Score =  114 bits (285), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 57/93 (61%), Positives = 69/93 (74%), Gaps = 10/93 (10%)

Query: 318 SSPGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIE 377
           + P  YL ++N I  G+         P++EESFN TR  +PHECRLRD+TYSAPITVDIE
Sbjct: 11  ADPMWYLKYLN-IYVGL---------PDVEESFNVTRPVSPHECRLRDMTYSAPITVDIE 60

Query: 378 YTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
           YTRGSQR++R+ L IGRMPIML+SS CVL  KT
Sbjct: 61  YTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKT 93



 Score =  112 bits (281), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 70/86 (81%), Gaps = 1/86 (1%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           KKT +++AR+ L+ST + H+PV    F+ K +Y AVM+RR++LA  D + +DDRDYYGNK
Sbjct: 244 KKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQGD-NKVDDRDYYGNK 302

Query: 509 RLELAGSLLSLMFEDVFKRFNSELKE 534
           RLELAG LLSL+FED+FK+FNSE+K+
Sbjct: 303 RLELAGQLLSLLFEDLFKKFNSEMKK 328



 Score = 42.0 bits (97), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 16/28 (57%), Positives = 23/28 (82%)

Query: 148 MQANANIYSDVDPLFYLKYLDIHVGIAD 175
           M+AN  + SD DP++YLKYL+I+VG+ D
Sbjct: 1   MKANEKVTSDADPMWYLKYLNIYVGLPD 28


>gi|281338612|gb|EFB14196.1| hypothetical protein PANDA_017492 [Ailuropoda melanoleuca]
          Length = 1058

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 193/265 (72%), Positives = 231/265 (87%), Gaps = 4/265 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMY L Y Q+PMV++KTI +  
Sbjct: 595  GLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIE 654

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNAT+AVMSYSGYDIEDAL++NKASLDRGFGRCLVY+N+KC LK+Y NQT D+
Sbjct: 655  FEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDK 714

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT----P 1088
            ++GP+L+A TRKP++RH  LD DGI +PGE++  +QVLVNKSMPT++   +  +     P
Sbjct: 715  VMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQP 774

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
            +YK+VP++YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GL
Sbjct: 775  QYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGL 834

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            IV QEDMPF +SGICPDIIMNPHG 
Sbjct: 835  IVPQEDMPFCDSGICPDIIMNPHGF 859



 Score =  320 bits (819), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 174/311 (55%), Positives = 215/311 (69%), Gaps = 26/311 (8%)

Query: 1079 SVSAISMATPEYKEVPVSYKGSVPSYLEKVLVSSNSE-----------DAFLIKMLLRQT 1127
            +V+ +S +  + ++  V  K S+     + LV  N++           D  +  ML   T
Sbjct: 665  TVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLDAAT 724

Query: 1128 RRP----EIGDKFSSRHGQKGVI--GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITE 1181
            R+P    EI D         G+   G  VE + +  N+S   P +   P       +  +
Sbjct: 725  RKPIWRHEILDA-------DGICSPGEKVENKQVLVNKS--MPTVTQIPLEGSNVPQQPQ 775

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
            YK+VP++YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GLI
Sbjct: 776  YKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLI 835

Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
            V QEDMPF +SGICPDIIMNPHG+PSRMTVGKLIELLAGKAG+++G +  GTAFGG+K+ 
Sbjct: 836  VPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSKVK 895

Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
            DV E+L+RHGYNY GKD   SGITGE LEAYIY GPVYYQKLKHMV DK+HAR+RGPR V
Sbjct: 896  DVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAV 955

Query: 1362 LTRQPTGRRWK 1372
            LTRQPT  R +
Sbjct: 956  LTRQPTEGRSR 966



 Score =  259 bits (662), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 125/209 (59%), Positives = 161/209 (77%), Gaps = 4/209 (1%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVNHM 192
           +D  DY+ N  ++   Q  + ++ D+    + K+      IAD++IPK +AAQFD+V HM
Sbjct: 276 VDDRDYYGNKRLELAGQLLSLLFEDL----FKKFNSEMKKIADQVIPKQRAAQFDVVKHM 331

Query: 193 RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVS 252
           RQD ITN +  AI TGNW+++RFKM+RQGVTQVLSRLSYIS LGMMTRI+SQFEKTRKVS
Sbjct: 332 RQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVS 391

Query: 253 GPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMF 312
           GPRSLQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT+ ++  ++K+  N+G+E + + 
Sbjct: 392 GPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLL 451

Query: 313 NGEELSSPGVYLVFVNGILAGITCHHKEV 341
            GEELS P V+LVF+NG + G+   HK++
Sbjct: 452 CGEELSYPNVFLVFLNGNILGVIRDHKKL 480



 Score =  178 bits (452), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 89/150 (59%), Positives = 105/150 (70%), Gaps = 18/150 (12%)

Query: 677 RPTFLNMHQ---FLGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAP 733
           +P   N H      G++ F+DFL+E  +EYLDVNE ND +IA+ E  I    TTHLEI P
Sbjct: 528 KPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKD-TTHLEIEP 586

Query: 734 FTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDT 793
           FTLLGVCAG              L+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDT
Sbjct: 587 FTLLGVCAG--------------LIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDT 632

Query: 794 LMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
           LMY L Y Q+PMV++KTI +  F KLPAG+
Sbjct: 633 LMYLLAYPQKPMVKTKTIELIEFEKLPAGQ 662



 Score =  114 bits (284), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 51/67 (76%), Positives = 59/67 (88%)

Query: 344 PEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSK 403
           P++EESFN TR  +PHECRLRD+TYSAPITVDIEYTRGSQR++R+ L IGRMPIML+SS 
Sbjct: 10  PDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSN 69

Query: 404 CVLRNKT 410
           CVL  KT
Sbjct: 70  CVLTGKT 76



 Score =  112 bits (281), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 70/86 (81%), Gaps = 1/86 (1%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           KKT +++AR+ L+ST + H+PV    F+ K +Y AVM+RR++LA  D + +DDRDYYGNK
Sbjct: 227 KKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQGD-NKVDDRDYYGNK 285

Query: 509 RLELAGSLLSLMFEDVFKRFNSELKE 534
           RLELAG LLSL+FED+FK+FNSE+K+
Sbjct: 286 RLELAGQLLSLLFEDLFKKFNSEMKK 311


>gi|344266576|ref|XP_003405356.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
            subunit RPC2-like [Loxodonta africana]
          Length = 1133

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 193/265 (72%), Positives = 231/265 (87%), Gaps = 4/265 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMY L Y Q+PMV++KTI +  
Sbjct: 670  GLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIE 729

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNAT+AVMSYSGYDIEDAL++NKASLDRGFGRCLVY+N+KC LK+Y NQT D+
Sbjct: 730  FEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDK 789

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT----P 1088
            ++GP+L+A TRKP++RH  LD DGI +PGE++  +QVLVNKSMPT++   +  +     P
Sbjct: 790  VMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNIPQQP 849

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
            +YK+VP++YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GL
Sbjct: 850  QYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGL 909

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            IV QEDMPF +SGICPDIIMNPHG 
Sbjct: 910  IVPQEDMPFCDSGICPDIIMNPHGF 934



 Score =  319 bits (818), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 174/309 (56%), Positives = 214/309 (69%), Gaps = 26/309 (8%)

Query: 1079 SVSAISMATPEYKEVPVSYKGSVPSYLEKVLVSSNSE-----------DAFLIKMLLRQT 1127
            +V+ +S +  + ++  V  K S+     + LV  N++           D  +  ML   T
Sbjct: 740  TVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLDAAT 799

Query: 1128 RRP----EIGDKFSSRHGQKGVI--GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITE 1181
            R+P    EI D         G+   G  VE + +  N+S   P +   P       +  +
Sbjct: 800  RKPIWRHEILDA-------DGICSPGEKVENKQVLVNKS--MPTVTQIPLEGSNIPQQPQ 850

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
            YK+VP++YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GLI
Sbjct: 851  YKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLI 910

Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
            V QEDMPF +SGICPDIIMNPHG+PSRMTVGKLIELLAGKAG+++G +  GTAFGG+K+ 
Sbjct: 911  VPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGKFHYGTAFGGSKVK 970

Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
            DV E+L+RHGYNY GKD   SGITGE LEAYIY GPVYYQKLKHMV DK+HAR+RGPR V
Sbjct: 971  DVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAV 1030

Query: 1362 LTRQPTGRR 1370
            LTRQPT  R
Sbjct: 1031 LTRQPTEGR 1039



 Score =  259 bits (661), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 125/209 (59%), Positives = 161/209 (77%), Gaps = 4/209 (1%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVNHM 192
           +D  DY+ N  ++   Q  + ++ D+    + K+      IAD++IPK +AAQFD+V HM
Sbjct: 351 VDDRDYYGNKRLELAGQLLSLLFEDL----FKKFNSEMKKIADQVIPKQRAAQFDVVKHM 406

Query: 193 RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVS 252
           RQD ITN +  AI TGNW+++RFKM+RQGVTQVLSRLSYIS LGMMTRI+SQFEKTRKVS
Sbjct: 407 RQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVS 466

Query: 253 GPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMF 312
           GPRSLQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT+ ++  ++K+  N+G+E + + 
Sbjct: 467 GPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLL 526

Query: 313 NGEELSSPGVYLVFVNGILAGITCHHKEV 341
            GEELS P V+LVF+NG + G+   HK++
Sbjct: 527 CGEELSYPNVFLVFLNGNILGVIRDHKKL 555



 Score =  178 bits (451), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 89/150 (59%), Positives = 107/150 (71%), Gaps = 16/150 (10%)

Query: 675 QPRPTFLNMHQFL-GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAP 733
           +P  T  +M +   G++ F+DFL+E  +EYLDVNE ND +IA+ E  I    TTHLEI P
Sbjct: 603 KPAVTAKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKD-TTHLEIEP 661

Query: 734 FTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDT 793
           FTLLGVCAG              L+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDT
Sbjct: 662 FTLLGVCAG--------------LIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDT 707

Query: 794 LMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
           LMY L Y Q+PMV++KTI +  F KLPAG+
Sbjct: 708 LMYLLAYPQKPMVKTKTIELIEFEKLPAGQ 737



 Score =  114 bits (285), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 57/93 (61%), Positives = 69/93 (74%), Gaps = 10/93 (10%)

Query: 318 SSPGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIE 377
           + P  YL ++N I  G+         P++EESFN TR  +PHECRLRD+TYSAPITVDIE
Sbjct: 69  ADPMWYLKYLN-IYVGL---------PDVEESFNVTRPVSPHECRLRDMTYSAPITVDIE 118

Query: 378 YTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
           YTRGSQR++R+ L IGRMPIML+SS CVL  KT
Sbjct: 119 YTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKT 151



 Score =  112 bits (279), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 54/98 (55%), Positives = 76/98 (77%), Gaps = 3/98 (3%)

Query: 439 KLRQKRFQTY--KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDP 496
           K+R++R      KKT +++AR+ L+ST + H+PV    F+ K +Y AVM+RR++LA  D 
Sbjct: 290 KVRRQRLWGGGPKKTKMEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQGD- 348

Query: 497 DMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELKE 534
           + +DDRDYYGNKRLELAG LLSL+FED+FK+FNSE+K+
Sbjct: 349 NKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKK 386



 Score = 61.2 bits (147), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 44/66 (66%)

Query: 110 PEIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDI 169
           P + +KW ++  +LK    +K  I    +F  ++IKK+M+AN  + SD DP++YLKYL+I
Sbjct: 21  PTVEEKWDILGHYLKGNDXLKACIFPNVFFPPLQIKKIMKANEKVTSDADPMWYLKYLNI 80

Query: 170 HVGIAD 175
           +VG+ D
Sbjct: 81  YVGLPD 86


>gi|193787264|dbj|BAG52470.1| unnamed protein product [Homo sapiens]
          Length = 838

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 193/265 (72%), Positives = 231/265 (87%), Gaps = 4/265 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMY L Y Q+PMV++KTI +  
Sbjct: 375  GLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIE 434

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNAT+AVMSYSGYDIEDAL++NKASLDRGFGRCLVY+N+KC LK+Y NQT D+
Sbjct: 435  FEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDK 494

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT----P 1088
            ++GP+L+A TRKP++RH  LD DGI +PGE++  +QVLVNKSMPT++   +  +     P
Sbjct: 495  VMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQP 554

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
            +YK+VP++YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GL
Sbjct: 555  QYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGL 614

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            IV QEDMPF +SGICPDIIMNPHG 
Sbjct: 615  IVPQEDMPFCDSGICPDIIMNPHGF 639



 Score =  320 bits (820), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 174/309 (56%), Positives = 214/309 (69%), Gaps = 26/309 (8%)

Query: 1079 SVSAISMATPEYKEVPVSYKGSVPSYLEKVLVSSNSE-----------DAFLIKMLLRQT 1127
            +V+ +S +  + ++  V  K S+     + LV  N++           D  +  ML   T
Sbjct: 445  TVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLDAAT 504

Query: 1128 RRP----EIGDKFSSRHGQKGVI--GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITE 1181
            R+P    EI D         G+   G  VE + +  N+S   P +   P       +  +
Sbjct: 505  RKPIWRHEILDA-------DGICSPGEKVENKQVLVNKS--MPTVTQIPLEGSNVPQQPQ 555

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
            YK+VP++YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GLI
Sbjct: 556  YKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLI 615

Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
            V QEDMPF +SGICPDIIMNPHG+PSRMTVGKLIELLAGKAG+++G +  GTAFGG+K+ 
Sbjct: 616  VPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSKVK 675

Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
            DV E+L+RHGYNY GKD   SGITGE LEAYIY GPVYYQKLKHMV DK+HAR+RGPR V
Sbjct: 676  DVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAV 735

Query: 1362 LTRQPTGRR 1370
            LTRQPT  R
Sbjct: 736  LTRQPTEGR 744



 Score =  259 bits (661), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 125/209 (59%), Positives = 161/209 (77%), Gaps = 4/209 (1%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVNHM 192
           +D  DY+ N  ++   Q  + ++ D+    + K+      IAD++IPK +AAQFD+V HM
Sbjct: 56  VDDRDYYGNKRLELAGQLLSLLFEDL----FKKFNSEMKKIADQVIPKQRAAQFDVVKHM 111

Query: 193 RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVS 252
           RQD ITN +  AI TGNW+++RFKM+RQGVTQVLSRLSYIS LGMMTRI+SQFEKTRKVS
Sbjct: 112 RQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVS 171

Query: 253 GPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMF 312
           GPRSLQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT+ ++  ++K+  N+G+E + + 
Sbjct: 172 GPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLL 231

Query: 313 NGEELSSPGVYLVFVNGILAGITCHHKEV 341
            GEELS P V+LVF+NG + G+   HK++
Sbjct: 232 CGEELSYPNVFLVFLNGNILGVIRDHKKL 260



 Score =  178 bits (451), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 89/150 (59%), Positives = 105/150 (70%), Gaps = 18/150 (12%)

Query: 677 RPTFLNMHQ---FLGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAP 733
           +P   N H      G++ F+DFL+E  +EYLDVNE ND +IA+ E  I    TTHLEI P
Sbjct: 308 KPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKD-TTHLEIEP 366

Query: 734 FTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDT 793
           FTLLGVCAG              L+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDT
Sbjct: 367 FTLLGVCAG--------------LIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDT 412

Query: 794 LMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
           LMY L Y Q+PMV++KTI +  F KLPAG+
Sbjct: 413 LMYLLAYPQKPMVKTKTIELIEFEKLPAGQ 442



 Score =  112 bits (280), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 70/86 (81%), Gaps = 1/86 (1%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           KKT +++AR+ L+ST + H+PV    F+ K +Y AVM+RR++LA  D + +DDRDYYGNK
Sbjct: 7   KKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQGD-NKVDDRDYYGNK 65

Query: 509 RLELAGSLLSLMFEDVFKRFNSELKE 534
           RLELAG LLSL+FED+FK+FNSE+K+
Sbjct: 66  RLELAGQLLSLLFEDLFKKFNSEMKK 91


>gi|383862931|ref|XP_003706936.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Megachile
            rotundata]
          Length = 1132

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 191/265 (72%), Positives = 232/265 (87%), Gaps = 4/265 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GLVPYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMYNLVY Q PMV+S+TI + N
Sbjct: 669  GLVPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYNLVYPQAPMVKSRTIELIN 728

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNA +AVMSYSGYDIEDALI+NKAS+DRG+GRCL+YRN+KC LK+Y NQT+DR
Sbjct: 729  FDKLPAGQNAIVAVMSYSGYDIEDALILNKASIDRGYGRCLIYRNAKCTLKRYANQTYDR 788

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT----P 1088
            I+GPL++++T+K V++H  +D DGI APGE +  R+V+VNKS P++++  ++        
Sbjct: 789  IMGPLIDSNTKKSVWKHDIIDSDGIAAPGEMVENRKVMVNKSSPSVNIGPVNSGNVQTQT 848

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
            EYK+VPV +KG VP+Y+EKV++SSN+EDAFLIK+LLRQTRRPEIGDKFSSRHGQKGV GL
Sbjct: 849  EYKDVPVVFKGPVPAYVEKVMISSNAEDAFLIKLLLRQTRRPEIGDKFSSRHGQKGVTGL 908

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            IVEQEDMPFN+ GICPD+IMNPHG 
Sbjct: 909  IVEQEDMPFNDYGICPDMIMNPHGF 933



 Score =  340 bits (872), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 163/226 (72%), Positives = 189/226 (83%), Gaps = 2/226 (0%)

Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNS 1206
            G +VE   +  N+S   P + + P         TEYK+VPV +KG VP+Y+EKV++SSN+
Sbjct: 817  GEMVENRKVMVNKSS--PSVNIGPVNSGNVQTQTEYKDVPVVFKGPVPAYVEKVMISSNA 874

Query: 1207 EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYP 1266
            EDAFLIK+LLRQTRRPEIGDKFSSRHGQKGV GLIVEQEDMPFN+ GICPD+IMNPHG+P
Sbjct: 875  EDAFLIKLLLRQTRRPEIGDKFSSRHGQKGVTGLIVEQEDMPFNDYGICPDMIMNPHGFP 934

Query: 1267 SRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITG 1326
            SRMTVGKLIELLAGKAG+++G +  GTAFGG+K+ DV EEL++HGYNY GKD FYSGITG
Sbjct: 935  SRMTVGKLIELLAGKAGVIKGEFHYGTAFGGSKVEDVCEELVKHGYNYLGKDFFYSGITG 994

Query: 1327 EALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
            E L+AYIYSGPVYYQKLKHMVQDK+HARSRGPR VLTRQPT  R K
Sbjct: 995  EPLQAYIYSGPVYYQKLKHMVQDKMHARSRGPRAVLTRQPTEGRAK 1040



 Score =  259 bits (663), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 130/209 (62%), Positives = 162/209 (77%), Gaps = 4/209 (1%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVNHM 192
           +D  DY+ N   K+L  A + +    + LF     ++   IADK IPKIKAAQFDIV HM
Sbjct: 350 VDDRDYYGN---KRLELAGSLLSLMFEDLFKRFNWELK-QIADKNIPKIKAAQFDIVKHM 405

Query: 193 RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVS 252
           RQD ITN L  AI +GNWTI+RFKMER GVTQVLSRLSYIS LGMMTR+NSQFEKTRKVS
Sbjct: 406 RQDQITNGLAFAISSGNWTIKRFKMERHGVTQVLSRLSYISALGMMTRVNSQFEKTRKVS 465

Query: 253 GPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMF 312
           GPRSLQ SQWGMLCPSDTPEGE CGLVKNLALMTHITTE DE+ ++++ +N+G+E++ + 
Sbjct: 466 GPRSLQPSQWGMLCPSDTPEGEGCGLVKNLALMTHITTEIDEEPIIRLAFNLGVENVNIL 525

Query: 313 NGEELSSPGVYLVFVNGILAGITCHHKEV 341
            GEE+++  VY+VF+NG + GI  +++ +
Sbjct: 526 GGEEINNRKVYMVFLNGNILGIVKNYQRL 554



 Score =  186 bits (471), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 94/139 (67%), Positives = 104/139 (74%), Gaps = 15/139 (10%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G + F+DFL +G IEYLDVNE NDS IA +ES I    TTHLEI PFTLLGVCAG     
Sbjct: 616 GVRCFEDFLNDGLIEYLDVNEENDSSIAFNESHINEK-TTHLEIEPFTLLGVCAG----- 669

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    LVPYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMYNLVY Q PMV+
Sbjct: 670 ---------LVPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYNLVYPQAPMVK 720

Query: 808 SKTIRITNFHKLPAGKCQI 826
           S+TI + NF KLPAG+  I
Sbjct: 721 SRTIELINFDKLPAGQNAI 739



 Score =  127 bits (320), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 57/96 (59%), Positives = 77/96 (80%)

Query: 439 KLRQKRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDM 498
           K +QKRF   K +  D+ +D L++  ++H+PV++  FKMKA Y+A+MIR+++ A SD  +
Sbjct: 290 KRKQKRFSVIKSSITDEMKDILATNVLSHVPVVDFNFKMKATYIALMIRKVMKAQSDGKL 349

Query: 499 LDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELKE 534
           +DDRDYYGNKRLELAGSLLSLMFED+FKRFN ELK+
Sbjct: 350 VDDRDYYGNKRLELAGSLLSLMFEDLFKRFNWELKQ 385



 Score =  110 bits (275), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 49/72 (68%), Positives = 59/72 (81%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQ 400
           V  P++EE FN TR TTPHECRLRDL YSAPITVDIEY RG Q ++R++L+IGRMPIML+
Sbjct: 82  VGSPDVEEGFNVTRPTTPHECRLRDLNYSAPITVDIEYIRGHQPIIRNNLLIGRMPIMLR 141

Query: 401 SSKCVLRNKTEY 412
           SS CVL  K+ +
Sbjct: 142 SSNCVLTGKSHF 153



 Score = 99.0 bits (245), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 44/64 (68%), Positives = 54/64 (84%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           I+DKWKLV +FLK KGLVK HIDSF+YFIN EIKK+++AN  + SD DPLFY+KYL++HV
Sbjct: 23  IQDKWKLVPAFLKGKGLVKQHIDSFNYFINTEIKKIVKANEKVLSDADPLFYVKYLNVHV 82

Query: 172 GIAD 175
           G  D
Sbjct: 83  GSPD 86


>gi|426373973|ref|XP_004053858.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Gorilla
            gorilla gorilla]
          Length = 1031

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 193/265 (72%), Positives = 231/265 (87%), Gaps = 4/265 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMY L Y Q+PMV++KTI +  
Sbjct: 568  GLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIE 627

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNAT+AVMSYSGYDIEDAL++NKASLDRGFGRCLVY+N+KC LK+Y NQT D+
Sbjct: 628  FEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDK 687

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT----P 1088
            ++GP+L+A TRKP++RH  LD DGI +PGE++  +QVLVNKSMPT++   +  +     P
Sbjct: 688  VMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQP 747

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
            +YK+VP++YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GL
Sbjct: 748  QYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGL 807

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            IV QEDMPF +SGICPDIIMNPHG 
Sbjct: 808  IVPQEDMPFCDSGICPDIIMNPHGF 832



 Score =  319 bits (818), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 174/308 (56%), Positives = 214/308 (69%), Gaps = 24/308 (7%)

Query: 1079 SVSAISMATPEYKEVPVSYKGSVPSYLEKVLVSSNSE-----------DAFLIKMLLRQT 1127
            +V+ +S +  + ++  V  K S+     + LV  N++           D  +  ML   T
Sbjct: 638  TVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLDAAT 697

Query: 1128 RRP----EIGDKFS-SRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITEY 1182
            R+P    EI D       G+K      VE + +  N+S   P +   P       +  +Y
Sbjct: 698  RKPIWRHEILDADGICSPGEK------VENKQVLVNKS--MPTVTQIPLEGSNVPQQPQY 749

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            K+VP++YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GLIV
Sbjct: 750  KDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIV 809

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF +SGICPDIIMNPHG+PSRMTVGKLIELLAGKAG+++G +  GTAFGG+K+ D
Sbjct: 810  PQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSKVKD 869

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
            V E+L+RHGYNY GKD   SGITGE LEAYIY GPVYYQKLKHMV DK+HAR+RGPR VL
Sbjct: 870  VCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVL 929

Query: 1363 TRQPTGRR 1370
            TRQPT  R
Sbjct: 930  TRQPTEGR 937



 Score =  235 bits (600), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 169/429 (39%), Positives = 217/429 (50%), Gaps = 77/429 (17%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           KKT +++AR+ L+ST + H+PV    F+ K +Y AVM+RR++LA  D + +DDRDYYGNK
Sbjct: 230 KKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQGD-NKVDDRDYYGNK 288

Query: 509 RLELAGSLLS-LMFEDVFKRFNSELKETNLS-------------GVVNLVSGWWFELKYG 554
           RLELAG L++ ++F+D     NS +   +L              GV  ++S   +    G
Sbjct: 289 RLELAGQLINDILFQDCDWVRNSLMSFISLQGNWSLKRFKMDRQGVTQVLSRLSYISALG 348

Query: 555 NKIYIRSPSRKLLAAGFSGPHSGRVRLMPEGPTILLNSCLRSG---GKAQHEALYNAVQR 611
               I S   K      SGP S    L P    +L  S    G   G  ++ AL   +  
Sbjct: 349 MMTRISSQFEK--TRKVSGPRS----LQPSQWGMLCPSDTPEGEACGLVKNLALMTHITT 402

Query: 612 HATKCCTLN-----------------------FLFFLGGGGILPSIQRQTTCLLTLILFS 648
                  +                        FL FL G  IL  I+     + T  L  
Sbjct: 403 DMEDGPIVKLASNLGVEDVNLLCGEELSYPNVFLVFLNGN-ILGVIRDHKKLVNTFRLMR 461

Query: 649 LNGDGKRGARNSQQYCD-CPDGYSSG---CQP-------RPTFLNMHQ---FLGFKRFDD 694
             G        S    D C    S G   C+P       +P   N H      G++ F+D
Sbjct: 462 RAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQGYRNFED 521

Query: 695 FLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHS 754
           FL+E  +EYLDVNE ND +IA+ E  I    TTHLEI PFTLLGVCAG            
Sbjct: 522 FLHESLVEYLDVNEENDCNIALYEHTINKD-TTHLEIEPFTLLGVCAG------------ 568

Query: 755 PGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRIT 814
             L+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMY L Y Q+PMV++KTI + 
Sbjct: 569 --LIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELI 626

Query: 815 NFHKLPAGK 823
            F KLPAG+
Sbjct: 627 EFEKLPAGQ 635



 Score =  209 bits (531), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 99/148 (66%), Positives = 123/148 (83%), Gaps = 1/148 (0%)

Query: 195 DTITNALTAAIQ-TGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVSG 253
           D + N+L + I   GNW+++RFKM+RQGVTQVLSRLSYIS LGMMTRI+SQFEKTRKVSG
Sbjct: 306 DWVRNSLMSFISLQGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSG 365

Query: 254 PRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMFN 313
           PRSLQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT+ ++  ++K+  N+G+E + +  
Sbjct: 366 PRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLLC 425

Query: 314 GEELSSPGVYLVFVNGILAGITCHHKEV 341
           GEELS P V+LVF+NG + G+   HK++
Sbjct: 426 GEELSYPNVFLVFLNGNILGVIRDHKKL 453



 Score =  113 bits (283), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 51/67 (76%), Positives = 59/67 (88%)

Query: 344 PEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSK 403
           P++EESFN TR  +PHECRLRD+TYSAPITVDIEYTRGSQR++R+ L IGRMPIML+SS 
Sbjct: 54  PDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSN 113

Query: 404 CVLRNKT 410
           CVL  KT
Sbjct: 114 CVLTGKT 120


>gi|432094370|gb|ELK25947.1| DNA-directed RNA polymerase III subunit RPC2 [Myotis davidii]
          Length = 1122

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 192/265 (72%), Positives = 232/265 (87%), Gaps = 4/265 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMY L Y Q+PMV++KTI +  
Sbjct: 659  GLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIE 718

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNAT+AVMSYSGYDIEDAL++NKASLDRGFGRCLVY+N+KC LK+Y NQT D+
Sbjct: 719  FEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDK 778

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT----P 1088
            ++GP+L+A TRKP++RH  LD +GI +PGE++  +QVLVNKSMPT++   +  ++    P
Sbjct: 779  VMGPILDAATRKPIWRHEILDANGICSPGEKVENKQVLVNKSMPTVTQIPLEGSSVPQQP 838

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
            +YK+VP++YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GL
Sbjct: 839  QYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGL 898

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            IV QEDMPF +SGICPDIIMNPHG 
Sbjct: 899  IVPQEDMPFCDSGICPDIIMNPHGF 923



 Score =  320 bits (819), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 149/190 (78%), Positives = 170/190 (89%)

Query: 1181 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1240
            +YK+VP++YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GL
Sbjct: 839  QYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGL 898

Query: 1241 IVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKL 1300
            IV QEDMPF +SGICPDIIMNPHG+PSRMTVGKLIELLAGKAG+++G +  GTAFGG+K+
Sbjct: 899  IVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSKV 958

Query: 1301 VDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRV 1360
             DV E+L+RHGYNY GKD   SGITGE LEAYIY GPVYYQKLKHMV DK+HAR+RGPR 
Sbjct: 959  KDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRA 1018

Query: 1361 VLTRQPTGRR 1370
            VLTRQPT  R
Sbjct: 1019 VLTRQPTEGR 1028



 Score =  258 bits (659), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 124/209 (59%), Positives = 161/209 (77%), Gaps = 4/209 (1%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVNHM 192
           +D  DY+ N  ++   Q  + ++ D+    + K+      IAD++IPK +AAQFD+V HM
Sbjct: 340 VDDRDYYGNKRLELAGQLLSLLFEDL----FKKFNSEMKKIADQVIPKQRAAQFDVVKHM 395

Query: 193 RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVS 252
           RQD ITN +  AI TGNW+++RFKM+RQGVTQVLSRLSYIS LGMMTRI+SQFEKTRKVS
Sbjct: 396 RQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVS 455

Query: 253 GPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMF 312
           GPRSLQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT+ ++  ++++  N+G+E + + 
Sbjct: 456 GPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVRLASNLGVEDVNLL 515

Query: 313 NGEELSSPGVYLVFVNGILAGITCHHKEV 341
            GEELS P V+LVF+NG + G+   HK++
Sbjct: 516 CGEELSYPNVFLVFLNGNILGVIRDHKKL 544



 Score =  179 bits (453), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 107/217 (49%), Positives = 126/217 (58%), Gaps = 30/217 (13%)

Query: 621 FLFFLGGGGILPSIQRQTTCLLTLILFSLNGDGKRGARNSQQYCD-CPDGYSSG---CQP 676
           FL FL G  IL  I+     + T  L    G        S    D C    S G   C+P
Sbjct: 526 FLVFLNGN-ILGVIRDHKKLVNTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRP 584

Query: 677 -------RPTFLNMHQ---FLGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVT 726
                  +P   N H      G++ F+DFL+E  +EYLDVNE ND +IA+ E  I    T
Sbjct: 585 YIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKD-T 643

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           THLEI PFTLLGVCAG              L+PYPHHNQ+PRNTYQCAMGKQAMG IGYN
Sbjct: 644 THLEIEPFTLLGVCAG--------------LIPYPHHNQSPRNTYQCAMGKQAMGTIGYN 689

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
           Q+NRIDTLMY L Y Q+PMV++KTI +  F KLPAG+
Sbjct: 690 QRNRIDTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQ 726



 Score =  117 bits (292), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 75/159 (47%), Positives = 95/159 (59%), Gaps = 30/159 (18%)

Query: 259 GSQWGMLCP----SDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMFNG 314
             ++G L P    +  P  E  GLVK      HI + N          N+ I+ I   N 
Sbjct: 5   AEEFGNLTPEQLAAPIPTVEVKGLVKQ-----HIDSFN-------YFINVEIKKIMKAN- 51

Query: 315 EELSS---PGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHECRLRDLTYSAP 371
           E+++S   P  YL ++N I  G+         P++EESFN TR  +PHECRLRD+TYSAP
Sbjct: 52  EKVTSDADPMWYLKYLN-IYVGL---------PDVEESFNVTRPVSPHECRLRDMTYSAP 101

Query: 372 ITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
           ITVDIEYTRGSQR++R+ L IGRMPIML+SS CVL  KT
Sbjct: 102 ITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKT 140



 Score =  112 bits (281), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 70/86 (81%), Gaps = 1/86 (1%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           KKT +++AR+ L+ST + H+PV    F+ K +Y AVM+RR++LA  D + +DDRDYYGNK
Sbjct: 291 KKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQGD-NKVDDRDYYGNK 349

Query: 509 RLELAGSLLSLMFEDVFKRFNSELKE 534
           RLELAG LLSL+FED+FK+FNSE+K+
Sbjct: 350 RLELAGQLLSLLFEDLFKKFNSEMKK 375



 Score = 80.9 bits (198), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 35/50 (70%), Positives = 44/50 (88%)

Query: 126 KGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIAD 175
           KGLVK HIDSF+YFINVEIKK+M+AN  + SD DP++YLKYL+I+VG+ D
Sbjct: 26  KGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMWYLKYLNIYVGLPD 75


>gi|355712756|gb|AES04455.1| polymerase III polypeptide B [Mustela putorius furo]
          Length = 736

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 193/265 (72%), Positives = 231/265 (87%), Gaps = 4/265 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMY L Y Q+PMV++KTI +  
Sbjct: 274  GLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIE 333

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNAT+AVMSYSGYDIEDAL++NKASLDRGFGRCLVY+N+KC LK+Y NQT D+
Sbjct: 334  FEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDK 393

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT----P 1088
            ++GP+L+A TRKP++RH  LD DGI +PGE++  +QVLVNKSMPT++   +  +     P
Sbjct: 394  VMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQP 453

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
            +YK+VP++YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GL
Sbjct: 454  QYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGL 513

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            IV QEDMPF +SGICPDIIMNPHG 
Sbjct: 514  IVPQEDMPFCDSGICPDIIMNPHGF 538



 Score =  319 bits (818), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 174/309 (56%), Positives = 214/309 (69%), Gaps = 26/309 (8%)

Query: 1079 SVSAISMATPEYKEVPVSYKGSVPSYLEKVLVSSNSE-----------DAFLIKMLLRQT 1127
            +V+ +S +  + ++  V  K S+     + LV  N++           D  +  ML   T
Sbjct: 344  TVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLDAAT 403

Query: 1128 RRP----EIGDKFSSRHGQKGVI--GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITE 1181
            R+P    EI D         G+   G  VE + +  N+S   P +   P       +  +
Sbjct: 404  RKPIWRHEILDA-------DGICSPGEKVENKQVLVNKS--MPTVTQIPLEGSNVPQQPQ 454

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
            YK+VP++YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GLI
Sbjct: 455  YKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLI 514

Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
            V QEDMPF +SGICPDIIMNPHG+PSRMTVGKLIELLAGKAG+++G +  GTAFGG+K+ 
Sbjct: 515  VPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSKVK 574

Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
            DV E+L+RHGYNY GKD   SGITGE LEAYIY GPVYYQKLKHMV DK+HAR+RGPR V
Sbjct: 575  DVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAV 634

Query: 1362 LTRQPTGRR 1370
            LTRQPT  R
Sbjct: 635  LTRQPTEGR 643



 Score =  231 bits (590), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 109/159 (68%), Positives = 133/159 (83%), Gaps = 2/159 (1%)

Query: 185 QFDIVNHMRQDTITNA--LTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRIN 242
           QFD+V HMRQD ITN   +  AI TGNW+++RFKM+RQGVTQVLSRLSYIS LGMMTRI+
Sbjct: 1   QFDVVKHMRQDQITNGNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRIS 60

Query: 243 SQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMY 302
           SQFEKTRKVSGPRSLQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT+ ++  ++K+  
Sbjct: 61  SQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLAG 120

Query: 303 NIGIEHIAMFNGEELSSPGVYLVFVNGILAGITCHHKEV 341
           N+G+E + +  GEELS P V+LVF+NG + G+   H+++
Sbjct: 121 NLGVEDVNLLCGEELSYPNVFLVFLNGNILGVIRDHRKL 159



 Score =  177 bits (449), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 89/150 (59%), Positives = 105/150 (70%), Gaps = 18/150 (12%)

Query: 677 RPTFLNMHQ---FLGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAP 733
           +P   N H      G++ F+DFL+E  +EYLDVNE ND +IA+ E  I    TTHLEI P
Sbjct: 207 KPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKD-TTHLEIEP 265

Query: 734 FTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDT 793
           FTLLGVCAG              L+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDT
Sbjct: 266 FTLLGVCAG--------------LIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDT 311

Query: 794 LMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
           LMY L Y Q+PMV++KTI +  F KLPAG+
Sbjct: 312 LMYLLAYPQKPMVKTKTIELIEFEKLPAGQ 341


>gi|189230055|ref|NP_001121521.1| polymerase (RNA) III (DNA directed) polypeptide B [Xenopus (Silurana)
            tropicalis]
 gi|183986364|gb|AAI66377.1| LOC100158643 protein [Xenopus (Silurana) tropicalis]
          Length = 1134

 Score =  424 bits (1089), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 191/264 (72%), Positives = 231/264 (87%), Gaps = 4/264 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMY L Y QRPMV++KTI +  
Sbjct: 671  GLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQRPMVKTKTIELIE 730

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNAT+AVMSYSGYDIEDAL++NKASLDRGFGRCLVY+N+KC LK+Y NQT D+
Sbjct: 731  FEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYSNQTFDK 790

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT----P 1088
            ++GP+L+A+TRK ++RH  LD DGI +PGE++  +QVLVNK MPT++ + +  ++    P
Sbjct: 791  VMGPMLDANTRKQIWRHEILDADGICSPGEKVENKQVLVNKYMPTVTQTPLEGSSVPQQP 850

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
            +YK+VP++YKG   SY+EKV++SSN+EDAFLIK+LLRQTRRPEIGDKFSSRHGQKGV GL
Sbjct: 851  QYKDVPITYKGPTDSYIEKVMISSNAEDAFLIKILLRQTRRPEIGDKFSSRHGQKGVCGL 910

Query: 1149 IVEQEDMPFNESGICPDIIMNPHG 1172
            IV QEDMPF E+GICPDIIMNPHG
Sbjct: 911  IVPQEDMPFCETGICPDIIMNPHG 934



 Score =  317 bits (812), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 149/190 (78%), Positives = 169/190 (88%)

Query: 1181 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1240
            +YK+VP++YKG   SY+EKV++SSN+EDAFLIK+LLRQTRRPEIGDKFSSRHGQKGV GL
Sbjct: 851  QYKDVPITYKGPTDSYIEKVMISSNAEDAFLIKILLRQTRRPEIGDKFSSRHGQKGVCGL 910

Query: 1241 IVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKL 1300
            IV QEDMPF E+GICPDIIMNPHGYPSRMTVGKLIELLAGKAG+++G +  GTAFGG+K+
Sbjct: 911  IVPQEDMPFCETGICPDIIMNPHGYPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSKV 970

Query: 1301 VDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRV 1360
             DV E+LIR+GYNY GKD   SGITGE LEAYIY GPVYYQKLKHMV DK+HAR+RGPR 
Sbjct: 971  KDVCEDLIRYGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRA 1030

Query: 1361 VLTRQPTGRR 1370
            VLTRQPT  R
Sbjct: 1031 VLTRQPTEGR 1040



 Score =  253 bits (645), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 121/209 (57%), Positives = 160/209 (76%), Gaps = 4/209 (1%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVNHM 192
           +D  DY+ N  ++   Q  + ++ D+    + K+      IAD++IPK +AAQFD+V HM
Sbjct: 352 VDDRDYYGNKRLELAGQLLSLLFEDL----FKKFNSEMKKIADQVIPKQRAAQFDVVKHM 407

Query: 193 RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVS 252
           RQD ITN +  AI +GNW+++RFKM+RQGVTQVLSRLSYI+ LGMMTRI+SQFEKTRKVS
Sbjct: 408 RQDQITNGMVNAISSGNWSLKRFKMDRQGVTQVLSRLSYIAALGMMTRISSQFEKTRKVS 467

Query: 253 GPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMF 312
           GPRSLQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT+ ++  ++K+  N+G+E + + 
Sbjct: 468 GPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKLAANLGVEDVNLL 527

Query: 313 NGEELSSPGVYLVFVNGILAGITCHHKEV 341
            GEELS   V+LVF+NG + G+   H+++
Sbjct: 528 CGEELSYANVFLVFLNGNILGVIRDHQKL 556



 Score =  178 bits (452), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 86/136 (63%), Positives = 101/136 (74%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G++ F+DFL+E  +EYLDVNE ND ++A+ E  I    TTHLEI PFTLLGVCAG     
Sbjct: 618 GYRSFEDFLHESLVEYLDVNEENDCNVALYEHTITKH-TTHLEIEPFTLLGVCAG----- 671

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMY L Y QRPMV+
Sbjct: 672 ---------LIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQRPMVK 722

Query: 808 SKTIRITNFHKLPAGK 823
           +KTI +  F KLPAG+
Sbjct: 723 TKTIELIEFEKLPAGQ 738



 Score =  114 bits (286), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 57/93 (61%), Positives = 69/93 (74%), Gaps = 10/93 (10%)

Query: 318 SSPGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIE 377
           + P  YL ++N I  G+         P++EESFN TR  +PHECRLRD+TYSAPITVDIE
Sbjct: 69  ADPMWYLKYLN-IYVGL---------PDVEESFNVTRPVSPHECRLRDMTYSAPITVDIE 118

Query: 378 YTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
           YTRGSQR++R+ L IGRMPIML+SS CVL  KT
Sbjct: 119 YTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKT 151



 Score =  112 bits (280), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 50/86 (58%), Positives = 70/86 (81%), Gaps = 1/86 (1%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           KK+ +D+AR+ L+ST + H+PV    F+ K +Y+AVM+RR++LA    + +DDRDYYGNK
Sbjct: 303 KKSKIDEARELLASTILTHVPVKEFHFRTKCIYIAVMVRRVILA-QGANKVDDRDYYGNK 361

Query: 509 RLELAGSLLSLMFEDVFKRFNSELKE 534
           RLELAG LLSL+FED+FK+FNSE+K+
Sbjct: 362 RLELAGQLLSLLFEDLFKKFNSEMKK 387



 Score = 94.7 bits (234), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 41/64 (64%), Positives = 55/64 (85%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           +++KWKL+ +FLK KGLVK HIDSF+YFIN EIKK+M+AN  + SD DP++YLKYL+I+V
Sbjct: 23  VQEKWKLLPAFLKVKGLVKQHIDSFNYFINDEIKKIMKANEKVTSDADPMWYLKYLNIYV 82

Query: 172 GIAD 175
           G+ D
Sbjct: 83  GLPD 86


>gi|124805562|ref|XP_001350475.1| DNA-directed RNA polymerase III subunit, putative [Plasmodium
            falciparum 3D7]
 gi|23496598|gb|AAN36155.1|AE014845_10 DNA-directed RNA polymerase III subunit, putative [Plasmodium
            falciparum 3D7]
          Length = 1450

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 222/470 (47%), Positives = 298/470 (63%), Gaps = 35/470 (7%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYP+HNQ+PRNTYQCAMGKQA+G IGYNQ  R DTL+Y LVY Q+P+V+SKTI   N
Sbjct: 916  GLIPYPNHNQSPRNTYQCAMGKQAIGAIGYNQFVRCDTLLYLLVYPQKPLVKSKTIEFIN 975

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNA +AVMS+ GYDIEDA++MNK+S+DRGFGRC+  R     LK+Y N ++D 
Sbjct: 976  FEKLPAGQNAIVAVMSFCGYDIEDAIVMNKSSIDRGFGRCMSLRKHSVELKKYFNGSNDI 1035

Query: 1033 ILGPLLEADTRKPVYRHRAL--------DQDGIVAPG--EQICERQVLVNKSMPTISVSA 1082
            +L   L  +  +   + R +        ++DGI        I  +    + +     +  
Sbjct: 1036 VLPSPLVINKLQQQRKEREIKSEIKNEKEKDGIKQEHHHNNIDSKNNKSSYNNNVSKIDN 1095

Query: 1083 ISMATPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQ 1142
            +   +  +K +    K  +     K +   +S D                 D  +S    
Sbjct: 1096 VKKDSYGHKNISNESKDDIKKMANKDIRKYHSLDM----------------DGVAS---- 1135

Query: 1143 KGVIGLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLV 1202
               IG ++++  +  N+    P  I +     G   I ++K   + YK   PSY++K++ 
Sbjct: 1136 ---IGYLIKEGQLYVNK--FSPKNIKDHVKDIGKVDINDFKINEIKYKSVYPSYIDKIIF 1190

Query: 1203 SSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNP 1262
            + NSE   L K+++RQTR PE+GDKFSSRHGQKGV+GL+V QEDMPF ESGICPD+IMNP
Sbjct: 1191 TENSEGLKLYKIIMRQTRLPELGDKFSSRHGQKGVVGLLVNQEDMPFTESGICPDLIMNP 1250

Query: 1263 HGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYS 1322
            HG+PSRMTVGKL+EL+A KA +M+G YK G+ F GT   ++ E L R+G+N   K++ YS
Sbjct: 1251 HGFPSRMTVGKLLELVASKAAVMDGEYKYGSIFSGTPFEEIAEILFRYGFNCSSKELLYS 1310

Query: 1323 GITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
            G+TGE LE YI+ GP+YYQKLKHMVQDKIHAR+RGPR +LTRQPT  R K
Sbjct: 1311 GLTGEPLETYIFMGPIYYQKLKHMVQDKIHARARGPRQLLTRQPTEGRSK 1360



 Score =  200 bits (508), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 89/149 (59%), Positives = 118/149 (79%), Gaps = 1/149 (0%)

Query: 187 DIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFE 246
           D+  ++ +D IT  +  AI TGNW I+RFKME+ GV+QVLSRLS+I+ +GMMTR+NSQFE
Sbjct: 646 DVFRNLPKDIITRGMQTAISTGNWNIKRFKMEKSGVSQVLSRLSFIACIGMMTRLNSQFE 705

Query: 247 KTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTEND-EKNMLKIMYNIG 305
           K RKVSGPR+LQ SQWG+LCP DTPEGE+CGLVKNLALMTH+T +N+  +N+++I+Y +G
Sbjct: 706 KGRKVSGPRALQPSQWGVLCPCDTPEGESCGLVKNLALMTHVTNDNENNENLIEILYTLG 765

Query: 306 IEHIAMFNGEELSSPGVYLVFVNGILAGI 334
           +E      GEE+   GV+ V +NGIL G+
Sbjct: 766 VEDSDSLTGEEIYKEGVFFVILNGILLGV 794



 Score =  148 bits (373), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 78/139 (56%), Positives = 93/139 (66%), Gaps = 15/139 (10%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G   F D L    IE++DVNE N+  IA++ES I    TTHLEI P T+LGV AG     
Sbjct: 863 GTINFFDLLKSSVIEWIDVNEQNNLLIALNESDISLS-TTHLEIDPLTILGVVAG----- 916

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYP+HNQ+PRNTYQCAMGKQA+G IGYNQ  R DTL+Y LVY Q+P+V+
Sbjct: 917 ---------LIPYPNHNQSPRNTYQCAMGKQAIGAIGYNQFVRCDTLLYLLVYPQKPLVK 967

Query: 808 SKTIRITNFHKLPAGKCQI 826
           SKTI   NF KLPAG+  I
Sbjct: 968 SKTIEFINFEKLPAGQNAI 986



 Score = 79.3 bits (194), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/96 (41%), Positives = 68/96 (70%), Gaps = 2/96 (2%)

Query: 440 LRQKRFQTYKKTPVDDARDFLSSTCIAHIPVIN-MRFKMKAMYLAVMIRRMVLALSDPDM 498
           +++K+ +  +K  +++  DFLS   ++HI   +   F+ KA  + +MIRR++ + ++ + 
Sbjct: 521 MKEKQVKN-EKDIIEEGLDFLSRVLLSHIQQKSKYDFRNKARCICLMIRRVLDSANNKNE 579

Query: 499 LDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELKE 534
           +DD+DYYGNKRLELAG L+SL+FED++KRF   LK+
Sbjct: 580 IDDKDYYGNKRLELAGQLISLLFEDLYKRFYFTLKK 615



 Score = 77.8 bits (190), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 36/71 (50%), Positives = 51/71 (71%), Gaps = 1/71 (1%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQ 400
           V  P +EE+   T+  TP  CR RDLTYSAPI VD+EY +G+  + ++++ IGR+P+ML+
Sbjct: 300 VGTPSVEENMIETK-LTPQICRQRDLTYSAPIYVDVEYVKGNSIITKNNVEIGRLPVMLR 358

Query: 401 SSKCVLRNKTE 411
           S  CVL NK+E
Sbjct: 359 SDICVLNNKSE 369



 Score = 71.6 bits (174), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/142 (32%), Positives = 75/142 (52%), Gaps = 13/142 (9%)

Query: 53  DFGDSKVVSLRELLSHVTYQKRLYRLTVQPNWLGTVKAVHGTYLTMVTDETSKLKDSP-- 110
           +F +  + +L+E + +   + +  +L    N L   +   G  +          ++S   
Sbjct: 177 NFNEDNINNLKEFIHNENKKPKTGKLYNNMNILNDEENFSGLVIKNKEHNKKIYENSKCV 236

Query: 111 -EIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANAN--IYSDVDPLFYLKYL 167
             + +KWKL+ ++LK KGLVK HI+S++YFI  EIK +M A  N  I SD+D  FY+++L
Sbjct: 237 NTLNEKWKLLPAYLKVKGLVKQHIESYNYFIKREIKTIMNATTNKIIKSDIDEHFYVEFL 296

Query: 168 DIHVG--------IADKIIPKI 181
           DI VG        I  K+ P+I
Sbjct: 297 DITVGTPSVEENMIETKLTPQI 318


>gi|56541770|emb|CAI30267.1| hypothetical protein [Pongo abelii]
          Length = 1116

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 193/266 (72%), Positives = 231/266 (86%), Gaps = 5/266 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMY L Y Q+PMV++KTI +  
Sbjct: 652  GLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIE 711

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNAT+AVMSYSGYDIEDAL++NKASLDRGFGRCLVY+N+KC LK+Y NQT D+
Sbjct: 712  FEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDK 771

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT----P 1088
            ++GP+L+A TRKP++RH  LD DGI +PGE++  +QVLVNKSMPT++   +  +     P
Sbjct: 772  VMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQP 831

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQ-KGVIG 1147
            +YK+VP++YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQ KGV G
Sbjct: 832  QYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKKGVCG 891

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            LIV QEDMPF +SGICPDIIMNPHG 
Sbjct: 892  LIVPQEDMPFCDSGICPDIIMNPHGF 917



 Score =  315 bits (808), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 174/310 (56%), Positives = 214/310 (69%), Gaps = 27/310 (8%)

Query: 1079 SVSAISMATPEYKEVPVSYKGSVPSYLEKVLVSSNSE-----------DAFLIKMLLRQT 1127
            +V+ +S +  + ++  V  K S+     + LV  N++           D  +  ML   T
Sbjct: 722  TVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLDAAT 781

Query: 1128 RRP----EIGDKFSSRHGQKGVI--GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITE 1181
            R+P    EI D         G+   G  VE + +  N+S   P +   P       +  +
Sbjct: 782  RKPIWRHEILD-------ADGICSPGEKVENKQVLVNKS--MPTVTQIPLEGSNVPQQPQ 832

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK-GVIGL 1240
            YK+VP++YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQK GV GL
Sbjct: 833  YKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKKGVCGL 892

Query: 1241 IVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKL 1300
            IV QEDMPF +SGICPDIIMNPHG+PSRMTVGKLIELLAGKAG+++G +  GTAFGG+K+
Sbjct: 893  IVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSKV 952

Query: 1301 VDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRV 1360
             DV E+L+RHGYNY GKD   SGITGE LEAYIY GPVYYQKLKHMV DK+HAR+RGPR 
Sbjct: 953  KDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRA 1012

Query: 1361 VLTRQPTGRR 1370
            VLTRQPT  R
Sbjct: 1013 VLTRQPTEGR 1022



 Score =  179 bits (454), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 107/217 (49%), Positives = 126/217 (58%), Gaps = 30/217 (13%)

Query: 621 FLFFLGGGGILPSIQRQTTCLLTLILFSLNGDGKRGARNSQQYCD-CPDGYSSG---CQP 676
           FL FL G  IL  I+     + T  L    G        S    D C    S G   C+P
Sbjct: 519 FLVFLNGN-ILGVIRDHKKLVNTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRP 577

Query: 677 -------RPTFLNMHQ---FLGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVT 726
                  +P   N H      G++ F+DFL+E  +EYLDVNE ND +IA+ E  I    T
Sbjct: 578 YIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKD-T 636

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           THLEI PFTLLGVCAG              L+PYPHHNQ+PRNTYQCAMGKQAMG IGYN
Sbjct: 637 THLEIEPFTLLGVCAG--------------LIPYPHHNQSPRNTYQCAMGKQAMGTIGYN 682

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
           Q+NRIDTLMY L Y Q+PMV++KTI +  F KLPAG+
Sbjct: 683 QRNRIDTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQ 719



 Score =  177 bits (450), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 98/209 (46%), Positives = 134/209 (64%), Gaps = 22/209 (10%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVNHM 192
           +D  DY+ N  ++   Q  + ++ D+    + K+      IAD++IPK +AAQFD+VN  
Sbjct: 351 VDDRDYYGNKRLELAGQLLSLLFGDL----FKKFNSEMKKIADQVIPKQRAAQFDVVNTC 406

Query: 193 RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVS 252
            +     A   AI TGNW+++RFKM+RQ V QVL RL YIS LGMMTRI+SQFEKTRKVS
Sbjct: 407 AKTRSPMAWVNAISTGNWSLKRFKMDRQ-VNQVLYRLLYISALGMMTRISSQFEKTRKVS 465

Query: 253 GPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMF 312
                             PEGEACGLVKNLALMTHITT+ ++  ++K+  N+G+E + + 
Sbjct: 466 -----------------VPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLL 508

Query: 313 NGEELSSPGVYLVFVNGILAGITCHHKEV 341
            GEELS P V+LVF+NG + G+   HK++
Sbjct: 509 CGEELSYPNVFLVFLNGNILGVIRDHKKL 537



 Score =  110 bits (275), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 62/111 (55%), Positives = 78/111 (70%), Gaps = 14/111 (12%)

Query: 303 NIGIEHIAMFNGEELSS---PGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPH 359
           N+ I+ I   N E+++S   P  YL ++N I  G+         P++EESFN TR  +PH
Sbjct: 52  NVEIKKIMKAN-EKVTSDADPMWYLKYLN-IYVGL---------PDVEESFNVTRPVSPH 100

Query: 360 ECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
           ECRLRD+TYSAPITVDIEYTRGSQR++R+ L IGRMPIML+SS  VL  KT
Sbjct: 101 ECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNRVLTGKT 151



 Score =  110 bits (274), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 50/86 (58%), Positives = 69/86 (80%), Gaps = 1/86 (1%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           KKT +++AR+ L+ST + H+PV    F+ K +Y AVM+RR++LA  D + +DDRDYYGNK
Sbjct: 302 KKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQGD-NKVDDRDYYGNK 360

Query: 509 RLELAGSLLSLMFEDVFKRFNSELKE 534
           RLELAG LLSL+F D+FK+FNSE+K+
Sbjct: 361 RLELAGQLLSLLFGDLFKKFNSEMKK 386



 Score = 98.6 bits (244), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 42/66 (63%), Positives = 56/66 (84%)

Query: 110 PEIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDI 169
           P + +KW+L+ +FLK KGLVK HIDSF+YFINVEIKK+M+AN  + SD DP++YLKYL+I
Sbjct: 21  PTVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMWYLKYLNI 80

Query: 170 HVGIAD 175
           +VG+ D
Sbjct: 81  YVGLPD 86


>gi|91082339|ref|XP_966549.1| PREDICTED: similar to RNA polymerase III 128kD subunit CG8344-PA
            [Tribolium castaneum]
 gi|270007487|gb|EFA03935.1| hypothetical protein TcasGA2_TC014075 [Tribolium castaneum]
          Length = 1122

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 194/261 (74%), Positives = 227/261 (86%), Gaps = 1/261 (0%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GLVPYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NR+DTL+Y+LVY Q PMV++K+I +TN
Sbjct: 662  GLVPYPHHNQSPRNTYQCAMGKQAMGTIGYNQKNRMDTLLYSLVYPQAPMVKTKSIELTN 721

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNATIAVMSYSGYDIEDALI+NKAS+DRGFGRCLVY+NSKCV+K+Y NQT DR
Sbjct: 722  FDKLPAGQNATIAVMSYSGYDIEDALIINKASIDRGFGRCLVYKNSKCVMKRYANQTFDR 781

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATP-EYK 1091
            I GPL++  T  P+++H  LD DGIVAPGE +  +QVLVNKS+PT+S    S  T  EYK
Sbjct: 782  IQGPLIDTTTNAPMWKHAVLDMDGIVAPGESVDNKQVLVNKSVPTVSAVPGSQTTSVEYK 841

Query: 1092 EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVE 1151
            + P+ Y+ + PSY+EKVLVS+N ED  +IK+LLRQTRRPEIGDKFSSRHGQKGV+GL+VE
Sbjct: 842  DTPICYRNNEPSYIEKVLVSTNEEDTTIIKILLRQTRRPEIGDKFSSRHGQKGVVGLVVE 901

Query: 1152 QEDMPFNESGICPDIIMNPHG 1172
            QEDMPFNE GICPDIIMNPHG
Sbjct: 902  QEDMPFNEYGICPDIIMNPHG 922



 Score =  332 bits (851), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 154/190 (81%), Positives = 170/190 (89%)

Query: 1181 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1240
            EYK+ P+ Y+ + PSY+EKVLVS+N ED  +IK+LLRQTRRPEIGDKFSSRHGQKGV+GL
Sbjct: 839  EYKDTPICYRNNEPSYIEKVLVSTNEEDTTIIKILLRQTRRPEIGDKFSSRHGQKGVVGL 898

Query: 1241 IVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKL 1300
            +VEQEDMPFNE GICPDIIMNPHGYPSRMTVGKLIELLAGKAGL+EG +  GTAFGG+K+
Sbjct: 899  VVEQEDMPFNEYGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLVEGKFHYGTAFGGSKV 958

Query: 1301 VDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRV 1360
             DV EEL +HG+NYQGKD FYSGITGE LEAYIYSGPVYYQKLKHMVQDKIHAR RGPR 
Sbjct: 959  NDVCEELAKHGFNYQGKDFFYSGITGEPLEAYIYSGPVYYQKLKHMVQDKIHARGRGPRA 1018

Query: 1361 VLTRQPTGRR 1370
            VLTRQPT  R
Sbjct: 1019 VLTRQPTEGR 1028



 Score =  241 bits (615), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 122/212 (57%), Positives = 152/212 (71%), Gaps = 4/212 (1%)

Query: 130 KPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIV 189
           K  +D  DY+ N  ++      + ++ DV   F  +       IA+K IPKI+A QFD+V
Sbjct: 340 KKFMDDKDYYGNKRLELAGSLLSLMFEDVFKRFNWEL----KSIAEKTIPKIRATQFDVV 395

Query: 190 NHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
            +MR D ITN L  AI TGNWTI+RF+MER GVTQVLSRLSYIS LGMMTR+NSQFEKTR
Sbjct: 396 KYMRSDLITNCLVYAISTGNWTIKRFRMERLGVTQVLSRLSYISALGMMTRVNSQFEKTR 455

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHI 309
           KVSGPRSLQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT+ DE  ++++  N G+  I
Sbjct: 456 KVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDVDEYPLIRLANNAGVVDI 515

Query: 310 AMFNGEELSSPGVYLVFVNGILAGITCHHKEV 341
            M +G  + SP  + VF+NG + G   ++K++
Sbjct: 516 NMSSGMSIHSPETFFVFLNGNILGTIRNYKKL 547



 Score =  181 bits (458), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 88/136 (64%), Positives = 104/136 (76%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G + F+DFL++G IE+LDVNE NDS IA  E  I   +TTHLEIA FTLLGVCAG     
Sbjct: 609 GIRSFEDFLHDGLIEFLDVNEENDSFIACYEKDI-TDLTTHLEIATFTLLGVCAG----- 662

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    LVPYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NR+DTL+Y+LVY Q PMV+
Sbjct: 663 ---------LVPYPHHNQSPRNTYQCAMGKQAMGTIGYNQKNRMDTLLYSLVYPQAPMVK 713

Query: 808 SKTIRITNFHKLPAGK 823
           +K+I +TNF KLPAG+
Sbjct: 714 TKSIELTNFDKLPAGQ 729



 Score =  131 bits (330), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 64/98 (65%), Positives = 78/98 (79%), Gaps = 3/98 (3%)

Query: 439 KLRQKRFQTYK---KTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSD 495
           KL  KR+ T     KTPVD+ARD L++T +AH+PV N  F+MKA+YL VM++R++ A SD
Sbjct: 280 KLVAKRYVTSASKMKTPVDEARDVLATTVLAHVPVENYNFRMKAIYLGVMVKRVIEAQSD 339

Query: 496 PDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
              +DD+DYYGNKRLELAGSLLSLMFEDVFKRFN ELK
Sbjct: 340 KKFMDDKDYYGNKRLELAGSLLSLMFEDVFKRFNWELK 377



 Score =  115 bits (287), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 50/72 (69%), Positives = 64/72 (88%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQ 400
           V +P+++E FN ++ TTPHECRLRD+TYSAPI+VDIEYTRG+QRV ++ L+IGRMPIML+
Sbjct: 75  VGRPDVDEGFNISKPTTPHECRLRDMTYSAPISVDIEYTRGTQRVSKAGLMIGRMPIMLR 134

Query: 401 SSKCVLRNKTEY 412
           SS CVL NK+EY
Sbjct: 135 SSNCVLTNKSEY 146



 Score = 92.4 bits (228), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 41/65 (63%), Positives = 53/65 (81%)

Query: 111 EIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIH 170
           EI +KWKLV +FLK KGLVK HIDSF+YFINV+IKK+++AN  +  D DPLFY+KY +++
Sbjct: 15  EIEEKWKLVPAFLKVKGLVKQHIDSFNYFINVDIKKIVEANNKLVCDADPLFYVKYTNVY 74

Query: 171 VGIAD 175
           VG  D
Sbjct: 75  VGRPD 79


>gi|224587859|gb|ACN58727.1| DNA-directed RNA polymerase III subunit RPC2 [Salmo salar]
          Length = 814

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 192/264 (72%), Positives = 232/264 (87%), Gaps = 4/264 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMY L Y Q+PMV+++TI + +
Sbjct: 351  GLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLGYPQKPMVKTRTIELID 410

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNAT+AVMSYSGYDIEDALI+NKASLDRGFGRCLVY+N+KC L++Y NQT D+
Sbjct: 411  FEKLPAGQNATVAVMSYSGYDIEDALILNKASLDRGFGRCLVYKNAKCTLRRYTNQTFDK 470

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT----P 1088
            ++GP+L+A TRKP++RH  LD DGI  PGE++  +QVLVNKSMPT++ + +  +     P
Sbjct: 471  VMGPMLDAATRKPIWRHSILDADGICCPGEKVENKQVLVNKSMPTVTQTPLEGSAQPGQP 530

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
            +Y++VPVSYKGS  SY+EKV++SSN++DAFLIK+LLRQTRRPEIGDKFSSRHGQKGV GL
Sbjct: 531  QYRDVPVSYKGSTDSYIEKVMISSNADDAFLIKILLRQTRRPEIGDKFSSRHGQKGVCGL 590

Query: 1149 IVEQEDMPFNESGICPDIIMNPHG 1172
            IV QEDMPF +SGICPDIIMNPHG
Sbjct: 591  IVPQEDMPFCDSGICPDIIMNPHG 614



 Score =  320 bits (820), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 151/190 (79%), Positives = 171/190 (90%)

Query: 1181 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1240
            +Y++VPVSYKGS  SY+EKV++SSN++DAFLIK+LLRQTRRPEIGDKFSSRHGQKGV GL
Sbjct: 531  QYRDVPVSYKGSTDSYIEKVMISSNADDAFLIKILLRQTRRPEIGDKFSSRHGQKGVCGL 590

Query: 1241 IVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKL 1300
            IV QEDMPF +SGICPDIIMNPHGYPSRMTVGKLIELLAGKAG+M+G +  GTAFGG+K+
Sbjct: 591  IVPQEDMPFCDSGICPDIIMNPHGYPSRMTVGKLIELLAGKAGVMDGRFHYGTAFGGSKV 650

Query: 1301 VDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRV 1360
             DV E+LIR+GYNYQGKD   SGITGE +EAYIY GPVYYQKLKHMV DK+HAR+RGPR 
Sbjct: 651  KDVCEDLIRYGYNYQGKDYVTSGITGEPIEAYIYFGPVYYQKLKHMVLDKMHARARGPRA 710

Query: 1361 VLTRQPTGRR 1370
            VLTRQPT  R
Sbjct: 711  VLTRQPTEGR 720



 Score =  257 bits (657), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 124/209 (59%), Positives = 161/209 (77%), Gaps = 4/209 (1%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVNHM 192
           +D  DY+ N  ++   Q  + ++ D+    + K+      I+D+IIPK +AAQFDIV HM
Sbjct: 32  VDDRDYYGNKRLELAGQLLSLLFEDL----FKKFNSELKKISDQIIPKQRAAQFDIVKHM 87

Query: 193 RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVS 252
           RQD ITN +  AI TGNW+++RFKM+RQGVTQVLSRLS+IS LGMMTRI+SQFEKTRKVS
Sbjct: 88  RQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSFISALGMMTRISSQFEKTRKVS 147

Query: 253 GPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMF 312
           GPRSLQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT+ ++  ++K+ +N+G+E + + 
Sbjct: 148 GPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLAFNLGVEDVNLL 207

Query: 313 NGEELSSPGVYLVFVNGILAGITCHHKEV 341
            GEELS P V+LVF+NG + G+   H+ +
Sbjct: 208 CGEELSYPSVFLVFLNGNILGVIRDHQRL 236



 Score =  175 bits (443), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 85/136 (62%), Positives = 101/136 (74%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G++ F+DFL+E  +EYLDVNE ND  IA+ E  I    TTHLEI PFTLLGVCAG     
Sbjct: 298 GYRTFEDFLHESLVEYLDVNEENDCQIALYEHMINKD-TTHLEIEPFTLLGVCAG----- 351

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMY L Y Q+PMV+
Sbjct: 352 ---------LIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLGYPQKPMVK 402

Query: 808 SKTIRITNFHKLPAGK 823
           ++TI + +F KLPAG+
Sbjct: 403 TRTIELIDFEKLPAGQ 418



 Score = 95.9 bits (237), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/70 (62%), Positives = 58/70 (82%), Gaps = 1/70 (1%)

Query: 467 HIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGSLLSLMFEDVFK 526
           H+PV    F+ K +YLAVM+RR++LA  + + +DDRDYYGNKRLELAG LLSL+FED+FK
Sbjct: 1   HVPVKEFNFRAKCIYLAVMVRRVILAQGE-NKVDDRDYYGNKRLELAGQLLSLLFEDLFK 59

Query: 527 RFNSELKETN 536
           +FNSELK+ +
Sbjct: 60  KFNSELKKIS 69


>gi|193786878|dbj|BAG52201.1| unnamed protein product [Homo sapiens]
          Length = 523

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 192/265 (72%), Positives = 230/265 (86%), Gaps = 4/265 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMY L Y Q+PMV++KTI +  
Sbjct: 60   GLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIE 119

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNA +AVMSYSGYDIEDAL++NKASLDRGFGRCLVY+N+KC LK+Y NQT D+
Sbjct: 120  FEKLPAGQNAAVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDK 179

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT----P 1088
            ++GP+L+A TRKP++RH  LD DGI +PGE++  +QVLVNKSMPT++   +  +     P
Sbjct: 180  VMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQP 239

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
            +YK+VP++YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GL
Sbjct: 240  QYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGL 299

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            IV QEDMPF +SGICPDIIMNPHG 
Sbjct: 300  IVPQEDMPFCDSGICPDIIMNPHGF 324



 Score =  318 bits (815), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 174/311 (55%), Positives = 215/311 (69%), Gaps = 26/311 (8%)

Query: 1079 SVSAISMATPEYKEVPVSYKGSVPSYLEKVLVSSNSE-----------DAFLIKMLLRQT 1127
            +V+ +S +  + ++  V  K S+     + LV  N++           D  +  ML   T
Sbjct: 130  AVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLDAAT 189

Query: 1128 RRP----EIGDKFSSRHGQKGVI--GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITE 1181
            R+P    EI D         G+   G  VE + +  N+S   P +   P       +  +
Sbjct: 190  RKPIWRHEILDA-------DGICSPGEKVENKQVLVNKS--MPTVTQIPLEGSNVPQQPQ 240

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
            YK+VP++YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GLI
Sbjct: 241  YKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLI 300

Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
            V QEDMPF +SGICPDIIMNPHG+PSRMTVGKLIELLAGKAG+++G +  GTAFGG+K+ 
Sbjct: 301  VPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSKVK 360

Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
            DV E+L+RHGYNY GKD   SGITGE LEAYIY GPVYYQKLKHMV DK+HAR+RGPR V
Sbjct: 361  DVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAV 420

Query: 1362 LTRQPTGRRWK 1372
            LTRQPT  R +
Sbjct: 421  LTRQPTEGRSR 431



 Score =  176 bits (446), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 86/136 (63%), Positives = 101/136 (74%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G++ F+DFL+E  +EYLDVNE ND +IA+ E  I    TTHLEI PFTLLGVCAG     
Sbjct: 7   GYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKD-TTHLEIEPFTLLGVCAG----- 60

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMY L Y Q+PMV+
Sbjct: 61  ---------LIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVK 111

Query: 808 SKTIRITNFHKLPAGK 823
           +KTI +  F KLPAG+
Sbjct: 112 TKTIELIEFEKLPAGQ 127


>gi|260807868|ref|XP_002598730.1| hypothetical protein BRAFLDRAFT_282817 [Branchiostoma floridae]
 gi|229284004|gb|EEN54742.1| hypothetical protein BRAFLDRAFT_282817 [Branchiostoma floridae]
          Length = 1137

 Score =  418 bits (1074), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 190/263 (72%), Positives = 225/263 (85%), Gaps = 2/263 (0%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ NRIDTL+Y LV+ QRPMV++KTI + +
Sbjct: 676  GLIPYPHHNQSPRNTYQCAMGKQAMGAIGYNQHNRIDTLLYLLVFPQRPMVKTKTIELID 735

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+AVMSYSGYDIEDALI+NK+S+DRGFGRCLVYR   C LK+Y NQT DR
Sbjct: 736  YEKLPAGQNATVAVMSYSGYDIEDALILNKSSVDRGFGRCLVYRKQNCTLKRYSNQTFDR 795

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISM--ATPEY 1090
            ++GP+++A TRKP++RH  LD DGI APGE++  +QVLVNKSMP  +++ +      PEY
Sbjct: 796  VMGPMVDAATRKPIWRHEILDVDGICAPGERVQNKQVLVNKSMPKQTMNPVQTPGQQPEY 855

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++VP++YKG V SY+E VLVSSN E+AFLIKMLLRQTRRPEIGDKFSSRHGQKGV GLIV
Sbjct: 856  QDVPITYKGPVDSYVETVLVSSNQEEAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIV 915

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF + GICPDIIMNPHG 
Sbjct: 916  NQEDMPFTDQGICPDIIMNPHGF 938



 Score =  320 bits (819), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 153/207 (73%), Positives = 174/207 (84%), Gaps = 2/207 (0%)

Query: 1164 PDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPE 1223
            P   MNP    G  +  EY++VP++YKG V SY+E VLVSSN E+AFLIKMLLRQTRRPE
Sbjct: 839  PKQTMNPVQTPG--QQPEYQDVPITYKGPVDSYVETVLVSSNQEEAFLIKMLLRQTRRPE 896

Query: 1224 IGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAG 1283
            IGDKFSSRHGQKGV GLIV QEDMPF + GICPDIIMNPHG+PSRMTVGKL+ELLAGKAG
Sbjct: 897  IGDKFSSRHGQKGVCGLIVNQEDMPFTDQGICPDIIMNPHGFPSRMTVGKLMELLAGKAG 956

Query: 1284 LMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKL 1343
            ++EG +  GTAFGG+K+ DV EEL++HG+NYQGKD   SGITGE L AYIY+GPVYYQKL
Sbjct: 957  VLEGKFHYGTAFGGSKVKDVCEELVQHGFNYQGKDYLTSGITGEPLNAYIYTGPVYYQKL 1016

Query: 1344 KHMVQDKIHARSRGPRVVLTRQPTGRR 1370
            KHMV DKIHAR++GPR VLTRQPT  R
Sbjct: 1017 KHMVLDKIHARAKGPRAVLTRQPTEGR 1043



 Score =  259 bits (663), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 125/211 (59%), Positives = 161/211 (76%), Gaps = 4/211 (1%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVNHM 192
           +D  DY+ N  ++   Q  A ++ D+    + K+      IAD+ IPK +AAQFDIV HM
Sbjct: 341 VDDRDYYGNKRLELAGQLLALLFEDL----FKKFNAELKKIADQTIPKPRAAQFDIVKHM 396

Query: 193 RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVS 252
           RQD ITN L  AI TGNWT++RFKM+R GVTQVLSRLS+IS LGMMTRI+SQFEKTRKVS
Sbjct: 397 RQDQITNGLVNAISTGNWTVKRFKMDRAGVTQVLSRLSFISALGMMTRISSQFEKTRKVS 456

Query: 253 GPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMF 312
           GPRSLQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT+++E+ + ++ +N+G+E + + 
Sbjct: 457 GPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDSEEQPIQRLAFNLGVEDVHLL 516

Query: 313 NGEELSSPGVYLVFVNGILAGITCHHKEVCK 343
           +GEEL+S   YLV +NG + G+ C H+ + +
Sbjct: 517 SGEELNSQDSYLVMLNGNILGVICDHQHLIR 547



 Score =  170 bits (431), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 88/165 (53%), Positives = 106/165 (64%), Gaps = 32/165 (19%)

Query: 677 RPTFLNMH---QFLGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGV-------- 725
           RP   N H      G++ F+DFL EG +EYLDVNE ND +I + E+ I            
Sbjct: 593 RPMVTNRHIEELTKGYRAFEDFLREGLVEYLDVNEENDCNITLYEADITREDETTLEHLQ 652

Query: 726 -------TTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQ 778
                  TTHLEI PFT+LGVCAG              L+PYPHHNQ+PRNTYQCAMGKQ
Sbjct: 653 CFVSCRDTTHLEIEPFTILGVCAG--------------LIPYPHHNQSPRNTYQCAMGKQ 698

Query: 779 AMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
           AMG IGYNQ NRIDTL+Y LV+ QRPMV++KTI + ++ KLPAG+
Sbjct: 699 AMGAIGYNQHNRIDTLLYLLVFPQRPMVKTKTIELIDYEKLPAGQ 743



 Score =  117 bits (293), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 54/96 (56%), Positives = 78/96 (81%), Gaps = 1/96 (1%)

Query: 439 KLRQKRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDM 498
           K+R+ R+   K+T V++AR+ L ST +AH+PV+   F++K +YLA+M+RR+V A +  D 
Sbjct: 282 KVRRSRWGGPKRTRVEEAREVLHSTILAHVPVVKFNFRLKCVYLALMVRRVVQAQAQ-DR 340

Query: 499 LDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELKE 534
           +DDRDYYGNKRLELAG LL+L+FED+FK+FN+ELK+
Sbjct: 341 VDDRDYYGNKRLELAGQLLALLFEDLFKKFNAELKK 376



 Score =  112 bits (281), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 60/110 (54%), Positives = 76/110 (69%), Gaps = 12/110 (10%)

Query: 303 NIGIEHIAMFNGEELSS--PGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHE 360
           N+ I+ I   N + +S   P  YL ++N I  G+         P++EE FN T+   PHE
Sbjct: 44  NVEIKKIMKANEKIVSDADPNFYLKYLN-IYVGM---------PDVEEGFNITKPIAPHE 93

Query: 361 CRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
           CRLRD+TYSAPITVDIEYTRG+QRVVR++L IGRMPIML+SS CVL  K+
Sbjct: 94  CRLRDMTYSAPITVDIEYTRGNQRVVRNNLPIGRMPIMLRSSNCVLTGKS 143



 Score = 98.6 bits (244), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 45/64 (70%), Positives = 55/64 (85%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           I++KWKL+ +FLK KGLVK HIDSF+YFINVEIKK+M+AN  I SD DP FYLKYL+I+V
Sbjct: 15  IQEKWKLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKIVSDADPNFYLKYLNIYV 74

Query: 172 GIAD 175
           G+ D
Sbjct: 75  GMPD 78


>gi|195431078|ref|XP_002063575.1| GK21338 [Drosophila willistoni]
 gi|194159660|gb|EDW74561.1| GK21338 [Drosophila willistoni]
          Length = 999

 Score =  414 bits (1063), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 188/264 (71%), Positives = 230/264 (87%), Gaps = 3/264 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GLVPYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRID+LMYNLVY Q PMV+SKTI +TN
Sbjct: 539  GLVPYPHHNQSPRNTYQCAMGKQAMGMIGYNQKNRIDSLMYNLVYPQAPMVKSKTIELTN 598

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F K+PAGQNAT+AVMSYSGYDIEDALI+NKAS+DRG+GRCLVY+NSKC +K+Y NQT DR
Sbjct: 599  FDKVPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKRYANQTFDR 658

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAISMATPE-- 1089
            I+GP+ +A T K +++H  LD DGIV+PGEQ+  +Q+++NK MP + S++ +   +P+  
Sbjct: 659  IMGPVKDALTNKVIFKHDVLDTDGIVSPGEQVQNKQIMINKEMPAVTSINPLEGQSPQVP 718

Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
            Y  VP+SYKGS PSY+E+V+VS+N+E+ FLIK+LLRQTR PEIGDKFSSRHGQKGV GLI
Sbjct: 719  YTAVPISYKGSEPSYVERVMVSANAEEDFLIKILLRQTRIPEIGDKFSSRHGQKGVTGLI 778

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
            V+QEDMPFN+ GICPD+IMNPHG 
Sbjct: 779  VDQEDMPFNDFGICPDMIMNPHGF 802



 Score =  318 bits (815), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 148/203 (72%), Positives = 174/203 (85%), Gaps = 2/203 (0%)

Query: 1168 MNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDK 1227
            +NP  L+G      Y  VP+SYKGS PSY+E+V+VS+N+E+ FLIK+LLRQTR PEIGDK
Sbjct: 707  INP--LEGQSPQVPYTAVPISYKGSEPSYVERVMVSANAEEDFLIKILLRQTRIPEIGDK 764

Query: 1228 FSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEG 1287
            FSSRHGQKGV GLIV+QEDMPFN+ GICPD+IMNPHG+PSRMTVGK +ELL GKAG++EG
Sbjct: 765  FSSRHGQKGVTGLIVDQEDMPFNDFGICPDMIMNPHGFPSRMTVGKTLELLGGKAGVLEG 824

Query: 1288 NYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMV 1347
             +  GTAFGG+K+ D+Q EL+RHG+NY GKD FYSGITG  LEAYIYSGPVYYQKLKHMV
Sbjct: 825  KFHYGTAFGGSKVQDIQAELVRHGFNYMGKDFFYSGITGAPLEAYIYSGPVYYQKLKHMV 884

Query: 1348 QDKIHARSRGPRVVLTRQPTGRR 1370
            QDK+HAR+RGP+ VLTRQPT  R
Sbjct: 885  QDKMHARARGPKAVLTRQPTQGR 907



 Score =  256 bits (653), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 132/216 (61%), Positives = 160/216 (74%), Gaps = 4/216 (1%)

Query: 128 LVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFD 187
           L K   D  DY+ N   K+L  A + I    + LF     ++ + IADK IPK+KAAQFD
Sbjct: 215 LDKTLFDDRDYYGN---KRLELAGSLISLMFEDLFKRMNWELKM-IADKNIPKVKAAQFD 270

Query: 188 IVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEK 247
           +V HMR   IT  L +AI +GNWTI+RFKMER GVTQVLSRLSYIS LGMMTR+NSQFEK
Sbjct: 271 VVKHMRAAQITAGLESAISSGNWTIKRFKMERGGVTQVLSRLSYISALGMMTRVNSQFEK 330

Query: 248 TRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIE 307
           +RKVSGPRSLQ SQWGMLCPSDTPEGEACGLVKNLALMTHITTE DE  ++ + YN G+E
Sbjct: 331 SRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVDEHPVMILAYNAGVE 390

Query: 308 HIAMFNGEELSSPGVYLVFVNGILAGITCHHKEVCK 343
            I   +G  +++P V+LVF+NG + G+T +HK + K
Sbjct: 391 DIREVSGNPINNPHVFLVFINGNVLGLTLNHKHLVK 426



 Score =  192 bits (489), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 94/136 (69%), Positives = 104/136 (76%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G ++FDDFL +G IEYLDVNE NDS IA  E  I P  TTHLEI PFTLLGVCAG     
Sbjct: 486 GIRKFDDFLLDGLIEYLDVNEENDSFIACYEENINP-TTTHLEIEPFTLLGVCAG----- 539

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    LVPYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRID+LMYNLVY Q PMV+
Sbjct: 540 ---------LVPYPHHNQSPRNTYQCAMGKQAMGMIGYNQKNRIDSLMYNLVYPQAPMVK 590

Query: 808 SKTIRITNFHKLPAGK 823
           SKTI +TNF K+PAG+
Sbjct: 591 SKTIELTNFDKVPAGQ 606



 Score =  124 bits (310), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 60/96 (62%), Positives = 76/96 (79%), Gaps = 1/96 (1%)

Query: 439 KLRQKRFQTYK-KTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPD 497
           KL  KRFQ+   KTP ++ARD L +T +AH+PV N  F+MKA+Y+A+M+RR++ A  D  
Sbjct: 159 KLVVKRFQSATTKTPPEEARDLLMTTILAHVPVDNFNFQMKAIYVALMVRRVMAAELDKT 218

Query: 498 MLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
           + DDRDYYGNKRLELAGSL+SLMFED+FKR N ELK
Sbjct: 219 LFDDRDYYGNKRLELAGSLISLMFEDLFKRMNWELK 254


>gi|357610728|gb|EHJ67119.1| hypothetical protein KGM_22531 [Danaus plexippus]
          Length = 1085

 Score =  414 bits (1063), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 191/264 (72%), Positives = 227/264 (85%), Gaps = 3/264 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GLVPYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMYNLVY Q PMV+++TI +TN
Sbjct: 625  GLVPYPHHNQSPRNTYQCAMGKQAMGTIGYNQKNRIDTLMYNLVYPQCPMVKTRTIELTN 684

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNAT+AVMSYSGYDIEDALI+N+AS+DRG+GRCLVY+++K ++K+Y NQT DR
Sbjct: 685  FDKLPAGQNATVAVMSYSGYDIEDALILNRASIDRGYGRCLVYKSAKTIMKRYSNQTSDR 744

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATP---E 1089
            ILGP  +A+T K +  H  LD DGI APGE +  RQVL+NK MP  +++ I+   P   +
Sbjct: 745  ILGPSRDANTGKVIKAHEVLDSDGIAAPGEMVENRQVLINKQMPPATLNPINQGQPQQID 804

Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
            YK+VP++YKG V SY+EKV+VSSNSEDAFLIK+LLRQTR PEIGDKFSSRHGQKGV GLI
Sbjct: 805  YKDVPITYKGPVESYIEKVMVSSNSEDAFLIKILLRQTRIPEIGDKFSSRHGQKGVTGLI 864

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
            V+QEDMPFN+ GICPD+IMNPHG 
Sbjct: 865  VQQEDMPFNDRGICPDMIMNPHGF 888



 Score =  333 bits (855), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 163/226 (72%), Positives = 188/226 (83%), Gaps = 3/226 (1%)

Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNS 1206
            G +VE   +  N+    P   +NP   +G  +  +YK+VP++YKG V SY+EKV+VSSNS
Sbjct: 773  GEMVENRQVLINKQ--MPPATLNPIN-QGQPQQIDYKDVPITYKGPVESYIEKVMVSSNS 829

Query: 1207 EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYP 1266
            EDAFLIK+LLRQTR PEIGDKFSSRHGQKGV GLIV+QEDMPFN+ GICPD+IMNPHG+P
Sbjct: 830  EDAFLIKILLRQTRIPEIGDKFSSRHGQKGVTGLIVQQEDMPFNDRGICPDMIMNPHGFP 889

Query: 1267 SRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITG 1326
            SRMTVGK IELLAGKAGLMEG +  GTAFGG+K+ DV +EL +HGYNY GKDIFYSGITG
Sbjct: 890  SRMTVGKTIELLAGKAGLMEGKFHYGTAFGGSKVRDVCQELEKHGYNYHGKDIFYSGITG 949

Query: 1327 EALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
            E LEAYIYSGPVYYQKLKHMVQDK+HAR+RGPR VLTRQPT  R +
Sbjct: 950  EPLEAYIYSGPVYYQKLKHMVQDKMHARARGPRAVLTRQPTEGRSR 995



 Score =  223 bits (569), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 117/214 (54%), Positives = 144/214 (67%), Gaps = 24/214 (11%)

Query: 130 KPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIV 189
           K  ID  DY+ N  ++      A ++ D+   F  +       IADKIIP++KAA FD  
Sbjct: 322 KAAIDDPDYYGNKRLELAGSLLALMFEDLFKRFNWEL----KSIADKIIPRVKAAPFD-- 375

Query: 190 NHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
                             GNWTI+RFKMER GVTQVLSRLSYIS LGMMTR+NSQFEKTR
Sbjct: 376 ------------------GNWTIKRFKMERHGVTQVLSRLSYISALGMMTRVNSQFEKTR 417

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHI 309
           KVSGPRSLQ SQWGMLCPSDTPEGEACGLVKNLALMTHITTE  E  + ++  N G+E +
Sbjct: 418 KVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTECSEGPISRLACNAGVEDV 477

Query: 310 AMFNGEELSSPGVYLVFVNGILAGITCHHKEVCK 343
            +  GEE++ P +Y+VF+NG + G+T  +K++ K
Sbjct: 478 RLLGGEEINHPALYMVFLNGNILGVTREYKKLIK 511



 Score =  196 bits (499), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 94/136 (69%), Positives = 106/136 (77%), Gaps = 14/136 (10%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G ++F DFL +G IEYLDVNE NDSHIA  E+ I P VTTHLEI PFT+LGVCAG     
Sbjct: 571 GIRKFQDFLNDGLIEYLDVNEENDSHIATVETEIDPYVTTHLEIEPFTILGVCAG----- 625

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    LVPYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMYNLVY Q PMV+
Sbjct: 626 ---------LVPYPHHNQSPRNTYQCAMGKQAMGTIGYNQKNRIDTLMYNLVYPQCPMVK 676

Query: 808 SKTIRITNFHKLPAGK 823
           ++TI +TNF KLPAG+
Sbjct: 677 TRTIELTNFDKLPAGQ 692



 Score =  120 bits (300), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 57/98 (58%), Positives = 78/98 (79%), Gaps = 3/98 (3%)

Query: 439 KLRQKRFQTYK---KTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSD 495
           KL+ KRFQ+     +TPVD+ARD +++T +AH+ V N  F +KA+YLA+M++R++ A ++
Sbjct: 262 KLKVKRFQSATSKFRTPVDEARDLIATTILAHVVVENYNFYVKAIYLAIMVKRVIEAETN 321

Query: 496 PDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
              +DD DYYGNKRLELAGSLL+LMFED+FKRFN ELK
Sbjct: 322 KAAIDDPDYYGNKRLELAGSLLALMFEDLFKRFNWELK 359



 Score =  107 bits (266), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 52/96 (54%), Positives = 69/96 (71%), Gaps = 11/96 (11%)

Query: 318 SSPGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIE 377
           S P  Y+ ++N            V  P++EE FN T+ TTPHECRLRD+TYSAPITVDIE
Sbjct: 41  SDPLFYIKYLNAY----------VGTPDLEEGFNVTKPTTPHECRLRDMTYSAPITVDIE 90

Query: 378 YTRGSQRVV-RSDLVIGRMPIMLQSSKCVLRNKTEY 412
           Y RG+QRV+ ++  +IGRMP+ML+SS CVL NK+++
Sbjct: 91  YIRGNQRVIFKNKQLIGRMPLMLRSSNCVLTNKSDF 126



 Score = 45.1 bits (105), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 26/34 (76%)

Query: 142 VEIKKLMQANANIYSDVDPLFYLKYLDIHVGIAD 175
           +E KK++QAN  ++ D DPLFY+KYL+ +VG  D
Sbjct: 25  LEKKKIVQANEKVFCDSDPLFYIKYLNAYVGTPD 58


>gi|195485554|ref|XP_002091138.1| GE12399 [Drosophila yakuba]
 gi|194177239|gb|EDW90850.1| GE12399 [Drosophila yakuba]
          Length = 1137

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 190/265 (71%), Positives = 225/265 (84%), Gaps = 5/265 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GLVPYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRID+LMYNLVY   PMV+SKTI +TN
Sbjct: 677  GLVPYPHHNQSPRNTYQCAMGKQAMGMIGYNQKNRIDSLMYNLVYPHAPMVKSKTIELTN 736

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNAT+AVMSYSGYDIEDALI+NKAS+DRG+GRCLVY+NSKC +K+Y NQT DR
Sbjct: 737  FDKLPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKRYANQTFDR 796

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTIS----VSAISMATP 1088
            I+GP+ +A T K +++H  LD DGIVAPGEQ+  +Q+++NK MP ++    +   S   P
Sbjct: 797  IMGPMKDALTNKVIFKHDVLDTDGIVAPGEQVQNKQIMINKEMPAVTSMNPLQGQSAQVP 856

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
             Y  VP+SYKG  PSY+E+V+VS+NSE+ FLIK+LLRQTR PEIGDKFSSRHGQKGV GL
Sbjct: 857  -YTAVPISYKGPEPSYVERVMVSANSEEDFLIKILLRQTRIPEIGDKFSSRHGQKGVTGL 915

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            IVEQEDMPFN+ GICPD+IMNPHG 
Sbjct: 916  IVEQEDMPFNDFGICPDMIMNPHGF 940



 Score =  319 bits (818), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 151/203 (74%), Positives = 172/203 (84%), Gaps = 2/203 (0%)

Query: 1168 MNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDK 1227
            MNP  L+G      Y  VP+SYKG  PSY+E+V+VS+NSE+ FLIK+LLRQTR PEIGDK
Sbjct: 845  MNP--LQGQSAQVPYTAVPISYKGPEPSYVERVMVSANSEEDFLIKILLRQTRIPEIGDK 902

Query: 1228 FSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEG 1287
            FSSRHGQKGV GLIVEQEDMPFN+ GICPD+IMNPHG+PSRMTVGK +ELL GKAGL+EG
Sbjct: 903  FSSRHGQKGVTGLIVEQEDMPFNDFGICPDMIMNPHGFPSRMTVGKTLELLGGKAGLLEG 962

Query: 1288 NYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMV 1347
             +  GTAFGG+K+ D+Q EL RHG+NY GKD FYSGITG  LEAYIYSGPVYYQKLKHMV
Sbjct: 963  KFHYGTAFGGSKVEDIQAELERHGFNYVGKDFFYSGITGTPLEAYIYSGPVYYQKLKHMV 1022

Query: 1348 QDKIHARSRGPRVVLTRQPTGRR 1370
            QDK+HAR+RGP+ VLTRQPT  R
Sbjct: 1023 QDKMHARARGPKAVLTRQPTQGR 1045



 Score =  254 bits (650), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 129/216 (59%), Positives = 160/216 (74%), Gaps = 4/216 (1%)

Query: 128 LVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFD 187
           L K   D  DY+ N   K+L  A + +    + LF     ++   IADK IPK+KAAQFD
Sbjct: 353 LDKTLFDDRDYYGN---KRLELAGSLLSMMFEDLFKRMNWELKT-IADKNIPKVKAAQFD 408

Query: 188 IVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEK 247
           +V HMR   IT  L +AI +GNWTI+RFKMER GVTQVLSRLSYIS LGMMTR+NSQFEK
Sbjct: 409 VVKHMRAAQITAGLESAISSGNWTIKRFKMERAGVTQVLSRLSYISALGMMTRVNSQFEK 468

Query: 248 TRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIE 307
           TRKVSGPRSLQ SQWGMLCPSDTPEGEACGLVKNLALMTHITTE +E+ ++ + +N G+E
Sbjct: 469 TRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVEERPVMIVAFNAGVE 528

Query: 308 HIAMFNGEELSSPGVYLVFVNGILAGITCHHKEVCK 343
            I   +G  +++P V+LVF+NG + G+T +HK + +
Sbjct: 529 DIREVSGNPINNPNVFLVFINGNVLGLTLNHKHLVR 564



 Score =  188 bits (477), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 93/136 (68%), Positives = 103/136 (75%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G ++FDDFL +G IEYLDVNE NDS IA +E  I    TTHLEI PFTLLGVCAG     
Sbjct: 624 GIRKFDDFLLDGLIEYLDVNEENDSFIAWNEDQIEDR-TTHLEIEPFTLLGVCAG----- 677

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    LVPYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRID+LMYNLVY   PMV+
Sbjct: 678 ---------LVPYPHHNQSPRNTYQCAMGKQAMGMIGYNQKNRIDSLMYNLVYPHAPMVK 728

Query: 808 SKTIRITNFHKLPAGK 823
           SKTI +TNF KLPAG+
Sbjct: 729 SKTIELTNFDKLPAGQ 744



 Score =  118 bits (296), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 57/96 (59%), Positives = 75/96 (78%), Gaps = 1/96 (1%)

Query: 439 KLRQKRFQTYK-KTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPD 497
           KL  KRFQ+   KTP ++AR+ L +T +AH+PV N   +MKA+Y+++M+RR++ A  D  
Sbjct: 297 KLVVKRFQSATTKTPSEEARELLLTTILAHVPVDNFNLQMKAIYVSLMVRRVMAAELDKT 356

Query: 498 MLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
           + DDRDYYGNKRLELAGSLLS+MFED+FKR N ELK
Sbjct: 357 LFDDRDYYGNKRLELAGSLLSMMFEDLFKRMNWELK 392



 Score =  112 bits (280), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 50/75 (66%), Positives = 62/75 (82%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQ 400
           V KP+I+E FN T+ TTPHECRLRD TYSAPITVDIEYTRG+QR+ R++L+IGRMP+ML+
Sbjct: 90  VGKPDIDEGFNITKATTPHECRLRDTTYSAPITVDIEYTRGTQRIKRNNLLIGRMPLMLR 149

Query: 401 SSKCVLRNKTEYTSS 415
            S C L  K+E+  S
Sbjct: 150 CSNCALTGKSEFELS 164



 Score = 88.2 bits (217), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 40/64 (62%), Positives = 52/64 (81%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           + +KWKLV +FL+ KGLVK HIDSF++FINV+IKK+++AN  + S  DPLFYLKYLD+ V
Sbjct: 31  LTEKWKLVPAFLQVKGLVKQHIDSFNHFINVDIKKIVKANELVTSGADPLFYLKYLDVRV 90

Query: 172 GIAD 175
           G  D
Sbjct: 91  GKPD 94


>gi|195153847|ref|XP_002017835.1| GL17093 [Drosophila persimilis]
 gi|194113631|gb|EDW35674.1| GL17093 [Drosophila persimilis]
          Length = 1137

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 189/265 (71%), Positives = 227/265 (85%), Gaps = 5/265 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GLVPYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRID+LMYNLVY Q PMV++KTI +TN
Sbjct: 677  GLVPYPHHNQSPRNTYQCAMGKQAMGMIGYNQKNRIDSLMYNLVYPQAPMVKTKTIELTN 736

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNAT+AVMS+SGYDIEDALI+NKAS+DRG+GRCLVY+NSKC +K+Y NQT DR
Sbjct: 737  FDKLPAGQNATVAVMSFSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKRYANQTFDR 796

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTIS----VSAISMATP 1088
            I+GP+ +A T K +++H  LD DGIVAPGEQI  +Q+++NK MP ++    +   S   P
Sbjct: 797  IMGPVKDALTNKVIFKHDVLDTDGIVAPGEQILNKQIMINKEMPAVTSLNPLEGQSTQVP 856

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
             Y  VP+SYKG  PSY+E+V+VS+NSE+ FLIK+LLRQTR PEIGDKFSSRHGQKGV GL
Sbjct: 857  -YTAVPISYKGPEPSYVERVMVSANSEEDFLIKILLRQTRIPEIGDKFSSRHGQKGVTGL 915

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            IV+QEDMP+N+SGICPD+IMNPHG 
Sbjct: 916  IVDQEDMPYNDSGICPDMIMNPHGF 940



 Score =  315 bits (807), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 147/203 (72%), Positives = 173/203 (85%), Gaps = 2/203 (0%)

Query: 1168 MNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDK 1227
            +NP  L+G      Y  VP+SYKG  PSY+E+V+VS+NSE+ FLIK+LLRQTR PEIGDK
Sbjct: 845  LNP--LEGQSTQVPYTAVPISYKGPEPSYVERVMVSANSEEDFLIKILLRQTRIPEIGDK 902

Query: 1228 FSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEG 1287
            FSSRHGQKGV GLIV+QEDMP+N+SGICPD+IMNPHG+PSRMTVGK +ELL GKAG++EG
Sbjct: 903  FSSRHGQKGVTGLIVDQEDMPYNDSGICPDMIMNPHGFPSRMTVGKTLELLGGKAGVLEG 962

Query: 1288 NYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMV 1347
             +  GTAFGG+K+ D+Q EL RHG+NY GKD FYSGITG  L+AYIYSGPVYYQKLKHMV
Sbjct: 963  KFHYGTAFGGSKVGDIQAELERHGFNYMGKDFFYSGITGAPLQAYIYSGPVYYQKLKHMV 1022

Query: 1348 QDKIHARSRGPRVVLTRQPTGRR 1370
            QDK+HAR+RGP+ VLTRQPT  R
Sbjct: 1023 QDKMHARARGPKAVLTRQPTQGR 1045



 Score =  255 bits (651), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 130/216 (60%), Positives = 161/216 (74%), Gaps = 4/216 (1%)

Query: 128 LVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFD 187
           L K   D  DY+ N   K+L  A + I    + LF     ++ + IADK IPK+KAAQFD
Sbjct: 353 LDKTLFDDRDYYGN---KRLELAGSLISLMFEDLFKRMNWELKM-IADKNIPKVKAAQFD 408

Query: 188 IVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEK 247
           +V HMR   IT  L +AI +GNWTI+RFKMER GVTQVLSRLSYIS LGMMTR+NSQFEK
Sbjct: 409 VVKHMRAAQITAGLESAISSGNWTIKRFKMERAGVTQVLSRLSYISALGMMTRVNSQFEK 468

Query: 248 TRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIE 307
           TRKVSGPRSLQ SQWGMLCPSDTPEGEACGLVKNLALMTHITTE +E+ ++ + +N G+E
Sbjct: 469 TRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVEERPVMILAFNAGVE 528

Query: 308 HIAMFNGEELSSPGVYLVFVNGILAGITCHHKEVCK 343
            I   +G  +++P V+LVF+NG + G+T +HK + +
Sbjct: 529 DIREVSGNPINNPNVFLVFINGNVLGLTLNHKHLVR 564



 Score =  192 bits (487), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 94/136 (69%), Positives = 105/136 (77%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G ++FDDFL +G IEYLDVNE NDS IA +E  I  G TTHLEI PFTLLGVCAG     
Sbjct: 624 GVRKFDDFLLDGLIEYLDVNEENDSFIAWNEEHIEEG-TTHLEIEPFTLLGVCAG----- 677

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    LVPYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRID+LMYNLVY Q PMV+
Sbjct: 678 ---------LVPYPHHNQSPRNTYQCAMGKQAMGMIGYNQKNRIDSLMYNLVYPQAPMVK 728

Query: 808 SKTIRITNFHKLPAGK 823
           +KTI +TNF KLPAG+
Sbjct: 729 TKTIELTNFDKLPAGQ 744



 Score =  120 bits (302), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 58/96 (60%), Positives = 76/96 (79%), Gaps = 1/96 (1%)

Query: 439 KLRQKRFQTYK-KTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPD 497
           KL  KRFQ+   KTP ++AR+ L +T +AH+PV N  F+MKA+Y+++M+RR++ A  D  
Sbjct: 297 KLVVKRFQSATTKTPAEEARELLLTTILAHVPVDNFNFQMKAIYVSMMVRRVMSAELDKT 356

Query: 498 MLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
           + DDRDYYGNKRLELAGSL+SLMFED+FKR N ELK
Sbjct: 357 LFDDRDYYGNKRLELAGSLISLMFEDLFKRMNWELK 392



 Score =  110 bits (274), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 48/75 (64%), Positives = 63/75 (84%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQ 400
           V KP+I++ +N T+ TTPHECRLRD TYS+PITVDIEYTRG+QR+ R++L+IGRMP+ML+
Sbjct: 90  VGKPDIDDGYNITKATTPHECRLRDTTYSSPITVDIEYTRGTQRIKRNNLLIGRMPLMLR 149

Query: 401 SSKCVLRNKTEYTSS 415
            S CVL  K+E+  S
Sbjct: 150 CSNCVLTGKSEFELS 164



 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/64 (59%), Positives = 52/64 (81%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           + +KWKL+ +FL+ KGLV+ HIDSF++FINV+IKK+++AN  + S  DPLFYLKYLD+ V
Sbjct: 31  LEEKWKLLPAFLQVKGLVRQHIDSFNHFINVDIKKIVRANELVTSGADPLFYLKYLDVRV 90

Query: 172 GIAD 175
           G  D
Sbjct: 91  GKPD 94


>gi|125808948|ref|XP_001360931.1| GA21006 [Drosophila pseudoobscura pseudoobscura]
 gi|54636103|gb|EAL25506.1| GA21006 [Drosophila pseudoobscura pseudoobscura]
          Length = 1137

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 189/265 (71%), Positives = 227/265 (85%), Gaps = 5/265 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GLVPYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRID+LMYNLVY Q PMV++KTI +TN
Sbjct: 677  GLVPYPHHNQSPRNTYQCAMGKQAMGMIGYNQKNRIDSLMYNLVYPQAPMVKTKTIELTN 736

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNAT+AVMS+SGYDIEDALI+NKAS+DRG+GRCLVY+NSKC +K+Y NQT DR
Sbjct: 737  FDKLPAGQNATVAVMSFSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKRYANQTFDR 796

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTIS----VSAISMATP 1088
            I+GP+ +A T K +++H  LD DGIVAPGEQI  +Q+++NK MP ++    +   S   P
Sbjct: 797  IMGPVKDALTNKVIFKHDVLDTDGIVAPGEQILNKQIMINKEMPAVTSLNPLEGQSTQVP 856

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
             Y  VP+SYKG  PSY+E+V+VS+NSE+ FLIK+LLRQTR PEIGDKFSSRHGQKGV GL
Sbjct: 857  -YTAVPISYKGPEPSYVERVMVSANSEEDFLIKILLRQTRIPEIGDKFSSRHGQKGVTGL 915

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            IV+QEDMP+N+SGICPD+IMNPHG 
Sbjct: 916  IVDQEDMPYNDSGICPDMIMNPHGF 940



 Score =  315 bits (807), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 147/203 (72%), Positives = 173/203 (85%), Gaps = 2/203 (0%)

Query: 1168 MNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDK 1227
            +NP  L+G      Y  VP+SYKG  PSY+E+V+VS+NSE+ FLIK+LLRQTR PEIGDK
Sbjct: 845  LNP--LEGQSTQVPYTAVPISYKGPEPSYVERVMVSANSEEDFLIKILLRQTRIPEIGDK 902

Query: 1228 FSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEG 1287
            FSSRHGQKGV GLIV+QEDMP+N+SGICPD+IMNPHG+PSRMTVGK +ELL GKAG++EG
Sbjct: 903  FSSRHGQKGVTGLIVDQEDMPYNDSGICPDMIMNPHGFPSRMTVGKTLELLGGKAGVLEG 962

Query: 1288 NYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMV 1347
             +  GTAFGG+K+ D+Q EL RHG+NY GKD FYSGITG  L+AYIYSGPVYYQKLKHMV
Sbjct: 963  KFHYGTAFGGSKVGDIQAELERHGFNYMGKDFFYSGITGAPLQAYIYSGPVYYQKLKHMV 1022

Query: 1348 QDKIHARSRGPRVVLTRQPTGRR 1370
            QDK+HAR+RGP+ VLTRQPT  R
Sbjct: 1023 QDKMHARARGPKAVLTRQPTQGR 1045



 Score =  255 bits (651), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 130/216 (60%), Positives = 161/216 (74%), Gaps = 4/216 (1%)

Query: 128 LVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFD 187
           L K   D  DY+ N   K+L  A + I    + LF     ++ + IADK IPK+KAAQFD
Sbjct: 353 LDKTLFDDRDYYGN---KRLELAGSLISLMFEDLFKRMNWELKM-IADKNIPKVKAAQFD 408

Query: 188 IVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEK 247
           +V HMR   IT  L +AI +GNWTI+RFKMER GVTQVLSRLSYIS LGMMTR+NSQFEK
Sbjct: 409 VVKHMRAAQITAGLESAISSGNWTIKRFKMERAGVTQVLSRLSYISALGMMTRVNSQFEK 468

Query: 248 TRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIE 307
           TRKVSGPRSLQ SQWGMLCPSDTPEGEACGLVKNLALMTHITTE +E+ ++ + +N G+E
Sbjct: 469 TRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVEERPVMILAFNAGVE 528

Query: 308 HIAMFNGEELSSPGVYLVFVNGILAGITCHHKEVCK 343
            I   +G  +++P V+LVF+NG + G+T +HK + +
Sbjct: 529 DIREVSGNPINNPNVFLVFINGNVLGLTLNHKHLVR 564



 Score =  192 bits (487), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 94/136 (69%), Positives = 105/136 (77%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G ++FDDFL +G IEYLDVNE NDS IA +E  I  G TTHLEI PFTLLGVCAG     
Sbjct: 624 GVRKFDDFLLDGLIEYLDVNEENDSFIAWNEEHIEEG-TTHLEIEPFTLLGVCAG----- 677

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    LVPYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRID+LMYNLVY Q PMV+
Sbjct: 678 ---------LVPYPHHNQSPRNTYQCAMGKQAMGMIGYNQKNRIDSLMYNLVYPQAPMVK 728

Query: 808 SKTIRITNFHKLPAGK 823
           +KTI +TNF KLPAG+
Sbjct: 729 TKTIELTNFDKLPAGQ 744



 Score =  122 bits (307), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 59/96 (61%), Positives = 76/96 (79%), Gaps = 1/96 (1%)

Query: 439 KLRQKRFQTYK-KTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPD 497
           KL  KRFQ+   KTP ++ARD L +T +AH+PV N  F+MKA+Y+++M+RR++ A  D  
Sbjct: 297 KLVVKRFQSATTKTPAEEARDLLLTTILAHVPVDNFNFQMKAIYVSMMVRRVMSAELDKT 356

Query: 498 MLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
           + DDRDYYGNKRLELAGSL+SLMFED+FKR N ELK
Sbjct: 357 LFDDRDYYGNKRLELAGSLISLMFEDLFKRMNWELK 392



 Score =  110 bits (274), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 48/75 (64%), Positives = 63/75 (84%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQ 400
           V KP+I++ +N T+ TTPHECRLRD TYS+PITVDIEYTRG+QR+ R++L+IGRMP+ML+
Sbjct: 90  VGKPDIDDGYNITKATTPHECRLRDTTYSSPITVDIEYTRGTQRIKRNNLLIGRMPLMLR 149

Query: 401 SSKCVLRNKTEYTSS 415
            S CVL  K+E+  S
Sbjct: 150 CSNCVLTGKSEFELS 164



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/64 (59%), Positives = 52/64 (81%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           + +KWKL+ +FL+ KGLV+ HIDSF++FINV+IKK+++AN  + S  DPLFYLKYLD+ V
Sbjct: 31  LEEKWKLLPAFLQVKGLVRQHIDSFNHFINVDIKKIVRANELVTSGADPLFYLKYLDVRV 90

Query: 172 GIAD 175
           G  D
Sbjct: 91  GKPD 94


>gi|195024375|ref|XP_001985862.1| GH20856 [Drosophila grimshawi]
 gi|193901862|gb|EDW00729.1| GH20856 [Drosophila grimshawi]
          Length = 1137

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 188/264 (71%), Positives = 228/264 (86%), Gaps = 3/264 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GLVPYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRID+LMYNLVY Q PMV+S+TI +TN
Sbjct: 677  GLVPYPHHNQSPRNTYQCAMGKQAMGMIGYNQKNRIDSLMYNLVYPQAPMVKSRTIELTN 736

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNAT+AVMSYSGYDIEDALI+NKAS+DRG+GRCLVY+NSKC +K+Y NQT DR
Sbjct: 737  FDKLPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKRYANQTFDR 796

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAISMATPE-- 1089
            I+GP+ +A T K +++H  LD DGIVAPGE +  +Q+++NK MP + S++ +   +P+  
Sbjct: 797  IMGPVKDALTNKVIFKHDVLDTDGIVAPGEMVQNKQIMINKEMPAVTSINPLEGQSPQVP 856

Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
            Y  VP+SYKG  PSY+E+V+VS+NSE+ FLIK+LLRQTR PEIGDKFSSRHGQKGV GLI
Sbjct: 857  YTAVPISYKGPEPSYIERVMVSANSEEDFLIKILLRQTRIPEIGDKFSSRHGQKGVTGLI 916

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
            V+QEDMPFN+ GICPD+IMNPHG 
Sbjct: 917  VDQEDMPFNDYGICPDMIMNPHGF 940



 Score =  318 bits (814), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 149/203 (73%), Positives = 172/203 (84%), Gaps = 2/203 (0%)

Query: 1168 MNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDK 1227
            +NP  L+G      Y  VP+SYKG  PSY+E+V+VS+NSE+ FLIK+LLRQTR PEIGDK
Sbjct: 845  INP--LEGQSPQVPYTAVPISYKGPEPSYIERVMVSANSEEDFLIKILLRQTRIPEIGDK 902

Query: 1228 FSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEG 1287
            FSSRHGQKGV GLIV+QEDMPFN+ GICPD+IMNPHG+PSRMTVGK +ELL GKAG++EG
Sbjct: 903  FSSRHGQKGVTGLIVDQEDMPFNDYGICPDMIMNPHGFPSRMTVGKTLELLGGKAGVLEG 962

Query: 1288 NYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMV 1347
             +  GTAFGG+K  DVQ EL+RHG+NY GKD FYSGITG  LEAYIYSGPVYYQKLKHMV
Sbjct: 963  KFHYGTAFGGSKAADVQAELVRHGFNYMGKDFFYSGITGGPLEAYIYSGPVYYQKLKHMV 1022

Query: 1348 QDKIHARSRGPRVVLTRQPTGRR 1370
            QDK+HAR+RGP+ VLTRQPT  R
Sbjct: 1023 QDKMHARARGPKAVLTRQPTQGR 1045



 Score =  254 bits (648), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 130/216 (60%), Positives = 160/216 (74%), Gaps = 4/216 (1%)

Query: 128 LVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFD 187
           L K   D  DY+ N   K+L  A + +    + LF     ++ + IADK IPK+KAAQFD
Sbjct: 353 LDKTLFDDRDYYGN---KRLELAGSLMSLMFEDLFKRMNWELKM-IADKNIPKVKAAQFD 408

Query: 188 IVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEK 247
           +V HMR   IT  L +AI +GNWTI+RFKMER GVTQVLSRLSYIS LGMMTR+NSQFEK
Sbjct: 409 VVKHMRAAQITVGLESAISSGNWTIKRFKMERAGVTQVLSRLSYISALGMMTRVNSQFEK 468

Query: 248 TRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIE 307
           TRKVSGPRSLQ SQWGMLCPSDTPEGEACGLVKNLALMTHITTE DE+ ++ + YN G+E
Sbjct: 469 TRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVDERPVMTLAYNAGVE 528

Query: 308 HIAMFNGEELSSPGVYLVFVNGILAGITCHHKEVCK 343
            I   +G  +++P V+LVF+NG + G+T + K + +
Sbjct: 529 DIREVSGNPMNNPHVFLVFINGNVLGLTINQKHLVR 564



 Score =  194 bits (494), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 94/136 (69%), Positives = 107/136 (78%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G ++FDDFL++G IEYLDVNE NDS IA +E  I P +TTHLEI PFTLLGVCAG     
Sbjct: 624 GIRKFDDFLHDGLIEYLDVNEENDSFIAWNEEHIEP-LTTHLEIEPFTLLGVCAG----- 677

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    LVPYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRID+LMYNLVY Q PMV+
Sbjct: 678 ---------LVPYPHHNQSPRNTYQCAMGKQAMGMIGYNQKNRIDSLMYNLVYPQAPMVK 728

Query: 808 SKTIRITNFHKLPAGK 823
           S+TI +TNF KLPAG+
Sbjct: 729 SRTIELTNFDKLPAGQ 744



 Score =  120 bits (302), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 58/96 (60%), Positives = 76/96 (79%), Gaps = 1/96 (1%)

Query: 439 KLRQKRFQTY-KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPD 497
           KL  KRFQ+   KTP ++AR+ L +T +AH+PV N  F+MKA+Y+++M+RR++ A  D  
Sbjct: 297 KLVVKRFQSATNKTPSEEARELLLTTILAHVPVDNFNFQMKAIYVSLMVRRVMAAELDKT 356

Query: 498 MLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
           + DDRDYYGNKRLELAGSL+SLMFED+FKR N ELK
Sbjct: 357 LFDDRDYYGNKRLELAGSLMSLMFEDLFKRMNWELK 392



 Score =  111 bits (277), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 49/75 (65%), Positives = 63/75 (84%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQ 400
           V KP+I++ FN T+ TTPHECRLRD TYSAPI+VDIEYTRG+QR+ R++L+IGRMP+ML+
Sbjct: 90  VGKPDIDDGFNITKATTPHECRLRDTTYSAPISVDIEYTRGTQRIKRNNLLIGRMPLMLR 149

Query: 401 SSKCVLRNKTEYTSS 415
            S CVL  K+E+  S
Sbjct: 150 CSNCVLTGKSEFELS 164



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/84 (53%), Positives = 60/84 (71%), Gaps = 7/84 (8%)

Query: 99  VTDETSKLKDSPE-------IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQAN 151
           + D T +  DS E       +++KWKLV +FL+ KGLVK HIDSF++FINV+IKK+++AN
Sbjct: 11  MADSTWEPGDSKEWSKSIKPLQEKWKLVPAFLQVKGLVKQHIDSFNHFINVDIKKIVRAN 70

Query: 152 ANIYSDVDPLFYLKYLDIHVGIAD 175
             + S  DPLFYLKYLD+ VG  D
Sbjct: 71  EIVTSGADPLFYLKYLDVRVGKPD 94


>gi|17647877|ref|NP_523706.1| RNA polymerase III 128kD subunit [Drosophila melanogaster]
 gi|78099797|sp|P25167.2|RPC2_DROME RecName: Full=DNA-directed RNA polymerase III subunit RPC2; Short=RNA
            polymerase III subunit C2; AltName: Full=DNA-directed RNA
            polymerase III 128 kDa polypeptide; Short=C128
 gi|7303535|gb|AAF58590.1| RNA polymerase III 128kD subunit [Drosophila melanogaster]
 gi|220943532|gb|ACL84309.1| RpIII128-PA [synthetic construct]
          Length = 1137

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 189/265 (71%), Positives = 225/265 (84%), Gaps = 5/265 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GLVPYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRID+LMYNLVY   PMV+SKTI +TN
Sbjct: 677  GLVPYPHHNQSPRNTYQCAMGKQAMGMIGYNQKNRIDSLMYNLVYPHAPMVKSKTIELTN 736

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNAT+AVMSYSGYDIEDALI+NKAS+DRG+GRCLVY+NSKC +K+Y NQT DR
Sbjct: 737  FDKLPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKRYANQTFDR 796

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTIS----VSAISMATP 1088
            I+GP+ +A T K +++H  LD DGIVAPGEQ+  +Q+++NK MP ++    +   S   P
Sbjct: 797  IMGPMKDALTNKVIFKHDVLDTDGIVAPGEQVQNKQIMINKEMPAVTSMNPLQGQSAQVP 856

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
             Y  VP+SYKG  PSY+E+V+VS+N+E+ FLIK+LLRQTR PEIGDKFSSRHGQKGV GL
Sbjct: 857  -YTAVPISYKGPEPSYIERVMVSANAEEDFLIKILLRQTRIPEIGDKFSSRHGQKGVTGL 915

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            IVEQEDMPFN+ GICPD+IMNPHG 
Sbjct: 916  IVEQEDMPFNDFGICPDMIMNPHGF 940



 Score =  318 bits (816), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 150/203 (73%), Positives = 172/203 (84%), Gaps = 2/203 (0%)

Query: 1168 MNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDK 1227
            MNP  L+G      Y  VP+SYKG  PSY+E+V+VS+N+E+ FLIK+LLRQTR PEIGDK
Sbjct: 845  MNP--LQGQSAQVPYTAVPISYKGPEPSYIERVMVSANAEEDFLIKILLRQTRIPEIGDK 902

Query: 1228 FSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEG 1287
            FSSRHGQKGV GLIVEQEDMPFN+ GICPD+IMNPHG+PSRMTVGK +ELL GKAGL+EG
Sbjct: 903  FSSRHGQKGVTGLIVEQEDMPFNDFGICPDMIMNPHGFPSRMTVGKTLELLGGKAGLLEG 962

Query: 1288 NYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMV 1347
             +  GTAFGG+K+ D+Q EL RHG+NY GKD FYSGITG  LEAYIYSGPVYYQKLKHMV
Sbjct: 963  KFHYGTAFGGSKVEDIQAELERHGFNYVGKDFFYSGITGTPLEAYIYSGPVYYQKLKHMV 1022

Query: 1348 QDKIHARSRGPRVVLTRQPTGRR 1370
            QDK+HAR+RGP+ VLTRQPT  R
Sbjct: 1023 QDKMHARARGPKAVLTRQPTQGR 1045



 Score =  255 bits (651), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 129/216 (59%), Positives = 160/216 (74%), Gaps = 4/216 (1%)

Query: 128 LVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFD 187
           L K   D  DY+ N   K+L  A + +    + LF     ++   IADK IPK+KAAQFD
Sbjct: 353 LDKTLFDDRDYYGN---KRLELAGSLLSMMFEDLFKRMNWELKT-IADKNIPKVKAAQFD 408

Query: 188 IVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEK 247
           +V HMR   IT  L +AI +GNWTI+RFKMER GVTQVLSRLSYIS LGMMTR+NSQFEK
Sbjct: 409 VVKHMRAAQITAGLESAISSGNWTIKRFKMERAGVTQVLSRLSYISALGMMTRVNSQFEK 468

Query: 248 TRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIE 307
           TRKVSGPRSLQ SQWGMLCPSDTPEGEACGLVKNLALMTHITTE +E+ ++ + +N G+E
Sbjct: 469 TRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVEERPVMIVAFNAGVE 528

Query: 308 HIAMFNGEELSSPGVYLVFVNGILAGITCHHKEVCK 343
            I   +G  +++P V+LVF+NG + G+T +HK + +
Sbjct: 529 DIREVSGNPINNPNVFLVFINGNVLGLTLNHKHLVR 564



 Score =  188 bits (477), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 93/136 (68%), Positives = 103/136 (75%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G ++FDDFL +G IEYLDVNE NDS IA +E  I    TTHLEI PFTLLGVCAG     
Sbjct: 624 GIRKFDDFLLDGLIEYLDVNEENDSFIAWNEDQIEDR-TTHLEIEPFTLLGVCAG----- 677

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    LVPYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRID+LMYNLVY   PMV+
Sbjct: 678 ---------LVPYPHHNQSPRNTYQCAMGKQAMGMIGYNQKNRIDSLMYNLVYPHAPMVK 728

Query: 808 SKTIRITNFHKLPAGK 823
           SKTI +TNF KLPAG+
Sbjct: 729 SKTIELTNFDKLPAGQ 744



 Score =  118 bits (296), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 57/96 (59%), Positives = 75/96 (78%), Gaps = 1/96 (1%)

Query: 439 KLRQKRFQTYK-KTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPD 497
           KL  KRFQ+   KTP ++AR+ L +T +AH+PV N   +MKA+Y+++M+RR++ A  D  
Sbjct: 297 KLVVKRFQSATTKTPSEEARELLLTTILAHVPVDNFNLQMKAIYVSMMVRRVMAAELDKT 356

Query: 498 MLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
           + DDRDYYGNKRLELAGSLLS+MFED+FKR N ELK
Sbjct: 357 LFDDRDYYGNKRLELAGSLLSMMFEDLFKRMNWELK 392



 Score =  111 bits (277), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 49/75 (65%), Positives = 62/75 (82%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQ 400
           V KP+I++ FN T+ TTPHECRLRD TYSAPITVDIEYTRG+QR+ R++L+IGRMP+ML+
Sbjct: 90  VGKPDIDDGFNITKATTPHECRLRDTTYSAPITVDIEYTRGTQRIKRNNLLIGRMPLMLR 149

Query: 401 SSKCVLRNKTEYTSS 415
            S C L  K+E+  S
Sbjct: 150 CSNCALTGKSEFELS 164



 Score = 88.2 bits (217), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 40/64 (62%), Positives = 52/64 (81%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           + +KWKLV +FL+ KGLVK HIDSF++FINV+IKK+++AN  + S  DPLFYLKYLD+ V
Sbjct: 31  LTEKWKLVPAFLQVKGLVKQHIDSFNHFINVDIKKIVKANELVTSGADPLFYLKYLDVRV 90

Query: 172 GIAD 175
           G  D
Sbjct: 91  GKPD 94


>gi|195333588|ref|XP_002033472.1| GM21328 [Drosophila sechellia]
 gi|195582601|ref|XP_002081115.1| GD10835 [Drosophila simulans]
 gi|194125442|gb|EDW47485.1| GM21328 [Drosophila sechellia]
 gi|194193124|gb|EDX06700.1| GD10835 [Drosophila simulans]
          Length = 1137

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 189/265 (71%), Positives = 225/265 (84%), Gaps = 5/265 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GLVPYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRID+LMYNLVY   PMV+SKTI +TN
Sbjct: 677  GLVPYPHHNQSPRNTYQCAMGKQAMGMIGYNQKNRIDSLMYNLVYPHAPMVKSKTIELTN 736

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNAT+AVMSYSGYDIEDALI+NKAS+DRG+GRCLVY+NSKC +K+Y NQT DR
Sbjct: 737  FDKLPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKRYANQTFDR 796

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTIS----VSAISMATP 1088
            I+GP+ +A T K +++H  LD DGIVAPGEQ+  +Q+++NK MP ++    +   S   P
Sbjct: 797  IMGPMKDALTNKVIFKHDVLDTDGIVAPGEQVQNKQIMINKEMPAVTSMNPLQGQSAQVP 856

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
             Y  VP+SYKG  PSY+E+V+VS+N+E+ FLIK+LLRQTR PEIGDKFSSRHGQKGV GL
Sbjct: 857  -YTAVPISYKGPEPSYIERVMVSANAEEDFLIKILLRQTRIPEIGDKFSSRHGQKGVTGL 915

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            IVEQEDMPFN+ GICPD+IMNPHG 
Sbjct: 916  IVEQEDMPFNDFGICPDMIMNPHGF 940



 Score =  319 bits (817), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 150/203 (73%), Positives = 172/203 (84%), Gaps = 2/203 (0%)

Query: 1168 MNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDK 1227
            MNP  L+G      Y  VP+SYKG  PSY+E+V+VS+N+E+ FLIK+LLRQTR PEIGDK
Sbjct: 845  MNP--LQGQSAQVPYTAVPISYKGPEPSYIERVMVSANAEEDFLIKILLRQTRIPEIGDK 902

Query: 1228 FSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEG 1287
            FSSRHGQKGV GLIVEQEDMPFN+ GICPD+IMNPHG+PSRMTVGK +ELL GKAGL+EG
Sbjct: 903  FSSRHGQKGVTGLIVEQEDMPFNDFGICPDMIMNPHGFPSRMTVGKTLELLGGKAGLLEG 962

Query: 1288 NYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMV 1347
             +  GTAFGG+K+ D+Q EL RHG+NY GKD FYSGITG  LEAYIYSGPVYYQKLKHMV
Sbjct: 963  KFHYGTAFGGSKVEDIQAELERHGFNYVGKDFFYSGITGSPLEAYIYSGPVYYQKLKHMV 1022

Query: 1348 QDKIHARSRGPRVVLTRQPTGRR 1370
            QDK+HAR+RGP+ VLTRQPT  R
Sbjct: 1023 QDKMHARARGPKAVLTRQPTQGR 1045



 Score =  255 bits (651), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 129/216 (59%), Positives = 160/216 (74%), Gaps = 4/216 (1%)

Query: 128 LVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFD 187
           L K   D  DY+ N   K+L  A + +    + LF     ++   IADK IPK+KAAQFD
Sbjct: 353 LDKTLFDDRDYYGN---KRLELAGSLLSMMFEDLFKRMNWELKT-IADKNIPKVKAAQFD 408

Query: 188 IVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEK 247
           +V HMR   IT  L +AI +GNWTI+RFKMER GVTQVLSRLSYIS LGMMTR+NSQFEK
Sbjct: 409 VVKHMRAAQITAGLESAISSGNWTIKRFKMERAGVTQVLSRLSYISALGMMTRVNSQFEK 468

Query: 248 TRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIE 307
           TRKVSGPRSLQ SQWGMLCPSDTPEGEACGLVKNLALMTHITTE +E+ ++ + +N G+E
Sbjct: 469 TRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVEERPVMIVAFNAGVE 528

Query: 308 HIAMFNGEELSSPGVYLVFVNGILAGITCHHKEVCK 343
            I   +G  +++P V+LVF+NG + G+T +HK + +
Sbjct: 529 DIREVSGNPINNPNVFLVFINGNVLGLTLNHKHLVR 564



 Score =  188 bits (477), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 93/136 (68%), Positives = 103/136 (75%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G ++FDDFL +G IEYLDVNE NDS IA +E  I    TTHLEI PFTLLGVCAG     
Sbjct: 624 GIRKFDDFLLDGLIEYLDVNEENDSFIAWNEDQIEDR-TTHLEIEPFTLLGVCAG----- 677

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    LVPYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRID+LMYNLVY   PMV+
Sbjct: 678 ---------LVPYPHHNQSPRNTYQCAMGKQAMGMIGYNQKNRIDSLMYNLVYPHAPMVK 728

Query: 808 SKTIRITNFHKLPAGK 823
           SKTI +TNF KLPAG+
Sbjct: 729 SKTIELTNFDKLPAGQ 744



 Score =  118 bits (296), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 57/96 (59%), Positives = 75/96 (78%), Gaps = 1/96 (1%)

Query: 439 KLRQKRFQTYK-KTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPD 497
           KL  KRFQ+   KTP ++AR+ L +T +AH+PV N   +MKA+Y+++M+RR++ A  D  
Sbjct: 297 KLVVKRFQSATTKTPSEEARELLLTTILAHVPVDNFNLQMKAIYVSMMVRRVMAAELDKT 356

Query: 498 MLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
           + DDRDYYGNKRLELAGSLLS+MFED+FKR N ELK
Sbjct: 357 LFDDRDYYGNKRLELAGSLLSMMFEDLFKRMNWELK 392



 Score =  111 bits (277), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 49/75 (65%), Positives = 62/75 (82%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQ 400
           V KP+I++ FN T+ TTPHECRLRD TYSAPITVDIEYTRG+QR+ R++L+IGRMP+ML+
Sbjct: 90  VGKPDIDDGFNITKATTPHECRLRDTTYSAPITVDIEYTRGTQRIKRNNLLIGRMPLMLR 149

Query: 401 SSKCVLRNKTEYTSS 415
            S C L  K+E+  S
Sbjct: 150 CSNCALTGKSEFELS 164



 Score = 88.2 bits (217), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 40/64 (62%), Positives = 52/64 (81%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           + +KWKLV +FL+ KGLVK HIDSF++FINV+IKK+++AN  + S  DPLFYLKYLD+ V
Sbjct: 31  LTEKWKLVPAFLQVKGLVKQHIDSFNHFINVDIKKIVKANELVTSGADPLFYLKYLDVRV 90

Query: 172 GIAD 175
           G  D
Sbjct: 91  GKPD 94


>gi|195381659|ref|XP_002049565.1| GJ20682 [Drosophila virilis]
 gi|194144362|gb|EDW60758.1| GJ20682 [Drosophila virilis]
          Length = 1137

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 188/265 (70%), Positives = 226/265 (85%), Gaps = 5/265 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GLVPYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRID+LMYNLVY Q PMV+S+TI +TN
Sbjct: 677  GLVPYPHHNQSPRNTYQCAMGKQAMGMIGYNQKNRIDSLMYNLVYPQAPMVKSRTIELTN 736

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNAT+AVMSYSGYDIEDALI+NKAS+DRG+GRCLVY+NSKC +K+Y NQT DR
Sbjct: 737  FDKLPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKRYANQTFDR 796

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTIS----VSAISMATP 1088
            I+GP+ +A T K +++H  LD DGIVAPGEQ+  +Q+++NK MP ++    +   S   P
Sbjct: 797  IMGPVKDALTNKVIFKHDVLDTDGIVAPGEQVLNKQIMINKEMPAVTSINPLEGQSAQVP 856

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
             Y  VP+SYKG  PSY+E+V+VS+N+E+ FLIK+LLRQTR PEIGDKFSSRHGQKGV GL
Sbjct: 857  -YTAVPISYKGPEPSYIERVMVSANAEEDFLIKILLRQTRIPEIGDKFSSRHGQKGVTGL 915

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            IV+QEDMPFN+ GICPD+IMNPHG 
Sbjct: 916  IVDQEDMPFNDFGICPDMIMNPHGF 940



 Score =  318 bits (816), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 148/203 (72%), Positives = 173/203 (85%), Gaps = 2/203 (0%)

Query: 1168 MNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDK 1227
            +NP  L+G      Y  VP+SYKG  PSY+E+V+VS+N+E+ FLIK+LLRQTR PEIGDK
Sbjct: 845  INP--LEGQSAQVPYTAVPISYKGPEPSYIERVMVSANAEEDFLIKILLRQTRIPEIGDK 902

Query: 1228 FSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEG 1287
            FSSRHGQKGV GLIV+QEDMPFN+ GICPD+IMNPHG+PSRMTVGK +ELL GKAG++EG
Sbjct: 903  FSSRHGQKGVTGLIVDQEDMPFNDFGICPDMIMNPHGFPSRMTVGKTLELLGGKAGVLEG 962

Query: 1288 NYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMV 1347
             +  GTAFGG+K  DVQ EL+RHG+NY GKD+FYSGITG  LEAYIYSGPVYYQKLKHMV
Sbjct: 963  KFHYGTAFGGSKAADVQAELVRHGFNYMGKDLFYSGITGAPLEAYIYSGPVYYQKLKHMV 1022

Query: 1348 QDKIHARSRGPRVVLTRQPTGRR 1370
            QDK+HAR+RGP+ VLTRQPT  R
Sbjct: 1023 QDKMHARARGPKAVLTRQPTQGR 1045



 Score =  256 bits (655), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 131/214 (61%), Positives = 160/214 (74%), Gaps = 4/214 (1%)

Query: 128 LVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFD 187
           L K   D  DY+ N   K+L  A + I    + LF     ++ + IADK IPK+KAAQFD
Sbjct: 353 LDKTLFDDRDYYGN---KRLELAGSLISLMFEDLFKRMNWELKM-IADKNIPKVKAAQFD 408

Query: 188 IVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEK 247
           +V HMR   IT  L +AI +GNWTI+RFKMER GVTQVLSRLSYIS LGMMTR+NSQFEK
Sbjct: 409 VVKHMRAAQITVGLESAISSGNWTIKRFKMERAGVTQVLSRLSYISALGMMTRVNSQFEK 468

Query: 248 TRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIE 307
           TRKVSGPRSLQ SQWGMLCPSDTPEGEACGLVKNLALMTHITTE DE+ ++ + YN G+E
Sbjct: 469 TRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVDERPVMTLAYNAGVE 528

Query: 308 HIAMFNGEELSSPGVYLVFVNGILAGITCHHKEV 341
            I   +G  +++P V+LVF+NG + G+T +H+ +
Sbjct: 529 DIREVSGNPINNPHVFLVFINGNVLGLTINHRHL 562



 Score =  193 bits (490), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 94/136 (69%), Positives = 106/136 (77%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G ++FDDFL++G IEYLDVNE NDS IA +E  I P  TTHLEI PFTLLGVCAG     
Sbjct: 624 GVRKFDDFLHDGLIEYLDVNEENDSFIAWNEEHIEPH-TTHLEIEPFTLLGVCAG----- 677

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    LVPYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRID+LMYNLVY Q PMV+
Sbjct: 678 ---------LVPYPHHNQSPRNTYQCAMGKQAMGMIGYNQKNRIDSLMYNLVYPQAPMVK 728

Query: 808 SKTIRITNFHKLPAGK 823
           S+TI +TNF KLPAG+
Sbjct: 729 SRTIELTNFDKLPAGQ 744



 Score =  121 bits (303), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 58/96 (60%), Positives = 76/96 (79%), Gaps = 1/96 (1%)

Query: 439 KLRQKRFQTY-KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPD 497
           KL  KRFQ+   KTP ++AR+ L +T +AH+PV N  F+MKA+Y+++M+RR++ A  D  
Sbjct: 297 KLVVKRFQSATNKTPSEEARELLLTTILAHVPVDNFNFQMKAIYVSLMVRRVMAAELDKT 356

Query: 498 MLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
           + DDRDYYGNKRLELAGSL+SLMFED+FKR N ELK
Sbjct: 357 LFDDRDYYGNKRLELAGSLISLMFEDLFKRMNWELK 392



 Score =  111 bits (278), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 49/75 (65%), Positives = 63/75 (84%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQ 400
           V KP+I++ FN T+ TTPHECRLRD TYSAPI+VDIEYTRG+QR+ R++L+IGRMP+ML+
Sbjct: 90  VGKPDIDDGFNITKATTPHECRLRDTTYSAPISVDIEYTRGTQRIKRNNLLIGRMPLMLR 149

Query: 401 SSKCVLRNKTEYTSS 415
            S CVL  K+E+  S
Sbjct: 150 CSNCVLTGKSEFELS 164



 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/82 (54%), Positives = 59/82 (71%), Gaps = 7/82 (8%)

Query: 101 DETSKLKDSPE-------IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANAN 153
           D T +  DS E       +++KWKLV +FL+ KGLVK HIDSF++FINV+IKK+++AN  
Sbjct: 13  DNTWEPGDSKEWAKPIKPLQEKWKLVPAFLQVKGLVKQHIDSFNHFINVDIKKIVRANEI 72

Query: 154 IYSDVDPLFYLKYLDIHVGIAD 175
           + S  DPLFYLKYLD+ VG  D
Sbjct: 73  VTSGADPLFYLKYLDVRVGKPD 94


>gi|21464338|gb|AAM51972.1| LD14594p [Drosophila melanogaster]
          Length = 1146

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 189/265 (71%), Positives = 225/265 (84%), Gaps = 5/265 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GLVPYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRID+LMYNLVY   PMV+SKTI +TN
Sbjct: 686  GLVPYPHHNQSPRNTYQCAMGKQAMGMIGYNQKNRIDSLMYNLVYPHAPMVKSKTIELTN 745

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNAT+AVMSYSGYDIEDALI+NKAS+DRG+GRCLVY+NSKC +K+Y NQT DR
Sbjct: 746  FDKLPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKRYANQTFDR 805

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTIS----VSAISMATP 1088
            I+GP+ +A T K +++H  LD DGIVAPGEQ+  +Q+++NK MP ++    +   S   P
Sbjct: 806  IMGPMKDALTNKVIFKHDVLDTDGIVAPGEQVQNKQIMINKEMPAVTSMNPLQGQSAQVP 865

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
             Y  VP+SYKG  PSY+E+V+VS+N+E+ FLIK+LLRQTR PEIGDKFSSRHGQKGV GL
Sbjct: 866  -YTAVPISYKGPEPSYIERVMVSANAEEDFLIKILLRQTRIPEIGDKFSSRHGQKGVTGL 924

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            IVEQEDMPFN+ GICPD+IMNPHG 
Sbjct: 925  IVEQEDMPFNDFGICPDMIMNPHGF 949



 Score =  318 bits (816), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 150/203 (73%), Positives = 172/203 (84%), Gaps = 2/203 (0%)

Query: 1168 MNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDK 1227
            MNP  L+G      Y  VP+SYKG  PSY+E+V+VS+N+E+ FLIK+LLRQTR PEIGDK
Sbjct: 854  MNP--LQGQSAQVPYTAVPISYKGPEPSYIERVMVSANAEEDFLIKILLRQTRIPEIGDK 911

Query: 1228 FSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEG 1287
            FSSRHGQKGV GLIVEQEDMPFN+ GICPD+IMNPHG+PSRMTVGK +ELL GKAGL+EG
Sbjct: 912  FSSRHGQKGVTGLIVEQEDMPFNDFGICPDMIMNPHGFPSRMTVGKTLELLGGKAGLLEG 971

Query: 1288 NYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMV 1347
             +  GTAFGG+K+ D+Q EL RHG+NY GKD FYSGITG  LEAYIYSGPVYYQKLKHMV
Sbjct: 972  KFHYGTAFGGSKVEDIQAELERHGFNYVGKDFFYSGITGTPLEAYIYSGPVYYQKLKHMV 1031

Query: 1348 QDKIHARSRGPRVVLTRQPTGRR 1370
            QDK+HAR+RGP+ VLTRQPT  R
Sbjct: 1032 QDKMHARARGPKAVLTRQPTQGR 1054



 Score =  254 bits (650), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 129/216 (59%), Positives = 160/216 (74%), Gaps = 4/216 (1%)

Query: 128 LVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFD 187
           L K   D  DY+ N   K+L  A + +    + LF     ++   IADK IPK+KAAQFD
Sbjct: 362 LDKTLFDDRDYYGN---KRLELAGSLLSMMFEDLFKRMNWELKT-IADKNIPKVKAAQFD 417

Query: 188 IVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEK 247
           +V HMR   IT  L +AI +GNWTI+RFKMER GVTQVLSRLSYIS LGMMTR+NSQFEK
Sbjct: 418 VVKHMRAAQITAGLESAISSGNWTIKRFKMERAGVTQVLSRLSYISALGMMTRVNSQFEK 477

Query: 248 TRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIE 307
           TRKVSGPRSLQ SQWGMLCPSDTPEGEACGLVKNLALMTHITTE +E+ ++ + +N G+E
Sbjct: 478 TRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVEERPVMIVAFNAGVE 537

Query: 308 HIAMFNGEELSSPGVYLVFVNGILAGITCHHKEVCK 343
            I   +G  +++P V+LVF+NG + G+T +HK + +
Sbjct: 538 DIREVSGNPINNPNVFLVFINGNVLGLTLNHKHLVR 573



 Score =  188 bits (477), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 93/136 (68%), Positives = 103/136 (75%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G ++FDDFL +G IEYLDVNE NDS IA +E  I    TTHLEI PFTLLGVCAG     
Sbjct: 633 GIRKFDDFLLDGLIEYLDVNEENDSFIAWNEDQIEDR-TTHLEIEPFTLLGVCAG----- 686

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    LVPYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRID+LMYNLVY   PMV+
Sbjct: 687 ---------LVPYPHHNQSPRNTYQCAMGKQAMGMIGYNQKNRIDSLMYNLVYPHAPMVK 737

Query: 808 SKTIRITNFHKLPAGK 823
           SKTI +TNF KLPAG+
Sbjct: 738 SKTIELTNFDKLPAGQ 753



 Score =  118 bits (296), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 57/96 (59%), Positives = 75/96 (78%), Gaps = 1/96 (1%)

Query: 439 KLRQKRFQTYK-KTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPD 497
           KL  KRFQ+   KTP ++AR+ L +T +AH+PV N   +MKA+Y+++M+RR++ A  D  
Sbjct: 306 KLVVKRFQSATTKTPSEEARELLLTTILAHVPVDNFNLQMKAIYVSMMVRRVMAAELDKT 365

Query: 498 MLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
           + DDRDYYGNKRLELAGSLLS+MFED+FKR N ELK
Sbjct: 366 LFDDRDYYGNKRLELAGSLLSMMFEDLFKRMNWELK 401



 Score =  111 bits (277), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 49/75 (65%), Positives = 62/75 (82%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQ 400
           V KP+I++ FN T+ TTPHECRLRD TYSAPITVDIEYTRG+QR+ R++L+IGRMP+ML+
Sbjct: 99  VGKPDIDDGFNITKATTPHECRLRDTTYSAPITVDIEYTRGTQRIKRNNLLIGRMPLMLR 158

Query: 401 SSKCVLRNKTEYTSS 415
            S C L  K+E+  S
Sbjct: 159 CSNCALTGKSEFELS 173



 Score = 88.2 bits (217), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 40/64 (62%), Positives = 52/64 (81%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           + +KWKLV +FL+ KGLVK HIDSF++FINV+IKK+++AN  + S  DPLFYLKYLD+ V
Sbjct: 40  LTEKWKLVPAFLQVKGLVKQHIDSFNHFINVDIKKIVKANELVTSGADPLFYLKYLDVRV 99

Query: 172 GIAD 175
           G  D
Sbjct: 100 GKPD 103


>gi|194883820|ref|XP_001975995.1| GG20240 [Drosophila erecta]
 gi|190659182|gb|EDV56395.1| GG20240 [Drosophila erecta]
          Length = 1137

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 189/265 (71%), Positives = 225/265 (84%), Gaps = 5/265 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GLVPYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRID+LMYNLVY   PMV+SKTI +TN
Sbjct: 677  GLVPYPHHNQSPRNTYQCAMGKQAMGMIGYNQKNRIDSLMYNLVYPHAPMVKSKTIELTN 736

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNAT+AVMSYSGYDIEDALI+NKAS+DRG+GRCLVY+NSKC +K+Y NQT DR
Sbjct: 737  FDKLPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKRYANQTFDR 796

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTIS----VSAISMATP 1088
            I+GP+ +A T K +++H  LD DGIVAPGEQ+  +Q+++NK MP ++    +   S   P
Sbjct: 797  IMGPMKDALTNKVIFKHDVLDTDGIVAPGEQVQNKQIMINKEMPAVTSMNPLQGQSAQVP 856

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
             Y  VP+SYKG  PSY+E+V+VS+N+E+ FLIK+LLRQTR PEIGDKFSSRHGQKGV GL
Sbjct: 857  -YTAVPISYKGPEPSYVERVMVSANAEEDFLIKILLRQTRIPEIGDKFSSRHGQKGVTGL 915

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            IVEQEDMPFN+ GICPD+IMNPHG 
Sbjct: 916  IVEQEDMPFNDFGICPDMIMNPHGF 940



 Score =  318 bits (816), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 150/203 (73%), Positives = 172/203 (84%), Gaps = 2/203 (0%)

Query: 1168 MNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDK 1227
            MNP  L+G      Y  VP+SYKG  PSY+E+V+VS+N+E+ FLIK+LLRQTR PEIGDK
Sbjct: 845  MNP--LQGQSAQVPYTAVPISYKGPEPSYVERVMVSANAEEDFLIKILLRQTRIPEIGDK 902

Query: 1228 FSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEG 1287
            FSSRHGQKGV GLIVEQEDMPFN+ GICPD+IMNPHG+PSRMTVGK +ELL GKAGL+EG
Sbjct: 903  FSSRHGQKGVTGLIVEQEDMPFNDFGICPDMIMNPHGFPSRMTVGKTLELLGGKAGLLEG 962

Query: 1288 NYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMV 1347
             +  GTAFGG+K+ D+Q EL RHG+NY GKD FYSGITG  LEAYIYSGPVYYQKLKHMV
Sbjct: 963  KFHYGTAFGGSKVEDIQAELERHGFNYVGKDFFYSGITGAPLEAYIYSGPVYYQKLKHMV 1022

Query: 1348 QDKIHARSRGPRVVLTRQPTGRR 1370
            QDK+HAR+RGP+ VLTRQPT  R
Sbjct: 1023 QDKMHARARGPKAVLTRQPTQGR 1045



 Score =  255 bits (651), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 129/216 (59%), Positives = 160/216 (74%), Gaps = 4/216 (1%)

Query: 128 LVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFD 187
           L K   D  DY+ N   K+L  A + +    + LF     ++   IADK IPK+KAAQFD
Sbjct: 353 LDKTLFDDRDYYGN---KRLELAGSLLSMMFEDLFKRMNWELKT-IADKNIPKVKAAQFD 408

Query: 188 IVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEK 247
           +V HMR   IT  L +AI +GNWTI+RFKMER GVTQVLSRLSYIS LGMMTR+NSQFEK
Sbjct: 409 VVKHMRAAQITAGLESAISSGNWTIKRFKMERAGVTQVLSRLSYISALGMMTRVNSQFEK 468

Query: 248 TRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIE 307
           TRKVSGPRSLQ SQWGMLCPSDTPEGEACGLVKNLALMTHITTE +E+ ++ + +N G+E
Sbjct: 469 TRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVEERPVMIVAFNAGVE 528

Query: 308 HIAMFNGEELSSPGVYLVFVNGILAGITCHHKEVCK 343
            I   +G  +++P V+LVF+NG + G+T +HK + +
Sbjct: 529 DIREVSGNPINNPNVFLVFINGNVLGLTLNHKHLVR 564



 Score =  188 bits (477), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 93/136 (68%), Positives = 103/136 (75%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G ++FDDFL +G IEYLDVNE NDS IA +E  I    TTHLEI PFTLLGVCAG     
Sbjct: 624 GIRKFDDFLLDGLIEYLDVNEENDSFIAWNEDQIEDR-TTHLEIEPFTLLGVCAG----- 677

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    LVPYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRID+LMYNLVY   PMV+
Sbjct: 678 ---------LVPYPHHNQSPRNTYQCAMGKQAMGMIGYNQKNRIDSLMYNLVYPHAPMVK 728

Query: 808 SKTIRITNFHKLPAGK 823
           SKTI +TNF KLPAG+
Sbjct: 729 SKTIELTNFDKLPAGQ 744



 Score =  118 bits (296), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 57/96 (59%), Positives = 75/96 (78%), Gaps = 1/96 (1%)

Query: 439 KLRQKRFQTYK-KTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPD 497
           KL  KRFQ+   KTP ++AR+ L +T +AH+PV N   +MKA+Y+++M+RR++ A  D  
Sbjct: 297 KLVVKRFQSATTKTPSEEARELLLTTILAHVPVDNFNLQMKAIYVSLMVRRVMAAELDKT 356

Query: 498 MLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
           + DDRDYYGNKRLELAGSLLS+MFED+FKR N ELK
Sbjct: 357 LFDDRDYYGNKRLELAGSLLSMMFEDLFKRMNWELK 392



 Score =  112 bits (280), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 50/75 (66%), Positives = 62/75 (82%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQ 400
           V KP+I+E FN T+ TTPHECRLRD TYSAPITVDIEYTRG+QR+ R++L+IGRMP+ML+
Sbjct: 90  VGKPDIDEGFNITKATTPHECRLRDTTYSAPITVDIEYTRGTQRIKRNNLLIGRMPLMLR 149

Query: 401 SSKCVLRNKTEYTSS 415
            S C L  K+E+  S
Sbjct: 150 CSNCALTGKSEFELS 164



 Score = 88.2 bits (217), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 40/64 (62%), Positives = 52/64 (81%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           + +KWKLV +FL+ KGLVK HIDSF++FINV+IKK+++AN  + S  DPLFYLKYLD+ V
Sbjct: 31  LTEKWKLVPAFLQVKGLVKQHIDSFNHFINVDIKKIVKANELVTSGADPLFYLKYLDVRV 90

Query: 172 GIAD 175
           G  D
Sbjct: 91  GKPD 94


>gi|194753345|ref|XP_001958974.1| GF12287 [Drosophila ananassae]
 gi|190620272|gb|EDV35796.1| GF12287 [Drosophila ananassae]
          Length = 1137

 Score =  411 bits (1057), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 188/264 (71%), Positives = 228/264 (86%), Gaps = 3/264 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GLVPYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRID+LMYNLVY Q PMV+SKTI +TN
Sbjct: 677  GLVPYPHHNQSPRNTYQCAMGKQAMGMIGYNQKNRIDSLMYNLVYPQAPMVKSKTIELTN 736

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNAT+AVMSYSGYDIEDALI+NKAS+DRG+GRCLVY+NSKC +K+Y NQT DR
Sbjct: 737  FDKLPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKRYANQTFDR 796

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAISMATPE-- 1089
            I+GP+ +A T K +++H  LD DGIVAPGE +  +Q+++NK MP + S++ +   +P+  
Sbjct: 797  IMGPVKDALTNKVIFKHDVLDTDGIVAPGEMVQNKQIMINKEMPAVTSMNPLDGQSPQVP 856

Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
            Y  VP+SYKG  PSY+E+V+VS+N+E+ FLIK+LLRQTR PEIGDKFSSRHGQKGV GLI
Sbjct: 857  YTAVPISYKGPEPSYIERVMVSANAEEDFLIKILLRQTRIPEIGDKFSSRHGQKGVTGLI 916

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
            VEQEDMP+N+ GICPD+IMNPHG 
Sbjct: 917  VEQEDMPYNDLGICPDMIMNPHGF 940



 Score =  315 bits (807), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 148/203 (72%), Positives = 171/203 (84%), Gaps = 2/203 (0%)

Query: 1168 MNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDK 1227
            MNP  L G      Y  VP+SYKG  PSY+E+V+VS+N+E+ FLIK+LLRQTR PEIGDK
Sbjct: 845  MNP--LDGQSPQVPYTAVPISYKGPEPSYIERVMVSANAEEDFLIKILLRQTRIPEIGDK 902

Query: 1228 FSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEG 1287
            FSSRHGQKGV GLIVEQEDMP+N+ GICPD+IMNPHG+PSRMTVGK +ELL GKAG++EG
Sbjct: 903  FSSRHGQKGVTGLIVEQEDMPYNDLGICPDMIMNPHGFPSRMTVGKTLELLGGKAGVLEG 962

Query: 1288 NYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMV 1347
             +  GTAFGG+K+ D+Q EL RHG+NY GKD FYSGITG  LEAYIYSGPVYYQKLKHMV
Sbjct: 963  KFHYGTAFGGSKVQDIQAELERHGFNYMGKDFFYSGITGAPLEAYIYSGPVYYQKLKHMV 1022

Query: 1348 QDKIHARSRGPRVVLTRQPTGRR 1370
            QDK+HAR+RGP+ VLTRQPT  R
Sbjct: 1023 QDKMHARARGPKAVLTRQPTQGR 1045



 Score =  256 bits (653), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 131/216 (60%), Positives = 160/216 (74%), Gaps = 4/216 (1%)

Query: 128 LVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFD 187
           L K   D  DY+ N   K+L  A + I    + LF     ++   IADK IPK+KAAQFD
Sbjct: 353 LDKTLFDDRDYYGN---KRLELAGSLISLMFEDLFKRMNWELKT-IADKNIPKVKAAQFD 408

Query: 188 IVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEK 247
           +V HMR   IT  L +AI +GNWTI+RFKMER GVTQVLSRLSYIS LGMMTR+NSQFEK
Sbjct: 409 VVKHMRAAQITAGLESAISSGNWTIKRFKMERAGVTQVLSRLSYISALGMMTRVNSQFEK 468

Query: 248 TRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIE 307
           TRKVSGPRSLQ SQWGMLCPSDTPEGEACGLVKNLALMTHITTE +EK ++ + +N G+E
Sbjct: 469 TRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVEEKPVMVLAFNAGVE 528

Query: 308 HIAMFNGEELSSPGVYLVFVNGILAGITCHHKEVCK 343
            I   +G  +++P V+LVF+NG + G+T +H+ + K
Sbjct: 529 DIREVSGNPINNPNVFLVFINGNVLGLTLNHRHLVK 564



 Score =  189 bits (481), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 94/136 (69%), Positives = 104/136 (76%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G ++FDDFL +G IEYLDVNE NDS IA +E  I    TTHLEI PFTLLGVCAG     
Sbjct: 624 GIRKFDDFLLDGLIEYLDVNEENDSFIAWNEEHIEER-TTHLEIEPFTLLGVCAG----- 677

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    LVPYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRID+LMYNLVY Q PMV+
Sbjct: 678 ---------LVPYPHHNQSPRNTYQCAMGKQAMGMIGYNQKNRIDSLMYNLVYPQAPMVK 728

Query: 808 SKTIRITNFHKLPAGK 823
           SKTI +TNF KLPAG+
Sbjct: 729 SKTIELTNFDKLPAGQ 744



 Score =  121 bits (303), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 58/96 (60%), Positives = 76/96 (79%), Gaps = 1/96 (1%)

Query: 439 KLRQKRFQTYK-KTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPD 497
           KL  KRFQ+   KTP ++AR+ L +T +AH+PV N  F+MKA+Y+++M+RR++ A  D  
Sbjct: 297 KLVVKRFQSATTKTPAEEARELLLTTILAHVPVDNFNFQMKAIYVSMMVRRVMAAELDKT 356

Query: 498 MLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
           + DDRDYYGNKRLELAGSL+SLMFED+FKR N ELK
Sbjct: 357 LFDDRDYYGNKRLELAGSLISLMFEDLFKRMNWELK 392



 Score =  114 bits (284), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 51/75 (68%), Positives = 63/75 (84%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQ 400
           V KP+I+E FN T+ TTPHECRLRD TYSAPITVDIEYTRG+QR+ R++L+IGRMP+ML+
Sbjct: 90  VGKPDIDEGFNITKATTPHECRLRDTTYSAPITVDIEYTRGTQRIKRNNLLIGRMPLMLR 149

Query: 401 SSKCVLRNKTEYTSS 415
            S CVL  K+E+  S
Sbjct: 150 CSNCVLTGKSEFELS 164



 Score = 87.8 bits (216), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 39/64 (60%), Positives = 53/64 (82%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           +++KWKL+ +FL+ KGLVK HIDSF++FINV+IKK+++AN  + S  DPLFYLKYLD+ V
Sbjct: 31  LQEKWKLLPAFLQVKGLVKQHIDSFNHFINVDIKKIVRANEMVTSGADPLFYLKYLDVRV 90

Query: 172 GIAD 175
           G  D
Sbjct: 91  GKPD 94


>gi|195123595|ref|XP_002006289.1| GI20961 [Drosophila mojavensis]
 gi|193911357|gb|EDW10224.1| GI20961 [Drosophila mojavensis]
          Length = 1136

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 187/263 (71%), Positives = 227/263 (86%), Gaps = 2/263 (0%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GLVPYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRID+LMYNLVY Q PMV+S+TI +TN
Sbjct: 677  GLVPYPHHNQSPRNTYQCAMGKQAMGMIGYNQKNRIDSLMYNLVYPQAPMVKSRTIELTN 736

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNAT+AVMSYSGYDIEDALI+NKAS+DRG+GRCLVY+NSKC +K+Y NQT DR
Sbjct: 737  FDKLPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKRYANQTFDR 796

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAIS-MATPEY 1090
            I+GP+ +A T K +++H  LD DGIVAPGEQ+  +Q+++NK MP + S++ +   +   Y
Sbjct: 797  IMGPVKDALTNKVIFKHDVLDTDGIVAPGEQVQNKQIMINKEMPAVTSINPLEGQSQVPY 856

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
              VP+SYKG  PSY+E+V+VS+N+E+ FLIK+LLRQTR PEIGDKFSSRHGQKGV GLIV
Sbjct: 857  TAVPISYKGPEPSYIERVMVSANAEEDFLIKILLRQTRIPEIGDKFSSRHGQKGVTGLIV 916

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
            +QEDMPFN+ GICPD+IMNPHG 
Sbjct: 917  DQEDMPFNDFGICPDMIMNPHGF 939



 Score =  316 bits (810), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 144/189 (76%), Positives = 166/189 (87%)

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
            Y  VP+SYKG  PSY+E+V+VS+N+E+ FLIK+LLRQTR PEIGDKFSSRHGQKGV GLI
Sbjct: 856  YTAVPISYKGPEPSYIERVMVSANAEEDFLIKILLRQTRIPEIGDKFSSRHGQKGVTGLI 915

Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
            V+QEDMPFN+ GICPD+IMNPHG+PSRMTVGK +ELL GKAG++EG +  GTAFGG+K  
Sbjct: 916  VDQEDMPFNDFGICPDMIMNPHGFPSRMTVGKTLELLGGKAGVLEGKFHYGTAFGGSKAA 975

Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
            DVQ EL+RHG+NY GKD FYSGITG  LEAYIYSGPVYYQKLKHMVQDK+HAR+RGP+ V
Sbjct: 976  DVQAELVRHGFNYMGKDFFYSGITGAPLEAYIYSGPVYYQKLKHMVQDKMHARARGPKAV 1035

Query: 1362 LTRQPTGRR 1370
            LTRQPT  R
Sbjct: 1036 LTRQPTQGR 1044



 Score =  254 bits (650), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 130/216 (60%), Positives = 160/216 (74%), Gaps = 4/216 (1%)

Query: 128 LVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFD 187
           L K   D  DY+ N   K+L  A + I    + LF     ++ + IADK IPK+KAAQFD
Sbjct: 353 LDKTLFDDRDYYGN---KRLELAGSLISLMFEDLFKRMNWELKM-IADKNIPKVKAAQFD 408

Query: 188 IVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEK 247
           +V HMR   IT  L +AI +GNWTI+RFKMER GVTQVLSRLSYIS LGMMTR+NSQFEK
Sbjct: 409 VVKHMRAAQITAGLESAISSGNWTIKRFKMERAGVTQVLSRLSYISALGMMTRVNSQFEK 468

Query: 248 TRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIE 307
           TRKVSGPRSLQ SQWGMLCPSDTPEGEACGLVKNLALMTHITTE DE+ ++ + YN G+E
Sbjct: 469 TRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVDERPVMTLAYNAGVE 528

Query: 308 HIAMFNGEELSSPGVYLVFVNGILAGITCHHKEVCK 343
            I   +G  +++P V+LVF+NG + G+T + + + +
Sbjct: 529 DIREVSGNPINNPHVFLVFINGNVLGLTINQRHLVR 564



 Score =  192 bits (488), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 93/136 (68%), Positives = 106/136 (77%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G ++FDDFL++G IEYLDVNE NDS IA +E  + P  TTHLEI PFTLLGVCAG     
Sbjct: 624 GVRKFDDFLHDGLIEYLDVNEENDSFIAWNEEQLEPH-TTHLEIEPFTLLGVCAG----- 677

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    LVPYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRID+LMYNLVY Q PMV+
Sbjct: 678 ---------LVPYPHHNQSPRNTYQCAMGKQAMGMIGYNQKNRIDSLMYNLVYPQAPMVK 728

Query: 808 SKTIRITNFHKLPAGK 823
           S+TI +TNF KLPAG+
Sbjct: 729 SRTIELTNFDKLPAGQ 744



 Score =  120 bits (302), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 58/96 (60%), Positives = 76/96 (79%), Gaps = 1/96 (1%)

Query: 439 KLRQKRFQTYK-KTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPD 497
           KL  KRFQ+   KTP ++AR+ L +T +AH+PV N  F+MKA+Y+++M+RR++ A  D  
Sbjct: 297 KLVVKRFQSATTKTPSEEARELLLTTILAHVPVDNFNFQMKAIYVSLMVRRVMAAELDKT 356

Query: 498 MLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
           + DDRDYYGNKRLELAGSL+SLMFED+FKR N ELK
Sbjct: 357 LFDDRDYYGNKRLELAGSLISLMFEDLFKRMNWELK 392



 Score =  111 bits (278), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 49/75 (65%), Positives = 63/75 (84%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQ 400
           V KP+I++ FN T+ TTPHECRLRD TYSAPI+VDIEYTRG+QR+ R++L+IGRMP+ML+
Sbjct: 90  VGKPDIDDGFNITKATTPHECRLRDTTYSAPISVDIEYTRGTQRIKRNNLLIGRMPLMLR 149

Query: 401 SSKCVLRNKTEYTSS 415
            S CVL  K+E+  S
Sbjct: 150 CSNCVLTGKSEFELS 164



 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/64 (62%), Positives = 53/64 (82%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           +++KWKLV +FL+ KGLVK HIDSF++FINV+IKK+++AN  + S  DPLFYLKYLD+ V
Sbjct: 31  LQEKWKLVPAFLQVKGLVKQHIDSFNHFINVDIKKIVRANEIVTSGADPLFYLKYLDVRV 90

Query: 172 GIAD 175
           G  D
Sbjct: 91  GKPD 94


>gi|443693201|gb|ELT94631.1| hypothetical protein CAPTEDRAFT_178602 [Capitella teleta]
          Length = 1134

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 183/265 (69%), Positives = 227/265 (85%), Gaps = 5/265 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRID+LMY L Y Q PMV++KTI +  
Sbjct: 667  GLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDSLMYLLCYPQAPMVKTKTIDLIG 726

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F K+PAGQNAT+AVMSYSGYDIEDALI+NKASLDRGFGRCLVYRN+K  LK+Y NQT D+
Sbjct: 727  FDKIPAGQNATVAVMSYSGYDIEDALILNKASLDRGFGRCLVYRNAKVALKRYANQTFDK 786

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMA-----T 1087
            ++GP+++A+T+K ++RH  LD DGI +PGE++  +Q+LVNK MPT++++ +  +      
Sbjct: 787  VMGPMIDAETKKQIWRHDILDMDGICSPGEKVENKQLLVNKYMPTVTINPLQSSGGQPQQ 846

Query: 1088 PEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
            PEY++VP+ YKG +PSY+EKV++SSN E+AF+IK+LLRQTRRPEIGDKFSSRHGQKGV G
Sbjct: 847  PEYRDVPLGYKGPMPSYIEKVMISSNEEEAFIIKILLRQTRRPEIGDKFSSRHGQKGVCG 906

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHG 1172
            LIV Q DMPF+  GICPDIIMNPHG
Sbjct: 907  LIVPQADMPFSNLGICPDIIMNPHG 931



 Score =  300 bits (768), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 140/208 (67%), Positives = 169/208 (81%), Gaps = 1/208 (0%)

Query: 1164 PDIIMNP-HGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRP 1222
            P + +NP     G  +  EY++VP+ YKG +PSY+EKV++SSN E+AF+IK+LLRQTRRP
Sbjct: 830  PTVTINPLQSSGGQPQQPEYRDVPLGYKGPMPSYIEKVMISSNEEEAFIIKILLRQTRRP 889

Query: 1223 EIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKA 1282
            EIGDKFSSRHGQKGV GLIV Q DMPF+  GICPDIIMNPHGYPSRMTVGKLIEL+  KA
Sbjct: 890  EIGDKFSSRHGQKGVCGLIVPQADMPFSNLGICPDIIMNPHGYPSRMTVGKLIELMGSKA 949

Query: 1283 GLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQK 1342
            G++EG +  GTAFGG K+ D+ E L++HG+NY GKD   SGITGE L AYI+ GP++YQK
Sbjct: 950  GVLEGKFHYGTAFGGDKVSDLSEVLVKHGFNYLGKDFVTSGITGEPLSAYIFFGPIFYQK 1009

Query: 1343 LKHMVQDKIHARSRGPRVVLTRQPTGRR 1370
            LKHMV DK+HAR++GPR VLTRQPT  R
Sbjct: 1010 LKHMVIDKMHARAKGPRAVLTRQPTEGR 1037



 Score =  250 bits (638), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 122/212 (57%), Positives = 160/212 (75%), Gaps = 4/212 (1%)

Query: 132 HIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVNH 191
           ++D  DY  N  ++   Q  + ++ D+    + K+      IAD  IPK +AAQFDIV H
Sbjct: 347 NVDDRDYVGNKRLELAGQLLSLLFEDL----FKKFNSELKRIADMTIPKPRAAQFDIVKH 402

Query: 192 MRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKV 251
           MRQD ITN LT AI +GNW+I+RFKM+RQGVTQVLSRLS+IS LG MTRI SQFEKTRKV
Sbjct: 403 MRQDQITNGLTHAISSGNWSIKRFKMDRQGVTQVLSRLSFISALGHMTRITSQFEKTRKV 462

Query: 252 SGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAM 311
           SGPRSLQ SQWGMLCPSDTPEGEACGLVKNLALMTH+TT+  E++++++ +N+G+E I  
Sbjct: 463 SGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHVTTDLPEESIIRLAHNLGVEDIHF 522

Query: 312 FNGEELSSPGVYLVFVNGILAGITCHHKEVCK 343
            +G+EL+SP +YLV +NG + G+   ++ + +
Sbjct: 523 LSGDELTSPLIYLVLLNGNILGVIREYRRLVR 554



 Score =  172 bits (435), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 85/136 (62%), Positives = 99/136 (72%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G + F+DFL EG +EYLDVNE ND  IA+ ES I    TTHLEI PFT+LGVCAG     
Sbjct: 614 GVRCFEDFLQEGLVEYLDVNEENDCFIALYESEIHKE-TTHLEIEPFTILGVCAG----- 667

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRID+LMY L Y Q PMV+
Sbjct: 668 ---------LIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDSLMYLLCYPQAPMVK 718

Query: 808 SKTIRITNFHKLPAGK 823
           +KTI +  F K+PAG+
Sbjct: 719 TKTIDLIGFDKIPAGQ 734



 Score =  114 bits (284), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 56/97 (57%), Positives = 72/97 (74%), Gaps = 2/97 (2%)

Query: 439 KLRQKRFQT--YKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDP 496
           K+RQ+R      KK+  ++AR+ L  T IAH+PV N  FK+KA Y A+M+RR +LA  + 
Sbjct: 286 KVRQRRIWGGGAKKSKAEEARELLQGTIIAHVPVTNWNFKVKASYTALMLRRCILAQGNT 345

Query: 497 DMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
             +DDRDY GNKRLELAG LLSL+FED+FK+FNSELK
Sbjct: 346 MNVDDRDYVGNKRLELAGQLLSLLFEDLFKKFNSELK 382



 Score =  110 bits (275), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 50/70 (71%), Positives = 59/70 (84%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQ 400
           V  P++EE FN T+  +PHECRLRD+TYSAPITVDIEYTRGSQR+VR++L IGRMPIML+
Sbjct: 78  VGMPDVEEGFNITKPISPHECRLRDMTYSAPITVDIEYTRGSQRIVRNNLPIGRMPIMLR 137

Query: 401 SSKCVLRNKT 410
           SS CVL  K 
Sbjct: 138 SSNCVLVGKV 147



 Score = 90.1 bits (222), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 41/64 (64%), Positives = 52/64 (81%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           I +KW+L+ +FLK KGLVK HIDSF+YFINVEIK +M+AN  I SD D  FY+KYL+I+V
Sbjct: 19  IEEKWQLLPAFLKVKGLVKQHIDSFNYFINVEIKNIMKANNKITSDADQNFYMKYLNIYV 78

Query: 172 GIAD 175
           G+ D
Sbjct: 79  GMPD 82


>gi|345498326|ref|XP_001607116.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Nasonia
            vitripennis]
          Length = 1135

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 186/264 (70%), Positives = 224/264 (84%), Gaps = 3/264 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GLVPYPHHNQ+PRNTYQCAMGKQAMG I YNQ+NRIDTLMYNLVY   PMV++KTI + N
Sbjct: 673  GLVPYPHHNQSPRNTYQCAMGKQAMGTIAYNQRNRIDTLMYNLVYPHAPMVKTKTIELIN 732

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNA +AVMSYSGYDIEDALI+NKAS+DRG+GRCLVY+N+KCVLK+Y NQT DR
Sbjct: 733  FDKLPAGQNAIVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNAKCVLKKYANQTCDR 792

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTIS---VSAISMATPE 1089
            I+   ++A T+KP+++H  +D +GI APGE +  ++V+VNKS P+ +   V+  S A  E
Sbjct: 793  IMPASVDATTKKPIWQHDIIDGEGIAAPGEMVSNKKVMVNKSTPSANTGPVTTGSQAQTE 852

Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
            YK   + YK  VP+Y+EKV++SSN+EDA+LIK+LLRQTRRPEIGDKFSSRHGQKGV GLI
Sbjct: 853  YKNANLVYKNPVPAYIEKVMISSNAEDAYLIKLLLRQTRRPEIGDKFSSRHGQKGVTGLI 912

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
            VEQEDMPFN+SGICPD+IMNPHG 
Sbjct: 913  VEQEDMPFNDSGICPDMIMNPHGF 936



 Score =  327 bits (839), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 153/198 (77%), Positives = 174/198 (87%)

Query: 1175 GCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQ 1234
            G    TEYK   + YK  VP+Y+EKV++SSN+EDA+LIK+LLRQTRRPEIGDKFSSRHGQ
Sbjct: 846  GSQAQTEYKNANLVYKNPVPAYIEKVMISSNAEDAYLIKLLLRQTRRPEIGDKFSSRHGQ 905

Query: 1235 KGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTA 1294
            KGV GLIVEQEDMPFN+SGICPD+IMNPHG+PSRMTVGKLIELLAGKAG+++G +  GTA
Sbjct: 906  KGVTGLIVEQEDMPFNDSGICPDMIMNPHGFPSRMTVGKLIELLAGKAGVLKGKFHYGTA 965

Query: 1295 FGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHAR 1354
            FGG+K+ DV EEL+  GYNY GKDIFYSGITGE L+AYIYSGPVYYQKLKHMVQDK+HAR
Sbjct: 966  FGGSKVEDVCEELVSQGYNYLGKDIFYSGITGEPLQAYIYSGPVYYQKLKHMVQDKMHAR 1025

Query: 1355 SRGPRVVLTRQPTGRRWK 1372
            +RGPR VLTRQPT  R K
Sbjct: 1026 ARGPRAVLTRQPTEGRSK 1043



 Score =  261 bits (667), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 129/203 (63%), Positives = 158/203 (77%), Gaps = 4/203 (1%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVNHM 192
           +D  DY+ N   K+L  A + +    + LF     D+   IADK IPKIKAAQFDIV HM
Sbjct: 354 VDDRDYYGN---KRLELAGSLLALMFEDLFKRFNWDLKT-IADKNIPKIKAAQFDIVKHM 409

Query: 193 RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVS 252
           R D+ITN L  AI +GNWTI+RFKMER GVTQVLSRLSYIS LGMMTR+NSQFEKTRKVS
Sbjct: 410 RHDSITNGLAVAISSGNWTIKRFKMERHGVTQVLSRLSYISALGMMTRVNSQFEKTRKVS 469

Query: 253 GPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMF 312
           GPRSLQ SQWGMLCPSDTPEGE CGLVKNLALMTHITTE +E+ ++++ +N+G+E++ + 
Sbjct: 470 GPRSLQPSQWGMLCPSDTPEGEGCGLVKNLALMTHITTEIEEEPIMRLAFNLGVENVNIL 529

Query: 313 NGEELSSPGVYLVFVNGILAGIT 335
            GEE+++  VY+VF+NG + GI 
Sbjct: 530 GGEEINNKDVYMVFLNGNILGIV 552



 Score =  189 bits (480), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 93/139 (66%), Positives = 105/139 (75%), Gaps = 15/139 (10%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G + F+DFL++G IEYLDVNE NDS IA SES I+ G+T HLEI PFTLLGVCAG     
Sbjct: 620 GVRSFEDFLHDGTIEYLDVNEENDSFIAFSESHIKEGIT-HLEIEPFTLLGVCAG----- 673

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    LVPYPHHNQ+PRNTYQCAMGKQAMG I YNQ+NRIDTLMYNLVY   PMV+
Sbjct: 674 ---------LVPYPHHNQSPRNTYQCAMGKQAMGTIAYNQRNRIDTLMYNLVYPHAPMVK 724

Query: 808 SKTIRITNFHKLPAGKCQI 826
           +KTI + NF KLPAG+  I
Sbjct: 725 TKTIELINFDKLPAGQNAI 743



 Score =  125 bits (314), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 55/95 (57%), Positives = 77/95 (81%)

Query: 439 KLRQKRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDM 498
           K +QKRF   K +  D+ +D L+S  ++H+PVI+  FK+KA YLA+M+R++++A +D  +
Sbjct: 294 KRKQKRFTVVKSSITDEMKDVLASNILSHVPVIDFNFKLKATYLALMVRKVMIAQTDGKL 353

Query: 499 LDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
           +DDRDYYGNKRLELAGSLL+LMFED+FKRFN +LK
Sbjct: 354 VDDRDYYGNKRLELAGSLLALMFEDLFKRFNWDLK 388



 Score =  108 bits (270), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 56/112 (50%), Positives = 74/112 (66%), Gaps = 12/112 (10%)

Query: 303 NIGIEHIAMFNGEELSS--PGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHE 360
           N+ I+ I   N + LS   P  Y+ ++N            +  P+IEE F+ +R TTPHE
Sbjct: 56  NVEIKKIVKANEKVLSDADPLFYVKYLN----------VSIGTPDIEEGFSVSRPTTPHE 105

Query: 361 CRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKTEY 412
           CRLRDL YSAPITVDIEY RG Q ++R++L+IGRMPIML+SS CVL  K+ +
Sbjct: 106 CRLRDLNYSAPITVDIEYMRGHQPIIRNNLLIGRMPIMLRSSNCVLSEKSNF 157



 Score = 94.0 bits (232), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 41/64 (64%), Positives = 53/64 (82%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           I +KWKLV +FL+ KGLVK HIDSF+YFINVEIKK+++AN  + SD DPLFY+KYL++ +
Sbjct: 27  IENKWKLVPAFLQGKGLVKQHIDSFNYFINVEIKKIVKANEKVLSDADPLFYVKYLNVSI 86

Query: 172 GIAD 175
           G  D
Sbjct: 87  GTPD 90


>gi|332017159|gb|EGI57958.1| DNA-directed RNA polymerase III subunit RPC2 [Acromyrmex echinatior]
          Length = 1113

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 181/268 (67%), Positives = 222/268 (82%), Gaps = 7/268 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDT+MYNLVY Q P+V+++ I + N
Sbjct: 647  GLIPYPHHNQSPRNTYQCAMGKQAMGIIGYNQRNRIDTVMYNLVYPQTPIVKTRAIELIN 706

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAG+NA +AVMSYSGYDIEDALI NKAS+DRG+GRCLVYRN+KC+LK+Y N+T D 
Sbjct: 707  YDKLPAGENAIVAVMSYSGYDIEDALIFNKASIDRGYGRCLVYRNAKCILKKYANRTQDT 766

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPT-------ISVSAISM 1085
            I+GP+L+ +T+KP+ +H  LD DGIV PGE +  + V+VNKS+PT       +S   I  
Sbjct: 767  IMGPMLDGNTKKPITKHEVLDVDGIVLPGEMVENKTVMVNKSVPTPSENIGPVSSGTIQT 826

Query: 1086 ATPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV 1145
               EY+   + +KG VP+Y+EKV+V+SN++D FL K+LLRQTRRPEIGDKFSSRHGQKGV
Sbjct: 827  QAVEYRNAEIPFKGMVPAYVEKVIVTSNADDCFLTKLLLRQTRRPEIGDKFSSRHGQKGV 886

Query: 1146 IGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            IGLIVEQEDMPFN+ GICPDIIMNPHG 
Sbjct: 887  IGLIVEQEDMPFNDHGICPDIIMNPHGF 914



 Score =  315 bits (807), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 156/266 (58%), Positives = 198/266 (74%), Gaps = 12/266 (4%)

Query: 1111 SSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI-----VEQEDMPFNESGICPD 1165
            ++ ++D  +  ML   T++P       ++H    V G++     VE + +  N+S   P 
Sbjct: 760  ANRTQDTIMGPMLDGNTKKP------ITKHEVLDVDGIVLPGEMVENKTVMVNKSVPTPS 813

Query: 1166 IIMNPHGLKGCD-RITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEI 1224
              + P        +  EY+   + +KG VP+Y+EKV+V+SN++D FL K+LLRQTRRPEI
Sbjct: 814  ENIGPVSSGTIQTQAVEYRNAEIPFKGMVPAYVEKVIVTSNADDCFLTKLLLRQTRRPEI 873

Query: 1225 GDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGL 1284
            GDKFSSRHGQKGVIGLIVEQEDMPFN+ GICPDIIMNPHG+PSRMTVGKLIELLAGKAG+
Sbjct: 874  GDKFSSRHGQKGVIGLIVEQEDMPFNDHGICPDIIMNPHGFPSRMTVGKLIELLAGKAGV 933

Query: 1285 MEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLK 1344
            + G + + TAFGG K+ D++EEL ++GYNY GKD FY+G+TG+ L  YIYSGPVYYQKLK
Sbjct: 934  VNGKFHDATAFGGAKVEDIREELAKNGYNYLGKDFFYNGMTGKPLIGYIYSGPVYYQKLK 993

Query: 1345 HMVQDKIHARSRGPRVVLTRQPTGRR 1370
            HMVQDK+HAR+RGPRVVLTRQPT  R
Sbjct: 994  HMVQDKMHARARGPRVVLTRQPTEGR 1019



 Score =  259 bits (663), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 130/211 (61%), Positives = 158/211 (74%), Gaps = 4/211 (1%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVNHM 192
           ID  DY+ N  ++      A ++ D+   F  +   I    A+K IPK KAA FDIVNHM
Sbjct: 328 IDDKDYYGNKRLELAGSLLALMFEDLFKRFNWELKKI----ANKNIPKTKAAAFDIVNHM 383

Query: 193 RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVS 252
           R D ITN L  AI +GNWTI+RF+MER GVTQVLSRLSYIS LGMMTR++SQFEKTRKVS
Sbjct: 384 RHDLITNGLVFAISSGNWTIKRFRMERHGVTQVLSRLSYISALGMMTRVHSQFEKTRKVS 443

Query: 253 GPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMF 312
           GPRSLQGSQWGMLCP+DTPEGEACGLVKNLALM HITTE  E+ ++K++ N+G+E+I   
Sbjct: 444 GPRSLQGSQWGMLCPNDTPEGEACGLVKNLALMAHITTEVPEELIIKLVLNLGVENIYTL 503

Query: 313 NGEELSSPGVYLVFVNGILAGITCHHKEVCK 343
            GEEL+S  +Y VFVNGI+ GI  +HK + +
Sbjct: 504 AGEELTSEDIYSVFVNGIMVGIVQNHKRLVR 534



 Score =  179 bits (453), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 87/135 (64%), Positives = 102/135 (75%), Gaps = 15/135 (11%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKR 751
           F+DFLY+G IEYLDVNE NDS IA +ES I    TTHLEIA FT+LGVCAG         
Sbjct: 598 FEDFLYDGLIEYLDVNEENDSLIACTESEINEN-TTHLEIAEFTILGVCAG--------- 647

Query: 752 FHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTI 811
                L+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDT+MYNLVY Q P+V+++ I
Sbjct: 648 -----LIPYPHHNQSPRNTYQCAMGKQAMGIIGYNQRNRIDTVMYNLVYPQTPIVKTRAI 702

Query: 812 RITNFHKLPAGKCQI 826
            + N+ KLPAG+  I
Sbjct: 703 ELINYDKLPAGENAI 717



 Score =  120 bits (301), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 54/96 (56%), Positives = 75/96 (78%)

Query: 439 KLRQKRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDM 498
           K +Q RF   K    D+ +D L++  ++H+PV++  F+ KA+YLA+MIRR++ A SD  +
Sbjct: 268 KRKQMRFHVPKSHVTDEMKDVLATNILSHVPVVDFNFRPKALYLALMIRRVINAQSDHSL 327

Query: 499 LDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELKE 534
           +DD+DYYGNKRLELAGSLL+LMFED+FKRFN ELK+
Sbjct: 328 IDDKDYYGNKRLELAGSLLALMFEDLFKRFNWELKK 363



 Score = 96.3 bits (238), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/95 (52%), Positives = 64/95 (67%), Gaps = 12/95 (12%)

Query: 319 SPGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQ--TTPHECRLRDLTYSAPITVDI 376
            P  YL ++N I  G+         PE++ES N  R   TTPHECRLRDL YSA I VD+
Sbjct: 46  DPHFYLKYLN-IKVGL---------PEVQESSNSIRTIPTTPHECRLRDLNYSASIIVDV 95

Query: 377 EYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKTE 411
           EY R +QR++R ++VIG+MPIML+SS CVL  K+E
Sbjct: 96  EYIRSNQRIIRHNMVIGKMPIMLRSSNCVLTKKSE 130



 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/62 (61%), Positives = 49/62 (79%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGI 173
           DKWKLV +FL+ KGLV  HIDS++YFIN EIK +++AN  + SD DP FYLKYL+I VG+
Sbjct: 1   DKWKLVAAFLRNKGLVNQHIDSYNYFINEEIKNIVKANEKVQSDEDPHFYLKYLNIKVGL 60

Query: 174 AD 175
            +
Sbjct: 61  PE 62


>gi|403182564|gb|EJY57481.1| AAEL017156-PA [Aedes aegypti]
          Length = 1134

 Score =  404 bits (1037), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 182/267 (68%), Positives = 224/267 (83%), Gaps = 6/267 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GLVPYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMYN+VY Q PMV S+TI +TN
Sbjct: 671  GLVPYPHHNQSPRNTYQCAMGKQAMGIIGYNQKNRIDTLMYNIVYPQTPMVRSRTIELTN 730

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNAT+AVMSYSGYDIEDALI+NKAS+DRG+GRCLVY+NSKC +K+Y NQT DR
Sbjct: 731  FDKLPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTIKRYSNQTFDR 790

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAISMATP--- 1088
            I+GP+ ++ T K +++H  LD DGI++PGE++  +Q +VNK MP + S + I        
Sbjct: 791  IMGPMKDSLTNKIIFKHECLDTDGIISPGEKVLSKQTMVNKEMPAVKSTNPIEQKEAGQQ 850

Query: 1089 --EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVI 1146
               Y  VP++YKG+ PSY+EKV+VS+N+E+ FL+K+LLRQTRRPEIGDKFSSRHGQKGV 
Sbjct: 851  PITYSPVPITYKGTEPSYIEKVMVSTNNEEEFLVKILLRQTRRPEIGDKFSSRHGQKGVT 910

Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGL 1173
            GLIVEQED+PFN+ G+ PD++MNPHG 
Sbjct: 911  GLIVEQEDLPFNDFGMSPDMVMNPHGF 937



 Score =  307 bits (786), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 138/189 (73%), Positives = 167/189 (88%)

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
            Y  VP++YKG+ PSY+EKV+VS+N+E+ FL+K+LLRQTRRPEIGDKFSSRHGQKGV GLI
Sbjct: 854  YSPVPITYKGTEPSYIEKVMVSTNNEEEFLVKILLRQTRRPEIGDKFSSRHGQKGVTGLI 913

Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
            VEQED+PFN+ G+ PD++MNPHG+PSRMTVGK +ELL  KAG++EG +  GTAFGG+K  
Sbjct: 914  VEQEDLPFNDFGMSPDMVMNPHGFPSRMTVGKTLELLGSKAGVLEGKFHYGTAFGGSKCQ 973

Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
            D+Q+EL ++G+N+ GKDIFYSGITGE LE YIYSGPVYYQKLKHMVQDK+HAR+RGPR V
Sbjct: 974  DLQDELFKNGFNFLGKDIFYSGITGEPLEMYIYSGPVYYQKLKHMVQDKMHARARGPRAV 1033

Query: 1362 LTRQPTGRR 1370
            LTRQPT  R
Sbjct: 1034 LTRQPTQGR 1042



 Score =  259 bits (662), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 130/214 (60%), Positives = 161/214 (75%), Gaps = 4/214 (1%)

Query: 130 KPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIV 189
           K  +D  DY+ N   K+L  A + +    + LF     ++ + IADK IPKIKAAQFD+V
Sbjct: 348 KSAVDDRDYYGN---KRLELAGSLLSLMFEDLFKRFNWELKM-IADKNIPKIKAAQFDVV 403

Query: 190 NHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
            HMR   I+  L  AI TGNWTI+RFKMER GVTQVLSRLSYIS LGMMTR+NSQFEKTR
Sbjct: 404 KHMRAALISTGLETAISTGNWTIKRFKMERAGVTQVLSRLSYISALGMMTRVNSQFEKTR 463

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHI 309
           KVSGPRSLQ SQWGMLCPSDTPEGEACGLVKNLALMTHITTE DE+ ++++ YN G+E I
Sbjct: 464 KVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVDEEPVIRLAYNSGVEDI 523

Query: 310 AMFNGEELSSPGVYLVFVNGILAGITCHHKEVCK 343
            +  GE +++P V++VF+NG + G+T  +K + +
Sbjct: 524 RLLGGETINNPKVFMVFINGNILGVTIGYKRLVE 557



 Score =  197 bits (501), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 93/137 (67%), Positives = 105/137 (76%), Gaps = 14/137 (10%)

Query: 687 LGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELL 746
           +G ++FDDFL++G IEYLDVNE NDS IA  E  I P  TTHLE+ PFTLLGVCAG    
Sbjct: 616 IGLRKFDDFLHDGLIEYLDVNEENDSFIAYQEVDIDPEKTTHLEVEPFTLLGVCAG---- 671

Query: 747 QYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMV 806
                     LVPYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMYN+VY Q PMV
Sbjct: 672 ----------LVPYPHHNQSPRNTYQCAMGKQAMGIIGYNQKNRIDTLMYNIVYPQTPMV 721

Query: 807 ESKTIRITNFHKLPAGK 823
            S+TI +TNF KLPAG+
Sbjct: 722 RSRTIELTNFDKLPAGQ 738



 Score =  122 bits (307), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 63/115 (54%), Positives = 80/115 (69%), Gaps = 12/115 (10%)

Query: 303 NIGIEHIAMFNGEELSS--PGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHE 360
           N+ I++I   N E  S   P  YL ++N            +  P++EE FN T+ TTPHE
Sbjct: 51  NVDIKNIVRANDEVKSDADPCFYLKYLN----------VSIGMPDVEEGFNNTKSTTPHE 100

Query: 361 CRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKTEYTSS 415
           CRLRD+TY+APITVDIEYTRG+QRVVR++L+IGRMPIML+SS CVL  K+EY  S
Sbjct: 101 CRLRDMTYAAPITVDIEYTRGTQRVVRNNLLIGRMPIMLRSSNCVLTGKSEYELS 155



 Score =  119 bits (297), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 60/98 (61%), Positives = 74/98 (75%), Gaps = 3/98 (3%)

Query: 439 KLRQKRFQTYKKTPV---DDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSD 495
           KL  KRF T         D+ARD L++T +AH+PV N  F++KA+Y+A+MIRR++ A  D
Sbjct: 288 KLIAKRFTTAATKYKTTADEARDLLATTILAHVPVPNFNFQVKAIYVALMIRRVMAAEVD 347

Query: 496 PDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
              +DDRDYYGNKRLELAGSLLSLMFED+FKRFN ELK
Sbjct: 348 KSAVDDRDYYGNKRLELAGSLLSLMFEDLFKRFNWELK 385



 Score = 90.9 bits (224), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 39/64 (60%), Positives = 52/64 (81%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           + DKWKLV +FL+ KGLVK HIDSF+YFINV+IK +++AN  + SD DP FYLKYL++ +
Sbjct: 22  LEDKWKLVPAFLQIKGLVKQHIDSFNYFINVDIKNIVRANDEVKSDADPCFYLKYLNVSI 81

Query: 172 GIAD 175
           G+ D
Sbjct: 82  GMPD 85


>gi|10963|emb|CAA41631.1| DNA-directed RNA polymerase [Drosophila melanogaster]
          Length = 1135

 Score =  402 bits (1032), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 186/265 (70%), Positives = 221/265 (83%), Gaps = 6/265 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GLVPYPHHNQ+PRNTYQCAMGKQAMG IGYN  NRID+LMYNLVY   PMV+SKTI +TN
Sbjct: 676  GLVPYPHHNQSPRNTYQCAMGKQAMGMIGYNHNNRIDSLMYNLVYPHAPMVKSKTIELTN 735

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNAT+AVMSYSGYDIEDALI+NKAS+DRG+GRCLVY+NSKC +K+Y NQT DR
Sbjct: 736  FDKLPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKRYANQTFDR 795

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTIS----VSAISMATP 1088
            I+GP+ +A T K +++H  LD DGIVAPGEQ+  +Q+++NK MP ++    +   S   P
Sbjct: 796  IMGPMKDALTNKVIFKHDVLDTDGIVAPGEQVQNKQIMINKEMPAVTSMNPLQGQSAQVP 855

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
             Y  VP+SYKG  PSY+E+V+VS+N+E+ FLIK+LLRQTR P  GDKFSSRHGQKGV GL
Sbjct: 856  -YTAVPISYKGPEPSYIERVMVSANAEEDFLIKILLRQTRIPR-GDKFSSRHGQKGVTGL 913

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            IVEQEDMPFN+ GICPD+IMNPHG 
Sbjct: 914  IVEQEDMPFNDFGICPDMIMNPHGF 938



 Score =  310 bits (795), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 148/203 (72%), Positives = 170/203 (83%), Gaps = 3/203 (1%)

Query: 1168 MNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDK 1227
            MNP  L+G      Y  VP+SYKG  PSY+E+V+VS+N+E+ FLIK+LLRQTR P  GDK
Sbjct: 844  MNP--LQGQSAQVPYTAVPISYKGPEPSYIERVMVSANAEEDFLIKILLRQTRIPR-GDK 900

Query: 1228 FSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEG 1287
            FSSRHGQKGV GLIVEQEDMPFN+ GICPD+IMNPHG+PSRMTVGK +ELL GKAGL+EG
Sbjct: 901  FSSRHGQKGVTGLIVEQEDMPFNDFGICPDMIMNPHGFPSRMTVGKTLELLGGKAGLLEG 960

Query: 1288 NYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMV 1347
             +  GTAFGG+K+ D+Q EL RHG+NY GKD FYSGITG  LEAYIYSGPVYYQKLKHMV
Sbjct: 961  KFHYGTAFGGSKVEDIQAELERHGFNYVGKDFFYSGITGTPLEAYIYSGPVYYQKLKHMV 1020

Query: 1348 QDKIHARSRGPRVVLTRQPTGRR 1370
            QDK+HAR+RGP+ VLTRQPT  R
Sbjct: 1021 QDKMHARARGPKAVLTRQPTQGR 1043



 Score =  251 bits (641), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 128/216 (59%), Positives = 159/216 (73%), Gaps = 4/216 (1%)

Query: 128 LVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFD 187
           L K   D  DY+ N   K+L  A + +    + LF     ++   IADK IPK+KAAQFD
Sbjct: 352 LDKTLFDDRDYYGN---KRLELAGSLLSMMFEDLFKRMNWELKT-IADKNIPKVKAAQFD 407

Query: 188 IVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEK 247
           +V HMR   IT  L +AI +GNWTI+RFKMER GVTQVLSRLSYIS LGMMTR+NSQFEK
Sbjct: 408 VVKHMRAAQITAGLESAISSGNWTIKRFKMERAGVTQVLSRLSYISALGMMTRVNSQFEK 467

Query: 248 TRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIE 307
           TRKVSGPRSLQ SQWGMLCPS TPEGEACGLVKNLALMTHITTE +E+ ++ + +N G+E
Sbjct: 468 TRKVSGPRSLQPSQWGMLCPSYTPEGEACGLVKNLALMTHITTEVEERPVMIVAFNAGVE 527

Query: 308 HIAMFNGEELSSPGVYLVFVNGILAGITCHHKEVCK 343
            I   +G  +++P V+LVF+NG + G+T +HK + +
Sbjct: 528 DIREVSGNPINNPNVFLVFINGNVLGLTLNHKHLVR 563



 Score =  182 bits (463), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 91/136 (66%), Positives = 100/136 (73%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G ++FDDFL +G IEYLDVNE NDS IA +E  I    TTHLEI  FTLLGVCAG     
Sbjct: 623 GIRKFDDFLLDGLIEYLDVNEENDSFIAWNEDQIEDR-TTHLEIETFTLLGVCAG----- 676

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    LVPYPHHNQ+PRNTYQCAMGKQAMG IGYN  NRID+LMYNLVY   PMV+
Sbjct: 677 ---------LVPYPHHNQSPRNTYQCAMGKQAMGMIGYNHNNRIDSLMYNLVYPHAPMVK 727

Query: 808 SKTIRITNFHKLPAGK 823
           SKTI +TNF KLPAG+
Sbjct: 728 SKTIELTNFDKLPAGQ 743



 Score =  118 bits (296), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 57/96 (59%), Positives = 75/96 (78%), Gaps = 1/96 (1%)

Query: 439 KLRQKRFQTYK-KTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPD 497
           KL  KRFQ+   KTP ++AR+ L +T +AH+PV N   +MKA+Y+++M+RR++ A  D  
Sbjct: 296 KLVVKRFQSATTKTPSEEARELLLTTILAHVPVDNFNLQMKAIYVSMMVRRVMAAELDKT 355

Query: 498 MLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
           + DDRDYYGNKRLELAGSLLS+MFED+FKR N ELK
Sbjct: 356 LFDDRDYYGNKRLELAGSLLSMMFEDLFKRMNWELK 391



 Score =  107 bits (267), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 49/75 (65%), Positives = 63/75 (84%), Gaps = 1/75 (1%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQ 400
           V KP+I++ FN T+ TTPHECRLRD TYSAPITVDIEYTRG+QR+ R++L+IGRMP+ML+
Sbjct: 90  VGKPDIDDGFNITKATTPHECRLRDTTYSAPITVDIEYTRGTQRIKRNNLLIGRMPLMLR 149

Query: 401 SSKCVLRNKTEYTSS 415
           S+ C L  K+E+  S
Sbjct: 150 SN-CALTGKSEFELS 163



 Score = 88.2 bits (217), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 40/64 (62%), Positives = 52/64 (81%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           + +KWKLV +FL+ KGLVK HIDSF++FINV+IKK+++AN  + S  DPLFYLKYLD+ V
Sbjct: 31  LTEKWKLVPAFLQVKGLVKQHIDSFNHFINVDIKKIVKANELVTSGADPLFYLKYLDVRV 90

Query: 172 GIAD 175
           G  D
Sbjct: 91  GKPD 94


>gi|322784943|gb|EFZ11714.1| hypothetical protein SINV_06174 [Solenopsis invicta]
          Length = 1123

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 180/267 (67%), Positives = 220/267 (82%), Gaps = 6/267 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G IG NQ+ RIDT+MYNL Y+QRP+V+++ I + N
Sbjct: 658  GLIPYPHHNQSPRNTYQCAMGKQAIGSIGENQRTRIDTVMYNLAYSQRPIVKTRAIELIN 717

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAG+NA +AVMSYSGYDIEDALI NKAS+DRG+GRCLVYRN+KC LK+Y NQT DR
Sbjct: 718  YDKLPAGENAIVAVMSYSGYDIEDALIFNKASIDRGYGRCLVYRNAKCTLKKYANQTQDR 777

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISV------SAISMA 1086
            I+GP ++A+T+KP+ +H  LD DGI APGE +  + V+VNKS+P  S       S     
Sbjct: 778  IMGPSIDANTKKPLSKHEILDSDGIAAPGELVENKTVMVNKSVPAPSENIGPVRSGNVQT 837

Query: 1087 TPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVI 1146
              EY+   + YKG VP+Y+EKV++S N+EDAFL+K+LLRQTRRPEIGDKFSSRHGQKGVI
Sbjct: 838  QTEYRNAEIQYKGLVPAYVEKVMISKNAEDAFLVKLLLRQTRRPEIGDKFSSRHGQKGVI 897

Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGL 1173
            GLIVEQEDMPFN+ G+CPDIIMNPHG 
Sbjct: 898  GLIVEQEDMPFNDYGMCPDIIMNPHGF 924



 Score =  320 bits (820), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 151/226 (66%), Positives = 182/226 (80%)

Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNS 1206
            G +VE + +  N+S   P   + P         TEY+   + YKG VP+Y+EKV++S N+
Sbjct: 806  GELVENKTVMVNKSVPAPSENIGPVRSGNVQTQTEYRNAEIQYKGLVPAYVEKVMISKNA 865

Query: 1207 EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYP 1266
            EDAFL+K+LLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFN+ G+CPDIIMNPHG+P
Sbjct: 866  EDAFLVKLLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNDYGMCPDIIMNPHGFP 925

Query: 1267 SRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITG 1326
            SRMTVGKLIE+LAGKAG++ G +++ TAFGG K+ D+ EEL ++GYNY GKD FY+G+TG
Sbjct: 926  SRMTVGKLIEVLAGKAGVVNGKFQDATAFGGAKVEDLCEELAKNGYNYLGKDFFYNGMTG 985

Query: 1327 EALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
              L  YIYSGPVYYQKLKHMVQDKIHAR+RGPRVVLTRQPT  R +
Sbjct: 986  RPLIGYIYSGPVYYQKLKHMVQDKIHARARGPRVVLTRQPTEGRAR 1031



 Score =  266 bits (679), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 134/211 (63%), Positives = 156/211 (73%), Gaps = 4/211 (1%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVNHM 192
           ID  DY+ N  ++      A ++ D+   F  +   I    ADK IPKIKAA FDI  HM
Sbjct: 339 IDDKDYYGNKRLELAGSLLALMFEDLFKRFNWELKQI----ADKNIPKIKAAAFDIAKHM 394

Query: 193 RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVS 252
           R D ITN L  AI +GNWTI+RF+MER GVTQVLSRLSYIS LGMMTR++SQFEKTRKVS
Sbjct: 395 RHDLITNGLAFAISSGNWTIKRFRMERHGVTQVLSRLSYISALGMMTRVHSQFEKTRKVS 454

Query: 253 GPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMF 312
           GPRSLQGSQWGMLCP+DTPEGEACGLVKNLALM HITTE  EK ++ +M N+G+E I   
Sbjct: 455 GPRSLQGSQWGMLCPNDTPEGEACGLVKNLALMAHITTEVPEKPLIDLMRNLGVEDIYTL 514

Query: 313 NGEELSSPGVYLVFVNGILAGITCHHKEVCK 343
            GEEL+  GVY VFVNGI+AGI  +HK + K
Sbjct: 515 AGEELTKEGVYTVFVNGIMAGIVQNHKRLVK 545



 Score =  171 bits (433), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 83/135 (61%), Positives = 100/135 (74%), Gaps = 15/135 (11%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKR 751
           F+DFLY+G IEYLDVNE NDS IA +ES I    TTHLEIA F +LGVCAG         
Sbjct: 609 FEDFLYDGLIEYLDVNEENDSLIACTESEINED-TTHLEIAEFAILGVCAG--------- 658

Query: 752 FHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTI 811
                L+PYPHHNQ+PRNTYQCAMGKQA+G IG NQ+ RIDT+MYNL Y+QRP+V+++ I
Sbjct: 659 -----LIPYPHHNQSPRNTYQCAMGKQAIGSIGENQRTRIDTVMYNLAYSQRPIVKTRAI 713

Query: 812 RITNFHKLPAGKCQI 826
            + N+ KLPAG+  I
Sbjct: 714 ELINYDKLPAGENAI 728



 Score =  121 bits (304), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 57/124 (45%), Positives = 84/124 (67%)

Query: 411 EYTSSSRRASTSSVTMHSQRTSPLLSCKKLRQKRFQTYKKTPVDDARDFLSSTCIAHIPV 470
           ++ +S        + + SQ  +      K +Q RF   K    D+ +D +++  ++H+PV
Sbjct: 251 KFAASLEECQREDLNIFSQNQALKYLNSKRKQTRFHVPKSRVADEMKDAIATNILSHVPV 310

Query: 471 INMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNS 530
           I+  F+ KA+YLA+MIRR++ A SD  ++DD+DYYGNKRLELAGSLL+LMFED+FKRFN 
Sbjct: 311 IDFNFRPKALYLALMIRRVINAQSDRSLIDDKDYYGNKRLELAGSLLALMFEDLFKRFNW 370

Query: 531 ELKE 534
           ELK+
Sbjct: 371 ELKQ 374



 Score = 88.6 bits (218), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/60 (66%), Positives = 50/60 (83%)

Query: 113 RDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           +DKWKLV +FL++KGLVK HIDS++YFIN EIK +++AN  I SD DP FYLKYL+I VG
Sbjct: 1   QDKWKLVKAFLQDKGLVKQHIDSYNYFINEEIKNIVKANEKIQSDEDPHFYLKYLNIQVG 60



 Score = 78.6 bits (192), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/83 (51%), Positives = 54/83 (65%), Gaps = 12/83 (14%)

Query: 340 EVCKPEIEESFNYTRQ--TTPHECRLRDLTYSAPITVDIEYTR---------GSQRVVRS 388
           +V +P++++S    R   TTPHECRLRDL YSAPI V+IEY R         G QR  + 
Sbjct: 58  QVGRPKLQDSCTLNRDYDTTPHECRLRDLNYSAPIEVEIEYVRNNPDNKEGGGKQRTWKK 117

Query: 389 DLVIGRMPIMLQSSKCVLRNKTE 411
            +VIG MPIML+SS CVL  K+E
Sbjct: 118 -VVIGMMPIMLRSSNCVLTKKSE 139


>gi|312374784|gb|EFR22267.1| hypothetical protein AND_15508 [Anopheles darlingi]
          Length = 1134

 Score =  398 bits (1023), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 183/267 (68%), Positives = 222/267 (83%), Gaps = 6/267 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GLVPYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMYN+VY Q PMV S+TI +TN
Sbjct: 671  GLVPYPHHNQSPRNTYQCAMGKQAMGIIGYNQKNRIDTLMYNIVYPQTPMVRSRTIELTN 730

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNAT+AVMSYSGYDIEDALI+NKAS+DRG+GRCLVY+NSKC +K+Y NQT DR
Sbjct: 731  FDKLPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTIKRYSNQTFDR 790

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAISMATP--- 1088
            I+GP+ ++ T K + RH  LD DGIV+PGE++  +Q +VNK MP + S + I        
Sbjct: 791  IMGPMKDSLTGKVIARHECLDTDGIVSPGERLVCKQTMVNKEMPAVKSNNPIEQKESGQQ 850

Query: 1089 --EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVI 1146
               Y  VP++YKG+ PSY E+VLVS+N+E+ FL+K+LLRQTRRPEIGDKFSSRHGQKGV 
Sbjct: 851  PIAYSAVPITYKGTEPSYAERVLVSTNNEEEFLVKILLRQTRRPEIGDKFSSRHGQKGVT 910

Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGL 1173
            GLIV+QED+PFN+ G+ PD++MNPHG 
Sbjct: 911  GLIVDQEDLPFNDYGMAPDMVMNPHGF 937



 Score =  306 bits (783), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 137/189 (72%), Positives = 166/189 (87%)

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
            Y  VP++YKG+ PSY E+VLVS+N+E+ FL+K+LLRQTRRPEIGDKFSSRHGQKGV GLI
Sbjct: 854  YSAVPITYKGTEPSYAERVLVSTNNEEEFLVKILLRQTRRPEIGDKFSSRHGQKGVTGLI 913

Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
            V+QED+PFN+ G+ PD++MNPHG+PSRMTVGK +ELL  KAG++EG +  GTAFGG+K  
Sbjct: 914  VDQEDLPFNDYGMAPDMVMNPHGFPSRMTVGKTLELLGSKAGVLEGKFHYGTAFGGSKCQ 973

Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
            D+Q+EL ++G+NY GKD+FYSGITGE LE YIYSGPVYYQKLKHMVQDK+HAR+RGPR V
Sbjct: 974  DLQDELFQNGFNYLGKDVFYSGITGEPLEVYIYSGPVYYQKLKHMVQDKMHARARGPRAV 1033

Query: 1362 LTRQPTGRR 1370
            LTRQPT  R
Sbjct: 1034 LTRQPTQGR 1042



 Score =  257 bits (656), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 127/217 (58%), Positives = 162/217 (74%), Gaps = 6/217 (2%)

Query: 128 LVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG-IADKIIPKIKAAQF 186
           L +  +D  DY+ N  ++      + ++ D+     LK  +  +  IADK IPKIKAAQF
Sbjct: 346 LDRSAVDDRDYYGNKRLELAGSLLSLMFEDL-----LKRFNWELKMIADKNIPKIKAAQF 400

Query: 187 DIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFE 246
           D+  HMR+  IT+ L  AI TGNWTI+RFKMER GVTQVLSRLSYIS LGMMTR+NSQFE
Sbjct: 401 DVGKHMREALITSGLETAISTGNWTIKRFKMERAGVTQVLSRLSYISALGMMTRVNSQFE 460

Query: 247 KTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGI 306
           KTRKVSGPRSLQ SQWGMLCPSDTPEGEACGLVKNLALMTHITTE DE+ ++++ YN G+
Sbjct: 461 KTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVDEEPVIRLAYNAGV 520

Query: 307 EHIAMFNGEELSSPGVYLVFVNGILAGITCHHKEVCK 343
           E I +  GE +++P V++VF+NG + G+T  ++ + +
Sbjct: 521 EDIRLIGGETINNPKVFMVFINGNILGVTIAYRRLVE 557



 Score =  199 bits (506), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 95/137 (69%), Positives = 105/137 (76%), Gaps = 14/137 (10%)

Query: 687 LGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELL 746
           LG ++FDDFL++G IEYLDVNE NDS IA  E  I P  TTHLEI PFTLLGVCAG    
Sbjct: 616 LGLRKFDDFLHDGLIEYLDVNEENDSFIAYQERDIDPEKTTHLEIEPFTLLGVCAG---- 671

Query: 747 QYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMV 806
                     LVPYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMYN+VY Q PMV
Sbjct: 672 ----------LVPYPHHNQSPRNTYQCAMGKQAMGIIGYNQKNRIDTLMYNIVYPQTPMV 721

Query: 807 ESKTIRITNFHKLPAGK 823
            S+TI +TNF KLPAG+
Sbjct: 722 RSRTIELTNFDKLPAGQ 738



 Score =  123 bits (308), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 63/115 (54%), Positives = 79/115 (68%), Gaps = 12/115 (10%)

Query: 303 NIGIEHIAMFNGEELSS--PGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHE 360
           N+ I+ I   N E  S   P  YL ++N            V KP++EE FN T+ TTPHE
Sbjct: 51  NVDIKKIVQANQEVKSDADPCFYLKYLN----------VHVGKPDVEEGFNNTKSTTPHE 100

Query: 361 CRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKTEYTSS 415
           CRLRD+TYSAPITVD+EYTRG+QRVVR+ L+IGRMPIML+SS C+L  K++Y  S
Sbjct: 101 CRLRDMTYSAPITVDVEYTRGTQRVVRNGLLIGRMPIMLRSSNCILNGKSDYELS 155



 Score =  119 bits (297), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 59/98 (60%), Positives = 75/98 (76%), Gaps = 3/98 (3%)

Query: 439 KLRQKRFQTYK---KTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSD 495
           KL  KRF T     +T  D+ARD L++T +AH+PV +  F++KA+Y+A+MIRR++ A  D
Sbjct: 288 KLIAKRFTTAATKYRTTADEARDLLATTILAHVPVRSFNFQVKAIYVALMIRRVMAAELD 347

Query: 496 PDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
              +DDRDYYGNKRLELAGSLLSLMFED+ KRFN ELK
Sbjct: 348 RSAVDDRDYYGNKRLELAGSLLSLMFEDLLKRFNWELK 385



 Score = 95.9 bits (237), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 46/85 (54%), Positives = 60/85 (70%), Gaps = 7/85 (8%)

Query: 98  MVTDETSKLKDSP-------EIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQA 150
           M  DE +  +DS         + +KWKLV +FL+ KGLVK HID+F+YFINV+IKK++QA
Sbjct: 1   MFADEKAWSEDSKGYKKVKRALEEKWKLVPAFLQVKGLVKQHIDAFNYFINVDIKKIVQA 60

Query: 151 NANIYSDVDPLFYLKYLDIHVGIAD 175
           N  + SD DP FYLKYL++HVG  D
Sbjct: 61  NQEVKSDADPCFYLKYLNVHVGKPD 85


>gi|324502244|gb|ADY40989.1| DNA-directed RNA polymerase III subunit RPC2 [Ascaris suum]
          Length = 1135

 Score =  398 bits (1023), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 182/271 (67%), Positives = 224/271 (82%), Gaps = 11/271 (4%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQQ RID+LMY LVY QRP+V+SKTI + N
Sbjct: 665  GLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQQKRIDSLMYLLVYPQRPLVKSKTIEMCN 724

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNA IAVMSYSGYDIEDAL++NKASLDRG+GRCLVY+++K   K+YPNQT DR
Sbjct: 725  FEKLPAGQNAIIAVMSYSGYDIEDALVLNKASLDRGYGRCLVYKHAKGTAKKYPNQTFDR 784

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATP---- 1088
            ++GP +EA TRKP+Y+H+ LDQ+GIV  G +I  +QV++NK MP +S+ A ++A      
Sbjct: 785  LMGPTIEATTRKPIYKHQVLDQEGIVFAGARIRSKQVMINKHMPIVSLEASAVAQSSGVV 844

Query: 1089 -------EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1141
                   EYK+V +SY+  VPSY E+VL++ N +DA LIK++LRQTRRPE+GDKFSSRHG
Sbjct: 845  QAGNRNVEYKDVSISYRSPVPSYAERVLLTYNEDDAHLIKVVLRQTRRPELGDKFSSRHG 904

Query: 1142 QKGVIGLIVEQEDMPFNESGICPDIIMNPHG 1172
            QKGV GLI +QEDMPFN+ G+CPD+IMNPHG
Sbjct: 905  QKGVCGLIAQQEDMPFNDLGMCPDMIMNPHG 935



 Score =  287 bits (735), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 132/200 (66%), Positives = 162/200 (81%)

Query: 1173 LKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRH 1232
            ++  +R  EYK+V +SY+  VPSY E+VL++ N +DA LIK++LRQTRRPE+GDKFSSRH
Sbjct: 844  VQAGNRNVEYKDVSISYRSPVPSYAERVLLTYNEDDAHLIKVVLRQTRRPELGDKFSSRH 903

Query: 1233 GQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEG 1292
            GQKGV GLI +QEDMPFN+ G+CPD+IMNPHGYPSRMTVGKL+ELL+GK  ++ G +  G
Sbjct: 904  GQKGVCGLIAQQEDMPFNDLGMCPDMIMNPHGYPSRMTVGKLMELLSGKNAILSGRFHYG 963

Query: 1293 TAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIH 1352
            TAF G ++ DV EEL   G+NY GKD+  SGITG+ L AYIY GP+YYQKLKHMV DK+H
Sbjct: 964  TAFAGDQVADVCEELAARGFNYLGKDMLTSGITGQQLSAYIYFGPIYYQKLKHMVLDKMH 1023

Query: 1353 ARSRGPRVVLTRQPTGRRWK 1372
            ARSRGPR VLTRQPT  R +
Sbjct: 1024 ARSRGPRAVLTRQPTEGRAR 1043



 Score =  233 bits (593), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 110/163 (67%), Positives = 132/163 (80%)

Query: 173 IADKIIPKIKAAQFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYI 232
           IAD  + K  AA  DIV HMRQD +TNA+  AI TGNW I+RF+MER GVTQVLSRLSYI
Sbjct: 382 IADNSLGKTLAAPLDIVKHMRQDLVTNAMVNAIATGNWIIKRFRMERHGVTQVLSRLSYI 441

Query: 233 SGLGMMTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTEN 292
           S LGMMTRINS FEKTRKVSGPRSLQ SQWGMLCPSDTPEGE+CGLVKNLAL++HITT++
Sbjct: 442 SVLGMMTRINSTFEKTRKVSGPRSLQPSQWGMLCPSDTPEGESCGLVKNLALISHITTDS 501

Query: 293 DEKNMLKIMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAGIT 335
           DEK +++++YN G+E +   +   + SP  +LVF+NG + GIT
Sbjct: 502 DEKPVIRLLYNSGVEDLQSLHFSLVHSPEYHLVFLNGAIVGIT 544



 Score =  184 bits (466), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 99/172 (57%), Positives = 117/172 (68%), Gaps = 21/172 (12%)

Query: 656 GARNSQQYCDCPDGYSSGCQPRPTFLNMHQFL-GFKRFDDFLYEGKIEYLDVNEGNDSHI 714
           G R  + Y    DG     +PR T  ++ +   G + F+DF+ EG IEYLDVNE ND+ I
Sbjct: 584 GGRLCRPYIIVTDG-----KPRITQHDIDELKKGHRIFEDFVDEGLIEYLDVNEMNDASI 638

Query: 715 AVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCA 774
           AV E+ I+   TTHLEI PFTLLGVCAG              L+PYPHHNQ+PRNTYQCA
Sbjct: 639 AVYENQIKAD-TTHLEIEPFTLLGVCAG--------------LIPYPHHNQSPRNTYQCA 683

Query: 775 MGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
           MGKQAMG IGYNQQ RID+LMY LVY QRP+V+SKTI + NF KLPAG+  I
Sbjct: 684 MGKQAMGTIGYNQQKRIDSLMYLLVYPQRPLVKSKTIEMCNFEKLPAGQNAI 735



 Score =  100 bits (250), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 52/110 (47%), Positives = 72/110 (65%), Gaps = 4/110 (3%)

Query: 428 SQRTSPLLSCKKLRQKRFQTYKKTPV----DDARDFLSSTCIAHIPVINMRFKMKAMYLA 483
           +Q ++      K++ ++F T    P      +A DFL+S  I HIP  +   K+KA+Y+ 
Sbjct: 271 TQESALQFIASKVKMRKFGTGGSGPTPPKEHEAIDFLTSLMICHIPSHDGNMKLKAIYVG 330

Query: 484 VMIRRMVLALSDPDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
           +M+RR++ A       DDRD+YGNKRLELAGSL+ L+FEDVFKRFNSELK
Sbjct: 331 LMVRRLMQAEMGYTECDDRDFYGNKRLELAGSLMGLLFEDVFKRFNSELK 380



 Score = 97.8 bits (242), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 46/72 (63%), Positives = 56/72 (77%), Gaps = 1/72 (1%)

Query: 341 VCKPEIEESFN-YTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIML 399
           V  P  EE F     + +PHECRLRD+TYSAPI VDIEYTRG+QRV+R+ +VIGRMPIML
Sbjct: 73  VGTPSSEEGFTQLNEKISPHECRLRDMTYSAPIQVDIEYTRGNQRVLRNGIVIGRMPIML 132

Query: 400 QSSKCVLRNKTE 411
           + SKCVL++  E
Sbjct: 133 RCSKCVLKDMNE 144



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/72 (56%), Positives = 55/72 (76%), Gaps = 3/72 (4%)

Query: 101 DETSKLKDSPEIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDP 160
           D T+++K    ++DKW LV +FL+ +GLVK HI SFDYFIN +IK +++AN  I SDV+P
Sbjct: 6   DLTAEVK---TLKDKWALVPAFLQVRGLVKQHIASFDYFINEDIKNILRANERITSDVNP 62

Query: 161 LFYLKYLDIHVG 172
            FY+KYLDI VG
Sbjct: 63  SFYVKYLDIRVG 74


>gi|393911066|gb|EJD76149.1| DNA-directed RNA polymerase [Loa loa]
          Length = 1136

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 181/272 (66%), Positives = 219/272 (80%), Gaps = 12/272 (4%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQQ RID+LMY LVY QRP+V++KTI   N
Sbjct: 665  GLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQQKRIDSLMYLLVYPQRPLVKTKTIEFCN 724

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNA IAVMSYSGYDIEDAL++NKASLDRG+GRCLVY+++K   ++YPNQT DR
Sbjct: 725  FEKLPAGQNAVIAVMSYSGYDIEDALVLNKASLDRGYGRCLVYKHAKATARKYPNQTFDR 784

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSA---------- 1082
            ++GP +EA TRKP+Y+H+ LDQ+GIV  G  I  +QV++NK MP +S  A          
Sbjct: 785  LMGPTVEATTRKPIYKHQVLDQEGIVYVGACIHSKQVMINKHMPVVSTEAGATTSSNNDG 844

Query: 1083 --ISMATPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRH 1140
              +S    EYK+V V Y+  VPSY E+VL++ N +DA LIK+LLRQTRRPE+GDKFSSRH
Sbjct: 845  TNVSSHEVEYKDVSVVYRNPVPSYAERVLLTYNEDDAHLIKVLLRQTRRPELGDKFSSRH 904

Query: 1141 GQKGVIGLIVEQEDMPFNESGICPDIIMNPHG 1172
            GQKGV GLI +QEDMPFN+ G+CPD+IMNPHG
Sbjct: 905  GQKGVCGLIAQQEDMPFNDLGMCPDMIMNPHG 936



 Score =  280 bits (717), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 131/193 (67%), Positives = 157/193 (81%)

Query: 1180 TEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1239
             EYK+V V Y+  VPSY E+VL++ N +DA LIK+LLRQTRRPE+GDKFSSRHGQKGV G
Sbjct: 852  VEYKDVSVVYRNPVPSYAERVLLTYNEDDAHLIKVLLRQTRRPELGDKFSSRHGQKGVCG 911

Query: 1240 LIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTK 1299
            LI +QEDMPFN+ G+CPD+IMNPHGYPSRMTVGKL+ELL+GK  ++ G +  GTAFGG +
Sbjct: 912  LIAQQEDMPFNDLGMCPDMIMNPHGYPSRMTVGKLMELLSGKNAVLSGKFHYGTAFGGDQ 971

Query: 1300 LVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPR 1359
            +  V EEL   G+NY GKD+  SGITG+ L AYIY GP+YYQKLKHMV DK+HAR+RGPR
Sbjct: 972  VDVVCEELAARGFNYLGKDMLTSGITGQQLCAYIYFGPIYYQKLKHMVLDKMHARARGPR 1031

Query: 1360 VVLTRQPTGRRWK 1372
             VLTRQPT  R +
Sbjct: 1032 AVLTRQPTEGRAR 1044



 Score =  238 bits (607), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 111/163 (68%), Positives = 135/163 (82%)

Query: 173 IADKIIPKIKAAQFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYI 232
           IAD  + K  AA  DIV HMRQD ITNAL  A+ TGNWTI+RFKMERQGVTQVLSRLSYI
Sbjct: 382 IADNSLGKTLAAPLDIVKHMRQDLITNALVDALATGNWTIKRFKMERQGVTQVLSRLSYI 441

Query: 233 SGLGMMTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTEN 292
           S LGMMTRINS FEKTRKVSGPRSLQ SQWGMLCPSDTPEGE+CGLVKNLAL++HITT++
Sbjct: 442 SVLGMMTRINSTFEKTRKVSGPRSLQPSQWGMLCPSDTPEGESCGLVKNLALISHITTDS 501

Query: 293 DEKNMLKIMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAGIT 335
           DE+ +++++YN G+E +   +   + SP  ++VF+NG++ G+T
Sbjct: 502 DEEPVIRLLYNSGVEDVKSLHFSAIHSPVYHIVFLNGVIVGLT 544



 Score =  182 bits (462), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 89/136 (65%), Positives = 103/136 (75%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G + F+DF+ +G IEYLDVNE ND+ IAV E+ I+P  TTHLEI PFTLLGVCAG     
Sbjct: 612 GCRIFEDFVDDGLIEYLDVNEMNDASIAVYENQIKPN-TTHLEIEPFTLLGVCAG----- 665

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQQ RID+LMY LVY QRP+V+
Sbjct: 666 ---------LIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQQKRIDSLMYLLVYPQRPLVK 716

Query: 808 SKTIRITNFHKLPAGK 823
           +KTI   NF KLPAG+
Sbjct: 717 TKTIEFCNFEKLPAGQ 732



 Score =  105 bits (262), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 51/79 (64%), Positives = 62/79 (78%)

Query: 455 DARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAG 514
           +A DFLS+  IAH+P  +   KMKA+YL +MIRR++ A       DDRD+YGNKRLELAG
Sbjct: 302 EAIDFLSNLMIAHVPCPDGNMKMKAIYLGLMIRRLMQAEVGDTECDDRDFYGNKRLELAG 361

Query: 515 SLLSLMFEDVFKRFNSELK 533
           SLL+L+FEDVFKRFNSELK
Sbjct: 362 SLLALLFEDVFKRFNSELK 380



 Score =  103 bits (258), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 49/72 (68%), Positives = 59/72 (81%), Gaps = 1/72 (1%)

Query: 341 VCKPEIEESFNYTR-QTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIML 399
           V  P  EE FN    + +PHECRLRD+TYSAPI+VDIEYTRGSQRV+R+ LVIG+MP+ML
Sbjct: 71  VGMPSSEEGFNQINDKISPHECRLRDMTYSAPISVDIEYTRGSQRVLRNGLVIGKMPVML 130

Query: 400 QSSKCVLRNKTE 411
           +SSKCVL+N  E
Sbjct: 131 RSSKCVLKNMNE 142



 Score = 86.7 bits (213), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/78 (53%), Positives = 54/78 (69%), Gaps = 10/78 (12%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           ++DKW LV +FL+ +GLVK HI S+DYF++ EIKK+++AN  I SD +P FYLKYLDI V
Sbjct: 12  VKDKWALVPAFLQVRGLVKQHIASYDYFVSTEIKKILRANDRITSDANPSFYLKYLDIRV 71

Query: 172 G----------IADKIIP 179
           G          I DKI P
Sbjct: 72  GMPSSEEGFNQINDKISP 89


>gi|312086795|ref|XP_003145218.1| RNA polymerase III 128kD subunit-PA [Loa loa]
          Length = 1040

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 181/272 (66%), Positives = 219/272 (80%), Gaps = 12/272 (4%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQQ RID+LMY LVY QRP+V++KTI   N
Sbjct: 569  GLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQQKRIDSLMYLLVYPQRPLVKTKTIEFCN 628

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNA IAVMSYSGYDIEDAL++NKASLDRG+GRCLVY+++K   ++YPNQT DR
Sbjct: 629  FEKLPAGQNAVIAVMSYSGYDIEDALVLNKASLDRGYGRCLVYKHAKATARKYPNQTFDR 688

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSA---------- 1082
            ++GP +EA TRKP+Y+H+ LDQ+GIV  G  I  +QV++NK MP +S  A          
Sbjct: 689  LMGPTVEATTRKPIYKHQVLDQEGIVYVGACIHSKQVMINKHMPVVSTEAGATTSSNNDG 748

Query: 1083 --ISMATPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRH 1140
              +S    EYK+V V Y+  VPSY E+VL++ N +DA LIK+LLRQTRRPE+GDKFSSRH
Sbjct: 749  TNVSSHEVEYKDVSVVYRNPVPSYAERVLLTYNEDDAHLIKVLLRQTRRPELGDKFSSRH 808

Query: 1141 GQKGVIGLIVEQEDMPFNESGICPDIIMNPHG 1172
            GQKGV GLI +QEDMPFN+ G+CPD+IMNPHG
Sbjct: 809  GQKGVCGLIAQQEDMPFNDLGMCPDMIMNPHG 840



 Score =  280 bits (717), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 131/193 (67%), Positives = 157/193 (81%)

Query: 1180 TEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1239
             EYK+V V Y+  VPSY E+VL++ N +DA LIK+LLRQTRRPE+GDKFSSRHGQKGV G
Sbjct: 756  VEYKDVSVVYRNPVPSYAERVLLTYNEDDAHLIKVLLRQTRRPELGDKFSSRHGQKGVCG 815

Query: 1240 LIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTK 1299
            LI +QEDMPFN+ G+CPD+IMNPHGYPSRMTVGKL+ELL+GK  ++ G +  GTAFGG +
Sbjct: 816  LIAQQEDMPFNDLGMCPDMIMNPHGYPSRMTVGKLMELLSGKNAVLSGKFHYGTAFGGDQ 875

Query: 1300 LVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPR 1359
            +  V EEL   G+NY GKD+  SGITG+ L AYIY GP+YYQKLKHMV DK+HAR+RGPR
Sbjct: 876  VDVVCEELAARGFNYLGKDMLTSGITGQQLCAYIYFGPIYYQKLKHMVLDKMHARARGPR 935

Query: 1360 VVLTRQPTGRRWK 1372
             VLTRQPT  R +
Sbjct: 936  AVLTRQPTEGRAR 948



 Score =  238 bits (606), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 111/163 (68%), Positives = 135/163 (82%)

Query: 173 IADKIIPKIKAAQFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYI 232
           IAD  + K  AA  DIV HMRQD ITNAL  A+ TGNWTI+RFKMERQGVTQVLSRLSYI
Sbjct: 286 IADNSLGKTLAAPLDIVKHMRQDLITNALVDALATGNWTIKRFKMERQGVTQVLSRLSYI 345

Query: 233 SGLGMMTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTEN 292
           S LGMMTRINS FEKTRKVSGPRSLQ SQWGMLCPSDTPEGE+CGLVKNLAL++HITT++
Sbjct: 346 SVLGMMTRINSTFEKTRKVSGPRSLQPSQWGMLCPSDTPEGESCGLVKNLALISHITTDS 405

Query: 293 DEKNMLKIMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAGIT 335
           DE+ +++++YN G+E +   +   + SP  ++VF+NG++ G+T
Sbjct: 406 DEEPVIRLLYNSGVEDVKSLHFSAIHSPVYHIVFLNGVIVGLT 448



 Score =  182 bits (462), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 89/136 (65%), Positives = 103/136 (75%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G + F+DF+ +G IEYLDVNE ND+ IAV E+ I+P  TTHLEI PFTLLGVCAG     
Sbjct: 516 GCRIFEDFVDDGLIEYLDVNEMNDASIAVYENQIKPN-TTHLEIEPFTLLGVCAG----- 569

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQQ RID+LMY LVY QRP+V+
Sbjct: 570 ---------LIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQQKRIDSLMYLLVYPQRPLVK 620

Query: 808 SKTIRITNFHKLPAGK 823
           +KTI   NF KLPAG+
Sbjct: 621 TKTIEFCNFEKLPAGQ 636



 Score =  105 bits (262), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 51/79 (64%), Positives = 62/79 (78%)

Query: 455 DARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAG 514
           +A DFLS+  IAH+P  +   KMKA+YL +MIRR++ A       DDRD+YGNKRLELAG
Sbjct: 206 EAIDFLSNLMIAHVPCPDGNMKMKAIYLGLMIRRLMQAEVGDTECDDRDFYGNKRLELAG 265

Query: 515 SLLSLMFEDVFKRFNSELK 533
           SLL+L+FEDVFKRFNSELK
Sbjct: 266 SLLALLFEDVFKRFNSELK 284



 Score = 78.6 bits (192), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/46 (76%), Positives = 43/46 (93%)

Query: 366 LTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKTE 411
           +TYSAPI+VDIEYTRGSQRV+R+ LVIG+MP+ML+SSKCVL+N  E
Sbjct: 1   MTYSAPISVDIEYTRGSQRVLRNGLVIGKMPVMLRSSKCVLKNMNE 46


>gi|241614087|ref|XP_002407492.1| RNA polymerase III, putative [Ixodes scapularis]
 gi|215502825|gb|EEC12319.1| RNA polymerase III, putative [Ixodes scapularis]
          Length = 1141

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 176/264 (66%), Positives = 222/264 (84%), Gaps = 3/264 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG I  NQ+NRID+L+Y LVY  RPMV++KTI + +
Sbjct: 679  GLIPYPHHNQSPRNTYQCAMGKQAMGTIALNQRNRIDSLLYLLVYPHRPMVKTKTIELIH 738

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F  +PAGQNAT+AVMSYSGYDIEDA++MN++S+DRGFGRC V R+ KC LK+Y NQ+HDR
Sbjct: 739  FEDIPAGQNATVAVMSYSGYDIEDAIVMNRSSIDRGFGRCQVCRHQKCTLKRYANQSHDR 798

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAI---SMATPE 1089
            ++GPL+++ T KP+++H  LD DGI  PG++I  RQVLVNK +P+ S         + PE
Sbjct: 799  VMGPLVDSTTMKPIWKHEPLDTDGIARPGDRIENRQVLVNKWVPSASSVGAQPGQPSPPE 858

Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
            +KEVPV+YKG  P ++EKVL+SSN+E+AFLIK+LLRQTRRPEIGDKFSSRHGQKGV+GLI
Sbjct: 859  HKEVPVAYKGLEPVHVEKVLISSNTEEAFLIKLLLRQTRRPEIGDKFSSRHGQKGVVGLI 918

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
             +QEDMPF++ G+CPD+IMNPHG 
Sbjct: 919  AQQEDMPFSDQGVCPDLIMNPHGF 942



 Score =  311 bits (798), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 143/192 (74%), Positives = 169/192 (88%)

Query: 1181 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1240
            E+KEVPV+YKG  P ++EKVL+SSN+E+AFLIK+LLRQTRRPEIGDKFSSRHGQKGV+GL
Sbjct: 858  EHKEVPVAYKGLEPVHVEKVLISSNTEEAFLIKLLLRQTRRPEIGDKFSSRHGQKGVVGL 917

Query: 1241 IVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKL 1300
            I +QEDMPF++ G+CPD+IMNPHG+PSRMTVGKLIELLAGKAG++ G +  GTAFGG+K+
Sbjct: 918  IAQQEDMPFSDQGVCPDLIMNPHGFPSRMTVGKLIELLAGKAGVLNGKFHYGTAFGGSKV 977

Query: 1301 VDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRV 1360
             DV EELIR G+NY+GKD   SGITGE L AYIY GP+YYQKLKHMV DK+HAR+RGPR 
Sbjct: 978  QDVGEELIRRGFNYRGKDCLTSGITGEPLSAYIYFGPIYYQKLKHMVMDKVHARARGPRA 1037

Query: 1361 VLTRQPTGRRWK 1372
            VLTRQPT  R +
Sbjct: 1038 VLTRQPTEGRSR 1049



 Score =  256 bits (654), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 125/206 (60%), Positives = 161/206 (78%), Gaps = 4/206 (1%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVNHM 192
           ID  DY+ N   K+L  A + +    + LF     ++ + +ADK IPK++A QFD+V ++
Sbjct: 360 IDDRDYYGN---KRLELAGSLLSLLFEDLFKRFNTELKL-VADKTIPKVRATQFDVVKYV 415

Query: 193 RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVS 252
           RQD ITN L ++I TGNWT++RFKMER GVTQVL+RLSYIS LGMMTR+NSQFEKTRKVS
Sbjct: 416 RQDLITNGLVSSISTGNWTVKRFKMERIGVTQVLTRLSYISALGMMTRVNSQFEKTRKVS 475

Query: 253 GPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMF 312
           GPRSLQ SQ+GMLCPSDTPEGEACGLVKNLALMTHITT+ +E  +++++ N+G+E + + 
Sbjct: 476 GPRSLQPSQFGMLCPSDTPEGEACGLVKNLALMTHITTDLEEAPIVRLLLNLGVEDVHLL 535

Query: 313 NGEELSSPGVYLVFVNGILAGITCHH 338
           NGEELS P VYLVF+NG + G+  +H
Sbjct: 536 NGEELSDPSVYLVFLNGGIIGVVHNH 561



 Score =  166 bits (420), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 81/136 (59%), Positives = 98/136 (72%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G   F+DF+  G +E+LDVNE NDS+IA+ E  I P  TTHLEI PFTLLGVCAG     
Sbjct: 626 GLLFFNDFVRRGLVEFLDVNEENDSYIALRECDIGPE-TTHLEIEPFTLLGVCAG----- 679

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQAMG I  NQ+NRID+L+Y LVY  RPMV+
Sbjct: 680 ---------LIPYPHHNQSPRNTYQCAMGKQAMGTIALNQRNRIDSLLYLLVYPHRPMVK 730

Query: 808 SKTIRITNFHKLPAGK 823
           +KTI + +F  +PAG+
Sbjct: 731 TKTIELIHFEDIPAGQ 746



 Score =  132 bits (331), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 59/85 (69%), Positives = 77/85 (90%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           +KTPVDDARD L++T +AH+PV +  F++KAMYLA+MIRR++ A ++ +M+DDRDYYGNK
Sbjct: 310 RKTPVDDARDILATTVLAHVPVEHYNFRVKAMYLALMIRRVIEAQTNREMIDDRDYYGNK 369

Query: 509 RLELAGSLLSLMFEDVFKRFNSELK 533
           RLELAGSLLSL+FED+FKRFN+ELK
Sbjct: 370 RLELAGSLLSLLFEDLFKRFNTELK 394



 Score =  110 bits (276), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 58/116 (50%), Positives = 79/116 (68%), Gaps = 14/116 (12%)

Query: 303 NIGIEHIAMFNGEELSS---PGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPH 359
           N+ I+ I   N E+++S   P  YL +++            + KP++EE+   ++ TTPH
Sbjct: 59  NVEIKEIVRAN-EKITSDADPQFYLKYLD----------IHIGKPDVEENCVASKATTPH 107

Query: 360 ECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKTEYTSS 415
           ECRLRD+TYSAPITVDIEYTRG+QRVVR D  IGRMPIML+S+ C+L +KT +  S
Sbjct: 108 ECRLRDMTYSAPITVDIEYTRGTQRVVRGDFPIGRMPIMLRSANCILADKTHFQMS 163



 Score = 91.7 bits (226), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 42/75 (56%), Positives = 56/75 (74%)

Query: 101 DETSKLKDSPEIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDP 160
           D  S  +   E+ +KWKL+ +FL  +GLV+ HIDSF++FINVEIK++++AN  I SD DP
Sbjct: 19  DTDSLQQPVKELTEKWKLLPAFLSVQGLVRHHIDSFNHFINVEIKEIVRANEKITSDADP 78

Query: 161 LFYLKYLDIHVGIAD 175
            FYLKYLDIH+G  D
Sbjct: 79  QFYLKYLDIHIGKPD 93


>gi|321468089|gb|EFX79076.1| hypothetical protein DAPPUDRAFT_305037 [Daphnia pulex]
          Length = 1134

 Score =  392 bits (1006), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 172/267 (64%), Positives = 221/267 (82%), Gaps = 6/267 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG I  NQ+NRIDTL+YNLVY  +PMV+++TI + N
Sbjct: 669  GLIPYPHHNQSPRNTYQCAMGKQAMGTIACNQRNRIDTLLYNLVYPHKPMVKTRTIELIN 728

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F  LPAGQNA +AVMSYSG+DIEDA ++NKASLDRG+GRCLVY+N+KC LK+Y NQ+ DR
Sbjct: 729  FENLPAGQNAMVAVMSYSGFDIEDATVLNKASLDRGYGRCLVYKNAKCALKRYNNQSSDR 788

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAI------SMA 1086
            + GP+L+A ++KP+++H  LD DG  A G+ +  +QVL+NK+MPT  V  +      ++ 
Sbjct: 789  VNGPILDAASKKPIWKHDILDADGFAAVGQPVEPKQVLINKAMPTAPVVTVAPGAPAAVP 848

Query: 1087 TPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVI 1146
             PEY++VP++YKG++PSY+EKV+ SSN+E+A +IK+ LRQTRRPEIGDKFSSRHGQKGV 
Sbjct: 849  LPEYRDVPIAYKGAIPSYVEKVMFSSNAEEAHIIKIQLRQTRRPEIGDKFSSRHGQKGVT 908

Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGL 1173
             L+ EQED+PF E GICPD+IMNPHG 
Sbjct: 909  ALVAEQEDLPFTELGICPDVIMNPHGF 935



 Score =  315 bits (808), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 148/229 (64%), Positives = 180/229 (78%)

Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVS 1203
              +G  VE + +  N++     ++    G      + EY++VP++YKG++PSY+EKV+ S
Sbjct: 814  AAVGQPVEPKQVLINKAMPTAPVVTVAPGAPAAVPLPEYRDVPIAYKGAIPSYVEKVMFS 873

Query: 1204 SNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPH 1263
            SN+E+A +IK+ LRQTRRPEIGDKFSSRHGQKGV  L+ EQED+PF E GICPD+IMNPH
Sbjct: 874  SNAEEAHIIKIQLRQTRRPEIGDKFSSRHGQKGVTALVAEQEDLPFTELGICPDVIMNPH 933

Query: 1264 GYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSG 1323
            G+PSRMTVGKLIELLAGKAGL+EG +  GTAFGG+K+ DV EELI+HGYNYQGK+   SG
Sbjct: 934  GFPSRMTVGKLIELLAGKAGLLEGKFHYGTAFGGSKVQDVSEELIKHGYNYQGKECMTSG 993

Query: 1324 ITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
             TGE L AYIY GPVYYQKLKHMV DK+HARSRGPR VLTRQPT  R +
Sbjct: 994  TTGEQLSAYIYFGPVYYQKLKHMVMDKMHARSRGPRAVLTRQPTEGRAR 1042



 Score =  258 bits (658), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 127/203 (62%), Positives = 156/203 (76%), Gaps = 4/203 (1%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVNHM 192
           +D  DY+ N   K+L  A + +    + LF     ++   IADK IPKIKAAQFD++ H+
Sbjct: 350 VDDRDYYGN---KRLELAGSLLSLLFEDLFKRMNFELK-QIADKNIPKIKAAQFDVIKHI 405

Query: 193 RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVS 252
           R D ITN L  AI TGNWTI+RF+M+RQGVTQ+L RLSYISGLGMMTR+NSQFEKTRKVS
Sbjct: 406 RTDHITNGLENAISTGNWTIKRFRMDRQGVTQMLCRLSYISGLGMMTRVNSQFEKTRKVS 465

Query: 253 GPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMF 312
           GPRSLQ SQWGMLCPSDTPEGE CGLVKNLALMTHITTE +E+ + +I  N+G+E I +F
Sbjct: 466 GPRSLQPSQWGMLCPSDTPEGEGCGLVKNLALMTHITTEAEEEPISRIAQNMGVEDINLF 525

Query: 313 NGEELSSPGVYLVFVNGILAGIT 335
           +GEE+S P +Y VF+NG + G+ 
Sbjct: 526 SGEEISDPSIYTVFLNGNILGLV 548



 Score =  178 bits (452), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 86/135 (63%), Positives = 102/135 (75%), Gaps = 15/135 (11%)

Query: 689 FKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQY 748
           F+ F+DF+++G IEYLDVNE NDS+IAV ES I    TTHLEI PFTLLGVCAG      
Sbjct: 617 FRTFEDFIHDGLIEYLDVNEENDSNIAVYESDINEE-TTHLEIEPFTLLGVCAG------ 669

Query: 749 NKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVES 808
                   L+PYPHHNQ+PRNTYQCAMGKQAMG I  NQ+NRIDTL+YNLVY  +PMV++
Sbjct: 670 --------LIPYPHHNQSPRNTYQCAMGKQAMGTIACNQRNRIDTLLYNLVYPHKPMVKT 721

Query: 809 KTIRITNFHKLPAGK 823
           +TI + NF  LPAG+
Sbjct: 722 RTIELINFENLPAGQ 736



 Score =  130 bits (326), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 64/97 (65%), Positives = 79/97 (81%), Gaps = 1/97 (1%)

Query: 439 KLRQKRF-QTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPD 497
           KLRQKRF    KKT  ++AR+ L++T +AH+PV N  FK KAMYLA+MIRR++ A +DP 
Sbjct: 289 KLRQKRFFGGPKKTATEEARETLATTILAHVPVENFNFKAKAMYLALMIRRVIQAENDPT 348

Query: 498 MLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELKE 534
            +DDRDYYGNKRLELAGSLLSL+FED+FKR N ELK+
Sbjct: 349 SVDDRDYYGNKRLELAGSLLSLLFEDLFKRMNFELKQ 385



 Score =  103 bits (256), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 46/66 (69%), Positives = 55/66 (83%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQ 400
           V KP+  E  N++R TTPHECRLRD+TYSAP+TVDIEYTRG QR+VR+ + IGRMPIML+
Sbjct: 81  VGKPDSIEDMNHSRLTTPHECRLRDMTYSAPVTVDIEYTRGQQRIVRNGIPIGRMPIMLR 140

Query: 401 SSKCVL 406
           SS C L
Sbjct: 141 SSNCTL 146



 Score = 91.3 bits (225), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 41/66 (62%), Positives = 52/66 (78%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           + +KWKLV +FLK KGLVK HIDS++YFINV+IKK+++AN  + S  D  FY+KYLDIHV
Sbjct: 22  VEEKWKLVPAFLKTKGLVKQHIDSYNYFINVDIKKIVKANEKVVSHSDQTFYIKYLDIHV 81

Query: 172 GIADKI 177
           G  D I
Sbjct: 82  GKPDSI 87


>gi|402589446|gb|EJW83378.1| DNA-directed RNA polymerase [Wuchereria bancrofti]
          Length = 947

 Score =  391 bits (1005), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 179/272 (65%), Positives = 220/272 (80%), Gaps = 12/272 (4%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQQ RID+LMY LVY QRP+V++KTI   N
Sbjct: 663  GLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQQKRIDSLMYLLVYPQRPLVKTKTIEFCN 722

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNA IAVMSYSGYDIEDAL++NKASLDRG+GRCLVY+++K   ++YPNQT DR
Sbjct: 723  FEKLPAGQNAIIAVMSYSGYDIEDALVLNKASLDRGYGRCLVYKHAKATARKYPNQTFDR 782

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATP---- 1088
            ++GP +EA TRKP+Y+H+ LDQ+GIV  G  I  +QV++NK MP +S+ A +  +     
Sbjct: 783  LMGPTIEATTRKPIYKHQVLDQEGIVYVGACIRSKQVMINKHMPVVSMEAGATVSNNDGT 842

Query: 1089 --------EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRH 1140
                    EYK+V V Y+  +PSY E+VL++ N +DA LIK+LLRQTRRPE+GDKFSSRH
Sbjct: 843  SVGGSHGVEYKDVSVVYRNPIPSYAERVLLTYNEDDAHLIKVLLRQTRRPELGDKFSSRH 902

Query: 1141 GQKGVIGLIVEQEDMPFNESGICPDIIMNPHG 1172
            GQKGV GLI +QEDMPFN+ G+CPD+IMNPHG
Sbjct: 903  GQKGVCGLIAQQEDMPFNDLGMCPDMIMNPHG 934



 Score =  239 bits (611), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 111/163 (68%), Positives = 135/163 (82%)

Query: 173 IADKIIPKIKAAQFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYI 232
           IAD  + K  AA  DIV H+RQD ITNAL  A+ TGNWTI+RFKMERQGVTQVLSRLSYI
Sbjct: 380 IADNSLGKTLAAPLDIVKHVRQDLITNALVDALATGNWTIKRFKMERQGVTQVLSRLSYI 439

Query: 233 SGLGMMTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTEN 292
           S LGMMTRINS FEKTRKVSGPRSLQ SQWGMLCPSDTPEGE+CGLVKNLAL++HITT++
Sbjct: 440 SVLGMMTRINSTFEKTRKVSGPRSLQPSQWGMLCPSDTPEGESCGLVKNLALISHITTDS 499

Query: 293 DEKNMLKIMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAGIT 335
           DEK +++++YN G+E +   +   + SP  ++VF+NG++ G+T
Sbjct: 500 DEKPVIRLLYNAGVEDVKSLHFSAIHSPAYHIVFLNGVIVGLT 542



 Score =  183 bits (464), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 90/139 (64%), Positives = 104/139 (74%), Gaps = 15/139 (10%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G + F+DF+ +G IEYLDVNE ND+ IAV E+ I+P  TTHLEI PFTLLGVCAG     
Sbjct: 610 GCRIFEDFVDDGLIEYLDVNEMNDASIAVYENQIKP-TTTHLEIEPFTLLGVCAG----- 663

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQQ RID+LMY LVY QRP+V+
Sbjct: 664 ---------LIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQQKRIDSLMYLLVYPQRPLVK 714

Query: 808 SKTIRITNFHKLPAGKCQI 826
           +KTI   NF KLPAG+  I
Sbjct: 715 TKTIEFCNFEKLPAGQNAI 733



 Score =  160 bits (405), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 71/97 (73%), Positives = 85/97 (87%)

Query: 1180 TEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1239
             EYK+V V Y+  +PSY E+VL++ N +DA LIK+LLRQTRRPE+GDKFSSRHGQKGV G
Sbjct: 850  VEYKDVSVVYRNPIPSYAERVLLTYNEDDAHLIKVLLRQTRRPELGDKFSSRHGQKGVCG 909

Query: 1240 LIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIE 1276
            LI +QEDMPFN+ G+CPD+IMNPHGYPSRMTVGKL+E
Sbjct: 910  LIAQQEDMPFNDLGMCPDMIMNPHGYPSRMTVGKLME 946



 Score =  104 bits (260), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 50/79 (63%), Positives = 62/79 (78%)

Query: 455 DARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAG 514
           +A DFLS+  IAH+P  +   KMKA+YL +M+RR++ A       DDRD+YGNKRLELAG
Sbjct: 300 EAIDFLSNLMIAHVPCPDGNMKMKAVYLGLMVRRLMQAEVGDTECDDRDFYGNKRLELAG 359

Query: 515 SLLSLMFEDVFKRFNSELK 533
           SLL+L+FEDVFKRFNSELK
Sbjct: 360 SLLALLFEDVFKRFNSELK 378



 Score =  103 bits (257), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 48/72 (66%), Positives = 59/72 (81%), Gaps = 1/72 (1%)

Query: 341 VCKPEIEESFN-YTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIML 399
           V  P  EE FN    + +PHECRLRD+TYSAPI+VDIEYTRGSQRV+R+ L+IG+MP+ML
Sbjct: 70  VGMPSSEEGFNQINDKISPHECRLRDMTYSAPISVDIEYTRGSQRVLRNGLIIGKMPVML 129

Query: 400 QSSKCVLRNKTE 411
           +SSKCVL+N  E
Sbjct: 130 RSSKCVLKNMNE 141



 Score = 87.0 bits (214), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 43/78 (55%), Positives = 54/78 (69%), Gaps = 10/78 (12%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           I+DKW LV +FL+ +GLVK HI S+DYF++ EIKK+++AN  I SD +P FYLKYLDI V
Sbjct: 11  IKDKWTLVPAFLQVRGLVKQHIASYDYFVSTEIKKILRANDRITSDANPSFYLKYLDIRV 70

Query: 172 G----------IADKIIP 179
           G          I DKI P
Sbjct: 71  GMPSSEEGFNQINDKISP 88


>gi|405953099|gb|EKC20822.1| DNA-directed RNA polymerase III subunit RPC2 [Crassostrea gigas]
          Length = 1060

 Score =  391 bits (1004), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 180/260 (69%), Positives = 215/260 (82%), Gaps = 11/260 (4%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMY L Y Q P+V+SKTI + +
Sbjct: 611  GLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLCYPQAPLVKSKTIELIH 670

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNAT+AVMS+SGYDIEDAL++NKASLDRGFGRCLVYR   C LK+Y NQ+ D+
Sbjct: 671  FDKLPAGQNATVAVMSFSGYDIEDALVLNKASLDRGFGRCLVYRKQACTLKRYTNQSFDK 730

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKE 1092
            ++GP+++A T KP+++H ALD DGI +PGE++  RQVLVNK MPT++++ I         
Sbjct: 731  VMGPMVDASTHKPIWKHEALDSDGICSPGERMENRQVLVNKWMPTVTMNPIQ-------- 782

Query: 1093 VPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQ 1152
                YKG+   Y+EKVL+SSN E+AFLIK+L RQTRRPEIGDKFSSRHGQKGV GLIV Q
Sbjct: 783  ---QYKGAEACYIEKVLISSNPEEAFLIKILQRQTRRPEIGDKFSSRHGQKGVCGLIVPQ 839

Query: 1153 EDMPFNESGICPDIIMNPHG 1172
            EDMPF + GICPDIIMNPHG
Sbjct: 840  EDMPFTDLGICPDIIMNPHG 859



 Score =  290 bits (741), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 134/182 (73%), Positives = 155/182 (85%)

Query: 1189 YKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMP 1248
            YKG+   Y+EKVL+SSN E+AFLIK+L RQTRRPEIGDKFSSRHGQKGV GLIV QEDMP
Sbjct: 784  YKGAEACYIEKVLISSNPEEAFLIKILQRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMP 843

Query: 1249 FNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELI 1308
            F + GICPDIIMNPHGYPSRMTVGKL+ELL  KAG++EG +  GTAFGG K+ D+ E+L+
Sbjct: 844  FTDLGICPDIIMNPHGYPSRMTVGKLMELLGSKAGVLEGKFHYGTAFGGDKVCDLSEDLV 903

Query: 1309 RHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTG 1368
            +HG+NY GKD   SGITGE LEAYI+ GP+YYQKLKHMV DK+HAR++GPR VLTRQPT 
Sbjct: 904  KHGFNYLGKDFVTSGITGEPLEAYIFFGPIYYQKLKHMVLDKMHARAKGPRAVLTRQPTE 963

Query: 1369 RR 1370
             R
Sbjct: 964  GR 965



 Score =  181 bits (459), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 89/136 (65%), Positives = 102/136 (75%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           GF+ FDDFL EG +EYLDVNE ND  I++ ESGI    TTHLEI PFT+LGVCAG     
Sbjct: 558 GFRSFDDFLKEGLVEYLDVNEENDCMISLYESGITRE-TTHLEIEPFTILGVCAG----- 611

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMY L Y Q P+V+
Sbjct: 612 ---------LIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLCYPQAPLVK 662

Query: 808 SKTIRITNFHKLPAGK 823
           SKTI + +F KLPAG+
Sbjct: 663 SKTIELIHFDKLPAGQ 678



 Score =  179 bits (453), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 97/210 (46%), Positives = 131/210 (62%), Gaps = 34/210 (16%)

Query: 134 DSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVNHMR 193
           D  DY+ N  ++   Q  + ++ D+    + K+      IAD  IPK +AAQFDI+ HMR
Sbjct: 347 DDRDYYGNKRLELAGQLLSLLFEDL----FKKFNSELKRIADMTIPKPRAAQFDIIKHMR 402

Query: 194 QDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVSG 253
           QD ITN L  AI TGNW+I+RFKMER GVTQVLSRLS+IS LGMMTRI+SQ         
Sbjct: 403 QDQITNGLVNAISTGNWSIKRFKMERAGVTQVLSRLSFISALGMMTRISSQ--------- 453

Query: 254 PRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMFN 313
                                ACGLVKNLALMTHITT+ +E  ++++ +N+G+E I + +
Sbjct: 454 ---------------------ACGLVKNLALMTHITTDMEEDPIIRLAFNMGVEDIQLLS 492

Query: 314 GEELSSPGVYLVFVNGILAGITCHHKEVCK 343
           GEE++S  VYLVF+NG + G+   HK++ +
Sbjct: 493 GEEMTSSRVYLVFLNGNILGVIRDHKKLVR 522



 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 57/97 (58%), Positives = 76/97 (78%), Gaps = 1/97 (1%)

Query: 438 KKLRQKR-FQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDP 496
           +++RQ+R +   KKT VD+AR+ L    +AH+PV+   FK+KA YLA+M+RR++LA  + 
Sbjct: 284 QRVRQRRVWGGSKKTKVDEAREALHDIVLAHVPVVEWNFKLKAAYLALMVRRVILAKGEQ 343

Query: 497 DMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
              DDRDYYGNKRLELAG LLSL+FED+FK+FNSELK
Sbjct: 344 VKGDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSELK 380



 Score =  114 bits (285), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 59/110 (53%), Positives = 78/110 (70%), Gaps = 12/110 (10%)

Query: 303 NIGIEHIAMFNGEELSS--PGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHE 360
           N+ I++I   N + LS   P  Y+ ++N I  G+         P++EE FN T+  +PHE
Sbjct: 51  NVEIKNIMKANDKILSDADPNFYMKYLN-IYVGM---------PDVEEGFNITKPISPHE 100

Query: 361 CRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
           CRLRD+TYSAPITVDIEYTRG+QR+VR++L IGRMPIML+SS CVL  K+
Sbjct: 101 CRLRDMTYSAPITVDIEYTRGNQRIVRNNLPIGRMPIMLRSSNCVLNGKS 150



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 42/64 (65%), Positives = 53/64 (82%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           I +KWKL+ +FLK KGLVK HIDSF++FINVEIK +M+AN  I SD DP FY+KYL+I+V
Sbjct: 22  IEEKWKLLPAFLKVKGLVKQHIDSFNFFINVEIKNIMKANDKILSDADPNFYMKYLNIYV 81

Query: 172 GIAD 175
           G+ D
Sbjct: 82  GMPD 85


>gi|307178142|gb|EFN66950.1| DNA-directed RNA polymerase III subunit RPC2 [Camponotus floridanus]
          Length = 1120

 Score =  390 bits (1003), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 178/266 (66%), Positives = 225/266 (84%), Gaps = 5/266 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYP+HNQ+PRNTYQCAMGKQA+G IGYNQ+NRIDTLMYNLVY QRP+V+++ I + N
Sbjct: 656  GLIPYPNHNQSPRNTYQCAMGKQAIGAIGYNQRNRIDTLMYNLVYPQRPIVKTRQIELIN 715

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAG+NA +AVMS+SGYDIEDALI+NKAS+DRG+GRCLVYRNSKC++K +PNQ  D 
Sbjct: 716  FDKLPAGENALVAVMSFSGYDIEDALILNKASIDRGYGRCLVYRNSKCIIKNHPNQVMDV 775

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS-----AISMAT 1087
            ILG  L+A T+KP+ +H  L+ DGI A G  +  ++V+VNK++ T S +     + +  +
Sbjct: 776  ILGQSLDAITKKPIPKHDILENDGIAAAGVMVENKKVMVNKAVSTRSGNLGPSRSDNFQS 835

Query: 1088 PEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
             +Y+   VSYKGSVP+Y+EKV+VSSN+E+AFLIK+LLRQTRRPEIGDKFSSRHGQKGV+G
Sbjct: 836  QDYRSAEVSYKGSVPAYIEKVMVSSNAENAFLIKLLLRQTRRPEIGDKFSSRHGQKGVVG 895

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            LIV+QED+PFN+ GICPD+IMNPHG 
Sbjct: 896  LIVDQEDLPFNDYGICPDVIMNPHGF 921



 Score =  308 bits (788), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 137/192 (71%), Positives = 169/192 (88%)

Query: 1181 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1240
            +Y+   VSYKGSVP+Y+EKV+VSSN+E+AFLIK+LLRQTRRPEIGDKFSSRHGQKGV+GL
Sbjct: 837  DYRSAEVSYKGSVPAYIEKVMVSSNAENAFLIKLLLRQTRRPEIGDKFSSRHGQKGVVGL 896

Query: 1241 IVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKL 1300
            IV+QED+PFN+ GICPD+IMNPHG+PSRMTVGKLIE+LAGKAG++ G + + TAF G K+
Sbjct: 897  IVDQEDLPFNDYGICPDVIMNPHGFPSRMTVGKLIEVLAGKAGIVNGKFHDATAFEGAKV 956

Query: 1301 VDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRV 1360
             D+ EEL +HGYNY GKD+FYSG+ G+ +  Y++ GPVYYQKLKHMVQDKIH R++GP+V
Sbjct: 957  EDLCEELAQHGYNYLGKDLFYSGMNGQPITGYLFFGPVYYQKLKHMVQDKIHVRAKGPKV 1016

Query: 1361 VLTRQPTGRRWK 1372
            +LTRQPT  R K
Sbjct: 1017 ILTRQPTEGRSK 1028



 Score =  240 bits (612), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 128/229 (55%), Positives = 161/229 (70%), Gaps = 7/229 (3%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVNHM 192
           ID+ DY+ N   K+L  A + +    + LF     ++ + IADK IPK+KAA FDI  ++
Sbjct: 335 IDNKDYYGN---KRLELAGSLLALMFEDLFKRFNWELKM-IADKNIPKVKAAPFDITKYI 390

Query: 193 RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVS 252
           R+DTITN L  AI +GNWTI+RF+MER GVTQVLSRLSYIS LGMMTR++SQFEKTRK+S
Sbjct: 391 RKDTITNGLAFAISSGNWTIKRFRMERHGVTQVLSRLSYISALGMMTRVHSQFEKTRKIS 450

Query: 253 GPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMF 312
           GPR+L GSQWGMLCP+DTPEGEACGLVKNLALM HITTE  E   +K+M N+G++ I   
Sbjct: 451 GPRALHGSQWGMLCPNDTPEGEACGLVKNLALMAHITTEMPEGPFIKLMRNLGVQIIYTC 510

Query: 313 NGEELSSPGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHEC 361
            G EL    +Y+VFVNG +AGI    KE    ++   F   R+    +C
Sbjct: 511 VGGELIKKDIYVVFVNGNMAGII---KESLVLQLVHQFRLLRRMGYIDC 556



 Score =  172 bits (437), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 85/132 (64%), Positives = 100/132 (75%), Gaps = 15/132 (11%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKR 751
           F+DF++ G IEYLDVNE NDS IA  ES I    TTHLEIA FT+LGVCAG         
Sbjct: 607 FNDFVHAGLIEYLDVNEENDSLIACKESEI-IAQTTHLEIAEFTILGVCAG--------- 656

Query: 752 FHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTI 811
                L+PYP+HNQ+PRNTYQCAMGKQA+G IGYNQ+NRIDTLMYNLVY QRP+V+++ I
Sbjct: 657 -----LIPYPNHNQSPRNTYQCAMGKQAIGAIGYNQRNRIDTLMYNLVYPQRPIVKTRQI 711

Query: 812 RITNFHKLPAGK 823
            + NF KLPAG+
Sbjct: 712 ELINFDKLPAGE 723



 Score =  115 bits (288), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 53/101 (52%), Positives = 81/101 (80%), Gaps = 2/101 (1%)

Query: 435 LSCKKLRQKRFQTY--KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLA 492
           L+ K+ + +  Q+Y  K + +D+ +D L++  ++H+PVI+  F+ KA++LA+MIRR++ A
Sbjct: 269 LNNKRRQTRSAQSYAAKFSVIDEMKDLLAANVLSHVPVIDFNFRTKALHLALMIRRVIDA 328

Query: 493 LSDPDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
            SD +++D++DYYGNKRLELAGSLL+LMFED+FKRFN ELK
Sbjct: 329 QSDRNLIDNKDYYGNKRLELAGSLLALMFEDLFKRFNWELK 369



 Score = 99.0 bits (245), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 42/69 (60%), Positives = 55/69 (79%)

Query: 344 PEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSK 403
           P+I++  N  + TTPHECRLRDL YSAPI VDIE+ R +QR+  +++VIGRMP+ML+SS 
Sbjct: 68  PDIDDGSNVMKSTTPHECRLRDLNYSAPIIVDIEHIRNNQRIRNTNMVIGRMPVMLRSSN 127

Query: 404 CVLRNKTEY 412
           CVL NK+ Y
Sbjct: 128 CVLTNKSHY 136



 Score = 82.0 bits (201), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/68 (55%), Positives = 53/68 (77%)

Query: 108 DSPEIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYL 167
           ++ EI++K KLV +FLK+KGLVK HIDS++YFIN EIK +++AN  + S  D  FY+KYL
Sbjct: 2   ETNEIKNKAKLVEAFLKDKGLVKQHIDSYNYFINKEIKNIVKANEKVLSSEDAHFYIKYL 61

Query: 168 DIHVGIAD 175
           +I VG+ D
Sbjct: 62  NIRVGLPD 69


>gi|242006406|ref|XP_002424041.1| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide,
            putative [Pediculus humanus corporis]
 gi|212507347|gb|EEB11303.1| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide,
            putative [Pediculus humanus corporis]
          Length = 1137

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 178/262 (67%), Positives = 221/262 (84%), Gaps = 2/262 (0%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++PYPH+NQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTL+YN+VY Q+PMV +K + + N+
Sbjct: 676  IIPYPHNNQSPRNTYQCAMGKQAMGAIGYNQENRIDTLLYNMVYTQKPMVITKPMVMVNY 735

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             KLPAGQNA + VMSYSGYDIEDALI+NKASL+RG+GRC V+RN+KCVLK+Y + T DRI
Sbjct: 736  DKLPAGQNAIVCVMSYSGYDIEDALIINKASLERGYGRCQVFRNTKCVLKRYADGTSDRI 795

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAIS--MATPEYK 1091
             GPL++A+TRKP+++H  LD DGI APGE+I  RQVL+NKS+P+ S ++        +Y 
Sbjct: 796  QGPLVDAETRKPLWKHGVLDTDGIGAPGEKILNRQVLINKSVPSRSNTSNVPIFGERDYI 855

Query: 1092 EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVE 1151
            + PV YKG   SY++KVL+S+NS+D  LIK+ LRQTR PEIGDKFSSRHGQKGV+GLIVE
Sbjct: 856  DTPVDYKGLEHSYIDKVLISTNSDDDSLIKIKLRQTRIPEIGDKFSSRHGQKGVVGLIVE 915

Query: 1152 QEDMPFNESGICPDIIMNPHGL 1173
            QE+MPFNESGICPD+IMNPHG 
Sbjct: 916  QENMPFNESGICPDVIMNPHGF 937



 Score =  303 bits (775), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 139/190 (73%), Positives = 167/190 (87%)

Query: 1181 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1240
            +Y + PV YKG   SY++KVL+S+NS+D  LIK+ LRQTR PEIGDKFSSRHGQKGV+GL
Sbjct: 853  DYIDTPVDYKGLEHSYIDKVLISTNSDDDSLIKIKLRQTRIPEIGDKFSSRHGQKGVVGL 912

Query: 1241 IVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKL 1300
            IVEQE+MPFNESGICPD+IMNPHG+PSRMTVGKLIELLAGKAG++ G +  GTAFGG+ +
Sbjct: 913  IVEQENMPFNESGICPDVIMNPHGFPSRMTVGKLIELLAGKAGVVTGKHHYGTAFGGSTV 972

Query: 1301 VDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRV 1360
             +VQEEL+++ +NY+GKDI YSGITGE +E Y+YSGPV+YQ+LKHMVQDKIHAR+RGPR 
Sbjct: 973  SEVQEELVKNKFNYEGKDILYSGITGEPMEVYVYSGPVFYQRLKHMVQDKIHARARGPRA 1032

Query: 1361 VLTRQPTGRR 1370
            VLTRQPT  R
Sbjct: 1033 VLTRQPTEGR 1042



 Score =  238 bits (608), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 126/240 (52%), Positives = 162/240 (67%), Gaps = 28/240 (11%)

Query: 132 HIDSFDY--------FINVEIKKLMQANAN--IYSDVDP---------------LF--YL 164
           H+D  D+        ++ + +++++QA  +   Y+D+D                LF  +L
Sbjct: 323 HVDVLDFRCMCEKTQYLGLMVRRILQAETDPRFYTDLDHYGNKRLELAGAMLGLLFEDFL 382

Query: 165 KYLDIHVG-IADKIIPKIKAAQFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVT 223
           K  ++ +  IADK+IPKIKAAQFDIV H+RQD ITN  + AI TGNWTI+RF+M  QGVT
Sbjct: 383 KRYNLELKMIADKMIPKIKAAQFDIVKHLRQDFITNGFSNAISTGNWTIKRFRMHTQGVT 442

Query: 224 QVLSRLSYISGLGMMTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLA 283
           QVLSRLSYIS  GMMTR+NS FEKTRKVSGPRSL  +QWGMLCPSDTPEGEACGLVKNLA
Sbjct: 443 QVLSRLSYISAFGMMTRVNSHFEKTRKVSGPRSLHATQWGMLCPSDTPEGEACGLVKNLA 502

Query: 284 LMTHITTENDEKNMLKIMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAGITCHHKEVCK 343
           LM HI+T + E  + +I    GI      N E++ +P  ++VF+NG L GIT   K++CK
Sbjct: 503 LMCHISTLSSELPIKQIAQLCGIIPPMRMNMEQILAPDTFMVFLNGSLLGITYEPKKLCK 562



 Score =  174 bits (441), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 86/138 (62%), Positives = 102/138 (73%), Gaps = 15/138 (10%)

Query: 689 FKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQY 748
           FK+F DFL +G IEY+DVNE NDS IA+ E  I P   THLEIAPFTLLGVCA I     
Sbjct: 623 FKKFIDFLDDGVIEYMDVNEENDSLIALYEKDITPK-HTHLEIAPFTLLGVCASI----- 676

Query: 749 NKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVES 808
                    +PYPH+NQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTL+YN+VY Q+PMV +
Sbjct: 677 ---------IPYPHNNQSPRNTYQCAMGKQAMGAIGYNQENRIDTLLYNMVYTQKPMVIT 727

Query: 809 KTIRITNFHKLPAGKCQI 826
           K + + N+ KLPAG+  I
Sbjct: 728 KPMVMVNYDKLPAGQNAI 745



 Score =  108 bits (270), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 49/76 (64%), Positives = 60/76 (78%)

Query: 340 EVCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIML 399
           EV  PEIEE  +  R +TP ECRLRD+TYSAPITV IEYTRG++R+++ DL+IGR+PIML
Sbjct: 82  EVGVPEIEEGLDVKRASTPQECRLRDMTYSAPITVTIEYTRGNERIIKKDLIIGRIPIML 141

Query: 400 QSSKCVLRNKTEYTSS 415
           QS+ CVL  K EY  S
Sbjct: 142 QSANCVLYGKDEYELS 157



 Score = 90.9 bits (224), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 56/76 (73%)

Query: 100 TDETSKLKDSPEIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVD 159
           T++  K K    + +KWKLV  FLK KGLVK H DSF+YFI V+IKK+++AN  + SDVD
Sbjct: 12  TNDIEKKKSIEILENKWKLVPEFLKIKGLVKQHTDSFNYFIKVDIKKIVEANQYVRSDVD 71

Query: 160 PLFYLKYLDIHVGIAD 175
           P FYLKYLD+ VG+ +
Sbjct: 72  PNFYLKYLDVEVGVPE 87



 Score = 90.9 bits (224), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 44/85 (51%), Positives = 60/85 (70%), Gaps = 1/85 (1%)

Query: 450 KTPVDDARDFLSSTCIAHIPVINMRFKM-KAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           K  VDDA D L++T +AH+ V++ R    K  YL +M+RR++ A +DP    D D+YGNK
Sbjct: 306 KNVVDDAGDILANTILAHVDVLDFRCMCEKTQYLGLMVRRILQAETDPRFYTDLDHYGNK 365

Query: 509 RLELAGSLLSLMFEDVFKRFNSELK 533
           RLELAG++L L+FED  KR+N ELK
Sbjct: 366 RLELAGAMLGLLFEDFLKRYNLELK 390


>gi|451995160|gb|EMD87629.1| hypothetical protein COCHEDRAFT_1206799 [Cochliobolus heterostrophus
            C5]
          Length = 1215

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 206/460 (44%), Positives = 272/460 (59%), Gaps = 99/460 (21%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ NRIDTL+Y +VY Q+PMV+++TI +T 
Sbjct: 760  GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLYLMVYPQQPMVKTRTIELTK 819

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+AVMSYSGYDIEDA               L+   + C          DR
Sbjct: 820  YDKLPAGQNATVAVMSYSGYDIEDA---------------LILNKASC----------DR 854

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKE 1092
              G       R  V++             + +   +   N +   I+  A+ +A P ++ 
Sbjct: 855  GFG-------RCQVFK-------------KHVTPLKTYANNTSDRINAGALDVANPNHQA 894

Query: 1093 VPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQ 1152
            +       V + LE       + DAFL+K                               
Sbjct: 895  IGQDGIAQVGARLE-------AGDAFLLK------------------------------- 916

Query: 1153 EDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLI 1212
              +P + +G   ++               YK+ P  YK    SY++K  ++ N     LI
Sbjct: 917  -SIPQDTAGPASNL---------------YKDKPERYKLPDCSYIDKACITENESGTTLI 960

Query: 1213 KMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVG 1272
            K+L+RQTRRPE+GDKFSSRHGQKG  GLIV+QEDMPFN+ GICPDIIMNPHG+PSRMTVG
Sbjct: 961  KLLMRQTRRPELGDKFSSRHGQKGTTGLIVQQEDMPFNDQGICPDIIMNPHGFPSRMTVG 1020

Query: 1273 KLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAY 1332
            K++ELL+GKAG++ G  + GTAFGG+ + D+ + L+  G++Y GKD   SGITGEA + Y
Sbjct: 1021 KMMELLSGKAGVLNGTLEYGTAFGGSTVEDMSQILVEKGFSYTGKDYLTSGITGEAHQFY 1080

Query: 1333 IYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
             + GP+YYQKLKHMVQDK+H+R+RGPR +LTRQPT  R +
Sbjct: 1081 TFFGPIYYQKLKHMVQDKMHSRARGPRAILTRQPTEGRAR 1120



 Score =  202 bits (514), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 100/164 (60%), Positives = 127/164 (77%), Gaps = 3/164 (1%)

Query: 175 DKIIPK-IKAAQFDIVNH--MRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSY 231
           DK++ K ++A +FD  +H  + ++ IT  +  AI TGNW+++RFKMER GVT VLSRLSY
Sbjct: 476 DKVLKKQVRAQEFDAFSHFSVHKNHITMGVERAIATGNWSLKRFKMERAGVTHVLSRLSY 535

Query: 232 ISGLGMMTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTE 291
           I+ LGMMTRI+SQFEKTRKVSGPR+LQ SQ+GMLC SDTPEGEACGLVKNLALMTHITTE
Sbjct: 536 IAALGMMTRISSQFEKTRKVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTE 595

Query: 292 NDEKNMLKIMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAGIT 335
           +D+  + KI++ +G E I    GEE+ + GVY V +NG    +T
Sbjct: 596 DDDDPVRKIVFMLGAEDICSQTGEEIHAEGVYSVCLNGTPIAVT 639



 Score =  163 bits (412), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 79/136 (58%), Positives = 97/136 (71%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G   F+DFL  G +EYLD NE ND++IA+ ES I    TTHLEI PFT+LG  AG     
Sbjct: 707 GTMEFEDFLTRGLVEYLDTNEENDTNIALRESDINEH-TTHLEIEPFTILGAVAG----- 760

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ NRIDTL+Y +VY Q+PMV+
Sbjct: 761 ---------LIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLYLMVYPQQPMVK 811

Query: 808 SKTIRITNFHKLPAGK 823
           ++TI +T + KLPAG+
Sbjct: 812 TRTIELTKYDKLPAGQ 827



 Score = 95.9 bits (237), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 41/79 (51%), Positives = 61/79 (77%)

Query: 455 DARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAG 514
           +A + LS+  + H+PV    ++ KA+Y+A+M RR+++A+ DP ++DDRDY GNKRLEL+G
Sbjct: 394 EAIECLSNVVLPHVPVEGTNYRPKALYVALMARRVLMAMQDPKLVDDRDYVGNKRLELSG 453

Query: 515 SLLSLMFEDVFKRFNSELK 533
            +LSL+FED FKRFN + K
Sbjct: 454 QMLSLLFEDHFKRFNHDFK 472



 Score = 83.6 bits (205), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 39/66 (59%), Positives = 51/66 (77%), Gaps = 1/66 (1%)

Query: 347 EESFNYTRQT-TPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCV 405
           E+   + R T TP+ECRLRD+TY+API VDI YTRG+ +V R+ + IGRMPIML+S+KCV
Sbjct: 172 EDDLEHHRSTITPNECRLRDMTYAAPIVVDIIYTRGNAKVKRTGIKIGRMPIMLKSNKCV 231

Query: 406 LRNKTE 411
           L  K +
Sbjct: 232 LAGKND 237



 Score = 77.4 bits (189), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 32/59 (54%), Positives = 47/59 (79%)

Query: 113 RDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           RDKW L+ +FLK KGLVK H+DS+++F++V++KK+++AN  + SD DP F L+Y DI V
Sbjct: 106 RDKWNLLPAFLKTKGLVKQHVDSYNHFVDVDLKKIIKANRFVRSDFDPKFLLEYTDIRV 164


>gi|198423468|ref|XP_002121670.1| PREDICTED: similar to polymerase (RNA) III (DNA directed) polypeptide
            B [Ciona intestinalis]
          Length = 1141

 Score =  381 bits (978), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 173/270 (64%), Positives = 215/270 (79%), Gaps = 10/270 (3%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQQ RIDTLMY LVY Q P+V+S+TI + N
Sbjct: 672  GLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQQQRIDTLMYLLVYPQAPLVKSRTIELIN 731

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNA IAVMSYSGYDIEDAL++N+AS+DRG+GRCLVYRN KC+LK+Y NQT D+
Sbjct: 732  FEKLPAGQNAIIAVMSYSGYDIEDALVLNRASVDRGYGRCLVYRNQKCILKRYANQTFDK 791

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLV----------NKSMPTISVSA 1082
            ++GP L A+TR+P++RH+ LD DGI+ PG ++  +Q ++                     
Sbjct: 792  VMGPALNAETREPIWRHQGLDADGIIMPGVKVESKQKIMCXLYXXXXXXXXXXXXXXXXX 851

Query: 1083 ISMATPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQ 1142
            +   +  Y+E P+SY+G V S +EKV+VSSN+E++ LIK+LLRQTRRPE+GDKFSSRHGQ
Sbjct: 852  LQGPSTSYQETPISYRGPVGSTIEKVMVSSNNEESSLIKILLRQTRRPELGDKFSSRHGQ 911

Query: 1143 KGVIGLIVEQEDMPFNESGICPDIIMNPHG 1172
            KGV GLIV+Q DMPFN+ GICPD+IMNPHG
Sbjct: 912  KGVTGLIVQQADMPFNQDGICPDVIMNPHG 941



 Score =  291 bits (744), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 136/191 (71%), Positives = 159/191 (83%)

Query: 1180 TEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1239
            T Y+E P+SY+G V S +EKV+VSSN+E++ LIK+LLRQTRRPE+GDKFSSRHGQKGV G
Sbjct: 857  TSYQETPISYRGPVGSTIEKVMVSSNNEESSLIKILLRQTRRPELGDKFSSRHGQKGVTG 916

Query: 1240 LIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTK 1299
            LIV+Q DMPFN+ GICPD+IMNPHGYPSRMTVGKL+ELL  KAG + G +  GTAFGG K
Sbjct: 917  LIVQQADMPFNQDGICPDVIMNPHGYPSRMTVGKLMELLGSKAGAIGGKFHYGTAFGGDK 976

Query: 1300 LVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPR 1359
            + D+ + L  +GYNY GKD   SGITGE+ EAYIY GPVYYQKLKHMV DK+HAR+RGPR
Sbjct: 977  VEDLSQVLTDNGYNYVGKDCLTSGITGESFEAYIYQGPVYYQKLKHMVLDKMHARARGPR 1036

Query: 1360 VVLTRQPTGRR 1370
             VLTRQPT  R
Sbjct: 1037 AVLTRQPTEGR 1047



 Score =  243 bits (620), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 118/204 (57%), Positives = 151/204 (74%), Gaps = 4/204 (1%)

Query: 132 HIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVNH 191
            +D  DY+ N    K M+    + S +    + ++      IAD  IPK +AAQFD+V H
Sbjct: 352 EVDDRDYYGN----KRMELAGGLISLLFEDLFKRFNSELKKIADLTIPKPRAAQFDVVRH 407

Query: 192 MRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKV 251
           MRQD IT +L  AI +GNW ++RFKMER+GVTQVL+RLSYIS LGMMTRI SQFEKTRKV
Sbjct: 408 MRQDLITTSLVIAISSGNWIVKRFKMERKGVTQVLTRLSYISALGMMTRIASQFEKTRKV 467

Query: 252 SGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAM 311
           SGPRSLQ SQWGMLCPSDTPEGEACGLVKNLALMTHIT + +E+   ++++N+G+E + M
Sbjct: 468 SGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITVDVEEEPTARLLFNLGVEDVYM 527

Query: 312 FNGEELSSPGVYLVFVNGILAGIT 335
            +GEE+ S   Y+VF+NG++ G+ 
Sbjct: 528 LSGEEIHSQLSYIVFLNGLVLGVV 551



 Score =  174 bits (440), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 86/139 (61%), Positives = 100/139 (71%), Gaps = 15/139 (10%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G + F+DFL  G +EYLDV+E ND  +A+ ES I    +THLEI PFTLLGVCAG     
Sbjct: 619 GLRSFEDFLRSGLVEYLDVSEENDCFVALDESYITHK-STHLEIEPFTLLGVCAG----- 672

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQQ RIDTLMY LVY Q P+V+
Sbjct: 673 ---------LIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQQQRIDTLMYLLVYPQAPLVK 723

Query: 808 SKTIRITNFHKLPAGKCQI 826
           S+TI + NF KLPAG+  I
Sbjct: 724 SRTIELINFEKLPAGQNAI 742



 Score =  112 bits (279), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 60/109 (55%), Positives = 73/109 (66%), Gaps = 12/109 (11%)

Query: 303 NIGIEHIAMFNGEELSS--PGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHE 360
           N+ I++I   N   LS   P  YL +++ I  G+         P++EESFN TR  TPHE
Sbjct: 53  NVDIKNIVKANKRVLSDADPNWYLEYLD-IHVGV---------PDVEESFNVTRAVTPHE 102

Query: 361 CRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNK 409
           CRLRD+TYSA ITVDIEYTRG QR++R  L IGRMPIML+SS CVL  K
Sbjct: 103 CRLRDMTYSASITVDIEYTRGQQRIIRKALPIGRMPIMLRSSNCVLTGK 151



 Score =  111 bits (277), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 52/98 (53%), Positives = 76/98 (77%), Gaps = 2/98 (2%)

Query: 439 KLRQKR--FQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDP 496
           K+R++R  +   +++  D+ RD+L++T +AHIPV +  +  KA+YLA+MIRR++L     
Sbjct: 291 KIRRQRPVWGAARQSKTDETRDWLNTTLLAHIPVTDWNYHAKAVYLALMIRRIILTQLGY 350

Query: 497 DMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELKE 534
             +DDRDYYGNKR+ELAG L+SL+FED+FKRFNSELK+
Sbjct: 351 LEVDDRDYYGNKRMELAGGLISLLFEDLFKRFNSELKK 388



 Score = 92.0 bits (227), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 40/64 (62%), Positives = 51/64 (79%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           I DKW L+  FLK KGLVK HIDSF+YF+NV+IK +++AN  + SD DP +YL+YLDIHV
Sbjct: 24  IEDKWLLLPEFLKVKGLVKQHIDSFNYFVNVDIKNIVKANKRVLSDADPNWYLEYLDIHV 83

Query: 172 GIAD 175
           G+ D
Sbjct: 84  GVPD 87


>gi|321471157|gb|EFX82130.1| hypothetical protein DAPPUDRAFT_316708 [Daphnia pulex]
          Length = 1135

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 168/268 (62%), Positives = 215/268 (80%), Gaps = 7/268 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG I  NQ+NRID L+YNLVY  +PMV+++TI + N
Sbjct: 669  GLIPYPHHNQSPRNTYQCAMGKQAMGTIACNQRNRIDGLLYNLVYPHKPMVKTRTIEMVN 728

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F  +PAGQNA +AVMSYSG+DIEDA ++NKASLDRG+GRC+VY+N+KCVLK+Y N T DR
Sbjct: 729  FENIPAGQNAMVAVMSYSGFDIEDATVLNKASLDRGYGRCIVYKNAKCVLKRYNNATSDR 788

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTI-------SVSAISM 1085
            + GP+++  T+KP ++H  +D DG    G+ +  +QVL+NK MPT+        V A + 
Sbjct: 789  VNGPMIDPVTKKPAWKHEIIDIDGFACVGQPVQPKQVLINKIMPTVPAVAVTPGVPAAAA 848

Query: 1086 ATPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV 1145
              PEY++VP++YKG +PSY+EKV+ SSN+E+A +IK+ LRQTRRPEIGDKFSSRHGQKGV
Sbjct: 849  PLPEYRDVPITYKGPIPSYVEKVMFSSNAEEANIIKIQLRQTRRPEIGDKFSSRHGQKGV 908

Query: 1146 IGLIVEQEDMPFNESGICPDIIMNPHGL 1173
              L+ EQED+PF E GICPD+IMNPHG 
Sbjct: 909  TALVAEQEDLPFTELGICPDVIMNPHGF 936



 Score =  308 bits (790), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 142/209 (67%), Positives = 171/209 (81%)

Query: 1164 PDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPE 1223
            P + + P        + EY++VP++YKG +PSY+EKV+ SSN+E+A +IK+ LRQTRRPE
Sbjct: 835  PAVAVTPGVPAAAAPLPEYRDVPITYKGPIPSYVEKVMFSSNAEEANIIKIQLRQTRRPE 894

Query: 1224 IGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAG 1283
            IGDKFSSRHGQKGV  L+ EQED+PF E GICPD+IMNPHG+PSRMTVGKLIELLAGKAG
Sbjct: 895  IGDKFSSRHGQKGVTALVAEQEDLPFTELGICPDVIMNPHGFPSRMTVGKLIELLAGKAG 954

Query: 1284 LMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKL 1343
            LMEG +  GTAFGG+K+ DV EEL++HG+NYQGK+   SG TGE L AYIY GPVYYQKL
Sbjct: 955  LMEGKFHYGTAFGGSKVQDVSEELMKHGFNYQGKECMTSGTTGEQLTAYIYFGPVYYQKL 1014

Query: 1344 KHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
            KHMV DK+HARS+GPR +LTRQPT  R +
Sbjct: 1015 KHMVMDKMHARSQGPRAILTRQPTEGRAR 1043



 Score =  258 bits (658), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 127/203 (62%), Positives = 156/203 (76%), Gaps = 4/203 (1%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVNHM 192
           +D  DY+ N   K+   A + I    + LF     ++   IADK IPK+KAAQFD++ H+
Sbjct: 350 VDDRDYYGN---KRCELAGSLISLLFEDLFKRMNFELK-SIADKNIPKVKAAQFDVIKHI 405

Query: 193 RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVS 252
           R DT+T  L  AI TGNWTI+RF+MERQGVTQ+L RLSYISGLGMMTR+NSQFEKTRKVS
Sbjct: 406 RTDTLTLGLENAIATGNWTIKRFRMERQGVTQMLCRLSYISGLGMMTRVNSQFEKTRKVS 465

Query: 253 GPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMF 312
           GPRSLQ SQWGMLCPSDTPEGE CGLVKNLALMTHITTE +E+ ++KI  N+G+E I +F
Sbjct: 466 GPRSLQPSQWGMLCPSDTPEGEGCGLVKNLALMTHITTEAEEEPIIKIAQNMGVEDINLF 525

Query: 313 NGEELSSPGVYLVFVNGILAGIT 335
           +GEE+S P +Y VF+NG + G+ 
Sbjct: 526 SGEEISDPSIYTVFLNGNILGLV 548



 Score =  175 bits (444), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 89/152 (58%), Positives = 107/152 (70%), Gaps = 18/152 (11%)

Query: 675 QPRPTFLNMH-QFLG--FKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEI 731
           Q RP     H Q L   F+ F+DF+++G +EYLDVNE NDS+IAV ES I    TTHLEI
Sbjct: 600 QGRPAVTEHHMQELADSFRTFEDFIHDGLVEYLDVNEENDSNIAVYESDINEE-TTHLEI 658

Query: 732 APFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRI 791
            PFTLLGVCAG              L+PYPHHNQ+PRNTYQCAMGKQAMG I  NQ+NRI
Sbjct: 659 EPFTLLGVCAG--------------LIPYPHHNQSPRNTYQCAMGKQAMGTIACNQRNRI 704

Query: 792 DTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
           D L+YNLVY  +PMV+++TI + NF  +PAG+
Sbjct: 705 DGLLYNLVYPHKPMVKTRTIEMVNFENIPAGQ 736



 Score =  134 bits (336), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 65/97 (67%), Positives = 79/97 (81%), Gaps = 1/97 (1%)

Query: 438 KKLRQKRF-QTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDP 496
           KKLRQKRF    KKTP+D+AR+ L+ T +AH+PV+N  FK KAMYLA+MIRR++ A  DP
Sbjct: 288 KKLRQKRFFGGPKKTPLDEAREALAETVLAHVPVLNFNFKAKAMYLALMIRRVIQAERDP 347

Query: 497 DMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
             +DDRDYYGNKR ELAGSL+SL+FED+FKR N ELK
Sbjct: 348 TSVDDRDYYGNKRCELAGSLISLLFEDLFKRMNFELK 384



 Score =  102 bits (255), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 54/106 (50%), Positives = 70/106 (66%), Gaps = 12/106 (11%)

Query: 303 NIGIEHIAMFNGEELS--SPGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHE 360
           N+ I+ I   N + +S   P  YL +++            V KP+  E  +++R TTPHE
Sbjct: 51  NVEIKKIVKANEKVISFADPTFYLKYLD----------IHVGKPDSIEDMHHSRLTTPHE 100

Query: 361 CRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVL 406
           CRLRD+TYSAP+TVDIEYTRG QRVVR+ + IGRMPIML+SS C L
Sbjct: 101 CRLRDMTYSAPVTVDIEYTRGQQRVVRNGIAIGRMPIMLRSSNCTL 146



 Score = 96.7 bits (239), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 44/66 (66%), Positives = 53/66 (80%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           + +KWKLV +FLK KGLVK HIDS++YFINVEIKK+++AN  + S  DP FYLKYLDIHV
Sbjct: 22  VEEKWKLVPAFLKTKGLVKQHIDSYNYFINVEIKKIVKANEKVISFADPTFYLKYLDIHV 81

Query: 172 GIADKI 177
           G  D I
Sbjct: 82  GKPDSI 87


>gi|158297007|ref|XP_317312.4| AGAP008151-PA [Anopheles gambiae str. PEST]
 gi|157014987|gb|EAA12689.4| AGAP008151-PA [Anopheles gambiae str. PEST]
          Length = 1089

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 175/261 (67%), Positives = 213/261 (81%), Gaps = 8/261 (3%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GLVPYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMYN+VY Q PMV S+TI +TN
Sbjct: 640  GLVPYPHHNQSPRNTYQCAMGKQAMGIIGYNQKNRIDTLMYNIVYPQSPMVRSRTIELTN 699

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNAT+AVMSYSGYDIEDALI+NKAS+DRG+GRCLVY+NSKC +K+Y NQT DR
Sbjct: 700  FDKLPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTIKRYSNQTFDR 759

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKE 1092
            I+GP+ +  T K + +H  LD DGIV+PGE++  +Q +VNK MP +  S   +   E  +
Sbjct: 760  IMGPMKDGVTGKIIAKHECLDTDGIVSPGERLTCKQTMVNKEMPAVK-SNNPIEQKESGQ 818

Query: 1093 VPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQ 1152
             P++Y         +VLVS+N+E+ FL+K+LLRQTRRPEIGDKFSSRHGQKGV GLIVEQ
Sbjct: 819  QPIAYSA-------RVLVSTNNEEEFLVKILLRQTRRPEIGDKFSSRHGQKGVTGLIVEQ 871

Query: 1153 EDMPFNESGICPDIIMNPHGL 1173
            ED+PFN+ G+ PD++MNPHG 
Sbjct: 872  EDLPFNDYGMSPDMVMNPHGF 892



 Score =  289 bits (739), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 143/241 (59%), Positives = 177/241 (73%), Gaps = 16/241 (6%)

Query: 1142 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPV---------SYKGS 1192
            + GV G I+ + +       +  D I++P     C +    KE+P             G 
Sbjct: 765  KDGVTGKIIAKHEC------LDTDGIVSPGERLTCKQTMVNKEMPAVKSNNPIEQKESGQ 818

Query: 1193 VP-SYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNE 1251
             P +Y  +VLVS+N+E+ FL+K+LLRQTRRPEIGDKFSSRHGQKGV GLIVEQED+PFN+
Sbjct: 819  QPIAYSARVLVSTNNEEEFLVKILLRQTRRPEIGDKFSSRHGQKGVTGLIVEQEDLPFND 878

Query: 1252 SGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHG 1311
             G+ PD++MNPHG+PSRMTVGK +ELL  KAG++EG +  GTAFGG+K  D+Q+EL  HG
Sbjct: 879  YGMSPDMVMNPHGFPSRMTVGKTLELLGSKAGVLEGKFHYGTAFGGSKCSDLQDELFNHG 938

Query: 1312 YNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRW 1371
            +NY GKD+FYSGITGE LE YIYSGPVYYQKLKHMVQDK+HAR+RGPR VLTRQPT  R 
Sbjct: 939  FNYLGKDVFYSGITGEPLEVYIYSGPVYYQKLKHMVQDKMHARARGPRAVLTRQPTQGRS 998

Query: 1372 K 1372
            +
Sbjct: 999  R 999



 Score =  258 bits (658), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 129/216 (59%), Positives = 162/216 (75%), Gaps = 4/216 (1%)

Query: 128 LVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFD 187
           L +  +D  DY+ N   K+L  A + +    + LF     ++ + IADK IPKIKAAQFD
Sbjct: 341 LDRSAVDDRDYYGN---KRLELAGSLLSLMFEDLFKRFNWELKM-IADKNIPKIKAAQFD 396

Query: 188 IVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEK 247
           +  HMR+  IT  L  AI TGNWTI+RFKMER GVTQVLSRLSYIS LGMMTR+NSQFEK
Sbjct: 397 VGKHMREALITAGLETAISTGNWTIKRFKMERAGVTQVLSRLSYISALGMMTRVNSQFEK 456

Query: 248 TRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIE 307
           TRKVSGPRSLQ SQWGMLCPSDTPEGEACGLVKNLALMTHITTE DE+ ++++ YN G+E
Sbjct: 457 TRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVDEEPVIRLAYNAGVE 516

Query: 308 HIAMFNGEELSSPGVYLVFVNGILAGITCHHKEVCK 343
            I +  GE +++P V++VF+NG + G+T  ++ + +
Sbjct: 517 DIRLLGGETINNPKVFMVFINGNILGVTIAYRRLVE 552



 Score =  176 bits (445), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 86/125 (68%), Positives = 93/125 (74%), Gaps = 14/125 (11%)

Query: 699 GKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLV 758
           G+  YLDVNE NDS IA  E  I P  TTHLEI PFTLLGVCAG              LV
Sbjct: 597 GRPLYLDVNEENDSFIAYQERDIDPEKTTHLEIEPFTLLGVCAG--------------LV 642

Query: 759 PYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHK 818
           PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMYN+VY Q PMV S+TI +TNF K
Sbjct: 643 PYPHHNQSPRNTYQCAMGKQAMGIIGYNQKNRIDTLMYNIVYPQSPMVRSRTIELTNFDK 702

Query: 819 LPAGK 823
           LPAG+
Sbjct: 703 LPAGQ 707



 Score =  124 bits (310), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 65/115 (56%), Positives = 79/115 (68%), Gaps = 12/115 (10%)

Query: 303 NIGIEHIAMFNGEELSS--PGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHE 360
           N+ I+ I   N E  S   P  YL ++N            V KP++EE FN T+ TTPHE
Sbjct: 46  NVDIKKIVQANQEVKSDADPCFYLKYLN----------VHVGKPDVEEGFNNTKSTTPHE 95

Query: 361 CRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKTEYTSS 415
           CRLRD+TYSAPITVDIEYTRG+QRVVR+ L+IGRMPIML+SS CVL  K++Y  S
Sbjct: 96  CRLRDMTYSAPITVDIEYTRGTQRVVRNGLLIGRMPIMLRSSNCVLTGKSDYQLS 150



 Score =  115 bits (289), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 59/98 (60%), Positives = 74/98 (75%), Gaps = 3/98 (3%)

Query: 439 KLRQKRFQTYKKTPV---DDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSD 495
           KL  KRF T         D+ARD L++T +AH+PV +  F++KA+Y+A+MIRR++ A  D
Sbjct: 283 KLIAKRFTTAATKYKTTADEARDLLATTILAHVPVPSFNFQVKAIYVALMIRRVMAAELD 342

Query: 496 PDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
              +DDRDYYGNKRLELAGSLLSLMFED+FKRFN ELK
Sbjct: 343 RSAVDDRDYYGNKRLELAGSLLSLMFEDLFKRFNWELK 380



 Score = 71.6 bits (174), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/44 (68%), Positives = 37/44 (84%)

Query: 132 HIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIAD 175
           HIDSF+YFINV+IKK++QAN  + SD DP FYLKYL++HVG  D
Sbjct: 37  HIDSFNYFINVDIKKIVQANQEVKSDADPCFYLKYLNVHVGKPD 80


>gi|348551951|ref|XP_003461792.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Cavia
            porcellus]
          Length = 1102

 Score =  374 bits (961), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 170/240 (70%), Positives = 207/240 (86%), Gaps = 4/240 (1%)

Query: 938  GCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGQNATIAVMSYSGYDIEDA 997
            G IGYNQ+NRIDTLMY L Y Q+PMV++KTI + +F KLPAGQNAT+AVMSYSGYDIEDA
Sbjct: 664  GTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIDFEKLPAGQNATVAVMSYSGYDIEDA 723

Query: 998  LIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRILGPLLEADTRKPVYRHRALDQDGI 1057
            L++NKASLDRGFGRCLVY+N+KC LK+Y NQT D+++GP+L+A TRKP++RH  LD DGI
Sbjct: 724  LVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLDAATRKPIWRHEILDADGI 783

Query: 1058 VAPGEQICERQVLVNKSMPTISVSAI----SMATPEYKEVPVSYKGSVPSYLEKVLVSSN 1113
             +PGE++  +QVLVNKSMPT++   +    +   P+YK+VP++YKG+  SY+EKV++SSN
Sbjct: 784  CSPGEKVANKQVLVNKSMPTVTQIPLEGSGAAQQPQYKDVPITYKGATDSYIEKVMISSN 843

Query: 1114 SEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            +EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GLIV QEDMPF +SGICPDIIMNPHG 
Sbjct: 844  AEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGF 903



 Score =  322 bits (824), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 152/207 (73%), Positives = 175/207 (84%)

Query: 1164 PDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPE 1223
            P +   P    G  +  +YK+VP++YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPE
Sbjct: 802  PTVTQIPLEGSGAAQQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPE 861

Query: 1224 IGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAG 1283
            IGDKFSSRHGQKGV GLIV QEDMPF +SGICPDIIMNPHG+PSRMTVGKLIELLAGKAG
Sbjct: 862  IGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAG 921

Query: 1284 LMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKL 1343
            +++G +  GTAFGG+K+ DV E+L+RHGYNY GKD   SGITGE LEAYIY GPVYYQKL
Sbjct: 922  VLDGRFHYGTAFGGSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKL 981

Query: 1344 KHMVQDKIHARSRGPRVVLTRQPTGRR 1370
            KHMV DK+HAR+RGPR VLTRQPT  R
Sbjct: 982  KHMVLDKMHARARGPRAVLTRQPTEGR 1008



 Score =  258 bits (658), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 124/209 (59%), Positives = 160/209 (76%), Gaps = 4/209 (1%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVNHM 192
           +D  DY+ N  ++   Q  + ++ D+    + K+      IAD++IPK +AAQFD+V HM
Sbjct: 351 VDDRDYYGNKRLELAGQLLSLLFEDL----FKKFNSEMKKIADQVIPKQRAAQFDVVKHM 406

Query: 193 RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVS 252
           RQD ITN +  AI TGNW+++RFKM+RQGVTQVLSRLSYIS LGMMTRI+SQFEKTRKVS
Sbjct: 407 RQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVS 466

Query: 253 GPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMF 312
           GPRSLQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT+ ++  ++K+  N+G+E +   
Sbjct: 467 GPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNFL 526

Query: 313 NGEELSSPGVYLVFVNGILAGITCHHKEV 341
            GEELS P V+LVF+NG + G+   H+++
Sbjct: 527 CGEELSYPNVFLVFLNGNILGVIRDHQKL 555



 Score =  115 bits (288), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/111 (56%), Positives = 79/111 (71%), Gaps = 14/111 (12%)

Query: 303 NIGIEHIAMFNGEELSS---PGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPH 359
           N+ I+ I   N E+++S   P  YL ++N I  G+         P++EESFN TR  +PH
Sbjct: 52  NVEIKKIMKAN-EKVTSDADPMWYLKYLN-IYVGL---------PDVEESFNVTRPVSPH 100

Query: 360 ECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
           ECRLRD+TYSAPITVDIEYTRGSQR++R+ L IGRMPIML+SS CVL  KT
Sbjct: 101 ECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKT 151



 Score =  112 bits (281), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 70/86 (81%), Gaps = 1/86 (1%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           KKT +++AR+ L+ST + H+PV    F+ K +Y AVM+RR++LA  D + +DDRDYYGNK
Sbjct: 302 KKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQGD-NKVDDRDYYGNK 360

Query: 509 RLELAGSLLSLMFEDVFKRFNSELKE 534
           RLELAG LLSL+FED+FK+FNSE+K+
Sbjct: 361 RLELAGQLLSLLFEDLFKKFNSEMKK 386



 Score = 96.3 bits (238), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 41/64 (64%), Positives = 55/64 (85%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           + +KW+L+ +FLK KGLVK HIDSF+YFINVEIKK+M+AN  + SD DP++YLKYL+I+V
Sbjct: 23  VEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMWYLKYLNIYV 82

Query: 172 GIAD 175
           G+ D
Sbjct: 83  GLPD 86



 Score = 86.7 bits (213), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 71/217 (32%), Positives = 96/217 (44%), Gaps = 61/217 (28%)

Query: 621 FLFFLGGGGILPSIQRQTTCLLTLILFSLNGDGKRGARNSQQYCD-CPDGYSSG---CQP 676
           FL FL G  IL  I+     + T  L    G        S    D C    S G   C+P
Sbjct: 537 FLVFLNGN-ILGVIRDHQKLVHTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRP 595

Query: 677 -------RPTFLNMHQ---FLGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVT 726
                  +P   N H      G++ F+DFL+E  +EYLDVNE ND +IA+ E  +     
Sbjct: 596 YIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTVN---- 651

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
                            ++L +           +P+ N+               G IGYN
Sbjct: 652 -----------------KMLSF----------VFPNINE---------------GTIGYN 669

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
           Q+NRIDTLMY L Y Q+PMV++KTI + +F KLPAG+
Sbjct: 670 QRNRIDTLMYLLAYPQKPMVKTKTIELIDFEKLPAGQ 706


>gi|25144348|ref|NP_498192.2| Protein RPC-2 [Caenorhabditis elegans]
 gi|351060666|emb|CCD68383.1| Protein RPC-2 [Caenorhabditis elegans]
          Length = 1154

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 172/272 (63%), Positives = 215/272 (79%), Gaps = 12/272 (4%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG I YNQQ RID++MY L Y QRP+V+SKTI +TN
Sbjct: 683  GLIPYPHHNQSPRNTYQCAMGKQAMGTIAYNQQKRIDSIMYLLCYPQRPLVKSKTIELTN 742

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAG N  IAVMSYSGYDIEDAL++NKASLDRG+GRCLVY++ K   K+YPNQT DR
Sbjct: 743  FEKLPAGANGIIAVMSYSGYDIEDALVLNKASLDRGYGRCLVYKHVKGTAKKYPNQTFDR 802

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTI----------SVSA 1082
            +LGP L+ +TRKP+++H+ LDQ+GIV  G +I  +Q ++NK MP +          S + 
Sbjct: 803  LLGPALDPNTRKPIFKHKNLDQEGIVFAGARIMPKQTIINKHMPVVSGESGPGASASANT 862

Query: 1083 ISMA--TPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRH 1140
            I +A    +YK+V ++YK   PSY E+VL++ N ++A L K+LLRQTRRPE+GDKFSSRH
Sbjct: 863  IGIAGRQVDYKDVSITYKTPTPSYAERVLLTYNEDEAHLFKVLLRQTRRPELGDKFSSRH 922

Query: 1141 GQKGVIGLIVEQEDMPFNESGICPDIIMNPHG 1172
            GQKGV GLI +QEDMPFN+ G+ PD+IMNPHG
Sbjct: 923  GQKGVCGLIAQQEDMPFNDLGMVPDMIMNPHG 954



 Score =  284 bits (727), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 137/214 (64%), Positives = 165/214 (77%), Gaps = 2/214 (0%)

Query: 1159 ESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQ 1218
            ESG       N  G+ G  R  +YK+V ++YK   PSY E+VL++ N ++A L K+LLRQ
Sbjct: 851  ESGPGASASANTIGIAG--RQVDYKDVSITYKTPTPSYAERVLLTYNEDEAHLFKVLLRQ 908

Query: 1219 TRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELL 1278
            TRRPE+GDKFSSRHGQKGV GLI +QEDMPFN+ G+ PD+IMNPHGYPSRMTVGKL+ELL
Sbjct: 909  TRRPELGDKFSSRHGQKGVCGLIAQQEDMPFNDLGMVPDMIMNPHGYPSRMTVGKLMELL 968

Query: 1279 AGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPV 1338
            +GKAG++ G Y  GTAFGG ++ DV EEL   GYNY GKD+  SGITG+ L AYIY GP+
Sbjct: 969  SGKAGVVNGTYHYGTAFGGDQVKDVCEELAACGYNYMGKDMLTSGITGQPLSAYIYFGPI 1028

Query: 1339 YYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
            YYQKLKHMV DK+HAR+RGPR  LTRQPT  R +
Sbjct: 1029 YYQKLKHMVLDKMHARARGPRAALTRQPTEGRSR 1062



 Score =  228 bits (582), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 119/227 (52%), Positives = 154/227 (67%), Gaps = 9/227 (3%)

Query: 117 KLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADK 176
           +L+ + L E GL     D  D++ N  ++      + ++ DV    + ++      IAD 
Sbjct: 353 RLIQTELGENGL-----DDRDFYGNKRLELAGSLLSLLFEDV----FKRFNSELKRIADN 403

Query: 177 IIPKIKAAQFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLG 236
            + K  AA  DIV HMRQD ITN +  A+ TGNW I+RF+MER GVTQVLSRLSYIS LG
Sbjct: 404 ALMKTMAAPLDIVKHMRQDMITNTIVNAMSTGNWIIKRFRMERLGVTQVLSRLSYISALG 463

Query: 237 MMTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKN 296
           MMTRINS FEKTRKVSGPRSLQ SQWGMLCPSDTPEGEACGLVKNLAL++HITT++DEK 
Sbjct: 464 MMTRINSTFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALISHITTDSDEKP 523

Query: 297 MLKIMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAGITCHHKEVCK 343
           +L+++ N G+E +   +   ++ P   L+F+NG+L G     + V K
Sbjct: 524 VLRLLLNSGVEDLHNVHFSHVNKPENTLIFLNGVLIGTAVDPERVVK 570



 Score =  172 bits (436), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 85/131 (64%), Positives = 97/131 (74%), Gaps = 15/131 (11%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKR 751
           F+DF+ +G +EYLDVNE ND+ IAV    I P  TTHLEI PFTLLGVCAG         
Sbjct: 634 FEDFVDDGIVEYLDVNEMNDALIAVYGREIGPE-TTHLEIEPFTLLGVCAG--------- 683

Query: 752 FHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTI 811
                L+PYPHHNQ+PRNTYQCAMGKQAMG I YNQQ RID++MY L Y QRP+V+SKTI
Sbjct: 684 -----LIPYPHHNQSPRNTYQCAMGKQAMGTIAYNQQKRIDSIMYLLCYPQRPLVKSKTI 738

Query: 812 RITNFHKLPAG 822
            +TNF KLPAG
Sbjct: 739 ELTNFEKLPAG 749



 Score =  105 bits (262), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 51/79 (64%), Positives = 62/79 (78%)

Query: 455 DARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAG 514
           +A DFLS++ I HI   +  FKMKA+YL +M RR++      + LDDRD+YGNKRLELAG
Sbjct: 320 EAVDFLSNSMITHIACPDGNFKMKAIYLGLMTRRLIQTELGENGLDDRDFYGNKRLELAG 379

Query: 515 SLLSLMFEDVFKRFNSELK 533
           SLLSL+FEDVFKRFNSELK
Sbjct: 380 SLLSLLFEDVFKRFNSELK 398



 Score =  104 bits (259), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 48/72 (66%), Positives = 58/72 (80%), Gaps = 1/72 (1%)

Query: 341 VCKPEIEESFNYTR-QTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIML 399
           + KP  EE  N T  + TP ECRLRD+TYSAPI+VDIEYTRG+QRV + DL+IGRMPIML
Sbjct: 84  IGKPSSEEGLNMTHDKITPQECRLRDMTYSAPISVDIEYTRGNQRVFKKDLIIGRMPIML 143

Query: 400 QSSKCVLRNKTE 411
           +SSKC+LR+  E
Sbjct: 144 RSSKCILRDLAE 155



 Score = 77.4 bits (189), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 39/86 (45%), Positives = 54/86 (62%), Gaps = 2/86 (2%)

Query: 87  TVKAVHGTYLTMVTDETSKLKDSPEIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKK 146
           T+  V+G     +  E  K +    + DKW LV +FLK +GLVK H+ SFD+F+  EI+ 
Sbjct: 2   TIGQVNGR--ARIKSECGKDQKCMPLEDKWLLVPAFLKVRGLVKQHLVSFDHFVQEEIRS 59

Query: 147 LMQANANIYSDVDPLFYLKYLDIHVG 172
           +M +N  I SD +P FYLKYLDI +G
Sbjct: 60  IMLSNQKITSDANPNFYLKYLDIRIG 85


>gi|307204008|gb|EFN82912.1| DNA-directed RNA polymerase III subunit RPC2 [Harpegnathos saltator]
          Length = 1081

 Score =  371 bits (953), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 166/266 (62%), Positives = 221/266 (83%), Gaps = 5/266 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMG+QA G IGYNQ+ R+DT+MYNLVY Q P+V +KT  +  
Sbjct: 605  GLIPYPHHNQSPRNTYQCAMGRQAAGTIGYNQRKRMDTVMYNLVYPQAPIVRTKTSEMIK 664

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            +++LPAG+NA +A+MSY GYDIEDAL++N+ASLDRG+GRCL+YR++K VLK+YPNQT+DR
Sbjct: 665  YNELPAGENAIVAIMSYGGYDIEDALVVNRASLDRGYGRCLIYRSTKAVLKRYPNQTYDR 724

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAI---SMATP- 1088
            I+GP L+++T K  ++H  LD DGI  PGE++ +++VLVNKS+P+ S+  +   S A+P 
Sbjct: 725  IMGPSLDSNTNKVAWKHDILDADGIAMPGERVEDKKVLVNKSVPSQSIDRVNTGSDASPK 784

Query: 1089 -EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
             +Y++  + YKG  P+Y+E+ L++SN++D+FLIK+LLRQTRRPEIGDK SSRHGQKGVIG
Sbjct: 785  TQYRDAEIYYKGLEPAYVEQSLLTSNADDSFLIKLLLRQTRRPEIGDKLSSRHGQKGVIG 844

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
             IV  ED+PFN+ GI PDIIMNPHG 
Sbjct: 845  SIVNPEDLPFNDQGIVPDIIMNPHGF 870



 Score =  296 bits (758), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 133/193 (68%), Positives = 166/193 (86%)

Query: 1180 TEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1239
            T+Y++  + YKG  P+Y+E+ L++SN++D+FLIK+LLRQTRRPEIGDK SSRHGQKGVIG
Sbjct: 785  TQYRDAEIYYKGLEPAYVEQSLLTSNADDSFLIKLLLRQTRRPEIGDKLSSRHGQKGVIG 844

Query: 1240 LIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTK 1299
             IV  ED+PFN+ GI PDIIMNPHG+PSRMTVGKLIE+LAGK G++ G + + TAFGG+K
Sbjct: 845  SIVNPEDLPFNDQGIVPDIIMNPHGFPSRMTVGKLIEILAGKVGILNGEFHDSTAFGGSK 904

Query: 1300 LVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPR 1359
            + D+ E++ +HGYNY GKD FYSGITGE +EAYIY+G VYYQ+LKHMVQDKIHAR++GPR
Sbjct: 905  VDDLSEQMQKHGYNYLGKDCFYSGITGEPMEAYIYTGTVYYQRLKHMVQDKIHARAKGPR 964

Query: 1360 VVLTRQPTGRRWK 1372
            VV+TRQPT  R K
Sbjct: 965  VVMTRQPTEGRSK 977



 Score =  236 bits (602), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 110/169 (65%), Positives = 134/169 (79%)

Query: 173 IADKIIPKIKAAQFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYI 232
           IADK IPKIKAAQFDIV HMRQD ITN L  AI TGNW I+RFKMERQG TQVLSRLSYI
Sbjct: 322 IADKNIPKIKAAQFDIVKHMRQDQITNGLLFAISTGNWKIKRFKMERQGATQVLSRLSYI 381

Query: 233 SGLGMMTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTEN 292
           S LGMMTR++SQFEKTR+VSGPRSL  SQWGMLCP DTPEGE+CGLVKNLALM HITT+ 
Sbjct: 382 SALGMMTRVHSQFEKTRQVSGPRSLHLSQWGMLCPCDTPEGESCGLVKNLALMAHITTDE 441

Query: 293 DEKNMLKIMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAGITCHHKEV 341
            E ++  ++  + ++ I     +E++    +LV +NG++ G+T H+K++
Sbjct: 442 PEDHIAWLLSTLDMQEIQSLGSQEINHKDEWLVLLNGVIQGVTSHYKKL 490



 Score =  158 bits (400), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 77/136 (56%), Positives = 97/136 (71%), Gaps = 15/136 (11%)

Query: 691 RFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNK 750
           +F+DFL  G IEYLDVNE ND  IA+ E+ I+   TTH+EI  FT+LGVCAG        
Sbjct: 555 KFEDFLQTGMIEYLDVNEENDVLIALDENEIQ-AETTHMEIETFTILGVCAG-------- 605

Query: 751 RFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKT 810
                 L+PYPHHNQ+PRNTYQCAMG+QA G IGYNQ+ R+DT+MYNLVY Q P+V +KT
Sbjct: 606 ------LIPYPHHNQSPRNTYQCAMGRQAAGTIGYNQRKRMDTVMYNLVYPQAPIVRTKT 659

Query: 811 IRITNFHKLPAGKCQI 826
             +  +++LPAG+  I
Sbjct: 660 SEMIKYNELPAGENAI 675



 Score =  106 bits (265), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 45/82 (54%), Positives = 67/82 (81%)

Query: 453 VDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLEL 512
            ++ +D L++  ++H+PV N  FK+K ++LA M+R++++A S+  +LDDRD+ GNKRLE+
Sbjct: 240 ANEMKDVLATNVLSHVPVKNFSFKLKGIHLAFMVRKVIMAQSNKKLLDDRDFVGNKRLEV 299

Query: 513 AGSLLSLMFEDVFKRFNSELKE 534
           AGSLLSLMFED+FKRFN ELK+
Sbjct: 300 AGSLLSLMFEDLFKRFNWELKQ 321



 Score = 92.8 bits (229), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 41/77 (53%), Positives = 58/77 (75%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQ 400
           + +P  +ES N  R+  PHECRLRDLTY+API VDIEY RG+Q ++++++VIGRMPIML+
Sbjct: 23  IGEPIFDESLNDIRKLYPHECRLRDLTYAAPIIVDIEYIRGNQPIIKNNIVIGRMPIMLR 82

Query: 401 SSKCVLRNKTEYTSSSR 417
           S+ C L   T +  S++
Sbjct: 83  SANCRLTGLTAHELSTK 99


>gi|308497698|ref|XP_003111036.1| hypothetical protein CRE_04747 [Caenorhabditis remanei]
 gi|308242916|gb|EFO86868.1| hypothetical protein CRE_04747 [Caenorhabditis remanei]
          Length = 1154

 Score =  371 bits (952), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 172/272 (63%), Positives = 215/272 (79%), Gaps = 12/272 (4%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG I YNQQ RID++MY L Y QRP+V+SKTI +TN
Sbjct: 683  GLIPYPHHNQSPRNTYQCAMGKQAMGTIAYNQQKRIDSIMYLLCYPQRPLVKSKTIELTN 742

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAG N  IAVMSYSGYDIEDAL++NKASLDRG+GRCLVY++ K  +++YPNQT DR
Sbjct: 743  FEKLPAGANGIIAVMSYSGYDIEDALVLNKASLDRGYGRCLVYKHVKGTVRKYPNQTFDR 802

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTI----------SVSA 1082
            +LGP L+ +TR P+ +H+ LDQ+GIV  G +I  +Q ++NK MP +          S + 
Sbjct: 803  LLGPALDPNTRLPISKHKNLDQEGIVFAGARILPKQTIINKHMPVVSGESGPGPSASANT 862

Query: 1083 ISMA--TPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRH 1140
            I +A    +YK+V +SYK   PSY E+VL++ N ++A LIK+LLRQTRRPE+GDKFSSRH
Sbjct: 863  IGIAGRQVDYKDVSISYKTPTPSYAERVLLTYNEDEAHLIKVLLRQTRRPELGDKFSSRH 922

Query: 1141 GQKGVIGLIVEQEDMPFNESGICPDIIMNPHG 1172
            GQKGV GLI +QEDMPFN+ G+ PD+IMNPHG
Sbjct: 923  GQKGVCGLIAQQEDMPFNDLGMVPDMIMNPHG 954



 Score =  293 bits (751), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 141/214 (65%), Positives = 168/214 (78%), Gaps = 2/214 (0%)

Query: 1159 ESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQ 1218
            ESG  P    N  G+ G  R  +YK+V +SYK   PSY E+VL++ N ++A LIK+LLRQ
Sbjct: 851  ESGPGPSASANTIGIAG--RQVDYKDVSISYKTPTPSYAERVLLTYNEDEAHLIKVLLRQ 908

Query: 1219 TRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELL 1278
            TRRPE+GDKFSSRHGQKGV GLI +QEDMPFN+ G+ PD+IMNPHGYPSRMTVGKL+ELL
Sbjct: 909  TRRPELGDKFSSRHGQKGVCGLIAQQEDMPFNDLGMVPDMIMNPHGYPSRMTVGKLMELL 968

Query: 1279 AGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPV 1338
            +GKAG+M G Y  GTAFGG ++ DV EEL   GYNY GKD+  SGITG++L AYIY GP+
Sbjct: 969  SGKAGVMNGTYHYGTAFGGDQVKDVCEELAARGYNYMGKDMLTSGITGQSLSAYIYFGPI 1028

Query: 1339 YYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
            YYQKLKHMV DK+HAR+RGPR  LTRQPT  R +
Sbjct: 1029 YYQKLKHMVLDKMHARARGPRAALTRQPTEGRSR 1062



 Score =  227 bits (578), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 114/212 (53%), Positives = 147/212 (69%), Gaps = 4/212 (1%)

Query: 132 HIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVNH 191
            +D  D++ N  ++      A ++ DV    + ++      IAD  + K  AA  DIV H
Sbjct: 363 ELDDRDFYGNKRLELAGSLLALLFEDV----FKRFNSELKRIADNALMKTMAAPLDIVKH 418

Query: 192 MRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKV 251
           MRQD ITN +  A+ TGNW I+RF+MER GVTQVLSRLSYIS LGMMTRINS FEKTRKV
Sbjct: 419 MRQDMITNTIVNAMSTGNWIIKRFRMERLGVTQVLSRLSYISALGMMTRINSTFEKTRKV 478

Query: 252 SGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAM 311
           SGPRSLQ SQWGMLCPSDTPEGEACGLVKNLAL++HITT++DEK +L+++ N G+E +  
Sbjct: 479 SGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALISHITTDSDEKPVLRLLLNSGVEDLHN 538

Query: 312 FNGEELSSPGVYLVFVNGILAGITCHHKEVCK 343
            +   ++ P   L+F+NG+L G     + V +
Sbjct: 539 VHFSHVNKPENTLIFLNGVLIGTAVDPERVVR 570



 Score =  176 bits (446), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 87/135 (64%), Positives = 100/135 (74%), Gaps = 15/135 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G + F+DF+ +G +EYLDVNE ND+ IAV E  I P  TTHLEI PFTLLGVCAG     
Sbjct: 630 GKRIFEDFVDDGIVEYLDVNEMNDALIAVYEKEIGPE-TTHLEIEPFTLLGVCAG----- 683

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQAMG I YNQQ RID++MY L Y QRP+V+
Sbjct: 684 ---------LIPYPHHNQSPRNTYQCAMGKQAMGTIAYNQQKRIDSIMYLLCYPQRPLVK 734

Query: 808 SKTIRITNFHKLPAG 822
           SKTI +TNF KLPAG
Sbjct: 735 SKTIELTNFEKLPAG 749



 Score =  104 bits (260), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 50/79 (63%), Positives = 62/79 (78%)

Query: 455 DARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAG 514
           +A DFLS++ I HI   +  FKMKA+YL +M RR++      + LDDRD+YGNKRLELAG
Sbjct: 320 EAVDFLSNSMITHIACPDGNFKMKAIYLGLMTRRLIQTELGENELDDRDFYGNKRLELAG 379

Query: 515 SLLSLMFEDVFKRFNSELK 533
           SLL+L+FEDVFKRFNSELK
Sbjct: 380 SLLALLFEDVFKRFNSELK 398



 Score =  103 bits (256), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 57/112 (50%), Positives = 72/112 (64%), Gaps = 13/112 (11%)

Query: 303 NIGIEHIAMFNGEELS--SPGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTR-QTTPH 359
           NI I +I   N +  S  +P  YL +++            V  P  EE  N T  + TP 
Sbjct: 54  NIEIRNIMQSNQKITSDANPNFYLKYLD----------IRVGNPSSEEGLNMTHDKITPQ 103

Query: 360 ECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKTE 411
           ECRLRD+TYSAPI+VDIEYTRG+QRV + DL+IGRMPIML+SSKC+LR+  E
Sbjct: 104 ECRLRDMTYSAPISVDIEYTRGNQRVFKKDLIIGRMPIMLRSSKCILRDLAE 155



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/74 (52%), Positives = 52/74 (70%)

Query: 99  VTDETSKLKDSPEIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDV 158
           +  E  K +    + DKW LV +FLK +GLVK H+ SFD+F+N+EI+ +MQ+N  I SD 
Sbjct: 12  IKSECGKDQKCMPLEDKWLLVPAFLKVRGLVKQHLVSFDHFVNIEIRNIMQSNQKITSDA 71

Query: 159 DPLFYLKYLDIHVG 172
           +P FYLKYLDI VG
Sbjct: 72  NPNFYLKYLDIRVG 85


>gi|268563827|ref|XP_002647022.1| Hypothetical protein CBG24045 [Caenorhabditis briggsae]
          Length = 1078

 Score =  368 bits (944), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 168/270 (62%), Positives = 212/270 (78%), Gaps = 10/270 (3%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG I YNQQ RID++MY L Y QRP+V+SKTI +TN
Sbjct: 596  GLIPYPHHNQSPRNTYQCAMGKQAMGTIAYNQQKRIDSIMYLLCYPQRPLVKSKTIELTN 655

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAG N  IAVMSYSGYDIEDAL++NKASLDRG+GRCLVY++ K   K+YPNQT+DR
Sbjct: 656  FEKLPAGANGIIAVMSYSGYDIEDALVLNKASLDRGYGRCLVYKHVKGTAKKYPNQTYDR 715

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTI----------SVSA 1082
            +LGP +++ T KP+++H+ LDQ+GIV  G +I  +Q ++NK MP +          +   
Sbjct: 716  LLGPAVDSVTLKPIFKHKNLDQEGIVFTGARILPKQTIINKYMPVVSAESGSAASANTIG 775

Query: 1083 ISMATPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQ 1142
            I+     YK+V ++YK   PSY E+VL++ N ++A L K+LLRQTRRPE+GDKFSSRHGQ
Sbjct: 776  IAGRDVAYKDVSITYKTPTPSYAERVLLTYNEDEAHLFKVLLRQTRRPELGDKFSSRHGQ 835

Query: 1143 KGVIGLIVEQEDMPFNESGICPDIIMNPHG 1172
            KGV GLI +QEDMPFN+ G+ PD+IMNPHG
Sbjct: 836  KGVCGLIAQQEDMPFNDLGMVPDMIMNPHG 865



 Score =  285 bits (729), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 135/204 (66%), Positives = 161/204 (78%), Gaps = 2/204 (0%)

Query: 1169 NPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKF 1228
            N  G+ G D    YK+V ++YK   PSY E+VL++ N ++A L K+LLRQTRRPE+GDKF
Sbjct: 772  NTIGIAGRD--VAYKDVSITYKTPTPSYAERVLLTYNEDEAHLFKVLLRQTRRPELGDKF 829

Query: 1229 SSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGN 1288
            SSRHGQKGV GLI +QEDMPFN+ G+ PD+IMNPHGYPSRMTVGKL+ELL+GKAG+M G 
Sbjct: 830  SSRHGQKGVCGLIAQQEDMPFNDLGMVPDMIMNPHGYPSRMTVGKLMELLSGKAGVMNGT 889

Query: 1289 YKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQ 1348
            Y  GTAFGG ++ DV EEL   GYNY GKD+  SGITG+ L AYIY GP+YYQKLKHMV 
Sbjct: 890  YHYGTAFGGDQVKDVCEELAARGYNYMGKDMLTSGITGQPLSAYIYFGPIYYQKLKHMVL 949

Query: 1349 DKIHARSRGPRVVLTRQPTGRRWK 1372
            DK+HAR+RGPR  LTRQPT  R +
Sbjct: 950  DKMHARARGPRAALTRQPTEGRSR 973



 Score =  228 bits (581), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 115/212 (54%), Positives = 147/212 (69%), Gaps = 4/212 (1%)

Query: 132 HIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVNH 191
            +D  D++ N  ++      A ++ DV    + ++      IAD  + K  AA  DIV H
Sbjct: 276 ELDDRDFYGNKRLELAGSLLALLFEDV----FKRFNSELKRIADNALMKTMAAPLDIVKH 331

Query: 192 MRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKV 251
           MRQD ITN +  A+ TGNW I+RF+MER GVTQVLSRLSYIS LGMMTRINS FEKTRKV
Sbjct: 332 MRQDMITNTIVNAMSTGNWIIKRFRMERLGVTQVLSRLSYISALGMMTRINSTFEKTRKV 391

Query: 252 SGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAM 311
           SGPRSLQ SQWGMLCPSDTPEGEACGLVKNLAL++HITT++DEK +L+++ N G+E +  
Sbjct: 392 SGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALISHITTDSDEKPVLRLLLNSGVEDLHN 451

Query: 312 FNGEELSSPGVYLVFVNGILAGITCHHKEVCK 343
            +   ++ P   L+F+NG+L G     + V K
Sbjct: 452 VHFSHVNKPENTLIFLNGVLIGTAVDPERVVK 483



 Score =  174 bits (441), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 86/135 (63%), Positives = 100/135 (74%), Gaps = 15/135 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G + F+DF+ +G +EYLDVNE ND+ IAV E+ I    TTHLEI PFTLLGVCAG     
Sbjct: 543 GKRIFEDFVDDGIVEYLDVNEMNDALIAVYENEI-GAETTHLEIEPFTLLGVCAG----- 596

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQAMG I YNQQ RID++MY L Y QRP+V+
Sbjct: 597 ---------LIPYPHHNQSPRNTYQCAMGKQAMGTIAYNQQKRIDSIMYLLCYPQRPLVK 647

Query: 808 SKTIRITNFHKLPAG 822
           SKTI +TNF KLPAG
Sbjct: 648 SKTIELTNFEKLPAG 662



 Score =  103 bits (258), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 50/79 (63%), Positives = 61/79 (77%)

Query: 455 DARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAG 514
           +A DFLS++ I HI   +  FKMKA+YL  M RR++      + LDDRD+YGNKRLELAG
Sbjct: 233 EAVDFLSNSMITHIACPDGNFKMKAIYLGQMTRRLIQTEMGENELDDRDFYGNKRLELAG 292

Query: 515 SLLSLMFEDVFKRFNSELK 533
           SLL+L+FEDVFKRFNSELK
Sbjct: 293 SLLALLFEDVFKRFNSELK 311



 Score = 93.6 bits (231), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 42/59 (71%), Positives = 50/59 (84%)

Query: 353 TRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKTE 411
           +R  +  ECRLRD+TYSAPI+VDIEYTRG QRV + DLVIGRMPIML+SSKC+LR+  E
Sbjct: 10  SRNKSESECRLRDMTYSAPISVDIEYTRGHQRVYKKDLVIGRMPIMLRSSKCILRDLAE 68


>gi|350583868|ref|XP_003481606.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2, partial [Sus
            scrofa]
          Length = 438

 Score =  367 bits (943), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 169/238 (71%), Positives = 205/238 (86%), Gaps = 4/238 (1%)

Query: 940  IGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGQNATIAVMSYSGYDIEDALI 999
            IGYNQ+NRIDTLMY L Y Q+PMV++KTI +  F KLPAGQNAT+AVMSYSGYDIEDAL+
Sbjct: 2    IGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALV 61

Query: 1000 MNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRILGPLLEADTRKPVYRHRALDQDGIVA 1059
            +NKASLDRGFGRCLVY+N+KC LK+Y NQT D+++GP+L+A TRKP++RH  LD DGI +
Sbjct: 62   LNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPVLDAATRKPIWRHEILDADGICS 121

Query: 1060 PGEQICERQVLVNKSMPTISVSAISMAT----PEYKEVPVSYKGSVPSYLEKVLVSSNSE 1115
            PGE++  +QVLVNKSMPT++   +  +     P+YK+VP++YKG+  SY+EKV++SSN+E
Sbjct: 122  PGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAE 181

Query: 1116 DAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            DAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GLIV QEDMPF +SGICPDIIMNPHG 
Sbjct: 182  DAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGF 239



 Score =  317 bits (813), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 149/190 (78%), Positives = 170/190 (89%)

Query: 1181 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1240
            +YK+VP++YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GL
Sbjct: 155  QYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGL 214

Query: 1241 IVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKL 1300
            IV QEDMPF +SGICPDIIMNPHG+PSRMTVGKLIELLAGKAG+++G +  GTAFGG+K+
Sbjct: 215  IVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSKV 274

Query: 1301 VDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRV 1360
             DV E+L+RHGYNY GKD   SGITGE LEAYIY GPVYYQKLKHMV DK+HAR+RGPR 
Sbjct: 275  KDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRA 334

Query: 1361 VLTRQPTGRR 1370
            VLTRQPT  R
Sbjct: 335  VLTRQPTEGR 344



 Score = 63.9 bits (154), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 28/41 (68%), Positives = 34/41 (82%)

Query: 783 IGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
           IGYNQ+NRIDTLMY L Y Q+PMV++KTI +  F KLPAG+
Sbjct: 2   IGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQ 42


>gi|209489360|gb|ACI49130.1| hypothetical protein Cbre_JD16.002 [Caenorhabditis brenneri]
 gi|341883892|gb|EGT39827.1| hypothetical protein CAEBREN_00456 [Caenorhabditis brenneri]
          Length = 1152

 Score =  366 bits (940), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 170/271 (62%), Positives = 212/271 (78%), Gaps = 11/271 (4%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG I YNQQ RID++MY L Y QRP+V+SKTI + N
Sbjct: 682  GLIPYPHHNQSPRNTYQCAMGKQAMGTIAYNQQKRIDSIMYLLCYPQRPLVKSKTIELIN 741

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAG N  IAVMSYSGYDIEDAL++NKASLDRG+GRCLVY++ K   ++YPNQT DR
Sbjct: 742  FEKLPAGANGIIAVMSYSGYDIEDALVLNKASLDRGYGRCLVYKHVKGTARKYPNQTFDR 801

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTI---------SVSAI 1083
            +LGP L+  T+KP+ +H+ LD++GIV  G +I  +Q ++NK MP +         S + I
Sbjct: 802  LLGPALDPITKKPIMKHKNLDKEGIVFAGARILPKQTIINKHMPVVSGDNNPASASANTI 861

Query: 1084 SMA--TPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1141
             +A    +YK+V V+YK   PSY E+VL++ N E+A L K+LLRQTRRPE+GDKFSSRHG
Sbjct: 862  GIAGRQVDYKDVSVTYKTPTPSYAERVLLTYNEEEAHLFKVLLRQTRRPELGDKFSSRHG 921

Query: 1142 QKGVIGLIVEQEDMPFNESGICPDIIMNPHG 1172
            QKGV GLI +QEDMPFN+ G+ PD+IMNPHG
Sbjct: 922  QKGVCGLIAQQEDMPFNDLGMVPDMIMNPHG 952



 Score =  287 bits (735), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 137/204 (67%), Positives = 162/204 (79%), Gaps = 2/204 (0%)

Query: 1169 NPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKF 1228
            N  G+ G  R  +YK+V V+YK   PSY E+VL++ N E+A L K+LLRQTRRPE+GDKF
Sbjct: 859  NTIGIAG--RQVDYKDVSVTYKTPTPSYAERVLLTYNEEEAHLFKVLLRQTRRPELGDKF 916

Query: 1229 SSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGN 1288
            SSRHGQKGV GLI +QEDMPFN+ G+ PD+IMNPHGYPSRMTVGKL+ELL+GKAG+M G 
Sbjct: 917  SSRHGQKGVCGLIAQQEDMPFNDLGMVPDMIMNPHGYPSRMTVGKLMELLSGKAGVMNGT 976

Query: 1289 YKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQ 1348
            Y  GTAFGG ++ DV EEL   GYNY GKD+  SGITG+ L AYIY GP+YYQKLKHMV 
Sbjct: 977  YHYGTAFGGDQVKDVCEELAARGYNYMGKDMLTSGITGQPLSAYIYFGPIYYQKLKHMVL 1036

Query: 1349 DKIHARSRGPRVVLTRQPTGRRWK 1372
            DK+HAR+RGPR  LTRQPT  R +
Sbjct: 1037 DKMHARARGPRAALTRQPTEGRSR 1060



 Score =  228 bits (580), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 114/212 (53%), Positives = 147/212 (69%), Gaps = 4/212 (1%)

Query: 132 HIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVNH 191
            +D  D++ N  ++      A ++ DV    + ++      IAD  + K  AA  DIV H
Sbjct: 362 ELDDRDFYGNKRLELAGSLLALLFEDV----FKRFNSELKRIADNALMKTMAAPLDIVKH 417

Query: 192 MRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKV 251
           MRQD ITN +  A+ TGNW I+RF+MER GVTQVLSRLSYIS LGMMTRINS FEKTRKV
Sbjct: 418 MRQDMITNTIVNAMSTGNWIIKRFRMERLGVTQVLSRLSYISALGMMTRINSTFEKTRKV 477

Query: 252 SGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAM 311
           SGPRSLQ SQWGMLCPSDTPEGEACGLVKNLAL++HITT++DEK +L+++ N G+E +  
Sbjct: 478 SGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALISHITTDSDEKPVLRLLLNSGVEDLNN 537

Query: 312 FNGEELSSPGVYLVFVNGILAGITCHHKEVCK 343
            +   ++ P   L+F+NG+L G     + V +
Sbjct: 538 VHFSHINKPENTLIFLNGVLIGTAVDPERVVR 569



 Score =  172 bits (437), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 95/169 (56%), Positives = 113/169 (66%), Gaps = 23/169 (13%)

Query: 656 GARNSQQYCDCPDGYSSGCQPRPTFLNMHQFLGFKR-FDDFLYEGKIEYLDVNEGNDSHI 714
           G R  + Y    DG     +P  T  N+ +    KR F+DF+ +G +EYLDVNE ND+ I
Sbjct: 601 GGRLCRPYIIVKDG-----KPMLTQENVTELKEGKRIFEDFVDDGIVEYLDVNEMNDALI 655

Query: 715 AVSESGIRPGV-TTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQC 773
           AV E+ I  G+ TTHLEI PFTLLGVCAG              L+PYPHHNQ+PRNTYQC
Sbjct: 656 AVYENEI--GLETTHLEIEPFTLLGVCAG--------------LIPYPHHNQSPRNTYQC 699

Query: 774 AMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAG 822
           AMGKQAMG I YNQQ RID++MY L Y QRP+V+SKTI + NF KLPAG
Sbjct: 700 AMGKQAMGTIAYNQQKRIDSIMYLLCYPQRPLVKSKTIELINFEKLPAG 748



 Score =  103 bits (256), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 50/79 (63%), Positives = 61/79 (77%)

Query: 455 DARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAG 514
           +A DFLS++ I HI   +  FKMKA+YL  M RR++      + LDDRD+YGNKRLELAG
Sbjct: 319 EAVDFLSNSMITHIACPDGNFKMKAIYLGQMTRRLIQTELGENELDDRDFYGNKRLELAG 378

Query: 515 SLLSLMFEDVFKRFNSELK 533
           SLL+L+FEDVFKRFNSELK
Sbjct: 379 SLLALLFEDVFKRFNSELK 397



 Score =  103 bits (256), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 48/72 (66%), Positives = 58/72 (80%), Gaps = 1/72 (1%)

Query: 341 VCKPEIEESFNYTR-QTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIML 399
           V  P  EE  N T  + TP ECRLRD+TYSAPI+VDIEYTRG+QRV++ DL+IGRMPIML
Sbjct: 83  VGTPSSEEGLNMTHDKITPQECRLRDMTYSAPISVDIEYTRGNQRVLKKDLIIGRMPIML 142

Query: 400 QSSKCVLRNKTE 411
           +SSKC+LR+  E
Sbjct: 143 RSSKCILRDLAE 154



 Score = 81.3 bits (199), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/101 (43%), Positives = 58/101 (57%), Gaps = 10/101 (9%)

Query: 90  AVHGTYLTMVTDETSKLKDSPEIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQ 149
           +V     T V  E  +      ++DKW LV +FLK +GLVK H+ SFD+F+N EI+ +M 
Sbjct: 2   SVQANGRTRVKSECGEKPKCMPLKDKWLLVPAFLKVRGLVKQHLVSFDHFVNEEIRNIML 61

Query: 150 ANANIYSDVDPLFYLKYLDIHVGIA----------DKIIPK 180
           +N  I SD +P FYLKYLDI VG            DKI P+
Sbjct: 62  SNQKITSDANPNFYLKYLDIRVGTPSSEEGLNMTHDKITPQ 102


>gi|391325293|ref|XP_003737173.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like
            [Metaseiulus occidentalis]
          Length = 1162

 Score =  361 bits (926), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 158/261 (60%), Positives = 209/261 (80%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            G++P+PHHNQ+PRNTYQCAMGKQAMG IGYNQ  RIDTL YN+V+ QRP+V +K I++ N
Sbjct: 681  GIIPFPHHNQSPRNTYQCAMGKQAMGVIGYNQHMRIDTLQYNMVFPQRPLVSTKAIKLIN 740

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F ++PAGQN  +AVMSYSGYDIEDA+++NK S++RGFG C V  + KC L++YPN   DR
Sbjct: 741  FDRMPAGQNVCLAVMSYSGYDIEDAIVLNKNSMERGFGECRVVTSQKCQLRRYPNMACDR 800

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKE 1092
            ILGPL++A TRKP++ H+ LD DGIV PGE + + QVL+N+ +P  + S       EYKE
Sbjct: 801  ILGPLVDASTRKPIFDHQCLDYDGIVMPGETVVKGQVLINRHIPAGTASLDPGQPIEYKE 860

Query: 1093 VPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQ 1152
            +P+ Y+G+VP+ +++V+VS N++   L K+++ QTR+PEIGDKFSSRHGQKGV+GLIV Q
Sbjct: 861  MPLRYQGTVPAQIDRVMVSVNADGETLFKVVMSQTRKPEIGDKFSSRHGQKGVVGLIVGQ 920

Query: 1153 EDMPFNESGICPDIIMNPHGL 1173
            EDMPF++ G+ PDIIMNPHG 
Sbjct: 921  EDMPFDDQGVVPDIIMNPHGF 941



 Score =  251 bits (642), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 115/196 (58%), Positives = 153/196 (78%), Gaps = 6/196 (3%)

Query: 1181 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1240
            EYKE+P+ Y+G+VP+ +++V+VS N++   L K+++ QTR+PEIGDKFSSRHGQKGV+GL
Sbjct: 857  EYKEMPLRYQGTVPAQIDRVMVSVNADGETLFKVVMSQTRKPEIGDKFSSRHGQKGVVGL 916

Query: 1241 IVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGG--- 1297
            IV QEDMPF++ G+ PDIIMNPHG+PSRMTVGK+IE+LAGKA  + G  ++ TAF     
Sbjct: 917  IVGQEDMPFDDQGVVPDIIMNPHGFPSRMTVGKMIEILAGKAAALSGEVQDATAFENKSE 976

Query: 1298 ---TKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHAR 1354
                   ++ E L R+G+++QGKDI   G+ G+ ++AYIY G  YYQ+LKHMVQDK+HAR
Sbjct: 977  GEPVTCSEMGELLQRNGFHFQGKDILTCGVNGQPMQAYIYRGTCYYQRLKHMVQDKMHAR 1036

Query: 1355 SRGPRVVLTRQPTGRR 1370
            +RGPR VLTRQPT  R
Sbjct: 1037 ARGPRAVLTRQPTEGR 1052



 Score =  204 bits (519), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 110/224 (49%), Positives = 144/224 (64%), Gaps = 11/224 (4%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV-GIADKIIPKIKAAQFDIVNH 191
           ID  DY+ N  ++      + ++ D+     LK ++  +  IADK IP ++  QFDIV  
Sbjct: 363 IDDRDYYGNKRVELPGSMISLLFEDL-----LKRVNSELKTIADKQIPMMRVTQFDIVKF 417

Query: 192 MRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKV 251
           M+  TIT  L  AI TGNW IRRF M   GVTQVLSRL+YIS LGMMTR+NS FEK+RKV
Sbjct: 418 MKPSTITTGLINAISTGNWIIRRFNMHTIGVTQVLSRLNYISCLGMMTRVNSHFEKSRKV 477

Query: 252 SGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAM 311
           SGPRSLQ SQ+GMLCPSDTPEGEACGLVKN+AL+ HIT  N   ++     ++G++ + +
Sbjct: 478 SGPRSLQPSQFGMLCPSDTPEGEACGLVKNMALLAHITI-NSSADLTDFFISLGVQDVRL 536

Query: 312 FNGEELSSPGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQ 355
             G E S   +Y VF NG++ G+   H+      IEE   + R+
Sbjct: 537 LCGAEFSHSHIYHVFHNGVIKGVIEDHRRF----IEEVRQFRRK 576



 Score =  162 bits (409), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 78/132 (59%), Positives = 94/132 (71%), Gaps = 15/132 (11%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKR 751
           F DFL  G +E+LDVNE ND+ IAV E  I    TTHLEIAPFT+L  CAGI        
Sbjct: 632 FQDFLDIGLVEFLDVNEENDALIAVYEKDITDK-TTHLEIAPFTILSACAGI-------- 682

Query: 752 FHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTI 811
                 +P+PHHNQ+PRNTYQCAMGKQAMG IGYNQ  RIDTL YN+V+ QRP+V +K I
Sbjct: 683 ------IPFPHHNQSPRNTYQCAMGKQAMGVIGYNQHMRIDTLQYNMVFPQRPLVSTKAI 736

Query: 812 RITNFHKLPAGK 823
           ++ NF ++PAG+
Sbjct: 737 KLINFDRMPAGQ 748



 Score = 90.1 bits (222), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 48/100 (48%), Positives = 68/100 (68%), Gaps = 7/100 (7%)

Query: 439 KLRQKRFQTYK-KTPVDDARDFLSSTCIAHIPV----INMRFKMKAMYLAVMIRRMVLAL 493
           K++ + F   K + P+D A + + S+ I HIP      NMR  ++A YL +M+RR++ A 
Sbjct: 300 KMKSRVFGPQKVEDPLDKAWEAVLSSVINHIPAQPPEYNMR--LRAHYLGLMVRRIIQAK 357

Query: 494 SDPDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
            D   +DDRDYYGNKR+EL GS++SL+FED+ KR NSELK
Sbjct: 358 YDRGFIDDRDYYGNKRVELPGSMISLLFEDLLKRVNSELK 397



 Score = 84.0 bits (206), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 40/75 (53%), Positives = 52/75 (69%)

Query: 344 PEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSK 403
           P I E       TTP++CRLRD+TY API VDI Y RG++ V+R++L IGRMPIML+S  
Sbjct: 95  PSIVEGPGMIAATTPYQCRLRDMTYFAPIYVDIAYKRGNELVIRNELEIGRMPIMLKSKG 154

Query: 404 CVLRNKTEYTSSSRR 418
           CVL +KT +  +  R
Sbjct: 155 CVLHSKTPWELTKLR 169



 Score = 71.6 bits (174), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 56/89 (62%), Gaps = 6/89 (6%)

Query: 84  WLGTVKAVHGTYLTMVTDETSKLKDSPEIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVE 143
           +L  + AVHGT         S++ +   +  K  LV  FLK KGLV  HI SFDYF+  E
Sbjct: 11  FLVILFAVHGT------GSVSRVVEMGCLDGKDGLVAEFLKTKGLVLHHIASFDYFVETE 64

Query: 144 IKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           ++++++ANA +YS+ DP +Y++Y DI +G
Sbjct: 65  MREILEANAIVYSEADPNWYMEYTDIRIG 93


>gi|193599220|ref|XP_001950634.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2
            [Acyrthosiphon pisum]
          Length = 1112

 Score =  361 bits (926), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 169/261 (64%), Positives = 208/261 (79%), Gaps = 3/261 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+PHHNQ+PRNTYQCAMGKQA+G I  N Q+RIDTL YNL Y   PMV SK + + N+
Sbjct: 655  VIPFPHHNQSPRNTYQCAMGKQAIGTIALNYQHRIDTLQYNLWYTHIPMVHSKAVPMINY 714

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             KLPAGQNATIAVMSYSGYDIEDA+I+NKAS+DRGFGR   +RNSKC L+ YPNQ  D I
Sbjct: 715  DKLPAGQNATIAVMSYSGYDIEDAIILNKASVDRGFGRGGTFRNSKCFLRHYPNQMMDSI 774

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMP-TISVSAISMATPEYKE 1092
             GP+++  T+KP+Y+HRAL+ DGI A G+ + ++QV +NK+ P TI+V  +      +KE
Sbjct: 775  QGPIIDNATKKPIYKHRALENDGIAAIGQPVFDKQVTINKATPKTITVEDVG-GDRGFKE 833

Query: 1093 VPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQ 1152
             P+ YKG  PSY++KV+++SNS D FLIK   RQ RRPEIGDKFSSRHGQKGV+GLIV+Q
Sbjct: 834  TPLYYKGYDPSYVDKVMITSNS-DCFLIKENFRQPRRPEIGDKFSSRHGQKGVVGLIVDQ 892

Query: 1153 EDMPFNESGICPDIIMNPHGL 1173
            EDMPFNE GICPD+IMNPHG 
Sbjct: 893  EDMPFNEVGICPDLIMNPHGF 913



 Score =  298 bits (764), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 137/191 (71%), Positives = 162/191 (84%), Gaps = 1/191 (0%)

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
            +KE P+ YKG  PSY++KV+++SNS D FLIK   RQ RRPEIGDKFSSRHGQKGV+GLI
Sbjct: 831  FKETPLYYKGYDPSYVDKVMITSNS-DCFLIKENFRQPRRPEIGDKFSSRHGQKGVVGLI 889

Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
            V+QEDMPFNE GICPD+IMNPHG+PSRMTVGKLIELLAGKAG++EG +++G+AFGG  + 
Sbjct: 890  VDQEDMPFNEVGICPDLIMNPHGFPSRMTVGKLIELLAGKAGVLEGKFQDGSAFGGATVT 949

Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
            D+  EL +H YNY GKD+ Y GI G  +EAYIYSGPV+YQ+LKHMV DKIHARSRGPRV+
Sbjct: 950  DISNELQKHNYNYLGKDVLYCGIDGRPMEAYIYSGPVFYQRLKHMVADKIHARSRGPRVL 1009

Query: 1362 LTRQPTGRRWK 1372
            LTRQPT  R K
Sbjct: 1010 LTRQPTEGRSK 1020



 Score =  223 bits (569), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 101/164 (61%), Positives = 136/164 (82%), Gaps = 1/164 (0%)

Query: 173 IADKIIPKIKAAQFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYI 232
           +ADK IPK+KA  FDI+ ++R DTITNAL  AIQTGNW+I+RF+MER GVTQVL+RLSY+
Sbjct: 370 VADKNIPKVKATPFDIIKYIRTDTITNALVFAIQTGNWSIKRFRMERHGVTQVLTRLSYL 429

Query: 233 SGLGMMTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTEN 292
           S +GMMTR+NSQFEK+RKVSGPRSLQ SQ+GMLCPSDTPEGEACGL+KN++L+ H+TTE+
Sbjct: 430 SAIGMMTRVNSQFEKSRKVSGPRSLQPSQFGMLCPSDTPEGEACGLIKNISLLAHVTTES 489

Query: 293 -DEKNMLKIMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAGIT 335
            D+  +L++  N+G+E + +++ ++L    +YL+  NG + G T
Sbjct: 490 EDDDAVLQLALNLGVEPVGLYSVDDLHEDYMYLIIFNGNIIGST 533



 Score =  144 bits (363), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 69/136 (50%), Positives = 92/136 (67%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G+  F DF+ +  IE++DV+E N+  IA +E  I P  TTH+E+APF++LG+CA +    
Sbjct: 601 GYCTFQDFIDQSLIEFIDVDEENNCLIAYNEEKIVPE-TTHMEMAPFSILGICASV---- 655

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                     +P+PHHNQ+PRNTYQCAMGKQA+G I  N Q+RIDTL YNL Y   PMV 
Sbjct: 656 ----------IPFPHHNQSPRNTYQCAMGKQAIGTIALNYQHRIDTLQYNLWYTHIPMVH 705

Query: 808 SKTIRITNFHKLPAGK 823
           SK + + N+ KLPAG+
Sbjct: 706 SKAVPMINYDKLPAGQ 721



 Score =  108 bits (269), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 48/114 (42%), Positives = 77/114 (67%), Gaps = 2/114 (1%)

Query: 422 SSVTMHSQRTSPLLSCKKLRQKRF--QTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKA 479
           S + +++Q+ +      ++++  F  + Y    + +  DFLS+  +AHIPV N  + MKA
Sbjct: 255 SKLNIYTQKQALRFIGDRIKKMGFSSEDYDSRVITEVHDFLSTVILAHIPVTNTNYHMKA 314

Query: 480 MYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
           +Y ++M+RR++ +LS+PD+ D +DYYGNK L+L GS LSL+F+D FKRF  ELK
Sbjct: 315 IYTSIMVRRLIFSLSNPDLFDSKDYYGNKCLDLPGSFLSLLFDDTFKRFTFELK 368



 Score = 90.9 bits (224), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 43/94 (45%), Positives = 59/94 (62%), Gaps = 10/94 (10%)

Query: 318 SSPGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIE 377
           + P  YL F N     +T  H     P++++ FN TR  TP ECRLRDLTY API VDIE
Sbjct: 51  ADPNFYLHFKN-----VTVGH-----PQVDDGFNVTRNVTPQECRLRDLTYCAPIYVDIE 100

Query: 378 YTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKTE 411
           Y +   + +R   +IGR+PIML+S++C L  K++
Sbjct: 101 YVKSGMKYLRKGFIIGRLPIMLRSNRCCLYQKSD 134



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 42/61 (68%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           +RDK  LV  +L+ +GL   HI+SF+ FI+ ++KK++Q N  + SD DP FYL + ++ V
Sbjct: 5   LRDKEFLVKEYLETRGLYSHHINSFNAFIDSDLKKIIQQNHAVRSDADPNFYLHFKNVTV 64

Query: 172 G 172
           G
Sbjct: 65  G 65


>gi|170037347|ref|XP_001846520.1| conserved hypothetical protein [Culex quinquefasciatus]
 gi|167880429|gb|EDS43812.1| conserved hypothetical protein [Culex quinquefasciatus]
          Length = 928

 Score =  356 bits (914), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 161/237 (67%), Positives = 199/237 (83%), Gaps = 6/237 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GLVPYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMYN+VY Q PMV S+TI +TN
Sbjct: 671  GLVPYPHHNQSPRNTYQCAMGKQAMGIIGYNQKNRIDTLMYNIVYPQTPMVRSRTIELTN 730

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNAT+AVMSYSGYDIEDALI+NKAS+DRG+GRCLVY+NSKC +K+Y NQT DR
Sbjct: 731  FDKLPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTIKRYSNQTFDR 790

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAISMATP--- 1088
            I+GP+ ++ T K ++RH  LD DGI++PGE++  +Q +VNK MP + S++ I        
Sbjct: 791  IMGPMKDSLTNKIIFRHECLDTDGIISPGEKVSSKQTMVNKEMPAVKSINPIEQKESGQQ 850

Query: 1089 --EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1143
               Y  VP++YKG+ PSY+EKV+VS+N+++ FL+K+LLRQTRRPEIGDKFSSRHGQK
Sbjct: 851  PIAYSGVPITYKGTEPSYIEKVMVSTNNDEEFLVKILLRQTRRPEIGDKFSSRHGQK 907



 Score =  260 bits (664), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 131/216 (60%), Positives = 162/216 (75%), Gaps = 4/216 (1%)

Query: 128 LVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFD 187
           L +  +D  DY+ N   K+L  A + +    + LF     ++ + IADK IPKIKAAQFD
Sbjct: 346 LDRSAVDDRDYYGN---KRLELAGSLLSLMFEDLFKRFNWELKM-IADKNIPKIKAAQFD 401

Query: 188 IVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEK 247
           IV HMR   I+  L  AI TGNWTI+RFKMER GVTQVLSRLSYIS LGMMTR+NSQFEK
Sbjct: 402 IVKHMRAALISTGLETAISTGNWTIKRFKMERAGVTQVLSRLSYISALGMMTRVNSQFEK 461

Query: 248 TRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIE 307
           TRKVSGPRSLQ SQWGMLCPSDTPEGEACGLVKNLALMTHITTE DE+ ++++ YN G+E
Sbjct: 462 TRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVDEEPVIRLAYNSGVE 521

Query: 308 HIAMFNGEELSSPGVYLVFVNGILAGITCHHKEVCK 343
            I +  GE +++P V++VF+NG + G+T  +K + +
Sbjct: 522 DIRLLGGETINNPKVFMVFINGNILGVTIMYKRLVE 557



 Score =  198 bits (504), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 94/137 (68%), Positives = 105/137 (76%), Gaps = 14/137 (10%)

Query: 687 LGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELL 746
           +G ++FDDFL++G IEYLDVNE NDS IA  E  I P  TTHLEI PFTLLGVCAG    
Sbjct: 616 VGLRKFDDFLHDGLIEYLDVNEENDSFIAYQELDIDPEKTTHLEIEPFTLLGVCAG---- 671

Query: 747 QYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMV 806
                     LVPYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMYN+VY Q PMV
Sbjct: 672 ----------LVPYPHHNQSPRNTYQCAMGKQAMGIIGYNQKNRIDTLMYNIVYPQTPMV 721

Query: 807 ESKTIRITNFHKLPAGK 823
            S+TI +TNF KLPAG+
Sbjct: 722 RSRTIELTNFDKLPAGQ 738



 Score =  122 bits (306), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 64/115 (55%), Positives = 81/115 (70%), Gaps = 12/115 (10%)

Query: 303 NIGIEHIAMFNGEELSS--PGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHE 360
           N+ I++I   N E  S   P  YL ++N +  G+         P++EE FN T+ TTPHE
Sbjct: 51  NVDIKNIVRANDEVKSDADPCFYLKYLN-VAIGM---------PDVEEGFNNTKSTTPHE 100

Query: 361 CRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKTEYTSS 415
           CRLRD+TY+APITVDIEYTRG+QRVVR+ L+IGRMPIML+SS CVL  K+EY  S
Sbjct: 101 CRLRDMTYAAPITVDIEYTRGTQRVVRNGLLIGRMPIMLRSSNCVLSGKSEYELS 155



 Score =  118 bits (295), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 60/98 (61%), Positives = 74/98 (75%), Gaps = 3/98 (3%)

Query: 439 KLRQKRFQTYKKTPV---DDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSD 495
           KL  KRF T         D+ARD L++T +AH+PV N  F++KA+Y+A+MIRR++ A  D
Sbjct: 288 KLIAKRFTTAATKYKTTADEARDLLATTILAHVPVNNFNFQVKAIYVALMIRRVMAAELD 347

Query: 496 PDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
              +DDRDYYGNKRLELAGSLLSLMFED+FKRFN ELK
Sbjct: 348 RSAVDDRDYYGNKRLELAGSLLSLMFEDLFKRFNWELK 385



 Score = 91.3 bits (225), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 39/54 (72%), Positives = 50/54 (92%)

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1235
            Y  VP++YKG+ PSY+EKV+VS+N+++ FL+K+LLRQTRRPEIGDKFSSRHGQK
Sbjct: 854  YSGVPITYKGTEPSYIEKVMVSTNNDEEFLVKILLRQTRRPEIGDKFSSRHGQK 907



 Score = 90.5 bits (223), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 39/64 (60%), Positives = 52/64 (81%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           + DKWKLV +FL+ KGLVK HIDSF+YFINV+IK +++AN  + SD DP FYLKYL++ +
Sbjct: 22  LEDKWKLVPAFLQIKGLVKQHIDSFNYFINVDIKNIVRANDEVKSDADPCFYLKYLNVAI 81

Query: 172 GIAD 175
           G+ D
Sbjct: 82  GMPD 85


>gi|449674053|ref|XP_002157863.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like, partial
            [Hydra magnipapillata]
          Length = 494

 Score =  355 bits (911), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 172/260 (66%), Positives = 205/260 (78%), Gaps = 14/260 (5%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GLVPYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMY LVY  +PMV+SKT+ I  
Sbjct: 105  GLVPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLVYPHQPMVKSKTLDIIQ 164

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNAT+AVMSYSGYDIEDALI+NK+SLDR             V+  + N+T DR
Sbjct: 165  FEKLPAGQNATVAVMSYSGYDIEDALIINKSSLDRAMTH---------VIFLHENETFDR 215

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTIS-----VSAISMAT 1087
            ++GP  +A T + +++H+ LD DGI   GEQ+ ++QVLVNKSMPTI+      +A  + T
Sbjct: 216  VMGPSRDAKTGEIIWKHKVLDTDGICRAGEQVLDKQVLVNKSMPTITNQLTQTTAGQLNT 275

Query: 1088 PEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
             +YK+VP SY G +PSY+EKVL+SS  EDAFLIKML+RQTRRPEIGDKFSSRHGQKGV G
Sbjct: 276  TDYKDVPTSYHGPIPSYVEKVLISSTMEDAFLIKMLMRQTRRPEIGDKFSSRHGQKGVCG 335

Query: 1148 LIVEQEDMPFNESGICPDII 1167
            LIV QEDMPF + GICPDI+
Sbjct: 336  LIVNQEDMPFTDLGICPDIV 355



 Score =  235 bits (600), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 117/191 (61%), Positives = 132/191 (69%), Gaps = 34/191 (17%)

Query: 1180 TEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1239
            T+YK+VP SY G +PSY+EKVL+SS  EDAFLIKML+RQTRRPEIGDKFSSRHGQKGV G
Sbjct: 276  TDYKDVPTSYHGPIPSYVEKVLISSTMEDAFLIKMLMRQTRRPEIGDKFSSRHGQKGVCG 335

Query: 1240 LIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTK 1299
            LIV QEDMPF + GICPDI+                                   FGG+K
Sbjct: 336  LIVNQEDMPFTDLGICPDIV----------------------------------TFGGSK 361

Query: 1300 LVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPR 1359
            +VDV E L+ HG+NY GKD   SGI GE L AYIY GPVYYQKLKHMV DK+HAR++GPR
Sbjct: 362  VVDVCETLVNHGFNYAGKDFLTSGINGEPLSAYIYMGPVYYQKLKHMVLDKMHARAKGPR 421

Query: 1360 VVLTRQPTGRR 1370
             VLTRQPT  R
Sbjct: 422  AVLTRQPTEGR 432



 Score =  176 bits (445), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 88/136 (64%), Positives = 100/136 (73%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G + F+DFL++G IEYLDVNE NDS IA+ E G     TTH+EI PFTLLGVC G     
Sbjct: 52  GTRTFEDFLHQGLIEYLDVNELNDSEIALYEEGCTKD-TTHMEIEPFTLLGVCVG----- 105

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    LVPYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMY LVY  +PMV+
Sbjct: 106 ---------LVPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLVYPHQPMVK 156

Query: 808 SKTIRITNFHKLPAGK 823
           SKT+ I  F KLPAG+
Sbjct: 157 SKTLDIIQFEKLPAGQ 172


>gi|78190613|gb|ABB29628.1| RNA polymerase III second largest subunit [Priapulus caudatus]
          Length = 239

 Score =  351 bits (900), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 162/239 (67%), Positives = 196/239 (82%), Gaps = 5/239 (2%)

Query: 934  KQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGQNATIAVMSYSGYD 993
            KQAMG IGYNQ+NRIDTL+YNLVY Q P+V+S+TI I  F KLPAG  AT+AVMSYSGYD
Sbjct: 1    KQAMGTIGYNQRNRIDTLLYNLVYPQAPLVKSRTIDIIGFDKLPAGMAATVAVMSYSGYD 60

Query: 994  IEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRILGPLLEADTRKPVYRHRALD 1053
            IEDA ++NKASLDRGF RCLVYR   CVLK+Y NQT DR++GPLL+A T+KP++RH  LD
Sbjct: 61   IEDAXVLNKASLDRGFARCLVYRKQNCVLKRYANQTFDRVMGPLLDATTKKPIWRHTVLD 120

Query: 1054 QDGIVAPGEQICERQVLVNKSMPTISVSAISMAT-----PEYKEVPVSYKGSVPSYLEKV 1108
             DGI APG +   +QVLVNKSMPT++ S +         PEY++VP+ YKG+  SY+EKV
Sbjct: 121  SDGIAAPGLRAESKQVLVNKSMPTVTASPLQTQAGQPQQPEYRDVPIVYKGAADSYVEKV 180

Query: 1109 LVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDII 1167
            +++SN+E+AFLIK+L+RQTRRPEIGDKFSSRHGQKGV GLI +QEDMPF + GICPDII
Sbjct: 181  MITSNNEEAFLIKLLMRQTRRPEIGDKFSSRHGQKGVCGLIAQQEDMPFTDFGICPDII 239



 Score =  136 bits (342), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 66/114 (57%), Positives = 86/114 (75%), Gaps = 3/114 (2%)

Query: 1147 GLIVEQEDMPFNESGICPDIIMNP-HGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSN 1205
            GL  E + +  N+S   P +  +P     G  +  EY++VP+ YKG+  SY+EKV+++SN
Sbjct: 128  GLRAESKQVLVNKS--MPTVTASPLQTQAGQPQQPEYRDVPIVYKGAADSYVEKVMITSN 185

Query: 1206 SEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDII 1259
            +E+AFLIK+L+RQTRRPEIGDKFSSRHGQKGV GLI +QEDMPF + GICPDII
Sbjct: 186  NEEAFLIKLLMRQTRRPEIGDKFSSRHGQKGVCGLIAQQEDMPFTDFGICPDII 239



 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/46 (73%), Positives = 39/46 (84%)

Query: 777 KQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAG 822
           KQAMG IGYNQ+NRIDTL+YNLVY Q P+V+S+TI I  F KLPAG
Sbjct: 1   KQAMGTIGYNQRNRIDTLLYNLVYPQAPLVKSRTIDIIGFDKLPAG 46


>gi|78190561|gb|ABB29602.1| RNA polymerase III second largest subunit [Platynereis dumerilii]
          Length = 239

 Score =  350 bits (899), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 162/239 (67%), Positives = 199/239 (83%), Gaps = 5/239 (2%)

Query: 934  KQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGQNATIAVMSYSGYD 993
            KQAMG IGYNQ+NRIDTLMY L Y   PMV++KTI +  F K+PAGQNA +AVMSYSGYD
Sbjct: 1    KQAMGTIGYNQRNRIDTLMYLLAYPHAPMVKTKTIDLIQFDKIPAGQNAMVAVMSYSGYD 60

Query: 994  IEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRILGPLLEADTRKPVYRHRALD 1053
            IEDAL++NKAS+DRGFGRCLVYRN K +LK+Y NQT D+++GP+L+A T KP++RH  LD
Sbjct: 61   IEDALVLNKASVDRGFGRCLVYRNQKVILKRYANQTFDKVMGPVLDATTHKPIWRHDILD 120

Query: 1054 QDGIVAPGEQICERQVLVNKSMPTISVSAISMAT-----PEYKEVPVSYKGSVPSYLEKV 1108
            QDGI  PGE++  +Q+LVNK MPT+++S I  A+     P+Y++ P SYKG +PSY+EKV
Sbjct: 121  QDGICGPGERVENKQILVNKHMPTVTMSPIDAASKQPAPPQYRDTPASYKGPMPSYIEKV 180

Query: 1109 LVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDII 1167
            ++SSN+E+A LIK+LLRQTRRPEIGDKFSSRHGQKGV GLIV QEDMPF + GICPDII
Sbjct: 181  MISSNAEEAHLIKILLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFTDLGICPDII 239



 Score =  134 bits (337), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 60/79 (75%), Positives = 71/79 (89%)

Query: 1181 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1240
            +Y++ P SYKG +PSY+EKV++SSN+E+A LIK+LLRQTRRPEIGDKFSSRHGQKGV GL
Sbjct: 161  QYRDTPASYKGPMPSYIEKVMISSNAEEAHLIKILLRQTRRPEIGDKFSSRHGQKGVCGL 220

Query: 1241 IVEQEDMPFNESGICPDII 1259
            IV QEDMPF + GICPDII
Sbjct: 221  IVPQEDMPFTDLGICPDII 239



 Score = 68.9 bits (167), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/47 (65%), Positives = 37/47 (78%)

Query: 777 KQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
           KQAMG IGYNQ+NRIDTLMY L Y   PMV++KTI +  F K+PAG+
Sbjct: 1   KQAMGTIGYNQRNRIDTLMYLLAYPHAPMVKTKTIDLIQFDKIPAGQ 47


>gi|406604716|emb|CCH43851.1| DNA-directed RNA polymerase III subunit [Wickerhamomyces ciferrii]
          Length = 1152

 Score =  347 bits (891), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 161/262 (61%), Positives = 208/262 (79%), Gaps = 2/262 (0%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ +RIDTL+Y +VY Q+PMV+SKTI + +
Sbjct: 694  GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFHRIDTLLYLMVYPQQPMVKSKTIELID 753

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+AVMSYSGYDIEDAL++NK+S+DRGFGRC V R +  VLK+YPN T D 
Sbjct: 754  YDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCQVLRKNTTVLKRYPNHTKDI 813

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAI-SMATPEYK 1091
            I G  ++ D  +P ++H +L  DG+   G ++   QV +NKS+PT +  +I +  T EY+
Sbjct: 814  IAGMRVK-DNGEPTFQHASLGPDGLAEVGTRVESGQVYINKSIPTNAADSIMNQDTGEYR 872

Query: 1092 EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVE 1151
            E PV YK   PSY+++V+++++  D  LIK+LLRQTRRPE+GDKFSSRHGQKGV G+IV+
Sbjct: 873  ETPVVYKAPEPSYIDQVMMTTSDNDQELIKVLLRQTRRPELGDKFSSRHGQKGVCGIIVQ 932

Query: 1152 QEDMPFNESGICPDIIMNPHGL 1173
            QED+PFN+ GI PDIIMNPHG 
Sbjct: 933  QEDLPFNDDGISPDIIMNPHGF 954



 Score =  280 bits (717), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 125/192 (65%), Positives = 161/192 (83%)

Query: 1181 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1240
            EY+E PV YK   PSY+++V+++++  D  LIK+LLRQTRRPE+GDKFSSRHGQKGV G+
Sbjct: 870  EYRETPVVYKAPEPSYIDQVMMTTSDNDQELIKVLLRQTRRPELGDKFSSRHGQKGVCGI 929

Query: 1241 IVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKL 1300
            IV+QED+PFN+ GI PDIIMNPHG+PSRMTVGK++EL++GKAG++ G+ + GT FGG+ L
Sbjct: 930  IVQQEDLPFNDDGISPDIIMNPHGFPSRMTVGKMLELVSGKAGVLNGSLEYGTCFGGSDL 989

Query: 1301 VDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRV 1360
             D+ + L+  G+NY GKD+ YSGITGE L+AYI+ GP+YYQKLKHMV DK+HAR+RGPR 
Sbjct: 990  EDMSKILMDKGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRA 1049

Query: 1361 VLTRQPTGRRWK 1372
            VLTRQPT  R +
Sbjct: 1050 VLTRQPTEGRSR 1061



 Score =  193 bits (491), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 111/207 (53%), Positives = 144/207 (69%), Gaps = 11/207 (5%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPK-IKAAQFD-IVN 190
           +D  DY  N  ++   Q  + ++ D   LF     D    I DKI+ K  +A +FD ++N
Sbjct: 374 VDDRDYVGNKRLELAGQLMSLLFED---LFKKFNTDFKANI-DKILRKPNRATEFDALLN 429

Query: 191 -HMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
            ++  + IT  L  AI TGNW+++RFKMER GVT VLSRLSYIS LGMMTRI+SQFEK+R
Sbjct: 430 INIHSNNITTGLNRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSR 489

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHI 309
           KVSGPR+LQ SQ+GMLC SDTPEGEACGLVKNLALMTHITT+++E+ + K+ Y IG+E I
Sbjct: 490 KVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTDDEEEPIKKLCYLIGVEEI 549

Query: 310 AMFNGEEL-SSPGVYLVFVNGILAGIT 335
           ++ +   L  + GVYL   NG + G T
Sbjct: 550 SVIDSASLHDNFGVYL---NGTIIGTT 573



 Score =  161 bits (407), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 81/144 (56%), Positives = 99/144 (68%), Gaps = 19/144 (13%)

Query: 684 HQFLGFKR----FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGV 739
           H  L  K+    FDDFL +G +EYLDVNE ND +IA+ E  I     THLEI PFT+LG 
Sbjct: 633 HHLLKLKQGKLQFDDFLKQGLVEYLDVNEENDCYIALYERDITEK-ATHLEIEPFTVLGA 691

Query: 740 CAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLV 799
            AG              L+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ +RIDTL+Y +V
Sbjct: 692 VAG--------------LIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFHRIDTLLYLMV 737

Query: 800 YAQRPMVESKTIRITNFHKLPAGK 823
           Y Q+PMV+SKTI + ++ KLPAG+
Sbjct: 738 YPQQPMVKSKTIELIDYDKLPAGQ 761



 Score =  101 bits (251), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 44/91 (48%), Positives = 70/91 (76%)

Query: 443 KRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDR 502
           K  +  K + + +  + +++T IAH+ V ++ F+ KA+Y+A+M RR+V+A+ +P M+DDR
Sbjct: 318 KTMRRAKLSILQEGIEAIATTVIAHLTVNDLDFREKALYIALMTRRVVMAMHNPKMVDDR 377

Query: 503 DYYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
           DY GNKRLELAG L+SL+FED+FK+FN++ K
Sbjct: 378 DYVGNKRLELAGQLMSLLFEDLFKKFNTDFK 408



 Score = 88.2 bits (217), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 38/61 (62%), Positives = 51/61 (83%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGI 173
           DKW L+ +FLK KGLVK H+DSF+YF++V++KK+++AN  + SDVDP FY+KYLDI VG 
Sbjct: 52  DKWNLLPAFLKVKGLVKQHLDSFNYFVDVDLKKIIKANEKVLSDVDPDFYIKYLDIRVGE 111

Query: 174 A 174
           A
Sbjct: 112 A 112



 Score = 80.9 bits (198), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 35/59 (59%), Positives = 46/59 (77%)

Query: 358 PHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKTEYTSSS 416
           PHECRLRD+TYSAPI VD+EYTRG + ++   L IG+MPIML+S+KC+L   +E   +S
Sbjct: 123 PHECRLRDMTYSAPIYVDVEYTRGRKIIMHKGLEIGKMPIMLRSNKCILDGASEAKMAS 181


>gi|213402277|ref|XP_002171911.1| DNA-directed RNA polymerase III subunit RPC2 [Schizosaccharomyces
            japonicus yFS275]
 gi|211999958|gb|EEB05618.1| DNA-directed RNA polymerase III subunit RPC2 [Schizosaccharomyces
            japonicus yFS275]
          Length = 1160

 Score =  345 bits (884), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 153/267 (57%), Positives = 207/267 (77%), Gaps = 6/267 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            G++PYPHHNQ+PRNTYQCAMGKQA+G IGYNQ  RIDTL+Y +VY Q+PMV++KTI +  
Sbjct: 694  GVIPYPHHNQSPRNTYQCAMGKQAIGAIGYNQLQRIDTLLYLMVYPQQPMVKTKTIELIG 753

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNA +A+MSYSGYDIEDAL++NKASLDRGFGRC V+     ++++YPN THDR
Sbjct: 754  YDKLPAGQNAMVAIMSYSGYDIEDALVLNKASLDRGFGRCQVFHKHSAIIRKYPNGTHDR 813

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISV-SAISMATPE-- 1089
            I  P  + +  K +++H+ L+ DG+   G Q+   QV +NK  PT ++ + I++  P+  
Sbjct: 814  IGDPQRDPENGKVIWKHKILEDDGLAGVGCQVQSGQVYINKQTPTNALDNTIALGQPQTT 873

Query: 1090 ---YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVI 1146
               Y+  P++YK   P+Y++KV+++++  D  L+K+L RQTRRPE+GDKFSSRHGQKGV 
Sbjct: 874  ESGYRATPMTYKAPEPAYIDKVMLTNSDADQTLVKVLTRQTRRPELGDKFSSRHGQKGVC 933

Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G+I++QEDMPFN+ GICPDIIMNPHG 
Sbjct: 934  GVIIQQEDMPFNDIGICPDIIMNPHGF 960



 Score =  281 bits (718), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 124/191 (64%), Positives = 159/191 (83%)

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
            Y+  P++YK   P+Y++KV+++++  D  L+K+L RQTRRPE+GDKFSSRHGQKGV G+I
Sbjct: 877  YRATPMTYKAPEPAYIDKVMLTNSDADQTLVKVLTRQTRRPELGDKFSSRHGQKGVCGVI 936

Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
            ++QEDMPFN+ GICPDIIMNPHG+PSRMTVGK+IELL+GKAG++ G  + GT FGG+++ 
Sbjct: 937  IQQEDMPFNDIGICPDIIMNPHGFPSRMTVGKMIELLSGKAGVLRGTLEYGTCFGGSRVE 996

Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
            D+   L+ HGYNY GKD+  SGITGE LEAYI+ GP+YYQKLKHMV DK+HAR+RGPR V
Sbjct: 997  DMSRILVEHGYNYSGKDMLTSGITGEQLEAYIFFGPIYYQKLKHMVLDKMHARARGPRAV 1056

Query: 1362 LTRQPTGRRWK 1372
            LTRQPT  R +
Sbjct: 1057 LTRQPTEGRSR 1067



 Score =  206 bits (524), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 112/213 (52%), Positives = 142/213 (66%), Gaps = 8/213 (3%)

Query: 127 GLVKP-HIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQ 185
            +V P  +D  DY  N  ++   Q  A ++ D   LF     D+ + I DK++ K    Q
Sbjct: 365 AMVDPSQVDDRDYVGNKRLELAGQLLALLFED---LFKKFNSDLKLNI-DKVLKKPNRTQ 420

Query: 186 -FDIVNH--MRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRIN 242
            FD  N   M  D IT  +  A+ TGNW+++RFKMER GVT VLSRLS+IS LGMMTRI 
Sbjct: 421 EFDAYNQLSMHGDHITQGMVRALSTGNWSLKRFKMERAGVTHVLSRLSFISALGMMTRIT 480

Query: 243 SQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMY 302
           SQFEKTRKVSGPRSLQ SQ+GMLC SDTPEGEACGLVKNLALMTHITT+ +E  ++++ Y
Sbjct: 481 SQFEKTRKVSGPRSLQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTDEEEGPLIRLAY 540

Query: 303 NIGIEHIAMFNGEELSSPGVYLVFVNGILAGIT 335
             G+E +    G E+ +   YLV++NG + GIT
Sbjct: 541 AFGVEDVHTVTGREILAQDSYLVYINGSILGIT 573



 Score =  163 bits (412), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 79/132 (59%), Positives = 95/132 (71%), Gaps = 15/132 (11%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKR 751
           F+DFL  G +EY+DVNE NDS IAV E  I P  TTHLEI PFT+LG  AG+        
Sbjct: 645 FEDFLKAGYVEYVDVNEENDSLIAVYEKDIAPD-TTHLEIEPFTILGAVAGV-------- 695

Query: 752 FHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTI 811
                 +PYPHHNQ+PRNTYQCAMGKQA+G IGYNQ  RIDTL+Y +VY Q+PMV++KTI
Sbjct: 696 ------IPYPHHNQSPRNTYQCAMGKQAIGAIGYNQLQRIDTLLYLMVYPQQPMVKTKTI 749

Query: 812 RITNFHKLPAGK 823
            +  + KLPAG+
Sbjct: 750 ELIGYDKLPAGQ 761



 Score =  107 bits (267), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 47/91 (51%), Positives = 71/91 (78%)

Query: 443 KRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDR 502
           +R    +  P ++A + L++  +AHI V+N+ F+ KA+Y+A+M RR+++A+ DP  +DDR
Sbjct: 316 RRAGAARLPPHEEALEVLAAVVLAHISVVNLDFRPKAVYVAMMARRVLMAMVDPSQVDDR 375

Query: 503 DYYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
           DY GNKRLELAG LL+L+FED+FK+FNS+LK
Sbjct: 376 DYVGNKRLELAGQLLALLFEDLFKKFNSDLK 406



 Score = 92.0 bits (227), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/69 (60%), Positives = 56/69 (81%), Gaps = 1/69 (1%)

Query: 105 KLKDS-PEIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFY 163
           KL D  P I DKW+L+ +FLK KGLVK H+DS++YF++V++KK+++AN  I SDV+P FY
Sbjct: 34  KLTDPVPTIEDKWELLPAFLKVKGLVKQHLDSYNYFVDVDLKKIVEANQKITSDVEPWFY 93

Query: 164 LKYLDIHVG 172
           LKYLDI VG
Sbjct: 94  LKYLDIRVG 102



 Score = 82.0 bits (201), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/55 (69%), Positives = 45/55 (81%)

Query: 357 TPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKTE 411
           +PHECRLRDLTY A I VDIEYTRG Q V R ++ IGRMP+ML+S+KCVL  K+E
Sbjct: 117 SPHECRLRDLTYGANIFVDIEYTRGRQVVRRRNVPIGRMPVMLRSNKCVLYGKSE 171


>gi|444316230|ref|XP_004178772.1| hypothetical protein TBLA_0B04150 [Tetrapisispora blattae CBS 6284]
 gi|387511812|emb|CCH59253.1| hypothetical protein TBLA_0B04150 [Tetrapisispora blattae CBS 6284]
          Length = 1148

 Score =  344 bits (882), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 158/263 (60%), Positives = 203/263 (77%), Gaps = 3/263 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ  RIDTL+Y ++Y Q+PMV++KTI + N
Sbjct: 687  GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMIYPQQPMVKTKTIELIN 746

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+AVMSYSGYDIEDALI+NK+S+DRGFGRC   R +  +LK+YPN T D 
Sbjct: 747  YDKLPAGQNATVAVMSYSGYDIEDALILNKSSIDRGFGRCETRRKTTTILKRYPNHTQD- 805

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISM--ATPEY 1090
            I+G +   +  KP+++H AL  DG+   G ++   Q+ +NKS+PT +   +       +Y
Sbjct: 806  IIGGMRVDENGKPIWQHEALGPDGLGEVGMKVSSGQIYINKSIPTNTAEGLEAINTQSQY 865

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            KE PV Y+G  PS++++V++S +  D  LIK+LLRQ RRPE+GDKFSSRHGQKGV GLIV
Sbjct: 866  KETPVMYRGPEPSHVDQVMMSVSDNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCGLIV 925

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
            +QEDMPFN+ GI PDIIMNPHG 
Sbjct: 926  QQEDMPFNDQGINPDIIMNPHGF 948



 Score =  285 bits (728), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 129/202 (63%), Positives = 166/202 (82%)

Query: 1171 HGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSS 1230
             GL+  +  ++YKE PV Y+G  PS++++V++S +  D  LIK+LLRQ RRPE+GDKFSS
Sbjct: 854  EGLEAINTQSQYKETPVMYRGPEPSHVDQVMMSVSDNDQALIKVLLRQNRRPELGDKFSS 913

Query: 1231 RHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYK 1290
            RHGQKGV GLIV+QEDMPFN+ GI PDIIMNPHG+PSRMTVGK+IEL++GKAG++ G+ +
Sbjct: 914  RHGQKGVCGLIVQQEDMPFNDQGINPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGSLE 973

Query: 1291 EGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDK 1350
             GT FGG+KL ++ + L+  G+NY GKD+ YSGITGE L+AYI+ GP+YYQKLKHMV DK
Sbjct: 974  YGTCFGGSKLEEMSKILVDKGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDK 1033

Query: 1351 IHARSRGPRVVLTRQPTGRRWK 1372
            +HAR+RGPR VLTRQPT  R +
Sbjct: 1034 MHARARGPRAVLTRQPTEGRSR 1055



 Score =  186 bits (472), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 128/336 (38%), Positives = 188/336 (55%), Gaps = 32/336 (9%)

Query: 20  LKHHPIGTPGPAYIFFLLEGLQA---ILFLPLFKQVDFGDSKVVSLRELLSHVTYQKRLY 76
           LKH+ I    P  I     G+ +   IL L       + D   V+L E       + ++Y
Sbjct: 243 LKHNSISEDVPIAIVLKAAGIVSDLEILQLVCGNDSSYQDIFAVNLEE-----AAKFKIY 297

Query: 77  RLTVQPNWLGT-VKAVHGTYLTMVTDETSKLK---------DSPEIRDKWKLVLSFLKEK 126
                  ++GT VK +    LT + +    +          +  + R+K  L ++ +  +
Sbjct: 298 TQQQALEYIGTKVKTIRKQKLTALQEGIEAIATTVIAHLTVEELDFREK-ALYIAMMTRR 356

Query: 127 GLVKPH----IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPK-I 181
            ++  H    +D  DY  N  ++   Q  + ++ D   LF     D  + I DK++ K  
Sbjct: 357 VVMAIHNPKMVDDRDYVGNKRLELAGQLISLLFED---LFKKFTSDFKMSI-DKVLKKPN 412

Query: 182 KAAQFD--IVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMT 239
           +A ++D  +  ++  + IT+ L  +I TGNW+++RFKMER GVT VLSRLSYIS LGMMT
Sbjct: 413 RAMEYDALLSINVHCNNITSGLNRSISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMT 472

Query: 240 RINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLK 299
           RI+SQFEK+RKVSGPR+LQ SQ+GMLC +DTPEGEACGLVKNLALMTHITT+++E  + K
Sbjct: 473 RISSQFEKSRKVSGPRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEEDPIKK 532

Query: 300 IMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAGIT 335
           + Y +G+E I+  +   +     Y V +NG L G T
Sbjct: 533 LCYVLGVEDISSLDSATIHES--YGVHLNGTLVGTT 566



 Score =  164 bits (415), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 79/132 (59%), Positives = 95/132 (71%), Gaps = 15/132 (11%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKR 751
           FDDFL  G +EYLDVNE NDS IA+ E  I P +T HLEI PFT+LG  AG         
Sbjct: 638 FDDFLKLGLVEYLDVNEENDSFIALYEKDITPAMT-HLEIEPFTVLGAVAG--------- 687

Query: 752 FHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTI 811
                L+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ  RIDTL+Y ++Y Q+PMV++KTI
Sbjct: 688 -----LIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMIYPQQPMVKTKTI 742

Query: 812 RITNFHKLPAGK 823
            + N+ KLPAG+
Sbjct: 743 ELINYDKLPAGQ 754



 Score =  101 bits (251), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 45/91 (49%), Positives = 68/91 (74%)

Query: 443 KRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDR 502
           K  +  K T + +  + +++T IAH+ V  + F+ KA+Y+A+M RR+V+A+ +P M+DDR
Sbjct: 311 KTIRKQKLTALQEGIEAIATTVIAHLTVEELDFREKALYIAMMTRRVVMAIHNPKMVDDR 370

Query: 503 DYYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
           DY GNKRLELAG L+SL+FED+FK+F S+ K
Sbjct: 371 DYVGNKRLELAGQLISLLFEDLFKKFTSDFK 401



 Score = 84.0 bits (206), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 35/59 (59%), Positives = 50/59 (84%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           DKW L+ +FLK KGLVK H+DSF++F++V++KK+++AN  I SDVDP FYLK++DI +G
Sbjct: 44  DKWNLLPAFLKVKGLVKQHLDSFNFFVDVDLKKIIKANRLILSDVDPEFYLKFIDIRIG 102



 Score = 81.6 bits (200), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 35/49 (71%), Positives = 42/49 (85%)

Query: 358 PHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVL 406
           PHECRLRD+TYSAPI VDIEYTRG   V+  D+ IG+MPIML+S+KC+L
Sbjct: 116 PHECRLRDMTYSAPIYVDIEYTRGRNIVIHRDVEIGKMPIMLRSNKCIL 164


>gi|366997769|ref|XP_003683621.1| hypothetical protein TPHA_0A01020 [Tetrapisispora phaffii CBS 4417]
 gi|357521916|emb|CCE61187.1| hypothetical protein TPHA_0A01020 [Tetrapisispora phaffii CBS 4417]
          Length = 1142

 Score =  343 bits (881), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 158/262 (60%), Positives = 203/262 (77%), Gaps = 2/262 (0%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G IGYNQ  RIDTL+Y ++Y Q+PMV++KTI + +
Sbjct: 682  GLIPYPHHNQSPRNTYQCAMGKQAIGAIGYNQFKRIDTLLYLMIYPQQPMVKTKTIELID 741

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+AVMSYSGYDIEDAL++NKAS+DRGFGRC   R +  VLK+YPN T D 
Sbjct: 742  YDKLPAGQNATVAVMSYSGYDIEDALVLNKASIDRGFGRCETRRKTTTVLKRYPNHTQD- 800

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPT-ISVSAISMATPEYK 1091
            I+G +   +   P+++H AL  DG+   G ++   Q+ +NKS+PT  S S ++    +YK
Sbjct: 801  IIGGMRVDENNNPIWQHEALGPDGLGEVGVKVNSGQIYINKSVPTNASDSVLTSTQSQYK 860

Query: 1092 EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVE 1151
            E PV Y+  VPS++++V++S +  D  LIK+LLRQ RRPE+GDKFSSRHGQKGV G+IV 
Sbjct: 861  ETPVVYRSPVPSHIDQVMMSVSENDQALIKVLLRQNRRPELGDKFSSRHGQKGVCGIIVN 920

Query: 1152 QEDMPFNESGICPDIIMNPHGL 1173
             EDMPFN+ GI PDIIMNPHG 
Sbjct: 921  HEDMPFNDEGISPDIIMNPHGF 942



 Score =  283 bits (723), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 126/193 (65%), Positives = 161/193 (83%)

Query: 1180 TEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1239
            ++YKE PV Y+  VPS++++V++S +  D  LIK+LLRQ RRPE+GDKFSSRHGQKGV G
Sbjct: 857  SQYKETPVVYRSPVPSHIDQVMMSVSENDQALIKVLLRQNRRPELGDKFSSRHGQKGVCG 916

Query: 1240 LIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTK 1299
            +IV  EDMPFN+ GI PDIIMNPHG+PSRMTVGK+IEL++GKAG++ G+ + GT FGG+K
Sbjct: 917  IIVNHEDMPFNDEGISPDIIMNPHGFPSRMTVGKMIELVSGKAGVLNGSLEYGTCFGGSK 976

Query: 1300 LVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPR 1359
            L D+ + L+ +GYNY GKD+ YSG+TGE L+AYI+ GP+YYQKLKHMV DK+HAR+RGPR
Sbjct: 977  LEDMSQILVENGYNYSGKDMLYSGVTGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPR 1036

Query: 1360 VVLTRQPTGRRWK 1372
             VLTRQPT  R +
Sbjct: 1037 AVLTRQPTEGRSR 1049



 Score =  187 bits (475), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 105/206 (50%), Positives = 139/206 (67%), Gaps = 9/206 (4%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPK-IKAAQFD--IV 189
           +D  DY  N  ++   Q  + ++ D   LF     D    I DK++ K  +A ++D  + 
Sbjct: 362 VDDRDYVGNKRLELAGQLISLLFED---LFKKFNSDFKASI-DKVLKKPNRAMEYDALLS 417

Query: 190 NHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
            ++  + IT+ L  AI TGNW+++RFKMER GVT VLSRLSYIS LGMMTRI+SQFEK+R
Sbjct: 418 INVHSNNITSGLNRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSR 477

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHI 309
           KVSGPR+LQ SQ+GMLC +DTPEGEACGLVKNLALMTHITT+++E  + K+ Y +G+E I
Sbjct: 478 KVSGPRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEEDPIKKLCYMLGVEDI 537

Query: 310 AMFNGEELSSPGVYLVFVNGILAGIT 335
            + +   L     Y V +NG L G T
Sbjct: 538 TLIDSASLHLN--YGVHLNGTLIGTT 561



 Score =  157 bits (398), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 76/132 (57%), Positives = 94/132 (71%), Gaps = 15/132 (11%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKR 751
           FDDFL  G +EYLDVNE ND  IA+ E  +    +THLEI PFT+LG  AG         
Sbjct: 633 FDDFLKLGLVEYLDVNEENDCFIALYEKDL-SNRSTHLEIEPFTVLGAVAG--------- 682

Query: 752 FHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTI 811
                L+PYPHHNQ+PRNTYQCAMGKQA+G IGYNQ  RIDTL+Y ++Y Q+PMV++KTI
Sbjct: 683 -----LIPYPHHNQSPRNTYQCAMGKQAIGAIGYNQFKRIDTLLYLMIYPQQPMVKTKTI 737

Query: 812 RITNFHKLPAGK 823
            + ++ KLPAG+
Sbjct: 738 ELIDYDKLPAGQ 749



 Score =  101 bits (251), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 45/93 (48%), Positives = 70/93 (75%)

Query: 443 KRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDR 502
           K  +  K + + +  + +++T IAH+ V  + F+ KA+Y+A+M RR+V+A+ +P M+DDR
Sbjct: 306 KTIRRQKLSILQEGIEAIATTVIAHLTVEALDFREKALYIAMMTRRVVMAIENPKMVDDR 365

Query: 503 DYYGNKRLELAGSLLSLMFEDVFKRFNSELKET 535
           DY GNKRLELAG L+SL+FED+FK+FNS+ K +
Sbjct: 366 DYVGNKRLELAGQLISLLFEDLFKKFNSDFKAS 398



 Score = 85.1 bits (209), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 39/69 (56%), Positives = 54/69 (78%), Gaps = 1/69 (1%)

Query: 105 KLKDSPEI-RDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFY 163
           KL D+ +   DKW L+ +FLK KGLVK H+DSF+YF++ ++KK+++AN  I SDVDP FY
Sbjct: 30  KLTDAIDTAEDKWNLLPAFLKVKGLVKQHLDSFNYFVDKDLKKIIEANQVILSDVDPEFY 89

Query: 164 LKYLDIHVG 172
           LKY+DI +G
Sbjct: 90  LKYVDIRIG 98



 Score = 82.0 bits (201), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/49 (71%), Positives = 42/49 (85%)

Query: 358 PHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVL 406
           PHECRLRD+TYSAPI VDIEYTRG   ++  D+ IGRMPIML+S+KC+L
Sbjct: 111 PHECRLRDMTYSAPIYVDIEYTRGRNIIMHKDVEIGRMPIMLRSNKCIL 159


>gi|254573076|ref|XP_002493647.1| Second-largest subunit of RNA polymerase III [Komagataella pastoris
            GS115]
 gi|238033446|emb|CAY71468.1| Second-largest subunit of RNA polymerase III [Komagataella pastoris
            GS115]
 gi|328354525|emb|CCA40922.1| DNA-directed RNA polymerase II subunit B [Komagataella pastoris CBS
            7435]
          Length = 1158

 Score =  342 bits (877), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 161/268 (60%), Positives = 206/268 (76%), Gaps = 8/268 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G IGYNQ NRIDTL+Y +VY Q+PMV++KTI +  
Sbjct: 694  GLIPYPHHNQSPRNTYQCAMGKQAIGAIGYNQFNRIDTLLYLMVYPQQPMVKTKTIELIG 753

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+AVMSYSGYDIEDAL++NKAS+DRGFGRC V+R +  +LK+YPN T D 
Sbjct: 754  YDKLPAGQNATVAVMSYSGYDIEDALVLNKASIDRGFGRCQVFRKNTTLLKRYPNHTKD- 812

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPE--- 1089
            ILG +   D  +P+++HR+L  DG+   G  +   QV VNK +P  S  +I   TP+   
Sbjct: 813  ILGGMSVNDQGEPIFQHRSLGPDGLGEVGLPLESGQVYVNKFVPINSEESIIGQTPDDSQ 872

Query: 1090 ----YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV 1145
                ++E P+ Y+G  PSY++++++S    D  L+K LLRQTRRPE+GDKFSSRHGQKGV
Sbjct: 873  RKEQHRETPMVYRGPEPSYIDQMMMSLGENDQVLVKALLRQTRRPELGDKFSSRHGQKGV 932

Query: 1146 IGLIVEQEDMPFNESGICPDIIMNPHGL 1173
             G+IV+QED+PFN+ GI PDIIMNPHG 
Sbjct: 933  CGIIVQQEDLPFNDDGISPDIIMNPHGF 960



 Score =  273 bits (699), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 123/195 (63%), Positives = 160/195 (82%)

Query: 1178 RITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV 1237
            R  +++E P+ Y+G  PSY++++++S    D  L+K LLRQTRRPE+GDKFSSRHGQKGV
Sbjct: 873  RKEQHRETPMVYRGPEPSYIDQMMMSLGENDQVLVKALLRQTRRPELGDKFSSRHGQKGV 932

Query: 1238 IGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGG 1297
             G+IV+QED+PFN+ GI PDIIMNPHG+PSRMTVGK+IEL++GKAG+++G+ + GT FGG
Sbjct: 933  CGIIVQQEDLPFNDDGISPDIIMNPHGFPSRMTVGKMIELISGKAGVLDGSLQYGTCFGG 992

Query: 1298 TKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRG 1357
            + L ++ + LI  G++Y GKD  YSGITGE L+AYI+ GP+YYQKLKHMV DK+HARSRG
Sbjct: 993  SDLKEMSQILIDKGFSYSGKDQLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARSRG 1052

Query: 1358 PRVVLTRQPTGRRWK 1372
            PR VLTRQPT  R +
Sbjct: 1053 PRAVLTRQPTEGRSR 1067



 Score =  195 bits (495), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 107/205 (52%), Positives = 142/205 (69%), Gaps = 7/205 (3%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKI-KAAQFD--IV 189
           ID  DY  N  ++   Q  + ++ D   LF     D    I DKI+ K  +A++FD  + 
Sbjct: 372 IDDRDYVGNKRLELAGQLMSLLFED---LFKKFNSDFKANI-DKILKKPNRASEFDALLS 427

Query: 190 NHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
            ++  + IT  +  AI TGNW+++RFKMER GVT VLSRLSYIS LGMMTRI+SQFEK+R
Sbjct: 428 INVHSNNITTGINRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSR 487

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHI 309
           KVSGPR+LQ SQ+GMLC SDTPEGEACGLVKNLALMTHITT+++E+ + KI Y +G E I
Sbjct: 488 KVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTDDEEEPVRKICYLLGAEDI 547

Query: 310 AMFNGEELSSPGVYLVFVNGILAGI 334
            + +   +SS   + V++NG + G+
Sbjct: 548 KIVDSSVISSRSNFGVYLNGTMIGV 572



 Score =  163 bits (413), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 81/136 (59%), Positives = 97/136 (71%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G  +FD FL  G +EYLDVNE NDS IA+ E  I+   TTHLEI PFT+LG  AG     
Sbjct: 641 GEWQFDSFLTNGLVEYLDVNEENDSLIALYEKDIK-NYTTHLEIEPFTVLGAVAG----- 694

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQA+G IGYNQ NRIDTL+Y +VY Q+PMV+
Sbjct: 695 ---------LIPYPHHNQSPRNTYQCAMGKQAIGAIGYNQFNRIDTLLYLMVYPQQPMVK 745

Query: 808 SKTIRITNFHKLPAGK 823
           +KTI +  + KLPAG+
Sbjct: 746 TKTIELIGYDKLPAGQ 761



 Score =  107 bits (267), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 50/114 (43%), Positives = 81/114 (71%), Gaps = 1/114 (0%)

Query: 421 TSSVTMHSQRTSPLLSCKKLR-QKRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKA 479
            + + +H+QR +     K+++  +R    K +   +  + +++T +AHI V ++ F+ KA
Sbjct: 293 AAKLDIHTQRDALEYIGKRVKTMRRLGAPKLSIYQEGVEAIANTIVAHISVEDLNFREKA 352

Query: 480 MYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
           +YLA+M RR+V+A+ +P M+DDRDY GNKRLELAG L+SL+FED+FK+FNS+ K
Sbjct: 353 IYLAIMTRRVVMAMHNPTMIDDRDYVGNKRLELAGQLMSLLFEDLFKKFNSDFK 406



 Score = 84.7 bits (208), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 36/59 (61%), Positives = 49/59 (83%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           DKW L+ +FL+ KGLVK H+DSF+YF++ ++KK+++AN  + SDVDP FYLKYLDI VG
Sbjct: 43  DKWNLLPAFLQVKGLVKQHLDSFNYFVDKDLKKIIKANEKVLSDVDPEFYLKYLDIRVG 101



 Score = 80.1 bits (196), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 35/59 (59%), Positives = 46/59 (77%)

Query: 358 PHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKTEYTSSS 416
           PH+CRL D TYSAPI VD+EYTRG + ++  DL IG+MPIML+S+KC+L +K E   +S
Sbjct: 118 PHQCRLSDTTYSAPIYVDVEYTRGRKIIMHRDLEIGKMPIMLRSNKCILESKDESQMAS 176


>gi|406863176|gb|EKD16224.1| DNA-directed RNA polymerase III polypeptide [Marssonina brunnea f.
            sp. 'multigermtubi' MB_m1]
          Length = 1214

 Score =  342 bits (876), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 169/309 (54%), Positives = 218/309 (70%), Gaps = 8/309 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ +RIDTL+Y +VY Q+PMV+++TI + +
Sbjct: 747  GLIPYPHHNQSPRNTYQCAMGKQAIGSIAYNQFSRIDTLLYLMVYPQQPMVKTRTIELIH 806

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+AVMSYSGYDIEDAL++NK+S DRGFGRC V+R +   LK+YPN+++DR
Sbjct: 807  YDKLPAGQNATVAVMSYSGYDIEDALVLNKSSCDRGFGRCQVFRKNMISLKKYPNRSYDR 866

Query: 1033 ILGPLL-EADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATP 1088
            I   +L E D  KP+ +HR L  DGI A GE+I   +V  NK  P  ++S        T 
Sbjct: 867  IGDRVLDEKDPSKPIAKHRILTSDGIAAVGERIFSGEVFCNKETPLNTISTGIGSDYGTN 926

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
            +YK  P SY+    +Y++KV+ + N  D  +IK+  RQTRRPE+GDKFSSRHGQKGV+G+
Sbjct: 927  DYKPAPASYRAYDFAYIDKVMTTQNDRDDTIIKVQTRQTRRPELGDKFSSRHGQKGVVGI 986

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLE--KVLVSSNS 1206
            IV QEDMPF +SG+CPDIIMNPHG      + +  E+     G +   LE       SN 
Sbjct: 987  IVNQEDMPFADSGVCPDIIMNPHGFPSRMTVGKMLELLSGKAGVLNGTLEYGTAFGGSNV 1046

Query: 1207 ED--AFLIK 1213
            +D  A LIK
Sbjct: 1047 DDMGAILIK 1055



 Score =  271 bits (692), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 121/192 (63%), Positives = 155/192 (80%)

Query: 1181 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1240
            +YK  P SY+    +Y++KV+ + N  D  +IK+  RQTRRPE+GDKFSSRHGQKGV+G+
Sbjct: 927  DYKPAPASYRAYDFAYIDKVMTTQNDRDDTIIKVQTRQTRRPELGDKFSSRHGQKGVVGI 986

Query: 1241 IVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKL 1300
            IV QEDMPF +SG+CPDIIMNPHG+PSRMTVGK++ELL+GKAG++ G  + GTAFGG+ +
Sbjct: 987  IVNQEDMPFADSGVCPDIIMNPHGFPSRMTVGKMLELLSGKAGVLNGTLEYGTAFGGSNV 1046

Query: 1301 VDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRV 1360
             D+   LI++G++Y GKD   SGITGE L AYI+ GP+YYQKLKHMVQDK+H+RSRGPR 
Sbjct: 1047 DDMGAILIKNGFSYSGKDFVTSGITGEPLPAYIFFGPIYYQKLKHMVQDKMHSRSRGPRA 1106

Query: 1361 VLTRQPTGRRWK 1372
            +LTRQPT  R +
Sbjct: 1107 ILTRQPTEGRSR 1118



 Score =  209 bits (533), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 115/225 (51%), Positives = 152/225 (67%), Gaps = 11/225 (4%)

Query: 118 LVLSFLKEKGLVKPH----IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGI 173
           L + F+  + L+  H    +D  DY  N  ++   Q  + ++ D   LF     D+ + I
Sbjct: 406 LYICFMVRRVLMANHDPKLVDDRDYVGNKRLELAGQLLSLLFED---LFKKFNSDLKMNI 462

Query: 174 ADKIIPKI-KAAQFDIVNHMRQ--DTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLS 230
            DK++ K  +  QFD  NH++   + IT  +  AI TGNW+++RFKMER GVT VLSRLS
Sbjct: 463 -DKVLKKPNRTMQFDAFNHLQSHGNHITQGMNRAISTGNWSVKRFKMERAGVTHVLSRLS 521

Query: 231 YISGLGMMTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITT 290
           YIS LGMMTRI+SQFEKTRKVSGPR+LQ SQ+GMLCPSDTPEGEACGLVKNLALMTHITT
Sbjct: 522 YISALGMMTRISSQFEKTRKVSGPRALQPSQFGMLCPSDTPEGEACGLVKNLALMTHITT 581

Query: 291 ENDEKNMLKIMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAGIT 335
            + E+ + K+++ +G E I   +G+E+   G Y+VFVNG    +T
Sbjct: 582 NDLEEPVKKLVFVLGAEDIVSMSGKEIYEDGAYVVFVNGTPLALT 626



 Score =  161 bits (407), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 77/132 (58%), Positives = 97/132 (73%), Gaps = 15/132 (11%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKR 751
           FDDFLY G +EY+DVNE NDS+IA+ E  I    +THLEI PFT+LG  AG         
Sbjct: 698 FDDFLYRGFVEYVDVNEENDSNIALYEKEIDE-TSTHLEIEPFTILGAVAG--------- 747

Query: 752 FHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTI 811
                L+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ +RIDTL+Y +VY Q+PMV+++TI
Sbjct: 748 -----LIPYPHHNQSPRNTYQCAMGKQAIGSIAYNQFSRIDTLLYLMVYPQQPMVKTRTI 802

Query: 812 RITNFHKLPAGK 823
            + ++ KLPAG+
Sbjct: 803 ELIHYDKLPAGQ 814



 Score =  106 bits (264), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 48/85 (56%), Positives = 66/85 (77%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           ++  V DA + LSS  I H+PV  + F+ KA+Y+  M+RR+++A  DP ++DDRDY GNK
Sbjct: 375 RRNHVADALEALSSIIITHVPVHGLDFRPKALYICFMVRRVLMANHDPKLVDDRDYVGNK 434

Query: 509 RLELAGSLLSLMFEDVFKRFNSELK 533
           RLELAG LLSL+FED+FK+FNS+LK
Sbjct: 435 RLELAGQLLSLLFEDLFKKFNSDLK 459



 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 34/65 (52%), Positives = 51/65 (78%)

Query: 113 RDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           +DKW L+ +FLK KGLVK HIDSF++FI  EIK +++AN  + SDVD  F+L+Y D+++G
Sbjct: 90  KDKWNLLPAFLKVKGLVKQHIDSFNFFIETEIKDIVKANKRVTSDVDQHFFLEYTDVNIG 149

Query: 173 IADKI 177
           + D++
Sbjct: 150 MPDRV 154



 Score = 81.6 bits (200), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 47/60 (78%)

Query: 347 EESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVL 406
           ++  N  R  TP+ECRLRDLTY+API V+I+Y RG Q + R+D+ IGR+PIML+SSKC L
Sbjct: 156 QDDRNLQRAITPNECRLRDLTYAAPIRVNIKYIRGKQVIHRTDIAIGRLPIMLRSSKCRL 215


>gi|302307227|ref|NP_983821.2| ADL275Cp [Ashbya gossypii ATCC 10895]
 gi|299788898|gb|AAS51645.2| ADL275Cp [Ashbya gossypii ATCC 10895]
 gi|374107033|gb|AEY95941.1| FADL275Cp [Ashbya gossypii FDAG1]
          Length = 1141

 Score =  341 bits (875), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 153/262 (58%), Positives = 206/262 (78%), Gaps = 2/262 (0%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ  RIDTL+Y ++Y Q+PMV+SKTI + +
Sbjct: 681  GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMIYPQQPMVKSKTIELID 740

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+AVMSYSGYDIEDAL++NK+S+DRGFGRC   + +  +LK+YPN T D 
Sbjct: 741  YDKLPAGQNATVAVMSYSGYDIEDALVINKSSIDRGFGRCETRKKTTTILKRYPNHTQD- 799

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPT-ISVSAISMATPEYK 1091
            I+G +   +  +P+++H++L  DG+   G ++   Q+ +NKS+PT  S S ++    +Y+
Sbjct: 800  IIGGMRVDENGEPIWQHQSLGPDGLGEVGMKVTSGQIYINKSIPTNASDSVLNQVQSQYR 859

Query: 1092 EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVE 1151
            E P+ Y+   PS++++V++S +  D  LIK+LLRQ RRPE+GDKFSSRHGQKGV G+IV+
Sbjct: 860  EAPIIYRAPEPSHIDQVMMSVSDNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCGIIVQ 919

Query: 1152 QEDMPFNESGICPDIIMNPHGL 1173
            QEDMPFN+ GICPDIIMNPHG 
Sbjct: 920  QEDMPFNDQGICPDIIMNPHGF 941



 Score =  283 bits (725), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 123/193 (63%), Positives = 162/193 (83%)

Query: 1180 TEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1239
            ++Y+E P+ Y+   PS++++V++S +  D  LIK+LLRQ RRPE+GDKFSSRHGQKGV G
Sbjct: 856  SQYREAPIIYRAPEPSHIDQVMMSVSDNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCG 915

Query: 1240 LIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTK 1299
            +IV+QEDMPFN+ GICPDIIMNPHG+PSRMTVGK++EL++GKAG++ G  + GT FGG++
Sbjct: 916  IIVQQEDMPFNDQGICPDIIMNPHGFPSRMTVGKMLELVSGKAGVLNGTLEYGTCFGGSQ 975

Query: 1300 LVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPR 1359
            L D+ E L+ +G+NY GKD+ YSGITGE L+AY++ GP+YYQKLKHMV DK+HAR+RGPR
Sbjct: 976  LADMSEILVNNGFNYSGKDMLYSGITGECLQAYVFFGPIYYQKLKHMVLDKMHARARGPR 1035

Query: 1360 VVLTRQPTGRRWK 1372
             VLTRQPT  R +
Sbjct: 1036 AVLTRQPTEGRSR 1048



 Score =  187 bits (475), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 122/333 (36%), Positives = 189/333 (56%), Gaps = 26/333 (7%)

Query: 20  LKHHPIGTPGPAYIFFLLEGLQAILFLPLFKQVDFGDSKVVSLRELLSHVTYQKRLYRLT 79
           LKH+ I    P  I  +L+    +  L + + V   DS    +  +      +  +Y   
Sbjct: 237 LKHNSIAEEVP--IVIVLKACGIVSDLEIMQLVCGNDSSYQDIFAINFEEASKMNIYTQQ 294

Query: 80  VQPNWLGT-VKAVHGTYLTMVTDETSKLK---------DSPEIRDKWKLVLSFLKEKGLV 129
               ++GT VK +    LT++ +    +          ++ + R+K  L ++ +  + ++
Sbjct: 295 QALEYIGTKVKTIRRQKLTVLQEGIEAIATTVIAHLTVEALDFREK-ALYVAMMTRRVIM 353

Query: 130 KPH----IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPK-IKAA 184
             H    +D  DY  N  ++   Q  + ++ D+    + K+ +      DK++ K  +A 
Sbjct: 354 AIHNPKMVDDRDYVGNKRLELAGQLMSLLFEDL----FKKFNNDFKASIDKVLKKPNRAE 409

Query: 185 QFD--IVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRIN 242
            +D  +  ++  + IT+ L  AI TGNW+++RFKMER GVT VLSRLSYIS LGMMTRI+
Sbjct: 410 MYDALLSINVHSNNITSGLNRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRIS 469

Query: 243 SQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMY 302
           SQFEK+RKVSGPR+LQ SQ+GMLC SDTPEGEACGLVKNLALMTHITT+++E+ +  + Y
Sbjct: 470 SQFEKSRKVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTDDEEEPIKNLCY 529

Query: 303 NIGIEHIAMFNGEELSSPGVYLVFVNGILAGIT 335
            +G+E I + +   +     Y V++NG + G T
Sbjct: 530 LLGVEDITLLDSASIHLN--YGVYLNGTIIGTT 560



 Score =  166 bits (419), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 81/136 (59%), Positives = 98/136 (72%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G  +FDDFL  G +EYLDVNE NDS+IA+ E  I  G TTHLEI PFT+LG  AG     
Sbjct: 628 GELQFDDFLKLGLVEYLDVNEENDSYIALYEKDIEEG-TTHLEIEPFTVLGAVAG----- 681

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ  RIDTL+Y ++Y Q+PMV+
Sbjct: 682 ---------LIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMIYPQQPMVK 732

Query: 808 SKTIRITNFHKLPAGK 823
           SKTI + ++ KLPAG+
Sbjct: 733 SKTIELIDYDKLPAGQ 748



 Score =  100 bits (250), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 48/115 (41%), Positives = 81/115 (70%), Gaps = 2/115 (1%)

Query: 421 TSSVTMHSQRTSPLLSCKKLRQKRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAM 480
            S + +++Q+ +      K++  R Q  K T + +  + +++T IAH+ V  + F+ KA+
Sbjct: 285 ASKMNIYTQQQALEYIGTKVKTIRRQ--KLTVLQEGIEAIATTVIAHLTVEALDFREKAL 342

Query: 481 YLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELKET 535
           Y+A+M RR+++A+ +P M+DDRDY GNKRLELAG L+SL+FED+FK+FN++ K +
Sbjct: 343 YVAMMTRRVIMAIHNPKMVDDRDYVGNKRLELAGQLMSLLFEDLFKKFNNDFKAS 397



 Score = 86.7 bits (213), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 37/59 (62%), Positives = 50/59 (84%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           DKW L+ +FLK KGLVK H+DSF+YF++V++KK+++AN  + SDVDP FYLKY+DI VG
Sbjct: 39  DKWHLLPAFLKVKGLVKQHLDSFNYFVDVDLKKIIKANEMVLSDVDPEFYLKYVDIRVG 97



 Score = 84.0 bits (206), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 37/56 (66%), Positives = 45/56 (80%)

Query: 356 TTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKTE 411
           T PHECRLRD+TYSAPI VDIEYTRG   V+  D+ IG+MPIML+S+KC+L   +E
Sbjct: 108 TPPHECRLRDMTYSAPIFVDIEYTRGRSIVLHKDVEIGKMPIMLRSNKCILNGASE 163


>gi|19114602|ref|NP_593690.1| DNA-directed RNA polymerase III complex subunit Rpc2
            [Schizosaccharomyces pombe 972h-]
 gi|1710663|sp|Q10233.1|RPC2_SCHPO RecName: Full=DNA-directed RNA polymerase III subunit RPC2; Short=RNA
            polymerase III subunit 2; Short=RNA polymerase III
            subunit C2; AltName: Full=C128; AltName:
            Full=DNA-directed RNA polymerase III 130 kDa polypeptide;
            AltName: Full=RPC130
 gi|1204209|emb|CAA93558.1| DNA-directed RNA polymerase III complex subunit Rpc2
            [Schizosaccharomyces pombe]
 gi|76782167|gb|ABA54854.1| RNA polymerase III large subunit Rpc2 [Schizosaccharomyces pombe]
          Length = 1165

 Score =  341 bits (874), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 153/267 (57%), Positives = 201/267 (75%), Gaps = 6/267 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ  RIDTL+Y +VY Q+PMV++KTI +  
Sbjct: 699  GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLQRIDTLLYLMVYPQQPMVKTKTIELIG 758

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+A+MSYSGYDIEDAL++NK+S+DRGFGRC V+     ++++YPN THDR
Sbjct: 759  YDKLPAGQNATVAIMSYSGYDIEDALVLNKSSIDRGFGRCQVFHKHSVIVRKYPNGTHDR 818

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPT------ISVSAISMA 1086
            I  P  + +T + V++H  ++ DG+   G ++   Q+ VNK  PT      I++      
Sbjct: 819  IGDPQRDPETGEVVWKHGVVEDDGLAGVGCRVQPGQIYVNKQTPTNALDNSITLGHTQTV 878

Query: 1087 TPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVI 1146
               YK  P++YK   P Y++KV++++   D  LIK+L+RQTRRPE+GDKFSSRHGQKGV 
Sbjct: 879  ESGYKATPMTYKAPEPGYIDKVMLTTTDSDQTLIKVLMRQTRRPELGDKFSSRHGQKGVC 938

Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G+IV+QEDMPFN+ GICPDIIMNPHG 
Sbjct: 939  GVIVQQEDMPFNDQGICPDIIMNPHGF 965



 Score =  286 bits (731), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 128/189 (67%), Positives = 155/189 (82%)

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
            YK  P++YK   P Y++KV++++   D  LIK+L+RQTRRPE+GDKFSSRHGQKGV G+I
Sbjct: 882  YKATPMTYKAPEPGYIDKVMLTTTDSDQTLIKVLMRQTRRPELGDKFSSRHGQKGVCGVI 941

Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
            V+QEDMPFN+ GICPDIIMNPHG+PSRMTVGK+IELL+GK G++ G  + GT FGGTK+ 
Sbjct: 942  VQQEDMPFNDQGICPDIIMNPHGFPSRMTVGKMIELLSGKVGVLRGTLEYGTCFGGTKVE 1001

Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
            D    L+ HGYNY GKD+  SGITGE LEAYI+ GP+YYQKLKHMV DK+HAR+RGPR V
Sbjct: 1002 DASRILVEHGYNYSGKDMLTSGITGETLEAYIFMGPIYYQKLKHMVMDKMHARARGPRAV 1061

Query: 1362 LTRQPTGRR 1370
            LTRQPT  R
Sbjct: 1062 LTRQPTEGR 1070



 Score =  215 bits (548), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 116/213 (54%), Positives = 147/213 (69%), Gaps = 8/213 (3%)

Query: 127 GLVKP-HIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKI-KAA 184
            +V P  +D  DY  N  ++   Q  A ++ D   LF     D+ + I DK++ K  +  
Sbjct: 370 AMVDPLQVDDRDYVGNKRLELAGQLLALLFED---LFKKFNSDLKLNI-DKVLKKPHRTQ 425

Query: 185 QFDIVNHM--RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRIN 242
           +FD  N +    D IT  +  A+ TGNW+++RFKMER GVT VLSRLSYIS LGMMTRI 
Sbjct: 426 EFDAYNQLTVHSDHITQGMVRALSTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRIT 485

Query: 243 SQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMY 302
           SQFEKTRKVSGPRSLQ SQ+GMLC SDTPEGEACGLVKNLALMTHITT+ +E+ ++K+ Y
Sbjct: 486 SQFEKTRKVSGPRSLQASQFGMLCTSDTPEGEACGLVKNLALMTHITTDEEEEPIIKLAY 545

Query: 303 NIGIEHIAMFNGEELSSPGVYLVFVNGILAGIT 335
             GIE I + +G EL S G YLV++NG + GI+
Sbjct: 546 AFGIEDIHVISGRELHSHGTYLVYLNGAILGIS 578



 Score =  160 bits (406), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 78/132 (59%), Positives = 95/132 (71%), Gaps = 15/132 (11%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKR 751
           F+DFL +G +EY+DVNE NDS I+V E  I P  TTHLEI PFT+LG  AG         
Sbjct: 650 FEDFLKQGLVEYVDVNEENDSLISVYERDITPD-TTHLEIEPFTILGAVAG--------- 699

Query: 752 FHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTI 811
                L+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ  RIDTL+Y +VY Q+PMV++KTI
Sbjct: 700 -----LIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLQRIDTLLYLMVYPQQPMVKTKTI 754

Query: 812 RITNFHKLPAGK 823
            +  + KLPAG+
Sbjct: 755 ELIGYDKLPAGQ 766



 Score =  104 bits (260), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 45/82 (54%), Positives = 66/82 (80%)

Query: 452 PVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLE 511
           P ++A + L++  +AHI V N+ F+ KA+Y+ +M RR+++A+ DP  +DDRDY GNKRLE
Sbjct: 330 PHEEALEVLAAVVLAHINVFNLEFRPKAVYIGIMARRVLMAMVDPLQVDDRDYVGNKRLE 389

Query: 512 LAGSLLSLMFEDVFKRFNSELK 533
           LAG LL+L+FED+FK+FNS+LK
Sbjct: 390 LAGQLLALLFEDLFKKFNSDLK 411



 Score = 92.8 bits (229), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 42/69 (60%), Positives = 56/69 (81%), Gaps = 1/69 (1%)

Query: 105 KLKDS-PEIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFY 163
           KL D  P I DKW+L+ +FLK KGLVK H+DS++YF++V++KK++QAN  + SDV+P FY
Sbjct: 39  KLADPVPTIEDKWQLLPAFLKVKGLVKQHLDSYNYFVDVDLKKIVQANEKVTSDVEPWFY 98

Query: 164 LKYLDIHVG 172
           LKYLDI VG
Sbjct: 99  LKYLDIRVG 107



 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/55 (69%), Positives = 44/55 (80%)

Query: 357 TPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKTE 411
           +PHECRLRDLTY A I VDIEYTRG Q V R ++ IGRMP+ML+S+KCVL  K E
Sbjct: 122 SPHECRLRDLTYGANIYVDIEYTRGKQVVRRRNVPIGRMPVMLRSNKCVLSGKNE 176


>gi|68490742|ref|XP_710813.1| hypothetical protein CaO19.13269 [Candida albicans SC5314]
 gi|68490765|ref|XP_710802.1| hypothetical protein CaO19.5847 [Candida albicans SC5314]
 gi|46432047|gb|EAK91554.1| hypothetical protein CaO19.5847 [Candida albicans SC5314]
 gi|46432059|gb|EAK91565.1| hypothetical protein CaO19.13269 [Candida albicans SC5314]
 gi|238879996|gb|EEQ43634.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Candida albicans
            WO-1]
          Length = 1157

 Score =  341 bits (874), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 163/267 (61%), Positives = 202/267 (75%), Gaps = 7/267 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ  RIDTL+Y +VY Q+PMV++KTI +  
Sbjct: 694  GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFRRIDTLLYFMVYPQQPMVKTKTIELIE 753

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+AVMSYSGYDIEDAL++NKASLDRGFGRC V R +   LK+YPN T D 
Sbjct: 754  YDKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCQVVRKNTVQLKKYPNHTQD- 812

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPE--- 1089
            IL  +   +  KP+++H+AL  DG+   G +I   QV  NK +PT S  +   A  E   
Sbjct: 813  ILAGMRVDENNKPIFQHQALGPDGLGEVGSRIFNGQVFANKCVPTNSGDSTLGAQQEQRA 872

Query: 1090 ---YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVI 1146
               ++E P  YKG  PSY+++V++S +  D  LIK+LLRQTRRPE+GDKFSSRHGQKGV 
Sbjct: 873  AESHREAPAFYKGPEPSYIDQVMMSVSDNDQALIKVLLRQTRRPELGDKFSSRHGQKGVC 932

Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G+IV+QED+PFN+SGI PDIIMNPHG 
Sbjct: 933  GIIVQQEDLPFNDSGISPDIIMNPHGF 959



 Score =  281 bits (719), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 127/191 (66%), Positives = 161/191 (84%)

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
            ++E P  YKG  PSY+++V++S +  D  LIK+LLRQTRRPE+GDKFSSRHGQKGV G+I
Sbjct: 876  HREAPAFYKGPEPSYIDQVMMSVSDNDQALIKVLLRQTRRPELGDKFSSRHGQKGVCGII 935

Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
            V+QED+PFN+SGI PDIIMNPHG+PSRMTVGK+IEL++GKAG++ G+ + GT FGG+KL 
Sbjct: 936  VQQEDLPFNDSGISPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGSLEYGTCFGGSKLE 995

Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
            D+ + LI  G++Y GKD+ YSGITGE L+AYI+ GP+YYQKLKHMV DK+HAR+RGPR V
Sbjct: 996  DMSKILIEKGFSYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAV 1055

Query: 1362 LTRQPTGRRWK 1372
            LTRQPT  R +
Sbjct: 1056 LTRQPTEGRSR 1066



 Score =  187 bits (476), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 131/337 (38%), Positives = 183/337 (54%), Gaps = 29/337 (8%)

Query: 20  LKHHPIGTPGPAYIFFLLEGLQA---ILFLPLFKQVDFGDSKVVSLREL--LSHVTYQKR 74
           LKH+ I    P  I     G+ +   IL L      ++ D  VV+  E   L   T Q+ 
Sbjct: 241 LKHNSISEDIPIVIILKAAGIVSDLEILQLVCGSDSNYQDLFVVNFEEAARLEVFTQQQA 300

Query: 75  LY---------RLTVQPNWLGTVKAVHGTYLTMVTDETSKLKDSPEIRDKWKLVLSFLKE 125
           LY         R    P      + +     T++   T       + R+K  L ++ +  
Sbjct: 301 LYYVGKRVKTIRRAGAPKLSQLQEGIEAIATTIIAHLTVS---DLQFREK-ALYIATMAR 356

Query: 126 KGLVKPH----IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPK- 180
           + ++  H    +D  DY  N  ++   Q  + ++ D   LF     D    I DK++ K 
Sbjct: 357 RVVMAMHNPKMVDDRDYVGNKRLELAGQLMSLLFED---LFKKFNSDFKANI-DKVLKKP 412

Query: 181 IKAAQFD--IVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMM 238
            + ++FD  +  ++  + IT  L  AI TGNW+++RFKMER GVT VLSRLSYIS LGMM
Sbjct: 413 SRTSEFDALLSINIHSNNITMGLNRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMM 472

Query: 239 TRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNML 298
           TRI+SQFEK+RKVSGPR+LQ SQ+GMLC +DTPEGEACGLVKNLALMTHITT+++E  + 
Sbjct: 473 TRISSQFEKSRKVSGPRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEEAPVK 532

Query: 299 KIMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAGIT 335
           K+   +G E I   +   L   G + V++NG L G T
Sbjct: 533 KLCIALGCEPIFALDSATLHVDGNFGVYLNGTLIGTT 569



 Score =  160 bits (405), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 80/135 (59%), Positives = 95/135 (70%), Gaps = 17/135 (12%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGI--RPG-VTTHLEIAPFTLLGVCAGIELLQY 748
           FDDFL  G +EYLDVNE NDS IA+ E  I   PG + THLEI PFT+LG  AG      
Sbjct: 641 FDDFLTHGLVEYLDVNEENDSLIALYEDDITANPGAIVTHLEIEPFTVLGAVAG------ 694

Query: 749 NKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVES 808
                   L+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ  RIDTL+Y +VY Q+PMV++
Sbjct: 695 --------LIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFRRIDTLLYFMVYPQQPMVKT 746

Query: 809 KTIRITNFHKLPAGK 823
           KTI +  + KLPAG+
Sbjct: 747 KTIELIEYDKLPAGQ 761



 Score =  102 bits (255), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 45/91 (49%), Positives = 70/91 (76%)

Query: 443 KRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDR 502
           +R    K + + +  + +++T IAH+ V +++F+ KA+Y+A M RR+V+A+ +P M+DDR
Sbjct: 312 RRAGAPKLSQLQEGIEAIATTIIAHLTVSDLQFREKALYIATMARRVVMAMHNPKMVDDR 371

Query: 503 DYYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
           DY GNKRLELAG L+SL+FED+FK+FNS+ K
Sbjct: 372 DYVGNKRLELAGQLMSLLFEDLFKKFNSDFK 402



 Score = 88.2 bits (217), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 43/80 (53%), Positives = 54/80 (67%), Gaps = 5/80 (6%)

Query: 334 ITCHHKEVCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIG 393
           I   HK   KP ++E         PHECRLRDLTYSAPI VD+EYTRG + +  +DL IG
Sbjct: 95  IRVGHKSTSKPGVKEVI-----LPPHECRLRDLTYSAPIYVDVEYTRGRKIIRHNDLEIG 149

Query: 394 RMPIMLQSSKCVLRNKTEYT 413
           RMP+ML+S+KC+L   +E T
Sbjct: 150 RMPVMLRSNKCMLEGMSEAT 169



 Score = 87.0 bits (214), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 42/84 (50%), Positives = 59/84 (70%), Gaps = 6/84 (7%)

Query: 99  VTDETSKLKDSPEIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDV 158
           +TDE +  KD      KW L+ +FLK KGLVK H+DS++YF++V++KK+++AN  + SDV
Sbjct: 31  LTDEINTAKD------KWNLLPAFLKVKGLVKQHLDSYNYFVDVDLKKIIKANELVLSDV 84

Query: 159 DPLFYLKYLDIHVGIADKIIPKIK 182
           DP FY+KYLDI VG      P +K
Sbjct: 85  DPEFYVKYLDIRVGHKSTSKPGVK 108


>gi|78190669|gb|ABB29656.1| RNA polymerase III second largest subunit [Suberites fuscus]
          Length = 238

 Score =  340 bits (873), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 160/238 (67%), Positives = 192/238 (80%), Gaps = 4/238 (1%)

Query: 934  KQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGQNATIAVMSYSGYD 993
            KQAMG I YNQQ RIDT+MY LVY Q P+V+SKTI +  F KLPAGQNA++AVMSYSGYD
Sbjct: 1    KQAMGSIAYNQQTRIDTIMYLLVYPQAPLVKSKTIDLIQFDKLPAGQNASVAVMSYSGYD 60

Query: 994  IEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRILGPLLEADTRKPVYRHRALD 1053
            IEDALI+NKASLDRGFGRCLVYR   C LK+Y NQT DRILGP  EADT KP++RH  LD
Sbjct: 61   IEDALILNKASLDRGFGRCLVYRKQTCSLKRYANQTFDRILGPSREADTGKPIWRHAVLD 120

Query: 1054 QDGIVAPGEQICERQVLVNKSMP----TISVSAISMATPEYKEVPVSYKGSVPSYLEKVL 1109
            QDGI APGE+I  +Q++VNKS+P    ++  +   M    YK+ P+SYKG   S +E+VL
Sbjct: 121  QDGICAPGERILNKQIIVNKSVPLTTQSLQQTPGGMKQAGYKDTPISYKGPTESCMERVL 180

Query: 1110 VSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDII 1167
            ++SN+E+++LIKMLLR TRRPE+GDKFSSRHGQKGV G+I  QEDMPFN+SGICPDI+
Sbjct: 181  ITSNTEESYLIKMLLRSTRRPELGDKFSSRHGQKGVCGMIANQEDMPFNDSGICPDIV 238



 Score =  129 bits (324), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 55/78 (70%), Positives = 69/78 (88%)

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
            YK+ P+SYKG   S +E+VL++SN+E+++LIKMLLR TRRPE+GDKFSSRHGQKGV G+I
Sbjct: 161  YKDTPISYKGPTESCMERVLITSNTEESYLIKMLLRSTRRPELGDKFSSRHGQKGVCGMI 220

Query: 1242 VEQEDMPFNESGICPDII 1259
              QEDMPFN+SGICPDI+
Sbjct: 221  ANQEDMPFNDSGICPDIV 238



 Score = 69.3 bits (168), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/47 (68%), Positives = 37/47 (78%)

Query: 777 KQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
           KQAMG I YNQQ RIDT+MY LVY Q P+V+SKTI +  F KLPAG+
Sbjct: 1   KQAMGSIAYNQQTRIDTIMYLLVYPQAPLVKSKTIDLIQFDKLPAGQ 47


>gi|410081580|ref|XP_003958369.1| hypothetical protein KAFR_0G02000 [Kazachstania africana CBS 2517]
 gi|372464957|emb|CCF59234.1| hypothetical protein KAFR_0G02000 [Kazachstania africana CBS 2517]
          Length = 1148

 Score =  340 bits (873), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 157/262 (59%), Positives = 204/262 (77%), Gaps = 2/262 (0%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ  RIDTL+Y ++Y Q+PMV++KTI + +
Sbjct: 688  GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMIYPQQPMVKTKTIELID 747

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+AVMSYSGYDIEDAL++NKASLDRGFGRC   R +  VLK+YPN T D 
Sbjct: 748  YDKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCETRRKTTTVLKRYPNHTQD- 806

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAIS-MATPEYK 1091
            I+G +   +  +P+++H+AL  DG+   G ++   Q+ +NKS+PT S  A +  A   Y+
Sbjct: 807  IIGGMRVDEKGEPIWQHKALGPDGLGEVGMKLDSGQIYINKSVPTNSTDAFNGAAQASYR 866

Query: 1092 EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVE 1151
            E PV Y+   PS++++V++S +  D  LIK+LLRQ RRPE+GDKFSSRHGQKGV G+IV+
Sbjct: 867  ETPVIYRAPEPSHIDQVMMSVSDNDQALIKVLLRQHRRPELGDKFSSRHGQKGVCGIIVK 926

Query: 1152 QEDMPFNESGICPDIIMNPHGL 1173
            QEDMPFN+ G+ PDIIMNPHG 
Sbjct: 927  QEDMPFNDQGVVPDIIMNPHGF 948



 Score =  278 bits (710), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 124/191 (64%), Positives = 159/191 (83%)

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
            Y+E PV Y+   PS++++V++S +  D  LIK+LLRQ RRPE+GDKFSSRHGQKGV G+I
Sbjct: 865  YRETPVIYRAPEPSHIDQVMMSVSDNDQALIKVLLRQHRRPELGDKFSSRHGQKGVCGII 924

Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
            V+QEDMPFN+ G+ PDIIMNPHG+PSRMTVGK+IEL++GKAG++ G+ + GT FGG+KL 
Sbjct: 925  VKQEDMPFNDQGVVPDIIMNPHGFPSRMTVGKMIELVSGKAGVLNGSLEYGTCFGGSKLE 984

Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
            D+ + L+  G+NY GKD+ YSGITGE L+AYI+ GP+YYQKLKHMV DK+HAR+RGPR V
Sbjct: 985  DMSKILVEKGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAV 1044

Query: 1362 LTRQPTGRRWK 1372
            LTRQPT  R +
Sbjct: 1045 LTRQPTEGRSR 1055



 Score =  189 bits (480), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 105/204 (51%), Positives = 140/204 (68%), Gaps = 9/204 (4%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPK-IKAAQFD--IV 189
           +D  DY  N  ++   Q  + ++ D   LF     D    I DK++ K  +A ++D  + 
Sbjct: 368 VDDRDYVGNKRLELAGQLISLLFED---LFKKFNSDFKASI-DKVLKKPNRAMEYDALLS 423

Query: 190 NHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
            ++  + IT+ L  AI TGNW+++RFKMER GVT VLSRLSYIS LGMMTRI+SQFEK+R
Sbjct: 424 INVHSNNITSGLNRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSR 483

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHI 309
           KVSGPR+LQ SQ+GMLC +DTPEGEACGLVKNLALMTHITT+++E+ + K+ Y +G+E I
Sbjct: 484 KVSGPRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEEEPIKKLCYVLGVEDI 543

Query: 310 AMFNGEELSSPGVYLVFVNGILAG 333
            + +   L     Y VF+NG L G
Sbjct: 544 NLIDSASLHLN--YSVFLNGTLIG 565



 Score =  160 bits (404), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 78/132 (59%), Positives = 94/132 (71%), Gaps = 15/132 (11%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKR 751
           FDDFL  G +EYLDVNE NDS IA+ E  I   VT HLEI PFT+LG  AG         
Sbjct: 639 FDDFLKLGLVEYLDVNEENDSFIALYEKDIDQAVT-HLEIEPFTVLGAVAG--------- 688

Query: 752 FHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTI 811
                L+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ  RIDTL+Y ++Y Q+PMV++KTI
Sbjct: 689 -----LIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMIYPQQPMVKTKTI 743

Query: 812 RITNFHKLPAGK 823
            + ++ KLPAG+
Sbjct: 744 ELIDYDKLPAGQ 755



 Score =  103 bits (256), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 50/115 (43%), Positives = 80/115 (69%), Gaps = 2/115 (1%)

Query: 421 TSSVTMHSQRTSPLLSCKKLRQKRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAM 480
            S   +++Q+ +      K++  R Q  K T + +  + +++T IAH+ V  + F+ KA+
Sbjct: 292 ASKFNIYTQQQALEYIGAKVKTMRRQ--KLTVLQEGIEAIATTVIAHLTVEALNFREKAL 349

Query: 481 YLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELKET 535
           Y+A+M RR+V+A+ +P M+DDRDY GNKRLELAG L+SL+FED+FK+FNS+ K +
Sbjct: 350 YMAMMTRRVVMAMHNPKMVDDRDYVGNKRLELAGQLISLLFEDLFKKFNSDFKAS 404



 Score = 87.0 bits (214), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 36/59 (61%), Positives = 50/59 (84%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           DKW L+ +FLK KGLVK H+DSF+YF+++++KK+++AN  I SDVDP FYLKY+DI +G
Sbjct: 45  DKWHLLPAFLKVKGLVKQHLDSFNYFVDIDLKKIIKANQTILSDVDPEFYLKYVDIRIG 103



 Score = 82.0 bits (201), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/51 (70%), Positives = 42/51 (82%)

Query: 356 TTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVL 406
           T PHECRLRD+TYSAPI VDIEYTRG   ++  D+ IGRMPIML+S+KC L
Sbjct: 115 TPPHECRLRDMTYSAPIYVDIEYTRGRNIIMHKDVEIGRMPIMLRSNKCTL 165


>gi|387191409|gb|AFJ68613.1| DNA-directed RNA polymerase III subunit RPC2 [Nannochloropsis
            gaditana CCMP526]
 gi|422292684|gb|EKU19986.1| DNA-directed RNA polymerase III subunit RPC2 [Nannochloropsis
            gaditana CCMP526]
          Length = 1197

 Score =  340 bits (873), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 207/490 (42%), Positives = 271/490 (55%), Gaps = 120/490 (24%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG +  NQ  R+D+L+Y +VY Q+P+V ++T+ + N
Sbjct: 708  GLIPYPHHNQSPRNTYQCAMGKQAMGTVALNQYERLDSLLYAMVYPQKPLVTTRTLDLVN 767

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F++LP GQNA +AVMSYSGYDIEDA+++NKASLDRGFGRCL+ R  +  L++Y N   D 
Sbjct: 768  FNELPGGQNAIVAVMSYSGYDIEDAVVLNKASLDRGFGRCLILRKHQTSLRKYANGAADN 827

Query: 1033 ILGPLLEADT-----------------------RKP-VYRHRALDQDGIVAPGEQICERQ 1068
            + GP  +                          R P + R  ALD+DGI   GE++    
Sbjct: 828  LRGPPEDTAAVCSGMGGEPSAAQSNLAGAYSIRRDPRLRRFEALDKDGICQVGERLGNGS 887

Query: 1069 VLVNKSMPTISVSAISMA-----TPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKML 1123
            V++NK  P ISV+ ++M      TP +K  P+SYKG  PS++++VL++SN     L+K+ 
Sbjct: 888  VMINKESP-ISVADLNMGSGADPTP-FKPTPLSYKGPAPSHVDQVLITSNEGGDLLVKVS 945

Query: 1124 LRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYK 1183
            +RQ RRPE+GDKFSSRHGQKGV G+IV QEDMPFN+ GICPD+IMNPHG     R+T  K
Sbjct: 946  VRQCRRPEVGDKFSSRHGQKGVCGIIVAQEDMPFNDDGICPDLIMNPHGFP--SRMTVGK 1003

Query: 1184 EVP-VSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
             +  V+ K SV                    M+ RQ      G+ F S        G +V
Sbjct: 1004 LIEFVAGKASV--------------------MIGRQAYGTAFGEDFGSADRVVACSGALV 1043

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
            E                 N   Y     VGK I + +G +G                   
Sbjct: 1044 E-----------------NGFSY-----VGKEI-ITSGTSG------------------- 1061

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
              E L+   Y +QG  +FY                   QKLKHMV DK+HAR+RGPR VL
Sbjct: 1062 --EPLLT--YIFQGP-VFY-------------------QKLKHMVMDKMHARARGPRAVL 1097

Query: 1363 TRQPTGRRWK 1372
            TRQPT  R +
Sbjct: 1098 TRQPTEGRSR 1107



 Score =  221 bits (562), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 108/210 (51%), Positives = 151/210 (71%), Gaps = 9/210 (4%)

Query: 130 KPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGI-ADKIIPKIKAAQ-FD 187
           +  +D  DY+ N  ++   Q  + ++ D+      K L++ +   AD+ + K    Q FD
Sbjct: 385 RSQLDDKDYYGNKRLELAGQLLSLLFEDL-----FKRLNVQLKKQADQGLSKPNRTQSFD 439

Query: 188 IVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEK 247
           ++  +R DTITN    AI TGNW ++RF+M+RQGVTQVL+RLSYIS LGMMTRINSQFEK
Sbjct: 440 VIKCIRTDTITNGFIQAIATGNWKLQRFRMDRQGVTQVLTRLSYISCLGMMTRINSQFEK 499

Query: 248 TRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIE 307
           TRKVSGPRSLQ SQWGM+CP+DTPEGEACGLVKNLAL+ H+TT+ + + + K+ +++GIE
Sbjct: 500 TRKVSGPRSLQPSQWGMICPADTPEGEACGLVKNLALLAHVTTDEESEPIRKLCFDLGIE 559

Query: 308 HIAMFNGEELSSPGVYLVFVNGILAGITCH 337
            + + +G E+++   YLVF+NG++ G  CH
Sbjct: 560 DVTLLSGAEINASSNYLVFLNGLIVG--CH 587



 Score =  135 bits (341), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 68/152 (44%), Positives = 97/152 (63%), Gaps = 16/152 (10%)

Query: 676 PRPTFLNMHQFL-GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPF 734
           PR T + M Q   G     + +  G +EY+DVNE N+  IA++++ +     TH+EI P 
Sbjct: 642 PRLTNMMMRQLSSGLLTLAELIRCGVVEYVDVNEENNCLIALAQTQLTVK-HTHMEIDPL 700

Query: 735 TLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTL 794
           T+LGV AG              L+PYPHHNQ+PRNTYQCAMGKQAMG +  NQ  R+D+L
Sbjct: 701 TVLGVVAG--------------LIPYPHHNQSPRNTYQCAMGKQAMGTVALNQYERLDSL 746

Query: 795 MYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
           +Y +VY Q+P+V ++T+ + NF++LP G+  I
Sbjct: 747 LYAMVYPQKPLVTTRTLDLVNFNELPGGQNAI 778



 Score =  102 bits (254), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 48/98 (48%), Positives = 70/98 (71%), Gaps = 2/98 (2%)

Query: 445 FQTYKK--TPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDR 502
           F  Y++  +P ++AR+ L+S  + H+PVIN  F+ K +++  +IRR++L   D   LDD+
Sbjct: 332 FAFYRRASSPEEEAREVLASVILNHVPVINFDFRTKCIFVCHVIRRVLLTHRDRSQLDDK 391

Query: 503 DYYGNKRLELAGSLLSLMFEDVFKRFNSELKETNLSGV 540
           DYYGNKRLELAG LLSL+FED+FKR N +LK+    G+
Sbjct: 392 DYYGNKRLELAGQLLSLLFEDLFKRLNVQLKKQADQGL 429



 Score = 85.1 bits (209), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 37/78 (47%), Positives = 56/78 (71%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQ 400
           V +P +++    + + TP +CRLRD TYSAPITVD+ YTRG Q VV+  ++IGR+PIML+
Sbjct: 106 VGEPSVDDDAYVSSRVTPFQCRLRDCTYSAPITVDVRYTRGRQIVVKRGVMIGRIPIMLR 165

Query: 401 SSKCVLRNKTEYTSSSRR 418
           S KC+L  ++E   + ++
Sbjct: 166 SCKCILAGRSEAELAEKK 183



 Score = 79.0 bits (193), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 57/82 (69%), Gaps = 4/82 (4%)

Query: 95  YLTMVTDETSKLKDSP--EIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANA 152
           + T + D++ +    P  ++ DKWKL+  FL+ +GL++ HIDSFD+F+N EIK ++ A +
Sbjct: 26  FFTELADQSQEDVSKPVTDVADKWKLLPHFLQLRGLMRQHIDSFDFFVNREIKDIVNAAS 85

Query: 153 N--IYSDVDPLFYLKYLDIHVG 172
           N  + S+ DP F+L+Y D+HVG
Sbjct: 86  NRELRSEADPKFWLRYTDVHVG 107


>gi|363756358|ref|XP_003648395.1| hypothetical protein Ecym_8300 [Eremothecium cymbalariae DBVPG#7215]
 gi|356891595|gb|AET41578.1| Hypothetical protein Ecym_8300 [Eremothecium cymbalariae DBVPG#7215]
          Length = 1141

 Score =  340 bits (873), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 152/262 (58%), Positives = 207/262 (79%), Gaps = 2/262 (0%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ  RIDTL+Y ++Y Q+PMV++KTI + +
Sbjct: 681  GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMIYPQQPMVKTKTIELID 740

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+AVMSYSGYDIEDAL++NK+S+DRGFGRC   + +  +LK+YPN T D 
Sbjct: 741  YDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCETRKKTTTILKRYPNHTQD- 799

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPT-ISVSAISMATPEYK 1091
            I+G +   +  +P+++H++L  DG+   G ++   Q+ +NKS+PT  S S ++ +  +Y+
Sbjct: 800  IIGGMRVDENGEPIWQHKSLGPDGLGEVGMKVESGQIYINKSVPTNASDSVLTQSQSQYR 859

Query: 1092 EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVE 1151
            E P+ Y+   PS++++V++S +  D  LIK+LLRQ RRPE+GDKFSSRHGQKGV G+IV+
Sbjct: 860  EAPIIYRAPEPSHIDQVMMSVSDNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCGIIVQ 919

Query: 1152 QEDMPFNESGICPDIIMNPHGL 1173
            QEDMPFN+ GICPDIIMNPHG 
Sbjct: 920  QEDMPFNDQGICPDIIMNPHGF 941



 Score =  286 bits (733), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 126/193 (65%), Positives = 162/193 (83%)

Query: 1180 TEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1239
            ++Y+E P+ Y+   PS++++V++S +  D  LIK+LLRQ RRPE+GDKFSSRHGQKGV G
Sbjct: 856  SQYREAPIIYRAPEPSHIDQVMMSVSDNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCG 915

Query: 1240 LIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTK 1299
            +IV+QEDMPFN+ GICPDIIMNPHG+PSRMTVGK+IEL++GKAG++ G  + GT FGG+K
Sbjct: 916  IIVQQEDMPFNDQGICPDIIMNPHGFPSRMTVGKMIELVSGKAGVLNGTLEYGTCFGGSK 975

Query: 1300 LVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPR 1359
            L D+ E LI +G+NY GKD+ YSGITGE L+AY++ GP+YYQKLKHMV DK+HAR+RGPR
Sbjct: 976  LADMSEILINNGFNYSGKDMLYSGITGECLQAYVFFGPIYYQKLKHMVLDKMHARARGPR 1035

Query: 1360 VVLTRQPTGRRWK 1372
             VLTRQPT  R +
Sbjct: 1036 AVLTRQPTEGRSR 1048



 Score =  187 bits (474), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 100/204 (49%), Positives = 139/204 (68%), Gaps = 9/204 (4%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPK-IKAAQFD--IV 189
           +D  DY  N  ++   Q  + ++ D     + K+ +      DK++ K  +A  +D  + 
Sbjct: 361 VDDRDYVGNKRLELAGQLMSLLFED----LFKKFNNDFKASIDKVLKKPNRAEMYDALLS 416

Query: 190 NHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
            ++  + IT+ L  AI TGNW+++RFKMER GVT VLSRLSYIS LGMMTRI+SQFEK+R
Sbjct: 417 INVHSNNITSGLNRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSR 476

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHI 309
           KVSGPR+LQ SQ+GMLC SDTPEGEACGLVKNLALMTHITT+++E+ + ++ Y +G+E I
Sbjct: 477 KVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTDDEEEPIKRLCYLLGVEDI 536

Query: 310 AMFNGEELSSPGVYLVFVNGILAG 333
            + +   L     Y V++NG + G
Sbjct: 537 GLIDSASLHDN--YGVYLNGTIIG 558



 Score =  162 bits (411), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 79/136 (58%), Positives = 97/136 (71%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G  +FDDFL  G +EYLDVNE NDS IA+ E  I  G+T HLEI PFT+LG  AG     
Sbjct: 628 GKLQFDDFLKLGLVEYLDVNEENDSFIALYEKDIHEGIT-HLEIEPFTVLGAVAG----- 681

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ  RIDTL+Y ++Y Q+PMV+
Sbjct: 682 ---------LIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMIYPQQPMVK 732

Query: 808 SKTIRITNFHKLPAGK 823
           +KTI + ++ KLPAG+
Sbjct: 733 TKTIELIDYDKLPAGQ 748



 Score = 98.6 bits (244), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 48/115 (41%), Positives = 80/115 (69%), Gaps = 2/115 (1%)

Query: 421 TSSVTMHSQRTSPLLSCKKLRQKRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAM 480
            S + +++Q+ +      K++  R Q  K T + +  + +++T IAH+ V  + F+ KA+
Sbjct: 285 ASKMNIYTQQQALEYIGTKVKTIRRQ--KLTILQEGIEAIATTVIAHLTVEALDFREKAL 342

Query: 481 YLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELKET 535
           Y+A+M RR+V+A+ +  M+DDRDY GNKRLELAG L+SL+FED+FK+FN++ K +
Sbjct: 343 YIAIMTRRVVMAIQNCKMVDDRDYVGNKRLELAGQLMSLLFEDLFKKFNNDFKAS 397



 Score = 87.0 bits (214), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 37/59 (62%), Positives = 50/59 (84%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           DKW L+ +FLK KGLVK H+DSF+YF++V++KK+++AN  + SDVDP FYLKY+DI VG
Sbjct: 39  DKWNLLPAFLKVKGLVKQHLDSFNYFVDVDLKKIIKANEMVLSDVDPEFYLKYVDIRVG 97



 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/56 (66%), Positives = 45/56 (80%)

Query: 358 PHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKTEYT 413
           PHECRLRD+TYSAPI VDIEYTRG   V+  D+ IG+MPIML+S+KC+L   +E T
Sbjct: 110 PHECRLRDMTYSAPIYVDIEYTRGRLIVLHKDVEIGKMPIMLRSNKCILNGASEET 165


>gi|367009214|ref|XP_003679108.1| hypothetical protein TDEL_0A05650 [Torulaspora delbrueckii]
 gi|359746765|emb|CCE89897.1| hypothetical protein TDEL_0A05650 [Torulaspora delbrueckii]
          Length = 1142

 Score =  340 bits (872), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 156/262 (59%), Positives = 204/262 (77%), Gaps = 2/262 (0%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ  RIDTL+Y ++Y Q+PMV++KTI + +
Sbjct: 682  GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMIYPQQPMVKTKTIELID 741

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+AVMSYSGYDIEDAL++NK+S+DRGFGRC   R +  VLK+YPN T D 
Sbjct: 742  YDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCETRRKNTTVLKRYPNHTQD- 800

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT-PEYK 1091
            I+G +   +  +P+++H+ L  DG+   G ++   Q+ +NKS+PT S   +   T  +YK
Sbjct: 801  IIGGMRVDENGEPIWQHKCLGPDGLGEVGMKLDSGQIYINKSIPTNSGDGVLTNTQSQYK 860

Query: 1092 EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVE 1151
            E PV Y+   PS++++V++S +  D  LIK+LLRQ RRPE+GDKFSSRHGQKGV G+IV+
Sbjct: 861  ETPVIYRAPEPSHIDQVMMSVSDNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCGIIVK 920

Query: 1152 QEDMPFNESGICPDIIMNPHGL 1173
            QEDMPFN+ GICPDIIMNPHG 
Sbjct: 921  QEDMPFNDQGICPDIIMNPHGF 942



 Score =  285 bits (728), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 127/193 (65%), Positives = 162/193 (83%)

Query: 1180 TEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1239
            ++YKE PV Y+   PS++++V++S +  D  LIK+LLRQ RRPE+GDKFSSRHGQKGV G
Sbjct: 857  SQYKETPVIYRAPEPSHIDQVMMSVSDNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCG 916

Query: 1240 LIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTK 1299
            +IV+QEDMPFN+ GICPDIIMNPHG+PSRMTVGK+IEL++GKAG++ G  + GT FGG+K
Sbjct: 917  IIVKQEDMPFNDQGICPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGTLEYGTCFGGSK 976

Query: 1300 LVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPR 1359
            L D+ + L+ +G+NY GKD+ YSGITGE L+AYI+ GP+YYQKLKHMV DK+HAR+RGPR
Sbjct: 977  LEDMTKILVDNGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPR 1036

Query: 1360 VVLTRQPTGRRWK 1372
             VLTRQPT  R +
Sbjct: 1037 AVLTRQPTEGRSR 1049



 Score =  188 bits (477), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 105/206 (50%), Positives = 141/206 (68%), Gaps = 9/206 (4%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPK-IKAAQFD--IV 189
           +D  DY  N  ++   Q  + ++ D   LF     D    I DK++ K  +A ++D  + 
Sbjct: 362 VDDRDYVGNKRLELAGQLISLLFED---LFKKFNSDFKASI-DKVLKKPNRAMEYDALLS 417

Query: 190 NHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
            ++  + IT+ L  AI TGNW+++RFKMER GVT VLSRLSYIS LGMMTRI+SQFEK+R
Sbjct: 418 INVHSNNITSGLNRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSR 477

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHI 309
           KVSGPR+LQ SQ+GMLC +DTPEGEACGLVKNLALMTHITT+++E+ + K+ Y +G+E I
Sbjct: 478 KVSGPRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEEEPIKKLCYLLGVEDI 537

Query: 310 AMFNGEELSSPGVYLVFVNGILAGIT 335
           ++ +   L     Y V +NG L G T
Sbjct: 538 SLLDSASLHLN--YGVHLNGTLIGTT 561



 Score =  158 bits (400), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 76/132 (57%), Positives = 94/132 (71%), Gaps = 15/132 (11%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKR 751
           FDDFL  G +EYLDVNE NDS IA+ E  I   +T H+EI PFT+LG  AG         
Sbjct: 633 FDDFLKLGLVEYLDVNEENDSFIALYEKDIDQNIT-HMEIEPFTVLGAVAG--------- 682

Query: 752 FHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTI 811
                L+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ  RIDTL+Y ++Y Q+PMV++KTI
Sbjct: 683 -----LIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMIYPQQPMVKTKTI 737

Query: 812 RITNFHKLPAGK 823
            + ++ KLPAG+
Sbjct: 738 ELIDYDKLPAGQ 749



 Score =  101 bits (252), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 48/115 (41%), Positives = 81/115 (70%), Gaps = 2/115 (1%)

Query: 421 TSSVTMHSQRTSPLLSCKKLRQKRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAM 480
            + + +++Q+ +      K++  R Q  K + + +  + +++T IAH+ V  + F+ KA+
Sbjct: 286 AAKLNLYTQQQALEYIGSKVKTVRRQ--KLSVLQEGIEAIATTVIAHLTVEALDFREKAL 343

Query: 481 YLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELKET 535
           Y+A+M RR+V+A+ +P M+DDRDY GNKRLELAG L+SL+FED+FK+FNS+ K +
Sbjct: 344 YIAIMTRRVVMAIYNPKMVDDRDYVGNKRLELAGQLISLLFEDLFKKFNSDFKAS 398



 Score = 86.7 bits (213), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 41/74 (55%), Positives = 56/74 (75%), Gaps = 6/74 (8%)

Query: 99  VTDETSKLKDSPEIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDV 158
           +TDE S  +D      KW L+ +FLK KGLVK H+DSF+YF++V+++K+++AN  I SDV
Sbjct: 31  LTDEISTAED------KWNLLPAFLKVKGLVKQHLDSFNYFVDVDLRKIIKANQLILSDV 84

Query: 159 DPLFYLKYLDIHVG 172
           DP FYLKY+DI VG
Sbjct: 85  DPEFYLKYVDIRVG 98



 Score = 83.6 bits (205), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 36/56 (64%), Positives = 44/56 (78%)

Query: 356 TTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKTE 411
           T PHECRLRD+TYSAPI VDIEYTRG   ++  D+ IGRMP+ML+S+KC+L    E
Sbjct: 109 TPPHECRLRDMTYSAPIYVDIEYTRGRNIIMHKDVEIGRMPVMLRSNKCILHESDE 164


>gi|353234760|emb|CCA66782.1| probable DNA-directed RNA polymerase III, 130 KD subunit
            [Piriformospora indica DSM 11827]
          Length = 1118

 Score =  340 bits (872), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 153/264 (57%), Positives = 201/264 (76%), Gaps = 3/264 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ NRIDTL+Y LVY Q+PMV++KTI +  
Sbjct: 682  GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLNRIDTLLYLLVYPQQPMVKTKTIELVG 741

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+A+MSYSGYDIEDALI+N+AS++RG+GRC V+R +  ++++YPN T+DR
Sbjct: 742  YDKLPAGQNATVAIMSYSGYDIEDALILNRASIERGYGRCQVFRKNTAIIRKYPNGTYDR 801

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPE 1089
            ++ P       K   R+  LD DG+  PGE++    V VNK  P  +V+    ++ A  E
Sbjct: 802  LVAPSKVGTEEKLPKRYEILDDDGLARPGERVDPDDVYVNKQSPKDTVTNSLTVNPAQVE 861

Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
            Y+  P++YK  V  Y+++V+++    D  L+K+L+RQTR PE+GDKFSSRHGQKGV+GLI
Sbjct: 862  YRPTPLTYKTKVAGYIDRVMITDTDNDQALVKVLIRQTRIPELGDKFSSRHGQKGVVGLI 921

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
            V QEDMPFN+ GICPD IMNPHG 
Sbjct: 922  VPQEDMPFNDQGICPDSIMNPHGF 945



 Score =  223 bits (567), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 106/191 (55%), Positives = 134/191 (70%), Gaps = 25/191 (13%)

Query: 1180 TEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1239
             EY+  P++YK  V  Y+++V+++    D  L+K+L+RQTR PE+GDKFSSRHGQKGV+G
Sbjct: 860  VEYRPTPLTYKTKVAGYIDRVMITDTDNDQALVKVLIRQTRIPELGDKFSSRHGQKGVVG 919

Query: 1240 LIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTK 1299
            LIV QEDMPFN+ GICPD IMNPHG+PSRMTVGK+IELLAGKAG++ G  + GTAFGG+K
Sbjct: 920  LIVPQEDMPFNDQGICPDSIMNPHGFPSRMTVGKMIELLAGKAGVLRGTLEYGTAFGGSK 979

Query: 1300 LVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPR 1359
            + D+ + LI HG++Y GKD+  SGITGE LEA                         GPR
Sbjct: 980  VEDMSKILIEHGFSYSGKDMLTSGITGEPLEA-------------------------GPR 1014

Query: 1360 VVLTRQPTGRR 1370
             +LTRQPT  R
Sbjct: 1015 AILTRQPTEGR 1025



 Score =  204 bits (520), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 107/206 (51%), Positives = 140/206 (67%), Gaps = 7/206 (3%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPK-IKAAQFDIVNH 191
           +D  DY  N  ++   Q  A ++ D     +  Y+       DK++ K  + + FD    
Sbjct: 360 VDDRDYVGNKRLELAGQLLALLFED----LFKAYVSELKKAFDKVLGKPARTSAFDPHTT 415

Query: 192 M--RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
           M    + IT     AI TGNW+++RF+MER GVT VLSRLSYIS LGMMTRI+SQFEKTR
Sbjct: 416 MLLHGNPITQGFIRAISTGNWSLKRFRMERAGVTHVLSRLSYISALGMMTRISSQFEKTR 475

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHI 309
           KVSGPR+LQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT+ +EK ++KI+  +G+E I
Sbjct: 476 KVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDVEEKPLVKIITLLGVEDI 535

Query: 310 AMFNGEELSSPGVYLVFVNGILAGIT 335
            +  G E+  P  ++V +NG++ G+T
Sbjct: 536 QLSTGSEIYGPTSFVVHLNGLIIGLT 561



 Score =  173 bits (438), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 86/150 (57%), Positives = 106/150 (70%), Gaps = 16/150 (10%)

Query: 675 QPRPTFLNMHQF-LGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAP 733
           QP+ T  ++    LG   F+DFL++G +EY+DVNE NDSHIA+ E  I P  TTHLEI P
Sbjct: 615 QPKVTNEHIQMLKLGKLAFEDFLHQGLVEYVDVNEENDSHIALYEKDIEPS-TTHLEIEP 673

Query: 734 FTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDT 793
           FT+LG  AG              L+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ NRIDT
Sbjct: 674 FTILGAVAG--------------LIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLNRIDT 719

Query: 794 LMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
           L+Y LVY Q+PMV++KTI +  + KLPAG+
Sbjct: 720 LLYLLVYPQQPMVKTKTIELVGYDKLPAGQ 749



 Score = 97.4 bits (241), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 55/153 (35%), Positives = 86/153 (56%), Gaps = 7/153 (4%)

Query: 390 LVIGRMPIMLQSSKCVLRNKTEYTSSSRRASTSSVTMHS-------QRTSPLLSCKKLRQ 442
           +VI    + +QS K +L      T S + A + ++   S       Q+    L  +    
Sbjct: 244 IVIALKALGVQSDKEILLLCAGNTESYQEAFSPNLEESSRAGVYTIQQAREWLGARVRSM 303

Query: 443 KRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDR 502
           +R    ++   ++  + L    + H+PV+NM    KA+Y+A M RR+++A  DP ++DDR
Sbjct: 304 RRMVGPRRPNWEEGLECLVMIVLTHVPVVNMDLSAKAIYVATMTRRVLMAHEDPKLVDDR 363

Query: 503 DYYGNKRLELAGSLLSLMFEDVFKRFNSELKET 535
           DY GNKRLELAG LL+L+FED+FK + SELK+ 
Sbjct: 364 DYVGNKRLELAGQLLALLFEDLFKAYVSELKKA 396



 Score = 84.0 bits (206), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 39/66 (59%), Positives = 49/66 (74%), Gaps = 1/66 (1%)

Query: 347 EESFNYTRQ-TTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCV 405
           +  F   RQ  TPH+CRLRD TYSAP+ VDIEY R ++R+ R D+VIGR+PIML+S+KCV
Sbjct: 93  QADFANQRQPITPHQCRLRDATYSAPLMVDIEYIRDNKRIQRKDVVIGRIPIMLRSNKCV 152

Query: 406 LRNKTE 411
           L    E
Sbjct: 153 LAGANE 158



 Score = 77.8 bits (190), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 32/61 (52%), Positives = 46/61 (75%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           + DKW L+ +FLK KGLVK HIDSF+YF++ +++ +M+AN  + SDVDP F+  + DI V
Sbjct: 27  VEDKWLLLPAFLKVKGLVKQHIDSFNYFVDYDLRAIMEANCKVTSDVDPRFHFLFTDIRV 86

Query: 172 G 172
           G
Sbjct: 87  G 87


>gi|50310217|ref|XP_455128.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49644264|emb|CAG97835.1| KLLA0F01078p [Kluyveromyces lactis]
          Length = 1142

 Score =  340 bits (871), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 156/262 (59%), Positives = 205/262 (78%), Gaps = 2/262 (0%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ  RIDTL+Y ++Y Q+PMV++KTI + +
Sbjct: 682  GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMIYPQQPMVKTKTIELID 741

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+AVMSYSGYDIEDAL++NKAS+DRGFGRC   R +  VLK+YPN T D 
Sbjct: 742  YDKLPAGQNATVAVMSYSGYDIEDALVLNKASIDRGFGRCETRRKNTTVLKRYPNHTQD- 800

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPT-ISVSAISMATPEYK 1091
            I+G +   +  +P+++H+AL  DG+   G ++   Q+ VNKS+PT  S S ++    +YK
Sbjct: 801  IIGGMRVDENGEPIWQHQALGPDGLGEVGMKVESGQIYVNKSVPTNASDSILTQTQAQYK 860

Query: 1092 EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVE 1151
            E PV Y+   PS++++V++S +  D  LIK+LLRQ RRPE+GDKFSSRHGQKGV G+IV+
Sbjct: 861  ETPVVYRAPEPSHIDQVMMSVSDNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCGIIVK 920

Query: 1152 QEDMPFNESGICPDIIMNPHGL 1173
            QED+PFN+ G+ PDIIMNPHG 
Sbjct: 921  QEDLPFNDQGVVPDIIMNPHGF 942



 Score =  279 bits (714), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 124/193 (64%), Positives = 160/193 (82%)

Query: 1180 TEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1239
             +YKE PV Y+   PS++++V++S +  D  LIK+LLRQ RRPE+GDKFSSRHGQKGV G
Sbjct: 857  AQYKETPVVYRAPEPSHIDQVMMSVSDNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCG 916

Query: 1240 LIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTK 1299
            +IV+QED+PFN+ G+ PDIIMNPHG+PSRMTVGK+IEL++GKAG++ G  + GT FGG+K
Sbjct: 917  IIVKQEDLPFNDQGVVPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGTLEYGTCFGGSK 976

Query: 1300 LVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPR 1359
            L D+ + L+ +G+NY GKD+ YSGITGE L+AYI+ GP+YYQKLKHMV DK+HAR+RGPR
Sbjct: 977  LEDMSKILVDNGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPR 1036

Query: 1360 VVLTRQPTGRRWK 1372
             VLTRQPT  R +
Sbjct: 1037 AVLTRQPTEGRSR 1049



 Score =  187 bits (475), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 100/206 (48%), Positives = 141/206 (68%), Gaps = 9/206 (4%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPK-IKAAQFD--IV 189
           +D  DY  N  ++   Q  + ++ D+    + K+ +      DK++ K  +A  +D  + 
Sbjct: 362 VDDRDYVGNKRLELAGQLMSLLFEDL----FKKFNNDFKANIDKVLKKPNRAEMYDALLT 417

Query: 190 NHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
            ++  + IT  +  AI TGNW+++RFKMER GVT VLSRLSYIS LGMMTRI+SQFEK+R
Sbjct: 418 INVHSNNITTGMNRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSR 477

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHI 309
           KVSGPR+LQ SQ+GMLC SDTPEGEACGLVKNLALMTHITT+++E+ + +I Y +G+E I
Sbjct: 478 KVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTDDEEEPIKRICYLLGVEDI 537

Query: 310 AMFNGEELSSPGVYLVFVNGILAGIT 335
           ++ +   +     Y V++NG + G T
Sbjct: 538 SLIDSASIHLN--YGVYLNGTIIGTT 561



 Score =  155 bits (393), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 76/136 (55%), Positives = 95/136 (69%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G  +FDDFL  G +EYLDVNE NDS IA+ E  +   +T HLEI  FT+LG  AG     
Sbjct: 629 GKLQFDDFLKLGLVEYLDVNEENDSFIALYEKDLSENIT-HLEIESFTVLGAVAG----- 682

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ  RIDTL+Y ++Y Q+PMV+
Sbjct: 683 ---------LIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMIYPQQPMVK 733

Query: 808 SKTIRITNFHKLPAGK 823
           +KTI + ++ KLPAG+
Sbjct: 734 TKTIELIDYDKLPAGQ 749



 Score =  100 bits (248), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 47/113 (41%), Positives = 80/113 (70%), Gaps = 2/113 (1%)

Query: 421 TSSVTMHSQRTSPLLSCKKLRQKRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAM 480
            + + +++Q+ +      K++  R Q  K + + +  + +++T IAH+ V  + F+ KA+
Sbjct: 286 AAELKIYTQQQALEFIGTKVKTVRRQ--KLSILQEGIEAIATTVIAHLTVEALDFREKAL 343

Query: 481 YLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
           Y+A+M RR+V+A+ +P M+DDRDY GNKRLELAG L+SL+FED+FK+FN++ K
Sbjct: 344 YIAMMTRRVVMAIDNPKMVDDRDYVGNKRLELAGQLMSLLFEDLFKKFNNDFK 396



 Score = 87.8 bits (216), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 38/59 (64%), Positives = 50/59 (84%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           DKW L+ +FLK KGLVK H+DSF+YF++V++KK+++AN  I SDVDP FYLKY+DI VG
Sbjct: 40  DKWNLLPAFLKVKGLVKQHLDSFNYFVDVDLKKIIKANEVILSDVDPEFYLKYIDIRVG 98



 Score = 82.8 bits (203), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/61 (62%), Positives = 44/61 (72%)

Query: 351 NYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
           N    T PHECRLRD+TYS PI VDIEYTRG   V+  D+ IGRMPIML+S+KC+L    
Sbjct: 104 NKAIMTPPHECRLRDMTYSTPIFVDIEYTRGRSIVLHRDVEIGRMPIMLRSNKCILDGAA 163

Query: 411 E 411
           E
Sbjct: 164 E 164


>gi|241958746|ref|XP_002422092.1| DNA-directed RNA polymerase III subunit, putative [Candida
            dubliniensis CD36]
 gi|223645437|emb|CAX40093.1| DNA-directed RNA polymerase III subunit, putative [Candida
            dubliniensis CD36]
          Length = 1157

 Score =  339 bits (870), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 163/267 (61%), Positives = 201/267 (75%), Gaps = 7/267 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ  RIDTL+Y +VY Q+PMV++KTI +  
Sbjct: 694  GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFRRIDTLLYFMVYPQQPMVKTKTIELIE 753

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+AVMSYSGYDIEDAL++NKASLDRGFGRC V R +   LK+YPN T D 
Sbjct: 754  YDKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCQVVRKNTVQLKKYPNHTQD- 812

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPE--- 1089
            IL  +   +  KP++ H+AL  DG+   G +I   QV  NK +PT S  +   A  E   
Sbjct: 813  ILAGMRVDENNKPIFPHQALGPDGLGEVGSRIFNGQVFANKCVPTNSGDSTLGAQQEQRT 872

Query: 1090 ---YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVI 1146
               ++E P  YKG  PSY+++V++S +  D  LIK+LLRQTRRPE+GDKFSSRHGQKGV 
Sbjct: 873  AESHREAPAFYKGPEPSYIDQVMMSVSDNDQALIKVLLRQTRRPELGDKFSSRHGQKGVC 932

Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G+IV+QED+PFN+SGI PDIIMNPHG 
Sbjct: 933  GIIVQQEDLPFNDSGISPDIIMNPHGF 959



 Score =  280 bits (717), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 126/191 (65%), Positives = 161/191 (84%)

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
            ++E P  YKG  PSY+++V++S +  D  LIK+LLRQTRRPE+GDKFSSRHGQKGV G+I
Sbjct: 876  HREAPAFYKGPEPSYIDQVMMSVSDNDQALIKVLLRQTRRPELGDKFSSRHGQKGVCGII 935

Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
            V+QED+PFN+SGI PDIIMNPHG+PSRMTVGK+IEL++GKAG++ G+ + GT FGG+KL 
Sbjct: 936  VQQEDLPFNDSGISPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGSLEYGTCFGGSKLE 995

Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
            D+ + L+  G++Y GKD+ YSGITGE L+AYI+ GP+YYQKLKHMV DK+HAR+RGPR V
Sbjct: 996  DMSKILVEKGFSYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAV 1055

Query: 1362 LTRQPTGRRWK 1372
            LTRQPT  R +
Sbjct: 1056 LTRQPTEGRSR 1066



 Score =  187 bits (474), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 104/206 (50%), Positives = 137/206 (66%), Gaps = 7/206 (3%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPK-IKAAQFD--IV 189
           +D  DY  N  ++   Q  + ++ D   LF     D    I DK++ K  + ++FD  + 
Sbjct: 368 VDDRDYVGNKRLELAGQLMSLLFED---LFKKFNSDFKANI-DKVLKKPSRTSEFDALLS 423

Query: 190 NHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
            ++  + IT  L  AI TGNW+++RFKMER GVT VLSRLSYIS LGMMTRI+SQFEK+R
Sbjct: 424 INIHSNNITMGLNRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSR 483

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHI 309
           KVSGPR+LQ SQ+GMLC +DTPEGEACGLVKNLALMTHITT+++E  + K+   +G E I
Sbjct: 484 KVSGPRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEEAPVKKLCIVLGCEPI 543

Query: 310 AMFNGEELSSPGVYLVFVNGILAGIT 335
              +   L   G + V++NG L G T
Sbjct: 544 FALDSATLHVEGNFGVYLNGTLIGTT 569



 Score =  160 bits (406), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 81/135 (60%), Positives = 95/135 (70%), Gaps = 17/135 (12%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGI--RPG-VTTHLEIAPFTLLGVCAGIELLQY 748
           FDDFL  G +EYLDVNE NDS IA+ E  I   PG V THLEI PFT+LG  AG      
Sbjct: 641 FDDFLKHGLVEYLDVNEENDSLIALYEDDITANPGAVVTHLEIEPFTVLGAVAG------ 694

Query: 749 NKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVES 808
                   L+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ  RIDTL+Y +VY Q+PMV++
Sbjct: 695 --------LIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFRRIDTLLYFMVYPQQPMVKT 746

Query: 809 KTIRITNFHKLPAGK 823
           KTI +  + KLPAG+
Sbjct: 747 KTIELIEYDKLPAGQ 761



 Score =  103 bits (258), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 46/91 (50%), Positives = 70/91 (76%)

Query: 443 KRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDR 502
           +R    K + + +  + +++T IAH+ V +++FK KA+Y+A M RR+V+A+ +P M+DDR
Sbjct: 312 RRAGAPKLSQLQEGIEAIATTIIAHLTVSDLQFKEKALYIATMARRVVMAMHNPKMVDDR 371

Query: 503 DYYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
           DY GNKRLELAG L+SL+FED+FK+FNS+ K
Sbjct: 372 DYVGNKRLELAGQLMSLLFEDLFKKFNSDFK 402



 Score = 88.2 bits (217), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 43/80 (53%), Positives = 54/80 (67%), Gaps = 5/80 (6%)

Query: 334 ITCHHKEVCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIG 393
           I   HK   KP ++E         PHECRLRDLTYSAPI VD+EYTRG + +  +DL IG
Sbjct: 95  IRVGHKSTSKPGVKEVI-----LPPHECRLRDLTYSAPIYVDVEYTRGRKIIRHNDLEIG 149

Query: 394 RMPIMLQSSKCVLRNKTEYT 413
           RMP+ML+S+KC+L   +E T
Sbjct: 150 RMPVMLRSNKCMLEGMSEAT 169



 Score = 87.0 bits (214), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 42/84 (50%), Positives = 59/84 (70%), Gaps = 6/84 (7%)

Query: 99  VTDETSKLKDSPEIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDV 158
           +TDE +  KD      KW L+ +FLK KGLVK H+DS++YF++V++KK+++AN  + SDV
Sbjct: 31  LTDEINTAKD------KWNLLPAFLKVKGLVKQHLDSYNYFVDVDLKKIIKANELVLSDV 84

Query: 159 DPLFYLKYLDIHVGIADKIIPKIK 182
           DP FY+KYLDI VG      P +K
Sbjct: 85  DPEFYVKYLDIRVGHKSTSKPGVK 108


>gi|340376544|ref|XP_003386792.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Amphimedon
            queenslandica]
          Length = 1131

 Score =  339 bits (869), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 160/269 (59%), Positives = 198/269 (73%), Gaps = 8/269 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I YNQQNRIDTL+  ++Y Q P+V+++TI +  
Sbjct: 665  GLIPYPHHNQSPRNTYQCAMGKQAIGTIAYNQQNRIDTLLNIMIYPQAPIVKTRTIDLIK 724

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAG NA +A+M YSGYDIEDALI+N+ASLDRG  R LV R   C LK+Y N T D+
Sbjct: 725  FDKLPAGFNAVVAIMCYSGYDIEDALILNRASLDRGLARSLVCRKQTCSLKRYSNMTFDK 784

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS--------AIS 1084
            ILGP  E DT KP+++H  LD+DGIV   E++   QVL+NK +P ++ S        A  
Sbjct: 785  ILGPSREMDTGKPIWKHTPLDEDGIVGVAERVSSGQVLINKLVPQVTQSLCPGGGGAAAG 844

Query: 1085 MATPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKG 1144
             A   YK  PVSY+G    Y   VL+++N+E+++LIK+LL   R PEIGDKFSSRHGQKG
Sbjct: 845  GADNNYKSCPVSYRGPTDVYANNVLITNNNEESYLIKILLESIRIPEIGDKFSSRHGQKG 904

Query: 1145 VIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            V GLIV QEDMPF + G+CPDIIMNPHG 
Sbjct: 905  VCGLIVPQEDMPFTDQGLCPDIIMNPHGF 933



 Score =  278 bits (712), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 128/191 (67%), Positives = 154/191 (80%)

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
            YK  PVSY+G    Y   VL+++N+E+++LIK+LL   R PEIGDKFSSRHGQKGV GLI
Sbjct: 850  YKSCPVSYRGPTDVYANNVLITNNNEESYLIKILLESIRIPEIGDKFSSRHGQKGVCGLI 909

Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
            V QEDMPF + G+CPDIIMNPHG+PSRMTVGKLIE++AGK G + G Y+  TAFGG K+ 
Sbjct: 910  VPQEDMPFTDQGLCPDIIMNPHGFPSRMTVGKLIEVIAGKTGALNGTYRYSTAFGGDKVS 969

Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
            D+  +LI +G+NY GKDI  SGITGE LEAYIY+G VYYQ+LKHMV DK+HARSRGPRV+
Sbjct: 970  DISSDLISNGFNYVGKDILTSGITGEPLEAYIYTGIVYYQRLKHMVLDKMHARSRGPRVI 1029

Query: 1362 LTRQPTGRRWK 1372
            LTRQPT  R +
Sbjct: 1030 LTRQPTEGRSR 1040



 Score =  218 bits (554), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 111/206 (53%), Positives = 143/206 (69%), Gaps = 4/206 (1%)

Query: 130 KPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIV 189
           K  +D  DY+ N   K+L  A   +    + LF  +Y      I D+ + K +   FD+V
Sbjct: 344 KDEVDDRDYYGN---KRLELAGPLLSLLFEDLFK-RYNSELKKIIDRTLAKKRTQPFDVV 399

Query: 190 NHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
            HM+   IT  +  A+ TGNWT+RRFKMER GVTQVLSR+S+I+ LG MTRI SQFEKTR
Sbjct: 400 CHMKNSIITQGIETALSTGNWTLRRFKMERGGVTQVLSRMSFIACLGHMTRITSQFEKTR 459

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHI 309
           K+SGPRSLQ SQWGM+CPSDTPEGEACGLVKNLAL++HITT+ DE  + ++ +N+G+E I
Sbjct: 460 KISGPRSLQPSQWGMVCPSDTPEGEACGLVKNLALISHITTDVDEGPIRRLAFNLGVEDI 519

Query: 310 AMFNGEELSSPGVYLVFVNGILAGIT 335
              +GEELSS   YLV +NG + G+ 
Sbjct: 520 RYLSGEELSSNESYLVLLNGNIVGVV 545



 Score =  166 bits (419), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 84/147 (57%), Positives = 101/147 (68%), Gaps = 15/147 (10%)

Query: 676 PRPTFLNMHQFLGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFT 735
           PR T  ++        F+DFL +G IEYLDVNE NDS IA+ ES I    TTHLEI PFT
Sbjct: 600 PRVTSHHIDLISKGMEFEDFLAKGLIEYLDVNEENDSMIALYESDINSS-TTHLEIEPFT 658

Query: 736 LLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLM 795
           +LGVCAG              L+PYPHHNQ+PRNTYQCAMGKQA+G I YNQQNRIDTL+
Sbjct: 659 ILGVCAG--------------LIPYPHHNQSPRNTYQCAMGKQAIGTIAYNQQNRIDTLL 704

Query: 796 YNLVYAQRPMVESKTIRITNFHKLPAG 822
             ++Y Q P+V+++TI +  F KLPAG
Sbjct: 705 NIMIYPQAPIVKTRTIDLIKFDKLPAG 731



 Score =  107 bits (267), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 53/93 (56%), Positives = 72/93 (77%), Gaps = 1/93 (1%)

Query: 442 QKRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDD 501
           +KR     ++  ++A D LS   +AHIPV +  FK+KA +L++MIRR++LA +  D +DD
Sbjct: 291 RKRMYGKPRSKAEEAHDVLSHYVLAHIPVESNDFKIKASFLSLMIRRVILATAK-DEVDD 349

Query: 502 RDYYGNKRLELAGSLLSLMFEDVFKRFNSELKE 534
           RDYYGNKRLELAG LLSL+FED+FKR+NSELK+
Sbjct: 350 RDYYGNKRLELAGPLLSLLFEDLFKRYNSELKK 382



 Score = 99.0 bits (245), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 45/71 (63%), Positives = 54/71 (76%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQ 400
           V  P +EES N   Q TP ECRLRD+TYSAP+TVDIEYTRG+QRV R    IG++PIML+
Sbjct: 81  VGTPLVEESLNVCTQITPQECRLRDMTYSAPVTVDIEYTRGTQRVRRKGFSIGQLPIMLR 140

Query: 401 SSKCVLRNKTE 411
           S+ CVL NK +
Sbjct: 141 SANCVLSNKNQ 151



 Score = 88.6 bits (218), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 39/61 (63%), Positives = 51/61 (83%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           I DKWKL+ +FLK KGLVK H+DSF+YF++ +IKK+++AN  + SD DP FYLKYLDI+V
Sbjct: 22  IEDKWKLLPAFLKVKGLVKQHLDSFNYFVSTDIKKIVRANDLVISDFDPSFYLKYLDIYV 81

Query: 172 G 172
           G
Sbjct: 82  G 82


>gi|354546082|emb|CCE42811.1| hypothetical protein CPAR2_204540 [Candida parapsilosis]
          Length = 1149

 Score =  339 bits (869), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 162/265 (61%), Positives = 204/265 (76%), Gaps = 6/265 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ  RIDTL+Y +VY Q+PMV++KTI + N
Sbjct: 689  GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFRRIDTLLYFMVYPQQPMVKTKTIELIN 748

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+AVMSYSGYDIEDAL++NK+SLDRGFGRC V R +   LK+YPN T D 
Sbjct: 749  YDKLPAGQNATVAVMSYSGYDIEDALVLNKSSLDRGFGRCQVVRKNTVQLKKYPNHTKD- 807

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPE--- 1089
            IL  +   +  +P++ HRAL  DG+   G +I   QV  NK +PT S  + S+  P+   
Sbjct: 808  ILSGMRVDENDEPIFPHRALGPDGLGEVGSRIENGQVYANKCVPTNSGDS-SLGQPQQVE 866

Query: 1090 -YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
             ++E P+ YKG  PSY+++V++S +  D  LIK+LLRQTRRPE+GDKFSSRHGQKGV G+
Sbjct: 867  NHREAPLFYKGPEPSYVDQVMMSVSDNDQALIKVLLRQTRRPELGDKFSSRHGQKGVCGI 926

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            IV+QED+PFN+ GI PDIIMNPHG 
Sbjct: 927  IVQQEDLPFNDDGISPDIIMNPHGF 951



 Score =  278 bits (712), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 124/195 (63%), Positives = 163/195 (83%)

Query: 1178 RITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV 1237
            ++  ++E P+ YKG  PSY+++V++S +  D  LIK+LLRQTRRPE+GDKFSSRHGQKGV
Sbjct: 864  QVENHREAPLFYKGPEPSYVDQVMMSVSDNDQALIKVLLRQTRRPELGDKFSSRHGQKGV 923

Query: 1238 IGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGG 1297
             G+IV+QED+PFN+ GI PDIIMNPHG+PSRMTVGK+IEL++GKAG++ G+ + GT FGG
Sbjct: 924  CGIIVQQEDLPFNDDGISPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGSLEYGTCFGG 983

Query: 1298 TKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRG 1357
            +KL ++ + L+  G++Y GKD+ YSGITGE L+AYI+ GP+YYQKLKHMV DK+HAR+RG
Sbjct: 984  SKLEEMSKILVEKGFSYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARG 1043

Query: 1358 PRVVLTRQPTGRRWK 1372
            PR VLTRQPT  R +
Sbjct: 1044 PRAVLTRQPTEGRSR 1058



 Score =  188 bits (477), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 104/206 (50%), Positives = 137/206 (66%), Gaps = 7/206 (3%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPK-IKAAQFD--IV 189
           +D  DY  N  ++   Q  + ++ D   LF     D    I DKI+ K  + ++FD  + 
Sbjct: 363 VDDRDYVGNKRLELAGQLMSLLFED---LFKKFNSDFKANI-DKILKKPSRTSEFDALLS 418

Query: 190 NHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
            ++  + IT  L  AI TGNW+++RFKMER GVT VLSRLSYIS LGMMTRI+SQFEK+R
Sbjct: 419 INIHSNNITMGLNRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSR 478

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHI 309
           KVSGPR+LQ SQ+GMLC +DTPEGEACGLVKNLALMTHITT+++E  + K+   +G E I
Sbjct: 479 KVSGPRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEENPIKKLCTALGCESI 538

Query: 310 AMFNGEELSSPGVYLVFVNGILAGIT 335
              +   L   G + +++NG L G T
Sbjct: 539 LGLDSATLHVEGNFGIYLNGTLLGTT 564



 Score =  163 bits (413), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 82/135 (60%), Positives = 96/135 (71%), Gaps = 17/135 (12%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGI--RPGVT-THLEIAPFTLLGVCAGIELLQY 748
           FDDFL EG +EYLDVNE NDS IA+ E  I   P  T THLEI PFT+LG  AG      
Sbjct: 636 FDDFLKEGLVEYLDVNEENDSLIALYEKDIGENPNATVTHLEIEPFTVLGAVAG------ 689

Query: 749 NKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVES 808
                   L+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ  RIDTL+Y +VY Q+PMV++
Sbjct: 690 --------LIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFRRIDTLLYFMVYPQQPMVKT 741

Query: 809 KTIRITNFHKLPAGK 823
           KTI + N+ KLPAG+
Sbjct: 742 KTIELINYDKLPAGQ 756



 Score =  106 bits (264), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 48/114 (42%), Positives = 84/114 (73%), Gaps = 1/114 (0%)

Query: 421 TSSVTMHSQRTSPLLSCKKLRQ-KRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKA 479
            + + + +Q+ + L   K+++  +R    K + + +  + +++T IAH+ V++++F+ KA
Sbjct: 284 AAKLEVFTQQQALLYLGKRVKTIRRAGAPKLSQLQEGIEAIATTIIAHLTVVDLQFREKA 343

Query: 480 MYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
           +Y+AVM RR+++A+ +P M+DDRDY GNKRLELAG L+SL+FED+FK+FNS+ K
Sbjct: 344 LYMAVMARRVIMAMHNPKMVDDRDYVGNKRLELAGQLMSLLFEDLFKKFNSDFK 397



 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 36/59 (61%), Positives = 51/59 (86%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           DKW L+ +FLK KGLVK H+DSF+YF++V++KK+++AN+ + SDVDP FY+KY+DI VG
Sbjct: 35  DKWNLLPAFLKIKGLVKQHLDSFNYFVDVDLKKILKANSLVLSDVDPDFYVKYIDIRVG 93



 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/88 (48%), Positives = 54/88 (61%), Gaps = 10/88 (11%)

Query: 319 SPGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEY 378
            P  Y+ +++     I   HK    P  +E         PHECRLRDLTYSAPI VD+EY
Sbjct: 80  DPDFYVKYID-----IRVGHKSTSPPGTKEVI-----LPPHECRLRDLTYSAPIYVDVEY 129

Query: 379 TRGSQRVVRSDLVIGRMPIMLQSSKCVL 406
           TRG + +   DL IGRMPIML+S+KC+L
Sbjct: 130 TRGRKIIRHYDLEIGRMPIMLRSNKCML 157


>gi|366989721|ref|XP_003674628.1| hypothetical protein NCAS_0B01700 [Naumovozyma castellii CBS 4309]
 gi|342300492|emb|CCC68254.1| hypothetical protein NCAS_0B01700 [Naumovozyma castellii CBS 4309]
          Length = 1150

 Score =  337 bits (864), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 154/263 (58%), Positives = 204/263 (77%), Gaps = 3/263 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ  RIDTL+Y ++Y Q+PMV++KTI + +
Sbjct: 688  GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMIYPQQPMVKTKTIELID 747

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+AVMSYSGYDIEDAL++NKAS+DRGFGRC   R +  VLK+YPN T D 
Sbjct: 748  YDKLPAGQNATVAVMSYSGYDIEDALVLNKASIDRGFGRCETRRKTTTVLKRYPNHTQD- 806

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT--PEY 1090
            I+G +   +  +P+++H+AL  DG+   G ++   Q+ +NKS+PT   + ++      +Y
Sbjct: 807  IIGGMRVDENGEPIWQHKALGADGLGEVGMKVESGQIYINKSVPTNQSNDMTTQAQQAQY 866

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            +E PV Y+   PS++++V++S +  D  LIK+LLRQ RRPE+GDKFSSRHGQKGV G+IV
Sbjct: 867  RETPVIYRAPEPSHIDQVMMSVSDNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCGIIV 926

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
            +QEDMPFN+ GI PDIIMNPHG 
Sbjct: 927  KQEDMPFNDQGIVPDIIMNPHGF 949



 Score =  280 bits (715), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 125/193 (64%), Positives = 160/193 (82%)

Query: 1180 TEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1239
             +Y+E PV Y+   PS++++V++S +  D  LIK+LLRQ RRPE+GDKFSSRHGQKGV G
Sbjct: 864  AQYRETPVIYRAPEPSHIDQVMMSVSDNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCG 923

Query: 1240 LIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTK 1299
            +IV+QEDMPFN+ GI PDIIMNPHG+PSRMTVGK+IEL++GKAG++ G+ + GT FGG+K
Sbjct: 924  IIVKQEDMPFNDQGIVPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGSLEYGTCFGGSK 983

Query: 1300 LVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPR 1359
            L D+ + L+  G+NY GKD+ YSGITGE L+AYI+ GP+YYQKLKHMV DK+HAR+RGPR
Sbjct: 984  LEDMSKILVDQGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPR 1043

Query: 1360 VVLTRQPTGRRWK 1372
             VLTRQPT  R +
Sbjct: 1044 AVLTRQPTEGRSR 1056



 Score =  187 bits (475), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 102/207 (49%), Positives = 143/207 (69%), Gaps = 11/207 (5%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPK-IKAAQFD--IV 189
           +D  DY  N  ++   Q  + ++ D+    + K+        DK++ K  +A ++D  + 
Sbjct: 368 VDDRDYVGNKRLELAGQLISLLFEDL----FKKFNSDFKATIDKVLKKPNRAMEYDALLS 423

Query: 190 NHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
            ++  + IT+ L  AI TGNW+++RFKMER GVT VLSRLSYIS LGMMTRI+SQFEK+R
Sbjct: 424 INVHSNNITSGLNRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSR 483

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHI 309
           KVSGPR+LQ SQ+GMLC +DTPEGEACGLVKNLALMTHITT+++E+ + ++ Y +G+E +
Sbjct: 484 KVSGPRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEEEPIKRLCYILGVEDV 543

Query: 310 AMFNGEELS-SPGVYLVFVNGILAGIT 335
           ++ +   L  + GVYL   NG L G T
Sbjct: 544 SLIDSASLHLNFGVYL---NGTLIGTT 567



 Score =  160 bits (405), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 77/132 (58%), Positives = 94/132 (71%), Gaps = 15/132 (11%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKR 751
           FDDFL  G +EYLDVNE NDS IA+ E  I    +THLEI PFT+LG  AG         
Sbjct: 639 FDDFLKLGLVEYLDVNEENDSFIALYEKDIESA-STHLEIEPFTILGAVAG--------- 688

Query: 752 FHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTI 811
                L+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ  RIDTL+Y ++Y Q+PMV++KTI
Sbjct: 689 -----LIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMIYPQQPMVKTKTI 743

Query: 812 RITNFHKLPAGK 823
            + ++ KLPAG+
Sbjct: 744 ELIDYDKLPAGQ 755



 Score =  103 bits (257), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 49/115 (42%), Positives = 81/115 (70%), Gaps = 2/115 (1%)

Query: 421 TSSVTMHSQRTSPLLSCKKLRQKRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAM 480
            S + +++Q+ +      K++  R Q  K + + +  + +++T +AH+ V  + F+ KA+
Sbjct: 292 ASRLNIYTQQQALEFIGTKVKTMRRQ--KLSVLQEGIEAIATTVVAHLTVEALDFREKAL 349

Query: 481 YLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELKET 535
           Y+A+M RR+V+A+ +P M+DDRDY GNKRLELAG L+SL+FED+FK+FNS+ K T
Sbjct: 350 YMAMMTRRVVMAIQNPKMVDDRDYVGNKRLELAGQLISLLFEDLFKKFNSDFKAT 404



 Score = 87.4 bits (215), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 38/59 (64%), Positives = 50/59 (84%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           DKW L+ +FLK KGLVK H+DSF+YF++V++KK+++AN  I SDVDP FYLKY+DI VG
Sbjct: 45  DKWNLLPAFLKVKGLVKQHLDSFNYFVDVDLKKIIKANQVILSDVDPEFYLKYVDIRVG 103



 Score = 80.9 bits (198), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 35/51 (68%), Positives = 42/51 (82%)

Query: 356 TTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVL 406
           T PHECRLRD+TYSAPI VDIEYTRG   ++  D+ +GRMPIML+S+KC L
Sbjct: 115 TPPHECRLRDMTYSAPIYVDIEYTRGRNIIMHKDVELGRMPIMLRSNKCTL 165


>gi|167382955|ref|XP_001733337.1| DNA-directed RNA polymerase III subunit RPC2 [Entamoeba dispar
            SAW760]
 gi|165901325|gb|EDR27409.1| DNA-directed RNA polymerase III subunit RPC2, putative [Entamoeba
            dispar SAW760]
          Length = 1115

 Score =  337 bits (864), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 155/264 (58%), Positives = 202/264 (76%), Gaps = 6/264 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G IGYNQ  RIDTL+Y L Y Q PMV++KTI + N
Sbjct: 684  GLIPYPHHNQSPRNTYQCAMGKQAIGTIGYNQFKRIDTLLYLLYYPQIPMVKTKTIDMIN 743

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNA +AVMSYSGYDIEDA I+NKAS+DRG+GRC VYR ++CV+K+Y N   DR
Sbjct: 744  FDKLPAGQNAMVAVMSYSGYDIEDASILNKASIDRGYGRCFVYRKAECVIKKYKNGACDR 803

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT---PE 1089
            ++ P    D  + + ++++LD DG+ +PG  +    + +NK +P  +V  ++  T    E
Sbjct: 804  VVCP---TDEERELPKYKSLDFDGVCSPGSILNPGSIYLNKQVPINTVGTLTTDTIKDDE 860

Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
            Y+   ++YKG VPSY+++VL++SN E+   +K+ LR +RRPE+GDKFSSRHGQKGV GLI
Sbjct: 861  YRREVLTYKGPVPSYVDQVLITSNEEEPLKVKISLRTSRRPELGDKFSSRHGQKGVTGLI 920

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
            V QEDMPF  +GICPD+IMNPHG 
Sbjct: 921  VNQEDMPFTNTGICPDVIMNPHGF 944



 Score =  279 bits (713), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 140/242 (57%), Positives = 178/242 (73%), Gaps = 20/242 (8%)

Query: 1151 EQEDMPFNES----GIC-PDIIMNPH-------------GLKGCDRIT--EYKEVPVSYK 1190
            E+ ++P  +S    G+C P  I+NP              G    D I   EY+   ++YK
Sbjct: 810  EERELPKYKSLDFDGVCSPGSILNPGSIYLNKQVPINTVGTLTTDTIKDDEYRREVLTYK 869

Query: 1191 GSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFN 1250
            G VPSY+++VL++SN E+   +K+ LR +RRPE+GDKFSSRHGQKGV GLIV QEDMPF 
Sbjct: 870  GPVPSYVDQVLITSNEEEPLKVKISLRTSRRPELGDKFSSRHGQKGVTGLIVNQEDMPFT 929

Query: 1251 ESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRH 1310
             +GICPD+IMNPHG+PSRMTVGKL+EL++GKAGLM+G++K GTAFGG KL D+ + LI  
Sbjct: 930  NTGICPDVIMNPHGFPSRMTVGKLLELVSGKAGLMDGSFKYGTAFGGDKLDDMSKILIEA 989

Query: 1311 GYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRR 1370
            GY+Y GK+  YSGITG+AL AYI+ GPVYYQKLKHMV DK+HAR+RGP+  LTRQPT  R
Sbjct: 990  GYSYDGKEELYSGITGKALNAYIFIGPVYYQKLKHMVLDKMHARARGPKSSLTRQPTEGR 1049

Query: 1371 WK 1372
             +
Sbjct: 1050 SR 1051



 Score =  207 bits (528), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 98/203 (48%), Positives = 141/203 (69%), Gaps = 3/203 (1%)

Query: 132 HIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVNH 191
            +D  DY+ N  ++   Q  + ++ D   LF     D+       +  K ++  FDI+  
Sbjct: 363 ELDDKDYYGNKRMELAGQLMSLLFED---LFKQFNTDLQNAANKGLTKKSRSETFDIIKC 419

Query: 192 MRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKV 251
           +    IT  L  ++ TGNW ++RF M+R G+TQVLSRLSYIS LGMMTR+NS FEKTRKV
Sbjct: 420 ISPHRITQGLIHSLSTGNWVLKRFNMDRAGITQVLSRLSYISALGMMTRLNSHFEKTRKV 479

Query: 252 SGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAM 311
           SGPRSLQGSQWGM+CPSDTPEGE+CGLVKN +L+T +TT++D++ ++ +++N+G+E   +
Sbjct: 480 SGPRSLQGSQWGMVCPSDTPEGESCGLVKNFSLLTEVTTDSDDQAIVTMLFNLGVEDANL 539

Query: 312 FNGEELSSPGVYLVFVNGILAGI 334
            +G+E+++   YLVF+NG L GI
Sbjct: 540 ISGDEVNALSSYLVFLNGQLLGI 562



 Score =  163 bits (413), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 83/136 (61%), Positives = 98/136 (72%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           GFK  +D L EG IEYLDVNE N+S+IA+SE+ I    TTHLEI P ++LGV AG     
Sbjct: 631 GFKSIEDCLKEGLIEYLDVNEENNSYIAISENEINEH-TTHLEIDPLSILGVVAG----- 684

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQA+G IGYNQ  RIDTL+Y L Y Q PMV+
Sbjct: 685 ---------LIPYPHHNQSPRNTYQCAMGKQAIGTIGYNQFKRIDTLLYLLYYPQIPMVK 735

Query: 808 SKTIRITNFHKLPAGK 823
           +KTI + NF KLPAG+
Sbjct: 736 TKTIDMINFDKLPAGQ 751



 Score = 90.5 bits (223), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 43/103 (41%), Positives = 67/103 (65%), Gaps = 1/103 (0%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           K+  +++ARD L++  + HI V    FK K +YLA+M+   +L   +   LDD+DYYGNK
Sbjct: 315 KRPKIEEARDVLANLVLPHIEVNRYNFKTKIIYLALMVN-WILKADETGELDDKDYYGNK 373

Query: 509 RLELAGSLLSLMFEDVFKRFNSELKETNLSGVVNLVSGWWFEL 551
           R+ELAG L+SL+FED+FK+FN++L+     G+        F++
Sbjct: 374 RMELAGQLMSLLFEDLFKQFNTDLQNAANKGLTKKSRSETFDI 416



 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/60 (56%), Positives = 48/60 (80%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           + DKW+L+ +F+K +GLV+ HIDSF+YFI+ EIK++++AN  I  D DP FYLKYLD+ V
Sbjct: 39  VEDKWRLIPAFVKARGLVRQHIDSFNYFIDEEIKQIVKANDKITCDADPTFYLKYLDVKV 98



 Score = 69.7 bits (169), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/61 (52%), Positives = 45/61 (73%), Gaps = 2/61 (3%)

Query: 351 NYTRQT-TPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNK 409
           +Y +++ TP ECRLRD++Y+API  +I+YTR  +++ R  + IG MPIMLQS  CVL N 
Sbjct: 106 DYKKESITPQECRLRDISYTAPILANIQYTR-DKKIFRKTVTIGYMPIMLQSKHCVLYNN 164

Query: 410 T 410
           T
Sbjct: 165 T 165


>gi|448527137|ref|XP_003869439.1| Ret1 protein [Candida orthopsilosis Co 90-125]
 gi|380353792|emb|CCG23304.1| Ret1 protein [Candida orthopsilosis]
          Length = 1149

 Score =  336 bits (862), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 160/265 (60%), Positives = 204/265 (76%), Gaps = 6/265 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ  RIDTL+Y +VY Q+PMV++KTI + N
Sbjct: 689  GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFRRIDTLLYFMVYPQQPMVKTKTIELIN 748

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+AVMSYSGYDIEDAL++NK+SLDRGFGRC V R +   LK+YPN + D 
Sbjct: 749  YDKLPAGQNATVAVMSYSGYDIEDALVLNKSSLDRGFGRCQVVRKNTVQLKKYPNHSKD- 807

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPE--- 1089
            IL  +   +  +P++ H+AL  DG+   G +I   QV  NK +PT S  + S+  P+   
Sbjct: 808  ILSGMRVDENDEPIFPHQALGPDGLGEVGSKIENGQVFANKCVPTNSGDS-SLGQPQQVE 866

Query: 1090 -YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
             ++E P+ YKG  PSY+++V++S +  D  LIK+LLRQTRRPE+GDKFSSRHGQKGV G+
Sbjct: 867  SHREAPLFYKGPEPSYVDQVMMSVSDNDQALIKVLLRQTRRPELGDKFSSRHGQKGVCGI 926

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            IV+QED+PFN+ GI PDIIMNPHG 
Sbjct: 927  IVQQEDLPFNDDGISPDIIMNPHGF 951



 Score =  278 bits (711), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 124/195 (63%), Positives = 163/195 (83%)

Query: 1178 RITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV 1237
            ++  ++E P+ YKG  PSY+++V++S +  D  LIK+LLRQTRRPE+GDKFSSRHGQKGV
Sbjct: 864  QVESHREAPLFYKGPEPSYVDQVMMSVSDNDQALIKVLLRQTRRPELGDKFSSRHGQKGV 923

Query: 1238 IGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGG 1297
             G+IV+QED+PFN+ GI PDIIMNPHG+PSRMTVGK+IEL++GKAG++ G+ + GT FGG
Sbjct: 924  CGIIVQQEDLPFNDDGISPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGSLEYGTCFGG 983

Query: 1298 TKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRG 1357
            +KL ++ + L+  G++Y GKD+ YSGITGE L+AYI+ GP+YYQKLKHMV DK+HAR+RG
Sbjct: 984  SKLEEMSKILVEKGFSYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARG 1043

Query: 1358 PRVVLTRQPTGRRWK 1372
            PR VLTRQPT  R +
Sbjct: 1044 PRAVLTRQPTEGRSR 1058



 Score =  187 bits (476), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 105/206 (50%), Positives = 137/206 (66%), Gaps = 7/206 (3%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPK-IKAAQFD--IV 189
           +D  DY  N  ++   Q  + ++ D   LF     D    I DKI+ K  + ++FD  + 
Sbjct: 363 VDDRDYVGNKRLELAGQLMSLLFED---LFKKFNSDFKANI-DKILKKPSRTSEFDALLS 418

Query: 190 NHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
            ++  + IT  L  AI TGNW+++RFKMER GVT VLSRLSYIS LGMMTRI+SQFEK+R
Sbjct: 419 INIHSNNITMGLNRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSR 478

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHI 309
           KVSGPR+LQ SQ+GMLC +DTPEGEACGLVKNLALMTHITT+++E  + K+   +G E I
Sbjct: 479 KVSGPRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEEGPIKKLCTALGCESI 538

Query: 310 AMFNGEELSSPGVYLVFVNGILAGIT 335
              +   L   G + V++NG L G T
Sbjct: 539 LGLDSATLHVEGNFGVYLNGTLLGAT 564



 Score =  163 bits (412), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 82/135 (60%), Positives = 96/135 (71%), Gaps = 17/135 (12%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGI--RPGVT-THLEIAPFTLLGVCAGIELLQY 748
           FDDFL EG +EYLDVNE NDS IA+ E  I   P  T THLEI PFT+LG  AG      
Sbjct: 636 FDDFLKEGLVEYLDVNEENDSLIALYEKDIGENPNATVTHLEIEPFTVLGAVAG------ 689

Query: 749 NKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVES 808
                   L+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ  RIDTL+Y +VY Q+PMV++
Sbjct: 690 --------LIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFRRIDTLLYFMVYPQQPMVKT 741

Query: 809 KTIRITNFHKLPAGK 823
           KTI + N+ KLPAG+
Sbjct: 742 KTIELINYDKLPAGQ 756



 Score =  105 bits (262), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 48/114 (42%), Positives = 84/114 (73%), Gaps = 1/114 (0%)

Query: 421 TSSVTMHSQRTSPLLSCKKLRQ-KRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKA 479
            + + + +Q+ + L   K+++  +R    K + + +  + +++T IAH+ V++++F+ KA
Sbjct: 284 AAKLEVFTQQQALLYLGKRVKTIRRAGAPKLSQLQEGIEAIATTIIAHLTVVDLQFREKA 343

Query: 480 MYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
           +Y+A+M RR+V+A+ +P M+DDRDY GNKRLELAG L+SL+FED+FK+FNS+ K
Sbjct: 344 LYMAMMARRVVMAMHNPKMVDDRDYVGNKRLELAGQLMSLLFEDLFKKFNSDFK 397



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/59 (61%), Positives = 50/59 (84%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           DKW L+ +FLK KGLVK H+DSF+YF++V++KK++ AN+ + SDVDP FY+KY+DI VG
Sbjct: 35  DKWNLLPAFLKIKGLVKQHLDSFNYFVDVDLKKILNANSLVLSDVDPDFYVKYIDIRVG 93



 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/88 (48%), Positives = 54/88 (61%), Gaps = 10/88 (11%)

Query: 319 SPGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEY 378
            P  Y+ +++     I   HK    P  +E         PHECRLRDLTYSAPI VD+EY
Sbjct: 80  DPDFYVKYID-----IRVGHKSTSPPGTKEVI-----LPPHECRLRDLTYSAPIYVDVEY 129

Query: 379 TRGSQRVVRSDLVIGRMPIMLQSSKCVL 406
           TRG + +   DL IGRMPIML+S+KC+L
Sbjct: 130 TRGRKIIRHYDLEIGRMPIMLRSNKCML 157


>gi|448103831|ref|XP_004200136.1| Piso0_002709 [Millerozyma farinosa CBS 7064]
 gi|359381558|emb|CCE82017.1| Piso0_002709 [Millerozyma farinosa CBS 7064]
          Length = 1158

 Score =  336 bits (862), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 158/269 (58%), Positives = 205/269 (76%), Gaps = 10/269 (3%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G IGYNQ  RIDTL+Y +VY Q+PMV++KTI + +
Sbjct: 694  GLIPYPHHNQSPRNTYQCAMGKQAIGAIGYNQFRRIDTLLYLMVYPQQPMVKTKTIELID 753

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+AVMSYSGYDIEDAL++NKAS+DRGFGRC V R +   LK+YPN T D 
Sbjct: 754  YDKLPAGQNATVAVMSYSGYDIEDALVLNKASIDRGFGRCQVLRKNTISLKRYPNHTKDI 813

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPE--- 1089
            + G  ++ +  +P++ H +L  DG+   G Q+   QV VNK +PT +  ++ + +P+   
Sbjct: 814  VAGMRVD-ENGEPIFSHSSLGTDGLGEVGMQVENGQVYVNKCVPTNAGESV-LGSPDQHV 871

Query: 1090 -----YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKG 1144
                 ++E P  YKG  PSY+++V++S    D  LIK+LLRQTRRPE+GDKFSSRHGQKG
Sbjct: 872  QSAESHRETPAYYKGPEPSYIDQVMMSVGDNDQALIKVLLRQTRRPELGDKFSSRHGQKG 931

Query: 1145 VIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            V G+IV+QED+PFN+ GI PDIIMNPHG 
Sbjct: 932  VCGIIVQQEDLPFNDDGITPDIIMNPHGF 960



 Score =  282 bits (722), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 125/191 (65%), Positives = 160/191 (83%)

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
            ++E P  YKG  PSY+++V++S    D  LIK+LLRQTRRPE+GDKFSSRHGQKGV G+I
Sbjct: 877  HRETPAYYKGPEPSYIDQVMMSVGDNDQALIKVLLRQTRRPELGDKFSSRHGQKGVCGII 936

Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
            V+QED+PFN+ GI PDIIMNPHG+PSRMTVGK++EL++GKAG++ G+ + GT FGG+KL 
Sbjct: 937  VQQEDLPFNDDGITPDIIMNPHGFPSRMTVGKMLELISGKAGVLNGSLEYGTCFGGSKLE 996

Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
            D+ + L+ HG+NY GKD+ YSGITGE ++AYI+ GP+YYQKLKHMV DK+HAR+RGPR V
Sbjct: 997  DMSKILVDHGFNYSGKDMLYSGITGECMQAYIFFGPIYYQKLKHMVLDKMHARARGPRAV 1056

Query: 1362 LTRQPTGRRWK 1372
            LTRQPT  R +
Sbjct: 1057 LTRQPTEGRSR 1067



 Score =  186 bits (471), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 124/338 (36%), Positives = 189/338 (55%), Gaps = 31/338 (9%)

Query: 20  LKHHPIGTPGPAYIFFLLEGLQAIL------------FLPLFKQVDFGDS---KVVSLRE 64
           LKH+ I    P  I     G+ + L            +  LF  V+F ++   +V++ ++
Sbjct: 241 LKHNSIAEDVPIVIVLKAAGITSDLEILQLVCGQDPNYQDLFA-VNFEEAARLEVLTQQQ 299

Query: 65  LLSHVTYQKRLYRLTVQPNWLGTVKAVHGTYLTMVTDETSKLKDSPEIRDKWKLVLSFLK 124
            L+++  + +  R    P      + +     T++   T       + R+K  L ++ + 
Sbjct: 300 ALNYIGKRVKTIRRAGAPKLSQLQEGIEAVATTIIAHITVS---DLQFREK-ALYIATMT 355

Query: 125 EKGLVKPH----IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPK 180
            + L+  H    +D  DY  N  ++   Q  + ++ D   LF     D    I DK++ K
Sbjct: 356 RRVLMTMHNPKMVDDRDYVGNKRLELAGQLLSLLFED---LFKKFNSDFKANI-DKVLKK 411

Query: 181 -IKAAQFD--IVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGM 237
             + ++FD  +  ++  + IT  +  AI TGNW+++RFKMER GVT VLSRLSYIS LGM
Sbjct: 412 PSRTSEFDALLSINIHSNNITMGMNRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGM 471

Query: 238 MTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNM 297
           MTRI+SQFEK+RKVSGPR+LQ SQ+GMLC SDTPEGEACGLVKNLALMTHITT+++E  +
Sbjct: 472 MTRISSQFEKSRKVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTDDEELPV 531

Query: 298 LKIMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAGIT 335
             + + +G E+I   +   L +   + +++NG L G T
Sbjct: 532 KNLCFTLGCENILEIDSATLHAVTNFGIYLNGTLIGAT 569



 Score =  158 bits (400), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 78/134 (58%), Positives = 95/134 (70%), Gaps = 16/134 (11%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVT--THLEIAPFTLLGVCAGIELLQYN 749
           FDDFL  G +EYLDVNE NDS IA+ E  ++      THLEI PFT+LG  AG       
Sbjct: 642 FDDFLKHGLVEYLDVNEENDSLIALYEEDLKNTHQEFTHLEIEPFTVLGAVAG------- 694

Query: 750 KRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESK 809
                  L+PYPHHNQ+PRNTYQCAMGKQA+G IGYNQ  RIDTL+Y +VY Q+PMV++K
Sbjct: 695 -------LIPYPHHNQSPRNTYQCAMGKQAIGAIGYNQFRRIDTLLYLMVYPQQPMVKTK 747

Query: 810 TIRITNFHKLPAGK 823
           TI + ++ KLPAG+
Sbjct: 748 TIELIDYDKLPAGQ 761



 Score =  101 bits (252), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 45/91 (49%), Positives = 69/91 (75%)

Query: 443 KRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDR 502
           +R    K + + +  + +++T IAHI V +++F+ KA+Y+A M RR+++ + +P M+DDR
Sbjct: 312 RRAGAPKLSQLQEGIEAVATTIIAHITVSDLQFREKALYIATMTRRVLMTMHNPKMVDDR 371

Query: 503 DYYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
           DY GNKRLELAG LLSL+FED+FK+FNS+ K
Sbjct: 372 DYVGNKRLELAGQLLSLLFEDLFKKFNSDFK 402



 Score = 87.8 bits (216), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 38/59 (64%), Positives = 50/59 (84%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           DKW L+ +FLK KGLVK H+DSF+YF++V++KK+++AN  + SDVDP FYLKYLDI VG
Sbjct: 40  DKWNLLPAFLKVKGLVKQHLDSFNYFVDVDLKKIIKANELVLSDVDPEFYLKYLDIRVG 98



 Score = 87.0 bits (214), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 61/170 (35%), Positives = 86/170 (50%), Gaps = 32/170 (18%)

Query: 247 KTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGI 306
           K RK++ P +    +W +L P+     +  GLVK      H+ + N         Y + +
Sbjct: 27  KGRKLTDPINTTEDKWNLL-PAFL---KVKGLVKQ-----HLDSFN---------YFVDV 68

Query: 307 EHIAMFNGEELS----SPGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHECR 362
           +   +    EL      P  YL +++     I   HK    P  +E         PHECR
Sbjct: 69  DLKKIIKANELVLSDVDPEFYLKYLD-----IRVGHKSSSPPGTKEV-----NLAPHECR 118

Query: 363 LRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKTEY 412
           LRDLTYSAPI VD+EYTRG + ++  DL IGRMPIML+S+KC+L    E+
Sbjct: 119 LRDLTYSAPIYVDVEYTRGRKIIMHKDLEIGRMPIMLRSNKCILDGIDEH 168


>gi|320581721|gb|EFW95940.1| DNA-directed RNA polymerase III [Ogataea parapolymorpha DL-1]
          Length = 1138

 Score =  336 bits (862), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 155/267 (58%), Positives = 203/267 (76%), Gaps = 7/267 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ  RIDTL+Y + Y Q+PMV++KTI + +
Sbjct: 675  GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFRRIDTLLYLMCYPQQPMVKTKTIELID 734

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+AVMSYSGYDIEDAL++NKAS+DRGFGRC V R +  VLK+YPN + D 
Sbjct: 735  YDKLPAGQNATVAVMSYSGYDIEDALVLNKASIDRGFGRCQVLRKTTAVLKRYPNHSKDI 794

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATP---- 1088
            + G  ++ D  KP+++H AL  DG+   G ++   Q  +NK +PT +  ++    P    
Sbjct: 795  LAGMRVKEDG-KPIFQHEALGPDGLAEVGVEVQSGQTYINKCVPTNATESVVGGQPTINQ 853

Query: 1089 --EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVI 1146
              +++E PV+Y+  V S +++V++S +  D  LIK+LLRQTRRPE+GDKFSSRHGQKGV 
Sbjct: 854  QQQHRETPVNYRAPVSSVVDQVMMSVSDNDQALIKVLLRQTRRPELGDKFSSRHGQKGVC 913

Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G+IV+QEDMPFN+ GI PDIIMNPHG 
Sbjct: 914  GIIVQQEDMPFNDDGISPDIIMNPHGF 940



 Score =  281 bits (719), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 126/192 (65%), Positives = 163/192 (84%)

Query: 1181 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1240
            +++E PV+Y+  V S +++V++S +  D  LIK+LLRQTRRPE+GDKFSSRHGQKGV G+
Sbjct: 856  QHRETPVNYRAPVSSVVDQVMMSVSDNDQALIKVLLRQTRRPELGDKFSSRHGQKGVCGI 915

Query: 1241 IVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKL 1300
            IV+QEDMPFN+ GI PDIIMNPHG+PSRMTVGK++EL++GKAG+++G+ + GT FGG+KL
Sbjct: 916  IVQQEDMPFNDDGISPDIIMNPHGFPSRMTVGKMLELVSGKAGVLDGSLQYGTCFGGSKL 975

Query: 1301 VDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRV 1360
             D+ + LI  G+NY GKD+ YSGITGEAL+AYI+ GP+YYQKLKHMV DK+HAR+RGPR 
Sbjct: 976  EDMSQILIDKGFNYSGKDMLYSGITGEALQAYIFFGPIYYQKLKHMVLDKMHARARGPRA 1035

Query: 1361 VLTRQPTGRRWK 1372
            VLTRQPT  R +
Sbjct: 1036 VLTRQPTEGRSR 1047



 Score =  198 bits (504), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 130/341 (38%), Positives = 189/341 (55%), Gaps = 37/341 (10%)

Query: 20  LKHHPIGTPGPAYIFFLLEGLQAIL------------FLPLFKQVDFGDSK---VVSLRE 64
           LKH+ I    P  I     GL + L            +  LF  V+F ++    + S +E
Sbjct: 226 LKHNSISEEIPIVIVLKAAGLVSDLEILQLVCGNDSVYQDLFA-VNFEEAAKLGIYSQKE 284

Query: 65  LLSHVTYQKRLYRLTVQPNW---LGTVKAVHGTYLTMVTDETSKLKDSPEIRDKWKLVLS 121
            L ++  + +  R    P        ++A+  T +  +T E    K+         L ++
Sbjct: 285 ALEYIGRKVKTIRRLNAPKLSILQEGIEAIATTVIAHITVENLDFKEKA-------LYIA 337

Query: 122 FLKEKGLVKPH----IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKI 177
            +  + ++  H    +D  DY  N  ++   Q  + ++ D+    + K+ +      DKI
Sbjct: 338 IMTRRVIMAMHNPKLVDDRDYVGNKRLELAGQLMSLLFEDL----FKKFNNDFKANLDKI 393

Query: 178 IPK-IKAAQFDIVNHMR--QDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISG 234
           + K  + ++FD + H+      IT  L  AI TGNW+++RFKMER GVT VLSRLSYIS 
Sbjct: 394 LKKPSRVSEFDALLHINIHSSNITTGLNRAISTGNWSLKRFKMERAGVTHVLSRLSYISA 453

Query: 235 LGMMTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDE 294
           LGMMTRI+SQFEK+RKVSGPR+LQ SQ+GMLC SDTPEGEACGLVKNLALMTHITT+++E
Sbjct: 454 LGMMTRISSQFEKSRKVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTDDEE 513

Query: 295 KNMLKIMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAGIT 335
             + K+ Y +G E I++ +   L + G + V +NG L G T
Sbjct: 514 DPIKKLCYILGAEDISVIDSSTLHNNGTFGVHLNGTLIGTT 554



 Score =  161 bits (407), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 79/132 (59%), Positives = 94/132 (71%), Gaps = 15/132 (11%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKR 751
           FDDFL  G +EYLDVNE NDS IA+ E  I  G TTHLEI PFT+LG  AG         
Sbjct: 626 FDDFLTNGLVEYLDVNEENDSLIALYEKDI-TGSTTHLEIEPFTVLGAVAG--------- 675

Query: 752 FHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTI 811
                L+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ  RIDTL+Y + Y Q+PMV++KTI
Sbjct: 676 -----LIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFRRIDTLLYLMCYPQQPMVKTKTI 730

Query: 812 RITNFHKLPAGK 823
            + ++ KLPAG+
Sbjct: 731 ELIDYDKLPAGQ 742



 Score =  105 bits (262), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 50/122 (40%), Positives = 86/122 (70%), Gaps = 2/122 (1%)

Query: 421 TSSVTMHSQRTSPLLSCKKLRQ-KRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKA 479
            + + ++SQ+ +     +K++  +R    K + + +  + +++T IAHI V N+ FK KA
Sbjct: 274 AAKLGIYSQKEALEYIGRKVKTIRRLNAPKLSILQEGIEAIATTVIAHITVENLDFKEKA 333

Query: 480 MYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELKETNLSG 539
           +Y+A+M RR+++A+ +P ++DDRDY GNKRLELAG L+SL+FED+FK+FN++ K  NL  
Sbjct: 334 LYIAIMTRRVIMAMHNPKLVDDRDYVGNKRLELAGQLMSLLFEDLFKKFNNDFK-ANLDK 392

Query: 540 VV 541
           ++
Sbjct: 393 IL 394



 Score = 87.8 bits (216), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 38/54 (70%), Positives = 45/54 (83%)

Query: 358 PHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKTE 411
           PHECRLRDLTYSAPI VD+EYTRG + ++  DL IGRMPIML+S+KC+L  K E
Sbjct: 99  PHECRLRDLTYSAPIYVDVEYTRGRKIIIHRDLEIGRMPIMLRSNKCILNGKNE 152



 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 36/59 (61%), Positives = 49/59 (83%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           DKW L+ +FL+ KGLVK H+DSF++F++ ++KK++QAN  + SDVDP FYLKYLDI VG
Sbjct: 25  DKWNLLPAFLQVKGLVKQHLDSFNFFVDTDLKKIIQANEKVLSDVDPEFYLKYLDIRVG 83


>gi|328853924|gb|EGG03059.1| hypothetical protein MELLADRAFT_49581 [Melampsora larici-populina
            98AG31]
          Length = 1135

 Score =  336 bits (861), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 156/265 (58%), Positives = 199/265 (75%), Gaps = 5/265 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ +RIDTL+Y +VY   PMV +KTI +  
Sbjct: 673  GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLHRIDTLLYLMVYPHHPMVRTKTIELVG 732

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+AVMSYSGYDIEDALI+NKASLDRGFGRC V+R +  ++K+YPN T+DR
Sbjct: 733  YDKLPAGQNATVAVMSYSGYDIEDALILNKASLDRGFGRCQVFRKATAMIKRYPNGTYDR 792

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPT----ISVSAISMATP 1088
            I  P  + D  + + + +  D+ G+   G ++    V VNK  P+     SV+  +    
Sbjct: 793  IADPPRDTDG-QILEKWKPCDEGGVADVGMKVFSGNVYVNKQTPSNANDNSVAGGAATVT 851

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
             +   P++Y+G++PSY++KVLV+    D  L+K+LLRQTRRPE+GDKFSSRHGQKGV GL
Sbjct: 852  AWNNTPMTYRGTIPSYIDKVLVTDTESDQTLVKVLLRQTRRPELGDKFSSRHGQKGVCGL 911

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            IV+QEDMPFN+ G CPDIIMNPHG 
Sbjct: 912  IVQQEDMPFNDHGSCPDIIMNPHGF 936



 Score =  288 bits (738), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 129/196 (65%), Positives = 162/196 (82%)

Query: 1175 GCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQ 1234
            G   +T +   P++Y+G++PSY++KVLV+    D  L+K+LLRQTRRPE+GDKFSSRHGQ
Sbjct: 846  GAATVTAWNNTPMTYRGTIPSYIDKVLVTDTESDQTLVKVLLRQTRRPELGDKFSSRHGQ 905

Query: 1235 KGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTA 1294
            KGV GLIV+QEDMPFN+ G CPDIIMNPHG+PSRMTVGK++ELL+GKAG++ G  + GTA
Sbjct: 906  KGVCGLIVQQEDMPFNDHGSCPDIIMNPHGFPSRMTVGKMLELLSGKAGVLRGTVEYGTA 965

Query: 1295 FGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHAR 1354
            FGG+K V++ + LI HGY+Y GKD   SGITG+ALE Y++ GP+YYQKLKHMV DK+HAR
Sbjct: 966  FGGSKAVEMSKILIEHGYSYLGKDYLTSGITGQALEHYVFMGPIYYQKLKHMVLDKMHAR 1025

Query: 1355 SRGPRVVLTRQPTGRR 1370
            +RGPR VLTRQPT  R
Sbjct: 1026 ARGPRAVLTRQPTEGR 1041



 Score =  216 bits (550), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 114/206 (55%), Positives = 143/206 (69%), Gaps = 7/206 (3%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKI-KAAQFDIVNH 191
           +D  DY  N  ++   Q  + ++ D   LF     D+ + I DKI+ K  +  +FD +N 
Sbjct: 351 VDDRDYVGNKRLELAGQLLSLLFED---LFKKFNTDLKMNI-DKILKKPNRTTEFDAINQ 406

Query: 192 MRQ--DTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
            R   D I++    AI TGNW+I+RFKMER G+T VLSRLSYIS LGMMTRI+SQFEKTR
Sbjct: 407 FRMHGDHISHGFIRAISTGNWSIKRFKMERAGITHVLSRLSYISALGMMTRISSQFEKTR 466

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHI 309
           KVSGPR+LQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT+ DE+ +  + Y IG E I
Sbjct: 467 KVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDVDEEPIWNVAYTIGCEDI 526

Query: 310 AMFNGEELSSPGVYLVFVNGILAGIT 335
           +   G EL  P  Y+VF+NG + G++
Sbjct: 527 SSVTGTELYLPRHYIVFINGNILGLS 552



 Score =  157 bits (396), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 78/132 (59%), Positives = 90/132 (68%), Gaps = 15/132 (11%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKR 751
           FDDFL  G IEYLD NE NDS IA+ E  +    TTHLEI PFTLLG  AG         
Sbjct: 624 FDDFLTAGLIEYLDCNEENDSFIALYEEDVDQ-FTTHLEIEPFTLLGAVAG--------- 673

Query: 752 FHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTI 811
                L+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ +RIDTL+Y +VY   PMV +KTI
Sbjct: 674 -----LIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLHRIDTLLYLMVYPHHPMVRTKTI 728

Query: 812 RITNFHKLPAGK 823
            +  + KLPAG+
Sbjct: 729 ELVGYDKLPAGQ 740



 Score =  110 bits (275), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 50/98 (51%), Positives = 74/98 (75%)

Query: 436 SCKKLRQKRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSD 495
           S K +++    T K+   ++A + LS+  +AH+P  NM  + KA+YLAVM RR++ A+++
Sbjct: 288 SVKVMKKGPMVTVKRPLSEEALEVLSTVVLAHVPAENMNLQPKALYLAVMARRVIQAMAN 347

Query: 496 PDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
           P ++DDRDY GNKRLELAG LLSL+FED+FK+FN++LK
Sbjct: 348 PKLVDDRDYVGNKRLELAGQLLSLLFEDLFKKFNTDLK 385



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 38/61 (62%), Positives = 52/61 (85%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           + DKW+L+ +FLK KGLVK HIDSF+YF++VE+K +++ANA + SDVDP F+L YLDI+V
Sbjct: 18  VEDKWQLLPAFLKVKGLVKQHIDSFNYFVDVELKAILRANATVVSDVDPNFHLTYLDINV 77

Query: 172 G 172
           G
Sbjct: 78  G 78



 Score = 87.8 bits (216), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 40/72 (55%), Positives = 57/72 (79%), Gaps = 2/72 (2%)

Query: 340 EVCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIML 399
           E C+ +   + N  ++ TPHECRLRD+TYSAPI+V I+YT+G++RV+   + IGRMPIML
Sbjct: 79  EPCRLDTGSATN--KRITPHECRLRDITYSAPISVTIQYTKGNKRVLSKGIPIGRMPIML 136

Query: 400 QSSKCVLRNKTE 411
           +S+KCVL NK++
Sbjct: 137 RSNKCVLTNKSD 148


>gi|156839387|ref|XP_001643385.1| hypothetical protein Kpol_479p15 [Vanderwaltozyma polyspora DSM
            70294]
 gi|156113993|gb|EDO15527.1| hypothetical protein Kpol_479p15 [Vanderwaltozyma polyspora DSM
            70294]
          Length = 1139

 Score =  335 bits (860), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 156/262 (59%), Positives = 199/262 (75%), Gaps = 2/262 (0%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ  RIDTL+Y ++Y Q+PMV++KTI + +
Sbjct: 679  GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMIYPQQPMVKTKTIELID 738

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+AVMSYSGYDIEDAL++NK+S+DRGFGRC   R +  VLK+YPN T D 
Sbjct: 739  YDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCETRRKTTTVLKKYPNHTQD- 797

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT-PEYK 1091
            I+G +   +  KP+++H  L  DG+   G Q+   Q+ +NKS+PT S   +   T  +YK
Sbjct: 798  IIGGMRVDENGKPIWQHEPLGPDGLGEVGVQVTSGQIYINKSVPTNSGEGVLANTQAQYK 857

Query: 1092 EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVE 1151
            E PV Y+   PS +++V++S +  D  LIK+LLRQ RRPE+GDKFSSRHGQKGV G+IV 
Sbjct: 858  ETPVIYRAPEPSRIDQVMMSVSDNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCGIIVN 917

Query: 1152 QEDMPFNESGICPDIIMNPHGL 1173
             EDMPFN+ GI PDIIMNPHG 
Sbjct: 918  HEDMPFNDDGISPDIIMNPHGF 939



 Score =  275 bits (704), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 125/193 (64%), Positives = 156/193 (80%)

Query: 1180 TEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1239
             +YKE PV Y+   PS +++V++S +  D  LIK+LLRQ RRPE+GDKFSSRHGQKGV G
Sbjct: 854  AQYKETPVIYRAPEPSRIDQVMMSVSDNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCG 913

Query: 1240 LIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTK 1299
            +IV  EDMPFN+ GI PDIIMNPHG+PSRMTVGK+IEL++GKAG++ G+ + GT FGG+K
Sbjct: 914  IIVNHEDMPFNDDGISPDIIMNPHGFPSRMTVGKMIELVSGKAGVLNGSLEYGTCFGGSK 973

Query: 1300 LVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPR 1359
            L D+   L+  G+NY GKD+ YSGITGE L+AYI+ GP+YYQKLKHMV DK+HAR+RGPR
Sbjct: 974  LEDMSRILVDKGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPR 1033

Query: 1360 VVLTRQPTGRRWK 1372
             VLTRQPT  R +
Sbjct: 1034 AVLTRQPTEGRSR 1046



 Score =  183 bits (465), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 125/333 (37%), Positives = 187/333 (56%), Gaps = 30/333 (9%)

Query: 20  LKHHPIGTPGPAYIFFLLEGLQA---ILFLPLFKQVDFGDSKVVSLRELLSHVTYQKRLY 76
           LKH+ I    P  I     G+ +   I+ L       + D   V+L E   +  Y +R  
Sbjct: 235 LKHNSIAEEVPIAIVLKACGIISDLEIMQLVCGNDSSYQDIFAVNLEEAAKYNIYTQRQA 294

Query: 77  RLTVQPNWLGTVKAVHGTYLTMVTDETSKLK---------DSPEIRDKWKLVLSFLKEKG 127
              +     G VK +    L+++ +    +          ++ + R+K  L ++ +  + 
Sbjct: 295 LEYIG----GKVKTIRRQKLSILQEGIEAIATTVIAHLTVEALDFREK-ALYVAMMARRV 349

Query: 128 LVKPH----IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPK-IK 182
           ++  H    +D  DY  N  ++   Q  + ++ D   LF     D    I DK++ K  +
Sbjct: 350 VMAMHNPKMVDDRDYVGNKRLELAGQLISLLFED---LFKKFNSDFKASI-DKVLKKPNR 405

Query: 183 AAQFD--IVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTR 240
           A ++D  +  ++  + IT+ L  AI TGNW+++RFKMER GVT VLSRLSYIS LGMMTR
Sbjct: 406 AMEYDALLSINVHSNNITSGLNRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTR 465

Query: 241 INSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKI 300
           I+SQFEK+RKVSGPR+LQ SQ+GMLC +DTPEGEACGLVKNLALMTHITT+++E+ +  +
Sbjct: 466 ISSQFEKSRKVSGPRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEEEPIKNL 525

Query: 301 MYNIGIEHIAMFNGEELSSPGVYLVFVNGILAG 333
            + +G+E+I + +   L     Y V +NG L G
Sbjct: 526 CFVLGVENICLVDSATLHLN--YTVHLNGTLIG 556



 Score =  159 bits (402), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 77/132 (58%), Positives = 94/132 (71%), Gaps = 15/132 (11%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKR 751
           FDDFL  G +EYLDVNE NDS IA+ E  I   VT H+EI PFT+LG  AG         
Sbjct: 630 FDDFLKLGLVEYLDVNEENDSFIALYEKDINENVT-HMEIEPFTVLGAVAG--------- 679

Query: 752 FHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTI 811
                L+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ  RIDTL+Y ++Y Q+PMV++KTI
Sbjct: 680 -----LIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMIYPQQPMVKTKTI 734

Query: 812 RITNFHKLPAGK 823
            + ++ KLPAG+
Sbjct: 735 ELIDYDKLPAGQ 746



 Score =  100 bits (250), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 49/111 (44%), Positives = 79/111 (71%), Gaps = 2/111 (1%)

Query: 425 TMHSQRTSPLLSCKKLRQKRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAV 484
            +++QR +      K++  R Q  K + + +  + +++T IAH+ V  + F+ KA+Y+A+
Sbjct: 287 NIYTQRQALEYIGGKVKTIRRQ--KLSILQEGIEAIATTVIAHLTVEALDFREKALYVAM 344

Query: 485 MIRRMVLALSDPDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELKET 535
           M RR+V+A+ +P M+DDRDY GNKRLELAG L+SL+FED+FK+FNS+ K +
Sbjct: 345 MARRVVMAMHNPKMVDDRDYVGNKRLELAGQLISLLFEDLFKKFNSDFKAS 395



 Score = 86.7 bits (213), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 40/69 (57%), Positives = 54/69 (78%), Gaps = 1/69 (1%)

Query: 105 KLKDS-PEIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFY 163
           KL D+     DKW L+ +FLK KGLVK H+DSF+YF++V++KK+++AN  I SDVDP FY
Sbjct: 26  KLTDAVSTAEDKWNLLPAFLKVKGLVKQHLDSFNYFVDVDLKKIIKANQLILSDVDPEFY 85

Query: 164 LKYLDIHVG 172
           LKY+DI +G
Sbjct: 86  LKYVDIRIG 94



 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/51 (70%), Positives = 43/51 (84%)

Query: 356 TTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVL 406
           T PHECRLRD+TYSAPI VDIEYTRG   ++  D+ IGRMPIML+S+KC+L
Sbjct: 106 TPPHECRLRDMTYSAPIYVDIEYTRGRNIIMHKDVEIGRMPIMLRSNKCIL 156


>gi|50292925|ref|XP_448895.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49528208|emb|CAG61865.1| unnamed protein product [Candida glabrata]
          Length = 1133

 Score =  335 bits (860), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 152/261 (58%), Positives = 203/261 (77%), Gaps = 1/261 (0%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ  RIDTL+Y ++Y Q+PMV++KTI + +
Sbjct: 674  GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMIYPQQPMVKTKTIELID 733

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+AVMSYSGYDIEDAL++NK+S+DRGFGRC   R +  VLK+YPN T D 
Sbjct: 734  YDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCETRRKTTTVLKKYPNHTKDA 793

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKE 1092
            + G  ++ +  + +++H +L  DG+   G +I   Q+ +NKS+P  S  A+++   +Y+E
Sbjct: 794  LCGMRVD-ENGEAIWQHESLGPDGLGEVGLKIRSGQIYINKSVPVQSSDAMAVNQAQYRE 852

Query: 1093 VPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQ 1152
             PV Y+    S +++V++S++  D  LIK+LLRQ RRPE+GDKFSSRHGQKGV G+IV+Q
Sbjct: 853  TPVIYRAPELSIIDQVMMSTSDNDQDLIKVLLRQNRRPELGDKFSSRHGQKGVCGIIVQQ 912

Query: 1153 EDMPFNESGICPDIIMNPHGL 1173
            EDMPFN+ GICPDIIMNPHG 
Sbjct: 913  EDMPFNDQGICPDIIMNPHGF 933



 Score =  280 bits (715), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 125/193 (64%), Positives = 160/193 (82%)

Query: 1180 TEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1239
             +Y+E PV Y+    S +++V++S++  D  LIK+LLRQ RRPE+GDKFSSRHGQKGV G
Sbjct: 848  AQYRETPVIYRAPELSIIDQVMMSTSDNDQDLIKVLLRQNRRPELGDKFSSRHGQKGVCG 907

Query: 1240 LIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTK 1299
            +IV+QEDMPFN+ GICPDIIMNPHG+PSRMTVGK+IEL++GKAG++ G+ + GT FGG+K
Sbjct: 908  IIVQQEDMPFNDQGICPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGSLEYGTCFGGSK 967

Query: 1300 LVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPR 1359
            L D+ + L+  G+NY GKD+ YSGITGE L+AYI+ GP+YYQKLKHMV DK+HAR+RGPR
Sbjct: 968  LEDMSKILVDQGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPR 1027

Query: 1360 VVLTRQPTGRRWK 1372
             VLTRQPT  R +
Sbjct: 1028 AVLTRQPTEGRSR 1040



 Score =  189 bits (480), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 105/206 (50%), Positives = 143/206 (69%), Gaps = 9/206 (4%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPK-IKAAQFD--IV 189
           +D  DY  N  ++   Q  + ++ D   LF     D  + I DK++ K  +A ++D  + 
Sbjct: 354 VDDRDYVGNKRLELAGQLISLLFED---LFKKFNNDFKLSI-DKVLKKPNRAMEYDALLS 409

Query: 190 NHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
            ++  + IT+ L  AI TGNW+++RFKMER GVT VLSRLSYIS LGMMTRI+SQFEK+R
Sbjct: 410 INVHSNNITSGLNRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSR 469

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHI 309
           KVSGPR+LQ SQ+GMLC +DTPEGEACGLVKNLALMTHITT+++E+ + K+ Y +G+E I
Sbjct: 470 KVSGPRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEEEPIRKLCYVLGVEPI 529

Query: 310 AMFNGEELSSPGVYLVFVNGILAGIT 335
           ++ +   L     Y V++NG L G T
Sbjct: 530 SLLDSASLHLN--YGVYLNGTLIGTT 553



 Score =  160 bits (404), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 77/132 (58%), Positives = 95/132 (71%), Gaps = 15/132 (11%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKR 751
           FDDFL  G +EYLDVNE NDS+IA+ E  I   +T HLEI PFT+LG  AG         
Sbjct: 625 FDDFLKLGLVEYLDVNEENDSYIALYEKDITHDIT-HLEIEPFTVLGAVAG--------- 674

Query: 752 FHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTI 811
                L+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ  RIDTL+Y ++Y Q+PMV++KTI
Sbjct: 675 -----LIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMIYPQQPMVKTKTI 729

Query: 812 RITNFHKLPAGK 823
            + ++ KLPAG+
Sbjct: 730 ELIDYDKLPAGQ 741



 Score =  100 bits (248), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 45/91 (49%), Positives = 68/91 (74%)

Query: 443 KRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDR 502
           K  +  K T + +  + +++T IAH+ V  + F+ KA+Y+A M RR+V+A+ +P M+DDR
Sbjct: 298 KTMRRQKLTILQEGIEAIATTIIAHLTVEALDFREKALYIATMTRRVVMAMHNPKMVDDR 357

Query: 503 DYYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
           DY GNKRLELAG L+SL+FED+FK+FN++ K
Sbjct: 358 DYVGNKRLELAGQLISLLFEDLFKKFNNDFK 388



 Score = 87.0 bits (214), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 38/59 (64%), Positives = 50/59 (84%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           DKW L+ +FLK KGLVK H+DSF+YF++V++KK+++AN  I SDVDP FYLKY+DI VG
Sbjct: 31  DKWNLLPAFLKVKGLVKQHLDSFNYFVDVDLKKIIKANQLILSDVDPEFYLKYVDIRVG 89



 Score = 80.9 bits (198), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 35/54 (64%), Positives = 43/54 (79%)

Query: 358 PHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKTE 411
           PHECRLRD+TYSAPI VDIEYTRG   ++  ++ IGRMPIML+S+KC+L    E
Sbjct: 103 PHECRLRDMTYSAPIYVDIEYTRGRNIIMHKNVEIGRMPIMLRSNKCILHGADE 156


>gi|320165828|gb|EFW42727.1| polymerase III polypeptide B [Capsaspora owczarzaki ATCC 30864]
          Length = 1138

 Score =  335 bits (860), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 159/264 (60%), Positives = 194/264 (73%), Gaps = 3/264 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            G++PYPHHNQ+PRNTYQCAMGKQA+G I  NQ  R DTL+Y L+Y QRPMV+++TI + +
Sbjct: 678  GIIPYPHHNQSPRNTYQCAMGKQAIGTIAANQYVRFDTLLYTLLYPQRPMVQTRTIELID 737

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            FH +PAGQNA +AVMSYSGYDIEDALI+N+ASLDRGFGRC+VYR     +K YPN   DR
Sbjct: 738  FHNMPAGQNACVAVMSYSGYDIEDALILNQASLDRGFGRCMVYRKQTVSIKTYPNMLVDR 797

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAIS---MATPE 1089
            I+ P    D    + +   LDQ+GI  PGE++     LV K  P  + + I     A  +
Sbjct: 798  IVAPTRNRDDSSRLAKFDVLDQEGICRPGERVENGSTLVLKETPVNTSNPIQDPHNAAVQ 857

Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
            YK   VSYKG     ++KVL+++NSED  LIK+LLR TRRPE+GDKFSSRHGQKGV GLI
Sbjct: 858  YKPAYVSYKGPCEGVVDKVLLTNNSEDNHLIKILLRTTRRPEVGDKFSSRHGQKGVCGLI 917

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
            V QEDMPF++ GICPDIIMNPHG 
Sbjct: 918  VRQEDMPFSDIGICPDIIMNPHGF 941



 Score =  284 bits (726), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 141/234 (60%), Positives = 173/234 (73%), Gaps = 9/234 (3%)

Query: 1139 RHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLE 1198
            R G++   G  +  ++ P N S    + I +PH     +   +YK   VSYKG     ++
Sbjct: 824  RPGERVENGSTLVLKETPVNTS----NPIQDPH-----NAAVQYKPAYVSYKGPCEGVVD 874

Query: 1199 KVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDI 1258
            KVL+++NSED  LIK+LLR TRRPE+GDKFSSRHGQKGV GLIV QEDMPF++ GICPDI
Sbjct: 875  KVLLTNNSEDNHLIKILLRTTRRPEVGDKFSSRHGQKGVCGLIVRQEDMPFSDIGICPDI 934

Query: 1259 IMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKD 1318
            IMNPHG+PSRMTVGKL+E L+GKAG + G +  GTAFGG K+VD+ + L+ HG+NY GKD
Sbjct: 935  IMNPHGFPSRMTVGKLMEFLSGKAGALIGKFHYGTAFGGDKVVDMSKILVEHGFNYAGKD 994

Query: 1319 IFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
               SGITGE L AYI+ GPVYYQKLKHMV DK+HAR+RGPR VLTRQPT  R +
Sbjct: 995  FVTSGITGEPLSAYIFFGPVYYQKLKHMVMDKMHARARGPRAVLTRQPTEGRSR 1048



 Score =  243 bits (620), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 118/205 (57%), Positives = 151/205 (73%), Gaps = 4/205 (1%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVNHM 192
           +D  DY+ N  ++   Q  A ++ DV    + K+      + D  IPK +A Q+D+V   
Sbjct: 359 VDDKDYYGNKRLELAGQLLALLFEDV----FKKFNTELKKVTDLTIPKQRATQYDVVKKF 414

Query: 193 RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVS 252
           R   I++ LT AI TGNWT++RFKM+R GVTQVLSRLSYIS LGMMTRI+SQFEKTRKVS
Sbjct: 415 RPQIISDGLTHAISTGNWTVKRFKMDRGGVTQVLSRLSYISALGMMTRISSQFEKTRKVS 474

Query: 253 GPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMF 312
           GPRSLQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT+++E N+ ++ +N G+E I + 
Sbjct: 475 GPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDDEESNIARLAFNFGVEDINVL 534

Query: 313 NGEELSSPGVYLVFVNGILAGITCH 337
           + E+L+    YLVF+NG+L G+T H
Sbjct: 535 SAEDLTRDESYLVFLNGLLLGVTIH 559



 Score =  235 bits (600), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 173/483 (35%), Positives = 243/483 (50%), Gaps = 104/483 (21%)

Query: 424 VTMHSQRTSPLLSCKKLRQKRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLA 483
           +T  +Q    + S  +L ++ +   +K+ VD+AR+ L+S  +AH+PV    F+ K++YLA
Sbjct: 284 ITTQNQALDFVGSRVRLAKRAWGGARKSKVDEARELLASIILAHVPVHKYNFRPKSLYLA 343

Query: 484 VMIRRMVLALSDPDMLDDRDYYGNKRLELAGSLLSLMFE--------------------- 522
           +M+RR++LAL++   +DD+DYYGNKRLELAG LL+L+FE                     
Sbjct: 344 LMVRRVILALNEALPVDDKDYYGNKRLELAGQLLALLFEDVFKKFNTELKKVTDLTIPKQ 403

Query: 523 -----DVFKRFNSELKETNLSGVVNLVSGWW----FELKYGNKIYIRSPSRKLLAAGF-- 571
                DV K+F  ++    L+  ++  +G W    F++  G    + S    + A G   
Sbjct: 404 RATQYDVVKKFRPQIISDGLTHAIS--TGNWTVKRFKMDRGGVTQVLSRLSYISALGMMT 461

Query: 572 ------------SGPHSGRVRLMPEGPTILLNSCLRSG---GKAQHEALYNAV--QRHAT 614
                       SGP S    L P    +L  S    G   G  ++ AL   +      +
Sbjct: 462 RISSQFEKTRKVSGPRS----LQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDDEES 517

Query: 615 KCCTLNFLFFLGGGGILPS--IQRQTTCLLTL------------ILFSLNGDGKRGARNS 660
               L F F +    +L +  + R  + L+ L            IL       +R  R S
Sbjct: 518 NIARLAFNFGVEDINVLSAEDLTRDESYLVFLNGLLLGVTIHPTILVRAFRMLRRDGRLS 577

Query: 661 QQYCDCPDG-------YSSG---CQPR-------PTFLNMH-QFLGFK--RFDDFLYEGK 700
                CP+         S G   C+P        P   N H + L  K  RFDDFL  G 
Sbjct: 578 HFLSICPNDRQRCVYIASDGGRVCRPYIIVDKNGPKVTNTHLERLAQKVLRFDDFLKLGL 637

Query: 701 IEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPY 760
           IEYLDVNE N ++IA+ ES I+P  TTHLEI PFT+LGVCAGI              +PY
Sbjct: 638 IEYLDVNEENGANIAMYESEIKP-YTTHLEIEPFTILGVCAGI--------------IPY 682

Query: 761 PHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLP 820
           PHHNQ+PRNTYQCAMGKQA+G I  NQ  R DTL+Y L+Y QRPMV+++TI + +FH +P
Sbjct: 683 PHHNQSPRNTYQCAMGKQAIGTIAANQYVRFDTLLYTLLYPQRPMVQTRTIELIDFHNMP 742

Query: 821 AGK 823
           AG+
Sbjct: 743 AGQ 745



 Score = 93.6 bits (231), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 41/62 (66%), Positives = 52/62 (83%)

Query: 111 EIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIH 170
           E++DKW+LV +FLK KGLVK HIDSF+YF+NVEI+K++QAN  I SD DP FYL+Y +I 
Sbjct: 27  ELKDKWQLVPAFLKVKGLVKQHIDSFNYFLNVEIRKIVQANDRITSDADPTFYLRYTNIQ 86

Query: 171 VG 172
           VG
Sbjct: 87  VG 88



 Score = 90.5 bits (223), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 49/112 (43%), Positives = 65/112 (58%), Gaps = 14/112 (12%)

Query: 303 NIGIEHIAMFNGEELSS--PGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQ--TTP 358
           N+ I  I   N    S   P  YL + N           +V  P  EE ++Y       P
Sbjct: 57  NVEIRKIVQANDRITSDADPTFYLRYTN----------IQVGAPTAEEYYSYATSPPIAP 106

Query: 359 HECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
            +CRLRD+TY+APITV++EY RGSQ++VR +L IGRMPIML+SS C+L  K+
Sbjct: 107 QQCRLRDMTYAAPITVNVEYMRGSQKIVRDNLFIGRMPIMLRSSNCILHGKS 158


>gi|365986765|ref|XP_003670214.1| hypothetical protein NDAI_0E01550 [Naumovozyma dairenensis CBS 421]
 gi|343768984|emb|CCD24971.1| hypothetical protein NDAI_0E01550 [Naumovozyma dairenensis CBS 421]
          Length = 1154

 Score =  335 bits (860), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 155/264 (58%), Positives = 205/264 (77%), Gaps = 5/264 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ  RIDTL+Y ++Y Q+PMV++KTI + +
Sbjct: 692  GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMIYPQQPMVKTKTIELID 751

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+AVMSYSGYDIEDAL++NKAS+DRGFGRC   R +  +LK+YPN T D 
Sbjct: 752  YDKLPAGQNATVAVMSYSGYDIEDALVINKASIDRGFGRCETRRKTTTILKRYPNHTQDI 811

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPE--- 1089
            I G  ++ +   P+++H+AL  DG+   G ++   Q+ +NK++PT   S ++ A PE   
Sbjct: 812  ISGMRVD-ENGDPIWQHKALGPDGLGEVGMKLDSGQIYINKAVPTNPTSDLN-AAPEQSQ 869

Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
            Y++ PV Y+   PS++++V++S +  D  LIK+LLRQ RRPE+GDKFSSRHGQKGV G+I
Sbjct: 870  YRDTPVMYRAPEPSHIDQVMMSVSDNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCGII 929

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
            V+QEDMPFN+ GI PDIIMNPHG 
Sbjct: 930  VQQEDMPFNDQGIVPDIIMNPHGF 953



 Score =  279 bits (714), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 124/193 (64%), Positives = 161/193 (83%)

Query: 1180 TEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1239
            ++Y++ PV Y+   PS++++V++S +  D  LIK+LLRQ RRPE+GDKFSSRHGQKGV G
Sbjct: 868  SQYRDTPVMYRAPEPSHIDQVMMSVSDNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCG 927

Query: 1240 LIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTK 1299
            +IV+QEDMPFN+ GI PDIIMNPHG+PSRMTVGK+IEL++GKAG++ G+ + GT FGG+K
Sbjct: 928  IIVQQEDMPFNDQGIVPDIIMNPHGFPSRMTVGKMIELVSGKAGVLNGSLEYGTCFGGSK 987

Query: 1300 LVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPR 1359
            L D+ + L+  G+NY GKD+ YSGITGE L+AYI+ GP+YYQKLKHMV DK+HAR+RGPR
Sbjct: 988  LEDMSKILVDQGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPR 1047

Query: 1360 VVLTRQPTGRRWK 1372
             VLTRQPT  R +
Sbjct: 1048 AVLTRQPTEGRSR 1060



 Score =  188 bits (477), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 102/207 (49%), Positives = 143/207 (69%), Gaps = 11/207 (5%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPK-IKAAQFD--IV 189
           +D  DY  N  ++   Q  + ++ D+    + K+        DK++ K  +A ++D  + 
Sbjct: 372 VDDRDYVGNKRLELAGQMVSLLFEDL----FKKFNSDFKATIDKVLEKPNRAMEYDALLS 427

Query: 190 NHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
            ++  + IT+ L  AI TGNW+++RFKMER GVT VLSRLSYIS LGMMTRI+SQFEK+R
Sbjct: 428 INVHSNNITSGLNRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSR 487

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHI 309
           KVSGPR+LQ SQ+GMLC +DTPEGEACGLVKNLALMTHIT++++E+ + ++ Y +G+E I
Sbjct: 488 KVSGPRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITSDDEEEPIKRVCYVLGVEDI 547

Query: 310 AMFNGEELS-SPGVYLVFVNGILAGIT 335
           ++ +   L  + GVYL   NG L G T
Sbjct: 548 SLIDSASLHLNFGVYL---NGTLIGTT 571



 Score =  158 bits (400), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 76/132 (57%), Positives = 94/132 (71%), Gaps = 15/132 (11%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKR 751
           FDDFL  G +EYLDVNE NDS IA+ E  I    +TH+EI PFT+LG  AG         
Sbjct: 643 FDDFLKLGLVEYLDVNEENDSFIALYEKDINVA-STHMEIEPFTVLGAVAG--------- 692

Query: 752 FHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTI 811
                L+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ  RIDTL+Y ++Y Q+PMV++KTI
Sbjct: 693 -----LIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMIYPQQPMVKTKTI 747

Query: 812 RITNFHKLPAGK 823
            + ++ KLPAG+
Sbjct: 748 ELIDYDKLPAGQ 759



 Score =  101 bits (251), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 47/115 (40%), Positives = 81/115 (70%), Gaps = 2/115 (1%)

Query: 421 TSSVTMHSQRTSPLLSCKKLRQKRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAM 480
            + + +++Q+ +      K++  R Q  K + + +  + +++T +AH+ V  + F+ KA+
Sbjct: 296 AAKLNLYTQQQALEFIGAKVKTMRRQ--KLSILQEGIEAIATTVVAHLTVEALDFREKAL 353

Query: 481 YLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELKET 535
           Y+A+M RR+V+A+ +P M+DDRDY GNKRLELAG ++SL+FED+FK+FNS+ K T
Sbjct: 354 YMAMMTRRVVMAIHNPKMVDDRDYVGNKRLELAGQMVSLLFEDLFKKFNSDFKAT 408



 Score = 86.7 bits (213), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 38/59 (64%), Positives = 50/59 (84%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           DKW L+ +FLK KGLVK H+DSF+YF++V++KK+++AN  I SDVDP FYLKY+DI VG
Sbjct: 49  DKWHLLPAFLKVKGLVKQHLDSFNYFVDVDLKKIIKANQLILSDVDPEFYLKYVDIRVG 107



 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/56 (66%), Positives = 43/56 (76%)

Query: 356 TTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKTE 411
           T PHECRLRD+TYSAPI VDIEYTRG   ++  D+ IGRMPIML+S+KC L    E
Sbjct: 119 TPPHECRLRDMTYSAPIYVDIEYTRGRNIIMHKDVEIGRMPIMLRSNKCTLYGADE 174


>gi|448100132|ref|XP_004199280.1| Piso0_002709 [Millerozyma farinosa CBS 7064]
 gi|359380702|emb|CCE82943.1| Piso0_002709 [Millerozyma farinosa CBS 7064]
          Length = 1158

 Score =  335 bits (860), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 158/269 (58%), Positives = 204/269 (75%), Gaps = 10/269 (3%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G IGYNQ  RIDTL+Y +VY Q+PMV++KTI + +
Sbjct: 694  GLIPYPHHNQSPRNTYQCAMGKQAIGAIGYNQFRRIDTLLYLMVYPQQPMVKTKTIELID 753

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+AVMSYSGYDIEDAL++NKAS+DRGFGRC V R +   LK+YPN T D 
Sbjct: 754  YDKLPAGQNATVAVMSYSGYDIEDALVLNKASIDRGFGRCQVLRKNTISLKRYPNHTKDI 813

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPE--- 1089
            + G  ++ +   P++ H +L  DG+   G Q+   QV VNK +PT +  ++ + +P+   
Sbjct: 814  VAGMRVD-ENGDPIFSHSSLGTDGLGEVGMQVENGQVYVNKCVPTNAGESV-LGSPDQHV 871

Query: 1090 -----YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKG 1144
                 ++E P  YKG  PSY+++V++S    D  LIK+LLRQTRRPE+GDKFSSRHGQKG
Sbjct: 872  QSAESHRETPAYYKGPEPSYVDQVMMSVGDNDQALIKVLLRQTRRPELGDKFSSRHGQKG 931

Query: 1145 VIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            V G+IV+QED+PFN+ GI PDIIMNPHG 
Sbjct: 932  VCGIIVQQEDLPFNDDGISPDIIMNPHGF 960



 Score =  282 bits (721), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 125/191 (65%), Positives = 160/191 (83%)

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
            ++E P  YKG  PSY+++V++S    D  LIK+LLRQTRRPE+GDKFSSRHGQKGV G+I
Sbjct: 877  HRETPAYYKGPEPSYVDQVMMSVGDNDQALIKVLLRQTRRPELGDKFSSRHGQKGVCGII 936

Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
            V+QED+PFN+ GI PDIIMNPHG+PSRMTVGK++EL++GKAG++ G+ + GT FGG+KL 
Sbjct: 937  VQQEDLPFNDDGISPDIIMNPHGFPSRMTVGKMLELISGKAGVLNGSLEYGTCFGGSKLE 996

Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
            D+ + L+ HG+NY GKD+ YSGITGE ++AYI+ GP+YYQKLKHMV DK+HAR+RGPR V
Sbjct: 997  DMSKILVDHGFNYSGKDMLYSGITGECMQAYIFFGPIYYQKLKHMVLDKMHARARGPRAV 1056

Query: 1362 LTRQPTGRRWK 1372
            LTRQPT  R +
Sbjct: 1057 LTRQPTEGRSR 1067



 Score =  186 bits (472), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 125/338 (36%), Positives = 189/338 (55%), Gaps = 31/338 (9%)

Query: 20  LKHHPIGTPGPAYIFFLLEGLQAIL------------FLPLFKQVDFGDS---KVVSLRE 64
           LKH+ I    P  I     G+ + L            +  LF  V+F ++   +V++ ++
Sbjct: 241 LKHNSIAEDVPIVIVLKAAGITSDLEILQLVCGQDPNYQDLFA-VNFEEAARLEVLTQQQ 299

Query: 65  LLSHVTYQKRLYRLTVQPNWLGTVKAVHGTYLTMVTDETSKLKDSPEIRDKWKLVLSFLK 124
            L+++  + +  R    P      + +     T++   T       + R+K  L ++ + 
Sbjct: 300 ALNYIGKRVKTIRRAGAPKLSQLQEGIEAVATTIIAHITVS---DLQFREK-ALYIATMT 355

Query: 125 EKGLVKPH----IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPK 180
            + L+  H    +D  DY  N  ++   Q  + ++ D   LF     D    I DK++ K
Sbjct: 356 RRVLMTMHNPKMVDDRDYVGNKRLELAGQLLSLLFED---LFKKFNSDFKANI-DKVLKK 411

Query: 181 -IKAAQFD--IVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGM 237
             + ++FD  +  ++  + IT  +  AI TGNW+++RFKMER GVT VLSRLSYIS LGM
Sbjct: 412 PSRTSEFDALLSINIHSNNITMGMNRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGM 471

Query: 238 MTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNM 297
           MTRI+SQFEK+RKVSGPR+LQ SQ+GMLC SDTPEGEACGLVKNLALMTHITT+++E  +
Sbjct: 472 MTRISSQFEKSRKVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTDDEELPV 531

Query: 298 LKIMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAGIT 335
             + + +G E+I   +   L +   + V++NG L G T
Sbjct: 532 KNLCFTLGCENILEIDSATLHAVTNFGVYLNGTLIGAT 569



 Score =  158 bits (400), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 78/134 (58%), Positives = 95/134 (70%), Gaps = 16/134 (11%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVT--THLEIAPFTLLGVCAGIELLQYN 749
           FDDFL  G +EYLDVNE NDS IA+ E  ++      THLEI PFT+LG  AG       
Sbjct: 642 FDDFLKHGLVEYLDVNEENDSLIALYEEDLKNTHQEFTHLEIEPFTVLGAVAG------- 694

Query: 750 KRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESK 809
                  L+PYPHHNQ+PRNTYQCAMGKQA+G IGYNQ  RIDTL+Y +VY Q+PMV++K
Sbjct: 695 -------LIPYPHHNQSPRNTYQCAMGKQAIGAIGYNQFRRIDTLLYLMVYPQQPMVKTK 747

Query: 810 TIRITNFHKLPAGK 823
           TI + ++ KLPAG+
Sbjct: 748 TIELIDYDKLPAGQ 761



 Score =  101 bits (252), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 45/91 (49%), Positives = 69/91 (75%)

Query: 443 KRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDR 502
           +R    K + + +  + +++T IAHI V +++F+ KA+Y+A M RR+++ + +P M+DDR
Sbjct: 312 RRAGAPKLSQLQEGIEAVATTIIAHITVSDLQFREKALYIATMTRRVLMTMHNPKMVDDR 371

Query: 503 DYYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
           DY GNKRLELAG LLSL+FED+FK+FNS+ K
Sbjct: 372 DYVGNKRLELAGQLLSLLFEDLFKKFNSDFK 402



 Score = 87.4 bits (215), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 38/59 (64%), Positives = 50/59 (84%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           DKW L+ +FLK KGLVK H+DSF+YF++V++KK+++AN  + SDVDP FYLKYLDI VG
Sbjct: 40  DKWNLLPAFLKVKGLVKQHLDSFNYFVDVDLKKIIKANELVLSDVDPEFYLKYLDIRVG 98



 Score = 87.0 bits (214), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 61/170 (35%), Positives = 86/170 (50%), Gaps = 32/170 (18%)

Query: 247 KTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGI 306
           K RK++ P +    +W +L P+     +  GLVK      H+ + N         Y + +
Sbjct: 27  KGRKLTDPINTTEDKWNLL-PAFL---KVKGLVKQ-----HLDSFN---------YFVDV 68

Query: 307 EHIAMFNGEELS----SPGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHECR 362
           +   +    EL      P  YL +++     I   HK    P  +E         PHECR
Sbjct: 69  DLKKIIKANELVLSDVDPEFYLKYLD-----IRVGHKSSSPPGTKEV-----NLAPHECR 118

Query: 363 LRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKTEY 412
           LRDLTYSAPI VD+EYTRG + ++  DL IGRMPIML+S+KC+L    E+
Sbjct: 119 LRDLTYSAPIYVDVEYTRGRKIIMHKDLEIGRMPIMLRSNKCILDGIDEH 168


>gi|183232813|ref|XP_654890.2| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide
            [Entamoeba histolytica HM-1:IMSS]
 gi|169801863|gb|EAL49502.2| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide,
            putative [Entamoeba histolytica HM-1:IMSS]
          Length = 1122

 Score =  335 bits (859), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 153/264 (57%), Positives = 202/264 (76%), Gaps = 6/264 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G IGYNQ  R+DTL+Y L Y Q PMV++KTI + N
Sbjct: 665  GLIPYPHHNQSPRNTYQCAMGKQAIGTIGYNQFKRVDTLLYLLYYPQIPMVKTKTIDMIN 724

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNA +AVMSYSGYDIEDA I+NKAS+DRG+GRC VYR ++CV+K+Y N   DR
Sbjct: 725  FDKLPAGQNAMVAVMSYSGYDIEDASILNKASIDRGYGRCFVYRKAECVIKKYKNGACDR 784

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT---PE 1089
            ++ P    D  + + ++++LD DG+ +PG  +    + +NK +P  ++  ++  T    E
Sbjct: 785  VVCP---TDEERELPKYKSLDFDGVCSPGSILNPGSIYLNKQVPLNTIGTLTTDTIKDDE 841

Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
            Y+   ++YKG VPSY+++VL++SN E+   +K+ LR +RRPE+GDKFSSRHGQKGV GLI
Sbjct: 842  YRREVLTYKGPVPSYVDQVLITSNEEEPLKVKISLRTSRRPELGDKFSSRHGQKGVTGLI 901

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
            V QEDMPF  +GICPD+IMNPHG 
Sbjct: 902  VNQEDMPFTNTGICPDVIMNPHGF 925



 Score =  278 bits (712), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 140/242 (57%), Positives = 178/242 (73%), Gaps = 20/242 (8%)

Query: 1151 EQEDMPFNES----GIC-PDIIMNPH-------------GLKGCDRI--TEYKEVPVSYK 1190
            E+ ++P  +S    G+C P  I+NP              G    D I   EY+   ++YK
Sbjct: 791  EERELPKYKSLDFDGVCSPGSILNPGSIYLNKQVPLNTIGTLTTDTIKDDEYRREVLTYK 850

Query: 1191 GSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFN 1250
            G VPSY+++VL++SN E+   +K+ LR +RRPE+GDKFSSRHGQKGV GLIV QEDMPF 
Sbjct: 851  GPVPSYVDQVLITSNEEEPLKVKISLRTSRRPELGDKFSSRHGQKGVTGLIVNQEDMPFT 910

Query: 1251 ESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRH 1310
             +GICPD+IMNPHG+PSRMTVGKL+EL++GKAGLM+G++K GTAFGG KL D+ + LI  
Sbjct: 911  NTGICPDVIMNPHGFPSRMTVGKLLELVSGKAGLMDGSFKYGTAFGGDKLDDMSKILIEA 970

Query: 1311 GYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRR 1370
            GY+Y GK+  YSGITG+AL AYI+ GPVYYQKLKHMV DK+HAR+RGP+  LTRQPT  R
Sbjct: 971  GYSYDGKEELYSGITGKALHAYIFIGPVYYQKLKHMVLDKMHARARGPKSSLTRQPTEGR 1030

Query: 1371 WK 1372
             +
Sbjct: 1031 SR 1032



 Score =  209 bits (533), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 98/203 (48%), Positives = 142/203 (69%), Gaps = 3/203 (1%)

Query: 132 HIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVNH 191
            +D  DY+ N  ++   Q  + ++ D   LF     D+       +  K ++  FDI+  
Sbjct: 344 ELDDKDYYGNKRMELAGQLMSLLFED---LFKQFNTDLQNAANKGLTKKSRSETFDIIKC 400

Query: 192 MRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKV 251
           +    IT  L  ++ TGNW ++RF M+R G+TQVLSRLSYIS LGMMTR+NS FEKTRKV
Sbjct: 401 ISPHRITQGLIHSLSTGNWVLKRFNMDRAGITQVLSRLSYISALGMMTRLNSHFEKTRKV 460

Query: 252 SGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAM 311
           SGPRSLQGSQWGM+CPSDTPEGE+CGLVKN +L+T +TT+++++ ++ +++N+G+E   +
Sbjct: 461 SGPRSLQGSQWGMVCPSDTPEGESCGLVKNFSLLTEVTTDSNDEAIVTMLFNLGVEDANL 520

Query: 312 FNGEELSSPGVYLVFVNGILAGI 334
            +G+E+++P  YLVF+NG L GI
Sbjct: 521 ISGDEVNAPSSYLVFLNGQLLGI 543



 Score =  161 bits (407), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 81/136 (59%), Positives = 98/136 (72%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           GFK  +D L EG IEYLDVNE N+S+IA++E+ I    TTHLEI P ++LGV AG     
Sbjct: 612 GFKSIEDCLKEGLIEYLDVNEENNSYIAINENEINEH-TTHLEIDPLSILGVVAG----- 665

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQA+G IGYNQ  R+DTL+Y L Y Q PMV+
Sbjct: 666 ---------LIPYPHHNQSPRNTYQCAMGKQAIGTIGYNQFKRVDTLLYLLYYPQIPMVK 716

Query: 808 SKTIRITNFHKLPAGK 823
           +KTI + NF KLPAG+
Sbjct: 717 TKTIDMINFDKLPAGQ 732



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 42/103 (40%), Positives = 67/103 (65%), Gaps = 1/103 (0%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           K+  +++ARD L++  + HI V    FK K +Y+A+M+   +L   +   LDD+DYYGNK
Sbjct: 296 KRPKIEEARDVLANLVLPHIEVNRYNFKTKIIYIALMVN-WILKADETGELDDKDYYGNK 354

Query: 509 RLELAGSLLSLMFEDVFKRFNSELKETNLSGVVNLVSGWWFEL 551
           R+ELAG L+SL+FED+FK+FN++L+     G+        F++
Sbjct: 355 RMELAGQLMSLLFEDLFKQFNTDLQNAANKGLTKKSRSETFDI 397



 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/60 (56%), Positives = 48/60 (80%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           + DKW+L+ +F+K +GLV+ HIDSF+YFI+ EIK++++AN  I  D DP FYLKYLD+ V
Sbjct: 20  VEDKWRLIPAFVKARGLVRQHIDSFNYFIDEEIKQIVKANDKITCDADPRFYLKYLDVKV 79



 Score = 68.9 bits (167), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/61 (52%), Positives = 44/61 (72%), Gaps = 2/61 (3%)

Query: 351 NYTRQT-TPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNK 409
           +Y +++ TP ECRLRD++Y+API  +I+YTR   ++ R  + IG MPIMLQS  CVL N 
Sbjct: 87  DYKKESITPQECRLRDISYTAPILANIQYTR-DNKIFRKTVTIGYMPIMLQSKHCVLYNN 145

Query: 410 T 410
           T
Sbjct: 146 T 146


>gi|449708606|gb|EMD48033.1| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide,
            putative [Entamoeba histolytica KU27]
          Length = 1141

 Score =  335 bits (859), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 153/264 (57%), Positives = 202/264 (76%), Gaps = 6/264 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G IGYNQ  R+DTL+Y L Y Q PMV++KTI + N
Sbjct: 684  GLIPYPHHNQSPRNTYQCAMGKQAIGTIGYNQFKRVDTLLYLLYYPQIPMVKTKTIDMIN 743

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNA +AVMSYSGYDIEDA I+NKAS+DRG+GRC VYR ++CV+K+Y N   DR
Sbjct: 744  FDKLPAGQNAMVAVMSYSGYDIEDASILNKASIDRGYGRCFVYRKAECVIKKYKNGACDR 803

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT---PE 1089
            ++ P    D  + + ++++LD DG+ +PG  +    + +NK +P  ++  ++  T    E
Sbjct: 804  VVCP---TDEERELPKYKSLDFDGVCSPGSILNPGSIYLNKQVPLNTIGTLTTDTIKDDE 860

Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
            Y+   ++YKG VPSY+++VL++SN E+   +K+ LR +RRPE+GDKFSSRHGQKGV GLI
Sbjct: 861  YRREVLTYKGPVPSYVDQVLITSNEEEPLKVKISLRTSRRPELGDKFSSRHGQKGVTGLI 920

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
            V QEDMPF  +GICPD+IMNPHG 
Sbjct: 921  VNQEDMPFTNTGICPDVIMNPHGF 944



 Score =  279 bits (714), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 140/242 (57%), Positives = 178/242 (73%), Gaps = 20/242 (8%)

Query: 1151 EQEDMPFNES----GIC-PDIIMNPH-------------GLKGCDRIT--EYKEVPVSYK 1190
            E+ ++P  +S    G+C P  I+NP              G    D I   EY+   ++YK
Sbjct: 810  EERELPKYKSLDFDGVCSPGSILNPGSIYLNKQVPLNTIGTLTTDTIKDDEYRREVLTYK 869

Query: 1191 GSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFN 1250
            G VPSY+++VL++SN E+   +K+ LR +RRPE+GDKFSSRHGQKGV GLIV QEDMPF 
Sbjct: 870  GPVPSYVDQVLITSNEEEPLKVKISLRTSRRPELGDKFSSRHGQKGVTGLIVNQEDMPFT 929

Query: 1251 ESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRH 1310
             +GICPD+IMNPHG+PSRMTVGKL+EL++GKAGLM+G++K GTAFGG KL D+ + LI  
Sbjct: 930  NTGICPDVIMNPHGFPSRMTVGKLLELVSGKAGLMDGSFKYGTAFGGDKLDDISKILIEA 989

Query: 1311 GYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRR 1370
            GY+Y GK+  YSGITG+AL AYI+ GPVYYQKLKHMV DK+HAR+RGP+  LTRQPT  R
Sbjct: 990  GYSYDGKEELYSGITGKALHAYIFIGPVYYQKLKHMVLDKMHARARGPKSSLTRQPTEGR 1049

Query: 1371 WK 1372
             +
Sbjct: 1050 SR 1051



 Score =  209 bits (533), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 98/203 (48%), Positives = 142/203 (69%), Gaps = 3/203 (1%)

Query: 132 HIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVNH 191
            +D  DY+ N  ++   Q  + ++ D   LF     D+       +  K ++  FDI+  
Sbjct: 363 ELDDKDYYGNKRMELAGQLMSLLFED---LFKQFNTDLQNAANKGLTKKSRSETFDIIKC 419

Query: 192 MRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKV 251
           +    IT  L  ++ TGNW ++RF M+R G+TQVLSRLSYIS LGMMTR+NS FEKTRKV
Sbjct: 420 ISPHRITQGLIHSLSTGNWVLKRFNMDRAGITQVLSRLSYISALGMMTRLNSHFEKTRKV 479

Query: 252 SGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAM 311
           SGPRSLQGSQWGM+CPSDTPEGE+CGLVKN +L+T +TT+++++ ++ +++N+G+E   +
Sbjct: 480 SGPRSLQGSQWGMVCPSDTPEGESCGLVKNFSLLTEVTTDSNDEAIVTMLFNLGVEDANL 539

Query: 312 FNGEELSSPGVYLVFVNGILAGI 334
            +G+E+++P  YLVF+NG L GI
Sbjct: 540 ISGDEVNAPSSYLVFLNGQLLGI 562



 Score =  161 bits (407), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 81/136 (59%), Positives = 98/136 (72%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           GFK  +D L EG IEYLDVNE N+S+IA++E+ I    TTHLEI P ++LGV AG     
Sbjct: 631 GFKSIEDCLKEGLIEYLDVNEENNSYIAINENEINEH-TTHLEIDPLSILGVVAG----- 684

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQA+G IGYNQ  R+DTL+Y L Y Q PMV+
Sbjct: 685 ---------LIPYPHHNQSPRNTYQCAMGKQAIGTIGYNQFKRVDTLLYLLYYPQIPMVK 735

Query: 808 SKTIRITNFHKLPAGK 823
           +KTI + NF KLPAG+
Sbjct: 736 TKTIDMINFDKLPAGQ 751



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 42/103 (40%), Positives = 67/103 (65%), Gaps = 1/103 (0%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           K+  +++ARD L++  + HI V    FK K +Y+A+M+   +L   +   LDD+DYYGNK
Sbjct: 315 KRPKIEEARDVLANLVLPHIEVNRYNFKTKIIYIALMVN-WILKADETGELDDKDYYGNK 373

Query: 509 RLELAGSLLSLMFEDVFKRFNSELKETNLSGVVNLVSGWWFEL 551
           R+ELAG L+SL+FED+FK+FN++L+     G+        F++
Sbjct: 374 RMELAGQLMSLLFEDLFKQFNTDLQNAANKGLTKKSRSETFDI 416



 Score = 82.0 bits (201), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/60 (56%), Positives = 48/60 (80%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           + DKW+L+ +F+K +GLV+ HIDSF+YFI+ EIK++++AN  I  D DP FYLKYLD+ V
Sbjct: 39  VEDKWRLIPAFVKARGLVRQHIDSFNYFIDEEIKQIVKANDKITCDADPRFYLKYLDVKV 98



 Score = 68.9 bits (167), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/61 (52%), Positives = 44/61 (72%), Gaps = 2/61 (3%)

Query: 351 NYTRQT-TPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNK 409
           +Y +++ TP ECRLRD++Y+API  +I+YTR   ++ R  + IG MPIMLQS  CVL N 
Sbjct: 106 DYKKESITPQECRLRDISYTAPILANIQYTR-DNKIFRKTVTIGYMPIMLQSKHCVLYNN 164

Query: 410 T 410
           T
Sbjct: 165 T 165


>gi|407043800|gb|EKE42160.1| DNA-directed RNA polymerase, beta subunit domain containing protein
            [Entamoeba nuttalli P19]
          Length = 1141

 Score =  335 bits (859), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 153/264 (57%), Positives = 202/264 (76%), Gaps = 6/264 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G IGYNQ  R+DTL+Y L Y Q PMV++KTI + N
Sbjct: 684  GLIPYPHHNQSPRNTYQCAMGKQAIGTIGYNQFKRVDTLLYLLYYPQIPMVKTKTIDMIN 743

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNA +AVMSYSGYDIEDA I+NKAS+DRG+GRC VYR ++CV+K+Y N   DR
Sbjct: 744  FDKLPAGQNAMVAVMSYSGYDIEDASILNKASIDRGYGRCFVYRKAECVIKKYKNGACDR 803

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT---PE 1089
            ++ P    D  + + ++++LD DG+ +PG  +    + +NK +P  ++  ++  T    E
Sbjct: 804  VVCP---TDEERELPKYKSLDFDGVCSPGSILNPGSIYLNKQVPLNTIGTLTTDTIKDDE 860

Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
            Y+   ++YKG VPSY+++VL++SN E+   +K+ LR +RRPE+GDKFSSRHGQKGV GLI
Sbjct: 861  YRREVLTYKGPVPSYVDQVLITSNEEEPLKVKISLRTSRRPELGDKFSSRHGQKGVTGLI 920

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
            V QEDMPF  +GICPD+IMNPHG 
Sbjct: 921  VNQEDMPFTNTGICPDVIMNPHGF 944



 Score =  279 bits (713), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 140/242 (57%), Positives = 178/242 (73%), Gaps = 20/242 (8%)

Query: 1151 EQEDMPFNES----GIC-PDIIMNPH-------------GLKGCDRIT--EYKEVPVSYK 1190
            E+ ++P  +S    G+C P  I+NP              G    D I   EY+   ++YK
Sbjct: 810  EERELPKYKSLDFDGVCSPGSILNPGSIYLNKQVPLNTIGTLTTDTIKDDEYRREVLTYK 869

Query: 1191 GSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFN 1250
            G VPSY+++VL++SN E+   +K+ LR +RRPE+GDKFSSRHGQKGV GLIV QEDMPF 
Sbjct: 870  GPVPSYVDQVLITSNEEEPLKVKISLRTSRRPELGDKFSSRHGQKGVTGLIVNQEDMPFT 929

Query: 1251 ESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRH 1310
             +GICPD+IMNPHG+PSRMTVGKL+EL++GKAGLM+G++K GTAFGG KL D+ + LI  
Sbjct: 930  NTGICPDVIMNPHGFPSRMTVGKLLELVSGKAGLMDGSFKYGTAFGGDKLDDMSKILIEA 989

Query: 1311 GYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRR 1370
            GY+Y GK+  YSGITG+AL AYI+ GPVYYQKLKHMV DK+HAR+RGP+  LTRQPT  R
Sbjct: 990  GYSYDGKEELYSGITGKALHAYIFIGPVYYQKLKHMVLDKMHARARGPKSSLTRQPTEGR 1049

Query: 1371 WK 1372
             +
Sbjct: 1050 SR 1051



 Score =  209 bits (533), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 98/203 (48%), Positives = 142/203 (69%), Gaps = 3/203 (1%)

Query: 132 HIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVNH 191
            +D  DY+ N  ++   Q  + ++ D   LF     D+       +  K ++  FDI+  
Sbjct: 363 ELDDKDYYGNKRMELAGQLMSLLFED---LFKQFNTDLQNAANKGLTKKSRSETFDIIKC 419

Query: 192 MRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKV 251
           +    IT  L  ++ TGNW ++RF M+R G+TQVLSRLSYIS LGMMTR+NS FEKTRKV
Sbjct: 420 ISPHRITQGLIHSLSTGNWVLKRFNMDRAGITQVLSRLSYISALGMMTRLNSHFEKTRKV 479

Query: 252 SGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAM 311
           SGPRSLQGSQWGM+CPSDTPEGE+CGLVKN +L+T +TT+++++ ++ +++N+G+E   +
Sbjct: 480 SGPRSLQGSQWGMVCPSDTPEGESCGLVKNFSLLTEVTTDSNDQAIVTMLFNLGVEDANL 539

Query: 312 FNGEELSSPGVYLVFVNGILAGI 334
            +G+E+++P  YLVF+NG L GI
Sbjct: 540 ISGDEVNAPSSYLVFLNGQLLGI 562



 Score =  161 bits (407), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 81/136 (59%), Positives = 98/136 (72%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           GFK  +D L EG IEYLDVNE N+S+IA++E+ I    TTHLEI P ++LGV AG     
Sbjct: 631 GFKSIEDCLKEGLIEYLDVNEENNSYIAINENEINEH-TTHLEIDPLSILGVVAG----- 684

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQA+G IGYNQ  R+DTL+Y L Y Q PMV+
Sbjct: 685 ---------LIPYPHHNQSPRNTYQCAMGKQAIGTIGYNQFKRVDTLLYLLYYPQIPMVK 735

Query: 808 SKTIRITNFHKLPAGK 823
           +KTI + NF KLPAG+
Sbjct: 736 TKTIDMINFDKLPAGQ 751



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 42/103 (40%), Positives = 67/103 (65%), Gaps = 1/103 (0%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           K+  +++ARD L++  + HI V    FK K +Y+A+M+   +L   +   LDD+DYYGNK
Sbjct: 315 KRPKIEEARDVLANLVLPHIEVNRYNFKTKIIYIALMVN-WILKADETGELDDKDYYGNK 373

Query: 509 RLELAGSLLSLMFEDVFKRFNSELKETNLSGVVNLVSGWWFEL 551
           R+ELAG L+SL+FED+FK+FN++L+     G+        F++
Sbjct: 374 RMELAGQLMSLLFEDLFKQFNTDLQNAANKGLTKKSRSETFDI 416



 Score = 82.0 bits (201), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/60 (56%), Positives = 48/60 (80%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           + DKW+L+ +F+K +GLV+ HIDSF+YFI+ EIK++++AN  I  D DP FYLKYLD+ V
Sbjct: 39  VEDKWRLIPAFVKARGLVRQHIDSFNYFIDEEIKQIVKANDKITCDADPRFYLKYLDVKV 98



 Score = 68.9 bits (167), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/61 (52%), Positives = 44/61 (72%), Gaps = 2/61 (3%)

Query: 351 NYTRQT-TPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNK 409
           +Y +++ TP ECRLRD++Y+API  +I+YTR   ++ R  + IG MPIMLQS  CVL N 
Sbjct: 106 DYKKESITPQECRLRDISYTAPILANIQYTR-DNKIFRKTVTIGYMPIMLQSKHCVLYNN 164

Query: 410 T 410
           T
Sbjct: 165 T 165


>gi|281207896|gb|EFA82075.1| RNA polymerase III [Polysphondylium pallidum PN500]
          Length = 1139

 Score =  335 bits (859), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 158/265 (59%), Positives = 203/265 (76%), Gaps = 7/265 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
             L+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ +RIDTL+Y LVY QRPM +++T+ + N
Sbjct: 681  ALIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLSRIDTLLYLLVYPQRPMCQTRTLELVN 740

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAG NAT+AVMSYSGYDIEDAL+MNKASLDRGFGRC+V++     +K+Y NQT DR
Sbjct: 741  YVKLPAGHNATVAVMSYSGYDIEDALVMNKASLDRGFGRCIVFKKQVSAVKKYANQTADR 800

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMP--TISVSAISMATPE- 1089
            I+ P  E  +R+P  +   LD+DGI  PGE   + Q+L+NK  P  T+ + A S   P+ 
Sbjct: 801  IIPPNAET-SRQP--KFALLDEDGIAKPGELAQKGQILINKYSPINTVDIVANSDKIPDS 857

Query: 1090 -YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
             YK    +YK   P++++KV++++  +D  LIK+L+R TRRPE+GDKFSSRHGQKGV G+
Sbjct: 858  GYKSSYTAYKYENPAFVDKVMLTTGDDDQLLIKLLMRSTRRPELGDKFSSRHGQKGVCGI 917

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            IV+QEDMPF + GICPDIIMNPHG 
Sbjct: 918  IVKQEDMPFTDLGICPDIIMNPHGF 942



 Score =  261 bits (667), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 121/210 (57%), Positives = 160/210 (76%), Gaps = 8/210 (3%)

Query: 1165 DIIMNPHGLKGCDRITE--YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRP 1222
            DI+ N       D+I +  YK    +YK   P++++KV++++  +D  LIK+L+R TRRP
Sbjct: 846  DIVAN------SDKIPDSGYKSSYTAYKYENPAFVDKVMLTTGDDDQLLIKLLMRSTRRP 899

Query: 1223 EIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKA 1282
            E+GDKFSSRHGQKGV G+IV+QEDMPF + GICPDIIMNPHG+PSRMT+GK+IELLAGKA
Sbjct: 900  ELGDKFSSRHGQKGVCGIIVKQEDMPFTDLGICPDIIMNPHGFPSRMTIGKMIELLAGKA 959

Query: 1283 GLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQK 1342
            G++ G +  GT FGG K+ D+ + LI  G++Y GKD   SG+TGE L+ +I+ GP++YQK
Sbjct: 960  GVLRGGFGYGTCFGGDKVEDISKVLISKGFSYGGKDYVTSGVTGEPLQCFIFFGPIFYQK 1019

Query: 1343 LKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
            LKHMV DK+HAR+RGP V LTRQPT  R +
Sbjct: 1020 LKHMVMDKMHARARGPTVTLTRQPTEGRAR 1049



 Score =  215 bits (548), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 106/202 (52%), Positives = 139/202 (68%), Gaps = 3/202 (1%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVNHM 192
           +D  DY+ N  ++   Q  + ++ D   LF     ++       I+   +A  FD  + +
Sbjct: 361 LDDKDYYGNKRLELSGQLISLLFED---LFKKFLAELKKATDQAILKPNRAMVFDFASII 417

Query: 193 RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVS 252
           R +T+TN    AI +G W ++RFKMER GVTQVLSRLS+IS LGMMTRI SQFEKTRK+S
Sbjct: 418 RTETLTNGFVHAISSGQWNLKRFKMERSGVTQVLSRLSFISALGMMTRIQSQFEKTRKIS 477

Query: 253 GPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMF 312
           GPRSLQ SQWGMLCPSDTPEGEACGLVKN A MTH+TT+  E  +L++ YN+G++ I + 
Sbjct: 478 GPRSLQPSQWGMLCPSDTPEGEACGLVKNFAQMTHVTTDEPEGPLLRLAYNLGVQDILLI 537

Query: 313 NGEELSSPGVYLVFVNGILAGI 334
            GEEL+S   +LVF+NG + GI
Sbjct: 538 TGEELNSRTAFLVFLNGQIIGI 559



 Score =  164 bits (414), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 78/135 (57%), Positives = 96/135 (71%), Gaps = 15/135 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G + FDDF+ EG IEYLDVNE NDS +A +ES +    TTH+EI PFTLLG  +      
Sbjct: 628 GLRTFDDFIREGLIEYLDVNEENDSFLAWNESAVNK-TTTHMEIEPFTLLGCVSA----- 681

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ +RIDTL+Y LVY QRPM +
Sbjct: 682 ---------LIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLSRIDTLLYLLVYPQRPMCQ 732

Query: 808 SKTIRITNFHKLPAG 822
           ++T+ + N+ KLPAG
Sbjct: 733 TRTLELVNYVKLPAG 747



 Score =  103 bits (258), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 51/129 (39%), Positives = 81/129 (62%)

Query: 413 TSSSRRASTSSVTMHSQRTSPLLSCKKLRQKRFQTYKKTPVDDARDFLSSTCIAHIPVIN 472
            SS    +   V   +Q    L +  K  +K +   KK+  ++A+D L+   + H+PV  
Sbjct: 275 ASSLEECNKCKVHTQTQALDYLGARIKSIRKPWGMSKKSKSEEAKDILAGVVLNHVPVRR 334

Query: 473 MRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSEL 532
             F++K +Y+A+MIRR+++A  D   LDD+DYYGNKRLEL+G L+SL+FED+FK+F +EL
Sbjct: 335 YNFRLKVIYVALMIRRIIIATKDRSTLDDKDYYGNKRLELSGQLISLLFEDLFKKFLAEL 394

Query: 533 KETNLSGVV 541
           K+     ++
Sbjct: 395 KKATDQAIL 403



 Score = 85.1 bits (209), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/73 (54%), Positives = 57/73 (78%), Gaps = 1/73 (1%)

Query: 102 ETSKLKDSPE-IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDP 160
           + SKL D  + I +KWKLV +FLK +GLVK HIDSF++FINVE+KK+++AN  + ++VDP
Sbjct: 21  DESKLTDHIKPIEEKWKLVPAFLKCRGLVKQHIDSFNFFINVEMKKIVKANEKLTTEVDP 80

Query: 161 LFYLKYLDIHVGI 173
            FY K+ +I VG+
Sbjct: 81  AFYAKFTEIQVGM 93



 Score = 85.1 bits (209), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 40/71 (56%), Positives = 52/71 (73%)

Query: 340 EVCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIML 399
           +V  P + E    +   TP +CRLRD+TYSAPITV++EY RG Q V R ++VIGR+PIML
Sbjct: 90  QVGMPALTEENYESVSMTPQKCRLRDMTYSAPITVNLEYVRGKQIVGRKNVVIGRIPIML 149

Query: 400 QSSKCVLRNKT 410
           +SS CVL NK+
Sbjct: 150 RSSNCVLTNKS 160


>gi|365758302|gb|EHN00152.1| Ret1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
          Length = 1149

 Score =  335 bits (858), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 155/265 (58%), Positives = 204/265 (76%), Gaps = 5/265 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ  RIDTL+Y + Y Q+PMV++KTI + +
Sbjct: 686  GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMTYPQQPMVKTKTIELID 745

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+AVMSYSGYDIEDAL++NK+S+DRGFGRC   R +  VLK+Y N T D 
Sbjct: 746  YDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCETRRKTTTVLKRYANHTQD- 804

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSA----ISMATP 1088
            I+G +   +  +P+++H++L  DG+   G ++   Q+ +NKS+PT S  A    I     
Sbjct: 805  IIGGMRVDENGEPIWQHQSLGPDGLGEVGMKVQSGQIYINKSVPTNSADAPNPNIVNVQT 864

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
            +Y+E PV Y+G  PS++++V++S +  D  LIK+LLRQ+RRPE+GDKFSSRHGQKGV G+
Sbjct: 865  QYREAPVIYRGPEPSHIDQVMMSVSDNDQALIKVLLRQSRRPELGDKFSSRHGQKGVCGI 924

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            IV+QEDMPFN+ GI PDIIMNPHG 
Sbjct: 925  IVKQEDMPFNDQGIVPDIIMNPHGF 949



 Score =  285 bits (729), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 128/193 (66%), Positives = 162/193 (83%)

Query: 1180 TEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1239
            T+Y+E PV Y+G  PS++++V++S +  D  LIK+LLRQ+RRPE+GDKFSSRHGQKGV G
Sbjct: 864  TQYREAPVIYRGPEPSHIDQVMMSVSDNDQALIKVLLRQSRRPELGDKFSSRHGQKGVCG 923

Query: 1240 LIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTK 1299
            +IV+QEDMPFN+ GI PDIIMNPHG+PSRMTVGK+IEL++GKAG+M G  + GT FGG+K
Sbjct: 924  IIVKQEDMPFNDQGIVPDIIMNPHGFPSRMTVGKMIELISGKAGVMNGTLEYGTCFGGSK 983

Query: 1300 LVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPR 1359
            L D+ + L+  G+NY GKD+ YSGITGE L+AYI+ GP+YYQKLKHMV DK+HAR+RGPR
Sbjct: 984  LEDMSKILVDQGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPR 1043

Query: 1360 VVLTRQPTGRRWK 1372
             VLTRQPT  R +
Sbjct: 1044 AVLTRQPTEGRSR 1056



 Score =  186 bits (472), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 104/204 (50%), Positives = 140/204 (68%), Gaps = 9/204 (4%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPK-IKAAQFD--IV 189
           ID  DY  N  ++   Q  + ++ D   LF     D  + I DK++ K  +A ++D  + 
Sbjct: 366 IDDRDYVGNKRLELAGQLISLLFED---LFKKFNNDFKLSI-DKVLKKPNRAMEYDALLS 421

Query: 190 NHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
            ++  + IT+ L  AI TGNW+++RFKMER GVT VLSRLSYIS LGMMTRI+SQFEK+R
Sbjct: 422 INVHSNNITSGLNRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSR 481

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHI 309
           KVSGPR+LQ SQ+GMLC +DTPEGEACGLVKNLALMTHITT+++E+ +  + Y +G+E I
Sbjct: 482 KVSGPRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEEEPIKNLCYVLGVEDI 541

Query: 310 AMFNGEELSSPGVYLVFVNGILAG 333
            + +   L     Y V++NG L G
Sbjct: 542 TLIDSASLHLN--YGVYLNGTLIG 563



 Score =  164 bits (414), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 86/154 (55%), Positives = 105/154 (68%), Gaps = 17/154 (11%)

Query: 671 SSGCQPRPTFLNMHQFLGFK-RFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHL 729
           SSG Q R    ++ Q L  K  FDDFL  G +EYLDVNE NDS+IA+ E  I P +T HL
Sbjct: 616 SSG-QSRVKDTHLRQLLDGKLDFDDFLKLGLVEYLDVNEENDSYIALYEKDIVPSMT-HL 673

Query: 730 EIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQN 789
           EI PFT+LG  AG              L+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ  
Sbjct: 674 EIEPFTILGAVAG--------------LIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFK 719

Query: 790 RIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
           RIDTL+Y + Y Q+PMV++KTI + ++ KLPAG+
Sbjct: 720 RIDTLLYLMTYPQQPMVKTKTIELIDYDKLPAGQ 753



 Score =  102 bits (253), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 49/113 (43%), Positives = 81/113 (71%), Gaps = 2/113 (1%)

Query: 421 TSSVTMHSQRTSPLLSCKKLRQKRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAM 480
           +S + +++Q+ +      K++  R Q  K T + +  + +++T IAH+ V  + F+ KA+
Sbjct: 290 SSKLDIYTQQQALEYIGAKVKTMRRQ--KLTILQEGVEAIATTVIAHLTVEALDFREKAL 347

Query: 481 YLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
           Y+A+M RR+V+A+ +P M+DDRDY GNKRLELAG L+SL+FED+FK+FN++ K
Sbjct: 348 YIAMMTRRVVMAMYNPKMIDDRDYVGNKRLELAGQLISLLFEDLFKKFNNDFK 400



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/60 (61%), Positives = 50/60 (83%)

Query: 113 RDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           +DKW L+ +FLK KGLVK H+DSF+YF++ ++KK+++AN  I SDVDP FYLKY+DI VG
Sbjct: 42  QDKWHLLPAFLKVKGLVKQHLDSFNYFVDTDLKKIIKANQLILSDVDPEFYLKYIDIRVG 101



 Score = 84.3 bits (207), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 37/56 (66%), Positives = 45/56 (80%)

Query: 356 TTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKTE 411
           T PHECRLRD+TYSAPI VDIEYTRG   ++  D+ IGRMPIML+S+KC+L +  E
Sbjct: 113 TPPHECRLRDMTYSAPIYVDIEYTRGRNIIMHKDVEIGRMPIMLRSNKCILYDADE 168


>gi|255721739|ref|XP_002545804.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Candida
            tropicalis MYA-3404]
 gi|240136293|gb|EER35846.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Candida
            tropicalis MYA-3404]
          Length = 1159

 Score =  334 bits (856), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 160/269 (59%), Positives = 202/269 (75%), Gaps = 10/269 (3%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ  RIDTL+Y +VY Q+PMV++KTI + +
Sbjct: 695  GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFRRIDTLLYFMVYPQQPMVKTKTIELID 754

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+AVMSYSGYDIEDAL++NK+SLDRGFGRC V R +   LK+YPN T D 
Sbjct: 755  YDKLPAGQNATVAVMSYSGYDIEDALVLNKSSLDRGFGRCQVVRKNTVQLKKYPNHTQD- 813

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPE--- 1089
            IL  +   +   P++ H+AL  DG+   G +I   QV  NK +PT S  + ++  P+   
Sbjct: 814  ILSGMRVDENNNPIFPHQALGPDGLGEVGSRIHNGQVFANKCVPTNSGES-ALGGPQQDD 872

Query: 1090 -----YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKG 1144
                 ++E P  YKG  PSY+++V++S +  D  LIK+LLRQTRRPE+GDKFSSRHGQKG
Sbjct: 873  RQMDRHREAPAFYKGPEPSYIDQVMMSVSDNDQALIKVLLRQTRRPELGDKFSSRHGQKG 932

Query: 1145 VIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            V G+IV+QEDMPFN+ GI PDIIMNPHG 
Sbjct: 933  VCGIIVQQEDMPFNDYGISPDIIMNPHGF 961



 Score =  277 bits (708), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 125/195 (64%), Positives = 161/195 (82%)

Query: 1178 RITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV 1237
            ++  ++E P  YKG  PSY+++V++S +  D  LIK+LLRQTRRPE+GDKFSSRHGQKGV
Sbjct: 874  QMDRHREAPAFYKGPEPSYIDQVMMSVSDNDQALIKVLLRQTRRPELGDKFSSRHGQKGV 933

Query: 1238 IGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGG 1297
             G+IV+QEDMPFN+ GI PDIIMNPHG+PSRMTVGK+IEL++GKAG++ G+ + GT FGG
Sbjct: 934  CGIIVQQEDMPFNDYGISPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGSLEYGTCFGG 993

Query: 1298 TKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRG 1357
            +KL D+ + L+  G++Y GKD+  SGITGE L+AYI+ GP+YYQKLKHMV DK+HAR+RG
Sbjct: 994  SKLEDMSKILVEKGFSYSGKDMLQSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARG 1053

Query: 1358 PRVVLTRQPTGRRWK 1372
            PR VLTRQPT  R +
Sbjct: 1054 PRAVLTRQPTEGRSR 1068



 Score =  190 bits (482), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 105/206 (50%), Positives = 138/206 (66%), Gaps = 7/206 (3%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPK-IKAAQFD--IV 189
           +D  DY  N  ++   Q  + ++ D   LF     D    I DK++ K  + ++FD  + 
Sbjct: 369 VDDRDYVGNKRLELAGQLMSLLFED---LFKKFNSDFKANI-DKVLKKPSRTSEFDALLS 424

Query: 190 NHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
            ++  + IT  L  AI TGNW+++RFKMER GVT VLSRLSYIS LGMMTRI+SQFEK+R
Sbjct: 425 INIHSNNITMGLNRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSR 484

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHI 309
           KVSGPR+LQ SQ+GMLC +DTPEGEACGLVKNLALMTHITT+++E  + K+   +G E I
Sbjct: 485 KVSGPRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEEAPVKKLCIALGCEPI 544

Query: 310 AMFNGEELSSPGVYLVFVNGILAGIT 335
              +   L S G + V++NG L G T
Sbjct: 545 YALDSATLHSEGNFGVYLNGTLIGTT 570



 Score =  157 bits (398), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 77/135 (57%), Positives = 93/135 (68%), Gaps = 17/135 (12%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPG---VTTHLEIAPFTLLGVCAGIELLQY 748
           FDDFL  G +EYLDVNE NDS IA+ E  I        TH+EI PFT+LG  AG      
Sbjct: 642 FDDFLKHGLVEYLDVNEENDSLIALYEEDINANSSTTVTHMEIEPFTVLGAVAG------ 695

Query: 749 NKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVES 808
                   L+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ  RIDTL+Y +VY Q+PMV++
Sbjct: 696 --------LIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFRRIDTLLYFMVYPQQPMVKT 747

Query: 809 KTIRITNFHKLPAGK 823
           KTI + ++ KLPAG+
Sbjct: 748 KTIELIDYDKLPAGQ 762



 Score =  103 bits (256), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 47/114 (41%), Positives = 82/114 (71%), Gaps = 1/114 (0%)

Query: 421 TSSVTMHSQRTSPLLSCKKLRQ-KRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKA 479
            + + + +Q+ + L   K+++  +R    K + + +  + +++T +AH+ V +++F+ KA
Sbjct: 290 AAKLEVFTQQQALLYVGKRVKTIRRAGAPKLSQLQEGIEAIATTIVAHLTVSDLQFREKA 349

Query: 480 MYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
           +Y+A M RR+V+A+ +P M+DDRDY GNKRLELAG L+SL+FED+FK+FNS+ K
Sbjct: 350 LYIATMARRVVMAMHNPKMVDDRDYVGNKRLELAGQLMSLLFEDLFKKFNSDFK 403



 Score = 87.4 bits (215), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 42/78 (53%), Positives = 53/78 (67%), Gaps = 5/78 (6%)

Query: 334 ITCHHKEVCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIG 393
           I   HK   KP ++E         PHECRLRDLTYSAPI VD+EYTRG + +  +DL IG
Sbjct: 96  IRVGHKSTAKPGVKEVI-----LPPHECRLRDLTYSAPIYVDVEYTRGRKIIRHNDLEIG 150

Query: 394 RMPIMLQSSKCVLRNKTE 411
           RMP+ML+S+KC+L   +E
Sbjct: 151 RMPVMLRSNKCMLEGMSE 168



 Score = 86.7 bits (213), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 38/69 (55%), Positives = 53/69 (76%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGI 173
           DKW L+ +FLK KGLVK H+DS++YF++V++KK+++AN  + SDVDP FY+KYLDI VG 
Sbjct: 41  DKWNLLPAFLKVKGLVKQHLDSYNYFVDVDLKKIIKANELVLSDVDPEFYVKYLDIRVGH 100

Query: 174 ADKIIPKIK 182
                P +K
Sbjct: 101 KSTAKPGVK 109


>gi|254584222|ref|XP_002497679.1| ZYRO0F11066p [Zygosaccharomyces rouxii]
 gi|238940572|emb|CAR28746.1| ZYRO0F11066p [Zygosaccharomyces rouxii]
          Length = 1143

 Score =  334 bits (856), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 150/262 (57%), Positives = 204/262 (77%), Gaps = 2/262 (0%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ  RIDTL+Y ++Y Q+PMV++KTI + +
Sbjct: 683  GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMIYPQQPMVKTKTIELID 742

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+A+MSYSGYDIEDAL++NK+S+DRGFGRC   R +  VLK+YPN T D 
Sbjct: 743  YDKLPAGQNATVAIMSYSGYDIEDALVLNKSSIDRGFGRCETRRKTTAVLKRYPNHTQD- 801

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPT-ISVSAISMATPEYK 1091
            I+G +   +  +P+++H++L  DG+   G ++   Q+ +NKS+PT  S   ++    +Y+
Sbjct: 802  IIGGMRVNENGEPIWQHKSLGPDGLGEVGMKLDSGQIYINKSVPTNASEGVLTQTQSQYR 861

Query: 1092 EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVE 1151
            E PV Y+   PS++++V++S +  D  LIK+LLRQ RRPE+GDKFSSRHGQKGV G+IV+
Sbjct: 862  ETPVIYRAPEPSHIDQVMMSVSDNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCGIIVQ 921

Query: 1152 QEDMPFNESGICPDIIMNPHGL 1173
            QEDMPF++ G+ PDIIMNPHG 
Sbjct: 922  QEDMPFSDQGVVPDIIMNPHGF 943



 Score =  279 bits (714), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 123/193 (63%), Positives = 162/193 (83%)

Query: 1180 TEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1239
            ++Y+E PV Y+   PS++++V++S +  D  LIK+LLRQ RRPE+GDKFSSRHGQKGV G
Sbjct: 858  SQYRETPVIYRAPEPSHIDQVMMSVSDNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCG 917

Query: 1240 LIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTK 1299
            +IV+QEDMPF++ G+ PDIIMNPHG+PSRMTVGK+IEL++GKAG+M G+ + GT FGG+K
Sbjct: 918  IIVQQEDMPFSDQGVVPDIIMNPHGFPSRMTVGKMIELISGKAGVMNGSLEYGTCFGGSK 977

Query: 1300 LVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPR 1359
            L D+ + L+ +G+NY GKD+ YSG+TGE L+AYI+ GP+YYQKLKHMV DK+HAR+RGPR
Sbjct: 978  LEDMSQILVDNGFNYSGKDMLYSGVTGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPR 1037

Query: 1360 VVLTRQPTGRRWK 1372
             VLTRQPT  R +
Sbjct: 1038 AVLTRQPTEGRSR 1050



 Score =  188 bits (478), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 101/206 (49%), Positives = 143/206 (69%), Gaps = 9/206 (4%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPK-IKAAQFD--IV 189
           +D  DY  N  ++   Q  + ++ D+    + K+ +      DK++ K  +A ++D  + 
Sbjct: 363 VDDRDYVGNKRLELAGQLISLLFEDL----FKKFNNDFKASIDKVLKKPNRAMEYDALLS 418

Query: 190 NHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
            ++  + IT+ L+ AI TGNW+++RFKMER GVT VLSRLSYIS LGMMTRI+SQFEK+R
Sbjct: 419 INVHSNNITSGLSRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSR 478

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHI 309
           KVSGPR+LQ SQ+GMLC +DTPEGEACGLVKNLALMTHITT+++E+ + K+ + +G+E I
Sbjct: 479 KVSGPRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEEEPIKKLCFILGVEDI 538

Query: 310 AMFNGEELSSPGVYLVFVNGILAGIT 335
            + +   L     Y V++NG L G T
Sbjct: 539 TLIDSASLHLH--YGVYLNGTLIGTT 562



 Score =  165 bits (417), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 78/132 (59%), Positives = 96/132 (72%), Gaps = 15/132 (11%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKR 751
           FDDFL  G +EYLDVNE NDS IA+ E  I P +T H+EI PFT+LG CAG         
Sbjct: 634 FDDFLKLGLVEYLDVNEENDSFIALYEQDIAPEIT-HMEIEPFTVLGACAG--------- 683

Query: 752 FHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTI 811
                L+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ  RIDTL+Y ++Y Q+PMV++KTI
Sbjct: 684 -----LIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMIYPQQPMVKTKTI 738

Query: 812 RITNFHKLPAGK 823
            + ++ KLPAG+
Sbjct: 739 ELIDYDKLPAGQ 750



 Score = 97.4 bits (241), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 47/115 (40%), Positives = 80/115 (69%), Gaps = 2/115 (1%)

Query: 421 TSSVTMHSQRTSPLLSCKKLRQKRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAM 480
            S + +++Q+ +      K++  R Q  K + + +  + +++T IAH+ V  + F+ KA+
Sbjct: 287 ASKLGLYTQQQALEYIGSKVKTVRRQ--KLSVLQEGIEAIATTVIAHLTVAALDFREKAL 344

Query: 481 YLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELKET 535
           Y+A+M RR+V+A+ +  M+DDRDY GNKRLELAG L+SL+FED+FK+FN++ K +
Sbjct: 345 YIAMMTRRVVMAMQNYKMVDDRDYVGNKRLELAGQLISLLFEDLFKKFNNDFKAS 399



 Score = 87.8 bits (216), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 39/58 (67%), Positives = 46/58 (79%)

Query: 356 TTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKTEYT 413
           T PHECRLRD+TYSAPI VDIEYTRG   ++  D+ IGRMPIML+S+KC+L N  E T
Sbjct: 110 TPPHECRLRDMTYSAPIYVDIEYTRGRNIIMHKDVEIGRMPIMLRSNKCILHNSDEKT 167



 Score = 87.8 bits (216), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 39/65 (60%), Positives = 51/65 (78%)

Query: 108 DSPEIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYL 167
           D     DKW L+ +FLK KGLVK H+DSF+YF++V++KK+++AN  I SDVDP FYLKY+
Sbjct: 34  DVSTAEDKWNLLPAFLKVKGLVKQHLDSFNYFVDVDLKKIIKANQLILSDVDPEFYLKYV 93

Query: 168 DIHVG 172
           DI VG
Sbjct: 94  DIRVG 98


>gi|358378199|gb|EHK15881.1| hypothetical protein TRIVIDRAFT_206553 [Trichoderma virens Gv29-8]
          Length = 1157

 Score =  333 bits (854), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 154/266 (57%), Positives = 201/266 (75%), Gaps = 5/266 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+P+PHHNQ+PRNTYQCAMGKQA+G I +NQ NRIDTL+Y LVY QRPMV +KTI++ +
Sbjct: 688  GLIPFPHHNQSPRNTYQCAMGKQAIGAIAHNQFNRIDTLLYTLVYPQRPMVITKTIQLIH 747

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+ VMSYSGYDIEDAL++NKAS+DRGFGRC V+R     L++YPN   +R
Sbjct: 748  YDKLPAGQNATVVVMSYSGYDIEDALVLNKASIDRGFGRCQVFRKYTTELQKYPNGRRER 807

Query: 1033 ILGPLLEAD--TRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMP---TISVSAISMAT 1087
            I  PL E D    + + +H ALD DG+   G++I   + +V K  P   T +   +    
Sbjct: 808  IGDPLNEIDNGVMRRIKKHEALDDDGLAIVGQRIHSGEAMVKKETPLDMTTTGIGLDRGP 867

Query: 1088 PEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
             EY++  VSY+ + P+Y++KV++S   +D  +IK+  RQTRRPE+GDKFSSRHGQKGV+G
Sbjct: 868  SEYRDTAVSYRIADPAYIDKVMISQTEKDTTVIKVQTRQTRRPELGDKFSSRHGQKGVVG 927

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            +IV+QEDMPF +SG+CPDIIMNPHG 
Sbjct: 928  IIVDQEDMPFADSGLCPDIIMNPHGF 953



 Score =  262 bits (670), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 121/201 (60%), Positives = 160/201 (79%), Gaps = 3/201 (1%)

Query: 1175 GCDR-ITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
            G DR  +EY++  VSY+ + P+Y++KV++S   +D  +IK+  RQTRRPE+GDKFSSRHG
Sbjct: 862  GLDRGPSEYRDTAVSYRIADPAYIDKVMISQTEKDTTVIKVQTRQTRRPELGDKFSSRHG 921

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEG--NYKE 1291
            QKGV+G+IV+QEDMPF +SG+CPDIIMNPHG+PSRMTVGKL+E L GKA ++ G   Y  
Sbjct: 922  QKGVVGIIVDQEDMPFADSGLCPDIIMNPHGFPSRMTVGKLLECLTGKASIVHGRKEYGF 981

Query: 1292 GTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKI 1351
            G AF    +  V + L+ HG++++GKD F SGITGE LEAYI++GP+YYQ+LKHMVQDK+
Sbjct: 982  GDAFRSHPVEQVSKVLVDHGFSWEGKDYFTSGITGEPLEAYIFNGPIYYQRLKHMVQDKM 1041

Query: 1352 HARSRGPRVVLTRQPTGRRWK 1372
            H+R+RGPR +LTRQPT  R +
Sbjct: 1042 HSRARGPRAILTRQPTEGRSR 1062



 Score =  191 bits (485), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 94/154 (61%), Positives = 117/154 (75%), Gaps = 4/154 (2%)

Query: 188 IVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEK 247
           I NH   ++I   +  AIQ+GNW+++RF M R GVT VLSRLSYIS LGMMTRI+SQFEK
Sbjct: 420 ISNH--ANSIGLGINRAIQSGNWSVKRFNMNRAGVTHVLSRLSYISALGMMTRISSQFEK 477

Query: 248 TRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMY--NIG 305
           TRKVSGPR+LQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT  DE  +++ ++  ++G
Sbjct: 478 TRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTNVDEAPVMRWIFTLDVG 537

Query: 306 IEHIAMFNGEELSSPGVYLVFVNGILAGITCHHK 339
           +E I  F+G E+   G Y++ VNG    +T + K
Sbjct: 538 VEPIRNFSGAEMHREGSYIIHVNGTPFALTRYPK 571



 Score =  162 bits (409), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 82/147 (55%), Positives = 102/147 (69%), Gaps = 16/147 (10%)

Query: 677 RPTFLNMHQFLGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTL 736
           +P  L + Q +G   FDDFL +G +EYLDVNE ND+ I + E  +    TTHLEI PFTL
Sbjct: 625 KPEHLRLLQ-MGKVTFDDFLTKGIVEYLDVNEENDALITIYEDQVTMS-TTHLEIEPFTL 682

Query: 737 LGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMY 796
           LG  AG              L+P+PHHNQ+PRNTYQCAMGKQA+G I +NQ NRIDTL+Y
Sbjct: 683 LGAVAG--------------LIPFPHHNQSPRNTYQCAMGKQAIGAIAHNQFNRIDTLLY 728

Query: 797 NLVYAQRPMVESKTIRITNFHKLPAGK 823
            LVY QRPMV +KTI++ ++ KLPAG+
Sbjct: 729 TLVYPQRPMVITKTIQLIHYDKLPAGQ 755



 Score = 99.4 bits (246), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/130 (39%), Positives = 82/130 (63%), Gaps = 3/130 (2%)

Query: 407 RNKTEYTSSSRRASTSSVTMHSQRTSPLLSCKKLRQKRFQ---TYKKTPVDDARDFLSST 463
           R + E+  +   A+ + +    Q    + S  K+  ++ Q     ++  V++  D L++ 
Sbjct: 269 RYQDEFLVNFDEAAKAGIFTQHQALEYIGSRVKMGSRKGQFGAQARRNNVEEGLDALANL 328

Query: 464 CIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGSLLSLMFED 523
            IAH+P+  + F  KA+Y+A+M RR+++A  DP ++DDRD+ GNKRLELAG LLSL+FED
Sbjct: 329 IIAHVPIEGLDFYPKAIYVAMMTRRVLMASQDPKLVDDRDFVGNKRLELAGQLLSLLFED 388

Query: 524 VFKRFNSELK 533
           +FKRF  E+K
Sbjct: 389 LFKRFMGEVK 398



 Score = 74.3 bits (181), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 32/52 (61%), Positives = 41/52 (78%)

Query: 355 QTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVL 406
           + TP ECRLRD+TY+API VDI Y R  Q++VR ++ +GRMPIML+S KC L
Sbjct: 103 EVTPMECRLRDMTYAAPIFVDIAYIRDKQKIVRKNVPLGRMPIMLKSCKCRL 154



 Score = 69.3 bits (168), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 45/58 (77%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           DK++L+ +FLK KGLVK HIDS+++F+  EIK++++AN  I SDVD  F+L + DI V
Sbjct: 30  DKFQLLPAFLKVKGLVKQHIDSYNFFVETEIKEIVRANRTIRSDVDSNFWLDFTDIRV 87


>gi|349581364|dbj|GAA26522.1| K7_Ret1p [Saccharomyces cerevisiae Kyokai no. 7]
          Length = 1149

 Score =  333 bits (854), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 155/266 (58%), Positives = 206/266 (77%), Gaps = 7/266 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ  RIDTL+Y + Y Q+PMV++KTI + +
Sbjct: 686  GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMTYPQQPMVKTKTIELID 745

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+AVMSYSGYDIEDAL++NK+S+DRGFGRC   R +  VLK+Y N T D 
Sbjct: 746  YDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCETRRKTTTVLKRYANHTQD- 804

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSA-----ISMAT 1087
            I+G +   +  +P+++H++L  DG+   G ++   Q+ +NKS+PT S  A     +++ T
Sbjct: 805  IIGGMRVDENGEPIWQHQSLGPDGLGEVGMKVQSGQIYINKSVPTNSADAPNPNNVNVQT 864

Query: 1088 PEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
             +Y+E PV Y+G  PS++++V++S +  D  LIK+LLRQ RRPE+GDKFSSRHGQKGV G
Sbjct: 865  -QYREAPVIYRGPEPSHIDQVMMSVSDNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCG 923

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            +IV+QEDMPFN+ GI PDIIMNPHG 
Sbjct: 924  IIVKQEDMPFNDQGIVPDIIMNPHGF 949



 Score =  283 bits (725), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 127/193 (65%), Positives = 161/193 (83%)

Query: 1180 TEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1239
            T+Y+E PV Y+G  PS++++V++S +  D  LIK+LLRQ RRPE+GDKFSSRHGQKGV G
Sbjct: 864  TQYREAPVIYRGPEPSHIDQVMMSVSDNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCG 923

Query: 1240 LIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTK 1299
            +IV+QEDMPFN+ GI PDIIMNPHG+PSRMTVGK+IEL++GKAG++ G  + GT FGG+K
Sbjct: 924  IIVKQEDMPFNDQGIVPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGTLEYGTCFGGSK 983

Query: 1300 LVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPR 1359
            L D+ + L+  G+NY GKD+ YSGITGE L+AYI+ GP+YYQKLKHMV DK+HAR+RGPR
Sbjct: 984  LEDMSKILVDQGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPR 1043

Query: 1360 VVLTRQPTGRRWK 1372
             VLTRQPT  R +
Sbjct: 1044 AVLTRQPTEGRSR 1056



 Score =  188 bits (478), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 105/204 (51%), Positives = 141/204 (69%), Gaps = 9/204 (4%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPK-IKAAQFD--IV 189
           ID  DY  N  ++   Q  + ++ D   LF     D  + I DK++ K  +A ++D  + 
Sbjct: 366 IDDRDYVGNKRLELAGQLISLLFED---LFKKFNNDFKLSI-DKVLKKPNRAMEYDALLS 421

Query: 190 NHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
            ++  + IT+ L  AI TGNW+++RFKMER GVT VLSRLSYIS LGMMTRI+SQFEK+R
Sbjct: 422 INVHSNNITSGLNRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSR 481

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHI 309
           KVSGPR+LQ SQ+GMLC +DTPEGEACGLVKNLALMTHITT+++E+ + K+ Y +G+E I
Sbjct: 482 KVSGPRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEEEPIKKLCYVLGVEDI 541

Query: 310 AMFNGEELSSPGVYLVFVNGILAG 333
            + +   L     Y V++NG L G
Sbjct: 542 TLIDSASLHLN--YGVYLNGTLIG 563



 Score =  162 bits (411), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 83/153 (54%), Positives = 104/153 (67%), Gaps = 16/153 (10%)

Query: 672 SGCQPRPTFLNMHQFL-GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLE 730
           S  Q R   +++ + L G   FDDFL  G +EYLDVNE NDS+IA+ E  I P +T HLE
Sbjct: 616 SDGQSRVKDIHLRKLLDGELDFDDFLKLGLVEYLDVNEENDSYIALYEKDIVPSMT-HLE 674

Query: 731 IAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNR 790
           I PFT+LG  AG              L+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ  R
Sbjct: 675 IEPFTILGAVAG--------------LIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKR 720

Query: 791 IDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
           IDTL+Y + Y Q+PMV++KTI + ++ KLPAG+
Sbjct: 721 IDTLLYLMTYPQQPMVKTKTIELIDYDKLPAGQ 753



 Score =  101 bits (252), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 49/113 (43%), Positives = 81/113 (71%), Gaps = 2/113 (1%)

Query: 421 TSSVTMHSQRTSPLLSCKKLRQKRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAM 480
           +S + +++Q+ +      K++  R Q  K T + +  + +++T IAH+ V  + F+ KA+
Sbjct: 290 SSKLDIYTQQQALEYIGAKVKTMRRQ--KLTILQEGIEAIATTVIAHLTVEALDFREKAL 347

Query: 481 YLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
           Y+A+M RR+V+A+ +P M+DDRDY GNKRLELAG L+SL+FED+FK+FN++ K
Sbjct: 348 YIAMMTRRVVMAMYNPKMIDDRDYVGNKRLELAGQLISLLFEDLFKKFNNDFK 400



 Score = 85.1 bits (209), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/60 (61%), Positives = 50/60 (83%)

Query: 113 RDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           +DKW L+ +FLK KGLVK H+DSF+YF++ ++KK+++AN  I SDVDP FYLKY+DI VG
Sbjct: 42  QDKWHLLPAFLKVKGLVKQHLDSFNYFVDTDLKKIIKANQLILSDVDPEFYLKYVDIRVG 101



 Score = 84.3 bits (207), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 37/56 (66%), Positives = 45/56 (80%)

Query: 356 TTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKTE 411
           T PHECRLRD+TYSAPI VDIEYTRG   ++  D+ IGRMPIML+S+KC+L +  E
Sbjct: 113 TPPHECRLRDMTYSAPIYVDIEYTRGRNIIMHKDVEIGRMPIMLRSNKCILYDADE 168


>gi|401623550|gb|EJS41646.1| ret1p [Saccharomyces arboricola H-6]
          Length = 1149

 Score =  333 bits (853), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 155/266 (58%), Positives = 206/266 (77%), Gaps = 7/266 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ  RIDTL+Y + Y Q+PMV++KTI + +
Sbjct: 686  GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMTYPQQPMVKTKTIELID 745

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+AVMSYSGYDIEDAL++NK+S+DRGFGRC   R +  VLK+Y N T D 
Sbjct: 746  YDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCETRRKTTTVLKRYANHTQD- 804

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSA-----ISMAT 1087
            I+G +   +  +P+++H++L  DG+   G ++   Q+ +NKS+PT S  A     +++ T
Sbjct: 805  IIGGMRVDENGEPIWQHQSLGPDGLGEVGMKVKSGQIYINKSVPTNSTDAPNPNNVNVQT 864

Query: 1088 PEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
             +Y+E PV Y+G  PS++++V++S +  D  LIK+LLRQ RRPE+GDKFSSRHGQKGV G
Sbjct: 865  -QYREAPVIYRGPEPSHIDQVMMSVSDNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCG 923

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            +IV+QEDMPFN+ GI PDIIMNPHG 
Sbjct: 924  IIVKQEDMPFNDQGIVPDIIMNPHGF 949



 Score =  284 bits (727), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 128/193 (66%), Positives = 161/193 (83%)

Query: 1180 TEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1239
            T+Y+E PV Y+G  PS++++V++S +  D  LIK+LLRQ RRPE+GDKFSSRHGQKGV G
Sbjct: 864  TQYREAPVIYRGPEPSHIDQVMMSVSDNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCG 923

Query: 1240 LIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTK 1299
            +IV+QEDMPFN+ GI PDIIMNPHG+PSRMTVGK+IEL++GKAG+M G  + GT FGG+K
Sbjct: 924  IIVKQEDMPFNDQGIVPDIIMNPHGFPSRMTVGKMIELISGKAGVMNGTLEYGTCFGGSK 983

Query: 1300 LVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPR 1359
            L D+ + L+  G+NY GKD+ YSGITGE L+AYI+ GP+YYQKLKHMV DK+HAR+RGPR
Sbjct: 984  LEDMSKILVDQGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPR 1043

Query: 1360 VVLTRQPTGRRWK 1372
             VLTRQPT  R +
Sbjct: 1044 AVLTRQPTEGRSR 1056



 Score =  188 bits (478), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 105/204 (51%), Positives = 141/204 (69%), Gaps = 9/204 (4%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPK-IKAAQFD--IV 189
           ID  DY  N  ++   Q  + ++ D   LF     D  + I DK++ K  +A ++D  + 
Sbjct: 366 IDDRDYVGNKRLELAGQLISLLFED---LFKKFNNDFKLSI-DKVLKKPNRAMEYDALLS 421

Query: 190 NHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
            ++  + IT+ L  AI TGNW+++RFKMER GVT VLSRLSYIS LGMMTRI+SQFEK+R
Sbjct: 422 INVHSNNITSGLNRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSR 481

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHI 309
           KVSGPR+LQ SQ+GMLC +DTPEGEACGLVKNLALMTHITT+++E+ + K+ Y +G+E I
Sbjct: 482 KVSGPRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEEEPIKKLCYVLGVEDI 541

Query: 310 AMFNGEELSSPGVYLVFVNGILAG 333
            + +   L     Y V++NG L G
Sbjct: 542 TLIDSASLHLN--YGVYLNGTLVG 563



 Score =  166 bits (419), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 85/153 (55%), Positives = 104/153 (67%), Gaps = 16/153 (10%)

Query: 672 SGCQPRPTFLNMHQFL-GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLE 730
           SG Q R    ++ Q L G   FDDFL  G +EYLDVNE NDS+IA+ E  I P +T HLE
Sbjct: 616 SGGQSRVKDTHLRQLLEGKLDFDDFLKLGLVEYLDVNEENDSYIALYEKDIIPSMT-HLE 674

Query: 731 IAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNR 790
           I PFT+LG  AG              L+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ  R
Sbjct: 675 IEPFTILGAVAG--------------LIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKR 720

Query: 791 IDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
           IDTL+Y + Y Q+PMV++KTI + ++ KLPAG+
Sbjct: 721 IDTLLYLMTYPQQPMVKTKTIELIDYDKLPAGQ 753



 Score =  100 bits (248), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 48/113 (42%), Positives = 81/113 (71%), Gaps = 2/113 (1%)

Query: 421 TSSVTMHSQRTSPLLSCKKLRQKRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAM 480
           +S + +++Q+ +      K++  R Q  K + + +  + +++T IAH+ V  + F+ KA+
Sbjct: 290 SSKLDIYTQQQALEYIGAKVKTMRRQ--KLSILQEGIEAIATTVIAHLTVEALDFREKAL 347

Query: 481 YLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
           Y+A+M RR+V+A+ +P M+DDRDY GNKRLELAG L+SL+FED+FK+FN++ K
Sbjct: 348 YIAMMTRRVVMAMYNPKMIDDRDYVGNKRLELAGQLISLLFEDLFKKFNNDFK 400



 Score = 85.1 bits (209), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/60 (61%), Positives = 50/60 (83%)

Query: 113 RDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           +DKW L+ +FLK KGLVK H+DSF+YF++ ++KK+++AN  I SDVDP FYLKY+DI VG
Sbjct: 42  QDKWHLLPAFLKVKGLVKQHLDSFNYFVDTDLKKIIKANQLILSDVDPEFYLKYVDIRVG 101



 Score = 84.0 bits (206), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 37/56 (66%), Positives = 45/56 (80%)

Query: 356 TTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKTE 411
           T PHECRLRD+TYSAPI VDIEYTRG   ++  D+ IGRMPIML+S+KC+L +  E
Sbjct: 113 TPPHECRLRDMTYSAPIYVDIEYTRGRNIIMHKDVEIGRMPIMLRSNKCILYDADE 168


>gi|164661167|ref|XP_001731706.1| hypothetical protein MGL_0974 [Malassezia globosa CBS 7966]
 gi|159105607|gb|EDP44492.1| hypothetical protein MGL_0974 [Malassezia globosa CBS 7966]
          Length = 1131

 Score =  333 bits (853), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 161/266 (60%), Positives = 195/266 (73%), Gaps = 7/266 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G IGYNQ NRIDTL+Y +VY Q+PMV +KTI +  
Sbjct: 670  GLIPYPHHNQSPRNTYQCAMGKQAIGAIGYNQLNRIDTLLYLMVYPQKPMVSTKTIELIG 729

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNA +AVMS+SGYDIEDAL+MN ASLDRGFGRC V R    VL++Y N T DR
Sbjct: 730  YDKLPAGQNAMVAVMSFSGYDIEDALVMNCASLDRGFGRCQVMRKQSTVLRKYANGTFDR 789

Query: 1033 IL-GPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPT----ISVSAISMAT 1087
            +   P+ E    +P+ R  AL+ DGI   GE++    V +NK +PT     S   +  + 
Sbjct: 790  LADAPVNEHG--EPLRRFEALEADGISGAGERLEPGDVYINKQIPTNANDNSAGTMLNSA 847

Query: 1088 PEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
              YK  P+SYK  V  Y+++VL+S    D  L+K L+RQTRRPE+GDKFSSRHGQKGVIG
Sbjct: 848  ITYKNAPLSYKSPVEGYIDQVLISDTDSDQTLVKSLIRQTRRPELGDKFSSRHGQKGVIG 907

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            LIV Q DMPFN+ GICPDIIMNPHG 
Sbjct: 908  LIVPQADMPFNDQGICPDIIMNPHGF 933



 Score =  280 bits (715), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 127/191 (66%), Positives = 155/191 (81%)

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
            YK  P+SYK  V  Y+++VL+S    D  L+K L+RQTRRPE+GDKFSSRHGQKGVIGLI
Sbjct: 850  YKNAPLSYKSPVEGYIDQVLISDTDSDQTLVKSLIRQTRRPELGDKFSSRHGQKGVIGLI 909

Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
            V Q DMPFN+ GICPDIIMNPHG+PSRMTVGK+IEL++GKAG++ G  + GTAFGG+K+ 
Sbjct: 910  VPQADMPFNDQGICPDIIMNPHGFPSRMTVGKMIELVSGKAGVLRGTQEYGTAFGGSKVE 969

Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
            D+   L+ HGY+Y GK+   SG+TGE LEAY+Y GP+YYQKLKHMV DK+HAR+RGPR V
Sbjct: 970  DMSRILVEHGYHYGGKEYMTSGMTGEPLEAYVYFGPIYYQKLKHMVMDKMHARARGPRAV 1029

Query: 1362 LTRQPTGRRWK 1372
            LTRQPT  R +
Sbjct: 1030 LTRQPTEGRSR 1040



 Score =  219 bits (558), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 114/206 (55%), Positives = 142/206 (68%), Gaps = 7/206 (3%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKI-KAAQFDIVNH 191
           +D  DY  N  ++   Q  A ++ D   LF     D+   I DK++ K  + ++FD  N 
Sbjct: 348 VDDRDYVGNKRLELAGQLLALLFED---LFKKFNFDLKTNI-DKVLKKPNRTSEFDAYNQ 403

Query: 192 M--RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
                D IT     AI TGNW+++RFKMER GVT VLSRLSYIS LGMMTRI+SQFEKTR
Sbjct: 404 FFYHGDYITAGFVRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKTR 463

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHI 309
           KVSGPR+LQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT+ DE  ++++ Y +G+E I
Sbjct: 464 KVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDVDEAPIVRLCYALGLEDI 523

Query: 310 AMFNGEELSSPGVYLVFVNGILAGIT 335
            +  G EL  P  Y+VF+NG + G+T
Sbjct: 524 NLLTGAELYQPSTYIVFLNGNVVGVT 549



 Score =  170 bits (431), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 87/150 (58%), Positives = 104/150 (69%), Gaps = 16/150 (10%)

Query: 675 QPRPTFLNMHQF-LGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAP 733
           +P+ T  ++ Q   G   FDDFL  G +EYLDVNE NDS+IA+ E  I P  TTHLEI  
Sbjct: 603 RPQVTSEHIRQLQAGTMTFDDFLRRGLVEYLDVNEENDSNIALFEHSIGPS-TTHLEIEC 661

Query: 734 FTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDT 793
           FTLLG CAG              L+PYPHHNQ+PRNTYQCAMGKQA+G IGYNQ NRIDT
Sbjct: 662 FTLLGACAG--------------LIPYPHHNQSPRNTYQCAMGKQAIGAIGYNQLNRIDT 707

Query: 794 LMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
           L+Y +VY Q+PMV +KTI +  + KLPAG+
Sbjct: 708 LLYLMVYPQKPMVSTKTIELIGYDKLPAGQ 737



 Score =  100 bits (249), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 46/93 (49%), Positives = 69/93 (74%), Gaps = 1/93 (1%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           ++T  D+A + L++  +AH+PV    F+ K MY+A M+RR+++ + D   +DDRDY GNK
Sbjct: 298 RRTASDEALEVLATVIMAHVPVEQGDFRNKTMYIATMVRRVLVCMVDESKVDDRDYVGNK 357

Query: 509 RLELAGSLLSLMFEDVFKRFNSELKETNLSGVV 541
           RLELAG LL+L+FED+FK+FN +LK TN+  V+
Sbjct: 358 RLELAGQLLALLFEDLFKKFNFDLK-TNIDKVL 389



 Score = 85.1 bits (209), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/95 (49%), Positives = 58/95 (61%), Gaps = 10/95 (10%)

Query: 319 SPGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEY 378
            P  YL + N     IT  H E   P+  +     R  TPHECRLRD+TYSA I VDIEY
Sbjct: 65  DPKFYLKYTN-----ITVGHPERADPDAID-----RSITPHECRLRDITYSAFIYVDIEY 114

Query: 379 TRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKTEYT 413
           TRG + V R ++ IGR+PIML+S+KC L  + E T
Sbjct: 115 TRGGKIVRRKNVPIGRLPIMLRSNKCWLAGQDEAT 149



 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/68 (51%), Positives = 52/68 (76%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           I DKW L+ ++L+ KGLVK HIDSF+YF++V++K +++AN  + SD+DP FYLKY +I V
Sbjct: 18  IEDKWLLLPAYLQVKGLVKQHIDSFNYFVDVDLKNILRANERVTSDIDPKFYLKYTNITV 77

Query: 172 GIADKIIP 179
           G  ++  P
Sbjct: 78  GHPERADP 85


>gi|172383|gb|AAB59324.1| RNA polymerase III [Saccharomyces cerevisiae]
          Length = 1149

 Score =  332 bits (852), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 155/266 (58%), Positives = 205/266 (77%), Gaps = 7/266 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ  RIDTL+Y + Y Q+PMV++KTI + +
Sbjct: 686  GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMTYPQQPMVKTKTIELID 745

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+AVMSYSGYDIEDAL++NK+S+DRGFGRC   R +  VLK+Y N T D 
Sbjct: 746  YDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCETRRKTTTVLKRYANHTQD- 804

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSA-----ISMAT 1087
            I+G +   +   P+++H++L  DG+   G ++   Q+ +NKS+PT S  A     +++ T
Sbjct: 805  IIGGMRVDENGDPIWQHQSLGPDGLGEVGMKVQSGQIYINKSVPTNSADAPNPNNVNVQT 864

Query: 1088 PEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
             +Y+E PV Y+G  PS++++V++S +  D  LIK+LLRQ RRPE+GDKFSSRHGQKGV G
Sbjct: 865  -QYREAPVIYRGPEPSHIDQVMMSVSDNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCG 923

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            +IV+QEDMPFN+ GI PDIIMNPHG 
Sbjct: 924  IIVKQEDMPFNDQGIVPDIIMNPHGF 949



 Score =  283 bits (725), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 127/193 (65%), Positives = 161/193 (83%)

Query: 1180 TEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1239
            T+Y+E PV Y+G  PS++++V++S +  D  LIK+LLRQ RRPE+GDKFSSRHGQKGV G
Sbjct: 864  TQYREAPVIYRGPEPSHIDQVMMSVSDNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCG 923

Query: 1240 LIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTK 1299
            +IV+QEDMPFN+ GI PDIIMNPHG+PSRMTVGK+IEL++GKAG++ G  + GT FGG+K
Sbjct: 924  IIVKQEDMPFNDQGIVPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGTLEYGTCFGGSK 983

Query: 1300 LVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPR 1359
            L D+ + L+  G+NY GKD+ YSGITGE L+AYI+ GP+YYQKLKHMV DK+HAR+RGPR
Sbjct: 984  LEDMSKILVDQGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPR 1043

Query: 1360 VVLTRQPTGRRWK 1372
             VLTRQPT  R +
Sbjct: 1044 AVLTRQPTEGRSR 1056



 Score =  188 bits (478), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 105/204 (51%), Positives = 141/204 (69%), Gaps = 9/204 (4%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPK-IKAAQFD--IV 189
           ID  DY  N  ++   Q  + ++ D   LF     D  + I DK++ K  +A ++D  + 
Sbjct: 366 IDDRDYVGNKRLELAGQLISLLFED---LFKKFNNDFKLSI-DKVLKKPNRAMEYDALLS 421

Query: 190 NHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
            ++  + IT+ L  AI TGNW+++RFKMER GVT VLSRLSYIS LGMMTRI+SQFEK+R
Sbjct: 422 INVHSNNITSGLNRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSR 481

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHI 309
           KVSGPR+LQ SQ+GMLC +DTPEGEACGLVKNLALMTHITT+++E+ + K+ Y +G+E I
Sbjct: 482 KVSGPRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEEEPIKKLCYVLGVEDI 541

Query: 310 AMFNGEELSSPGVYLVFVNGILAG 333
            + +   L     Y V++NG L G
Sbjct: 542 TLIDSASLHLN--YGVYLNGTLIG 563



 Score =  162 bits (411), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 83/153 (54%), Positives = 104/153 (67%), Gaps = 16/153 (10%)

Query: 672 SGCQPRPTFLNMHQFL-GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLE 730
           S  Q R   +++ + L G   FDDFL  G +EYLDVNE NDS+IA+ E  I P +T HLE
Sbjct: 616 SDGQSRVKDIHLRKLLDGELDFDDFLKLGLVEYLDVNEENDSYIALYEKDIVPSMT-HLE 674

Query: 731 IAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNR 790
           I PFT+LG  AG              L+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ  R
Sbjct: 675 IEPFTILGAVAG--------------LIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKR 720

Query: 791 IDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
           IDTL+Y + Y Q+PMV++KTI + ++ KLPAG+
Sbjct: 721 IDTLLYLMTYPQQPMVKTKTIELIDYDKLPAGQ 753



 Score =  101 bits (252), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 49/113 (43%), Positives = 81/113 (71%), Gaps = 2/113 (1%)

Query: 421 TSSVTMHSQRTSPLLSCKKLRQKRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAM 480
           +S + +++Q+ +      K++  R Q  K T + +  + +++T IAH+ V  + F+ KA+
Sbjct: 290 SSKLDIYTQQQALEYIGAKVKTMRRQ--KLTILQEGIEAIATTVIAHLTVEALDFREKAL 347

Query: 481 YLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
           Y+A+M RR+V+A+ +P M+DDRDY GNKRLELAG L+SL+FED+FK+FN++ K
Sbjct: 348 YIAMMTRRVVMAMYNPKMIDDRDYVGNKRLELAGQLISLLFEDLFKKFNNDFK 400



 Score = 85.1 bits (209), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/60 (61%), Positives = 50/60 (83%)

Query: 113 RDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           +DKW L+ +FLK KGLVK H+DSF+YF++ ++KK+++AN  I SDVDP FYLKY+DI VG
Sbjct: 42  QDKWHLLPAFLKVKGLVKQHLDSFNYFVDTDLKKIIKANQLILSDVDPEFYLKYVDIRVG 101



 Score = 84.3 bits (207), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 37/56 (66%), Positives = 45/56 (80%)

Query: 356 TTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKTE 411
           T PHECRLRD+TYSAPI VDIEYTRG   ++  D+ IGRMPIML+S+KC+L +  E
Sbjct: 113 TPPHECRLRDMTYSAPIYVDIEYTRGRNIIMHKDVEIGRMPIMLRSNKCILYDADE 168


>gi|365762885|gb|EHN04417.1| Ret1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
          Length = 1149

 Score =  332 bits (852), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 155/266 (58%), Positives = 205/266 (77%), Gaps = 7/266 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ  RIDTL+Y + Y Q+PMV++KTI + +
Sbjct: 686  GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMTYPQQPMVKTKTIELID 745

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+AVMSYSGYDIEDAL++NK+S+DRGFGRC   R +  VLK+Y N T D 
Sbjct: 746  YDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCETRRKTTTVLKRYANHTQD- 804

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSA-----ISMAT 1087
            I+G +   +   P+++H++L  DG+   G ++   Q+ +NKS+PT S  A     +++ T
Sbjct: 805  IIGGMRVDENGDPIWQHQSLGPDGLGEVGMKVQSGQIYINKSVPTNSADAPNPNNVNVQT 864

Query: 1088 PEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
             +Y+E PV Y+G  PS++++V++S +  D  LIK+LLRQ RRPE+GDKFSSRHGQKGV G
Sbjct: 865  -QYREAPVIYRGPEPSHIDQVMMSVSDNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCG 923

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            +IV+QEDMPFN+ GI PDIIMNPHG 
Sbjct: 924  IIVKQEDMPFNDQGIVPDIIMNPHGF 949



 Score =  283 bits (724), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 127/193 (65%), Positives = 161/193 (83%)

Query: 1180 TEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1239
            T+Y+E PV Y+G  PS++++V++S +  D  LIK+LLRQ RRPE+GDKFSSRHGQKGV G
Sbjct: 864  TQYREAPVIYRGPEPSHIDQVMMSVSDNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCG 923

Query: 1240 LIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTK 1299
            +IV+QEDMPFN+ GI PDIIMNPHG+PSRMTVGK+IEL++GKAG++ G  + GT FGG+K
Sbjct: 924  IIVKQEDMPFNDQGIVPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGTLEYGTCFGGSK 983

Query: 1300 LVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPR 1359
            L D+ + L+  G+NY GKD+ YSGITGE L+AYI+ GP+YYQKLKHMV DK+HAR+RGPR
Sbjct: 984  LEDMSKILVDQGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPR 1043

Query: 1360 VVLTRQPTGRRWK 1372
             VLTRQPT  R +
Sbjct: 1044 AVLTRQPTEGRSR 1056



 Score =  188 bits (477), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 104/204 (50%), Positives = 141/204 (69%), Gaps = 9/204 (4%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPK-IKAAQFD--IV 189
           ID  DY  N  ++   Q  + ++ D   LF     D  + I DK++ K  +A ++D  + 
Sbjct: 366 IDDRDYVGNKRLELAGQLISLLFED---LFKKFNNDFKLSI-DKVLKKPNRAMEYDALLS 421

Query: 190 NHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
            ++  + IT+ L  AI TGNW+++RFKMER GVT VLSRLSYIS LGMMTRI+SQFEK+R
Sbjct: 422 INVHSNNITSGLNRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSR 481

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHI 309
           KVSGPR+LQ SQ+GMLC +DTPEGEACGJVKNLALMTHITT+++E+ + K+ Y +G+E I
Sbjct: 482 KVSGPRALQPSQFGMLCTADTPEGEACGJVKNLALMTHITTDDEEEPIKKLCYVLGVEDI 541

Query: 310 AMFNGEELSSPGVYLVFVNGILAG 333
            + +   L     Y V++NG L G
Sbjct: 542 TLIDSASLHLN--YGVYLNGTLIG 563



 Score =  162 bits (410), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 83/153 (54%), Positives = 104/153 (67%), Gaps = 16/153 (10%)

Query: 672 SGCQPRPTFLNMHQFL-GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLE 730
           S  Q R   +++ + L G   FDDFL  G +EYLDVNE NDS+IA+ E  I P +T HLE
Sbjct: 616 SDGQSRVKDIHLRKLLDGELDFDDFLKLGLVEYLDVNEENDSYIALYEKDIVPSMT-HLE 674

Query: 731 IAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNR 790
           I PFT+LG  AG              L+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ  R
Sbjct: 675 IEPFTILGXVAG--------------LIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKR 720

Query: 791 IDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
           IDTL+Y + Y Q+PMV++KTI + ++ KLPAG+
Sbjct: 721 IDTLLYLMTYPQQPMVKTKTIELIDYDKLPAGQ 753



 Score =  101 bits (252), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 49/113 (43%), Positives = 81/113 (71%), Gaps = 2/113 (1%)

Query: 421 TSSVTMHSQRTSPLLSCKKLRQKRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAM 480
           +S + +++Q+ +      K++  R Q  K T + +  + +++T IAH+ V  + F+ KA+
Sbjct: 290 SSKLDIYTQQQALEYIGAKVKTMRRQ--KLTILQEGIEAIATTVIAHLTVEALDFREKAL 347

Query: 481 YLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
           Y+A+M RR+V+A+ +P M+DDRDY GNKRLELAG L+SL+FED+FK+FN++ K
Sbjct: 348 YIAMMTRRVVMAMYNPKMIDDRDYVGNKRLELAGQLISLLFEDLFKKFNNDFK 400



 Score = 85.1 bits (209), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/60 (61%), Positives = 50/60 (83%)

Query: 113 RDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           +DKW L+ +FLK KGLVK H+DSF+YF++ ++KK+++AN  I SDVDP FYLKY+DI VG
Sbjct: 42  QDKWHLLPAFLKVKGLVKQHLDSFNYFVDTDLKKIIKANQLILSDVDPEFYLKYVDIRVG 101



 Score = 84.3 bits (207), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 37/56 (66%), Positives = 45/56 (80%)

Query: 356 TTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKTE 411
           T PHECRLRD+TYSAPI VDIEYTRG   ++  D+ IGRMPIML+S+KC+L +  E
Sbjct: 113 TPPHECRLRDMTYSAPIYVDIEYTRGRNIIMHKDVEIGRMPIMLRSNKCILYDADE 168


>gi|323302937|gb|EGA56741.1| Ret1p [Saccharomyces cerevisiae FostersB]
          Length = 1149

 Score =  332 bits (852), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 155/266 (58%), Positives = 205/266 (77%), Gaps = 7/266 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ  RIDTL+Y + Y Q+PMV++KTI + +
Sbjct: 686  GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMTYPQQPMVKTKTIELID 745

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+AVMSYSGYDIEDAL++NK+S+DRGFGRC   R +  VLK+Y N T D 
Sbjct: 746  YDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCETRRKTTTVLKRYANHTQD- 804

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSA-----ISMAT 1087
            I+G +   +   P+++H++L  DG+   G ++   Q+ +NKS+PT S  A     +++ T
Sbjct: 805  IIGGMRVDENGXPIWQHQSLGPDGLGEVGMKVQSGQIYINKSVPTNSADAPNPNNVNVQT 864

Query: 1088 PEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
             +Y+E PV Y+G  PS++++V++S +  D  LIK+LLRQ RRPE+GDKFSSRHGQKGV G
Sbjct: 865  -QYREAPVIYRGPEPSHIDQVMMSVSDNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCG 923

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            +IV+QEDMPFN+ GI PDIIMNPHG 
Sbjct: 924  IIVKQEDMPFNDQGIVPDIIMNPHGF 949



 Score =  283 bits (725), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 127/193 (65%), Positives = 161/193 (83%)

Query: 1180 TEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1239
            T+Y+E PV Y+G  PS++++V++S +  D  LIK+LLRQ RRPE+GDKFSSRHGQKGV G
Sbjct: 864  TQYREAPVIYRGPEPSHIDQVMMSVSDNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCG 923

Query: 1240 LIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTK 1299
            +IV+QEDMPFN+ GI PDIIMNPHG+PSRMTVGK+IEL++GKAG++ G  + GT FGG+K
Sbjct: 924  IIVKQEDMPFNDQGIVPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGTLEYGTCFGGSK 983

Query: 1300 LVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPR 1359
            L D+ + L+  G+NY GKD+ YSGITGE L+AYI+ GP+YYQKLKHMV DK+HAR+RGPR
Sbjct: 984  LEDMSKILVDQGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPR 1043

Query: 1360 VVLTRQPTGRRWK 1372
             VLTRQPT  R +
Sbjct: 1044 AVLTRQPTEGRSR 1056



 Score =  188 bits (478), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 105/204 (51%), Positives = 141/204 (69%), Gaps = 9/204 (4%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPK-IKAAQFD--IV 189
           ID  DY  N  ++   Q  + ++ D   LF     D  + I DK++ K  +A ++D  + 
Sbjct: 366 IDDRDYVGNKRLELAGQLISLLFED---LFKKFNNDFKLSI-DKVLKKPNRAMEYDALLS 421

Query: 190 NHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
            ++  + IT+ L  AI TGNW+++RFKMER GVT VLSRLSYIS LGMMTRI+SQFEK+R
Sbjct: 422 INVHSNNITSGLNRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSR 481

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHI 309
           KVSGPR+LQ SQ+GMLC +DTPEGEACGLVKNLALMTHITT+++E+ + K+ Y +G+E I
Sbjct: 482 KVSGPRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEEEPIKKLCYVLGVEDI 541

Query: 310 AMFNGEELSSPGVYLVFVNGILAG 333
            + +   L     Y V++NG L G
Sbjct: 542 TLIDSASLHLN--YGVYLNGTLIG 563



 Score =  162 bits (411), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 83/153 (54%), Positives = 104/153 (67%), Gaps = 16/153 (10%)

Query: 672 SGCQPRPTFLNMHQFL-GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLE 730
           S  Q R   +++ + L G   FDDFL  G +EYLDVNE NDS+IA+ E  I P +T HLE
Sbjct: 616 SDGQSRVKDIHLRKLLDGELDFDDFLKLGLVEYLDVNEENDSYIALYEKDIVPSMT-HLE 674

Query: 731 IAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNR 790
           I PFT+LG  AG              L+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ  R
Sbjct: 675 IEPFTILGAVAG--------------LIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKR 720

Query: 791 IDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
           IDTL+Y + Y Q+PMV++KTI + ++ KLPAG+
Sbjct: 721 IDTLLYLMTYPQQPMVKTKTIELIDYDKLPAGQ 753



 Score =  101 bits (252), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 49/113 (43%), Positives = 81/113 (71%), Gaps = 2/113 (1%)

Query: 421 TSSVTMHSQRTSPLLSCKKLRQKRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAM 480
           +S + +++Q+ +      K++  R Q  K T + +  + +++T IAH+ V  + F+ KA+
Sbjct: 290 SSKLDIYTQQQALEYIGAKVKTMRRQ--KLTILQEGIEAIATTVIAHLTVEALDFREKAL 347

Query: 481 YLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
           Y+A+M RR+V+A+ +P M+DDRDY GNKRLELAG L+SL+FED+FK+FN++ K
Sbjct: 348 YIAMMTRRVVMAMYNPKMIDDRDYVGNKRLELAGQLISLLFEDLFKKFNNDFK 400



 Score = 85.1 bits (209), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 37/59 (62%), Positives = 49/59 (83%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           DKW L+ +FLK KGLVK H+DSF+YF++ ++KK+++AN  I SDVDP FYLKY+DI VG
Sbjct: 43  DKWHLLPAFLKVKGLVKQHLDSFNYFVDTDLKKIIKANQLILSDVDPEFYLKYVDIRVG 101



 Score = 84.3 bits (207), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 37/56 (66%), Positives = 45/56 (80%)

Query: 356 TTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKTE 411
           T PHECRLRD+TYSAPI VDIEYTRG   ++  D+ IGRMPIML+S+KC+L +  E
Sbjct: 113 TPPHECRLRDMTYSAPIYVDIEYTRGRNIIMHKDVEIGRMPIMLRSNKCILYDADE 168


>gi|6324781|ref|NP_014850.1| Ret1p [Saccharomyces cerevisiae S288c]
 gi|2507350|sp|P22276.2|RPC2_YEAST RecName: Full=DNA-directed RNA polymerase III subunit RPC2; Short=RNA
            polymerase III subunit C2; AltName: Full=C128; AltName:
            Full=DNA-directed RNA polymerase III 130 kDa polypeptide
 gi|1420485|emb|CAA99422.1| RPC128 [Saccharomyces cerevisiae]
 gi|151945297|gb|EDN63540.1| RNA polymerase C [Saccharomyces cerevisiae YJM789]
 gi|256269629|gb|EEU04911.1| Ret1p [Saccharomyces cerevisiae JAY291]
 gi|259149688|emb|CAY86492.1| Ret1p [Saccharomyces cerevisiae EC1118]
 gi|285815086|tpg|DAA10979.1| TPA: Ret1p [Saccharomyces cerevisiae S288c]
 gi|392296534|gb|EIW07636.1| Ret1p [Saccharomyces cerevisiae CEN.PK113-7D]
          Length = 1149

 Score =  332 bits (852), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 155/266 (58%), Positives = 205/266 (77%), Gaps = 7/266 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ  RIDTL+Y + Y Q+PMV++KTI + +
Sbjct: 686  GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMTYPQQPMVKTKTIELID 745

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+AVMSYSGYDIEDAL++NK+S+DRGFGRC   R +  VLK+Y N T D 
Sbjct: 746  YDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCETRRKTTTVLKRYANHTQD- 804

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSA-----ISMAT 1087
            I+G +   +   P+++H++L  DG+   G ++   Q+ +NKS+PT S  A     +++ T
Sbjct: 805  IIGGMRVDENGDPIWQHQSLGPDGLGEVGMKVQSGQIYINKSVPTNSADAPNPNNVNVQT 864

Query: 1088 PEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
             +Y+E PV Y+G  PS++++V++S +  D  LIK+LLRQ RRPE+GDKFSSRHGQKGV G
Sbjct: 865  -QYREAPVIYRGPEPSHIDQVMMSVSDNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCG 923

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            +IV+QEDMPFN+ GI PDIIMNPHG 
Sbjct: 924  IIVKQEDMPFNDQGIVPDIIMNPHGF 949



 Score =  283 bits (724), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 127/193 (65%), Positives = 161/193 (83%)

Query: 1180 TEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1239
            T+Y+E PV Y+G  PS++++V++S +  D  LIK+LLRQ RRPE+GDKFSSRHGQKGV G
Sbjct: 864  TQYREAPVIYRGPEPSHIDQVMMSVSDNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCG 923

Query: 1240 LIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTK 1299
            +IV+QEDMPFN+ GI PDIIMNPHG+PSRMTVGK+IEL++GKAG++ G  + GT FGG+K
Sbjct: 924  IIVKQEDMPFNDQGIVPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGTLEYGTCFGGSK 983

Query: 1300 LVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPR 1359
            L D+ + L+  G+NY GKD+ YSGITGE L+AYI+ GP+YYQKLKHMV DK+HAR+RGPR
Sbjct: 984  LEDMSKILVDQGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPR 1043

Query: 1360 VVLTRQPTGRRWK 1372
             VLTRQPT  R +
Sbjct: 1044 AVLTRQPTEGRSR 1056



 Score =  188 bits (477), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 105/204 (51%), Positives = 141/204 (69%), Gaps = 9/204 (4%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPK-IKAAQFD--IV 189
           ID  DY  N  ++   Q  + ++ D   LF     D  + I DK++ K  +A ++D  + 
Sbjct: 366 IDDRDYVGNKRLELAGQLISLLFED---LFKKFNNDFKLSI-DKVLKKPNRAMEYDALLS 421

Query: 190 NHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
            ++  + IT+ L  AI TGNW+++RFKMER GVT VLSRLSYIS LGMMTRI+SQFEK+R
Sbjct: 422 INVHSNNITSGLNRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSR 481

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHI 309
           KVSGPR+LQ SQ+GMLC +DTPEGEACGLVKNLALMTHITT+++E+ + K+ Y +G+E I
Sbjct: 482 KVSGPRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEEEPIKKLCYVLGVEDI 541

Query: 310 AMFNGEELSSPGVYLVFVNGILAG 333
            + +   L     Y V++NG L G
Sbjct: 542 TLIDSASLHLN--YGVYLNGTLIG 563



 Score =  162 bits (411), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 83/153 (54%), Positives = 104/153 (67%), Gaps = 16/153 (10%)

Query: 672 SGCQPRPTFLNMHQFL-GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLE 730
           S  Q R   +++ + L G   FDDFL  G +EYLDVNE NDS+IA+ E  I P +T HLE
Sbjct: 616 SDGQSRVKDIHLRKLLDGELDFDDFLKLGLVEYLDVNEENDSYIALYEKDIVPSMT-HLE 674

Query: 731 IAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNR 790
           I PFT+LG  AG              L+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ  R
Sbjct: 675 IEPFTILGAVAG--------------LIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKR 720

Query: 791 IDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
           IDTL+Y + Y Q+PMV++KTI + ++ KLPAG+
Sbjct: 721 IDTLLYLMTYPQQPMVKTKTIELIDYDKLPAGQ 753



 Score =  101 bits (252), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 49/113 (43%), Positives = 81/113 (71%), Gaps = 2/113 (1%)

Query: 421 TSSVTMHSQRTSPLLSCKKLRQKRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAM 480
           +S + +++Q+ +      K++  R Q  K T + +  + +++T IAH+ V  + F+ KA+
Sbjct: 290 SSKLDIYTQQQALEYIGAKVKTMRRQ--KLTILQEGIEAIATTVIAHLTVEALDFREKAL 347

Query: 481 YLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
           Y+A+M RR+V+A+ +P M+DDRDY GNKRLELAG L+SL+FED+FK+FN++ K
Sbjct: 348 YIAMMTRRVVMAMYNPKMIDDRDYVGNKRLELAGQLISLLFEDLFKKFNNDFK 400



 Score = 85.1 bits (209), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/60 (61%), Positives = 50/60 (83%)

Query: 113 RDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           +DKW L+ +FLK KGLVK H+DSF+YF++ ++KK+++AN  I SDVDP FYLKY+DI VG
Sbjct: 42  QDKWHLLPAFLKVKGLVKQHLDSFNYFVDTDLKKIIKANQLILSDVDPEFYLKYVDIRVG 101



 Score = 84.3 bits (207), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 37/56 (66%), Positives = 45/56 (80%)

Query: 356 TTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKTE 411
           T PHECRLRD+TYSAPI VDIEYTRG   ++  D+ IGRMPIML+S+KC+L +  E
Sbjct: 113 TPPHECRLRDMTYSAPIYVDIEYTRGRNIIMHKDVEIGRMPIMLRSNKCILYDADE 168


>gi|403213510|emb|CCK68012.1| hypothetical protein KNAG_0A03250 [Kazachstania naganishii CBS 8797]
          Length = 1155

 Score =  332 bits (852), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 155/262 (59%), Positives = 201/262 (76%), Gaps = 2/262 (0%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ  RIDTL+Y + Y Q+PMV+SKTI + N
Sbjct: 695  GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMTYPQQPMVKSKTIELIN 754

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+AVMSYSGYDIEDAL++NK+S+DRGFGRC   R +  VLK+YPN T D 
Sbjct: 755  YDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCETRRKTTTVLKRYPNHTQD- 813

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT-PEYK 1091
            I+G +   +  + +++H AL  DG+   G ++   QV +NKS+PT S    S  T  +Y+
Sbjct: 814  IIGGMRVDENNERIWQHEALGPDGLGEVGMKLNSGQVYINKSVPTNSTEPFSGNTEAQYR 873

Query: 1092 EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVE 1151
            E PV Y+    S++++V++S +  D  LIK+LLRQ+RRPE+GDKFSSRHGQKGV G+IV+
Sbjct: 874  ETPVIYRAPESSHIDQVMMSVSDNDQALIKVLLRQSRRPELGDKFSSRHGQKGVCGIIVQ 933

Query: 1152 QEDMPFNESGICPDIIMNPHGL 1173
            QEDMPF++ G+ PDIIMNPHG 
Sbjct: 934  QEDMPFSDQGVVPDIIMNPHGF 955



 Score =  273 bits (699), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 121/193 (62%), Positives = 159/193 (82%)

Query: 1180 TEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1239
             +Y+E PV Y+    S++++V++S +  D  LIK+LLRQ+RRPE+GDKFSSRHGQKGV G
Sbjct: 870  AQYRETPVIYRAPESSHIDQVMMSVSDNDQALIKVLLRQSRRPELGDKFSSRHGQKGVCG 929

Query: 1240 LIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTK 1299
            +IV+QEDMPF++ G+ PDIIMNPHG+PSRMTVGK+IEL++GKAG++ G  + GT FGG+K
Sbjct: 930  IIVQQEDMPFSDQGVVPDIIMNPHGFPSRMTVGKMIELVSGKAGVLNGTLEYGTCFGGSK 989

Query: 1300 LVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPR 1359
            L D+ + L+  G+NY GKD+ YSG+TGE L+AYI+ GP+YYQKLKHMV DK+HAR+RGPR
Sbjct: 990  LEDMSKILVDQGFNYSGKDMLYSGVTGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPR 1049

Query: 1360 VVLTRQPTGRRWK 1372
             VLTRQPT  R +
Sbjct: 1050 AVLTRQPTEGRSR 1062



 Score =  191 bits (485), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 106/206 (51%), Positives = 142/206 (68%), Gaps = 9/206 (4%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPK-IKAAQFD--IV 189
           +D  DY  N  ++   Q  + ++ D   LF     D    I DK++ K  +A ++D  + 
Sbjct: 375 VDDRDYVGNKRLELAGQLISLLFED---LFKKFNHDFKTSI-DKVLKKPNRAMEYDALLS 430

Query: 190 NHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
            ++  + IT+ L  AI TGNW+++RFKMER GVT VLSRLSYIS LGMMTRI+SQFEK+R
Sbjct: 431 INVHSNNITSGLNRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSR 490

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHI 309
           KVSGPR+LQ SQ+GMLC +DTPEGEACGLVKNLALMTHITT+++E+ + K+ Y +G+E I
Sbjct: 491 KVSGPRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEEEPIKKLCYILGVEDI 550

Query: 310 AMFNGEELSSPGVYLVFVNGILAGIT 335
            + +   L     Y V++NG L GIT
Sbjct: 551 TVIDSASLHLN--YGVYLNGTLVGIT 574



 Score =  163 bits (413), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 78/132 (59%), Positives = 94/132 (71%), Gaps = 15/132 (11%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKR 751
           FDDFL  G +EYLDVNE NDS IA+ E  + P +T H+EI PFT+LG  AG         
Sbjct: 646 FDDFLKLGLVEYLDVNEENDSFIALYEKDLEPAIT-HMEIEPFTILGAVAG--------- 695

Query: 752 FHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTI 811
                L+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ  RIDTL+Y + Y Q+PMV+SKTI
Sbjct: 696 -----LIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMTYPQQPMVKSKTI 750

Query: 812 RITNFHKLPAGK 823
            + N+ KLPAG+
Sbjct: 751 ELINYDKLPAGQ 762



 Score = 99.0 bits (245), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 44/98 (44%), Positives = 72/98 (73%), Gaps = 5/98 (5%)

Query: 438 KKLRQKRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPD 497
           K +R+++  T     + +  + +++T +AH+ V  + F+ KA+Y+A+M RR+V+A+ +P 
Sbjct: 319 KTMRRQKLST-----LQEGIEAIATTVVAHLTVEALDFREKALYMAMMARRVVMAMYNPK 373

Query: 498 MLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELKET 535
           M+DDRDY GNKRLELAG L+SL+FED+FK+FN + K +
Sbjct: 374 MVDDRDYVGNKRLELAGQLISLLFEDLFKKFNHDFKTS 411



 Score = 86.7 bits (213), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 37/59 (62%), Positives = 50/59 (84%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           DKW L+ +FLK KGLVK H+DSF+YF++V++KK+++AN  I SDVDP FYLKY+DI +G
Sbjct: 52  DKWHLLPAFLKVKGLVKQHLDSFNYFVDVDLKKIIKANELILSDVDPEFYLKYVDIRIG 110



 Score = 84.0 bits (206), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 37/56 (66%), Positives = 44/56 (78%)

Query: 356 TTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKTE 411
           T PHECRLRD+TYSAPI VDIEYTRG   ++  D+ IGRMPIML+S+KC+L    E
Sbjct: 122 TPPHECRLRDMTYSAPIYVDIEYTRGRNIIMHKDVEIGRMPIMLRSNKCILSETNE 177


>gi|190407518|gb|EDV10785.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Saccharomyces
            cerevisiae RM11-1a]
          Length = 881

 Score =  332 bits (851), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 155/266 (58%), Positives = 205/266 (77%), Gaps = 7/266 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ  RIDTL+Y + Y Q+PMV++KTI + +
Sbjct: 418  GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMTYPQQPMVKTKTIELID 477

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+AVMSYSGYDIEDAL++NK+S+DRGFGRC   R +  VLK+Y N T D 
Sbjct: 478  YDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCETRRKTTTVLKRYANHTQD- 536

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSA-----ISMAT 1087
            I+G +   +   P+++H++L  DG+   G ++   Q+ +NKS+PT S  A     +++ T
Sbjct: 537  IIGGMRVDENGDPIWQHQSLGPDGLGEVGMKVQSGQIYINKSVPTNSADAPNPNNVNVQT 596

Query: 1088 PEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
             +Y+E PV Y+G  PS++++V++S +  D  LIK+LLRQ RRPE+GDKFSSRHGQKGV G
Sbjct: 597  -QYREAPVIYRGPEPSHIDQVMMSVSDNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCG 655

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            +IV+QEDMPFN+ GI PDIIMNPHG 
Sbjct: 656  IIVKQEDMPFNDQGIVPDIIMNPHGF 681



 Score =  283 bits (724), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 127/193 (65%), Positives = 161/193 (83%)

Query: 1180 TEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1239
            T+Y+E PV Y+G  PS++++V++S +  D  LIK+LLRQ RRPE+GDKFSSRHGQKGV G
Sbjct: 596  TQYREAPVIYRGPEPSHIDQVMMSVSDNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCG 655

Query: 1240 LIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTK 1299
            +IV+QEDMPFN+ GI PDIIMNPHG+PSRMTVGK+IEL++GKAG++ G  + GT FGG+K
Sbjct: 656  IIVKQEDMPFNDQGIVPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGTLEYGTCFGGSK 715

Query: 1300 LVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPR 1359
            L D+ + L+  G+NY GKD+ YSGITGE L+AYI+ GP+YYQKLKHMV DK+HAR+RGPR
Sbjct: 716  LEDMSKILVDQGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPR 775

Query: 1360 VVLTRQPTGRRWK 1372
             VLTRQPT  R +
Sbjct: 776  AVLTRQPTEGRSR 788



 Score =  188 bits (477), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 105/204 (51%), Positives = 141/204 (69%), Gaps = 9/204 (4%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPK-IKAAQFD--IV 189
           ID  DY  N  ++   Q  + ++ D   LF     D  + I DK++ K  +A ++D  + 
Sbjct: 98  IDDRDYVGNKRLELAGQLISLLFED---LFKKFNNDFKLSI-DKVLKKPNRAMEYDALLS 153

Query: 190 NHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
            ++  + IT+ L  AI TGNW+++RFKMER GVT VLSRLSYIS LGMMTRI+SQFEK+R
Sbjct: 154 INVHSNNITSGLNRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSR 213

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHI 309
           KVSGPR+LQ SQ+GMLC +DTPEGEACGLVKNLALMTHITT+++E+ + K+ Y +G+E I
Sbjct: 214 KVSGPRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEEEPIKKLCYVLGVEDI 273

Query: 310 AMFNGEELSSPGVYLVFVNGILAG 333
            + +   L     Y V++NG L G
Sbjct: 274 TLIDSASLHLN--YGVYLNGTLIG 295



 Score =  162 bits (409), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 83/153 (54%), Positives = 104/153 (67%), Gaps = 16/153 (10%)

Query: 672 SGCQPRPTFLNMHQFL-GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLE 730
           S  Q R   +++ + L G   FDDFL  G +EYLDVNE NDS+IA+ E  I P +T HLE
Sbjct: 348 SDGQSRVKDIHLRKLLDGELDFDDFLKLGLVEYLDVNEENDSYIALYEKDIVPSMT-HLE 406

Query: 731 IAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNR 790
           I PFT+LG  AG              L+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ  R
Sbjct: 407 IEPFTILGAVAG--------------LIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKR 452

Query: 791 IDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
           IDTL+Y + Y Q+PMV++KTI + ++ KLPAG+
Sbjct: 453 IDTLLYLMTYPQQPMVKTKTIELIDYDKLPAGQ 485



 Score =  102 bits (253), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 49/113 (43%), Positives = 81/113 (71%), Gaps = 2/113 (1%)

Query: 421 TSSVTMHSQRTSPLLSCKKLRQKRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAM 480
           +S + +++Q+ +      K++  R Q  K T + +  + +++T IAH+ V  + F+ KA+
Sbjct: 22  SSKLDIYTQQQALEYIGAKVKTMRRQ--KLTILQEGIEAIATTVIAHLTVEALDFREKAL 79

Query: 481 YLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
           Y+A+M RR+V+A+ +P M+DDRDY GNKRLELAG L+SL+FED+FK+FN++ K
Sbjct: 80  YIAMMTRRVVMAMYNPKMIDDRDYVGNKRLELAGQLISLLFEDLFKKFNNDFK 132


>gi|331225399|ref|XP_003325370.1| DNA-directed RNA polymerase III subunit RPC2 [Puccinia graminis f.
            sp. tritici CRL 75-36-700-3]
 gi|309304360|gb|EFP80951.1| DNA-directed RNA polymerase III subunit RPC2 [Puccinia graminis f.
            sp. tritici CRL 75-36-700-3]
          Length = 1272

 Score =  332 bits (851), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 155/265 (58%), Positives = 198/265 (74%), Gaps = 5/265 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ +RIDTL+Y +VY   PMV +KTI +  
Sbjct: 810  GLIPYPHHNQSPRNTYQCAMGKQAIGVIAYNQLHRIDTLLYLMVYPHHPMVRTKTIELVG 869

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+AVMSYSGYDIEDALI+NKASLDRGFGRC V+R +  ++K+YPN T+DR
Sbjct: 870  YDKLPAGQNATVAVMSYSGYDIEDALILNKASLDRGFGRCQVFRKATAMIKRYPNGTYDR 929

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPT----ISVSAISMATP 1088
            I  P  + + +  + + +  D  G+   G ++    V +NK  P+     SV A +    
Sbjct: 930  IADPPRDPEGQV-LEKWKPCDDGGVADVGMKVYNGNVYINKQSPSNANDNSVGAGAATVT 988

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
             +   P++Y+G+VPSY++KV+V+    D  L+K+LLRQTRRPE+GDKFSSRHGQKGV GL
Sbjct: 989  SWANTPMTYRGTVPSYIDKVMVTDTESDQTLVKVLLRQTRRPELGDKFSSRHGQKGVCGL 1048

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            IV+QEDMPFN+ G CPDIIMNPHG 
Sbjct: 1049 IVQQEDMPFNDRGTCPDIIMNPHGF 1073



 Score =  286 bits (733), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 128/196 (65%), Positives = 161/196 (82%)

Query: 1175 GCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQ 1234
            G   +T +   P++Y+G+VPSY++KV+V+    D  L+K+LLRQTRRPE+GDKFSSRHGQ
Sbjct: 983  GAATVTSWANTPMTYRGTVPSYIDKVMVTDTESDQTLVKVLLRQTRRPELGDKFSSRHGQ 1042

Query: 1235 KGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTA 1294
            KGV GLIV+QEDMPFN+ G CPDIIMNPHG+PSRMTVGK++ELL+GKAG++ G  + GTA
Sbjct: 1043 KGVCGLIVQQEDMPFNDRGTCPDIIMNPHGFPSRMTVGKMLELLSGKAGVLRGTVEYGTA 1102

Query: 1295 FGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHAR 1354
            FGG+K V++ + LI HGY+Y GKD   SGITG+ LE Y++ GP+YYQKLKHMV DK+HAR
Sbjct: 1103 FGGSKAVEMSKILIEHGYSYLGKDYLTSGITGQPLEHYVFMGPIYYQKLKHMVLDKMHAR 1162

Query: 1355 SRGPRVVLTRQPTGRR 1370
            +RGPR VLTRQPT  R
Sbjct: 1163 ARGPRAVLTRQPTEGR 1178



 Score =  221 bits (562), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 115/206 (55%), Positives = 143/206 (69%), Gaps = 7/206 (3%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKI-KAAQFDIVNH 191
           +D  DY  N  ++   Q  + ++ D   LF     D+ + I DK++ K  +  +FD +N 
Sbjct: 488 VDDRDYVGNKRLELAGQLLSLLFED---LFKKFNTDLKLNI-DKVLKKPNRTTEFDAINQ 543

Query: 192 MRQ--DTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
            R   D I+N    AI TGNW+I+RFKMER G+T VLSRLSYIS LGMMTRI+SQFEKTR
Sbjct: 544 FRMHADHISNGFIRAISTGNWSIKRFKMERAGITHVLSRLSYISALGMMTRISSQFEKTR 603

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHI 309
           KVSGPR+LQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT+ DE+ +  + Y IG E I
Sbjct: 604 KVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDTDEEPIWNVAYTIGCEDI 663

Query: 310 AMFNGEELSSPGVYLVFVNGILAGIT 335
           +   G EL  P  Y+VF+NG + G+T
Sbjct: 664 SSVTGTELYLPRHYIVFINGNILGLT 689



 Score =  158 bits (399), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 79/132 (59%), Positives = 91/132 (68%), Gaps = 15/132 (11%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKR 751
           FDDFL +G IEYLD NE NDS IA+ E  I    TTHLEI PFTLLG  AG         
Sbjct: 761 FDDFLSQGLIEYLDCNEENDSFIALYEEDID-SYTTHLEIEPFTLLGAVAG--------- 810

Query: 752 FHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTI 811
                L+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ +RIDTL+Y +VY   PMV +KTI
Sbjct: 811 -----LIPYPHHNQSPRNTYQCAMGKQAIGVIAYNQLHRIDTLLYLMVYPHHPMVRTKTI 865

Query: 812 RITNFHKLPAGK 823
            +  + KLPAG+
Sbjct: 866 ELVGYDKLPAGQ 877



 Score =  107 bits (267), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 49/98 (50%), Positives = 73/98 (74%)

Query: 436 SCKKLRQKRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSD 495
           S K +++      K+   ++A + LS+  +AH+P  N+  + KA+YLAVM RR+V A+++
Sbjct: 425 SVKMVKKGPVAGPKRPLTEEALEVLSTVVLAHVPADNLNLQPKAIYLAVMARRVVQAMAN 484

Query: 496 PDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
           P ++DDRDY GNKRLELAG LLSL+FED+FK+FN++LK
Sbjct: 485 PKLVDDRDYVGNKRLELAGQLLSLLFEDLFKKFNTDLK 522



 Score = 82.8 bits (203), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/58 (60%), Positives = 50/58 (86%)

Query: 354 RQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKTE 411
           ++ TPHECRLRD+TYSAPI+V I+YT+G++RV+   + IGR+PIML+S+KCVL  K++
Sbjct: 228 KRITPHECRLRDITYSAPISVTIQYTKGNKRVLSKGIPIGRIPIMLRSNKCVLTGKSD 285



 Score = 73.6 bits (179), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 31/61 (50%), Positives = 47/61 (77%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           + DKW+L+ +F K K L K H+D F+YF +V+++ +++ANA + SDVDP F+L YLDI+V
Sbjct: 155 VEDKWQLLPAFFKGKRLGKQHLDLFNYFGDVDLQSILRANATVISDVDPNFHLSYLDINV 214

Query: 172 G 172
           G
Sbjct: 215 G 215


>gi|388581064|gb|EIM21375.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
            [Wallemia sebi CBS 633.66]
          Length = 1152

 Score =  332 bits (850), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 156/265 (58%), Positives = 197/265 (74%), Gaps = 5/265 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ NRIDTL+Y +VY Q+PMV++KTI +  
Sbjct: 691  GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLNRIDTLLYLMVYPQQPMVKTKTIELIG 750

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNA +AVMSYSGYDIEDALI+NKASLDRGFGRC V R    ++++YPN THDR
Sbjct: 751  YDKLPAGQNAMVAVMSYSGYDIEDALILNKASLDRGFGRCQVMRKYSTMIRKYPNGTHDR 810

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPT----ISVSAISMATP 1088
            +    +  D   P  +++AL+ DGI   GE++    V+VNK  P+     S++     + 
Sbjct: 811  LADAPIGLDGVIP-KKYQALEPDGIAGAGERVDTNDVIVNKQSPSNALDNSINPGQADSS 869

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
             YK  P+SYK  VP ++++VL++    +  L+K LLRQTRRPE+GDKFSSRHGQKGV GL
Sbjct: 870  TYKNAPMSYKSPVPGFVDQVLITDTESEQTLVKALLRQTRRPELGDKFSSRHGQKGVCGL 929

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            IV Q DMPFN+ GI PD+IMNPHG 
Sbjct: 930  IVPQADMPFNDRGITPDVIMNPHGF 954



 Score =  265 bits (677), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 122/191 (63%), Positives = 151/191 (79%)

Query: 1180 TEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1239
            + YK  P+SYK  VP ++++VL++    +  L+K LLRQTRRPE+GDKFSSRHGQKGV G
Sbjct: 869  STYKNAPMSYKSPVPGFVDQVLITDTESEQTLVKALLRQTRRPELGDKFSSRHGQKGVCG 928

Query: 1240 LIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTK 1299
            LIV Q DMPFN+ GI PD+IMNPHG+PSRMTVGK+IELL+GKAG++ G  + GTAFGG+K
Sbjct: 929  LIVPQADMPFNDRGITPDVIMNPHGFPSRMTVGKMIELLSGKAGVIRGTLEYGTAFGGSK 988

Query: 1300 LVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPR 1359
            + D+ + LI +GY+Y GK+   SGITGE    Y Y GP+YYQKLKHMV DK+HAR+RGPR
Sbjct: 989  VDDMSQVLIDNGYSYAGKETMTSGITGECHTFYTYLGPIYYQKLKHMVLDKMHARARGPR 1048

Query: 1360 VVLTRQPTGRR 1370
             VLTRQPT  R
Sbjct: 1049 AVLTRQPTEGR 1059



 Score =  208 bits (530), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 114/224 (50%), Positives = 150/224 (66%), Gaps = 12/224 (5%)

Query: 117 KLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADK 176
           +++++ + EK L     D  DY  N  ++   Q  + ++ D   LF     D+ + I DK
Sbjct: 358 RVLMAMVDEKML-----DDRDYVGNKRLELAGQLLSLLFED---LFKKFNHDLKLNI-DK 408

Query: 177 IIPKI-KAAQFDIVNHMRQ--DTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYIS 233
           ++ K  +  +FD    +    D IT+    AI TGNW+++RFKMER GVT VLSRLSYIS
Sbjct: 409 VLKKPNRTTEFDAYTQLLYGGDHITSGFVRAISTGNWSLKRFKMERAGVTHVLSRLSYIS 468

Query: 234 GLGMMTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTEND 293
            LGMMTRI+SQFEKTRKVSGPR+LQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT+ +
Sbjct: 469 ALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDVE 528

Query: 294 EKNMLKIMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAGITCH 337
           E+ ++ I Y +G+E + +  G EL     Y+V +NG L G+T H
Sbjct: 529 EEPIVNICYMLGVEDVCLLTGTELYRRDTYIVSLNGNLIGVTRH 572



 Score =  168 bits (426), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 80/132 (60%), Positives = 98/132 (74%), Gaps = 15/132 (11%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKR 751
           FD FL +G +EYLDVNE ND++IA+SE+ I    +THLEI PFTLLG CAG         
Sbjct: 642 FDAFLTQGLVEYLDVNEENDAYIAISENDITE-TSTHLEIEPFTLLGACAG--------- 691

Query: 752 FHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTI 811
                L+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ NRIDTL+Y +VY Q+PMV++KTI
Sbjct: 692 -----LIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLNRIDTLLYLMVYPQQPMVKTKTI 746

Query: 812 RITNFHKLPAGK 823
            +  + KLPAG+
Sbjct: 747 ELIGYDKLPAGQ 758



 Score =  113 bits (282), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 54/97 (55%), Positives = 75/97 (77%), Gaps = 1/97 (1%)

Query: 438 KKLRQKRFQTYKKTPV-DDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDP 496
           K  R+     ++K PV +DA + LS+  +AH+PV N+ F+ KA+Y+AVM+RR+++A+ D 
Sbjct: 307 KSARRAVGPAHQKRPVWEDAIETLSTIVLAHVPVENLNFRPKAIYVAVMVRRVLMAMVDE 366

Query: 497 DMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
            MLDDRDY GNKRLELAG LLSL+FED+FK+FN +LK
Sbjct: 367 KMLDDRDYVGNKRLELAGQLLSLLFEDLFKKFNHDLK 403



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/96 (46%), Positives = 63/96 (65%), Gaps = 10/96 (10%)

Query: 77  RLTVQPNWLGTVKAVHGTYLTMVTDETSKLKDSPEIRDKWKLVLSFLKEKGLVKPHIDSF 136
           ++T   +W  T    HG  LT   DE         + DKW+L+ +FLK +GLVK HIDS+
Sbjct: 12  KITESDDWT-TPGNFHGKSLT---DEVKT------VEDKWQLLPAFLKTRGLVKQHIDSY 61

Query: 137 DYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           ++F++VE+K +++AN  + SDVDP FYLKY DIHVG
Sbjct: 62  NHFVDVELKNIIKANEKVTSDVDPKFYLKYTDIHVG 97



 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 39/78 (50%), Positives = 54/78 (69%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQ 400
           V  PE +++ +  +  TPHE RLRD+TYSAPI + +EYTRG Q V R  + IGR+P+ML+
Sbjct: 96  VGNPERQDADSVDKSITPHEARLRDMTYSAPIRISVEYTRGKQIVRRRGIPIGRLPVMLR 155

Query: 401 SSKCVLRNKTEYTSSSRR 418
           S+KC+L  K E T +  R
Sbjct: 156 SNKCILSGKDEETLARYR 173


>gi|340517820|gb|EGR48063.1| predicted protein [Trichoderma reesei QM6a]
          Length = 1158

 Score =  331 bits (849), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 152/266 (57%), Positives = 201/266 (75%), Gaps = 5/266 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+P+PHHNQ+PRNTYQCAMGKQA+G I +NQ NRIDTL+Y LVY QRPMV +KTI++ +
Sbjct: 689  GLIPFPHHNQSPRNTYQCAMGKQAIGAIAHNQFNRIDTLLYTLVYPQRPMVITKTIQLIH 748

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+ VMSYSGYDIEDAL++NKAS+DRGFGRC V+R     L++YPN   +R
Sbjct: 749  YDKLPAGQNATVVVMSYSGYDIEDALVLNKASIDRGFGRCQVFRKYTTELQKYPNGRRER 808

Query: 1033 ILGPL--LEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMP---TISVSAISMAT 1087
            I  P+  +E    + + +H ALD DG+   G++I   + +V K  P   T +   +    
Sbjct: 809  IGDPVNEIENGVMRRIKKHEALDADGLAVVGQRIHSGEAMVKKETPLDMTTTGIGLDRGP 868

Query: 1088 PEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
             EY++  VSY+ + P+Y++KV++S   +D  +IK+  RQTRRPE+GDKFSSRHGQKGV+G
Sbjct: 869  SEYRDTAVSYRIADPAYIDKVMISQTEKDTTVIKVQTRQTRRPELGDKFSSRHGQKGVVG 928

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            +IV+QEDMPF +SG+CPDIIMNPHG 
Sbjct: 929  IIVDQEDMPFADSGLCPDIIMNPHGF 954



 Score =  262 bits (670), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 121/201 (60%), Positives = 160/201 (79%), Gaps = 3/201 (1%)

Query: 1175 GCDR-ITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
            G DR  +EY++  VSY+ + P+Y++KV++S   +D  +IK+  RQTRRPE+GDKFSSRHG
Sbjct: 863  GLDRGPSEYRDTAVSYRIADPAYIDKVMISQTEKDTTVIKVQTRQTRRPELGDKFSSRHG 922

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEG--NYKE 1291
            QKGV+G+IV+QEDMPF +SG+CPDIIMNPHG+PSRMTVGKL+E L GKA ++ G   Y  
Sbjct: 923  QKGVVGIIVDQEDMPFADSGLCPDIIMNPHGFPSRMTVGKLLECLTGKASIVHGRKEYGF 982

Query: 1292 GTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKI 1351
            G AF    +  V + L+ HG++++GKD F SGITGE LEAYI++GP+YYQ+LKHMVQDK+
Sbjct: 983  GDAFRSHPVEQVSKVLVDHGFSWEGKDYFTSGITGEPLEAYIFNGPIYYQRLKHMVQDKM 1042

Query: 1352 HARSRGPRVVLTRQPTGRRWK 1372
            H+R+RGPR +LTRQPT  R +
Sbjct: 1043 HSRARGPRAILTRQPTEGRSR 1063



 Score =  193 bits (490), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 108/213 (50%), Positives = 142/213 (66%), Gaps = 11/213 (5%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKI-KAAQFDIVNH 191
           +D  D+  N  ++   Q  + ++ D   LF     ++ + I DK + K  +A   D V H
Sbjct: 365 VDDRDFVGNKRLELAGQLLSLLFED---LFKRFMSEVKMSI-DKFLKKNNRAVPLDAV-H 419

Query: 192 M---RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKT 248
           M     ++I   +  AIQ+GNWT++RF M R GVT VLSRLSYIS LGMMTRI+SQFEKT
Sbjct: 420 MISNHANSIGLGINRAIQSGNWTVKRFNMNRAGVTHVLSRLSYISALGMMTRISSQFEKT 479

Query: 249 RKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMY--NIGI 306
           RKVSGPR+LQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT  DE  +++ ++  ++G+
Sbjct: 480 RKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTNVDEAPVMRWIFTLDVGV 539

Query: 307 EHIAMFNGEELSSPGVYLVFVNGILAGITCHHK 339
           E I  F+G E+   G Y++ VNG    +T + K
Sbjct: 540 EPIRNFSGAEMHREGSYIIHVNGTPFALTRYPK 572



 Score =  162 bits (411), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 83/147 (56%), Positives = 102/147 (69%), Gaps = 16/147 (10%)

Query: 677 RPTFLNMHQFLGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTL 736
           +P  L + Q LG   FDDFL +G +EYLDVNE ND+ I + E  +    TTHLEI PFTL
Sbjct: 626 KPEHLRLLQ-LGKVTFDDFLTKGIVEYLDVNEENDALITIYEDQVTMS-TTHLEIEPFTL 683

Query: 737 LGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMY 796
           LG  AG              L+P+PHHNQ+PRNTYQCAMGKQA+G I +NQ NRIDTL+Y
Sbjct: 684 LGAVAG--------------LIPFPHHNQSPRNTYQCAMGKQAIGAIAHNQFNRIDTLLY 729

Query: 797 NLVYAQRPMVESKTIRITNFHKLPAGK 823
            LVY QRPMV +KTI++ ++ KLPAG+
Sbjct: 730 TLVYPQRPMVITKTIQLIHYDKLPAGQ 756



 Score =  102 bits (254), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 53/130 (40%), Positives = 83/130 (63%), Gaps = 3/130 (2%)

Query: 407 RNKTEYTSSSRRASTSSVTMHSQRTSPLLSCKKLRQKRFQ---TYKKTPVDDARDFLSST 463
           R + E+  +   A+ + +    Q    + S  K+  K+ Q     ++  V++  D L++ 
Sbjct: 270 RYQDEFLVNFDEAAKAGIFTQQQALEYIGSRVKMGSKKGQFGAQARRNNVEEGLDALANL 329

Query: 464 CIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGSLLSLMFED 523
            IAH+P+  + F  KA+Y+A+M RR+++A  DP ++DDRD+ GNKRLELAG LLSL+FED
Sbjct: 330 IIAHVPIEGLDFYPKAIYVAMMTRRVLMASQDPKLVDDRDFVGNKRLELAGQLLSLLFED 389

Query: 524 VFKRFNSELK 533
           +FKRF SE+K
Sbjct: 390 LFKRFMSEVK 399



 Score = 73.9 bits (180), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 31/52 (59%), Positives = 41/52 (78%)

Query: 355 QTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVL 406
           + TP ECRLRD+TY+API VDI Y R  Q++VR ++ +GRMP+ML+S KC L
Sbjct: 104 EVTPMECRLRDMTYAAPIFVDIAYIRDKQKIVRKNVPLGRMPVMLKSCKCRL 155



 Score = 59.7 bits (143), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/59 (49%), Positives = 44/59 (74%), Gaps = 1/59 (1%)

Query: 114 DKWKLVLSFLKEKGL-VKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           DK++L+ +FLK KGL    HIDS+++F+  EIK++++AN  I SDVD  F+L++ DI V
Sbjct: 30  DKFQLLPAFLKVKGLSCARHIDSYNFFVEHEIKEIVRANRTIRSDVDSNFWLEFTDIRV 88


>gi|255713708|ref|XP_002553136.1| KLTH0D09812p [Lachancea thermotolerans]
 gi|238934516|emb|CAR22698.1| KLTH0D09812p [Lachancea thermotolerans CBS 6340]
          Length = 1144

 Score =  331 bits (848), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 151/262 (57%), Positives = 203/262 (77%), Gaps = 2/262 (0%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ  RIDTL+Y ++Y Q+PMV++KTI + +
Sbjct: 684  GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMIYPQQPMVKTKTIELID 743

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+AVMSYSGYDIEDAL++NK+S+DRGFGRC   R    VLK+YPN T D 
Sbjct: 744  YDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCETRRKLTTVLKRYPNHTQD- 802

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPT-ISVSAISMATPEYK 1091
            ++G +   ++ +P+++H+ L  DG+   G ++   Q+ VNKS+PT  S S ++ +  +Y+
Sbjct: 803  MVGGMRVDESGEPIWQHKPLGPDGLGEVGMKVESGQIYVNKSVPTNASDSVLTQSQAQYR 862

Query: 1092 EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVE 1151
            E PV Y+   PS++++V++S +  D  LIK+LLRQ RRPE+GDKFSSRHGQKGV G+IV 
Sbjct: 863  ETPVVYRAPEPSHIDQVMMSVSENDQALIKVLLRQNRRPELGDKFSSRHGQKGVCGIIVN 922

Query: 1152 QEDMPFNESGICPDIIMNPHGL 1173
             ED+PFN+ G+ PDIIMNPHG 
Sbjct: 923  HEDLPFNDQGVVPDIIMNPHGF 944



 Score =  277 bits (709), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 122/193 (63%), Positives = 159/193 (82%)

Query: 1180 TEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1239
             +Y+E PV Y+   PS++++V++S +  D  LIK+LLRQ RRPE+GDKFSSRHGQKGV G
Sbjct: 859  AQYRETPVVYRAPEPSHIDQVMMSVSENDQALIKVLLRQNRRPELGDKFSSRHGQKGVCG 918

Query: 1240 LIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTK 1299
            +IV  ED+PFN+ G+ PDIIMNPHG+PSRMTVGK+IEL++GKAG++ G+ + GT FGG+K
Sbjct: 919  IIVNHEDLPFNDQGVVPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGSLEYGTCFGGSK 978

Query: 1300 LVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPR 1359
            L ++ + L+ HG+NY GKD+ YSGITGE L+AYI+ GP+YYQKLKHMV DK+HAR+RGPR
Sbjct: 979  LENMSQILVNHGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPR 1038

Query: 1360 VVLTRQPTGRRWK 1372
             VLTRQPT  R +
Sbjct: 1039 AVLTRQPTEGRSR 1051



 Score =  186 bits (473), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 99/205 (48%), Positives = 143/205 (69%), Gaps = 9/205 (4%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPK-IKAAQFD--IV 189
           +D  DY  N  ++   Q  + ++ D+    + K+ +      DK++ K  +A ++D  + 
Sbjct: 364 VDDRDYVGNKRLELAGQLMSLLFEDL----FKKFNNDFKANIDKVLKKPNRAMEYDALLS 419

Query: 190 NHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
            ++  + I++ L  AI TGNW+++RFKMER GVT VLSRLSYIS LGMMTRI+SQFEK+R
Sbjct: 420 INVHSNNISSGLNRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSR 479

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHI 309
           KVSGPR+LQ SQ+GMLC SDTPEGEACGLVKNLALMTHITT+++E+ + K+ + +G+E I
Sbjct: 480 KVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTDDEEEPIKKLCFLLGVECI 539

Query: 310 AMFNGEELSSPGVYLVFVNGILAGI 334
            + + + L     Y V++NG + G+
Sbjct: 540 NVVDSDSLHLN--YCVYLNGTIVGV 562



 Score =  162 bits (410), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 81/146 (55%), Positives = 102/146 (69%), Gaps = 16/146 (10%)

Query: 679 TFLNMHQFL-GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLL 737
           T  ++ Q L G  +FDDFL  G +EYLDVNE NDS IA+ E  + P +T HLEI PFT+L
Sbjct: 621 TAQHLRQLLDGHLQFDDFLKLGLVEYLDVNEENDSFIALYERDLEPRIT-HLEIEPFTVL 679

Query: 738 GVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYN 797
           G  AG              L+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ  RIDTL+Y 
Sbjct: 680 GAVAG--------------LIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYL 725

Query: 798 LVYAQRPMVESKTIRITNFHKLPAGK 823
           ++Y Q+PMV++KTI + ++ KLPAG+
Sbjct: 726 MIYPQQPMVKTKTIELIDYDKLPAGQ 751



 Score =  101 bits (252), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 46/96 (47%), Positives = 72/96 (75%), Gaps = 5/96 (5%)

Query: 438 KKLRQKRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPD 497
           K +R+++  T     + +  + +++T IAH+ V  + F+ KA+Y+AVM RR+V+A+ +P 
Sbjct: 308 KTVRRQKLST-----LQEGIEAIATTVIAHLTVEALDFREKALYIAVMTRRVVMAMHNPK 362

Query: 498 MLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
           M+DDRDY GNKRLELAG L+SL+FED+FK+FN++ K
Sbjct: 363 MVDDRDYVGNKRLELAGQLMSLLFEDLFKKFNNDFK 398



 Score = 87.0 bits (214), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 38/59 (64%), Positives = 50/59 (84%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           DKW L+ +FLK KGLVK H+DSF+YF++V++KK+++AN  I SDVDP FYLKY+DI VG
Sbjct: 41  DKWNLLPAFLKVKGLVKQHLDSFNYFVDVDLKKIIKANQLILSDVDPEFYLKYVDIRVG 99



 Score = 82.8 bits (203), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/54 (64%), Positives = 44/54 (81%)

Query: 358 PHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKTE 411
           PHECRLRD+TYSAP+ VDIEYTRG   ++  D+ IGRMPIML+S+KC+L   +E
Sbjct: 113 PHECRLRDMTYSAPVYVDIEYTRGRNIIMHRDVEIGRMPIMLRSNKCILNGASE 166


>gi|260945433|ref|XP_002617014.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Clavispora
            lusitaniae ATCC 42720]
 gi|238848868|gb|EEQ38332.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Clavispora
            lusitaniae ATCC 42720]
          Length = 1159

 Score =  330 bits (847), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 156/267 (58%), Positives = 199/267 (74%), Gaps = 7/267 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ  RIDTL+Y +VY Q+PMV+SKTI +  
Sbjct: 696  GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFRRIDTLLYFMVYPQQPMVKSKTIELIE 755

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+AVMSYSGYDIEDAL++NK+S+DRGFGRC V R +  VLK+YPN T D 
Sbjct: 756  YDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCQVVRKNTIVLKRYPNHTKDI 815

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAI------SMA 1086
            + G  ++ +   P++ H AL  DG+   G +I   QV  NK +PT +  ++        +
Sbjct: 816  VAGMRVD-ENGDPIFAHNALGPDGLGEVGMRIENGQVYANKQVPTNAGESVLGDHNQPQS 874

Query: 1087 TPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVI 1146
               ++E P  Y+G  PSY+++V++S +  D  LIK+LLRQTRRPE+GDKFSSRHGQKGV 
Sbjct: 875  AESHRETPAYYRGPEPSYVDQVMMSVSDNDQALIKVLLRQTRRPELGDKFSSRHGQKGVC 934

Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G+IV+ EDMPFN+ GI PDIIMNPHG 
Sbjct: 935  GIIVQHEDMPFNDMGISPDIIMNPHGF 961



 Score =  279 bits (713), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 126/191 (65%), Positives = 158/191 (82%)

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
            ++E P  Y+G  PSY+++V++S +  D  LIK+LLRQTRRPE+GDKFSSRHGQKGV G+I
Sbjct: 878  HRETPAYYRGPEPSYVDQVMMSVSDNDQALIKVLLRQTRRPELGDKFSSRHGQKGVCGII 937

Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
            V+ EDMPFN+ GI PDIIMNPHG+PSRMTVGK+IEL++GKAG++ G  + GT FGG+KL 
Sbjct: 938  VQHEDMPFNDMGISPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGTLEYGTCFGGSKLE 997

Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
            D+ + L+  G+NY GKD+ YSGITGE L+AYI+ GP+YYQKLKHMV DK+HARSRGPR V
Sbjct: 998  DMSKILVDKGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARSRGPRAV 1057

Query: 1362 LTRQPTGRRWK 1372
            LTRQPT  R +
Sbjct: 1058 LTRQPTEGRSR 1068



 Score =  193 bits (490), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 108/225 (48%), Positives = 148/225 (65%), Gaps = 11/225 (4%)

Query: 118 LVLSFLKEKGLVKPH----IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGI 173
           L ++ +  K L+  H    +D  DY  N  ++   Q  + ++ D   LF     D    I
Sbjct: 349 LYIAIMARKVLMTMHNPSMVDDRDYVGNKRLELAGQLMSLLFED---LFKKFNTDFKANI 405

Query: 174 ADKIIPK-IKAAQFD--IVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLS 230
            DKI+ K  + ++FD  +  ++  + IT  +  AI TGNW+++RFKMER GVT VLSRLS
Sbjct: 406 -DKILKKPSRTSEFDALLSINIHSNNITMGMNRAISTGNWSLKRFKMERAGVTHVLSRLS 464

Query: 231 YISGLGMMTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITT 290
           YIS LGMMTRI+SQFEK+RKVSGPR+LQ SQ+GMLC SDTPEGEACGLVKNLALMTHITT
Sbjct: 465 YISALGMMTRISSQFEKSRKVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITT 524

Query: 291 ENDEKNMLKIMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAGIT 335
           +++E+ + ++ + +G E I   +   + + G Y VF+NG + G T
Sbjct: 525 DDEEEPIKRLCFILGCEDIYSIDSATIYTEGNYGVFLNGTMVGTT 569



 Score =  156 bits (395), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 84/153 (54%), Positives = 102/153 (66%), Gaps = 18/153 (11%)

Query: 675 QPRPTFLNMHQFL-GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGI--RPGVT-THLE 730
           QPR    ++ + L G   FDDFL  G +EYLDVNE NDS IA+ E  +   P +  THLE
Sbjct: 625 QPRVEAHHLKKLLSGDWVFDDFLKYGLVEYLDVNEENDSLIALYEKDMAENPHLRFTHLE 684

Query: 731 IAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNR 790
           I PFT+LG  AG              L+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ  R
Sbjct: 685 IEPFTVLGAVAG--------------LIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFRR 730

Query: 791 IDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
           IDTL+Y +VY Q+PMV+SKTI +  + KLPAG+
Sbjct: 731 IDTLLYFMVYPQQPMVKSKTIELIEYDKLPAGQ 763



 Score = 99.0 bits (245), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 44/114 (38%), Positives = 81/114 (71%), Gaps = 1/114 (0%)

Query: 421 TSSVTMHSQRTSPLLSCKKLRQ-KRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKA 479
            + + + +Q+ + L   K+++  +R    K + + +  + +++T IAH+ V ++ F+ KA
Sbjct: 289 AAKLEIFTQQQALLYIGKRVKTVRRAGAPKLSQLQEGIEAIATTVIAHLTVSDLNFREKA 348

Query: 480 MYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
           +Y+A+M R++++ + +P M+DDRDY GNKRLELAG L+SL+FED+FK+FN++ K
Sbjct: 349 LYIAIMARKVLMTMHNPSMVDDRDYVGNKRLELAGQLMSLLFEDLFKKFNTDFK 402



 Score = 88.6 bits (218), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/70 (57%), Positives = 53/70 (75%)

Query: 113 RDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           +DKW L+ +FLK KGLVK H+DSF+YF++V++KK+++AN  + SDVDP FYLKYLDI VG
Sbjct: 39  KDKWNLLPAFLKVKGLVKQHLDSFNYFVDVDLKKIIRANELVLSDVDPQFYLKYLDIRVG 98

Query: 173 IADKIIPKIK 182
                 P  K
Sbjct: 99  HKSSSAPGTK 108



 Score = 88.6 bits (218), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/170 (36%), Positives = 86/170 (50%), Gaps = 32/170 (18%)

Query: 247 KTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGI 306
           K +K++ P S    +W +L P+     +  GLVK      H+ + N         Y + +
Sbjct: 27  KGKKLTDPISTAKDKWNLL-PAFL---KVKGLVKQ-----HLDSFN---------YFVDV 68

Query: 307 EHIAMFNGEELS----SPGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHECR 362
           +   +    EL      P  YL +++     I   HK    P  +E         PHECR
Sbjct: 69  DLKKIIRANELVLSDVDPQFYLKYLD-----IRVGHKSSSAPGTKEVI-----MAPHECR 118

Query: 363 LRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKTEY 412
           LRDLTYSAPI VD+EYTRG + ++  DL IGRMPIML+S+KCVL    E+
Sbjct: 119 LRDLTYSAPIYVDVEYTRGRKIIMHKDLEIGRMPIMLRSNKCVLDGIDEH 168


>gi|390366248|ref|XP_783205.3| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like, partial
            [Strongylocentrotus purpuratus]
          Length = 541

 Score =  330 bits (846), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 162/268 (60%), Positives = 196/268 (73%), Gaps = 8/268 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG I YNQ+NRIDTLMY L Y   P+V+SKTI +  
Sbjct: 76   GLIPYPHHNQSPRNTYQCAMGKQAMGTIAYNQRNRIDTLMYLLAYPMAPLVKSKTIDLIG 135

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNA +AVMSYSGYDIEDALI+NKAS+DR          +              
Sbjct: 136  FDKLPAGQNAVVAVMSYSGYDIEDALILNKASVDRALLLRGPGSGNNGGDDGGTGGXXXX 195

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATP---- 1088
                         ++RHR LD DG+ APGE++  +QVL+NKSMP ++++ +  A+P    
Sbjct: 196  XXXXXXXXXXXXXIWRHRILDADGVCAPGERVINKQVLLNKSMPVVNMNPLQ-ASPTNQP 254

Query: 1089 ---EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV 1145
               +Y+EVP++YKG+  SY+EKVLV+SN E+AFL K+LLRQTRRPEIGDKFSSRHGQKGV
Sbjct: 255  QQHDYREVPITYKGTADSYIEKVLVTSNPEEAFLFKVLLRQTRRPEIGDKFSSRHGQKGV 314

Query: 1146 IGLIVEQEDMPFNESGICPDIIMNPHGL 1173
             GLIV+QEDMPF+E GICPDIIMNPHG 
Sbjct: 315  CGLIVQQEDMPFDERGICPDIIMNPHGF 342



 Score =  308 bits (788), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 143/192 (74%), Positives = 167/192 (86%)

Query: 1181 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1240
            +Y+EVP++YKG+  SY+EKVLV+SN E+AFL K+LLRQTRRPEIGDKFSSRHGQKGV GL
Sbjct: 258  DYREVPITYKGTADSYIEKVLVTSNPEEAFLFKVLLRQTRRPEIGDKFSSRHGQKGVCGL 317

Query: 1241 IVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKL 1300
            IV+QEDMPF+E GICPDIIMNPHG+PSRMTVGKLIE LAGKAG++EG +  GTAFGG K+
Sbjct: 318  IVQQEDMPFDERGICPDIIMNPHGFPSRMTVGKLIEFLAGKAGVLEGKFHYGTAFGGDKV 377

Query: 1301 VDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRV 1360
            VD+ E+L +HG+NY GKD   SGITGE L AYIY GPVYYQKLKHMV DK+HAR++GPR 
Sbjct: 378  VDICEDLRKHGFNYLGKDFLTSGITGEPLTAYIYFGPVYYQKLKHMVLDKMHARAKGPRA 437

Query: 1361 VLTRQPTGRRWK 1372
            VLTRQPT  R +
Sbjct: 438  VLTRQPTEGRAR 449



 Score =  147 bits (372), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 77/136 (56%), Positives = 90/136 (66%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           GF+ F+DFL EG +EYL         ++   S I    TTHLEI PFT+LGVCAG     
Sbjct: 23  GFRCFEDFLREGLVEYLXXXXXXXXXLSFL-SFIPNRETTHLEIEPFTILGVCAG----- 76

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQAMG I YNQ+NRIDTLMY L Y   P+V+
Sbjct: 77  ---------LIPYPHHNQSPRNTYQCAMGKQAMGTIAYNQRNRIDTLMYLLAYPMAPLVK 127

Query: 808 SKTIRITNFHKLPAGK 823
           SKTI +  F KLPAG+
Sbjct: 128 SKTIDLIGFDKLPAGQ 143


>gi|126132998|ref|XP_001383024.1| DNA-directed RNA polymerase III [Scheffersomyces stipitis CBS 6054]
 gi|126094849|gb|ABN64995.1| DNA-directed RNA polymerase III [Scheffersomyces stipitis CBS 6054]
          Length = 1155

 Score =  330 bits (845), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 157/267 (58%), Positives = 203/267 (76%), Gaps = 7/267 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ  RIDTL+Y +VY Q+PMV++KTI + +
Sbjct: 692  GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFRRIDTLLYFMVYPQQPMVKTKTIELID 751

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+AVMSYSGYDIEDAL++NK+S+DRGFGRC V R +   LK+YPN T D 
Sbjct: 752  YDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCQVVRKNTIQLKRYPNHTKDI 811

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAI-----SMAT 1087
            + G  ++ D  +P++ H+AL  DG+   G ++   QV  NK +PT +  ++      MA 
Sbjct: 812  VSGMRVDEDG-EPIFPHKALGPDGLGEIGARVENGQVYANKFVPTNAGESVLGHNEQMAG 870

Query: 1088 PE-YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVI 1146
             E ++E    YKG  PSY+++V++S +  D  LIK+LLRQTRRPE+GDKFSSRHGQKGV 
Sbjct: 871  AESHREAAAYYKGPEPSYVDQVMMSVSDNDQALIKVLLRQTRRPELGDKFSSRHGQKGVC 930

Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G+IV+QED+PFN+ GI PDIIMNPHG 
Sbjct: 931  GIIVQQEDLPFNDDGISPDIIMNPHGF 957



 Score =  276 bits (705), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 124/191 (64%), Positives = 159/191 (83%)

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
            ++E    YKG  PSY+++V++S +  D  LIK+LLRQTRRPE+GDKFSSRHGQKGV G+I
Sbjct: 874  HREAAAYYKGPEPSYVDQVMMSVSDNDQALIKVLLRQTRRPELGDKFSSRHGQKGVCGII 933

Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
            V+QED+PFN+ GI PDIIMNPHG+PSRMTVGK+IEL++GKAG++ G+ + GT FGG+KL 
Sbjct: 934  VQQEDLPFNDDGISPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGSLEYGTCFGGSKLE 993

Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
            D+ + L+  G++Y GKD+ YSGITGE L+AYI+ GP+YYQKLKHMV DK+HAR+RGPR V
Sbjct: 994  DMSKILVEKGFSYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAV 1053

Query: 1362 LTRQPTGRRWK 1372
            LTRQPT  R +
Sbjct: 1054 LTRQPTEGRSR 1064



 Score =  192 bits (489), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 106/206 (51%), Positives = 140/206 (67%), Gaps = 7/206 (3%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPK-IKAAQFD--IV 189
           +D  DY  N  ++   Q  + ++ D   LF     D    I DKI+ K  + ++FD  + 
Sbjct: 368 VDDRDYVGNKRLELAGQLMSLLFED---LFKKFNSDFKANI-DKILKKPSRTSEFDALLS 423

Query: 190 NHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
            ++  + IT  L  AI TGNW+++RFKMER GVT VLSRLSYIS LGMMTRI+SQFEK+R
Sbjct: 424 INIHSNNITMGLNRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSR 483

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHI 309
           KVSGPR+LQ SQ+GMLC SDTPEGEACGLVKNLALMTHITT+++E  + K+ Y +G E+I
Sbjct: 484 KVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTDDEEAPIRKLCYVLGCENI 543

Query: 310 AMFNGEELSSPGVYLVFVNGILAGIT 335
              +   L S G + +++NG L G +
Sbjct: 544 LGIDSATLHSQGNFGIYLNGTLIGTS 569



 Score =  160 bits (405), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 78/133 (58%), Positives = 94/133 (70%), Gaps = 15/133 (11%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGV-TTHLEIAPFTLLGVCAGIELLQYNK 750
           FDDFL  G +EYLDVNE NDS IA+ E  + P    THLEI PFT+LG  AG        
Sbjct: 641 FDDFLSHGLVEYLDVNEENDSLIALYEKDLDPSQPVTHLEIEPFTVLGAVAG-------- 692

Query: 751 RFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKT 810
                 L+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ  RIDTL+Y +VY Q+PMV++KT
Sbjct: 693 ------LIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFRRIDTLLYFMVYPQQPMVKTKT 746

Query: 811 IRITNFHKLPAGK 823
           I + ++ KLPAG+
Sbjct: 747 IELIDYDKLPAGQ 759



 Score =  103 bits (256), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 45/91 (49%), Positives = 69/91 (75%)

Query: 443 KRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDR 502
           +R    K + + +  + +++T IAHI V +++F+ KA+Y+A M RR+V+ + +P M+DDR
Sbjct: 312 RRAGAAKLSVLQEGIEAIATTVIAHITVADLQFREKALYIATMARRVVMTMHNPKMVDDR 371

Query: 503 DYYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
           DY GNKRLELAG L+SL+FED+FK+FNS+ K
Sbjct: 372 DYVGNKRLELAGQLMSLLFEDLFKKFNSDFK 402



 Score = 87.8 bits (216), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 40/69 (57%), Positives = 52/69 (75%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGI 173
           DKW L+ +FLK KGLVK H+DSF+YF++V++KK+++AN  + SDVDP FYLKYLDI VG 
Sbjct: 40  DKWNLLPAFLKVKGLVKQHLDSFNYFVDVDLKKIIRANELVLSDVDPEFYLKYLDIRVGH 99

Query: 174 ADKIIPKIK 182
                P  K
Sbjct: 100 KSSSAPGTK 108



 Score = 84.3 bits (207), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 43/88 (48%), Positives = 55/88 (62%), Gaps = 10/88 (11%)

Query: 319 SPGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEY 378
            P  YL +++     I   HK    P  +E         PHECRLRDLTYSAPI VD+EY
Sbjct: 85  DPEFYLKYLD-----IRVGHKSSSAPGTKEVI-----LPPHECRLRDLTYSAPIYVDVEY 134

Query: 379 TRGSQRVVRSDLVIGRMPIMLQSSKCVL 406
           TRG + ++  DL IGRMP+ML+S+KC+L
Sbjct: 135 TRGRKIIMHKDLEIGRMPVMLRSNKCIL 162


>gi|358396944|gb|EHK46319.1| hypothetical protein TRIATDRAFT_132468 [Trichoderma atroviride IMI
            206040]
          Length = 1157

 Score =  330 bits (845), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 151/266 (56%), Positives = 201/266 (75%), Gaps = 5/266 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+P+PHHNQ+PRNTYQCAMGKQA+G I +NQ NRIDTL+Y LVY QRPMV +KTI++ +
Sbjct: 688  GLIPFPHHNQSPRNTYQCAMGKQAIGAIAHNQFNRIDTLLYTLVYPQRPMVITKTIQLIH 747

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+ VMSYSGYDIEDAL++NKAS+DRGFGRC V+R     L++YPN   +R
Sbjct: 748  YDKLPAGQNATVVVMSYSGYDIEDALVLNKASIDRGFGRCQVFRKYTTELQKYPNGRRER 807

Query: 1033 ILGPL--LEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMP---TISVSAISMAT 1087
            +  P+  +E    + + +H ALD DG+   G++I   + +V K  P   T +   +    
Sbjct: 808  VGDPVNEVENGVMRRIKKHEALDADGLAIVGQRIHSGEAMVKKETPLDMTTTGIGLDRGP 867

Query: 1088 PEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
             EY++  VSY+ + P+Y++KV++S   +D  +IK+  RQTRRPE+GDKFSSRHGQKGV+G
Sbjct: 868  SEYRDTAVSYRIADPAYIDKVMISQTEKDTTVIKVQTRQTRRPELGDKFSSRHGQKGVVG 927

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            +IV+QEDMPF +SG+CPDIIMNPHG 
Sbjct: 928  IIVDQEDMPFADSGLCPDIIMNPHGF 953



 Score =  262 bits (669), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 121/201 (60%), Positives = 161/201 (80%), Gaps = 3/201 (1%)

Query: 1175 GCDR-ITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
            G DR  +EY++  VSY+ + P+Y++KV++S   +D  +IK+  RQTRRPE+GDKFSSRHG
Sbjct: 862  GLDRGPSEYRDTAVSYRIADPAYIDKVMISQTEKDTTVIKVQTRQTRRPELGDKFSSRHG 921

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEG--NYKE 1291
            QKGV+G+IV+QEDMPF +SG+CPDIIMNPHG+PSRMTVGKL+E L GKA ++ G  +Y  
Sbjct: 922  QKGVVGIIVDQEDMPFADSGLCPDIIMNPHGFPSRMTVGKLLECLTGKASIVHGRKDYGF 981

Query: 1292 GTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKI 1351
            G AF    +  V E L+ +G++++GKD F SGITGE LEAYI++GP+YYQ+LKHMVQDK+
Sbjct: 982  GDAFRSHPVQQVSEVLVDNGFSWEGKDYFTSGITGEPLEAYIFNGPIYYQRLKHMVQDKM 1041

Query: 1352 HARSRGPRVVLTRQPTGRRWK 1372
            H+R+RGPR +LTRQPT  R +
Sbjct: 1042 HSRARGPRAILTRQPTEGRSR 1062



 Score =  187 bits (475), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 93/154 (60%), Positives = 116/154 (75%), Gaps = 4/154 (2%)

Query: 188 IVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEK 247
           I NH   ++I   +  AIQ+GNW+++RF M R GVT VLSRLSYIS LGMMTRI+SQFEK
Sbjct: 420 ISNH--ANSIGLGINRAIQSGNWSVKRFNMNRAGVTHVLSRLSYISALGMMTRISSQFEK 477

Query: 248 TRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMY--NIG 305
           TRKVSGPR+LQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT  +E  + + ++  ++G
Sbjct: 478 TRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTNVEEDPVKRWIFTLDVG 537

Query: 306 IEHIAMFNGEELSSPGVYLVFVNGILAGITCHHK 339
           +E I  F+G E+   G Y++ VNG    +T + K
Sbjct: 538 VEPIRNFSGAEMHREGSYIIHVNGTPFALTRYPK 571



 Score =  161 bits (408), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 82/147 (55%), Positives = 102/147 (69%), Gaps = 16/147 (10%)

Query: 677 RPTFLNMHQFLGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTL 736
           +P  L + Q +G   FDDFL +G +EYLDVNE ND+ I + E  +    TTHLEI PFTL
Sbjct: 625 KPEHLRLLQ-MGKVTFDDFLTKGIVEYLDVNEENDALITIYEDQVTMS-TTHLEIEPFTL 682

Query: 737 LGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMY 796
           LG  AG              L+P+PHHNQ+PRNTYQCAMGKQA+G I +NQ NRIDTL+Y
Sbjct: 683 LGAVAG--------------LIPFPHHNQSPRNTYQCAMGKQAIGAIAHNQFNRIDTLLY 728

Query: 797 NLVYAQRPMVESKTIRITNFHKLPAGK 823
            LVY QRPMV +KTI++ ++ KLPAG+
Sbjct: 729 TLVYPQRPMVITKTIQLIHYDKLPAGQ 755



 Score = 97.4 bits (241), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 51/130 (39%), Positives = 81/130 (62%), Gaps = 3/130 (2%)

Query: 407 RNKTEYTSSSRRASTSSVTMHSQRTSPLLSCKKLRQKRFQ---TYKKTPVDDARDFLSST 463
           R + E+  +   A+ + +    Q    + S  K+  +R Q     ++  V++  D L++ 
Sbjct: 269 RYQDEFLVNFDEAAKAGIFTQHQALEYIGSRVKMGSRRGQFGAQARRNNVEEGLDALANL 328

Query: 464 CIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGSLLSLMFED 523
            IAH+P+  + F  KA+Y+A+M RR+++A  D  ++DDRD+ GNKRLELAG LLSL+FED
Sbjct: 329 IIAHVPIEGLDFYPKAIYVAMMTRRVLMASQDNKLVDDRDFVGNKRLELAGQLLSLLFED 388

Query: 524 VFKRFNSELK 533
           +FKRF  E+K
Sbjct: 389 LFKRFMGEVK 398



 Score = 73.9 bits (180), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 31/52 (59%), Positives = 41/52 (78%)

Query: 355 QTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVL 406
           + TP ECRLRD+TY+API VDI Y R  Q++VR ++ +GRMP+ML+S KC L
Sbjct: 103 EVTPMECRLRDMTYAAPIFVDIAYIRDKQKIVRKNVPLGRMPVMLKSCKCRL 154



 Score = 68.6 bits (166), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 46/58 (79%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           DK++L+ +FLK KGLVK HIDS+++F+  EIK++++AN  I SDVD  F+L++ DI V
Sbjct: 30  DKFQLLPAFLKVKGLVKQHIDSYNFFVEHEIKEIVRANRTIRSDVDSNFWLEFTDIRV 87


>gi|384253175|gb|EIE26650.1| DNA-directed RNA polymerase III, subunit 2 [Coccomyxa subellipsoidea
            C-169]
          Length = 1170

 Score =  329 bits (844), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 156/268 (58%), Positives = 197/268 (73%), Gaps = 7/268 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG I YNQ N +DTL+Y LVY QRP++ +KTI +  
Sbjct: 695  GLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLNVMDTLLYLLVYPQRPLLTTKTIELVG 754

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KL AGQNAT+AVMSYSGYDIEDA+IMN+ASLDRGFGRC+V R    VLK++ N++ D 
Sbjct: 755  FDKLGAGQNATVAVMSYSGYDIEDAIIMNRASLDRGFGRCIVLRKYGTVLKKHQNRSQDT 814

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPT-----ISVSAISMAT 1087
            ++   L     KP  RH+ LD+DG+ APGE     ++L+NK +P      +    +S+  
Sbjct: 815  VVAAPLPPGQSKPTGRHKLLDEDGLAAPGEIASPGEILINKQVPMSTKDPLPHGMVSLPP 874

Query: 1088 PEYKEVPVSYKG--SVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV 1145
              YK  PVS+KG       ++KVL+++N +   +IK L+R TRRPE+GDKFSSRHGQKGV
Sbjct: 875  SAYKPAPVSWKGPPGESCIVDKVLLTNNDDGHTVIKTLMRHTRRPEVGDKFSSRHGQKGV 934

Query: 1146 IGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            +G IV QEDMPF+E GICPD+IMNPHG 
Sbjct: 935  VGSIVAQEDMPFSERGICPDLIMNPHGF 962



 Score =  249 bits (635), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 123/210 (58%), Positives = 154/210 (73%), Gaps = 8/210 (3%)

Query: 1170 PHGLKGCDRITEYKEVPVSYKG--SVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDK 1227
            PHG+      + YK  PVS+KG       ++KVL+++N +   +IK L+R TRRPE+GDK
Sbjct: 866  PHGMVSLPP-SAYKPAPVSWKGPPGESCIVDKVLLTNNDDGHTVIKTLMRHTRRPEVGDK 924

Query: 1228 FSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEG 1287
            FSSRHGQKGV+G IV QEDMPF+E GICPD+IMNPHG+PSRMTVGK++EL+  KA +  G
Sbjct: 925  FSSRHGQKGVVGSIVAQEDMPFSERGICPDLIMNPHGFPSRMTVGKMLELIGSKAAVQSG 984

Query: 1288 NYKEGTAFG-GTKLVD----VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQK 1342
             +  GTAFG  T L D    + + L+ HG++Y GKD   SG +GE LEA I+ GPVYYQK
Sbjct: 985  RFHYGTAFGESTGLADNVDSISKTLVEHGFSYSGKDQLTSGSSGEPLEALIFMGPVYYQK 1044

Query: 1343 LKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
            LKHMV DK+HAR+RGPRVVLTRQPT  R +
Sbjct: 1045 LKHMVLDKMHARARGPRVVLTRQPTEGRSR 1074



 Score =  207 bits (527), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 98/171 (57%), Positives = 130/171 (76%), Gaps = 1/171 (0%)

Query: 174 ADKIIPKI-KAAQFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYI 232
           AD  + K  +A+QFD   ++  + I+  + +AI +GNWTIRRF+MER+GVTQVLSRLS+I
Sbjct: 414 ADNTLSKANRASQFDAAKNLHVEMISQGMESAISSGNWTIRRFRMERKGVTQVLSRLSFI 473

Query: 233 SGLGMMTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTEN 292
           + LGMMTRI SQFEKTRKVSGPR+LQ SQWGMLCP+DTPEGE+CGLVKNLALMTH+TT+ 
Sbjct: 474 AALGMMTRITSQFEKTRKVSGPRALQPSQWGMLCPADTPEGESCGLVKNLALMTHVTTDE 533

Query: 293 DEKNMLKIMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAGITCHHKEVCK 343
           +E  + ++ + +G +   + +G E SS GV +VF+NG + GI    K + K
Sbjct: 534 EEAPLARLAHLLGTQPATLVSGFEYSSRGVAMVFLNGSILGIHRRPKRLVK 584



 Score =  150 bits (378), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 78/133 (58%), Positives = 92/133 (69%), Gaps = 17/133 (12%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGV-TTHLEIAPFTLLGVCAGIELLQYNK 750
           F DFL  G +EYLDVNE N++ IA+ E     GV TTHLEI PFT+LGV AG        
Sbjct: 646 FSDFLRNGLVEYLDVNEENNALIALYERNC--GVATTHLEIEPFTVLGVVAG-------- 695

Query: 751 RFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKT 810
                 L+PYPHHNQ+PRNTYQCAMGKQAMG I YNQ N +DTL+Y LVY QRP++ +KT
Sbjct: 696 ------LIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLNVMDTLLYLLVYPQRPLLTTKT 749

Query: 811 IRITNFHKLPAGK 823
           I +  F KL AG+
Sbjct: 750 IELVGFDKLGAGQ 762



 Score = 95.9 bits (237), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/98 (53%), Positives = 72/98 (73%)

Query: 438 KKLRQKRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPD 497
           K  +Q+      ++ VD+ARD L++  + HIPV    F+ K +Y+AVM+RRM+ A+ D  
Sbjct: 316 KAGKQQYSSRRSRSKVDEARDILANVVVCHIPVPQYDFQQKVIYMAVMMRRMIAAMLDST 375

Query: 498 MLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELKET 535
           ++DDRDYYGNKRLELAG LL+L+FED+FKR N+ELK T
Sbjct: 376 LIDDRDYYGNKRLELAGGLLALLFEDLFKRMNNELKRT 413



 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/77 (53%), Positives = 56/77 (72%), Gaps = 7/77 (9%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSD------LVIGR 394
           V +P++EE +  T   TP  CRLRD+TY+API+VD+EYTRG + VVR        +VIGR
Sbjct: 100 VGRPQVEEDY-ITTGITPQACRLRDMTYAAPISVDVEYTRGKEIVVRKGKNGVGAVVIGR 158

Query: 395 MPIMLQSSKCVLRNKTE 411
           MP+ML+S +CVL+ K+E
Sbjct: 159 MPLMLRSDRCVLKGKSE 175



 Score = 79.7 bits (195), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 56/89 (62%), Gaps = 2/89 (2%)

Query: 86  GTVKAVHGTYLTMVTDETSKLKDSPEIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIK 145
           GT    +G +  ++ D +       E+ DK++L+ +FLK +GLVK HIDSF+YFIN EIK
Sbjct: 13  GTGAYENGVHEALLADPSKLTHPIKEVADKYELLPAFLKVRGLVKQHIDSFNYFINQEIK 72

Query: 146 KLMQANAN--IYSDVDPLFYLKYLDIHVG 172
           K++ A  N  +  D DP F+ KY DI VG
Sbjct: 73  KIVHAKGNEKVTCDTDPNFFFKYTDIFVG 101


>gi|344229872|gb|EGV61757.1| beta and beta-prime subunits of DNA dependent RNA-polymerase [Candida
            tenuis ATCC 10573]
          Length = 1165

 Score =  329 bits (844), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 157/268 (58%), Positives = 199/268 (74%), Gaps = 8/268 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G IGYNQ  RIDTL+Y +VY Q+PMV++KTI + +
Sbjct: 701  GLIPYPHHNQSPRNTYQCAMGKQAIGAIGYNQFRRIDTLLYLMVYPQQPMVKTKTIELID 760

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+AVMSYSGYDIEDAL++NKAS+DRGFGRC V R +   LK+YPN T D 
Sbjct: 761  YDKLPAGQNATVAVMSYSGYDIEDALVLNKASVDRGFGRCQVLRKNTITLKRYPNHTKD- 819

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAI-------SM 1085
            IL  +   +  +P+  H +L  DG+   G ++   QV VNK +PT +   +         
Sbjct: 820  ILSGMRVDENNEPIPPHSSLGPDGLGEVGMKLENGQVYVNKCVPTNAGETVLNGPGANEQ 879

Query: 1086 ATPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV 1145
                ++E P  YKG  PSY+++V++S +  D  LIK+LLRQTRRPE+GDKFSSRHGQKGV
Sbjct: 880  PAESHRETPAYYKGPEPSYVDQVMMSVSDNDQALIKVLLRQTRRPELGDKFSSRHGQKGV 939

Query: 1146 IGLIVEQEDMPFNESGICPDIIMNPHGL 1173
             G+IV+QED+PFN+ GI PDIIMNPHG 
Sbjct: 940  CGIIVQQEDLPFNDDGISPDIIMNPHGF 967



 Score =  281 bits (720), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 126/191 (65%), Positives = 160/191 (83%)

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
            ++E P  YKG  PSY+++V++S +  D  LIK+LLRQTRRPE+GDKFSSRHGQKGV G+I
Sbjct: 884  HRETPAYYKGPEPSYVDQVMMSVSDNDQALIKVLLRQTRRPELGDKFSSRHGQKGVCGII 943

Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
            V+QED+PFN+ GI PDIIMNPHG+PSRMTVGK+IEL++GKAG++ G  + GT FGG+ L 
Sbjct: 944  VQQEDLPFNDDGISPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGTLEYGTCFGGSDLQ 1003

Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
            D+ E L+++G+NY GKD+ YSGITGE L+AYI+ GP+YYQKLKHMV DK+HAR+RGPR V
Sbjct: 1004 DMSEILVQNGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAV 1063

Query: 1362 LTRQPTGRRWK 1372
            LTRQPT  R +
Sbjct: 1064 LTRQPTEGRSR 1074



 Score =  193 bits (490), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 105/206 (50%), Positives = 141/206 (68%), Gaps = 7/206 (3%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPK-IKAAQFD--IV 189
           +D  DY  N  ++   Q  + ++ D   LF     D    I DKI+ K  +A++FD  + 
Sbjct: 374 VDDRDYVGNKRLELAGQLMSLLFED---LFKKFNSDFKANI-DKILKKPSRASEFDALLS 429

Query: 190 NHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
            ++  + IT  +  AI TGNW+++RFKMER GVT VLSRLSYIS LGMMTRI+SQFEK+R
Sbjct: 430 INIHSNNITMGMNRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSR 489

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHI 309
           KVSGPR+LQ SQ+GMLC SDTPEGEACGLVKNLALMTHITT+++E+ + ++ + +G E I
Sbjct: 490 KVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTDDEEEPIKRLCFILGCEDI 549

Query: 310 AMFNGEELSSPGVYLVFVNGILAGIT 335
              +   L + G Y +++NG L G T
Sbjct: 550 LEVDSASLHAKGNYGIYLNGTLIGTT 575



 Score =  158 bits (400), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 77/135 (57%), Positives = 94/135 (69%), Gaps = 17/135 (12%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGV---TTHLEIAPFTLLGVCAGIELLQY 748
           FDDFL  G +EYLDVNE NDS IA+ E  +        THLE+ PFT+LG  AG      
Sbjct: 648 FDDFLKHGLVEYLDVNEENDSLIAIYERDLSDSTKSNITHLEVEPFTVLGAVAG------ 701

Query: 749 NKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVES 808
                   L+PYPHHNQ+PRNTYQCAMGKQA+G IGYNQ  RIDTL+Y +VY Q+PMV++
Sbjct: 702 --------LIPYPHHNQSPRNTYQCAMGKQAIGAIGYNQFRRIDTLLYLMVYPQQPMVKT 753

Query: 809 KTIRITNFHKLPAGK 823
           KTI + ++ KLPAG+
Sbjct: 754 KTIELIDYDKLPAGQ 768



 Score =  101 bits (252), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 44/91 (48%), Positives = 70/91 (76%)

Query: 443 KRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDR 502
           +R    K + + +  + +++T IAHI V +++F+ KA+Y+A+M RR+++ + +P M+DDR
Sbjct: 318 RRAGAPKLSQLQEGIEAIATTIIAHITVSDLQFREKALYIAMMTRRVLMTMENPKMVDDR 377

Query: 503 DYYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
           DY GNKRLELAG L+SL+FED+FK+FNS+ K
Sbjct: 378 DYVGNKRLELAGQLMSLLFEDLFKKFNSDFK 408



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 37/59 (62%), Positives = 49/59 (83%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           DKW L+ +FLK KGLVK H+DSF+YF++ ++KK+++AN  + SDVDP FYLKYLDI VG
Sbjct: 43  DKWNLLPAFLKVKGLVKQHLDSFNYFVDTDLKKIIKANELVLSDVDPEFYLKYLDIRVG 101



 Score = 82.8 bits (203), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/67 (56%), Positives = 49/67 (73%), Gaps = 2/67 (2%)

Query: 342 CKPEIEESFNYTRQT--TPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIML 399
           CK     +   +++    PH+CRLRDLTYSAPI VD+EYTRG + +V  DL IGRMPIML
Sbjct: 102 CKSSTSTAKGLSKEVNLVPHDCRLRDLTYSAPIYVDVEYTRGRKIIVHRDLEIGRMPIML 161

Query: 400 QSSKCVL 406
           +S+KC+L
Sbjct: 162 RSNKCLL 168


>gi|146414794|ref|XP_001483367.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Meyerozyma
            guilliermondii ATCC 6260]
          Length = 1156

 Score =  328 bits (842), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 157/269 (58%), Positives = 202/269 (75%), Gaps = 9/269 (3%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ  RIDTL+Y +VY Q+PMV++KTI + +
Sbjct: 691  GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFRRIDTLLYLMVYPQQPMVKTKTIELID 750

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+AVMSYSGYDIEDAL++NKAS+DRGFGRC V R +   LK+YPN T D 
Sbjct: 751  YDKLPAGQNATVAVMSYSGYDIEDALVLNKASIDRGFGRCQVLRKNTVNLKRYPNHTKDV 810

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPT-ISVSAISMATP--- 1088
            + G  ++ +  +P++ H +L  DG+   G ++   QV VNK +PT  S S +    P   
Sbjct: 811  VSGMRVD-EQGEPIFPHASLGPDGLGEVGMKVENGQVYVNKCVPTNASESVLGANEPHHQ 869

Query: 1089 ----EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKG 1144
                 ++E P  Y+G  PSY+++V++S +  D  LIK+LLRQTRRPE+GDKFSSRHGQKG
Sbjct: 870  QNVESHRETPAYYRGPEPSYIDQVMMSVSDNDQTLIKVLLRQTRRPELGDKFSSRHGQKG 929

Query: 1145 VIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            V G+IV+QED+PFN+ GI PDIIMNPHG 
Sbjct: 930  VCGIIVQQEDLPFNDDGIVPDIIMNPHGF 958



 Score =  284 bits (727), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 126/194 (64%), Positives = 163/194 (84%)

Query: 1179 ITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVI 1238
            +  ++E P  Y+G  PSY+++V++S +  D  LIK+LLRQTRRPE+GDKFSSRHGQKGV 
Sbjct: 872  VESHRETPAYYRGPEPSYIDQVMMSVSDNDQTLIKVLLRQTRRPELGDKFSSRHGQKGVC 931

Query: 1239 GLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGT 1298
            G+IV+QED+PFN+ GI PDIIMNPHG+PSRMTVGK+IEL++GKAG++ G+ + GT FGG+
Sbjct: 932  GIIVQQEDLPFNDDGIVPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGSLEYGTCFGGS 991

Query: 1299 KLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGP 1358
            KL D+ E L+++G+NY GKD+ YSGITGE L+AYI+ GP+YYQKLKHMV DK+HAR+RGP
Sbjct: 992  KLEDMSEILVKNGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGP 1051

Query: 1359 RVVLTRQPTGRRWK 1372
            R VLTRQPT  R +
Sbjct: 1052 RAVLTRQPTEGRSR 1065



 Score =  195 bits (495), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 128/337 (37%), Positives = 192/337 (56%), Gaps = 29/337 (8%)

Query: 20  LKHHPIGTPGPAYIFFLLEGLQAILFL--------PLFKQ---VDFGDS---KVVSLREL 65
           LKH+ IG   P  I     G+ + L +        P ++    V+F ++   +V + ++ 
Sbjct: 239 LKHNSIGEDVPIVIILKAAGITSDLEILQLVCGSNPQYQDLFAVNFEEAARLEVFTQQQA 298

Query: 66  LSHVTYQKRLYRLTVQPNWLGTVKAVHGTYLTMVTDETSKLKDSPEIRDKWKLVLSFLKE 125
           L++V  + +  R    P      + +     T++   T    D  + R+K  L ++ +  
Sbjct: 299 LNYVGKRVKTVRRAGAPKLSQLQEGIEAIATTIIAHITV---DDLQFREK-ALYIAMMAR 354

Query: 126 KGLVKPH----IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPK- 180
           + L+  H    +D  DY  N  ++   Q  + ++ D   LF     D    I DKI+ K 
Sbjct: 355 RVLMTMHNPKMVDDRDYVGNKRLELAGQLMSLLFED---LFKKFNSDFKANI-DKILKKP 410

Query: 181 IKAAQFD--IVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMM 238
            +A +FD  +  ++  + IT  +  AI TGNW+++RFKMER GVT VLSRLSYIS LGMM
Sbjct: 411 SRALEFDALLSINIHSNNITMGMNRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMM 470

Query: 239 TRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNML 298
           TRI+SQFEK+RKVSGPR+LQ SQ+GMLC SDTPEGEACGLVKNLALMTHITT+++E+ + 
Sbjct: 471 TRISSQFEKSRKVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTDDEEEPIR 530

Query: 299 KIMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAGIT 335
            + + +G E I   +   L + G + +++NG + G T
Sbjct: 531 LVCFALGCEDILEVDSATLHADGNFGIYLNGTIIGTT 567



 Score =  154 bits (390), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 75/133 (56%), Positives = 93/133 (69%), Gaps = 15/133 (11%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVT-THLEIAPFTLLGVCAGIELLQYNK 750
           F+DF+  G +EYLDVNE NDS IA+ E  +      THLEI PFT+LG  AG        
Sbjct: 640 FEDFIKHGLVEYLDVNEENDSFIALYERDLEANQNITHLEIEPFTVLGAVAG-------- 691

Query: 751 RFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKT 810
                 L+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ  RIDTL+Y +VY Q+PMV++KT
Sbjct: 692 ------LIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFRRIDTLLYLMVYPQQPMVKTKT 745

Query: 811 IRITNFHKLPAGK 823
           I + ++ KLPAG+
Sbjct: 746 IELIDYDKLPAGQ 758



 Score =  100 bits (250), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 44/91 (48%), Positives = 70/91 (76%)

Query: 443 KRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDR 502
           +R    K + + +  + +++T IAHI V +++F+ KA+Y+A+M RR+++ + +P M+DDR
Sbjct: 310 RRAGAPKLSQLQEGIEAIATTIIAHITVDDLQFREKALYIAMMARRVLMTMHNPKMVDDR 369

Query: 503 DYYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
           DY GNKRLELAG L+SL+FED+FK+FNS+ K
Sbjct: 370 DYVGNKRLELAGQLMSLLFEDLFKKFNSDFK 400



 Score = 88.2 bits (217), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 38/61 (62%), Positives = 51/61 (83%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           + DKW L+ +FLK KGLVK H+DSF++F++V++KK++QAN  + SDVDP FYLKYLDI V
Sbjct: 36  VDDKWNLLPAFLKVKGLVKQHLDSFNFFVDVDLKKIVQANELVLSDVDPDFYLKYLDIRV 95

Query: 172 G 172
           G
Sbjct: 96  G 96



 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/88 (50%), Positives = 55/88 (62%), Gaps = 10/88 (11%)

Query: 319 SPGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEY 378
            P  YL +++     I   HK    P  +E         PHECRLRDLTYSAPI VD+EY
Sbjct: 83  DPDFYLKYLD-----IRVGHKSTSSPGTKEVI-----LPPHECRLRDLTYSAPIYVDVEY 132

Query: 379 TRGSQRVVRSDLVIGRMPIMLQSSKCVL 406
           TRG + ++  DL IGRMPIML+S+KC+L
Sbjct: 133 TRGRKIIMHKDLEIGRMPIMLKSNKCIL 160


>gi|190347676|gb|EDK39998.2| DNA-directed RNA polymerase III 130 kDa polypeptide [Meyerozyma
            guilliermondii ATCC 6260]
          Length = 1156

 Score =  328 bits (842), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 157/269 (58%), Positives = 202/269 (75%), Gaps = 9/269 (3%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ  RIDTL+Y +VY Q+PMV++KTI + +
Sbjct: 691  GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFRRIDTLLYLMVYPQQPMVKTKTIELID 750

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+AVMSYSGYDIEDAL++NKAS+DRGFGRC V R +   LK+YPN T D 
Sbjct: 751  YDKLPAGQNATVAVMSYSGYDIEDALVLNKASIDRGFGRCQVLRKNTVNLKRYPNHTKDV 810

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPT-ISVSAISMATP--- 1088
            + G  ++ +  +P++ H +L  DG+   G ++   QV VNK +PT  S S +    P   
Sbjct: 811  VSGMRVD-EQGEPIFPHASLGPDGLGEVGMKVENGQVYVNKCVPTNASESVLGANEPHHQ 869

Query: 1089 ----EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKG 1144
                 ++E P  Y+G  PSY+++V++S +  D  LIK+LLRQTRRPE+GDKFSSRHGQKG
Sbjct: 870  QNVESHRETPAYYRGPEPSYIDQVMMSVSDNDQTLIKVLLRQTRRPELGDKFSSRHGQKG 929

Query: 1145 VIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            V G+IV+QED+PFN+ GI PDIIMNPHG 
Sbjct: 930  VCGIIVQQEDLPFNDDGIVPDIIMNPHGF 958



 Score =  284 bits (727), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 126/194 (64%), Positives = 163/194 (84%)

Query: 1179 ITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVI 1238
            +  ++E P  Y+G  PSY+++V++S +  D  LIK+LLRQTRRPE+GDKFSSRHGQKGV 
Sbjct: 872  VESHRETPAYYRGPEPSYIDQVMMSVSDNDQTLIKVLLRQTRRPELGDKFSSRHGQKGVC 931

Query: 1239 GLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGT 1298
            G+IV+QED+PFN+ GI PDIIMNPHG+PSRMTVGK+IEL++GKAG++ G+ + GT FGG+
Sbjct: 932  GIIVQQEDLPFNDDGIVPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGSLEYGTCFGGS 991

Query: 1299 KLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGP 1358
            KL D+ E L+++G+NY GKD+ YSGITGE L+AYI+ GP+YYQKLKHMV DK+HAR+RGP
Sbjct: 992  KLEDMSEILVKNGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGP 1051

Query: 1359 RVVLTRQPTGRRWK 1372
            R VLTRQPT  R +
Sbjct: 1052 RAVLTRQPTEGRSR 1065



 Score =  197 bits (500), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 128/337 (37%), Positives = 193/337 (57%), Gaps = 29/337 (8%)

Query: 20  LKHHPIGTPGPAYIFFLLEGLQAILFL--------PLFKQ---VDFGDS---KVVSLREL 65
           LKH+ IG   P  I     G+ + L +        P ++    V+F ++   +V + ++ 
Sbjct: 239 LKHNSIGEDVPIVIILKAAGITSDLEILQLVCGSNPQYQDLFAVNFEEAARLEVFTQQQA 298

Query: 66  LSHVTYQKRLYRLTVQPNWLGTVKAVHGTYLTMVTDETSKLKDSPEIRDKWKLVLSFLKE 125
           L++V  + +  R    P      + +     T++   T    D  + R+K  L ++ +  
Sbjct: 299 LNYVGKRVKTVRRAGAPKLSQLQEGIEAIATTIIAHITV---DDLQFREK-ALYIAMMAR 354

Query: 126 KGLVKPH----IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPK- 180
           + L+  H    +D  DY  N  ++   Q  + ++ D   LF     D    I DKI+ K 
Sbjct: 355 RVLMTMHNPKMVDDRDYVGNKRLELAGQLMSLLFED---LFKKFNSDFKANI-DKILKKP 410

Query: 181 IKAAQFD--IVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMM 238
            +A++FD  +  ++  + IT  +  AI TGNW+++RFKMER GVT VLSRLSYIS LGMM
Sbjct: 411 SRASEFDALLSINIHSNNITMGMNRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMM 470

Query: 239 TRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNML 298
           TRI+SQFEK+RKVSGPR+LQ SQ+GMLC SDTPEGEACGLVKNLALMTHITT+++E+ + 
Sbjct: 471 TRISSQFEKSRKVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTDDEEEPIR 530

Query: 299 KIMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAGIT 335
            + + +G E I   +   L + G + +++NG + G T
Sbjct: 531 SVCFALGCEDILEVDSATLHADGNFGIYLNGTIIGTT 567



 Score =  154 bits (390), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 75/133 (56%), Positives = 93/133 (69%), Gaps = 15/133 (11%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVT-THLEIAPFTLLGVCAGIELLQYNK 750
           F+DF+  G +EYLDVNE NDS IA+ E  +      THLEI PFT+LG  AG        
Sbjct: 640 FEDFIKHGLVEYLDVNEENDSFIALYERDLEANQNITHLEIEPFTVLGAVAG-------- 691

Query: 751 RFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKT 810
                 L+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ  RIDTL+Y +VY Q+PMV++KT
Sbjct: 692 ------LIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFRRIDTLLYLMVYPQQPMVKTKT 745

Query: 811 IRITNFHKLPAGK 823
           I + ++ KLPAG+
Sbjct: 746 IELIDYDKLPAGQ 758



 Score =  100 bits (250), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 44/91 (48%), Positives = 70/91 (76%)

Query: 443 KRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDR 502
           +R    K + + +  + +++T IAHI V +++F+ KA+Y+A+M RR+++ + +P M+DDR
Sbjct: 310 RRAGAPKLSQLQEGIEAIATTIIAHITVDDLQFREKALYIAMMARRVLMTMHNPKMVDDR 369

Query: 503 DYYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
           DY GNKRLELAG L+SL+FED+FK+FNS+ K
Sbjct: 370 DYVGNKRLELAGQLMSLLFEDLFKKFNSDFK 400



 Score = 88.2 bits (217), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 38/61 (62%), Positives = 51/61 (83%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           + DKW L+ +FLK KGLVK H+DSF++F++V++KK++QAN  + SDVDP FYLKYLDI V
Sbjct: 36  VDDKWNLLPAFLKVKGLVKQHLDSFNFFVDVDLKKIVQANELVLSDVDPDFYLKYLDIRV 95

Query: 172 G 172
           G
Sbjct: 96  G 96



 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/88 (50%), Positives = 55/88 (62%), Gaps = 10/88 (11%)

Query: 319 SPGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEY 378
            P  YL +++     I   HK    P  +E         PHECRLRDLTYSAPI VD+EY
Sbjct: 83  DPDFYLKYLD-----IRVGHKSTSSPGTKEVI-----LPPHECRLRDLTYSAPIYVDVEY 132

Query: 379 TRGSQRVVRSDLVIGRMPIMLQSSKCVL 406
           TRG + ++  DL IGRMPIML+S+KC+L
Sbjct: 133 TRGRKIIMHKDLEIGRMPIMLKSNKCIL 160


>gi|344303893|gb|EGW34142.1| DNA-directed RNA polymerase [Spathaspora passalidarum NRRL Y-27907]
          Length = 1155

 Score =  328 bits (842), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 159/267 (59%), Positives = 201/267 (75%), Gaps = 7/267 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ  RIDTL+Y +VY Q+PMV++KTI + +
Sbjct: 692  GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFRRIDTLLYFMVYPQQPMVKTKTIELID 751

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+AVMSYSGYDIEDAL++NKAS+DRGFGRC V R +   LK+YPN T D 
Sbjct: 752  YDKLPAGQNATVAVMSYSGYDIEDALVLNKASIDRGFGRCQVVRKNTIQLKRYPNHTKD- 810

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPT-ISVSAISMAT---- 1087
            IL  +   +   P++ H+AL  DG+   G +I   Q+  NK +PT    SA+  A+    
Sbjct: 811  ILSGMRVDEHGNPIFPHQALGPDGLGEVGARIENGQIYANKFVPTNAGESALGGASEPTN 870

Query: 1088 -PEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVI 1146
               ++E P  YKG  PSY+++V++S +  D  LIK+LLRQTRRPE+GDKFSSRHGQKGV 
Sbjct: 871  VESHRETPAYYKGPEPSYVDQVMMSVSDNDQALIKVLLRQTRRPELGDKFSSRHGQKGVC 930

Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G+IV+QED+PFN+ GI PDIIMNPHG 
Sbjct: 931  GIIVQQEDLPFNDMGISPDIIMNPHGF 957



 Score =  278 bits (710), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 125/194 (64%), Positives = 160/194 (82%)

Query: 1179 ITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVI 1238
            +  ++E P  YKG  PSY+++V++S +  D  LIK+LLRQTRRPE+GDKFSSRHGQKGV 
Sbjct: 871  VESHRETPAYYKGPEPSYVDQVMMSVSDNDQALIKVLLRQTRRPELGDKFSSRHGQKGVC 930

Query: 1239 GLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGT 1298
            G+IV+QED+PFN+ GI PDIIMNPHG+PSRMTVGK+IEL++GKAG++ G  + GT FGG+
Sbjct: 931  GIIVQQEDLPFNDMGISPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGTLEYGTCFGGS 990

Query: 1299 KLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGP 1358
            KL D+ + L+  G++Y GKD+ YSGITGE L+AYI+ GP+YYQKLKHMV DK+HAR+RGP
Sbjct: 991  KLEDMSKILVDKGFSYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGP 1050

Query: 1359 RVVLTRQPTGRRWK 1372
            R VLTRQPT  R +
Sbjct: 1051 RAVLTRQPTEGRSR 1064



 Score =  189 bits (481), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 106/206 (51%), Positives = 137/206 (66%), Gaps = 7/206 (3%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPK-IKAAQFD--IV 189
           +D  DY  N  ++   Q  + ++ D   LF     D    I DK++ K  + ++FD  + 
Sbjct: 367 VDDRDYVGNKRLELAGQLMSLLFED---LFKKFNSDFKANI-DKVLKKPSRTSEFDALLS 422

Query: 190 NHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
            ++  + IT  L  AI TGNW+++RFKMER GVT VLSRLSYIS LGMMTRI+SQFEK+R
Sbjct: 423 INIHSNNITMGLNRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSR 482

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHI 309
           KVSGPR+LQ SQ+GMLC SDTPEGEACGLVKNLALMTHITT+++E  + K+ Y +G E I
Sbjct: 483 KVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTDDEELPIKKLCYMLGCEPI 542

Query: 310 AMFNGEELSSPGVYLVFVNGILAGIT 335
              +   L   G + + VNG L G T
Sbjct: 543 LGVDSATLHDEGNFGIHVNGTLVGTT 568



 Score =  160 bits (405), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 79/134 (58%), Positives = 94/134 (70%), Gaps = 16/134 (11%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGV--TTHLEIAPFTLLGVCAGIELLQYN 749
           FDDFL  G +EYLDVNE NDS IA+ E  I      TTHLEI PFT+LG  AG       
Sbjct: 640 FDDFLVHGLVEYLDVNEENDSLIALYEENINENSVPTTHLEIEPFTVLGAVAG------- 692

Query: 750 KRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESK 809
                  L+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ  RIDTL+Y +VY Q+PMV++K
Sbjct: 693 -------LIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFRRIDTLLYFMVYPQQPMVKTK 745

Query: 810 TIRITNFHKLPAGK 823
           TI + ++ KLPAG+
Sbjct: 746 TIELIDYDKLPAGQ 759



 Score =  101 bits (252), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 44/91 (48%), Positives = 69/91 (75%)

Query: 443 KRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDR 502
           +R    K + + +  + +++T IAH+ V +++FK KA+Y+A M RR+++ + +P M+DDR
Sbjct: 311 RRAGAPKLSQLQEGIEAIATTIIAHLTVSDLQFKEKALYIATMARRVIMTMHNPTMVDDR 370

Query: 503 DYYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
           DY GNKRLELAG L+SL+FED+FK+FNS+ K
Sbjct: 371 DYVGNKRLELAGQLMSLLFEDLFKKFNSDFK 401



 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 37/59 (62%), Positives = 49/59 (83%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           DKW L+ +FLK KGLVK H+DSF+YF++ ++KK+++AN  + SDVDP FYLKYLDI VG
Sbjct: 40  DKWNLLPAFLKVKGLVKQHLDSFNYFVDTDLKKIIKANELVLSDVDPEFYLKYLDIRVG 98



 Score = 84.7 bits (208), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 37/56 (66%), Positives = 46/56 (82%)

Query: 358 PHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKTEYT 413
           PH+CRLRDLTYSAPI VD+EYTRG + +V +DL IGRMPIML+S+KC+L    + T
Sbjct: 113 PHQCRLRDLTYSAPIFVDVEYTRGRKIIVHTDLEIGRMPIMLRSNKCILDGADDNT 168


>gi|328771672|gb|EGF81711.1| hypothetical protein BATDEDRAFT_29606 [Batrachochytrium dendrobatidis
            JAM81]
          Length = 1167

 Score =  328 bits (842), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 155/283 (54%), Positives = 200/283 (70%), Gaps = 22/283 (7%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ  RIDTL+Y +VY   PMV ++TI +  
Sbjct: 686  GLIPYPHHNQSPRNTYQCAMGKQAIGTIAYNQLTRIDTLLYLMVYPHHPMVRTRTIEMIG 745

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNAT+AVMSYSGYDIEDAL++NKAS+DRG+GRC V R S  ++K YPNQT DR
Sbjct: 746  FDKLPAGQNATVAVMSYSGYDIEDALVLNKASVDRGYGRCQVMRKSSTMIKSYPNQTFDR 805

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATP---- 1088
            +  P+L+  T +   R+  LD DGI   GE++   Q+++NK  PT +   +S  T     
Sbjct: 806  LADPVLDPLTGQVQERYNILDNDGICGVGERVYPNQIVINKQTPTETSPRVSAPTNGGGS 865

Query: 1089 ------------------EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRP 1130
                               +K  P+S+K    + +++VL+++N ED  LIK+L+RQTRRP
Sbjct: 866  DDESSAPMLGRAVDPSSIPFKNTPMSFKYPGDAVIDQVLLTTNEEDQTLIKVLIRQTRRP 925

Query: 1131 EIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            E+GDKFSSRHGQKGV G+IV QEDMPF+E+G+ PD+IMNPHG 
Sbjct: 926  ELGDKFSSRHGQKGVCGIIVSQEDMPFSENGVVPDVIMNPHGF 968



 Score =  273 bits (699), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 125/191 (65%), Positives = 157/191 (82%)

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
            +K  P+S+K    + +++VL+++N ED  LIK+L+RQTRRPE+GDKFSSRHGQKGV G+I
Sbjct: 885  FKNTPMSFKYPGDAVIDQVLLTTNEEDQTLIKVLIRQTRRPELGDKFSSRHGQKGVCGII 944

Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
            V QEDMPF+E+G+ PD+IMNPHG+PSRMTVGK+IELLAGKAGL  G  + GTAFGG+K+ 
Sbjct: 945  VSQEDMPFSENGVVPDVIMNPHGFPSRMTVGKMIELLAGKAGLFAGQVQYGTAFGGSKVE 1004

Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
            D+   L+ +GY+Y GKD+  SGITGE L+AYI+ GPVYYQKLKHMV DK+HARSRGPR  
Sbjct: 1005 DMSRILVENGYSYSGKDMLTSGITGEPLQAYIFFGPVYYQKLKHMVMDKMHARSRGPRAT 1064

Query: 1362 LTRQPTGRRWK 1372
            LTRQPT  R +
Sbjct: 1065 LTRQPTEGRSR 1075



 Score =  191 bits (485), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 124/362 (34%), Positives = 207/362 (57%), Gaps = 36/362 (9%)

Query: 2   LAEEQKNSVGPHFSCSMTLKHHPIGTPGPAYIFFLLEGLQA------------ILFLPLF 49
           L ++ K  V    +  M LKH+ +    P  +     G+++            + +L LF
Sbjct: 207 LEKKSKTIVACGKTGKMVLKHNSLTAEVPVTVIMKAMGVESDREIAELICGDDLKYLALF 266

Query: 50  K-QVDFGDS-KVVSLRELLSHVTYQKRLY----RLTVQPNWLGTVKAVHGT----YLTMV 99
              ++ G S K+ + R+ L ++  + ++     R+ ++ +W+   + +  T    ++ + 
Sbjct: 267 SPSLEEGASLKISTQRQALEYIGAKVKVTFKTNRVGIRRDWVEEARDLLATTVLAHVPVE 326

Query: 100 TDETSKLKDSPE---IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYS 156
            D+   L   P+   I    + VL  +KE G+V    D  D+  N  ++   Q  + ++ 
Sbjct: 327 ADDAGVLNFRPKAIYIALMIRRVLQAVKEGGIV----DDRDFIGNKRLELAGQLMSLLFE 382

Query: 157 DVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVNHMRQDT--ITNALTAAIQTGNWTIRR 214
           D   LF      I   +  ++    + +Q+D    + Q +  IT+ +  AI +GNW+++R
Sbjct: 383 D---LFKSWISAIKRAVDIQLKRTNRTSQYDAAAAVSQTSRFITDGMFRAISSGNWSVKR 439

Query: 215 FKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVSGPRSLQGSQWGMLCPS-DTPEG 273
           FKMER GVTQVLSRLSY+S LGM+TRI+SQFEKTRKV+GPRSLQ SQWGM+C S DT +G
Sbjct: 440 FKMERAGVTQVLSRLSYVSALGMLTRISSQFEKTRKVAGPRSLQTSQWGMICLSGDTEQG 499

Query: 274 EACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMFNGEEL-SSPGVYLVFVNGILA 332
           EACGL+KNLALMT+ITT++++ ++ K+ + +G E I + +G +L ++   +LVF+NG++ 
Sbjct: 500 EACGLIKNLALMTYITTDSNDVSLRKLAFVLGTEDINLVSGSDLYATSETFLVFLNGVIM 559

Query: 333 GI 334
           G+
Sbjct: 560 GV 561



 Score =  159 bits (402), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 79/139 (56%), Positives = 94/139 (67%), Gaps = 18/139 (12%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGI---RPGVTTHLEIAPFTLLGVCAGIE 744
           G  RFDD + +GKIEYLD NE  DS IAV  + +   +P  TTHLEIAPFT+LG  AG  
Sbjct: 630 GILRFDDLIAQGKIEYLDTNEETDSDIAVKINSVLIDQPN-TTHLEIAPFTILGAVAG-- 686

Query: 745 LLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRP 804
                       L+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ  RIDTL+Y +VY   P
Sbjct: 687 ------------LIPYPHHNQSPRNTYQCAMGKQAIGTIAYNQLTRIDTLLYLMVYPHHP 734

Query: 805 MVESKTIRITNFHKLPAGK 823
           MV ++TI +  F KLPAG+
Sbjct: 735 MVRTRTIEMIGFDKLPAGQ 753



 Score = 92.4 bits (228), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 43/86 (50%), Positives = 66/86 (76%), Gaps = 5/86 (5%)

Query: 453 VDDARDFLSSTCIAHIPVIN-----MRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGN 507
           V++ARD L++T +AH+PV       + F+ KA+Y+A+MIRR++ A+ +  ++DDRD+ GN
Sbjct: 308 VEEARDLLATTVLAHVPVEADDAGVLNFRPKAIYIALMIRRVLQAVKEGGIVDDRDFIGN 367

Query: 508 KRLELAGSLLSLMFEDVFKRFNSELK 533
           KRLELAG L+SL+FED+FK + S +K
Sbjct: 368 KRLELAGQLMSLLFEDLFKSWISAIK 393



 Score = 80.9 bits (198), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 32/58 (55%), Positives = 48/58 (82%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           DKW+L+ +FL+ KGLVK H+DSF+YF+  +IK ++QANA + SD+DP F+L++LDI +
Sbjct: 23  DKWRLLPAFLQTKGLVKQHLDSFNYFLETDIKLIVQANAKVDSDIDPHFFLRFLDIRI 80



 Score = 79.3 bits (194), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 35/56 (62%), Positives = 44/56 (78%)

Query: 355 QTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
           + TP ECRLRD+TY+  I VDIEY RG Q +V+ ++ IGRMPIML+SS CVL NK+
Sbjct: 95  ELTPQECRLRDITYAGTICVDIEYVRGKQVIVKRNIEIGRMPIMLKSSYCVLTNKS 150


>gi|393235423|gb|EJD42978.1| DNA-directed RNA polymerase [Auricularia delicata TFB-10046 SS5]
          Length = 1129

 Score =  328 bits (841), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 154/265 (58%), Positives = 193/265 (72%), Gaps = 5/265 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ NRIDTL+Y LVY Q+PMV+++TI +  
Sbjct: 669  GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLNRIDTLLYLLVYPQKPMVKTRTIELVG 728

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + +LPAGQNAT+AVMSYSGYDIEDALI+NKASLDRG+GRC V R +  ++++YPN THDR
Sbjct: 729  YERLPAGQNATVAVMSYSGYDIEDALILNKASLDRGYGRCQVMRKNVTMIRKYPNGTHDR 788

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPT----ISVSAISMATP 1088
             L    + +      R+  +  DGI   GE++    + VNK  PT     S +       
Sbjct: 789  -LADAPKDENGNVQKRYDIIQMDGIAGVGERVDPGDIYVNKQTPTNANDNSAAMDGAVAA 847

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
             Y+  P+SYK  V  Y++KV++S    D  L+K+L+RQTRRPE+GDKFSSRHGQKGV GL
Sbjct: 848  SYRNTPMSYKSPVAGYIDKVMLSETENDNTLVKVLIRQTRRPELGDKFSSRHGQKGVCGL 907

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            IV QEDMPFN+ G+CPD IMNPHG 
Sbjct: 908  IVNQEDMPFNDQGVCPDSIMNPHGF 932



 Score =  278 bits (712), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 123/191 (64%), Positives = 157/191 (82%)

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
            Y+  P+SYK  V  Y++KV++S    D  L+K+L+RQTRRPE+GDKFSSRHGQKGV GLI
Sbjct: 849  YRNTPMSYKSPVAGYIDKVMLSETENDNTLVKVLIRQTRRPELGDKFSSRHGQKGVCGLI 908

Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
            V QEDMPFN+ G+CPD IMNPHG+PSRMTVGK+IEL++GKAG++ G  + GTAFGG+K+ 
Sbjct: 909  VNQEDMPFNDQGVCPDSIMNPHGFPSRMTVGKMIELISGKAGVLTGKLRYGTAFGGSKVE 968

Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
            D+ + LI HG++Y GKD+  SGITGE+LEA+++ GP+YYQKLKHMV DK+HAR+RGPR  
Sbjct: 969  DMSKILIEHGFSYSGKDMLTSGITGESLEAFVFFGPIYYQKLKHMVMDKMHARARGPRAT 1028

Query: 1362 LTRQPTGRRWK 1372
            LTRQPT  R +
Sbjct: 1029 LTRQPTEGRSR 1039



 Score =  200 bits (509), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 104/206 (50%), Positives = 142/206 (68%), Gaps = 7/206 (3%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPK-IKAAQFDIVNH 191
           +D  DY  N  ++   Q  A ++ D   LF     ++   I DK++ K  + ++FD    
Sbjct: 343 VDDRDYVGNKRLELAGQLLALLFED---LFKRFNTELKSSI-DKVLKKPSRTSEFDAGQT 398

Query: 192 MR--QDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
           ++   D IT     AI TGNW+++RFKMER GVT VLSRLS+I+ LGMMTRI SQFEKTR
Sbjct: 399 LQFMGDHITAGFVRAISTGNWSLKRFKMERAGVTHVLSRLSFIAALGMMTRITSQFEKTR 458

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHI 309
           KVSGPR+LQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT+ +E+ ++++ + +G+E +
Sbjct: 459 KVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDVEEEPIIRLAFMLGVEDV 518

Query: 310 AMFNGEELSSPGVYLVFVNGILAGIT 335
            +  G E+     ++V VNG++ G+T
Sbjct: 519 CLATGAEMYEHNNFMVHVNGLIIGLT 544



 Score =  160 bits (405), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 80/139 (57%), Positives = 95/139 (68%), Gaps = 17/139 (12%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGI---RPGVTTHLEIAPFTLLGVCAGIE 744
           G   FD FL  G +EYLDVNE NDS IA+ E  I     G TTHLEI PFT+LG  AG  
Sbjct: 612 GKMNFDSFLKLGLVEYLDVNEENDSRIALYERDIVLTGSGRTTHLEIEPFTILGAVAG-- 669

Query: 745 LLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRP 804
                       L+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ NRIDTL+Y LVY Q+P
Sbjct: 670 ------------LIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLNRIDTLLYLLVYPQKP 717

Query: 805 MVESKTIRITNFHKLPAGK 823
           MV+++TI +  + +LPAG+
Sbjct: 718 MVKTRTIELVGYERLPAGQ 736



 Score =  106 bits (265), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 46/87 (52%), Positives = 69/87 (79%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           ++ P +DA + L++  +AH+PV N  F+ KA+++A M RR+++A+ D  ++DDRDY GNK
Sbjct: 293 RRPPWEDALEALATVILAHLPVENFDFRPKAVFVATMTRRVLMAVQDEKLVDDRDYVGNK 352

Query: 509 RLELAGSLLSLMFEDVFKRFNSELKET 535
           RLELAG LL+L+FED+FKRFN+ELK +
Sbjct: 353 RLELAGQLLALLFEDLFKRFNTELKSS 379



 Score = 88.2 bits (217), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/125 (38%), Positives = 76/125 (60%), Gaps = 9/125 (7%)

Query: 103 TSKLKDSPE-IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPL 161
           T+ L  +P+ + DKW L+ +FL+ KGLVK HIDSF+YF++V++  +++AN  + SDVDP 
Sbjct: 2   TADLSSTPQSVEDKWLLLPAFLRVKGLVKQHIDSFNYFVDVDLNNILKANNKVTSDVDPR 61

Query: 162 FYLKYLDIHVGIADKIIPKIKAAQFDIVNH---MRQDTITNALTAAIQTGNWTIRRFKME 218
           F+LKY DI VG  D+      A    I  H   +R  T +  +   +Q   +T  ++ ++
Sbjct: 62  FWLKYTDIRVGRPDRT--DADAIDRSITPHECRLRDTTYSAPILVTVQ---YTRGKYVVK 116

Query: 219 RQGVT 223
           +Q VT
Sbjct: 117 KQNVT 121



 Score = 81.6 bits (200), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 38/71 (53%), Positives = 49/71 (69%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQ 400
           V +P+  ++    R  TPHECRLRD TYSAPI V ++YTRG   V + ++ IGRMPIML+
Sbjct: 71  VGRPDRTDADAIDRSITPHECRLRDTTYSAPILVTVQYTRGKYVVKKQNVTIGRMPIMLR 130

Query: 401 SSKCVLRNKTE 411
           S+KCVL    E
Sbjct: 131 SNKCVLTGMNE 141


>gi|78190725|gb|ABB29684.1| RNA polymerase III second largest subunit [Leucosolenia sp. AR-2003]
          Length = 242

 Score =  328 bits (840), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 153/242 (63%), Positives = 195/242 (80%), Gaps = 8/242 (3%)

Query: 934  KQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGQNATIAVMSYSGYD 993
            KQA+G I  N + RIDTLMY LVY Q P+V+S+T+ + +F+ LPAGQNAT+AVMSYSGYD
Sbjct: 1    KQAIGTIALNXRQRIDTLMYVLVYPQAPLVKSRTLDLIHFNDLPAGQNATVAVMSYSGYD 60

Query: 994  IEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRILGPLLEADTRKPVYRHRALD 1053
            IEDALI+NKAS+DRGFGRC+VYR   C LK+Y NQ+ DRI+GP L+  T+ P+Y+H  LD
Sbjct: 61   IEDALILNKASVDRGFGRCIVYRKQTCTLKRYANQSFDRIMGPSLDEQTKVPIYKHSKLD 120

Query: 1054 QDGIVAPGEQICERQVLVNKSMPTISVSAIS--------MATPEYKEVPVSYKGSVPSYL 1105
            +DGI++PGEQI  RQVLVNKS+PT++  +++            +YKE P+++KG V  Y+
Sbjct: 121  RDGIISPGEQIENRQVLVNKSIPTVTNPSLANPPGPQQQQQPVQYKEAPMTWKGPVSPYI 180

Query: 1106 EKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPD 1165
            EKVL+SSN E+A+LIK+LLR TRRPEIGDKFSSRHGQKGV GLIV+QEDMPF++ GICPD
Sbjct: 181  EKVLISSNPEEAYLIKLLLRNTRRPEIGDKFSSRHGQKGVCGLIVQQEDMPFSDKGICPD 240

Query: 1166 II 1167
            +I
Sbjct: 241  VI 242



 Score =  130 bits (328), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 58/78 (74%), Positives = 70/78 (89%)

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
            YKE P+++KG V  Y+EKVL+SSN E+A+LIK+LLR TRRPEIGDKFSSRHGQKGV GLI
Sbjct: 165  YKEAPMTWKGPVSPYIEKVLISSNPEEAYLIKLLLRNTRRPEIGDKFSSRHGQKGVCGLI 224

Query: 1242 VEQEDMPFNESGICPDII 1259
            V+QEDMPF++ GICPD+I
Sbjct: 225  VQQEDMPFSDKGICPDVI 242



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/47 (55%), Positives = 36/47 (76%)

Query: 777 KQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
           KQA+G I  N + RIDTLMY LVY Q P+V+S+T+ + +F+ LPAG+
Sbjct: 1   KQAIGTIALNXRQRIDTLMYVLVYPQAPLVKSRTLDLIHFNDLPAGQ 47


>gi|46107920|ref|XP_381019.1| hypothetical protein FG00843.1 [Gibberella zeae PH-1]
          Length = 1157

 Score =  328 bits (840), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 151/266 (56%), Positives = 200/266 (75%), Gaps = 5/266 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+P+PHHNQ+PRNTYQCAMGKQA+G I YNQ NRIDTL+Y LVY QRPMV SKTI++  
Sbjct: 688  GLIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLYTLVYPQRPMVISKTIQLIG 747

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+ VMSYSGYDIEDAL++NKAS+DRGFGRC V+R     L++YPN   +R
Sbjct: 748  YDKLPAGQNATVVVMSYSGYDIEDALVLNKASVDRGFGRCQVFRKYTTELQKYPNGRRER 807

Query: 1033 ILGPLLEAD--TRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMAT 1087
            I  P +E +  +++ + +H ALD DG+   G ++   + +V K  P    S    +    
Sbjct: 808  IGDPEMEGEGKSKRRITKHEALDDDGLAIVGYKVHSGEAMVKKETPLDQTSTGIGLDRGP 867

Query: 1088 PEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
             E+++  VSY+ + P+Y++KV++S   +D  +IK+  RQTRRPE+GDKFSSRHGQKGV+G
Sbjct: 868  GEFRDSSVSYRIADPAYIDKVMISQTEKDTTVIKVQTRQTRRPELGDKFSSRHGQKGVVG 927

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            +IVEQED+PF++SG+ PDIIMNPHG 
Sbjct: 928  IIVEQEDLPFSDSGLSPDIIMNPHGF 953



 Score =  258 bits (659), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 119/199 (59%), Positives = 160/199 (80%), Gaps = 3/199 (1%)

Query: 1175 GCDR-ITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
            G DR   E+++  VSY+ + P+Y++KV++S   +D  +IK+  RQTRRPE+GDKFSSRHG
Sbjct: 862  GLDRGPGEFRDSSVSYRIADPAYIDKVMISQTEKDTTVIKVQTRQTRRPELGDKFSSRHG 921

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEG--NYKE 1291
            QKGV+G+IVEQED+PF++SG+ PDIIMNPHG+PSRMTVGKL+E L GKA ++ G  +Y  
Sbjct: 922  QKGVVGIIVEQEDLPFSDSGLSPDIIMNPHGFPSRMTVGKLLECLTGKASIIHGRPDYGF 981

Query: 1292 GTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKI 1351
            G AF    L ++ + L+ HG++++GKD F SGITGE LEAY+++GP+YYQ+LKHMVQDK+
Sbjct: 982  GDAFRSHPLEEMSQVLVDHGFSWEGKDYFTSGITGEPLEAYVFNGPIYYQRLKHMVQDKM 1041

Query: 1352 HARSRGPRVVLTRQPTGRR 1370
            H+RSRGPR +LTRQPT  R
Sbjct: 1042 HSRSRGPRAILTRQPTEGR 1060



 Score =  188 bits (478), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 107/235 (45%), Positives = 147/235 (62%), Gaps = 13/235 (5%)

Query: 118 LVLSFLKEKGLVKPH----IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGI 173
           + ++ +  + L+  H    +D  D+  N  ++   Q  + ++ D   LF     ++ + I
Sbjct: 345 IYVAMMTRRVLIAAHNPKLVDDRDFVGNKRLELAGQLLSLLFED---LFKQFTTNVRMSI 401

Query: 174 ADKIIPKI-KAAQFDIVNHMRQ--DTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLS 230
            DK + K  +A   D VN +    + I   +  AIQTGNW ++RF M R GVT VLSRLS
Sbjct: 402 -DKFLKKNNRAVPLDAVNMISNHANNIGYGINRAIQTGNWNVKRFNMNRAGVTHVLSRLS 460

Query: 231 YISGLGMMTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITT 290
           YI+ LGMMTRI+SQFEKTRKVSGPR+LQ SQWGMLC SDTPEGEACGLVKNLALMTHITT
Sbjct: 461 YIAALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCTSDTPEGEACGLVKNLALMTHITT 520

Query: 291 ENDEKNMLKIMYNI--GIEHIAMFNGEELSSPGVYLVFVNGILAGITCHHKEVCK 343
             DE+ + + ++ +  G+E I  F+G E+   G Y++ VNG    +T + K   +
Sbjct: 521 NVDEEPVKRWIFTLDAGVEPIRNFSGAEMHREGSYIIHVNGTPFALTRYPKRFAQ 575



 Score =  163 bits (412), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 83/147 (56%), Positives = 100/147 (68%), Gaps = 16/147 (10%)

Query: 677 RPTFLNMHQFLGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTL 736
           +P  L + Q +G   FDDFL  G +EYLDVNE ND+ I + E  +    TTHLEI PFT+
Sbjct: 625 KPEHLRLLQ-MGKATFDDFLNRGIVEYLDVNEENDALITIYEHQVTQS-TTHLEIEPFTV 682

Query: 737 LGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMY 796
           LG  AG              L+P+PHHNQ+PRNTYQCAMGKQA+G I YNQ NRIDTL+Y
Sbjct: 683 LGAVAG--------------LIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLY 728

Query: 797 NLVYAQRPMVESKTIRITNFHKLPAGK 823
            LVY QRPMV SKTI++  + KLPAG+
Sbjct: 729 TLVYPQRPMVISKTIQLIGYDKLPAGQ 755



 Score = 95.5 bits (236), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/117 (41%), Positives = 76/117 (64%), Gaps = 11/117 (9%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           ++  V++  D L++  IAH+P+  + F  KA+Y+A+M RR+++A  +P ++DDRD+ GNK
Sbjct: 314 RRNHVEEGLDALANLVIAHVPIEGLDFYPKAIYVAMMTRRVLIAAHNPKLVDDRDFVGNK 373

Query: 509 RLELAGSLLSLMFEDVFKRFNSE--------LKETNLS---GVVNLVSGWWFELKYG 554
           RLELAG LLSL+FED+FK+F +         LK+ N +     VN++S     + YG
Sbjct: 374 RLELAGQLLSLLFEDLFKQFTTNVRMSIDKFLKKNNRAVPLDAVNMISNHANNIGYG 430



 Score = 76.6 bits (187), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 32/52 (61%), Positives = 43/52 (82%)

Query: 355 QTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVL 406
           + TP ECRLRD+TY+API+VDI+Y R  QR+VR ++ +GRMP+ML+SS C L
Sbjct: 103 EVTPMECRLRDMTYAAPISVDIQYIRDKQRIVRKNVPLGRMPVMLKSSICRL 154



 Score = 66.2 bits (160), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/58 (51%), Positives = 45/58 (77%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           DK++L+ +FLK KGLVK HIDS+++F+  EIK +++AN  I S+VD  F+L++ DI V
Sbjct: 30  DKFQLLPAFLKVKGLVKQHIDSYNFFVEHEIKDIVRANRTIRSEVDSNFWLEFTDIRV 87


>gi|342879891|gb|EGU81124.1| hypothetical protein FOXB_08398 [Fusarium oxysporum Fo5176]
          Length = 1150

 Score =  328 bits (840), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 152/266 (57%), Positives = 198/266 (74%), Gaps = 5/266 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+P+PHHNQ+PRNTYQCAMGKQA+G I YNQ NRIDTL+Y LVY QRPMV SKTI++  
Sbjct: 673  GLIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLYTLVYPQRPMVISKTIQLIG 732

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+ VMSYSGYDIEDAL++NKAS+DRGFGRC V+R     L++YPN   +R
Sbjct: 733  YDKLPAGQNATVVVMSYSGYDIEDALVLNKASIDRGFGRCQVFRKYTTELQKYPNGRRER 792

Query: 1033 ILGPLLEAD--TRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMAT 1087
            I  P  E D   ++ + +H ALD DG+   G ++   + +V K  P    S    +    
Sbjct: 793  IGDPENEGDGKIKRRIAKHEALDDDGLAIVGYKVNSGEAMVKKETPLDQTSTGIGLDRGP 852

Query: 1088 PEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
             E+++  VSY+ + P+Y++KV++S   +D  +IK+  RQTRRPE+GDKFSSRHGQKGV+G
Sbjct: 853  AEFRDSSVSYRIADPAYIDKVMISQTEKDTTVIKVQTRQTRRPELGDKFSSRHGQKGVVG 912

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            +IVEQED+PF++SG+ PDIIMNPHG 
Sbjct: 913  IIVEQEDLPFSDSGLSPDIIMNPHGF 938



 Score =  258 bits (660), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 119/201 (59%), Positives = 161/201 (80%), Gaps = 3/201 (1%)

Query: 1175 GCDR-ITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
            G DR   E+++  VSY+ + P+Y++KV++S   +D  +IK+  RQTRRPE+GDKFSSRHG
Sbjct: 847  GLDRGPAEFRDSSVSYRIADPAYIDKVMISQTEKDTTVIKVQTRQTRRPELGDKFSSRHG 906

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEG--NYKE 1291
            QKGV+G+IVEQED+PF++SG+ PDIIMNPHG+PSRMTVGKL+E L GKA ++ G  +Y  
Sbjct: 907  QKGVVGIIVEQEDLPFSDSGLSPDIIMNPHGFPSRMTVGKLLECLTGKASIVHGRPDYGF 966

Query: 1292 GTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKI 1351
            G AF    L ++ + L+ HG++++GKD F SGITGE LEAY+++GP+YYQ+LKHMVQDK+
Sbjct: 967  GDAFRSHPLEEMSQVLVDHGFSWEGKDYFTSGITGEPLEAYVFNGPIYYQRLKHMVQDKM 1026

Query: 1352 HARSRGPRVVLTRQPTGRRWK 1372
            H+RSRGPR +LTRQPT  R +
Sbjct: 1027 HSRSRGPRAILTRQPTEGRSR 1047



 Score =  187 bits (474), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 93/158 (58%), Positives = 115/158 (72%), Gaps = 4/158 (2%)

Query: 188 IVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEK 247
           I NH   + I   +  AIQTGNWT++RF M R GVT VLSRLSYI+ LGMMTRI+SQFEK
Sbjct: 405 ISNHA--NNIGYGINRAIQTGNWTVKRFNMNRAGVTHVLSRLSYIAALGMMTRISSQFEK 462

Query: 248 TRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNI--G 305
           TRKVSGPR+LQ SQWGMLC SDTPEGEACGLVKNLALMTHITT  DE+ + + ++ +  G
Sbjct: 463 TRKVSGPRALQPSQWGMLCTSDTPEGEACGLVKNLALMTHITTNVDEEPVKRWIFTLDAG 522

Query: 306 IEHIAMFNGEELSSPGVYLVFVNGILAGITCHHKEVCK 343
           +E I  F+G E+   G Y++ +NG    +T + K   +
Sbjct: 523 VEPIRNFSGAEMHREGSYIIHINGTPFALTRYPKRFAQ 560



 Score =  163 bits (413), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 83/147 (56%), Positives = 100/147 (68%), Gaps = 16/147 (10%)

Query: 677 RPTFLNMHQFLGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTL 736
           +P  L + Q +G   FDDFL  G +EYLDVNE ND+ I + E  +    TTHLEI PFT+
Sbjct: 610 KPEHLRLLQ-MGKATFDDFLNRGIVEYLDVNEENDALITIYEDQVTQS-TTHLEIEPFTV 667

Query: 737 LGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMY 796
           LG  AG              L+P+PHHNQ+PRNTYQCAMGKQA+G I YNQ NRIDTL+Y
Sbjct: 668 LGAVAG--------------LIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLY 713

Query: 797 NLVYAQRPMVESKTIRITNFHKLPAGK 823
            LVY QRPMV SKTI++  + KLPAG+
Sbjct: 714 TLVYPQRPMVISKTIQLIGYDKLPAGQ 740



 Score = 94.7 bits (234), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 42/85 (49%), Positives = 64/85 (75%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           ++  V++  D L++  IAH+P+  + F  KA+Y+A M RR+++A  +P ++DDRD+ GNK
Sbjct: 299 RRNHVEEGLDALANLVIAHVPIEGLDFYPKAIYVAQMTRRVLIAAHNPKLVDDRDFVGNK 358

Query: 509 RLELAGSLLSLMFEDVFKRFNSELK 533
           RLELAG LLSL+FED+FK+F S +K
Sbjct: 359 RLELAGQLLSLLFEDLFKQFTSGVK 383



 Score = 78.2 bits (191), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 33/52 (63%), Positives = 43/52 (82%)

Query: 355 QTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVL 406
           + TP ECRLRD+TY+API VDI+Y R  QR+VR ++ +GRMP+ML+SSKC L
Sbjct: 88  EVTPMECRLRDMTYAAPIFVDIQYIRDKQRIVRKNVPLGRMPVMLKSSKCRL 139


>gi|168006293|ref|XP_001755844.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162693163|gb|EDQ79517.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1135

 Score =  327 bits (839), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 157/270 (58%), Positives = 203/270 (75%), Gaps = 9/270 (3%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG I YNQ  R+DTL+Y LVY QRP++ +K+I +  
Sbjct: 658  GLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLQRMDTLLYLLVYPQRPLLSTKSIELVG 717

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KL AGQNAT+AVMSYSGYDIEDA++MNK+SLDRGFGRC+V + S   +K+Y N+T DR
Sbjct: 718  YDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVIKKSVVPMKKYANRTADR 777

Query: 1033 ILGPLLEADTR---KPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAIS--MAT 1087
            I+ P L++  +   + V R +  D DGI A GE I    + VNK  P  + + ++  MA 
Sbjct: 778  IMAPELQSSAKGGVQVVARQQLQDHDGIAAVGEMIRPGDIYVNKQSPIDTRNNVNNPMAL 837

Query: 1088 PE--YKEVPVSYKGSV--PSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1143
            P+  YK  P +YKG+    + ++KVL++SN E+ F++K L+RQTRRPE+GDKFSSRHGQK
Sbjct: 838  PDSAYKRTPQTYKGAAGETAVVDKVLLTSNDENHFVVKCLIRQTRRPEVGDKFSSRHGQK 897

Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            GV G IV+QED PF+E GICPD+IMNPHG 
Sbjct: 898  GVCGTIVQQEDFPFSERGICPDLIMNPHGF 927



 Score =  268 bits (684), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 124/200 (62%), Positives = 156/200 (78%), Gaps = 7/200 (3%)

Query: 1180 TEYKEVPVSYKGSV--PSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV 1237
            + YK  P +YKG+    + ++KVL++SN E+ F++K L+RQTRRPE+GDKFSSRHGQKGV
Sbjct: 840  SAYKRTPQTYKGAAGETAVVDKVLLTSNDENHFVVKCLIRQTRRPEVGDKFSSRHGQKGV 899

Query: 1238 IGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFG- 1296
             G IV+QED PF+E GICPD+IMNPHG+PSRMTVGK+IELL GKAGL  G +  G+AFG 
Sbjct: 900  CGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGLHNGKFHYGSAFGE 959

Query: 1297 ----GTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIH 1352
                  K+  +   L++HG++Y GKD  YSGITG  L+AYI+ GP+YYQKLKHMV DK+H
Sbjct: 960  PSGHADKVSTISATLVKHGFSYSGKDFIYSGITGSPLQAYIFMGPIYYQKLKHMVLDKMH 1019

Query: 1353 ARSRGPRVVLTRQPTGRRWK 1372
            AR+RGPRVVLTRQPT  R +
Sbjct: 1020 ARARGPRVVLTRQPTEGRSR 1039



 Score =  221 bits (563), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 105/217 (48%), Positives = 151/217 (69%), Gaps = 3/217 (1%)

Query: 118 LVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKI 177
           +++  + E  L +  +D  DY  N  ++   Q  + ++ D   LF     ++   +   +
Sbjct: 322 VIIRKMLEAMLNREAVDDMDYVGNKRLELAGQLLSLLFED---LFKRMNAELKKSMDATL 378

Query: 178 IPKIKAAQFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGM 237
               ++ QFDI+  +R DT+TN L  AI +GNW ++RFKM+R+GVTQV+SRLS+I+ LG 
Sbjct: 379 SKANRSTQFDIIKLIRPDTLTNGLEHAISSGNWAVKRFKMDRKGVTQVVSRLSFIAALGH 438

Query: 238 MTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNM 297
           MTRI+SQFEKTRKVSGPR+LQ SQWGMLCP DTPEGEACGLVKNL+LMTH+TT+ +E  +
Sbjct: 439 MTRISSQFEKTRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLSLMTHVTTDEEEAPL 498

Query: 298 LKIMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
           +++   +G+E +++ +GEEL SP  YLVF NG + G+
Sbjct: 499 IELCTTLGVEDLSLLSGEELHSPKTYLVFFNGTILGV 535



 Score =  165 bits (418), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 80/136 (58%), Positives = 97/136 (71%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           GF+ FDDFL EG +EYLDVNE N+S IA+ E    P  TTH+EI PFT+LGVCAG     
Sbjct: 605 GFRTFDDFLREGLVEYLDVNEENNSLIALYEGDATPD-TTHIEIEPFTILGVCAG----- 658

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQAMG I YNQ  R+DTL+Y LVY QRP++ 
Sbjct: 659 ---------LIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLQRMDTLLYLLVYPQRPLLS 709

Query: 808 SKTIRITNFHKLPAGK 823
           +K+I +  + KL AG+
Sbjct: 710 TKSIELVGYDKLGAGQ 725



 Score =  105 bits (263), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 48/86 (55%), Positives = 67/86 (77%)

Query: 450 KTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKR 509
           K  VD+ARD L++  +AH+PV    F+ K +YLAV+IR+M+ A+ + + +DD DY GNKR
Sbjct: 288 KVRVDEARDILATVVLAHVPVHQFDFRAKCIYLAVIIRKMLEAMLNREAVDDMDYVGNKR 347

Query: 510 LELAGSLLSLMFEDVFKRFNSELKET 535
           LELAG LLSL+FED+FKR N+ELK++
Sbjct: 348 LELAGQLLSLLFEDLFKRMNAELKKS 373



 Score = 81.3 bits (199), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 40/61 (65%), Positives = 48/61 (78%), Gaps = 2/61 (3%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANAN--IYSDVDPLFYLKYLDIHV 171
           DK++L+ SFLK +GLVK HIDSF+YFIN EIKK++ A  N  + SDVD  FYLKYLDI V
Sbjct: 24  DKFQLLPSFLKVRGLVKQHIDSFNYFINCEIKKIIHAQGNEKVTSDVDANFYLKYLDIFV 83

Query: 172 G 172
           G
Sbjct: 84  G 84



 Score = 80.5 bits (197), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 39/71 (54%), Positives = 52/71 (73%), Gaps = 3/71 (4%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQ 400
           V +P +E+ + Y    TP +CRLRD+TYSAPI+VD+EYTRG +  V   + IGRMPIML+
Sbjct: 83  VGEPCVEQDYIY-EPITPQQCRLRDMTYSAPISVDVEYTRGKE--VVGSINIGRMPIMLR 139

Query: 401 SSKCVLRNKTE 411
           SS+C+L  K E
Sbjct: 140 SSRCILAGKNE 150


>gi|389624163|ref|XP_003709735.1| DNA-directed RNA polymerase III subunit RPC2 [Magnaporthe oryzae
            70-15]
 gi|351649264|gb|EHA57123.1| DNA-directed RNA polymerase III subunit RPC2 [Magnaporthe oryzae
            70-15]
 gi|440467179|gb|ELQ36417.1| DNA-directed RNA polymerase III subunit RPC2 [Magnaporthe oryzae Y34]
 gi|440480743|gb|ELQ61392.1| DNA-directed RNA polymerase III subunit RPC2 [Magnaporthe oryzae
            P131]
          Length = 1158

 Score =  327 bits (839), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 153/264 (57%), Positives = 196/264 (74%), Gaps = 3/264 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+P+PHHNQ+PRNTYQCAMGKQA+G I YNQ NRIDTL+Y LVY QRPMV +KTI + +
Sbjct: 691  GLIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLYTLVYPQRPMVITKTIELIH 750

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+ VMSYSGYDIEDAL++NKAS DRGFGRC V+R     L+ Y N   ++
Sbjct: 751  YDKLPAGQNATVVVMSYSGYDIEDALVLNKASCDRGFGRCQVFRKHTAELQTYANNKSEK 810

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPE 1089
            I GP ++  T KP  ++ A+D DG+   G +I   +V++ K  P    S      + + +
Sbjct: 811  ISGPEIDERTGKPAEKYAAIDSDGLARVGYRIHSGEVMLRKLTPIDQGSTGIGNDVGSND 870

Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
            Y+E  +SY+ S PSY++KV+VS   ++  L K+  RQTRRPE+GDKFSSRHGQKGV+G+I
Sbjct: 871  YRETSLSYRVSNPSYIDKVMVSQTEKEHILAKVQTRQTRRPELGDKFSSRHGQKGVVGII 930

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
            VEQEDMPF +SG+ PDIIMNPHG 
Sbjct: 931  VEQEDMPFADSGLVPDIIMNPHGF 954



 Score =  257 bits (657), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 118/192 (61%), Positives = 154/192 (80%), Gaps = 2/192 (1%)

Query: 1181 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1240
            +Y+E  +SY+ S PSY++KV+VS   ++  L K+  RQTRRPE+GDKFSSRHGQKGV+G+
Sbjct: 870  DYRETSLSYRVSNPSYIDKVMVSQTEKEHILAKVQTRQTRRPELGDKFSSRHGQKGVVGI 929

Query: 1241 IVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGN--YKEGTAFGGT 1298
            IVEQEDMPF +SG+ PDIIMNPHG+PSRMTVGKL E L GKA ++EGN  Y  G AF   
Sbjct: 930  IVEQEDMPFADSGLVPDIIMNPHGFPSRMTVGKLFECLTGKASIVEGNRRYGYGDAFRSH 989

Query: 1299 KLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGP 1358
             + ++ + LI  G++++GKD F SGITGE LEAY+++GP+YYQ+LKHMVQDK+H+R++GP
Sbjct: 990  PVEEMGKALIERGFSWEGKDYFTSGITGEPLEAYLFNGPIYYQRLKHMVQDKMHSRAKGP 1049

Query: 1359 RVVLTRQPTGRR 1370
            R +LTRQPT  R
Sbjct: 1050 RAILTRQPTEGR 1061



 Score =  199 bits (506), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 124/292 (42%), Positives = 170/292 (58%), Gaps = 25/292 (8%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKI-KAAQFDIVNH 191
           +D  D+  N  ++   Q  + ++ D   LF    +D+   I DK++ K  +   FD +N 
Sbjct: 367 VDDRDFVGNKRLELAGQMLSLLFED---LFKKFLVDLRFNI-DKVLRKSNRGVAFDPLNS 422

Query: 192 MRQDT--ITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
           +   +  IT  +  AI +GNWT++RF M R GVT VLSRLSYIS LGMMTRI+SQFEKTR
Sbjct: 423 ITATSGHITAGMNRAISSGNWTVKRFNMNRAGVTHVLSRLSYISALGMMTRISSQFEKTR 482

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITT--ENDEKNMLKIMYNIGIE 307
           KVSGPR+LQ SQWGMLC SDTPEGEACGLVKNLALMTHITT  E D      +  + G E
Sbjct: 483 KVSGPRALQPSQWGMLCTSDTPEGEACGLVKNLALMTHITTHFEEDPVKEWILAMDSGAE 542

Query: 308 HIAMFNGEELSSPGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHECRLRDLT 367
            ++ F+G E+ +PG +++ VNG    +T + +E CK      F  TR         R   
Sbjct: 543 ALSNFSGSEMHTPGTFVITVNGTPFALTWNPEEFCK-----KFRDTR---------RKGE 588

Query: 368 YSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKTEYTSSSRRA 419
            SA +++ I Y   +  +   +  I R  I++++   V R K E+  S R+ 
Sbjct: 589 LSAFVSISINYHFATVNIATDEGRICRPYIIIENG--VQRIKEEHLESLRQG 638



 Score =  158 bits (400), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 78/136 (57%), Positives = 94/136 (69%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G K FD FL  G +EYLDVNE  D+ +A+ E  + P   THLEI PFT+LG  AG     
Sbjct: 638 GDKDFDYFLNNGIVEYLDVNEEQDTLVALYEKDVTPA-HTHLEIEPFTILGAVAG----- 691

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+P+PHHNQ+PRNTYQCAMGKQA+G I YNQ NRIDTL+Y LVY QRPMV 
Sbjct: 692 ---------LIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLYTLVYPQRPMVI 742

Query: 808 SKTIRITNFHKLPAGK 823
           +KTI + ++ KLPAG+
Sbjct: 743 TKTIELIHYDKLPAGQ 758



 Score = 92.8 bits (229), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/132 (34%), Positives = 82/132 (62%), Gaps = 5/132 (3%)

Query: 407 RNKTEYTSSSRRASTSSVTMHSQRTSPLLSCKKLRQKRFQTY-----KKTPVDDARDFLS 461
           R + ++  +   A+ + V    Q    + S  K+   RF+T      ++   ++  + L+
Sbjct: 270 RYQDDFAVNFDDAARAGVFTQQQSLEYIGSRVKMGSNRFKTPGGQAPRRNNAEEGLEALA 329

Query: 462 STCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGSLLSLMF 521
           +  I H+P++++ F  KA Y+A+M+RR+++A  D  ++DDRD+ GNKRLELAG +LSL+F
Sbjct: 330 NMIIGHVPILDLDFYPKACYVAMMVRRVLMAAHDHKLVDDRDFVGNKRLELAGQMLSLLF 389

Query: 522 EDVFKRFNSELK 533
           ED+FK+F  +L+
Sbjct: 390 EDLFKKFLVDLR 401



 Score = 77.8 bits (190), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 34/60 (56%), Positives = 49/60 (81%)

Query: 113 RDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           +DKW+L+ +FLK KGLVK HIDSF++FIN EIK++++AN  + SDV+  F+L++ DI VG
Sbjct: 30  QDKWQLLPAFLKVKGLVKQHIDSFNFFINTEIKEIVKANRIVRSDVESGFFLEFTDIRVG 89



 Score = 72.4 bits (176), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/52 (57%), Positives = 41/52 (78%)

Query: 355 QTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVL 406
           + +P ECRLRD+TY+API VDI Y R  ++V+R ++ +GRMPIML+SS C L
Sbjct: 104 EVSPMECRLRDMTYAAPIKVDIAYFRDKKKVLRKNVTLGRMPIMLKSSNCWL 155


>gi|408388464|gb|EKJ68148.1| hypothetical protein FPSE_11615 [Fusarium pseudograminearum CS3096]
          Length = 1157

 Score =  327 bits (839), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 151/266 (56%), Positives = 199/266 (74%), Gaps = 5/266 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+P+PHHNQ+PRNTYQCAMGKQA+G I YNQ NRIDTL+Y LVY QRPMV SKTI++  
Sbjct: 688  GLIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLYTLVYPQRPMVISKTIQLIG 747

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+ VMSYSGYDIEDAL++NKAS+DRGFGRC V+R     L++YPN   +R
Sbjct: 748  YDKLPAGQNATVVVMSYSGYDIEDALVLNKASVDRGFGRCQVFRKYTTELQKYPNGRRER 807

Query: 1033 ILGPLLEAD--TRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMAT 1087
            I  P +E +   ++ + +H ALD DG+   G ++   + +V K  P    S    +    
Sbjct: 808  IGDPEMEGEGKNKRRITKHEALDDDGLAIVGYKVHSGEAMVKKETPLDQTSTGIGLDRGP 867

Query: 1088 PEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
             E+++  VSY+ + P+Y++KV++S   +D  +IK+  RQTRRPE+GDKFSSRHGQKGV+G
Sbjct: 868  GEFRDSSVSYRIADPAYIDKVMISQTEKDTTVIKVQTRQTRRPELGDKFSSRHGQKGVVG 927

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            +IVEQED+PF++SG+ PDIIMNPHG 
Sbjct: 928  IIVEQEDLPFSDSGLSPDIIMNPHGF 953



 Score =  258 bits (659), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 119/199 (59%), Positives = 160/199 (80%), Gaps = 3/199 (1%)

Query: 1175 GCDR-ITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
            G DR   E+++  VSY+ + P+Y++KV++S   +D  +IK+  RQTRRPE+GDKFSSRHG
Sbjct: 862  GLDRGPGEFRDSSVSYRIADPAYIDKVMISQTEKDTTVIKVQTRQTRRPELGDKFSSRHG 921

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEG--NYKE 1291
            QKGV+G+IVEQED+PF++SG+ PDIIMNPHG+PSRMTVGKL+E L GKA ++ G  +Y  
Sbjct: 922  QKGVVGIIVEQEDLPFSDSGLSPDIIMNPHGFPSRMTVGKLLECLTGKASIIHGRPDYGF 981

Query: 1292 GTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKI 1351
            G AF    L ++ + L+ HG++++GKD F SGITGE LEAY+++GP+YYQ+LKHMVQDK+
Sbjct: 982  GDAFRSHPLEEMSQVLVDHGFSWEGKDYFTSGITGEPLEAYVFNGPIYYQRLKHMVQDKM 1041

Query: 1352 HARSRGPRVVLTRQPTGRR 1370
            H+RSRGPR +LTRQPT  R
Sbjct: 1042 HSRSRGPRAILTRQPTEGR 1060



 Score =  188 bits (478), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 107/235 (45%), Positives = 147/235 (62%), Gaps = 13/235 (5%)

Query: 118 LVLSFLKEKGLVKPH----IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGI 173
           + ++ +  + L+  H    +D  D+  N  ++   Q  + ++ D   LF     ++ + I
Sbjct: 345 IYVAMMTRRVLIAAHNPKLVDDRDFVGNKRLELAGQLLSLLFED---LFKQFTTNVRMSI 401

Query: 174 ADKIIPKI-KAAQFDIVNHMRQ--DTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLS 230
            DK + K  +A   D VN +    + I   +  AIQTGNW ++RF M R GVT VLSRLS
Sbjct: 402 -DKFLKKNNRAVPLDAVNMISNHANNIGYGINRAIQTGNWNVKRFNMNRAGVTHVLSRLS 460

Query: 231 YISGLGMMTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITT 290
           YI+ LGMMTRI+SQFEKTRKVSGPR+LQ SQWGMLC SDTPEGEACGLVKNLALMTHITT
Sbjct: 461 YIAALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCTSDTPEGEACGLVKNLALMTHITT 520

Query: 291 ENDEKNMLKIMYNI--GIEHIAMFNGEELSSPGVYLVFVNGILAGITCHHKEVCK 343
             DE+ + + ++ +  G+E I  F+G E+   G Y++ VNG    +T + K   +
Sbjct: 521 NVDEEPVKRWIFTLDAGVEPIRNFSGAEMHREGSYIIHVNGTPFALTRYPKRFAQ 575



 Score =  163 bits (412), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 83/147 (56%), Positives = 100/147 (68%), Gaps = 16/147 (10%)

Query: 677 RPTFLNMHQFLGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTL 736
           +P  L + Q +G   FDDFL  G +EYLDVNE ND+ I + E  +    TTHLEI PFT+
Sbjct: 625 KPEHLRLLQ-MGKATFDDFLNRGIVEYLDVNEENDALITIYEHQVTQS-TTHLEIEPFTV 682

Query: 737 LGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMY 796
           LG  AG              L+P+PHHNQ+PRNTYQCAMGKQA+G I YNQ NRIDTL+Y
Sbjct: 683 LGAVAG--------------LIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLY 728

Query: 797 NLVYAQRPMVESKTIRITNFHKLPAGK 823
            LVY QRPMV SKTI++  + KLPAG+
Sbjct: 729 TLVYPQRPMVISKTIQLIGYDKLPAGQ 755



 Score = 95.5 bits (236), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/117 (41%), Positives = 76/117 (64%), Gaps = 11/117 (9%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           ++  V++  D L++  IAH+P+  + F  KA+Y+A+M RR+++A  +P ++DDRD+ GNK
Sbjct: 314 RRNHVEEGLDALANLVIAHVPIEGLDFYPKAIYVAMMTRRVLIAAHNPKLVDDRDFVGNK 373

Query: 509 RLELAGSLLSLMFEDVFKRFNSE--------LKETNLS---GVVNLVSGWWFELKYG 554
           RLELAG LLSL+FED+FK+F +         LK+ N +     VN++S     + YG
Sbjct: 374 RLELAGQLLSLLFEDLFKQFTTNVRMSIDKFLKKNNRAVPLDAVNMISNHANNIGYG 430



 Score = 76.6 bits (187), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 32/52 (61%), Positives = 43/52 (82%)

Query: 355 QTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVL 406
           + TP ECRLRD+TY+API+VDI+Y R  QR+VR ++ +GRMP+ML+SS C L
Sbjct: 103 EVTPMECRLRDMTYAAPISVDIQYIRDKQRIVRKNVPLGRMPVMLKSSICRL 154



 Score = 66.2 bits (160), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/58 (51%), Positives = 45/58 (77%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           DK++L+ +FLK KGLVK HIDS+++F+  EIK +++AN  I S+VD  F+L++ DI V
Sbjct: 30  DKFQLLPAFLKVKGLVKQHIDSYNFFVEHEIKDIVRANRTIRSEVDSNFWLEFTDIRV 87


>gi|400597534|gb|EJP65264.1| RNA polymerase Rpb2 [Beauveria bassiana ARSEF 2860]
          Length = 1157

 Score =  327 bits (838), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 150/266 (56%), Positives = 198/266 (74%), Gaps = 5/266 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+P+PHHNQ+PRNTYQCAMGKQA+G I YNQ NRIDTL+Y LVY QRPMV SKTI++ N
Sbjct: 688  GLIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLYTLVYPQRPMVISKTIQLVN 747

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+ VMSYSGYDIEDAL++NK S+DRGFGRC V+R     L++YPN   +R
Sbjct: 748  YDKLPAGQNATVVVMSYSGYDIEDALVLNKGSIDRGFGRCQVFRKYTTELQKYPNGRRER 807

Query: 1033 ILGPLLE--ADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMP---TISVSAISMAT 1087
            I  P+ E   D RK   +H+ALD DG+   G ++   Q ++ K  P   T +   +   +
Sbjct: 808  IGDPVNEGDGDQRKRTEKHKALDDDGLAMVGGRVFSGQSMIKKETPLDLTTTGIGLDRGS 867

Query: 1088 PEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
             ++++  V+Y+   P+Y++KV++S   +D  ++K+  RQTRRPE+GDKFSSRHGQKGV+G
Sbjct: 868  SDFRDSAVNYRIPDPAYIDKVMISHTEKDTTVVKVQTRQTRRPELGDKFSSRHGQKGVVG 927

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            +IVE EDMPF ++G+ PDIIMNPHG 
Sbjct: 928  IIVEHEDMPFADNGLTPDIIMNPHGF 953



 Score =  251 bits (641), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 114/201 (56%), Positives = 159/201 (79%), Gaps = 3/201 (1%)

Query: 1175 GCDR-ITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
            G DR  +++++  V+Y+   P+Y++KV++S   +D  ++K+  RQTRRPE+GDKFSSRHG
Sbjct: 862  GLDRGSSDFRDSAVNYRIPDPAYIDKVMISHTEKDTTVVKVQTRQTRRPELGDKFSSRHG 921

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEG--NYKE 1291
            QKGV+G+IVE EDMPF ++G+ PDIIMNPHG+PSRMTVGKL+E L GKA ++ G  +Y  
Sbjct: 922  QKGVVGIIVEHEDMPFADNGLTPDIIMNPHGFPSRMTVGKLLECLTGKASIIHGRPDYGF 981

Query: 1292 GTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKI 1351
            G AF    L ++ + L+ HG++++GKD F SG+TGE LEAYI++GP+YYQ+LKHMVQDK+
Sbjct: 982  GDAFRSHPLEEMSQVLLDHGFSWEGKDYFTSGLTGEPLEAYIFNGPIYYQRLKHMVQDKM 1041

Query: 1352 HARSRGPRVVLTRQPTGRRWK 1372
            H+R+RGPR +LTRQPT  R +
Sbjct: 1042 HSRARGPRAILTRQPTEGRSR 1062



 Score =  197 bits (500), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 106/215 (49%), Positives = 143/215 (66%), Gaps = 9/215 (4%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKI-KAAQFDIVNH 191
           +D  D+  N  ++   Q  + ++ D   LF    +++ + I DK + K  +A   D VN 
Sbjct: 364 VDDRDFVGNKRLELAGQLLSLLFED---LFKRFMVEVKMSI-DKFLKKNNRAVPLDAVNM 419

Query: 192 MRQ--DTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
           +    + I   +  AIQTGNW+++RF M R GVT VLSRLSYI+ LGMMTRI+SQFEKTR
Sbjct: 420 ISNHANNIGMGINRAIQTGNWSVKRFNMNRAGVTHVLSRLSYIAALGMMTRISSQFEKTR 479

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMY--NIGIE 307
           KVSGPR+LQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT  DE+ + + ++  ++G+E
Sbjct: 480 KVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTNVDEEPVKRWVFTLDVGVE 539

Query: 308 HIAMFNGEELSSPGVYLVFVNGILAGITCHHKEVC 342
            I  F+G E+   G Y++ +NG    +T + K  C
Sbjct: 540 PIRNFSGAEMHREGSYIIHINGTPFALTRYPKRFC 574



 Score =  167 bits (423), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 85/147 (57%), Positives = 101/147 (68%), Gaps = 16/147 (10%)

Query: 677 RPTFLNMHQFLGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTL 736
           +P  L + Q LG   FDDFL  G +EYLDVNE  D+ + + E  I  G TTHLEI PFT+
Sbjct: 625 KPEHLRLLQ-LGKVTFDDFLRNGVVEYLDVNEEQDALVTIYEDKITMG-TTHLEIEPFTI 682

Query: 737 LGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMY 796
           LG  AG              L+P+PHHNQ+PRNTYQCAMGKQA+G I YNQ NRIDTL+Y
Sbjct: 683 LGAVAG--------------LIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLY 728

Query: 797 NLVYAQRPMVESKTIRITNFHKLPAGK 823
            LVY QRPMV SKTI++ N+ KLPAG+
Sbjct: 729 TLVYPQRPMVISKTIQLVNYDKLPAGQ 755



 Score = 95.9 bits (237), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/130 (38%), Positives = 81/130 (62%), Gaps = 3/130 (2%)

Query: 407 RNKTEYTSSSRRASTSSVTMHSQRTSPLLSCKKLRQKRFQ---TYKKTPVDDARDFLSST 463
           R + E+  +   A+ + V    Q    + +  K+  +R Q     ++  V++  D L++ 
Sbjct: 269 RYQDEFLINFDEATKAGVFTQHQALEYIGTRVKMGSRRGQFGPQVRRNNVEEGLDALANL 328

Query: 464 CIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGSLLSLMFED 523
            IAH+P+  + F  KA+Y+A+M R++++A  D  ++DDRD+ GNKRLELAG LLSL+FED
Sbjct: 329 IIAHVPIEGLDFYPKAIYVAMMTRKVLMAAQDSKLVDDRDFVGNKRLELAGQLLSLLFED 388

Query: 524 VFKRFNSELK 533
           +FKRF  E+K
Sbjct: 389 LFKRFMVEVK 398



 Score = 73.2 bits (178), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/51 (58%), Positives = 41/51 (80%)

Query: 356 TTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVL 406
            TP ECRLRD++Y+API VDI Y R  Q+++R ++ +GRMP+ML+SSKC L
Sbjct: 104 VTPMECRLRDMSYAAPILVDIVYIRDKQKIIRRNVSLGRMPVMLRSSKCRL 154



 Score = 68.2 bits (165), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 45/58 (77%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           DK++L+ +FLK KGLVK HIDS+++F+  EIK +++AN  I SDVD  F+L++ DI V
Sbjct: 30  DKFQLLPAFLKVKGLVKQHIDSYNFFVEHEIKDIVRANRTIRSDVDSNFWLEFTDIRV 87


>gi|149238948|ref|XP_001525350.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Lodderomyces
            elongisporus NRRL YB-4239]
 gi|146450843|gb|EDK45099.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Lodderomyces
            elongisporus NRRL YB-4239]
          Length = 1157

 Score =  327 bits (838), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 156/268 (58%), Positives = 197/268 (73%), Gaps = 8/268 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ  RIDTL+Y +VY Q+PMV++KTI + N
Sbjct: 693  GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYFMVYPQQPMVKTKTIELIN 752

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+AVMSYSGYDIEDAL++NK+SLDRGFGRC V R +   LK+YPN T D 
Sbjct: 753  YDKLPAGQNATVAVMSYSGYDIEDALVLNKSSLDRGFGRCQVVRKNTVQLKKYPNHTKD- 811

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMA------ 1086
            IL  +   +  +P++ H+AL  DG+   G +I   QV  NK +PT S  +          
Sbjct: 812  ILSGMRVDENNEPIFPHQALGPDGLGEVGSRIENGQVFANKFVPTNSGESTFAGGMQQQP 871

Query: 1087 -TPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV 1145
                ++E    YKG  PSY+++V++S +  D  L+K+LLRQTRRPE+GDKFSSRHGQKGV
Sbjct: 872  QAESHREAAQYYKGPEPSYVDQVMMSVSDNDQALVKVLLRQTRRPELGDKFSSRHGQKGV 931

Query: 1146 IGLIVEQEDMPFNESGICPDIIMNPHGL 1173
             G+IV+ ED+PFN+ GI PDIIMNPHG 
Sbjct: 932  CGIIVQHEDLPFNDDGISPDIIMNPHGF 959



 Score =  272 bits (696), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 123/201 (61%), Positives = 162/201 (80%)

Query: 1172 GLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSR 1231
            G++   +   ++E    YKG  PSY+++V++S +  D  L+K+LLRQTRRPE+GDKFSSR
Sbjct: 866  GMQQQPQAESHREAAQYYKGPEPSYVDQVMMSVSDNDQALVKVLLRQTRRPELGDKFSSR 925

Query: 1232 HGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKE 1291
            HGQKGV G+IV+ ED+PFN+ GI PDIIMNPHG+PSRMTVGK+IEL++GKAG++ G+ + 
Sbjct: 926  HGQKGVCGIIVQHEDLPFNDDGISPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGSLEY 985

Query: 1292 GTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKI 1351
            GT FGG+KL D+ + L+  G++Y GKD+ YSGITGE L+AYI+ GP+YYQKLKHMV DK+
Sbjct: 986  GTCFGGSKLEDMSKILVSKGFSYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKM 1045

Query: 1352 HARSRGPRVVLTRQPTGRRWK 1372
            HAR+RGPR VLTRQPT  R +
Sbjct: 1046 HARARGPRAVLTRQPTEGRSR 1066



 Score =  189 bits (479), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 106/206 (51%), Positives = 136/206 (66%), Gaps = 7/206 (3%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPK-IKAAQFD--IV 189
           +D  DY  N  ++   Q  + ++ D   LF     D    I DKI+ K  +  +FD  + 
Sbjct: 367 VDDRDYVGNKRLELAGQLMSLLFED---LFKKFNSDFKANI-DKILKKPSRTTEFDALLS 422

Query: 190 NHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
            ++  + IT  L  AI TGNW+++RFKMER GVT VLSRLSYIS LGMMTRI+SQFEK+R
Sbjct: 423 INIHSNNITMGLNRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSR 482

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHI 309
           KVSGPR+LQ SQ+GMLC +DTPEGEACGLVKNLALMTHITT+++E  + K+   +G E I
Sbjct: 483 KVSGPRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEELPIKKLCIALGCESI 542

Query: 310 AMFNGEELSSPGVYLVFVNGILAGIT 335
              +   L   G + VF+NG L G T
Sbjct: 543 LGLDSSTLHVDGNFGVFLNGTLIGAT 568



 Score =  162 bits (410), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 80/136 (58%), Positives = 95/136 (69%), Gaps = 17/136 (12%)

Query: 691 RFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRP---GVTTHLEIAPFTLLGVCAGIELLQ 747
           +FDDFL EG +EYLDVNE NDS IA+ E  I        THLEI PFT+LG  AG     
Sbjct: 639 QFDDFLREGLVEYLDVNEENDSLIALYEKDIGSNANATVTHLEIEPFTVLGAVAG----- 693

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ  RIDTL+Y +VY Q+PMV+
Sbjct: 694 ---------LIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYFMVYPQQPMVK 744

Query: 808 SKTIRITNFHKLPAGK 823
           +KTI + N+ KLPAG+
Sbjct: 745 TKTIELINYDKLPAGQ 760



 Score =  104 bits (260), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 49/114 (42%), Positives = 82/114 (71%), Gaps = 1/114 (0%)

Query: 421 TSSVTMHSQRTSPLLSCKKLRQ-KRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKA 479
            + + + +Q+ + L   K+++  +R    K + + +  + +++T +AH+ V N++FK KA
Sbjct: 288 AARLEVFTQQQALLYLGKRVKTIRRAGAPKLSQLQEGIEAIATTIVAHLTVSNLQFKEKA 347

Query: 480 MYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
            Y+A+M RR+V+A+ +P M+DDRDY GNKRLELAG L+SL+FED+FK+FNS+ K
Sbjct: 348 FYMAMMARRVVMAMHNPKMVDDRDYVGNKRLELAGQLMSLLFEDLFKKFNSDFK 401



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/69 (55%), Positives = 52/69 (75%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGI 173
           DKW L+ +FLK KGLVK H+DSF+YF++ ++KK+++AN+ + SDVDP FY+KYLDI VG 
Sbjct: 39  DKWNLLPAFLKIKGLVKQHLDSFNYFVDTDLKKILKANSLVLSDVDPDFYVKYLDIRVGH 98

Query: 174 ADKIIPKIK 182
                P  K
Sbjct: 99  KSTSAPGTK 107



 Score = 82.8 bits (203), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 42/87 (48%), Positives = 55/87 (63%), Gaps = 10/87 (11%)

Query: 320 PGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYT 379
           P  Y+ +++     I   HK    P  +E         PHECRLRDLTYSAPI VD+EYT
Sbjct: 85  PDFYVKYLD-----IRVGHKSTSAPGTKEVI-----LPPHECRLRDLTYSAPIYVDVEYT 134

Query: 380 RGSQRVVRSDLVIGRMPIMLQSSKCVL 406
           RG + +  +DL IGRMP+ML+S+KC+L
Sbjct: 135 RGRKIIRHNDLEIGRMPVMLRSNKCML 161


>gi|66806019|ref|XP_636731.1| RNA polymerase III, second largest subunit [Dictyostelium discoideum
            AX4]
 gi|74852634|sp|Q54IZ9.1|RPC2_DICDI RecName: Full=DNA-directed RNA polymerase III subunit rpc2; Short=RNA
            polymerase III subunit C2; AltName: Full=DNA-directed RNA
            polymerase III subunit B; Contains: RecName: Full=Ddi
            rpc2 intein
 gi|60465151|gb|EAL63250.1| RNA polymerase III, second largest subunit [Dictyostelium discoideum
            AX4]
          Length = 1608

 Score =  327 bits (838), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 159/267 (59%), Positives = 198/267 (74%), Gaps = 11/267 (4%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ  RIDTL+Y LV+ QRP+ +++TI + N
Sbjct: 1150 GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLTRIDTLLYLLVHTQRPLCQTRTIDLLN 1209

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            ++KLPAG NAT+AVMSYSGYDIEDAL+MNKASLDRGFGRC+V +     +K++ N T DR
Sbjct: 1210 WYKLPAGHNATVAVMSYSGYDIEDALVMNKASLDRGFGRCIVLKKQVTSIKKHGNDTSDR 1269

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPE--- 1089
            I  P    D R+P Y    LD DGI  PGE   + Q+LVNK  P  ++ A     PE   
Sbjct: 1270 IFPP-TPNDLRQPKY--GLLDSDGIAKPGELAQKGQILVNKYSPLNTIDA--TPNPELIP 1324

Query: 1090 ---YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVI 1146
               YK   + YK   P++++KVL++S  ++  LIKML+R TRRPE+GDKFSSRHGQKGV 
Sbjct: 1325 DSAYKSSYMGYKYDNPAFIDKVLLTSGDDEQLLIKMLMRSTRRPELGDKFSSRHGQKGVC 1384

Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G+IV+QEDMPF++ GICPDIIMNPHG 
Sbjct: 1385 GIIVKQEDMPFSDLGICPDIIMNPHGF 1411



 Score =  259 bits (663), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 126/249 (50%), Positives = 172/249 (69%), Gaps = 8/249 (3%)

Query: 1124 LRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYK 1183
            LRQ +   +     ++ G+    G I+  +  P N     P+  + P         + YK
Sbjct: 1278 LRQPKYGLLDSDGIAKPGELAQKGQILVNKYSPLNTIDATPNPELIPD--------SAYK 1329

Query: 1184 EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVE 1243
               + YK   P++++KVL++S  ++  LIKML+R TRRPE+GDKFSSRHGQKGV G+IV+
Sbjct: 1330 SSYMGYKYDNPAFIDKVLLTSGDDEQLLIKMLMRSTRRPELGDKFSSRHGQKGVCGIIVK 1389

Query: 1244 QEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDV 1303
            QEDMPF++ GICPDIIMNPHG+PSRMT+GK+IELLAGKAG++ G +  GT FGG ++ ++
Sbjct: 1390 QEDMPFSDLGICPDIIMNPHGFPSRMTIGKMIELLAGKAGVLSGKFGFGTCFGGDRVENI 1449

Query: 1304 QEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLT 1363
             + LI  G++Y GKD   SG+TGE L  +I+ GP++YQKLKHMV DK+HAR+RGP V LT
Sbjct: 1450 SKVLISKGFSYGGKDYVTSGVTGEPLACFIFFGPIFYQKLKHMVMDKMHARARGPTVTLT 1509

Query: 1364 RQPTGRRWK 1372
            RQPT  R +
Sbjct: 1510 RQPTEGRAR 1518



 Score =  167 bits (423), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 80/135 (59%), Positives = 98/135 (72%), Gaps = 15/135 (11%)

Query: 688  GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
            G + FDDF+ EG IEYLDVNE NDS +A  E+ I+P  TTHLEI PFT+LG  AG     
Sbjct: 1097 GLRTFDDFIREGIIEYLDVNEENDSFLAWREAAIQPW-TTHLEIEPFTMLGCVAG----- 1150

Query: 748  YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                     L+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ  RIDTL+Y LV+ QRP+ +
Sbjct: 1151 ---------LIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLTRIDTLLYLLVHTQRPLCQ 1201

Query: 808  SKTIRITNFHKLPAG 822
            ++TI + N++KLPAG
Sbjct: 1202 TRTIDLLNWYKLPAG 1216



 Score =  152 bits (385), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 80/148 (54%), Positives = 99/148 (66%), Gaps = 5/148 (3%)

Query: 130 KPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKI-KAAQFDI 188
           K  +D  DY+ N  I+   Q  + ++ D     + K+        D+ I K  +A   D+
Sbjct: 363 KSCLDDKDYYGNKRIELSGQLISLLFEDC----FKKFQSELKKSVDQAIAKANRAENLDL 418

Query: 189 VNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKT 248
              +R DTITN  T AI +G W ++RF+MER GV+QVLSRLSYIS +GMMTRI SQFEKT
Sbjct: 419 PKLIRTDTITNGFTHAISSGQWNLKRFRMERSGVSQVLSRLSYISCMGMMTRIQSQFEKT 478

Query: 249 RKVSGPRSLQGSQWGMLCPSDTPEGEAC 276
           RKV+GPRSLQ SQWGMLCPSDTPEGEAC
Sbjct: 479 RKVAGPRSLQPSQWGMLCPSDTPEGEAC 506



 Score =  107 bits (266), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 46/87 (52%), Positives = 67/87 (77%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           KKT  ++ARD L+   + H+PV    F++K +YL++MIRR+++A  D   LDD+DYYGNK
Sbjct: 316 KKTKSEEARDILAGVVLNHVPVRRYNFRLKVIYLSLMIRRIIMASKDKSCLDDKDYYGNK 375

Query: 509 RLELAGSLLSLMFEDVFKRFNSELKET 535
           R+EL+G L+SL+FED FK+F SELK++
Sbjct: 376 RIELSGQLISLLFEDCFKKFQSELKKS 402



 Score = 78.6 bits (192), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 35/70 (50%), Positives = 56/70 (80%), Gaps = 1/70 (1%)

Query: 104 SKLKDSPE-IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLF 162
           SKL D  + + +KWKLV +F+K +GLVK HIDSF++FINVE+KK+++AN  + ++ DP +
Sbjct: 27  SKLTDDIKPVEEKWKLVPAFMKCRGLVKQHIDSFNFFINVEMKKIVKANERLTAENDPSY 86

Query: 163 YLKYLDIHVG 172
           ++++ DI+VG
Sbjct: 87  FVRFTDINVG 96



 Score = 76.6 bits (187), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 35/56 (62%), Positives = 42/56 (75%)

Query: 355 QTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
           Q TP  CRLRD+TYSAPI V+IEYTR  Q + + D+ IG +PIML+SS CVL  KT
Sbjct: 109 QLTPQRCRLRDMTYSAPIFVNIEYTRNKQIISKRDVHIGNIPIMLRSSNCVLSKKT 164



 Score = 70.5 bits (171), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 30/59 (50%), Positives = 44/59 (74%)

Query: 276  CGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            CGLVKN ALM+H+TT++ E  +L++ YN+G++ I +  GEEL+S   YLV +NG + GI
Sbjct: 970  CGLVKNFALMSHVTTDDSEGPLLRLAYNLGVQDILLVTGEELNSRNAYLVLLNGQIIGI 1028


>gi|440297940|gb|ELP90581.1| DNA-directed RNA polymerase III subunit RPC2, putative [Entamoeba
            invadens IP1]
          Length = 1140

 Score =  327 bits (837), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 151/264 (57%), Positives = 197/264 (74%), Gaps = 6/264 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G IGYNQ  RIDTL+Y L Y Q PMV +KTI + N
Sbjct: 683  GLIPYPHHNQSPRNTYQCAMGKQAIGTIGYNQFKRIDTLLYLLYYPQVPMVRTKTIDMIN 742

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F K+PAG+NA +AVMSYSGYDIEDA I+NKAS+DRG+ RC VYR +  V+K+Y N   DR
Sbjct: 743  FDKVPAGENAMVAVMSYSGYDIEDASILNKASIDRGYQRCFVYRKADVVIKKYRNGMSDR 802

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATP---E 1089
            ++ P    D  + + +++ LD DG+ +PG ++    + +NK  P  +   I+   P   +
Sbjct: 803  VVCP---TDEERAMKKYKVLDFDGVCSPGTKLMPGMIYLNKQAPNNTTRPITTDVPTDED 859

Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
            ++   ++YKGSVPSY++KVL++S+ E+   IK+ LR +RRPE+GDKFSSRHGQKGV GLI
Sbjct: 860  FRREALTYKGSVPSYVDKVLITSSDEEPLKIKIGLRTSRRPELGDKFSSRHGQKGVTGLI 919

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
            V+QEDMPF   GICPD+IMNPHG 
Sbjct: 920  VKQEDMPFTGDGICPDVIMNPHGF 943



 Score =  277 bits (708), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 126/190 (66%), Positives = 159/190 (83%)

Query: 1181 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1240
            +++   ++YKGSVPSY++KVL++S+ E+   IK+ LR +RRPE+GDKFSSRHGQKGV GL
Sbjct: 859  DFRREALTYKGSVPSYVDKVLITSSDEEPLKIKIGLRTSRRPELGDKFSSRHGQKGVTGL 918

Query: 1241 IVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKL 1300
            IV+QEDMPF   GICPD+IMNPHG+PSRMTVGK++EL++GKAGLM+G +K GTAFGG KL
Sbjct: 919  IVKQEDMPFTGDGICPDVIMNPHGFPSRMTVGKMLELVSGKAGLMDGTFKYGTAFGGDKL 978

Query: 1301 VDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRV 1360
             D+ + LI  GY+Y GK++ YSGITG+ L AYI+ GPVYYQKLKHMV DK+HAR+RGP+ 
Sbjct: 979  DDMSKILIESGYSYDGKEVLYSGITGKTLRAYIFIGPVYYQKLKHMVLDKMHARARGPKS 1038

Query: 1361 VLTRQPTGRR 1370
             LTRQPT  R
Sbjct: 1039 SLTRQPTEGR 1048



 Score =  216 bits (550), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 102/203 (50%), Positives = 143/203 (70%), Gaps = 3/203 (1%)

Query: 132 HIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVNH 191
            +D  DY+ N  ++   Q  + ++ D   LF     ++      ++  K ++  FDI+ H
Sbjct: 362 ELDDKDYYGNKRMELAGQMMSLLFED---LFKQFNTELQTIATKELSKKTRSESFDILKH 418

Query: 192 MRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKV 251
           +    IT  L  A+ TGNW ++RF M+R GVTQVLSRLSYIS LGMMTR+NS FEKTRKV
Sbjct: 419 ISPHRITTGLIHALSTGNWVLKRFNMDRAGVTQVLSRLSYISALGMMTRLNSHFEKTRKV 478

Query: 252 SGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAM 311
           SGPRSLQGSQWGM+CPSDTPEGE+CGLVKN +L+T +TT++D++ ++ +++N+G+E   +
Sbjct: 479 SGPRSLQGSQWGMVCPSDTPEGESCGLVKNFSLLTEVTTDSDDQAIMTMLFNLGVEDANL 538

Query: 312 FNGEELSSPGVYLVFVNGILAGI 334
            +G+EL+S   YLVF+NG L GI
Sbjct: 539 ISGDELNSENSYLVFLNGQLLGI 561



 Score =  157 bits (398), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 79/136 (58%), Positives = 96/136 (70%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           GFK  +D + +G IEYLDVNE N+S+IA+ E+ I    TTHLEI P ++LGV AG     
Sbjct: 630 GFKTIEDCIKDGMIEYLDVNEENNSYIAIYENQINEH-TTHLEIDPLSILGVVAG----- 683

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQA+G IGYNQ  RIDTL+Y L Y Q PMV 
Sbjct: 684 ---------LIPYPHHNQSPRNTYQCAMGKQAIGTIGYNQFKRIDTLLYLLYYPQVPMVR 734

Query: 808 SKTIRITNFHKLPAGK 823
           +KTI + NF K+PAG+
Sbjct: 735 TKTIDMINFDKVPAGE 750



 Score = 92.4 bits (228), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 42/85 (49%), Positives = 63/85 (74%), Gaps = 1/85 (1%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           K+  VD+ARD L++  + HI V+   FK K +Y+A+M+   +L   +   LDD+DYYGNK
Sbjct: 314 KRPKVDEARDVLANLILPHIEVLRYNFKTKIIYIALMVS-WILKADETGELDDKDYYGNK 372

Query: 509 RLELAGSLLSLMFEDVFKRFNSELK 533
           R+ELAG ++SL+FED+FK+FN+EL+
Sbjct: 373 RMELAGQMMSLLFEDLFKQFNTELQ 397



 Score = 76.3 bits (186), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 46/58 (79%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           DKW+L+ +F+K +GLV+ HIDSF+YFI+ EI+++++AN  +  D D  FYLKYLD+ V
Sbjct: 40  DKWRLIPAFVKSRGLVRQHIDSFNYFIDEEIRQIVRANDKVTCDADSKFYLKYLDVWV 97



 Score = 72.4 bits (176), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/71 (54%), Positives = 49/71 (69%), Gaps = 4/71 (5%)

Query: 341 VCKPEIEESFNYTRQ-TTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIML 399
           V +P +EE  NY ++  TP ECRLRDL+Y+API   IE+TR  ++V R  + IG MPIML
Sbjct: 97  VHQPCVEE--NYKKEPITPMECRLRDLSYTAPIQASIEFTR-DKKVYRKTVTIGYMPIML 153

Query: 400 QSSKCVLRNKT 410
           QS  CVL N T
Sbjct: 154 QSKHCVLYNNT 164


>gi|322710723|gb|EFZ02297.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Metarhizium
            anisopliae ARSEF 23]
          Length = 1157

 Score =  327 bits (837), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 152/267 (56%), Positives = 202/267 (75%), Gaps = 7/267 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+P+PHHNQ+PRNTYQCAMGKQA+G I YNQ NRIDTL+Y LVY QRPMV +KTI++ +
Sbjct: 688  GLIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLYTLVYPQRPMVITKTIQLVH 747

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+ VMSYSGYDIEDAL++NKAS+DRGFGRC V+R     L++YPN   +R
Sbjct: 748  YDKLPAGQNATVVVMSYSGYDIEDALVLNKASIDRGFGRCQVFRKYTTELQKYPNGRRER 807

Query: 1033 ILGPLLEAD---TRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMP---TISVSAISMA 1086
            I  P+ + +   TR+ V ++ ALD DG+   G ++   +V+V K  P   T +   +   
Sbjct: 808  IGDPVNQVNGGTTRREV-KYEALDDDGLATVGYRVKSGEVMVKKETPLDLTTTGIGLDRG 866

Query: 1087 TPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVI 1146
              EY++  +SY+   P+Y++KV++S   +D  +IK+  RQTRRPE+GDKFSSRHGQKGV+
Sbjct: 867  PSEYRDSAISYRIPDPAYIDKVMISQTEKDTTVIKVQTRQTRRPELGDKFSSRHGQKGVV 926

Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G+IV+QEDMPF ++G+CPDIIMNPHG 
Sbjct: 927  GIIVDQEDMPFADNGLCPDIIMNPHGF 953



 Score =  259 bits (663), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 118/199 (59%), Positives = 161/199 (80%), Gaps = 3/199 (1%)

Query: 1175 GCDR-ITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
            G DR  +EY++  +SY+   P+Y++KV++S   +D  +IK+  RQTRRPE+GDKFSSRHG
Sbjct: 862  GLDRGPSEYRDSAISYRIPDPAYIDKVMISQTEKDTTVIKVQTRQTRRPELGDKFSSRHG 921

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEG--NYKE 1291
            QKGV+G+IV+QEDMPF ++G+CPDIIMNPHG+PSRMTVGKL+E L GKA +++G  +Y  
Sbjct: 922  QKGVVGIIVDQEDMPFADNGLCPDIIMNPHGFPSRMTVGKLLECLTGKASIIDGRPDYGF 981

Query: 1292 GTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKI 1351
            G AF    + D+ + L+ +G++++GKD F SG+TGE LEAYI++GP+YYQ+LKHMVQDK+
Sbjct: 982  GDAFRSHPVKDMSQVLLDYGFSWEGKDYFTSGLTGEPLEAYIFNGPIYYQRLKHMVQDKM 1041

Query: 1352 HARSRGPRVVLTRQPTGRR 1370
            H+RSRGPR +LTRQPT  R
Sbjct: 1042 HSRSRGPRAILTRQPTEGR 1060



 Score =  188 bits (477), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 94/154 (61%), Positives = 114/154 (74%), Gaps = 4/154 (2%)

Query: 188 IVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEK 247
           I NH   + I   +  AIQTGNW+++RF M R GVT VLSRLSYIS LGMMTRI+SQFEK
Sbjct: 420 ISNH--ANNIGMGINRAIQTGNWSVKRFNMNRAGVTHVLSRLSYISALGMMTRISSQFEK 477

Query: 248 TRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNI--G 305
           TRKVSGPR+LQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT  DE  + + ++ +  G
Sbjct: 478 TRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTNVDEAPVKRWIFTLDTG 537

Query: 306 IEHIAMFNGEELSSPGVYLVFVNGILAGITCHHK 339
           +E I  F+G E+   G +++ VNG    +T + K
Sbjct: 538 VEPIRNFSGAEMHREGSWVIHVNGTPFALTRYPK 571



 Score =  161 bits (408), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 81/137 (59%), Positives = 97/137 (70%), Gaps = 15/137 (10%)

Query: 687 LGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELL 746
           LG   FDDFL +G +EYLDVNE  D+ I + E+ I    TTHLEI PFTLLG  AG    
Sbjct: 634 LGKVTFDDFLTKGIVEYLDVNEEQDALITLYENQITQS-TTHLEIEPFTLLGAVAG---- 688

Query: 747 QYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMV 806
                     L+P+PHHNQ+PRNTYQCAMGKQA+G I YNQ NRIDTL+Y LVY QRPMV
Sbjct: 689 ----------LIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLYTLVYPQRPMV 738

Query: 807 ESKTIRITNFHKLPAGK 823
            +KTI++ ++ KLPAG+
Sbjct: 739 ITKTIQLVHYDKLPAGQ 755



 Score = 95.9 bits (237), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 43/85 (50%), Positives = 64/85 (75%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           ++  V++  D L++  IAH+P+  + F  KA+Y+A+M RR+++A  D  ++DDRD+ GNK
Sbjct: 314 RRNNVEEGLDALANLIIAHVPIEGLDFYPKAIYVAMMTRRVLMASQDSKLVDDRDFVGNK 373

Query: 509 RLELAGSLLSLMFEDVFKRFNSELK 533
           RLELAG LLSL+FED+FKRF  E+K
Sbjct: 374 RLELAGQLLSLLFEDLFKRFMGEVK 398



 Score = 76.3 bits (186), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 31/52 (59%), Positives = 42/52 (80%)

Query: 355 QTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVL 406
           + TP ECRLRD+TY+API VDI Y R  QR++R ++ +GRMP+ML+SS+C L
Sbjct: 103 EVTPMECRLRDMTYAAPIVVDIAYIRDKQRIIRRNVPLGRMPVMLKSSRCRL 154



 Score = 69.7 bits (169), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/68 (51%), Positives = 49/68 (72%), Gaps = 1/68 (1%)

Query: 105 KLKDSPEIRD-KWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFY 163
           KL D    RD K++L+ +FLK KGLVK HIDS+++F+  EIK +++AN  I SDVD  F+
Sbjct: 20  KLTDPVNTRDDKFQLLPAFLKVKGLVKQHIDSYNFFVEQEIKDIVRANRTIRSDVDSNFW 79

Query: 164 LKYLDIHV 171
           L++ DI V
Sbjct: 80  LEFTDIRV 87


>gi|212537851|ref|XP_002149081.1| DNA-directed RNA polymerase III, beta subunit, putative [Talaromyces
            marneffei ATCC 18224]
 gi|210068823|gb|EEA22914.1| DNA-directed RNA polymerase III, beta subunit, putative [Talaromyces
            marneffei ATCC 18224]
          Length = 1212

 Score =  326 bits (836), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 151/266 (56%), Positives = 196/266 (73%), Gaps = 6/266 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I  NQ  RID+L+Y +VY Q+PMV+++TI +  
Sbjct: 744  GLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSLLYLMVYPQKPMVKTRTIELIK 803

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + +LPAGQNAT+AVMSYSGYDIEDAL++NK S+DRGFGRC V+R     LK YPN + DR
Sbjct: 804  YDQLPAGQNATVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYVANLKSYPNGSEDR 863

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT----- 1087
            + GP L+ +   P+ +H  LD DG+ A G  + + QV +NK +P  + SA    +     
Sbjct: 864  LRGPELDEEG-APITKHALLDTDGLAAVGAVVSQGQVYINKEVPAAAFSAGITGSDVGRP 922

Query: 1088 PEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
            P+Y   P++YK   PSY++KV+VS    ++ + K+  RQTRRPE+GDKFSSRHGQKGV+G
Sbjct: 923  PDYNPAPMTYKLPDPSYIDKVMVSVTEGESKIYKVQTRQTRRPEVGDKFSSRHGQKGVVG 982

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            +I EQ DMPFN+ GI PDIIMNPHG 
Sbjct: 983  IIAEQADMPFNDQGIVPDIIMNPHGF 1008



 Score =  256 bits (655), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 120/203 (59%), Positives = 153/203 (75%), Gaps = 2/203 (0%)

Query: 1172 GLKGCD--RITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFS 1229
            G+ G D  R  +Y   P++YK   PSY++KV+VS    ++ + K+  RQTRRPE+GDKFS
Sbjct: 913  GITGSDVGRPPDYNPAPMTYKLPDPSYIDKVMVSVTEGESKIYKVQTRQTRRPEVGDKFS 972

Query: 1230 SRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNY 1289
            SRHGQKGV+G+I EQ DMPFN+ GI PDIIMNPHG+PSRMTVGKL+EL+AGKAG++ G +
Sbjct: 973  SRHGQKGVVGIIAEQADMPFNDQGIVPDIIMNPHGFPSRMTVGKLLELVAGKAGVLSGQH 1032

Query: 1290 KEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQD 1349
              GTAFGG+ +  +   L+  G++Y GKD   SGITGE L  Y++ GP+YYQKLKHMVQD
Sbjct: 1033 GYGTAFGGSPVEQMSAILVDKGFSYGGKDYLTSGITGEPLPFYVFMGPIYYQKLKHMVQD 1092

Query: 1350 KIHARSRGPRVVLTRQPTGRRWK 1372
            K+H+RS GPR  LTRQPT  R +
Sbjct: 1093 KMHSRSTGPRATLTRQPTEGRSR 1115



 Score =  198 bits (503), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 104/205 (50%), Positives = 141/205 (68%), Gaps = 6/205 (2%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVN-- 190
           +D  DY  N  ++   Q  A ++ D   LF     DI + I  K++ K +   FD ++  
Sbjct: 423 VDDRDYVGNKRLELAGQLLALLFED---LFKKFQFDIKMNIT-KVLGKRRREIFDAMSVV 478

Query: 191 HMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRK 250
            +  + IT+ +  AI TGNW+++RF+MER GVT VLSRLSYI+ LGMMTRI+SQFEKTRK
Sbjct: 479 TLHGNHITHGMNRAISTGNWSLKRFRMERAGVTHVLSRLSYIAALGMMTRISSQFEKTRK 538

Query: 251 VSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIA 310
           VSGPR+LQ SQ+GMLCPSDTPEGEACGLVKNLALMTHITT ++E  + K+++ +G E I 
Sbjct: 539 VSGPRALQPSQFGMLCPSDTPEGEACGLVKNLALMTHITTNDEEGPVSKLVFMLGAEDIT 598

Query: 311 MFNGEELSSPGVYLVFVNGILAGIT 335
             +G+E+   G Y++ +NG    +T
Sbjct: 599 TLSGKEIYGLGAYIISMNGTPIALT 623



 Score =  157 bits (397), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 75/136 (55%), Positives = 97/136 (71%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G  +FDDFL +G +EYLDVNE NDS+IA+ E  +   +TTHLEI PFT+LG  AG     
Sbjct: 691 GSMQFDDFLAQGLVEYLDVNEENDSNIAIYEKDV-IDITTHLEIEPFTILGAVAG----- 744

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQA+G I  NQ  RID+L+Y +VY Q+PMV+
Sbjct: 745 ---------LIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSLLYLMVYPQKPMVK 795

Query: 808 SKTIRITNFHKLPAGK 823
           ++TI +  + +LPAG+
Sbjct: 796 TRTIELIKYDQLPAGQ 811



 Score =  105 bits (263), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 48/95 (50%), Positives = 72/95 (75%)

Query: 439 KLRQKRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDM 498
           K+ + +   YKKT +++A + +SS  I+H+ V +M F+ KA+Y+A M RR+++A  D DM
Sbjct: 363 KINRGKIGGYKKTHIEEAIEAISSVIISHVEVTDMDFRPKAIYVANMARRVLMAKHDSDM 422

Query: 499 LDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
           +DDRDY GNKRLELAG LL+L+FED+FK+F  ++K
Sbjct: 423 VDDRDYVGNKRLELAGQLLALLFEDLFKKFQFDIK 457



 Score = 85.1 bits (209), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 50/60 (83%)

Query: 113 RDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           RDKW L+ +FLK KGLVK HIDS++YFI V++KK+++A++ IYSD D  F+LK+ DI+VG
Sbjct: 89  RDKWNLLPAFLKVKGLVKQHIDSYNYFIEVQLKKIVEASSTIYSDADSAFFLKFTDIYVG 148



 Score = 80.1 bits (196), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 37/65 (56%), Positives = 46/65 (70%)

Query: 345 EIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKC 404
           E ++S       TP+ECRLRD+TY+API VD  Y RG  +V +  + IGRMPIML+SSKC
Sbjct: 155 EPKDSVESDSTVTPNECRLRDMTYAAPIFVDFTYKRGKDKVTQRRVPIGRMPIMLRSSKC 214

Query: 405 VLRNK 409
           VL NK
Sbjct: 215 VLSNK 219


>gi|294660111|ref|XP_002777730.1| DEHA2G23232p [Debaryomyces hansenii CBS767]
 gi|199434470|emb|CAR66041.1| DEHA2G23232p [Debaryomyces hansenii CBS767]
          Length = 1165

 Score =  325 bits (834), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 153/271 (56%), Positives = 200/271 (73%), Gaps = 11/271 (4%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G IGYNQ  RIDTL+Y +VY Q+PMV++KTI + +
Sbjct: 698  GLIPYPHHNQSPRNTYQCAMGKQAIGVIGYNQFRRIDTLLYLMVYPQQPMVKTKTIELID 757

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNA +AVMSYSGYDIEDAL++NK+S+DRGFGRC V R +   LK+YPN T D 
Sbjct: 758  YDKLPAGQNAVVAVMSYSGYDIEDALVLNKSSIDRGFGRCQVLRKNTITLKRYPNHTKDL 817

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAI--------- 1083
            + G  ++ +  +P++ H AL  DG+   G ++   QV VNK +P  +  ++         
Sbjct: 818  VSGMRVD-ENGEPIFPHAALGPDGLGEVGMKVENGQVYVNKCVPNNAGESVLGSNDQQHN 876

Query: 1084 -SMATPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQ 1142
                   ++EVP  YK   P+Y+++V++S +  D  LIK+LLRQTRRPE+GDKFSSRHGQ
Sbjct: 877  QQQTAESHREVPAFYKAPEPAYVDQVMMSVSDNDQALIKVLLRQTRRPELGDKFSSRHGQ 936

Query: 1143 KGVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            KGV G+IV+QED+PFN+ GI PDIIMNPHG 
Sbjct: 937  KGVCGIIVQQEDLPFNDDGISPDIIMNPHGF 967



 Score =  275 bits (703), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 123/191 (64%), Positives = 159/191 (83%)

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
            ++EVP  YK   P+Y+++V++S +  D  LIK+LLRQTRRPE+GDKFSSRHGQKGV G+I
Sbjct: 884  HREVPAFYKAPEPAYVDQVMMSVSDNDQALIKVLLRQTRRPELGDKFSSRHGQKGVCGII 943

Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
            V+QED+PFN+ GI PDIIMNPHG+PSRMTVGK+IEL++GKAG++ G+ + GT FGG+KL 
Sbjct: 944  VQQEDLPFNDDGISPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGSLEYGTCFGGSKLE 1003

Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
            ++   L+  G++Y GKD+ YSGITGE L+AYI+ GP+YYQKLKHMV DK+HAR+RGPR V
Sbjct: 1004 EMSRTLVDKGFSYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAV 1063

Query: 1362 LTRQPTGRRWK 1372
            LTRQPT  R +
Sbjct: 1064 LTRQPTEGRSR 1074



 Score =  191 bits (484), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 132/337 (39%), Positives = 185/337 (54%), Gaps = 29/337 (8%)

Query: 20  LKHHPIGTPGPAYIFFLLEGLQA---ILFLPLFKQVDFGDSKVVSLREL----------- 65
           LKH+ I    P  I     G+ +   IL L   +   + D  VV+  E            
Sbjct: 244 LKHNSISEDIPIVIILKAAGITSDLEILQLVCGQDPQYQDLFVVNFEEAAKLEIFTQQQA 303

Query: 66  LSHVTYQKRLYRLTVQPNWLGTVKAVHGTYLTMVTDETSKLKDSPEIRDKWKLVLSFLKE 125
           L++V  + +  R    P      + +     T++   T       + R+K  L ++ +  
Sbjct: 304 LNYVGKRVKTIRRAGAPKLSQMQEGIEAIATTIIAHLTVS---DLQFREK-ALYIAAMAR 359

Query: 126 KGLVKPH----IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPK- 180
           + L+  H    +D  DY  N  ++   Q  + ++ D   LF     D    I DKI+ K 
Sbjct: 360 RVLMTMHNPKMVDDRDYVGNKRLELAGQLMSLLFED---LFKKFNSDFKANI-DKILKKP 415

Query: 181 IKAAQFD--IVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMM 238
            +A++FD  +  ++  + IT  L  AI TGNW+++RFKMER GVT VLSRLSYIS LGMM
Sbjct: 416 SRASEFDALLSINIHSNNITMGLNRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMM 475

Query: 239 TRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNML 298
           TRI+SQFEK+RKVSGPR+LQ SQ+GMLC +DTPEGEACGLVKNLALMTHIT++++E  + 
Sbjct: 476 TRISSQFEKSRKVSGPRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITSDDEELPIK 535

Query: 299 KIMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAGIT 335
           K+ Y +G E I   +   L + G + V VNG L G T
Sbjct: 536 KLCYVLGCEDILGIDSATLYADGNFGVCVNGTLIGCT 572



 Score =  156 bits (395), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 77/135 (57%), Positives = 95/135 (70%), Gaps = 17/135 (12%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRP---GVTTHLEIAPFTLLGVCAGIELLQY 748
           FDDFL +G +EYLDVNE NDS IA+ E  +        TH+EI PFT+LG  AG      
Sbjct: 645 FDDFLKDGLVEYLDVNEENDSLIALYEHDLVEHSYQTFTHMEIEPFTVLGAVAG------ 698

Query: 749 NKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVES 808
                   L+PYPHHNQ+PRNTYQCAMGKQA+G IGYNQ  RIDTL+Y +VY Q+PMV++
Sbjct: 699 --------LIPYPHHNQSPRNTYQCAMGKQAIGVIGYNQFRRIDTLLYLMVYPQQPMVKT 750

Query: 809 KTIRITNFHKLPAGK 823
           KTI + ++ KLPAG+
Sbjct: 751 KTIELIDYDKLPAGQ 765



 Score = 99.8 bits (247), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 43/91 (47%), Positives = 69/91 (75%)

Query: 443 KRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDR 502
           +R    K + + +  + +++T IAH+ V +++F+ KA+Y+A M RR+++ + +P M+DDR
Sbjct: 315 RRAGAPKLSQMQEGIEAIATTIIAHLTVSDLQFREKALYIAAMARRVLMTMHNPKMVDDR 374

Query: 503 DYYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
           DY GNKRLELAG L+SL+FED+FK+FNS+ K
Sbjct: 375 DYVGNKRLELAGQLMSLLFEDLFKKFNSDFK 405



 Score = 87.0 bits (214), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 37/59 (62%), Positives = 50/59 (84%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           DKW L+ +FLK KGLVK H+DSF+YF++V++KK+++AN  + SDVDP FYLKYLDI +G
Sbjct: 43  DKWNLLPAFLKVKGLVKQHLDSFNYFVDVDLKKIIKANELVLSDVDPEFYLKYLDIRIG 101



 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/146 (39%), Positives = 75/146 (51%), Gaps = 29/146 (19%)

Query: 280 KNLALMTHITTENDEKNMLKIMYNI-GI--EHIAMFN------------GEELS----SP 320
           K   L   I T +D+ N+L     + G+  +H+  FN              EL      P
Sbjct: 30  KGKGLTDQINTADDKWNLLPAFLKVKGLVKQHLDSFNYFVDVDLKKIIKANELVLSDVDP 89

Query: 321 GVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTR 380
             YL +++     I   HK    P  +E         PHECRLRDLTYSAPI VD+EYTR
Sbjct: 90  EFYLKYLD-----IRIGHKSTSPPGTKEVI-----LPPHECRLRDLTYSAPIYVDVEYTR 139

Query: 381 GSQRVVRSDLVIGRMPIMLQSSKCVL 406
           G + ++  DL IGRMPIML+S+KC+L
Sbjct: 140 GRKIIMHKDLEIGRMPIMLRSNKCIL 165


>gi|322696543|gb|EFY88334.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Metarhizium
            acridum CQMa 102]
          Length = 1157

 Score =  325 bits (833), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 150/266 (56%), Positives = 199/266 (74%), Gaps = 5/266 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+P+PHHNQ+PRNTYQCAMGKQA+G I YNQ NRIDTL+Y LVY QRPMV +KTI++ +
Sbjct: 688  GLIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLYTLVYPQRPMVITKTIQLVH 747

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+ VMSYSGYDIEDAL++NKAS+DRGFGRC V+R     L++YPN   +R
Sbjct: 748  YDKLPAGQNATVVVMSYSGYDIEDALVLNKASIDRGFGRCQVFRKYTTELQKYPNGRRER 807

Query: 1033 ILGPL--LEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMP---TISVSAISMAT 1087
            I  P+  +   T +   ++ ALD DG+   G ++   +V+V K  P   T +   +    
Sbjct: 808  IGDPVNQVNGGTTRREEKYEALDDDGLATVGYRVKSGEVMVKKETPLDLTTTGIGLDRGP 867

Query: 1088 PEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
             EY++  +SY+   P+Y++KV++S   +D  +IK+  RQTRRPE+GDKFSSRHGQKGV+G
Sbjct: 868  SEYRDSAISYRIPDPAYIDKVMISQTEKDTTVIKVQTRQTRRPELGDKFSSRHGQKGVVG 927

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            +IV+QEDMPF ++G+CPDIIMNPHG 
Sbjct: 928  IIVDQEDMPFADNGLCPDIIMNPHGF 953



 Score =  259 bits (663), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 118/199 (59%), Positives = 161/199 (80%), Gaps = 3/199 (1%)

Query: 1175 GCDR-ITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
            G DR  +EY++  +SY+   P+Y++KV++S   +D  +IK+  RQTRRPE+GDKFSSRHG
Sbjct: 862  GLDRGPSEYRDSAISYRIPDPAYIDKVMISQTEKDTTVIKVQTRQTRRPELGDKFSSRHG 921

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEG--NYKE 1291
            QKGV+G+IV+QEDMPF ++G+CPDIIMNPHG+PSRMTVGKL+E L GKA +++G  +Y  
Sbjct: 922  QKGVVGIIVDQEDMPFADNGLCPDIIMNPHGFPSRMTVGKLLECLTGKASIIDGRPDYGF 981

Query: 1292 GTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKI 1351
            G AF    + D+ + L+ +G++++GKD F SG+TGE LEAYI++GP+YYQ+LKHMVQDK+
Sbjct: 982  GDAFRSHPVKDMSQVLLDYGFSWEGKDYFTSGLTGEPLEAYIFNGPIYYQRLKHMVQDKM 1041

Query: 1352 HARSRGPRVVLTRQPTGRR 1370
            H+RSRGPR +LTRQPT  R
Sbjct: 1042 HSRSRGPRAILTRQPTEGR 1060



 Score =  188 bits (477), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 94/154 (61%), Positives = 114/154 (74%), Gaps = 4/154 (2%)

Query: 188 IVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEK 247
           I NH   + I   +  AIQTGNW+++RF M R GVT VLSRLSYIS LGMMTRI+SQFEK
Sbjct: 420 ISNH--ANNIGMGINRAIQTGNWSVKRFNMNRAGVTHVLSRLSYISALGMMTRISSQFEK 477

Query: 248 TRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNI--G 305
           TRKVSGPR+LQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT  DE  + + ++ +  G
Sbjct: 478 TRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTNVDEAPVKRWIFTLDTG 537

Query: 306 IEHIAMFNGEELSSPGVYLVFVNGILAGITCHHK 339
           +E I  F+G E+   G +++ VNG    +T + K
Sbjct: 538 VEPIRNFSGAEMHREGSWVIHVNGTPFALTRYPK 571



 Score =  161 bits (408), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 80/137 (58%), Positives = 96/137 (70%), Gaps = 15/137 (10%)

Query: 687 LGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELL 746
           LG   FDDFL  G +EYLDVNE  D+ + + E+ I    TTHLEI PFTLLG  AG    
Sbjct: 634 LGKVTFDDFLTRGIVEYLDVNEEQDALVTIYENQITQS-TTHLEIEPFTLLGAVAG---- 688

Query: 747 QYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMV 806
                     L+P+PHHNQ+PRNTYQCAMGKQA+G I YNQ NRIDTL+Y LVY QRPMV
Sbjct: 689 ----------LIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLYTLVYPQRPMV 738

Query: 807 ESKTIRITNFHKLPAGK 823
            +KTI++ ++ KLPAG+
Sbjct: 739 ITKTIQLVHYDKLPAGQ 755



 Score = 95.9 bits (237), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 43/85 (50%), Positives = 64/85 (75%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           ++  V++  D L++  IAH+P+  + F  KA+Y+A+M RR+++A  D  ++DDRD+ GNK
Sbjct: 314 RRNNVEEGLDALANLIIAHVPIEGLDFYPKAIYVAMMTRRVLMASQDSKLVDDRDFVGNK 373

Query: 509 RLELAGSLLSLMFEDVFKRFNSELK 533
           RLELAG LLSL+FED+FKRF  E+K
Sbjct: 374 RLELAGQLLSLLFEDLFKRFMGEVK 398



 Score = 76.3 bits (186), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 31/52 (59%), Positives = 42/52 (80%)

Query: 355 QTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVL 406
           + TP ECRLRD+TY+API VDI Y R  QR++R ++ +GRMP+ML+SS+C L
Sbjct: 103 EVTPMECRLRDMTYAAPIVVDIAYIRDKQRIIRRNVPLGRMPVMLKSSRCRL 154



 Score = 69.7 bits (169), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/68 (51%), Positives = 49/68 (72%), Gaps = 1/68 (1%)

Query: 105 KLKDSPEIRD-KWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFY 163
           KL D    RD K++L+ +FLK KGLVK HIDS+++F+  EIK +++AN  I SDVD  F+
Sbjct: 20  KLTDPVNTRDDKFQLLPAFLKVKGLVKQHIDSYNFFVEQEIKDIVRANRTIRSDVDSNFW 79

Query: 164 LKYLDIHV 171
           L++ DI V
Sbjct: 80  LEFTDIRV 87


>gi|346323848|gb|EGX93446.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Cordyceps
            militaris CM01]
          Length = 1164

 Score =  325 bits (832), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 149/266 (56%), Positives = 199/266 (74%), Gaps = 5/266 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+P+PHHNQ+PRNTYQCAMGKQA+G I YNQ NRIDTL+Y LVY QRPMV SKTI++ N
Sbjct: 695  GLIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLYTLVYPQRPMVISKTIQLVN 754

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+ VMSYSGYDIEDAL++NKAS+DRGFGRC V+R     L++YPN   +R
Sbjct: 755  YDKLPAGQNATVVVMSYSGYDIEDALVLNKASIDRGFGRCQVFRKYTTELQKYPNGRRER 814

Query: 1033 ILGPLLE--ADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMP---TISVSAISMAT 1087
            I  P+ E   D R+   +H+ALD DG+   G ++   Q ++ K  P   T +   +   +
Sbjct: 815  IGDPVNEGDGDQRRRSEKHKALDDDGLAMVGCRVFSGQSMIKKETPLDMTTTGIGLDRGS 874

Query: 1088 PEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
             ++++  V+Y+   P+Y++KV++S   +D  ++K+  RQTRRPE+GDKFSSRHGQKGV+G
Sbjct: 875  SDFRDSAVNYRIPDPAYIDKVMISHTEKDTTVVKVQTRQTRRPELGDKFSSRHGQKGVVG 934

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            +IV+ EDMPF ++G+ PDIIMNPHG 
Sbjct: 935  IIVDHEDMPFADNGLTPDIIMNPHGF 960



 Score =  249 bits (635), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 112/201 (55%), Positives = 159/201 (79%), Gaps = 3/201 (1%)

Query: 1175 GCDR-ITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
            G DR  +++++  V+Y+   P+Y++KV++S   +D  ++K+  RQTRRPE+GDKFSSRHG
Sbjct: 869  GLDRGSSDFRDSAVNYRIPDPAYIDKVMISHTEKDTTVVKVQTRQTRRPELGDKFSSRHG 928

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEG--NYKE 1291
            QKGV+G+IV+ EDMPF ++G+ PDIIMNPHG+PSRMTVGKL+E L GKA ++ G  +Y  
Sbjct: 929  QKGVVGIIVDHEDMPFADNGLTPDIIMNPHGFPSRMTVGKLLECLTGKASIIHGRPDYGF 988

Query: 1292 GTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKI 1351
            G AF    + ++ + L+ HG++++GKD F SG+TGE LEAYI++GP+YYQ+LKHMVQDK+
Sbjct: 989  GDAFRSHPVEEMSQVLLDHGFSWEGKDYFTSGLTGEPLEAYIFNGPIYYQRLKHMVQDKM 1048

Query: 1352 HARSRGPRVVLTRQPTGRRWK 1372
            H+R+RGPR +LTRQPT  R +
Sbjct: 1049 HSRARGPRAILTRQPTEGRSR 1069



 Score =  196 bits (497), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 106/215 (49%), Positives = 142/215 (66%), Gaps = 9/215 (4%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKI-KAAQFDIVNH 191
           +D  D+  N  ++   Q  + ++ D   LF    +++ + I DK + K  +A   D VN 
Sbjct: 371 VDDRDFVGNKRLELAGQLLSLLFED---LFKRFTVEVKMSI-DKFLKKNNRAVPLDAVNM 426

Query: 192 MRQ--DTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
           +    + I   +  AIQTGNW+++RF M R GVT VLSRLSYI+ LGMMTRI+SQFEKTR
Sbjct: 427 ISNHANNIGMGINRAIQTGNWSVKRFNMNRAGVTHVLSRLSYIAALGMMTRISSQFEKTR 486

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMY--NIGIE 307
           KVSGPR+LQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT  DE  + + ++  ++G+E
Sbjct: 487 KVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTNVDEDPVKRWVFTLDVGVE 546

Query: 308 HIAMFNGEELSSPGVYLVFVNGILAGITCHHKEVC 342
            I  F+G E+   G Y++ +NG    +T + K  C
Sbjct: 547 PIRNFSGAEMHREGSYIIHINGTPFALTRYPKRFC 581



 Score =  165 bits (417), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 84/147 (57%), Positives = 100/147 (68%), Gaps = 16/147 (10%)

Query: 677 RPTFLNMHQFLGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTL 736
           +P  L + Q LG   FDDFL  G +EYLDVNE  D+ + + E  I    TTHLEI PFT+
Sbjct: 632 KPEHLRLLQ-LGSVTFDDFLRNGVVEYLDVNEEQDALVTIYEDKITMS-TTHLEIEPFTI 689

Query: 737 LGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMY 796
           LG  AG              L+P+PHHNQ+PRNTYQCAMGKQA+G I YNQ NRIDTL+Y
Sbjct: 690 LGAVAG--------------LIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLY 735

Query: 797 NLVYAQRPMVESKTIRITNFHKLPAGK 823
            LVY QRPMV SKTI++ N+ KLPAG+
Sbjct: 736 TLVYPQRPMVISKTIQLVNYDKLPAGQ 762



 Score = 97.4 bits (241), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 51/130 (39%), Positives = 81/130 (62%), Gaps = 3/130 (2%)

Query: 407 RNKTEYTSSSRRASTSSVTMHSQRTSPLLSCKKLRQKRFQ---TYKKTPVDDARDFLSST 463
           R + E+  +   A+ + V    Q    + S  K+  +R Q     ++  V++  D L++ 
Sbjct: 276 RYQDEFLINFDEATKAGVFTQHQALEYIGSRVKMGSRRGQFGPQVRRNNVEEGLDALANL 335

Query: 464 CIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGSLLSLMFED 523
            IAH+P+  + F  KA+Y+A+M R++++A  D  ++DDRD+ GNKRLELAG LLSL+FED
Sbjct: 336 IIAHVPIEGLDFYPKAIYVAMMTRKVLMAAQDSKLVDDRDFVGNKRLELAGQLLSLLFED 395

Query: 524 VFKRFNSELK 533
           +FKRF  E+K
Sbjct: 396 LFKRFTVEVK 405



 Score = 74.3 bits (181), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 31/51 (60%), Positives = 41/51 (80%)

Query: 356 TTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVL 406
            TP ECRLRD+TY+API VDI Y R  Q+++R ++ +GRMP+ML+SSKC L
Sbjct: 111 VTPMECRLRDMTYAAPILVDIVYIRDKQKIIRRNVSLGRMPVMLRSSKCRL 161



 Score = 48.9 bits (115), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 42/65 (64%), Gaps = 7/65 (10%)

Query: 114 DKWKLVLSFLKEKGLVKP--HIDSFDYFINVEIKKLMQANANIYSDVDPLFYL-----KY 166
           DK++L+ +FLK K  +    HIDS+++F+  EIK +++AN  I SDVD  F+L     ++
Sbjct: 30  DKFQLLPAFLKVKVRLTADMHIDSYNFFVEQEIKDIVRANRTIRSDVDSNFWLECRLRRF 89

Query: 167 LDIHV 171
            DI V
Sbjct: 90  TDIRV 94


>gi|392587347|gb|EIW76681.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
            [Coniophora puteana RWD-64-598 SS2]
          Length = 1143

 Score =  325 bits (832), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 157/265 (59%), Positives = 196/265 (73%), Gaps = 6/265 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G IGYNQ NRIDTL+Y  VY Q+PMV++KTI +  
Sbjct: 684  GLIPYPHHNQSPRNTYQCAMGKQAIGAIGYNQFNRIDTLLYLSVYPQQPMVKTKTIELIG 743

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + +LPAGQNAT+AVMSYSGYDIEDALI+NKASLDRG+GRC V R +  ++++YPN T DR
Sbjct: 744  YDRLPAGQNATVAVMSYSGYDIEDALILNKASLDRGYGRCQVLRKNATLIRKYPNGTFDR 803

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPT----ISVSAISMATP 1088
            +    L+ D  +   ++  +  DG+   GE++    V VNK  PT     + +  + A P
Sbjct: 804  LADAPLD-DNGQIQKKYDIIQLDGLAGVGERVDPGDVYVNKQTPTNANDNTFTGQAAAVP 862

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
             YK  P+SYK  V  Y++K++VS    D  LIK+L+RQTRRPE+GDKFSSRHGQKGV GL
Sbjct: 863  -YKNAPLSYKSPVAGYIDKLMVSDTENDQTLIKVLIRQTRRPELGDKFSSRHGQKGVCGL 921

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            IV QEDMPFN+ GI PD IMNPHG 
Sbjct: 922  IVNQEDMPFNDQGINPDTIMNPHGF 946



 Score =  280 bits (715), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 130/202 (64%), Positives = 156/202 (77%)

Query: 1169 NPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKF 1228
            N +   G      YK  P+SYK  V  Y++K++VS    D  LIK+L+RQTRRPE+GDKF
Sbjct: 850  NDNTFTGQAAAVPYKNAPLSYKSPVAGYIDKLMVSDTENDQTLIKVLIRQTRRPELGDKF 909

Query: 1229 SSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGN 1288
            SSRHGQKGV GLIV QEDMPFN+ GI PD IMNPHG+PSRMTVGK+IELL+GKAG++ G 
Sbjct: 910  SSRHGQKGVCGLIVNQEDMPFNDQGINPDTIMNPHGFPSRMTVGKMIELLSGKAGVLSGK 969

Query: 1289 YKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQ 1348
             + GTAFGG+K+ D+   LI HG++Y GKD+  SGITGE LEAY+Y GP+YYQKLKHMV 
Sbjct: 970  LQYGTAFGGSKVEDMSRILIEHGFSYAGKDMLTSGITGELLEAYVYFGPIYYQKLKHMVM 1029

Query: 1349 DKIHARSRGPRVVLTRQPTGRR 1370
            DK+HAR+RGPR  LTRQPT  R
Sbjct: 1030 DKMHARARGPRATLTRQPTEGR 1051



 Score =  212 bits (539), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 111/206 (53%), Positives = 146/206 (70%), Gaps = 7/206 (3%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPK-IKAAQFDIVNH 191
           +D  DY  N  ++   Q  A ++ D   LF     ++   I DK++ K  +  +FD  N 
Sbjct: 362 VDDRDYVGNKRLELAGQLLALLFED---LFKTFNTNLKSAI-DKVLKKPSRTNEFDAFNT 417

Query: 192 MR--QDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
           M+   D IT+    AI TGNW+++RFKMER GVT VLSRLS+IS LGMMTRI+SQFEKTR
Sbjct: 418 MQFQGDHITSGFVRAISTGNWSLKRFKMERAGVTHVLSRLSFISALGMMTRISSQFEKTR 477

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHI 309
           KVSGPR+LQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT+ +E+ +++I Y +G+E I
Sbjct: 478 KVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDVEEEPIIRIAYMLGVEDI 537

Query: 310 AMFNGEELSSPGVYLVFVNGILAGIT 335
           ++ +G E+  P  ++V VNG + G+T
Sbjct: 538 SLASGTEIYGPHTFVVNVNGTIIGLT 563



 Score =  166 bits (421), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 82/136 (60%), Positives = 98/136 (72%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G   FDDFL +G +EYLDVNE NDS+IA+ ES I    TTHLEI PFT+LG  AG     
Sbjct: 631 GHLSFDDFLRQGLVEYLDVNEENDSYIALYESDI-VATTTHLEIEPFTILGAVAG----- 684

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQA+G IGYNQ NRIDTL+Y  VY Q+PMV+
Sbjct: 685 ---------LIPYPHHNQSPRNTYQCAMGKQAIGAIGYNQFNRIDTLLYLSVYPQQPMVK 735

Query: 808 SKTIRITNFHKLPAGK 823
           +KTI +  + +LPAG+
Sbjct: 736 TKTIELIGYDRLPAGQ 751



 Score = 95.9 bits (237), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 41/80 (51%), Positives = 62/80 (77%)

Query: 454 DDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELA 513
           ++A + L++  +AH+PV  + F+ KA+++A M RR+++ + D  M+DDRDY GNKRLELA
Sbjct: 317 EEALEALATIVLAHVPVNGLDFRPKAIFVATMTRRVLMCMDDEKMVDDRDYVGNKRLELA 376

Query: 514 GSLLSLMFEDVFKRFNSELK 533
           G LL+L+FED+FK FN+ LK
Sbjct: 377 GQLLALLFEDLFKTFNTNLK 396



 Score = 91.3 bits (225), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 39/65 (60%), Positives = 52/65 (80%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           + DKW L+ +FLK KGLVK HIDSF+YF++V+IK +++AN  + SDVDP F+LKY DIHV
Sbjct: 31  VEDKWLLLPAFLKVKGLVKQHIDSFNYFVDVDIKNIVKANNKVTSDVDPRFWLKYTDIHV 90

Query: 172 GIADK 176
           G  D+
Sbjct: 91  GFPDR 95



 Score = 82.8 bits (203), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/58 (63%), Positives = 46/58 (79%)

Query: 354 RQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKTE 411
           +  TPHECRLRD+TYSAPI V I+YTRG   V R ++ IGR+PIML+SSKC+L  K+E
Sbjct: 103 KSITPHECRLRDITYSAPILVTIQYTRGKNVVKRPNVNIGRLPIMLRSSKCILTGKSE 160


>gi|320593507|gb|EFX05916.1| DNA-directed RNA polymerase beta [Grosmannia clavigera kw1407]
          Length = 1165

 Score =  325 bits (832), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 149/263 (56%), Positives = 198/263 (75%), Gaps = 4/263 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+P+PHHNQ+PRNTYQCAMGKQA+G I YNQ +RIDTL+Y LVY QRPMV +KTI + +
Sbjct: 699  GLIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFHRIDTLLYTLVYPQRPMVATKTIELVH 758

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+ VMSYSGYDIEDAL++NKAS+DRG+GRC V+R     ++++PN   +R
Sbjct: 759  YDKLPAGQNATVVVMSYSGYDIEDALVLNKASIDRGYGRCQVFRKYVAEMQRFPNGRTER 818

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMP---TISVSAISMATPE 1089
            + GP  + D  K + +H A+D DG+ A G ++    V++ K  P   T +       + E
Sbjct: 819  VGGPERDKDGEK-ISKHAAIDNDGLAAVGWRVQHGDVMIKKESPVDLTTTGIGADRGSNE 877

Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
            Y++  ++Y+ + PSY++KV+VS   +D  + K+  RQTRRPEIGDKFSSRHGQKGV+G+I
Sbjct: 878  YRDSSLTYRINDPSYVDKVMVSQTEKDTLIFKVQTRQTRRPEIGDKFSSRHGQKGVVGII 937

Query: 1150 VEQEDMPFNESGICPDIIMNPHG 1172
            VEQEDMPF +SG+ PDIIMNPHG
Sbjct: 938  VEQEDMPFADSGLVPDIIMNPHG 960



 Score =  258 bits (660), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 120/199 (60%), Positives = 157/199 (78%), Gaps = 3/199 (1%)

Query: 1175 GCDRIT-EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
            G DR + EY++  ++Y+ + PSY++KV+VS   +D  + K+  RQTRRPEIGDKFSSRHG
Sbjct: 870  GADRGSNEYRDSSLTYRINDPSYVDKVMVSQTEKDTLIFKVQTRQTRRPEIGDKFSSRHG 929

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEG--NYKE 1291
            QKGV+G+IVEQEDMPF +SG+ PDIIMNPHGYPSRMTVGKL E L GKA ++ G  +Y  
Sbjct: 930  QKGVVGIIVEQEDMPFADSGLVPDIIMNPHGYPSRMTVGKLFECLTGKASVVAGRRDYGY 989

Query: 1292 GTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKI 1351
            G AF    +  + EEL+RHG+++ GKD F SG TGE +EA+I++GP+YYQ+LKHMVQDK+
Sbjct: 990  GDAFRSHPVEAMGEELVRHGFSWAGKDCFTSGTTGEPMEAHIFNGPIYYQRLKHMVQDKM 1049

Query: 1352 HARSRGPRVVLTRQPTGRR 1370
            H+R++GPR +LTRQPT  R
Sbjct: 1050 HSRAKGPRAILTRQPTEGR 1068



 Score =  185 bits (470), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 90/148 (60%), Positives = 111/148 (75%), Gaps = 2/148 (1%)

Query: 197 ITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVSGPRS 256
           I+  +  AIQTGNW+++RF M R GVT VLSRLSYIS LGMMTRI+SQFEKTRKVSGPR+
Sbjct: 438 ISQGMNRAIQTGNWSVKRFGMNRGGVTHVLSRLSYISALGMMTRISSQFEKTRKVSGPRA 497

Query: 257 LQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNI--GIEHIAMFNG 314
           LQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT  +E  +   ++++   +E +  F+G
Sbjct: 498 LQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTHVEEGPVRAWVFSLDDSVEPLRNFSG 557

Query: 315 EELSSPGVYLVFVNGILAGITCHHKEVC 342
            E+   G Y+V VNG    +T + +  C
Sbjct: 558 AEMHRAGWYVVHVNGTPYALTPNPRRFC 585



 Score =  156 bits (395), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 75/132 (56%), Positives = 93/132 (70%), Gaps = 15/132 (11%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKR 751
           FDDFL  G IEYLDVNE  D+ +A+ E+      +TH+EI PFT+LG  AG         
Sbjct: 650 FDDFLRRGVIEYLDVNEEQDALVALYEADC-TAASTHMEIEPFTILGAVAG--------- 699

Query: 752 FHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTI 811
                L+P+PHHNQ+PRNTYQCAMGKQA+G I YNQ +RIDTL+Y LVY QRPMV +KTI
Sbjct: 700 -----LIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFHRIDTLLYTLVYPQRPMVATKTI 754

Query: 812 RITNFHKLPAGK 823
            + ++ KLPAG+
Sbjct: 755 ELVHYDKLPAGQ 766



 Score =  100 bits (248), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 43/85 (50%), Positives = 67/85 (78%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           K+  V++  D L++  IAH+P+  + F  KA+Y+A+M RR+++A+ +P ++DDRD+ GNK
Sbjct: 325 KRNNVEEGLDALANIIIAHVPIDGLDFFPKAVYVAMMARRVLMAMHNPQLVDDRDFVGNK 384

Query: 509 RLELAGSLLSLMFEDVFKRFNSELK 533
           RLELAG LLSL+FED+FK+F S+L+
Sbjct: 385 RLELAGQLLSLLFEDLFKKFQSDLR 409



 Score = 80.9 bits (198), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 33/56 (58%), Positives = 44/56 (78%)

Query: 355 QTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
           + TP ECRLRD+TY+API VDI YTR  +R++R ++ +GRMP+ML+SSKC L   T
Sbjct: 103 EVTPMECRLRDMTYAAPIVVDIAYTRDKKRIIRRNITLGRMPVMLKSSKCCLSGAT 158



 Score = 69.7 bits (169), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/59 (54%), Positives = 44/59 (74%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           DK++L+ +FLK KGLVK HIDS+++F+  EIK ++ AN  I SDV   FYL++ DI VG
Sbjct: 30  DKYQLLPAFLKVKGLVKQHIDSYNFFVEQEIKDIVTANRTIRSDVQSGFYLEFTDIRVG 88


>gi|336374505|gb|EGO02842.1| hypothetical protein SERLA73DRAFT_84701 [Serpula lacrymans var.
            lacrymans S7.3]
 gi|336387393|gb|EGO28538.1| hypothetical protein SERLADRAFT_359856 [Serpula lacrymans var.
            lacrymans S7.9]
          Length = 1162

 Score =  324 bits (831), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 161/266 (60%), Positives = 195/266 (73%), Gaps = 8/266 (3%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G IGYNQ NRIDTL+Y  VY Q+PMV++KTI +  
Sbjct: 684  GLIPYPHHNQSPRNTYQCAMGKQAIGAIGYNQFNRIDTLLYLSVYPQQPMVKTKTIELIG 743

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + +LPAGQNAT+AVMSYSGYDIEDALI+NKASLDRG+GRC V R +  ++++YPN T DR
Sbjct: 744  YDRLPAGQNATVAVMSYSGYDIEDALILNKASLDRGYGRCQVLRKNATLIRKYPNGTFDR 803

Query: 1033 IL-GPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPT----ISVSAISMAT 1087
            +   PL E    +  Y    L  DG+   GE++    V +NK  PT     S +  + A 
Sbjct: 804  LADAPLDENGQIQKKYDIVQL--DGLAGVGERVDPGDVYINKQTPTNANDNSFTGQAAAV 861

Query: 1088 PEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
            P YK  P++YK  V  Y++KVLVS    D  LIK+L+RQTRRPE+GDKFSSRHGQKGV G
Sbjct: 862  P-YKNSPMTYKSPVAGYIDKVLVSDTENDQTLIKVLIRQTRRPELGDKFSSRHGQKGVCG 920

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            LIV QEDMPFN+ GI PD IMNPHG 
Sbjct: 921  LIVNQEDMPFNDQGINPDTIMNPHGF 946



 Score =  267 bits (683), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 130/221 (58%), Positives = 155/221 (70%), Gaps = 19/221 (8%)

Query: 1169 NPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKF 1228
            N +   G      YK  P++YK  V  Y++KVLVS    D  LIK+L+RQTRRPE+GDKF
Sbjct: 850  NDNSFTGQAAAVPYKNSPMTYKSPVAGYIDKVLVSDTENDQTLIKVLIRQTRRPELGDKF 909

Query: 1229 SSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGN 1288
            SSRHGQKGV GLIV QEDMPFN+ GI PD IMNPHG+PSRMTVGK+IELLAGKAG++ G 
Sbjct: 910  SSRHGQKGVCGLIVNQEDMPFNDQGINPDTIMNPHGFPSRMTVGKMIELLAGKAGVLSGK 969

Query: 1289 YKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKL----- 1343
             + GTAFGG+K+ D+   LI  G+NY GKD+  SGITGE +EAY+Y GP+YYQKL     
Sbjct: 970  LQYGTAFGGSKVEDMSRILIEKGFNYAGKDMLTSGITGEPMEAYVYFGPIYYQKLSEIVV 1029

Query: 1344 --------------KHMVQDKIHARSRGPRVVLTRQPTGRR 1370
                          +HMV DK+HAR+RGPR  LTRQPT  R
Sbjct: 1030 AYLSSSLNSSNLATEHMVMDKMHARARGPRATLTRQPTEGR 1070



 Score =  209 bits (531), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 109/206 (52%), Positives = 145/206 (70%), Gaps = 7/206 (3%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPK-IKAAQFDIVNH 191
           +D  DY  N  ++   Q  A ++ D   LF     ++   I DK++ K  +  +FD  N 
Sbjct: 362 VDDRDYVGNKRLELAGQLLALLFED---LFKTFNSNLKSSI-DKVLKKPSRTNEFDAFNT 417

Query: 192 MR--QDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
           M+   D IT+    AI TGNW+++RFKMER GVT VLSRLS+IS LGMMTRI+SQFEKTR
Sbjct: 418 MQFQGDHITSGFIRAISTGNWSLKRFKMERAGVTHVLSRLSFISALGMMTRISSQFEKTR 477

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHI 309
           KVSGPR+LQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT+ +E+ ++++ + +G+E I
Sbjct: 478 KVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDVEEEPIVRLAFMLGVEDI 537

Query: 310 AMFNGEELSSPGVYLVFVNGILAGIT 335
           ++  G E+  P  ++V VNG + G+T
Sbjct: 538 SLATGTEIYGPHTFVVNVNGTIVGLT 563



 Score =  172 bits (436), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 90/160 (56%), Positives = 107/160 (66%), Gaps = 25/160 (15%)

Query: 674 CQP-------RPTFLNMHQFL---GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRP 723
           C+P       RP   + H  L   G   FDDFL +G +EYLDVNE NDS+IA+ ES I P
Sbjct: 607 CRPMIIVESGRPRVTSDHIMLLKKGVATFDDFLRKGLVEYLDVNEENDSYIALYESDIVP 666

Query: 724 GVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCI 783
             TTHLEI PFTLLG  AG              L+PYPHHNQ+PRNTYQCAMGKQA+G I
Sbjct: 667 -TTTHLEIEPFTLLGAVAG--------------LIPYPHHNQSPRNTYQCAMGKQAIGAI 711

Query: 784 GYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
           GYNQ NRIDTL+Y  VY Q+PMV++KTI +  + +LPAG+
Sbjct: 712 GYNQFNRIDTLLYLSVYPQQPMVKTKTIELIGYDRLPAGQ 751



 Score = 99.8 bits (247), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 51/139 (36%), Positives = 87/139 (62%), Gaps = 1/139 (0%)

Query: 397 IMLQSSKCVLRNKTEYTSSSRRASTSSVTMHSQRTSPLLSCKKLRQKRFQTYKKTPVDDA 456
           I+L ++      K+ ++++   A+   V  H Q    + +  K+ +K     ++   ++A
Sbjct: 261 ILLLTAGNTEAYKSAFSANLEEAAKLGVFTHHQALEWIGTRVKVNRKVVGP-RRPAWEEA 319

Query: 457 RDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGSL 516
            + L++  +AH+PV  +  + KA+++A M RR+++A+ D  M+DDRDY GNKRLELAG L
Sbjct: 320 LEALATIVLAHVPVKGLDLRSKAIFVATMTRRVLMAMDDEKMVDDRDYVGNKRLELAGQL 379

Query: 517 LSLMFEDVFKRFNSELKET 535
           L+L+FED+FK FNS LK +
Sbjct: 380 LALLFEDLFKTFNSNLKSS 398



 Score = 88.6 bits (218), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/108 (44%), Positives = 67/108 (62%), Gaps = 7/108 (6%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           + DKW L+ +FLK KGLVK HIDSF+YF++V+IK +++AN  + SDVDP F+LKY DI+V
Sbjct: 31  VEDKWLLLPAFLKVKGLVKQHIDSFNYFVDVDIKNIVKANNKVTSDVDPRFWLKYTDINV 90

Query: 172 GIADKIIPKIKAAQFDIVNH---MRQDTITNALTAAIQ--TGNWTIRR 214
           G  D+    + A    I  H   +R  T +  +   IQ   G   +RR
Sbjct: 91  GYPDRT--DLDAIDKSITPHECRLRDITYSAPVVVTIQYTRGKSVVRR 136



 Score = 80.9 bits (198), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 35/58 (60%), Positives = 45/58 (77%)

Query: 354 RQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKTE 411
           +  TPHECRLRD+TYSAP+ V I+YTRG   V R ++ IGR+PIML+S+KC+L  K E
Sbjct: 103 KSITPHECRLRDITYSAPVVVTIQYTRGKSVVRRPNVNIGRLPIMLRSNKCILTGKNE 160


>gi|50546993|ref|XP_500966.1| YALI0B16258p [Yarrowia lipolytica]
 gi|49646832|emb|CAG83219.1| YALI0B16258p [Yarrowia lipolytica CLIB122]
          Length = 1169

 Score =  324 bits (830), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 155/277 (55%), Positives = 206/277 (74%), Gaps = 18/277 (6%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ NRIDTL+Y +VY Q+PMV+++TI + +
Sbjct: 697  GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLNRIDTLLYLMVYPQQPMVKTRTIELID 756

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYP-NQTHD 1031
            + KLPAGQNAT+AVMSYSGYDIEDAL++NK+S+DRGFGRC V + +  VLK+Y  +   D
Sbjct: 757  YDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCQVLKKNTTVLKRYAGSDAVD 816

Query: 1032 RILGPLLEADTRKPVY-----------RHRALDQDGIVAPGEQICERQVLVNKSMPTISV 1080
            R+ G  +E   RK  +           +H  L  DG+   G+ +   QV VN+ +P  + 
Sbjct: 817  RLDGVKME--RRKCAWDPNSFEEVVTEQHEVLGPDGLGEVGKPVKNSQVYVNRCIPVNNS 874

Query: 1081 SAI----SMATPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKF 1136
             ++    + ++ EY+E PV+Y+G  PS ++KV+VS   ++ +LIK+LLRQTRRPE+GDKF
Sbjct: 875  DSLLNQSTSSSTEYREAPVTYRGPEPSIIDKVMVSVTDKELYLIKVLLRQTRRPELGDKF 934

Query: 1137 SSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            SSRHGQKGV G+IV QEDMPF++SG+CPDIIMNPHG 
Sbjct: 935  SSRHGQKGVCGIIVNQEDMPFSDSGVCPDIIMNPHGF 971



 Score =  291 bits (746), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 129/193 (66%), Positives = 165/193 (85%)

Query: 1180 TEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1239
            TEY+E PV+Y+G  PS ++KV+VS   ++ +LIK+LLRQTRRPE+GDKFSSRHGQKGV G
Sbjct: 886  TEYREAPVTYRGPEPSIIDKVMVSVTDKELYLIKVLLRQTRRPELGDKFSSRHGQKGVCG 945

Query: 1240 LIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTK 1299
            +IV QEDMPF++SG+CPDIIMNPHG+PSRMTVGK+IEL++GKAG+++G+ + GT FGG+K
Sbjct: 946  IIVNQEDMPFSDSGVCPDIIMNPHGFPSRMTVGKMIELISGKAGVLDGSLQYGTCFGGSK 1005

Query: 1300 LVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPR 1359
            L D+ + L+ HGY+Y GKD+ YSG +GE L+AYI+ GP+YYQKLKHMV DK+HAR RGPR
Sbjct: 1006 LEDMSKILVDHGYSYSGKDMLYSGTSGECLQAYIFFGPIYYQKLKHMVMDKMHARPRGPR 1065

Query: 1360 VVLTRQPTGRRWK 1372
             VLTRQPT  R +
Sbjct: 1066 AVLTRQPTEGRSR 1078



 Score =  201 bits (511), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 109/206 (52%), Positives = 145/206 (70%), Gaps = 7/206 (3%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPK-IKAAQFDIVNH 191
           ID  DY  N  ++   Q  + ++ D   LF     D    I DKI+ +  +A+ FD + +
Sbjct: 375 IDDRDYVGNKRLELAGQLLSLLFED---LFKKFNSDFKANI-DKILKRPNRASMFDALLN 430

Query: 192 MR--QDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
           +   + +IT+ +  AI TGNW+++RFKMER GVT VLSRLSYIS LGMMTRI+SQFEK+R
Sbjct: 431 LETHRGSITSGMNRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSR 490

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHI 309
           KVSGPR+LQ SQ+GMLC SDTPEGEACGLVKNLALMTHITT+++E  +  + Y +G E+I
Sbjct: 491 KVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTDDEEAPVRNLCYLLGAENI 550

Query: 310 AMFNGEELSSPGVYLVFVNGILAGIT 335
           ++  G EL + G + V++NG L GIT
Sbjct: 551 SVIGGAELHAEGSFGVYLNGTLIGIT 576



 Score =  165 bits (417), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 80/136 (58%), Positives = 98/136 (72%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G   FDDFL +G +EYLDVNE NDS IA+ E+ I    TTHLEI PFT+LG  AG     
Sbjct: 644 GEMTFDDFLKQGLVEYLDVNEENDSFIALYENNIN-AETTHLEIEPFTVLGAVAG----- 697

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ NRIDTL+Y +VY Q+PMV+
Sbjct: 698 ---------LIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLNRIDTLLYLMVYPQQPMVK 748

Query: 808 SKTIRITNFHKLPAGK 823
           ++TI + ++ KLPAG+
Sbjct: 749 TRTIELIDYDKLPAGQ 764



 Score =  112 bits (280), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 53/112 (47%), Positives = 78/112 (69%)

Query: 422 SSVTMHSQRTSPLLSCKKLRQKRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMY 481
           S + + +QR +      K++  R    K T   +  + ++++ IAHI + NM F  KA+Y
Sbjct: 298 SKLGVFTQRQALEYLGSKVKTSRRSNVKLTHYQEGLEAVATSIIAHISINNMDFTEKALY 357

Query: 482 LAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
           +AVM RR+++A++DP M+DDRDY GNKRLELAG LLSL+FED+FK+FNS+ K
Sbjct: 358 IAVMTRRVIMAMADPKMIDDRDYVGNKRLELAGQLLSLLFEDLFKKFNSDFK 409



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/73 (56%), Positives = 53/73 (72%), Gaps = 6/73 (8%)

Query: 100 TDETSKLKDSPEIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVD 159
           TDE S  +D      KW L+ +FLK KGLVK H+DSF+YF++V++KK++ AN  + SDVD
Sbjct: 39  TDEISTAED------KWNLLPAFLKVKGLVKQHLDSFNYFVDVDLKKILAANQMVLSDVD 92

Query: 160 PLFYLKYLDIHVG 172
           P FYLKY DI VG
Sbjct: 93  PEFYLKYKDIRVG 105



 Score = 80.9 bits (198), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 40/72 (55%), Positives = 54/72 (75%), Gaps = 1/72 (1%)

Query: 341 VCKPEIE-ESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIML 399
           V KP I+ +  N      PHECRLRD+TY+API VDIEYT+  + V++ +L IG+MPIML
Sbjct: 104 VGKPGIKFDDKNDDNAIFPHECRLRDMTYAAPIYVDIEYTKERKIVIQRNLEIGKMPIML 163

Query: 400 QSSKCVLRNKTE 411
           +SSKC L+++TE
Sbjct: 164 RSSKCHLQDQTE 175


>gi|361131372|gb|EHL03070.1| putative DNA-directed RNA polymerase III subunit RPC2 [Glarea
            lozoyensis 74030]
          Length = 1184

 Score =  323 bits (829), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 150/265 (56%), Positives = 195/265 (73%), Gaps = 4/265 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ +RIDTL+Y +VY Q+PMV+S+TI +  
Sbjct: 718  GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFSRIDTLLYLMVYPQQPMVKSRTIELIK 777

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+AVMS+SGYDIEDAL++NKAS DRGFGRC V+R      ++YPN+T DR
Sbjct: 778  YDKLPAGQNATVAVMSFSGYDIEDALVLNKASCDRGFGRCQVFRKYATQFRKYPNRTQDR 837

Query: 1033 ILGPLL-EADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATP 1088
            I    + E D  KP  +H  L  DG+   GEQ+   +  +NK +P  +        + T 
Sbjct: 838  IGDKQMDERDPSKPSKKHAILGSDGMALVGEQVNSGETYLNKEVPINTGGNGIGSDVGTN 897

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
            E+K  P++Y+   PSY++K+++S    +  +IK+  RQTRRPE+GDKFSSRHGQKGV+G+
Sbjct: 898  EHKPAPMTYRLPDPSYIDKIMISQTENETMVIKVQTRQTRRPELGDKFSSRHGQKGVVGI 957

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            IV QEDMPF +SG+ PDIIMNPHG 
Sbjct: 958  IVNQEDMPFADSGVTPDIIMNPHGF 982



 Score =  273 bits (697), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 131/240 (54%), Positives = 180/240 (75%), Gaps = 2/240 (0%)

Query: 1135 KFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGLK-GCDRIT-EYKEVPVSYKGS 1192
            K S +H   G  G+ +  E +   E+ +  ++ +N  G   G D  T E+K  P++Y+  
Sbjct: 850  KPSKKHAILGSDGMALVGEQVNSGETYLNKEVPINTGGNGIGSDVGTNEHKPAPMTYRLP 909

Query: 1193 VPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNES 1252
             PSY++K+++S    +  +IK+  RQTRRPE+GDKFSSRHGQKGV+G+IV QEDMPF +S
Sbjct: 910  DPSYIDKIMISQTENETMVIKVQTRQTRRPELGDKFSSRHGQKGVVGIIVNQEDMPFADS 969

Query: 1253 GICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGY 1312
            G+ PDIIMNPHG+PSRMTVGK++ELL+GKAG++ G+ + GTAFGG+ + D+ + LI++G+
Sbjct: 970  GVTPDIIMNPHGFPSRMTVGKMLELLSGKAGVLNGSLEYGTAFGGSNVDDMGDILIKNGF 1029

Query: 1313 NYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
            +Y GKD   SGITGE+L AYI+ GP+YYQKLKHMVQDK+H+RSRGPR +LTRQPT  R +
Sbjct: 1030 SYSGKDFVTSGITGESLPAYIFFGPIYYQKLKHMVQDKMHSRSRGPRAILTRQPTEGRSR 1089



 Score =  213 bits (542), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 110/209 (52%), Positives = 144/209 (68%), Gaps = 5/209 (2%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVNHM 192
           +D  DY  N  ++   Q  + ++ D   LF     D+ + I   +  K + ++FD  NHM
Sbjct: 394 VDDRDYVGNKRLELAGQLLSLLFED---LFKKFNTDLKMNIDKVLSKKNRTSEFDAFNHM 450

Query: 193 RQ--DTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRK 250
           +   + IT  +  AI TGNW+++RFKMER GVT VLSRLSYIS LGMMTRI+SQFEKTRK
Sbjct: 451 QSHGNYITLGMNRAISTGNWSVKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKTRK 510

Query: 251 VSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIA 310
           VSGPR+LQ SQ+GMLCPSDTPEGEACGLVKNLALMTHITT +DE+ + K+++ +G E I 
Sbjct: 511 VSGPRALQPSQFGMLCPSDTPEGEACGLVKNLALMTHITTYDDEEPIKKLVFFLGAEDIL 570

Query: 311 MFNGEELSSPGVYLVFVNGILAGITCHHK 339
             +G+E+   G Y++FVNG    +T   K
Sbjct: 571 SVSGQEIHGKGAYVIFVNGTPLALTVQPK 599



 Score =  160 bits (404), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 76/133 (57%), Positives = 95/133 (71%), Gaps = 15/133 (11%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSE-SGIRPGVTTHLEIAPFTLLGVCAGIELLQYNK 750
           FDDFLY G +EY+DVNE ND+ IA++E   +     THLEI PFT+LG  AG        
Sbjct: 667 FDDFLYRGMVEYVDVNEENDTLIALTEHDALTTAGITHLEIEPFTILGAVAG-------- 718

Query: 751 RFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKT 810
                 L+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ +RIDTL+Y +VY Q+PMV+S+T
Sbjct: 719 ------LIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFSRIDTLLYLMVYPQQPMVKSRT 772

Query: 811 IRITNFHKLPAGK 823
           I +  + KLPAG+
Sbjct: 773 IELIKYDKLPAGQ 785



 Score =  107 bits (267), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 44/85 (51%), Positives = 68/85 (80%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           ++  + DA + L++  I H+PV+ + F+ KA+Y+  M+RR+++A+ DP ++DDRDY GNK
Sbjct: 344 RRNHIQDALEALANIIITHVPVVGLDFRPKALYICFMVRRVLMAVKDPKLVDDRDYVGNK 403

Query: 509 RLELAGSLLSLMFEDVFKRFNSELK 533
           RLELAG LLSL+FED+FK+FN++LK
Sbjct: 404 RLELAGQLLSLLFEDLFKKFNTDLK 428



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/65 (58%), Positives = 51/65 (78%)

Query: 113 RDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           +DKW LV +FLK KGLVK HIDSF++FI  EIK++++AN  I SD DP F+L+Y DI VG
Sbjct: 59  KDKWNLVPAFLKVKGLVKQHIDSFNFFIETEIKEIVKANKRITSDADPNFFLEYEDITVG 118

Query: 173 IADKI 177
           I +++
Sbjct: 119 IPERL 123



 Score = 72.0 bits (175), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/57 (56%), Positives = 41/57 (71%)

Query: 355 QTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKTE 411
           + TP+ECRLRD+TY+API V   YT+G Q   RS + IGRMPIML+S+ C L  K +
Sbjct: 133 EITPNECRLRDMTYAAPIRVTFRYTKGKQMTRRSHIPIGRMPIMLKSATCRLAGKND 189


>gi|403415400|emb|CCM02100.1| predicted protein [Fibroporia radiculosa]
          Length = 1181

 Score =  323 bits (828), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 156/265 (58%), Positives = 193/265 (72%), Gaps = 6/265 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G IGYNQ NRIDTL+Y  VY Q+PMV++KTI +  
Sbjct: 694  GLIPYPHHNQSPRNTYQCAMGKQAIGAIGYNQLNRIDTLLYLSVYPQQPMVKTKTIELIG 753

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + +LPAGQNAT+AVMSYSGYDIEDALI NKASLDRG+GRC V R +  ++++YPN T DR
Sbjct: 754  YDRLPAGQNATVAVMSYSGYDIEDALIQNKASLDRGYGRCQVLRKNATLIRKYPNGTFDR 813

Query: 1033 IL-GPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAI---SMATP 1088
            +   P+ E+   +  Y    +  DG+   GE++    V +NK  PT +         AT 
Sbjct: 814  LADAPVDESGQTQKKY--DIIQLDGLAGVGERVDPGDVYINKQTPTNANDNTFTGQAATV 871

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
             YK  P++YK  V  Y++KV+VS    D  LIK+L+RQTRRPE+GDKFSSRHGQKGV GL
Sbjct: 872  PYKNAPMTYKSPVAGYIDKVMVSDTENDQTLIKVLIRQTRRPELGDKFSSRHGQKGVCGL 931

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            IV QEDMPFN+ G+ PD IMNPHG 
Sbjct: 932  IVNQEDMPFNDQGVVPDTIMNPHGF 956



 Score =  248 bits (633), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 124/222 (55%), Positives = 150/222 (67%), Gaps = 20/222 (9%)

Query: 1169 NPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKF 1228
            N +   G      YK  P++YK  V  Y++KV+VS    D  LIK+L+RQTRRPE+GDKF
Sbjct: 860  NDNTFTGQAATVPYKNAPMTYKSPVAGYIDKVMVSDTENDQTLIKVLIRQTRRPELGDKF 919

Query: 1229 SSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGN 1288
            SSRHGQKGV GLIV QEDMPFN+ G+ PD IMNPHG+PSRMTVGK+IELLAGKAG++ G 
Sbjct: 920  SSRHGQKGVCGLIVNQEDMPFNDQGVVPDTIMNPHGFPSRMTVGKMIELLAGKAGVLAGK 979

Query: 1289 YKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMV- 1347
             + GTAFGG+K+ D+   LI HG++Y GKD+  SGITGE +EAY+Y GP+YYQKL   V 
Sbjct: 980  LQYGTAFGGSKVEDMSRILIEHGFSYAGKDMLTSGITGEPMEAYVYFGPIYYQKLSAPVC 1039

Query: 1348 ----QDKIHARSR---------------GPRVVLTRQPTGRR 1370
                 D   AR+R               GPR  LTRQPT  R
Sbjct: 1040 VVAHGDGQDARAREVSDAVVSSKQKLSAGPRATLTRQPTEGR 1081



 Score =  212 bits (539), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 112/216 (51%), Positives = 148/216 (68%), Gaps = 17/216 (7%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPK-IKAAQFDIVNH 191
           +D  DY  N  ++   Q  A ++ D   LF     ++   I DK++ K  + ++FD  N 
Sbjct: 362 VDDRDYVGNKRLELAGQLLALLFED---LFKTFNTNLKSAI-DKVLKKPSRTSEFDAFNT 417

Query: 192 MR--QDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
           M+   D IT+    AI TGNW+++RFKM+R GVT VLSRLS+IS LGMMTRI+SQFEKTR
Sbjct: 418 MQFQGDHITSGFVRAISTGNWSLKRFKMDRAGVTHVLSRLSFISALGMMTRISSQFEKTR 477

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIE-- 307
           KVSGPR+LQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT+ DE+ +++I + +G+E  
Sbjct: 478 KVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDVDEEPIIRIAFMLGVEGA 537

Query: 308 --------HIAMFNGEELSSPGVYLVFVNGILAGIT 335
                   HI++  G E+  PG ++V VNG + G+T
Sbjct: 538 YFFCICAGHISLVTGAEIYGPGTFVVNVNGTIIGLT 573



 Score =  169 bits (429), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 83/136 (61%), Positives = 99/136 (72%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G   FDDFL +G +EYLDVNE NDS+IA+ E+ I P  TTHLEI PFTLLG  AG     
Sbjct: 641 GLLMFDDFLRKGLVEYLDVNEENDSYIALYEADIVPS-TTHLEIEPFTLLGAVAG----- 694

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQA+G IGYNQ NRIDTL+Y  VY Q+PMV+
Sbjct: 695 ---------LIPYPHHNQSPRNTYQCAMGKQAIGAIGYNQLNRIDTLLYLSVYPQQPMVK 745

Query: 808 SKTIRITNFHKLPAGK 823
           +KTI +  + +LPAG+
Sbjct: 746 TKTIELIGYDRLPAGQ 761



 Score = 98.6 bits (244), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 42/80 (52%), Positives = 63/80 (78%)

Query: 454 DDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELA 513
           ++A + L++  +AH+PV  + F+ KA+++A M RR+++A+ D  M+DDRDY GNKRLELA
Sbjct: 317 EEALEALATIVLAHVPVQGLDFRSKAIFVATMTRRVLMAMDDEKMVDDRDYVGNKRLELA 376

Query: 514 GSLLSLMFEDVFKRFNSELK 533
           G LL+L+FED+FK FN+ LK
Sbjct: 377 GQLLALLFEDLFKTFNTNLK 396



 Score = 88.6 bits (218), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 39/65 (60%), Positives = 51/65 (78%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           I DKW L+ +FLK KGLVK HIDSF+YF++V+IK +++AN  + SDVDP F+LKY DI V
Sbjct: 31  IEDKWLLLPAFLKVKGLVKQHIDSFNYFVDVDIKNILKANNKVTSDVDPRFWLKYTDIVV 90

Query: 172 GIADK 176
           G  D+
Sbjct: 91  GFPDR 95



 Score = 79.7 bits (195), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/68 (52%), Positives = 48/68 (70%)

Query: 344 PEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSK 403
           P+  ++    +  TPHECRLRD TY API V I+YTRG   V R+++ IGR+PIML+S+K
Sbjct: 93  PDRTDADAVDKSVTPHECRLRDTTYGAPILVTIQYTRGKSVVRRANVNIGRLPIMLRSNK 152

Query: 404 CVLRNKTE 411
           CVL  + E
Sbjct: 153 CVLTGRNE 160


>gi|426193713|gb|EKV43646.1| hypothetical protein AGABI2DRAFT_188003 [Agaricus bisporus var.
            bisporus H97]
          Length = 1142

 Score =  323 bits (828), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 154/265 (58%), Positives = 196/265 (73%), Gaps = 6/265 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G IGYNQ NRIDTL+Y  VY Q+PMV++KTI +  
Sbjct: 682  GLIPYPHHNQSPRNTYQCAMGKQAIGAIGYNQFNRIDTLLYLSVYPQQPMVKTKTIELIG 741

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+AVMSYSGYDIEDALI+NKASLDRG+GRC V R +  ++++YPN T+DR
Sbjct: 742  YDKLPAGQNATVAVMSYSGYDIEDALILNKASLDRGYGRCQVLRKNATLIRKYPNGTYDR 801

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPT----ISVSAISMATP 1088
            +    ++ +      R+  +  DG+   GE++    + VNK  PT     S +  + + P
Sbjct: 802  LADAPIDENGMT-AKRYDIIQPDGLAGVGERVDPGDIYVNKQSPTNASDNSFTGQAASVP 860

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
             YK  P++YK  V  Y++KV+V+    +  LIK+L+RQTRRPE+GDKFSSRHGQKGV GL
Sbjct: 861  -YKNTPLTYKSPVAGYIDKVMVTDTENEQTLIKVLIRQTRRPELGDKFSSRHGQKGVCGL 919

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            IV QEDMPFN+ GI PD IMNPHG 
Sbjct: 920  IVNQEDMPFNDQGINPDTIMNPHGF 944



 Score =  276 bits (705), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 126/189 (66%), Positives = 153/189 (80%)

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
            YK  P++YK  V  Y++KV+V+    +  LIK+L+RQTRRPE+GDKFSSRHGQKGV GLI
Sbjct: 861  YKNTPLTYKSPVAGYIDKVMVTDTENEQTLIKVLIRQTRRPELGDKFSSRHGQKGVCGLI 920

Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
            V QEDMPFN+ GI PD IMNPHG+PSRMTVGK+IELLAGKAG++ G  + GTAFGG+K+ 
Sbjct: 921  VNQEDMPFNDQGINPDTIMNPHGFPSRMTVGKMIELLAGKAGVLTGKLQYGTAFGGSKVE 980

Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
            D+   LI +G++Y GKD+  SGITGE LEAY+Y GP+YYQKLKHMV DK+HAR+RGPR  
Sbjct: 981  DMSRILIENGFSYAGKDMLTSGITGEPLEAYVYFGPIYYQKLKHMVMDKMHARARGPRAT 1040

Query: 1362 LTRQPTGRR 1370
            LTRQPT  R
Sbjct: 1041 LTRQPTEGR 1049



 Score =  207 bits (528), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 108/208 (51%), Positives = 144/208 (69%), Gaps = 7/208 (3%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPK-IKAAQFDIVNH 191
           +D  DY  N  ++   Q  A ++ D   LF     ++   I DK++ K  +  +FD  N 
Sbjct: 360 VDDRDYVGNKRLELAGQLLALLFED---LFKTYNSNLKSAI-DKVLKKPSRTTEFDAYNT 415

Query: 192 MR--QDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
           M+   D +T     AI TGNW+++RFKMER GVT VLSRLS+IS LGMMTRI+SQFEKTR
Sbjct: 416 MQFQGDHLTAGFVRAISTGNWSLKRFKMERAGVTHVLSRLSFISALGMMTRISSQFEKTR 475

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHI 309
           KVSGPR+LQ SQWG+LCPSDTPEGEACGLVKNLALMTHITT+ +E+ ++++ + +G+E I
Sbjct: 476 KVSGPRALQPSQWGVLCPSDTPEGEACGLVKNLALMTHITTDVEEEPIIQLAFMLGVEDI 535

Query: 310 AMFNGEELSSPGVYLVFVNGILAGITCH 337
            +  G E+  P  ++V VNG + G+T H
Sbjct: 536 RLATGTEIYGPNTFVVNVNGTIIGLTRH 563



 Score =  170 bits (430), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 84/136 (61%), Positives = 99/136 (72%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G   FDDFL +G +EYLDVNE ND++IA+ ES I P  TTHLEI PFTLLG  AG     
Sbjct: 629 GTATFDDFLRKGVVEYLDVNEENDTYIALYESDITPH-TTHLEIEPFTLLGAVAG----- 682

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQA+G IGYNQ NRIDTL+Y  VY Q+PMV+
Sbjct: 683 ---------LIPYPHHNQSPRNTYQCAMGKQAIGAIGYNQFNRIDTLLYLSVYPQQPMVK 733

Query: 808 SKTIRITNFHKLPAGK 823
           +KTI +  + KLPAG+
Sbjct: 734 TKTIELIGYDKLPAGQ 749



 Score = 96.7 bits (239), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 41/80 (51%), Positives = 64/80 (80%)

Query: 454 DDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELA 513
           ++A + L++  +AH+PV  +  + KA+++A M RR+++A++D +M+DDRDY GNKRLELA
Sbjct: 315 EEALEALATIVLAHVPVNGLDLRPKAIFVATMTRRVLMAMNDENMVDDRDYVGNKRLELA 374

Query: 514 GSLLSLMFEDVFKRFNSELK 533
           G LL+L+FED+FK +NS LK
Sbjct: 375 GQLLALLFEDLFKTYNSNLK 394



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 38/65 (58%), Positives = 53/65 (81%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           + DKW L+ +FLK KGLVK HIDSF+YF++V++K +++AN  I SDVDP F+LKY+DI+V
Sbjct: 30  VEDKWLLLPAFLKVKGLVKQHIDSFNYFVDVDLKNIVKANNKITSDVDPRFWLKYVDINV 89

Query: 172 GIADK 176
           G  D+
Sbjct: 90  GFPDR 94



 Score = 81.3 bits (199), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 38/68 (55%), Positives = 51/68 (75%), Gaps = 1/68 (1%)

Query: 344 PEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSK 403
           P+  E     ++ TPHECRLRD TYSAPI V I+YTRG + +V+ ++ IGR+PIML+S+K
Sbjct: 92  PDRNEMETVEKKVTPHECRLRDTTYSAPIIVTIQYTRG-KNIVQRNVNIGRLPIMLRSNK 150

Query: 404 CVLRNKTE 411
           CVL  +TE
Sbjct: 151 CVLTGRTE 158


>gi|302927105|ref|XP_003054428.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256735369|gb|EEU48715.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 1156

 Score =  323 bits (828), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 150/265 (56%), Positives = 196/265 (73%), Gaps = 4/265 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+P+PHHNQ+PRNTYQCAMGKQA+G I YNQ NRIDTL+Y LVY QRPMV SKTI++  
Sbjct: 688  GLIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLYTLVYPQRPMVISKTIQLIG 747

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+ VMSYSGYDIEDAL++NKAS+DRGFGRC V+R     L++YPN   +R
Sbjct: 748  YDKLPAGQNATVVVMSYSGYDIEDALVLNKASIDRGFGRCQVFRKYTTELQKYPNGRRER 807

Query: 1033 ILGPL-LEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMP---TISVSAISMATP 1088
            I  P   E   ++ + +H  LD DG+   G +I   + ++ K  P   T +   +     
Sbjct: 808  IGDPQNEEGKVKQRIKKHEGLDDDGLAIVGYRIHNGEAMIKKETPLDQTTTGIGMDRGPS 867

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
            EY++  VSY+ + P+Y++KV+VS   +D  +IK+  RQTRRPE+GDKFSSRHGQKGV+G+
Sbjct: 868  EYRDSSVSYRIADPAYIDKVMVSQTEKDTTVIKVQTRQTRRPELGDKFSSRHGQKGVVGI 927

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            IV+QED+PF++ G+ PDIIMNPHG 
Sbjct: 928  IVDQEDLPFSDKGLTPDIIMNPHGF 952



 Score =  256 bits (655), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 118/201 (58%), Positives = 161/201 (80%), Gaps = 3/201 (1%)

Query: 1175 GCDR-ITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
            G DR  +EY++  VSY+ + P+Y++KV+VS   +D  +IK+  RQTRRPE+GDKFSSRHG
Sbjct: 861  GMDRGPSEYRDSSVSYRIADPAYIDKVMVSQTEKDTTVIKVQTRQTRRPELGDKFSSRHG 920

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEG--NYKE 1291
            QKGV+G+IV+QED+PF++ G+ PDIIMNPHG+PSRMTVGKL+E L GKA ++ G  +Y  
Sbjct: 921  QKGVVGIIVDQEDLPFSDKGLTPDIIMNPHGFPSRMTVGKLLECLTGKASIIHGRPDYGF 980

Query: 1292 GTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKI 1351
            G AF    L ++ + L+ HG++++GKD F SG+TGE LEAYI++GP+YYQ+LKHMVQDK+
Sbjct: 981  GDAFRSHPLEEMSKVLVDHGFSWEGKDYFTSGVTGEPLEAYIFNGPIYYQRLKHMVQDKM 1040

Query: 1352 HARSRGPRVVLTRQPTGRRWK 1372
            H+RSRGP+ +LTRQPT  R +
Sbjct: 1041 HSRSRGPKAILTRQPTEGRSR 1061



 Score =  181 bits (459), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 108/236 (45%), Positives = 146/236 (61%), Gaps = 15/236 (6%)

Query: 118 LVLSFLKEKGLVKPH----IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGI 173
           + ++ +  K L+  H    +D  D+  N  ++   Q  + ++ D   LF    +++ + I
Sbjct: 345 IYVAMMTRKVLMAAHNPKLVDDRDFVGNKRLELAGQLLSLLFED---LFKRFTVEVKMSI 401

Query: 174 ADKIIPKI-KAAQFDIVNHM---RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRL 229
            DK + K  +A   D V HM     +TI   +  AIQTGNW+++RF M R GVT VLSRL
Sbjct: 402 -DKFLKKNNRAVPLDAV-HMISNHANTIGIGINRAIQTGNWSVKRFNMNRAGVTHVLSRL 459

Query: 230 SYISGLGMMTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHIT 289
           SYI+ LGMMTRI+SQFEKTRKVSGPR+LQ SQWGMLC SDTPEGEACGLVKNLALMTHIT
Sbjct: 460 SYIAALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCTSDTPEGEACGLVKNLALMTHIT 519

Query: 290 TENDEKNMLKIMYNIG--IEHIAMFNGEELSSPGVYLVFVNGILAGITCHHKEVCK 343
           T  +E  + + +  I   +E I  F+G  +   G Y++ VNG    +T + K   +
Sbjct: 520 TNVEEGPVKETILTIDKEVEAIEKFSGSMMHREGSYVIHVNGTPFALTRNPKRFAQ 575



 Score =  165 bits (418), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 84/147 (57%), Positives = 101/147 (68%), Gaps = 16/147 (10%)

Query: 677 RPTFLNMHQFLGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTL 736
           +P  L + Q LG   FDDFL +G +EYLDVNE ND+ I + E  +    TTHLEI PFT+
Sbjct: 625 KPEHLRLLQ-LGKVTFDDFLRQGVVEYLDVNEENDALITIYEDQVTQS-TTHLEIEPFTI 682

Query: 737 LGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMY 796
           LG  AG              L+P+PHHNQ+PRNTYQCAMGKQA+G I YNQ NRIDTL+Y
Sbjct: 683 LGAVAG--------------LIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLY 728

Query: 797 NLVYAQRPMVESKTIRITNFHKLPAGK 823
            LVY QRPMV SKTI++  + KLPAG+
Sbjct: 729 TLVYPQRPMVISKTIQLIGYDKLPAGQ 755



 Score = 98.2 bits (243), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/142 (36%), Positives = 86/142 (60%), Gaps = 3/142 (2%)

Query: 395 MPIMLQSSKCVLRNKTEYTSSSRRASTSSVTMHSQRTSPLLSCKKLRQKRFQ---TYKKT 451
           M IM   +    R + E+  +   A+ + +    Q    + +  K+  +R Q     ++ 
Sbjct: 257 MEIMELVAGSDGRYQDEFLVNFDEATKAGIFTQHQALEYIGARVKMGSRRGQFGPQVRRN 316

Query: 452 PVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLE 511
            V++  D L++  IAH+P+  + F  KA+Y+A+M R++++A  +P ++DDRD+ GNKRLE
Sbjct: 317 HVEEGLDALANLVIAHVPIEELDFYPKAIYVAMMTRKVLMAAHNPKLVDDRDFVGNKRLE 376

Query: 512 LAGSLLSLMFEDVFKRFNSELK 533
           LAG LLSL+FED+FKRF  E+K
Sbjct: 377 LAGQLLSLLFEDLFKRFTVEVK 398



 Score = 78.2 bits (191), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 34/54 (62%), Positives = 43/54 (79%)

Query: 357 TPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
           TP ECRLRD+TY+API VDI+Y R  QR+VR ++ +GRMP+ML+SSKC L   T
Sbjct: 105 TPMECRLRDMTYAAPILVDIQYIRDKQRIVRKNVPLGRMPVMLKSSKCRLGGAT 158



 Score = 68.6 bits (166), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 45/58 (77%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           DK++L+ +FLK KGLVK HIDS+++F+  EIK +++AN  I SDVD  F+L++ DI V
Sbjct: 30  DKFQLLPAFLKVKGLVKQHIDSYNFFVEQEIKDIVRANRTIRSDVDSNFWLEFTDIRV 87


>gi|330934625|ref|XP_003304626.1| hypothetical protein PTT_17275 [Pyrenophora teres f. teres 0-1]
 gi|311318641|gb|EFQ87258.1| hypothetical protein PTT_17275 [Pyrenophora teres f. teres 0-1]
          Length = 1214

 Score =  323 bits (828), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 157/261 (60%), Positives = 188/261 (72%), Gaps = 7/261 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ NRIDTL+Y +VY Q+PMV+++TI +T 
Sbjct: 759  GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLYLMVYPQQPMVKTRTIELTK 818

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+AVMSYSGYDIEDALI+NKAS DRGFGRC V +     LK Y N T DR
Sbjct: 819  YDKLPAGQNATVAVMSYSGYDIEDALILNKASCDRGFGRCQVMKKHVTQLKTYANGTSDR 878

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKE 1092
            I    L+ D +     H+A+ +DGI   G +I      + KS+P   +     AT  YK+
Sbjct: 879  INAGALDTDNKS----HQAIGKDGIAQVGARIEAGDAYLLKSIP---LDTAGPATNTYKD 931

Query: 1093 VPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQ 1152
             P  YK    SY++K  V+ N     LIK+L RQTRRPE+GDKFSSRHGQKG  GLIV+Q
Sbjct: 932  KPEKYKNPDFSYIDKACVTENEAGVTLIKLLFRQTRRPELGDKFSSRHGQKGTTGLIVQQ 991

Query: 1153 EDMPFNESGICPDIIMNPHGL 1173
            EDMPFN+ GICPDIIMNPHG 
Sbjct: 992  EDMPFNDQGICPDIIMNPHGF 1012



 Score =  265 bits (676), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 120/191 (62%), Positives = 150/191 (78%)

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
            YK+ P  YK    SY++K  V+ N     LIK+L RQTRRPE+GDKFSSRHGQKG  GLI
Sbjct: 929  YKDKPEKYKNPDFSYIDKACVTENEAGVTLIKLLFRQTRRPELGDKFSSRHGQKGTTGLI 988

Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
            V+QEDMPFN+ GICPDIIMNPHG+PSRMTVGK++ELL+GKAG++ G  + GTAFGG+ + 
Sbjct: 989  VQQEDMPFNDQGICPDIIMNPHGFPSRMTVGKMMELLSGKAGVLNGTLEYGTAFGGSTVE 1048

Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
            D+ + L+  G++Y GKD   SGITGEA + Y + GP+YYQKLKHMVQDK+H+R+RGPR +
Sbjct: 1049 DMSKILVDKGFSYTGKDYLTSGITGEAHQFYTFFGPIYYQKLKHMVQDKMHSRARGPRAI 1108

Query: 1362 LTRQPTGRRWK 1372
            LTRQPT  R +
Sbjct: 1109 LTRQPTEGRAR 1119



 Score =  199 bits (507), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 99/169 (58%), Positives = 129/169 (76%), Gaps = 3/169 (1%)

Query: 175 DKIIPK-IKAAQFDIVNH--MRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSY 231
           DK++ K I+A +FD  +H  + ++ IT  +  AI TGNW+++RFKM+R GVT VLSRLSY
Sbjct: 475 DKVLKKPIRAQEFDAFSHFSVHKNHITMGVERAIATGNWSLKRFKMDRAGVTHVLSRLSY 534

Query: 232 ISGLGMMTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTE 291
           I+ LGMMTRI+SQFEKTRKVSGPR+LQ SQ+GMLC SDTPEGEACGLVKNLALMTHITTE
Sbjct: 535 IAALGMMTRISSQFEKTRKVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTE 594

Query: 292 NDEKNMLKIMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAGITCHHKE 340
           +D+  + KI++ +G + I    GE++ + GVY + +NG    IT   K+
Sbjct: 595 DDDDPVRKIVFMLGAQDICSLTGEDIHAEGVYSLCLNGTPIAITDRPKQ 643



 Score =  161 bits (408), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 77/132 (58%), Positives = 96/132 (72%), Gaps = 15/132 (11%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKR 751
           F+DFL  G +EYLD NE ND++IA+ E+ I    TTHLEI PFT+LG  AG         
Sbjct: 710 FEDFLTRGLVEYLDTNEENDTNIALKETDINQH-TTHLEIEPFTILGAVAG--------- 759

Query: 752 FHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTI 811
                L+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ NRIDTL+Y +VY Q+PMV+++TI
Sbjct: 760 -----LIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLYLMVYPQQPMVKTRTI 814

Query: 812 RITNFHKLPAGK 823
            +T + KLPAG+
Sbjct: 815 ELTKYDKLPAGQ 826



 Score = 94.0 bits (232), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 40/79 (50%), Positives = 61/79 (77%)

Query: 455 DARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAG 514
           +A + LS+  + H+PV    ++ KA+Y+A+M RR+++A+ +P ++DDRDY GNKRLEL+G
Sbjct: 393 EAIECLSNVVLPHVPVEGTNYRPKALYVALMARRVLMAMQNPKLVDDRDYVGNKRLELSG 452

Query: 515 SLLSLMFEDVFKRFNSELK 533
            +LSL+FED FKRFN + K
Sbjct: 453 QMLSLLFEDHFKRFNHDFK 471



 Score = 85.1 bits (209), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 39/66 (59%), Positives = 53/66 (80%), Gaps = 1/66 (1%)

Query: 347 EESFNYTRQT-TPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCV 405
           E+   + R T TP+ECRLRD+TY+API VDI YTRG+ +V R+ + IGRMPIML+S+KCV
Sbjct: 171 EDDLEHHRSTITPNECRLRDMTYAAPIVVDIIYTRGNAKVKRTGIKIGRMPIMLKSNKCV 230

Query: 406 LRNKTE 411
           L +K++
Sbjct: 231 LADKSD 236



 Score = 78.6 bits (192), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 33/59 (55%), Positives = 47/59 (79%)

Query: 113 RDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           RDKW L+ +FLK KGLVK H+DS+++F++VE+KK+++AN  + SD DP F L+Y DI V
Sbjct: 105 RDKWNLLPAFLKTKGLVKQHVDSYNHFVDVELKKIIKANRFVRSDFDPKFLLEYTDIRV 163


>gi|256081821|ref|XP_002577166.1| DNA-directed RNA polymerase III subunit [Schistosoma mansoni]
 gi|360043958|emb|CCD81504.1| putative dna-directed RNA polymerase III subunit [Schistosoma
            mansoni]
          Length = 1128

 Score =  323 bits (828), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 152/283 (53%), Positives = 206/283 (72%), Gaps = 2/283 (0%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYP HNQ+PRNTYQCAMGKQA+G +  NQQ R DTL   +VY Q+P+V+SKTI++ +
Sbjct: 658  GLIPYPDHNQSPRNTYQCAMGKQAIGTVALNQQIRFDTLQCQMVYPQKPLVQSKTIQMMH 717

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F +LPAGQNA +A+MSYSGYD+EDAL++N+AS+DRGF R  VYR S   LK + N  +DR
Sbjct: 718  FDELPAGQNAVVAIMSYSGYDVEDALVINQASIDRGFARACVYRRSGVHLKMHENAVYDR 777

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAI--SMATPEY 1090
            ++GP +E +T         L  DG+   G  + +RQ+L+NK MP +S SA+  +  + ++
Sbjct: 778  LMGPSIERETGVLRRGDEVLQADGVAYIGACVNDRQILINKEMPVVSSSAVLDNAGSLKF 837

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            K  PV YKG  PSY+EKV+ S++  +  ++K+LLRQTRRPE+GDKFSSRHGQKGV+GLIV
Sbjct: 838  KRCPVDYKGIEPSYVEKVMFSTSEGNQAVVKILLRQTRRPEVGDKFSSRHGQKGVVGLIV 897

Query: 1151 EQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSV 1193
             QED+PF+ +G+ PDIIMNPHG      + +  EV  S  G++
Sbjct: 898  RQEDLPFSTNGLTPDIIMNPHGFPSRMTVGKLLEVLGSKAGAI 940



 Score =  265 bits (676), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 121/190 (63%), Positives = 152/190 (80%)

Query: 1181 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1240
            ++K  PV YKG  PSY+EKV+ S++  +  ++K+LLRQTRRPE+GDKFSSRHGQKGV+GL
Sbjct: 836  KFKRCPVDYKGIEPSYVEKVMFSTSEGNQAVVKILLRQTRRPEVGDKFSSRHGQKGVVGL 895

Query: 1241 IVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKL 1300
            IV QED+PF+ +G+ PDIIMNPHG+PSRMTVGKL+E+L  KAG +EG  ++G+AF G   
Sbjct: 896  IVRQEDLPFSTNGLTPDIIMNPHGFPSRMTVGKLLEVLGSKAGAIEGKIRDGSAFSGDPA 955

Query: 1301 VDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRV 1360
              + + LI HGY+Y GK+I YSG+TG  LEA+IY GPVYYQ+LKHMV DK+HARSRGP  
Sbjct: 956  EVLSQVLIDHGYHYLGKEILYSGVTGAPLEAFIYFGPVYYQRLKHMVMDKVHARSRGPVT 1015

Query: 1361 VLTRQPTGRR 1370
             LTRQPT  R
Sbjct: 1016 ALTRQPTEGR 1025



 Score =  178 bits (451), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 95/212 (44%), Positives = 133/212 (62%), Gaps = 14/212 (6%)

Query: 134 DSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVNHMR 193
           D  D++ N  I+      A ++ DV   F     D+ + ++ KI  K +   FDI  H++
Sbjct: 342 DDRDFYGNKRIELAGSLLALLFEDVFKTFNE---DLWLTVS-KIDTKRRCTPFDISRHIK 397

Query: 194 QDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVSG 253
              IT  L  AI +GNW I+RF+M R GVTQV+SRLSY++ LG MTR+ SQFEKTRKVSG
Sbjct: 398 TWMITEQLNRAISSGNWIIKRFRMMRHGVTQVVSRLSYVAALGHMTRMTSQFEKTRKVSG 457

Query: 254 PRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIM---YNIGIEHIA 310
           PRS+  SQWG++CPSDTPEGEACGLVKN+ALM H+T E D+ ++++++   Y   +  + 
Sbjct: 458 PRSIHASQWGLICPSDTPEGEACGLVKNVALMCHVTVEVDDAHLIELISNYYTFPLYQMR 517

Query: 311 MFNGEELSSPGVYLVFVNGILAGITCHHKEVC 342
               E       Y+++VNG   G T H  ++C
Sbjct: 518 YAKNE-------YVIYVNGKPIGFTQHPGKLC 542



 Score =  140 bits (352), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 70/133 (52%), Positives = 91/133 (68%), Gaps = 15/133 (11%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGV-TTHLEIAPFTLLGVCAGIELLQYNK 750
           +DD L +G +EYLDVNE ND  +A+ ES +  G   TH+EI P T+LGV AG        
Sbjct: 607 WDDLLKKGLVEYLDVNELNDCLVAMDESCLTDGNHYTHMEIDPATILGVVAG-------- 658

Query: 751 RFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKT 810
                 L+PYP HNQ+PRNTYQCAMGKQA+G +  NQQ R DTL   +VY Q+P+V+SKT
Sbjct: 659 ------LIPYPDHNQSPRNTYQCAMGKQAIGTVALNQQIRFDTLQCQMVYPQKPLVQSKT 712

Query: 811 IRITNFHKLPAGK 823
           I++ +F +LPAG+
Sbjct: 713 IQMMHFDELPAGQ 725



 Score = 79.0 bits (193), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/74 (50%), Positives = 50/74 (67%)

Query: 459 FLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGSLLS 518
           FL    I H+ +  + F  +A +L  M+R ++LA       DDRD+YGNKR+ELAGSLL+
Sbjct: 301 FLRDIIITHVEMEKLNFAPRAFFLGQMVRYLILANEKRIPPDDRDFYGNKRIELAGSLLA 360

Query: 519 LMFEDVFKRFNSEL 532
           L+FEDVFK FN +L
Sbjct: 361 LLFEDVFKTFNEDL 374



 Score = 70.5 bits (171), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 31/67 (46%), Positives = 45/67 (67%)

Query: 344 PEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSK 403
           P + +      + TPH+CRLRDLTY+  I VD+ + R ++ V +  ++IGRMPIML+SS 
Sbjct: 62  PTVNDGGVVASRVTPHDCRLRDLTYAGEILVDVTFVRQNEVVSKKGVLIGRMPIMLKSSI 121

Query: 404 CVLRNKT 410
           CVL  K+
Sbjct: 122 CVLNGKS 128



 Score = 54.3 bits (129), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/60 (46%), Positives = 43/60 (71%), Gaps = 1/60 (1%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           ++ K  LV SFL  KGLVK HIDSF++FI  EIK +++AN+ + S  +  ++L+Y DI++
Sbjct: 1   MKQKHYLVPSFLASKGLVKLHIDSFNHFIQTEIKNIVRANSRV-SVPEANWWLEYNDIYI 59


>gi|380493500|emb|CCF33834.1| DNA-directed RNA polymerase III subunit RPC2 [Colletotrichum
            higginsianum]
          Length = 1151

 Score =  323 bits (827), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 148/264 (56%), Positives = 198/264 (75%), Gaps = 5/264 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+P+PHHNQ+PRNTYQCAMGKQA+G I YNQ NRIDTL+Y LVY QRPMV SKTI++ N
Sbjct: 686  GLIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLYTLVYPQRPMVISKTIQLVN 745

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+ VMSYSGYDIEDAL++NKAS DRGFGRC V+R     L++YPN   +R
Sbjct: 746  YDKLPAGQNATVIVMSYSGYDIEDALVLNKASCDRGFGRCQVFRKYTAELQKYPNGRRER 805

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPE 1089
            I  P+ + + R    +H ALD DG+   G ++   +V++ K  P  + S    +     E
Sbjct: 806  IGDPVNDENGR--TTKHEALDDDGLAIVGYKVNSGEVMIKKETPLDTGSTGIGMDRGPSE 863

Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
            +++  +SY+ + P+Y++KV+VS    +  ++K+  RQTRRPE+GDKFSSRHGQKGV+G+I
Sbjct: 864  FRDSSISYRIADPAYIDKVMVSHTERETMVVKVQTRQTRRPELGDKFSSRHGQKGVVGII 923

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
            V+QED+PF+++G+ PDIIMNPHG 
Sbjct: 924  VDQEDLPFSDTGLVPDIIMNPHGF 947



 Score =  255 bits (652), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 116/201 (57%), Positives = 160/201 (79%), Gaps = 3/201 (1%)

Query: 1175 GCDR-ITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
            G DR  +E+++  +SY+ + P+Y++KV+VS    +  ++K+  RQTRRPE+GDKFSSRHG
Sbjct: 856  GMDRGPSEFRDSSISYRIADPAYIDKVMVSHTERETMVVKVQTRQTRRPELGDKFSSRHG 915

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEG--NYKE 1291
            QKGV+G+IV+QED+PF+++G+ PDIIMNPHG+PSRMTVGKL+E L GKA +++G  +Y  
Sbjct: 916  QKGVVGIIVDQEDLPFSDTGLVPDIIMNPHGFPSRMTVGKLLECLTGKASVLDGRKDYGF 975

Query: 1292 GTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKI 1351
            G AF    L  +   L+ HG++++GKD F SGITGE LEAYI++GP+YYQ+LKHMVQDK+
Sbjct: 976  GDAFRSHPLEQMSAALVDHGFSWEGKDYFTSGITGEPLEAYIFNGPIYYQRLKHMVQDKM 1035

Query: 1352 HARSRGPRVVLTRQPTGRRWK 1372
            H+RSRGPR +LTRQPT  R +
Sbjct: 1036 HSRSRGPRAILTRQPTEGRSR 1056



 Score =  184 bits (468), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 96/170 (56%), Positives = 120/170 (70%), Gaps = 5/170 (2%)

Query: 175 DKIIPKI-KAAQFDIVNHMRQ--DTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSY 231
           DK++ K  +A   D VN +    + I   +  AIQTGNWT++RF M R GVT VLSRLSY
Sbjct: 400 DKVLKKDNRAVPLDAVNMISNHANMIGQGINRAIQTGNWTVKRFNMNRAGVTHVLSRLSY 459

Query: 232 ISGLGMMTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTE 291
           IS LGMMTRI+SQFEKTRKVSGPR+LQ SQWGMLC SDTPEGEACGLVKNLALMTHITT 
Sbjct: 460 ISALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCTSDTPEGEACGLVKNLALMTHITTN 519

Query: 292 NDEKNMLKIMYNI--GIEHIAMFNGEELSSPGVYLVFVNGILAGITCHHK 339
            +E  + + ++ +  G+E I  F+G E+     Y++ +NG    +T + K
Sbjct: 520 VEEAPVKRWVFTLDAGVEPIRNFSGGEMHRETSYVIHINGTPFALTRYPK 569



 Score =  170 bits (430), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 82/137 (59%), Positives = 99/137 (72%), Gaps = 15/137 (10%)

Query: 687 LGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELL 746
           LG   FDDFL  G +EYLDVNE ND+ +A+ E  + P +TTH+EI PFT+LG  AG    
Sbjct: 632 LGKATFDDFLTHGIVEYLDVNEENDTLVALYEKDVTP-LTTHMEIEPFTVLGAVAG---- 686

Query: 747 QYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMV 806
                     L+P+PHHNQ+PRNTYQCAMGKQA+G I YNQ NRIDTL+Y LVY QRPMV
Sbjct: 687 ----------LIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLYTLVYPQRPMV 736

Query: 807 ESKTIRITNFHKLPAGK 823
            SKTI++ N+ KLPAG+
Sbjct: 737 ISKTIQLVNYDKLPAGQ 753



 Score = 96.7 bits (239), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 43/87 (49%), Positives = 65/87 (74%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           ++  V++A D L++  IAH+P+  + F  KA+Y+A M RR+++A  DP ++DDRD+ GNK
Sbjct: 312 RRNHVEEALDALANLIIAHVPIEGLDFYPKAVYVAFMTRRVLMAQQDPSLVDDRDFVGNK 371

Query: 509 RLELAGSLLSLMFEDVFKRFNSELKET 535
           RLELAG LLSL+FED+FK+F   +K +
Sbjct: 372 RLELAGQLLSLLFEDLFKQFCGNVKSS 398



 Score = 68.9 bits (167), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/61 (50%), Positives = 43/61 (70%), Gaps = 3/61 (4%)

Query: 349 SFNYTR---QTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCV 405
            FN  R   + +P ECRLRD+TY+API VDI Y R   ++VR ++ +GR+P+ML+SS C 
Sbjct: 92  DFNDIRAQNEVSPMECRLRDMTYAAPIMVDIAYIRDKSKIVRKNVPLGRLPVMLKSSICR 151

Query: 406 L 406
           L
Sbjct: 152 L 152



 Score = 65.9 bits (159), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/58 (51%), Positives = 46/58 (79%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           DK++L+ +FLK KGLVK HIDS+++F+  EIK++++AN  I SDV+  F+L++ DI V
Sbjct: 28  DKFQLLPAFLKVKGLVKQHIDSYNFFVENEIKEIVRANRIIRSDVNSSFWLEFTDIRV 85


>gi|409075839|gb|EKM76215.1| hypothetical protein AGABI1DRAFT_122788 [Agaricus bisporus var.
            burnettii JB137-S8]
          Length = 1142

 Score =  323 bits (827), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 154/265 (58%), Positives = 196/265 (73%), Gaps = 6/265 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G IGYNQ NRIDTL+Y  VY Q+PMV++KTI +  
Sbjct: 682  GLIPYPHHNQSPRNTYQCAMGKQAIGAIGYNQFNRIDTLLYLSVYPQQPMVKTKTIELIG 741

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+AVMSYSGYDIEDALI+NKASLDRG+GRC V R +  ++++YPN T+DR
Sbjct: 742  YDKLPAGQNATVAVMSYSGYDIEDALILNKASLDRGYGRCQVLRKNATLIRKYPNGTYDR 801

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPT----ISVSAISMATP 1088
            +    ++ +      R+  +  DG+   GE++    + VNK  PT     S +  + + P
Sbjct: 802  LADAPVDENGMT-AKRYDIIQPDGLAGVGERVDPGDIYVNKQSPTNASDNSFTGQAASVP 860

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
             YK  P++YK  V  Y++KV+V+    +  LIK+L+RQTRRPE+GDKFSSRHGQKGV GL
Sbjct: 861  -YKNTPLTYKSPVAGYIDKVMVTDTENEQTLIKVLIRQTRRPELGDKFSSRHGQKGVCGL 919

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            IV QEDMPFN+ GI PD IMNPHG 
Sbjct: 920  IVNQEDMPFNDQGINPDTIMNPHGF 944



 Score =  276 bits (705), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 126/189 (66%), Positives = 153/189 (80%)

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
            YK  P++YK  V  Y++KV+V+    +  LIK+L+RQTRRPE+GDKFSSRHGQKGV GLI
Sbjct: 861  YKNTPLTYKSPVAGYIDKVMVTDTENEQTLIKVLIRQTRRPELGDKFSSRHGQKGVCGLI 920

Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
            V QEDMPFN+ GI PD IMNPHG+PSRMTVGK+IELLAGKAG++ G  + GTAFGG+K+ 
Sbjct: 921  VNQEDMPFNDQGINPDTIMNPHGFPSRMTVGKMIELLAGKAGVLTGKLQYGTAFGGSKVE 980

Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
            D+   LI +G++Y GKD+  SGITGE LEAY+Y GP+YYQKLKHMV DK+HAR+RGPR  
Sbjct: 981  DMSRILIENGFSYAGKDMLTSGITGEPLEAYVYFGPIYYQKLKHMVMDKMHARARGPRAT 1040

Query: 1362 LTRQPTGRR 1370
            LTRQPT  R
Sbjct: 1041 LTRQPTEGR 1049



 Score =  205 bits (522), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 107/208 (51%), Positives = 143/208 (68%), Gaps = 7/208 (3%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPK-IKAAQFDIVNH 191
           +D  DY  N  ++   Q  A ++ D   LF     ++   I DK++ K  +  +FD  N 
Sbjct: 360 VDDRDYVGNKRLELAGQLLALLFED---LFKTYNSNLKSAI-DKVLKKPSRTTEFDAYNT 415

Query: 192 MR--QDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
           M+   D +T     AI TGNW+++RFKMER GVT VLSRLS+IS LGMMTRI+SQFEKTR
Sbjct: 416 MQFQGDHLTAGFVRAISTGNWSLKRFKMERAGVTHVLSRLSFISALGMMTRISSQFEKTR 475

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHI 309
           KVSGPR+LQ SQWG+LCPSDTPEGEACGLVKNLALMTHITT+ +E+ ++++ + +G+E I
Sbjct: 476 KVSGPRALQPSQWGVLCPSDTPEGEACGLVKNLALMTHITTDVEEEPIIQLAFMLGVEDI 535

Query: 310 AMFNGEELSSPGVYLVFVNGILAGITCH 337
            +  G E+  P  ++V VNG + G+  H
Sbjct: 536 RLATGTEIYGPNTFVVNVNGTIIGLIRH 563



 Score =  170 bits (430), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 84/136 (61%), Positives = 99/136 (72%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G   FDDFL +G +EYLDVNE ND++IA+ ES I P  TTHLEI PFTLLG  AG     
Sbjct: 629 GTATFDDFLRKGVVEYLDVNEENDTYIALYESDITPH-TTHLEIEPFTLLGAVAG----- 682

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQA+G IGYNQ NRIDTL+Y  VY Q+PMV+
Sbjct: 683 ---------LIPYPHHNQSPRNTYQCAMGKQAIGAIGYNQFNRIDTLLYLSVYPQQPMVK 733

Query: 808 SKTIRITNFHKLPAGK 823
           +KTI +  + KLPAG+
Sbjct: 734 TKTIELIGYDKLPAGQ 749



 Score = 96.7 bits (239), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 41/80 (51%), Positives = 64/80 (80%)

Query: 454 DDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELA 513
           ++A + L++  +AH+PV  +  + KA+++A M RR+++A++D +M+DDRDY GNKRLELA
Sbjct: 315 EEALEALATIVLAHVPVNGLDLRPKAIFVATMTRRVLMAMNDENMVDDRDYVGNKRLELA 374

Query: 514 GSLLSLMFEDVFKRFNSELK 533
           G LL+L+FED+FK +NS LK
Sbjct: 375 GQLLALLFEDLFKTYNSNLK 394



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 38/65 (58%), Positives = 53/65 (81%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           + DKW L+ +FLK KGLVK HIDSF+YF++V++K +++AN  I SDVDP F+LKY+DI+V
Sbjct: 30  VEDKWLLLPAFLKVKGLVKQHIDSFNYFVDVDLKNIVKANNKITSDVDPRFWLKYVDINV 89

Query: 172 GIADK 176
           G  D+
Sbjct: 90  GFPDR 94



 Score = 81.3 bits (199), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 38/68 (55%), Positives = 51/68 (75%), Gaps = 1/68 (1%)

Query: 344 PEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSK 403
           P+  E     ++ TPHECRLRD TYSAPI V I+YTRG + +V+ ++ IGR+PIML+S+K
Sbjct: 92  PDRNEMETVEKKVTPHECRLRDTTYSAPIIVTIQYTRG-KNIVQRNVNIGRLPIMLRSNK 150

Query: 404 CVLRNKTE 411
           CVL  +TE
Sbjct: 151 CVLTGRTE 158


>gi|310798473|gb|EFQ33366.1| RNA polymerase Rpb2 [Glomerella graminicola M1.001]
          Length = 1151

 Score =  323 bits (827), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 148/264 (56%), Positives = 198/264 (75%), Gaps = 5/264 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+P+PHHNQ+PRNTYQCAMGKQA+G I YNQ NRIDTL+Y LVY QRPMV SKTI++ N
Sbjct: 686  GLIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLYTLVYPQRPMVISKTIQLVN 745

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+ VMSYSGYDIEDAL++NKAS DRGFGRC V+R     L++YPN   +R
Sbjct: 746  YDKLPAGQNATVIVMSYSGYDIEDALVLNKASCDRGFGRCQVFRKYTAELQKYPNGRRER 805

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPE 1089
            I  P+ + + R    +H ALD DG+   G ++   +V++ K  P  + S    +     E
Sbjct: 806  IGDPVNDENGR--TTKHEALDDDGLAIVGYKVNSGEVMIKKETPLDTGSTGIGMDRGPSE 863

Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
            +++  +SY+ + P+Y++KV+VS    +  ++K+  RQTRRPE+GDKFSSRHGQKGV+G+I
Sbjct: 864  FRDSSISYRIADPAYIDKVMVSHTERETMVVKVQTRQTRRPELGDKFSSRHGQKGVVGII 923

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
            V+QED+PF+++G+ PDIIMNPHG 
Sbjct: 924  VDQEDLPFSDTGLVPDIIMNPHGF 947



 Score =  255 bits (652), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 116/201 (57%), Positives = 160/201 (79%), Gaps = 3/201 (1%)

Query: 1175 GCDR-ITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
            G DR  +E+++  +SY+ + P+Y++KV+VS    +  ++K+  RQTRRPE+GDKFSSRHG
Sbjct: 856  GMDRGPSEFRDSSISYRIADPAYIDKVMVSHTERETMVVKVQTRQTRRPELGDKFSSRHG 915

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEG--NYKE 1291
            QKGV+G+IV+QED+PF+++G+ PDIIMNPHG+PSRMTVGKL+E L GKA +++G  +Y  
Sbjct: 916  QKGVVGIIVDQEDLPFSDTGLVPDIIMNPHGFPSRMTVGKLLECLTGKASVLDGRKDYGF 975

Query: 1292 GTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKI 1351
            G AF    L  +   L+ HG++++GKD F SGITGE LEAYI++GP+YYQ+LKHMVQDK+
Sbjct: 976  GDAFRSHPLEQMSAALVDHGFSWEGKDYFTSGITGEPLEAYIFNGPIYYQRLKHMVQDKM 1035

Query: 1352 HARSRGPRVVLTRQPTGRRWK 1372
            H+RSRGPR +LTRQPT  R +
Sbjct: 1036 HSRSRGPRAILTRQPTEGRSR 1056



 Score =  184 bits (468), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 96/170 (56%), Positives = 120/170 (70%), Gaps = 5/170 (2%)

Query: 175 DKIIPKI-KAAQFDIVNHMRQ--DTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSY 231
           DK++ K  +A   D VN +    + I   +  AIQTGNWT++RF M R GVT VLSRLSY
Sbjct: 400 DKVLKKDNRAVPLDAVNMISNHANMIGQGINRAIQTGNWTVKRFNMNRAGVTHVLSRLSY 459

Query: 232 ISGLGMMTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTE 291
           IS LGMMTRI+SQFEKTRKVSGPR+LQ SQWGMLC SDTPEGEACGLVKNLALMTHITT 
Sbjct: 460 ISALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCTSDTPEGEACGLVKNLALMTHITTN 519

Query: 292 NDEKNMLKIMYNI--GIEHIAMFNGEELSSPGVYLVFVNGILAGITCHHK 339
            +E  + + ++ +  G+E I  F+G E+     Y++ +NG    +T + K
Sbjct: 520 VEEAPVKRWVFTLDAGVEPIRNFSGGEMHRETSYVIHINGTPFALTRYPK 569



 Score =  170 bits (430), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 82/137 (59%), Positives = 99/137 (72%), Gaps = 15/137 (10%)

Query: 687 LGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELL 746
           LG   FDDFL  G +EYLDVNE ND+ +A+ E  + P +TTH+EI PFT+LG  AG    
Sbjct: 632 LGRATFDDFLTHGIVEYLDVNEENDTLVALYEKDVTP-LTTHMEIEPFTVLGAVAG---- 686

Query: 747 QYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMV 806
                     L+P+PHHNQ+PRNTYQCAMGKQA+G I YNQ NRIDTL+Y LVY QRPMV
Sbjct: 687 ----------LIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLYTLVYPQRPMV 736

Query: 807 ESKTIRITNFHKLPAGK 823
            SKTI++ N+ KLPAG+
Sbjct: 737 ISKTIQLVNYDKLPAGQ 753



 Score = 97.4 bits (241), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 43/87 (49%), Positives = 66/87 (75%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           ++  V++A D L++  IAH+P+  + F  KA+Y+A M RR+++A +DP ++DDRD+ GNK
Sbjct: 312 RRNHVEEALDALANLIIAHVPIEGLDFYPKAIYVAFMTRRVLMAQNDPSLVDDRDFVGNK 371

Query: 509 RLELAGSLLSLMFEDVFKRFNSELKET 535
           RLELAG LLSL+FED+FK+F   +K +
Sbjct: 372 RLELAGQLLSLLFEDLFKQFCGNVKSS 398



 Score = 70.1 bits (170), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 32/61 (52%), Positives = 43/61 (70%), Gaps = 3/61 (4%)

Query: 349 SFNYTR---QTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCV 405
            FN  R   + TP ECRLRD+TY+API VDI Y R   ++VR ++ +GR+P+ML+SS C 
Sbjct: 92  DFNDIRAQNEVTPMECRLRDMTYAAPIMVDIAYIRDKSKIVRKNVPLGRLPVMLKSSICR 151

Query: 406 L 406
           L
Sbjct: 152 L 152



 Score = 65.9 bits (159), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/58 (51%), Positives = 46/58 (79%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           DK++L+ +FLK KGLVK HIDS+++F+  EIK++++AN  I SDV+  F+L++ DI V
Sbjct: 28  DKFQLLPAFLKVKGLVKQHIDSYNFFVENEIKEIVRANRIIRSDVNSSFWLEFTDIRV 85


>gi|346972359|gb|EGY15811.1| DNA-directed RNA polymerase III subunit RPC2 [Verticillium dahliae
            VdLs.17]
          Length = 1160

 Score =  323 bits (827), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 151/267 (56%), Positives = 197/267 (73%), Gaps = 6/267 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+P+PHHNQ+PRNTYQCAMGKQA+G I YNQ NRIDTL+Y LVY QRPMV SKTI++ +
Sbjct: 689  GLIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLYTLVYPQRPMVISKTIQLIH 748

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+ VMSYSGYDIEDAL++NKAS DRGFGRC V+R     L++YPN   +R
Sbjct: 749  YDKLPAGQNATVVVMSYSGYDIEDALVLNKASCDRGFGRCQVFRKYSAELQKYPNGKRER 808

Query: 1033 ILGPL---LEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMA 1086
            I  P    +E   R+ + +H ALD DG+   G Q+   + +V K  P  + S        
Sbjct: 809  IGDPQYEEMEGKPRRRIAKHAALDPDGLAMVGGQVRAGEAMVKKETPLDTGSTGIGNDRG 868

Query: 1087 TPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVI 1146
              E+++  +SY+   P+Y++KV++S + +D  +IK+  RQTRRPE+GDKFSSRHGQKGV+
Sbjct: 869  PSEFRDSSISYRIPDPAYIDKVMISQSEKDNMVIKVQTRQTRRPELGDKFSSRHGQKGVV 928

Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G+IVEQED+PF++ G+ PDIIMNPHG 
Sbjct: 929  GIIVEQEDLPFSDKGLVPDIIMNPHGF 955



 Score =  258 bits (660), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 118/199 (59%), Positives = 160/199 (80%), Gaps = 3/199 (1%)

Query: 1175 GCDR-ITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
            G DR  +E+++  +SY+   P+Y++KV++S + +D  +IK+  RQTRRPE+GDKFSSRHG
Sbjct: 864  GNDRGPSEFRDSSISYRIPDPAYIDKVMISQSEKDNMVIKVQTRQTRRPELGDKFSSRHG 923

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEG--NYKE 1291
            QKGV+G+IVEQED+PF++ G+ PDIIMNPHG+PSRMTVGKL+E L GKA +++G  +Y  
Sbjct: 924  QKGVVGIIVEQEDLPFSDKGLVPDIIMNPHGFPSRMTVGKLLECLTGKASVLDGRPDYGF 983

Query: 1292 GTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKI 1351
            G AF    L  + E L+ HG++++GKD F SGITGE LEAYI++GP+YYQ+LKHMVQDK+
Sbjct: 984  GDAFRSHPLKQMSEALVDHGFSWEGKDYFTSGITGEPLEAYIFNGPIYYQRLKHMVQDKM 1043

Query: 1352 HARSRGPRVVLTRQPTGRR 1370
            H+R+RGPR +LTRQPT  R
Sbjct: 1044 HSRARGPRAILTRQPTEGR 1062



 Score =  190 bits (483), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 104/208 (50%), Positives = 136/208 (65%), Gaps = 9/208 (4%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKI-KAAQFDIVNH 191
           +D  D+  N  ++   Q  + ++ D   LF     D+   I DK++ K  +A   D V  
Sbjct: 365 VDDRDFVGNKRLELAGQLLSLLFED---LFKKFCGDVKASI-DKVLKKDNRAVAMDAVTM 420

Query: 192 MRQ--DTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
           +    + I   +  AIQTGNWT++RF M R GVT VLSRLSYIS LGMMTRI+SQFEKTR
Sbjct: 421 ISNHANNIGQGINRAIQTGNWTVKRFNMNRAGVTHVLSRLSYISALGMMTRISSQFEKTR 480

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNI--GIE 307
           KVSGPR+LQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT  +E+ + + ++ +   +E
Sbjct: 481 KVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTNAEEEPVKRWVFTVDDNVE 540

Query: 308 HIAMFNGEELSSPGVYLVFVNGILAGIT 335
            I  F+G E+   G Y++ +NG    +T
Sbjct: 541 PIRNFSGSEMHREGSYIIHINGTPFALT 568



 Score =  164 bits (416), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 80/137 (58%), Positives = 98/137 (71%), Gaps = 15/137 (10%)

Query: 687 LGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELL 746
           LG   FDDFL  G +EYLDVNE ND+ +A+ E+ +    TTH+EI PFT+LG  AG    
Sbjct: 635 LGKATFDDFLTNGVVEYLDVNEENDTLVALYETDVNQS-TTHMEIEPFTILGAVAG---- 689

Query: 747 QYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMV 806
                     L+P+PHHNQ+PRNTYQCAMGKQA+G I YNQ NRIDTL+Y LVY QRPMV
Sbjct: 690 ----------LIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLYTLVYPQRPMV 739

Query: 807 ESKTIRITNFHKLPAGK 823
            SKTI++ ++ KLPAG+
Sbjct: 740 ISKTIQLIHYDKLPAGQ 756



 Score = 96.7 bits (239), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 54/133 (40%), Positives = 83/133 (62%), Gaps = 4/133 (3%)

Query: 407 RNKTEYTSSSRRASTSSVTMHSQRTSPLLSCKKLRQK-RFQ---TYKKTPVDDARDFLSS 462
           R + E+T +   A+   V    Q    + S  K+  + RFQ     +K  +++  D LS+
Sbjct: 269 RYQDEFTVNFDEATKQGVYTQQQALEWIGSRVKMGGRGRFQPNSQARKNNIEEGMDALSN 328

Query: 463 TCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGSLLSLMFE 522
             IAHIPV  + F  KA+Y+A M RR+++A ++  ++DDRD+ GNKRLELAG LLSL+FE
Sbjct: 329 LIIAHIPVEGLDFYPKAIYVAFMTRRVLMAQANMSLVDDRDFVGNKRLELAGQLLSLLFE 388

Query: 523 DVFKRFNSELKET 535
           D+FK+F  ++K +
Sbjct: 389 DLFKKFCGDVKAS 401



 Score = 71.2 bits (173), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 32/61 (52%), Positives = 43/61 (70%), Gaps = 3/61 (4%)

Query: 349 SFNYTR---QTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCV 405
            FN  R   + TP ECRLRD+TY API VDI Y R   ++VR ++ +GR+P+ML+S+KC 
Sbjct: 94  DFNDARAHSEVTPMECRLRDMTYGAPIFVDIAYIRDKSKIVRRNVPLGRLPVMLKSAKCR 153

Query: 406 L 406
           L
Sbjct: 154 L 154



 Score = 67.0 bits (162), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 30/58 (51%), Positives = 46/58 (79%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           DK++L+ +FLK KGLVK HIDS+++F++ EIK +++AN  I SDV+  F+L++ DI V
Sbjct: 30  DKFQLLPAFLKVKGLVKQHIDSYNFFVDHEIKDIVRANRTIRSDVNSSFWLEFTDIRV 87


>gi|402220302|gb|EJU00374.1| subunit of DNA dependent RNA-polymerase [Dacryopinax sp. DJM-731 SS1]
          Length = 1151

 Score =  322 bits (826), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 148/270 (54%), Positives = 199/270 (73%), Gaps = 9/270 (3%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G IGYNQ  RIDTL+Y +VY Q+PMV+++TI + N
Sbjct: 685  GLIPYPHHNQSPRNTYQCAMGKQAIGAIGYNQFRRIDTLLYVMVYPQQPMVKTRTIELIN 744

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+AVMSYSGYDIEDA ++N+ASLDRG+GRC VYR +  ++++YPN T DR
Sbjct: 745  YDKLPAGQNATVAVMSYSGYDIEDASMINRASLDRGYGRCQVYRKNVTLIRKYPNGTFDR 804

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTIS---------VSAI 1083
            +    ++  T +P  ++ AL  DGI   GEQ+    V +NK  P  +         + + 
Sbjct: 805  LADAPIDEVTGRPPDKYSALQADGIAGVGEQLRPGDVYINKQSPANANDNSFNANVLDST 864

Query: 1084 SMATPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1143
            S +  +YK  P++Y+  V   ++KV+++    D  L+K+L+RQTRRPE+GDKFSSRHGQK
Sbjct: 865  STSLVQYKNTPMTYRSPVGGIVDKVMLTETENDQTLVKVLIRQTRRPELGDKFSSRHGQK 924

Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            GV GLI+ +EDMPFN+ GI PD+I NPHG+
Sbjct: 925  GVCGLIINEEDMPFNDQGIKPDVIFNPHGM 954



 Score =  266 bits (681), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 119/194 (61%), Positives = 155/194 (79%)

Query: 1179 ITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVI 1238
            + +YK  P++Y+  V   ++KV+++    D  L+K+L+RQTRRPE+GDKFSSRHGQKGV 
Sbjct: 868  LVQYKNTPMTYRSPVGGIVDKVMLTETENDQTLVKVLIRQTRRPELGDKFSSRHGQKGVC 927

Query: 1239 GLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGT 1298
            GLI+ +EDMPFN+ GI PD+I NPHG PSRMTVGK+IELLAGKAG+++G  + GTAFGG+
Sbjct: 928  GLIINEEDMPFNDQGIKPDVIFNPHGMPSRMTVGKMIELLAGKAGVLKGKLQYGTAFGGS 987

Query: 1299 KLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGP 1358
            K+ D+ + LI  G+NY GKD   SG+TGE +EAY+Y GP+YYQKLKHMV DK+H+R+RGP
Sbjct: 988  KVEDMSQILIEKGFNYAGKDYLTSGLTGEPMEAYVYFGPIYYQKLKHMVMDKMHSRARGP 1047

Query: 1359 RVVLTRQPTGRRWK 1372
            R VLTRQPT  R +
Sbjct: 1048 RAVLTRQPTEGRSR 1061



 Score =  209 bits (531), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 119/263 (45%), Positives = 166/263 (63%), Gaps = 18/263 (6%)

Query: 81  QPNWLGTVKAVHGTYLTMVTDETSKLKDSPE---IRDKWKLVLSFLKEKGLVKPHIDSFD 137
           +P W   ++A+    L  V  E   L   P+   I    + VL  +K++ LV    D  D
Sbjct: 312 RPAWEEAMEALATIVLAHV--EMEGLDFRPKAVYIAVMVRRVLMAMKDEKLV----DDRD 365

Query: 138 YFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPK-IKAAQFDIVN----HM 192
           Y  N  ++   Q  A ++ D   LF     D+ + I DK++ K  +  ++D++     H 
Sbjct: 366 YVGNKRLELAGQLLALLFED---LFKKFNQDLKMNI-DKVLKKPSRTEEYDVIKALTFHA 421

Query: 193 RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVS 252
           + + IT     AI TGNW+++RFKM+R GVT VLSRLS++S LGMMTRI SQFEKTRKVS
Sbjct: 422 QSEGITQGFIRAISTGNWSLKRFKMDRAGVTHVLSRLSFVSALGMMTRITSQFEKTRKVS 481

Query: 253 GPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMF 312
           GPR+LQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT+ +E+ ++++ + +G+E I + 
Sbjct: 482 GPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDVEEEPIVRVAFMLGVEDINLA 541

Query: 313 NGEELSSPGVYLVFVNGILAGIT 335
            G E+  P  ++V VNG + G+T
Sbjct: 542 TGPEIHHPDTFMVNVNGSIIGLT 564



 Score =  168 bits (426), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 82/136 (60%), Positives = 99/136 (72%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G   FDDFL +G +EYLDVNE NDS+IA+ E  I P  TTHLEI PFT+LG  AG     
Sbjct: 632 GHVTFDDFLRKGLVEYLDVNEENDSYIALYEREILP-TTTHLEIEPFTILGAVAG----- 685

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQA+G IGYNQ  RIDTL+Y +VY Q+PMV+
Sbjct: 686 ---------LIPYPHHNQSPRNTYQCAMGKQAIGAIGYNQFRRIDTLLYVMVYPQQPMVK 736

Query: 808 SKTIRITNFHKLPAGK 823
           ++TI + N+ KLPAG+
Sbjct: 737 TRTIELINYDKLPAGQ 752



 Score = 98.2 bits (243), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 41/80 (51%), Positives = 65/80 (81%)

Query: 454 DDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELA 513
           ++A + L++  +AH+ +  + F+ KA+Y+AVM+RR+++A+ D  ++DDRDY GNKRLELA
Sbjct: 316 EEAMEALATIVLAHVEMEGLDFRPKAVYIAVMVRRVLMAMKDEKLVDDRDYVGNKRLELA 375

Query: 514 GSLLSLMFEDVFKRFNSELK 533
           G LL+L+FED+FK+FN +LK
Sbjct: 376 GQLLALLFEDLFKKFNQDLK 395



 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/114 (38%), Positives = 71/114 (62%), Gaps = 7/114 (6%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           + DKW L+ +FLK KGLVK H+DSF+YF++V+++++++AN  + SDVDP FY+KY  I V
Sbjct: 18  VEDKWLLLPAFLKVKGLVKQHVDSFNYFVDVDLQQILRANNLVTSDVDPRFYIKYTHIAV 77

Query: 172 GIADKIIPKIKAA--QFDIVNH---MRQDTITNALTAAIQ--TGNWTIRRFKME 218
           G  ++  P    +  +F +  H   +R  T +  +T  ++   GN  I R  +E
Sbjct: 78  GPPERADPDQGESPERFSVTPHECRLRDTTYSGRITVNVEYIRGNKKIIRRGIE 131



 Score = 80.5 bits (197), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 34/56 (60%), Positives = 46/56 (82%)

Query: 356 TTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKTE 411
            TPHECRLRD TYS  ITV++EY RG+++++R  + IGR+PIML+S+KCVL  K+E
Sbjct: 96  VTPHECRLRDTTYSGRITVNVEYIRGNKKIIRRGIEIGRLPIMLRSNKCVLTGKSE 151


>gi|170097637|ref|XP_001880038.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164645441|gb|EDR09689.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 1142

 Score =  322 bits (825), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 153/264 (57%), Positives = 193/264 (73%), Gaps = 4/264 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G IGYNQ NRIDTL+Y  VY Q+PMV++KTI +  
Sbjct: 683  GLIPYPHHNQSPRNTYQCAMGKQAIGAIGYNQMNRIDTLLYLSVYPQQPMVKTKTIELIG 742

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + +LPAGQNAT+AVMSYSGYDIEDALI+NKASLDRG+GRC V R +  ++++YPN T DR
Sbjct: 743  YDRLPAGQNATVAVMSYSGYDIEDALILNKASLDRGYGRCQVLRKNATLIRKYPNGTFDR 802

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAI---SMATPE 1089
            +    L+ + +    ++  +  DG+   GE++    V VNK  PT +         A+  
Sbjct: 803  LADAPLDENGQLN-KKYDIIQSDGLAGVGERVDPGDVYVNKQSPTNATDNTFTGQAASVP 861

Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
            YK  P++YK  V   ++KV++S    D  LIK+L+RQTRRPE+GDKFSSRHGQKGV GLI
Sbjct: 862  YKNTPLTYKSPVAGNIDKVMISDTENDQTLIKVLIRQTRRPELGDKFSSRHGQKGVCGLI 921

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
            V QEDMPFN+ GI PD IMNPHG 
Sbjct: 922  VNQEDMPFNDDGINPDTIMNPHGF 945



 Score =  277 bits (708), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 127/189 (67%), Positives = 152/189 (80%)

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
            YK  P++YK  V   ++KV++S    D  LIK+L+RQTRRPE+GDKFSSRHGQKGV GLI
Sbjct: 862  YKNTPLTYKSPVAGNIDKVMISDTENDQTLIKVLIRQTRRPELGDKFSSRHGQKGVCGLI 921

Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
            V QEDMPFN+ GI PD IMNPHG+PSRMTVGK+IELLAGKAG++ G  + GTAFGG+K+ 
Sbjct: 922  VNQEDMPFNDDGINPDTIMNPHGFPSRMTVGKMIELLAGKAGVLAGKLQYGTAFGGSKVE 981

Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
            D+   LI HG++Y GKD+  SGITGE LEAY+Y GP+YYQKLKHMV DK+HAR+RGPR  
Sbjct: 982  DMSRILIDHGFSYAGKDMLTSGITGEPLEAYVYFGPIYYQKLKHMVMDKMHARARGPRAT 1041

Query: 1362 LTRQPTGRR 1370
            LTRQPT  R
Sbjct: 1042 LTRQPTEGR 1050



 Score =  214 bits (544), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 110/206 (53%), Positives = 147/206 (71%), Gaps = 7/206 (3%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPK-IKAAQFDIVN- 190
           +D  DY  N  ++   Q  A ++ D   LF     ++ + I DK++ K  + ++FD  N 
Sbjct: 361 VDDRDYVGNKRLELAGQLLALLFED---LFKTYNSNLKIAI-DKVLKKPSRTSEFDAYNT 416

Query: 191 -HMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
             M+ D +T+    AI TGNW+++RFKMER GVT VLSRLS+IS LGMMTRI+SQFEKTR
Sbjct: 417 MQMQGDHLTSGFVRAISTGNWSLKRFKMERAGVTHVLSRLSFISALGMMTRISSQFEKTR 476

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHI 309
           KVSGPR+LQ SQWG+LCPSDTPEGEACGLVKNLALMTHITT+ +E+ + ++ + +GIE I
Sbjct: 477 KVSGPRALQPSQWGVLCPSDTPEGEACGLVKNLALMTHITTDVEEEPITRLAFMLGIEDI 536

Query: 310 AMFNGEELSSPGVYLVFVNGILAGIT 335
            +  G E+  PGV++V VNG + G+T
Sbjct: 537 NLTTGTEIYGPGVFVVNVNGTIIGVT 562



 Score =  171 bits (433), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 84/141 (59%), Positives = 101/141 (71%), Gaps = 15/141 (10%)

Query: 683 MHQFLGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAG 742
           MH   G   FDDFL +G +EYLDVNE ND++IA+ ES I P  TTHLEI PFT+LG  AG
Sbjct: 625 MHLKKGNVTFDDFLRKGLVEYLDVNEENDTYIALYESDIVPA-TTHLEIEPFTILGAVAG 683

Query: 743 IELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQ 802
                         L+PYPHHNQ+PRNTYQCAMGKQA+G IGYNQ NRIDTL+Y  VY Q
Sbjct: 684 --------------LIPYPHHNQSPRNTYQCAMGKQAIGAIGYNQMNRIDTLLYLSVYPQ 729

Query: 803 RPMVESKTIRITNFHKLPAGK 823
           +PMV++KTI +  + +LPAG+
Sbjct: 730 QPMVKTKTIELIGYDRLPAGQ 750



 Score =  100 bits (248), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 51/137 (37%), Positives = 86/137 (62%), Gaps = 1/137 (0%)

Query: 397 IMLQSSKCVLRNKTEYTSSSRRASTSSVTMHSQRTSPLLSCKKLRQKRFQTYKKTPVDDA 456
           I+L ++      K  ++++   A+   V    Q    + S  K+  +R    ++   ++A
Sbjct: 260 ILLLTAGTTEAYKNTFSANLEDAAKLGVYTRQQALEYIGSRVKI-NRRVMGPRRPAWEEA 318

Query: 457 RDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGSL 516
            + L++  +AH+PV  + F+ KA+++A M RR+++A+ D +M+DDRDY GNKRLELAG L
Sbjct: 319 LEALATIVLAHVPVNGLDFRSKAIFVATMTRRVLMAMQDENMVDDRDYVGNKRLELAGQL 378

Query: 517 LSLMFEDVFKRFNSELK 533
           L+L+FED+FK +NS LK
Sbjct: 379 LALLFEDLFKTYNSNLK 395



 Score = 88.2 bits (217), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 37/65 (56%), Positives = 52/65 (80%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           + DKW L+ +FLK KGLVK HIDSF+YF++++IK +++AN  + SDVDP F+LKY DI+V
Sbjct: 31  VEDKWLLLPAFLKVKGLVKQHIDSFNYFVDIDIKNIVRANNKVTSDVDPRFWLKYTDINV 90

Query: 172 GIADK 176
           G  D+
Sbjct: 91  GFPDR 95



 Score = 80.9 bits (198), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 38/68 (55%), Positives = 51/68 (75%), Gaps = 1/68 (1%)

Query: 344 PEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSK 403
           P+  E     ++ TPHECRLRD+TY API V I+YTRG + +V+ ++ IGR+PIML+SSK
Sbjct: 93  PDRNELEAIDKRVTPHECRLRDITYGAPIVVTIQYTRG-KSIVQRNVNIGRLPIMLRSSK 151

Query: 404 CVLRNKTE 411
           CVL  +TE
Sbjct: 152 CVLTGRTE 159


>gi|367054822|ref|XP_003657789.1| hypothetical protein THITE_2123824 [Thielavia terrestris NRRL 8126]
 gi|347005055|gb|AEO71453.1| hypothetical protein THITE_2123824 [Thielavia terrestris NRRL 8126]
          Length = 1048

 Score =  322 bits (824), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 149/264 (56%), Positives = 197/264 (74%), Gaps = 4/264 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+P+PHHNQ+PRNTYQCAMGKQA+G I YNQ NRIDTL+Y LVY QRPMV +KTI++ +
Sbjct: 582  GLIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLYTLVYPQRPMVITKTIQLIH 641

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+ VMSYSGYDIEDAL++NKAS DRGFGRC V+R     L QYPN   DR
Sbjct: 642  YDKLPAGQNATVVVMSYSGYDIEDALVLNKASCDRGFGRCQVFRKYAAELLQYPNGRKDR 701

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPE 1089
             LG + + +  + + +H  LD+DG+   G ++   + ++ K  P    S        + +
Sbjct: 702  -LGGIQKDEEGRTIAKHACLDKDGLAIVGYRVHSGETMIMKETPIDQTSTGIGSDRGSDD 760

Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
            ++  PV+Y+   P+Y++KV+VS+  +D  +IK+  RQTRRPE+GDKFSSRHGQKGV+G+I
Sbjct: 761  FRPAPVNYRTPDPAYIDKVMVSNTEKDTAIIKVQTRQTRRPELGDKFSSRHGQKGVVGII 820

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
            V+QEDMPF++SG+ PDIIMNPHG 
Sbjct: 821  VDQEDMPFSDSGVVPDIIMNPHGF 844



 Score =  250 bits (639), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 115/201 (57%), Positives = 158/201 (78%), Gaps = 3/201 (1%)

Query: 1175 GCDRITE-YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
            G DR ++ ++  PV+Y+   P+Y++KV+VS+  +D  +IK+  RQTRRPE+GDKFSSRHG
Sbjct: 753  GSDRGSDDFRPAPVNYRTPDPAYIDKVMVSNTEKDTAIIKVQTRQTRRPELGDKFSSRHG 812

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEG--NYKE 1291
            QKGV+G+IV+QEDMPF++SG+ PDIIMNPHG+PSRMTVGKL E L GKA ++ G  +Y  
Sbjct: 813  QKGVVGIIVDQEDMPFSDSGVVPDIIMNPHGFPSRMTVGKLFECLTGKAAVVAGRRDYGF 872

Query: 1292 GTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKI 1351
            G AF    + ++   L+ HG++++GKD F SGITG+  EAY+++GP+YYQ+LKHMVQDK+
Sbjct: 873  GDAFRSHPVEEMGRVLVEHGFSWEGKDYFTSGITGDPHEAYLFNGPIYYQRLKHMVQDKM 932

Query: 1352 HARSRGPRVVLTRQPTGRRWK 1372
            H+RS GPR +LTRQPT  R +
Sbjct: 933  HSRSSGPRAILTRQPTEGRSR 953



 Score =  193 bits (490), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 91/147 (61%), Positives = 113/147 (76%), Gaps = 2/147 (1%)

Query: 196 TITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVSGPR 255
           +IT  L  AIQ+GNW ++RF M R GVT VLSRLSYI+ +GMMTRI+SQFEKTRKVSGPR
Sbjct: 320 SITQGLNRAIQSGNWNVKRFNMNRAGVTHVLSRLSYIAVVGMMTRISSQFEKTRKVSGPR 379

Query: 256 SLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNI--GIEHIAMFN 313
           +LQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT  +E+ +   ++ +  G++ I MF 
Sbjct: 380 ALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTNAEEQPVRNWIFGLIEGVQPIRMFT 439

Query: 314 GEELSSPGVYLVFVNGILAGITCHHKE 340
           G E+  PG Y++ +NG    +T H K+
Sbjct: 440 GTEMHKPGTYIIHLNGTPFALTRHPKQ 466



 Score =  167 bits (424), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 91/167 (54%), Positives = 110/167 (65%), Gaps = 19/167 (11%)

Query: 657 ARNSQQYCDCPDGYSSGCQPRPTFLNMHQFLGFKRFDDFLYEGKIEYLDVNEGNDSHIAV 716
            R  + Y    DG S   + +P  L + Q LG   F+DFL  G IEYLDVNE ND+ IA+
Sbjct: 502 GRICRPYIIVKDGKS---KLKPEHLRLLQ-LGKATFEDFLKRGVIEYLDVNEENDALIAI 557

Query: 717 SESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMG 776
           SE  I    TTHLEI PFT+LG  AG              L+P+PHHNQ+PRNTYQCAMG
Sbjct: 558 SEDDINQS-TTHLEIEPFTILGAVAG--------------LIPFPHHNQSPRNTYQCAMG 602

Query: 777 KQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
           KQA+G I YNQ NRIDTL+Y LVY QRPMV +KTI++ ++ KLPAG+
Sbjct: 603 KQAIGAIAYNQFNRIDTLLYTLVYPQRPMVITKTIQLIHYDKLPAGQ 649



 Score = 98.2 bits (243), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 42/85 (49%), Positives = 67/85 (78%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           +++PV++  D L++  IAH+ + ++ F  KA+Y+A+M+RR+++A  +P ++DDRD+ GNK
Sbjct: 208 RRSPVEEGLDALANIIIAHVTIEDLDFYPKAIYIAMMVRRVLMAAHNPKLVDDRDFVGNK 267

Query: 509 RLELAGSLLSLMFEDVFKRFNSELK 533
           RLELAG LLSL+FED+FK F + LK
Sbjct: 268 RLELAGQLLSLLFEDLFKMFVASLK 292



 Score = 67.4 bits (163), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 26/51 (50%), Positives = 40/51 (78%)

Query: 360 ECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
           ECRLRD+TY+AP+ VDI Y+R  ++++R D+ + R+P+ML+S+KC L   T
Sbjct: 2   ECRLRDMTYAAPVVVDIAYSRDRKKIIRRDIPLCRIPVMLKSAKCCLSGAT 52


>gi|367035314|ref|XP_003666939.1| hypothetical protein MYCTH_2312111 [Myceliophthora thermophila ATCC
            42464]
 gi|347014212|gb|AEO61694.1| hypothetical protein MYCTH_2312111 [Myceliophthora thermophila ATCC
            42464]
          Length = 1155

 Score =  322 bits (824), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 148/264 (56%), Positives = 198/264 (75%), Gaps = 4/264 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+P+PHHNQ+PRNTYQCAMGKQA+G I YNQ NRIDTL+Y LVY QRPMV +KTI++ +
Sbjct: 689  GLIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLYTLVYPQRPMVITKTIQLIH 748

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+ VMSYSGYDIEDAL++NKAS DRGFGRC V+R     L+QYPN   DR
Sbjct: 749  YDKLPAGQNATVVVMSYSGYDIEDALVLNKASCDRGFGRCQVFRKYTAELQQYPNGRKDR 808

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPE 1089
             LG + + +  + + +H  LD+DG+   G ++   + ++ K  P    S        + E
Sbjct: 809  -LGGIQKDEEGRTIAKHACLDKDGLAVVGYRVHSGETMIMKETPIDQTSTGIGSDRGSDE 867

Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
            ++  P++Y+   P+Y++KV+VS+  ++  +IK+  RQTRRPE+GDKFSSRHGQKGV+G+I
Sbjct: 868  FRPAPINYRIPDPAYIDKVMVSNTEKNTAIIKVQTRQTRRPELGDKFSSRHGQKGVVGII 927

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
            V+QEDMPF++SG+ PDIIMNPHG 
Sbjct: 928  VDQEDMPFSDSGLVPDIIMNPHGF 951



 Score =  252 bits (644), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 117/201 (58%), Positives = 159/201 (79%), Gaps = 3/201 (1%)

Query: 1175 GCDRIT-EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
            G DR + E++  P++Y+   P+Y++KV+VS+  ++  +IK+  RQTRRPE+GDKFSSRHG
Sbjct: 860  GSDRGSDEFRPAPINYRIPDPAYIDKVMVSNTEKNTAIIKVQTRQTRRPELGDKFSSRHG 919

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEG--NYKE 1291
            QKGV+G+IV+QEDMPF++SG+ PDIIMNPHG+PSRMTVGKL E L GKA ++ G  +Y  
Sbjct: 920  QKGVVGIIVDQEDMPFSDSGLVPDIIMNPHGFPSRMTVGKLFECLTGKASVVAGRRDYGF 979

Query: 1292 GTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKI 1351
            G AF    + ++   LI HG++++GKD F SGITGE  EAY+++GP+YYQ+LKHMVQDK+
Sbjct: 980  GDAFRSHPVEEMGRVLIEHGFSWEGKDYFTSGITGEPHEAYLFNGPIYYQRLKHMVQDKM 1039

Query: 1352 HARSRGPRVVLTRQPTGRRWK 1372
            H+RSRGPR +LTRQPT  R +
Sbjct: 1040 HSRSRGPRAILTRQPTEGRSR 1060



 Score =  196 bits (498), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 93/146 (63%), Positives = 113/146 (77%), Gaps = 2/146 (1%)

Query: 197 ITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVSGPRS 256
           IT  L  AIQ+GNW ++RF M R GVT VLSRLSYI+ LGMMTRI+SQFEKTRKVSGPR+
Sbjct: 428 ITQGLNRAIQSGNWNVKRFNMNRAGVTHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRA 487

Query: 257 LQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNI--GIEHIAMFNG 314
           LQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT  +E+ +   ++++  G+E I MF G
Sbjct: 488 LQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTNAEEEPVKNWIFSLIPGVEPIRMFTG 547

Query: 315 EELSSPGVYLVFVNGILAGITCHHKE 340
            E+  PG Y++ +NG    +T H K+
Sbjct: 548 TEMHRPGSYIIHLNGTPFALTRHPKQ 573



 Score =  162 bits (411), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 80/137 (58%), Positives = 96/137 (70%), Gaps = 15/137 (10%)

Query: 687 LGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELL 746
           LG   FDDFL    IEYLDVNE ND+ IA+ E  +    TTH+EI PFT+LG  AG    
Sbjct: 635 LGKATFDDFLKNSVIEYLDVNEENDALIAIREEDVNQS-TTHMEIEPFTILGAVAG---- 689

Query: 747 QYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMV 806
                     L+P+PHHNQ+PRNTYQCAMGKQA+G I YNQ NRIDTL+Y LVY QRPMV
Sbjct: 690 ----------LIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLYTLVYPQRPMV 739

Query: 807 ESKTIRITNFHKLPAGK 823
            +KTI++ ++ KLPAG+
Sbjct: 740 ITKTIQLIHYDKLPAGQ 756



 Score = 98.6 bits (244), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 42/85 (49%), Positives = 66/85 (77%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           +++PV++  D L++  +AH+ + ++ F  KA+Y+A+M+RR+++A  DP ++DDRD+ GNK
Sbjct: 315 RRSPVEEGLDALANVVVAHVEIQDLDFYPKAIYIAMMVRRVLMASHDPKLVDDRDFVGNK 374

Query: 509 RLELAGSLLSLMFEDVFKRFNSELK 533
           RLELAG LLSL+FED+FK F   LK
Sbjct: 375 RLELAGQLLSLLFEDMFKMFVGSLK 399



 Score = 73.2 bits (178), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/62 (48%), Positives = 44/62 (70%)

Query: 349 SFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRN 408
            F    + TP ECRLRD+TY+AP+ VDI Y+R  +++VR D+ + R+P+ML+S+KC L  
Sbjct: 97  DFKARDEVTPMECRLRDMTYAAPVVVDIVYSRDRKKIVRKDIPLCRIPVMLKSAKCCLSG 156

Query: 409 KT 410
            T
Sbjct: 157 AT 158



 Score = 65.1 bits (157), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/59 (50%), Positives = 45/59 (76%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           DK++L+ +FLK KGLVK HIDS+++F+  EIK +++AN  I SD +  F+L++ DI VG
Sbjct: 30  DKYQLLPAFLKVKGLVKQHIDSYNFFVEHEIKDIVRANRIIRSDQEKDFWLEFTDIRVG 88


>gi|392563480|gb|EIW56659.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
            [Trametes versicolor FP-101664 SS1]
          Length = 1143

 Score =  322 bits (824), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 152/264 (57%), Positives = 195/264 (73%), Gaps = 4/264 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G IGYNQ NRIDTL+Y  VY Q+PMV++KTI +  
Sbjct: 684  GLIPYPHHNQSPRNTYQCAMGKQAIGAIGYNQLNRIDTLLYLSVYPQQPMVKTKTIELIG 743

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + +LPAGQNAT+AVMSYSGYDIEDALI+NKASLDRG+GRC V R +  ++++YPN T+DR
Sbjct: 744  YDRLPAGQNATVAVMSYSGYDIEDALILNKASLDRGYGRCQVLRKNATLIRKYPNGTYDR 803

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPE 1089
            +    ++ +T +   ++  +  DG+   GE++    V +NK  PT +         AT  
Sbjct: 804  LADAPVD-ETGQVQKKYDIIQPDGLAGVGERVDPGDVYINKQTPTNANDNSFTGQAATVP 862

Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
            YK  P++YK  V   ++KV+++    D  LIK+L+RQTRRPE+GDKFSSRHGQKGV GLI
Sbjct: 863  YKNAPMTYKSPVAGQIDKVMITDTENDQTLIKVLIRQTRRPELGDKFSSRHGQKGVCGLI 922

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
            V QEDMPFN+ GI PD IMNPHG 
Sbjct: 923  VNQEDMPFNDQGIVPDTIMNPHGF 946



 Score =  275 bits (702), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 127/202 (62%), Positives = 154/202 (76%)

Query: 1169 NPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKF 1228
            N +   G      YK  P++YK  V   ++KV+++    D  LIK+L+RQTRRPE+GDKF
Sbjct: 850  NDNSFTGQAATVPYKNAPMTYKSPVAGQIDKVMITDTENDQTLIKVLIRQTRRPELGDKF 909

Query: 1229 SSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGN 1288
            SSRHGQKGV GLIV QEDMPFN+ GI PD IMNPHG+PSRMTVGK+IELLAGKAG++ G 
Sbjct: 910  SSRHGQKGVCGLIVNQEDMPFNDQGIVPDTIMNPHGFPSRMTVGKMIELLAGKAGVLAGK 969

Query: 1289 YKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQ 1348
             + GTAFGG+K+ D+   LI  G++Y GKD+  SGITGE LEAY+Y GP+YYQKLKHMV 
Sbjct: 970  LQYGTAFGGSKVEDMSRILIEKGFSYAGKDMLTSGITGEPLEAYVYFGPIYYQKLKHMVM 1029

Query: 1349 DKIHARSRGPRVVLTRQPTGRR 1370
            DK+HAR+RGPR  LTRQPT  R
Sbjct: 1030 DKMHARARGPRATLTRQPTEGR 1051



 Score =  214 bits (545), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 110/206 (53%), Positives = 146/206 (70%), Gaps = 7/206 (3%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPK-IKAAQFDIVNH 191
           +D  DY  N  ++   Q  A ++ D   LF     ++   I DK++ K  + ++FD  N 
Sbjct: 362 VDDRDYVGNKRLELAGQLLALLFED---LFKTFNANLKAAI-DKVLKKPSRTSEFDAFNT 417

Query: 192 MR--QDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
           M+   D IT+    AI TGNW+++RFKMER GVT VLSRLS++S LGMMTRI+SQFEKTR
Sbjct: 418 MQFQGDHITSGFVRAISTGNWSLKRFKMERAGVTHVLSRLSFVSALGMMTRISSQFEKTR 477

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHI 309
           KVSGPR+LQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT+ DE+ +++I + +G+E I
Sbjct: 478 KVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDVDEEPIIRIAFMLGVEDI 537

Query: 310 AMFNGEELSSPGVYLVFVNGILAGIT 335
           ++  G E+  P  ++V VNG + G+T
Sbjct: 538 SLATGTEIYGPHTFVVNVNGTIIGLT 563



 Score =  171 bits (432), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 83/132 (62%), Positives = 98/132 (74%), Gaps = 15/132 (11%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKR 751
           FDDFL +G +EYLDVNE NDS+IA+ E  I PG TTHLEI PFTLLG  AG         
Sbjct: 635 FDDFLRKGLVEYLDVNEENDSYIALYEKDIVPG-TTHLEIEPFTLLGAVAG--------- 684

Query: 752 FHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTI 811
                L+PYPHHNQ+PRNTYQCAMGKQA+G IGYNQ NRIDTL+Y  VY Q+PMV++KTI
Sbjct: 685 -----LIPYPHHNQSPRNTYQCAMGKQAIGAIGYNQLNRIDTLLYLSVYPQQPMVKTKTI 739

Query: 812 RITNFHKLPAGK 823
            +  + +LPAG+
Sbjct: 740 ELIGYDRLPAGQ 751



 Score = 99.4 bits (246), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 43/91 (47%), Positives = 67/91 (73%)

Query: 443 KRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDR 502
           +R    ++   ++A + L++  +AH+PV  + F+ KA+++A M RR+++A+ D  M+DDR
Sbjct: 306 RRVMGPRRPAWEEALEALATIVLAHVPVSGLDFRSKAVFVATMTRRVLMAMDDEKMVDDR 365

Query: 503 DYYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
           DY GNKRLELAG LL+L+FED+FK FN+ LK
Sbjct: 366 DYVGNKRLELAGQLLALLFEDLFKTFNANLK 396



 Score = 87.8 bits (216), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 38/65 (58%), Positives = 51/65 (78%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           + DKW L+ +FLK KGLVK HIDSF+YF++V+IK +++AN  + SDVDP F+LKY DI V
Sbjct: 31  VEDKWLLLPAFLKVKGLVKQHIDSFNYFVDVDIKNILKANNKVTSDVDPRFWLKYTDIVV 90

Query: 172 GIADK 176
           G  D+
Sbjct: 91  GFPDR 95



 Score = 81.6 bits (200), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 37/68 (54%), Positives = 49/68 (72%)

Query: 344 PEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSK 403
           P+  ++    +  TPHECRLRD TY API V I+YTRG   V R+++ IGR+PIML+S+K
Sbjct: 93  PDRTDADAIDKSVTPHECRLRDTTYGAPILVTIQYTRGKSVVRRANVNIGRLPIMLRSNK 152

Query: 404 CVLRNKTE 411
           CVL  +TE
Sbjct: 153 CVLTGRTE 160


>gi|429851912|gb|ELA27071.1| DNA-directed RNA polymerase iii 130 kda polypeptide [Colletotrichum
            gloeosporioides Nara gc5]
          Length = 1451

 Score =  322 bits (824), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 148/264 (56%), Positives = 197/264 (74%), Gaps = 5/264 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+P+PHHNQ+PRNTYQCAMGKQA+G I YNQ NRIDTL+Y LVY QRPMV SKTI++ N
Sbjct: 686  GLIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLYTLVYPQRPMVISKTIQLVN 745

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+ VMSYSGYDIEDAL++NKAS DRGFGRC V+R     L++YPN   +R
Sbjct: 746  YDKLPAGQNATVIVMSYSGYDIEDALVLNKASCDRGFGRCQVFRKYTAELQKYPNGRRER 805

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPE 1089
            I  P+ + + R    +H ALD DG+   G +I   + ++ K  P  + S    +     E
Sbjct: 806  IGDPVNDENGR--TKKHEALDDDGLAIVGYKINSGETMIKKETPLDTGSTGIGMDRGPSE 863

Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
            +++  +SY+ + P+Y++KV+VS    +  ++K+  RQTRRPE+GDKFSSRHGQKGV+G+I
Sbjct: 864  FRDSSISYRIADPAYIDKVMVSHTERETMVVKVQTRQTRRPELGDKFSSRHGQKGVVGII 923

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
            V+QED+PF+++G+ PDIIMNPHG 
Sbjct: 924  VDQEDLPFSDTGLVPDIIMNPHGF 947



 Score =  255 bits (652), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 116/199 (58%), Positives = 159/199 (79%), Gaps = 3/199 (1%)

Query: 1175 GCDR-ITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
            G DR  +E+++  +SY+ + P+Y++KV+VS    +  ++K+  RQTRRPE+GDKFSSRHG
Sbjct: 856  GMDRGPSEFRDSSISYRIADPAYIDKVMVSHTERETMVVKVQTRQTRRPELGDKFSSRHG 915

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEG--NYKE 1291
            QKGV+G+IV+QED+PF+++G+ PDIIMNPHG+PSRMTVGKL+E L GKA +++G  +Y  
Sbjct: 916  QKGVVGIIVDQEDLPFSDTGLVPDIIMNPHGFPSRMTVGKLLECLTGKASVLDGRKDYGF 975

Query: 1292 GTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKI 1351
            G AF    L  +   L+ HG++++GKD F SGITGE LEAYI++GP+YYQ+LKHMVQDK+
Sbjct: 976  GDAFRSHPLEQMSAALVDHGFSWEGKDYFTSGITGEPLEAYIFNGPIYYQRLKHMVQDKM 1035

Query: 1352 HARSRGPRVVLTRQPTGRR 1370
            H+RSRGPR +LTRQPT  R
Sbjct: 1036 HSRSRGPRAILTRQPTEGR 1054



 Score =  187 bits (474), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 96/170 (56%), Positives = 122/170 (71%), Gaps = 5/170 (2%)

Query: 175 DKIIPKI-KAAQFDIVNHMRQ--DTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSY 231
           DK++ K  +A   D VN +    + I   +  AIQTGNWT++RF M R GVT VLSRLSY
Sbjct: 400 DKVLKKDNRAVPLDAVNMISNHANMIGQGINRAIQTGNWTVKRFNMNRAGVTHVLSRLSY 459

Query: 232 ISGLGMMTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTE 291
           IS LGMMTRI+SQFEKTRKVSGPR+LQ SQWGMLC SDTPEGEACGLVKNLALMTHITT 
Sbjct: 460 ISALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCTSDTPEGEACGLVKNLALMTHITTN 519

Query: 292 NDEKNMLKIMYNI--GIEHIAMFNGEELSSPGVYLVFVNGILAGITCHHK 339
            +E+ + + ++ +  G+E I  F+G E+   G +++ +NG    +T + K
Sbjct: 520 VEEEPVKRWVFTLDAGVEPIRNFSGGEMHREGSFVIHINGTPFALTRYPK 569



 Score =  166 bits (420), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 81/137 (59%), Positives = 98/137 (71%), Gaps = 15/137 (10%)

Query: 687 LGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELL 746
           LG   FDDFL  G +EYLDVNE ND+ +A+ E+ +    TTH+EI PFT+LG  AG    
Sbjct: 632 LGKATFDDFLTHGIVEYLDVNEENDTLVALYETDVTM-TTTHMEIEPFTVLGAVAG---- 686

Query: 747 QYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMV 806
                     L+P+PHHNQ+PRNTYQCAMGKQA+G I YNQ NRIDTL+Y LVY QRPMV
Sbjct: 687 ----------LIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLYTLVYPQRPMV 736

Query: 807 ESKTIRITNFHKLPAGK 823
            SKTI++ N+ KLPAG+
Sbjct: 737 ISKTIQLVNYDKLPAGQ 753



 Score = 92.8 bits (229), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 42/87 (48%), Positives = 65/87 (74%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           ++  V++A D L++  IAH+P+  + F  KA+Y+A M RR+++A S+  ++DDRD+ GNK
Sbjct: 312 RRNHVEEALDALANLIIAHVPIEGLDFYPKAVYVAFMTRRVLMAQSNLSLVDDRDFVGNK 371

Query: 509 RLELAGSLLSLMFEDVFKRFNSELKET 535
           RLELAG LLSL+FED+FK+F   +K +
Sbjct: 372 RLELAGQLLSLLFEDLFKQFCGNVKSS 398



 Score = 70.9 bits (172), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 33/64 (51%), Positives = 44/64 (68%), Gaps = 3/64 (4%)

Query: 350 FNYTR---QTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVL 406
           FN  R   + TP ECRLRD+TY+API VDI Y R   ++VR ++ +GR+P+ML+SS C L
Sbjct: 93  FNDIRAQNEVTPMECRLRDMTYAAPIMVDIAYIRDKSKIVRKNVPLGRLPVMLKSSICRL 152

Query: 407 RNKT 410
              T
Sbjct: 153 GGAT 156



 Score = 66.2 bits (160), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/58 (51%), Positives = 46/58 (79%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           DK++L+ +FLK KGLVK HIDS+++F+  EIK++++AN  I SDV+  F+L++ DI V
Sbjct: 28  DKFQLLPAFLKVKGLVKQHIDSYNFFVENEIKEIVRANRIIRSDVNSSFWLEFTDIRV 85


>gi|341038522|gb|EGS23514.1| DNA-directed RNA polymerase-like protein [Chaetomium thermophilum
            var. thermophilum DSM 1495]
          Length = 1157

 Score =  322 bits (824), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 152/265 (57%), Positives = 199/265 (75%), Gaps = 6/265 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+P+PHHNQ+PRNTYQCAMGKQA+G I YNQ NRIDTL+Y LVY QRPMV +KTI++ +
Sbjct: 691  GLIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLYTLVYPQRPMVITKTIQLIH 750

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+ VMSYSGYDIEDAL++NKAS DRGFGRC V+R     L+QY N   DR
Sbjct: 751  YDKLPAGQNATVVVMSYSGYDIEDALVLNKASCDRGFGRCQVFRKYTAELQQYANGRKDR 810

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISM----ATP 1088
            + GP  + + R  + +H  LD+DG+   G QI   + ++ K  P + V++  +     + 
Sbjct: 811  LGGPQKDEEGRT-IAKHACLDRDGLAIVGYQIRSGETMIMKETP-VDVTSTGIGGDRGSD 868

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
             Y   PV+Y+ + P+Y++KV+VS+  ++  +IK+  RQTRRPE+GDKFSSRHGQKGV+G+
Sbjct: 869  AYVPAPVNYRINDPAYIDKVMVSNTEKNTAIIKVQTRQTRRPELGDKFSSRHGQKGVVGI 928

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            IV QEDMPF++SGI PDIIMNPHG 
Sbjct: 929  IVNQEDMPFSDSGIVPDIIMNPHGF 953



 Score =  250 bits (638), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 118/201 (58%), Positives = 157/201 (78%), Gaps = 3/201 (1%)

Query: 1175 GCDRITE-YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
            G DR ++ Y   PV+Y+ + P+Y++KV+VS+  ++  +IK+  RQTRRPE+GDKFSSRHG
Sbjct: 862  GGDRGSDAYVPAPVNYRINDPAYIDKVMVSNTEKNTAIIKVQTRQTRRPELGDKFSSRHG 921

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEG--NYKE 1291
            QKGV+G+IV QEDMPF++SGI PDIIMNPHG+PSRMTVGKL E L GKA ++ G  +Y  
Sbjct: 922  QKGVVGIIVNQEDMPFSDSGIVPDIIMNPHGFPSRMTVGKLFECLTGKAAVVAGRPDYGF 981

Query: 1292 GTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKI 1351
            G AF    + ++   LI HG++++GKD F SGITG   EAY+++GP+YYQ+LKHMVQDK+
Sbjct: 982  GDAFRSHPVEEMGRVLIEHGFSWEGKDYFTSGITGNPHEAYLFNGPIYYQRLKHMVQDKM 1041

Query: 1352 HARSRGPRVVLTRQPTGRRWK 1372
            H+RSRGPR +LTRQPT  R +
Sbjct: 1042 HSRSRGPRAILTRQPTEGRSR 1062



 Score =  196 bits (498), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 94/146 (64%), Positives = 112/146 (76%), Gaps = 2/146 (1%)

Query: 197 ITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVSGPRS 256
           IT  L  AIQ+GNWT+RRF M R GVT VLSRLSYIS LGMMTRI+SQFEKTRKVSGPR+
Sbjct: 430 ITQGLNRAIQSGNWTVRRFNMNRAGVTHVLSRLSYISALGMMTRISSQFEKTRKVSGPRA 489

Query: 257 LQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNI--GIEHIAMFNG 314
           L  SQWGMLC SDTPEGEACGLVKNLALMTHITT  DE+ +   ++++  G+E I +F G
Sbjct: 490 LHPSQWGMLCTSDTPEGEACGLVKNLALMTHITTNADEEPVKDCIFDLVPGVEPIRVFTG 549

Query: 315 EELSSPGVYLVFVNGILAGITCHHKE 340
            E+  PG Y++ +NG    +T H K+
Sbjct: 550 SEMHRPGSYIIHLNGTPFALTRHPKQ 575



 Score =  164 bits (416), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 84/147 (57%), Positives = 103/147 (70%), Gaps = 16/147 (10%)

Query: 677 RPTFLNMHQFLGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTL 736
           +P  L + Q LG   FDDFL  G +EYLDVNE ND+ IA++E  I    TTH+EI PFT+
Sbjct: 628 KPEHLRLLQ-LGKASFDDFLRLGVVEYLDVNEENDALIAMNEDEITRA-TTHMEIEPFTI 685

Query: 737 LGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMY 796
           LG  AG              L+P+PHHNQ+PRNTYQCAMGKQA+G I YNQ NRIDTL+Y
Sbjct: 686 LGAVAG--------------LIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLY 731

Query: 797 NLVYAQRPMVESKTIRITNFHKLPAGK 823
            LVY QRPMV +KTI++ ++ KLPAG+
Sbjct: 732 TLVYPQRPMVITKTIQLIHYDKLPAGQ 758



 Score = 95.5 bits (236), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 42/85 (49%), Positives = 65/85 (76%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           +++PV++  D L++  IAHI + ++ F  KA+Y+A+M+RR+++A  +P ++DDRD+ GNK
Sbjct: 317 RRSPVEEGLDALTNLIIAHITIEDLDFYPKAIYIAMMVRRVLMAAHNPKLIDDRDFVGNK 376

Query: 509 RLELAGSLLSLMFEDVFKRFNSELK 533
           R ELAG LLSL+FED FK F + LK
Sbjct: 377 RFELAGQLLSLLFEDQFKMFIASLK 401



 Score = 77.4 bits (189), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 33/62 (53%), Positives = 45/62 (72%)

Query: 349 SFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRN 408
            F    + TP ECRLRD+TY+AP+ VDI Y+R  +R+VR D+ + R+P+ML+SSKCVL  
Sbjct: 99  DFKARDEVTPMECRLRDMTYAAPVVVDIVYSRDRKRIVRKDIPLCRIPVMLKSSKCVLSK 158

Query: 409 KT 410
            T
Sbjct: 159 AT 160



 Score = 64.3 bits (155), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/58 (50%), Positives = 45/58 (77%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           DK++L+ +FLK KGLVK HIDS+++F+  EIK +++AN +I SD +  F+L++ DI V
Sbjct: 32  DKYQLLPAFLKVKGLVKQHIDSYNFFVEHEIKDIVRANRSIRSDQEKDFWLEFTDIRV 89


>gi|449544049|gb|EMD35023.1| hypothetical protein CERSUDRAFT_116535 [Ceriporiopsis subvermispora
            B]
          Length = 1145

 Score =  322 bits (824), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 154/264 (58%), Positives = 191/264 (72%), Gaps = 4/264 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G IGYNQ NRIDTL+Y  VY Q+PMV++KTI +  
Sbjct: 686  GLIPYPHHNQSPRNTYQCAMGKQAIGAIGYNQLNRIDTLLYLSVYPQQPMVKTKTIELIG 745

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + +LPAGQNAT+AVMSYSGYDIEDALI NKASLDRG+GRC V R +  ++++YPN T DR
Sbjct: 746  YDRLPAGQNATVAVMSYSGYDIEDALIQNKASLDRGYGRCQVLRKNTTLIRKYPNGTFDR 805

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPE 1089
             L      D  +   ++  +  DG+   GE++    V +NK  PT +         AT  
Sbjct: 806  -LADAPADDNGQIQKKYDIIQLDGLAGVGERVDPGDVYINKQTPTNANDNSFTGQAATVP 864

Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
            YK  P++YK  V  Y++KV+++    D  LIK+L+RQTRRPE+GDKFSSRHGQKGV GLI
Sbjct: 865  YKNAPMTYKSPVAGYIDKVMITDTENDQTLIKVLIRQTRRPELGDKFSSRHGQKGVCGLI 924

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
            V QEDMPFN+ GI PD IMNPHG 
Sbjct: 925  VNQEDMPFNDQGIVPDTIMNPHGF 948



 Score =  278 bits (711), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 127/202 (62%), Positives = 156/202 (77%)

Query: 1169 NPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKF 1228
            N +   G      YK  P++YK  V  Y++KV+++    D  LIK+L+RQTRRPE+GDKF
Sbjct: 852  NDNSFTGQAATVPYKNAPMTYKSPVAGYIDKVMITDTENDQTLIKVLIRQTRRPELGDKF 911

Query: 1229 SSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGN 1288
            SSRHGQKGV GLIV QEDMPFN+ GI PD IMNPHG+PSRMTVGK+IELLAGKAG++ G 
Sbjct: 912  SSRHGQKGVCGLIVNQEDMPFNDQGIVPDTIMNPHGFPSRMTVGKMIELLAGKAGVLAGK 971

Query: 1289 YKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQ 1348
             + GTAFGG+K+ D+   LI +G++Y GKD+  SGITGE +EAY+Y GP+YYQKLKHMV 
Sbjct: 972  LQYGTAFGGSKVEDMSRILIENGFSYSGKDMLTSGITGEPMEAYVYFGPIYYQKLKHMVM 1031

Query: 1349 DKIHARSRGPRVVLTRQPTGRR 1370
            DK+HAR+RGPR  LTRQPT  R
Sbjct: 1032 DKMHARARGPRATLTRQPTEGR 1053



 Score =  211 bits (536), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 109/206 (52%), Positives = 146/206 (70%), Gaps = 7/206 (3%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPK-IKAAQFDIVNH 191
           +D  DY  N  ++   Q  A ++ D   LF     ++   I DK++ K  + ++FD  N 
Sbjct: 364 VDDRDYVGNKRLELAGQLLALLFED---LFKTFNANLKSAI-DKVLKKPSRTSEFDAFNT 419

Query: 192 MR--QDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
           M+   D IT+    AI TGNW+++RFKM+R GVT VLSRLS+IS LGMMTRI+SQFEKTR
Sbjct: 420 MQFQGDHITSGFVRAISTGNWSLKRFKMDRAGVTHVLSRLSFISALGMMTRISSQFEKTR 479

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHI 309
           KVSGPR+LQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT+ +E+ +++I + +G+E I
Sbjct: 480 KVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDVEEEPIIRIAFMLGVEDI 539

Query: 310 AMFNGEELSSPGVYLVFVNGILAGIT 335
           ++  G E+  P  ++V VNG + G+T
Sbjct: 540 SVATGTEIYGPNTFVVNVNGTIIGLT 565



 Score =  169 bits (428), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 83/136 (61%), Positives = 98/136 (72%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G   FDDFL +G +EYLDVNE NDS+IA+ E  I P  TTHLEI PFTLLG  AG     
Sbjct: 633 GLLTFDDFLRKGLVEYLDVNEENDSYIALYERDIVPA-TTHLEIEPFTLLGAVAG----- 686

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQA+G IGYNQ NRIDTL+Y  VY Q+PMV+
Sbjct: 687 ---------LIPYPHHNQSPRNTYQCAMGKQAIGAIGYNQLNRIDTLLYLSVYPQQPMVK 737

Query: 808 SKTIRITNFHKLPAGK 823
           +KTI +  + +LPAG+
Sbjct: 738 TKTIELIGYDRLPAGQ 753



 Score = 98.2 bits (243), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 42/80 (52%), Positives = 63/80 (78%)

Query: 454 DDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELA 513
           ++A + L++  +AH+PV  + F+ KA+++A M RR+++A+ D  M+DDRDY GNKRLELA
Sbjct: 319 EEALEALATIVLAHVPVHGLDFRSKAIFVATMTRRVLMAMDDEKMVDDRDYVGNKRLELA 378

Query: 514 GSLLSLMFEDVFKRFNSELK 533
           G LL+L+FED+FK FN+ LK
Sbjct: 379 GQLLALLFEDLFKTFNANLK 398



 Score = 88.6 bits (218), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/65 (56%), Positives = 52/65 (80%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           + DKW L+ +FLK KGLVK HIDSF+YF++V+IK +++AN  + SDVDP F+LKY DI++
Sbjct: 33  VEDKWLLLPAFLKVKGLVKQHIDSFNYFVDVDIKNILRANNKVTSDVDPRFWLKYTDINI 92

Query: 172 GIADK 176
           G  D+
Sbjct: 93  GFPDR 97



 Score = 82.0 bits (201), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/68 (55%), Positives = 49/68 (72%)

Query: 344 PEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSK 403
           P+  ++    +  TPHECRLRD TYSAPI V I+YTRG   V R ++ IGR+PIML+S+K
Sbjct: 95  PDRTDADAVDKSVTPHECRLRDTTYSAPILVTIQYTRGKTVVRRQNVNIGRIPIMLRSNK 154

Query: 404 CVLRNKTE 411
           CVL  +TE
Sbjct: 155 CVLTGRTE 162


>gi|256081823|ref|XP_002577167.1| DNA-directed RNA polymerase III subunit [Schistosoma mansoni]
 gi|360043957|emb|CCD81503.1| putative dna-directed RNA polymerase III subunit [Schistosoma
            mansoni]
          Length = 1126

 Score =  322 bits (824), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 155/294 (52%), Positives = 208/294 (70%), Gaps = 13/294 (4%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYP HNQ+PRNTYQCAMGKQA+G +  NQQ R DTL   +VY Q+P+V+SKTI++ +
Sbjct: 645  GLIPYPDHNQSPRNTYQCAMGKQAIGTVALNQQIRFDTLQCQMVYPQKPLVQSKTIQMMH 704

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F +LPAGQNA +A+MSYSGYD+EDAL++N+AS+DRGF R  VYR S   LK + N  +DR
Sbjct: 705  FDELPAGQNAVVAIMSYSGYDVEDALVINQASIDRGFARACVYRRSGVHLKMHENAVYDR 764

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAI--------- 1083
            ++GP +E +T         L  DG+   G  + +RQ+L+NK MP +S SA+         
Sbjct: 765  LMGPSIERETGVLRRGDEVLQADGVAYIGACVNDRQILINKEMPVVSSSAVLDNAGSLSL 824

Query: 1084 SMATP----EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSR 1139
            ++ TP    E+K  PV YKG  PSY+EKV+ S++  +  ++K+LLRQTRRPE+GDKFSSR
Sbjct: 825  NVNTPENATEFKRCPVDYKGIEPSYVEKVMFSTSEGNQAVVKILLRQTRRPEVGDKFSSR 884

Query: 1140 HGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSV 1193
            HGQKGV+GLIV QED+PF+ +G+ PDIIMNPHG      + +  EV  S  G++
Sbjct: 885  HGQKGVVGLIVRQEDLPFSTNGLTPDIIMNPHGFPSRMTVGKLLEVLGSKAGAI 938



 Score =  268 bits (685), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 123/191 (64%), Positives = 153/191 (80%)

Query: 1180 TEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1239
            TE+K  PV YKG  PSY+EKV+ S++  +  ++K+LLRQTRRPE+GDKFSSRHGQKGV+G
Sbjct: 833  TEFKRCPVDYKGIEPSYVEKVMFSTSEGNQAVVKILLRQTRRPEVGDKFSSRHGQKGVVG 892

Query: 1240 LIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTK 1299
            LIV QED+PF+ +G+ PDIIMNPHG+PSRMTVGKL+E+L  KAG +EG  ++G+AF G  
Sbjct: 893  LIVRQEDLPFSTNGLTPDIIMNPHGFPSRMTVGKLLEVLGSKAGAIEGKIRDGSAFSGDP 952

Query: 1300 LVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPR 1359
               + + LI HGY+Y GK+I YSG+TG  LEA+IY GPVYYQ+LKHMV DK+HARSRGP 
Sbjct: 953  AEVLSQVLIDHGYHYLGKEILYSGVTGAPLEAFIYFGPVYYQRLKHMVMDKVHARSRGPV 1012

Query: 1360 VVLTRQPTGRR 1370
              LTRQPT  R
Sbjct: 1013 TALTRQPTEGR 1023



 Score =  177 bits (449), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 94/213 (44%), Positives = 134/213 (62%), Gaps = 14/213 (6%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVNHM 192
           ++  D++ N  I+      A ++ DV   F     D+ + ++ KI  K +   FDI  H+
Sbjct: 328 VNDRDFYGNKRIELAGSLLALLFEDVFKTFNE---DLWLTVS-KIDTKRRCTPFDISRHI 383

Query: 193 RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVS 252
           +   IT  L  AI +GNW I+RF+M R GVTQV+SRLSY++ LG MTR+ SQFEKTRKVS
Sbjct: 384 KTWMITEQLNRAISSGNWIIKRFRMMRHGVTQVVSRLSYVAALGHMTRMTSQFEKTRKVS 443

Query: 253 GPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIM---YNIGIEHI 309
           GPRS+  SQWG++CPSDTPEGEACGLVKN+ALM H+T E D+ ++++++   Y   +  +
Sbjct: 444 GPRSIHASQWGLICPSDTPEGEACGLVKNVALMCHVTVEVDDAHLIELISNYYTFPLYQM 503

Query: 310 AMFNGEELSSPGVYLVFVNGILAGITCHHKEVC 342
                E       Y+++VNG   G T H  ++C
Sbjct: 504 RYAKNE-------YVIYVNGKPIGFTQHPGKLC 529



 Score =  140 bits (352), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 70/133 (52%), Positives = 91/133 (68%), Gaps = 15/133 (11%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGV-TTHLEIAPFTLLGVCAGIELLQYNK 750
           +DD L +G +EYLDVNE ND  +A+ ES +  G   TH+EI P T+LGV AG        
Sbjct: 594 WDDLLKKGLVEYLDVNELNDCLVAMDESCLTDGNHYTHMEIDPATILGVVAG-------- 645

Query: 751 RFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKT 810
                 L+PYP HNQ+PRNTYQCAMGKQA+G +  NQQ R DTL   +VY Q+P+V+SKT
Sbjct: 646 ------LIPYPDHNQSPRNTYQCAMGKQAIGTVALNQQIRFDTLQCQMVYPQKPLVQSKT 699

Query: 811 IRITNFHKLPAGK 823
           I++ +F +LPAG+
Sbjct: 700 IQMMHFDELPAGQ 712



 Score = 84.3 bits (207), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/95 (43%), Positives = 63/95 (66%), Gaps = 1/95 (1%)

Query: 439 KLRQKRFQT-YKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPD 497
           +LRQ R++T +    + + + FL    I H+ +  + F  +A +L  M+R ++LA     
Sbjct: 267 RLRQPRYRTAFGADIILEIQRFLRDIIITHVEMEKLNFAPRAFFLGQMVRYLILANEKRI 326

Query: 498 MLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSEL 532
            ++DRD+YGNKR+ELAGSLL+L+FEDVFK FN +L
Sbjct: 327 PVNDRDFYGNKRIELAGSLLALLFEDVFKTFNEDL 361



 Score = 70.5 bits (171), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 31/67 (46%), Positives = 45/67 (67%)

Query: 344 PEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSK 403
           P + +      + TPH+CRLRDLTY+  I VD+ + R ++ V +  ++IGRMPIML+SS 
Sbjct: 62  PTVNDGGVVASRVTPHDCRLRDLTYAGEILVDVTFVRQNEVVSKKGVLIGRMPIMLKSSI 121

Query: 404 CVLRNKT 410
           CVL  K+
Sbjct: 122 CVLNGKS 128



 Score = 54.3 bits (129), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/60 (46%), Positives = 43/60 (71%), Gaps = 1/60 (1%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           ++ K  LV SFL  KGLVK HIDSF++FI  EIK +++AN+ + S  +  ++L+Y DI++
Sbjct: 1   MKQKHYLVPSFLASKGLVKLHIDSFNHFIQTEIKNIVRANSRV-SVPEANWWLEYNDIYI 59


>gi|393219485|gb|EJD04972.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
            [Fomitiporia mediterranea MF3/22]
          Length = 1148

 Score =  321 bits (823), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 153/267 (57%), Positives = 196/267 (73%), Gaps = 10/267 (3%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ NRIDTL+Y +VY Q+PMV++K+I +  
Sbjct: 688  GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLNRIDTLLYLMVYPQQPMVKTKSIELVG 747

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+AVMSYSGYDIEDALI+NKASLDRG+GRC V R +  ++++YPN T+DR
Sbjct: 748  YDKLPAGQNATVAVMSYSGYDIEDALILNKASLDRGYGRCQVMRKNATLIRKYPNGTYDR 807

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMP------TISVSAISMA 1086
            +    L+ + R    ++  +  DG+   GE++    V VNK  P      T +  A  +A
Sbjct: 808  LADAPLDENGRVQ-KKYDIIQSDGLAGVGERVDPGDVYVNKQTPSNANDNTFTGQAAGVA 866

Query: 1087 TPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVI 1146
               YK  P++YK  VP  ++KV+++    D  L+K+L+RQTRRPE+GDKFSSRHGQKGV 
Sbjct: 867  ---YKNTPMTYKSPVPGNIDKVMLTDTENDQTLVKVLIRQTRRPELGDKFSSRHGQKGVC 923

Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGL 1173
            GLIV QEDMPFN+ GI PD IMNPHG 
Sbjct: 924  GLIVNQEDMPFNDDGISPDSIMNPHGF 950



 Score =  277 bits (708), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 125/189 (66%), Positives = 154/189 (81%)

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
            YK  P++YK  VP  ++KV+++    D  L+K+L+RQTRRPE+GDKFSSRHGQKGV GLI
Sbjct: 867  YKNTPMTYKSPVPGNIDKVMLTDTENDQTLVKVLIRQTRRPELGDKFSSRHGQKGVCGLI 926

Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
            V QEDMPFN+ GI PD IMNPHG+PSRMTVGK+IELLAGKAG+++G  + GTAFGG+K+ 
Sbjct: 927  VNQEDMPFNDDGISPDSIMNPHGFPSRMTVGKMIELLAGKAGVLDGKLQYGTAFGGSKVE 986

Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
            D+ + LI  G+NY GKD+  SGITGE +EAY+Y GP+YYQKLKHMV DK+HAR+RGPR  
Sbjct: 987  DMSKILIERGFNYAGKDMLTSGITGEQMEAYVYFGPIYYQKLKHMVMDKMHARARGPRAT 1046

Query: 1362 LTRQPTGRR 1370
            LTRQPT  R
Sbjct: 1047 LTRQPTEGR 1055



 Score =  209 bits (533), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 110/206 (53%), Positives = 144/206 (69%), Gaps = 7/206 (3%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPK-IKAAQFDIVNH 191
           +D  DY  N  ++   Q  A ++ D   LF     ++   I DK++ K  + ++FD  N 
Sbjct: 366 VDDRDYVGNKRLELAGQLLALLFED---LFKTFNTNLKSAI-DKVLKKPSRTSEFDAFNT 421

Query: 192 MR--QDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
           M+   D IT     AI TGNW+++RFKMER GVT VLSRLSYIS LGMMTRI+SQFEKTR
Sbjct: 422 MQFQGDHITAGFVRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKTR 481

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHI 309
           KVSGPR+LQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT+ +E+ ++++++ +G+E I
Sbjct: 482 KVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDVEEEPLIRLVHALGVEDI 541

Query: 310 AMFNGEELSSPGVYLVFVNGILAGIT 335
            +  G E+     ++V VNG + GIT
Sbjct: 542 CLATGAEIYGQNSFVVHVNGAIIGIT 567



 Score =  166 bits (419), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 80/132 (60%), Positives = 96/132 (72%), Gaps = 15/132 (11%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKR 751
           FDDFL  G +EYLDVNE NDS+IA+ E  I P  TTHLEI PFT+LG  AG         
Sbjct: 639 FDDFLRRGLVEYLDVNEENDSYIALYEDMIVP-TTTHLEIEPFTILGAVAG--------- 688

Query: 752 FHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTI 811
                L+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ NRIDTL+Y +VY Q+PMV++K+I
Sbjct: 689 -----LIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLNRIDTLLYLMVYPQQPMVKTKSI 743

Query: 812 RITNFHKLPAGK 823
            +  + KLPAG+
Sbjct: 744 ELVGYDKLPAGQ 755



 Score =  100 bits (248), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 43/80 (53%), Positives = 64/80 (80%)

Query: 454 DDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELA 513
           ++A + L++  +AH+PV N+ F+ KA+++A M RR+++ L+D  M+DDRDY GNKRLELA
Sbjct: 321 EEAMEALATIVLAHVPVNNLDFRPKAIFIATMTRRVLMCLADEKMVDDRDYVGNKRLELA 380

Query: 514 GSLLSLMFEDVFKRFNSELK 533
           G LL+L+FED+FK FN+ LK
Sbjct: 381 GQLLALLFEDLFKTFNTNLK 400



 Score = 87.8 bits (216), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 43/98 (43%), Positives = 62/98 (63%), Gaps = 5/98 (5%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           + DKW L+ +FLK KGLVK H+DSF+YF++V+IK +++AN  + SDVDP F+LKY DI V
Sbjct: 35  VEDKWLLLPAFLKVKGLVKQHLDSFNYFVDVDIKNIVKANNKVTSDVDPRFWLKYTDIQV 94

Query: 172 GIADKIIPKIKAAQFDIVNH---MRQDTITNALTAAIQ 206
           G  D+    + A    +  H   +R  T +  +   IQ
Sbjct: 95  GFPDRT--DVDAVDRSVTPHECRLRDTTYSAPILVTIQ 130



 Score = 86.7 bits (213), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 39/58 (67%), Positives = 47/58 (81%)

Query: 354 RQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKTE 411
           R  TPHECRLRD TYSAPI V I+YTRG Q V+R ++ IGR+PIML+S+KCVL  +TE
Sbjct: 107 RSVTPHECRLRDTTYSAPILVTIQYTRGKQVVLRKNVNIGRLPIMLRSNKCVLTGRTE 164


>gi|301110510|ref|XP_002904335.1| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide
            [Phytophthora infestans T30-4]
 gi|262096461|gb|EEY54513.1| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide
            [Phytophthora infestans T30-4]
          Length = 1166

 Score =  321 bits (823), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 150/272 (55%), Positives = 199/272 (73%), Gaps = 11/272 (4%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I  NQ  RIDTL+Y +VY Q PMV+++ + + N
Sbjct: 693  GLIPYPHHNQSPRNTYQCAMGKQAIGTIAMNQFERIDTLLYTMVYPQMPMVKTRVLDLVN 752

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F ++PAGQNA +AVMSYSGYDIEDA+++NKASLDRGFGRC+V++  + ++K+Y N ++DR
Sbjct: 753  FDRVPAGQNAIVAVMSYSGYDIEDAIVLNKASLDRGFGRCMVFKKYQTMIKKYANGSYDR 812

Query: 1033 ILGP-----LLEADTRKPVYRH---RALDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            I+GP     L  A      +R+    +LD DGI   G  +    +++NK  PT    ++ 
Sbjct: 813  IVGPPDFDSLAAAGGAGMGFRNAKFSSLDADGISRVGGIVQNGAIMINKEQPTQFNDSVD 872

Query: 1085 MATP---EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1141
               P    Y   P +YKG +P+Y++KVL++S+  + FL+K+L+RQTRRPEIGDKFSSRHG
Sbjct: 873  GRDPLDVTYSPSPTTYKGPIPAYVDKVLLTSSEANHFLVKVLIRQTRRPEIGDKFSSRHG 932

Query: 1142 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            QKGV G I  QEDMPFN+ GICPD+IMNPHG 
Sbjct: 933  QKGVCGTIRNQEDMPFNDQGICPDLIMNPHGF 964



 Score =  275 bits (704), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 125/196 (63%), Positives = 156/196 (79%), Gaps = 5/196 (2%)

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
            Y   P +YKG +P+Y++KVL++S+  + FL+K+L+RQTRRPEIGDKFSSRHGQKGV G I
Sbjct: 881  YSPSPTTYKGPIPAYVDKVLLTSSEANHFLVKVLIRQTRRPEIGDKFSSRHGQKGVCGTI 940

Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFG----- 1296
              QEDMPFN+ GICPD+IMNPHG+PSRMTVGK+IEL+AGKAG++ G    GTAFG     
Sbjct: 941  RNQEDMPFNDQGICPDLIMNPHGFPSRMTVGKMIELIAGKAGVLTGRRAYGTAFGEKYGS 1000

Query: 1297 GTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSR 1356
               ++D   EL+++G+NY GKD   SGITGEA+E YI+ GP+YYQKLKHMV DK+HAR+R
Sbjct: 1001 ADHVLDCSRELVKNGFNYAGKDYLTSGITGEAIECYIFMGPIYYQKLKHMVMDKMHARAR 1060

Query: 1357 GPRVVLTRQPTGRRWK 1372
            GPR VLTRQPT  R +
Sbjct: 1061 GPRAVLTRQPTEGRSR 1076



 Score =  203 bits (517), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 101/205 (49%), Positives = 145/205 (70%), Gaps = 5/205 (2%)

Query: 130 KPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKI-KAAQFDI 188
           +  +D  DY+ N  ++   Q  + ++ D   LF     D+    AD ++ K  +A+ FDI
Sbjct: 368 RTRLDDKDYYGNKRLELAGQLLSLLFED---LFKRFNSDLKRQ-ADMVLSKPNRASVFDI 423

Query: 189 VNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKT 248
           +  +R DTIT     A+ TGNWT++RF+M+R GVT VLSRLSY+S LGMMTRI+SQFEKT
Sbjct: 424 LKCVRTDTITQGFYHALSTGNWTLKRFRMDRAGVTHVLSRLSYMSALGMMTRISSQFEKT 483

Query: 249 RKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEH 308
           RKVSGPRSLQ SQWGMLCP+DTPEGEACGLVKNLAL+ H+T++ +   + ++ +++G+  
Sbjct: 484 RKVSGPRSLQPSQWGMLCPADTPEGEACGLVKNLALLCHVTSDEEPAPIKRLCFDLGVTD 543

Query: 309 IAMFNGEELSSPGVYLVFVNGILAG 333
           +++ +GEE++    YLV +NG++ G
Sbjct: 544 VSLSSGEEINHASNYLVMLNGVIIG 568



 Score =  140 bits (354), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 69/139 (49%), Positives = 91/139 (65%), Gaps = 15/139 (10%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G +     + EG +EY+DVNE N+  +A+ ES I    TTHLEI P T+LGV +G     
Sbjct: 640 GVRDLSSLIVEGCVEYVDVNEENNCLVALHESEI-GDRTTHLEIDPVTILGVVSG----- 693

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQA+G I  NQ  RIDTL+Y +VY Q PMV+
Sbjct: 694 ---------LIPYPHHNQSPRNTYQCAMGKQAIGTIAMNQFERIDTLLYTMVYPQMPMVK 744

Query: 808 SKTIRITNFHKLPAGKCQI 826
           ++ + + NF ++PAG+  I
Sbjct: 745 TRVLDLVNFDRVPAGQNAI 763



 Score =  100 bits (248), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 45/81 (55%), Positives = 62/81 (76%)

Query: 453 VDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLEL 512
           VD AR  L++  + H+P  N  F++K++Y+A ++RR++    D   LDD+DYYGNKRLEL
Sbjct: 325 VDAARSALANLVLNHVPCDNFNFRLKSIYVAHIVRRILFTDKDRTRLDDKDYYGNKRLEL 384

Query: 513 AGSLLSLMFEDVFKRFNSELK 533
           AG LLSL+FED+FKRFNS+LK
Sbjct: 385 AGQLLSLLFEDLFKRFNSDLK 405



 Score = 78.6 bits (192), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/68 (50%), Positives = 49/68 (72%)

Query: 344 PEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSK 403
           P I+E    +   TPH+CRLRD TY+AP+ V + Y RG++ V  + ++IGR+PIML+SS+
Sbjct: 92  PSIDEEAFVSASVTPHQCRLRDRTYAAPVYVSVRYRRGNKIVTNNKVLIGRIPIMLRSSR 151

Query: 404 CVLRNKTE 411
           CVL  K+E
Sbjct: 152 CVLAGKSE 159



 Score = 76.6 bits (187), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/63 (52%), Positives = 49/63 (77%), Gaps = 2/63 (3%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANAN--IYSDVDPLFYLKYLDI 169
           ++DKWKL+  FL+ +GLVK HIDSFDYF +V+++ +++A AN  + SD DP F+L+Y DI
Sbjct: 28  VKDKWKLLPYFLQLRGLVKQHIDSFDYFTSVDMRNIVRAQANNVVRSDADPKFFLQYTDI 87

Query: 170 HVG 172
            +G
Sbjct: 88  QLG 90


>gi|302676710|ref|XP_003028038.1| hypothetical protein SCHCODRAFT_83253 [Schizophyllum commune H4-8]
 gi|300101726|gb|EFI93135.1| hypothetical protein SCHCODRAFT_83253 [Schizophyllum commune H4-8]
          Length = 1142

 Score =  321 bits (822), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 153/265 (57%), Positives = 195/265 (73%), Gaps = 6/265 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G IG+NQ NRIDTL+Y  VY Q+PMV++KTI +  
Sbjct: 683  GLIPYPHHNQSPRNTYQCAMGKQAIGAIGFNQLNRIDTLLYLSVYPQQPMVKTKTIELIG 742

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+AVMSYSGYDIEDALI+NKASLDRG+GRC V R +  ++++YPN T+DR
Sbjct: 743  YDKLPAGQNATVAVMSYSGYDIEDALILNKASLDRGYGRCQVLRKNATLVRKYPNGTYDR 802

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISV----SAISMATP 1088
            +    ++ +      ++  +  DG+   GE++    V VNK  PT +     +  + A P
Sbjct: 803  LADAPVD-ENGNIAKKYDIIQADGLAGVGERVDPGDVYVNKQSPTNATDNTFNGQAAAVP 861

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
             YK  P++YK  V   ++KVL+S    D  L+K+L+RQTRRPE+GDKFSSRHGQKGV GL
Sbjct: 862  -YKNTPLTYKSPVAGNIDKVLISDTENDQLLVKVLIRQTRRPELGDKFSSRHGQKGVCGL 920

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            IV QEDMPFN+ GI PD IMNPHG 
Sbjct: 921  IVNQEDMPFNDQGINPDTIMNPHGF 945



 Score =  275 bits (702), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 125/189 (66%), Positives = 152/189 (80%)

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
            YK  P++YK  V   ++KVL+S    D  L+K+L+RQTRRPE+GDKFSSRHGQKGV GLI
Sbjct: 862  YKNTPLTYKSPVAGNIDKVLISDTENDQLLVKVLIRQTRRPELGDKFSSRHGQKGVCGLI 921

Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
            V QEDMPFN+ GI PD IMNPHG+PSRMTVGK+IELLAGKAG++ G  + GTAFGG+K+ 
Sbjct: 922  VNQEDMPFNDQGINPDTIMNPHGFPSRMTVGKMIELLAGKAGVLTGKLQYGTAFGGSKVE 981

Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
            D+   LI +G++Y GKD+  SGITGE +EAY+Y GP+YYQKLKHMV DK+HAR+RGPR  
Sbjct: 982  DMSRILIENGFSYAGKDMLTSGITGEPMEAYVYFGPIYYQKLKHMVMDKMHARARGPRAT 1041

Query: 1362 LTRQPTGRR 1370
            LTRQPT  R
Sbjct: 1042 LTRQPTEGR 1050



 Score =  209 bits (532), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 110/206 (53%), Positives = 144/206 (69%), Gaps = 7/206 (3%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPK-IKAAQFDIVNH 191
           +D  DY  N  ++   Q  A ++ D   LF     ++   I DK++ K  +  +FD  N 
Sbjct: 361 VDDRDYVGNKRLELAGQLLALLFED---LFKTYCSNLKAAI-DKVLKKPSRTTEFDAYNT 416

Query: 192 M--RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
           M  + D IT     AI TGNW+++RF+MER GVT VLSRLS+IS LGMMTRI+SQFEKTR
Sbjct: 417 MMFQGDHITAGFVRAISTGNWSLKRFRMERAGVTHVLSRLSFISALGMMTRISSQFEKTR 476

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHI 309
           KVSGPR+LQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT+ DE+ ++++ Y +G+E I
Sbjct: 477 KVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDVDEEPIIRLAYLLGVEDI 536

Query: 310 AMFNGEELSSPGVYLVFVNGILAGIT 335
           A+ +G E+     ++V VNG + G+T
Sbjct: 537 ALASGSEIYGTHAFIVSVNGNIIGLT 562



 Score =  168 bits (425), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 82/136 (60%), Positives = 99/136 (72%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G   FDDFL +G +EYLDVNE ND++IA+ E+ I P  TTHLEI PFTLLG  AG     
Sbjct: 630 GAATFDDFLRKGLVEYLDVNEENDAYIALYEADIVP-TTTHLEIEPFTLLGAVAG----- 683

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQA+G IG+NQ NRIDTL+Y  VY Q+PMV+
Sbjct: 684 ---------LIPYPHHNQSPRNTYQCAMGKQAIGAIGFNQLNRIDTLLYLSVYPQQPMVK 734

Query: 808 SKTIRITNFHKLPAGK 823
           +KTI +  + KLPAG+
Sbjct: 735 TKTIELIGYDKLPAGQ 750



 Score = 85.1 bits (209), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 36/69 (52%), Positives = 53/69 (76%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           + DKW L+ +FLK KGLVK HIDSF++F++ +IK +++AN  I SDVDP F++K++DI V
Sbjct: 30  VEDKWLLLPAFLKVKGLVKQHIDSFNHFVDADIKNIVKANNKITSDVDPRFWIKFMDIEV 89

Query: 172 GIADKIIPK 180
           G  D+  P+
Sbjct: 90  GFPDRNEPE 98



 Score = 82.0 bits (201), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/67 (53%), Positives = 52/67 (77%)

Query: 467 HIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGSLLSLMFEDVFK 526
           H+ +  + F+ KA+++A M RR+++A+ D  M+DDRDY GNKRLELAG LL+L+FED+FK
Sbjct: 329 HVRMDGLDFRPKAIFVATMTRRVLMAMHDEKMVDDRDYVGNKRLELAGQLLALLFEDLFK 388

Query: 527 RFNSELK 533
            + S LK
Sbjct: 389 TYCSNLK 395



 Score = 79.3 bits (194), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/73 (54%), Positives = 54/73 (73%), Gaps = 2/73 (2%)

Query: 340 EVCKPEIEESFNYTRQT-TPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIM 398
           EV  P+  E   + +++ TPHECRLRD+TYSAPITV  +YTRG + +V+    IGR+PIM
Sbjct: 88  EVGFPDRNEPEAHDKKSITPHECRLRDITYSAPITVTFQYTRG-RSIVQRRQTIGRLPIM 146

Query: 399 LQSSKCVLRNKTE 411
           L+S+KCVL  +TE
Sbjct: 147 LRSNKCVLTGRTE 159


>gi|134055102|emb|CAK43742.1| unnamed protein product [Aspergillus niger]
          Length = 1225

 Score =  321 bits (822), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 152/266 (57%), Positives = 195/266 (73%), Gaps = 7/266 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I  NQ  RID+++Y +VY Q+PMV+S+TI +T 
Sbjct: 758  GLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVYPQKPMVKSRTIELTK 817

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + +LPAGQNA +AVMSYSGYDIEDAL++NK S+DRGFGRC V+R     LK Y N T DR
Sbjct: 818  YDQLPAGQNAIVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYVTNLKSYSNGTKDR 877

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSA----ISMATP 1088
            + GP  E D   P+ +H  L+ DG+ A GEQ+   +V +NKS P  S+S+         P
Sbjct: 878  LSGPTYENDA--PIRKHALLESDGLAAVGEQVNAGEVYINKSTPDQSMSSGFPNSDAGRP 935

Query: 1089 -EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
              Y   P++YK   P+Y++KV+VS    +  L+K+L RQTRRPE+GDKFSSRHGQKGV+G
Sbjct: 936  VSYMPTPMTYKLPDPAYIDKVMVSVTENENQLVKVLTRQTRRPEVGDKFSSRHGQKGVVG 995

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            +I +Q DMPF ++GI PDIIMNPHG 
Sbjct: 996  IIADQADMPFTDTGINPDIIMNPHGF 1021



 Score =  260 bits (664), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 125/231 (54%), Positives = 169/231 (73%), Gaps = 5/231 (2%)

Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHGLKGCD--RITEYKEVPVSYKGSVPSYLEKVL 1201
              +G  V   ++  N+S   PD  M+  G    D  R   Y   P++YK   P+Y++KV+
Sbjct: 901  AAVGEQVNAGEVYINKS--TPDQSMS-SGFPNSDAGRPVSYMPTPMTYKLPDPAYIDKVM 957

Query: 1202 VSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMN 1261
            VS    +  L+K+L RQTRRPE+GDKFSSRHGQKGV+G+I +Q DMPF ++GI PDIIMN
Sbjct: 958  VSVTENENQLVKVLTRQTRRPEVGDKFSSRHGQKGVVGIIADQADMPFTDTGINPDIIMN 1017

Query: 1262 PHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFY 1321
            PHG+PSRMTVGK++EL+AGKAG++ G +  GT FGG+ + ++ + LI +G++Y GKD   
Sbjct: 1018 PHGFPSRMTVGKMLELVAGKAGVLAGQHGYGTCFGGSPVQEMSQILIDNGFSYGGKDYLT 1077

Query: 1322 SGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
            SGITGEAL  Y+++GP+YYQKLKHMVQDK+H+R+RGPR +LTRQPT  R +
Sbjct: 1078 SGITGEALPFYVFTGPIYYQKLKHMVQDKMHSRARGPRAILTRQPTEGRSR 1128



 Score =  202 bits (513), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 105/205 (51%), Positives = 136/205 (66%), Gaps = 5/205 (2%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDI--VN 190
           +D  DY  N  ++   Q  A ++ D   LF     DI + I   +  + +A  FD   V 
Sbjct: 436 VDDRDYLGNKRLELAGQLLALLFED---LFKKFCFDIKMNIDKVLNKRNRAEAFDAYSVI 492

Query: 191 HMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRK 250
            M  + IT  +  AI TGNW+++RF+MER GVT VLSRLSYI+ LGMMTRI+SQFEKTRK
Sbjct: 493 TMHSNHITQGMNRAISTGNWSLKRFRMERAGVTHVLSRLSYIAALGMMTRISSQFEKTRK 552

Query: 251 VSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIA 310
           VSGPR+LQ SQ+GMLCP+DTPEGEACGLVKNLALMTHITT ++E  +  +++ +G E I 
Sbjct: 553 VSGPRALQPSQFGMLCPADTPEGEACGLVKNLALMTHITTNDEEGPVRNLIFMLGAEDIQ 612

Query: 311 MFNGEELSSPGVYLVFVNGILAGIT 335
              G+EL  PG Y + +NG    +T
Sbjct: 613 TVGGKELYGPGCYTISINGTPTALT 637



 Score =  157 bits (396), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 77/139 (55%), Positives = 97/139 (69%), Gaps = 15/139 (10%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G  +FDDFL +G +EYLDVNE NDS I++ E  I    TTHLEI PFT+LG  AG     
Sbjct: 705 GTMQFDDFLAQGLVEYLDVNEENDSLISIYEKDITE-TTTHLEIEPFTVLGAVAG----- 758

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQA+G I  NQ  RID+++Y +VY Q+PMV+
Sbjct: 759 ---------LIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVYPQKPMVK 809

Query: 808 SKTIRITNFHKLPAGKCQI 826
           S+TI +T + +LPAG+  I
Sbjct: 810 SRTIELTKYDQLPAGQNAI 828



 Score =  104 bits (259), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 50/104 (48%), Positives = 78/104 (75%), Gaps = 1/104 (0%)

Query: 439 KLRQKRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDM 498
           K+ +K+  +Y++T V +A + ++S  I+HI V NM F+ KA+Y+A M RR+++A +D  +
Sbjct: 376 KINRKQSPSYRRTHVQEAVEAIASVIISHIEVKNMNFRPKAVYVAHMARRVLMAKNDASL 435

Query: 499 LDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELKETNLSGVVN 542
           +DDRDY GNKRLELAG LL+L+FED+FK+F  ++K  N+  V+N
Sbjct: 436 VDDRDYLGNKRLELAGQLLALLFEDLFKKFCFDIK-MNIDKVLN 478



 Score = 87.8 bits (216), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 40/61 (65%), Positives = 47/61 (77%), Gaps = 1/61 (1%)

Query: 350 FNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNK 409
           F Y+   +P ECRLRD TY+API VD EY RG QRV+R  + IGRMP+ML+SSKCVL NK
Sbjct: 174 FTYS-TVSPQECRLRDTTYAAPIQVDFEYVRGRQRVMRKGVAIGRMPVMLRSSKCVLANK 232

Query: 410 T 410
           T
Sbjct: 233 T 233



 Score = 74.7 bits (182), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/61 (49%), Positives = 49/61 (80%)

Query: 113 RDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           +DKW L+ +FLK KGLVK HIDS++Y + V++KK++++++ I SDVD  FY+K+ +I++G
Sbjct: 100 KDKWNLLPAFLKVKGLVKQHIDSYNYLVEVQLKKIVESSSTIRSDVDHTFYIKFTNIYLG 159

Query: 173 I 173
            
Sbjct: 160 F 160


>gi|317025401|ref|XP_001388998.2| DNA-directed RNA polymerase III subunit RET1 [Aspergillus niger CBS
            513.88]
          Length = 1226

 Score =  321 bits (822), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 152/266 (57%), Positives = 195/266 (73%), Gaps = 7/266 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I  NQ  RID+++Y +VY Q+PMV+S+TI +T 
Sbjct: 759  GLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVYPQKPMVKSRTIELTK 818

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + +LPAGQNA +AVMSYSGYDIEDAL++NK S+DRGFGRC V+R     LK Y N T DR
Sbjct: 819  YDQLPAGQNAIVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYVTNLKSYSNGTKDR 878

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSA----ISMATP 1088
            + GP  E D   P+ +H  L+ DG+ A GEQ+   +V +NKS P  S+S+         P
Sbjct: 879  LSGPTYENDA--PIRKHALLESDGLAAVGEQVNAGEVYINKSTPDQSMSSGFPNSDAGRP 936

Query: 1089 -EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
              Y   P++YK   P+Y++KV+VS    +  L+K+L RQTRRPE+GDKFSSRHGQKGV+G
Sbjct: 937  VSYMPTPMTYKLPDPAYIDKVMVSVTENENQLVKVLTRQTRRPEVGDKFSSRHGQKGVVG 996

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            +I +Q DMPF ++GI PDIIMNPHG 
Sbjct: 997  IIADQADMPFTDTGINPDIIMNPHGF 1022



 Score =  260 bits (664), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 125/231 (54%), Positives = 169/231 (73%), Gaps = 5/231 (2%)

Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHGLKGCD--RITEYKEVPVSYKGSVPSYLEKVL 1201
              +G  V   ++  N+S   PD  M+  G    D  R   Y   P++YK   P+Y++KV+
Sbjct: 902  AAVGEQVNAGEVYINKS--TPDQSMS-SGFPNSDAGRPVSYMPTPMTYKLPDPAYIDKVM 958

Query: 1202 VSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMN 1261
            VS    +  L+K+L RQTRRPE+GDKFSSRHGQKGV+G+I +Q DMPF ++GI PDIIMN
Sbjct: 959  VSVTENENQLVKVLTRQTRRPEVGDKFSSRHGQKGVVGIIADQADMPFTDTGINPDIIMN 1018

Query: 1262 PHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFY 1321
            PHG+PSRMTVGK++EL+AGKAG++ G +  GT FGG+ + ++ + LI +G++Y GKD   
Sbjct: 1019 PHGFPSRMTVGKMLELVAGKAGVLAGQHGYGTCFGGSPVQEMSQILIDNGFSYGGKDYLT 1078

Query: 1322 SGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
            SGITGEAL  Y+++GP+YYQKLKHMVQDK+H+R+RGPR +LTRQPT  R +
Sbjct: 1079 SGITGEALPFYVFTGPIYYQKLKHMVQDKMHSRARGPRAILTRQPTEGRSR 1129



 Score =  202 bits (513), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 105/205 (51%), Positives = 136/205 (66%), Gaps = 5/205 (2%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDI--VN 190
           +D  DY  N  ++   Q  A ++ D   LF     DI + I   +  + +A  FD   V 
Sbjct: 437 VDDRDYLGNKRLELAGQLLALLFED---LFKKFCFDIKMNIDKVLNKRNRAEAFDAYSVI 493

Query: 191 HMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRK 250
            M  + IT  +  AI TGNW+++RF+MER GVT VLSRLSYI+ LGMMTRI+SQFEKTRK
Sbjct: 494 TMHSNHITQGMNRAISTGNWSLKRFRMERAGVTHVLSRLSYIAALGMMTRISSQFEKTRK 553

Query: 251 VSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIA 310
           VSGPR+LQ SQ+GMLCP+DTPEGEACGLVKNLALMTHITT ++E  +  +++ +G E I 
Sbjct: 554 VSGPRALQPSQFGMLCPADTPEGEACGLVKNLALMTHITTNDEEGPVRNLIFMLGAEDIQ 613

Query: 311 MFNGEELSSPGVYLVFVNGILAGIT 335
              G+EL  PG Y + +NG    +T
Sbjct: 614 TVGGKELYGPGCYTISINGTPTALT 638



 Score =  157 bits (396), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 77/139 (55%), Positives = 97/139 (69%), Gaps = 15/139 (10%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G  +FDDFL +G +EYLDVNE NDS I++ E  I    TTHLEI PFT+LG  AG     
Sbjct: 706 GTMQFDDFLAQGLVEYLDVNEENDSLISIYEKDITE-TTTHLEIEPFTVLGAVAG----- 759

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQA+G I  NQ  RID+++Y +VY Q+PMV+
Sbjct: 760 ---------LIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVYPQKPMVK 810

Query: 808 SKTIRITNFHKLPAGKCQI 826
           S+TI +T + +LPAG+  I
Sbjct: 811 SRTIELTKYDQLPAGQNAI 829



 Score =  103 bits (258), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 50/104 (48%), Positives = 78/104 (75%), Gaps = 1/104 (0%)

Query: 439 KLRQKRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDM 498
           K+ +K+  +Y++T V +A + ++S  I+HI V NM F+ KA+Y+A M RR+++A +D  +
Sbjct: 377 KINRKQSPSYRRTHVQEAVEAIASVIISHIEVKNMNFRPKAVYVAHMARRVLMAKNDASL 436

Query: 499 LDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELKETNLSGVVN 542
           +DDRDY GNKRLELAG LL+L+FED+FK+F  ++K  N+  V+N
Sbjct: 437 VDDRDYLGNKRLELAGQLLALLFEDLFKKFCFDIK-MNIDKVLN 479



 Score = 87.8 bits (216), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 40/61 (65%), Positives = 47/61 (77%), Gaps = 1/61 (1%)

Query: 350 FNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNK 409
           F Y+   +P ECRLRD TY+API VD EY RG QRV+R  + IGRMP+ML+SSKCVL NK
Sbjct: 175 FTYS-TVSPQECRLRDTTYAAPIQVDFEYVRGRQRVMRKGVAIGRMPVMLRSSKCVLANK 233

Query: 410 T 410
           T
Sbjct: 234 T 234



 Score = 74.7 bits (182), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/61 (49%), Positives = 49/61 (80%)

Query: 113 RDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           +DKW L+ +FLK KGLVK HIDS++Y + V++KK++++++ I SDVD  FY+K+ +I++G
Sbjct: 101 KDKWNLLPAFLKVKGLVKQHIDSYNYLVEVQLKKIVESSSTIRSDVDHTFYIKFTNIYLG 160

Query: 173 I 173
            
Sbjct: 161 F 161


>gi|358366889|dbj|GAA83509.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Aspergillus
            kawachii IFO 4308]
          Length = 1233

 Score =  321 bits (822), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 152/266 (57%), Positives = 195/266 (73%), Gaps = 7/266 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I  NQ  RID+++Y +VY Q+PMV+S+TI +T 
Sbjct: 766  GLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVYPQKPMVKSRTIELTK 825

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + +LPAGQNA +AVMSYSGYDIEDAL++NK S+DRGFGRC V+R     LK Y N T DR
Sbjct: 826  YDQLPAGQNAIVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYVTNLKSYSNGTKDR 885

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSA----ISMATP 1088
            + GP  E D   P+ +H  L+ DG+ A GEQ+   +V +NKS P  S+S+         P
Sbjct: 886  LSGPTYENDA--PIRKHALLESDGLAAVGEQVNAGEVYINKSTPDQSMSSGFPNSDAGRP 943

Query: 1089 -EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
              Y   P++YK   P+Y++KV+VS    +  L+K+L RQTRRPE+GDKFSSRHGQKGV+G
Sbjct: 944  VSYMPTPMTYKLPDPAYIDKVMVSVTENENQLVKVLTRQTRRPEVGDKFSSRHGQKGVVG 1003

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            +I +Q DMPF ++GI PDIIMNPHG 
Sbjct: 1004 IIADQADMPFTDTGINPDIIMNPHGF 1029



 Score =  259 bits (663), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 125/231 (54%), Positives = 169/231 (73%), Gaps = 5/231 (2%)

Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHGLKGCD--RITEYKEVPVSYKGSVPSYLEKVL 1201
              +G  V   ++  N+S   PD  M+  G    D  R   Y   P++YK   P+Y++KV+
Sbjct: 909  AAVGEQVNAGEVYINKS--TPDQSMS-SGFPNSDAGRPVSYMPTPMTYKLPDPAYIDKVM 965

Query: 1202 VSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMN 1261
            VS    +  L+K+L RQTRRPE+GDKFSSRHGQKGV+G+I +Q DMPF ++GI PDIIMN
Sbjct: 966  VSVTENENQLVKVLTRQTRRPEVGDKFSSRHGQKGVVGIIADQADMPFTDTGINPDIIMN 1025

Query: 1262 PHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFY 1321
            PHG+PSRMTVGK++EL+AGKAG++ G +  GT FGG+ + ++ + LI +G++Y GKD   
Sbjct: 1026 PHGFPSRMTVGKMLELVAGKAGVLAGQHGYGTCFGGSPVQEMSQILIDNGFSYGGKDYLT 1085

Query: 1322 SGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
            SGITGEAL  Y+++GP+YYQKLKHMVQDK+H+R+RGPR +LTRQPT  R +
Sbjct: 1086 SGITGEALPFYVFTGPIYYQKLKHMVQDKMHSRARGPRAILTRQPTEGRSR 1136



 Score =  202 bits (514), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 105/205 (51%), Positives = 136/205 (66%), Gaps = 5/205 (2%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDI--VN 190
           +D  DY  N  ++   Q  A ++ D   LF     DI + I   +  + +A  FD   V 
Sbjct: 444 VDDRDYLGNKRLELAGQLLALLFED---LFKKFCFDIKMNIDKVLNKRNRAEAFDAYSVI 500

Query: 191 HMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRK 250
            M  + IT  +  AI TGNW+++RF+MER GVT VLSRLSYI+ LGMMTRI+SQFEKTRK
Sbjct: 501 TMHSNHITQGMNRAISTGNWSLKRFRMERAGVTHVLSRLSYIAALGMMTRISSQFEKTRK 560

Query: 251 VSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIA 310
           VSGPR+LQ SQ+GMLCP+DTPEGEACGLVKNLALMTHITT ++E  +  +++ +G E I 
Sbjct: 561 VSGPRALQPSQFGMLCPADTPEGEACGLVKNLALMTHITTNDEEGPIRNLIFMLGAEDIQ 620

Query: 311 MFNGEELSSPGVYLVFVNGILAGIT 335
              G+EL  PG Y + +NG    +T
Sbjct: 621 TVGGKELYGPGCYTISINGTPTALT 645



 Score =  157 bits (396), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 77/139 (55%), Positives = 97/139 (69%), Gaps = 15/139 (10%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G  +FDDFL +G +EYLDVNE NDS I++ E  I    TTHLEI PFT+LG  AG     
Sbjct: 713 GTMQFDDFLAQGLVEYLDVNEENDSLISIYEKDITE-TTTHLEIEPFTVLGAVAG----- 766

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQA+G I  NQ  RID+++Y +VY Q+PMV+
Sbjct: 767 ---------LIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVYPQKPMVK 817

Query: 808 SKTIRITNFHKLPAGKCQI 826
           S+TI +T + +LPAG+  I
Sbjct: 818 SRTIELTKYDQLPAGQNAI 836



 Score =  103 bits (258), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 50/104 (48%), Positives = 78/104 (75%), Gaps = 1/104 (0%)

Query: 439 KLRQKRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDM 498
           K+ +K+  +Y++T V +A + ++S  I+HI V NM F+ KA+Y+A M RR+++A +D  +
Sbjct: 384 KINRKQSPSYRRTHVQEAVEAIASVIISHIEVKNMNFRPKAVYVAHMARRVLMAKNDASL 443

Query: 499 LDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELKETNLSGVVN 542
           +DDRDY GNKRLELAG LL+L+FED+FK+F  ++K  N+  V+N
Sbjct: 444 VDDRDYLGNKRLELAGQLLALLFEDLFKKFCFDIK-MNIDKVLN 486



 Score = 87.4 bits (215), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 40/61 (65%), Positives = 47/61 (77%), Gaps = 1/61 (1%)

Query: 350 FNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNK 409
           F Y+   +P ECRLRD TY+API VD EY RG QRV+R  + IGRMP+ML+SSKCVL NK
Sbjct: 182 FTYS-TVSPQECRLRDTTYAAPIQVDFEYVRGRQRVMRKGVAIGRMPVMLRSSKCVLANK 240

Query: 410 T 410
           T
Sbjct: 241 T 241



 Score = 74.7 bits (182), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 49/60 (81%)

Query: 113 RDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           +DKW L+ +FLK KGLVK HIDS++Y + V++KK++++++ I SDVD  FY+K+ +I++G
Sbjct: 108 KDKWNLLPAFLKVKGLVKQHIDSYNYLVEVQLKKIVESSSTIRSDVDHTFYIKFTNIYLG 167


>gi|348667429|gb|EGZ07254.1| hypothetical protein PHYSODRAFT_340380 [Phytophthora sojae]
          Length = 1158

 Score =  320 bits (821), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 148/272 (54%), Positives = 198/272 (72%), Gaps = 11/272 (4%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I  NQ  RIDTL+Y +VY Q PMV+++ + + N
Sbjct: 685  GLIPYPHHNQSPRNTYQCAMGKQAIGTIAMNQFERIDTLLYTMVYPQMPMVKTRVLDLVN 744

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F ++PAGQNA +AVMSYSGYDIEDA+++NKASLDRGFGRC+V++  + ++K+Y N ++DR
Sbjct: 745  FDRVPAGQNAIVAVMSYSGYDIEDAIVLNKASLDRGFGRCMVFKKYQTMIKKYANGSYDR 804

Query: 1033 ILGPLLEADTRKP--------VYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            I+GP        P          ++ +LD DGI   G  +    +++NK  PT    ++ 
Sbjct: 805  IVGPPDFDSLAAPGGAGMGFRNAKYSSLDADGISRVGGIVQNGAIMINKEQPTQFNDSVD 864

Query: 1085 MATP---EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1141
               P    Y   P +YKG +P+Y++KVL++S+  + FL+K+L+RQTRRPEIGDKFSSRHG
Sbjct: 865  GRDPLDVTYSPSPTTYKGPIPAYVDKVLLTSSEANHFLVKVLIRQTRRPEIGDKFSSRHG 924

Query: 1142 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            QKGV G I +QEDMPFN+ GICPD+IMNPHG 
Sbjct: 925  QKGVCGTIRQQEDMPFNDQGICPDLIMNPHGF 956



 Score =  273 bits (699), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 124/196 (63%), Positives = 156/196 (79%), Gaps = 5/196 (2%)

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
            Y   P +YKG +P+Y++KVL++S+  + FL+K+L+RQTRRPEIGDKFSSRHGQKGV G I
Sbjct: 873  YSPSPTTYKGPIPAYVDKVLLTSSEANHFLVKVLIRQTRRPEIGDKFSSRHGQKGVCGTI 932

Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFG----- 1296
             +QEDMPFN+ GICPD+IMNPHG+PSRMTVGK+IEL+AGKAG++ G    GTAFG     
Sbjct: 933  RQQEDMPFNDQGICPDLIMNPHGFPSRMTVGKMIELIAGKAGVLTGRRAYGTAFGEKYGS 992

Query: 1297 GTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSR 1356
               ++D   EL+++G+NY GKD   SGITGE +E YI+ GP+YYQKLKHMV DK+HAR+R
Sbjct: 993  ADHVLDCSRELVKNGFNYAGKDYLTSGITGEPIECYIFMGPIYYQKLKHMVMDKMHARAR 1052

Query: 1357 GPRVVLTRQPTGRRWK 1372
            GPR VLTRQPT  R +
Sbjct: 1053 GPRAVLTRQPTEGRSR 1068



 Score =  204 bits (518), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 101/205 (49%), Positives = 145/205 (70%), Gaps = 5/205 (2%)

Query: 130 KPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKI-KAAQFDI 188
           +  +D  DY+ N  ++   Q  + ++ D   LF     D+    AD ++ K  +A+ FDI
Sbjct: 360 RTRLDDKDYYGNKRLELAGQLLSLLFED---LFKRFNSDLKRQ-ADMVLSKPNRASVFDI 415

Query: 189 VNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKT 248
           +  +R DTIT     A+ TGNWT++RF+M+R GVT VLSRLSY+S LGMMTRI+SQFEKT
Sbjct: 416 IKCVRTDTITQGFYHALSTGNWTLKRFRMDRAGVTHVLSRLSYMSALGMMTRISSQFEKT 475

Query: 249 RKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEH 308
           RKVSGPRSLQ SQWGMLCP+DTPEGEACGLVKNLAL+ H+T++ +   + ++ +++G+  
Sbjct: 476 RKVSGPRSLQPSQWGMLCPADTPEGEACGLVKNLALLCHVTSDEEPGPIKRLCFDLGVTD 535

Query: 309 IAMFNGEELSSPGVYLVFVNGILAG 333
           +++ +GEE++    YLV +NG++ G
Sbjct: 536 VSLSSGEEINHASNYLVMLNGVIIG 560



 Score =  139 bits (349), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 68/139 (48%), Positives = 90/139 (64%), Gaps = 15/139 (10%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G +     + EG +EY+DVNE N+  + + ES I    TTHLEI P T+LGV +G     
Sbjct: 632 GVRDLSSLIVEGCVEYVDVNEENNCLVTLHESEI-GDRTTHLEIDPVTILGVVSG----- 685

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQA+G I  NQ  RIDTL+Y +VY Q PMV+
Sbjct: 686 ---------LIPYPHHNQSPRNTYQCAMGKQAIGTIAMNQFERIDTLLYTMVYPQMPMVK 736

Query: 808 SKTIRITNFHKLPAGKCQI 826
           ++ + + NF ++PAG+  I
Sbjct: 737 TRVLDLVNFDRVPAGQNAI 755



 Score =  100 bits (248), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 45/81 (55%), Positives = 62/81 (76%)

Query: 453 VDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLEL 512
           VD AR  L++  + H+P  N  F++K++Y+A ++RR++    D   LDD+DYYGNKRLEL
Sbjct: 317 VDAARSALANLVLNHVPCENFNFRLKSIYVAHIVRRILFTDKDRTRLDDKDYYGNKRLEL 376

Query: 513 AGSLLSLMFEDVFKRFNSELK 533
           AG LLSL+FED+FKRFNS+LK
Sbjct: 377 AGQLLSLLFEDLFKRFNSDLK 397



 Score = 78.6 bits (192), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 34/68 (50%), Positives = 49/68 (72%)

Query: 344 PEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSK 403
           P I+E    +   TPH+CRLRD TY+AP+ V + Y RG++ V  + ++IGR+PIML+SS+
Sbjct: 84  PSIDEEAFVSASVTPHQCRLRDRTYAAPVYVSVRYRRGNKIVTNNKVLIGRIPIMLRSSR 143

Query: 404 CVLRNKTE 411
           CVL  K+E
Sbjct: 144 CVLAGKSE 151



 Score = 75.9 bits (185), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/63 (52%), Positives = 49/63 (77%), Gaps = 2/63 (3%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANAN--IYSDVDPLFYLKYLDI 169
           ++DKWKL+  FL+ +GLVK HIDSFDYF +V+++ +++A AN  + SD DP F+L+Y DI
Sbjct: 20  VQDKWKLLPYFLQLRGLVKQHIDSFDYFTSVDMRNIVRAQANNVVRSDADPKFFLQYTDI 79

Query: 170 HVG 172
            +G
Sbjct: 80  QLG 82


>gi|345568411|gb|EGX51305.1| hypothetical protein AOL_s00054g375 [Arthrobotrys oligospora ATCC
            24927]
          Length = 1166

 Score =  320 bits (821), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 149/265 (56%), Positives = 200/265 (75%), Gaps = 5/265 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+P+PHHNQ+PRNTYQCAMGKQA+G I YNQ  RIDTL+Y +VY Q+PMV+++TI +  
Sbjct: 700  GLIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFLRIDTLLYLMVYPQQPMVKTRTIELIK 759

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNA +AVMSYSGYDIEDAL++NK+S+DRGFGRC V R     LK++PNQT DR
Sbjct: 760  YDKLPAGQNAVVAVMSYSGYDIEDALVLNKSSVDRGFGRCQVLRKYVTTLKKHPNQTMDR 819

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATP---- 1088
            I G     +   P+ +HR ++ DG+ A GE+I + +  + K +PT + +  +        
Sbjct: 820  I-GDRKSDEEGNPIKKHRIIEGDGLAAVGERIEQGESYILKQVPTHTANNPAEGPQNRLG 878

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
            +YK+  ++YK + P+Y++KV++S +  +  +IK+L RQTRRPE+GDKFSSRHGQKGV G+
Sbjct: 879  DYKDAAMNYKLTDPAYIDKVMISCSESEQTIIKVLTRQTRRPELGDKFSSRHGQKGVCGI 938

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            IV+QEDMPFN+ G CPDIIMNPHG 
Sbjct: 939  IVQQEDMPFNDFGTCPDIIMNPHGF 963



 Score =  289 bits (740), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 129/196 (65%), Positives = 166/196 (84%)

Query: 1177 DRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKG 1236
            +R+ +YK+  ++YK + P+Y++KV++S +  +  +IK+L RQTRRPE+GDKFSSRHGQKG
Sbjct: 875  NRLGDYKDAAMNYKLTDPAYIDKVMISCSESEQTIIKVLTRQTRRPELGDKFSSRHGQKG 934

Query: 1237 VIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFG 1296
            V G+IV+QEDMPFN+ G CPDIIMNPHG+PSRMTVGK+IELLAGKAG++ GN + GTAFG
Sbjct: 935  VCGIIVQQEDMPFNDFGTCPDIIMNPHGFPSRMTVGKMIELLAGKAGVLSGNLQYGTAFG 994

Query: 1297 GTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSR 1356
            G+K+ D+ E LI HG+NY GKD   SGITGE+L+AYI+ GP+YYQKLKHMVQDK+H+R+R
Sbjct: 995  GSKVQDMSEILISHGFNYSGKDFVTSGITGESLQAYIFFGPIYYQKLKHMVQDKMHSRAR 1054

Query: 1357 GPRVVLTRQPTGRRWK 1372
            GPR VLTRQPT  R +
Sbjct: 1055 GPRAVLTRQPTEGRSR 1070



 Score =  210 bits (535), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 111/206 (53%), Positives = 147/206 (71%), Gaps = 7/206 (3%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKI-KAAQFDIVNH 191
           +D  DY  N  ++   Q  + ++ D   LF     ++ + I DKI+ K  +  +FD  N 
Sbjct: 378 VDDRDYVGNKRLELAGQLLSLLFED---LFKRFNGELKMNI-DKILKKPNRTEEFDAYNI 433

Query: 192 M--RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
           +     TIT  +  AI TGNW+++RFKMER GVT VLSRLSYIS LGMMTRI+SQFEKTR
Sbjct: 434 LSGHGHTITQGMNRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKTR 493

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHI 309
           KVSGPR+LQ SQ+GMLCPSDTPEGEACGLVKNLALMTHITT++DE++++++   +G E +
Sbjct: 494 KVSGPRALQPSQFGMLCPSDTPEGEACGLVKNLALMTHITTDDDEEHVIRLAMVLGAEDV 553

Query: 310 AMFNGEELSSPGVYLVFVNGILAGIT 335
              +G+EL +PG Y++F+NG   GIT
Sbjct: 554 LAVSGQELYAPGAYVIFMNGTPFGIT 579



 Score =  157 bits (398), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 76/136 (55%), Positives = 96/136 (70%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G   F+DFL +G +EY+DVNE ND+HIA+ E  I    TTHLEI PFT+LG  AG     
Sbjct: 647 GKMTFEDFLKKGLVEYVDVNEENDAHIAIYEHEISAS-TTHLEIEPFTILGAVAG----- 700

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+P+PHHNQ+PRNTYQCAMGKQA+G I YNQ  RIDTL+Y +VY Q+PMV+
Sbjct: 701 ---------LIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFLRIDTLLYLMVYPQQPMVK 751

Query: 808 SKTIRITNFHKLPAGK 823
           ++TI +  + KLPAG+
Sbjct: 752 TRTIELIKYDKLPAGQ 767



 Score =  113 bits (282), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 49/91 (53%), Positives = 73/91 (80%)

Query: 443 KRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDR 502
           ++  T +K+   +A + L++  +AH+PV N+ F+ KA+Y+AVM RR+++A+++P ++DDR
Sbjct: 322 RKILTTRKSYAHEALEALATIVLAHVPVKNLNFRPKALYIAVMTRRILMAMANPQLVDDR 381

Query: 503 DYYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
           DY GNKRLELAG LLSL+FED+FKRFN ELK
Sbjct: 382 DYVGNKRLELAGQLLSLLFEDLFKRFNGELK 412



 Score = 83.6 bits (205), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 34/64 (53%), Positives = 53/64 (82%)

Query: 113 RDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           +DKW L+ +FLK KGLVK H+DSF+YF +VE+K++++AN  + S+VDP F+L+Y+DI VG
Sbjct: 50  KDKWALLPAFLKVKGLVKQHLDSFNYFCDVELKQIIKANEMVVSEVDPNFFLRYVDIRVG 109

Query: 173 IADK 176
           + ++
Sbjct: 110 LPER 113



 Score = 82.0 bits (201), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/69 (53%), Positives = 53/69 (76%), Gaps = 1/69 (1%)

Query: 344 PEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSK 403
           PE ++S +     TP+ECRLRD+TY+AP+ VDI+Y RG   + R+ + IGR+PIML+S+K
Sbjct: 111 PERQDS-DSDADITPNECRLRDMTYAAPVFVDIQYVRGKAVIARNGVNIGRLPIMLRSNK 169

Query: 404 CVLRNKTEY 412
           CVL NK+E+
Sbjct: 170 CVLTNKSEH 178


>gi|395327723|gb|EJF60120.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
            [Dichomitus squalens LYAD-421 SS1]
          Length = 1142

 Score =  320 bits (821), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 153/264 (57%), Positives = 193/264 (73%), Gaps = 4/264 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G IGYNQ NRIDTL+Y  VY Q+PMV++KTI +  
Sbjct: 683  GLIPYPHHNQSPRNTYQCAMGKQAIGAIGYNQLNRIDTLLYLSVYPQQPMVKTKTIELIG 742

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + +LPAGQNAT+AVMSYSGYDIEDALI+NKASLDRG+GRC V R +  ++++YPN T DR
Sbjct: 743  YDRLPAGQNATVAVMSYSGYDIEDALILNKASLDRGYGRCQVLRKNATLIRKYPNGTFDR 802

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPE 1089
            +    L+ + +    ++  +  DG+   GE++    V +NK  PT +         AT  
Sbjct: 803  LADAPLDENGQVQ-KKYDIVQTDGLAGVGERVDPGDVYINKQTPTNANDNSFTGQAATVP 861

Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
            YK  P++YK  V   ++KV+V+    D  LIK+L+RQTRRPE+GDKFSSRHGQKGV GLI
Sbjct: 862  YKNTPMTYKSPVAGQIDKVMVTDTENDQTLIKVLIRQTRRPELGDKFSSRHGQKGVCGLI 921

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
            V QEDMPFN+ GI PD IMNPHG 
Sbjct: 922  VNQEDMPFNDQGIVPDTIMNPHGF 945



 Score =  275 bits (703), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 127/202 (62%), Positives = 155/202 (76%)

Query: 1169 NPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKF 1228
            N +   G      YK  P++YK  V   ++KV+V+    D  LIK+L+RQTRRPE+GDKF
Sbjct: 849  NDNSFTGQAATVPYKNTPMTYKSPVAGQIDKVMVTDTENDQTLIKVLIRQTRRPELGDKF 908

Query: 1229 SSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGN 1288
            SSRHGQKGV GLIV QEDMPFN+ GI PD IMNPHG+PSRMTVGK+IELLAGKAG++ G 
Sbjct: 909  SSRHGQKGVCGLIVNQEDMPFNDQGIVPDTIMNPHGFPSRMTVGKMIELLAGKAGVLAGK 968

Query: 1289 YKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQ 1348
             + GTAFGG+K+ D+   L+ +G++Y GKD+  SGITGE LEAY+Y GP+YYQKLKHMV 
Sbjct: 969  LQYGTAFGGSKVEDMSRILVENGFSYAGKDMLTSGITGEPLEAYVYFGPIYYQKLKHMVM 1028

Query: 1349 DKIHARSRGPRVVLTRQPTGRR 1370
            DK+HAR+RGPR  LTRQPT  R
Sbjct: 1029 DKMHARARGPRATLTRQPTEGR 1050



 Score =  210 bits (534), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 109/206 (52%), Positives = 145/206 (70%), Gaps = 7/206 (3%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPK-IKAAQFDIVNH 191
           +D  DY  N  ++   Q  A ++ D   LF     ++   I DK++ K  + ++FD  N 
Sbjct: 361 VDDRDYVGNKRLELAGQLLALLFED---LFKTFNANLKAAI-DKVLKKPSRTSEFDAFNT 416

Query: 192 MR--QDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
           M+   D IT     AI TGNW+++RFKM+R GVT VLSRLS+IS LGMMTRI+SQFEKTR
Sbjct: 417 MQFQGDHITAGFVRAISTGNWSLKRFKMDRAGVTHVLSRLSFISALGMMTRISSQFEKTR 476

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHI 309
           KVSGPR+LQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT+ +E+ +++I + +G+E I
Sbjct: 477 KVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDVEEEPIIRIAFMLGVEDI 536

Query: 310 AMFNGEELSSPGVYLVFVNGILAGIT 335
           ++  G E+  P  ++V VNG + G+T
Sbjct: 537 SLATGAEIYGPHTFVVNVNGSIIGLT 562



 Score =  171 bits (432), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 83/132 (62%), Positives = 98/132 (74%), Gaps = 15/132 (11%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKR 751
           FDDFL +G +EYLDVNE NDS+IA+ E  I PG TTHLEI PFTLLG  AG         
Sbjct: 634 FDDFLRKGLVEYLDVNEENDSYIALYEKDIVPG-TTHLEIEPFTLLGAVAG--------- 683

Query: 752 FHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTI 811
                L+PYPHHNQ+PRNTYQCAMGKQA+G IGYNQ NRIDTL+Y  VY Q+PMV++KTI
Sbjct: 684 -----LIPYPHHNQSPRNTYQCAMGKQAIGAIGYNQLNRIDTLLYLSVYPQQPMVKTKTI 738

Query: 812 RITNFHKLPAGK 823
            +  + +LPAG+
Sbjct: 739 ELIGYDRLPAGQ 750



 Score = 97.8 bits (242), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 42/80 (52%), Positives = 63/80 (78%)

Query: 454 DDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELA 513
           ++A + L++  +AH+PV  + F+ KA+++A M RR+++A+ D  M+DDRDY GNKRLELA
Sbjct: 316 EEALEALATIVLAHVPVHGLDFRPKAVFVATMTRRVLMAMDDEKMVDDRDYVGNKRLELA 375

Query: 514 GSLLSLMFEDVFKRFNSELK 533
           G LL+L+FED+FK FN+ LK
Sbjct: 376 GQLLALLFEDLFKTFNANLK 395



 Score = 87.8 bits (216), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 38/65 (58%), Positives = 51/65 (78%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           + DKW L+ +FLK KGLVK HIDSF+YF++V+IK +++AN  + SDVDP F+LKY DI V
Sbjct: 30  VEDKWLLLPAFLKVKGLVKQHIDSFNYFVDVDIKNILKANNKVTSDVDPRFWLKYTDIVV 89

Query: 172 GIADK 176
           G  D+
Sbjct: 90  GFPDR 94



 Score = 81.3 bits (199), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 37/68 (54%), Positives = 49/68 (72%)

Query: 344 PEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSK 403
           P+  ++    +  TPHECRLRD TYSAPI V I+YTRG   V R+++ IGR+PIML+S+K
Sbjct: 92  PDRTDADAIDKSVTPHECRLRDTTYSAPILVTIQYTRGKTVVRRANVNIGRLPIMLRSNK 151

Query: 404 CVLRNKTE 411
           CVL  + E
Sbjct: 152 CVLTGRNE 159


>gi|409043140|gb|EKM52623.1| hypothetical protein PHACADRAFT_100019 [Phanerochaete carnosa
            HHB-10118-sp]
          Length = 1141

 Score =  320 bits (821), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 155/265 (58%), Positives = 193/265 (72%), Gaps = 6/265 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G IGYNQQ+RIDTL+Y  VY Q+PMV++KTI +  
Sbjct: 681  GLIPYPHHNQSPRNTYQCAMGKQAIGAIGYNQQSRIDTLLYLSVYPQQPMVKTKTIELIG 740

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + +LPAGQNAT+AVMSYSGYDIEDALI NKASLDRG+GR  V R +  ++++YPN T+DR
Sbjct: 741  YDRLPAGQNATVAVMSYSGYDIEDALIQNKASLDRGYGRVQVLRKNATLIRKYPNGTYDR 800

Query: 1033 IL-GPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAI---SMATP 1088
            +   P+ E    +  Y    +  DG+   GE++    V +NK  PT +         AT 
Sbjct: 801  LADAPVDEGSQIQKKY--DIIQADGLAGVGERVDPGDVYINKQTPTNANDNTFTGQAATV 858

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
             YK  P++YK  V  Y++KV+V+    D  LIK+L+RQTRRPE+GDKFSSRHGQKGV GL
Sbjct: 859  PYKNSPMTYKSPVAGYIDKVMVTDTENDQTLIKVLIRQTRRPELGDKFSSRHGQKGVCGL 918

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            IV QEDMPFN+ GI PD IMNPHG 
Sbjct: 919  IVNQEDMPFNDQGIVPDTIMNPHGF 943



 Score =  267 bits (682), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 125/203 (61%), Positives = 154/203 (75%), Gaps = 1/203 (0%)

Query: 1169 NPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKF 1228
            N +   G      YK  P++YK  V  Y++KV+V+    D  LIK+L+RQTRRPE+GDKF
Sbjct: 847  NDNTFTGQAATVPYKNSPMTYKSPVAGYIDKVMVTDTENDQTLIKVLIRQTRRPELGDKF 906

Query: 1229 SSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGN 1288
            SSRHGQKGV GLIV QEDMPFN+ GI PD IMNPHG+PSRMTVGK+IELLAGKAG++ G 
Sbjct: 907  SSRHGQKGVCGLIVNQEDMPFNDQGIVPDTIMNPHGFPSRMTVGKMIELLAGKAGVLAGK 966

Query: 1289 YKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQ-KLKHMV 1347
             + GTAFGG+K+ D+   L+ +G++Y GKD+  SGITGE +EAY+Y GP+YYQ  L HMV
Sbjct: 967  LQYGTAFGGSKVEDMSRILVENGFSYAGKDMLTSGITGEPMEAYVYFGPIYYQVSLSHMV 1026

Query: 1348 QDKIHARSRGPRVVLTRQPTGRR 1370
             DK+HAR+RGPR  LTRQPT  R
Sbjct: 1027 VDKMHARARGPRATLTRQPTEGR 1049



 Score =  213 bits (541), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 112/206 (54%), Positives = 144/206 (69%), Gaps = 7/206 (3%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPK-IKAAQFDIVNH 191
           +D  DY  N  ++   Q  A ++ D   LF     ++   I DK++ K  + ++FD  N 
Sbjct: 359 VDDRDYVGNKRLELAGQLLALLFED---LFKTFNTNLKSAI-DKVLKKPSRTSEFDAFNT 414

Query: 192 MR--QDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
           M+   D IT     AI TGNW+++RFKMER GVT VLSRLS+IS LGMMTRI+SQFEKTR
Sbjct: 415 MQFMGDHITAGFVRAISTGNWSLKRFKMERAGVTHVLSRLSFISALGMMTRISSQFEKTR 474

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHI 309
           KVSGPR+LQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT+ DE+ ++++ Y +G+E I
Sbjct: 475 KVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDVDEEPIVRLAYMLGVEDI 534

Query: 310 AMFNGEELSSPGVYLVFVNGILAGIT 335
           +   G E+  P  Y+V VNG + G+T
Sbjct: 535 STATGTEIYGPHTYVVNVNGSIIGLT 560



 Score =  172 bits (435), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 89/160 (55%), Positives = 107/160 (66%), Gaps = 25/160 (15%)

Query: 674 CQP-------RPTFLNMHQFL---GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRP 723
           C+P       RP     H  L   G   FDDFL +G +EYLDVNE NDS+IA+ ES I P
Sbjct: 604 CRPMIIADRGRPRVTTEHILLLKEGKMTFDDFLKQGLVEYLDVNEENDSYIALYESDIVP 663

Query: 724 GVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCI 783
             TTHLEI PFT+LG  AG              L+PYPHHNQ+PRNTYQCAMGKQA+G I
Sbjct: 664 -TTTHLEIEPFTILGAVAG--------------LIPYPHHNQSPRNTYQCAMGKQAIGAI 708

Query: 784 GYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
           GYNQQ+RIDTL+Y  VY Q+PMV++KTI +  + +LPAG+
Sbjct: 709 GYNQQSRIDTLLYLSVYPQQPMVKTKTIELIGYDRLPAGQ 748



 Score =  106 bits (264), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 58/152 (38%), Positives = 92/152 (60%), Gaps = 9/152 (5%)

Query: 390 LVIGRMPIMLQSSKCVL--------RNKTEYTSSSRRASTSSVTMHSQRTSPLLSCKKLR 441
           +VI    +  QS K +L          K+ ++ +   A+ S V    Q    + S  K+ 
Sbjct: 243 IVIALKALGFQSDKEILLLTAGNNEAYKSAFSPNLEEAAKSGVFTKHQALEYIGSRVKVN 302

Query: 442 QKRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDD 501
           +K     ++   ++A + L++  +AH+PV+NM F+ KA+++A M RR+++A+ D  M+DD
Sbjct: 303 RKVIGP-RRPAWEEALEVLATIVLAHVPVVNMDFRGKAIFVATMTRRVLMAMDDEKMVDD 361

Query: 502 RDYYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
           RDY GNKRLELAG LL+L+FED+FK FN+ LK
Sbjct: 362 RDYVGNKRLELAGQLLALLFEDLFKTFNTNLK 393



 Score = 96.7 bits (239), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 50/108 (46%), Positives = 69/108 (63%), Gaps = 7/108 (6%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           + DKW L+ +FLK KGLVK HIDSF+YF++V+IK +++AN+ + SDVDP F+LKY DIHV
Sbjct: 28  VEDKWLLLPAFLKVKGLVKQHIDSFNYFVDVDIKSILRANSKVTSDVDPRFWLKYTDIHV 87

Query: 172 GIADKIIPKIKAAQFDIVNH---MRQDTITNALTAAIQ--TGNWTIRR 214
           G  D+  P   A    +  H   +R  T +  + A IQ   G   +RR
Sbjct: 88  GFPDRTDP--DAVDKSVTPHECRLRDTTYSAPILATIQYTRGKNVVRR 133



 Score = 80.1 bits (196), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 36/58 (62%), Positives = 44/58 (75%)

Query: 354 RQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKTE 411
           +  TPHECRLRD TYSAPI   I+YTRG   V R ++ IGR+PIML+S+KCVL  +TE
Sbjct: 100 KSVTPHECRLRDTTYSAPILATIQYTRGKNVVRRPNVNIGRLPIMLRSNKCVLSGRTE 157


>gi|428184687|gb|EKX53541.1| hypothetical protein GUITHDRAFT_64211 [Guillardia theta CCMP2712]
          Length = 1155

 Score =  320 bits (821), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 147/265 (55%), Positives = 196/265 (73%), Gaps = 5/265 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+P PHHNQ+PRNTYQCAMGKQA+G I YNQ  RIDTL+Y LVY QRP+ ++KTI   N
Sbjct: 693  GLIPNPHHNQSPRNTYQCAMGKQAIGAIAYNQLQRIDTLLYLLVYPQRPLAQTKTIEFIN 752

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            FH++PAGQNAT+AVMSY+GYDIEDA+++N++++DRGFGR +V + S   LK+Y N   DR
Sbjct: 753  FHRIPAGQNATVAVMSYTGYDIEDAVVLNRSAVDRGFGRTIVLKKSTTSLKRYSNAAEDR 812

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMP----TISVSAISMATP 1088
            I  P    + R  + R   LD+DGIV  G ++ + Q+LVNK +P    T+  +   +   
Sbjct: 813  ITYPQSGGNERLAL-RTANLDRDGIVGVGSKVSQGQILVNKMVPKDISTVINNPDELRED 871

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
             +K  P+ YK     Y+++VL++SN ++ FL+K+L+R TRRPE+GDKFSSRHGQKGV G+
Sbjct: 872  AFKSAPLVYKDKADGYVDQVLLTSNHDEHFLVKVLMRTTRRPELGDKFSSRHGQKGVTGI 931

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            I+ QEDMPF E G+CPD+IMNPHG 
Sbjct: 932  IIPQEDMPFTEEGLCPDLIMNPHGF 956



 Score =  262 bits (670), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 121/209 (57%), Positives = 157/209 (75%), Gaps = 6/209 (2%)

Query: 1166 IIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIG 1225
            +I NP  L    R   +K  P+ YK     Y+++VL++SN ++ FL+K+L+R TRRPE+G
Sbjct: 861  VINNPDEL----REDAFKSAPLVYKDKADGYVDQVLLTSNHDEHFLVKVLMRTTRRPELG 916

Query: 1226 DKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLM 1285
            DKFSSRHGQKGV G+I+ QEDMPF E G+CPD+IMNPHG+PSRMTVGKL+E+L GKA LM
Sbjct: 917  DKFSSRHGQKGVTGIIIPQEDMPFTEEGLCPDLIMNPHGFPSRMTVGKLLEMLGGKAALM 976

Query: 1286 EGNYKEGTAFGGT--KLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKL 1343
             G + + TAF  T   +  + + L+ HGY++ GK++  SGITGE + AYI+ GP+YYQKL
Sbjct: 977  NGKFADATAFASTASSVQAISDTLVLHGYHFGGKELLTSGITGEPVPAYIFFGPIYYQKL 1036

Query: 1344 KHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
            KHMVQDK+HAR +GPR VLTRQPT  R K
Sbjct: 1037 KHMVQDKMHARHKGPRTVLTRQPTEGRSK 1065



 Score =  215 bits (547), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 108/203 (53%), Positives = 146/203 (71%), Gaps = 5/203 (2%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPK-IKAAQFDIVNH 191
           +D  DY+ N  ++   Q  + ++ DV   F     D+   IA K + K  +   FD++ +
Sbjct: 373 MDDKDYYGNKRLELAGQTMSLLFEDV---FKSFNSDVQ-KIAQKQLEKPSRTTTFDVLKY 428

Query: 192 MRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKV 251
           +    IT+AL  AI TGNW +RRF MERQGVTQVLSRLSYI+ LGM+TR+ SQFEKTRKV
Sbjct: 429 LPPTKITSALVNAISTGNWNLRRFGMERQGVTQVLSRLSYIAALGMITRVQSQFEKTRKV 488

Query: 252 SGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAM 311
           SGPR+LQ SQWGMLCP+DTPEGE+CGLVKNL+LMTH+TT++DE  +  + Y++G+E + +
Sbjct: 489 SGPRALQPSQWGMLCPADTPEGESCGLVKNLSLMTHVTTDDDELPIELLCYDLGVEDLGI 548

Query: 312 FNGEELSSPGVYLVFVNGILAGI 334
            +GEE +   VYLVF+NG+L G+
Sbjct: 549 LSGEEATLGNVYLVFLNGLLLGL 571



 Score =  166 bits (421), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 81/134 (60%), Positives = 95/134 (70%), Gaps = 15/134 (11%)

Query: 690 KRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYN 749
           + F DFL EG IEYLDVNE NDS IA+ E GI P  TTHLEI P T++G CAG       
Sbjct: 642 RTFSDFLKEGLIEYLDVNEENDSLIALYEHGIGPK-TTHLEIDPLTVMGACAG------- 693

Query: 750 KRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESK 809
                  L+P PHHNQ+PRNTYQCAMGKQA+G I YNQ  RIDTL+Y LVY QRP+ ++K
Sbjct: 694 -------LIPNPHHNQSPRNTYQCAMGKQAIGAIAYNQLQRIDTLLYLLVYPQRPLAQTK 746

Query: 810 TIRITNFHKLPAGK 823
           TI   NFH++PAG+
Sbjct: 747 TIEFINFHRIPAGQ 760



 Score = 87.8 bits (216), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 43/97 (44%), Positives = 74/97 (76%), Gaps = 1/97 (1%)

Query: 439 KLRQKRF-QTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPD 497
           K++  +F +  + T  ++AR+ L++  ++H+PV+   F+ KA+Y+ +M+RR++ A+ D  
Sbjct: 312 KIKPTKFARRQQSTKAEEAREKLATVVVSHVPVVKYDFRAKAIYICLMLRRIIQAMHDET 371

Query: 498 MLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELKE 534
           ++DD+DYYGNKRLELAG  +SL+FEDVFK FNS++++
Sbjct: 372 VMDDKDYYGNKRLELAGQTMSLLFEDVFKSFNSDVQK 408



 Score = 76.6 bits (187), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 32/61 (52%), Positives = 47/61 (77%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           ++DKW+L+ +FLK +GL K  IDSF+YF+NV++K +++AN  I  D DP +YL+Y DI V
Sbjct: 37  VKDKWRLLPAFLKVRGLTKQQIDSFNYFLNVDMKLILKANNKITCDADPGWYLEYKDIRV 96

Query: 172 G 172
           G
Sbjct: 97  G 97



 Score = 67.0 bits (162), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 35/67 (52%), Positives = 43/67 (64%), Gaps = 7/67 (10%)

Query: 357 TPHECRLRDLTYSAPITVDIEYTRGS-------QRVVRSDLVIGRMPIMLQSSKCVLRNK 409
           TP +CRLRD+TY A I VDIEYTR         +RV + +  IGRMPIML+ S CVL  K
Sbjct: 116 TPQQCRLRDMTYYAQILVDIEYTRDQAGGGGKKERVRKDNHPIGRMPIMLRCSHCVLNGK 175

Query: 410 TEYTSSS 416
           +E   S+
Sbjct: 176 SETEMSA 182


>gi|71013466|ref|XP_758593.1| hypothetical protein UM02446.1 [Ustilago maydis 521]
 gi|46098251|gb|EAK83484.1| hypothetical protein UM02446.1 [Ustilago maydis 521]
          Length = 1169

 Score =  320 bits (821), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 155/271 (57%), Positives = 194/271 (71%), Gaps = 10/271 (3%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQ  G IGYNQ  RIDTL+Y ++Y Q+PMV+S+TI +  
Sbjct: 701  GLIPYPHHNQSPRNTYQCAMGKQGQGAIGYNQLIRIDTLLYLMLYPQQPMVKSRTIELIG 760

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAG N+ +AVMSYSGYDIEDAL++NKASLDRGFGR    + S  V+++YPN THDR
Sbjct: 761  YDKLPAGTNSMVAVMSYSGYDIEDALVLNKASLDRGFGRSQTMKKSSTVIRKYPNGTHDR 820

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPT----ISVSAI----- 1083
            +    ++  T K   R+  L+ DGI   GE++ +  V VNK  P      S +AI     
Sbjct: 821  LADAPVDDTTGKRQKRYDILEADGIAGVGERVEQGDVYVNKQTPVNANDNSSAAIMIGAS 880

Query: 1084 -SMATPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQ 1142
             + A+  YK  P+SYK  V  Y+++VL++    D  LIK L+RQTRRPE+GDKFSSRHGQ
Sbjct: 881  NAAASVAYKSAPLSYKPPVSGYIDQVLITDTDSDQTLIKALIRQTRRPELGDKFSSRHGQ 940

Query: 1143 KGVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            KGV GLIV+QEDMPF + GI PDIIMNPHG 
Sbjct: 941  KGVCGLIVQQEDMPFTDQGINPDIIMNPHGF 971



 Score =  275 bits (704), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 135/233 (57%), Positives = 167/233 (71%), Gaps = 8/233 (3%)

Query: 1146 IGLIVEQEDM------PFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEK 1199
            +G  VEQ D+      P N +      IM   G         YK  P+SYK  V  Y+++
Sbjct: 848  VGERVEQGDVYVNKQTPVNANDNSSAAIMI--GASNAAASVAYKSAPLSYKPPVSGYIDQ 905

Query: 1200 VLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDII 1259
            VL++    D  LIK L+RQTRRPE+GDKFSSRHGQKGV GLIV+QEDMPF + GI PDII
Sbjct: 906  VLITDTDSDQTLIKALIRQTRRPELGDKFSSRHGQKGVCGLIVQQEDMPFTDQGINPDII 965

Query: 1260 MNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDI 1319
            MNPHG+PSRMTVGK+IELL+GKAG++ G  + GTAFGG+K+ D+   L+ +GYNY GK+ 
Sbjct: 966  MNPHGFPSRMTVGKMIELLSGKAGVITGTLQYGTAFGGSKVEDMSALLVENGYNYAGKET 1025

Query: 1320 FYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
              SGITG+ LE Y+Y GP+YYQ+LKHMVQDK+HAR+RGPR VLTRQPT  R +
Sbjct: 1026 LTSGITGQPLECYVYFGPIYYQRLKHMVQDKMHARARGPRAVLTRQPTEGRSR 1078



 Score =  211 bits (537), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 108/206 (52%), Positives = 143/206 (69%), Gaps = 7/206 (3%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKI-KAAQFDIVN- 190
           +D  DY  N  ++   Q  + ++ D   LF     D+ + I DK++ K  +  +FD  N 
Sbjct: 376 VDDRDYVGNKRLELAGQLLSLLFED---LFKKFNSDLKMNI-DKVLKKPNRTVEFDAFNQ 431

Query: 191 -HMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
            H   D IT+    AI TGNW+++RFKMER G+T VLSRLS+I+ LGMMTRI+SQFEKTR
Sbjct: 432 FHFNGDYITSGFVRAISTGNWSLKRFKMERAGITHVLSRLSFIAALGMMTRISSQFEKTR 491

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHI 309
           KVSGPR+LQ SQWGMLCPSDTPEGEACGLVKNLAL THITT+ +E+ + +I + +G+E I
Sbjct: 492 KVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALTTHITTDVEEEPIARIAFTLGVEDI 551

Query: 310 AMFNGEELSSPGVYLVFVNGILAGIT 335
            +  G EL  P  Y+V++NG + G+T
Sbjct: 552 HLLTGAELYRPDSYVVYLNGNVLGVT 577



 Score =  174 bits (440), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 85/149 (57%), Positives = 104/149 (69%), Gaps = 15/149 (10%)

Query: 675 QPRPTFLNMHQFL-GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAP 733
            PR T  +M Q   G +RFDDFL+ G IEY+DVNE ND++IA+ E  I+P  TTHLEI P
Sbjct: 633 HPRVTESHMQQLKSGARRFDDFLHNGLIEYVDVNEENDANIAMYEHEIKPQYTTHLEIEP 692

Query: 734 FTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDT 793
           FT+LG  AG              L+PYPHHNQ+PRNTYQCAMGKQ  G IGYNQ  RIDT
Sbjct: 693 FTILGAVAG--------------LIPYPHHNQSPRNTYQCAMGKQGQGAIGYNQLIRIDT 738

Query: 794 LMYNLVYAQRPMVESKTIRITNFHKLPAG 822
           L+Y ++Y Q+PMV+S+TI +  + KLPAG
Sbjct: 739 LLYLMLYPQQPMVKSRTIELIGYDKLPAG 767



 Score =  104 bits (259), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 45/80 (56%), Positives = 65/80 (81%)

Query: 454 DDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELA 513
           ++A D L++  +AH+PV  + F+ KA+Y+A M+RR+++A+ D   +DDRDY GNKRLELA
Sbjct: 331 EEALDVLATVIMAHVPVERLNFRPKAIYIASMVRRVLMAMQDEKKVDDRDYVGNKRLELA 390

Query: 514 GSLLSLMFEDVFKRFNSELK 533
           G LLSL+FED+FK+FNS+LK
Sbjct: 391 GQLLSLLFEDLFKKFNSDLK 410



 Score = 84.0 bits (206), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 37/58 (63%), Positives = 48/58 (82%)

Query: 354 RQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKTE 411
           R  TPHECRLRD+TYSA I V+IEYTRG + + R ++ IGR+P+ML+S+KCVL NK+E
Sbjct: 118 RPITPHECRLRDITYSAHIFVNIEYTRGGKIIRRKNVAIGRIPVMLRSNKCVLANKSE 175



 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/61 (57%), Positives = 49/61 (80%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           + DKW+LV +FL+ KGLVK HIDS++YF++ ++K +++AN  I SD+DP FYLKY DI V
Sbjct: 46  VEDKWELVPAFLQVKGLVKQHIDSYNYFVDHDLKNIIKANEKITSDIDPKFYLKYTDITV 105

Query: 172 G 172
           G
Sbjct: 106 G 106


>gi|242808107|ref|XP_002485094.1| DNA-directed RNA polymerase III, beta subunit, putative [Talaromyces
            stipitatus ATCC 10500]
 gi|218715719|gb|EED15141.1| DNA-directed RNA polymerase III, beta subunit, putative [Talaromyces
            stipitatus ATCC 10500]
          Length = 1212

 Score =  320 bits (821), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 149/266 (56%), Positives = 193/266 (72%), Gaps = 6/266 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I  NQ  RID+L+Y +VY Q+PMV+++TI +  
Sbjct: 744  GLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSLLYLMVYPQKPMVKTRTIELIK 803

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            +  LPAGQNAT+AVMSYSGYDIEDAL++NK S+DRGFGRC V+R     LK YPN + DR
Sbjct: 804  YDHLPAGQNATVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYVANLKSYPNGSEDR 863

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT----- 1087
            + GP +  +   P+ +H  LD DG+ A GE + + QV +NK +P  + SA    +     
Sbjct: 864  LRGPEI-GENNVPIAKHALLDSDGLAAVGEVVSQGQVYINKEVPAAAFSAGITGSDAGRP 922

Query: 1088 PEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
             +Y   P++YK   PSY++KV+VS    ++ + K+  RQTRRPE+GDKFSSRHGQKGV+G
Sbjct: 923  TDYNPAPMTYKLPDPSYIDKVMVSVTEGESKIYKVQTRQTRRPEVGDKFSSRHGQKGVVG 982

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            +I EQ DMPF + GI PDIIMNPHG 
Sbjct: 983  IIAEQADMPFTDQGIVPDIIMNPHGF 1008



 Score =  257 bits (657), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 119/203 (58%), Positives = 155/203 (76%), Gaps = 2/203 (0%)

Query: 1172 GLKGCD--RITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFS 1229
            G+ G D  R T+Y   P++YK   PSY++KV+VS    ++ + K+  RQTRRPE+GDKFS
Sbjct: 913  GITGSDAGRPTDYNPAPMTYKLPDPSYIDKVMVSVTEGESKIYKVQTRQTRRPEVGDKFS 972

Query: 1230 SRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNY 1289
            SRHGQKGV+G+I EQ DMPF + GI PDIIMNPHG+PSRMTVGKL+EL+AGKAG++ G +
Sbjct: 973  SRHGQKGVVGIIAEQADMPFTDQGIVPDIIMNPHGFPSRMTVGKLLELVAGKAGVLSGQH 1032

Query: 1290 KEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQD 1349
              GTAFGG+ + ++   L+  G++Y GKD   SGITG+ L  Y+++GP+YYQKLKHMVQD
Sbjct: 1033 GYGTAFGGSPVEEMSAILVDKGFSYGGKDYLTSGITGDPLPFYVFTGPIYYQKLKHMVQD 1092

Query: 1350 KIHARSRGPRVVLTRQPTGRRWK 1372
            K+H+RS GPR  LTRQPT  R +
Sbjct: 1093 KMHSRSTGPRATLTRQPTEGRSR 1115



 Score =  197 bits (502), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 104/205 (50%), Positives = 141/205 (68%), Gaps = 6/205 (2%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVN-- 190
           +D  DY  N  ++   Q  A ++ D   LF     DI + I  K++ K +   FD ++  
Sbjct: 423 VDDRDYVGNKRLELAGQLLALLFED---LFKKFCFDIKMNIT-KVLGKRRREIFDAMSVV 478

Query: 191 HMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRK 250
            +  + IT+ +  AI TGNW+++RF+MER GVT VLSRLSYI+ LGMMTRI+SQFEKTRK
Sbjct: 479 ALHGNHITHGMNRAISTGNWSLKRFRMERAGVTHVLSRLSYIAALGMMTRISSQFEKTRK 538

Query: 251 VSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIA 310
           VSGPR+LQ SQ+GMLCPSDTPEGEACGLVKNLALMTHITT ++E  + K+++ +G E I 
Sbjct: 539 VSGPRALQPSQFGMLCPSDTPEGEACGLVKNLALMTHITTNDEEGPVSKLVFMLGAEDIT 598

Query: 311 MFNGEELSSPGVYLVFVNGILAGIT 335
             +G+E+   G Y++ +NG    +T
Sbjct: 599 TLSGKEIYGLGAYIISMNGTPIAMT 623



 Score =  156 bits (394), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 75/136 (55%), Positives = 96/136 (70%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G  +FDDFL +G +EYLDVNE NDS+IA+ E  +   +TTHLEI PFT+LG  AG     
Sbjct: 691 GSMQFDDFLAQGLVEYLDVNEENDSNIAIYEKDV-VDITTHLEIEPFTILGAVAG----- 744

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQA+G I  NQ  RID+L+Y +VY Q+PMV+
Sbjct: 745 ---------LIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSLLYLMVYPQKPMVK 795

Query: 808 SKTIRITNFHKLPAGK 823
           ++TI +  +  LPAG+
Sbjct: 796 TRTIELIKYDHLPAGQ 811



 Score =  107 bits (266), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 49/95 (51%), Positives = 72/95 (75%)

Query: 439 KLRQKRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDM 498
           K+ + +   YKKT +++A + +SS  I+H+ V NM F+ KA+Y+A M RR+++A  DP M
Sbjct: 363 KINRGKVGGYKKTHIEEAIEAISSVVISHVEVTNMDFRPKAIYVANMARRVLMAKHDPSM 422

Query: 499 LDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
           +DDRDY GNKRLELAG LL+L+FED+FK+F  ++K
Sbjct: 423 VDDRDYVGNKRLELAGQLLALLFEDLFKKFCFDIK 457



 Score = 84.3 bits (207), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 50/60 (83%)

Query: 113 RDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           RDKW L+ +FLK KGLVK HIDS++YFI V++KK+++A++ IYSD D  F+LK+ DI+VG
Sbjct: 89  RDKWNLLPAFLKVKGLVKQHIDSYNYFIEVQLKKIVEASSTIYSDADSHFFLKFTDIYVG 148



 Score = 78.6 bits (192), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/65 (56%), Positives = 45/65 (69%)

Query: 345 EIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKC 404
           E ++S       TP+ECRLRD+TY+API VD  Y RG   V +  + IGRMPIML+SSKC
Sbjct: 155 EPKDSVESDSTVTPNECRLRDMTYAAPIFVDFTYKRGKDNVTQRRVPIGRMPIMLRSSKC 214

Query: 405 VLRNK 409
           VL NK
Sbjct: 215 VLSNK 219


>gi|350638131|gb|EHA26487.1| hypothetical protein ASPNIDRAFT_171679 [Aspergillus niger ATCC 1015]
          Length = 1201

 Score =  320 bits (821), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 152/266 (57%), Positives = 195/266 (73%), Gaps = 7/266 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I  NQ  RID+++Y +VY Q+PMV+S+TI +T 
Sbjct: 734  GLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVYPQKPMVKSRTIELTK 793

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + +LPAGQNA +AVMSYSGYDIEDAL++NK S+DRGFGRC V+R     LK Y N T DR
Sbjct: 794  YDQLPAGQNAIVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYVTNLKSYSNGTKDR 853

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSA----ISMATP 1088
            + GP  E D   P+ +H  L+ DG+ A GEQ+   +V +NKS P  S+S+         P
Sbjct: 854  LSGPTYENDA--PIRKHALLESDGLAAVGEQVNAGEVYINKSTPDQSMSSGFPNSDAGRP 911

Query: 1089 -EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
              Y   P++YK   P+Y++KV+VS    +  L+K+L RQTRRPE+GDKFSSRHGQKGV+G
Sbjct: 912  VSYMPTPMTYKLPDPAYIDKVMVSVTENENQLVKVLTRQTRRPEVGDKFSSRHGQKGVVG 971

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            +I +Q DMPF ++GI PDIIMNPHG 
Sbjct: 972  IIADQADMPFTDTGINPDIIMNPHGF 997



 Score =  259 bits (663), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 125/231 (54%), Positives = 169/231 (73%), Gaps = 5/231 (2%)

Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHGLKGCD--RITEYKEVPVSYKGSVPSYLEKVL 1201
              +G  V   ++  N+S   PD  M+  G    D  R   Y   P++YK   P+Y++KV+
Sbjct: 877  AAVGEQVNAGEVYINKS--TPDQSMS-SGFPNSDAGRPVSYMPTPMTYKLPDPAYIDKVM 933

Query: 1202 VSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMN 1261
            VS    +  L+K+L RQTRRPE+GDKFSSRHGQKGV+G+I +Q DMPF ++GI PDIIMN
Sbjct: 934  VSVTENENQLVKVLTRQTRRPEVGDKFSSRHGQKGVVGIIADQADMPFTDTGINPDIIMN 993

Query: 1262 PHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFY 1321
            PHG+PSRMTVGK++EL+AGKAG++ G +  GT FGG+ + ++ + LI +G++Y GKD   
Sbjct: 994  PHGFPSRMTVGKMLELVAGKAGVLAGQHGYGTCFGGSPVQEMSQILIDNGFSYGGKDYLT 1053

Query: 1322 SGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
            SGITGEAL  Y+++GP+YYQKLKHMVQDK+H+R+RGPR +LTRQPT  R +
Sbjct: 1054 SGITGEALPFYVFTGPIYYQKLKHMVQDKMHSRARGPRAILTRQPTEGRSR 1104



 Score =  202 bits (513), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 105/205 (51%), Positives = 136/205 (66%), Gaps = 5/205 (2%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDI--VN 190
           +D  DY  N  ++   Q  A ++ D   LF     DI + I   +  + +A  FD   V 
Sbjct: 412 VDDRDYLGNKRLELAGQLLALLFED---LFKKFCFDIKMNIDKVLNKRNRAEAFDAYSVI 468

Query: 191 HMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRK 250
            M  + IT  +  AI TGNW+++RF+MER GVT VLSRLSYI+ LGMMTRI+SQFEKTRK
Sbjct: 469 TMHSNHITQGMNRAISTGNWSLKRFRMERAGVTHVLSRLSYIAALGMMTRISSQFEKTRK 528

Query: 251 VSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIA 310
           VSGPR+LQ SQ+GMLCP+DTPEGEACGLVKNLALMTHITT ++E  +  +++ +G E I 
Sbjct: 529 VSGPRALQPSQFGMLCPADTPEGEACGLVKNLALMTHITTNDEEGPVRNLIFMLGAEDIQ 588

Query: 311 MFNGEELSSPGVYLVFVNGILAGIT 335
              G+EL  PG Y + +NG    +T
Sbjct: 589 TVGGKELYGPGCYTISINGTPTALT 613



 Score =  157 bits (396), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 77/139 (55%), Positives = 97/139 (69%), Gaps = 15/139 (10%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G  +FDDFL +G +EYLDVNE NDS I++ E  I    TTHLEI PFT+LG  AG     
Sbjct: 681 GTMQFDDFLAQGLVEYLDVNEENDSLISIYEKDITE-TTTHLEIEPFTVLGAVAG----- 734

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQA+G I  NQ  RID+++Y +VY Q+PMV+
Sbjct: 735 ---------LIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVYPQKPMVK 785

Query: 808 SKTIRITNFHKLPAGKCQI 826
           S+TI +T + +LPAG+  I
Sbjct: 786 SRTIELTKYDQLPAGQNAI 804



 Score =  103 bits (258), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 50/104 (48%), Positives = 78/104 (75%), Gaps = 1/104 (0%)

Query: 439 KLRQKRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDM 498
           K+ +K+  +Y++T V +A + ++S  I+HI V NM F+ KA+Y+A M RR+++A +D  +
Sbjct: 352 KINRKQSPSYRRTHVQEAVEAIASVIISHIEVKNMNFRPKAVYVAHMARRVLMAKNDASL 411

Query: 499 LDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELKETNLSGVVN 542
           +DDRDY GNKRLELAG LL+L+FED+FK+F  ++K  N+  V+N
Sbjct: 412 VDDRDYLGNKRLELAGQLLALLFEDLFKKFCFDIK-MNIDKVLN 454



 Score = 87.4 bits (215), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 40/61 (65%), Positives = 47/61 (77%), Gaps = 1/61 (1%)

Query: 350 FNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNK 409
           F Y+   +P ECRLRD TY+API VD EY RG QRV+R  + IGRMP+ML+SSKCVL NK
Sbjct: 150 FTYS-TVSPQECRLRDTTYAAPIQVDFEYVRGRQRVMRKGVAIGRMPVMLRSSKCVLANK 208

Query: 410 T 410
           T
Sbjct: 209 T 209



 Score = 74.7 bits (182), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/61 (49%), Positives = 49/61 (80%)

Query: 113 RDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           +DKW L+ +FLK KGLVK HIDS++Y + V++KK++++++ I SDVD  FY+K+ +I++G
Sbjct: 76  KDKWNLLPAFLKVKGLVKQHIDSYNYLVEVQLKKIVESSSTIRSDVDHTFYIKFTNIYLG 135

Query: 173 I 173
            
Sbjct: 136 F 136


>gi|170579233|ref|XP_001894738.1| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide,
            putative [Brugia malayi]
 gi|158598542|gb|EDP36414.1| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide,
            putative [Brugia malayi]
          Length = 1104

 Score =  320 bits (820), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 153/272 (56%), Positives = 191/272 (70%), Gaps = 43/272 (15%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQQ RID+LMY LVY QRP+V++KTI   N
Sbjct: 664  GLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQQKRIDSLMYLLVYPQRPLVKTKTIEFCN 723

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNA IAVMSYSGYDIEDAL++NKASLDRG+GRCLVY+++K   ++YPNQT DR
Sbjct: 724  FEKLPAGQNAIIAVMSYSGYDIEDALVLNKASLDRGYGRCLVYKHAKATARKYPNQTFDR 783

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATP---- 1088
            ++GP +EA TRKP+Y+H+ LDQ+GIV  G  I  +QV++NK MP +S+ A +  +     
Sbjct: 784  LMGPTIEAATRKPIYKHQVLDQEGIVYVGACIRSKQVMINKHMPVVSMEAGATVSNNDGT 843

Query: 1089 --------EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRH 1140
                    EYK+V V Y+  VPSY E+VL++ N +DA L+K                   
Sbjct: 844  NIGGSHEVEYKDVSVVYRNPVPSYAERVLLTYNEDDAHLVK------------------- 884

Query: 1141 GQKGVIGLIVEQEDMPFNESGICPDIIMNPHG 1172
                        EDMPFN+ G+CPD+IMNPHG
Sbjct: 885  ------------EDMPFNDLGMCPDMIMNPHG 904



 Score =  238 bits (608), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 110/163 (67%), Positives = 135/163 (82%)

Query: 173 IADKIIPKIKAAQFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYI 232
           IAD  + K  AA  DIV H+RQD ITNAL  A+ TGNWTI+RFKMERQGVTQVLSRLSYI
Sbjct: 381 IADNSLGKTLAAPLDIVKHVRQDLITNALVDALATGNWTIKRFKMERQGVTQVLSRLSYI 440

Query: 233 SGLGMMTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTEN 292
           S LGMMTRINS FEKTRKVSGPRSLQ SQWGMLCPSDTPEGE+CGLVKNLAL++HITT++
Sbjct: 441 SVLGMMTRINSTFEKTRKVSGPRSLQPSQWGMLCPSDTPEGESCGLVKNLALLSHITTDS 500

Query: 293 DEKNMLKIMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAGIT 335
           DEK +++++YN G+E +   +   + +P  ++VF+NG++ G+T
Sbjct: 501 DEKPVIRLLYNAGVEDVKSLHFSAIHNPAYHIVFLNGVIVGLT 543



 Score =  210 bits (535), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 104/193 (53%), Positives = 128/193 (66%), Gaps = 31/193 (16%)

Query: 1180 TEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1239
             EYK+V V Y+  VPSY E+VL++ N +DA L+K                          
Sbjct: 851  VEYKDVSVVYRNPVPSYAERVLLTYNEDDAHLVK-------------------------- 884

Query: 1240 LIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTK 1299
                 EDMPFN+ G+CPD+IMNPHGYPSRMTVGKL+ELL+GK  ++ G +  GTAFGG +
Sbjct: 885  -----EDMPFNDLGMCPDMIMNPHGYPSRMTVGKLMELLSGKNAVLSGKFHYGTAFGGDQ 939

Query: 1300 LVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPR 1359
            +  V EEL   G+NY GKD+  SGITG+ L AYIY GP+YYQKLKHMV DK+HAR+RGPR
Sbjct: 940  VDIVCEELAARGFNYLGKDMLTSGITGQQLSAYIYFGPIYYQKLKHMVLDKMHARARGPR 999

Query: 1360 VVLTRQPTGRRWK 1372
             VLTRQPT  R +
Sbjct: 1000 AVLTRQPTEGRAR 1012



 Score =  185 bits (469), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 90/139 (64%), Positives = 105/139 (75%), Gaps = 15/139 (10%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G++ F+DF+ +G IEYLDVNE ND+ IAV E+ I+P  TTHLEI PFTLLGVCAG     
Sbjct: 611 GYRIFEDFVDDGLIEYLDVNEMNDASIAVYENQIKP-TTTHLEIEPFTLLGVCAG----- 664

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQQ RID+LMY LVY QRP+V+
Sbjct: 665 ---------LIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQQKRIDSLMYLLVYPQRPLVK 715

Query: 808 SKTIRITNFHKLPAGKCQI 826
           +KTI   NF KLPAG+  I
Sbjct: 716 TKTIEFCNFEKLPAGQNAI 734



 Score =  104 bits (259), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 50/79 (63%), Positives = 62/79 (78%)

Query: 455 DARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAG 514
           +A DFLS+  IAH+P  +   KMKA+YL +M+RR++ A       DDRD+YGNKRLELAG
Sbjct: 301 EAIDFLSNLMIAHVPCPDGNMKMKAVYLGLMVRRLMQAEVGDTECDDRDFYGNKRLELAG 360

Query: 515 SLLSLMFEDVFKRFNSELK 533
           SLL+L+FEDVFKRFNSELK
Sbjct: 361 SLLALLFEDVFKRFNSELK 379



 Score =  103 bits (258), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 48/72 (66%), Positives = 59/72 (81%), Gaps = 1/72 (1%)

Query: 341 VCKPEIEESFN-YTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIML 399
           V  P  EE FN    + +PHECRLRD+TYSAPI+VDIEYTRGSQRV+R+ L+IG+MP+ML
Sbjct: 71  VGMPSSEEGFNQINDKISPHECRLRDMTYSAPISVDIEYTRGSQRVLRNGLIIGKMPVML 130

Query: 400 QSSKCVLRNKTE 411
           +SSKCVL+N  E
Sbjct: 131 RSSKCVLKNMNE 142



 Score = 90.1 bits (222), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 44/78 (56%), Positives = 55/78 (70%), Gaps = 10/78 (12%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           I+DKW LV +FL+ +GLVK HI S+DYF++ EIKK+++AN  I SD +P FYLKYLDIHV
Sbjct: 12  IKDKWTLVPAFLQVRGLVKQHIASYDYFVSTEIKKILRANDKITSDANPSFYLKYLDIHV 71

Query: 172 G----------IADKIIP 179
           G          I DKI P
Sbjct: 72  GMPSSEEGFNQINDKISP 89


>gi|384497113|gb|EIE87604.1| DNA-directed RNA polymerase III subunit RPC2 [Rhizopus delemar RA
            99-880]
          Length = 1146

 Score =  320 bits (820), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 155/266 (58%), Positives = 195/266 (73%), Gaps = 7/266 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G IGYNQ NRI+TL+Y +VY Q+PMV+SKTI +  
Sbjct: 685  GLIPYPHHNQSPRNTYQCAMGKQAIGAIGYNQLNRIETLIYLMVYPQQPMVKSKTIELIG 744

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+AVMSYSGYDIEDAL++NK+ LDRGFGRC V R    ++K+YPN THDR
Sbjct: 745  YDKLPAGQNATVAVMSYSGYDIEDALVLNKSGLDRGFGRCQVMRKYATMVKRYPNGTHDR 804

Query: 1033 ILG-PLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMP-TISVSA---ISMAT 1087
            +   P  E++     Y   A++ DGI   GE +    + +NK  P +  V A    +  T
Sbjct: 805  LADPPSRESELWNESY--DAIEADGIAGVGEPVEAGSIYINKQTPVSTGVDAGVPGAAQT 862

Query: 1088 PEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
              YK  P+ YK     Y++KVL ++   D  LIK+ +RQTRRPE+GDKFSSRHGQKGV G
Sbjct: 863  VAYKPAPMRYKSPQTGYIDKVLFTTTESDQTLIKVNIRQTRRPELGDKFSSRHGQKGVCG 922

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            +IV+QEDMPF++ G+CPDIIMNPHG 
Sbjct: 923  IIVQQEDMPFSDLGVCPDIIMNPHGF 948



 Score =  278 bits (710), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 127/201 (63%), Positives = 158/201 (78%)

Query: 1172 GLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSR 1231
            G+ G  +   YK  P+ YK     Y++KVL ++   D  LIK+ +RQTRRPE+GDKFSSR
Sbjct: 855  GVPGAAQTVAYKPAPMRYKSPQTGYIDKVLFTTTESDQTLIKVNIRQTRRPELGDKFSSR 914

Query: 1232 HGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKE 1291
            HGQKGV G+IV+QEDMPF++ G+CPDIIMNPHG+PSRMTVGK+IELLAGKAG+++G+ + 
Sbjct: 915  HGQKGVCGIIVQQEDMPFSDLGVCPDIIMNPHGFPSRMTVGKMIELLAGKAGVLDGSLQY 974

Query: 1292 GTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKI 1351
            GTAFGG+K+ D+   LI HG+NY GKD   SGITGE L AYI+ GP+YYQKLKHMV DK+
Sbjct: 975  GTAFGGSKVEDMSRILINHGFNYSGKDYVTSGITGEPLSAYIFFGPIYYQKLKHMVMDKM 1034

Query: 1352 HARSRGPRVVLTRQPTGRRWK 1372
            HAR+RGPR  LTRQPT  R +
Sbjct: 1035 HARARGPRATLTRQPTEGRSR 1055



 Score =  216 bits (551), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 111/207 (53%), Positives = 143/207 (69%), Gaps = 7/207 (3%)

Query: 132 HIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQ-FDIVN 190
            +D  DY  N  ++   Q  + ++ D   LF     D+ +  ADK++ K    Q FDI N
Sbjct: 362 QVDDRDYVGNKRLELAGQLLSLLFED---LFKKFNSDLKMN-ADKVLKKPNRTQEFDIFN 417

Query: 191 HM--RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKT 248
            +    D IT+    AI TGNW ++RFKM+R G+TQVLSRLSYIS LGMMTRI+SQFEKT
Sbjct: 418 QLVLHGDHITSGFIRAISTGNWVLKRFKMDRAGITQVLSRLSYISALGMMTRISSQFEKT 477

Query: 249 RKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEH 308
           RKVSGPR+LQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT+ +E  + KI + +G+E 
Sbjct: 478 RKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDQEEDPIRKIAFALGVED 537

Query: 309 IAMFNGEELSSPGVYLVFVNGILAGIT 335
           + +  G E+  P  ++V +NG++ GIT
Sbjct: 538 VNLLTGAEIYRPNTFIVLLNGVILGIT 564



 Score =  165 bits (417), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 80/132 (60%), Positives = 97/132 (73%), Gaps = 15/132 (11%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKR 751
           FDDFL  G +EY+DVNE +D++IAV E  I P  TTHLEI PFT+LG  AG         
Sbjct: 636 FDDFLKRGLVEYVDVNEESDANIAVYEKDIIPQ-TTHLEIEPFTILGAVAG--------- 685

Query: 752 FHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTI 811
                L+PYPHHNQ+PRNTYQCAMGKQA+G IGYNQ NRI+TL+Y +VY Q+PMV+SKTI
Sbjct: 686 -----LIPYPHHNQSPRNTYQCAMGKQAIGAIGYNQLNRIETLIYLMVYPQQPMVKSKTI 740

Query: 812 RITNFHKLPAGK 823
            +  + KLPAG+
Sbjct: 741 ELIGYDKLPAGQ 752



 Score =  112 bits (279), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 52/95 (54%), Positives = 74/95 (77%)

Query: 439 KLRQKRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDM 498
           K+ +K   T +KT  ++A + L++  +AH+PV N+ F+ K++Y AVMIRR++ A+SD   
Sbjct: 303 KVNRKMGPTVRKTMAEEALEVLATVILAHVPVENLNFREKSIYAAVMIRRVLAAMSDEVQ 362

Query: 499 LDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
           +DDRDY GNKRLELAG LLSL+FED+FK+FNS+LK
Sbjct: 363 VDDRDYVGNKRLELAGQLLSLLFEDLFKKFNSDLK 397



 Score = 91.7 bits (226), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 40/66 (60%), Positives = 54/66 (81%)

Query: 111 EIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIH 170
           EI DKWKL+ +FLK KGLVK HIDSF+YF+NV+++K+++AN  + SDVDP FYLKY  I 
Sbjct: 32  EIEDKWKLLPAFLKVKGLVKQHIDSFNYFVNVDLQKIIKANEKVTSDVDPHFYLKYTGIR 91

Query: 171 VGIADK 176
           VG+ ++
Sbjct: 92  VGMPER 97



 Score = 87.4 bits (215), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 53/112 (47%), Positives = 68/112 (60%), Gaps = 14/112 (12%)

Query: 303 NIGIEHIAMFNGEELSS---PGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPH 359
           N+ ++ I   N E+++S   P  YL +  GI  G+         PE  +     R  TPH
Sbjct: 62  NVDLQKIIKAN-EKVTSDVDPHFYLKY-TGIRVGM---------PERTDDDVANRSYTPH 110

Query: 360 ECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKTE 411
           ECRLRDLTYSA I VD+EYTRG Q V R +++IGR+PIML+SS CVL  K E
Sbjct: 111 ECRLRDLTYSANIFVDVEYTRGRQIVKRKNVMIGRLPIMLRSSHCVLSGKNE 162


>gi|336272055|ref|XP_003350785.1| hypothetical protein SMAC_02456 [Sordaria macrospora k-hell]
          Length = 1117

 Score =  320 bits (820), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 148/264 (56%), Positives = 196/264 (74%), Gaps = 4/264 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+P+PHHNQ+PRNTYQCAMGKQA+G I YNQ NRIDTL+Y LVY QRPMV +KTI++ +
Sbjct: 684  GLIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLYTLVYPQRPMVITKTIQLIH 743

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+ VMSYSGYDIEDAL++NKASLDRGFGRC V+R     L+ Y N   DR
Sbjct: 744  YDKLPAGQNATVVVMSYSGYDIEDALVLNKASLDRGFGRCQVFRKYTAELQGYTNGRRDR 803

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPE 1089
            + G +++ +  KP+ +H  LD DG+   G ++   Q ++ K  P   +S   A    + +
Sbjct: 804  V-GGIMKDEDDKPIAKHAILDADGLAQVGSKVESGQTMIKKETPLDQISTGIAGDRGSDD 862

Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
            Y++   +Y+ S P+ ++KV++S N  +  LIK+  RQTRRPE+GDKFSSRHGQKGV+G+I
Sbjct: 863  YRDASTNYRISDPAIIDKVMISVNERENKLIKVQTRQTRRPELGDKFSSRHGQKGVVGII 922

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
            V +EDMPF++ G+ PDIIMNPHG 
Sbjct: 923  VNEEDMPFSDKGLRPDIIMNPHGF 946



 Score =  248 bits (632), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 115/203 (56%), Positives = 155/203 (76%), Gaps = 2/203 (0%)

Query: 1172 GLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSR 1231
            G+ G     +Y++   +Y+ S P+ ++KV++S N  +  LIK+  RQTRRPE+GDKFSSR
Sbjct: 853  GIAGDRGSDDYRDASTNYRISDPAIIDKVMISVNERENKLIKVQTRQTRRPELGDKFSSR 912

Query: 1232 HGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEG--NY 1289
            HGQKGV+G+IV +EDMPF++ G+ PDIIMNPHG+PSRMTVGKL E L GKA ++ G  +Y
Sbjct: 913  HGQKGVVGIIVNEEDMPFSDKGLRPDIIMNPHGFPSRMTVGKLFECLTGKASVIAGEKDY 972

Query: 1290 KEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQD 1349
              G AF    +  + + LI HG++++GKD F SGITGE +EAYIY+GP++YQ+LKHMVQD
Sbjct: 973  GFGDAFRSHPVESMGQALIDHGFSWEGKDYFTSGITGEPMEAYIYNGPIFYQRLKHMVQD 1032

Query: 1350 KIHARSRGPRVVLTRQPTGRRWK 1372
            K+H+RSRGPR +LTRQPT  R +
Sbjct: 1033 KMHSRSRGPRAILTRQPTEGRSR 1055



 Score =  179 bits (453), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 86/141 (60%), Positives = 108/141 (76%), Gaps = 2/141 (1%)

Query: 197 ITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVSGPRS 256
           I++ L  AIQ+GNWT++RF M R G+T VLSRLSYI+ LGMMTRI+SQFEKTRKVSGPR+
Sbjct: 423 ISHGLNRAIQSGNWTVKRFNMNRAGITHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRA 482

Query: 257 LQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMY--NIGIEHIAMFNG 314
           LQ SQWGMLC SDTPEGEACGLVKNLALMTHITT   E+ + K+++  +  +  I  + G
Sbjct: 483 LQPSQWGMLCTSDTPEGEACGLVKNLALMTHITTNVPEEPVKKMIFAADESVGPIREYTG 542

Query: 315 EELSSPGVYLVFVNGILAGIT 335
            E+ S G Y++ +NG    +T
Sbjct: 543 TEMHSKGSYIIHLNGTPFAVT 563



 Score =  160 bits (406), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 79/137 (57%), Positives = 96/137 (70%), Gaps = 15/137 (10%)

Query: 687 LGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELL 746
           LG   FD FL  G +EYLDVNE ND+ +A+ E  I    TTH+EI PFT+LG  AG    
Sbjct: 630 LGQATFDTFLTSGVVEYLDVNEENDTLVALQEDQI-TNSTTHMEIEPFTILGAVAG---- 684

Query: 747 QYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMV 806
                     L+P+PHHNQ+PRNTYQCAMGKQA+G I YNQ NRIDTL+Y LVY QRPMV
Sbjct: 685 ----------LIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLYTLVYPQRPMV 734

Query: 807 ESKTIRITNFHKLPAGK 823
            +KTI++ ++ KLPAG+
Sbjct: 735 ITKTIQLIHYDKLPAGQ 751



 Score = 93.2 bits (230), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 40/85 (47%), Positives = 65/85 (76%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           ++   ++  D L++  IAH+ V  + F  KA+Y+A+M+RR+++A  +P ++DDRD+ GNK
Sbjct: 310 RRNHAEEGLDALANLVIAHVTVEGLDFYPKAVYIAMMVRRVLMAAQNPKLVDDRDFVGNK 369

Query: 509 RLELAGSLLSLMFEDVFKRFNSELK 533
           RLELAG L+SL+FED+FK+F S++K
Sbjct: 370 RLELAGQLISLLFEDLFKKFISDVK 394



 Score = 74.3 bits (181), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 34/60 (56%), Positives = 47/60 (78%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGI 173
           DK+ LV +FLK KGLVK HIDS++YF+N EIK +++AN  + SD DP F+L++ DI VG+
Sbjct: 30  DKFHLVPAFLKVKGLVKQHIDSYNYFVNEEIKDIVKANRVVRSDQDPNFWLEFRDIRVGM 89



 Score = 63.9 bits (154), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 27/50 (54%), Positives = 37/50 (74%)

Query: 361 CRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
           CRLRDLTY+AP+ VDI YTR    +VR ++ + R+P+ML+S+KC L   T
Sbjct: 105 CRLRDLTYAAPVEVDIAYTRDKSVIVRKNIPLCRIPVMLKSAKCYLNGAT 154


>gi|389743088|gb|EIM84273.1| beta and beta-prime subunits of DNA dependent RNA-polymerase [Stereum
            hirsutum FP-91666 SS1]
          Length = 1141

 Score =  320 bits (819), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 155/265 (58%), Positives = 192/265 (72%), Gaps = 6/265 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G IGYNQ NRIDTL+Y  VY Q+PMV++KTI +  
Sbjct: 683  GLIPYPHHNQSPRNTYQCAMGKQAIGAIGYNQLNRIDTLLYLSVYPQQPMVKTKTIELVG 742

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+AVMSYSGYDIEDALI+NKAS+DRG+GRC V R +  ++++YPN T DR
Sbjct: 743  YDKLPAGQNATVAVMSYSGYDIEDALILNKASVDRGYGRCQVLRKNATLIRKYPNGTFDR 802

Query: 1033 IL-GPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAI---SMATP 1088
            +   P  E    +  Y    L  DG+   GE++    V VNK  PT +         A+ 
Sbjct: 803  LADAPTDEEGNVQKKYDIVQL--DGLAGVGERVDPGDVYVNKQTPTNANDNTFTGQAASV 860

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
             YK  P++YK  V  +++K+++S    D  LIK+L+RQTRRPE+GDKFSSRHGQKGV GL
Sbjct: 861  PYKNAPMTYKSPVAGHVDKIMISDTENDQTLIKVLIRQTRRPELGDKFSSRHGQKGVCGL 920

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            IV QEDMPFN+ GI PD IMNPHG 
Sbjct: 921  IVNQEDMPFNDQGIVPDTIMNPHGF 945



 Score =  268 bits (684), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 122/189 (64%), Positives = 152/189 (80%), Gaps = 1/189 (0%)

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
            YK  P++YK  V  +++K+++S    D  LIK+L+RQTRRPE+GDKFSSRHGQKGV GLI
Sbjct: 862  YKNAPMTYKSPVAGHVDKIMISDTENDQTLIKVLIRQTRRPELGDKFSSRHGQKGVCGLI 921

Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
            V QEDMPFN+ GI PD IMNPHG+PSRMTVGK+IELLAGKAG++ G  + GTAFGG+K+ 
Sbjct: 922  VNQEDMPFNDQGIVPDTIMNPHGFPSRMTVGKMIELLAGKAGVLAGKLQYGTAFGGSKVE 981

Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
            D+   LI +G++Y GKD+  SGITGE +EAY+Y GP+YYQ +KHMV DK+HAR+RGPR  
Sbjct: 982  DMSRILIENGFSYAGKDMLTSGITGEPMEAYVYFGPIYYQ-VKHMVMDKMHARARGPRAT 1040

Query: 1362 LTRQPTGRR 1370
            LTRQPT  R
Sbjct: 1041 LTRQPTEGR 1049



 Score =  212 bits (540), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 110/206 (53%), Positives = 144/206 (69%), Gaps = 7/206 (3%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPK-IKAAQFDIVNH 191
           +D  DY  N  ++   Q  A ++ D   LF     ++   I DK++ K  +  +FD  N 
Sbjct: 361 VDDRDYVGNKRLELAGQLLALLFED---LFKTFNTNLKSSI-DKVLKKPSRTTEFDAFNT 416

Query: 192 MR--QDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
           M+   D IT+    AI TGNW+++RF+M+R GVT VLSRLS+IS LGMMTRI+SQFEKTR
Sbjct: 417 MQFQGDHITSGFVRAISTGNWSLKRFRMDRAGVTHVLSRLSFISALGMMTRISSQFEKTR 476

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHI 309
           KVSGPR+LQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT+ DE+ ++K+ Y +G+E+I
Sbjct: 477 KVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDVDEEPIIKVAYMLGVENI 536

Query: 310 AMFNGEELSSPGVYLVFVNGILAGIT 335
               G E+  P  ++V VNG + G+T
Sbjct: 537 GQSTGTEIYGPNTFVVNVNGTIIGLT 562



 Score =  170 bits (430), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 90/160 (56%), Positives = 106/160 (66%), Gaps = 25/160 (15%)

Query: 674 CQP-------RPTFLNMHQFLGFK---RFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRP 723
           C+P       RP   + H  L  K    FDDFL +G +EYLDVNE NDS+IA+ E  I P
Sbjct: 606 CRPMIIVDNGRPMVTSEHVSLLKKAKLEFDDFLRQGLVEYLDVNEENDSYIALYEPDIVP 665

Query: 724 GVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCI 783
             TTHLEI PFTLLG  AG              L+PYPHHNQ+PRNTYQCAMGKQA+G I
Sbjct: 666 -TTTHLEIEPFTLLGAVAG--------------LIPYPHHNQSPRNTYQCAMGKQAIGAI 710

Query: 784 GYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
           GYNQ NRIDTL+Y  VY Q+PMV++KTI +  + KLPAG+
Sbjct: 711 GYNQLNRIDTLLYLSVYPQQPMVKTKTIELVGYDKLPAGQ 750



 Score =  103 bits (256), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 44/94 (46%), Positives = 69/94 (73%)

Query: 442 QKRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDD 501
            +R    ++   ++A + L++  +AH+PV+ M F+ KA+++A M RR+++A+ D  M+DD
Sbjct: 304 NRRIVGVRRPAWEEALEALATIVLAHVPVVGMDFRSKAIFVATMTRRVLMAVKDEKMVDD 363

Query: 502 RDYYGNKRLELAGSLLSLMFEDVFKRFNSELKET 535
           RDY GNKRLELAG LL+L+FED+FK FN+ LK +
Sbjct: 364 RDYVGNKRLELAGQLLALLFEDLFKTFNTNLKSS 397



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 39/65 (60%), Positives = 51/65 (78%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           I DKW L+ +FLK KGLVK HIDSF+YF++V+IK +++AN  + SDVDP F+LKY DI V
Sbjct: 30  IEDKWLLLPAFLKVKGLVKQHIDSFNYFVDVDIKNILKANNKVTSDVDPRFWLKYTDIRV 89

Query: 172 GIADK 176
           G  D+
Sbjct: 90  GFPDR 94



 Score = 78.6 bits (192), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/68 (52%), Positives = 49/68 (72%)

Query: 344 PEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSK 403
           P+  ++    +  TP+ECRLRD TYSAPI V I+YTRG   V R ++ IGR+PIML+S+K
Sbjct: 92  PDRTDADAIDKSVTPNECRLRDTTYSAPIVVTIQYTRGKNVVRRPNVNIGRLPIMLRSNK 151

Query: 404 CVLRNKTE 411
           CVL  ++E
Sbjct: 152 CVLTGRSE 159


>gi|380094948|emb|CCC07450.1| unnamed protein product [Sordaria macrospora k-hell]
          Length = 1150

 Score =  320 bits (819), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 148/264 (56%), Positives = 196/264 (74%), Gaps = 4/264 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+P+PHHNQ+PRNTYQCAMGKQA+G I YNQ NRIDTL+Y LVY QRPMV +KTI++ +
Sbjct: 684  GLIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLYTLVYPQRPMVITKTIQLIH 743

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+ VMSYSGYDIEDAL++NKASLDRGFGRC V+R     L+ Y N   DR
Sbjct: 744  YDKLPAGQNATVVVMSYSGYDIEDALVLNKASLDRGFGRCQVFRKYTAELQGYTNGRRDR 803

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPE 1089
            + G +++ +  KP+ +H  LD DG+   G ++   Q ++ K  P   +S   A    + +
Sbjct: 804  V-GGIMKDEDDKPIAKHAILDADGLAQVGSKVESGQTMIKKETPLDQISTGIAGDRGSDD 862

Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
            Y++   +Y+ S P+ ++KV++S N  +  LIK+  RQTRRPE+GDKFSSRHGQKGV+G+I
Sbjct: 863  YRDASTNYRISDPAIIDKVMISVNERENKLIKVQTRQTRRPELGDKFSSRHGQKGVVGII 922

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
            V +EDMPF++ G+ PDIIMNPHG 
Sbjct: 923  VNEEDMPFSDKGLRPDIIMNPHGF 946



 Score =  247 bits (631), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 115/203 (56%), Positives = 155/203 (76%), Gaps = 2/203 (0%)

Query: 1172 GLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSR 1231
            G+ G     +Y++   +Y+ S P+ ++KV++S N  +  LIK+  RQTRRPE+GDKFSSR
Sbjct: 853  GIAGDRGSDDYRDASTNYRISDPAIIDKVMISVNERENKLIKVQTRQTRRPELGDKFSSR 912

Query: 1232 HGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEG--NY 1289
            HGQKGV+G+IV +EDMPF++ G+ PDIIMNPHG+PSRMTVGKL E L GKA ++ G  +Y
Sbjct: 913  HGQKGVVGIIVNEEDMPFSDKGLRPDIIMNPHGFPSRMTVGKLFECLTGKASVIAGEKDY 972

Query: 1290 KEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQD 1349
              G AF    +  + + LI HG++++GKD F SGITGE +EAYIY+GP++YQ+LKHMVQD
Sbjct: 973  GFGDAFRSHPVESMGQALIDHGFSWEGKDYFTSGITGEPMEAYIYNGPIFYQRLKHMVQD 1032

Query: 1350 KIHARSRGPRVVLTRQPTGRRWK 1372
            K+H+RSRGPR +LTRQPT  R +
Sbjct: 1033 KMHSRSRGPRAILTRQPTEGRSR 1055



 Score =  179 bits (453), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 86/141 (60%), Positives = 108/141 (76%), Gaps = 2/141 (1%)

Query: 197 ITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVSGPRS 256
           I++ L  AIQ+GNWT++RF M R G+T VLSRLSYI+ LGMMTRI+SQFEKTRKVSGPR+
Sbjct: 423 ISHGLNRAIQSGNWTVKRFNMNRAGITHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRA 482

Query: 257 LQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMY--NIGIEHIAMFNG 314
           LQ SQWGMLC SDTPEGEACGLVKNLALMTHITT   E+ + K+++  +  +  I  + G
Sbjct: 483 LQPSQWGMLCTSDTPEGEACGLVKNLALMTHITTNVPEEPVKKMIFAADESVGPIREYTG 542

Query: 315 EELSSPGVYLVFVNGILAGIT 335
            E+ S G Y++ +NG    +T
Sbjct: 543 TEMHSKGSYIIHLNGTPFAVT 563



 Score =  160 bits (406), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 79/137 (57%), Positives = 96/137 (70%), Gaps = 15/137 (10%)

Query: 687 LGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELL 746
           LG   FD FL  G +EYLDVNE ND+ +A+ E  I    TTH+EI PFT+LG  AG    
Sbjct: 630 LGQATFDTFLTSGVVEYLDVNEENDTLVALQEDQI-TNSTTHMEIEPFTILGAVAG---- 684

Query: 747 QYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMV 806
                     L+P+PHHNQ+PRNTYQCAMGKQA+G I YNQ NRIDTL+Y LVY QRPMV
Sbjct: 685 ----------LIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLYTLVYPQRPMV 734

Query: 807 ESKTIRITNFHKLPAGK 823
            +KTI++ ++ KLPAG+
Sbjct: 735 ITKTIQLIHYDKLPAGQ 751



 Score = 93.2 bits (230), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 40/85 (47%), Positives = 65/85 (76%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           ++   ++  D L++  IAH+ V  + F  KA+Y+A+M+RR+++A  +P ++DDRD+ GNK
Sbjct: 310 RRNHAEEGLDALANLVIAHVTVEGLDFYPKAVYIAMMVRRVLMAAQNPKLVDDRDFVGNK 369

Query: 509 RLELAGSLLSLMFEDVFKRFNSELK 533
           RLELAG L+SL+FED+FK+F S++K
Sbjct: 370 RLELAGQLISLLFEDLFKKFISDVK 394



 Score = 74.3 bits (181), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 34/60 (56%), Positives = 47/60 (78%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGI 173
           DK+ LV +FLK KGLVK HIDS++YF+N EIK +++AN  + SD DP F+L++ DI VG+
Sbjct: 30  DKFHLVPAFLKVKGLVKQHIDSYNYFVNEEIKDIVKANRVVRSDQDPNFWLEFRDIRVGM 89



 Score = 63.9 bits (154), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 27/50 (54%), Positives = 37/50 (74%)

Query: 361 CRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
           CRLRDLTY+AP+ VDI YTR    +VR ++ + R+P+ML+S+KC L   T
Sbjct: 105 CRLRDLTYAAPVEVDIAYTRDKSVIVRKNIPLCRIPVMLKSAKCYLNGAT 154


>gi|336468399|gb|EGO56562.1| hypothetical protein NEUTE1DRAFT_83883 [Neurospora tetrasperma FGSC
            2508]
 gi|350289345|gb|EGZ70570.1| putative DNA-directed RNA polymerase III second-largest chain
            [Neurospora tetrasperma FGSC 2509]
          Length = 1155

 Score =  320 bits (819), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 148/264 (56%), Positives = 196/264 (74%), Gaps = 4/264 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+P+PHHNQ+PRNTYQCAMGKQA+G I YNQ NRIDTL+Y LVY QRPMV +KTI++ +
Sbjct: 689  GLIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLYTLVYPQRPMVITKTIQLIH 748

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+ VMSYSGYDIEDAL++NKASLDRGFGRC V+R     L+ Y N   DR
Sbjct: 749  YDKLPAGQNATVVVMSYSGYDIEDALVLNKASLDRGFGRCQVFRKYTAELQGYTNGRRDR 808

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPE 1089
            + G +++ +  KP+ +H  LD DG+   G ++   Q ++ K  P   +S   A    + +
Sbjct: 809  V-GGIMKDEDDKPIVKHAILDADGLAQVGSKVESGQTMIKKETPLDQISTGIAGDRGSDD 867

Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
            Y++   +Y+ S P+ ++KV++S N  +  LIK+  RQTRRPE+GDKFSSRHGQKGV+G+I
Sbjct: 868  YRDASTNYRISDPAIIDKVMISVNERENKLIKVQTRQTRRPELGDKFSSRHGQKGVVGII 927

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
            V +EDMPF++ G+ PDIIMNPHG 
Sbjct: 928  VNEEDMPFSDKGLRPDIIMNPHGF 951



 Score =  247 bits (631), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 115/203 (56%), Positives = 155/203 (76%), Gaps = 2/203 (0%)

Query: 1172 GLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSR 1231
            G+ G     +Y++   +Y+ S P+ ++KV++S N  +  LIK+  RQTRRPE+GDKFSSR
Sbjct: 858  GIAGDRGSDDYRDASTNYRISDPAIIDKVMISVNERENKLIKVQTRQTRRPELGDKFSSR 917

Query: 1232 HGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEG--NY 1289
            HGQKGV+G+IV +EDMPF++ G+ PDIIMNPHG+PSRMTVGKL E L GKA ++ G  +Y
Sbjct: 918  HGQKGVVGIIVNEEDMPFSDKGLRPDIIMNPHGFPSRMTVGKLFECLTGKASVIAGEKDY 977

Query: 1290 KEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQD 1349
              G AF    +  + + LI HG++++GKD F SGITGE +EAYIY+GP++YQ+LKHMVQD
Sbjct: 978  GFGDAFRSHPVESMGQALIDHGFSWEGKDYFTSGITGEPMEAYIYNGPIFYQRLKHMVQD 1037

Query: 1350 KIHARSRGPRVVLTRQPTGRRWK 1372
            K+H+RSRGPR +LTRQPT  R +
Sbjct: 1038 KMHSRSRGPRAILTRQPTEGRSR 1060



 Score =  178 bits (452), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 86/141 (60%), Positives = 108/141 (76%), Gaps = 2/141 (1%)

Query: 197 ITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVSGPRS 256
           I++ L  AIQ+GNWT++RF M R G+T VLSRLSYI+ LGMMTRI+SQFEKTRKVSGPR+
Sbjct: 428 ISHGLNRAIQSGNWTVKRFNMNRAGITHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRA 487

Query: 257 LQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMY--NIGIEHIAMFNG 314
           LQ SQWGMLC SDTPEGEACGLVKNLALMTHITT   E+ + K+++  +  +  I  + G
Sbjct: 488 LQPSQWGMLCTSDTPEGEACGLVKNLALMTHITTNVPEEPVKKMIFAADESVGPIREYTG 547

Query: 315 EELSSPGVYLVFVNGILAGIT 335
            E+ S G Y++ +NG    +T
Sbjct: 548 TEMHSKGSYIIHLNGTPFAVT 568



 Score =  160 bits (406), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 79/137 (57%), Positives = 96/137 (70%), Gaps = 15/137 (10%)

Query: 687 LGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELL 746
           LG   FD FL  G +EYLDVNE ND+ +A+ E  I    TTH+EI PFT+LG  AG    
Sbjct: 635 LGQATFDTFLTSGVVEYLDVNEENDTLVALQEDQI-TNSTTHMEIEPFTILGAVAG---- 689

Query: 747 QYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMV 806
                     L+P+PHHNQ+PRNTYQCAMGKQA+G I YNQ NRIDTL+Y LVY QRPMV
Sbjct: 690 ----------LIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLYTLVYPQRPMV 739

Query: 807 ESKTIRITNFHKLPAGK 823
            +KTI++ ++ KLPAG+
Sbjct: 740 ITKTIQLIHYDKLPAGQ 756



 Score = 93.2 bits (230), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 40/85 (47%), Positives = 65/85 (76%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           ++   ++  D L++  IAH+ V  + F  KA+Y+A+M+RR+++A  +P ++DDRD+ GNK
Sbjct: 315 RRNHAEEGLDALANLVIAHVTVEGLDFYPKAVYIAMMVRRVLMAAQNPKLVDDRDFVGNK 374

Query: 509 RLELAGSLLSLMFEDVFKRFNSELK 533
           RLELAG L+SL+FED+FK+F S++K
Sbjct: 375 RLELAGQLISLLFEDLFKKFISDVK 399



 Score = 74.3 bits (181), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 34/61 (55%), Positives = 48/61 (78%)

Query: 113 RDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           +DK+ LV +FLK KGLVK HIDS++YF+N EIK +++AN  + SD DP F+L++ DI VG
Sbjct: 29  QDKFHLVPAFLKVKGLVKQHIDSYNYFVNEEIKDIVRANRVVRSDQDPNFWLEFRDIRVG 88

Query: 173 I 173
           +
Sbjct: 89  M 89



 Score = 70.1 bits (170), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 30/54 (55%), Positives = 40/54 (74%)

Query: 357 TPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
           TP ECRLRDLTY+AP+ VDI YTR    +VR ++ + R+P+ML+S+KC L   T
Sbjct: 106 TPMECRLRDLTYAAPVEVDIAYTRDKNVIVRKNIPLCRIPVMLKSAKCYLNGAT 159


>gi|85083820|ref|XP_957195.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Neurospora
            crassa OR74A]
 gi|7800864|emb|CAB91222.1| probable DNA-directed RNA polymerase III second-largest chain
            [Neurospora crassa]
 gi|28918282|gb|EAA27959.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Neurospora
            crassa OR74A]
          Length = 1155

 Score =  320 bits (819), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 148/264 (56%), Positives = 196/264 (74%), Gaps = 4/264 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+P+PHHNQ+PRNTYQCAMGKQA+G I YNQ NRIDTL+Y LVY QRPMV +KTI++ +
Sbjct: 689  GLIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLYTLVYPQRPMVITKTIQLIH 748

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+ VMSYSGYDIEDAL++NKASLDRGFGRC V+R     L+ Y N   DR
Sbjct: 749  YDKLPAGQNATVVVMSYSGYDIEDALVLNKASLDRGFGRCQVFRKYTAELQGYTNGRRDR 808

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPE 1089
            + G +++ +  KP+ +H  LD DG+   G ++   Q ++ K  P   +S   A    + +
Sbjct: 809  V-GGIMKDEDDKPIVKHAILDADGLAQVGSKVESGQTMIKKETPLDQISTGIAGDRGSDD 867

Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
            Y++   +Y+ S P+ ++KV++S N  +  LIK+  RQTRRPE+GDKFSSRHGQKGV+G+I
Sbjct: 868  YRDASTNYRISDPAIIDKVMISVNERENKLIKVQTRQTRRPELGDKFSSRHGQKGVVGII 927

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
            V +EDMPF++ G+ PDIIMNPHG 
Sbjct: 928  VNEEDMPFSDKGLRPDIIMNPHGF 951



 Score =  247 bits (631), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 115/203 (56%), Positives = 155/203 (76%), Gaps = 2/203 (0%)

Query: 1172 GLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSR 1231
            G+ G     +Y++   +Y+ S P+ ++KV++S N  +  LIK+  RQTRRPE+GDKFSSR
Sbjct: 858  GIAGDRGSDDYRDASTNYRISDPAIIDKVMISVNERENKLIKVQTRQTRRPELGDKFSSR 917

Query: 1232 HGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEG--NY 1289
            HGQKGV+G+IV +EDMPF++ G+ PDIIMNPHG+PSRMTVGKL E L GKA ++ G  +Y
Sbjct: 918  HGQKGVVGIIVNEEDMPFSDKGLRPDIIMNPHGFPSRMTVGKLFECLTGKASVIAGEKDY 977

Query: 1290 KEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQD 1349
              G AF    +  + + LI HG++++GKD F SGITGE +EAYIY+GP++YQ+LKHMVQD
Sbjct: 978  GFGDAFRSHPVESMGQALIDHGFSWEGKDYFTSGITGEPMEAYIYNGPIFYQRLKHMVQD 1037

Query: 1350 KIHARSRGPRVVLTRQPTGRRWK 1372
            K+H+RSRGPR +LTRQPT  R +
Sbjct: 1038 KMHSRSRGPRAILTRQPTEGRSR 1060



 Score =  178 bits (452), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 86/141 (60%), Positives = 108/141 (76%), Gaps = 2/141 (1%)

Query: 197 ITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVSGPRS 256
           I++ L  AIQ+GNWT++RF M R G+T VLSRLSYI+ LGMMTRI+SQFEKTRKVSGPR+
Sbjct: 428 ISHGLNRAIQSGNWTVKRFNMNRAGITHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRA 487

Query: 257 LQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMY--NIGIEHIAMFNG 314
           LQ SQWGMLC SDTPEGEACGLVKNLALMTHITT   E+ + K+++  +  +  I  + G
Sbjct: 488 LQPSQWGMLCTSDTPEGEACGLVKNLALMTHITTNVPEEPVKKMIFAADESVGPIREYTG 547

Query: 315 EELSSPGVYLVFVNGILAGIT 335
            E+ S G Y++ +NG    +T
Sbjct: 548 TEMHSKGSYIIHLNGTPFAVT 568



 Score =  160 bits (406), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 79/137 (57%), Positives = 96/137 (70%), Gaps = 15/137 (10%)

Query: 687 LGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELL 746
           LG   FD FL  G +EYLDVNE ND+ +A+ E  I    TTH+EI PFT+LG  AG    
Sbjct: 635 LGQATFDTFLTSGVVEYLDVNEENDTLVALQEDQI-TNSTTHMEIEPFTILGAVAG---- 689

Query: 747 QYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMV 806
                     L+P+PHHNQ+PRNTYQCAMGKQA+G I YNQ NRIDTL+Y LVY QRPMV
Sbjct: 690 ----------LIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLYTLVYPQRPMV 739

Query: 807 ESKTIRITNFHKLPAGK 823
            +KTI++ ++ KLPAG+
Sbjct: 740 ITKTIQLIHYDKLPAGQ 756



 Score = 93.2 bits (230), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 40/85 (47%), Positives = 65/85 (76%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           ++   ++  D L++  IAH+ V  + F  KA+Y+A+M+RR+++A  +P ++DDRD+ GNK
Sbjct: 315 RRNHAEEGLDALANLVIAHVTVEGLDFYPKAVYIAMMVRRVLMAAQNPKLVDDRDFVGNK 374

Query: 509 RLELAGSLLSLMFEDVFKRFNSELK 533
           RLELAG L+SL+FED+FK+F S++K
Sbjct: 375 RLELAGQLISLLFEDLFKKFISDVK 399



 Score = 74.3 bits (181), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 34/61 (55%), Positives = 48/61 (78%)

Query: 113 RDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           +DK+ LV +FLK KGLVK HIDS++YF+N EIK +++AN  + SD DP F+L++ DI VG
Sbjct: 29  QDKFHLVPAFLKVKGLVKQHIDSYNYFVNEEIKDIVRANRVVRSDQDPNFWLEFRDIRVG 88

Query: 173 I 173
           +
Sbjct: 89  M 89



 Score = 70.1 bits (170), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 30/54 (55%), Positives = 40/54 (74%)

Query: 357 TPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
           TP ECRLRDLTY+AP+ VDI YTR    +VR ++ + R+P+ML+S+KC L   T
Sbjct: 106 TPMECRLRDLTYAAPVEVDIAYTRDKNVIVRKNIPLCRIPVMLKSAKCYLNGAT 159


>gi|358339203|dbj|GAA47313.1| DNA-directed RNA polymerase III subunit RPC2 [Clonorchis sinensis]
          Length = 1141

 Score =  319 bits (818), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 152/294 (51%), Positives = 203/294 (69%), Gaps = 13/294 (4%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYP HNQ+PRNTYQCAMGKQA+G +  NQQ R DTL Y +VY Q+P+V+SKTI++ +
Sbjct: 665  GLIPYPDHNQSPRNTYQCAMGKQAIGTVALNQQIRFDTLQYQMVYPQKPLVQSKTIQMMH 724

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F +LPAGQNA +A+MSYSGYD+EDALI+N+ASLDRGF R  VYR +   LK + N  +DR
Sbjct: 725  FDELPAGQNAIVAIMSYSGYDVEDALIVNRASLDRGFARACVYRRAGVHLKMHENAVYDR 784

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAIS-------- 1084
            ++GP ++ +T  P      L  DG    G +  +RQ+LVNK MP + V+A          
Sbjct: 785  LMGPSVDRETGLPRRGDELLQADGTAFVGARASDRQILVNKEMPVVKVNAAQDNAGQLGL 844

Query: 1085 -----MATPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSR 1139
                  +  E++  P  YKG  PSY+EKV+ S++  +  ++K+LLRQTRRPE+GDKFSSR
Sbjct: 845  HGGTHESMTEFRRCPADYKGIEPSYVEKVMFSTSEGNQAVVKVLLRQTRRPEVGDKFSSR 904

Query: 1140 HGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSV 1193
            HGQKGV+GLIV QEDMPF+  G+ PD+IMNPHG      + +  E+  S  G++
Sbjct: 905  HGQKGVVGLIVRQEDMPFSMHGLVPDVIMNPHGFPSRMTVGKLLELLGSKAGAI 958



 Score =  267 bits (682), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 134/253 (52%), Positives = 174/253 (68%), Gaps = 8/253 (3%)

Query: 1125 RQTRRPEIGDKF-----SSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGLKGC--D 1177
            R+T  P  GD+      ++  G +     I+  ++MP  +     D      GL G   +
Sbjct: 792  RETGLPRRGDELLQADGTAFVGARASDRQILVNKEMPVVKVNAAQDN-AGQLGLHGGTHE 850

Query: 1178 RITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV 1237
             +TE++  P  YKG  PSY+EKV+ S++  +  ++K+LLRQTRRPE+GDKFSSRHGQKGV
Sbjct: 851  SMTEFRRCPADYKGIEPSYVEKVMFSTSEGNQAVVKVLLRQTRRPEVGDKFSSRHGQKGV 910

Query: 1238 IGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGG 1297
            +GLIV QEDMPF+  G+ PD+IMNPHG+PSRMTVGKL+ELL  KAG +EG  ++G+AF G
Sbjct: 911  VGLIVRQEDMPFSMHGLVPDVIMNPHGFPSRMTVGKLLELLGSKAGAIEGRIRDGSAFSG 970

Query: 1298 TKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRG 1357
                 +   LI HG++Y GK++ YSG+TG  LEAYIY GPVYYQ+LKHMV DK+HARSRG
Sbjct: 971  DSAESLSRVLIEHGHHYLGKEVLYSGVTGAPLEAYIYFGPVYYQRLKHMVMDKVHARSRG 1030

Query: 1358 PRVVLTRQPTGRR 1370
            P   LTRQPT  R
Sbjct: 1031 PVTALTRQPTEGR 1043



 Score =  172 bits (435), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 90/202 (44%), Positives = 127/202 (62%), Gaps = 8/202 (3%)

Query: 134 DSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVNHMR 193
           D  D++ N  I+      A ++ DV   F     D+ + ++ KI  K +   FDI  H++
Sbjct: 349 DDRDFYGNKRIELAGSLLALLFEDVFKTFNE---DMWLTVS-KIDTKRRCTPFDISRHIK 404

Query: 194 QDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVSG 253
              IT  L  AI +GNW I+RF+M R GVTQ++SRLSY++ LG MTR+ S FEKTRKVSG
Sbjct: 405 TWMITEQLNRAISSGNWIIKRFRMMRHGVTQIVSRLSYVAALGHMTRMTSTFEKTRKVSG 464

Query: 254 PRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMFN 313
           PRS+  SQWG +CPSDTPEGEACGLVKN+ALM H+T E D+  +++++ +  +  +  F 
Sbjct: 465 PRSIHASQWGFVCPSDTPEGEACGLVKNVALMCHVTVEMDDTELIRLLSSYYVMPLHQF- 523

Query: 314 GEELSSPGVYLVFVNGILAGIT 335
              L     ++++VNG   G T
Sbjct: 524 ---LYGRTEFIIYVNGKPIGFT 542



 Score =  145 bits (367), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 73/136 (53%), Positives = 93/136 (68%), Gaps = 15/136 (11%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVT-THLEIAPFTLLGVCAGIELLQYNK 750
           +DDFL +G IEYLD NE ND  +A+ ES +  G   TH+EI P T+LGV AG        
Sbjct: 614 WDDFLKKGVIEYLDANELNDCLVAMDESYLSDGNKYTHMEIDPATILGVVAG-------- 665

Query: 751 RFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKT 810
                 L+PYP HNQ+PRNTYQCAMGKQA+G +  NQQ R DTL Y +VY Q+P+V+SKT
Sbjct: 666 ------LIPYPDHNQSPRNTYQCAMGKQAIGTVALNQQIRFDTLQYQMVYPQKPLVQSKT 719

Query: 811 IRITNFHKLPAGKCQI 826
           I++ +F +LPAG+  I
Sbjct: 720 IQMMHFDELPAGQNAI 735



 Score = 80.5 bits (197), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 41/107 (38%), Positives = 63/107 (58%)

Query: 426 MHSQRTSPLLSCKKLRQKRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVM 485
           +  +R  P L+  K  +      ++  V D + F+    I H+ +    F  +A++L  M
Sbjct: 275 LQQRRFRPGLTSGKPTRPDCPVSEEDVVLDMQRFIRDIIITHVEMEKFNFAPRALFLGQM 334

Query: 486 IRRMVLALSDPDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSEL 532
           +R ++LA       DDRD+YGNKR+ELAGSLL+L+FEDVFK FN ++
Sbjct: 335 VRYLILANEHQIPPDDRDFYGNKRIELAGSLLALLFEDVFKTFNEDM 381



 Score = 70.1 bits (170), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 46/70 (65%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQ 400
           V  P + +      + TPH+CRLRDLTY+  I VD+ + R ++ V +  ++IGRMP+ML+
Sbjct: 66  VRSPTVNDGGVVASRVTPHDCRLRDLTYAGEILVDVTFMRQNEIVSKRGVLIGRMPVMLK 125

Query: 401 SSKCVLRNKT 410
           SS C+L  KT
Sbjct: 126 SSVCILNGKT 135



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/60 (46%), Positives = 42/60 (70%), Gaps = 1/60 (1%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           + +K  LV SFL  KGLVK HIDS+++FI  EIK +++AN N  S  +  ++L+Y D++V
Sbjct: 8   LHNKHALVPSFLASKGLVKLHIDSYNHFIETEIKNIVRAN-NRVSVPEANWWLEYNDVYV 66


>gi|299741189|ref|XP_001834288.2| DNA-directed RNA polymerase [Coprinopsis cinerea okayama7#130]
 gi|298404597|gb|EAU87529.2| DNA-directed RNA polymerase [Coprinopsis cinerea okayama7#130]
          Length = 1149

 Score =  319 bits (818), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 152/264 (57%), Positives = 192/264 (72%), Gaps = 4/264 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ NRIDTL+Y  VY Q+PMV+++TI +  
Sbjct: 681  GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQMNRIDTLLYLSVYPQQPMVKTRTIELIG 740

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + +LPAGQNAT+A+MSYSGYDIEDALI+NKASLDRG+GRC V R +  +L++YPN T DR
Sbjct: 741  YDRLPAGQNATVAIMSYSGYDIEDALILNKASLDRGYGRCQVLRKNATLLRKYPNGTFDR 800

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAI---SMATPE 1089
            +    L+ + +    R+  +  DG+   GE++    + VNK  PT +         A+  
Sbjct: 801  LADAPLDENGQIQ-RRYDIVQADGLPGVGERVDPGDIYVNKQSPTNATDNTFTGQAASVP 859

Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
            YK  P+SYK  V   ++KV++S    D  LIK+L+RQTRRPE+GDKFSSRHGQKGV GLI
Sbjct: 860  YKNAPLSYKSPVCGMIDKVMISDTDNDQTLIKVLIRQTRRPELGDKFSSRHGQKGVCGLI 919

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
            V QED+PFNE GI PD IMNPHG 
Sbjct: 920  VNQEDLPFNEDGIVPDTIMNPHGF 943



 Score =  270 bits (690), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 128/198 (64%), Positives = 152/198 (76%), Gaps = 9/198 (4%)

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
            YK  P+SYK  V   ++KV++S    D  LIK+L+RQTRRPE+GDKFSSRHGQKGV GLI
Sbjct: 860  YKNAPLSYKSPVCGMIDKVMISDTDNDQTLIKVLIRQTRRPELGDKFSSRHGQKGVCGLI 919

Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
            V QED+PFNE GI PD IMNPHG+PSRMTVGK+IELLAGKAG++ G  + GTAFGG+K+ 
Sbjct: 920  VNQEDLPFNEDGIVPDTIMNPHGFPSRMTVGKMIELLAGKAGVLTGKLQYGTAFGGSKVE 979

Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYY---------QKLKHMVQDKIH 1352
            D+   LI HG++Y GKD+  SGITGE LEAY+Y GP+YY         QKLKHMV DK+H
Sbjct: 980  DMSRILIEHGFSYGGKDMLTSGITGEPLEAYVYFGPIYYQKAILTVYFQKLKHMVMDKMH 1039

Query: 1353 ARSRGPRVVLTRQPTGRR 1370
            AR+RGPR  LTRQPT  R
Sbjct: 1040 ARARGPRATLTRQPTEGR 1057



 Score =  211 bits (537), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 107/206 (51%), Positives = 146/206 (70%), Gaps = 7/206 (3%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPK-IKAAQFDIVN- 190
           +D  DY  N  ++   Q  A ++ D   LF     ++   I DK++ K  + ++FD  N 
Sbjct: 359 VDDRDYVGNKRLELAGQLLALLFED---LFKTYNSNLKSAI-DKVLKKPSRTSEFDAFNT 414

Query: 191 -HMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
             M+ D +T+    AI TGNW+++RFKMER GVT VLSRLS+IS LGMMTRI+SQFEKTR
Sbjct: 415 MQMQGDHLTSGFVRAISTGNWSLKRFKMERAGVTHVLSRLSFISALGMMTRISSQFEKTR 474

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHI 309
           KVSGPR+LQ SQWG+LCPSDTPEGEACGLVKNLALMTHITT+ +E  ++++ + +G+E I
Sbjct: 475 KVSGPRALQPSQWGVLCPSDTPEGEACGLVKNLALMTHITTDVEEGPIIRLAFMLGVEDI 534

Query: 310 AMFNGEELSSPGVYLVFVNGILAGIT 335
           ++  G E+  P  Y+V++NG + G+T
Sbjct: 535 SLTTGTEIYGPNSYVVYINGTIIGVT 560



 Score =  162 bits (411), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 78/132 (59%), Positives = 95/132 (71%), Gaps = 15/132 (11%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKR 751
           FDDFL +G +EYLDVNE ND+ IA+ E  I P  TTHLEI PFT+LG  AG         
Sbjct: 632 FDDFLRKGLVEYLDVNEENDTFIALHEHDIVP-TTTHLEIEPFTILGAVAG--------- 681

Query: 752 FHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTI 811
                L+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ NRIDTL+Y  VY Q+PMV+++TI
Sbjct: 682 -----LIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQMNRIDTLLYLSVYPQQPMVKTRTI 736

Query: 812 RITNFHKLPAGK 823
            +  + +LPAG+
Sbjct: 737 ELIGYDRLPAGQ 748



 Score = 99.0 bits (245), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 42/80 (52%), Positives = 63/80 (78%)

Query: 454 DDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELA 513
           ++A + L++  +AH+PV  + F+ KA+++A M RR+++A+ D  M+DDRDY GNKRLELA
Sbjct: 314 EEALEALATIVLAHVPVQGLDFRAKAIFVATMTRRVLMAMDDESMVDDRDYVGNKRLELA 373

Query: 514 GSLLSLMFEDVFKRFNSELK 533
           G LL+L+FED+FK +NS LK
Sbjct: 374 GQLLALLFEDLFKTYNSNLK 393



 Score = 88.6 bits (218), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 38/65 (58%), Positives = 52/65 (80%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           + DKW L+ +FLK KGLVK HIDSF+YF++V+IK +++AN  + SDVDP F+LKY DI+V
Sbjct: 29  VEDKWLLLPAFLKVKGLVKQHIDSFNYFVDVDIKNIVKANNKVTSDVDPRFWLKYTDINV 88

Query: 172 GIADK 176
           G  D+
Sbjct: 89  GFPDR 93



 Score = 81.3 bits (199), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 39/68 (57%), Positives = 51/68 (75%), Gaps = 1/68 (1%)

Query: 344 PEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSK 403
           P+  E     ++ TPHECRLRD TYSAPI V I+YTRG + +V+ ++ IGR+PIML+S+K
Sbjct: 91  PDRNEMEAIDKRVTPHECRLRDTTYSAPIIVTIQYTRG-KSIVQRNVNIGRLPIMLRSNK 149

Query: 404 CVLRNKTE 411
           CVL  KTE
Sbjct: 150 CVLTGKTE 157


>gi|388858433|emb|CCF48027.1| probable DNA-directed RNA polymerase III, 130 KD subunit [Ustilago
            hordei]
          Length = 1169

 Score =  319 bits (818), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 155/271 (57%), Positives = 195/271 (71%), Gaps = 10/271 (3%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PR TYQCAMGKQA+  I YNQ  RIDTL+Y +VY Q+PMV+++TI +  
Sbjct: 701  GLIPYPHHNQSPRLTYQCAMGKQAVSAIAYNQFLRIDTLLYLMVYPQQPMVKTRTIDLIG 760

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNA +AVMS+SGYDIEDAL++NKASLDRGFGRC   + S  +L++YPN THDR
Sbjct: 761  YDKLPAGQNAMVAVMSFSGYDIEDALLLNKASLDRGFGRCQTMKKSSTILRKYPNGTHDR 820

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPT----ISVSAI----- 1083
            +    ++  T K   R+  L+ DGI   GE++ +  V VNK  P      S +AI     
Sbjct: 821  LADAPVDESTGKRQKRYDILEADGIAGVGERVEQGDVFVNKQTPVNANDNSSAAIMIGAS 880

Query: 1084 -SMATPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQ 1142
             + A+  YK  P+SYK  V  Y+++VL++    D  LIK L+RQTRRPE+GDKFSSRHGQ
Sbjct: 881  NAAASVAYKSAPLSYKPPVSGYVDQVLITDTDSDQTLIKALIRQTRRPELGDKFSSRHGQ 940

Query: 1143 KGVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            KGV GLIV QEDMPF++ GI PDIIMNPHG 
Sbjct: 941  KGVCGLIVNQEDMPFSDQGINPDIIMNPHGF 971



 Score =  279 bits (713), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 137/233 (58%), Positives = 169/233 (72%), Gaps = 8/233 (3%)

Query: 1146 IGLIVEQEDM------PFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEK 1199
            +G  VEQ D+      P N +      IM   G         YK  P+SYK  V  Y+++
Sbjct: 848  VGERVEQGDVFVNKQTPVNANDNSSAAIMI--GASNAAASVAYKSAPLSYKPPVSGYVDQ 905

Query: 1200 VLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDII 1259
            VL++    D  LIK L+RQTRRPE+GDKFSSRHGQKGV GLIV QEDMPF++ GI PDII
Sbjct: 906  VLITDTDSDQTLIKALIRQTRRPELGDKFSSRHGQKGVCGLIVNQEDMPFSDQGINPDII 965

Query: 1260 MNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDI 1319
            MNPHG+PSRMTVGK+IELL+GKAG++ GN + GTAFGG+K+ D+ + L+ HGYNY GK+ 
Sbjct: 966  MNPHGFPSRMTVGKMIELLSGKAGVITGNLQYGTAFGGSKVEDMSQILVDHGYNYGGKET 1025

Query: 1320 FYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
              SGITG+ LE Y+Y GP+YYQ+LKHMVQDK+HAR+RGPR VLTRQPT  R +
Sbjct: 1026 LTSGITGQPLECYVYFGPIYYQRLKHMVQDKMHARARGPRAVLTRQPTEGRSR 1078



 Score =  213 bits (542), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 109/206 (52%), Positives = 142/206 (68%), Gaps = 7/206 (3%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKI-KAAQFDIVN- 190
           +D  DY  N  ++   Q  A ++ D   LF     D+ + I DK++ K  +  +FD  N 
Sbjct: 376 VDDRDYVGNKRLELAGQLLALLFED---LFKKFNSDLKINI-DKVLKKPNRTVEFDAFNQ 431

Query: 191 -HMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
            H   D IT     AI TGNW+++RFKMER G+T VLSRLSYI+ LGMMTRI+SQFEKTR
Sbjct: 432 FHFNGDYITAGFVRAISTGNWSLKRFKMERAGITHVLSRLSYIAALGMMTRISSQFEKTR 491

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHI 309
           KVSGPR+LQ SQWGMLCPSDTPEGEACGLVKNLAL THITT+ +E+ + K+ + +G+E +
Sbjct: 492 KVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALTTHITTDVEEEPIAKLAFTLGVEDV 551

Query: 310 AMFNGEELSSPGVYLVFVNGILAGIT 335
            +  G EL  P  Y+V++NG + G+T
Sbjct: 552 HLLTGAELYRPDSYIVYLNGNVLGVT 577



 Score =  164 bits (415), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 82/150 (54%), Positives = 104/150 (69%), Gaps = 15/150 (10%)

Query: 675 QPRPTFLNMHQF-LGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAP 733
           QPR T  ++ Q   G + F+DFL+ G +EYLDVNE NDS+IA+ E  I+P  TTHLEI P
Sbjct: 633 QPRVTDSHIQQLKAGIRCFNDFLHNGLLEYLDVNEENDSNIALYERDIKPRYTTHLEIEP 692

Query: 734 FTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDT 793
           FT+LG  AG              L+PYPHHNQ+PR TYQCAMGKQA+  I YNQ  RIDT
Sbjct: 693 FTILGAVAG--------------LIPYPHHNQSPRLTYQCAMGKQAVSAIAYNQFLRIDT 738

Query: 794 LMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
           L+Y +VY Q+PMV+++TI +  + KLPAG+
Sbjct: 739 LLYLMVYPQQPMVKTRTIDLIGYDKLPAGQ 768



 Score =  102 bits (255), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 44/80 (55%), Positives = 65/80 (81%)

Query: 454 DDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELA 513
           ++A D L++  +AH+PV  + F+ KA+Y+A M+RR+++A+ D   +DDRDY GNKRLELA
Sbjct: 331 EEALDVLATVIMAHVPVERLNFRPKAIYIASMVRRVLVAMQDEKKVDDRDYVGNKRLELA 390

Query: 514 GSLLSLMFEDVFKRFNSELK 533
           G LL+L+FED+FK+FNS+LK
Sbjct: 391 GQLLALLFEDLFKKFNSDLK 410



 Score = 81.3 bits (199), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 36/58 (62%), Positives = 47/58 (81%)

Query: 354 RQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKTE 411
           R  TP ECRLRD+TYSA I V+IEYTRG + + R ++ IGR+P+ML+S+KCVL NK+E
Sbjct: 118 RPITPQECRLRDITYSAHIFVNIEYTRGGKIIRRKNVAIGRIPVMLRSNKCVLSNKSE 175



 Score = 80.9 bits (198), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 34/61 (55%), Positives = 49/61 (80%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           + DKW+LV +FL+ KGLVK HI+S++YF++ ++K +++AN  I SD+DP FYLKY DI V
Sbjct: 46  VEDKWELVPAFLQVKGLVKQHIESYNYFVDHDLKNIIKANEKITSDIDPKFYLKYTDITV 105

Query: 172 G 172
           G
Sbjct: 106 G 106


>gi|451845872|gb|EMD59183.1| hypothetical protein COCSADRAFT_175739 [Cochliobolus sativus ND90Pr]
          Length = 1215

 Score =  319 bits (817), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 154/261 (59%), Positives = 188/261 (72%), Gaps = 7/261 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ NRIDTL+Y +VY Q+PMV+++TI +T 
Sbjct: 760  GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLYLMVYPQQPMVKTRTIELTK 819

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+AVMSYSGYDIEDALI+NKAS DRGFGRC V++     LK Y N T DR
Sbjct: 820  YDKLPAGQNATVAVMSYSGYDIEDALILNKASCDRGFGRCQVFKKHVTPLKTYANNTSDR 879

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKE 1092
            I    L+         H+A+ QDGI   G ++      + KS+P  +      A+  YK+
Sbjct: 880  INAGALDVANSN----HQAIGQDGIAQVGARLEAGDAFLLKSIPQDTAGP---ASNLYKD 932

Query: 1093 VPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQ 1152
             P  YK    SY++K  ++ N     LIK+L+RQTRRPE+GDKFSSRHGQKG  GLIV+Q
Sbjct: 933  KPERYKLPDCSYIDKACITENESGTTLIKLLMRQTRRPELGDKFSSRHGQKGTTGLIVQQ 992

Query: 1153 EDMPFNESGICPDIIMNPHGL 1173
            EDMPFN+ GICPDIIMNPHG 
Sbjct: 993  EDMPFNDQGICPDIIMNPHGF 1013



 Score =  264 bits (675), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 119/191 (62%), Positives = 151/191 (79%)

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
            YK+ P  YK    SY++K  ++ N     LIK+L+RQTRRPE+GDKFSSRHGQKG  GLI
Sbjct: 930  YKDKPERYKLPDCSYIDKACITENESGTTLIKLLMRQTRRPELGDKFSSRHGQKGTTGLI 989

Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
            V+QEDMPFN+ GICPDIIMNPHG+PSRMTVGK++ELL+GKAG++ G  + GTAFGG+ + 
Sbjct: 990  VQQEDMPFNDQGICPDIIMNPHGFPSRMTVGKMMELLSGKAGVLNGTLEYGTAFGGSTVE 1049

Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
            D+ + L+  G++Y GKD   SGITGEA + Y + GP+YYQKLKHMVQDK+H+R+RGPR +
Sbjct: 1050 DMSQILVEKGFSYTGKDYLTSGITGEAHQFYTFFGPIYYQKLKHMVQDKMHSRARGPRAI 1109

Query: 1362 LTRQPTGRRWK 1372
            LTRQPT  R +
Sbjct: 1110 LTRQPTEGRAR 1120



 Score =  202 bits (514), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 100/164 (60%), Positives = 127/164 (77%), Gaps = 3/164 (1%)

Query: 175 DKIIPK-IKAAQFDIVNH--MRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSY 231
           DK++ K ++A +FD  +H  + ++ IT  +  AI TGNW+++RFKMER GVT VLSRLSY
Sbjct: 476 DKVLKKQVRAQEFDAFSHFSVHKNHITMGVERAIATGNWSLKRFKMERAGVTHVLSRLSY 535

Query: 232 ISGLGMMTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTE 291
           I+ LGMMTRI+SQFEKTRKVSGPR+LQ SQ+GMLC SDTPEGEACGLVKNLALMTHITTE
Sbjct: 536 IAALGMMTRISSQFEKTRKVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTE 595

Query: 292 NDEKNMLKIMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAGIT 335
           +D+  + KI++ +G E I    GEE+ + GVY V +NG    +T
Sbjct: 596 DDDDPVRKIVFMLGAEDICSQTGEEIHAEGVYSVCLNGTPIAVT 639



 Score =  162 bits (411), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 79/136 (58%), Positives = 97/136 (71%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G   F+DFL  G +EYLD NE ND++IA+ ES I    TTHLEI PFT+LG  AG     
Sbjct: 707 GTMEFEDFLTRGLVEYLDTNEENDTNIALKESEINQH-TTHLEIEPFTILGAVAG----- 760

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ NRIDTL+Y +VY Q+PMV+
Sbjct: 761 ---------LIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLYLMVYPQQPMVK 811

Query: 808 SKTIRITNFHKLPAGK 823
           ++TI +T + KLPAG+
Sbjct: 812 TRTIELTKYDKLPAGQ 827



 Score = 96.3 bits (238), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 41/79 (51%), Positives = 61/79 (77%)

Query: 455 DARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAG 514
           +A + LS+  + H+PV    ++ KA+Y+A+M RR+++A+ DP ++DDRDY GNKRLEL+G
Sbjct: 394 EAIECLSNVVLPHVPVEGTNYRPKALYVALMARRVLMAMQDPKLVDDRDYVGNKRLELSG 453

Query: 515 SLLSLMFEDVFKRFNSELK 533
            +LSL+FED FKRFN + K
Sbjct: 454 QMLSLLFEDHFKRFNHDFK 472



 Score = 81.6 bits (200), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 36/55 (65%), Positives = 46/55 (83%)

Query: 357 TPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKTE 411
           TP+ECRLRD+TY+API VDI YTRG+ +V R+ + IGRMPIML+S+KCVL  K +
Sbjct: 183 TPNECRLRDMTYAAPIVVDIIYTRGNAKVKRTGIKIGRMPIMLKSNKCVLAGKND 237



 Score = 77.4 bits (189), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 32/59 (54%), Positives = 47/59 (79%)

Query: 113 RDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           RDKW L+ +FLK KGLVK H+DS+++F++V++KK+++AN  + SD DP F L+Y DI V
Sbjct: 106 RDKWNLLPAFLKTKGLVKQHVDSYNHFVDVDLKKIIKANRFVRSDFDPKFLLEYTDIRV 164


>gi|358060336|dbj|GAA93741.1| hypothetical protein E5Q_00387 [Mixia osmundae IAM 14324]
          Length = 1152

 Score =  318 bits (815), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 147/264 (55%), Positives = 194/264 (73%), Gaps = 6/264 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+P+PHHNQ+PRNTYQCAMGKQA+G I YNQ  RIDTL+Y +VY QRP+V +KTI +  
Sbjct: 694  GLIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQLARIDTLLYLMVYPQRPLVTTKTIELVK 753

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + +LPAGQNA +AVMS+SGYDIEDALI+N+AS+DRGFGRC V+R     +KQYPN THDR
Sbjct: 754  YDQLPAGQNAMVAVMSFSGYDIEDALILNRASVDRGFGRCQVFRKYSTYIKQYPNNTHDR 813

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT---PE 1089
            +  P      R   +R   +D DG+ A G+++ E  + VNK  P+ +    S A+     
Sbjct: 814  LADPPPPDSDR---HRKYKVDADGLPAVGDRVKEGDIYVNKQTPSNATDNSSTASSMPSH 870

Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
            +++  ++Y+ ++  +++KV++S       L+K+L+RQTRRPE+GDKFSSRHGQKGV GLI
Sbjct: 871  WRDAVMTYRANMNGHIDKVMLSDMENGTQLVKILMRQTRRPELGDKFSSRHGQKGVCGLI 930

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
            V QEDMPF + GICPDIIMNPHG 
Sbjct: 931  VPQEDMPFTDQGICPDIIMNPHGF 954



 Score =  263 bits (672), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 117/191 (61%), Positives = 155/191 (81%)

Query: 1180 TEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1239
            + +++  ++Y+ ++  +++KV++S       L+K+L+RQTRRPE+GDKFSSRHGQKGV G
Sbjct: 869  SHWRDAVMTYRANMNGHIDKVMLSDMENGTQLVKILMRQTRRPELGDKFSSRHGQKGVCG 928

Query: 1240 LIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTK 1299
            LIV QEDMPF + GICPDIIMNPHG+PSRMTVGK++ELL+GKAG++ G ++ GTAFGG+K
Sbjct: 929  LIVPQEDMPFTDQGICPDIIMNPHGFPSRMTVGKMLELLSGKAGILGGKFEYGTAFGGSK 988

Query: 1300 LVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPR 1359
              D+   LI+ GY+Y GKD   SGITG+ALE+Y++ GP++YQKLKHMV DK+HARSRGPR
Sbjct: 989  AEDMSRALIQAGYSYAGKDYLTSGITGQALESYVFFGPIFYQKLKHMVIDKMHARSRGPR 1048

Query: 1360 VVLTRQPTGRR 1370
              LTRQPT  R
Sbjct: 1049 ATLTRQPTEGR 1059



 Score =  213 bits (543), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 109/205 (53%), Positives = 144/205 (70%), Gaps = 7/205 (3%)

Query: 134 DSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPK-IKAAQFD--IVN 190
           D  DY  N  ++   Q  + ++ D   LF L   D    + DK++ K  +  +FD   V 
Sbjct: 373 DDRDYVGNKRLELAGQLLSLLFED---LFKLFNRDFKTNV-DKMLKKPSRTNEFDGLKVL 428

Query: 191 HMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRK 250
            M+  +IT+    AI TGNW+++RF+MER G+T VLSRLSYIS LGMMTRI SQFEKTRK
Sbjct: 429 SMQTGSITDGFVRAIATGNWSLKRFRMERAGITHVLSRLSYISALGMMTRITSQFEKTRK 488

Query: 251 VSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIA 310
           VSGPR+LQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT+ +E ++ ++ Y +G+E + 
Sbjct: 489 VSGPRALQASQWGMLCPSDTPEGEACGLVKNLALMTHITTDVEETSLWRLAYVLGLEDVC 548

Query: 311 MFNGEELSSPGVYLVFVNGILAGIT 335
              G EL +PG ++V++NG+L G+T
Sbjct: 549 NVTGTELYAPGTFVVYLNGVLLGLT 573



 Score =  166 bits (421), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 81/135 (60%), Positives = 96/135 (71%), Gaps = 15/135 (11%)

Query: 689 FKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQY 748
            K FDDFL EG IEYLDVNE ND+HIA+ E  I+   TTHLEI PFTLLG  AG      
Sbjct: 642 MKTFDDFLKEGLIEYLDVNEENDAHIALYERDIKK-FTTHLEIEPFTLLGAVAG------ 694

Query: 749 NKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVES 808
                   L+P+PHHNQ+PRNTYQCAMGKQA+G I YNQ  RIDTL+Y +VY QRP+V +
Sbjct: 695 --------LIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQLARIDTLLYLMVYPQRPLVTT 746

Query: 809 KTIRITNFHKLPAGK 823
           KTI +  + +LPAG+
Sbjct: 747 KTIELVKYDQLPAGQ 761



 Score =  104 bits (260), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 48/87 (55%), Positives = 68/87 (78%), Gaps = 1/87 (1%)

Query: 448 YKKTPV-DDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYG 506
           + + PV ++A + L++  +AH+PV N+ F+ KA+Y+A+MIRR++ A+ DP M DDRDY G
Sbjct: 320 FVRRPVAEEALELLATLVLAHVPVENLNFRPKAIYMALMIRRVLAAMLDPTMTDDRDYVG 379

Query: 507 NKRLELAGSLLSLMFEDVFKRFNSELK 533
           NKRLELAG LLSL+FED+FK FN + K
Sbjct: 380 NKRLELAGQLLSLLFEDLFKLFNRDFK 406



 Score = 74.3 bits (181), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 32/53 (60%), Positives = 43/53 (81%)

Query: 357 TPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNK 409
           TP ECRLRD+TY+API VD+ Y +GS+ VV    +IGR+P+ML+S+KCVL +K
Sbjct: 110 TPQECRLRDMTYAAPIYVDVIYAKGSRNVVSKKQLIGRIPVMLRSNKCVLWDK 162



 Score = 70.5 bits (171), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 51/68 (75%), Gaps = 2/68 (2%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLM--QANANIYSDVDPLFYLKYLDI 169
           + DKW L+ +FL  KGLVK HIDS+++ ++VE++ ++  +AN  + SDVDP ++L+Y DI
Sbjct: 32  VEDKWHLLPAFLAVKGLVKQHIDSYNHLVDVELRAIVLSEANRRVVSDVDPNWFLEYTDI 91

Query: 170 HVGIADKI 177
           +VG  +++
Sbjct: 92  YVGSPERL 99


>gi|402076059|gb|EJT71482.1| hypothetical protein GGTG_10739 [Gaeumannomyces graminis var. tritici
            R3-111a-1]
          Length = 1158

 Score =  318 bits (815), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 148/264 (56%), Positives = 194/264 (73%), Gaps = 3/264 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+P+PHHNQ+PRNTYQCAMGKQA+G I YNQ NRIDTL+Y LVY QRPMV SKTI + +
Sbjct: 691  GLIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLYTLVYPQRPMVISKTIELIH 750

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+ VMSYSGYDIEDAL++NKAS+DRGFGRC V+R     L+ Y N   + 
Sbjct: 751  YDKLPAGQNATVVVMSYSGYDIEDALVLNKASVDRGFGRCQVFRKHTAELQTYANNRSEE 810

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPE 1089
            I  P ++  T +   ++ A+D DG+   G +I   +V++ K  P    S      + + +
Sbjct: 811  IGRPEIDEATGRHTDKNVAIDGDGLATVGYRIHAGEVMIKKLTPIDQGSTGIGNDVGSND 870

Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
            Y++  +SY+   PSY++KV+VS   ++  L+K+  RQTRRPE+GDKFSSRHGQKGV+G+I
Sbjct: 871  YRDTSISYRTPDPSYIDKVMVSQTEKEHILVKVQTRQTRRPELGDKFSSRHGQKGVVGII 930

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
            V+QEDMPF +SG+ PDIIMNPHG 
Sbjct: 931  VDQEDMPFQDSGLVPDIIMNPHGF 954



 Score =  261 bits (668), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 132/263 (50%), Positives = 181/263 (68%), Gaps = 31/263 (11%)

Query: 1129 RPEIGDKFSSRHGQKGVI---------------GLIVEQEDMPFNE--SGICPDIIMNPH 1171
            RPEI D+ + RH  K V                G ++ ++  P ++  +GI  D+  N  
Sbjct: 813  RPEI-DEATGRHTDKNVAIDGDGLATVGYRIHAGEVMIKKLTPIDQGSTGIGNDVGSN-- 869

Query: 1172 GLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSR 1231
                     +Y++  +SY+   PSY++KV+VS   ++  L+K+  RQTRRPE+GDKFSSR
Sbjct: 870  ---------DYRDTSISYRTPDPSYIDKVMVSQTEKEHILVKVQTRQTRRPELGDKFSSR 920

Query: 1232 HGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGN--Y 1289
            HGQKGV+G+IV+QEDMPF +SG+ PDIIMNPHG+PSRMTVGKL E L GKA ++EG   Y
Sbjct: 921  HGQKGVVGIIVDQEDMPFQDSGLVPDIIMNPHGFPSRMTVGKLFECLTGKASVVEGEKRY 980

Query: 1290 KEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQD 1349
              G AF    + ++ E L+RHG++++GKD F SGITGE LEAYI++GP+YYQ+LKHMVQD
Sbjct: 981  GYGDAFRTHPVEEMGEALVRHGFSWEGKDYFTSGITGEPLEAYIFNGPIYYQRLKHMVQD 1040

Query: 1350 KIHARSRGPRVVLTRQPTGRRWK 1372
            K+H+R++GPR +LTRQPT  R +
Sbjct: 1041 KMHSRAKGPRAILTRQPTEGRSR 1063



 Score =  187 bits (474), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 103/216 (47%), Positives = 141/216 (65%), Gaps = 9/216 (4%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKI-KAAQFDIVNH 191
           +D  D+  N  ++   Q  + ++ D   LF     D+   I DK++ K  +   FD +N 
Sbjct: 367 VDDRDFVGNKRLELAGQMLSLLFED---LFKKFITDLRFNI-DKVLRKSNRGVPFDPLNS 422

Query: 192 MRQDT--ITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
           +   +  IT  +  +I +GNW+++RF M R GVT VLSRLSYIS LGMMTRI+SQFEKTR
Sbjct: 423 ITATSGHITAGMNRSISSGNWSVKRFNMNRAGVTHVLSRLSYISALGMMTRISSQFEKTR 482

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNI--GIE 307
           KVSGPR+LQ SQWGMLC SDTPEGEACGLVKNLA+MTHITT+  E+ + + + ++  G E
Sbjct: 483 KVSGPRALQPSQWGMLCTSDTPEGEACGLVKNLAMMTHITTQFPEEPVKQWILSLDSGAE 542

Query: 308 HIAMFNGEELSSPGVYLVFVNGILAGITCHHKEVCK 343
            +  F+G E+  PG Y+V VNG    +T + +E  +
Sbjct: 543 SLINFSGSEMHRPGSYMVNVNGTPFALTANPEEFAR 578



 Score =  165 bits (417), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 80/136 (58%), Positives = 97/136 (71%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G  +FDDFL +G +EYLDVNE ND+ +A+ E  + P   THLEI PFT+LG  AG     
Sbjct: 638 GRAQFDDFLNKGIVEYLDVNEENDTLVALYEKDVTPA-HTHLEIEPFTILGAVAG----- 691

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+P+PHHNQ+PRNTYQCAMGKQA+G I YNQ NRIDTL+Y LVY QRPMV 
Sbjct: 692 ---------LIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLYTLVYPQRPMVI 742

Query: 808 SKTIRITNFHKLPAGK 823
           SKTI + ++ KLPAG+
Sbjct: 743 SKTIELIHYDKLPAGQ 758



 Score = 92.0 bits (227), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 37/85 (43%), Positives = 65/85 (76%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           ++   ++  + L++  I H+P++ + F  KA+Y+A+M+RR+++A  D  ++DDRD+ GNK
Sbjct: 317 RRNNTEEGLEALANMIIGHVPIVGLDFYPKAIYVAMMVRRVLMAAQDFKLVDDRDFVGNK 376

Query: 509 RLELAGSLLSLMFEDVFKRFNSELK 533
           RLELAG +LSL+FED+FK+F ++L+
Sbjct: 377 RLELAGQMLSLLFEDLFKKFITDLR 401



 Score = 75.9 bits (185), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/72 (50%), Positives = 48/72 (66%), Gaps = 2/72 (2%)

Query: 341 VCKPEIEE--SFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIM 398
           V KP   E   F    + +P ECRLRD+TY+API VDI Y R  ++V+R ++ +GRMPIM
Sbjct: 87  VGKPSRAEFTDFKAHNEVSPMECRLRDMTYAAPIKVDIAYFRDKKKVIRRNVTLGRMPIM 146

Query: 399 LQSSKCVLRNKT 410
           L+SS+C L   T
Sbjct: 147 LKSSQCWLSGAT 158



 Score = 75.1 bits (183), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/60 (55%), Positives = 48/60 (80%)

Query: 113 RDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           +DKW+L+ +FLK KGLVK HIDS+++FIN EIK+++ AN  + SDV+  F+L++ DI VG
Sbjct: 29  KDKWQLLPAFLKVKGLVKQHIDSYNFFINHEIKEIVNANRIVRSDVESGFFLEFTDIRVG 88


>gi|255083755|ref|XP_002508452.1| predicted protein [Micromonas sp. RCC299]
 gi|226523729|gb|ACO69710.1| predicted protein [Micromonas sp. RCC299]
          Length = 1159

 Score =  318 bits (814), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 155/267 (58%), Positives = 196/267 (73%), Gaps = 8/267 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            G++PYPHHNQ+PRNTYQCAMGKQAMG I +NQ NR+DTLMY LVY Q+P+V++KTI +  
Sbjct: 692  GIIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLNRMDTLMYLLVYPQKPIVKTKTIELIG 751

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + +L AGQNAT+AVMSYSGYDIEDA++MN+ASLDRGFGRC+V R   C +K+Y N+T DR
Sbjct: 752  YDRLGAGQNATVAVMSYSGYDIEDAIVMNRASLDRGFGRCIVLRKYGCTIKKYSNRTQDR 811

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAI----SMATP 1088
            I+ P   A T  P  RHR LD+DGI A GE+I    V +NK  P  +   +    +M   
Sbjct: 812  IVPP-TPAQT-GPNGRHRLLDKDGIAAVGEKISPGDVYINKQSPGNTRDPLPNPQAMPDS 869

Query: 1089 EYKEVPVSYKG--SVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVI 1146
             Y+    SYKG       ++KV+++++ E  F +K L+R TRRPE+GDKFSSRHGQKGV 
Sbjct: 870  FYRPTAQSYKGPQGESCVVDKVMLTTSDEGQFNVKCLVRHTRRPEVGDKFSSRHGQKGVC 929

Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G IVEQ D+PF+E GICPD+IMNPHG 
Sbjct: 930  GTIVEQSDLPFSERGICPDLIMNPHGF 956



 Score =  262 bits (670), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 122/193 (63%), Positives = 151/193 (78%), Gaps = 2/193 (1%)

Query: 1182 YKEVPVSYKG--SVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1239
            Y+    SYKG       ++KV+++++ E  F +K L+R TRRPE+GDKFSSRHGQKGV G
Sbjct: 871  YRPTAQSYKGPQGESCVVDKVMLTTSDEGQFNVKCLVRHTRRPEVGDKFSSRHGQKGVCG 930

Query: 1240 LIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTK 1299
             IVEQ D+PF+E GICPD+IMNPHG+PSRMTVGK+IELL GKAGL +G +K GTAFGG  
Sbjct: 931  TIVEQSDLPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGLQDGKFKYGTAFGGDT 990

Query: 1300 LVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPR 1359
            +  + E L+ HG++Y GKD+ + GITGE L AYI+ GPVYYQKLKHMV DK+HAR+RGPR
Sbjct: 991  VTSLSEVLVEHGFSYNGKDLMHCGITGEPLVAYIFMGPVYYQKLKHMVLDKMHARARGPR 1050

Query: 1360 VVLTRQPTGRRWK 1372
            VVLTRQPT  R +
Sbjct: 1051 VVLTRQPTEGRAR 1063



 Score =  227 bits (578), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 114/211 (54%), Positives = 154/211 (72%), Gaps = 8/211 (3%)

Query: 127 GLVKP-HIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG-IADKIIPKI-KA 183
            +V P  +D  DY+ N  ++   Q  A ++ D       K L+  +   AD ++ K  +A
Sbjct: 367 AMVDPTQVDDKDYYGNKRLELAGQLLALLFEDC-----FKRLNADLKRQADAVLSKSNRA 421

Query: 184 AQFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
            QFDI+  +RQDT++N L  AI +GNWT++RF+MER+GVTQVLSRLS+IS LGMMTRI S
Sbjct: 422 TQFDIIKCIRQDTLSNGLEHAISSGNWTVKRFRMERKGVTQVLSRLSFISALGMMTRITS 481

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
           QFEKTRKVSGPR+LQ SQWGMLCPSDTPEGE+CGLVKNLALMTH+TT+++E+ +  + + 
Sbjct: 482 QFEKTRKVSGPRALQPSQWGMLCPSDTPEGESCGLVKNLALMTHVTTDDEEEPLRSLAHV 541

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
           +G+E + +  G+EL SPG  LVF+NG + G+
Sbjct: 542 LGVEPLLLLVGQELHSPGSALVFLNGHILGV 572



 Score =  164 bits (416), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 81/132 (61%), Positives = 99/132 (75%), Gaps = 15/132 (11%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKR 751
           F+DFL +G +EYLDVNE N+S+IA+ ES I P  TTHLEI PFTLLGVCAGI        
Sbjct: 643 FNDFLTQGFVEYLDVNEENNSYIALYESEITPE-TTHLEIEPFTLLGVCAGI-------- 693

Query: 752 FHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTI 811
                 +PYPHHNQ+PRNTYQCAMGKQAMG I +NQ NR+DTLMY LVY Q+P+V++KTI
Sbjct: 694 ------IPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLNRMDTLMYLLVYPQKPIVKTKTI 747

Query: 812 RITNFHKLPAGK 823
            +  + +L AG+
Sbjct: 748 ELIGYDRLGAGQ 759



 Score =  111 bits (278), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 48/85 (56%), Positives = 67/85 (78%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           K++ VD+ARD L+   +AH+PV    F+ K +Y+A+MIRR++ A+ DP  +DD+DYYGNK
Sbjct: 324 KRSKVDEARDILAGVVLAHVPVPAYDFRQKCVYVAIMIRRILHAMVDPTQVDDKDYYGNK 383

Query: 509 RLELAGSLLSLMFEDVFKRFNSELK 533
           RLELAG LL+L+FED FKR N++LK
Sbjct: 384 RLELAGQLLALLFEDCFKRLNADLK 408



 Score = 83.6 bits (205), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 42/100 (42%), Positives = 61/100 (61%), Gaps = 17/100 (17%)

Query: 318 SSPGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIE 377
           + P  YL + N           +V KP +EE F    + TP +CRLRD+TY+AP+TVD+E
Sbjct: 85  TDPNFYLKYTN----------IQVGKPSVEEDF-IVEEITPQQCRLRDMTYAAPVTVDVE 133

Query: 378 YTRGSQRVVRSD------LVIGRMPIMLQSSKCVLRNKTE 411
           YTRG + V  +       + IGR+P+ML+SS+C+L  K+E
Sbjct: 134 YTRGKEIVTNTSKNGVGGVTIGRIPLMLRSSRCILTGKSE 173



 Score = 74.7 bits (182), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 35/63 (55%), Positives = 48/63 (76%), Gaps = 2/63 (3%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANAN--IYSDVDPLFYLKYLDI 169
           ++DK++L+ +FLK +GLV+ HIDSF+Y IN EIKK++ A AN  +  D DP FYLKY +I
Sbjct: 37  LKDKFELLPAFLKVRGLVRQHIDSFNYLINEEIKKIIAAKANEKVTCDTDPNFYLKYTNI 96

Query: 170 HVG 172
            VG
Sbjct: 97  QVG 99


>gi|430811324|emb|CCJ31247.1| unnamed protein product [Pneumocystis jirovecii]
          Length = 1167

 Score =  318 bits (814), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 149/267 (55%), Positives = 198/267 (74%), Gaps = 9/267 (3%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I +NQ  RID+L+Y ++Y Q+P+V++KTI +  
Sbjct: 706  GLIPYPHHNQSPRNTYQCAMGKQAIGAIAWNQLLRIDSLLYLMIYPQQPLVKTKTIDLIG 765

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNA IAVMS+SGYDIEDALI+NKAS+DRGFGRC V R     +K+Y N ++DR
Sbjct: 766  YDKLPAGQNAIIAVMSFSGYDIEDALILNKASIDRGFGRCQVIRKYATTIKRYANGSYDR 825

Query: 1033 ILGPLL-EADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTIS-----VSAISMA 1086
            + GP   E D     +++ AL++DG+   GE+I   Q+ +NK +PT +      + I   
Sbjct: 826  LEGPSRNEGDV---AWKYEALEEDGLAGVGEKIESGQIYINKQIPTNANDNTIATRIQQH 882

Query: 1087 TPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVI 1146
               +K  P+ YK   P Y++K+++++   D  LIK L+RQTRRPE+GDKFSSRHGQKGV 
Sbjct: 883  ELSWKASPMIYKSFEPGYIDKIMLTTTDSDQTLIKCLVRQTRRPELGDKFSSRHGQKGVC 942

Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGL 1173
            GLIV+QEDMPF+++GI PDIIMNPHG 
Sbjct: 943  GLIVQQEDMPFDQNGITPDIIMNPHGF 969



 Score =  273 bits (699), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 124/189 (65%), Positives = 157/189 (83%)

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
            +K  P+ YK   P Y++K+++++   D  LIK L+RQTRRPE+GDKFSSRHGQKGV GLI
Sbjct: 886  WKASPMIYKSFEPGYIDKIMLTTTDSDQTLIKCLVRQTRRPELGDKFSSRHGQKGVCGLI 945

Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
            V+QEDMPF+++GI PDIIMNPHG+PSRMTVGK+IELLAGKAG++ G  + GTAFGG+K+ 
Sbjct: 946  VQQEDMPFDQNGITPDIIMNPHGFPSRMTVGKMIELLAGKAGVLSGTLQYGTAFGGSKID 1005

Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
            D+ + LI +GY+Y GKD   SGITGE+L+AYI+ GP+YYQKLKHMV DK+HAR+RGPR +
Sbjct: 1006 DMSQILIENGYSYSGKDELTSGITGESLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAI 1065

Query: 1362 LTRQPTGRR 1370
            LTRQPT  R
Sbjct: 1066 LTRQPTEGR 1074



 Score =  211 bits (537), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 110/208 (52%), Positives = 149/208 (71%), Gaps = 9/208 (4%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQ-FDIVNH 191
           +D  DY  N  ++   Q  + ++ D+   F  + L +++   DK++ K    Q FD  N 
Sbjct: 382 VDDRDYVGNKRLELAGQLLSLLFEDLFKTFN-RNLKLNI---DKVLKKPNRTQEFDAYNQ 437

Query: 192 M--RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
           +    D IT+ +  AI TGNW+++RFKMER GVT VLSRLSYIS LGMMTRI+SQFEKTR
Sbjct: 438 ISIHGDHITSGMIRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKTR 497

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEH- 308
           K+SGPR+LQ SQ+GMLCPSDTPEGE+CGL+KNLALMTHITT+NDE+ + K+ + +G E  
Sbjct: 498 KISGPRALQPSQFGMLCPSDTPEGESCGLIKNLALMTHITTDNDEEPIEKLAFVLGTEEK 557

Query: 309 -IAMFNGEELSSPGVYLVFVNGILAGIT 335
            I++  G EL +PG Y++++NGI+ GIT
Sbjct: 558 DISLITGHELYAPGTYVIYLNGIILGIT 585



 Score =  157 bits (396), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 75/135 (55%), Positives = 96/135 (71%), Gaps = 15/135 (11%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKR 751
           FDDFL  G +EYLDVNE NDS+I++ E+ I    TTHLEI PFT+LG  AG         
Sbjct: 657 FDDFLKRGLVEYLDVNEENDSYISIYENKISES-TTHLEIEPFTILGAVAG--------- 706

Query: 752 FHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTI 811
                L+PYPHHNQ+PRNTYQCAMGKQA+G I +NQ  RID+L+Y ++Y Q+P+V++KTI
Sbjct: 707 -----LIPYPHHNQSPRNTYQCAMGKQAIGAIAWNQLLRIDSLLYLMIYPQQPLVKTKTI 761

Query: 812 RITNFHKLPAGKCQI 826
            +  + KLPAG+  I
Sbjct: 762 DLIGYDKLPAGQNAI 776



 Score =  106 bits (265), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 46/85 (54%), Positives = 66/85 (77%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           ++ P ++A + L++  +AHIPV N+ F+ K +Y A+M RR+++A+ +P M+DDRDY GNK
Sbjct: 332 RRPPSEEALEVLAAIVLAHIPVENLNFRPKIIYFAIMTRRVLMAIKNPKMVDDRDYVGNK 391

Query: 509 RLELAGSLLSLMFEDVFKRFNSELK 533
           RLELAG LLSL+FED+FK FN  LK
Sbjct: 392 RLELAGQLLSLLFEDLFKTFNRNLK 416



 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/55 (74%), Positives = 46/55 (83%)

Query: 357 TPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKTE 411
            PHECRLRDLTYSAPI VDIEYTRG Q V R  + IGR+PIML+S+KC+L NKTE
Sbjct: 125 APHECRLRDLTYSAPIMVDIEYTRGKQVVRRKGVQIGRLPIMLRSNKCILFNKTE 179



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/61 (57%), Positives = 50/61 (81%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           + DKW L+ +FLK KGL+K H DSF+YF++V++KK+++AN  + SDV+P FYLKY+DI V
Sbjct: 50  LEDKWHLLPAFLKVKGLIKQHTDSFNYFVDVDLKKIVKANEKVISDVEPWFYLKYIDIQV 109

Query: 172 G 172
           G
Sbjct: 110 G 110


>gi|339233902|ref|XP_003382068.1| DNA-directed RNA polymerase III subunit RPC2 [Trichinella spiralis]
 gi|316978998|gb|EFV61866.1| DNA-directed RNA polymerase III subunit RPC2 [Trichinella spiralis]
          Length = 1302

 Score =  317 bits (813), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 152/264 (57%), Positives = 192/264 (72%), Gaps = 21/264 (7%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYP+HNQ+PRNTYQCAMGKQAMG I YNQ  R+D+L+Y LVY QRP+V++KTI + N
Sbjct: 827  GLIPYPNHNQSPRNTYQCAMGKQAMGIIAYNQSIRMDSLLYGLVYPQRPLVKTKTIELIN 886

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F  LPAGQNA +AVMSYS                 GFGRC VYR++KC +K Y N   DR
Sbjct: 887  FECLPAGQNAIVAVMSYS-----------------GFGRCHVYRSNKCFVKSYSNMDSDR 929

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISV----SAISMATP 1088
            ILGPL++  T KPV+RH ALD +GIV PG  +   QVLVNK  P  ++        ++  
Sbjct: 930  ILGPLVDVTTGKPVFRHMALDAEGIVKPGNVVKIGQVLVNKVAPRSALLNEEEPTVVSET 989

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
            ++KE P+ + G+  +Y E+VL++SN ++  LIK+LLRQTRRPE+GDKFSSRHGQKGV+GL
Sbjct: 990  DFKEEPLVWTGAAEAYAERVLLTSNLDNQCLIKVLLRQTRRPELGDKFSSRHGQKGVVGL 1049

Query: 1149 IVEQEDMPFNESGICPDIIMNPHG 1172
            IV+QEDMPF+  GI PD+IMNPHG
Sbjct: 1050 IVQQEDMPFSSEGIVPDLIMNPHG 1073



 Score =  233 bits (594), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 112/194 (57%), Positives = 146/194 (75%), Gaps = 2/194 (1%)

Query: 1180 TEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1239
            T++KE P+ + G+  +Y E+VL++SN ++  LIK+LLRQTRRPE+GDKFSSRHGQKGV+G
Sbjct: 989  TDFKEEPLVWTGAAEAYAERVLLTSNLDNQCLIKVLLRQTRRPELGDKFSSRHGQKGVVG 1048

Query: 1240 LIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTK 1299
            LIV+QEDMPF+  GI PD+IMNPHGYPSRMTVGKL+EL+ GK G   G  + GTAF G K
Sbjct: 1049 LIVQQEDMPFSSEGIVPDLIMNPHGYPSRMTVGKLLELINGKGGTFTGTPRYGTAFSGDK 1108

Query: 1300 LVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVY-YQKLKHMVQDKIHARSRGP 1358
            + ++ ++L++HG+NY GKD+  SG+    ++       VY  QKLKHMV DKIHAR +GP
Sbjct: 1109 IEEIAKDLMQHGFNYLGKDVLISGVF-RLIQMQFGCDEVYLLQKLKHMVLDKIHARGKGP 1167

Query: 1359 RVVLTRQPTGRRWK 1372
               LTRQPT  R +
Sbjct: 1168 MENLTRQPTEGRSR 1181



 Score =  211 bits (537), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 107/208 (51%), Positives = 144/208 (69%), Gaps = 4/208 (1%)

Query: 128 LVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFD 187
           L K  +D  DY+ N   K+L  A + +    + LF     +I + + D+ I +++ A FD
Sbjct: 503 LGKATVDDPDYYGN---KRLELAGSLLALLFEDLFKRFNQEISL-LTDRTIQRLRTALFD 558

Query: 188 IVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEK 247
            V H+ +D ITN L  AI TGNW IRR++M+R GVTQ+LSR+SYI+ LGMMTRINSQFE 
Sbjct: 559 FVKHIPKDLITNGLLNAIATGNWVIRRYRMDRHGVTQILSRMSYIAMLGMMTRINSQFEH 618

Query: 248 TRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIE 307
           TRK+ GPRSLQ SQWGMLCP+DTPEGE CGL+K+LAL++HITT+++E  + K   N+G+E
Sbjct: 619 TRKMGGPRSLQPSQWGMLCPADTPEGEPCGLIKSLALLSHITTDSEELPVKKAFCNLGVE 678

Query: 308 HIAMFNGEELSSPGVYLVFVNGILAGIT 335
            +   + E L  P    VF+NG+L GIT
Sbjct: 679 DVNYLSTEVLLHPSTSFVFLNGVLFGIT 706



 Score =  155 bits (393), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 78/139 (56%), Positives = 95/139 (68%), Gaps = 15/139 (10%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G +  +DF  +G IEYLDV+E   + IAV +S I    TTHLEI PFTL GVCAG     
Sbjct: 774 GKRNLEDFFKDGLIEYLDVSEEESALIAVYDSEITEK-TTHLEIEPFTLFGVCAG----- 827

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYP+HNQ+PRNTYQCAMGKQAMG I YNQ  R+D+L+Y LVY QRP+V+
Sbjct: 828 ---------LIPYPNHNQSPRNTYQCAMGKQAMGIIAYNQSIRMDSLLYGLVYPQRPLVK 878

Query: 808 SKTIRITNFHKLPAGKCQI 826
           +KTI + NF  LPAG+  I
Sbjct: 879 TKTIELINFECLPAGQNAI 897



 Score = 94.7 bits (234), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 42/68 (61%), Positives = 53/68 (77%)

Query: 344 PEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSK 403
           P+ EE+       TPHECRLRD+TY+API VDIEYTRG ++V+R +  IGRMPIML+SS+
Sbjct: 237 PKAEEADCLQTSVTPHECRLRDITYAAPIFVDIEYTRGKEKVLRKNFQIGRMPIMLRSSR 296

Query: 404 CVLRNKTE 411
           CVL+ K E
Sbjct: 297 CVLKGKNE 304



 Score = 87.8 bits (216), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 40/77 (51%), Positives = 55/77 (71%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A  FL+    AH+P      K+KA+Y+ +MI+R++  +     +DD DYYGNKRLELAGS
Sbjct: 465 ALSFLTDVICAHVPSSAGNMKLKAIYMGLMIQRIIQVMLGKATVDDPDYYGNKRLELAGS 524

Query: 516 LLSLMFEDVFKRFNSEL 532
           LL+L+FED+FKRFN E+
Sbjct: 525 LLALLFEDLFKRFNQEI 541



 Score = 77.0 bits (188), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 31/62 (50%), Positives = 46/62 (74%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           +  KW ++  +L+ KGL+  HIDSFDYFIN EIK++++AN  +  + DP FY+KY+DI V
Sbjct: 175 LEQKWAIIPHYLRTKGLINQHIDSFDYFINSEIKEIVKANNMVRCNADPSFYIKYIDIRV 234

Query: 172 GI 173
           G+
Sbjct: 235 GL 236


>gi|258571555|ref|XP_002544581.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Uncinocarpus
            reesii 1704]
 gi|237904851|gb|EEP79252.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Uncinocarpus
            reesii 1704]
          Length = 1202

 Score =  317 bits (813), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 148/266 (55%), Positives = 194/266 (72%), Gaps = 7/266 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I  NQ  RID+L+Y +VY Q+PMV+++TI +  
Sbjct: 735  GLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYTMVYPQKPMVKTRTIELVK 794

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + +LPAGQ+AT+AVMSYSGYDIEDAL++NKAS+DRGFGRC V+R     LK Y N T DR
Sbjct: 795  YDRLPAGQSATVAVMSYSGYDIEDALVLNKASVDRGFGRCQVFRKYSANLKSYSNGTKDR 854

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATP---- 1088
            +LGP  + +   P+ +H  LD DG+ A GE++   +V +NK  P  ++S+    +     
Sbjct: 855  LLGP--DRENGAPIRKHALLDSDGLAAVGEKVSSGEVYINKVTPENALSSGITGSDAGGP 912

Query: 1089 -EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
              Y   P +YK   PSY++KV++S+   +  L+K+  RQTRRPE+GDKFSSRHGQKGV+G
Sbjct: 913  IAYIPSPQTYKLPDPSYIDKVMISTTEGENQLLKVQTRQTRRPEVGDKFSSRHGQKGVVG 972

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            +I EQ DMPF + GI PDIIMNPHG 
Sbjct: 973  IIAEQADMPFTDQGIVPDIIMNPHGF 998



 Score =  252 bits (644), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 116/203 (57%), Positives = 153/203 (75%), Gaps = 2/203 (0%)

Query: 1172 GLKGCDR--ITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFS 1229
            G+ G D      Y   P +YK   PSY++KV++S+   +  L+K+  RQTRRPE+GDKFS
Sbjct: 903  GITGSDAGGPIAYIPSPQTYKLPDPSYIDKVMISTTEGENQLLKVQTRQTRRPEVGDKFS 962

Query: 1230 SRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNY 1289
            SRHGQKGV+G+I EQ DMPF + GI PDIIMNPHG+PSRMTVGK++EL+ GKAG++ G +
Sbjct: 963  SRHGQKGVVGIIAEQADMPFTDQGIVPDIIMNPHGFPSRMTVGKMLELVVGKAGVLSGQF 1022

Query: 1290 KEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQD 1349
              GT FGG+ + ++   L+  G++Y GKD   SGITGE L AY+++GP+YYQKLKHMVQD
Sbjct: 1023 GYGTPFGGSPVEEMSAILVSKGFSYGGKDYLTSGITGEPLPAYVFTGPIYYQKLKHMVQD 1082

Query: 1350 KIHARSRGPRVVLTRQPTGRRWK 1372
            K+H+R+RGPR +LTRQPT  R +
Sbjct: 1083 KMHSRARGPRAILTRQPTEGRSR 1105



 Score =  203 bits (517), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 107/206 (51%), Positives = 140/206 (67%), Gaps = 7/206 (3%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPK-IKAAQFDI--V 189
           +D  DY  N  ++   Q  A ++ D   LF     DI + I DK++ K ++   FD   V
Sbjct: 413 VDDRDYVGNKRLELAGQLLALLFED---LFKKFCFDIKMNI-DKVLKKPVRTEAFDAFSV 468

Query: 190 NHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
             +  + IT  +  AI TGNW+++RF+MER GVT VLSRLSYIS LGMMTRI+SQFEKTR
Sbjct: 469 VAIHGNHITQGMNRAISTGNWSLKRFRMERAGVTHVLSRLSYISALGMMTRISSQFEKTR 528

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHI 309
           KVSGPR+LQ SQ+GMLCP+DTPEGEACGLVKNLALMTHITT ++E+ + K++Y +G E +
Sbjct: 529 KVSGPRALQPSQFGMLCPADTPEGEACGLVKNLALMTHITTNDEEEPVRKLVYALGAEDV 588

Query: 310 AMFNGEELSSPGVYLVFVNGILAGIT 335
               G E    G Y++F+NG    +T
Sbjct: 589 QAVGGREFYGQGAYIIFLNGSPIALT 614



 Score =  157 bits (397), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 76/137 (55%), Positives = 95/137 (69%), Gaps = 15/137 (10%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G   FDDFL +G +EYLDVNE NDS+I+V E  I    TTHLEI PFT+LG  AG     
Sbjct: 682 GEMEFDDFLAQGLVEYLDVNEENDSYISVYEREINEN-TTHLEIEPFTILGAVAG----- 735

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQA+G I  NQ  RID+L+Y +VY Q+PMV+
Sbjct: 736 ---------LIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYTMVYPQKPMVK 786

Query: 808 SKTIRITNFHKLPAGKC 824
           ++TI +  + +LPAG+ 
Sbjct: 787 TRTIELVKYDRLPAGQS 803



 Score = 96.3 bits (238), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 43/89 (48%), Positives = 66/89 (74%)

Query: 445 FQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDY 504
           F   ++  + +A + ++S  I+H+ V NM F+ KA+Y+A M RR+++A  DP ++DDRDY
Sbjct: 359 FGGVRRNYIQEAVEAIASVIISHVQVENMNFRPKALYVAHMARRVLMAKHDPSLVDDRDY 418

Query: 505 YGNKRLELAGSLLSLMFEDVFKRFNSELK 533
            GNKRLELAG LL+L+FED+FK+F  ++K
Sbjct: 419 VGNKRLELAGQLLALLFEDLFKKFCFDIK 447



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/147 (38%), Positives = 76/147 (51%), Gaps = 22/147 (14%)

Query: 283 ALMTHITTENDEKNMLKIMYNI-GI--EHIAMFN-------------GEELSS---PGVY 323
           +L   I TE D+ N+L     + G+  +HI  +N               E+ S   P  Y
Sbjct: 65  SLTDPINTEKDKWNLLPAFLKVKGLVKQHIDSYNYFVEVQLKKIVQASAEIRSDVDPNFY 124

Query: 324 LVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQ 383
           + F +  L       +E  +   +  F      TP+ECRLRD+TY+API VD EY RG Q
Sbjct: 125 IRFHDIYLGSPRRADEEQSE---DTRFKVESTITPNECRLRDMTYAAPILVDFEYVRGRQ 181

Query: 384 RVVRSDLVIGRMPIMLQSSKCVLRNKT 410
           RV R+   IGRMP+ML+SSKCVL  K+
Sbjct: 182 RVKRNGTAIGRMPVMLRSSKCVLSKKS 208



 Score = 84.3 bits (207), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 35/60 (58%), Positives = 51/60 (85%)

Query: 113 RDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           +DKW L+ +FLK KGLVK HIDS++YF+ V++KK++QA+A I SDVDP FY+++ DI++G
Sbjct: 74  KDKWNLLPAFLKVKGLVKQHIDSYNYFVEVQLKKIVQASAEIRSDVDPNFYIRFHDIYLG 133


>gi|255950612|ref|XP_002566073.1| Pc22g21780 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211593090|emb|CAP99466.1| Pc22g21780 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1208

 Score =  317 bits (812), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 148/265 (55%), Positives = 191/265 (72%), Gaps = 6/265 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I  NQ  RID+++Y +VY Q+PMV+S+TI +T 
Sbjct: 742  GLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFQRIDSILYLMVYPQKPMVKSRTIELTK 801

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + +LPAGQNAT+AVMSYSGYDIEDAL++NK S+DRGFGRC V+R     LK YPN   D 
Sbjct: 802  YDQLPAGQNATVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYVTTLKSYPNGAKDS 861

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMP----TISVSAISMATP 1088
            +  P  E     P+ +H  L+ DG+ A GE +   +  +NK  P    ++  S   +   
Sbjct: 862  LRAPTFENGA--PIRKHALLESDGLAAVGEMVNNGETYINKVTPRVQNSLGFSGPDIGGG 919

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
            +  E P++YK   PSY++KVLVS+   +  LIK+L RQTRRPE+GDKFSSRHGQKGV+G+
Sbjct: 920  DVLEAPMNYKLPDPSYIDKVLVSATEGETQLIKVLTRQTRRPEVGDKFSSRHGQKGVVGI 979

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            I +Q DMPF++ GI PDIIMNPHG 
Sbjct: 980  IADQADMPFSDQGINPDIIMNPHGF 1004



 Score =  253 bits (647), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 115/189 (60%), Positives = 151/189 (79%)

Query: 1184 EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVE 1243
            E P++YK   PSY++KVLVS+   +  LIK+L RQTRRPE+GDKFSSRHGQKGV+G+I +
Sbjct: 923  EAPMNYKLPDPSYIDKVLVSATEGETQLIKVLTRQTRRPEVGDKFSSRHGQKGVVGIIAD 982

Query: 1244 QEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDV 1303
            Q DMPF++ GI PDIIMNPHG+PSRMTVGK++EL+AGKAG++ G +  GT FGG+ + ++
Sbjct: 983  QADMPFSDQGINPDIIMNPHGFPSRMTVGKMLELVAGKAGVLSGQHGYGTCFGGSPVQEM 1042

Query: 1304 QEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLT 1363
             + LI  G++Y GKD   SGITGE L  Y+++GP+YYQKLKHMVQDK+H+R++GP   LT
Sbjct: 1043 SQILIDKGFSYGGKDYLTSGITGEPLPFYVFTGPIYYQKLKHMVQDKMHSRAKGPTATLT 1102

Query: 1364 RQPTGRRWK 1372
            RQPT  R +
Sbjct: 1103 RQPTEGRSR 1111



 Score =  204 bits (518), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 104/205 (50%), Positives = 140/205 (68%), Gaps = 5/205 (2%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFD--IVN 190
           +D  DY  N  ++   Q  A ++ D   LF     DI + I   +  + +A QFD   + 
Sbjct: 420 VDDRDYLGNKRLELAGQMLALLFED---LFKKFCFDIKMNIDKVLNKRNRAEQFDAWTIV 476

Query: 191 HMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRK 250
            M  + IT  +  AI TGNW+++RF+MER GVT VLSRLSYI+ LGMMTRI+SQFEKTRK
Sbjct: 477 TMHGNHITQGMNRAISTGNWSLKRFRMERAGVTHVLSRLSYIAALGMMTRISSQFEKTRK 536

Query: 251 VSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIA 310
           VSGPR+LQ SQ+GMLCP+DTPEGEACGLVKNLALMTHITT ++E  +  +++ +G+E I+
Sbjct: 537 VSGPRALQPSQFGMLCPADTPEGEACGLVKNLALMTHITTNDEEGPVRNLIFMLGVEDIS 596

Query: 311 MFNGEELSSPGVYLVFVNGILAGIT 335
              G++L + G Y + +NG   G+T
Sbjct: 597 SVGGQQLYARGAYTISINGTPTGLT 621



 Score =  157 bits (396), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 76/136 (55%), Positives = 95/136 (69%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G   FDDFL +G +EYLDVNE NDS+IA+ E  I     THLEI PFT+LG  AG     
Sbjct: 689 GKMEFDDFLAQGLVEYLDVNEENDSYIAIYEKDIT-NTHTHLEIEPFTVLGAVAG----- 742

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQA+G I  NQ  RID+++Y +VY Q+PMV+
Sbjct: 743 ---------LIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFQRIDSILYLMVYPQKPMVK 793

Query: 808 SKTIRITNFHKLPAGK 823
           S+TI +T + +LPAG+
Sbjct: 794 SRTIELTKYDQLPAGQ 809



 Score =  106 bits (265), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 55/135 (40%), Positives = 85/135 (62%), Gaps = 7/135 (5%)

Query: 429 QRTSPLLSCKKLRQKRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRR 488
           Q+    + C+    ++   Y+KT V +A + ++S  I+HI V +M F+ KA+Y+A M RR
Sbjct: 350 QQALDWIGCRIKINRKQAAYRKTHVQEAVEAIASVIISHIEVKDMNFRPKAIYVAHMARR 409

Query: 489 MVLALSDPDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELKETNLSGVVN------ 542
           +++A SDP ++DDRDY GNKRLELAG +L+L+FED+FK+F  ++K  N+  V+N      
Sbjct: 410 VLMAKSDPALVDDRDYLGNKRLELAGQMLALLFEDLFKKFCFDIK-MNIDKVLNKRNRAE 468

Query: 543 LVSGWWFELKYGNKI 557
               W     +GN I
Sbjct: 469 QFDAWTIVTMHGNHI 483



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/61 (62%), Positives = 46/61 (75%)

Query: 350 FNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNK 409
            ++    TP ECRLRD TY+API VD EY RG QRV+R  + IGR+P+ML+SSKCVL NK
Sbjct: 158 LDFESTITPQECRLRDTTYAAPILVDFEYVRGRQRVIRRAVPIGRIPMMLRSSKCVLSNK 217

Query: 410 T 410
           T
Sbjct: 218 T 218



 Score = 78.2 bits (191), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 33/60 (55%), Positives = 49/60 (81%)

Query: 113 RDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           RDKW L+ +FLK KGLVK HIDS++YF+ V++KK++++++ I SDVD  FY+K+ DI+V 
Sbjct: 86  RDKWNLLPAFLKVKGLVKQHIDSYNYFVEVQMKKIVESSSTIRSDVDHNFYIKFTDIYVA 145


>gi|391870940|gb|EIT80109.1| RNA polymerase III, second largest subunit [Aspergillus oryzae 3.042]
          Length = 1008

 Score =  317 bits (812), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 150/266 (56%), Positives = 196/266 (73%), Gaps = 7/266 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I  NQ  RID+++Y +VY Q+PMV+S+TI +T 
Sbjct: 541  GLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVYPQKPMVKSRTIELTK 600

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + +LPAG NA +AVMSYSGYDIEDAL++NK S+DRGFGRC V++ S   LK Y N T D 
Sbjct: 601  YDQLPAGHNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFKKSVANLKSYSNGTKDI 660

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSA----ISMATP 1088
            ++ P  E D   P+ +H  L+ DG+ A GEQ+   +V +NKS P  S+++      M  P
Sbjct: 661  LMPP--EYDNDAPIRKHALLESDGLAAVGEQVNAGEVYINKSTPDQSLASGFPGSDMGRP 718

Query: 1089 -EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
             +Y   P++YK   P+Y+++VLVS+   +  LIK+L RQTRRPE+GDKFSSRHGQKGV+G
Sbjct: 719  VKYTPTPMTYKLHDPAYIDQVLVSTTENENQLIKVLTRQTRRPEVGDKFSSRHGQKGVVG 778

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            +I +Q DMPF + GI PDIIMNPHG 
Sbjct: 779  IIADQADMPFTDQGINPDIIMNPHGF 804



 Score =  261 bits (666), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 120/203 (59%), Positives = 158/203 (77%), Gaps = 2/203 (0%)

Query: 1172 GLKGCD--RITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFS 1229
            G  G D  R  +Y   P++YK   P+Y+++VLVS+   +  LIK+L RQTRRPE+GDKFS
Sbjct: 709  GFPGSDMGRPVKYTPTPMTYKLHDPAYIDQVLVSTTENENQLIKVLTRQTRRPEVGDKFS 768

Query: 1230 SRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNY 1289
            SRHGQKGV+G+I +Q DMPF + GI PDIIMNPHG+PSRMTVGK++EL+AGKAG++ G +
Sbjct: 769  SRHGQKGVVGIIADQADMPFTDQGINPDIIMNPHGFPSRMTVGKMLELVAGKAGVLAGQH 828

Query: 1290 KEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQD 1349
              GT FGG+ + ++ + LI  G++Y GKD   SGITGEAL  Y+++GP+YYQKLKHMVQD
Sbjct: 829  GYGTCFGGSPVEEMSQILIDKGFSYGGKDYLTSGITGEALPFYVFTGPIYYQKLKHMVQD 888

Query: 1350 KIHARSRGPRVVLTRQPTGRRWK 1372
            K+H+R+RGPR +LTRQPT  R +
Sbjct: 889  KMHSRARGPRAILTRQPTEGRSR 911



 Score =  198 bits (503), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 103/205 (50%), Positives = 136/205 (66%), Gaps = 5/205 (2%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFD--IVN 190
           +D  DY  N  ++   Q  A ++ D   LF     DI + +   +  + +A  FD   V 
Sbjct: 219 VDDRDYLGNKRLELAGQLLALLFED---LFKKFCFDIKMNVDKVLNKRNRAEAFDAWTVM 275

Query: 191 HMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRK 250
            M  + IT  +  AI TGNW+++RF+MER GVT VLSRLSYI+ LGMMTRI+SQFEKTRK
Sbjct: 276 SMHSNHITQGMNRAISTGNWSLKRFRMERAGVTHVLSRLSYIAALGMMTRISSQFEKTRK 335

Query: 251 VSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIA 310
           VSGPR+LQ SQ+GMLC +DTPEGEACGLVKNLALMTHITT ++E  +  +++ +G E I+
Sbjct: 336 VSGPRALQPSQFGMLCLADTPEGEACGLVKNLALMTHITTNDEEGPIRNLIFMLGAEDIS 395

Query: 311 MFNGEELSSPGVYLVFVNGILAGIT 335
              G+EL  PG Y + +NG    +T
Sbjct: 396 TLGGKELYGPGCYTISINGTPMALT 420



 Score =  156 bits (395), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 77/135 (57%), Positives = 94/135 (69%), Gaps = 15/135 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G   FDDFL +G +EYLDVNE NDS IA+ E  I    TTHLEI PFT+LG  AG     
Sbjct: 488 GTMSFDDFLAQGLVEYLDVNEENDSLIAIYEKDITEA-TTHLEIEPFTVLGAVAG----- 541

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQA+G I  NQ  RID+++Y +VY Q+PMV+
Sbjct: 542 ---------LIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVYPQKPMVK 592

Query: 808 SKTIRITNFHKLPAG 822
           S+TI +T + +LPAG
Sbjct: 593 SRTIELTKYDQLPAG 607



 Score =  102 bits (255), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 49/104 (47%), Positives = 77/104 (74%), Gaps = 1/104 (0%)

Query: 439 KLRQKRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDM 498
           K+ + +   Y++T V +A + ++S  I+HI V +M F+ KA+Y+A M RR+++A +DP +
Sbjct: 159 KINRGKQNNYRRTHVQEAVEAIASVIISHIEVKDMNFRPKAVYVAHMARRVLMAKNDPSL 218

Query: 499 LDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELKETNLSGVVN 542
           +DDRDY GNKRLELAG LL+L+FED+FK+F  ++K  N+  V+N
Sbjct: 219 VDDRDYLGNKRLELAGQLLALLFEDLFKKFCFDIK-MNVDKVLN 261


>gi|317139935|ref|XP_001817863.2| DNA-directed RNA polymerase III subunit RET1 [Aspergillus oryzae
            RIB40]
          Length = 1218

 Score =  317 bits (812), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 150/266 (56%), Positives = 196/266 (73%), Gaps = 7/266 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I  NQ  RID+++Y +VY Q+PMV+S+TI +T 
Sbjct: 751  GLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVYPQKPMVKSRTIELTK 810

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + +LPAG NA +AVMSYSGYDIEDAL++NK S+DRGFGRC V++ S   LK Y N T D 
Sbjct: 811  YDQLPAGHNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFKKSVANLKSYSNGTKDI 870

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSA----ISMATP 1088
            ++ P  E D   P+ +H  L+ DG+ A GEQ+   +V +NKS P  S+++      M  P
Sbjct: 871  LMPP--EYDNDAPIRKHALLESDGLAAVGEQVNAGEVYINKSTPDQSLASGFPGSDMGRP 928

Query: 1089 -EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
             +Y   P++YK   P+Y+++VLVS+   +  LIK+L RQTRRPE+GDKFSSRHGQKGV+G
Sbjct: 929  VKYTPTPMTYKLHDPAYIDQVLVSTTENENQLIKVLTRQTRRPEVGDKFSSRHGQKGVVG 988

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            +I +Q DMPF + GI PDIIMNPHG 
Sbjct: 989  IIADQADMPFTDQGINPDIIMNPHGF 1014



 Score =  261 bits (668), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 120/203 (59%), Positives = 158/203 (77%), Gaps = 2/203 (0%)

Query: 1172 GLKGCD--RITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFS 1229
            G  G D  R  +Y   P++YK   P+Y+++VLVS+   +  LIK+L RQTRRPE+GDKFS
Sbjct: 919  GFPGSDMGRPVKYTPTPMTYKLHDPAYIDQVLVSTTENENQLIKVLTRQTRRPEVGDKFS 978

Query: 1230 SRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNY 1289
            SRHGQKGV+G+I +Q DMPF + GI PDIIMNPHG+PSRMTVGK++EL+AGKAG++ G +
Sbjct: 979  SRHGQKGVVGIIADQADMPFTDQGINPDIIMNPHGFPSRMTVGKMLELVAGKAGVLAGQH 1038

Query: 1290 KEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQD 1349
              GT FGG+ + ++ + LI  G++Y GKD   SGITGEAL  Y+++GP+YYQKLKHMVQD
Sbjct: 1039 GYGTCFGGSPVEEMSQILIDKGFSYGGKDYLTSGITGEALPFYVFTGPIYYQKLKHMVQD 1098

Query: 1350 KIHARSRGPRVVLTRQPTGRRWK 1372
            K+H+R+RGPR +LTRQPT  R +
Sbjct: 1099 KMHSRARGPRAILTRQPTEGRSR 1121



 Score =  199 bits (506), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 103/205 (50%), Positives = 136/205 (66%), Gaps = 5/205 (2%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFD--IVN 190
           +D  DY  N  ++   Q  A ++ D   LF     DI + +   +  + +A  FD   V 
Sbjct: 429 VDDRDYLGNKRLELAGQLLALLFED---LFKKFCFDIKMNVDKVLNKRNRAEAFDAWTVM 485

Query: 191 HMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRK 250
            M  + IT  +  AI TGNW+++RF+MER GVT VLSRLSYI+ LGMMTRI+SQFEKTRK
Sbjct: 486 SMHSNHITQGMNRAISTGNWSLKRFRMERAGVTHVLSRLSYIAALGMMTRISSQFEKTRK 545

Query: 251 VSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIA 310
           VSGPR+LQ SQ+GMLC +DTPEGEACGLVKNLALMTHITT ++E  +  +++ +G E I+
Sbjct: 546 VSGPRALQPSQFGMLCLADTPEGEACGLVKNLALMTHITTNDEEGPIRNLIFMLGAEDIS 605

Query: 311 MFNGEELSSPGVYLVFVNGILAGIT 335
              G+EL  PG Y + +NG    +T
Sbjct: 606 TLGGKELYGPGCYTISINGTPMALT 630



 Score =  156 bits (395), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 77/135 (57%), Positives = 94/135 (69%), Gaps = 15/135 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G   FDDFL +G +EYLDVNE NDS IA+ E  I    TTHLEI PFT+LG  AG     
Sbjct: 698 GTMSFDDFLAQGLVEYLDVNEENDSLIAIYEKDITEA-TTHLEIEPFTVLGAVAG----- 751

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQA+G I  NQ  RID+++Y +VY Q+PMV+
Sbjct: 752 ---------LIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVYPQKPMVK 802

Query: 808 SKTIRITNFHKLPAG 822
           S+TI +T + +LPAG
Sbjct: 803 SRTIELTKYDQLPAG 817



 Score =  103 bits (256), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 49/104 (47%), Positives = 77/104 (74%), Gaps = 1/104 (0%)

Query: 439 KLRQKRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDM 498
           K+ + +   Y++T V +A + ++S  I+HI V +M F+ KA+Y+A M RR+++A +DP +
Sbjct: 369 KINRGKQNNYRRTHVQEAVEAIASVIISHIEVKDMNFRPKAVYVAHMARRVLMAKNDPSL 428

Query: 499 LDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELKETNLSGVVN 542
           +DDRDY GNKRLELAG LL+L+FED+FK+F  ++K  N+  V+N
Sbjct: 429 VDDRDYLGNKRLELAGQLLALLFEDLFKKFCFDIK-MNVDKVLN 471



 Score = 84.3 bits (207), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 37/54 (68%), Positives = 44/54 (81%)

Query: 357 TPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
           +PHECRLRD TY+API VD EY RG QRV ++   IGRMP+ML+SSKCVL +KT
Sbjct: 173 SPHECRLRDTTYAAPIQVDFEYIRGRQRVKKTGCSIGRMPVMLRSSKCVLSDKT 226



 Score = 73.9 bits (180), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 49/60 (81%)

Query: 113 RDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           +DKW L+ +FLK KGLVK HIDS++Y + V++KK++++++ I SD+D  FY+K+ DI++G
Sbjct: 93  KDKWNLLPAFLKVKGLVKQHIDSYNYLVEVQLKKIVESSSIIRSDIDHNFYIKFTDIYLG 152


>gi|302790720|ref|XP_002977127.1| hypothetical protein SELMODRAFT_443461 [Selaginella moellendorffii]
 gi|300155103|gb|EFJ21736.1| hypothetical protein SELMODRAFT_443461 [Selaginella moellendorffii]
          Length = 1386

 Score =  317 bits (811), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 148/267 (55%), Positives = 194/267 (72%), Gaps = 11/267 (4%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG I YNQ  RIDTL+Y LVY QRP++ +K+I + N
Sbjct: 917  GLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLQRIDTLLYLLVYPQRPLLTTKSIELVN 976

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KL AGQNA++AVMSYSGYDIEDA++MNKASLDRGFGRC+V +   C++++Y N+T DR
Sbjct: 977  YDKLGAGQNASVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVLKKFSCLVRKYENRTMDR 1036

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMP----TISVSAISMATP 1088
            I+ P         +     LDQDGI + GE+I ++ + VNK  P    T  ++ +++   
Sbjct: 1037 IVAPRQHGHATSQL-----LDQDGIASVGERIYDKDIFVNKESPKDVKTTFLNPLALPDS 1091

Query: 1089 EYKEVPVSYKGSV--PSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVI 1146
             Y+  P  YKG +   + ++KVL+++N     +IK  +R TRRPE+GDKFSSRHGQKGV 
Sbjct: 1092 AYRPTPQRYKGPLGESAIVDKVLLTTNESQQMVIKCQVRHTRRPELGDKFSSRHGQKGVC 1151

Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G IVEQ+D PF E G+CPD+IMNPHG 
Sbjct: 1152 GTIVEQQDFPFTERGVCPDLIMNPHGF 1178



 Score =  249 bits (636), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 117/200 (58%), Positives = 149/200 (74%), Gaps = 7/200 (3%)

Query: 1180 TEYKEVPVSYKGSV--PSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV 1237
            + Y+  P  YKG +   + ++KVL+++N     +IK  +R TRRPE+GDKFSSRHGQKGV
Sbjct: 1091 SAYRPTPQRYKGPLGESAIVDKVLLTTNESQQMVIKCQVRHTRRPELGDKFSSRHGQKGV 1150

Query: 1238 IGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFG- 1296
             G IVEQ+D PF E G+CPD+IMNPHG+PSRMTVGK+IELL GKAG+  G Y  G+AFG 
Sbjct: 1151 CGTIVEQQDFPFTERGVCPDLIMNPHGFPSRMTVGKMIELLGGKAGVQSGKYHYGSAFGE 1210

Query: 1297 ----GTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIH 1352
                   +  +   L++HG++Y GKD+ YSGITG  L+AYIY GP+YYQKLKHMV DK+H
Sbjct: 1211 PSGHADTVEAISATLVKHGFSYCGKDLIYSGITGCPLQAYIYMGPIYYQKLKHMVLDKMH 1270

Query: 1353 ARSRGPRVVLTRQPTGRRWK 1372
            AR++GPRVVLTRQPT  R +
Sbjct: 1271 ARAQGPRVVLTRQPTEGRSR 1290



 Score =  183 bits (465), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 95/218 (43%), Positives = 139/218 (63%), Gaps = 16/218 (7%)

Query: 118 LVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKI 177
           L+L  + E  L K  +D  DY  N  ++   Q  A ++ D   LF     ++   + D+ 
Sbjct: 593 LMLRRMLEAILDKECVDDRDYVGNKRLELAGQLLALLFED---LFKRSCSELKSNV-DRT 648

Query: 178 IPKI-KAAQFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLG 236
           + K+ +A+Q+D+   ++ D +T+ L  AI +GNWT++RF+M+++GVTQV+SRLSYI+ LG
Sbjct: 649 LSKMNRASQYDVSKSLKPDMLTSGLENAISSGNWTVKRFRMDKKGVTQVVSRLSYIAALG 708

Query: 237 MMTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKN 296
            MTR+ SQFEK+RK           WGMLCP DTPEGE CGL KNLALMTHITT+++E  
Sbjct: 709 HMTRVASQFEKSRK-----------WGMLCPCDTPEGEGCGLTKNLALMTHITTDDEEAP 757

Query: 297 MLKIMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
           ++ +  N+G+E I + +GEE  S   +LV  NG + GI
Sbjct: 758 LIDLCTNLGVEDINLLSGEEFHSKNAFLVMFNGTILGI 795



 Score =  164 bits (416), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 80/136 (58%), Positives = 97/136 (71%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           GF+ FDDFL EG +EYLDVNE N++ IA+ E       TTH+EI PFT+LGVCAG     
Sbjct: 864 GFRTFDDFLREGLVEYLDVNEENNALIALYEKEA-DSTTTHIEIEPFTILGVCAG----- 917

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQAMG I YNQ  RIDTL+Y LVY QRP++ 
Sbjct: 918 ---------LIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLQRIDTLLYLLVYPQRPLLT 968

Query: 808 SKTIRITNFHKLPAGK 823
           +K+I + N+ KL AG+
Sbjct: 969 TKSIELVNYDKLGAGQ 984



 Score = 99.0 bits (245), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/84 (55%), Positives = 64/84 (76%)

Query: 450 KTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKR 509
           K+ VD+ARD L +  +AH+ V    F+ K +Y+A+M+RRM+ A+ D + +DDRDY GNKR
Sbjct: 559 KSKVDEARDILLNVFLAHVAVHRYDFRPKCIYVALMLRRMLEAILDKECVDDRDYVGNKR 618

Query: 510 LELAGSLLSLMFEDVFKRFNSELK 533
           LELAG LL+L+FED+FKR  SELK
Sbjct: 619 LELAGQLLALLFEDLFKRSCSELK 642



 Score = 80.9 bits (198), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 42/78 (53%), Positives = 54/78 (69%), Gaps = 9/78 (11%)

Query: 341 VCKPEIEESFNYTRQ-TTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSD------LVIG 393
           V  P IE+  +Y RQ  TP +CRLRD+TYSAPI+VDIEYTRG   + R         VIG
Sbjct: 333 VGTPSIEQ--DYIRQDITPQQCRLRDMTYSAPISVDIEYTRGKDIITRKGKDGQGAQVIG 390

Query: 394 RMPIMLQSSKCVLRNKTE 411
           RMP+ML+SS+C+L  K++
Sbjct: 391 RMPVMLRSSRCILTGKSD 408



 Score = 67.8 bits (164), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 43/55 (78%), Gaps = 2/55 (3%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANAN--IYSDVDPLFYLKY 166
           DK++L+ +F K +GLVK H+DS++YF+N EIKK++ A  N  I SDVDP FY+KY
Sbjct: 259 DKFQLLPAFHKVRGLVKQHLDSYNYFVNCEIKKIIHAKGNEKITSDVDPNFYIKY 313


>gi|7022389|dbj|BAA91581.1| unnamed protein product [Homo sapiens]
          Length = 343

 Score =  317 bits (811), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 149/190 (78%), Positives = 170/190 (89%)

Query: 1181 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1240
            +YK+VP++YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GL
Sbjct: 60   QYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGL 119

Query: 1241 IVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKL 1300
            IV QEDMPF +SGICPDIIMNPHG+PSRMTVGKLIELLAGKAG+++G +  GTAFGG+K+
Sbjct: 120  IVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSKV 179

Query: 1301 VDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRV 1360
             DV E+L+RHGYNY GKD   SGITGE LEAYIY GPVYYQKLKHMV DK+HAR+RGPR 
Sbjct: 180  KDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRA 239

Query: 1361 VLTRQPTGRR 1370
            VLTRQPT  R
Sbjct: 240  VLTRQPTEGR 249



 Score =  213 bits (541), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 98/144 (68%), Positives = 121/144 (84%), Gaps = 4/144 (2%)

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT----PE 1089
            +GP+L+A TRKP++RH  LD DGI +PGE++  +QVLVNKSMPT++   +  +     P+
Sbjct: 1    MGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQPQ 60

Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
            YK+VP++YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GLI
Sbjct: 61   YKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLI 120

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
            V QEDMPF +SGICPDIIMNPHG 
Sbjct: 121  VPQEDMPFCDSGICPDIIMNPHGF 144


>gi|83765718|dbj|BAE55861.1| unnamed protein product [Aspergillus oryzae RIB40]
          Length = 1180

 Score =  317 bits (811), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 150/266 (56%), Positives = 196/266 (73%), Gaps = 7/266 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I  NQ  RID+++Y +VY Q+PMV+S+TI +T 
Sbjct: 713  GLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVYPQKPMVKSRTIELTK 772

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + +LPAG NA +AVMSYSGYDIEDAL++NK S+DRGFGRC V++ S   LK Y N T D 
Sbjct: 773  YDQLPAGHNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFKKSVANLKSYSNGTKDI 832

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSA----ISMATP 1088
            ++ P  E D   P+ +H  L+ DG+ A GEQ+   +V +NKS P  S+++      M  P
Sbjct: 833  LMPP--EYDNDAPIRKHALLESDGLAAVGEQVNAGEVYINKSTPDQSLASGFPGSDMGRP 890

Query: 1089 -EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
             +Y   P++YK   P+Y+++VLVS+   +  LIK+L RQTRRPE+GDKFSSRHGQKGV+G
Sbjct: 891  VKYTPTPMTYKLHDPAYIDQVLVSTTENENQLIKVLTRQTRRPEVGDKFSSRHGQKGVVG 950

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            +I +Q DMPF + GI PDIIMNPHG 
Sbjct: 951  IIADQADMPFTDQGINPDIIMNPHGF 976



 Score =  261 bits (667), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 120/203 (59%), Positives = 158/203 (77%), Gaps = 2/203 (0%)

Query: 1172 GLKGCD--RITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFS 1229
            G  G D  R  +Y   P++YK   P+Y+++VLVS+   +  LIK+L RQTRRPE+GDKFS
Sbjct: 881  GFPGSDMGRPVKYTPTPMTYKLHDPAYIDQVLVSTTENENQLIKVLTRQTRRPEVGDKFS 940

Query: 1230 SRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNY 1289
            SRHGQKGV+G+I +Q DMPF + GI PDIIMNPHG+PSRMTVGK++EL+AGKAG++ G +
Sbjct: 941  SRHGQKGVVGIIADQADMPFTDQGINPDIIMNPHGFPSRMTVGKMLELVAGKAGVLAGQH 1000

Query: 1290 KEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQD 1349
              GT FGG+ + ++ + LI  G++Y GKD   SGITGEAL  Y+++GP+YYQKLKHMVQD
Sbjct: 1001 GYGTCFGGSPVEEMSQILIDKGFSYGGKDYLTSGITGEALPFYVFTGPIYYQKLKHMVQD 1060

Query: 1350 KIHARSRGPRVVLTRQPTGRRWK 1372
            K+H+R+RGPR +LTRQPT  R +
Sbjct: 1061 KMHSRARGPRAILTRQPTEGRSR 1083



 Score =  198 bits (504), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 103/205 (50%), Positives = 136/205 (66%), Gaps = 5/205 (2%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFD--IVN 190
           +D  DY  N  ++   Q  A ++ D   LF     DI + +   +  + +A  FD   V 
Sbjct: 391 VDDRDYLGNKRLELAGQLLALLFED---LFKKFCFDIKMNVDKVLNKRNRAEAFDAWTVM 447

Query: 191 HMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRK 250
            M  + IT  +  AI TGNW+++RF+MER GVT VLSRLSYI+ LGMMTRI+SQFEKTRK
Sbjct: 448 SMHSNHITQGMNRAISTGNWSLKRFRMERAGVTHVLSRLSYIAALGMMTRISSQFEKTRK 507

Query: 251 VSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIA 310
           VSGPR+LQ SQ+GMLC +DTPEGEACGLVKNLALMTHITT ++E  +  +++ +G E I+
Sbjct: 508 VSGPRALQPSQFGMLCLADTPEGEACGLVKNLALMTHITTNDEEGPIRNLIFMLGAEDIS 567

Query: 311 MFNGEELSSPGVYLVFVNGILAGIT 335
              G+EL  PG Y + +NG    +T
Sbjct: 568 TLGGKELYGPGCYTISINGTPMALT 592



 Score =  156 bits (394), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 77/135 (57%), Positives = 94/135 (69%), Gaps = 15/135 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G   FDDFL +G +EYLDVNE NDS IA+ E  I    TTHLEI PFT+LG  AG     
Sbjct: 660 GTMSFDDFLAQGLVEYLDVNEENDSLIAIYEKDITEA-TTHLEIEPFTVLGAVAG----- 713

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQA+G I  NQ  RID+++Y +VY Q+PMV+
Sbjct: 714 ---------LIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVYPQKPMVK 764

Query: 808 SKTIRITNFHKLPAG 822
           S+TI +T + +LPAG
Sbjct: 765 SRTIELTKYDQLPAG 779



 Score =  102 bits (255), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 49/104 (47%), Positives = 77/104 (74%), Gaps = 1/104 (0%)

Query: 439 KLRQKRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDM 498
           K+ + +   Y++T V +A + ++S  I+HI V +M F+ KA+Y+A M RR+++A +DP +
Sbjct: 331 KINRGKQNNYRRTHVQEAVEAIASVIISHIEVKDMNFRPKAVYVAHMARRVLMAKNDPSL 390

Query: 499 LDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELKETNLSGVVN 542
           +DDRDY GNKRLELAG LL+L+FED+FK+F  ++K  N+  V+N
Sbjct: 391 VDDRDYLGNKRLELAGQLLALLFEDLFKKFCFDIK-MNVDKVLN 433



 Score = 84.3 bits (207), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 37/55 (67%), Positives = 44/55 (80%)

Query: 356 TTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
            +PHECRLRD TY+API VD EY RG QRV ++   IGRMP+ML+SSKCVL +KT
Sbjct: 134 VSPHECRLRDTTYAAPIQVDFEYIRGRQRVKKTGCSIGRMPVMLRSSKCVLSDKT 188



 Score = 73.6 bits (179), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 49/60 (81%)

Query: 113 RDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           +DKW L+ +FLK KGLVK HIDS++Y + V++KK++++++ I SD+D  FY+K+ DI++G
Sbjct: 55  KDKWNLLPAFLKVKGLVKQHIDSYNYLVEVQLKKIVESSSIIRSDIDHNFYIKFTDIYLG 114


>gi|347835281|emb|CCD49853.1| similar to DNA-directed rna polymerase III subunit [Botryotinia
            fuckeliana]
          Length = 1213

 Score =  317 bits (811), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 149/265 (56%), Positives = 198/265 (74%), Gaps = 6/265 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ +RIDTL+Y +VY Q+PMV+++TI +  
Sbjct: 745  GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFSRIDTLLYLMVYPQQPMVKTRTIELIK 804

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+AVMS+SGYDIEDAL++NKAS DRGFGRC V+R     LK+YPN++ DR
Sbjct: 805  YDKLPAGQNATVAVMSFSGYDIEDALVLNKASCDRGFGRCQVFRKYSTQLKKYPNRSQDR 864

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATP---- 1088
            I   ++  +  KP+ +HR L  DGI   GE+I   +V +NK  P+ + ++  M       
Sbjct: 865  IADRVI-GENGKPIAKHRILGTDGIALVGERINAGEVYLNKESPS-NPNSTGMGNDFNLN 922

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
            + K  P+ YK    +Y++KV++S    ++ ++K+  RQTRRPE+GDKFSSRHGQKGV+G+
Sbjct: 923  DMKPAPMGYKLHDHAYIDKVMLSQTENESGVLKVQTRQTRRPELGDKFSSRHGQKGVVGI 982

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            IV QEDMPF +SG+ PDIIMNPHG 
Sbjct: 983  IVNQEDMPFADSGVTPDIIMNPHGF 1007



 Score =  254 bits (648), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 116/204 (56%), Positives = 158/204 (77%)

Query: 1169 NPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKF 1228
            N  G+     + + K  P+ YK    +Y++KV++S    ++ ++K+  RQTRRPE+GDKF
Sbjct: 911  NSTGMGNDFNLNDMKPAPMGYKLHDHAYIDKVMLSQTENESGVLKVQTRQTRRPELGDKF 970

Query: 1229 SSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGN 1288
            SSRHGQKGV+G+IV QEDMPF +SG+ PDIIMNPHG+PSRMTVGK++ELL+GKAG++ G+
Sbjct: 971  SSRHGQKGVVGIIVNQEDMPFADSGVTPDIIMNPHGFPSRMTVGKMLELLSGKAGVINGS 1030

Query: 1289 YKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQ 1348
             + GT FGG+ +  + + LI +G++Y GKD   SGITGE+L AY++ GP+YYQKLKHMVQ
Sbjct: 1031 LEYGTCFGGSNVDVMGQILIDNGFSYSGKDFVTSGITGESLPAYVFFGPIYYQKLKHMVQ 1090

Query: 1349 DKIHARSRGPRVVLTRQPTGRRWK 1372
            DK+H+RSRGPR +LTRQPT  R +
Sbjct: 1091 DKMHSRSRGPRAILTRQPTEGRSR 1114



 Score =  206 bits (524), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 113/218 (51%), Positives = 148/218 (67%), Gaps = 8/218 (3%)

Query: 127 GLVKPH-IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKI-KAA 184
            +V P  +D  DY  N  ++   Q  + ++ D   LF     D+ + I DK++ K  +  
Sbjct: 416 AMVNPTLVDDRDYVGNKRLELAGQLLSLLFED---LFKKFNTDLKMNI-DKVLKKPNRGM 471

Query: 185 QFDIVNHMRQ--DTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRIN 242
           +FD  NHM+   + IT  +  AI TGNW+++RFKMER GVT VLSRLSYIS LGMMTRI+
Sbjct: 472 EFDAYNHMQSHGNYITIGMNRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRIS 531

Query: 243 SQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMY 302
           SQFEKTRKVSGPR+LQ SQ+GMLC SDTPEGEACGLVKNLALMTHITT +DE+ + K+ +
Sbjct: 532 SQFEKTRKVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTYDDEEPVKKLTF 591

Query: 303 NIGIEHIAMFNGEELSSPGVYLVFVNGILAGITCHHKE 340
            +G E I   +G+E+   G Y++FVNG    +T   K+
Sbjct: 592 VLGAEDIVSMSGKEIYEKGAYVIFVNGTPLALTRQPKK 629



 Score =  162 bits (409), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 78/136 (57%), Positives = 98/136 (72%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G   FDDFLY+G +EY+D NE NDS+IA+ E+ I    TTHLEI PFT+LG  AG     
Sbjct: 692 GTMDFDDFLYKGLLEYVDCNEENDSNIAIRENYINEA-TTHLEIEPFTVLGAVAG----- 745

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ +RIDTL+Y +VY Q+PMV+
Sbjct: 746 ---------LIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFSRIDTLLYLMVYPQQPMVK 796

Query: 808 SKTIRITNFHKLPAGK 823
           ++TI +  + KLPAG+
Sbjct: 797 TRTIELIKYDKLPAGQ 812



 Score =  106 bits (264), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 44/81 (54%), Positives = 67/81 (82%)

Query: 453 VDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLEL 512
           V+DA + L++  I H+PV+ + F+ KA+Y+  M+RR+++A+ +P ++DDRDY GNKRLEL
Sbjct: 377 VNDALEALANIIITHVPVVGLDFRPKALYICFMVRRVLMAMVNPTLVDDRDYVGNKRLEL 436

Query: 513 AGSLLSLMFEDVFKRFNSELK 533
           AG LLSL+FED+FK+FN++LK
Sbjct: 437 AGQLLSLLFEDLFKKFNTDLK 457



 Score = 82.0 bits (201), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/65 (55%), Positives = 50/65 (76%)

Query: 113 RDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           +DKW LV +FLK KGLVK HIDSF+YF+  EIK +++AN  + S+VDP F+L+Y DI VG
Sbjct: 87  KDKWNLVPAFLKVKGLVKQHIDSFNYFVEHEIKDIVKANKRVTSEVDPKFWLEYTDIRVG 146

Query: 173 IADKI 177
             +++
Sbjct: 147 EPERM 151



 Score = 79.3 bits (194), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 44/57 (77%)

Query: 355 QTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKTE 411
           + TP+ECRLRD+TY+API VDI+Y RG   V R ++ IGRMPIML+SSKC L  K +
Sbjct: 161 EITPNECRLRDMTYAAPIRVDIKYMRGRTIVARKNIAIGRMPIMLKSSKCRLAGKND 217


>gi|238483555|ref|XP_002373016.1| DNA-directed RNA polymerase III, beta subunit, putative [Aspergillus
            flavus NRRL3357]
 gi|220701066|gb|EED57404.1| DNA-directed RNA polymerase III, beta subunit, putative [Aspergillus
            flavus NRRL3357]
          Length = 1218

 Score =  317 bits (811), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 150/266 (56%), Positives = 196/266 (73%), Gaps = 7/266 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I  NQ  RID+++Y +VY Q+PMV+S+TI +T 
Sbjct: 751  GLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVYPQKPMVKSRTIELTK 810

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + +LPAG NA +AVMSYSGYDIEDAL++NK S+DRGFGRC V++ S   LK Y N T D 
Sbjct: 811  YDQLPAGHNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFKKSVANLKSYSNGTKDI 870

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSA----ISMATP 1088
            ++ P  E D   P+ +H  L+ DG+ A GEQ+   +V +NKS P  S+++      M  P
Sbjct: 871  LMPP--EYDNDAPIRKHALLESDGLAAVGEQVNAGEVYINKSTPDQSLASGFPGSDMGRP 928

Query: 1089 -EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
             +Y   P++YK   P+Y+++VLVS+   +  LIK+L RQTRRPE+GDKFSSRHGQKGV+G
Sbjct: 929  VKYTPTPMTYKLHDPAYIDQVLVSTTENENQLIKVLTRQTRRPEVGDKFSSRHGQKGVVG 988

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            +I +Q DMPF + GI PDIIMNPHG 
Sbjct: 989  IIADQADMPFTDQGINPDIIMNPHGF 1014



 Score =  261 bits (667), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 120/203 (59%), Positives = 158/203 (77%), Gaps = 2/203 (0%)

Query: 1172 GLKGCD--RITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFS 1229
            G  G D  R  +Y   P++YK   P+Y+++VLVS+   +  LIK+L RQTRRPE+GDKFS
Sbjct: 919  GFPGSDMGRPVKYTPTPMTYKLHDPAYIDQVLVSTTENENQLIKVLTRQTRRPEVGDKFS 978

Query: 1230 SRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNY 1289
            SRHGQKGV+G+I +Q DMPF + GI PDIIMNPHG+PSRMTVGK++EL+AGKAG++ G +
Sbjct: 979  SRHGQKGVVGIIADQADMPFTDQGINPDIIMNPHGFPSRMTVGKMLELVAGKAGVLAGQH 1038

Query: 1290 KEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQD 1349
              GT FGG+ + ++ + LI  G++Y GKD   SGITGEAL  Y+++GP+YYQKLKHMVQD
Sbjct: 1039 GYGTCFGGSPVEEMSQILIDKGFSYGGKDYLTSGITGEALPFYVFTGPIYYQKLKHMVQD 1098

Query: 1350 KIHARSRGPRVVLTRQPTGRRWK 1372
            K+H+R+RGPR +LTRQPT  R +
Sbjct: 1099 KMHSRARGPRAILTRQPTEGRSR 1121



 Score =  199 bits (505), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 103/205 (50%), Positives = 136/205 (66%), Gaps = 5/205 (2%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFD--IVN 190
           +D  DY  N  ++   Q  A ++ D   LF     DI + +   +  + +A  FD   V 
Sbjct: 429 VDDRDYLGNKRLELAGQLLALLFED---LFKKFCFDIKMNVDKVLNKRNRAEAFDAWTVM 485

Query: 191 HMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRK 250
            M  + IT  +  AI TGNW+++RF+MER GVT VLSRLSYI+ LGMMTRI+SQFEKTRK
Sbjct: 486 SMHSNHITQGMNRAISTGNWSLKRFRMERAGVTHVLSRLSYIAALGMMTRISSQFEKTRK 545

Query: 251 VSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIA 310
           VSGPR+LQ SQ+GMLC +DTPEGEACGLVKNLALMTHITT ++E  +  +++ +G E I+
Sbjct: 546 VSGPRALQPSQFGMLCLADTPEGEACGLVKNLALMTHITTNDEEGPIRNLIFMLGAEDIS 605

Query: 311 MFNGEELSSPGVYLVFVNGILAGIT 335
              G+EL  PG Y + +NG    +T
Sbjct: 606 TLGGKELYGPGCYTISINGTPMALT 630



 Score =  156 bits (394), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 77/135 (57%), Positives = 94/135 (69%), Gaps = 15/135 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G   FDDFL +G +EYLDVNE NDS IA+ E  I    TTHLEI PFT+LG  AG     
Sbjct: 698 GTMSFDDFLAQGLVEYLDVNEENDSLIAIYEKDITEA-TTHLEIEPFTVLGAVAG----- 751

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQA+G I  NQ  RID+++Y +VY Q+PMV+
Sbjct: 752 ---------LIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVYPQKPMVK 802

Query: 808 SKTIRITNFHKLPAG 822
           S+TI +T + +LPAG
Sbjct: 803 SRTIELTKYDQLPAG 817



 Score =  102 bits (255), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 49/104 (47%), Positives = 77/104 (74%), Gaps = 1/104 (0%)

Query: 439 KLRQKRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDM 498
           K+ + +   Y++T V +A + ++S  I+HI V +M F+ KA+Y+A M RR+++A +DP +
Sbjct: 369 KINRGKQNNYRRTHVQEAVEAIASVIISHIEVKDMNFRPKAVYVAHMARRVLMAKNDPSL 428

Query: 499 LDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELKETNLSGVVN 542
           +DDRDY GNKRLELAG LL+L+FED+FK+F  ++K  N+  V+N
Sbjct: 429 VDDRDYLGNKRLELAGQLLALLFEDLFKKFCFDIK-MNVDKVLN 471



 Score = 84.3 bits (207), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 37/54 (68%), Positives = 44/54 (81%)

Query: 357 TPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
           +PHECRLRD TY+API VD EY RG QRV ++   IGRMP+ML+SSKCVL +KT
Sbjct: 173 SPHECRLRDTTYAAPIQVDFEYIRGRQRVKKTGCSIGRMPVMLRSSKCVLSDKT 226



 Score = 73.6 bits (179), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 49/60 (81%)

Query: 113 RDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           +DKW L+ +FLK KGLVK HIDS++Y + V++KK++++++ I SD+D  FY+K+ DI++G
Sbjct: 93  KDKWNLLPAFLKVKGLVKQHIDSYNYLVEVQLKKIVESSSIIRSDIDHNFYIKFTDIYLG 152


>gi|67516079|ref|XP_657925.1| hypothetical protein AN0321.2 [Aspergillus nidulans FGSC A4]
 gi|40746571|gb|EAA65727.1| hypothetical protein AN0321.2 [Aspergillus nidulans FGSC A4]
          Length = 1656

 Score =  316 bits (810), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 150/266 (56%), Positives = 194/266 (72%), Gaps = 7/266 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I  NQ  RID+++Y +VY Q+PMV+S+TI +T 
Sbjct: 1189 GLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVYPQKPMVKSRTIELTK 1248

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + +LPAGQNAT+AVMSYSGYDIEDAL++NK S+DRGFGRC V+R     +K Y N T D 
Sbjct: 1249 YDQLPAGQNATVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYVTNMKSYSNGTKDI 1308

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSA----ISMATP 1088
            +  P  E D   P+ +H  L+ DG+ A GEQ+   +V +NKS P  S+S+         P
Sbjct: 1309 LSPPTYENDA--PIRKHALLESDGLAAVGEQVNAGEVYINKSTPDQSMSSGMPGSDAGRP 1366

Query: 1089 -EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
              Y   P++YK   P+Y++KV++S+   +  +IK+L RQTRRPE+GDKFSSRHGQKGV G
Sbjct: 1367 ISYNPTPMTYKLPDPAYIDKVMISATENENQIIKVLTRQTRRPEVGDKFSSRHGQKGVTG 1426

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            +IV+Q DMPF + GI PDIIMNPHG 
Sbjct: 1427 IIVDQADMPFTDQGINPDIIMNPHGF 1452



 Score =  260 bits (664), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 126/229 (55%), Positives = 166/229 (72%), Gaps = 5/229 (2%)

Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHGLKGCD--RITEYKEVPVSYKGSVPSYLEKVL 1201
              +G  V   ++  N+S   PD  M+  G+ G D  R   Y   P++YK   P+Y++KV+
Sbjct: 1332 AAVGEQVNAGEVYINKS--TPDQSMS-SGMPGSDAGRPISYNPTPMTYKLPDPAYIDKVM 1388

Query: 1202 VSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMN 1261
            +S+   +  +IK+L RQTRRPE+GDKFSSRHGQKGV G+IV+Q DMPF + GI PDIIMN
Sbjct: 1389 ISATENENQIIKVLTRQTRRPEVGDKFSSRHGQKGVTGIIVDQADMPFTDQGINPDIIMN 1448

Query: 1262 PHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFY 1321
            PHG+PSRMTVGK++EL+AGKAG++ G +  GT F GT +  + + LI  G++Y GKD   
Sbjct: 1449 PHGFPSRMTVGKMLELVAGKAGVLSGQHGYGTCFSGTPVEQMTQTLIDKGFSYGGKDYLT 1508

Query: 1322 SGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRR 1370
            SGITGEAL  Y+++GP+YYQKLKHMVQDK+H+R+RGPR  LTRQPT  R
Sbjct: 1509 SGITGEALPFYVFTGPIYYQKLKHMVQDKMHSRARGPRATLTRQPTEGR 1557



 Score =  193 bits (490), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 104/206 (50%), Positives = 138/206 (66%), Gaps = 7/206 (3%)

Query: 133  IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKI-KAAQFDI--V 189
            +D  DY  N  ++   Q  A ++ D   LF     DI + I DK++ K  +   FD   V
Sbjct: 867  VDDRDYLGNKRLELAGQLLALLFED---LFKKFCFDIKMNI-DKVLNKRNRVEAFDAWSV 922

Query: 190  NHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
              M  + IT  +  AI TGNW+++RF+MER GVT VLSRLSYI+ LGMMTRI+SQFEKTR
Sbjct: 923  IGMHSNHITQGMNRAISTGNWSLKRFRMERAGVTHVLSRLSYIAALGMMTRISSQFEKTR 982

Query: 250  KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHI 309
            KVSGPR+LQ SQ+GM+C +DTPEGEACGLVKNLALMTHITT ++E  +  +++ +G E I
Sbjct: 983  KVSGPRALQPSQFGMICLADTPEGEACGLVKNLALMTHITTNDEEGPIKNLIFMLGAEDI 1042

Query: 310  AMFNGEELSSPGVYLVFVNGILAGIT 335
                G+E+ +PG Y + +NG    +T
Sbjct: 1043 QTVGGKEIYAPGSYTISINGTPMALT 1068



 Score =  156 bits (394), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 75/136 (55%), Positives = 96/136 (70%), Gaps = 15/136 (11%)

Query: 688  GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
            G  +FDDFL +G +EY+DVNE NDS IA+ E  I    TTH+EI PFT+LG  AG     
Sbjct: 1136 GTMQFDDFLAQGLVEYVDVNEENDSLIAIYEKDI-TDTTTHMEIEPFTILGAVAG----- 1189

Query: 748  YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                     L+PYPHHNQ+PRNTYQCAMGKQA+G I  NQ  RID+++Y +VY Q+PMV+
Sbjct: 1190 ---------LIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVYPQKPMVK 1240

Query: 808  SKTIRITNFHKLPAGK 823
            S+TI +T + +LPAG+
Sbjct: 1241 SRTIELTKYDQLPAGQ 1256



 Score = 99.4 bits (246), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 49/104 (47%), Positives = 78/104 (75%), Gaps = 2/104 (1%)

Query: 439 KLRQKRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDM 498
           K+ +K+  +Y++T V +A + ++S  I+HI V +M F+ KA+Y+A M RR+++A +D  +
Sbjct: 808 KINRKQM-SYRRTHVQEAVEAIASVIISHIEVKDMNFRPKAIYVANMARRVLMAKNDAAL 866

Query: 499 LDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELKETNLSGVVN 542
           +DDRDY GNKRLELAG LL+L+FED+FK+F  ++K  N+  V+N
Sbjct: 867 VDDRDYLGNKRLELAGQLLALLFEDLFKKFCFDIK-MNIDKVLN 909



 Score = 89.7 bits (221), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 44/69 (63%), Positives = 49/69 (71%), Gaps = 5/69 (7%)

Query: 342 CKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQS 401
            + E EES       TPHECRLRD TY+API VD EY RG QRV R  + IGRMP+ML+S
Sbjct: 602 VRTEFEES-----TVTPHECRLRDTTYAAPIQVDFEYIRGRQRVRRKGVSIGRMPVMLRS 656

Query: 402 SKCVLRNKT 410
           SKCVL NKT
Sbjct: 657 SKCVLGNKT 665



 Score = 77.0 bits (188), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 44/120 (36%), Positives = 69/120 (57%), Gaps = 14/120 (11%)

Query: 113 RDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           +DKW L+ +FLK KGLVK HIDS++Y + V++KK+++++  I SDVD  FY+K+ DI++G
Sbjct: 532 KDKWNLLPAFLKVKGLVKQHIDSYNYLVEVQLKKIVESSNTIRSDVDHNFYIKFTDIYLG 591

Query: 173 IADKIIPKIKAAQFDIVNHMRQDTIT--------NALTAAIQTGNWTIR-RFKMERQGVT 223
                 P+      D+     + T+T            A IQ     IR R ++ R+GV+
Sbjct: 592 -----FPRRADEPQDVRTEFEESTVTPHECRLRDTTYAAPIQVDFEYIRGRQRVRRKGVS 646


>gi|296809049|ref|XP_002844863.1| DNA-directed RNA polymerase III subunit RPC2 [Arthroderma otae CBS
            113480]
 gi|238844346|gb|EEQ34008.1| DNA-directed RNA polymerase III subunit RPC2 [Arthroderma otae CBS
            113480]
          Length = 1211

 Score =  316 bits (810), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 148/266 (55%), Positives = 194/266 (72%), Gaps = 7/266 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I  NQ  RID+L+Y +VY Q+PMV+++TI +TN
Sbjct: 744  GLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYAMVYPQKPMVKTRTIELTN 803

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNA +AVMSYSGYDIEDAL++NK S+DRGFGRC V+R     LK Y N T DR
Sbjct: 804  YDKLPAGQNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYSANLKSYSNGTKDR 863

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATP---- 1088
            ++GP  E      + +H  LD DG+ A GE++   +V +NK  P  ++S+    +     
Sbjct: 864  LVGPTRENGV--SIRKHGLLDNDGLAAVGEKVSPGEVYINKETPDNALSSGITGSDAGLP 921

Query: 1089 -EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
             +Y   P +YK    SY++KV++S+   ++ LIK+  RQTRRPE+GDKFSSRHGQKGV+G
Sbjct: 922  VKYNPTPQTYKLPDYSYIDKVMISTTEGESQLIKVQTRQTRRPEVGDKFSSRHGQKGVVG 981

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            +I EQ DMPF ++G+ PDIIMNPHG 
Sbjct: 982  IIAEQADMPFTDTGLVPDIIMNPHGF 1007



 Score =  254 bits (648), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 116/203 (57%), Positives = 155/203 (76%), Gaps = 2/203 (0%)

Query: 1172 GLKGCDR--ITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFS 1229
            G+ G D     +Y   P +YK    SY++KV++S+   ++ LIK+  RQTRRPE+GDKFS
Sbjct: 912  GITGSDAGLPVKYNPTPQTYKLPDYSYIDKVMISTTEGESQLIKVQTRQTRRPEVGDKFS 971

Query: 1230 SRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNY 1289
            SRHGQKGV+G+I EQ DMPF ++G+ PDIIMNPHG+PSRMTVGK++EL+AGKAG++ G +
Sbjct: 972  SRHGQKGVVGIIAEQADMPFTDTGLVPDIIMNPHGFPSRMTVGKMLELVAGKAGIISGQF 1031

Query: 1290 KEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQD 1349
              GT FGG+ + ++   L+ HG++Y GKD   SGITGE L  Y+++GP+YYQKLKHMVQD
Sbjct: 1032 GYGTPFGGSPVEEMSAILVDHGFSYGGKDYLTSGITGEPLTYYVFTGPIYYQKLKHMVQD 1091

Query: 1350 KIHARSRGPRVVLTRQPTGRRWK 1372
            K+H+R+RGPR  LTRQPT  R +
Sbjct: 1092 KMHSRARGPRATLTRQPTEGRSR 1114



 Score =  198 bits (504), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 106/200 (53%), Positives = 137/200 (68%), Gaps = 7/200 (3%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPK-IKAAQFDI--V 189
           +D  DY  N  ++   Q  A ++ D   LF     DI + I DK++ K ++   FD   V
Sbjct: 422 VDDRDYVGNKRLELAGQLLALLFED---LFKKFCFDIKMNI-DKVLKKPVRTEAFDAYPV 477

Query: 190 NHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
             +  + IT  +  AI TGNW+++RF+MER GVT VLSRLSYI+ LGMMTRI+SQFEKTR
Sbjct: 478 VAIHGNHITQGMNRAIATGNWSLKRFRMERAGVTHVLSRLSYIAALGMMTRISSQFEKTR 537

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHI 309
           KVSGPR+LQ SQ+GMLC SDTPEGEACGLVKNLALMTHITT ++E+ + K+++ +G E I
Sbjct: 538 KVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTNDEEEPVQKLVFTLGAEDI 597

Query: 310 AMFNGEELSSPGVYLVFVNG 329
               G E    G Y+VF+NG
Sbjct: 598 QTVGGRECFGQGAYIVFMNG 617



 Score =  159 bits (402), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 78/136 (57%), Positives = 96/136 (70%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G   FDDFL  G +EY+DVNE ND++IAV E  I    TTHLEI PFT+LG  AG     
Sbjct: 691 GTMDFDDFLSNGLVEYVDVNEENDANIAVYEREIDAN-TTHLEIEPFTVLGAVAG----- 744

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQA+G I  NQ  RID+L+Y +VY Q+PMV+
Sbjct: 745 ---------LIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYAMVYPQKPMVK 795

Query: 808 SKTIRITNFHKLPAGK 823
           ++TI +TN+ KLPAG+
Sbjct: 796 TRTIELTNYDKLPAGQ 811



 Score = 94.0 bits (232), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 43/89 (48%), Positives = 65/89 (73%)

Query: 445 FQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDY 504
           F   ++  V +A + +SS  I+H+ V +M F+ KA+Y+  M RR+++A  DP ++DDRDY
Sbjct: 368 FGPARRNYVAEAIEAISSVIISHVQVQDMNFRPKALYVTYMARRVLMAKLDPSLVDDRDY 427

Query: 505 YGNKRLELAGSLLSLMFEDVFKRFNSELK 533
            GNKRLELAG LL+L+FED+FK+F  ++K
Sbjct: 428 VGNKRLELAGQLLALLFEDLFKKFCFDIK 456



 Score = 86.7 bits (213), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 38/54 (70%), Positives = 45/54 (83%)

Query: 357 TPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
           TP+ECRLRD+TY+API VD EY RG QRV R+   IGRMP+ML+SSKCVL NK+
Sbjct: 164 TPNECRLRDMTYAAPILVDFEYVRGRQRVKRNGTAIGRMPVMLRSSKCVLSNKS 217



 Score = 85.1 bits (209), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 35/60 (58%), Positives = 51/60 (85%)

Query: 113 RDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           RDKW L+ +FLK KGLVK HIDS++YF+ V++KK++Q++A I SD+DP FY+K+ DI++G
Sbjct: 86  RDKWNLLPAFLKVKGLVKQHIDSYNYFVEVQLKKIVQSSAEIRSDIDPKFYIKFHDIYLG 145


>gi|302820918|ref|XP_002992124.1| hypothetical protein SELMODRAFT_430375 [Selaginella moellendorffii]
 gi|300140050|gb|EFJ06779.1| hypothetical protein SELMODRAFT_430375 [Selaginella moellendorffii]
          Length = 1440

 Score =  316 bits (810), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 148/267 (55%), Positives = 194/267 (72%), Gaps = 11/267 (4%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG I YNQ  RIDTL+Y LVY QRP++ +K+I + N
Sbjct: 971  GLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLQRIDTLLYLLVYPQRPLLTTKSIELVN 1030

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KL AGQNA++AVMSYSGYDIEDA++MNKASLDRGFGRC+V +   C++++Y N+T DR
Sbjct: 1031 YDKLGAGQNASVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVLKKFSCLVRKYENRTMDR 1090

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMP----TISVSAISMATP 1088
            I+ P         +     LDQDGI + GE+I ++ + VNK  P    T  ++ +++   
Sbjct: 1091 IVAPRQHGHATSQL-----LDQDGIASVGERIYDKDIFVNKESPKDVKTTFLNPLALPDS 1145

Query: 1089 EYKEVPVSYKGSV--PSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVI 1146
             Y+  P  YKG +   + ++KVL+++N     +IK  +R TRRPE+GDKFSSRHGQKGV 
Sbjct: 1146 AYRPTPQRYKGPLGESAIVDKVLLTTNESQQMVIKCQVRHTRRPELGDKFSSRHGQKGVC 1205

Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G IVEQ+D PF E G+CPD+IMNPHG 
Sbjct: 1206 GTIVEQQDFPFTERGVCPDLIMNPHGF 1232



 Score =  249 bits (635), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 117/198 (59%), Positives = 148/198 (74%), Gaps = 7/198 (3%)

Query: 1180 TEYKEVPVSYKGSV--PSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV 1237
            + Y+  P  YKG +   + ++KVL+++N     +IK  +R TRRPE+GDKFSSRHGQKGV
Sbjct: 1145 SAYRPTPQRYKGPLGESAIVDKVLLTTNESQQMVIKCQVRHTRRPELGDKFSSRHGQKGV 1204

Query: 1238 IGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFG- 1296
             G IVEQ+D PF E G+CPD+IMNPHG+PSRMTVGK+IELL GKAG+  G Y  G+AFG 
Sbjct: 1205 CGTIVEQQDFPFTERGVCPDLIMNPHGFPSRMTVGKMIELLGGKAGVQSGKYHYGSAFGE 1264

Query: 1297 ----GTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIH 1352
                   +  +   L++HG++Y GKD+ YSGITG  L+AYIY GP+YYQKLKHMV DK+H
Sbjct: 1265 PSGHADTVEAISATLVKHGFSYCGKDLIYSGITGCPLQAYIYMGPIYYQKLKHMVLDKMH 1324

Query: 1353 ARSRGPRVVLTRQPTGRR 1370
            AR++GPRVVLTRQPT  R
Sbjct: 1325 ARAQGPRVVLTRQPTEGR 1342



 Score =  210 bits (535), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 105/218 (48%), Positives = 149/218 (68%), Gaps = 5/218 (2%)

Query: 118 LVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKI 177
           L+L  + E  L K  +D  DY  N  ++   Q  A ++ D   LF     ++   + D+ 
Sbjct: 636 LMLRRMLEAILDKECVDDRDYVGNKRLELAGQLLALLFED---LFKRSCSELKSNV-DRT 691

Query: 178 IPKI-KAAQFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLG 236
           + K+ +A+Q+D+   ++ D +T+ L  AI +GNWT++RF+M+++GVTQV+SRLSYI+ LG
Sbjct: 692 LSKMNRASQYDVSKSLKPDMLTSGLENAISSGNWTVKRFRMDKKGVTQVVSRLSYIAALG 751

Query: 237 MMTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKN 296
            MTR+ SQFEK+RKVSGPRSLQ SQWGMLCP DTPEGE CGL KNLALMTHITT+++E  
Sbjct: 752 HMTRVASQFEKSRKVSGPRSLQPSQWGMLCPCDTPEGEGCGLTKNLALMTHITTDDEEAP 811

Query: 297 MLKIMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
           ++ +  N+G+E I + +GEE  S   +LV  NG + GI
Sbjct: 812 LIDLCTNLGVEDINLLSGEEFHSKNAFLVMFNGTILGI 849



 Score =  164 bits (416), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 80/136 (58%), Positives = 97/136 (71%), Gaps = 15/136 (11%)

Query: 688  GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
            GF+ FDDFL EG +EYLDVNE N++ IA+ E       TTH+EI PFT+LGVCAG     
Sbjct: 918  GFRTFDDFLREGLVEYLDVNEENNALIALYEKEA-DSTTTHIEIEPFTILGVCAG----- 971

Query: 748  YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                     L+PYPHHNQ+PRNTYQCAMGKQAMG I YNQ  RIDTL+Y LVY QRP++ 
Sbjct: 972  ---------LIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLQRIDTLLYLLVYPQRPLLT 1022

Query: 808  SKTIRITNFHKLPAGK 823
            +K+I + N+ KL AG+
Sbjct: 1023 TKSIELVNYDKLGAGQ 1038



 Score = 99.0 bits (245), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/84 (55%), Positives = 64/84 (76%)

Query: 450 KTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKR 509
           K+ VD+ARD L +  +AH+ V    F+ K +Y+A+M+RRM+ A+ D + +DDRDY GNKR
Sbjct: 602 KSKVDEARDILLNVFLAHVAVHKYDFRPKCIYVALMLRRMLEAILDKECVDDRDYVGNKR 661

Query: 510 LELAGSLLSLMFEDVFKRFNSELK 533
           LELAG LL+L+FED+FKR  SELK
Sbjct: 662 LELAGQLLALLFEDLFKRSCSELK 685



 Score = 80.9 bits (198), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 42/78 (53%), Positives = 54/78 (69%), Gaps = 9/78 (11%)

Query: 341 VCKPEIEESFNYTRQ-TTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSD------LVIG 393
           V  P IE+  +Y RQ  TP +CRLRD+TYSAPI+VDIEYTRG   + R         VIG
Sbjct: 394 VGTPSIEQ--DYIRQDITPQQCRLRDMTYSAPISVDIEYTRGKDIITRKGKDGQGAQVIG 451

Query: 394 RMPIMLQSSKCVLRNKTE 411
           RMP+ML+SS+C+L  K++
Sbjct: 452 RMPVMLRSSRCILTGKSD 469



 Score = 67.8 bits (164), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 43/55 (78%), Gaps = 2/55 (3%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANAN--IYSDVDPLFYLKY 166
           DK++L+ +F K +GLVK H+DS++YF+N EIKK++ A  N  I SDVDP FY+KY
Sbjct: 319 DKFQLLPAFHKVRGLVKQHLDSYNYFVNCEIKKIIHAKGNEKITSDVDPNFYIKY 373


>gi|119182523|ref|XP_001242390.1| hypothetical protein CIMG_06286 [Coccidioides immitis RS]
 gi|392865284|gb|EAS31067.2| DNA-directed RNA polymerase III polypeptide [Coccidioides immitis RS]
          Length = 1233

 Score =  316 bits (810), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 148/266 (55%), Positives = 193/266 (72%), Gaps = 7/266 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I  NQ  RID+L+Y +VY Q+PMV+++TI +  
Sbjct: 766  GLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYTMVYPQKPMVKTRTIELVK 825

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQ+AT+AVMSYSGYDIEDAL++NK S+DRGFGRC V+R     LK Y N T DR
Sbjct: 826  YDKLPAGQSATVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYSANLKSYSNGTKDR 885

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATP---- 1088
            +LGP  +     P+ +H  LD DG+ A GE++   +V +NK+ P  ++S+    +     
Sbjct: 886  LLGP--DRQDGVPIRKHALLDNDGLAAVGEKVSSGEVYINKATPENALSSGITGSDAGGP 943

Query: 1089 -EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
              Y   P +YK   PSY++KV++S+   +  L+K+  RQTRRPE+GDKFSSRHGQKGV+G
Sbjct: 944  IAYIPSPQTYKLPDPSYIDKVMISTTEGENQLLKVQTRQTRRPEVGDKFSSRHGQKGVVG 1003

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            +I EQ DMPF + GI PDIIMNPHG 
Sbjct: 1004 IIAEQADMPFTDQGIVPDIIMNPHGF 1029



 Score =  261 bits (667), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 121/203 (59%), Positives = 156/203 (76%), Gaps = 2/203 (0%)

Query: 1172 GLKGCDR--ITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFS 1229
            G+ G D      Y   P +YK   PSY++KV++S+   +  L+K+  RQTRRPE+GDKFS
Sbjct: 934  GITGSDAGGPIAYIPSPQTYKLPDPSYIDKVMISTTEGENQLLKVQTRQTRRPEVGDKFS 993

Query: 1230 SRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNY 1289
            SRHGQKGV+G+I EQ DMPF + GI PDIIMNPHG+PSRMTVGK++EL+AGKAG++ G +
Sbjct: 994  SRHGQKGVVGIIAEQADMPFTDQGIVPDIIMNPHGFPSRMTVGKMLELVAGKAGILSGQF 1053

Query: 1290 KEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQD 1349
              GTAFGG+ + ++   LI  G+NY GKD   SGITGEAL AY+++GP+YYQKLKHMVQD
Sbjct: 1054 GYGTAFGGSPVEEMSAILISKGFNYGGKDYLTSGITGEALPAYVFTGPIYYQKLKHMVQD 1113

Query: 1350 KIHARSRGPRVVLTRQPTGRRWK 1372
            K+H+R+RGPR +LTRQPT  R +
Sbjct: 1114 KMHSRARGPRAILTRQPTEGRSR 1136



 Score =  203 bits (517), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 121/285 (42%), Positives = 168/285 (58%), Gaps = 34/285 (11%)

Query: 61  SLRELLSHVTYQKRLYRLTVQPNWLG---------TVKAVHGTYLTMVTDETSKLKDSPE 111
           +L  L SH+       ++T +PN  G          V+A+    ++ V  E    +    
Sbjct: 373 ALEYLGSHI-------KITRKPNGFGGGRRNYIQEAVEAIASVIISHVQVENMNFRPK-- 423

Query: 112 IRDKWKLVLSFLKEKGLVKPH----IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYL 167
                 L ++ +  + L+  H    +D  DY  N  ++   Q  A ++ D   LF     
Sbjct: 424 -----ALYVAHMARRVLMAKHDSSLVDDRDYVGNKRLELAGQLLALLFED---LFKKFCF 475

Query: 168 DIHVGIADKIIPK-IKAAQFDI--VNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQ 224
           DI + I DK++ K ++   FD   V  +  + IT  +  AI TGNW+++RF+MER GVT 
Sbjct: 476 DIKMNI-DKVLKKPVRTEAFDAFSVVAIHGNHITQGMNRAISTGNWSLKRFRMERAGVTH 534

Query: 225 VLSRLSYISGLGMMTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLAL 284
           VLSRLSYIS LGMMTRI+SQFEKTRKVSGPR+LQ SQ+GMLCPSDTPEGEACGLVKNLAL
Sbjct: 535 VLSRLSYISALGMMTRISSQFEKTRKVSGPRALQPSQFGMLCPSDTPEGEACGLVKNLAL 594

Query: 285 MTHITTENDEKNMLKIMYNIGIEHIAMFNGEELSSPGVYLVFVNG 329
           MTHITT ++E+ + K+++ +G E +    G E    G Y++F+NG
Sbjct: 595 MTHITTNDEEEPVRKLVFALGAEDVQAVGGREFYGQGAYIIFLNG 639



 Score =  160 bits (405), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 78/137 (56%), Positives = 96/137 (70%), Gaps = 15/137 (10%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G   FDDFL +G +EYLDVNE NDS+IAV E+ I    TTHLEI PFT+LG  AG     
Sbjct: 713 GTMEFDDFLAQGLVEYLDVNEENDSYIAVYENEINEN-TTHLEIEPFTILGAVAG----- 766

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQA+G I  NQ  RID+L+Y +VY Q+PMV+
Sbjct: 767 ---------LIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYTMVYPQKPMVK 817

Query: 808 SKTIRITNFHKLPAGKC 824
           ++TI +  + KLPAG+ 
Sbjct: 818 TRTIELVKYDKLPAGQS 834



 Score = 92.4 bits (228), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 42/89 (47%), Positives = 65/89 (73%)

Query: 445 FQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDY 504
           F   ++  + +A + ++S  I+H+ V NM F+ KA+Y+A M RR+++A  D  ++DDRDY
Sbjct: 390 FGGGRRNYIQEAVEAIASVIISHVQVENMNFRPKALYVAHMARRVLMAKHDSSLVDDRDY 449

Query: 505 YGNKRLELAGSLLSLMFEDVFKRFNSELK 533
            GNKRLELAG LL+L+FED+FK+F  ++K
Sbjct: 450 VGNKRLELAGQLLALLFEDLFKKFCFDIK 478



 Score = 88.6 bits (218), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/211 (33%), Positives = 98/211 (46%), Gaps = 36/211 (17%)

Query: 233 SGLGMMTRINSQFEKTRKV-SGPRSLQGSQWGMLCPSDT-PEGEACG------------L 278
           +G   M   NS+ ++T  + + P   QG + G      + P GE  G             
Sbjct: 32  TGASGMPAGNSKRKRTGDIKAAPAESQGKEGGADARRKSGPAGERKGRGHDDFEDLLQPF 91

Query: 279 VKNLALMTHITTENDEKNMLKIMYNI-GI--EHIAMFN-------------GEELSS--- 319
             N +L   I TE D+ N+L     + G+  +HI  +N               E+ S   
Sbjct: 92  YYNKSLTDPINTEKDKWNLLPAFLKVKGLVKQHIDSYNYFVEVQLKKIVQASAEIRSDVD 151

Query: 320 PGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYT 379
           P  Y+ F +  L       +E  +   +  F      TP+ECRLRD+TY+API VD EY 
Sbjct: 152 PNFYIRFHDIYLGSPRRADEEQSE---DARFKIESTVTPNECRLRDMTYAAPILVDFEYV 208

Query: 380 RGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
           RG QRV R+   IGRMP+ML+SSKCVL  K+
Sbjct: 209 RGRQRVKRNGTAIGRMPVMLRSSKCVLSKKS 239



 Score = 84.0 bits (206), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 35/60 (58%), Positives = 51/60 (85%)

Query: 113 RDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           +DKW L+ +FLK KGLVK HIDS++YF+ V++KK++QA+A I SDVDP FY+++ DI++G
Sbjct: 105 KDKWNLLPAFLKVKGLVKQHIDSYNYFVEVQLKKIVQASAEIRSDVDPNFYIRFHDIYLG 164


>gi|406699010|gb|EKD02230.1| DNA-directed RNA polymerase [Trichosporon asahii var. asahii CBS
            8904]
          Length = 941

 Score =  316 bits (810), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 151/261 (57%), Positives = 190/261 (72%), Gaps = 6/261 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ NRIDTL+Y + Y Q+PMV++KTI +  
Sbjct: 489  GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLNRIDTLLYLMTYPQQPMVKTKTIELVG 548

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + +LPAGQNAT+AVMSYSGYDIEDALI+N+AS DRGFGRC V +     ++ +PN T +R
Sbjct: 549  YDRLPAGQNATVAVMSYSGYDIEDALIVNRASADRGFGRCHVLKKQTIPIRSFPNGTSER 608

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKE 1092
            +   +L  D R     H  LDQDG+VAPG  + +  VL  +  P  +       T  +K 
Sbjct: 609  L--AMLPPDQRPET--HSWLDQDGLVAPGSVVSQGDVLAARETPMDTRGP--GPTVGFKA 662

Query: 1093 VPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQ 1152
             PV++K   P+ ++KV+V+   +   LIK+L RQTRRPE+GDKFSSRHGQKGV GLIV Q
Sbjct: 663  TPVAHKLPEPTNIDKVMVTDTEDGNQLIKILTRQTRRPELGDKFSSRHGQKGVCGLIVPQ 722

Query: 1153 EDMPFNESGICPDIIMNPHGL 1173
            +DMPFN+ GICPDIIMNPHG 
Sbjct: 723  QDMPFNDQGICPDIIMNPHGF 743



 Score =  272 bits (695), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 128/204 (62%), Positives = 156/204 (76%)

Query: 1169 NPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKF 1228
             P   +G      +K  PV++K   P+ ++KV+V+   +   LIK+L RQTRRPE+GDKF
Sbjct: 647  TPMDTRGPGPTVGFKATPVAHKLPEPTNIDKVMVTDTEDGNQLIKILTRQTRRPELGDKF 706

Query: 1229 SSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGN 1288
            SSRHGQKGV GLIV Q+DMPFN+ GICPDIIMNPHG+PSRMTVGK+IELL+GKAGLM G 
Sbjct: 707  SSRHGQKGVCGLIVPQQDMPFNDQGICPDIIMNPHGFPSRMTVGKMIELLSGKAGLMAGK 766

Query: 1289 YKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQ 1348
             + GTAFGG+K+VD+ + LI  G++Y GKD   SGITGE+LE Y+Y GP+YYQKLKHMV 
Sbjct: 767  LQYGTAFGGSKVVDMSQILIDAGFSYAGKDTLTSGITGESLETYVYFGPIYYQKLKHMVM 826

Query: 1349 DKIHARSRGPRVVLTRQPTGRRWK 1372
            DK+HAR  GPR  LTRQPT  R K
Sbjct: 827  DKMHARPTGPRANLTRQPTEGRSK 850



 Score =  203 bits (517), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 102/166 (61%), Positives = 124/166 (74%), Gaps = 4/166 (2%)

Query: 175 DKIIPK-IKAAQFDIVNHMRQ---DTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLS 230
           DKI+ K  +A  FD    +R    D IT+A   +I TGNW+++RF +ER GVT VLSRLS
Sbjct: 204 DKILEKKTRAGPFDASTLVRTGGGDIITSAFVRSISTGNWSLKRFHVERAGVTHVLSRLS 263

Query: 231 YISGLGMMTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITT 290
           +I+ LGMMTRI SQFEKTRKVSGPR+LQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT
Sbjct: 264 FIAALGMMTRITSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITT 323

Query: 291 ENDEKNMLKIMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAGITC 336
           +  E  ++K+ + +G E I++  G EL   GV+LV VNG L G+T 
Sbjct: 324 DVPEDPLIKLAFVLGAEDISLATGNELYRDGVHLVQVNGNLIGVTA 369



 Score =  159 bits (403), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 83/150 (55%), Positives = 98/150 (65%), Gaps = 18/150 (12%)

Query: 677 RPTFLNMHQFL---GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAP 733
           RP   + H  L   G   FD FL  G +EYLDVNE NDS IA  ES I    TTHLEI P
Sbjct: 422 RPRVTSEHMQLLKAGKVTFDHFLRSGLVEYLDVNEENDSFIACYESEITED-TTHLEIEP 480

Query: 734 FTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDT 793
           FT+LG  AG              L+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ NRIDT
Sbjct: 481 FTILGAVAG--------------LIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLNRIDT 526

Query: 794 LMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
           L+Y + Y Q+PMV++KTI +  + +LPAG+
Sbjct: 527 LLYLMTYPQQPMVKTKTIELVGYDRLPAGQ 556



 Score =  108 bits (269), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 52/100 (52%), Positives = 72/100 (72%)

Query: 435 LSCKKLRQKRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALS 494
           +S  + ++ R   +K TP D A   L++  + H+PV +M F+ KA+YLA M RR++ A+ 
Sbjct: 102 VSPTQEKEDRSLGHKLTPTDMAMQALAAMVLGHVPVRDMNFRPKAIYLATMSRRVLAAML 161

Query: 495 DPDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELKE 534
           D +M+DDRDY GNKRLELAG LLSL+FED FK FNS+LK+
Sbjct: 162 DENMVDDRDYVGNKRLELAGQLLSLLFEDSFKTFNSDLKK 201


>gi|303319249|ref|XP_003069624.1| DNA-directed RNA polymerase III, putative [Coccidioides posadasii
            C735 delta SOWgp]
 gi|240109310|gb|EER27479.1| DNA-directed RNA polymerase III, putative [Coccidioides posadasii
            C735 delta SOWgp]
 gi|320040958|gb|EFW22891.1| DNA-directed RNA polymerase 3 subunit RPC2 [Coccidioides posadasii
            str. Silveira]
          Length = 1197

 Score =  316 bits (809), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 148/266 (55%), Positives = 193/266 (72%), Gaps = 7/266 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I  NQ  RID+L+Y +VY Q+PMV+++TI +  
Sbjct: 730  GLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYTMVYPQKPMVKTRTIELVK 789

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQ+AT+AVMSYSGYDIEDAL++NK S+DRGFGRC V+R     LK Y N T DR
Sbjct: 790  YDKLPAGQSATVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYSANLKSYSNGTKDR 849

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATP---- 1088
            +LGP  +     P+ +H  LD DG+ A GE++   +V +NK+ P  ++S+    +     
Sbjct: 850  LLGP--DRQDGVPIRKHALLDNDGLAAVGEKVSSGEVYINKATPENALSSGITGSDAGGP 907

Query: 1089 -EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
              Y   P +YK   PSY++KV++S+   +  L+K+  RQTRRPE+GDKFSSRHGQKGV+G
Sbjct: 908  IAYIPSPQTYKLPDPSYIDKVMISTTEGENQLLKVQTRQTRRPEVGDKFSSRHGQKGVVG 967

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            +I EQ DMPF + GI PDIIMNPHG 
Sbjct: 968  IIAEQADMPFTDQGIVPDIIMNPHGF 993



 Score =  261 bits (666), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 118/191 (61%), Positives = 152/191 (79%)

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
            Y   P +YK   PSY++KV++S+   +  L+K+  RQTRRPE+GDKFSSRHGQKGV+G+I
Sbjct: 910  YIPSPQTYKLPDPSYIDKVMISTTEGENQLLKVQTRQTRRPEVGDKFSSRHGQKGVVGII 969

Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
             EQ DMPF + GI PDIIMNPHG+PSRMTVGK++EL+AGKAG++ G +  GTAFGG+ + 
Sbjct: 970  AEQADMPFTDQGIVPDIIMNPHGFPSRMTVGKMLELVAGKAGILSGQFGYGTAFGGSPVE 1029

Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
            ++   LI  G+NY GKD   SGITGEAL AY+++GP+YYQKLKHMVQDK+H+R+RGPR +
Sbjct: 1030 EMSAILISKGFNYGGKDYLTSGITGEALPAYVFTGPIYYQKLKHMVQDKMHSRARGPRAI 1089

Query: 1362 LTRQPTGRRWK 1372
            LTRQPT  R +
Sbjct: 1090 LTRQPTEGRSR 1100



 Score =  203 bits (517), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 121/285 (42%), Positives = 168/285 (58%), Gaps = 34/285 (11%)

Query: 61  SLRELLSHVTYQKRLYRLTVQPNWLG---------TVKAVHGTYLTMVTDETSKLKDSPE 111
           +L  L SH+       ++T +PN  G          V+A+    ++ V  E    +    
Sbjct: 337 ALEYLGSHI-------KITRKPNGFGGGRRNYIQEAVEAIASVIISHVQVENMNFRPKA- 388

Query: 112 IRDKWKLVLSFLKEKGLVKPH----IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYL 167
                 L ++ +  + L+  H    +D  DY  N  ++   Q  A ++ D   LF     
Sbjct: 389 ------LYVAHMARRVLMAKHDSSLVDDRDYVGNKRLELAGQLLALLFED---LFKKFCF 439

Query: 168 DIHVGIADKIIPK-IKAAQFDI--VNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQ 224
           DI + I DK++ K ++   FD   V  +  + IT  +  AI TGNW+++RF+MER GVT 
Sbjct: 440 DIKMNI-DKVLKKPVRTEAFDAFSVVAIHGNHITQGMNRAISTGNWSLKRFRMERAGVTH 498

Query: 225 VLSRLSYISGLGMMTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLAL 284
           VLSRLSYIS LGMMTRI+SQFEKTRKVSGPR+LQ SQ+GMLCPSDTPEGEACGLVKNLAL
Sbjct: 499 VLSRLSYISALGMMTRISSQFEKTRKVSGPRALQPSQFGMLCPSDTPEGEACGLVKNLAL 558

Query: 285 MTHITTENDEKNMLKIMYNIGIEHIAMFNGEELSSPGVYLVFVNG 329
           MTHITT ++E+ + K+++ +G E +    G E    G Y++F+NG
Sbjct: 559 MTHITTNDEEEPVRKLVFALGAEDVQAVGGREFYGQGAYIIFLNG 603



 Score =  160 bits (404), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 78/137 (56%), Positives = 96/137 (70%), Gaps = 15/137 (10%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G   FDDFL +G +EYLDVNE NDS+IAV E+ I    TTHLEI PFT+LG  AG     
Sbjct: 677 GTMEFDDFLAQGLVEYLDVNEENDSYIAVYENEINEN-TTHLEIEPFTILGAVAG----- 730

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQA+G I  NQ  RID+L+Y +VY Q+PMV+
Sbjct: 731 ---------LIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYTMVYPQKPMVK 781

Query: 808 SKTIRITNFHKLPAGKC 824
           ++TI +  + KLPAG+ 
Sbjct: 782 TRTIELVKYDKLPAGQS 798



 Score = 92.4 bits (228), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/89 (47%), Positives = 65/89 (73%)

Query: 445 FQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDY 504
           F   ++  + +A + ++S  I+H+ V NM F+ KA+Y+A M RR+++A  D  ++DDRDY
Sbjct: 354 FGGGRRNYIQEAVEAIASVIISHVQVENMNFRPKALYVAHMARRVLMAKHDSSLVDDRDY 413

Query: 505 YGNKRLELAGSLLSLMFEDVFKRFNSELK 533
            GNKRLELAG LL+L+FED+FK+F  ++K
Sbjct: 414 VGNKRLELAGQLLALLFEDLFKKFCFDIK 442



 Score = 87.8 bits (216), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 68/202 (33%), Positives = 95/202 (47%), Gaps = 36/202 (17%)

Query: 242 NSQFEKTRKV-SGPRSLQGSQWGMLCPSDT-PEGEACG------------LVKNLALMTH 287
           NS+ ++T  + + P   QG + G      + P GE  G               N +L   
Sbjct: 5   NSKRKRTGDIKAAPAESQGKEGGADARRKSGPAGERKGRGHDDFEDLLQPFYYNKSLTDP 64

Query: 288 ITTENDEKNMLKIMYNI-GI--EHIAMFN-------------GEELSS---PGVYLVFVN 328
           I TE D+ N+L     + G+  +HI  +N               E+ S   P  Y+ F +
Sbjct: 65  INTEKDKWNLLPAFLKVKGLVKQHIDSYNYFVEVQLKKIVQASAEIRSDVDPNFYIRFHD 124

Query: 329 GILAGITCHHKEVCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRS 388
             L       +E  +   +  F      TP+ECRLRD+TY+API VD EY RG QRV R+
Sbjct: 125 IYLGSPRRADEEQSE---DARFKIESTVTPNECRLRDMTYAAPILVDFEYVRGRQRVKRN 181

Query: 389 DLVIGRMPIMLQSSKCVLRNKT 410
              IGRMP+ML+SSKCVL  K+
Sbjct: 182 GTAIGRMPVMLRSSKCVLSKKS 203



 Score = 84.0 bits (206), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 35/60 (58%), Positives = 51/60 (85%)

Query: 113 RDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           +DKW L+ +FLK KGLVK HIDS++YF+ V++KK++QA+A I SDVDP FY+++ DI++G
Sbjct: 69  KDKWNLLPAFLKVKGLVKQHIDSYNYFVEVQLKKIVQASAEIRSDVDPNFYIRFHDIYLG 128


>gi|325182727|emb|CCA17182.1| PREDICTED: polymerase (RNA) III (DNA directed) polypeptide B isoform
            2 putative [Albugo laibachii Nc14]
          Length = 1177

 Score =  316 bits (809), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 156/282 (55%), Positives = 196/282 (69%), Gaps = 21/282 (7%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
             L+PYPHHNQ+PRNTYQCAMGKQA+G I  NQ  RIDTL+Y LVY   PMV+S+ + + N
Sbjct: 694  ALIPYPHHNQSPRNTYQCAMGKQAIGTIAMNQFERIDTLLYTLVYPHMPMVKSRVLDLVN 753

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F  +PAGQNA +AVMSYSGYDIEDA+++NKASLDRGFGRC V+R  + ++K+YPN T DR
Sbjct: 754  FDHVPAGQNAIVAVMSYSGYDIEDAIVLNKASLDRGFGRCTVFRKLQAMVKKYPNGTFDR 813

Query: 1033 ILGP-----LLEADTRKPV-------YRHRALDQDGIVAPGEQICERQVLVNKSMPT--- 1077
            I+GP     +L   T            R+ +LD DGI   G  +    +L+NK  P+   
Sbjct: 814  IVGPPDFESVLSTATGGTAAALGFRNARYASLDADGIARVGGIVHHGAILINKEQPSNAH 873

Query: 1078 ----ISVSAISMATPEYKEVPVSYKGSVPSYLEKVLVSSNS--EDAFLIKMLLRQTRRPE 1131
                 S S   +A+  Y   P  YKG+VPS ++KVL++S+   + + L+K+LLRQTRRPE
Sbjct: 874  SMGDTSGSNDPLASISYGPSPTCYKGAVPSIVDKVLITSSETYQTSLLVKVLLRQTRRPE 933

Query: 1132 IGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            IGDKFSSRHGQKGV G I  QEDMPFN+ GICPD+IMNPHG 
Sbjct: 934  IGDKFSSRHGQKGVCGTICSQEDMPFNDQGICPDLIMNPHGF 975



 Score =  263 bits (672), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 125/198 (63%), Positives = 155/198 (78%), Gaps = 7/198 (3%)

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNS--EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1239
            Y   P  YKG+VPS ++KVL++S+   + + L+K+LLRQTRRPEIGDKFSSRHGQKGV G
Sbjct: 890  YGPSPTCYKGAVPSIVDKVLITSSETYQTSLLVKVLLRQTRRPEIGDKFSSRHGQKGVCG 949

Query: 1240 LIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFG--- 1296
             I  QEDMPFN+ GICPD+IMNPHG+PSRMTVGK+IEL+AGKAG++ G    GTAFG   
Sbjct: 950  TICSQEDMPFNDQGICPDLIMNPHGFPSRMTVGKMIELVAGKAGVLHGRRAYGTAFGEKY 1009

Query: 1297 GT--KLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHAR 1354
            GT  ++++   +L++ G+NY GKD   SGITGE L  YI+ GP+YYQKLKHMV DK+HAR
Sbjct: 1010 GTADRVLECSRDLVKAGFNYAGKDYLTSGITGEPLLCYIFMGPIYYQKLKHMVMDKMHAR 1069

Query: 1355 SRGPRVVLTRQPTGRRWK 1372
            +RGPR VLTRQPT  R +
Sbjct: 1070 ARGPRAVLTRQPTEGRSR 1087



 Score =  205 bits (521), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 103/205 (50%), Positives = 143/205 (69%), Gaps = 5/205 (2%)

Query: 130 KPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKI-KAAQFDI 188
           +  +D  DY+ N  ++   Q  + ++ D   LF     D+    AD I+ K  +A+ FDI
Sbjct: 369 RTRLDDKDYYGNKRLELAGQLLSLLFED---LFKRFNSDLKRQ-ADMILSKPNRASMFDI 424

Query: 189 VNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKT 248
           V  +R DTIT     A+ TGNWT++RF+M+R GVT VLSRLSY+S LGMMTRI+SQFEKT
Sbjct: 425 VKCIRTDTITQGFIHALATGNWTLKRFRMDRAGVTHVLSRLSYMSALGMMTRISSQFEKT 484

Query: 249 RKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEH 308
           RKVSGPRSLQ SQWGMLCP+DTPEGEACGLVKNLAL+ H+T++ +   + ++ +++G+  
Sbjct: 485 RKVSGPRSLQPSQWGMLCPADTPEGEACGLVKNLALLCHVTSDEESDPIRRLCFDLGVTD 544

Query: 309 IAMFNGEELSSPGVYLVFVNGILAG 333
           + + +GE L+    YL+ +NGI+ G
Sbjct: 545 VCLCSGEALNHRSNYLIMLNGIIIG 569



 Score =  134 bits (336), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 68/132 (51%), Positives = 85/132 (64%), Gaps = 15/132 (11%)

Query: 695 FLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHS 754
            + EG +EY+DVNE N+  IA+ E  I    TTHLEI P T+LGV +             
Sbjct: 648 LIVEGCVEYVDVNEENNCLIALHEDDITVR-TTHLEIDPVTILGVVSA------------ 694

Query: 755 PGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRIT 814
             L+PYPHHNQ+PRNTYQCAMGKQA+G I  NQ  RIDTL+Y LVY   PMV+S+ + + 
Sbjct: 695 --LIPYPHHNQSPRNTYQCAMGKQAIGTIAMNQFERIDTLLYTLVYPHMPMVKSRVLDLV 752

Query: 815 NFHKLPAGKCQI 826
           NF  +PAG+  I
Sbjct: 753 NFDHVPAGQNAI 764



 Score = 92.4 bits (228), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/81 (51%), Positives = 60/81 (74%)

Query: 453 VDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLEL 512
            + AR  L++  + H+P    +F++K +Y+A ++RR++    D   LDD+DYYGNKRLEL
Sbjct: 326 AETARAALANLVLNHVPCEIDQFRLKCVYIAHIVRRIIFTDRDRTRLDDKDYYGNKRLEL 385

Query: 513 AGSLLSLMFEDVFKRFNSELK 533
           AG LLSL+FED+FKRFNS+LK
Sbjct: 386 AGQLLSLLFEDLFKRFNSDLK 406



 Score = 78.6 bits (192), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/64 (54%), Positives = 48/64 (75%), Gaps = 2/64 (3%)

Query: 111 EIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANAN--IYSDVDPLFYLKYLD 168
           +++DKWKL+  FL+ +GLVK HIDSFDYF   E+KK++ A AN  + SD DP F+L+Y D
Sbjct: 33  KLQDKWKLLPYFLQLRGLVKQHIDSFDYFTATELKKIVHAKANNVVRSDADPKFFLQYTD 92

Query: 169 IHVG 172
           I +G
Sbjct: 93  IQIG 96



 Score = 75.9 bits (185), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 48/70 (68%)

Query: 340 EVCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIML 399
           ++  P IEE    +   TPH+CRLRD TY+AP+ V ++Y RG + V  + ++IGR+PIML
Sbjct: 94  QIGNPSIEEDAFVSSTVTPHQCRLRDRTYAAPVYVSVKYRRGPKIVTNNKVLIGRIPIML 153

Query: 400 QSSKCVLRNK 409
           +S+ CVL  K
Sbjct: 154 RSANCVLTGK 163


>gi|259489446|tpe|CBF89725.1| TPA: DNA-directed RNA polymerase III, beta subunit, putative
            (AFU_orthologue; AFUA_1G02460) [Aspergillus nidulans FGSC
            A4]
          Length = 1225

 Score =  316 bits (809), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 150/266 (56%), Positives = 194/266 (72%), Gaps = 7/266 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I  NQ  RID+++Y +VY Q+PMV+S+TI +T 
Sbjct: 758  GLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVYPQKPMVKSRTIELTK 817

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + +LPAGQNAT+AVMSYSGYDIEDAL++NK S+DRGFGRC V+R     +K Y N T D 
Sbjct: 818  YDQLPAGQNATVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYVTNMKSYSNGTKDI 877

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSA----ISMATP 1088
            +  P  E D   P+ +H  L+ DG+ A GEQ+   +V +NKS P  S+S+         P
Sbjct: 878  LSPPTYENDA--PIRKHALLESDGLAAVGEQVNAGEVYINKSTPDQSMSSGMPGSDAGRP 935

Query: 1089 -EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
              Y   P++YK   P+Y++KV++S+   +  +IK+L RQTRRPE+GDKFSSRHGQKGV G
Sbjct: 936  ISYNPTPMTYKLPDPAYIDKVMISATENENQIIKVLTRQTRRPEVGDKFSSRHGQKGVTG 995

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            +IV+Q DMPF + GI PDIIMNPHG 
Sbjct: 996  IIVDQADMPFTDQGINPDIIMNPHGF 1021



 Score =  260 bits (664), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 126/231 (54%), Positives = 167/231 (72%), Gaps = 5/231 (2%)

Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHGLKGCD--RITEYKEVPVSYKGSVPSYLEKVL 1201
              +G  V   ++  N+S   PD  M+  G+ G D  R   Y   P++YK   P+Y++KV+
Sbjct: 901  AAVGEQVNAGEVYINKS--TPDQSMS-SGMPGSDAGRPISYNPTPMTYKLPDPAYIDKVM 957

Query: 1202 VSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMN 1261
            +S+   +  +IK+L RQTRRPE+GDKFSSRHGQKGV G+IV+Q DMPF + GI PDIIMN
Sbjct: 958  ISATENENQIIKVLTRQTRRPEVGDKFSSRHGQKGVTGIIVDQADMPFTDQGINPDIIMN 1017

Query: 1262 PHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFY 1321
            PHG+PSRMTVGK++EL+AGKAG++ G +  GT F GT +  + + LI  G++Y GKD   
Sbjct: 1018 PHGFPSRMTVGKMLELVAGKAGVLSGQHGYGTCFSGTPVEQMTQTLIDKGFSYGGKDYLT 1077

Query: 1322 SGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
            SGITGEAL  Y+++GP+YYQKLKHMVQDK+H+R+RGPR  LTRQPT  R +
Sbjct: 1078 SGITGEALPFYVFTGPIYYQKLKHMVQDKMHSRARGPRATLTRQPTEGRSR 1128



 Score =  194 bits (492), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 101/205 (49%), Positives = 135/205 (65%), Gaps = 5/205 (2%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDI--VN 190
           +D  DY  N  ++   Q  A ++ D   LF     DI + I   +  + +   FD   V 
Sbjct: 436 VDDRDYLGNKRLELAGQLLALLFED---LFKKFCFDIKMNIDKVLNKRNRVEAFDAWSVI 492

Query: 191 HMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRK 250
            M  + IT  +  AI TGNW+++RF+MER GVT VLSRLSYI+ LGMMTRI+SQFEKTRK
Sbjct: 493 GMHSNHITQGMNRAISTGNWSLKRFRMERAGVTHVLSRLSYIAALGMMTRISSQFEKTRK 552

Query: 251 VSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIA 310
           VSGPR+LQ SQ+GM+C +DTPEGEACGLVKNLALMTHITT ++E  +  +++ +G E I 
Sbjct: 553 VSGPRALQPSQFGMICLADTPEGEACGLVKNLALMTHITTNDEEGPIKNLIFMLGAEDIQ 612

Query: 311 MFNGEELSSPGVYLVFVNGILAGIT 335
              G+E+ +PG Y + +NG    +T
Sbjct: 613 TVGGKEIYAPGSYTISINGTPMALT 637



 Score =  156 bits (394), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 75/136 (55%), Positives = 96/136 (70%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G  +FDDFL +G +EY+DVNE NDS IA+ E  I    TTH+EI PFT+LG  AG     
Sbjct: 705 GTMQFDDFLAQGLVEYVDVNEENDSLIAIYEKDI-TDTTTHMEIEPFTILGAVAG----- 758

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQA+G I  NQ  RID+++Y +VY Q+PMV+
Sbjct: 759 ---------LIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVYPQKPMVK 809

Query: 808 SKTIRITNFHKLPAGK 823
           S+TI +T + +LPAG+
Sbjct: 810 SRTIELTKYDQLPAGQ 825



 Score = 99.0 bits (245), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/104 (47%), Positives = 78/104 (75%), Gaps = 2/104 (1%)

Query: 439 KLRQKRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDM 498
           K+ +K+  +Y++T V +A + ++S  I+HI V +M F+ KA+Y+A M RR+++A +D  +
Sbjct: 377 KINRKQM-SYRRTHVQEAVEAIASVIISHIEVKDMNFRPKAIYVANMARRVLMAKNDAAL 435

Query: 499 LDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELKETNLSGVVN 542
           +DDRDY GNKRLELAG LL+L+FED+FK+F  ++K  N+  V+N
Sbjct: 436 VDDRDYLGNKRLELAGQLLALLFEDLFKKFCFDIK-MNIDKVLN 478



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/69 (63%), Positives = 49/69 (71%), Gaps = 5/69 (7%)

Query: 342 CKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQS 401
            + E EES       TPHECRLRD TY+API VD EY RG QRV R  + IGRMP+ML+S
Sbjct: 171 VRTEFEES-----TVTPHECRLRDTTYAAPIQVDFEYIRGRQRVRRKGVSIGRMPVMLRS 225

Query: 402 SKCVLRNKT 410
           SKCVL NKT
Sbjct: 226 SKCVLGNKT 234



 Score = 77.8 bits (190), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/120 (36%), Positives = 69/120 (57%), Gaps = 14/120 (11%)

Query: 113 RDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           +DKW L+ +FLK KGLVK HIDS++Y + V++KK+++++  I SDVD  FY+K+ DI++G
Sbjct: 101 KDKWNLLPAFLKVKGLVKQHIDSYNYLVEVQLKKIVESSNTIRSDVDHNFYIKFTDIYLG 160

Query: 173 IADKIIPKIKAAQFDIVNHMRQDTIT--------NALTAAIQTGNWTIR-RFKMERQGVT 223
                 P+      D+     + T+T            A IQ     IR R ++ R+GV+
Sbjct: 161 -----FPRRADEPQDVRTEFEESTVTPHECRLRDTTYAAPIQVDFEYIRGRQRVRRKGVS 215


>gi|327300783|ref|XP_003235084.1| DNA-directed RNA polymerase III [Trichophyton rubrum CBS 118892]
 gi|326462436|gb|EGD87889.1| DNA-directed RNA polymerase III [Trichophyton rubrum CBS 118892]
          Length = 1210

 Score =  316 bits (809), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 148/266 (55%), Positives = 194/266 (72%), Gaps = 7/266 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I  NQ  RID+L+Y +VY Q+PMV+++TI +TN
Sbjct: 743  GLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYAMVYPQKPMVKTRTIELTN 802

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNA +AVMSYSGYDIEDAL++NK S+DRGFGRC V+R     LK Y N T DR
Sbjct: 803  YDKLPAGQNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYSANLKSYSNGTKDR 862

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATP---- 1088
            ++GP  E      + +H  LD DG+ A GE++   +V +NK  P  ++S+    +     
Sbjct: 863  LVGPTRENGV--SIRKHGLLDNDGLAAVGEKVSPGEVYINKETPDNALSSGITGSDAGLP 920

Query: 1089 -EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
             +Y   P +YK    SY++KV++S+   ++ LIK+  RQTRRPE+GDKFSSRHGQKGV+G
Sbjct: 921  VKYNPTPQTYKLPDYSYIDKVMISTTEGESQLIKVQTRQTRRPEVGDKFSSRHGQKGVVG 980

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            +I EQ DMPF ++G+ PDIIMNPHG 
Sbjct: 981  IIAEQADMPFTDTGLVPDIIMNPHGF 1006



 Score =  254 bits (649), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 116/203 (57%), Positives = 155/203 (76%), Gaps = 2/203 (0%)

Query: 1172 GLKGCDR--ITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFS 1229
            G+ G D     +Y   P +YK    SY++KV++S+   ++ LIK+  RQTRRPE+GDKFS
Sbjct: 911  GITGSDAGLPVKYNPTPQTYKLPDYSYIDKVMISTTEGESQLIKVQTRQTRRPEVGDKFS 970

Query: 1230 SRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNY 1289
            SRHGQKGV+G+I EQ DMPF ++G+ PDIIMNPHG+PSRMTVGK++EL+AGKAG++ G +
Sbjct: 971  SRHGQKGVVGIIAEQADMPFTDTGLVPDIIMNPHGFPSRMTVGKMLELVAGKAGIISGQF 1030

Query: 1290 KEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQD 1349
              GT FGG+ + ++   L+ HG++Y GKD   SGITGE L  Y+++GP+YYQKLKHMVQD
Sbjct: 1031 GYGTPFGGSPVEEMSAILVDHGFSYGGKDYLTSGITGEPLTYYVFTGPIYYQKLKHMVQD 1090

Query: 1350 KIHARSRGPRVVLTRQPTGRRWK 1372
            K+H+R+RGPR  LTRQPT  R +
Sbjct: 1091 KMHSRARGPRATLTRQPTEGRSR 1113



 Score =  199 bits (506), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 106/200 (53%), Positives = 137/200 (68%), Gaps = 7/200 (3%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPK-IKAAQFDI--V 189
           +D  DY  N  ++   Q  A ++ D   LF     DI + I DK++ K ++   FD   V
Sbjct: 421 VDDRDYVGNKRLELAGQLLALLFED---LFKKFCFDIKMNI-DKVLKKPVRTEAFDAYPV 476

Query: 190 NHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
             +  + IT  +  AI TGNW+++RF+MER GVT VLSRLSYI+ LGMMTRI+SQFEKTR
Sbjct: 477 VAIHGNHITQGMNRAIATGNWSLKRFRMERAGVTHVLSRLSYIAALGMMTRISSQFEKTR 536

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHI 309
           KVSGPR+LQ SQ+GMLC SDTPEGEACGLVKNLALMTHITT ++E+ + K+++ +G E I
Sbjct: 537 KVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTNDEEEPVQKLVFTLGAEDI 596

Query: 310 AMFNGEELSSPGVYLVFVNG 329
               G E    G Y+VF+NG
Sbjct: 597 QTVGGRECFGQGAYIVFMNG 616



 Score =  159 bits (402), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 78/136 (57%), Positives = 96/136 (70%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G   FDDFL  G +EY+DVNE ND++IAV E  I    TTHLEI PFT+LG  AG     
Sbjct: 690 GTMDFDDFLSNGLVEYVDVNEENDANIAVYEREIDAN-TTHLEIEPFTVLGAVAG----- 743

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQA+G I  NQ  RID+L+Y +VY Q+PMV+
Sbjct: 744 ---------LIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYAMVYPQKPMVK 794

Query: 808 SKTIRITNFHKLPAGK 823
           ++TI +TN+ KLPAG+
Sbjct: 795 TRTIELTNYDKLPAGQ 810



 Score = 93.2 bits (230), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/89 (48%), Positives = 65/89 (73%)

Query: 445 FQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDY 504
           F   ++  V +A + +SS  I+H+ V +M F+ KA+Y+  M RR+++A  DP ++DDRDY
Sbjct: 367 FGPARRNYVAEAIEAISSVIISHVQVQDMNFRPKALYVTHMARRVLMAKLDPSLVDDRDY 426

Query: 505 YGNKRLELAGSLLSLMFEDVFKRFNSELK 533
            GNKRLELAG LL+L+FED+FK+F  ++K
Sbjct: 427 VGNKRLELAGQLLALLFEDLFKKFCFDIK 455



 Score = 86.7 bits (213), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 38/54 (70%), Positives = 45/54 (83%)

Query: 357 TPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
           TP+ECRLRD+TY+API VD EY RG QRV R+   IGRMP+ML+SSKCVL NK+
Sbjct: 163 TPNECRLRDMTYAAPILVDFEYVRGRQRVKRNGTAIGRMPVMLRSSKCVLSNKS 216



 Score = 84.0 bits (206), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 34/60 (56%), Positives = 51/60 (85%)

Query: 113 RDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           RDKW L+ +FLK KGLVK HIDS++YF+ V+++K++Q++A I SD+DP FY+K+ DI++G
Sbjct: 85  RDKWNLLPAFLKVKGLVKQHIDSYNYFVEVQLRKIVQSSAEIRSDIDPKFYIKFHDIYLG 144


>gi|326468641|gb|EGD92650.1| DNA-directed RNA polymerase III [Trichophyton tonsurans CBS 112818]
          Length = 1210

 Score =  316 bits (809), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 148/266 (55%), Positives = 194/266 (72%), Gaps = 7/266 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I  NQ  RID+L+Y +VY Q+PMV+++TI +TN
Sbjct: 743  GLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYAMVYPQKPMVKTRTIELTN 802

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNA +AVMSYSGYDIEDAL++NK S+DRGFGRC V+R     LK Y N T DR
Sbjct: 803  YDKLPAGQNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYSANLKSYSNGTKDR 862

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATP---- 1088
            ++GP  E      + +H  LD DG+ A GE++   +V +NK  P  ++S+    +     
Sbjct: 863  LVGPTRENGV--SIRKHGLLDNDGLAAVGEKVSPGEVYINKETPDNALSSGITGSDAGLP 920

Query: 1089 -EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
             +Y   P +YK    SY++KV++S+   ++ LIK+  RQTRRPE+GDKFSSRHGQKGV+G
Sbjct: 921  VKYNPTPQTYKLPDYSYIDKVMISTTEGESQLIKVQTRQTRRPEVGDKFSSRHGQKGVVG 980

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            +I EQ DMPF ++G+ PDIIMNPHG 
Sbjct: 981  IIAEQADMPFTDTGLVPDIIMNPHGF 1006



 Score =  254 bits (648), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 116/203 (57%), Positives = 155/203 (76%), Gaps = 2/203 (0%)

Query: 1172 GLKGCDR--ITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFS 1229
            G+ G D     +Y   P +YK    SY++KV++S+   ++ LIK+  RQTRRPE+GDKFS
Sbjct: 911  GITGSDAGLPVKYNPTPQTYKLPDYSYIDKVMISTTEGESQLIKVQTRQTRRPEVGDKFS 970

Query: 1230 SRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNY 1289
            SRHGQKGV+G+I EQ DMPF ++G+ PDIIMNPHG+PSRMTVGK++EL+AGKAG++ G +
Sbjct: 971  SRHGQKGVVGIIAEQADMPFTDTGLVPDIIMNPHGFPSRMTVGKMLELVAGKAGIISGQF 1030

Query: 1290 KEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQD 1349
              GT FGG+ + ++   L+ HG++Y GKD   SGITGE L  Y+++GP+YYQKLKHMVQD
Sbjct: 1031 GYGTPFGGSPVEEMSAILVDHGFSYGGKDYLTSGITGEPLTYYVFTGPIYYQKLKHMVQD 1090

Query: 1350 KIHARSRGPRVVLTRQPTGRRWK 1372
            K+H+R+RGPR  LTRQPT  R +
Sbjct: 1091 KMHSRARGPRATLTRQPTEGRSR 1113



 Score =  197 bits (502), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 106/200 (53%), Positives = 137/200 (68%), Gaps = 7/200 (3%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPK-IKAAQFDI--V 189
           +D  DY  N  ++   Q  A ++ D   LF     DI + I DK++ K ++   FD   V
Sbjct: 421 VDDRDYVGNKRLELAGQLLALLFED---LFKKFCFDIKMNI-DKVLKKPVRTEAFDAYPV 476

Query: 190 NHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
             +  + IT  +  AI TGNW+++RF+MER GVT VLSRLSYI+ LGMMTRI+SQFEKTR
Sbjct: 477 VAIHGNHITQGMNRAIATGNWSLKRFRMERAGVTHVLSRLSYIAALGMMTRISSQFEKTR 536

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHI 309
           KVSGPR+LQ SQ+GMLC SDTPEGEACGLVKNLALMTHITT ++E+ + K+++ +G E I
Sbjct: 537 KVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTNDEEEPVQKLVFILGAEDI 596

Query: 310 AMFNGEELSSPGVYLVFVNG 329
               G E    G Y+VF+NG
Sbjct: 597 QTVGGRECFGQGAYIVFMNG 616



 Score =  159 bits (402), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 78/136 (57%), Positives = 96/136 (70%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G   FDDFL  G +EY+DVNE ND++IAV E  I    TTHLEI PFT+LG  AG     
Sbjct: 690 GTMDFDDFLSNGLVEYVDVNEENDANIAVYEREIDAN-TTHLEIEPFTVLGAVAG----- 743

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQA+G I  NQ  RID+L+Y +VY Q+PMV+
Sbjct: 744 ---------LIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYAMVYPQKPMVK 794

Query: 808 SKTIRITNFHKLPAGK 823
           ++TI +TN+ KLPAG+
Sbjct: 795 TRTIELTNYDKLPAGQ 810



 Score = 93.2 bits (230), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 43/89 (48%), Positives = 65/89 (73%)

Query: 445 FQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDY 504
           F   ++  V +A + +SS  I+H+ V +M F+ KA+Y+  M RR+++A  DP ++DDRDY
Sbjct: 367 FGPARRNYVAEAIEAISSVIISHVQVQDMNFRPKALYVTHMARRVLMAKLDPSLVDDRDY 426

Query: 505 YGNKRLELAGSLLSLMFEDVFKRFNSELK 533
            GNKRLELAG LL+L+FED+FK+F  ++K
Sbjct: 427 VGNKRLELAGQLLALLFEDLFKKFCFDIK 455



 Score = 86.7 bits (213), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 38/54 (70%), Positives = 45/54 (83%)

Query: 357 TPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
           TP+ECRLRD+TY+API VD EY RG QRV R+   IGRMP+ML+SSKCVL NK+
Sbjct: 163 TPNECRLRDMTYAAPILVDFEYVRGRQRVKRNGTAIGRMPVMLRSSKCVLSNKS 216



 Score = 85.1 bits (209), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 35/60 (58%), Positives = 51/60 (85%)

Query: 113 RDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           RDKW L+ +FLK KGLVK HIDS++YF+ V++KK++Q++A I SD+DP FY+K+ DI++G
Sbjct: 85  RDKWNLLPAFLKVKGLVKQHIDSYNYFVEVQLKKIVQSSAEIRSDIDPKFYIKFHDIYLG 144


>gi|307103979|gb|EFN52235.1| hypothetical protein CHLNCDRAFT_56318 [Chlorella variabilis]
          Length = 1155

 Score =  316 bits (809), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 153/271 (56%), Positives = 200/271 (73%), Gaps = 11/271 (4%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+P+PHHNQ+PRNTYQCAMGKQAMG + +NQ NR+DTL+Y L Y QRP++ +KTI +  
Sbjct: 679  GLIPFPHHNQSPRNTYQCAMGKQAMGNVAFNQLNRMDTLLYLLCYPQRPLLTTKTIELVG 738

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F +L AGQNAT+AVMSYSGYDIEDA++MN+ASLDRGFGRC+V R     LK+Y N+T DR
Sbjct: 739  FDRLGAGQNATVAVMSYSGYDIEDAIVMNRASLDRGFGRCIVLRKYGTSLKKYANRTQDR 798

Query: 1033 ILGPLLE---ADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAIS--MAT 1087
            I+ P      A   +P  + R LD+DGI A GE + + ++LVNK MPT +   +S   A 
Sbjct: 799  IVLPAAAVGPASAPRPA-KFRVLDRDGIAAAGEVLTQGEILVNKQMPTNTRDPVSNPAAM 857

Query: 1088 PE--YKEVPVSYKGSV---PSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQ 1142
            P+  Y+  PVS+KG        ++KVL++SN + + ++K+L+R TRRPE+GDKFSSRHGQ
Sbjct: 858  PDTFYRNAPVSWKGYTGGEKCVVDKVLLTSNDDCSCVVKVLVRHTRRPELGDKFSSRHGQ 917

Query: 1143 KGVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            KGV+G I  Q DMPF+E G+ PD+IMNPHG 
Sbjct: 918  KGVVGSIWSQSDMPFSERGLVPDLIMNPHGF 948



 Score =  252 bits (644), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 128/234 (54%), Positives = 164/234 (70%), Gaps = 16/234 (6%)

Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSV---PSYLEKVLVS 1203
            G I+  + MP N      D + NP  +      T Y+  PVS+KG        ++KVL++
Sbjct: 835  GEILVNKQMPTNTR----DPVSNPAAMPD----TFYRNAPVSWKGYTGGEKCVVDKVLLT 886

Query: 1204 SNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPH 1263
            SN + + ++K+L+R TRRPE+GDKFSSRHGQKGV+G I  Q DMPF+E G+ PD+IMNPH
Sbjct: 887  SNDDCSCVVKVLVRHTRRPELGDKFSSRHGQKGVVGSIWSQSDMPFSERGLVPDLIMNPH 946

Query: 1264 GYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFG-----GTKLVDVQEELIRHGYNYQGKD 1318
            G+PSRMTVGK+IELL  KA +  G +  GTAFG       K+  + +EL+  GY+Y GKD
Sbjct: 947  GFPSRMTVGKMIELLGSKAAVCTGRFHYGTAFGEPAGLADKVESISQELVEAGYSYSGKD 1006

Query: 1319 IFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
              +SGITGEALEA+I+ GPVYYQKLKHMV DK+HAR+RGPRVVLTRQPT  R +
Sbjct: 1007 FLHSGITGEALEAHIFMGPVYYQKLKHMVLDKMHARARGPRVVLTRQPTEGRSR 1060



 Score =  212 bits (540), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 107/202 (52%), Positives = 139/202 (68%), Gaps = 3/202 (1%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVNHM 192
           ID  DY+ N  ++      A ++ D   LF     D+       +    +A QFDI   +
Sbjct: 361 IDDRDYYGNKRLELAGGLLALLFED---LFKRMNADLKRQADSSLSKANRATQFDIAKCI 417

Query: 193 RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVS 252
           R DTIT  L  AI +GNWTI+RF+MER+GVTQVLSRLS+IS +GMMTRI SQFEKTRKVS
Sbjct: 418 RTDTITFGLEHAISSGNWTIKRFRMERKGVTQVLSRLSFISAVGMMTRITSQFEKTRKVS 477

Query: 253 GPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMF 312
           GPR+LQ SQWGMLCP+DTPEGE+CGLVKNLALMTH+TT+ +E  + ++ + +G+E  ++ 
Sbjct: 478 GPRALQPSQWGMLCPADTPEGESCGLVKNLALMTHVTTDEEEAPIARLAHIMGVEPASLV 537

Query: 313 NGEELSSPGVYLVFVNGILAGI 334
           N  EL   G  LVF+NG + G+
Sbjct: 538 NQSELRERGCALVFLNGNILGV 559



 Score =  149 bits (376), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 73/137 (53%), Positives = 95/137 (69%), Gaps = 15/137 (10%)

Query: 687 LGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELL 746
           +G   F+ FL+ G +EYLDVNE N+S +A+ E+   P VT HLEI PFT+LGV AG    
Sbjct: 625 MGKWNFNSFLHSGLLEYLDVNEENNSLVALYEADCGPRVT-HLEIEPFTILGVVAG---- 679

Query: 747 QYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMV 806
                     L+P+PHHNQ+PRNTYQCAMGKQAMG + +NQ NR+DTL+Y L Y QRP++
Sbjct: 680 ----------LIPFPHHNQSPRNTYQCAMGKQAMGNVAFNQLNRMDTLLYLLCYPQRPLL 729

Query: 807 ESKTIRITNFHKLPAGK 823
            +KTI +  F +L AG+
Sbjct: 730 TTKTIELVGFDRLGAGQ 746



 Score = 93.6 bits (231), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 48/89 (53%), Positives = 67/89 (75%)

Query: 445 FQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDY 504
           F    ++ VD+ARD L++  + H+PV+   ++ K  Y+AVM+RRM+ A  DP  +DDRDY
Sbjct: 307 FTRRTRSRVDEARDILANVVLCHVPVVQFDYQQKVTYIAVMVRRMLYAKLDPSFIDDRDY 366

Query: 505 YGNKRLELAGSLLSLMFEDVFKRFNSELK 533
           YGNKRLELAG LL+L+FED+FKR N++LK
Sbjct: 367 YGNKRLELAGGLLALLFEDLFKRMNADLK 395



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/146 (38%), Positives = 83/146 (56%), Gaps = 29/146 (19%)

Query: 274 EACGLVKNLALMTHITTEND--EKNMLKIMYNIGIEHIAMFNGEELSSPGVYLVFVNGIL 331
           +A GL++      H+++ N     ++LKI+   G E +        + P  YL + N I 
Sbjct: 21  QAKGLIRQ-----HVSSFNHFIASDLLKIIKAKGNERVTCD-----ADPNFYLRYTN-IY 69

Query: 332 AGITCHHKEVCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSD-- 389
            G         +P +EE +  T + TP++CRLRD TYSAPI+VD+EYTRG + V+R    
Sbjct: 70  VG---------RPSLEEDYIQT-ELTPNQCRLRDQTYSAPISVDVEYTRGKEVVIRKGKS 119

Query: 390 ----LVIGRMPIMLQSSKCVLRNKTE 411
               ++IGRMPIML+S +CVL  K+E
Sbjct: 120 GAGAILIGRMPIMLRSDRCVLTGKSE 145



 Score = 60.8 bits (146), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 46/67 (68%), Gaps = 2/67 (2%)

Query: 108 DSPEIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANAN--IYSDVDPLFYLK 165
           D+  +  K+ L+ +FL+ KGL++ H+ SF++FI  ++ K+++A  N  +  D DP FYL+
Sbjct: 5   DAGLVNQKYALLPAFLQAKGLIRQHVSSFNHFIASDLLKIIKAKGNERVTCDADPNFYLR 64

Query: 166 YLDIHVG 172
           Y +I+VG
Sbjct: 65  YTNIYVG 71


>gi|171689286|ref|XP_001909583.1| hypothetical protein [Podospora anserina S mat+]
 gi|170944605|emb|CAP70716.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1160

 Score =  316 bits (809), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 148/264 (56%), Positives = 192/264 (72%), Gaps = 4/264 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+P+PHHNQ+PRNTYQCAMGKQA+G I YNQQNRIDTL Y LVY QRPMV +KTI++ +
Sbjct: 694  GLIPFPHHNQSPRNTYQCAMGKQAIGFIAYNQQNRIDTLHYTLVYPQRPMVITKTIQLIH 753

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+ VMSYSGYDIEDAL++NKAS DRGFGRC V++     L QYPN+  DR
Sbjct: 754  YDKLPAGQNATVVVMSYSGYDIEDALVLNKASCDRGFGRCQVFKKYTTELLQYPNRNKDR 813

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPE 1089
             LG +   +  K   RH  LD DG+  PG ++ +  +++ K  P    S          E
Sbjct: 814  -LGGVQRDEDGKAKDRHAVLDNDGLATPGMKMKDGDIMIMKETPVDQTSTNIGEDRKITE 872

Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
            ++  P+SYK   P+ ++KV++++      L+K+  RQTRRPE+GDKFSSRHGQKGV+G+I
Sbjct: 873  FRPCPISYKIKDPAIVDKVVITTKESGTPLLKVRTRQTRRPELGDKFSSRHGQKGVVGII 932

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
            V+QED+PF++ G+ PDIIMNPHG 
Sbjct: 933  VDQEDLPFSDKGLTPDIIMNPHGF 956



 Score =  244 bits (622), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 115/201 (57%), Positives = 155/201 (77%), Gaps = 3/201 (1%)

Query: 1175 GCDR-ITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
            G DR ITE++  P+SYK   P+ ++KV++++      L+K+  RQTRRPE+GDKFSSRHG
Sbjct: 865  GEDRKITEFRPCPISYKIKDPAIVDKVVITTKESGTPLLKVRTRQTRRPELGDKFSSRHG 924

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEG--NYKE 1291
            QKGV+G+IV+QED+PF++ G+ PDIIMNPHG+PSRMTVGKL E L GKA ++ G   Y  
Sbjct: 925  QKGVVGIIVDQEDLPFSDKGLTPDIIMNPHGFPSRMTVGKLFECLTGKASVVAGRREYGF 984

Query: 1292 GTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKI 1351
            G AF    + ++ + LI HG++++GKD F SGITGE  EAY+++GP++YQ+LKHMV DK+
Sbjct: 985  GDAFRSHPVEEMGKVLIEHGFSWEGKDYFTSGITGEPHEAYLFNGPIFYQRLKHMVADKM 1044

Query: 1352 HARSRGPRVVLTRQPTGRRWK 1372
            H+RSRGPR VLTRQPT  R +
Sbjct: 1045 HSRSRGPRAVLTRQPTEGRSR 1065



 Score =  180 bits (456), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 89/141 (63%), Positives = 105/141 (74%), Gaps = 2/141 (1%)

Query: 197 ITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVSGPRS 256
           IT  L  AIQ+GNWT++RF M R GVT VLSRLSYI+ LGMMTRI+SQFEKTRKVSGPR+
Sbjct: 433 ITQGLNRAIQSGNWTVKRFGMNRAGVTHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRA 492

Query: 257 LQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNI--GIEHIAMFNG 314
           LQ SQWGMLC SDTPEGEACGLVKNLALMTHITTE  E+ + K +  +  GI  I   +G
Sbjct: 493 LQPSQWGMLCTSDTPEGEACGLVKNLALMTHITTEAGEEKVKKCVSTLIEGIRLIEECSG 552

Query: 315 EELSSPGVYLVFVNGILAGIT 335
            E+     +++ VNG    +T
Sbjct: 553 TEMHEENAFIIHVNGTPYALT 573



 Score =  164 bits (416), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 82/132 (62%), Positives = 97/132 (73%), Gaps = 15/132 (11%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKR 751
           F+DFL +G +EYLDVNE ND+ IAV ES I    TTHLEI PFT+LG  AG         
Sbjct: 645 FEDFLKKGVLEYLDVNEENDALIAVHESDINDQ-TTHLEIEPFTILGAVAG--------- 694

Query: 752 FHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTI 811
                L+P+PHHNQ+PRNTYQCAMGKQA+G I YNQQNRIDTL Y LVY QRPMV +KTI
Sbjct: 695 -----LIPFPHHNQSPRNTYQCAMGKQAIGFIAYNQQNRIDTLHYTLVYPQRPMVITKTI 749

Query: 812 RITNFHKLPAGK 823
           ++ ++ KLPAG+
Sbjct: 750 QLIHYDKLPAGQ 761



 Score = 76.6 bits (187), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 40/85 (47%), Positives = 66/85 (77%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           ++ P+++  D LS+  +AH+ V ++ F  K +Y+A+M+RR+++A+ +P+++DDRD+ GNK
Sbjct: 320 RRNPIEEGLDALSNLIVAHVTVKDLDFYPKTIYIAMMVRRILMAVHNPELVDDRDFVGNK 379

Query: 509 RLELAGSLLSLMFEDVFKRFNSELK 533
           RLELAG LLSL+FED+ K F  +LK
Sbjct: 380 RLELAGQLLSLLFEDLLKGFIGQLK 404



 Score = 70.1 bits (170), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 31/60 (51%), Positives = 47/60 (78%)

Query: 113 RDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           +DK++L+ +FLK KGLVK HIDS++YF+  +IKK+++AN  I  D +P F+L++ DI VG
Sbjct: 31  QDKYQLLPAFLKVKGLVKQHIDSYNYFVEEDIKKIVEANRVIRCDQEPSFWLEFTDIRVG 90



 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 44/70 (62%), Gaps = 4/70 (5%)

Query: 341 VCKPEIEESFNYTRQTT----PHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMP 396
           V KP   E+     Q++    P ECRLRD TY+AP+ VDI Y +   R +R ++ + R+P
Sbjct: 89  VGKPTRNENSQLQWQSSTTVSPMECRLRDATYAAPVVVDIAYPKNGVRNIRKNVQLCRIP 148

Query: 397 IMLQSSKCVL 406
           +ML+SSKC L
Sbjct: 149 VMLKSSKCYL 158


>gi|315048479|ref|XP_003173614.1| DNA-directed RNA polymerase III subunit RPC2 [Arthroderma gypseum CBS
            118893]
 gi|311341581|gb|EFR00784.1| DNA-directed RNA polymerase III subunit RPC2 [Arthroderma gypseum CBS
            118893]
          Length = 1210

 Score =  315 bits (808), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 148/266 (55%), Positives = 194/266 (72%), Gaps = 7/266 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I  NQ  RID+L+Y +VY Q+PMV+++TI +TN
Sbjct: 743  GLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYAMVYPQKPMVKTRTIELTN 802

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNA +AVMSYSGYDIEDAL++NK S+DRGFGRC V+R     LK Y N T DR
Sbjct: 803  YDKLPAGQNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYSANLKSYSNGTKDR 862

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATP---- 1088
            ++GP  E      + +H  LD DG+ A GE++   +V +NK  P  ++S+    +     
Sbjct: 863  LVGPTRENGV--SIRKHGLLDNDGLAAVGEKVSPGEVYINKETPDNALSSGITGSDAGLP 920

Query: 1089 -EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
             +Y   P +YK    SY++KV++S+   ++ LIK+  RQTRRPE+GDKFSSRHGQKGV+G
Sbjct: 921  VKYNPTPQTYKLPDYSYIDKVMISTTEGESQLIKVQTRQTRRPEVGDKFSSRHGQKGVVG 980

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            +I EQ DMPF ++G+ PDIIMNPHG 
Sbjct: 981  IIAEQADMPFTDTGLVPDIIMNPHGF 1006



 Score =  254 bits (648), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 116/203 (57%), Positives = 155/203 (76%), Gaps = 2/203 (0%)

Query: 1172 GLKGCDR--ITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFS 1229
            G+ G D     +Y   P +YK    SY++KV++S+   ++ LIK+  RQTRRPE+GDKFS
Sbjct: 911  GITGSDAGLPVKYNPTPQTYKLPDYSYIDKVMISTTEGESQLIKVQTRQTRRPEVGDKFS 970

Query: 1230 SRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNY 1289
            SRHGQKGV+G+I EQ DMPF ++G+ PDIIMNPHG+PSRMTVGK++EL+AGKAG++ G +
Sbjct: 971  SRHGQKGVVGIIAEQADMPFTDTGLVPDIIMNPHGFPSRMTVGKMLELVAGKAGIVSGQF 1030

Query: 1290 KEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQD 1349
              GT FGG+ + ++   L+ HG++Y GKD   SGITGE L  Y+++GP+YYQKLKHMVQD
Sbjct: 1031 GYGTPFGGSPVEEMSAILVNHGFSYGGKDYLTSGITGEPLTYYVFTGPIYYQKLKHMVQD 1090

Query: 1350 KIHARSRGPRVVLTRQPTGRRWK 1372
            K+H+R+RGPR  LTRQPT  R +
Sbjct: 1091 KMHSRARGPRATLTRQPTEGRSR 1113



 Score =  198 bits (504), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 106/200 (53%), Positives = 137/200 (68%), Gaps = 7/200 (3%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPK-IKAAQFDI--V 189
           +D  DY  N  ++   Q  A ++ D   LF     DI + I DK++ K ++   FD   V
Sbjct: 421 VDDRDYVGNKRLELAGQLLALLFED---LFKKFCFDIKMNI-DKVLKKPVRTEAFDAYPV 476

Query: 190 NHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
             +  + IT  +  AI TGNW+++RF+MER GVT VLSRLSYI+ LGMMTRI+SQFEKTR
Sbjct: 477 VAIHGNHITQGMNRAIATGNWSLKRFRMERAGVTHVLSRLSYIAALGMMTRISSQFEKTR 536

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHI 309
           KVSGPR+LQ SQ+GMLC SDTPEGEACGLVKNLALMTHITT ++E+ + K+++ +G E I
Sbjct: 537 KVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTNDEEEPVQKLVFTLGAEDI 596

Query: 310 AMFNGEELSSPGVYLVFVNG 329
               G E    G Y+VF+NG
Sbjct: 597 QTVGGRECFGQGAYIVFMNG 616



 Score =  159 bits (401), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 78/136 (57%), Positives = 96/136 (70%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G   FDDFL  G +EY+DVNE ND++IAV E  I    TTHLEI PFT+LG  AG     
Sbjct: 690 GTMDFDDFLSHGLVEYVDVNEENDANIAVYEREIDAN-TTHLEIEPFTVLGAVAG----- 743

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQA+G I  NQ  RID+L+Y +VY Q+PMV+
Sbjct: 744 ---------LIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYAMVYPQKPMVK 794

Query: 808 SKTIRITNFHKLPAGK 823
           ++TI +TN+ KLPAG+
Sbjct: 795 TRTIELTNYDKLPAGQ 810



 Score = 93.2 bits (230), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/89 (48%), Positives = 65/89 (73%)

Query: 445 FQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDY 504
           F   ++  V +A + +SS  I+H+ V +M F+ KA+Y+  M RR+++A  DP ++DDRDY
Sbjct: 367 FGPARRNYVAEAIEAISSVIISHVQVQDMNFRPKALYVTHMARRVLMAKLDPSLVDDRDY 426

Query: 505 YGNKRLELAGSLLSLMFEDVFKRFNSELK 533
            GNKRLELAG LL+L+FED+FK+F  ++K
Sbjct: 427 VGNKRLELAGQLLALLFEDLFKKFCFDIK 455



 Score = 86.7 bits (213), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 38/54 (70%), Positives = 45/54 (83%)

Query: 357 TPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
           TP+ECRLRD+TY+API VD EY RG QRV R+   IGRMP+ML+SSKCVL NK+
Sbjct: 163 TPNECRLRDMTYAAPILVDFEYVRGRQRVKRNGTAIGRMPVMLRSSKCVLSNKS 216



 Score = 85.1 bits (209), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 35/60 (58%), Positives = 51/60 (85%)

Query: 113 RDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           RDKW L+ +FLK KGLVK HIDS++YF+ V++KK++Q++A I SD+DP FY+K+ DI++G
Sbjct: 85  RDKWNLLPAFLKVKGLVKQHIDSYNYFVEVQLKKIVQSSAEIRSDIDPKFYIKFHDIYLG 144


>gi|302657001|ref|XP_003020234.1| hypothetical protein TRV_05698 [Trichophyton verrucosum HKI 0517]
 gi|291184045|gb|EFE39616.1| hypothetical protein TRV_05698 [Trichophyton verrucosum HKI 0517]
          Length = 1196

 Score =  315 bits (808), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 148/266 (55%), Positives = 194/266 (72%), Gaps = 7/266 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I  NQ  RID+L+Y +VY Q+PMV+++TI +TN
Sbjct: 729  GLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYAMVYPQKPMVKTRTIELTN 788

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNA +AVMSYSGYDIEDAL++NK S+DRGFGRC V+R     LK Y N T DR
Sbjct: 789  YDKLPAGQNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYSANLKSYSNGTKDR 848

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATP---- 1088
            ++GP  E      + +H  LD DG+ A GE++   +V +NK  P  ++S+    +     
Sbjct: 849  LVGPTRENGV--SIRKHGLLDNDGLAAVGEKVSPGEVYINKETPDNALSSGITGSDAGLP 906

Query: 1089 -EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
             +Y   P +YK    SY++KV++S+   ++ LIK+  RQTRRPE+GDKFSSRHGQKGV+G
Sbjct: 907  VKYNPTPQTYKLPDYSYIDKVMISTTEGESQLIKVQTRQTRRPEVGDKFSSRHGQKGVVG 966

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            +I EQ DMPF ++G+ PDIIMNPHG 
Sbjct: 967  IIAEQADMPFTDTGLVPDIIMNPHGF 992



 Score =  253 bits (647), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 116/203 (57%), Positives = 155/203 (76%), Gaps = 2/203 (0%)

Query: 1172 GLKGCDR--ITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFS 1229
            G+ G D     +Y   P +YK    SY++KV++S+   ++ LIK+  RQTRRPE+GDKFS
Sbjct: 897  GITGSDAGLPVKYNPTPQTYKLPDYSYIDKVMISTTEGESQLIKVQTRQTRRPEVGDKFS 956

Query: 1230 SRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNY 1289
            SRHGQKGV+G+I EQ DMPF ++G+ PDIIMNPHG+PSRMTVGK++EL+AGKAG++ G +
Sbjct: 957  SRHGQKGVVGIIAEQADMPFTDTGLVPDIIMNPHGFPSRMTVGKMLELVAGKAGIISGQF 1016

Query: 1290 KEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQD 1349
              GT FGG+ + ++   L+ HG++Y GKD   SGITGE L  Y+++GP+YYQKLKHMVQD
Sbjct: 1017 GYGTPFGGSPVEEMSAILVDHGFSYGGKDYLTSGITGEPLTYYVFTGPIYYQKLKHMVQD 1076

Query: 1350 KIHARSRGPRVVLTRQPTGRRWK 1372
            K+H+R+RGPR  LTRQPT  R +
Sbjct: 1077 KMHSRARGPRATLTRQPTEGRSR 1099



 Score =  199 bits (505), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 106/200 (53%), Positives = 137/200 (68%), Gaps = 7/200 (3%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPK-IKAAQFDI--V 189
           +D  DY  N  ++   Q  A ++ D   LF     DI + I DK++ K ++   FD   V
Sbjct: 407 VDDRDYVGNKRLELAGQLLALLFED---LFKKFCFDIKMNI-DKVLKKPVRTEAFDAYPV 462

Query: 190 NHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
             +  + IT  +  AI TGNW+++RF+MER GVT VLSRLSYI+ LGMMTRI+SQFEKTR
Sbjct: 463 VAIHGNHITQGMNRAIATGNWSLKRFRMERAGVTHVLSRLSYIAALGMMTRISSQFEKTR 522

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHI 309
           KVSGPR+LQ SQ+GMLC SDTPEGEACGLVKNLALMTHITT ++E+ + K+++ +G E I
Sbjct: 523 KVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTNDEEEPVQKLVFTLGAEDI 582

Query: 310 AMFNGEELSSPGVYLVFVNG 329
               G E    G Y+VF+NG
Sbjct: 583 QTVGGRECFGQGAYIVFMNG 602



 Score =  159 bits (401), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 78/136 (57%), Positives = 96/136 (70%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G   FDDFL  G +EY+DVNE ND++IAV E  I    TTHLEI PFT+LG  AG     
Sbjct: 676 GTMDFDDFLSNGLVEYVDVNEENDANIAVYEREIDAN-TTHLEIEPFTVLGAVAG----- 729

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQA+G I  NQ  RID+L+Y +VY Q+PMV+
Sbjct: 730 ---------LIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYAMVYPQKPMVK 780

Query: 808 SKTIRITNFHKLPAGK 823
           ++TI +TN+ KLPAG+
Sbjct: 781 TRTIELTNYDKLPAGQ 796



 Score = 92.8 bits (229), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/89 (48%), Positives = 65/89 (73%)

Query: 445 FQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDY 504
           F   ++  V +A + +SS  I+H+ V +M F+ KA+Y+  M RR+++A  DP ++DDRDY
Sbjct: 353 FGPARRNYVAEAIEAISSVIISHVQVQDMNFRPKALYVTHMARRVLMAKLDPSLVDDRDY 412

Query: 505 YGNKRLELAGSLLSLMFEDVFKRFNSELK 533
            GNKRLELAG LL+L+FED+FK+F  ++K
Sbjct: 413 VGNKRLELAGQLLALLFEDLFKKFCFDIK 441



 Score = 86.7 bits (213), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/54 (70%), Positives = 45/54 (83%)

Query: 357 TPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
           TP+ECRLRD+TY+API VD EY RG QRV R+   IGRMP+ML+SSKCVL NK+
Sbjct: 149 TPNECRLRDMTYAAPILVDFEYVRGRQRVKRNGTAIGRMPVMLRSSKCVLSNKS 202



 Score = 85.1 bits (209), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 35/60 (58%), Positives = 51/60 (85%)

Query: 113 RDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           RDKW L+ +FLK KGLVK HIDS++YF+ V++KK++Q++A I SD+DP FY+K+ DI++G
Sbjct: 71  RDKWNLLPAFLKVKGLVKQHIDSYNYFVEVQLKKIVQSSAEIRSDIDPKFYIKFHDIYLG 130


>gi|302505599|ref|XP_003014506.1| hypothetical protein ARB_07068 [Arthroderma benhamiae CBS 112371]
 gi|291178327|gb|EFE34117.1| hypothetical protein ARB_07068 [Arthroderma benhamiae CBS 112371]
          Length = 1196

 Score =  315 bits (808), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 148/266 (55%), Positives = 194/266 (72%), Gaps = 7/266 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I  NQ  RID+L+Y +VY Q+PMV+++TI +TN
Sbjct: 729  GLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYAMVYPQKPMVKTRTIELTN 788

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNA +AVMSYSGYDIEDAL++NK S+DRGFGRC V+R     LK Y N T DR
Sbjct: 789  YDKLPAGQNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYSANLKSYSNGTKDR 848

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATP---- 1088
            ++GP  E      + +H  LD DG+ A GE++   +V +NK  P  ++S+    +     
Sbjct: 849  LVGPTRENGV--SIRKHGLLDNDGLAAVGEKVSPGEVYINKETPDNALSSGITGSDAGLP 906

Query: 1089 -EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
             +Y   P +YK    SY++KV++S+   ++ LIK+  RQTRRPE+GDKFSSRHGQKGV+G
Sbjct: 907  VKYNPTPQTYKLPDYSYIDKVMISTTEGESQLIKVQTRQTRRPEVGDKFSSRHGQKGVVG 966

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            +I EQ DMPF ++G+ PDIIMNPHG 
Sbjct: 967  IIAEQADMPFTDTGLVPDIIMNPHGF 992



 Score =  253 bits (647), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 116/203 (57%), Positives = 155/203 (76%), Gaps = 2/203 (0%)

Query: 1172 GLKGCDR--ITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFS 1229
            G+ G D     +Y   P +YK    SY++KV++S+   ++ LIK+  RQTRRPE+GDKFS
Sbjct: 897  GITGSDAGLPVKYNPTPQTYKLPDYSYIDKVMISTTEGESQLIKVQTRQTRRPEVGDKFS 956

Query: 1230 SRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNY 1289
            SRHGQKGV+G+I EQ DMPF ++G+ PDIIMNPHG+PSRMTVGK++EL+AGKAG++ G +
Sbjct: 957  SRHGQKGVVGIIAEQADMPFTDTGLVPDIIMNPHGFPSRMTVGKMLELVAGKAGIISGQF 1016

Query: 1290 KEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQD 1349
              GT FGG+ + ++   L+ HG++Y GKD   SGITGE L  Y+++GP+YYQKLKHMVQD
Sbjct: 1017 GYGTPFGGSPVEEMSAILVDHGFSYGGKDYLTSGITGEPLTYYVFTGPIYYQKLKHMVQD 1076

Query: 1350 KIHARSRGPRVVLTRQPTGRRWK 1372
            K+H+R+RGPR  LTRQPT  R +
Sbjct: 1077 KMHSRARGPRATLTRQPTEGRSR 1099



 Score =  198 bits (504), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 106/200 (53%), Positives = 137/200 (68%), Gaps = 7/200 (3%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPK-IKAAQFDI--V 189
           +D  DY  N  ++   Q  A ++ D   LF     DI + I DK++ K ++   FD   V
Sbjct: 407 VDDRDYVGNKRLELAGQLLALLFED---LFKKFCFDIKMNI-DKVLKKPVRTEAFDAYPV 462

Query: 190 NHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
             +  + IT  +  AI TGNW+++RF+MER GVT VLSRLSYI+ LGMMTRI+SQFEKTR
Sbjct: 463 VAIHGNHITQGMNRAIATGNWSLKRFRMERAGVTHVLSRLSYIAALGMMTRISSQFEKTR 522

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHI 309
           KVSGPR+LQ SQ+GMLC SDTPEGEACGLVKNLALMTHITT ++E+ + K+++ +G E I
Sbjct: 523 KVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTNDEEEPVQKLVFTLGAEDI 582

Query: 310 AMFNGEELSSPGVYLVFVNG 329
               G E    G Y+VF+NG
Sbjct: 583 QTVGGRECFGQGAYIVFMNG 602



 Score =  159 bits (401), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 78/136 (57%), Positives = 96/136 (70%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G   FDDFL  G +EY+DVNE ND++IAV E  I    TTHLEI PFT+LG  AG     
Sbjct: 676 GTMDFDDFLSNGLVEYVDVNEENDANIAVYEREIDAN-TTHLEIEPFTVLGAVAG----- 729

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQA+G I  NQ  RID+L+Y +VY Q+PMV+
Sbjct: 730 ---------LIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYAMVYPQKPMVK 780

Query: 808 SKTIRITNFHKLPAGK 823
           ++TI +TN+ KLPAG+
Sbjct: 781 TRTIELTNYDKLPAGQ 796



 Score = 92.8 bits (229), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/89 (48%), Positives = 65/89 (73%)

Query: 445 FQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDY 504
           F   ++  V +A + +SS  I+H+ V +M F+ KA+Y+  M RR+++A  DP ++DDRDY
Sbjct: 353 FGPARRNYVAEAIEAISSVIISHVQVQDMNFRPKALYVTHMARRVLMAKLDPSLVDDRDY 412

Query: 505 YGNKRLELAGSLLSLMFEDVFKRFNSELK 533
            GNKRLELAG LL+L+FED+FK+F  ++K
Sbjct: 413 VGNKRLELAGQLLALLFEDLFKKFCFDIK 441



 Score = 86.7 bits (213), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/54 (70%), Positives = 45/54 (83%)

Query: 357 TPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
           TP+ECRLRD+TY+API VD EY RG QRV R+   IGRMP+ML+SSKCVL NK+
Sbjct: 149 TPNECRLRDMTYAAPILVDFEYVRGRQRVKRNGTAIGRMPVMLRSSKCVLSNKS 202



 Score = 85.1 bits (209), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 35/60 (58%), Positives = 51/60 (85%)

Query: 113 RDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           RDKW L+ +FLK KGLVK HIDS++YF+ V++KK++Q++A I SD+DP FY+K+ DI++G
Sbjct: 71  RDKWNLLPAFLKVKGLVKQHIDSYNYFVEVQLKKIVQSSAEIRSDIDPKFYIKFHDIYLG 130


>gi|343427664|emb|CBQ71191.1| probable DNA-directed RNA polymerase III, 130 KD subunit [Sporisorium
            reilianum SRZ2]
          Length = 1170

 Score =  315 bits (808), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 152/271 (56%), Positives = 193/271 (71%), Gaps = 10/271 (3%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTY CAM KQA G IG+NQ  RIDTL+Y ++Y Q+PMV+S+T+ +  
Sbjct: 702  GLIPYPHHNQSPRNTYHCAMAKQAQGFIGHNQLVRIDTLLYLMLYPQQPMVKSRTVELVG 761

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLP G NA +AVMS+SGYDIEDAL++NKASLDRGFGR    + S  V+++YPN THDR
Sbjct: 762  YDKLPGGTNAMLAVMSFSGYDIEDALVLNKASLDRGFGRSQTMKKSSTVIRKYPNGTHDR 821

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPT----ISVSAI----- 1083
            +    ++  T K   R+  L+ DGI   GE++ +  V VNK  P      S +AI     
Sbjct: 822  LADAPVDDSTGKRQKRYDILEADGIAGVGERVEQGDVYVNKQTPVNANDNSSAAIMIGAS 881

Query: 1084 -SMATPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQ 1142
             + A+  YK  P+SYK  V  Y+++VL++    D  LIK L+RQTRRPE+GDKFSSRHGQ
Sbjct: 882  NAAASVAYKSAPLSYKPPVSGYVDQVLITDTDSDQTLIKALIRQTRRPELGDKFSSRHGQ 941

Query: 1143 KGVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            KGVIGLIV+QEDMPF + GI PDIIMNPHG 
Sbjct: 942  KGVIGLIVQQEDMPFTDEGINPDIIMNPHGF 972



 Score =  280 bits (716), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 137/233 (58%), Positives = 168/233 (72%), Gaps = 8/233 (3%)

Query: 1146 IGLIVEQEDM------PFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEK 1199
            +G  VEQ D+      P N +      IM   G         YK  P+SYK  V  Y+++
Sbjct: 849  VGERVEQGDVYVNKQTPVNANDNSSAAIMI--GASNAAASVAYKSAPLSYKPPVSGYVDQ 906

Query: 1200 VLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDII 1259
            VL++    D  LIK L+RQTRRPE+GDKFSSRHGQKGVIGLIV+QEDMPF + GI PDII
Sbjct: 907  VLITDTDSDQTLIKALIRQTRRPELGDKFSSRHGQKGVIGLIVQQEDMPFTDEGINPDII 966

Query: 1260 MNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDI 1319
            MNPHG+PSRMTVGK+IELL+GKAG++ G  + GTAFGG+K+ D+   L+ HGYNY GK+ 
Sbjct: 967  MNPHGFPSRMTVGKMIELLSGKAGVVTGTLQYGTAFGGSKVDDMSALLVEHGYNYAGKET 1026

Query: 1320 FYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
              SGITG+ LE Y+Y GP+YYQ+LKHMVQDK+HAR+RGPR VLTRQPT  R +
Sbjct: 1027 LTSGITGQPLECYVYFGPIYYQRLKHMVQDKMHARARGPRAVLTRQPTEGRSR 1079



 Score =  212 bits (540), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 109/206 (52%), Positives = 142/206 (68%), Gaps = 7/206 (3%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKI-KAAQFDIVN- 190
           +D  DY  N  ++   Q  A ++ D   LF     D+ + I DK++ K  +  +FD  N 
Sbjct: 377 VDDRDYVGNKRLELAGQLLALLFED---LFKKFNSDLKINI-DKVLKKPNRTVEFDAFNQ 432

Query: 191 -HMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
            H   D IT     AI TGNW+++RFKMER G+T VLSRLS+I+ LGMMTRI+SQFEKTR
Sbjct: 433 FHFNGDYITAGFVRAISTGNWSLKRFKMERAGITHVLSRLSFIAALGMMTRISSQFEKTR 492

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHI 309
           KVSGPR+LQ SQWGMLCPSDTPEGEACGLVKNLAL THITT+ +E+ + +I + +G+E I
Sbjct: 493 KVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALTTHITTDVEEEPIARIAFTLGVEDI 552

Query: 310 AMFNGEELSSPGVYLVFVNGILAGIT 335
            +  G EL  P  Y+V++NG + G+T
Sbjct: 553 HLLTGAELYRPDSYVVYLNGNVLGVT 578



 Score =  168 bits (425), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 83/149 (55%), Positives = 102/149 (68%), Gaps = 15/149 (10%)

Query: 675 QPRPTFLNMHQF-LGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAP 733
           QPR T  +M Q   G +RFDDFL  G IEY+DVNE ND++IA+ E  I+P  TTHLEI P
Sbjct: 634 QPRVTESHMRQLKSGARRFDDFLSNGLIEYVDVNEENDANIAMYEREIKPQYTTHLEIEP 693

Query: 734 FTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDT 793
           FTLLG  AG              L+PYPHHNQ+PRNTY CAM KQA G IG+NQ  RIDT
Sbjct: 694 FTLLGAVAG--------------LIPYPHHNQSPRNTYHCAMAKQAQGFIGHNQLVRIDT 739

Query: 794 LMYNLVYAQRPMVESKTIRITNFHKLPAG 822
           L+Y ++Y Q+PMV+S+T+ +  + KLP G
Sbjct: 740 LLYLMLYPQQPMVKSRTVELVGYDKLPGG 768



 Score =  103 bits (256), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 44/81 (54%), Positives = 65/81 (80%)

Query: 453 VDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLEL 512
            ++A D L++  +AH+PV  + F+ KA+Y+A M+RR+++A+ D   +DDRDY GNKRLEL
Sbjct: 331 AEEALDVLATVIMAHVPVERLNFRPKAIYIASMVRRVLMAMQDEKKVDDRDYVGNKRLEL 390

Query: 513 AGSLLSLMFEDVFKRFNSELK 533
           AG LL+L+FED+FK+FNS+LK
Sbjct: 391 AGQLLALLFEDLFKKFNSDLK 411



 Score = 84.0 bits (206), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 39/71 (54%), Positives = 52/71 (73%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQ 400
           V +P   +     R  TPHECRLRD+TYSA I V+IEYTRG + + R ++ IGR+P+ML+
Sbjct: 106 VGEPRRYDGDALQRPITPHECRLRDITYSAHIFVNIEYTRGGKIIRRKNVAIGRIPVMLR 165

Query: 401 SSKCVLRNKTE 411
           S+KCVL NK+E
Sbjct: 166 SNKCVLANKSE 176



 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/61 (57%), Positives = 49/61 (80%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           + DKW+LV +FL+ KGLVK HIDS++YF++ ++K +++AN  I SD+DP FYLKY DI V
Sbjct: 47  VEDKWELVPAFLQVKGLVKQHIDSYNYFVDHDLKNIIKANEKITSDIDPKFYLKYTDITV 106

Query: 172 G 172
           G
Sbjct: 107 G 107


>gi|401889092|gb|EJT53032.1| DNA-directed RNA polymerase [Trichosporon asahii var. asahii CBS
            2479]
          Length = 1213

 Score =  315 bits (808), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 151/261 (57%), Positives = 190/261 (72%), Gaps = 6/261 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ NRIDTL+Y + Y Q+PMV++KTI +  
Sbjct: 761  GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLNRIDTLLYLMTYPQQPMVKTKTIELVG 820

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + +LPAGQNAT+AVMSYSGYDIEDALI+N+AS DRGFGRC V +     ++ +PN T +R
Sbjct: 821  YDRLPAGQNATVAVMSYSGYDIEDALIVNRASADRGFGRCHVLKKQTIPIRSFPNGTSER 880

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKE 1092
            +   +L  D R     H  LDQDG+VAPG  + +  VL  +  P  +       T  +K 
Sbjct: 881  L--AMLPPDQRPET--HSWLDQDGLVAPGSVVSQGDVLAARETPMDTRGP--GPTVGFKA 934

Query: 1093 VPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQ 1152
             PV++K   P+ ++KV+V+   +   LIK+L RQTRRPE+GDKFSSRHGQKGV GLIV Q
Sbjct: 935  TPVAHKLPEPTNIDKVMVTDTEDGNQLIKILTRQTRRPELGDKFSSRHGQKGVCGLIVPQ 994

Query: 1153 EDMPFNESGICPDIIMNPHGL 1173
            +DMPFN+ GICPDIIMNPHG 
Sbjct: 995  QDMPFNDQGICPDIIMNPHGF 1015



 Score =  271 bits (692), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 128/204 (62%), Positives = 156/204 (76%)

Query: 1169 NPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKF 1228
             P   +G      +K  PV++K   P+ ++KV+V+   +   LIK+L RQTRRPE+GDKF
Sbjct: 919  TPMDTRGPGPTVGFKATPVAHKLPEPTNIDKVMVTDTEDGNQLIKILTRQTRRPELGDKF 978

Query: 1229 SSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGN 1288
            SSRHGQKGV GLIV Q+DMPFN+ GICPDIIMNPHG+PSRMTVGK+IELL+GKAGLM G 
Sbjct: 979  SSRHGQKGVCGLIVPQQDMPFNDQGICPDIIMNPHGFPSRMTVGKMIELLSGKAGLMAGK 1038

Query: 1289 YKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQ 1348
             + GTAFGG+K+VD+ + LI  G++Y GKD   SGITGE+LE Y+Y GP+YYQKLKHMV 
Sbjct: 1039 LQYGTAFGGSKVVDMSQILIDAGFSYAGKDTLTSGITGESLETYVYFGPIYYQKLKHMVM 1098

Query: 1349 DKIHARSRGPRVVLTRQPTGRRWK 1372
            DK+HAR  GPR  LTRQPT  R K
Sbjct: 1099 DKMHARPTGPRANLTRQPTEGRSK 1122



 Score =  203 bits (516), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 102/166 (61%), Positives = 124/166 (74%), Gaps = 4/166 (2%)

Query: 175 DKIIPK-IKAAQFDIVNHMRQ---DTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLS 230
           DKI+ K  +A  FD    +R    D IT+A   +I TGNW+++RF +ER GVT VLSRLS
Sbjct: 476 DKILEKKTRAGPFDASTLVRTGGGDIITSAFVRSISTGNWSLKRFHVERAGVTHVLSRLS 535

Query: 231 YISGLGMMTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITT 290
           +I+ LGMMTRI SQFEKTRKVSGPR+LQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT
Sbjct: 536 FIAALGMMTRITSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITT 595

Query: 291 ENDEKNMLKIMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAGITC 336
           +  E  ++K+ + +G E I++  G EL   GV+LV VNG L G+T 
Sbjct: 596 DVPEDPLIKLAFMLGAEDISLATGNELYRDGVHLVQVNGNLIGVTA 641



 Score =  159 bits (402), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 83/150 (55%), Positives = 98/150 (65%), Gaps = 18/150 (12%)

Query: 677 RPTFLNMHQFL---GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAP 733
           RP   + H  L   G   FD FL  G +EYLDVNE NDS IA  ES I    TTHLEI P
Sbjct: 694 RPRVTSEHMQLLKAGKVTFDHFLRSGLVEYLDVNEENDSFIACYESEITED-TTHLEIEP 752

Query: 734 FTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDT 793
           FT+LG  AG              L+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ NRIDT
Sbjct: 753 FTILGAVAG--------------LIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLNRIDT 798

Query: 794 LMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
           L+Y + Y Q+PMV++KTI +  + +LPAG+
Sbjct: 799 LLYLMTYPQQPMVKTKTIELVGYDRLPAGQ 828



 Score =  108 bits (269), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 52/100 (52%), Positives = 72/100 (72%)

Query: 435 LSCKKLRQKRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALS 494
           +S  + ++ R   +K TP D A   L++  + H+PV +M F+ KA+YLA M RR++ A+ 
Sbjct: 374 VSPTQEKEDRSLGHKLTPTDMAMQALAAMVLGHVPVRDMNFRPKAIYLATMSRRVLAAML 433

Query: 495 DPDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELKE 534
           D +M+DDRDY GNKRLELAG LLSL+FED FK FNS+LK+
Sbjct: 434 DENMVDDRDYVGNKRLELAGQLLSLLFEDSFKTFNSDLKK 473



 Score = 80.1 bits (196), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 31/61 (50%), Positives = 49/61 (80%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           ++DKW+L+ +FLK KGLVK H+DSF+YF++ +IK ++ ANA + SD +P +Y++Y DI +
Sbjct: 104 VQDKWELLPAFLKVKGLVKQHLDSFNYFVHTDIKAILHANALVVSDANPRYYIRYTDIRI 163

Query: 172 G 172
           G
Sbjct: 164 G 164



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 40/71 (56%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQ 400
           + +P  +E  +   + TP ECRL D TYS  I VDIEYT   +   +  + IG +PIML+
Sbjct: 163 IGRPLRKEVGSSNTRLTPMECRLTDNTYSGGIYVDIEYTHEDKIRKQQGIHIGSLPIMLR 222

Query: 401 SSKCVLRNKTE 411
           S  C L  K +
Sbjct: 223 SDLCHLAGKND 233


>gi|407926681|gb|EKG19645.1| DNA-directed RNA polymerase subunit 2 domain 6 [Macrophomina
            phaseolina MS6]
          Length = 1189

 Score =  315 bits (806), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 150/269 (55%), Positives = 195/269 (72%), Gaps = 9/269 (3%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ  RIDTL+Y +VY Q+PMV+++TI +  
Sbjct: 719  GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFTRIDTLLYLMVYPQQPMVKTRTIELIK 778

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+AVMSYSGYDIEDAL++NKAS DRGFGRC V++ +   LK Y N + D+
Sbjct: 779  YDKLPAGQNATVAVMSYSGYDIEDALVINKASCDRGFGRCQVFKKATTTLKSYANGSQDK 838

Query: 1033 ILGPLLEADTRKPVYRHRAL-DQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT---- 1087
            I GP   AD      RH+ + + DGI   G  + +  V +NK +P +  + + +      
Sbjct: 839  ITGPERNADGTPVNPRHKKVGESDGIAEVGMLLEKDDVYLNKFVP-VQTNPVGLEEQQRR 897

Query: 1088 ---PEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKG 1144
                E++  P+SYK   P+Y++KVL++ N  +  +IK+  RQTRRPE+GDKFSSRHGQKG
Sbjct: 898  KQPTEFRPTPMSYKLPDPAYVDKVLLTENESNTPVIKIQTRQTRRPELGDKFSSRHGQKG 957

Query: 1145 VIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            V+G+I EQ DMPFN+ GICPDIIMNPHG 
Sbjct: 958  VVGIIAEQIDMPFNDQGICPDIIMNPHGF 986



 Score =  278 bits (711), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 131/230 (56%), Positives = 177/230 (76%), Gaps = 6/230 (2%)

Query: 1146 IGLIVEQEDMPFNESGICPDIIMNPHGLKGCDR---ITEYKEVPVSYKGSVPSYLEKVLV 1202
            +G+++E++D+  N+    P +  NP GL+   R    TE++  P+SYK   P+Y++KVL+
Sbjct: 867  VGMLLEKDDVYLNK--FVP-VQTNPVGLEEQQRRKQPTEFRPTPMSYKLPDPAYVDKVLL 923

Query: 1203 SSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNP 1262
            + N  +  +IK+  RQTRRPE+GDKFSSRHGQKGV+G+I EQ DMPFN+ GICPDIIMNP
Sbjct: 924  TENESNTPVIKIQTRQTRRPELGDKFSSRHGQKGVVGIIAEQIDMPFNDQGICPDIIMNP 983

Query: 1263 HGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYS 1322
            HG+PSRMTVGK++ELL+GKAG+M G  + GT FGG+K  D+ + L+  G++Y GKD+  S
Sbjct: 984  HGFPSRMTVGKMLELLSGKAGVMNGELQYGTCFGGSKAEDMSQILLEAGFSYSGKDMLTS 1043

Query: 1323 GITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
            GITGE L AY++ GP+YYQKLKHMVQDK+H+R+RGPR +LTRQPT  R +
Sbjct: 1044 GITGECLPAYVFFGPIYYQKLKHMVQDKMHSRARGPRAILTRQPTEGRSR 1093



 Score =  204 bits (518), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 111/219 (50%), Positives = 147/219 (67%), Gaps = 11/219 (5%)

Query: 118 LVLSFLKEKGLVKPH----IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGI 173
           L ++++  + L+  H    +D  DY  N  ++   Q  A ++ D    F  ++       
Sbjct: 378 LYIAYMTRRVLMAIHDPKMVDDRDYVGNKRLELAGQMMALLFEDSFKSFNYQF----KAA 433

Query: 174 ADKIIPKI-KAAQFDIVNHMRQD--TITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLS 230
            DKI+ K  +AA+FD  +H++    +IT  +  AI TGNW+++RF+MER G+T VLSRLS
Sbjct: 434 IDKILKKPNRAAEFDAYDHIQTHGWSITAGMERAIATGNWSLKRFRMERAGITHVLSRLS 493

Query: 231 YISGLGMMTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITT 290
           YIS LGMMTRI SQFEKTRKVSGPR+LQ SQ+GMLC SDTPEGEACGLVKNLALMTHITT
Sbjct: 494 YISALGMMTRITSQFEKTRKVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITT 553

Query: 291 ENDEKNMLKIMYNIGIEHIAMFNGEELSSPGVYLVFVNG 329
           E  E  + +I++ +G E +   +G EL S G Y+VFVNG
Sbjct: 554 EVPEDPVKRIVFILGAEDVQSASGTELYSDGAYIVFVNG 592



 Score =  155 bits (393), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 75/136 (55%), Positives = 94/136 (69%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G   FDDF+  G +EYLDVNE NDS+I + E  ++    THLEI PFT+LG  AG     
Sbjct: 666 GTMEFDDFISRGLVEYLDVNEENDSNICIYEKDLKEH-HTHLEIEPFTILGAVAG----- 719

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ  RIDTL+Y +VY Q+PMV+
Sbjct: 720 ---------LIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFTRIDTLLYLMVYPQQPMVK 770

Query: 808 SKTIRITNFHKLPAGK 823
           ++TI +  + KLPAG+
Sbjct: 771 TRTIELIKYDKLPAGQ 786



 Score =  101 bits (252), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 43/79 (54%), Positives = 62/79 (78%)

Query: 455 DARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAG 514
           +A D LS+  ++H+PV+ M F+ KA+Y+A M RR+++A+ DP M+DDRDY GNKRLELAG
Sbjct: 353 EAIDALSNMMMSHVPVVGMNFRPKALYIAYMTRRVLMAIHDPKMVDDRDYVGNKRLELAG 412

Query: 515 SLLSLMFEDVFKRFNSELK 533
            +++L+FED FK FN + K
Sbjct: 413 QMMALLFEDSFKSFNYQFK 431



 Score = 79.7 bits (195), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/70 (52%), Positives = 49/70 (70%)

Query: 342 CKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQS 401
           C+ E E         TP+ECRLRD+TY+API VD+EY +G+ +V R  + IGRMPIML+S
Sbjct: 124 CRVEEENVRGIQSTITPNECRLRDMTYAAPIVVDVEYKKGNVKVKRKGIHIGRMPIMLRS 183

Query: 402 SKCVLRNKTE 411
           +KC L  K+E
Sbjct: 184 NKCHLWGKSE 193



 Score = 79.3 bits (194), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/58 (56%), Positives = 47/58 (81%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           DKW L+ +FLK KGLVK HIDSF+YF++V++K++++AN  +YSDVD  F+ +Y DI V
Sbjct: 63  DKWNLLPAFLKVKGLVKQHIDSFNYFVDVQLKEILRANQYVYSDVDDKFFWRYTDIRV 120


>gi|390596427|gb|EIN05829.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
            [Punctularia strigosozonata HHB-11173 SS5]
          Length = 1143

 Score =  315 bits (806), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 151/265 (56%), Positives = 193/265 (72%), Gaps = 6/265 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G IG+NQ NRI+TL+Y   Y Q+PMV++KTI +  
Sbjct: 684  GLIPYPHHNQSPRNTYQCAMGKQAIGAIGFNQLNRIETLLYLHCYPQQPMVKTKTIELIG 743

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+AVMSYSGYDIEDALI+NKASLDRG+GRC V R ++ ++++YPN T DR
Sbjct: 744  YDKLPAGQNATVAVMSYSGYDIEDALILNKASLDRGYGRCQVLRKNQTLIRKYPNGTFDR 803

Query: 1033 IL-GPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAI---SMATP 1088
            +   P+ E    +  Y    +  DG+   GE++    V +NK  PT +         A+ 
Sbjct: 804  LADAPVDENGGVQKKY--DIIQMDGLAGVGERVDPGDVYINKQTPTNANDNAFVGQAASV 861

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
             YK  P++YK  V  Y++KV+++    +  LIK+L+RQTRRPE+GDKFSSRHGQKGV GL
Sbjct: 862  PYKNAPMTYKSPVSGYIDKVMITDTENEQTLIKVLMRQTRRPELGDKFSSRHGQKGVCGL 921

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            IV QEDMPFN+ GI PD IMNPHG 
Sbjct: 922  IVNQEDMPFNDQGIVPDSIMNPHGF 946



 Score =  276 bits (707), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 127/202 (62%), Positives = 156/202 (77%)

Query: 1169 NPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKF 1228
            N +   G      YK  P++YK  V  Y++KV+++    +  LIK+L+RQTRRPE+GDKF
Sbjct: 850  NDNAFVGQAASVPYKNAPMTYKSPVSGYIDKVMITDTENEQTLIKVLMRQTRRPELGDKF 909

Query: 1229 SSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGN 1288
            SSRHGQKGV GLIV QEDMPFN+ GI PD IMNPHG+PSRMTVGK+IELLAGKAG++ G 
Sbjct: 910  SSRHGQKGVCGLIVNQEDMPFNDQGIVPDSIMNPHGFPSRMTVGKMIELLAGKAGVLSGK 969

Query: 1289 YKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQ 1348
             + GTAFGG+K+ D+   LI +G+NY GKD+  SGITGE +EAY+Y GP+YYQKLKHMV 
Sbjct: 970  LQYGTAFGGSKVEDMSRILIENGFNYAGKDMLTSGITGEQMEAYVYFGPIYYQKLKHMVM 1029

Query: 1349 DKIHARSRGPRVVLTRQPTGRR 1370
            DK+HAR+RGPR  LTRQPT  R
Sbjct: 1030 DKMHARARGPRATLTRQPTEGR 1051



 Score =  210 bits (535), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 111/206 (53%), Positives = 145/206 (70%), Gaps = 7/206 (3%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPK-IKAAQFDIVNH 191
           +D  DY  N  ++   Q  A ++ D   LF     ++   I DK++ K  +  +FD  N 
Sbjct: 362 VDDRDYVGNKRLELAGQLLALLFED---LFKTFNSNLKSAI-DKVLKKPSRTNEFDAWNT 417

Query: 192 MR--QDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
           M+   D IT+    AI TGNW+++RFKMER GVT VLSRLS+IS LGMMTRI+SQFEKTR
Sbjct: 418 MQFMGDHITSGFVRAISTGNWSLKRFKMERAGVTHVLSRLSFISALGMMTRISSQFEKTR 477

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHI 309
           KVSGPR+LQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT+ +E+ +++I Y +G+E I
Sbjct: 478 KVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDVEEEPIIRIAYLLGVEDI 537

Query: 310 AMFNGEELSSPGVYLVFVNGILAGIT 335
            + +G E+  P  ++V VNG + G+T
Sbjct: 538 CLASGAEVYGPHTFVVHVNGTIIGLT 563



 Score =  161 bits (408), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 85/160 (53%), Positives = 105/160 (65%), Gaps = 25/160 (15%)

Query: 674 CQP-------RPTFLNMHQFL---GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRP 723
           C+P       RP   + H  L   G   FDDFL +G +EYLDVNE NDS+IA+ E+ I  
Sbjct: 607 CRPMIIVENQRPRVTSDHILLLKKGQVNFDDFLKKGLVEYLDVNEENDSYIALYEANIVS 666

Query: 724 GVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCI 783
             TTHLEI PFT+LG  AG              L+PYPHHNQ+PRNTYQCAMGKQA+G I
Sbjct: 667 S-TTHLEIEPFTILGAVAG--------------LIPYPHHNQSPRNTYQCAMGKQAIGAI 711

Query: 784 GYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
           G+NQ NRI+TL+Y   Y Q+PMV++KTI +  + KLPAG+
Sbjct: 712 GFNQLNRIETLLYLHCYPQQPMVKTKTIELIGYDKLPAGQ 751



 Score = 99.8 bits (247), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 43/80 (53%), Positives = 64/80 (80%)

Query: 454 DDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELA 513
           ++A + L++  +AH+PV  + F+ KA+++A M RR+++A++D  M+DDRDY GNKRLELA
Sbjct: 317 EEAMEALATIVLAHVPVNGLDFRPKAIFVATMTRRVLMAMADEKMVDDRDYVGNKRLELA 376

Query: 514 GSLLSLMFEDVFKRFNSELK 533
           G LL+L+FED+FK FNS LK
Sbjct: 377 GQLLALLFEDLFKTFNSNLK 396



 Score = 91.7 bits (226), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 39/65 (60%), Positives = 52/65 (80%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           + DKW L+ +FLK KGLVK HIDSF+YF++V+IK +++AN  + SDVDP F+LKY DIHV
Sbjct: 31  VEDKWLLLPAFLKVKGLVKQHIDSFNYFVDVDIKNILKANNKVTSDVDPRFWLKYTDIHV 90

Query: 172 GIADK 176
           G  D+
Sbjct: 91  GFPDR 95



 Score = 80.5 bits (197), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 37/68 (54%), Positives = 48/68 (70%)

Query: 344 PEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSK 403
           P+  ++    +  TPHECRLRD TYSAPI V I+YTRG   V R ++ IGR+PIML+S+K
Sbjct: 93  PDRTDADAIDKSVTPHECRLRDTTYSAPILVTIQYTRGKSVVRRPNVSIGRIPIMLRSNK 152

Query: 404 CVLRNKTE 411
           CVL  + E
Sbjct: 153 CVLTGRNE 160


>gi|156059482|ref|XP_001595664.1| hypothetical protein SS1G_03753 [Sclerotinia sclerotiorum 1980]
 gi|154701540|gb|EDO01279.1| hypothetical protein SS1G_03753 [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 1230

 Score =  315 bits (806), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 149/264 (56%), Positives = 194/264 (73%), Gaps = 4/264 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ +RIDTL+Y +VY Q+PMV+++TI +  
Sbjct: 762  GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFSRIDTLLYLMVYPQQPMVKTRTIELIK 821

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+AVMS+SGYDIEDAL++NKAS DRGFGRC V+R     LK+YPN++ DR
Sbjct: 822  YDKLPAGQNATVAVMSFSGYDIEDALVLNKASCDRGFGRCQVFRKYSTQLKKYPNRSQDR 881

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNK---SMPTISVSAISMATPE 1089
            I    +  +  KP+ +HR L  DGI   GE+I   +  +NK   S P  S       + +
Sbjct: 882  IADRQV-GENGKPIAKHRILGVDGIAMVGERINAGETYLNKESPSNPNSSGMGNDYGSND 940

Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             K  P+ YK    +Y++KV++S    ++ ++K+  RQTRRPE+GDKFSSRHGQKGV+G+I
Sbjct: 941  MKPAPMGYKLHDYAYIDKVMLSQTENESTVLKVQTRQTRRPELGDKFSSRHGQKGVVGII 1000

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
            V QEDMPF +SG+ PDIIMNPHG 
Sbjct: 1001 VNQEDMPFADSGVTPDIIMNPHGF 1024



 Score =  253 bits (645), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 123/237 (51%), Positives = 172/237 (72%), Gaps = 2/237 (0%)

Query: 1138 SRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPH--GLKGCDRITEYKEVPVSYKGSVPS 1195
            ++H   GV G+ +  E +   E+ +  +   NP+  G+       + K  P+ YK    +
Sbjct: 895  AKHRILGVDGIAMVGERINAGETYLNKESPSNPNSSGMGNDYGSNDMKPAPMGYKLHDYA 954

Query: 1196 YLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGIC 1255
            Y++KV++S    ++ ++K+  RQTRRPE+GDKFSSRHGQKGV+G+IV QEDMPF +SG+ 
Sbjct: 955  YIDKVMLSQTENESTVLKVQTRQTRRPELGDKFSSRHGQKGVVGIIVNQEDMPFADSGVT 1014

Query: 1256 PDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQ 1315
            PDIIMNPHG+PSRMTVGK++ELL+GKAG++ G+ + GT FGG+ +  + + LI  G++Y 
Sbjct: 1015 PDIIMNPHGFPSRMTVGKMLELLSGKAGVVNGSLEYGTCFGGSNVDVMGKILIDKGFSYS 1074

Query: 1316 GKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
            GKD   SGITGE+L AY++ GP+YYQKLKHMVQDK+H+RSRGPR +LTRQPT  R +
Sbjct: 1075 GKDFVTSGITGESLPAYVFFGPIYYQKLKHMVQDKMHSRSRGPRAILTRQPTEGRSR 1131



 Score =  206 bits (525), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 113/218 (51%), Positives = 148/218 (67%), Gaps = 8/218 (3%)

Query: 127 GLVKPH-IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKI-KAA 184
            +V P  +D  DY  N  ++   Q  + ++ D   LF     D+ + I DK++ K  +  
Sbjct: 433 AMVNPKLVDDRDYVGNKRLELAGQLLSLLFED---LFKKFNTDLKMNI-DKVLKKPNRGM 488

Query: 185 QFDIVNHMRQ--DTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRIN 242
           +FD  NHM+   + IT  +  AI TGNW+++RFKMER GVT VLSRLSYIS LGMMTRI+
Sbjct: 489 EFDAYNHMQSHGNYITIGMNRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRIS 548

Query: 243 SQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMY 302
           SQFEKTRKVSGPR+LQ SQ+GMLC SDTPEGEACGLVKNLALMTHITT +DE+ + K+ +
Sbjct: 549 SQFEKTRKVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTYDDEEPVKKLTF 608

Query: 303 NIGIEHIAMFNGEELSSPGVYLVFVNGILAGITCHHKE 340
            +G E I   +G+E+   G Y++FVNG    +T   K+
Sbjct: 609 VLGAEDIVSMSGKEIYEKGAYVIFVNGTPLALTRQPKK 646



 Score =  162 bits (409), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 78/136 (57%), Positives = 98/136 (72%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G   FDDFLY+G +EY+D NE NDS+IA+ E+ I    TTHLEI PFT+LG  AG     
Sbjct: 709 GTMDFDDFLYKGLLEYVDCNEENDSNIAIRENYINEA-TTHLEIEPFTVLGAVAG----- 762

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ +RIDTL+Y +VY Q+PMV+
Sbjct: 763 ---------LIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFSRIDTLLYLMVYPQQPMVK 813

Query: 808 SKTIRITNFHKLPAGK 823
           ++TI +  + KLPAG+
Sbjct: 814 TRTIELIKYDKLPAGQ 829



 Score =  104 bits (260), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 43/85 (50%), Positives = 68/85 (80%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           ++  + DA + L++  I H+PV+ + F+ KA+Y+  M+RR+++A+ +P ++DDRDY GNK
Sbjct: 390 RRNYIGDALEALANIIITHVPVVGLDFRPKALYICFMVRRVLMAMVNPKLVDDRDYVGNK 449

Query: 509 RLELAGSLLSLMFEDVFKRFNSELK 533
           RLELAG LLSL+FED+FK+FN++LK
Sbjct: 450 RLELAGQLLSLLFEDLFKKFNTDLK 474



 Score = 82.0 bits (201), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/65 (55%), Positives = 50/65 (76%)

Query: 113 RDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           +DKW LV +FLK KGLVK HIDSF+YF+  EIK +++AN  + S+VDP F+L+Y DI VG
Sbjct: 88  KDKWNLVPAFLKVKGLVKQHIDSFNYFVEHEIKDIVKANKRVTSEVDPKFWLEYTDIRVG 147

Query: 173 IADKI 177
             +++
Sbjct: 148 EPERM 152



 Score = 79.7 bits (195), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 44/57 (77%)

Query: 355 QTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKTE 411
           + TP+ECRLRD+TY+API VDI+Y RG   V R ++ IGRMPIML+SSKC L  K +
Sbjct: 162 EITPNECRLRDMTYAAPIRVDIKYMRGRTIVARKNIAIGRMPIMLKSSKCRLNGKND 218


>gi|330793440|ref|XP_003284792.1| RNA polymerase III, second largest subunit [Dictyostelium purpureum]
 gi|325085286|gb|EGC38696.1| RNA polymerase III, second largest subunit [Dictyostelium purpureum]
          Length = 1586

 Score =  314 bits (805), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 153/267 (57%), Positives = 195/267 (73%), Gaps = 11/267 (4%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ  RIDTL+Y LV+ QRP+ +++TI +  
Sbjct: 1128 GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLTRIDTLLYLLVHPQRPLCQTRTIELLQ 1187

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + +LPAG NAT+AVMSYSGYDIEDAL+MNKASLDRGFGRC+V +     +K++ N T DR
Sbjct: 1188 WFRLPAGHNATVAVMSYSGYDIEDALVMNKASLDRGFGRCIVLKKQVTSIKKHGNDTSDR 1247

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPE--- 1089
            I  P  + + R+   +   LD DGI  PGE   + Q+LVNK  P  +V       PE   
Sbjct: 1248 IFPPTPD-NLRQS--KFALLDSDGIAKPGELAQKGQILVNKYSPMNTVDP--APNPELIP 1302

Query: 1090 ---YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVI 1146
               YK   + YK   P++++KVL+++  +D  LIK+L+R TRRPE+GDKFSSRHGQKGV 
Sbjct: 1303 DSAYKSSYMGYKYENPAFIDKVLLTNGDDDQLLIKLLMRSTRRPELGDKFSSRHGQKGVC 1362

Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G+IV+QEDMPF++ GICPDIIMNPHG 
Sbjct: 1363 GIIVKQEDMPFSDLGICPDIIMNPHGF 1389



 Score =  259 bits (661), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 124/249 (49%), Positives = 172/249 (69%), Gaps = 8/249 (3%)

Query: 1124 LRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYK 1183
            LRQ++   +     ++ G+    G I+  +  P N     P+  + P         + YK
Sbjct: 1256 LRQSKFALLDSDGIAKPGELAQKGQILVNKYSPMNTVDPAPNPELIPD--------SAYK 1307

Query: 1184 EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVE 1243
               + YK   P++++KVL+++  +D  LIK+L+R TRRPE+GDKFSSRHGQKGV G+IV+
Sbjct: 1308 SSYMGYKYENPAFIDKVLLTNGDDDQLLIKLLMRSTRRPELGDKFSSRHGQKGVCGIIVK 1367

Query: 1244 QEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDV 1303
            QEDMPF++ GICPDIIMNPHG+PSRMT+GK+IELLAGKA ++ G +  GT FGG ++ ++
Sbjct: 1368 QEDMPFSDLGICPDIIMNPHGFPSRMTIGKMIELLAGKAAVLSGKFGYGTCFGGDRVANI 1427

Query: 1304 QEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLT 1363
             + LI  G++Y GKD   SG+TGE L  +I+ GP++YQKLKHMV DK+HAR+RGP V LT
Sbjct: 1428 SKVLISKGFSYGGKDYVTSGVTGEPLACFIFFGPIFYQKLKHMVMDKMHARARGPTVTLT 1487

Query: 1364 RQPTGRRWK 1372
            RQPT  R +
Sbjct: 1488 RQPTEGRAR 1496



 Score =  162 bits (410), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 78/135 (57%), Positives = 96/135 (71%), Gaps = 15/135 (11%)

Query: 688  GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
            G + FDDF+ EG IEYLDVNE NDS++A  E  I+P  TTHLEI PFT+LG  AG     
Sbjct: 1075 GLRTFDDFIKEGIIEYLDVNEENDSYLAWRELAIKPH-TTHLEIEPFTMLGCVAG----- 1128

Query: 748  YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                     L+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ  RIDTL+Y LV+ QRP+ +
Sbjct: 1129 ---------LIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLTRIDTLLYLLVHPQRPLCQ 1179

Query: 808  SKTIRITNFHKLPAG 822
            ++TI +  + +LPAG
Sbjct: 1180 TRTIELLQWFRLPAG 1194



 Score =  158 bits (399), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 85/154 (55%), Positives = 104/154 (67%), Gaps = 9/154 (5%)

Query: 124 KEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYL-DIHVGIADKIIPKIK 182
           K+KG     +D  DY+ N  I+   Q  + ++ DV    + K+L ++   I   I    +
Sbjct: 364 KDKGC----LDDKDYYGNKRIELSGQLISLLFEDV----FKKFLSELKKSIDQAIAKPNR 415

Query: 183 AAQFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRIN 242
           A  FD    +R DTITN  T AI +G W ++RF+MER GV+QVLSRLSYIS LGMMTRI 
Sbjct: 416 AEPFDFPKLIRTDTITNGFTHAISSGQWNLKRFRMERSGVSQVLSRLSYISCLGMMTRIQ 475

Query: 243 SQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEAC 276
           SQFEKTRKV+GPRSLQ SQWGMLCPSDTPEGEAC
Sbjct: 476 SQFEKTRKVAGPRSLQPSQWGMLCPSDTPEGEAC 509



 Score =  106 bits (264), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 46/87 (52%), Positives = 68/87 (78%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           KKT  ++ARD L+   + H+PV    F++K +Y+++MIRR+++A  D   LDD+DYYGNK
Sbjct: 319 KKTKSEEARDILAGVVLNHVPVRRYNFRLKVIYISLMIRRIIMASKDKGCLDDKDYYGNK 378

Query: 509 RLELAGSLLSLMFEDVFKRFNSELKET 535
           R+EL+G L+SL+FEDVFK+F SELK++
Sbjct: 379 RIELSGQLISLLFEDVFKKFLSELKKS 405



 Score = 81.6 bits (200), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 37/70 (52%), Positives = 55/70 (78%), Gaps = 1/70 (1%)

Query: 104 SKLKDS-PEIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLF 162
           SKL D    + +KWKLV +FLK +GLVK HIDSF++F+NVE+KK+++AN  + ++ DP F
Sbjct: 29  SKLTDDIKAVEEKWKLVPAFLKCRGLVKQHIDSFNFFVNVEMKKIVKANERLTTEQDPSF 88

Query: 163 YLKYLDIHVG 172
           ++K++DI VG
Sbjct: 89  FVKFVDIRVG 98



 Score = 81.6 bits (200), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 37/58 (63%), Positives = 45/58 (77%)

Query: 353 TRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
           + Q TP +CRLRD+TYSAPI VDIEYTRG   + + D+ IG +PIML+SS CVL NKT
Sbjct: 110 SSQQTPQKCRLRDMTYSAPILVDIEYTRGKTVIGKKDVHIGNIPIMLRSSNCVLANKT 167



 Score = 68.6 bits (166), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/59 (49%), Positives = 44/59 (74%)

Query: 276  CGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            CGLVKN ALMTH+TT++ E  +L++ +N+G++ I +  GEEL+S   +LV +NG + GI
Sbjct: 948  CGLVKNFALMTHVTTDDPEGPLLRLAFNLGVQDILLVTGEELNSRNAFLVLLNGQIIGI 1006


>gi|425771289|gb|EKV09736.1| DNA-directed RNA polymerase [Penicillium digitatum Pd1]
 gi|425776820|gb|EKV15021.1| DNA-directed RNA polymerase [Penicillium digitatum PHI26]
          Length = 1208

 Score =  314 bits (804), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 149/265 (56%), Positives = 190/265 (71%), Gaps = 6/265 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I  NQ  RID+++Y +VY Q+PMV+S+TI +T 
Sbjct: 742  GLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFQRIDSILYLMVYPQKPMVKSRTIELTK 801

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + +LPAGQNAT+AVMSYSGYDIEDAL++NK S+DRGFGRC V+R     LK YPN   D 
Sbjct: 802  YDQLPAGQNATVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYVTTLKSYPNGAKDS 861

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS----AISMATP 1088
            + GP  E     P+ +H  L+ DG+ A GE +   +  +NK  P +  S       M   
Sbjct: 862  LKGPTFENGV--PIRKHALLESDGLAAVGEMVNNGESYINKVTPRVQNSMGFTGSGMGGG 919

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
            +  E  ++YK   PSY++KVLVS+   +  LIK+L RQTRRPE+GDKFSSRHGQKGV+G+
Sbjct: 920  DVIEASMNYKLPDPSYIDKVLVSATEGETQLIKVLTRQTRRPEVGDKFSSRHGQKGVVGI 979

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            I +Q DMPF++ GI PDIIMNPHG 
Sbjct: 980  IADQADMPFSDQGINPDIIMNPHGF 1004



 Score =  253 bits (645), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 115/189 (60%), Positives = 151/189 (79%)

Query: 1184 EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVE 1243
            E  ++YK   PSY++KVLVS+   +  LIK+L RQTRRPE+GDKFSSRHGQKGV+G+I +
Sbjct: 923  EASMNYKLPDPSYIDKVLVSATEGETQLIKVLTRQTRRPEVGDKFSSRHGQKGVVGIIAD 982

Query: 1244 QEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDV 1303
            Q DMPF++ GI PDIIMNPHG+PSRMTVGK++EL+AGKAG++ G +  GT FGG+ + ++
Sbjct: 983  QADMPFSDQGINPDIIMNPHGFPSRMTVGKMLELVAGKAGVLSGQHGYGTCFGGSPVEEM 1042

Query: 1304 QEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLT 1363
             + LI  G++Y GKD   SGITGEAL  Y+++GP+YYQKLKHMVQDK+H+R++GP   LT
Sbjct: 1043 SQILIDKGFSYGGKDYLTSGITGEALPFYVFTGPIYYQKLKHMVQDKMHSRAKGPTATLT 1102

Query: 1364 RQPTGRRWK 1372
            RQPT  R +
Sbjct: 1103 RQPTEGRSR 1111



 Score =  204 bits (518), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 104/205 (50%), Positives = 140/205 (68%), Gaps = 5/205 (2%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFD--IVN 190
           +D  DY  N  ++   Q  A ++ D   LF     DI + I   +  + +A QFD   + 
Sbjct: 420 VDDRDYLGNKRLELAGQMLALLFED---LFKKFCFDIKMNIDKVLNKRNRAEQFDAWTIV 476

Query: 191 HMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRK 250
            M  + IT  +  AI TGNW+++RF+MER GVT VLSRLSYI+ LGMMTRI+SQFEKTRK
Sbjct: 477 TMHGNHITQGMNRAISTGNWSLKRFRMERAGVTHVLSRLSYIAALGMMTRISSQFEKTRK 536

Query: 251 VSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIA 310
           VSGPR+LQ SQ+GMLCP+DTPEGEACGLVKNLALMTHITT ++E  +  +++ +G+E I+
Sbjct: 537 VSGPRALQPSQFGMLCPADTPEGEACGLVKNLALMTHITTNDEEGPVRNLIFMLGVEDIS 596

Query: 311 MFNGEELSSPGVYLVFVNGILAGIT 335
              G++L + G Y + +NG   G+T
Sbjct: 597 SVGGQQLYARGAYTISINGTPTGLT 621



 Score =  157 bits (398), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 76/136 (55%), Positives = 95/136 (69%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G   FDDFL +G +EYLDVNE NDS+IA+ E  I     THLEI PFT+LG  AG     
Sbjct: 689 GKMEFDDFLAQGLVEYLDVNEENDSYIAIYEKDIS-NTHTHLEIEPFTVLGAVAG----- 742

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQA+G I  NQ  RID+++Y +VY Q+PMV+
Sbjct: 743 ---------LIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFQRIDSILYLMVYPQKPMVK 793

Query: 808 SKTIRITNFHKLPAGK 823
           S+TI +T + +LPAG+
Sbjct: 794 SRTIELTKYDQLPAGQ 809



 Score =  107 bits (266), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 55/135 (40%), Positives = 85/135 (62%), Gaps = 7/135 (5%)

Query: 429 QRTSPLLSCKKLRQKRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRR 488
           Q+    + C+    ++   Y+KT V +A + ++S  I+HI V +M F+ KA+Y+A M RR
Sbjct: 350 QQALEWIGCRIKINRKQAAYRKTHVQEAVEAIASVIISHIEVKDMNFRPKAIYVAHMARR 409

Query: 489 MVLALSDPDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELKETNLSGVVN------ 542
           +++A SDP ++DDRDY GNKRLELAG +L+L+FED+FK+F  ++K  N+  V+N      
Sbjct: 410 VLMAKSDPALVDDRDYLGNKRLELAGQMLALLFEDLFKKFCFDIK-MNIDKVLNKRNRAE 468

Query: 543 LVSGWWFELKYGNKI 557
               W     +GN I
Sbjct: 469 QFDAWTIVTMHGNHI 483



 Score = 87.0 bits (214), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 39/61 (63%), Positives = 46/61 (75%)

Query: 350 FNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNK 409
            ++    TP ECRLRD TY+API VD EY RG QRV+R  + IGR+PIML+SSKCVL NK
Sbjct: 158 IDFESTITPQECRLRDTTYAAPILVDFEYVRGRQRVIRRAVPIGRIPIMLRSSKCVLSNK 217

Query: 410 T 410
           T
Sbjct: 218 T 218



 Score = 77.4 bits (189), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 32/60 (53%), Positives = 49/60 (81%)

Query: 113 RDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           RDKW L+ +FLK KGLVK H+DS++YF+ V++KK++++++ I SDVD  FY+K+ DI+V 
Sbjct: 86  RDKWNLLPAFLKVKGLVKQHLDSYNYFVEVQMKKIVESSSTIRSDVDHNFYIKFTDIYVA 145


>gi|116199389|ref|XP_001225506.1| hypothetical protein CHGG_07850 [Chaetomium globosum CBS 148.51]
 gi|88179129|gb|EAQ86597.1| hypothetical protein CHGG_07850 [Chaetomium globosum CBS 148.51]
          Length = 1155

 Score =  314 bits (804), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 143/264 (54%), Positives = 195/264 (73%), Gaps = 4/264 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+P+PHHNQ+PRNTYQCAMGKQA+G I YNQ NRIDTL+Y LVY QRPMV +KTI++ +
Sbjct: 689  GLIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLYTLVYPQRPMVITKTIQLIH 748

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+ VMSYSGYDIEDAL++NKAS DRGFGRC V+R     L+QYPN   DR
Sbjct: 749  YDKLPAGQNATVVVMSYSGYDIEDALVLNKASCDRGFGRCQVFRKYTAELQQYPNGRKDR 808

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPE 1089
             LG + + +    + +H  LD+DG+   G ++   + ++ K  P    S        + +
Sbjct: 809  -LGGIQKDEAGNTIAKHACLDKDGLAVVGYRVHSGETMIMKETPIDQTSTGIGSDRGSDD 867

Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
            ++    +Y+ + P+Y++KV++S+  ++  ++K+  RQTRRPE+GDKFSSRHGQKGV+G+I
Sbjct: 868  FRPAATNYRIADPAYIDKVMISNTEKNTSIVKVQTRQTRRPELGDKFSSRHGQKGVVGII 927

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
             +QEDMPF++SG+ PDIIMNPHG 
Sbjct: 928  ADQEDMPFSDSGLVPDIIMNPHGF 951



 Score =  244 bits (623), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 111/201 (55%), Positives = 158/201 (78%), Gaps = 3/201 (1%)

Query: 1175 GCDRITE-YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
            G DR ++ ++    +Y+ + P+Y++KV++S+  ++  ++K+  RQTRRPE+GDKFSSRHG
Sbjct: 860  GSDRGSDDFRPAATNYRIADPAYIDKVMISNTEKNTSIVKVQTRQTRRPELGDKFSSRHG 919

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEG--NYKE 1291
            QKGV+G+I +QEDMPF++SG+ PDIIMNPHG+PSRMTVGKL E L GKA ++ G  +Y  
Sbjct: 920  QKGVVGIIADQEDMPFSDSGLVPDIIMNPHGFPSRMTVGKLFECLTGKASVVAGERDYGF 979

Query: 1292 GTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKI 1351
            G AF    + ++ + L+ HG++++GKD F SGITGE  EAY+++GP+YYQ+LKHMVQDK+
Sbjct: 980  GDAFRSHPVEEMGKVLVEHGFSWEGKDYFTSGITGEPHEAYLFNGPIYYQRLKHMVQDKM 1039

Query: 1352 HARSRGPRVVLTRQPTGRRWK 1372
            H+RSRGPR +LTRQPT  R +
Sbjct: 1040 HSRSRGPRAILTRQPTEGRSR 1060



 Score =  193 bits (491), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 93/146 (63%), Positives = 111/146 (76%), Gaps = 2/146 (1%)

Query: 197 ITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVSGPRS 256
           IT  L  AIQ+GNW ++RF M R GVT VLSRLSYI+ LGMMTRI+SQFEKTRKVSGPR+
Sbjct: 428 ITQGLNRAIQSGNWNVKRFNMNRAGVTHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRA 487

Query: 257 LQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNI--GIEHIAMFNG 314
           LQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT  +E+ +   ++ +  G+E I M+ G
Sbjct: 488 LQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTNAEEEPVKNWIFGLIPGVEPIRMYTG 547

Query: 315 EELSSPGVYLVFVNGILAGITCHHKE 340
            E+   G Y++ +NG    IT H KE
Sbjct: 548 SEMHKRGSYMIHLNGTPFAITKHPKE 573



 Score =  162 bits (410), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 80/137 (58%), Positives = 96/137 (70%), Gaps = 15/137 (10%)

Query: 687 LGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELL 746
           LG   FDDFL    IEYLDVNE ND+ IA+ E  +    TTH+EI PFT+LG  AG    
Sbjct: 635 LGKATFDDFLKRSVIEYLDVNEENDALIAIREDDVNHS-TTHMEIEPFTILGAVAG---- 689

Query: 747 QYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMV 806
                     L+P+PHHNQ+PRNTYQCAMGKQA+G I YNQ NRIDTL+Y LVY QRPMV
Sbjct: 690 ----------LIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLYTLVYPQRPMV 739

Query: 807 ESKTIRITNFHKLPAGK 823
            +KTI++ ++ KLPAG+
Sbjct: 740 ITKTIQLIHYDKLPAGQ 756



 Score = 94.0 bits (232), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 40/85 (47%), Positives = 66/85 (77%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           +++PV++  D L++  IAH+ + ++ F  K++Y+++M+RR+++A  +P ++DDRD+ GNK
Sbjct: 315 RRSPVEEGLDALANIIIAHVTIKDLDFYPKSIYISMMVRRVLMAAHNPRLVDDRDFVGNK 374

Query: 509 RLELAGSLLSLMFEDVFKRFNSELK 533
           RLELAG LLSL+FED+FK F   LK
Sbjct: 375 RLELAGQLLSLLFEDMFKMFVGGLK 399



 Score = 73.9 bits (180), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 30/58 (51%), Positives = 43/58 (74%)

Query: 349 SFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVL 406
            F    + TP ECRLRD+TY+AP+ VDI Y+R  +R+VR D+ + R+P+ML+S+KC L
Sbjct: 97  DFKARDEVTPMECRLRDMTYAAPVVVDITYSRDRKRIVRKDIPLCRIPVMLKSAKCCL 154



 Score = 67.0 bits (162), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 30/59 (50%), Positives = 46/59 (77%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           DK++L+ +FLK KGLVK HIDS+++F+  EIK +++AN +I SD +  F+L++ DI VG
Sbjct: 30  DKYQLLPAFLKVKGLVKQHIDSYNFFVEQEIKDIVKANRSIRSDQEKDFWLEFTDIRVG 88


>gi|326479873|gb|EGE03883.1| DNA-directed RNA polymerase III subunit RPC2 [Trichophyton equinum
            CBS 127.97]
          Length = 1210

 Score =  313 bits (803), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 147/266 (55%), Positives = 194/266 (72%), Gaps = 7/266 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I  NQ  RID+L+Y +VY Q+PMV+++TI +TN
Sbjct: 743  GLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYAMVYPQKPMVKTRTIELTN 802

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNA +AVMSYSGYDIEDAL++NK S+DRGFGRC V+R     LK + N T DR
Sbjct: 803  YDKLPAGQNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYSANLKSHSNGTKDR 862

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATP---- 1088
            ++GP  E      + +H  LD DG+ A GE++   +V +NK  P  ++S+    +     
Sbjct: 863  LVGPTRENGV--SIRKHGLLDNDGLAAVGEKVSPGEVYINKETPDNALSSGITGSDAGLP 920

Query: 1089 -EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
             +Y   P +YK    SY++KV++S+   ++ LIK+  RQTRRPE+GDKFSSRHGQKGV+G
Sbjct: 921  VKYNPTPQTYKLPDYSYIDKVMISTTEGESQLIKVQTRQTRRPEVGDKFSSRHGQKGVVG 980

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            +I EQ DMPF ++G+ PDIIMNPHG 
Sbjct: 981  IIAEQADMPFTDTGLVPDIIMNPHGF 1006



 Score =  254 bits (648), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 116/203 (57%), Positives = 155/203 (76%), Gaps = 2/203 (0%)

Query: 1172 GLKGCDR--ITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFS 1229
            G+ G D     +Y   P +YK    SY++KV++S+   ++ LIK+  RQTRRPE+GDKFS
Sbjct: 911  GITGSDAGLPVKYNPTPQTYKLPDYSYIDKVMISTTEGESQLIKVQTRQTRRPEVGDKFS 970

Query: 1230 SRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNY 1289
            SRHGQKGV+G+I EQ DMPF ++G+ PDIIMNPHG+PSRMTVGK++EL+AGKAG++ G +
Sbjct: 971  SRHGQKGVVGIIAEQADMPFTDTGLVPDIIMNPHGFPSRMTVGKMLELVAGKAGIISGQF 1030

Query: 1290 KEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQD 1349
              GT FGG+ + ++   L+ HG++Y GKD   SGITGE L  Y+++GP+YYQKLKHMVQD
Sbjct: 1031 GYGTPFGGSPVEEMSAILVDHGFSYGGKDYLTSGITGEPLTYYVFTGPIYYQKLKHMVQD 1090

Query: 1350 KIHARSRGPRVVLTRQPTGRRWK 1372
            K+H+R+RGPR  LTRQPT  R +
Sbjct: 1091 KMHSRARGPRATLTRQPTEGRSR 1113



 Score =  197 bits (502), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 106/200 (53%), Positives = 137/200 (68%), Gaps = 7/200 (3%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPK-IKAAQFDI--V 189
           +D  DY  N  ++   Q  A ++ D   LF     DI + I DK++ K ++   FD   V
Sbjct: 421 VDDRDYVGNKRLELAGQLLALLFED---LFKKFCFDIKMNI-DKVLKKPVRTEAFDAYPV 476

Query: 190 NHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
             +  + IT  +  AI TGNW+++RF+MER GVT VLSRLSYI+ LGMMTRI+SQFEKTR
Sbjct: 477 VAIHGNHITQGMNRAIATGNWSLKRFRMERAGVTHVLSRLSYIAALGMMTRISSQFEKTR 536

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHI 309
           KVSGPR+LQ SQ+GMLC SDTPEGEACGLVKNLALMTHITT ++E+ + K+++ +G E I
Sbjct: 537 KVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTNDEEEPVQKLVFILGAEDI 596

Query: 310 AMFNGEELSSPGVYLVFVNG 329
               G E    G Y+VF+NG
Sbjct: 597 QTVGGRECFGQGAYIVFMNG 616



 Score =  159 bits (402), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 78/136 (57%), Positives = 96/136 (70%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G   FDDFL  G +EY+DVNE ND++IAV E  I    TTHLEI PFT+LG  AG     
Sbjct: 690 GTMDFDDFLSNGLVEYVDVNEENDANIAVYEREIDAN-TTHLEIEPFTVLGAVAG----- 743

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQA+G I  NQ  RID+L+Y +VY Q+PMV+
Sbjct: 744 ---------LIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYAMVYPQKPMVK 794

Query: 808 SKTIRITNFHKLPAGK 823
           ++TI +TN+ KLPAG+
Sbjct: 795 TRTIELTNYDKLPAGQ 810



 Score = 93.2 bits (230), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 43/89 (48%), Positives = 65/89 (73%)

Query: 445 FQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDY 504
           F   ++  V +A + +SS  I+H+ V +M F+ KA+Y+  M RR+++A  DP ++DDRDY
Sbjct: 367 FGPARRNYVAEAIEAISSVIISHVQVQDMNFRPKALYVTHMARRVLMAKLDPSLVDDRDY 426

Query: 505 YGNKRLELAGSLLSLMFEDVFKRFNSELK 533
            GNKRLELAG LL+L+FED+FK+F  ++K
Sbjct: 427 VGNKRLELAGQLLALLFEDLFKKFCFDIK 455



 Score = 86.7 bits (213), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 38/54 (70%), Positives = 45/54 (83%)

Query: 357 TPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
           TP+ECRLRD+TY+API VD EY RG QRV R+   IGRMP+ML+SSKCVL NK+
Sbjct: 163 TPNECRLRDMTYAAPILVDFEYVRGRQRVKRNGTAIGRMPVMLRSSKCVLSNKS 216



 Score = 85.1 bits (209), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 35/60 (58%), Positives = 51/60 (85%)

Query: 113 RDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           RDKW L+ +FLK KGLVK HIDS++YF+ V++KK++Q++A I SD+DP FY+K+ DI++G
Sbjct: 85  RDKWNLLPAFLKVKGLVKQHIDSYNYFVEVQLKKIVQSSAEIRSDIDPKFYIKFHDIYLG 144


>gi|7022241|dbj|BAA91527.1| unnamed protein product [Homo sapiens]
          Length = 343

 Score =  313 bits (803), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 148/190 (77%), Positives = 169/190 (88%)

Query: 1181 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1240
            +YK+VP++YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GL
Sbjct: 60   QYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGL 119

Query: 1241 IVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKL 1300
            IV QEDMPF +SGICPDIIMNPHG+PSRMTVGKLIELLAGKAG+++G +  GTAFGG+K+
Sbjct: 120  IVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSKV 179

Query: 1301 VDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRV 1360
             DV E+L+ HGYNY GKD   SGITGE LEAYIY GPVYYQKLKHMV DK+HAR+RGPR 
Sbjct: 180  KDVCEDLVCHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRA 239

Query: 1361 VLTRQPTGRR 1370
            VLTRQPT  R
Sbjct: 240  VLTRQPTEGR 249



 Score =  213 bits (541), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 98/144 (68%), Positives = 121/144 (84%), Gaps = 4/144 (2%)

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT----PE 1089
            +GP+L+A TRKP++RH  LD DGI +PGE++  +QVLVNKSMPT++   +  +     P+
Sbjct: 1    MGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQPQ 60

Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
            YK+VP++YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GLI
Sbjct: 61   YKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLI 120

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
            V QEDMPF +SGICPDIIMNPHG 
Sbjct: 121  VPQEDMPFCDSGICPDIIMNPHGF 144


>gi|295658889|ref|XP_002790004.1| DNA-directed RNA polymerase III subunit RPC2 [Paracoccidioides sp.
            'lutzii' Pb01]
 gi|226282087|gb|EEH37653.1| DNA-directed RNA polymerase III subunit RPC2 [Paracoccidioides sp.
            'lutzii' Pb01]
          Length = 1205

 Score =  313 bits (801), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 148/266 (55%), Positives = 193/266 (72%), Gaps = 7/266 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I  NQ  RID+L+Y +VY Q+PMV+++TI +  
Sbjct: 738  GLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYTMVYPQKPMVKTRTIELIK 797

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + +LPAGQ AT+AVMSYSGYDIEDAL++NK S+DRGFGRC V+R     LK Y N T D+
Sbjct: 798  YDRLPAGQAATVAVMSYSGYDIEDALVLNKGSIDRGFGRCQVFRKYSTNLKSYSNGTKDK 857

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPE--- 1089
            + GP  + +   PV +H  LD DG+ A GE++ + +V +NK  P  ++S+    +     
Sbjct: 858  LKGP--DRENGLPVRKHALLDNDGLAAVGEKVNQGEVYINKVTPENALSSGITGSDAGRP 915

Query: 1090 --YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
              Y   P +YK   PSY++KV++SS   +  LIK+  RQTRRPE+GDKFSSRHGQKGV+G
Sbjct: 916  ITYIPSPQTYKLPDPSYIDKVMISSTEAENQLIKVQTRQTRRPEVGDKFSSRHGQKGVVG 975

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            +I EQ DMPF++ GI PDIIMNPHG 
Sbjct: 976  IIAEQADMPFSDLGIVPDIIMNPHGF 1001



 Score =  266 bits (681), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 127/231 (54%), Positives = 172/231 (74%), Gaps = 5/231 (2%)

Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHGLKGCD--RITEYKEVPVSYKGSVPSYLEKVL 1201
              +G  V Q ++  N+  + P+  ++  G+ G D  R   Y   P +YK   PSY++KV+
Sbjct: 881  AAVGEKVNQGEVYINK--VTPENALSS-GITGSDAGRPITYIPSPQTYKLPDPSYIDKVM 937

Query: 1202 VSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMN 1261
            +SS   +  LIK+  RQTRRPE+GDKFSSRHGQKGV+G+I EQ DMPF++ GI PDIIMN
Sbjct: 938  ISSTEAENQLIKVQTRQTRRPEVGDKFSSRHGQKGVVGIIAEQADMPFSDLGIVPDIIMN 997

Query: 1262 PHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFY 1321
            PHG+PSRMTVGK++EL+AGKAG++ G +  GTAFGG+ + ++   L++HG++Y GKD   
Sbjct: 998  PHGFPSRMTVGKMLELVAGKAGILSGQFSYGTAFGGSPVEEMSAILVKHGFSYGGKDCLT 1057

Query: 1322 SGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
            SGITGE+L AY++ GP+YYQKLKHMVQDK+H+R+RGPR +LTRQPT  R +
Sbjct: 1058 SGITGESLPAYVFMGPIYYQKLKHMVQDKMHSRARGPRAILTRQPTEGRSR 1108



 Score =  206 bits (523), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 107/200 (53%), Positives = 140/200 (70%), Gaps = 7/200 (3%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPK-IKAAQFDI--V 189
           +D  DY  N  ++   Q  + ++ D   LF     DI + I DK++ K ++  QFD   V
Sbjct: 416 VDDRDYVGNKRLELAGQLLSLLFED---LFKKFQFDIKMNI-DKVLKKPVRTEQFDAYGV 471

Query: 190 NHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
             +  + IT  +  AI TGNW+++RF+MER GVT VLSRLSYI+ LGMMTRI+SQFEKTR
Sbjct: 472 VAIHGNHITQGMNRAISTGNWSLKRFRMERAGVTHVLSRLSYIAALGMMTRISSQFEKTR 531

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHI 309
           KVSGPR+LQ SQ+GMLCPSDTPEGEACGLVKNLALMTHITT ++E+ + K+++ +G E +
Sbjct: 532 KVSGPRALQPSQFGMLCPSDTPEGEACGLVKNLALMTHITTNDEEEPVRKLIFALGAEDV 591

Query: 310 AMFNGEELSSPGVYLVFVNG 329
               G EL   G Y+VF+NG
Sbjct: 592 QTVGGRELHGQGTYIVFLNG 611



 Score =  155 bits (393), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 76/137 (55%), Positives = 94/137 (68%), Gaps = 15/137 (10%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G   FDDFL  G +EYLD NE NDS+IAV E+ I    TTHLEI PFT+LG  AG     
Sbjct: 685 GSMEFDDFLAHGLVEYLDCNEENDSNIAVYENDIVDS-TTHLEIEPFTILGAVAG----- 738

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQA+G I  NQ  RID+L+Y +VY Q+PMV+
Sbjct: 739 ---------LIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYTMVYPQKPMVK 789

Query: 808 SKTIRITNFHKLPAGKC 824
           ++TI +  + +LPAG+ 
Sbjct: 790 TRTIELIKYDRLPAGQA 806



 Score = 99.0 bits (245), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 45/89 (50%), Positives = 66/89 (74%)

Query: 445 FQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDY 504
           F   ++  V +A + +SS  I+H+ V N+ F+ KA+Y+A M RR+++A  DP ++DDRDY
Sbjct: 362 FGVIRRNYVQEAIEAISSVIISHVVVENLNFRPKALYVAHMARRVLMAKHDPSLVDDRDY 421

Query: 505 YGNKRLELAGSLLSLMFEDVFKRFNSELK 533
            GNKRLELAG LLSL+FED+FK+F  ++K
Sbjct: 422 VGNKRLELAGQLLSLLFEDLFKKFQFDIK 450



 Score = 92.4 bits (228), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 41/67 (61%), Positives = 51/67 (76%)

Query: 345 EIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKC 404
           E + +FN     TP+ECRLRD+TY++PI VD EY RG QRV R+   IGRMP+ML+SSKC
Sbjct: 146 EQDSNFNAASTITPNECRLRDMTYASPILVDFEYVRGRQRVKRNGTAIGRMPVMLRSSKC 205

Query: 405 VLRNKTE 411
           VL NK+E
Sbjct: 206 VLSNKSE 212



 Score = 84.0 bits (206), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 35/60 (58%), Positives = 51/60 (85%)

Query: 113 RDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           +DKW L+ +FLK KGLVK HIDS++YF+ V++KK++QA+A I SDVDP FY+++ DI++G
Sbjct: 79  KDKWNLLPAFLKVKGLVKQHIDSYNYFVEVQLKKIVQASAEIRSDVDPNFYIRFHDIYLG 138


>gi|226287945|gb|EEH43458.1| DNA-directed RNA polymerase III subunit RPC2 [Paracoccidioides
            brasiliensis Pb18]
          Length = 1209

 Score =  312 bits (800), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 148/266 (55%), Positives = 192/266 (72%), Gaps = 7/266 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I  NQ  RID+L+Y +VY Q+PMV+++TI +  
Sbjct: 780  GLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYTMVYPQKPMVKTRTIELIK 839

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + +LPAGQ AT+AVMSYSGYDIEDAL++NK S+DRGFGRC V+R     LK Y N T D+
Sbjct: 840  YDRLPAGQAATVAVMSYSGYDIEDALVLNKGSIDRGFGRCQVFRKYSTNLKSYSNGTKDK 899

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPE--- 1089
            + GP  + +   PV +H  LD DG+ A GE++   +V +NK  P  ++S+    +     
Sbjct: 900  LKGP--DRENGLPVRKHALLDNDGLAAVGEKVNHGEVYINKVTPENALSSGITGSDAGRP 957

Query: 1090 --YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
              Y   P +YK   PSY++KV++SS   +  LIK+  RQTRRPE+GDKFSSRHGQKGV+G
Sbjct: 958  ITYIPSPQTYKLPDPSYIDKVMISSTEAENQLIKVQTRQTRRPEVGDKFSSRHGQKGVVG 1017

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            +I EQ DMPF++ GI PDIIMNPHG 
Sbjct: 1018 IIAEQADMPFSDLGIVPDIIMNPHGF 1043



 Score =  206 bits (525), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 108/206 (52%), Positives = 142/206 (68%), Gaps = 7/206 (3%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPK-IKAAQFDI--V 189
           +D  DY  N  ++   Q  + ++ D   LF     DI + I DK++ K ++  QFD   V
Sbjct: 458 VDDRDYVGNKRLELAGQLLSLLFED---LFKKFQFDIKMNI-DKVLKKPVRTEQFDAYGV 513

Query: 190 NHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
             +  + IT  +  AI TGNW+++RF+MER GVT VLSRLSYI+ LGMMTRI+SQFEKTR
Sbjct: 514 VAIHGNHITQGMNRAISTGNWSLKRFRMERAGVTHVLSRLSYIAALGMMTRISSQFEKTR 573

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHI 309
           KVSGPR+LQ SQ+GMLCPSDTPEGEACGLVKNLALMTHITT ++E+ + K+++ +G E +
Sbjct: 574 KVSGPRALQPSQFGMLCPSDTPEGEACGLVKNLALMTHITTNDEEEPVRKLIFALGAEDV 633

Query: 310 AMFNGEELSSPGVYLVFVNGILAGIT 335
               G EL   G Y+VF+NG    +T
Sbjct: 634 QTVGGRELHGQGAYIVFLNGSPIALT 659



 Score =  187 bits (476), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 99/203 (48%), Positives = 129/203 (63%), Gaps = 25/203 (12%)

Query: 1172 GLKGCD--RITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFS 1229
            G+ G D  R   Y   P +YK   PSY++KV++SS   +  LIK+  RQTRRPE+GDKFS
Sbjct: 948  GITGSDAGRPITYIPSPQTYKLPDPSYIDKVMISSTEAENQLIKVQTRQTRRPEVGDKFS 1007

Query: 1230 SRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNY 1289
            SRHGQKGV+G+I EQ DMPF++ GI PDIIMNPHG+PSRMTVGK++EL+AGKAG++ G +
Sbjct: 1008 SRHGQKGVVGIIAEQADMPFSDLGIVPDIIMNPHGFPSRMTVGKMLELVAGKAGILSGQF 1067

Query: 1290 KEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQD 1349
              GTAFGG+ L      L        G+               I S        + + +D
Sbjct: 1068 SYGTAFGGSPLRKCLLSLSSMASRMVGR---------------IAS--------RRVSRD 1104

Query: 1350 KIHARSRGPRVVLTRQPTGRRWK 1372
            K+H+R+RGPR +LTRQPT  R +
Sbjct: 1105 KMHSRARGPRAILTRQPTEGRSR 1127



 Score =  156 bits (394), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 76/137 (55%), Positives = 93/137 (67%), Gaps = 15/137 (10%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G   FDDFL  G +EYLD NE NDS+IAV E  I    TTHLEI PFT+LG  AG     
Sbjct: 727 GSMEFDDFLAHGLVEYLDCNEENDSNIAVYEDDIVDS-TTHLEIEPFTILGAVAG----- 780

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQA+G I  NQ  RID+L+Y +VY Q+PMV+
Sbjct: 781 ---------LIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYTMVYPQKPMVK 831

Query: 808 SKTIRITNFHKLPAGKC 824
           ++TI +  + +LPAG+ 
Sbjct: 832 TRTIELIKYDRLPAGQA 848



 Score = 99.0 bits (245), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 45/89 (50%), Positives = 66/89 (74%)

Query: 445 FQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDY 504
           F   ++  V +A + +SS  I+H+ V N+ F+ KA+Y+A M RR+++A  DP ++DDRDY
Sbjct: 404 FGVIRRNYVQEAIEAISSVIISHVVVENLNFRPKALYVAHMARRVLMAKHDPSLVDDRDY 463

Query: 505 YGNKRLELAGSLLSLMFEDVFKRFNSELK 533
            GNKRLELAG LLSL+FED+FK+F  ++K
Sbjct: 464 VGNKRLELAGQLLSLLFEDLFKKFQFDIK 492



 Score = 92.4 bits (228), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 41/67 (61%), Positives = 51/67 (76%)

Query: 345 EIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKC 404
           E + +FN     TP+ECRLRD+TY++PI VD EY RG QRV R+   IGRMP+ML+SSKC
Sbjct: 188 EQDSNFNAASTITPNECRLRDMTYASPILVDFEYVRGRQRVKRNGTAIGRMPVMLRSSKC 247

Query: 405 VLRNKTE 411
           VL NK+E
Sbjct: 248 VLSNKSE 254



 Score = 76.6 bits (187), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 32/53 (60%), Positives = 45/53 (84%)

Query: 113 RDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLK 165
           +DKW L+ +FLK KGLVK HIDS++YF+ V++KK++QA+A I SDVDP FY++
Sbjct: 107 KDKWNLLPAFLKVKGLVKQHIDSYNYFVEVQLKKIVQASAEIRSDVDPNFYIR 159


>gi|145341844|ref|XP_001416013.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144576236|gb|ABO94305.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 1146

 Score =  312 bits (799), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 158/268 (58%), Positives = 195/268 (72%), Gaps = 9/268 (3%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            G++PYPHHNQ+PRNTYQCAMGKQAMG I +NQ NR+DTLMY LVY Q+P+V++KTI +  
Sbjct: 678  GIIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLNRMDTLMYLLVYPQKPIVKTKTIELIG 737

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + +L AGQNATIAVMSYSGYDIEDA++MN+ASLDRGFGRC V R     +K+Y N+T DR
Sbjct: 738  YDRLGAGQNATIAVMSYSGYDIEDAIVMNRASLDRGFGRCTVLRKYSAQVKKYSNRTMDR 797

Query: 1033 ILGPLLEADTR-KPVYRHRALDQDGIVAPGEQICERQVLVNKSMP--TISVSAISMATPE 1089
            I+GP  + D R     RH  LD DGI A G +I    + VNK  P  T    A   A P+
Sbjct: 798  IVGP--KDDHRANQNSRHHLLDDDGIAAVGGRIKPGDIYVNKQTPVNTRDPMANPHAMPD 855

Query: 1090 --YKEVPVSYKGSV--PSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV 1145
              Y+  P+SYKG     + ++KVL++   E  F IK L+RQTRRPE+GDKFSSRHGQKGV
Sbjct: 856  TMYRSNPLSYKGPAGESAIVDKVLLTMTDEGQFNIKTLVRQTRRPEVGDKFSSRHGQKGV 915

Query: 1146 IGLIVEQEDMPFNESGICPDIIMNPHGL 1173
             G+I++QED PF+E GI PD+IMNPHG 
Sbjct: 916  CGIILDQEDFPFSERGITPDLIMNPHGF 943



 Score =  270 bits (691), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 128/210 (60%), Positives = 161/210 (76%), Gaps = 6/210 (2%)

Query: 1165 DIIMNPHGLKGCDRITEYKEVPVSYKGSV--PSYLEKVLVSSNSEDAFLIKMLLRQTRRP 1222
            D + NPH +      T Y+  P+SYKG     + ++KVL++   E  F IK L+RQTRRP
Sbjct: 845  DPMANPHAMPD----TMYRSNPLSYKGPAGESAIVDKVLLTMTDEGQFNIKTLVRQTRRP 900

Query: 1223 EIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKA 1282
            E+GDKFSSRHGQKGV G+I++QED PF+E GI PD+IMNPHG+PSRMTVGK+IELL GKA
Sbjct: 901  EVGDKFSSRHGQKGVCGIILDQEDFPFSERGITPDLIMNPHGFPSRMTVGKMIELLGGKA 960

Query: 1283 GLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQK 1342
            GL  G + +GTAFGG  +  +Q+ L+  GY+Y+GKD+ + GITGEALE  ++ GPVYYQK
Sbjct: 961  GLESGRFHDGTAFGGDTVEAIQQTLVESGYSYKGKDMLHCGITGEALEVNVFMGPVYYQK 1020

Query: 1343 LKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
            LKHMVQDK+HAR+RGPRVVLTRQPT  R +
Sbjct: 1021 LKHMVQDKMHARARGPRVVLTRQPTEGRAR 1050



 Score =  220 bits (560), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 110/205 (53%), Positives = 147/205 (71%), Gaps = 7/205 (3%)

Query: 132 HIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG-IADKIIPKI-KAAQFDIV 189
            ID  DY+ N  ++   Q  A ++ D       K L+  +   AD ++ K  +A QFDI+
Sbjct: 359 QIDDKDYYGNKRLELAGQLIALLFEDC-----FKRLNADLKRQADAVLSKANRATQFDIL 413

Query: 190 NHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
             +RQDT++N L  AI +GNWT++RF+MER+GVTQVLSRLS+IS LGMMTRI SQFEKTR
Sbjct: 414 KCIRQDTLSNGLEHAISSGNWTVKRFRMERKGVTQVLSRLSFISALGMMTRITSQFEKTR 473

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHI 309
           KVSGPR+LQ SQWGMLCPSDTPEGE+CGLVKNLALMTH+TT+++E+ + ++ + +G+E +
Sbjct: 474 KVSGPRALQPSQWGMLCPSDTPEGESCGLVKNLALMTHVTTDDEEEPLRRLAHALGVEPL 533

Query: 310 AMFNGEELSSPGVYLVFVNGILAGI 334
              N  E+ SP    V +NG L G+
Sbjct: 534 TWLNAGEMHSPSGAHVLMNGSLLGV 558



 Score =  163 bits (413), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 80/136 (58%), Positives = 99/136 (72%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G + F+DFL EG +EYLDVNE N+S+IA+ E  +    TTHLEI PFTLLGVCAGI    
Sbjct: 625 GHRTFNDFLREGLVEYLDVNEENNSYIALYEDEVNDE-TTHLEIEPFTLLGVCAGI---- 679

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                     +PYPHHNQ+PRNTYQCAMGKQAMG I +NQ NR+DTLMY LVY Q+P+V+
Sbjct: 680 ----------IPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLNRMDTLMYLLVYPQKPIVK 729

Query: 808 SKTIRITNFHKLPAGK 823
           +KTI +  + +L AG+
Sbjct: 730 TKTIELIGYDRLGAGQ 745



 Score =  108 bits (270), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 44/88 (50%), Positives = 68/88 (77%)

Query: 446 QTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYY 505
           + + ++ VD+ARD L+   +AH+PV +  F+ K  Y+++M+RR++ A+ DP  +DD+DYY
Sbjct: 307 RNFGRSRVDEARDILAGVVLAHVPVTSYDFRQKCAYISIMVRRILNAMLDPTQIDDKDYY 366

Query: 506 GNKRLELAGSLLSLMFEDVFKRFNSELK 533
           GNKRLELAG L++L+FED FKR N++LK
Sbjct: 367 GNKRLELAGQLIALLFEDCFKRLNADLK 394



 Score = 85.1 bits (209), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/100 (45%), Positives = 60/100 (60%), Gaps = 17/100 (17%)

Query: 318 SSPGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIE 377
           S P  YL + N            V +P +EE +    + TP +CRLRD+TY+APITVD+E
Sbjct: 66  SDPNFYLKYTN----------IHVGRPSVEEDY-VVEEITPQQCRLRDMTYAAPITVDVE 114

Query: 378 YTRGSQRVVR------SDLVIGRMPIMLQSSKCVLRNKTE 411
           YTRG + V R        +VIGR+P+ML+SS+CVL  K E
Sbjct: 115 YTRGKEIVTRQAKNGVGGVVIGRIPLMLRSSRCVLTGKNE 154



 Score = 76.6 bits (187), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/63 (55%), Positives = 48/63 (76%), Gaps = 2/63 (3%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANAN--IYSDVDPLFYLKYLDI 169
           + DK++L+ +FLK +GLV+ HIDSF+Y +N EIKK++ A AN  +  D DP FYLKY +I
Sbjct: 18  LEDKYELLPAFLKVRGLVRQHIDSFNYLVNEEIKKIIHAKANERVTCDSDPNFYLKYTNI 77

Query: 170 HVG 172
           HVG
Sbjct: 78  HVG 80


>gi|225678942|gb|EEH17226.1| DNA-directed RNA polymerase III subunit RPC2 [Paracoccidioides
            brasiliensis Pb03]
          Length = 1232

 Score =  311 bits (798), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 148/266 (55%), Positives = 192/266 (72%), Gaps = 7/266 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I  NQ  RID+L+Y +VY Q+PMV+++TI +  
Sbjct: 780  GLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYTMVYPQKPMVKTRTIELIK 839

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + +LPAGQ AT+AVMSYSGYDIEDAL++NK S+DRGFGRC V+R     LK Y N T D+
Sbjct: 840  YDRLPAGQAATVAVMSYSGYDIEDALVLNKGSIDRGFGRCQVFRKYSTNLKSYSNGTKDK 899

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPE--- 1089
            + GP  + +   PV +H  LD DG+ A GE++   +V +NK  P  ++S+    +     
Sbjct: 900  LKGP--DRENGLPVRKHALLDNDGLAAVGEKVNHGEVYINKVTPENALSSGITGSDAGRP 957

Query: 1090 --YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
              Y   P +YK   PSY++KV++SS   +  LIK+  RQTRRPE+GDKFSSRHGQKGV+G
Sbjct: 958  ITYIPSPQTYKLPDPSYIDKVMISSTEAENQLIKVQTRQTRRPEVGDKFSSRHGQKGVVG 1017

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            +I EQ DMPF++ GI PDIIMNPHG 
Sbjct: 1018 IIAEQADMPFSDLGIVPDIIMNPHGF 1043



 Score =  266 bits (681), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 122/203 (60%), Positives = 159/203 (78%), Gaps = 2/203 (0%)

Query: 1172 GLKGCD--RITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFS 1229
            G+ G D  R   Y   P +YK   PSY++KV++SS   +  LIK+  RQTRRPE+GDKFS
Sbjct: 948  GITGSDAGRPITYIPSPQTYKLPDPSYIDKVMISSTEAENQLIKVQTRQTRRPEVGDKFS 1007

Query: 1230 SRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNY 1289
            SRHGQKGV+G+I EQ DMPF++ GI PDIIMNPHG+PSRMTVGK++EL+AGKAG++ G +
Sbjct: 1008 SRHGQKGVVGIIAEQADMPFSDLGIVPDIIMNPHGFPSRMTVGKMLELVAGKAGILSGQF 1067

Query: 1290 KEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQD 1349
              GTAFGG+ + ++   L++HG++Y GKD   SGITGE+L AY++ GP+YYQKLKHMVQD
Sbjct: 1068 SYGTAFGGSPVEEMSAVLVKHGFSYGGKDCLTSGITGESLPAYVFMGPIYYQKLKHMVQD 1127

Query: 1350 KIHARSRGPRVVLTRQPTGRRWK 1372
            K+H+R+RGPR +LTRQPT  R +
Sbjct: 1128 KMHSRARGPRAILTRQPTEGRSR 1150



 Score =  206 bits (523), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 108/206 (52%), Positives = 142/206 (68%), Gaps = 7/206 (3%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPK-IKAAQFDI--V 189
           +D  DY  N  ++   Q  + ++ D   LF     DI + I DK++ K ++  QFD   V
Sbjct: 458 VDDRDYVGNKRLELAGQLLSLLFED---LFKKFQFDIKMNI-DKVLKKPVRTEQFDAYGV 513

Query: 190 NHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
             +  + IT  +  AI TGNW+++RF+MER GVT VLSRLSYI+ LGMMTRI+SQFEKTR
Sbjct: 514 VAIHGNHITQGMNRAISTGNWSLKRFRMERAGVTHVLSRLSYIAALGMMTRISSQFEKTR 573

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHI 309
           KVSGPR+LQ SQ+GMLCPSDTPEGEACGLVKNLALMTHITT ++E+ + K+++ +G E +
Sbjct: 574 KVSGPRALQPSQFGMLCPSDTPEGEACGLVKNLALMTHITTNDEEEPVRKLIFALGAEDV 633

Query: 310 AMFNGEELSSPGVYLVFVNGILAGIT 335
               G EL   G Y+VF+NG    +T
Sbjct: 634 QTVGGRELHGQGAYIVFLNGSPIALT 659



 Score =  155 bits (392), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 76/137 (55%), Positives = 93/137 (67%), Gaps = 15/137 (10%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G   FDDFL  G +EYLD NE NDS+IAV E  I    TTHLEI PFT+LG  AG     
Sbjct: 727 GSMEFDDFLAHGLVEYLDCNEENDSNIAVYEDDIVDS-TTHLEIEPFTILGAVAG----- 780

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQA+G I  NQ  RID+L+Y +VY Q+PMV+
Sbjct: 781 ---------LIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYTMVYPQKPMVK 831

Query: 808 SKTIRITNFHKLPAGKC 824
           ++TI +  + +LPAG+ 
Sbjct: 832 TRTIELIKYDRLPAGQA 848



 Score = 99.0 bits (245), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 45/89 (50%), Positives = 66/89 (74%)

Query: 445 FQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDY 504
           F   ++  V +A + +SS  I+H+ V N+ F+ KA+Y+A M RR+++A  DP ++DDRDY
Sbjct: 404 FGVIRRNYVQEAIEAISSVIISHVVVENLNFRPKALYVAHMARRVLMAKHDPSLVDDRDY 463

Query: 505 YGNKRLELAGSLLSLMFEDVFKRFNSELK 533
            GNKRLELAG LLSL+FED+FK+F  ++K
Sbjct: 464 VGNKRLELAGQLLSLLFEDLFKKFQFDIK 492



 Score = 92.4 bits (228), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 41/67 (61%), Positives = 51/67 (76%)

Query: 345 EIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKC 404
           E + +FN     TP+ECRLRD+TY++PI VD EY RG QRV R+   IGRMP+ML+SSKC
Sbjct: 188 EQDSNFNAASTITPNECRLRDMTYASPILVDFEYVRGRQRVKRNGTAIGRMPVMLRSSKC 247

Query: 405 VLRNKTE 411
           VL NK+E
Sbjct: 248 VLSNKSE 254



 Score = 76.6 bits (187), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/53 (60%), Positives = 45/53 (84%)

Query: 113 RDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLK 165
           +DKW L+ +FLK KGLVK HIDS++YF+ V++KK++QA+A I SDVDP FY++
Sbjct: 107 KDKWNLLPAFLKVKGLVKQHIDSYNYFVEVQLKKIVQASAEIRSDVDPNFYIR 159


>gi|403334977|gb|EJY66659.1| RNA polymerase III [Oxytricha trifallax]
          Length = 1146

 Score =  311 bits (797), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 147/269 (54%), Positives = 198/269 (73%), Gaps = 8/269 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G IG NQ NR+DTL++ L + Q+P+V++KTI I N
Sbjct: 680  GLIPYPHHNQSPRNTYQCAMGKQAIGSIGLNQLNRVDTLLFLLTHPQKPLVKTKTIEIIN 739

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F +LPAGQNA++A+MSYSGYDIEDA+++NKASLDRGF R +  R  +  +K+Y N   D 
Sbjct: 740  FEELPAGQNASVAIMSYSGYDIEDAVVLNKASLDRGFARAMYIRRYQTDIKKYSNGATDI 799

Query: 1033 ILGPLLEADTRKPVYRH-RALDQDGIVAPGEQICERQVLVNKSMPTIS------VSAISM 1085
            IL  + + D ++   +   ALD+DG+   GE +    V +NK  P +       ++ I +
Sbjct: 800  ILPGVSQKDQKRAFNKKFHALDEDGMARVGESLQNGDVFINKYTPVMGENQTGYLNEIDL 859

Query: 1086 ATPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV 1145
             T EYK    SYKG+ P+Y+++V+++S  E+ F IKM+ RQ+R PEIGDKFSSRHGQKGV
Sbjct: 860  TTLEYKSQAQSYKGANPAYVDRVIMTSTPENPFFIKMITRQSRVPEIGDKFSSRHGQKGV 919

Query: 1146 IGLIVEQEDMPFNE-SGICPDIIMNPHGL 1173
            +GLIV QED+PF+E +G CPD+IMNPHG 
Sbjct: 920  VGLIVPQEDLPFSERNGWCPDLIMNPHGF 948



 Score =  269 bits (687), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 120/191 (62%), Positives = 160/191 (83%), Gaps = 1/191 (0%)

Query: 1181 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1240
            EYK    SYKG+ P+Y+++V+++S  E+ F IKM+ RQ+R PEIGDKFSSRHGQKGV+GL
Sbjct: 863  EYKSQAQSYKGANPAYVDRVIMTSTPENPFFIKMITRQSRVPEIGDKFSSRHGQKGVVGL 922

Query: 1241 IVEQEDMPFNE-SGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTK 1299
            IV QED+PF+E +G CPD+IMNPHG+PSRMTVGK+IEL++GKAG++EG +K GTAF G  
Sbjct: 923  IVPQEDLPFSERNGWCPDLIMNPHGFPSRMTVGKMIELISGKAGVLEGEFKYGTAFSGDP 982

Query: 1300 LVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPR 1359
            + ++ + LI+HGY++ GKD+  SGITGE L  +++SGP+YYQ+LKHMVQDK+H+R+RGP+
Sbjct: 983  VEEMGKLLIKHGYSFDGKDVLMSGITGEVLPCFVFSGPIYYQRLKHMVQDKMHSRARGPK 1042

Query: 1360 VVLTRQPTGRR 1370
             VLTRQPT  R
Sbjct: 1043 SVLTRQPTEGR 1053



 Score =  207 bits (528), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 121/274 (44%), Positives = 171/274 (62%), Gaps = 17/274 (6%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVNHM 192
           +D  DY+ N  ++   Q  + ++ D   LF     D+   I D ++ K K  +FD +  +
Sbjct: 361 LDDKDYYGNKRLELSGQLISLLFED---LFKKFQFDLKKQI-DIMLVKQKKEKFDALTCI 416

Query: 193 RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVS 252
           + DTIT  L  +I +GNW+++RFKMER+ VTQVLSRLSYI+ LGMM RINSQFEKTRK+S
Sbjct: 417 KPDTITQGLEMSISSGNWSLKRFKMERKSVTQVLSRLSYIAALGMMARINSQFEKTRKIS 476

Query: 253 GPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMF 312
           GPR+LQ S WG++CPSDTPEGE+CGLVKNLAL TH+TT++ EK +L+I  ++G+E  A+ 
Sbjct: 477 GPRALQPSHWGIICPSDTPEGESCGLVKNLALTTHVTTDSPEKPLLRICIDLGMEDAALL 536

Query: 313 NGEELSSPGVYLVFVNGILAGITCH-HKEVCKPEIEESFNYTRQTTPHECRLRDL--TYS 369
            G+EL S   +LVF+NG   G+    HK V       +F + R+      R+++    Y 
Sbjct: 537 GGDELYSKNHFLVFLNGQPIGVVKQPHKFV------RNFRFLRK----RGRVQEFVSVYM 586

Query: 370 APITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSK 403
           +     I     + R+VR  +VI R    LQ S+
Sbjct: 587 SEQQNTINIASDAGRLVRPLIVIERGRPKLQQSQ 620



 Score =  155 bits (393), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 74/138 (53%), Positives = 98/138 (71%), Gaps = 15/138 (10%)

Query: 686 FLGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIEL 745
            LG + F+DFL EG +EYLDVNE N++ IA++E+ +     TH+EI P T+LG  AG   
Sbjct: 625 ILGLRDFNDFLREGLLEYLDVNEENNALIALNENALTQA-HTHMEIDPLTILGCVAG--- 680

Query: 746 LQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPM 805
                      L+PYPHHNQ+PRNTYQCAMGKQA+G IG NQ NR+DTL++ L + Q+P+
Sbjct: 681 -----------LIPYPHHNQSPRNTYQCAMGKQAIGSIGLNQLNRVDTLLFLLTHPQKPL 729

Query: 806 VESKTIRITNFHKLPAGK 823
           V++KTI I NF +LPAG+
Sbjct: 730 VKTKTIEIINFEELPAGQ 747



 Score =  102 bits (255), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 48/93 (51%), Positives = 70/93 (75%), Gaps = 1/93 (1%)

Query: 443 KRFQTYKKTPVDDARDFLSSTCIAHIPV-INMRFKMKAMYLAVMIRRMVLALSDPDMLDD 501
           K FQ   KT +++ARD L++  +AHIP+  ++ +  K  YL +MIRR++ A+ DP  LDD
Sbjct: 304 KSFQGRPKTKLEEARDILTNVVLAHIPMSAHLPYFAKCRYLGMMIRRIIEAVHDPSKLDD 363

Query: 502 RDYYGNKRLELAGSLLSLMFEDVFKRFNSELKE 534
           +DYYGNKRLEL+G L+SL+FED+FK+F  +LK+
Sbjct: 364 KDYYGNKRLELSGQLISLLFEDLFKKFQFDLKK 396



 Score = 88.6 bits (218), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/72 (55%), Positives = 58/72 (80%), Gaps = 5/72 (6%)

Query: 111 EIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIH 170
           +I DKWKLV +FL+ +GLVK HIDS+++F+NV++K++++AN  I SD+DP FYLK+ DIH
Sbjct: 32  KIEDKWKLVPAFLRLRGLVKAHIDSYNHFLNVDLKEIIRANQFITSDIDPAFYLKFTDIH 91

Query: 171 VGIADKIIPKIK 182
           VG     +PKI+
Sbjct: 92  VG-----MPKIE 98



 Score = 78.2 bits (191), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/88 (46%), Positives = 56/88 (63%), Gaps = 11/88 (12%)

Query: 319 SPGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEY 378
            P  YL F + I  G+         P+IEE F       PHECR+RDLTYSAPI V+IEY
Sbjct: 80  DPAFYLKFTD-IHVGM---------PKIEEDFE-QHNLMPHECRIRDLTYSAPIYVEIEY 128

Query: 379 TRGSQRVVRSDLVIGRMPIMLQSSKCVL 406
           T+G +  ++++++IGRMP+ML +S C L
Sbjct: 129 TKGDRIYLKNEVLIGRMPMMLGASNCWL 156


>gi|115396768|ref|XP_001214023.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Aspergillus
            terreus NIH2624]
 gi|114193592|gb|EAU35292.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Aspergillus
            terreus NIH2624]
          Length = 1219

 Score =  311 bits (796), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 147/267 (55%), Positives = 192/267 (71%), Gaps = 9/267 (3%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I  NQ  RID+++Y +VY Q+PMV+S+TI +T 
Sbjct: 752  GLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVYPQKPMVKSRTIELTK 811

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + +LPAGQNA +AVMSYSGYDIEDAL++NK S+DRGFGRC V+R     LK Y N T D 
Sbjct: 812  YDQLPAGQNAIVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYVTNLKSYSNGTKDM 871

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPE--- 1089
            +  P  E D   P+ +H  L+ DG+ A GEQ+   +V +NKS P    ++  +  P+   
Sbjct: 872  LTPPSYENDA--PIRKHALLESDGLAAVGEQVNAGEVYINKSTPD-QANSFGIGGPDPNR 928

Query: 1090 ---YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVI 1146
               Y   P++YK   P+Y+++VL+S    +  L+K+L RQTRRPE+GDKFSSRHGQKGV+
Sbjct: 929  PINYMPTPMTYKLPDPAYIDQVLLSVTENENQLVKVLTRQTRRPEVGDKFSSRHGQKGVV 988

Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G+I +Q DMPF + GI PDIIMNPHG 
Sbjct: 989  GIIADQADMPFTDQGINPDIIMNPHGF 1015



 Score =  258 bits (660), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 119/206 (57%), Positives = 158/206 (76%), Gaps = 2/206 (0%)

Query: 1169 NPHGLKGCD--RITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGD 1226
            N  G+ G D  R   Y   P++YK   P+Y+++VL+S    +  L+K+L RQTRRPE+GD
Sbjct: 917  NSFGIGGPDPNRPINYMPTPMTYKLPDPAYIDQVLLSVTENENQLVKVLTRQTRRPEVGD 976

Query: 1227 KFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLME 1286
            KFSSRHGQKGV+G+I +Q DMPF + GI PDIIMNPHG+PSRMTVGK++EL+AGKAG++ 
Sbjct: 977  KFSSRHGQKGVVGIIADQADMPFTDQGINPDIIMNPHGFPSRMTVGKMLELVAGKAGVLS 1036

Query: 1287 GNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHM 1346
            G +  GT FGG+ + ++ + LI  G++Y GKD   SGITGEAL  Y+++GP+YYQKLKHM
Sbjct: 1037 GQHGYGTCFGGSPVEEMSQILIDKGFSYGGKDYLTSGITGEALPFYVFTGPIYYQKLKHM 1096

Query: 1347 VQDKIHARSRGPRVVLTRQPTGRRWK 1372
            VQDK+H+R+RGPR +LTRQPT  R +
Sbjct: 1097 VQDKMHSRARGPRAILTRQPTEGRSR 1122



 Score =  202 bits (514), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 104/205 (50%), Positives = 136/205 (66%), Gaps = 5/205 (2%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDI--VN 190
           +D  DY  N  ++   Q  A ++ D   LF     DI + +   +  + +A  FD   V 
Sbjct: 430 VDDRDYLGNKRLELAGQLLALLFED---LFKKFCFDIKMNVDKVLNKRNRAEAFDAWSVM 486

Query: 191 HMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRK 250
            M  + IT  +  AI TGNW+++RF+MER GVT VLSRLSYI+ LGMMTRI+SQFEKTRK
Sbjct: 487 SMHTNHITQGMNRAISTGNWSLKRFRMERAGVTHVLSRLSYIAALGMMTRISSQFEKTRK 546

Query: 251 VSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIA 310
           VSGPR+LQ SQ+GMLCP+DTPEGEACGLVKNLALMTHITT ++E  +  +++ +G E I 
Sbjct: 547 VSGPRALQPSQFGMLCPADTPEGEACGLVKNLALMTHITTNDEEGPIRNLIFMLGAEDIQ 606

Query: 311 MFNGEELSSPGVYLVFVNGILAGIT 335
              G+EL  PG Y + +NG    +T
Sbjct: 607 TLGGKELYGPGCYTISINGTPTALT 631



 Score =  158 bits (399), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 78/139 (56%), Positives = 97/139 (69%), Gaps = 15/139 (10%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G  +FDDFL +G +EYLDVNE NDS IA+ E  I    TTHLEI PFT+LG  AG     
Sbjct: 699 GTMQFDDFLAQGLVEYLDVNEENDSLIAIYEKDISE-TTTHLEIEPFTILGAVAG----- 752

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQA+G I  NQ  RID+++Y +VY Q+PMV+
Sbjct: 753 ---------LIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVYPQKPMVK 803

Query: 808 SKTIRITNFHKLPAGKCQI 826
           S+TI +T + +LPAG+  I
Sbjct: 804 SRTIELTKYDQLPAGQNAI 822



 Score =  103 bits (257), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 49/100 (49%), Positives = 76/100 (76%), Gaps = 1/100 (1%)

Query: 443 KRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDR 502
           ++  +Y++T V +A + ++S  I+HI V NM F+ KA+Y+A M RR+++A +DP ++DDR
Sbjct: 374 RKQASYRRTHVQEAIEAIASVIISHIEVKNMNFRPKAIYVAHMARRVLMAKNDPTLVDDR 433

Query: 503 DYYGNKRLELAGSLLSLMFEDVFKRFNSELKETNLSGVVN 542
           DY GNKRLELAG LL+L+FED+FK+F  ++K  N+  V+N
Sbjct: 434 DYLGNKRLELAGQLLALLFEDLFKKFCFDIK-MNVDKVLN 472



 Score = 81.6 bits (200), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 36/54 (66%), Positives = 42/54 (77%)

Query: 357 TPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
           TP ECRLRD TY+API VD +Y RG QRV +    IGRMP+ML+SSKCVL NK+
Sbjct: 175 TPQECRLRDTTYAAPIQVDFDYVRGRQRVRKRGYAIGRMPVMLRSSKCVLANKS 228



 Score = 74.3 bits (181), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 31/60 (51%), Positives = 49/60 (81%)

Query: 113 RDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           +DKW L+ +FLK KGLVK HIDS++Y + V++KK++++++ I SDVD  FY+K+ DI++G
Sbjct: 95  KDKWNLLPAFLKVKGLVKQHIDSYNYLVEVQLKKIVESSSIIRSDVDHNFYIKFTDIYLG 154


>gi|154277042|ref|XP_001539366.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Ajellomyces
            capsulatus NAm1]
 gi|150414439|gb|EDN09804.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Ajellomyces
            capsulatus NAm1]
          Length = 1186

 Score =  310 bits (795), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 152/294 (51%), Positives = 199/294 (67%), Gaps = 7/294 (2%)

Query: 885  YFDVRTPYRLRRLLCWECVLYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQ 944
            Y  V    RLR    W+          PGL+PYPHHNQ+PRNTYQCAMGKQA+G I  NQ
Sbjct: 691  YIAVYEEDRLRARRIWKSNRLPFSALWPGLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQ 750

Query: 945  QNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGQNATIAVMSYSGYDIEDALIMNKAS 1004
              RID+L+Y +VY Q+PMV+++TI +  + KLPAGQ+AT+AVMSYSGYDIEDAL++NK S
Sbjct: 751  FLRIDSLLYTMVYPQKPMVKTRTIELIKYDKLPAGQSATVAVMSYSGYDIEDALVLNKGS 810

Query: 1005 LDRGFGRCLVYRNSKCVLKQYPNQTHDRILGPLLEADTRKPVYRHRALDQDGIVAPGEQI 1064
            +DRGFGRC V+R     LK Y N T D++ GP  + +   P+ +H  LD DG+ A GE++
Sbjct: 811  VDRGFGRCQVFRKYSTNLKSYSNGTKDKLKGP--DRENGVPIRKHALLDNDGLAAVGEKV 868

Query: 1065 CERQVLVNKSMPTISVSAISMATP-----EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFL 1119
               +V +NK  P  ++S+    +       Y   P +YK   PSY++KV++S+   +  L
Sbjct: 869  NHGEVYINKVTPENALSSGITGSDAGRPIAYIPSPQTYKLPDPSYIDKVMISATEAENQL 928

Query: 1120 IKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            IK+  RQTR PE+GDKFSSRHGQKGV+G+I E  DMPF++ GI PDIIMNPHG 
Sbjct: 929  IKVQTRQTRVPEVGDKFSSRHGQKGVVGIIAEHADMPFSDLGIVPDIIMNPHGF 982



 Score =  257 bits (657), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 119/201 (59%), Positives = 154/201 (76%), Gaps = 2/201 (0%)

Query: 1172 GLKGCD--RITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFS 1229
            G+ G D  R   Y   P +YK   PSY++KV++S+   +  LIK+  RQTR PE+GDKFS
Sbjct: 887  GITGSDAGRPIAYIPSPQTYKLPDPSYIDKVMISATEAENQLIKVQTRQTRVPEVGDKFS 946

Query: 1230 SRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNY 1289
            SRHGQKGV+G+I E  DMPF++ GI PDIIMNPHG+PSRMTVGK++EL+AGKAG++ G +
Sbjct: 947  SRHGQKGVVGIIAEHADMPFSDLGIVPDIIMNPHGFPSRMTVGKMLELIAGKAGILSGQF 1006

Query: 1290 KEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQD 1349
              GTAFGG+ + ++   L+ HG++Y GKD   SGITGE L AY++ GP+YYQKLKHMVQD
Sbjct: 1007 GYGTAFGGSPVEEMSAILVDHGFSYGGKDYLTSGITGEPLPAYVFMGPIYYQKLKHMVQD 1066

Query: 1350 KIHARSRGPRVVLTRQPTGRR 1370
            K+H+R+RGPR +LTRQPT  R
Sbjct: 1067 KMHSRARGPRAILTRQPTEGR 1087



 Score =  209 bits (532), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 134/325 (41%), Positives = 184/325 (56%), Gaps = 23/325 (7%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPK-IKAAQFDI--V 189
           +D  DY  N  ++   Q  A ++ D   LF     DI + I DK++ K ++  QFD   V
Sbjct: 406 VDDRDYVGNKRLELAGQLLALLFED---LFKKFQFDIKMNI-DKVLKKPVRTEQFDAYGV 461

Query: 190 NHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
             +  + IT  +  AI TGNW+++RF+MER GVT VLSRLSYI+ LGMMTRI+SQFEKTR
Sbjct: 462 VAIHGNHITQGMNRAISTGNWSLKRFRMERAGVTHVLSRLSYIAALGMMTRISSQFEKTR 521

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHI 309
           KVSGPR+LQ SQ+GMLCPSDTPEGEACGLVKNLALMTHITT ++E+ + K+++ +G E +
Sbjct: 522 KVSGPRALQPSQFGMLCPSDTPEGEACGLVKNLALMTHITTNDEEQPVRKLIFALGAEDV 581

Query: 310 AMFNGEELSSPGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHECRLRDLTYS 369
               G EL   G Y++F+NG    +T   K         SF   R+T            S
Sbjct: 582 QTVGGRELHGQGAYIIFLNGSPIALTRRPKFFL-----NSFRRLRRTG---------RVS 627

Query: 370 APITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKTEYTSSSRRASTSSVTMHSQ 429
             I+V I + + +  V   D  I R  I+++  K   R+    T+S    S S   +  +
Sbjct: 628 EFISVFINHHQNAVHVATDDGRICRPLIIVEDGKSNERDDGNSTTSWLMVSWSIWIVMRK 687

Query: 430 RTS--PLLSCKKLRQKRFQTYKKTP 452
            TS   +    +LR +R     + P
Sbjct: 688 TTSYIAVYEEDRLRARRIWKSNRLP 712



 Score =  109 bits (273), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 45/69 (65%), Positives = 58/69 (84%)

Query: 755 PGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRIT 814
           PGL+PYPHHNQ+PRNTYQCAMGKQA+G I  NQ  RID+L+Y +VY Q+PMV+++TI + 
Sbjct: 718 PGLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYTMVYPQKPMVKTRTIELI 777

Query: 815 NFHKLPAGK 823
            + KLPAG+
Sbjct: 778 KYDKLPAGQ 786



 Score = 97.4 bits (241), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 44/89 (49%), Positives = 66/89 (74%)

Query: 445 FQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDY 504
           F   ++  V +A + +SS  I+H+ V N+ F+ KA+Y+A M RR+++A  DP ++DDRDY
Sbjct: 352 FGITRRNHVQEAIEAISSVIISHVVVENLNFRPKALYVAHMARRVLMAKHDPSLVDDRDY 411

Query: 505 YGNKRLELAGSLLSLMFEDVFKRFNSELK 533
            GNKRLELAG LL+L+FED+FK+F  ++K
Sbjct: 412 VGNKRLELAGQLLALLFEDLFKKFQFDIK 440



 Score = 91.7 bits (226), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 41/67 (61%), Positives = 50/67 (74%)

Query: 345 EIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKC 404
           E +  F+     TP+ECRLRD+TY+API VD EY RG QRV R+   IGRMP+ML+SSKC
Sbjct: 136 EQDSKFDLASTITPNECRLRDMTYAAPILVDFEYVRGRQRVKRNGTAIGRMPVMLRSSKC 195

Query: 405 VLRNKTE 411
           VL NK+E
Sbjct: 196 VLSNKSE 202



 Score = 82.8 bits (203), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/60 (58%), Positives = 51/60 (85%)

Query: 113 RDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           +DKW L+ +FLK KGLVK HIDS++YF+ V++KK++QA+A I SDVDP FY+++ DI++G
Sbjct: 69  QDKWNLLPAFLKIKGLVKQHIDSYNYFVEVQLKKIVQASAEIRSDVDPNFYIRFHDIYLG 128


>gi|169597943|ref|XP_001792395.1| hypothetical protein SNOG_01766 [Phaeosphaeria nodorum SN15]
 gi|160707624|gb|EAT91415.2| hypothetical protein SNOG_01766 [Phaeosphaeria nodorum SN15]
          Length = 1443

 Score =  310 bits (795), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 154/261 (59%), Positives = 187/261 (71%), Gaps = 7/261 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ +RIDT++Y +VY Q PMV+++TI +T 
Sbjct: 988  GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFSRIDTILYLMVYPQEPMVKTRTIELTK 1047

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+AVMSYSGYDIEDALI+NKAS DRGFGRC V +     LK Y N T DR
Sbjct: 1048 YDKLPAGQNATVAVMSYSGYDIEDALILNKASCDRGFGRCQVMKKVSHQLKSYANGTSDR 1107

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKE 1092
            I    L+ D   P   H+A+ QDGI   G +I +    + K++P  +    S     YK+
Sbjct: 1108 INAGALKVD--DPT--HQAIGQDGIAQVGARINQGDAFLLKAIPQDTAGPPSTT---YKD 1160

Query: 1093 VPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQ 1152
             P  YK    SY++KV ++ N     LIK+L RQTRRPE+GDKFSSRHGQKG  GLIV+Q
Sbjct: 1161 KPEKYKLPDCSYIDKVCITENEAGTTLIKILNRQTRRPELGDKFSSRHGQKGTTGLIVQQ 1220

Query: 1153 EDMPFNESGICPDIIMNPHGL 1173
            EDMPFN+ GI PDIIMNPHG 
Sbjct: 1221 EDMPFNDQGINPDIIMNPHGF 1241



 Score =  262 bits (669), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 121/193 (62%), Positives = 152/193 (78%)

Query: 1180 TEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1239
            T YK+ P  YK    SY++KV ++ N     LIK+L RQTRRPE+GDKFSSRHGQKG  G
Sbjct: 1156 TTYKDKPEKYKLPDCSYIDKVCITENEAGTTLIKILNRQTRRPELGDKFSSRHGQKGTTG 1215

Query: 1240 LIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTK 1299
            LIV+QEDMPFN+ GI PDIIMNPHG+PSRMTVGK++ELL+GKAG++ G  + GTAFGG++
Sbjct: 1216 LIVQQEDMPFNDQGINPDIIMNPHGFPSRMTVGKMMELLSGKAGVLNGTLEYGTAFGGSR 1275

Query: 1300 LVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPR 1359
            + D+ + L+  G++Y GKD   SGITGEA + Y + GP+YYQKLKHMVQDK+HAR+RGPR
Sbjct: 1276 VEDMADILVSKGFSYTGKDYLTSGITGEAHQFYTFFGPIYYQKLKHMVQDKMHARARGPR 1335

Query: 1360 VVLTRQPTGRRWK 1372
             +LTRQPT  R +
Sbjct: 1336 AILTRQPTEGRAR 1348



 Score =  199 bits (507), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 102/164 (62%), Positives = 124/164 (75%), Gaps = 3/164 (1%)

Query: 175 DKIIPKIKAAQ-FDIVNH--MRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSY 231
           DK++ K   AQ FD  +H  + ++ IT  +  AI TGNW+++RFKM+R GVT VLSRLSY
Sbjct: 704 DKVLKKQNRAQEFDAFSHFSVHKNHITMGIERAIATGNWSLKRFKMDRAGVTHVLSRLSY 763

Query: 232 ISGLGMMTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTE 291
           I+ LGMMTRI+SQFEKTRKVSGPR+LQ SQ+GMLC SDTPEGEACGLVKNLALMTHITTE
Sbjct: 764 IAALGMMTRISSQFEKTRKVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTE 823

Query: 292 NDEKNMLKIMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAGIT 335
           +DE  + KI++ +G E I    GEE+   GVY V +NG    IT
Sbjct: 824 DDEDPVRKIIFLLGAEEICSQTGEEIHREGVYSVCLNGTPIAIT 867



 Score =  159 bits (401), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 76/136 (55%), Positives = 96/136 (70%), Gaps = 15/136 (11%)

Query: 688  GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
            G   F+DFL  G +EYLD NE ND++IA+ E+ I    TTHLEI PFT+LG  AG     
Sbjct: 935  GTMEFEDFLTRGLVEYLDTNEENDTNIALKETDINQH-TTHLEIEPFTILGAVAG----- 988

Query: 748  YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                     L+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ +RIDT++Y +VY Q PMV+
Sbjct: 989  ---------LIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFSRIDTILYLMVYPQEPMVK 1039

Query: 808  SKTIRITNFHKLPAGK 823
            ++TI +T + KLPAG+
Sbjct: 1040 TRTIELTKYDKLPAGQ 1055



 Score = 94.7 bits (234), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 40/79 (50%), Positives = 61/79 (77%)

Query: 455 DARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAG 514
           +A + L++  + H+PV    ++ KA+Y+A+M RR+++A+ DP ++DDRDY GNKRLEL+G
Sbjct: 622 EAIECLANVVLPHVPVEGTNYRPKALYVALMARRVLMAMQDPKLVDDRDYVGNKRLELSG 681

Query: 515 SLLSLMFEDVFKRFNSELK 533
            +LSL+FED FKRFN + K
Sbjct: 682 QMLSLLFEDHFKRFNHDFK 700



 Score = 84.7 bits (208), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 39/69 (56%), Positives = 52/69 (75%)

Query: 343 KPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSS 402
           + E ++  N+    TP+ECRLRD+TY+API VDI YTRGS +V R+ + IGRMPIML+S+
Sbjct: 397 RQEEDDLDNHRSTVTPNECRLRDMTYAAPIVVDIVYTRGSAKVKRTGIKIGRMPIMLKSN 456

Query: 403 KCVLRNKTE 411
           KCVL  K +
Sbjct: 457 KCVLAAKND 465



 Score = 78.2 bits (191), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 33/59 (55%), Positives = 47/59 (79%)

Query: 113 RDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           RDKW L+ +FLK KGLVK H+DS+++F++VE+KK+++AN  + SD DP F L+Y DI V
Sbjct: 334 RDKWNLLPAFLKTKGLVKQHVDSYNHFVDVELKKIIKANRFVRSDFDPKFLLEYTDIRV 392


>gi|396477501|ref|XP_003840283.1| similar to DNA-directed rna polymerase III subunit [Leptosphaeria
            maculans JN3]
 gi|312216855|emb|CBX96804.1| similar to DNA-directed rna polymerase III subunit [Leptosphaeria
            maculans JN3]
          Length = 1257

 Score =  310 bits (795), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 153/261 (58%), Positives = 186/261 (71%), Gaps = 7/261 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ NRIDTL+Y +VY Q+PMV+++TI +T 
Sbjct: 802  GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLYLMVYPQQPMVKTRTIELTK 861

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+AVMSYSGYDIEDALI+NKAS DRGFGRC V +     LK Y N T DR
Sbjct: 862  YDKLPAGQNATVAVMSYSGYDIEDALILNKASCDRGFGRCQVLKKHVTPLKTYANGTSDR 921

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKE 1092
            I    L ++       H+A+  DGI   G +I      + KS+P  +      A+  YK+
Sbjct: 922  INAGALNSENPS----HQAIGLDGIAQVGARIEAGDAFLLKSIPQDTAGP---ASNIYKD 974

Query: 1093 VPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQ 1152
             P  YK    SY++K  ++ N     LIK+L+RQTRRPE+GDKFSSRHGQKG  GLIV+Q
Sbjct: 975  KPEKYKMPDCSYVDKACITENEAGTTLIKLLMRQTRRPELGDKFSSRHGQKGTTGLIVQQ 1034

Query: 1153 EDMPFNESGICPDIIMNPHGL 1173
            EDMPFN+ GI PDIIMNPHG 
Sbjct: 1035 EDMPFNDQGINPDIIMNPHGF 1055



 Score =  262 bits (669), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 118/191 (61%), Positives = 152/191 (79%)

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
            YK+ P  YK    SY++K  ++ N     LIK+L+RQTRRPE+GDKFSSRHGQKG  GLI
Sbjct: 972  YKDKPEKYKMPDCSYVDKACITENEAGTTLIKLLMRQTRRPELGDKFSSRHGQKGTTGLI 1031

Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
            V+QEDMPFN+ GI PDIIMNPHG+PSRMTVGK++ELL+GKAG++ G  + GTAFGG+++ 
Sbjct: 1032 VQQEDMPFNDQGINPDIIMNPHGFPSRMTVGKMMELLSGKAGVLRGTLEYGTAFGGSRVE 1091

Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
            D+ + L+ +G++Y GKD   SGITGEA + Y + GP+YYQKLKHMVQDK+H+R+RGPR +
Sbjct: 1092 DMSQVLVENGFSYTGKDYLTSGITGEAHQFYTFFGPIYYQKLKHMVQDKMHSRARGPRAI 1151

Query: 1362 LTRQPTGRRWK 1372
            LTRQPT  R +
Sbjct: 1152 LTRQPTEGRAR 1162



 Score =  201 bits (510), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 101/164 (61%), Positives = 124/164 (75%), Gaps = 3/164 (1%)

Query: 175 DKIIPKIKAAQ-FDIVNH--MRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSY 231
           DK++ K   AQ FD   H  + +  IT  +  AI TGNW+++RFKM+R GVT VLSRLSY
Sbjct: 518 DKVLKKQNRAQEFDAFTHFSVHKSQITMGIERAIATGNWSLKRFKMDRAGVTHVLSRLSY 577

Query: 232 ISGLGMMTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTE 291
           I+ LGMMTRI+SQFEKTRKVSGPR+LQ SQ+GMLC SDTPEGEACGLVKNLALMTHITTE
Sbjct: 578 IAALGMMTRISSQFEKTRKVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTE 637

Query: 292 NDEKNMLKIMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAGIT 335
           +DE+ + KI++ +G E I    GEE+ S G+Y V +NG    +T
Sbjct: 638 DDEEPVRKIIFLLGAEDICSQTGEEIHSEGIYSVCLNGTPIAVT 681



 Score =  162 bits (410), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 84/176 (47%), Positives = 107/176 (60%), Gaps = 27/176 (15%)

Query: 660 SQQYCDCPDGYSSG--CQPRPTFLNMHQFL----------GFKRFDDFLYEGKIEYLDVN 707
           +  +C+       G  C+P     N H  +          G   F+DFL  G +EYLD N
Sbjct: 709 NHDFCEVHVATDEGRICRPMIVVENQHSKVTSRYLKALRKGTMEFEDFLTRGLVEYLDTN 768

Query: 708 EGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAP 767
           E ND++IA+ E  I    TTHLEI PFT+LG  AG              L+PYPHHNQ+P
Sbjct: 769 EENDTNIALKEEDINQH-TTHLEIEPFTILGAVAG--------------LIPYPHHNQSP 813

Query: 768 RNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
           RNTYQCAMGKQA+G I YNQ NRIDTL+Y +VY Q+PMV+++TI +T + KLPAG+
Sbjct: 814 RNTYQCAMGKQAIGAIAYNQFNRIDTLLYLMVYPQQPMVKTRTIELTKYDKLPAGQ 869



 Score = 96.3 bits (238), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 41/79 (51%), Positives = 61/79 (77%)

Query: 455 DARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAG 514
           +A + LS+  + H+PV    ++ KA+Y+A+M RR+++A+ DP ++DDRDY GNKRLEL+G
Sbjct: 436 EAIECLSNVVLPHVPVEGTNYRPKALYIALMARRVLMAMQDPKLVDDRDYVGNKRLELSG 495

Query: 515 SLLSLMFEDVFKRFNSELK 533
            +LSL+FED FKRFN + K
Sbjct: 496 QMLSLLFEDHFKRFNHDFK 514



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/66 (60%), Positives = 53/66 (80%), Gaps = 1/66 (1%)

Query: 347 EESFNYTRQT-TPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCV 405
           E+  ++ R T TP+ECRLRD+TY+API VDI YTRG+ +V R+ + IGRMPIML+SSKCV
Sbjct: 214 EDDLDHHRSTITPNECRLRDMTYAAPIVVDIIYTRGNAKVKRTGIRIGRMPIMLKSSKCV 273

Query: 406 LRNKTE 411
           L  K++
Sbjct: 274 LAGKSD 279



 Score = 79.0 bits (193), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/59 (54%), Positives = 48/59 (81%)

Query: 113 RDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           RDKW L+ +FLK KGLVK H+DS+++F++VE+KK+++AN  + SD DP F L+Y+DI +
Sbjct: 148 RDKWNLLPAFLKTKGLVKQHVDSYNHFVDVELKKIIKANRFVRSDFDPKFLLEYVDIRI 206


>gi|121703239|ref|XP_001269884.1| DNA-directed rna polymerase III subunit [Aspergillus clavatus NRRL 1]
 gi|119398027|gb|EAW08458.1| DNA-directed rna polymerase III subunit [Aspergillus clavatus NRRL 1]
          Length = 1246

 Score =  310 bits (794), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 147/265 (55%), Positives = 192/265 (72%), Gaps = 6/265 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I  NQ  RID+++Y +VY Q+PMV+S+TI +T 
Sbjct: 780  GLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVYPQKPMVKSRTIELTK 839

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + +LPAGQNA +AVMSYSGYDIEDAL++NK S+DRGFGRC V+R     LK Y N T DR
Sbjct: 840  YDQLPAGQNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYVTNLKSYSNGTKDR 899

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTIS----VSAISMATP 1088
            +  P  E     P+ +H  L+ DG+ A GEQ+   +V +NKS P  S    + + +    
Sbjct: 900  LNPPTYENGA--PIRKHALLESDGLAAVGEQVNAGEVYINKSTPDQSHMSGIGSDAGRPI 957

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
            +Y   P++YK   P+Y++KV+ S    +  L+K+L+RQTRRPE+GDKFSSRHGQKGV+G+
Sbjct: 958  QYTPTPMTYKLHDPAYIDKVMYSVQENENQLVKVLVRQTRRPEVGDKFSSRHGQKGVVGI 1017

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            I +Q DMPF + GI PDIIMNPHG 
Sbjct: 1018 IADQADMPFTDLGINPDIIMNPHGF 1042



 Score =  261 bits (668), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 117/195 (60%), Positives = 154/195 (78%)

Query: 1178 RITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV 1237
            R  +Y   P++YK   P+Y++KV+ S    +  L+K+L+RQTRRPE+GDKFSSRHGQKGV
Sbjct: 955  RPIQYTPTPMTYKLHDPAYIDKVMYSVQENENQLVKVLVRQTRRPEVGDKFSSRHGQKGV 1014

Query: 1238 IGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGG 1297
            +G+I +Q DMPF + GI PDIIMNPHG+PSRMTVGK++EL+AGKAG++ G++  GT FGG
Sbjct: 1015 VGIIADQADMPFTDLGINPDIIMNPHGFPSRMTVGKMLELVAGKAGVLAGHHGYGTCFGG 1074

Query: 1298 TKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRG 1357
            T + +    LI HG+NY GK+   SGITGEAL  Y+++GP+YYQKLKHMVQDK+H+R+RG
Sbjct: 1075 TPVEETSRTLIAHGFNYGGKEYLTSGITGEALPFYVFTGPIYYQKLKHMVQDKMHSRARG 1134

Query: 1358 PRVVLTRQPTGRRWK 1372
            PR +LTRQPT  R +
Sbjct: 1135 PRAILTRQPTEGRSR 1149



 Score =  200 bits (509), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 104/205 (50%), Positives = 137/205 (66%), Gaps = 5/205 (2%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDI--VN 190
           +D  DY  N  ++   Q  A ++ D   LF     DI + I   +  + +A  FD   V 
Sbjct: 458 VDDRDYLGNKRLELAGQLLALLFED---LFKKFCFDIKMNIDKVLNKRNRAEAFDAWSVM 514

Query: 191 HMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRK 250
            M  + IT  +  AI TGNW+++RF+MER GVT VLSRLSYI+ LGMMTRI+SQFEKTRK
Sbjct: 515 SMHGNHITQGMNRAISTGNWSLKRFRMERAGVTHVLSRLSYIAALGMMTRISSQFEKTRK 574

Query: 251 VSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIA 310
           VSGPR+LQ SQ+GMLCP+DTPEGEACGLVKNLALMTHITT ++E  +  +++ +G E I 
Sbjct: 575 VSGPRALQPSQFGMLCPADTPEGEACGLVKNLALMTHITTNDEEGPIKNLVFMLGAEDIL 634

Query: 311 MFNGEELSSPGVYLVFVNGILAGIT 335
              G++L +PG Y + +NG    +T
Sbjct: 635 ALGGKQLYTPGSYTISINGTPIALT 659



 Score =  157 bits (396), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 77/136 (56%), Positives = 96/136 (70%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G  +FDDFL +G +EYLDVNE NDS IA+ E  I    TTHLEI PFT+LG  AG     
Sbjct: 727 GTMQFDDFLAQGLVEYLDVNEENDSLIAIYEDRIT-DTTTHLEIEPFTVLGAVAG----- 780

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQA+G I  NQ  RID+++Y +VY Q+PMV+
Sbjct: 781 ---------LIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVYPQKPMVK 831

Query: 808 SKTIRITNFHKLPAGK 823
           S+TI +T + +LPAG+
Sbjct: 832 SRTIELTKYDQLPAGQ 847



 Score =  104 bits (260), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 54/125 (43%), Positives = 84/125 (67%), Gaps = 8/125 (6%)

Query: 439 KLRQKRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDM 498
           K+ +K+  +Y++T + +A + ++S  I+HI V NM F+ KA+Y+A M RR+++A +DP +
Sbjct: 399 KINRKQM-SYRRTHIQEAVEAIASVIISHIEVKNMNFRPKAVYVAHMARRVLMAKNDPSL 457

Query: 499 LDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELKETNLSGVVN------LVSGWWFELK 552
           +DDRDY GNKRLELAG LL+L+FED+FK+F  ++K  N+  V+N          W     
Sbjct: 458 VDDRDYLGNKRLELAGQLLALLFEDLFKKFCFDIK-MNIDKVLNKRNRAEAFDAWSVMSM 516

Query: 553 YGNKI 557
           +GN I
Sbjct: 517 HGNHI 521



 Score = 91.7 bits (226), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 47/88 (53%), Positives = 56/88 (63%), Gaps = 4/88 (4%)

Query: 323 YLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGS 382
           Y+ F + I  G  C   E   P+      +    +PHECRLRD TY+API VD EY RG 
Sbjct: 173 YIKFTD-IYVGSPCRADE---PQDASLDAFPSSVSPHECRLRDTTYAAPILVDFEYIRGR 228

Query: 383 QRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
           QRV+R  + IGRMPIML+SSKCVL NKT
Sbjct: 229 QRVIRRGVSIGRMPIMLRSSKCVLANKT 256



 Score = 79.3 bits (194), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/60 (55%), Positives = 50/60 (83%)

Query: 113 RDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           +DKW L+ +FLK KGLVK HIDS++YFI V++KK++++++ I SD+D  FY+K+ DI+VG
Sbjct: 123 KDKWNLLPAFLKVKGLVKQHIDSYNYFIEVQLKKIVESSSTIRSDIDHNFYIKFTDIYVG 182


>gi|70990294|ref|XP_749996.1| DNA-directed RNA polymerase III, beta subunit [Aspergillus fumigatus
            Af293]
 gi|66847628|gb|EAL87958.1| DNA-directed RNA polymerase III, beta subunit, putative [Aspergillus
            fumigatus Af293]
 gi|159130477|gb|EDP55590.1| DNA-directed RNA polymerase III, beta subunit, putative [Aspergillus
            fumigatus A1163]
          Length = 1200

 Score =  309 bits (792), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 147/265 (55%), Positives = 192/265 (72%), Gaps = 6/265 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I  NQ  RID+++Y +VY Q+PMV+S+TI +  
Sbjct: 734  GLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVYPQKPMVKSRTIELVK 793

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + +LPAGQNA +AVMSYSGYDIEDAL++NK S+DRGFGRC V+R     LK Y N T DR
Sbjct: 794  YDQLPAGQNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYVTNLKSYSNGTKDR 853

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTIS----VSAISMATP 1088
            +  P  E     P+ +H  L+ DG+ A GEQ+   +V +NKS P  S    + + +    
Sbjct: 854  LNPPTYENGA--PIRKHALLEADGLAAVGEQVNAGEVYINKSTPEQSNLSGIGSDAGRPV 911

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
            +Y   P++YK   P+Y++KV+ S    +  L+K+L+RQTRRPE+GDKFSSRHGQKGV+G+
Sbjct: 912  QYTPTPMTYKLHDPAYIDKVMYSVQENENQLVKVLVRQTRRPEVGDKFSSRHGQKGVVGI 971

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            I +Q DMPF +SGI PDIIMNPHG 
Sbjct: 972  IADQVDMPFTDSGINPDIIMNPHGF 996



 Score =  262 bits (670), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 118/195 (60%), Positives = 155/195 (79%)

Query: 1178 RITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV 1237
            R  +Y   P++YK   P+Y++KV+ S    +  L+K+L+RQTRRPE+GDKFSSRHGQKGV
Sbjct: 909  RPVQYTPTPMTYKLHDPAYIDKVMYSVQENENQLVKVLVRQTRRPEVGDKFSSRHGQKGV 968

Query: 1238 IGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGG 1297
            +G+I +Q DMPF +SGI PDIIMNPHG+PSRMTVGK++EL+AGKAG++ G++  GT FGG
Sbjct: 969  VGIIADQVDMPFTDSGINPDIIMNPHGFPSRMTVGKMLELVAGKAGVLAGHHGYGTCFGG 1028

Query: 1298 TKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRG 1357
            T + +    LI HG++Y GKD   SGITGEAL  Y+++GP+YYQKLKHMVQDK+H+R+RG
Sbjct: 1029 TPVEEASRVLIDHGFSYGGKDYLTSGITGEALPFYVFTGPIYYQKLKHMVQDKMHSRARG 1088

Query: 1358 PRVVLTRQPTGRRWK 1372
            PR +LTRQPT  R +
Sbjct: 1089 PRAILTRQPTEGRSR 1103



 Score =  202 bits (513), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 105/205 (51%), Positives = 137/205 (66%), Gaps = 5/205 (2%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFD--IVN 190
           +D  DY  N  ++   Q  A ++ D   LF     DI + I   +  + +A QFD   V 
Sbjct: 412 VDDRDYLGNKRLELAGQLLALLFED---LFKKFCFDIKMNIDKVLNKRNRAEQFDAWTVM 468

Query: 191 HMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRK 250
            M  + IT  +  AI TGNW+++RF+MER GVT VLSRLSYI+ LGMMTRI+SQFEKTRK
Sbjct: 469 SMHSNHITQGMNRAISTGNWSLKRFRMERAGVTHVLSRLSYIAALGMMTRISSQFEKTRK 528

Query: 251 VSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIA 310
           VSGPR+LQ SQ+GMLCP+DTPEGEACGLVKNLALMTHITT ++E  +  +++ +G E I 
Sbjct: 529 VSGPRALQPSQFGMLCPADTPEGEACGLVKNLALMTHITTNDEEGPIKNLVFMLGAEDIM 588

Query: 311 MFNGEELSSPGVYLVFVNGILAGIT 335
              G++L  PG Y + +NG    +T
Sbjct: 589 ALGGKQLYIPGSYTISINGTPIALT 613



 Score =  154 bits (390), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 76/136 (55%), Positives = 95/136 (69%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G  +FDDFL +G +EYLDVNE NDS IA+ E  I    TTHLEI PFT+LG  AG     
Sbjct: 681 GTMQFDDFLAQGLVEYLDVNEENDSLIALYEKDIT-DTTTHLEIEPFTVLGAVAG----- 734

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQA+G I  NQ  RID+++Y +VY Q+PMV+
Sbjct: 735 ---------LIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVYPQKPMVK 785

Query: 808 SKTIRITNFHKLPAGK 823
           S+TI +  + +LPAG+
Sbjct: 786 SRTIELVKYDQLPAGQ 801



 Score =  103 bits (257), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 48/100 (48%), Positives = 76/100 (76%), Gaps = 1/100 (1%)

Query: 443 KRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDR 502
           ++  +Y++T + +A + ++S  I+HI V NM F+ KA+Y+A M RR+++A +DP ++DDR
Sbjct: 356 RKQSSYRRTHIQEAVEAIASVIISHIEVKNMNFRPKAVYVAHMARRVLMAKNDPSLVDDR 415

Query: 503 DYYGNKRLELAGSLLSLMFEDVFKRFNSELKETNLSGVVN 542
           DY GNKRLELAG LL+L+FED+FK+F  ++K  N+  V+N
Sbjct: 416 DYLGNKRLELAGQLLALLFEDLFKKFCFDIK-MNIDKVLN 454



 Score = 86.7 bits (213), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 39/54 (72%), Positives = 44/54 (81%)

Query: 357 TPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
           +PHECRLRD TY+API V+ EY RG QRV R  + IGRMPIML+SSKCVL NKT
Sbjct: 157 SPHECRLRDTTYAAPILVNFEYIRGRQRVTRKGVSIGRMPIMLRSSKCVLANKT 210



 Score = 79.7 bits (195), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/60 (55%), Positives = 50/60 (83%)

Query: 113 RDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           +DKW L+ +FLK KGLVK HIDS++YFI V++KK++++++ I SD+D  FY+K+ DI+VG
Sbjct: 77  KDKWNLLPAFLKVKGLVKQHIDSYNYFIEVQLKKIVESSSTIRSDIDHTFYIKFTDIYVG 136


>gi|119497281|ref|XP_001265400.1| DNA-directed rna polymerase III subunit [Neosartorya fischeri NRRL
            181]
 gi|119413562|gb|EAW23503.1| DNA-directed rna polymerase III subunit [Neosartorya fischeri NRRL
            181]
          Length = 1200

 Score =  309 bits (792), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 146/265 (55%), Positives = 192/265 (72%), Gaps = 6/265 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I  NQ  RID+++Y +VY Q+PMV+S+TI +  
Sbjct: 734  GLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVYPQKPMVKSRTIELVK 793

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + +LPAGQNA +AVMSYSGYDIEDAL++NK S+DRGFGRC V+R     LK Y N T DR
Sbjct: 794  YDQLPAGQNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYVTNLKSYSNGTKDR 853

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTIS----VSAISMATP 1088
            +  P  E     P+ +H  L+ DG+ A GEQ+   +V +NKS P  S    + + +    
Sbjct: 854  LNPPTYENGA--PIRKHALLEADGLAAVGEQVNAGEVYINKSTPEQSNLSGIGSDAGRPV 911

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
            +Y   P++YK   P+Y++KV+ S    +  L+K+L+RQTRRPE+GDKFSSRHGQKGV+G+
Sbjct: 912  QYTPTPMTYKLHDPAYIDKVMYSVQENENQLVKVLVRQTRRPEVGDKFSSRHGQKGVVGI 971

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            I +Q DMPF ++GI PDIIMNPHG 
Sbjct: 972  IADQADMPFTDAGINPDIIMNPHGF 996



 Score =  261 bits (668), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 117/195 (60%), Positives = 155/195 (79%)

Query: 1178 RITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV 1237
            R  +Y   P++YK   P+Y++KV+ S    +  L+K+L+RQTRRPE+GDKFSSRHGQKGV
Sbjct: 909  RPVQYTPTPMTYKLHDPAYIDKVMYSVQENENQLVKVLVRQTRRPEVGDKFSSRHGQKGV 968

Query: 1238 IGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGG 1297
            +G+I +Q DMPF ++GI PDIIMNPHG+PSRMTVGK++EL+AGKAG++ G++  GT FGG
Sbjct: 969  VGIIADQADMPFTDAGINPDIIMNPHGFPSRMTVGKMLELVAGKAGVLAGHHGYGTCFGG 1028

Query: 1298 TKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRG 1357
            T + +    LI HG++Y GKD   SGITGEAL  Y+++GP+YYQKLKHMVQDK+H+R+RG
Sbjct: 1029 TPVEEASRILIDHGFSYGGKDYLTSGITGEALPFYVFTGPIYYQKLKHMVQDKMHSRARG 1088

Query: 1358 PRVVLTRQPTGRRWK 1372
            PR +LTRQPT  R +
Sbjct: 1089 PRAILTRQPTEGRSR 1103



 Score =  203 bits (517), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 105/205 (51%), Positives = 138/205 (67%), Gaps = 5/205 (2%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFD--IVN 190
           +D  DY  N  ++   Q  A ++ D   LF     DI + I   +  + +A QFD   V 
Sbjct: 412 VDDRDYLGNKRLELAGQLLALLFED---LFKKFCFDIKMNIDKVLNKRNRAEQFDAWTVM 468

Query: 191 HMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRK 250
            M  + IT  +  AI TGNW+++RF+MER GVT VLSRLSYI+ LGMMTRI+SQFEKTRK
Sbjct: 469 SMHSNHITQGMNRAISTGNWSLKRFRMERAGVTHVLSRLSYIAALGMMTRISSQFEKTRK 528

Query: 251 VSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIA 310
           VSGPR+LQ SQ+GMLCP+DTPEGEACGLVKNLALMTHITT ++E  +  +++ +G E I 
Sbjct: 529 VSGPRALQPSQFGMLCPADTPEGEACGLVKNLALMTHITTNDEEGPIKNLVFMLGAEDIM 588

Query: 311 MFNGEELSSPGVYLVFVNGILAGIT 335
              G++L +PG Y + +NG    +T
Sbjct: 589 ALGGKQLYTPGSYTISINGTPIALT 613



 Score =  154 bits (390), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 76/136 (55%), Positives = 95/136 (69%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G  +FDDFL +G +EYLDVNE NDS IA+ E  I    TTHLEI PFT+LG  AG     
Sbjct: 681 GTMQFDDFLAQGLVEYLDVNEENDSLIALYEKDIT-DTTTHLEIEPFTVLGAVAG----- 734

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQA+G I  NQ  RID+++Y +VY Q+PMV+
Sbjct: 735 ---------LIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVYPQKPMVK 785

Query: 808 SKTIRITNFHKLPAGK 823
           S+TI +  + +LPAG+
Sbjct: 786 SRTIELVKYDQLPAGQ 801



 Score =  103 bits (257), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 48/100 (48%), Positives = 76/100 (76%), Gaps = 1/100 (1%)

Query: 443 KRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDR 502
           ++  +Y++T + +A + ++S  I+HI V NM F+ KA+Y+A M RR+++A +DP ++DDR
Sbjct: 356 RKQSSYRRTHIQEAVEAIASVIISHIEVKNMNFRPKAVYVAHMARRVLMAKNDPSLVDDR 415

Query: 503 DYYGNKRLELAGSLLSLMFEDVFKRFNSELKETNLSGVVN 542
           DY GNKRLELAG LL+L+FED+FK+F  ++K  N+  V+N
Sbjct: 416 DYLGNKRLELAGQLLALLFEDLFKKFCFDIK-MNIDKVLN 454



 Score = 86.7 bits (213), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 39/54 (72%), Positives = 44/54 (81%)

Query: 357 TPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
           +PHECRLRD TY+API V+ EY RG QRV R  + IGRMPIML+SSKCVL NKT
Sbjct: 157 SPHECRLRDTTYAAPILVNFEYIRGRQRVTRKGVSIGRMPIMLRSSKCVLANKT 210



 Score = 79.7 bits (195), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 33/60 (55%), Positives = 50/60 (83%)

Query: 113 RDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           +DKW L+ +FLK KGLVK HIDS++YFI V++KK++++++ I SD+D  FY+K+ DI+VG
Sbjct: 77  KDKWNLLPAFLKVKGLVKQHIDSYNYFIEVQLKKIVESSSTIRSDIDHTFYIKFTDIYVG 136


>gi|356495051|ref|XP_003516394.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Glycine
            max]
          Length = 1166

 Score =  309 bits (792), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 148/266 (55%), Positives = 191/266 (71%), Gaps = 8/266 (3%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG I +NQ  R+D+L+Y LVY QRP++ +KTI +  
Sbjct: 696  GLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLRRMDSLLYLLVYPQRPLLTTKTIELVG 755

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KL AGQNAT+AVMSYSGYDIEDA++MNKASLDRGFGRC+V +    +++++ N T DR
Sbjct: 756  YDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVMKKYNAIIQKHSNDTSDR 815

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISV-----SAISMAT 1087
            IL P   ADT     R + LD DGI APGE +    + +NK  P  +      SA ++  
Sbjct: 816  ILRPNRTADT---AGRMQILDDDGIAAPGEILRPYDIYINKQSPIDTRTPKTGSAANLPD 872

Query: 1088 PEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
              Y+    S+KG+    +++V++ S+ ++   IK L+R TRRPE+GDKFSSRHGQKGV G
Sbjct: 873  SAYRSNAQSFKGNGGEVVDRVVLCSDKDNNMCIKFLIRHTRRPELGDKFSSRHGQKGVCG 932

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
             IV QED PF+E GICPD+IMNPHG 
Sbjct: 933  TIVPQEDFPFSEKGICPDLIMNPHGF 958



 Score =  244 bits (623), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 115/198 (58%), Positives = 146/198 (73%), Gaps = 5/198 (2%)

Query: 1180 TEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1239
            + Y+    S+KG+    +++V++ S+ ++   IK L+R TRRPE+GDKFSSRHGQKGV G
Sbjct: 873  SAYRSNAQSFKGNGGEVVDRVVLCSDKDNNMCIKFLIRHTRRPELGDKFSSRHGQKGVCG 932

Query: 1240 LIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFG--- 1296
             IV QED PF+E GICPD+IMNPHG+PSRMTVGK+IELL GKAG+  G +  G+AFG   
Sbjct: 933  TIVPQEDFPFSEKGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGERS 992

Query: 1297 --GTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHAR 1354
                K+  + E L+  G+NY GKD  YSGITG  L+AYI+ GP+YYQKLKHMV DK+HAR
Sbjct: 993  GHADKVETISETLVSKGFNYSGKDFIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHAR 1052

Query: 1355 SRGPRVVLTRQPTGRRWK 1372
              GPRV+LTRQPT  R +
Sbjct: 1053 GSGPRVMLTRQPTEGRAR 1070



 Score =  185 bits (469), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 98/210 (46%), Positives = 136/210 (64%), Gaps = 9/210 (4%)

Query: 128 LVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV-GIADKIIPK-IKAAQ 185
           L K  +D  DY  N  ++   Q  + ++ D+      K +   V  + DK++ K  KA  
Sbjct: 369 LNKDAMDDKDYVGNKRLELSGQLISLLFEDL-----FKSMTTEVKNLTDKMLDKPDKAKN 423

Query: 186 FDIVNHMRQ--DTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           FDI   + +    IT  L   + TGN+ I+RF+MER+G+TQVL RLS+I  LG MTR++ 
Sbjct: 424 FDICTLLTRTRSIITLGLERTLSTGNFEIKRFRMERKGMTQVLQRLSFIGALGHMTRVSP 483

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
           QFEK+RKVSGPR+LQ SQWGMLCP DTPEGE+CGLVKNLALMTH+TT+ +EK ++ + Y+
Sbjct: 484 QFEKSRKVSGPRALQPSQWGMLCPCDTPEGESCGLVKNLALMTHVTTDEEEKPLISLFYS 543

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAG 333
           + +  I     EEL +P  +LV  NG++ G
Sbjct: 544 LDVARIEHLFAEELHTPDSFLVIFNGLILG 573



 Score =  149 bits (377), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 75/136 (55%), Positives = 94/136 (69%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G   FDDFL +G +EYLDVNE N++ IA+ E G     TTH+EI PFT+LGV AG     
Sbjct: 643 GVCTFDDFLRDGLLEYLDVNEENNALIALYE-GDATSETTHIEIEPFTILGVIAG----- 696

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQAMG I +NQ  R+D+L+Y LVY QRP++ 
Sbjct: 697 ---------LIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLRRMDSLLYLLVYPQRPLLT 747

Query: 808 SKTIRITNFHKLPAGK 823
           +KTI +  + KL AG+
Sbjct: 748 TKTIELVGYDKLGAGQ 763



 Score = 80.9 bits (198), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 36/74 (48%), Positives = 55/74 (74%)

Query: 460 LSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGSLLSL 519
           L    +A++PV    F+ K +Y+AVM+RR++ A+ + D +DD+DY GNKRLEL+G L+SL
Sbjct: 335 LRDVFLANVPVDQDNFQKKCIYVAVMMRRIMDAILNKDAMDDKDYVGNKRLELSGQLISL 394

Query: 520 MFEDVFKRFNSELK 533
           +FED+FK   +E+K
Sbjct: 395 LFEDLFKSMTTEVK 408



 Score = 63.9 bits (154), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 48/68 (70%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGI 173
           DK++L+  FLK +GLVK H+DSF+YF+  +IKK+++AN  I +   P  YL++L++ +G 
Sbjct: 46  DKFQLIPEFLKVRGLVKQHLDSFNYFVRTDIKKIVRANNLIMASRYPHIYLRFLNVGIGK 105

Query: 174 ADKIIPKI 181
              +I ++
Sbjct: 106 PSMMIDEV 113



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/98 (41%), Positives = 51/98 (52%), Gaps = 19/98 (19%)

Query: 320 PGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYT 379
           P +YL F+N  +   +    EV           T   TP  CRL DLTY+API  D+EYT
Sbjct: 92  PHIYLRFLNVGIGKPSMMIDEV-----------TEGLTPQTCRLSDLTYAAPICADVEYT 140

Query: 380 RGS------QRVVRSDLVIGRMPIMLQSSKCVLRNKTE 411
             S      +R +R +  IGRMPIML+S  CVL  K E
Sbjct: 141 LRSHDKPDNKRTLRVE--IGRMPIMLRSCCCVLHGKDE 176


>gi|449523027|ref|XP_004168526.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc2-like, partial
            [Cucumis sativus]
          Length = 750

 Score =  309 bits (791), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 151/265 (56%), Positives = 191/265 (72%), Gaps = 7/265 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG I YNQ  R+DTL+Y LVY QRP++ +KTI +  
Sbjct: 297  GLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLRRMDTLLYLLVYPQRPLLTTKTIELVG 356

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KL AGQNAT+AVMSYSGYDIEDA++MNK+SLDRGFGRC+V++    V ++Y N T DR
Sbjct: 357  YDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVFKKYSSVNQKYENNTADR 416

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPE--Y 1090
            I+ P    D    +   + LD DG+ APGE I    + VNK  P I+  +     P+  Y
Sbjct: 417  IVRPNRNEDFTGNM---QILDDDGLAAPGEIIRPNDIYVNKQSPIITKGSPLPGIPDNAY 473

Query: 1091 KEVPVSYKGS--VPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
            +     +KGS   P+ +++V +S++  D   IK L+RQTRRPE+GDKFSSRHGQKGV G 
Sbjct: 474  RPCRQIFKGSEGEPTVVDRVALSTDKNDCLCIKFLIRQTRRPELGDKFSSRHGQKGVCGT 533

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            IV+QED PF+E GICPD+IMNPHG 
Sbjct: 534  IVQQEDFPFSERGICPDLIMNPHGF 558



 Score =  245 bits (625), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 117/191 (61%), Positives = 146/191 (76%), Gaps = 7/191 (3%)

Query: 1189 YKGSV--PSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQED 1246
            +KGS   P+ +++V +S++  D   IK L+RQTRRPE+GDKFSSRHGQKGV G IV+QED
Sbjct: 480  FKGSEGEPTVVDRVALSTDKNDCLCIKFLIRQTRRPELGDKFSSRHGQKGVCGTIVQQED 539

Query: 1247 MPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFG-----GTKLV 1301
             PF+E GICPD+IMNPHG+PSRMTVGK+IELL GKAG+  G +  G+AFG       K+ 
Sbjct: 540  FPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADKVD 599

Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
             + E LI+ G++Y GKD  YSGITG  L+AYI+ GP+YYQKLKHMV DK+HAR  GPRV+
Sbjct: 600  AISETLIKRGFSYNGKDFLYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVM 659

Query: 1362 LTRQPTGRRWK 1372
            LTRQPT  R +
Sbjct: 660  LTRQPTEGRAR 670



 Score =  188 bits (477), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 83/160 (51%), Positives = 121/160 (75%), Gaps = 1/160 (0%)

Query: 175 DKIIPK-IKAAQFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYIS 233
           DK++ K  ++++FD   H+  + I+  L   + TGNW ++RF+M R+G++QVL+RLS+IS
Sbjct: 15  DKLLGKHSRSSRFDFSQHLNSNIISFGLERTLSTGNWDVKRFRMHRKGMSQVLARLSFIS 74

Query: 234 GLGMMTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTEND 293
            +G +TR++ QFEK+RKVSGPR+LQ SQWGMLCP DTPEGEACGLVKNLALMTH+TT+ +
Sbjct: 75  TMGHVTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDQE 134

Query: 294 EKNMLKIMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAG 333
           E  ++ + Y +G+E + + + EEL +P  +LV  NG + G
Sbjct: 135 EGPLISLCYCLGVEDLELLSAEELHTPNSFLVIFNGRILG 174



 Score =  155 bits (391), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 78/136 (57%), Positives = 95/136 (69%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G + FDDFL +G IEYLDVNE N++ IA+ E    P  TTH+EI PFT+LGV AG     
Sbjct: 244 GVRTFDDFLRDGLIEYLDVNEENNALIALYEGEATP-ETTHIEIEPFTILGVVAG----- 297

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQAMG I YNQ  R+DTL+Y LVY QRP++ 
Sbjct: 298 ---------LIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLRRMDTLLYLLVYPQRPLLT 348

Query: 808 SKTIRITNFHKLPAGK 823
           +KTI +  + KL AG+
Sbjct: 349 TKTIELVGYDKLGAGQ 364


>gi|356520824|ref|XP_003529060.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Glycine
            max]
          Length = 1152

 Score =  309 bits (791), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 148/266 (55%), Positives = 191/266 (71%), Gaps = 8/266 (3%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG I +NQ  R+D+L+Y LVY QRP++ +KTI +  
Sbjct: 682  GLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLRRMDSLLYLLVYPQRPLLTTKTIELVG 741

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KL AGQNAT+AVMSYSGYDIEDA++MNKASLDRGFGRC+V +    +++++ N T DR
Sbjct: 742  YDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVMKKYNAIIQKHSNDTSDR 801

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISV-----SAISMAT 1087
            IL P   ADT     R + LD DGI APGE +    + +NK  P  +      SA ++  
Sbjct: 802  ILRPNRTADT---AGRMQILDDDGIAAPGEILRPYDIYINKQSPIDTRTPKTGSAANLPD 858

Query: 1088 PEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
              Y+    S+KG+    +++V++ S+ ++   IK L+R TRRPE+GDKFSSRHGQKGV G
Sbjct: 859  SAYRSNAQSFKGNGGEVVDRVVLCSDKDNNMCIKFLIRHTRRPELGDKFSSRHGQKGVCG 918

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
             IV QED PF+E GICPD+IMNPHG 
Sbjct: 919  TIVPQEDFPFSEKGICPDLIMNPHGF 944



 Score =  244 bits (622), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 115/198 (58%), Positives = 146/198 (73%), Gaps = 5/198 (2%)

Query: 1180 TEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1239
            + Y+    S+KG+    +++V++ S+ ++   IK L+R TRRPE+GDKFSSRHGQKGV G
Sbjct: 859  SAYRSNAQSFKGNGGEVVDRVVLCSDKDNNMCIKFLIRHTRRPELGDKFSSRHGQKGVCG 918

Query: 1240 LIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFG--- 1296
             IV QED PF+E GICPD+IMNPHG+PSRMTVGK+IELL GKAG+  G +  G+AFG   
Sbjct: 919  TIVPQEDFPFSEKGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGERS 978

Query: 1297 --GTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHAR 1354
                K+  + E L+  G+NY GKD  YSGITG  L+AYI+ GP+YYQKLKHMV DK+HAR
Sbjct: 979  GHADKVETISETLVSKGFNYSGKDFIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHAR 1038

Query: 1355 SRGPRVVLTRQPTGRRWK 1372
              GPRV+LTRQPT  R +
Sbjct: 1039 GSGPRVMLTRQPTEGRAR 1056



 Score =  185 bits (470), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 98/210 (46%), Positives = 138/210 (65%), Gaps = 9/210 (4%)

Query: 128 LVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV-GIADKIIPK-IKAAQ 185
           L K  +D  DY  N  ++   Q  + ++ D+      K +   V  + DK++ K  KA  
Sbjct: 355 LNKDAMDDKDYVGNKRLELSGQLISLLFEDL-----FKSMTTEVKNLTDKMLEKPDKAKN 409

Query: 186 FDIVNHMRQ--DTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           FDI   + +    IT  L   + TGN+ I+RF+MER+G+TQVL RLS+I  LG MTR++ 
Sbjct: 410 FDICTLLTRTRSIITLGLERTLSTGNFEIKRFRMERKGMTQVLQRLSFIGALGHMTRVSP 469

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
           QFEK+RKVSGPR+LQ SQWGMLCP DTPEGE+CGLVKNLALMTH+TT+ +EK ++ +  +
Sbjct: 470 QFEKSRKVSGPRALQPSQWGMLCPCDTPEGESCGLVKNLALMTHVTTDEEEKPLISLCES 529

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAG 333
           +G+E +   + EEL +P  +LV  NG++ G
Sbjct: 530 LGVEDMKDLSAEELHTPDSFLVIFNGLILG 559



 Score =  151 bits (382), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 75/136 (55%), Positives = 95/136 (69%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G + FDDFL +G +EYLDVNE N++ IA+ E G     TTH+EI PFT+LGV AG     
Sbjct: 629 GVRTFDDFLRDGLLEYLDVNEENNALIALYE-GDATSETTHIEIEPFTILGVIAG----- 682

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQAMG I +NQ  R+D+L+Y LVY QRP++ 
Sbjct: 683 ---------LIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLRRMDSLLYLLVYPQRPLLT 733

Query: 808 SKTIRITNFHKLPAGK 823
           +KTI +  + KL AG+
Sbjct: 734 TKTIELVGYDKLGAGQ 749



 Score = 80.5 bits (197), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 36/74 (48%), Positives = 55/74 (74%)

Query: 460 LSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGSLLSL 519
           L    +A++PV    F+ K +Y+AVM+RR++ A+ + D +DD+DY GNKRLEL+G L+SL
Sbjct: 321 LRDVFLANVPVDQDNFRPKCIYVAVMMRRIMDAILNKDAMDDKDYVGNKRLELSGQLISL 380

Query: 520 MFEDVFKRFNSELK 533
           +FED+FK   +E+K
Sbjct: 381 LFEDLFKSMTTEVK 394



 Score = 63.9 bits (154), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 43/98 (43%), Positives = 53/98 (54%), Gaps = 19/98 (19%)

Query: 320 PGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYT 379
           P +YL F+N    GI        KP I      T   TP  CRL DLTY+API  D+EYT
Sbjct: 91  PHIYLRFLN---VGIG-------KPSIMID-EVTEDLTPQTCRLSDLTYAAPICADVEYT 139

Query: 380 RGS------QRVVRSDLVIGRMPIMLQSSKCVLRNKTE 411
            GS      +R ++ +  IGRMPIML+S  CVL  + E
Sbjct: 140 LGSHDKPDIKRKLKVE--IGRMPIMLRSCCCVLHGRDE 175



 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 48/68 (70%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGI 173
           DK++L+  FLK +GLVK H+DSF+YF+  +IKK+++AN  I +   P  YL++L++ +G 
Sbjct: 45  DKFQLLPEFLKVRGLVKQHLDSFNYFVRTDIKKIVRANDLIVASRYPHIYLRFLNVGIGK 104

Query: 174 ADKIIPKI 181
              +I ++
Sbjct: 105 PSIMIDEV 112


>gi|308799767|ref|XP_003074664.1| RNA polymerase III subunit RPC2 (ISS) [Ostreococcus tauri]
 gi|116000835|emb|CAL50515.1| RNA polymerase III subunit RPC2 (ISS) [Ostreococcus tauri]
          Length = 2569

 Score =  309 bits (791), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 154/268 (57%), Positives = 194/268 (72%), Gaps = 9/268 (3%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            G++PYPHHNQ+PRNTYQCAMGKQAMG I +NQ NR+DTLMY LVY Q+P+V++KTI +  
Sbjct: 708  GIIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLNRMDTLMYLLVYPQKPIVKTKTIELIG 767

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + +L AGQNATIAVMSYSGYDIEDA++MN+ASLDRGFGRC V R     +K+Y N+T DR
Sbjct: 768  YDRLGAGQNATIAVMSYSGYDIEDAIVMNRASLDRGFGRCTVLRKYSTQVKKYSNRTMDR 827

Query: 1033 ILGPLLEADTRKPVY-RHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAIS----MAT 1087
            I+GP  + D R     R+  LD DGI A G +I    + VNK  P  +   ++    M  
Sbjct: 828  IIGP--KEDQRANENGRYHLLDGDGIAAVGGRIKPGDIYVNKQSPINTRDPMANPHGMPD 885

Query: 1088 PEYKEVPVSYKG--SVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV 1145
              Y+  P+SYKG     + ++KVL++   E  F IK L+RQTRRPE+GDKFSSRHGQKGV
Sbjct: 886  TMYRSNPLSYKGPPGETAIVDKVLLTMTDEGQFNIKTLVRQTRRPEVGDKFSSRHGQKGV 945

Query: 1146 IGLIVEQEDMPFNESGICPDIIMNPHGL 1173
             G+I++QED PF+E GI PD+IMNPHG 
Sbjct: 946  CGVILDQEDFPFSERGITPDLIMNPHGF 973



 Score =  266 bits (681), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 126/208 (60%), Positives = 160/208 (76%), Gaps = 6/208 (2%)

Query: 1165 DIIMNPHGLKGCDRITEYKEVPVSYKG--SVPSYLEKVLVSSNSEDAFLIKMLLRQTRRP 1222
            D + NPHG+      T Y+  P+SYKG     + ++KVL++   E  F IK L+RQTRRP
Sbjct: 875  DPMANPHGMPD----TMYRSNPLSYKGPPGETAIVDKVLLTMTDEGQFNIKTLVRQTRRP 930

Query: 1223 EIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKA 1282
            E+GDKFSSRHGQKGV G+I++QED PF+E GI PD+IMNPHG+PSRMTVGK+IELL GKA
Sbjct: 931  EVGDKFSSRHGQKGVCGVILDQEDFPFSERGITPDLIMNPHGFPSRMTVGKMIELLGGKA 990

Query: 1283 GLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQK 1342
            GL  G + +GTAF G  +  +Q+ L+  G++++GKD+ + GITGEALE  ++ GPVYYQK
Sbjct: 991  GLENGRFHDGTAFAGDSVEAIQQTLVEAGFSHKGKDMLHCGITGEALEVNVFMGPVYYQK 1050

Query: 1343 LKHMVQDKIHARSRGPRVVLTRQPTGRR 1370
            LKHMVQDK+HAR+RGPRVVLTRQPT  R
Sbjct: 1051 LKHMVQDKMHARARGPRVVLTRQPTEGR 1078



 Score =  219 bits (559), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 111/211 (52%), Positives = 150/211 (71%), Gaps = 8/211 (3%)

Query: 127 GLVKP-HIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG-IADKIIPKI-KA 183
            L+ P  +D  DY+ N  ++   Q  A ++ D       K L+  +   AD ++ K  +A
Sbjct: 383 ALLDPTQVDDKDYYGNKRLELAGQLIALLFEDC-----FKRLNADLKRQADAVLSKANRA 437

Query: 184 AQFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
            QFDI+  +RQDT++N L  AI +GNWT++RF+MER+GVTQVLSRLS+IS LGMMTRI S
Sbjct: 438 TQFDILKCIRQDTLSNGLEHAISSGNWTVKRFRMERKGVTQVLSRLSFISALGMMTRITS 497

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
           QFEKTRKVSGPR+LQ SQWGMLCPSDTPEGE+CGLVKNLALMTH+TT+++E+ + ++ + 
Sbjct: 498 QFEKTRKVSGPRALQPSQWGMLCPSDTPEGESCGLVKNLALMTHVTTDDEEEPLRRLAHA 557

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
           +G+E +   N  E+ SP    V +NG L G+
Sbjct: 558 LGVEPLTWLNAGEMHSPQGAHVLMNGSLLGV 588



 Score =  164 bits (416), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 81/136 (59%), Positives = 98/136 (72%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G + F DFL EG +EYLDVNE NDS+IA+ E  +    TTHLEI PFTLLGVCAGI    
Sbjct: 655 GHRTFTDFLREGLVEYLDVNEENDSYIALYEDEMNEE-TTHLEIEPFTLLGVCAGI---- 709

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                     +PYPHHNQ+PRNTYQCAMGKQAMG I +NQ NR+DTLMY LVY Q+P+V+
Sbjct: 710 ----------IPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLNRMDTLMYLLVYPQKPIVK 759

Query: 808 SKTIRITNFHKLPAGK 823
           +KTI +  + +L AG+
Sbjct: 760 TKTIELIGYDRLGAGQ 775



 Score =  112 bits (280), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 46/88 (52%), Positives = 69/88 (78%)

Query: 446 QTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYY 505
           +TY ++ +D+ARD L+   +AH+PV+   F+ K  Y+++M+RR++ AL DP  +DD+DYY
Sbjct: 337 RTYGRSRIDEARDILAGVVLAHVPVVAYDFRQKCAYISIMVRRILNALLDPTQVDDKDYY 396

Query: 506 GNKRLELAGSLLSLMFEDVFKRFNSELK 533
           GNKRLELAG L++L+FED FKR N++LK
Sbjct: 397 GNKRLELAGQLIALLFEDCFKRLNADLK 424



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/100 (45%), Positives = 60/100 (60%), Gaps = 17/100 (17%)

Query: 318 SSPGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIE 377
           S P  YL + N            V +P +EE +    + TP +CRLRD+TY+APITVD+E
Sbjct: 94  SDPNFYLKYTN----------IHVGRPSVEEDY-VVEEITPQQCRLRDMTYAAPITVDVE 142

Query: 378 YTRGSQRVVRSD------LVIGRMPIMLQSSKCVLRNKTE 411
           YTRG + V R        +VIGR+P+ML+SS+CVL  K E
Sbjct: 143 YTRGKEIVTRQQKNGVGGIVIGRIPLMLRSSRCVLTGKNE 182



 Score = 75.9 bits (185), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/63 (55%), Positives = 49/63 (77%), Gaps = 2/63 (3%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANAN--IYSDVDPLFYLKYLDI 169
           + DK++L+ +FLK +GLV+ HIDSF+Y +N EIKK+++A AN  +  D DP FYLKY +I
Sbjct: 46  LEDKFELLPAFLKVRGLVRQHIDSFNYLVNEEIKKIVRAKANERVTCDSDPNFYLKYTNI 105

Query: 170 HVG 172
           HVG
Sbjct: 106 HVG 108


>gi|449447799|ref|XP_004141655.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Cucumis
            sativus]
          Length = 1158

 Score =  308 bits (790), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 151/265 (56%), Positives = 190/265 (71%), Gaps = 7/265 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG I YNQ  R+DTL+Y LVY QRP++ +KTI +  
Sbjct: 689  GLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLRRMDTLLYLLVYPQRPLLTTKTIELVG 748

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KL AGQNAT+AVMSYSGYDIEDA++MNK+SLDRGFGRC+V++    V ++Y N T DR
Sbjct: 749  YDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVFKKYSSVNQKYENNTADR 808

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPE--Y 1090
            I+ P    D    +   + LD DG+ APGE I    + VNK  P I   +     P+  Y
Sbjct: 809  IVRPNRNEDFTGNM---QILDDDGLAAPGEIIRPNDIYVNKQSPIIMKGSPLPGIPDNAY 865

Query: 1091 KEVPVSYKGS--VPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
            +     +KGS   P+ +++V +S++  D   IK L+RQTRRPE+GDKFSSRHGQKGV G 
Sbjct: 866  RPCRQIFKGSEGEPTVVDRVALSTDKNDCLCIKFLIRQTRRPELGDKFSSRHGQKGVCGT 925

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            IV+QED PF+E GICPD+IMNPHG 
Sbjct: 926  IVQQEDFPFSERGICPDLIMNPHGF 950



 Score =  246 bits (628), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 127/233 (54%), Positives = 160/233 (68%), Gaps = 11/233 (4%)

Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSV--PSYLEKVLVSS 1204
            G I+   D+  N+      IIM    L G      Y+     +KGS   P+ +++V +S+
Sbjct: 834  GEIIRPNDIYVNKQS---PIIMKGSPLPGIPD-NAYRPCRQIFKGSEGEPTVVDRVALST 889

Query: 1205 NSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHG 1264
            +  D   IK L+RQTRRPE+GDKFSSRHGQKGV G IV+QED PF+E GICPD+IMNPHG
Sbjct: 890  DKNDCLCIKFLIRQTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHG 949

Query: 1265 YPSRMTVGKLIELLAGKAGLMEGNYKEGTAFG-----GTKLVDVQEELIRHGYNYQGKDI 1319
            +PSRMTVGK+IELL GKAG+  G +  G+AFG       K+  + E LI+ G++Y GKD 
Sbjct: 950  FPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADKVDAISETLIKRGFSYNGKDF 1009

Query: 1320 FYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
             YSGITG  L+AYI+ GP+YYQKLKHMV DK+HAR  GPRV+LTRQPT  R +
Sbjct: 1010 LYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRAR 1062



 Score =  191 bits (484), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 94/207 (45%), Positives = 140/207 (67%), Gaps = 5/207 (2%)

Query: 128 LVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPK-IKAAQF 186
           L K  +D  DY  N  ++   Q  + ++ D   LF     ++   I DK++ K  ++++F
Sbjct: 364 LSKDAMDDKDYVGNKRLELSGQLISLLFED---LFKTMVSEVKKTI-DKLLGKHSRSSRF 419

Query: 187 DIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFE 246
           D   H+  + I+  L   + TGNW ++RF+M R+G++QVL+RLS+IS +G +TR++ QFE
Sbjct: 420 DFSQHLNSNIISFGLERTLSTGNWDVKRFRMHRKGMSQVLARLSFISTMGHVTRVSPQFE 479

Query: 247 KTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGI 306
           K+RKVSGPR+LQ SQWGMLCP DTPEGEACGLVKNLALMTH+TT+ +E  ++ + Y +G+
Sbjct: 480 KSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDQEEGPLISLCYCLGV 539

Query: 307 EHIAMFNGEELSSPGVYLVFVNGILAG 333
           E + + + EEL +P  +LV  NG + G
Sbjct: 540 EDLELLSAEELHTPNSFLVIFNGRILG 566



 Score =  156 bits (395), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 78/136 (57%), Positives = 95/136 (69%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G + FDDFL +G IEYLDVNE N++ IA+ E    P  TTH+EI PFT+LGV AG     
Sbjct: 636 GVRTFDDFLRDGLIEYLDVNEENNALIALYEGEATPE-TTHIEIEPFTILGVVAG----- 689

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQAMG I YNQ  R+DTL+Y LVY QRP++ 
Sbjct: 690 ---------LIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLRRMDTLLYLLVYPQRPLLT 740

Query: 808 SKTIRITNFHKLPAGK 823
           +KTI +  + KL AG+
Sbjct: 741 TKTIELVGYDKLGAGQ 756



 Score = 87.0 bits (214), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 44/95 (46%), Positives = 62/95 (65%), Gaps = 2/95 (2%)

Query: 443 KRFQTYKKTPVDDARDF--LSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLD 500
           K+FQ     P  + R    L    +A++PV    F  K +Y+AVM+RRM+ A+   D +D
Sbjct: 311 KKFQFASAPPEKEGRALGILRDVFLANVPVYKNNFHPKCIYVAVMMRRMMDAILSKDAMD 370

Query: 501 DRDYYGNKRLELAGSLLSLMFEDVFKRFNSELKET 535
           D+DY GNKRLEL+G L+SL+FED+FK   SE+K+T
Sbjct: 371 DKDYVGNKRLELSGQLISLLFEDLFKTMVSEVKKT 405



 Score = 75.9 bits (185), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/59 (54%), Positives = 46/59 (77%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           DK++L+  FLK +GLVK H+DSF+YF+N EIKK+++AN  I S  DP  YL++LD+ +G
Sbjct: 40  DKFQLLPEFLKVRGLVKQHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYLRFLDVRIG 98



 Score = 70.1 bits (170), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 48/115 (41%), Positives = 60/115 (52%), Gaps = 17/115 (14%)

Query: 303 NIGIEHIAMFNG--EELSSPGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHE 360
           N  I+ I   N   E  + P +YL F++     +      V    + E+ N      PH 
Sbjct: 67  NTEIKKIVKANDRIESSTDPSIYLRFLD-----VRIGEPSVTVNAVSETIN------PHM 115

Query: 361 CRLRDLTYSAPITVDIEYTRGS--QRVVRS--DLVIGRMPIMLQSSKCVLRNKTE 411
           CRL DLTY+API VDIEY   S  Q+  R   D+VIGRMPIML+S  CVL  K E
Sbjct: 116 CRLSDLTYAAPILVDIEYIEESHAQKAPREKKDVVIGRMPIMLRSRCCVLHGKDE 170


>gi|223994131|ref|XP_002286749.1| DNA directed RNA polymerase III, second largest subunit
            [Thalassiosira pseudonana CCMP1335]
 gi|220978064|gb|EED96390.1| DNA directed RNA polymerase III, second largest subunit
            [Thalassiosira pseudonana CCMP1335]
          Length = 1108

 Score =  308 bits (790), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 147/269 (54%), Positives = 194/269 (72%), Gaps = 10/269 (3%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+P PHHNQ+PRNTYQ AMGKQA+G +  NQ +R D ++Y +VY  +PMV+++T+ + N
Sbjct: 640  GLIPNPHHNQSPRNTYQSAMGKQAIGTVAINQYSRFDGMLYTMVYPHKPMVKTRTLDLIN 699

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F  +PAGQNA IAVMSYSGYDIEDA+++NKAS+DRGFGRC+V + S+  +++Y N T DR
Sbjct: 700  FDNIPAGQNACIAVMSYSGYDIEDAVVLNKASVDRGFGRCMVLKKSQASVRRYQNGTMDR 759

Query: 1033 ILG-------PLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAIS- 1084
              G       P  E D R    R+R +D+DG+   GE +    V+VNK  PT + + +  
Sbjct: 760  TCGAPDPSAFPSGEEDKRYA--RYRGIDKDGLCMVGELMENGTVMVNKESPTDTSTPVER 817

Query: 1085 MATPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKG 1144
            +A   YK   +SY+ S PSY+++VL+SSN  + FLIK++LRQ RRPE+GDKF+SRHGQKG
Sbjct: 818  LAQVSYKYSGMSYRSSAPSYVDRVLISSNENEQFLIKVMLRQVRRPELGDKFASRHGQKG 877

Query: 1145 VIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            V GLIV Q DMPFNE G  PD+IMNPHG 
Sbjct: 878  VCGLIVPQVDMPFNEQGFPPDLIMNPHGF 906



 Score =  266 bits (680), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 130/194 (67%), Positives = 151/194 (77%), Gaps = 5/194 (2%)

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
            YK   +SY+ S PSY+++VL+SSN  + FLIK++LRQ RRPE+GDKF+SRHGQKGV GLI
Sbjct: 823  YKYSGMSYRSSAPSYVDRVLISSNENEQFLIKVMLRQVRRPELGDKFASRHGQKGVCGLI 882

Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTA----FGG 1297
            V Q DMPFNE G  PD+IMNPHG+PSRMTVGKLIELL GKAG+ EG     +A    FG 
Sbjct: 883  VPQVDMPFNEQGFPPDLIMNPHGFPSRMTVGKLIELLVGKAGVFEGRQAYASAFGEEFGS 942

Query: 1298 TKLVDVQE-ELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSR 1356
            T  V   E  LIR+G NY GKDIFYSG+ G  L+AYI+SGPV+YQKLKHMV DK+HARSR
Sbjct: 943  TDTVQSAELALIRNGLNYTGKDIFYSGVNGAPLDAYIFSGPVFYQKLKHMVLDKMHARSR 1002

Query: 1357 GPRVVLTRQPTGRR 1370
            GPR VLTRQPT  R
Sbjct: 1003 GPRAVLTRQPTEGR 1016



 Score =  209 bits (531), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 104/208 (50%), Positives = 144/208 (69%), Gaps = 5/208 (2%)

Query: 128 LVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQ-F 186
           L K  +D  DY+ N   K+L  A + +    + LF     D+     D ++ K   AQ F
Sbjct: 312 LGKSSLDDKDYYGN---KRLELAGSLLSLLFEDLFKHFNTDLKKQ-TDMVLSKPNRAQAF 367

Query: 187 DIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFE 246
           D++  +R D+I   + +AI +GNW ++RF+M+R GVTQVLSRLSYIS LGMMTR+NSQFE
Sbjct: 368 DVIKTIRPDSIAYGMMSAISSGNWVLKRFRMDRAGVTQVLSRLSYISALGMMTRVNSQFE 427

Query: 247 KTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGI 306
           KTRKVSGPRSLQ SQWGMLCP+DTPEGEACGLVKNLAL+ HITT+ + + + ++  + G+
Sbjct: 428 KTRKVSGPRSLQPSQWGMLCPADTPEGEACGLVKNLALLAHITTDEESEAIERLCRDCGV 487

Query: 307 EHIAMFNGEELSSPGVYLVFVNGILAGI 334
           E + + +G E+ S   +LV +NG++ G+
Sbjct: 488 EDVTLLSGHEIHSRNAFLVLLNGLIVGV 515



 Score =  134 bits (338), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 65/137 (47%), Positives = 87/137 (63%), Gaps = 14/137 (10%)

Query: 687 LGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELL 746
           LG     D L +G +EY+DVNE N+  IAV+E  +     THLEI P TLLGV AG    
Sbjct: 585 LGTIHIKDLLRQGVVEYVDVNEENNCLIAVTERELEWMAYTHLEIDPMTLLGVVAG---- 640

Query: 747 QYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMV 806
                     L+P PHHNQ+PRNTYQ AMGKQA+G +  NQ +R D ++Y +VY  +PMV
Sbjct: 641 ----------LIPNPHHNQSPRNTYQSAMGKQAIGTVAINQYSRFDGMLYTMVYPHKPMV 690

Query: 807 ESKTIRITNFHKLPAGK 823
           +++T+ + NF  +PAG+
Sbjct: 691 KTRTLDLINFDNIPAGQ 707



 Score =  107 bits (267), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 53/116 (45%), Positives = 78/116 (67%), Gaps = 3/116 (2%)

Query: 422 SSVTMHSQRTSPLLSCKKLRQKRF---QTYKKTPVDDARDFLSSTCIAHIPVINMRFKMK 478
           S + + +QR +      K+R KR     T K +P D+ARD  ++  ++H+PV+N  F  K
Sbjct: 237 SKLGIVTQRHALKYIGNKMRAKRGAFGSTRKLSPEDEARDVFANVVLSHVPVVNFDFHAK 296

Query: 479 AMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELKE 534
            +Y+  ++RR+V+       LDD+DYYGNKRLELAGSLLSL+FED+FK FN++LK+
Sbjct: 297 TIYIGHIVRRLVMVQLGKSSLDDKDYYGNKRLELAGSLLSLLFEDLFKHFNTDLKK 352



 Score = 92.4 bits (228), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 43/71 (60%), Positives = 55/71 (77%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQ 400
           V +P I+E    T Q TP +CRLRD TYSAPI V++ YTRG Q VV+  ++IGRMPIML+
Sbjct: 45  VGEPSIDEDSYATTQATPFQCRLRDCTYSAPIYVNVRYTRGRQIVVKKKVMIGRMPIMLR 104

Query: 401 SSKCVLRNKTE 411
           SSKC+LR+K+E
Sbjct: 105 SSKCLLRDKSE 115



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 34/46 (73%), Gaps = 2/46 (4%)

Query: 129 VKPHIDSFDYFINVEIKKLMQAN--ANIYSDVDPLFYLKYLDIHVG 172
           ++ HIDSFD+F+NVE+++++Q +    I SD DP FYL+Y D  VG
Sbjct: 1   MRQHIDSFDHFVNVEMRQIVQVSRWQLIRSDYDPKFYLRYTDCWVG 46


>gi|196011451|ref|XP_002115589.1| hypothetical protein TRIADDRAFT_59462 [Trichoplax adhaerens]
 gi|190581877|gb|EDV21952.1| hypothetical protein TRIADDRAFT_59462 [Trichoplax adhaerens]
          Length = 1016

 Score =  308 bits (790), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 148/266 (55%), Positives = 192/266 (72%), Gaps = 38/266 (14%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+P+PHHNQ+PRNTYQCAMGKQA+G IGYNQ+NRIDT++Y LVY Q P+V++KTI +  
Sbjct: 585  GLIPFPHHNQSPRNTYQCAMGKQAIGTIGYNQRNRIDTVLYQLVYPQVPLVKTKTIDLIE 644

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNA IAVMSYSGYDIEDA+I+NKAS+DR                         
Sbjct: 645  FDKLPAGQNAIIAVMSYSGYDIEDAVILNKASVDR------------------------- 679

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAIS-----MAT 1087
              GP  +A T K +++H+ LD DGI  PGE++  +Q+L+NKS+P+++ + I+     +  
Sbjct: 680  --GPQADAQTGKTIWKHKVLDADGICMPGEKVESKQILINKSIPSVTSTPIAGTGQKLLQ 737

Query: 1088 PEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
            PEY ++P++Y+G   +Y+E V++SSN+++AFLIK LLR +RRPEIGDKFSSRHGQKGV G
Sbjct: 738  PEYIDMPMTYRGPTDAYVENVMISSNNDEAFLIKTLLRSSRRPEIGDKFSSRHGQKGVCG 797

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            LIV QEDMPF       D IMNPHG 
Sbjct: 798  LIVNQEDMPFT------DQIMNPHGF 817



 Score =  257 bits (657), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 129/225 (57%), Positives = 164/225 (72%), Gaps = 9/225 (4%)

Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRIT-EYKEVPVSYKGSVPSYLEKVLVSSN 1205
            G  VE + +  N+S   P +   P    G   +  EY ++P++Y+G   +Y+E V++SSN
Sbjct: 706  GEKVESKQILINKS--IPSVTSTPIAGTGQKLLQPEYIDMPMTYRGPTDAYVENVMISSN 763

Query: 1206 SEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGY 1265
            +++AFLIK LLR +RRPEIGDKFSSRHGQKGV GLIV QEDMPF       D IMNPHG+
Sbjct: 764  NDEAFLIKTLLRSSRRPEIGDKFSSRHGQKGVCGLIVNQEDMPFT------DQIMNPHGF 817

Query: 1266 PSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGIT 1325
            PSRMTVGKL+E++ GKA L++G ++ GTAF G KL D+ + LI + Y+Y GKD   SGIT
Sbjct: 818  PSRMTVGKLMEVIGGKASLLDGKFRYGTAFDGDKLEDLCQTLIDYNYSYAGKDYLTSGIT 877

Query: 1326 GEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRR 1370
            GE L AYI+ GPVYYQ+LKHMV DK+HAR++GPR VLTRQPT  R
Sbjct: 878  GEGLSAYIFFGPVYYQRLKHMVLDKMHARAKGPRAVLTRQPTEGR 922



 Score =  244 bits (622), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 121/220 (55%), Positives = 162/220 (73%), Gaps = 13/220 (5%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAA-------- 184
           +D  DY+ N  ++   Q  A ++ D+    + K+      IA+K IPK +A         
Sbjct: 243 LDDKDYYGNKRLELAGQLLALLFEDL----FKKFNSELKSIAEKNIPKQRAGPVNMNLRF 298

Query: 185 -QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
            +FDIV +MRQD ITN    A+ TGNW+I+R+KM+R GVTQVLSRLSY+S LGMMTRI+S
Sbjct: 299 LEFDIVKYMRQDQITNGFNLALTTGNWSIKRYKMDRAGVTQVLSRLSYLSALGMMTRISS 358

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
           QFEKTRKVSGPRSLQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT++D+K ++ +++N
Sbjct: 359 QFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDSDDKIIINLLFN 418

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGITCHHKEVCK 343
           +G+E I + +GEELS P +Y+V+VNG + G   ++K++ +
Sbjct: 419 LGVEDINLLSGEELSLPHIYIVYVNGYVLGAARNYKKLIR 458



 Score =  171 bits (434), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 83/139 (59%), Positives = 101/139 (72%), Gaps = 15/139 (10%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G + FDDF+  G IEYLDVNE ND +IA+ ES I    TTHL+I PFT+LGVCAG     
Sbjct: 532 GIRSFDDFIRNGLIEYLDVNEENDCNIALYESDINSK-TTHLDIEPFTILGVCAG----- 585

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+P+PHHNQ+PRNTYQCAMGKQA+G IGYNQ+NRIDT++Y LVY Q P+V+
Sbjct: 586 ---------LIPFPHHNQSPRNTYQCAMGKQAIGTIGYNQRNRIDTVLYQLVYPQVPLVK 636

Query: 808 SKTIRITNFHKLPAGKCQI 826
           +KTI +  F KLPAG+  I
Sbjct: 637 TKTIDLIEFDKLPAGQNAI 655



 Score =  166 bits (421), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 97/219 (44%), Positives = 125/219 (57%), Gaps = 54/219 (24%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQ 400
           V  P+IEESFN T+ T PHECRLRDLTYSAPI VDIEYTRG+QR+ R  L IGR+P+ML+
Sbjct: 87  VGNPDIEESFNVTKPTYPHECRLRDLTYSAPIVVDIEYTRGAQRIRRQKLPIGRVPVMLR 146

Query: 401 SSKCVLRNKT-----EYTSS-------------------SRRASTSSVTMHSQRTSPLLS 436
           SS CVL  K+     +Y                        + S + + +        LS
Sbjct: 147 SSICVLNGKSPVELAKYNECPIDPGGYFIVKGVEKVILIQEQLSKNRMILEVDNKGNALS 206

Query: 437 --CKKLRQKRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALS 494
               ++RQ+++   KK PVD+ARD L++  ++HIP I                       
Sbjct: 207 YIGSRVRQRKWGA-KKLPVDEARDLLANVVLSHIPSI----------------------- 242

Query: 495 DPDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
               LDD+DYYGNKRLELAG LL+L+FED+FK+FNSELK
Sbjct: 243 ----LDDKDYYGNKRLELAGQLLALLFEDLFKKFNSELK 277



 Score = 87.8 bits (216), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 39/65 (60%), Positives = 52/65 (80%)

Query: 111 EIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIH 170
           ++ DKWKLV +FLK KGLVK HIDS++YFIN EIKK++ AN  + +D D +FYLKYL+++
Sbjct: 27  KLEDKWKLVPAFLKVKGLVKQHIDSYNYFINCEIKKIVNANNKVTTDADTVFYLKYLNVY 86

Query: 171 VGIAD 175
           VG  D
Sbjct: 87  VGNPD 91


>gi|323447819|gb|EGB03728.1| hypothetical protein AURANDRAFT_39265 [Aureococcus anophagefferens]
          Length = 1222

 Score =  308 bits (788), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 140/264 (53%), Positives = 195/264 (73%), Gaps = 3/264 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GLV +PHHNQ+PRNTYQCAMGKQAMG +  NQ  R+D+L+Y+LVY Q+PMV+S+ + + +
Sbjct: 709  GLVAFPHHNQSPRNTYQCAMGKQAMGSVATNQYERMDSLLYSLVYPQKPMVKSRVLDLVH 768

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F  LP G NAT+AVMSYSGYDIEDA+++N+ASLDRGF RCLV +  +  +++Y N   DR
Sbjct: 769  FDALPGGCNATLAVMSYSGYDIEDAIVLNRASLDRGFMRCLVIKRHQVSIRRYANGACDR 828

Query: 1033 ILG-PLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYK 1091
              G P +E   +  V+R+ ALD DGI   GE++ ++ +++N+ MP      ++ A P   
Sbjct: 829  TTGPPSIELFLQGYVFRYSALDNDGICRVGEKLHDQSIMINREMPVEDRDELTPALPGRV 888

Query: 1092 E--VPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
               V + YK   PS +++VL+++N  D FL+K+++RQ RRPE+GDKF+SRHGQKGV G I
Sbjct: 889  SAFVVLHYKSPAPSVVDRVLLTANETDQFLVKVMVRQCRRPEVGDKFASRHGQKGVCGAI 948

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
            V QEDMPF+++G+CPD+IMNPHG 
Sbjct: 949  VSQEDMPFSDTGVCPDVIMNPHGF 972



 Score =  252 bits (644), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 115/193 (59%), Positives = 149/193 (77%), Gaps = 5/193 (2%)

Query: 1185 VPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQ 1244
            V + YK   PS +++VL+++N  D FL+K+++RQ RRPE+GDKF+SRHGQKGV G IV Q
Sbjct: 892  VVLHYKSPAPSVVDRVLLTANETDQFLVKVMVRQCRRPEVGDKFASRHGQKGVCGAIVSQ 951

Query: 1245 EDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFG-GTKLVDV 1303
            EDMPF+++G+CPD+IMNPHG+PSRMTVGK+IEL+AGK G+  G    GTAFG  T   D 
Sbjct: 952  EDMPFSDTGVCPDVIMNPHGFPSRMTVGKIIELVAGKCGVCSGRQAYGTAFGEKTGSADC 1011

Query: 1304 QEE----LIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPR 1359
              E    L++HG++Y GKD+ YSGI+GE L  Y++ GPV+YQKLKHMV DK+HAR+RGPR
Sbjct: 1012 ASEASCTLLKHGFSYIGKDMLYSGISGEPLRVYVFMGPVFYQKLKHMVMDKMHARARGPR 1071

Query: 1360 VVLTRQPTGRRWK 1372
              LTRQPT  R +
Sbjct: 1072 AQLTRQPTEGRSR 1084



 Score =  207 bits (527), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 106/205 (51%), Positives = 141/205 (68%), Gaps = 8/205 (3%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKI-KAAQFDIVNH 191
           +D  DY+ N  ++   Q  + ++ D   LF     D+    AD ++ K  + A FDIV  
Sbjct: 360 LDDKDYYGNKRLELAGQLLSLLFED---LFKRFNADLKRS-ADLVLQKQNRTAVFDIVKS 415

Query: 192 M--RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
              R DTI+     AI TGNW ++RFKM+R GVTQVLSRLSY+S +GMMTR+NSQFEKTR
Sbjct: 416 TVWRTDTISQGFVHAISTGNWVLKRFKMDRAGVTQVLSRLSYVSAIGMMTRVNSQFEKTR 475

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHI 309
           K SGPR+LQ SQWGMLCP+DTPEGE CGLVKNLAL+ H+TT+ + +   +  +++G+E +
Sbjct: 476 KTSGPRALQLSQWGMLCPADTPEGETCGLVKNLALLAHVTTDAEVEKTKRSCFDLGVEQL 535

Query: 310 AMFNGEELSS-PGVYLVFVNGILAG 333
              NG EL+S PG YLVF+NG++ G
Sbjct: 536 GYLNGAELNSHPGAYLVFLNGLVIG 560



 Score =  138 bits (348), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 128/455 (28%), Positives = 199/455 (43%), Gaps = 88/455 (19%)

Query: 104 SKLKDSPEIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANAN--IYSDVDPL 161
           S+  ++P + +KW+L+  FL+   L+  HI SFDYFI  EIKK++ A  N  + S+VDP 
Sbjct: 7   SRRLENPYLENKWQLLPHFLR---LMNQHIASFDYFIETEIKKVVAAEPNHTVRSEVDPN 63

Query: 162 FYLKYLDIHVGIADKIIPKIKAAQFDIVNHMRQDTITNALTAAIQTGNWTIRRFK--MER 219
           FYL Y D++VG+     P I+   F         T        ++   ++   F     R
Sbjct: 64  FYLSYTDVYVGV-----PSIEEDAF-------TSTAATPFECRLRDCTYSAPIFVDVRYR 111

Query: 220 QGVTQVLSRLSYISGLGMMTRINSQFEKTRKVSGPRSLQGSQWGML-----CPSDTPEGE 274
           +G   V ++   I  + +M R           S    L    W  L     CP D     
Sbjct: 112 RGPQIVTTKRVPIGRIPIMLR-----------SSQCVLHNKSWSQLEALKECPHDPGGYF 160

Query: 275 ACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
               V+ + LM     E   KN + I               EL + G    FV   +   
Sbjct: 161 VVKGVEKVILMQ----EQLSKNRMII---------------ELDAKG----FVCATITSS 197

Query: 335 TCHHKEVCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYT------RGSQRVVRS 388
           T   K  C   ++ + +  R    H     D+    P+ V ++          ++ V  +
Sbjct: 198 THERKSRCSIVVKPTTHGHRVYLKHNTLGDDI----PVVVILKAMGMESDQEIAELVSSA 253

Query: 389 DLVIGRMPIMLQSSKCVLRNKT-----EYTSSSRRASTSSVTMHSQRTSPLLSCKKLRQK 443
           DL I  + +      C    KT     EY   + RA   + ++   R+            
Sbjct: 254 DLKIADIFVNSMEEPCAAHVKTQKQALEYVGQAIRAKQKAQSVDGSRS------------ 301

Query: 444 RFQTYKKTPV---DDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLD 500
           ++  + + PV   D+AR+ L+   ++H+PV +  F  K  Y+  + RR++ A  D  +LD
Sbjct: 302 QYLPHSRRPVSIEDEAREVLAHVVLSHVPVEDYDFVAKRTYIGHVTRRVLAASLDNSLLD 361

Query: 501 DRDYYGNKRLELAGSLLSLMFEDVFKRFNSELKET 535
           D+DYYGNKRLELAG LLSL+FED+FKRFN++LK +
Sbjct: 362 DKDYYGNKRLELAGQLLSLLFEDLFKRFNADLKRS 396



 Score =  129 bits (323), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 63/131 (48%), Positives = 84/131 (64%), Gaps = 15/131 (11%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKR 751
            D     G IEY+DVNE N+  IA+ E  + P   TH+EI P T+LG+ +G         
Sbjct: 660 LDHLTTVGIIEYVDVNEENNCFIALDERELTPR-HTHVEIDPVTILGIVSG--------- 709

Query: 752 FHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTI 811
                LV +PHHNQ+PRNTYQCAMGKQAMG +  NQ  R+D+L+Y+LVY Q+PMV+S+ +
Sbjct: 710 -----LVAFPHHNQSPRNTYQCAMGKQAMGSVATNQYERMDSLLYSLVYPQKPMVKSRVL 764

Query: 812 RITNFHKLPAG 822
            + +F  LP G
Sbjct: 765 DLVHFDALPGG 775


>gi|219116230|ref|XP_002178910.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217409677|gb|EEC49608.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 1211

 Score =  307 bits (786), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 147/277 (53%), Positives = 192/277 (69%), Gaps = 16/277 (5%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            G++P+PHHNQ+PRNTY  AM KQAMG +  NQ  R+D L+Y L+Y Q+PMV+S+T+ + N
Sbjct: 733  GIIPFPHHNQSPRNTYTVAMAKQAMGSVSMNQYERMDGLIYTLIYPQKPMVKSRTLDLVN 792

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F  +P G NA IAVMSYSGYDIEDA+I+NKA++DRGFGRC+V R  +  +++Y N T DR
Sbjct: 793  FDNIPGGHNACIAVMSYSGYDIEDAIILNKAAVDRGFGRCMVLRKHQTSVRRYANGTMDR 852

Query: 1033 ILGP-----LLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISV------- 1080
               P       + +  K   R+ A+D+DGI   GE+I    V+VNK  P  +        
Sbjct: 853  TCAPPDPGSFPDGEDDKRFARYMAIDKDGICRVGEKIENGSVMVNKESPADTTSNMAGVD 912

Query: 1081 ----SAISMATPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKF 1136
                S +SMA   YK   VSY+GS  +Y++KVL++SN  + FLIK++LRQ RRPEIGDKF
Sbjct: 913  FGFNSGMSMAHLNYKPSGVSYRGSASTYVDKVLITSNENEQFLIKVMLRQVRRPEIGDKF 972

Query: 1137 SSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            +SRHGQKGV GLIV +ED+PFNE G  PD+IMNPHG 
Sbjct: 973  ASRHGQKGVCGLIVPEEDLPFNEFGHVPDLIMNPHGF 1009



 Score =  260 bits (665), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 126/196 (64%), Positives = 149/196 (76%), Gaps = 5/196 (2%)

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
            YK   VSY+GS  +Y++KVL++SN  + FLIK++LRQ RRPEIGDKF+SRHGQKGV GLI
Sbjct: 926  YKPSGVSYRGSASTYVDKVLITSNENEQFLIKVMLRQVRRPEIGDKFASRHGQKGVCGLI 985

Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFG----- 1296
            V +ED+PFNE G  PD+IMNPHG+PSRMTVGKL+ELL GKAGL EG     +AFG     
Sbjct: 986  VPEEDLPFNEFGHVPDLIMNPHGFPSRMTVGKLLELLVGKAGLYEGRQGYSSAFGEEFGS 1045

Query: 1297 GTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSR 1356
                    E L+R+G NY GKDI YSG  GE L+AYI+SGPV+YQKLKHMV DK HAR+R
Sbjct: 1046 ADTAQSASEALLRNGLNYTGKDILYSGTNGEPLDAYIFSGPVFYQKLKHMVLDKAHARAR 1105

Query: 1357 GPRVVLTRQPTGRRWK 1372
            GPR VLTRQPT  R +
Sbjct: 1106 GPRAVLTRQPTEGRSR 1121



 Score =  214 bits (544), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 114/219 (52%), Positives = 152/219 (69%), Gaps = 8/219 (3%)

Query: 128 LVKPHIDSFDYFINVEIKKLMQANANIYSDV-DPLFYLKYLDIHVGIADKIIPKIKAAQ- 185
           L K  +D  DY+ N    K ++   N+ S + + LF +   D+    AD ++ K    Q 
Sbjct: 394 LGKMPLDDKDYYGN----KRLELAGNLLSLLFEDLFKIFNKDLKRQ-ADLVLSKPNRTQA 448

Query: 186 FDIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQF 245
           FD+V  +R DTITN +  AI TGNW ++RF+M+R GVTQVLSRLSY+S LGMMTRINSQF
Sbjct: 449 FDVVKTIRPDTITNGMINAIATGNWVLKRFRMDRAGVTQVLSRLSYMSALGMMTRINSQF 508

Query: 246 EKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITT-ENDEKNMLKIMYNI 304
           EKTRKVSGPRSLQ SQWGMLCP+DTPEGEACGLVKNLAL+ HITT E D + + +I  ++
Sbjct: 509 EKTRKVSGPRSLQPSQWGMLCPADTPEGEACGLVKNLALLGHITTDEADTRPIERICRDL 568

Query: 305 GIEHIAMFNGEELSSPGVYLVFVNGILAGITCHHKEVCK 343
           G+E +    G E++S   +LVF+NG++ G+    +E+ +
Sbjct: 569 GVEDVKRMTGHEINSHQAFLVFLNGLILGVHTRPRELVR 607



 Score =  127 bits (320), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 62/146 (42%), Positives = 86/146 (58%), Gaps = 24/146 (16%)

Query: 687 LGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVT----------THLEIAPFTL 736
           LG     D + +G +EY+D NE N++ IAV+E  +   +           THLE+ PFT+
Sbjct: 668 LGTMDITDLMRQGIVEYVDCNEENNTLIAVTERDLEVAILHGLETRKMRYTHLEVDPFTI 727

Query: 737 LGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMY 796
           LGV  GI              +P+PHHNQ+PRNTY  AM KQAMG +  NQ  R+D L+Y
Sbjct: 728 LGVVGGI--------------IPFPHHNQSPRNTYTVAMAKQAMGSVSMNQYERMDGLIY 773

Query: 797 NLVYAQRPMVESKTIRITNFHKLPAG 822
            L+Y Q+PMV+S+T+ + NF  +P G
Sbjct: 774 TLIYPQKPMVKSRTLDLVNFDNIPGG 799



 Score = 96.3 bits (238), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 45/88 (51%), Positives = 67/88 (76%), Gaps = 2/88 (2%)

Query: 448 YKK--TPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYY 505
           Y+K  +P D+AR+ L++  ++H+PV +  F+ KA+Y+  ++RR++L       LDD+DYY
Sbjct: 346 YRKNVSPEDEAREVLANVVLSHVPVTHFDFREKALYIGHIVRRVLLVHLGKMPLDDKDYY 405

Query: 506 GNKRLELAGSLLSLMFEDVFKRFNSELK 533
           GNKRLELAG+LLSL+FED+FK FN +LK
Sbjct: 406 GNKRLELAGNLLSLLFEDLFKIFNKDLK 433



 Score = 87.4 bits (215), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 39/71 (54%), Positives = 53/71 (74%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQ 400
           V +P +EE     +  TP +CRLRD TYSAPI V++ YTRG Q VV+  ++IGRMPIML+
Sbjct: 125 VGEPSVEEDSYSVKSATPFQCRLRDCTYSAPIYVNVRYTRGRQIVVKRKVMIGRMPIMLR 184

Query: 401 SSKCVLRNKTE 411
           S KC+LR+++E
Sbjct: 185 SKKCLLRDRSE 195



 Score = 63.2 bits (152), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 51/74 (68%), Gaps = 4/74 (5%)

Query: 103 TSKLKDSP--EIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANA--NIYSDV 158
           T    D+P   +RDKW+L+  FL+ + L++ HIDSFD+F++VE+++++Q+ +   I S+ 
Sbjct: 53  TKTPDDAPVGSLRDKWRLLPYFLRLRSLLRQHIDSFDHFVDVEMQQIVQSPSACEIRSEH 112

Query: 159 DPLFYLKYLDIHVG 172
           DP FYL+Y    VG
Sbjct: 113 DPKFYLRYEACWVG 126


>gi|261194511|ref|XP_002623660.1| DNA-directed RNA polymerase III polypeptide [Ajellomyces dermatitidis
            SLH14081]
 gi|239588198|gb|EEQ70841.1| DNA-directed RNA polymerase III polypeptide [Ajellomyces dermatitidis
            SLH14081]
          Length = 1204

 Score =  307 bits (786), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 145/266 (54%), Positives = 193/266 (72%), Gaps = 7/266 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I  NQ  RID+L+Y +VY Q+PMV+++TI +  
Sbjct: 737  GLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYTMVYPQKPMVKTRTIELIK 796

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQ+AT+AVMSYSGYDIEDAL++NK+S+DRGFGRC V+R     LK Y N T D+
Sbjct: 797  YDKLPAGQSATVAVMSYSGYDIEDALVLNKSSVDRGFGRCQVFRKYSTNLKSYSNGTKDK 856

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATP---- 1088
            + GP  + +   P+ +H  LD DG+ A GE++ + +V +NK  P  ++S+    +     
Sbjct: 857  LKGP--DRENGLPIRKHALLDSDGLAAVGEKVNQGEVYINKVTPENALSSGITGSDAGRP 914

Query: 1089 -EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
              Y   P +YK   PSY++KV++S+   +  LIK+  RQTR PE+GDKFSSRHGQKGV+G
Sbjct: 915  IAYIPSPQTYKLPDPSYIDKVMISATEAENQLIKVQTRQTRVPEVGDKFSSRHGQKGVVG 974

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            +I E  DMPF++ GI PDIIMNPHG 
Sbjct: 975  IIAEYADMPFSDLGIVPDIIMNPHGF 1000



 Score =  257 bits (656), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 124/231 (53%), Positives = 168/231 (72%), Gaps = 5/231 (2%)

Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHGLKGCD--RITEYKEVPVSYKGSVPSYLEKVL 1201
              +G  V Q ++  N+  + P+  ++  G+ G D  R   Y   P +YK   PSY++KV+
Sbjct: 880  AAVGEKVNQGEVYINK--VTPENALSS-GITGSDAGRPIAYIPSPQTYKLPDPSYIDKVM 936

Query: 1202 VSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMN 1261
            +S+   +  LIK+  RQTR PE+GDKFSSRHGQKGV+G+I E  DMPF++ GI PDIIMN
Sbjct: 937  ISATEAENQLIKVQTRQTRVPEVGDKFSSRHGQKGVVGIIAEYADMPFSDLGIVPDIIMN 996

Query: 1262 PHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFY 1321
            PHG+PSRMTVGK++EL+AGKAG++ G +  GTAFGG+ + ++   L+ HG++Y GKD   
Sbjct: 997  PHGFPSRMTVGKMLELIAGKAGILSGQFGYGTAFGGSPVEEMSAILVDHGFSYGGKDYLT 1056

Query: 1322 SGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
            SGITGE L AY++ GP+YYQKLKHMVQDK+H+R+RGPR +LTRQPT  R +
Sbjct: 1057 SGITGEPLPAYVFMGPIYYQKLKHMVQDKMHSRARGPRAILTRQPTEGRSR 1107



 Score =  206 bits (525), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 107/200 (53%), Positives = 140/200 (70%), Gaps = 7/200 (3%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPK-IKAAQFDI--V 189
           +D  DY  N  ++   Q  A ++ D   LF     DI + I DK++ K ++  QFD   V
Sbjct: 415 VDDRDYVGNKRLELAGQLLALLFED---LFKKFQFDIKMNI-DKVLKKPVRTEQFDAYGV 470

Query: 190 NHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
             +  + IT  +  AI TGNW+++RF+MER GVT VLSRLSYI+ LGMMTRI+SQFEKTR
Sbjct: 471 VAIHGNHITQGMNRAISTGNWSLKRFRMERAGVTHVLSRLSYIAALGMMTRISSQFEKTR 530

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHI 309
           KVSGPR+LQ SQ+GMLCPSDTPEGEACGLVKNLALMTHITT ++E+ + K+++ +G E +
Sbjct: 531 KVSGPRALQPSQFGMLCPSDTPEGEACGLVKNLALMTHITTNDEEEPVRKLIFALGAEDV 590

Query: 310 AMFNGEELSSPGVYLVFVNG 329
               G EL   G Y++F+NG
Sbjct: 591 QTVGGRELHGQGAYIIFLNG 610



 Score =  157 bits (396), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 77/137 (56%), Positives = 93/137 (67%), Gaps = 15/137 (10%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G   FDDFL  G +EYLD NE NDS+IAV E  I    TTHLEI PFT+LG  AG     
Sbjct: 684 GSMEFDDFLAHGLVEYLDCNEENDSYIAVYEEDITDS-TTHLEIEPFTILGAVAG----- 737

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQA+G I  NQ  RID+L+Y +VY Q+PMV+
Sbjct: 738 ---------LIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYTMVYPQKPMVK 788

Query: 808 SKTIRITNFHKLPAGKC 824
           ++TI +  + KLPAG+ 
Sbjct: 789 TRTIELIKYDKLPAGQS 805



 Score = 97.8 bits (242), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 44/89 (49%), Positives = 66/89 (74%)

Query: 445 FQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDY 504
           F   ++  V +A + +SS  I+H+ V N+ F+ KA+Y+A M RR+++A  DP ++DDRDY
Sbjct: 361 FGITRRNHVQEAIEAISSVIISHVVVENLNFRPKALYVAHMARRVLMAKHDPSLVDDRDY 420

Query: 505 YGNKRLELAGSLLSLMFEDVFKRFNSELK 533
            GNKRLELAG LL+L+FED+FK+F  ++K
Sbjct: 421 VGNKRLELAGQLLALLFEDLFKKFQFDIK 449



 Score = 92.0 bits (227), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 41/67 (61%), Positives = 50/67 (74%)

Query: 345 EIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKC 404
           E +  F+     TP+ECRLRD+TY+API VD EY RG QRV R+   IGRMP+ML+SSKC
Sbjct: 145 EQDSKFDVASTITPNECRLRDMTYAAPILVDFEYVRGRQRVKRNGTAIGRMPVMLRSSKC 204

Query: 405 VLRNKTE 411
           VL NK+E
Sbjct: 205 VLSNKSE 211



 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/59 (59%), Positives = 50/59 (84%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           DKW L+ +FLK KGLVK HIDS++YF+ V++KK++QA+A I SDVDP FY+++ DI++G
Sbjct: 79  DKWNLLPAFLKVKGLVKQHIDSYNYFVEVQLKKIVQASAEIRSDVDPNFYIRFHDIYLG 137


>gi|357138000|ref|XP_003570586.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Brachypodium
            distachyon]
          Length = 1158

 Score =  307 bits (786), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 148/266 (55%), Positives = 187/266 (70%), Gaps = 5/266 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG I YNQ  R D+L+Y LVYAQRP++ +KTI +  
Sbjct: 685  GLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLFRADSLLYLLVYAQRPLLTTKTIELVG 744

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQT-HD 1031
            + KL AGQNAT+AVMSYSGYDIEDA++MNK+SLDRGFGRC+  +      ++Y N T  D
Sbjct: 745  YDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIAMKKYTVTTEKYANGTISD 804

Query: 1032 RILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTI--SVSAISMATPE 1089
            RI  P  + D        RALD+DG VAPG+ I    + VNK  P         ++   +
Sbjct: 805  RIAKPQRDKDGALIKQNMRALDEDGFVAPGQIIRNHDIYVNKQTPKAIPKTPGTTLTDRD 864

Query: 1090 YKEVPVSYKG--SVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
            YK+ P  YKG     + +++V++ S++ D   IK ++R TRRPE+GDKFSSRHGQKGV G
Sbjct: 865  YKDSPAVYKGVDGETTVVDRVMLCSDTNDKLTIKCIIRHTRRPEVGDKFSSRHGQKGVCG 924

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
             IV+QED PF+E GICPD+IMNPHG 
Sbjct: 925  TIVQQEDFPFSERGICPDLIMNPHGF 950



 Score =  252 bits (643), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 124/233 (53%), Positives = 162/233 (69%), Gaps = 11/233 (4%)

Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKG--SVPSYLEKVLVSS 1204
            G I+   D+  N+    P  I    G    DR  +YK+ P  YKG     + +++V++ S
Sbjct: 834  GQIIRNHDIYVNKQ--TPKAIPKTPGTTLTDR--DYKDSPAVYKGVDGETTVVDRVMLCS 889

Query: 1205 NSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHG 1264
            ++ D   IK ++R TRRPE+GDKFSSRHGQKGV G IV+QED PF+E GICPD+IMNPHG
Sbjct: 890  DTNDKLTIKCIIRHTRRPEVGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHG 949

Query: 1265 YPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTK-----LVDVQEELIRHGYNYQGKDI 1319
            +PSRMT+GK+IELL GKAG+  G +  G+AFG +      + D+   L++HG++Y GKD 
Sbjct: 950  FPSRMTIGKMIELLGGKAGVSCGRFHYGSAFGESSGNADHVDDISHTLVKHGFSYNGKDF 1009

Query: 1320 FYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
             YSGI G  LEAYI+ GP+YYQKLKHMV DK+HAR+ GPRV+LTRQPT  R +
Sbjct: 1010 LYSGILGHPLEAYIFMGPIYYQKLKHMVLDKMHARASGPRVLLTRQPTEGRSR 1062



 Score =  201 bits (510), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 88/142 (61%), Positives = 114/142 (80%)

Query: 192 MRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKV 251
           M+QD IT  L  AI TGNW I+RFKM R+GV+QVLSRLSY++ LG MTRI  QFEKTRK 
Sbjct: 416 MQQDLITTGLERAISTGNWDIKRFKMHRKGVSQVLSRLSYMASLGYMTRITPQFEKTRKT 475

Query: 252 SGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAM 311
           SGPR+LQ SQWGMLCP DTPEGEACGL KNLAL+TH+TT+ +E  ++ + Y++G+E +++
Sbjct: 476 SGPRALQPSQWGMLCPCDTPEGEACGLTKNLALLTHVTTDQEEGPLMNLCYSLGVEKLSL 535

Query: 312 FNGEELSSPGVYLVFVNGILAG 333
            +GEE+ +PG +LV  NG++ G
Sbjct: 536 LSGEEIHAPGSFLVMFNGLILG 557



 Score =  149 bits (375), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 75/140 (53%), Positives = 94/140 (67%), Gaps = 18/140 (12%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSE----SGIRPGVTTHLEIAPFTLLGVCAGI 743
           G + FDDFL +G IEYLDVNE N++ IA+ E      ++    TH+EI P T+LGV AG 
Sbjct: 627 GVRSFDDFLRDGLIEYLDVNEENNALIALYEHLDQDDVQRSSITHIEIEPMTILGVVAG- 685

Query: 744 ELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQR 803
                        L+PYPHHNQ+PRNTYQCAMGKQAMG I YNQ  R D+L+Y LVYAQR
Sbjct: 686 -------------LIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLFRADSLLYLLVYAQR 732

Query: 804 PMVESKTIRITNFHKLPAGK 823
           P++ +KTI +  + KL AG+
Sbjct: 733 PLLTTKTIELVGYDKLGAGQ 752



 Score = 87.0 bits (214), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 39/75 (52%), Positives = 54/75 (72%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           ++  L    +AH+PV N  F+ K +Y AVM+RRM+ A+ + D  DD+DY GNKRLEL+G 
Sbjct: 317 SKTLLRDVFVAHVPVENGNFREKCIYTAVMLRRMLDAILNSDTFDDKDYVGNKRLELSGQ 376

Query: 516 LLSLMFEDVFKRFNS 530
           L+SL+FED+FK  NS
Sbjct: 377 LVSLLFEDLFKTMNS 391



 Score = 73.6 bits (179), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 46/111 (41%), Positives = 59/111 (53%), Gaps = 15/111 (13%)

Query: 305 GIEHIAMFNG--EELSSPGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHECR 362
           GI++I   N   E  S P +YL + +            V +P ++  F      TPH CR
Sbjct: 66  GIKNIVQANNRIEARSDPSIYLRYKD----------IRVGEPSVQVDFR-VETITPHFCR 114

Query: 363 LRDLTYSAPITVDIEYTRGSQRVV--RSDLVIGRMPIMLQSSKCVLRNKTE 411
           L D TYSAP+ VDIEYT G   VV  + + +IG MPIML+S  CVL  K E
Sbjct: 115 LTDRTYSAPVIVDIEYTVGKTHVVHRKPNFIIGYMPIMLRSYACVLNGKDE 165



 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/59 (55%), Positives = 43/59 (72%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           DK++L+ +FLK +GLVK HIDSF+YFI   IK ++QAN  I +  DP  YL+Y DI VG
Sbjct: 37  DKFELLPAFLKVRGLVKEHIDSFNYFITKGIKNIVQANNRIEARSDPSIYLRYKDIRVG 95


>gi|303287030|ref|XP_003062804.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226455440|gb|EEH52743.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 1197

 Score =  306 bits (785), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 151/267 (56%), Positives = 189/267 (70%), Gaps = 8/267 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            G++PYPHHNQ+PRNTYQCAMGKQAMG I +NQ NR+DTLMY LVY Q+P+V++KTI +  
Sbjct: 731  GIIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLNRMDTLMYLLVYPQKPIVKTKTIELIG 790

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + +L AGQNAT+AVMSYSGYDIEDA++MNKASLDRGFGRC+V R     +K+Y N+T DR
Sbjct: 791  YDRLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVLRKYATQVKKYSNRTMDR 850

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAI----SMATP 1088
            I+ P        P  RHR LD+DGI + G  I    V VNK  P+ +   +    +M   
Sbjct: 851  IVAP--TESQAGPTGRHRLLDRDGIASVGTLINPGDVYVNKQSPSNTRDPLPNPHAMPDT 908

Query: 1089 EYKEVPVSYKG--SVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVI 1146
             Y+  P SYKG       ++KV+++   E  F +K L+R TRRPE+GDKFSSRHGQKGVI
Sbjct: 909  FYRPTPQSYKGPQGESCVVDKVMLTMTDEGVFNVKCLVRHTRRPEVGDKFSSRHGQKGVI 968

Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G I+ Q D PF+E GI PD+IMNPHG 
Sbjct: 969  GTILPQRDFPFSERGITPDLIMNPHGF 995



 Score =  253 bits (647), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 121/210 (57%), Positives = 152/210 (72%), Gaps = 6/210 (2%)

Query: 1165 DIIMNPHGLKGCDRITEYKEVPVSYKG--SVPSYLEKVLVSSNSEDAFLIKMLLRQTRRP 1222
            D + NPH +      T Y+  P SYKG       ++KV+++   E  F +K L+R TRRP
Sbjct: 897  DPLPNPHAMPD----TFYRPTPQSYKGPQGESCVVDKVMLTMTDEGVFNVKCLVRHTRRP 952

Query: 1223 EIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKA 1282
            E+GDKFSSRHGQKGVIG I+ Q D PF+E GI PD+IMNPHG+PSRMTVGK++EL+ GKA
Sbjct: 953  EVGDKFSSRHGQKGVIGTILPQRDFPFSERGITPDLIMNPHGFPSRMTVGKMLELVGGKA 1012

Query: 1283 GLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQK 1342
            G  +G + +GTAF G    D+   L+ HG++Y GKD+ + GITGE L AYI+ GPVYYQK
Sbjct: 1013 GAQDGRFHDGTAFAGDTAEDIGATLVNHGFSYNGKDLLHCGITGEPLVAYIFMGPVYYQK 1072

Query: 1343 LKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
            LKHMV DK+HAR+RGPRVVLTRQPT  R +
Sbjct: 1073 LKHMVLDKMHARARGPRVVLTRQPTEGRAR 1102



 Score =  231 bits (588), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 131/315 (41%), Positives = 189/315 (60%), Gaps = 25/315 (7%)

Query: 28  PGPAYIFFLLEGLQAILFLPLFKQ---VDFGDSKVVSLRELLSHVTYQKRLYRLTVQPNW 84
           P PAY   L+  LQ    L +F Q   +++  +KV +   +  +   + R  R+    + 
Sbjct: 313 PDPAYANLLIPSLQECSALAIFTQQQALEYCGAKVRTQSRMGGYQYGRNRRNRVDEARDI 372

Query: 85  LGTVKAVHGTYLTMVTDETSKLKDSPEIRDKWKLVLSFLKE---KGLVKPHIDSFDYFIN 141
           L  V   H   +              + R K   V   ++      + +  ID  DY+ N
Sbjct: 373 LAGVVLAHVPVVAY------------DFRGKCAYVAVMIRRILHAMIDRTQIDDKDYYGN 420

Query: 142 VEIKKLMQANANIYSDVDPLFYLKYLDIHVG-IADKIIPKI-KAAQFDIVNHMRQDTITN 199
             ++   Q  A ++ D       K L+  +   AD ++ K  +A QFDI+  +RQDT++N
Sbjct: 421 KRLELAGQLLALLFEDC-----FKRLNADLKRQADAVLSKSNRATQFDIIKCIRQDTLSN 475

Query: 200 ALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVSGPRSLQG 259
            L  AI +GNWT++RF+MER+GVTQVLSRLS+IS LGMMTRI SQFEKTRKVSGPR+LQ 
Sbjct: 476 GLEHAISSGNWTVKRFRMERKGVTQVLSRLSFISALGMMTRITSQFEKTRKVSGPRALQP 535

Query: 260 SQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMFNGEELSS 319
           SQWGMLCPSDTPEGE+CGLVKNLALMTH+TT+++E+ + K+ + +G + +++  G EL +
Sbjct: 536 SQWGMLCPSDTPEGESCGLVKNLALMTHVTTDDEEEPLRKLAFTLGTQPLSLICGAELHA 595

Query: 320 PGVYLVFVNGILAGI 334
           PG  +VF+NG + G+
Sbjct: 596 PGGAIVFLNGSILGV 610



 Score =  154 bits (388), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 77/132 (58%), Positives = 95/132 (71%), Gaps = 15/132 (11%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKR 751
           F+DFL  G +EYLDVNE N S+IA+ E+ I     THLEI PFT+LGVCAGI        
Sbjct: 682 FNDFLKRGLVEYLDVNEENISYIALYENEITRD-HTHLEIEPFTMLGVCAGI-------- 732

Query: 752 FHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTI 811
                 +PYPHHNQ+PRNTYQCAMGKQAMG I +NQ NR+DTLMY LVY Q+P+V++KTI
Sbjct: 733 ------IPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLNRMDTLMYLLVYPQKPIVKTKTI 786

Query: 812 RITNFHKLPAGK 823
            +  + +L AG+
Sbjct: 787 ELIGYDRLGAGQ 798



 Score =  107 bits (267), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 54/118 (45%), Positives = 79/118 (66%), Gaps = 6/118 (5%)

Query: 422 SSVTMHSQRTSPLLSCKKLR-QKRFQTY-----KKTPVDDARDFLSSTCIAHIPVINMRF 475
           S++ + +Q+ +      K+R Q R   Y     ++  VD+ARD L+   +AH+PV+   F
Sbjct: 329 SALAIFTQQQALEYCGAKVRTQSRMGGYQYGRNRRNRVDEARDILAGVVLAHVPVVAYDF 388

Query: 476 KMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
           + K  Y+AVMIRR++ A+ D   +DD+DYYGNKRLELAG LL+L+FED FKR N++LK
Sbjct: 389 RGKCAYVAVMIRRILHAMIDRTQIDDKDYYGNKRLELAGQLLALLFEDCFKRLNADLK 446



 Score = 79.3 bits (194), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/101 (42%), Positives = 58/101 (57%), Gaps = 18/101 (17%)

Query: 318 SSPGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIE 377
           + P  YL + N            V KP +EE +      TP +CRLRD+TY+AP+TVD E
Sbjct: 119 TDPSFYLRYTN----------IHVGKPCVEEDY-IVEDITPQQCRLRDMTYAAPVTVDAE 167

Query: 378 YTRGSQRVVR-------SDLVIGRMPIMLQSSKCVLRNKTE 411
           YTRG + V R         + IGR+P+ML+SS+CVL  K+E
Sbjct: 168 YTRGKEIVTRKTNEQGVGGITIGRIPLMLRSSRCVLTGKSE 208



 Score = 75.9 bits (185), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/63 (53%), Positives = 49/63 (77%), Gaps = 2/63 (3%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANAN--IYSDVDPLFYLKYLDI 169
           + DK++L+ +FLK +GLV+ HIDSF+Y IN EI+K+++A AN  +  D DP FYL+Y +I
Sbjct: 71  LEDKFELLPAFLKVRGLVRQHIDSFNYLINEEIRKIIRAKANERVTCDTDPSFYLRYTNI 130

Query: 170 HVG 172
           HVG
Sbjct: 131 HVG 133


>gi|239613518|gb|EEQ90505.1| DNA-directed RNA polymerase III polypeptide [Ajellomyces dermatitidis
            ER-3]
 gi|327357033|gb|EGE85890.1| DNA-directed RNA polymerase [Ajellomyces dermatitidis ATCC 18188]
          Length = 1228

 Score =  306 bits (784), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 145/266 (54%), Positives = 193/266 (72%), Gaps = 7/266 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I  NQ  RID+L+Y +VY Q+PMV+++TI +  
Sbjct: 761  GLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYTMVYPQKPMVKTRTIELIK 820

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQ+AT+AVMSYSGYDIEDAL++NK+S+DRGFGRC V+R     LK Y N T D+
Sbjct: 821  YDKLPAGQSATVAVMSYSGYDIEDALVLNKSSVDRGFGRCQVFRKYSTNLKSYSNGTKDK 880

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATP---- 1088
            + GP  + +   P+ +H  LD DG+ A GE++ + +V +NK  P  ++S+    +     
Sbjct: 881  LKGP--DRENGLPIRKHALLDSDGLAAVGEKVNQGEVYINKVTPENALSSGITGSDAGRP 938

Query: 1089 -EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
              Y   P +YK   PSY++KV++S+   +  LIK+  RQTR PE+GDKFSSRHGQKGV+G
Sbjct: 939  IAYIPSPQTYKLPDPSYIDKVMISATEAENQLIKVQTRQTRVPEVGDKFSSRHGQKGVVG 998

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            +I E  DMPF++ GI PDIIMNPHG 
Sbjct: 999  IIAEYADMPFSDLGIVPDIIMNPHGF 1024



 Score =  256 bits (655), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 124/231 (53%), Positives = 168/231 (72%), Gaps = 5/231 (2%)

Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHGLKGCD--RITEYKEVPVSYKGSVPSYLEKVL 1201
              +G  V Q ++  N+  + P+  ++  G+ G D  R   Y   P +YK   PSY++KV+
Sbjct: 904  AAVGEKVNQGEVYINK--VTPENALS-SGITGSDAGRPIAYIPSPQTYKLPDPSYIDKVM 960

Query: 1202 VSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMN 1261
            +S+   +  LIK+  RQTR PE+GDKFSSRHGQKGV+G+I E  DMPF++ GI PDIIMN
Sbjct: 961  ISATEAENQLIKVQTRQTRVPEVGDKFSSRHGQKGVVGIIAEYADMPFSDLGIVPDIIMN 1020

Query: 1262 PHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFY 1321
            PHG+PSRMTVGK++EL+AGKAG++ G +  GTAFGG+ + ++   L+ HG++Y GKD   
Sbjct: 1021 PHGFPSRMTVGKMLELIAGKAGILSGQFGYGTAFGGSPVEEMSAILVDHGFSYGGKDYLT 1080

Query: 1322 SGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
            SGITGE L AY++ GP+YYQKLKHMVQDK+H+R+RGPR +LTRQPT  R +
Sbjct: 1081 SGITGEPLPAYVFMGPIYYQKLKHMVQDKMHSRARGPRAILTRQPTEGRSR 1131



 Score =  206 bits (525), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 108/206 (52%), Positives = 142/206 (68%), Gaps = 7/206 (3%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPK-IKAAQFDI--V 189
           +D  DY  N  ++   Q  A ++ D   LF     DI + I DK++ K ++  QFD   V
Sbjct: 439 VDDRDYVGNKRLELAGQLLALLFED---LFKKFQFDIKMNI-DKVLKKPVRTEQFDAYGV 494

Query: 190 NHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
             +  + IT  +  AI TGNW+++RF+MER GVT VLSRLSYI+ LGMMTRI+SQFEKTR
Sbjct: 495 VAIHGNHITQGMNRAISTGNWSLKRFRMERAGVTHVLSRLSYIAALGMMTRISSQFEKTR 554

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHI 309
           KVSGPR+LQ SQ+GMLCPSDTPEGEACGLVKNLALMTHITT ++E+ + K+++ +G E +
Sbjct: 555 KVSGPRALQPSQFGMLCPSDTPEGEACGLVKNLALMTHITTNDEEEPVRKLIFALGAEDV 614

Query: 310 AMFNGEELSSPGVYLVFVNGILAGIT 335
               G EL   G Y++F+NG    +T
Sbjct: 615 QTVGGRELHGQGAYIIFLNGSPIALT 640



 Score =  157 bits (396), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 77/137 (56%), Positives = 93/137 (67%), Gaps = 15/137 (10%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G   FDDFL  G +EYLD NE NDS+IAV E  I    TTHLEI PFT+LG  AG     
Sbjct: 708 GSMEFDDFLAHGLVEYLDCNEENDSYIAVYEEDITDS-TTHLEIEPFTILGAVAG----- 761

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQA+G I  NQ  RID+L+Y +VY Q+PMV+
Sbjct: 762 ---------LIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYTMVYPQKPMVK 812

Query: 808 SKTIRITNFHKLPAGKC 824
           ++TI +  + KLPAG+ 
Sbjct: 813 TRTIELIKYDKLPAGQS 829



 Score = 97.4 bits (241), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 44/89 (49%), Positives = 66/89 (74%)

Query: 445 FQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDY 504
           F   ++  V +A + +SS  I+H+ V N+ F+ KA+Y+A M RR+++A  DP ++DDRDY
Sbjct: 385 FGITRRNHVQEAIEAISSVIISHVVVENLNFRPKALYVAHMARRVLMAKHDPSLVDDRDY 444

Query: 505 YGNKRLELAGSLLSLMFEDVFKRFNSELK 533
            GNKRLELAG LL+L+FED+FK+F  ++K
Sbjct: 445 VGNKRLELAGQLLALLFEDLFKKFQFDIK 473



 Score = 92.0 bits (227), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 41/67 (61%), Positives = 50/67 (74%)

Query: 345 EIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKC 404
           E +  F+     TP+ECRLRD+TY+API VD EY RG QRV R+   IGRMP+ML+SSKC
Sbjct: 169 EQDSKFDVASTITPNECRLRDMTYAAPILVDFEYVRGRQRVKRNGTAIGRMPVMLRSSKC 228

Query: 405 VLRNKTE 411
           VL NK+E
Sbjct: 229 VLSNKSE 235



 Score = 82.8 bits (203), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/59 (59%), Positives = 50/59 (84%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           DKW L+ +FLK KGLVK HIDS++YF+ V++KK++QA+A I SDVDP FY+++ DI++G
Sbjct: 103 DKWNLLPAFLKVKGLVKQHIDSYNYFVEVQLKKIVQASAEIRSDVDPNFYIRFHDIYLG 161


>gi|225554621|gb|EEH02917.1| DNA-directed RNA polymerase III polypeptide [Ajellomyces capsulatus
            G186AR]
          Length = 1227

 Score =  306 bits (784), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 145/266 (54%), Positives = 191/266 (71%), Gaps = 7/266 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I  NQ  RID+L+Y +VY Q+PMV+++TI +  
Sbjct: 760  GLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYTMVYPQKPMVKTRTIELIK 819

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQ+AT+AVMSYSGYDIEDAL++NK S+DRGFGRC V+R     LK Y N T D+
Sbjct: 820  YDKLPAGQSATVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYSTNLKSYSNGTKDK 879

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATP---- 1088
            + GP  + +   P+ +H  LD DG+ A GE++   +V +NK  P  ++S+    +     
Sbjct: 880  LKGP--DRENGVPIRKHALLDNDGLAAVGEKVNHGEVYINKVTPENALSSGITGSDAGRP 937

Query: 1089 -EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
              Y   P +YK   PSY++KV++S+   +  LIK+  RQTR PE+GDKFSSRHGQKGV+G
Sbjct: 938  IAYIPSPQTYKLPDPSYIDKVMISATEAENQLIKVQTRQTRVPEVGDKFSSRHGQKGVVG 997

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            +I E  DMPF++ GI PDIIMNPHG 
Sbjct: 998  IIAEHADMPFSDLGIVPDIIMNPHGF 1023



 Score =  257 bits (657), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 119/203 (58%), Positives = 155/203 (76%), Gaps = 2/203 (0%)

Query: 1172 GLKGCD--RITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFS 1229
            G+ G D  R   Y   P +YK   PSY++KV++S+   +  LIK+  RQTR PE+GDKFS
Sbjct: 928  GITGSDAGRPIAYIPSPQTYKLPDPSYIDKVMISATEAENQLIKVQTRQTRVPEVGDKFS 987

Query: 1230 SRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNY 1289
            SRHGQKGV+G+I E  DMPF++ GI PDIIMNPHG+PSRMTVGK++EL+AGKAG++ G +
Sbjct: 988  SRHGQKGVVGIIAEHADMPFSDLGIVPDIIMNPHGFPSRMTVGKMLELIAGKAGILSGQF 1047

Query: 1290 KEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQD 1349
              GTAFGG+ + ++   L+ HG++Y GKD   SGITGE L AY++ GP+YYQKLKHMVQD
Sbjct: 1048 GYGTAFGGSPVEEMSAILVDHGFSYGGKDYLTSGITGEPLPAYVFMGPIYYQKLKHMVQD 1107

Query: 1350 KIHARSRGPRVVLTRQPTGRRWK 1372
            K+H+R+RGPR +LTRQPT  R +
Sbjct: 1108 KMHSRARGPRAILTRQPTEGRSR 1130



 Score =  207 bits (526), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 124/280 (44%), Positives = 168/280 (60%), Gaps = 21/280 (7%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPK-IKAAQFDI--V 189
           +D  DY  N  ++   Q  A ++ D   LF     DI + I DK++ K ++  QFD   V
Sbjct: 438 VDDRDYVGNKRLELAGQLLALLFED---LFKKFQFDIKMNI-DKVLKKPVRTEQFDAYGV 493

Query: 190 NHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
             +  + IT  +  AI TGNW+++RF+MER GVT VLSRLSYI+ LGMMTRI+SQFEKTR
Sbjct: 494 VAIHGNHITQGMNRAISTGNWSLKRFRMERAGVTHVLSRLSYIAALGMMTRISSQFEKTR 553

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHI 309
           KVSGPR+LQ SQ+GMLCPSDTPEGEACGLVKNLALMTHITT ++E+ + K+++ +G E +
Sbjct: 554 KVSGPRALQPSQFGMLCPSDTPEGEACGLVKNLALMTHITTNDEEEPVRKLIFALGAEDV 613

Query: 310 AMFNGEELSSPGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHECRLRDLTYS 369
               G EL   G Y++F+NG    +T   K         SF   R+T            S
Sbjct: 614 QTVGGRELHGQGAYIIFLNGSPIALTRRPKFFLN-----SFRRLRRTG---------RVS 659

Query: 370 APITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNK 409
             I+V I + + +  V   D  I R  I+++  K  + N+
Sbjct: 660 EFISVFINHHQNAVHVATDDGRICRPLIIVEDGKSKVTNR 699



 Score =  156 bits (395), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 77/137 (56%), Positives = 93/137 (67%), Gaps = 15/137 (10%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G   FDDFL  G +EYLD NE NDS+IAV E  I    TTHLEI PFT+LG  AG     
Sbjct: 707 GTMEFDDFLAHGLVEYLDCNEENDSYIAVYEEDITQS-TTHLEIEPFTILGAVAG----- 760

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQA+G I  NQ  RID+L+Y +VY Q+PMV+
Sbjct: 761 ---------LIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYTMVYPQKPMVK 811

Query: 808 SKTIRITNFHKLPAGKC 824
           ++TI +  + KLPAG+ 
Sbjct: 812 TRTIELIKYDKLPAGQS 828



 Score = 97.4 bits (241), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 44/89 (49%), Positives = 66/89 (74%)

Query: 445 FQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDY 504
           F   ++  V +A + +SS  I+H+ V N+ F+ KA+Y+A M RR+++A  DP ++DDRDY
Sbjct: 384 FGITRRNHVQEAIEAISSVIISHVVVENLNFRPKALYVAHMARRVLMAKHDPSLVDDRDY 443

Query: 505 YGNKRLELAGSLLSLMFEDVFKRFNSELK 533
            GNKRLELAG LL+L+FED+FK+F  ++K
Sbjct: 444 VGNKRLELAGQLLALLFEDLFKKFQFDIK 472



 Score = 91.7 bits (226), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 41/67 (61%), Positives = 50/67 (74%)

Query: 345 EIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKC 404
           E +  F+     TP+ECRLRD+TY+API VD EY RG QRV R+   IGRMP+ML+SSKC
Sbjct: 168 EQDSKFDLASTITPNECRLRDMTYAAPILVDFEYVRGRQRVKRNGTAIGRMPVMLRSSKC 227

Query: 405 VLRNKTE 411
           VL NK+E
Sbjct: 228 VLSNKSE 234



 Score = 82.8 bits (203), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/60 (58%), Positives = 51/60 (85%)

Query: 113 RDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           +DKW L+ +FLK KGLVK HIDS++YF+ V++KK++QA+A I SDVDP FY+++ DI++G
Sbjct: 101 QDKWNLLPAFLKIKGLVKQHIDSYNYFVEVQLKKIVQASAEIRSDVDPNFYIRFHDIYLG 160


>gi|209876614|ref|XP_002139749.1| DNA-directed RNA polymerase, beta subunit family protein
            [Cryptosporidium muris RN66]
 gi|209555355|gb|EEA05400.1| DNA-directed RNA polymerase, beta subunit family protein
            [Cryptosporidium muris RN66]
          Length = 1219

 Score =  305 bits (781), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 148/289 (51%), Positives = 204/289 (70%), Gaps = 10/289 (3%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYP+HNQ+PRNTYQCAMGKQ MG +G NQ  R D+++Y LVY Q+P+ +++TI + N
Sbjct: 757  GLIPYPNHNQSPRNTYQCAMGKQVMGVVGLNQFLRCDSILYLLVYPQKPLCKTRTIEMIN 816

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F +LPAGQN+++A+MSY+GYDIEDA+IMNKAS+DRGF RC V +     L++ PN   + 
Sbjct: 817  FEQLPAGQNSSVAIMSYTGYDIEDAIIMNKASIDRGFARCFVIKRQTVELQKLPNGLAEC 876

Query: 1033 ILGP--LLEADTRKPVYRH--RALDQDGIVAPGEQICERQVLVNKSMPTISVSAI----S 1084
            ++GP  LL+  + K VY      L++DGI   GE + E  ++VNK  P  +   +     
Sbjct: 877  VIGPNKLLDNSSTK-VYNSNWNVLEEDGICRVGEMVAEDDIIVNKVSPINTREYVGDPSQ 935

Query: 1085 MATPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKG 1144
            +   EY+  P+ YKG  PSY+++VL++ NSE + + K++ RQTR PE+GDKFSSRHGQKG
Sbjct: 936  VNLSEYRLTPIKYKGIAPSYIDRVLLTENSEGSHIYKIITRQTRLPELGDKFSSRHGQKG 995

Query: 1145 VIGLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSV 1193
            V+GLIV QED PF+ESG CPD+IMNPHG      + +  E+ +S K SV
Sbjct: 996  VVGLIVSQEDFPFSESGWCPDLIMNPHGFPSRMTVGKLMEL-ISSKASV 1043



 Score =  273 bits (698), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 127/227 (55%), Positives = 173/227 (76%), Gaps = 2/227 (0%)

Query: 1146 IGLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSN 1205
            +G +V ++D+  N+  + P       G      ++EY+  P+ YKG  PSY+++VL++ N
Sbjct: 907  VGEMVAEDDIIVNK--VSPINTREYVGDPSQVNLSEYRLTPIKYKGIAPSYIDRVLLTEN 964

Query: 1206 SEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGY 1265
            SE + + K++ RQTR PE+GDKFSSRHGQKGV+GLIV QED PF+ESG CPD+IMNPHG+
Sbjct: 965  SEGSHIYKIITRQTRLPELGDKFSSRHGQKGVVGLIVSQEDFPFSESGWCPDLIMNPHGF 1024

Query: 1266 PSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGIT 1325
            PSRMTVGKL+EL++ KA +++GNY+ GTAFGGT + D  + LI++G++Y GK+   SGIT
Sbjct: 1025 PSRMTVGKLMELISSKASVLDGNYRYGTAFGGTPVEDAAKCLIQNGFHYSGKEYLTSGIT 1084

Query: 1326 GEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
            GEA+E YI+ GP++YQKL+HMV DK+HAR RGPR +LTRQPT  R K
Sbjct: 1085 GEAIETYIFVGPIFYQKLRHMVLDKMHARGRGPRQILTRQPTEGRSK 1131



 Score =  179 bits (453), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 85/163 (52%), Positives = 116/163 (71%), Gaps = 15/163 (9%)

Query: 187 DIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFE 246
           D   ++  D IT  +  A+ TGNW+I+RF+MER G+TQVLSR SYIS LG+MTR++SQFE
Sbjct: 473 DCFRNLPTDIITRGMQTALSTGNWSIKRFRMERSGMTQVLSRYSYISALGIMTRVDSQFE 532

Query: 247 KTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGI 306
           K RKVSGPR+LQ SQWG+LCP DTPEGE+CGLVKNLAL THITT+++ + ++ +++++G+
Sbjct: 533 KARKVSGPRALQPSQWGILCPCDTPEGESCGLVKNLALTTHITTDHNPQYLIGLLFSLGV 592

Query: 307 EHIA---MFNGEELSSPG------------VYLVFVNGILAGI 334
           + IA    F  ++ S  G             Y +F+NG L GI
Sbjct: 593 QDIASASWFEWKQHSQDGNTSLREHNLSGNAYFIFINGALLGI 635



 Score =  132 bits (332), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 63/132 (47%), Positives = 89/132 (67%), Gaps = 15/132 (11%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKR 751
           F+D + +G +E++DVNE N+  IA+ E  I    TTH+EI P  +LGV +G         
Sbjct: 708 FNDLINKGILEWIDVNEENNLLIALKEENITEE-TTHVEIDPLAILGVVSG--------- 757

Query: 752 FHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTI 811
                L+PYP+HNQ+PRNTYQCAMGKQ MG +G NQ  R D+++Y LVY Q+P+ +++TI
Sbjct: 758 -----LIPYPNHNQSPRNTYQCAMGKQVMGVVGLNQFLRCDSILYLLVYPQKPLCKTRTI 812

Query: 812 RITNFHKLPAGK 823
            + NF +LPAG+
Sbjct: 813 EMINFEQLPAGQ 824



 Score = 80.1 bits (196), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 57/82 (69%)

Query: 453 VDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLEL 512
           ++D  + L+   ++H+  I    + KA+ L +M RR++ A  +  +LDD+DYYGNKR+EL
Sbjct: 360 IEDVLETLNRVVLSHVGTIYGDLRPKALILCLMARRVIDASENQSLLDDKDYYGNKRIEL 419

Query: 513 AGSLLSLMFEDVFKRFNSELKE 534
           AG L+S++FED+FKRF S  K+
Sbjct: 420 AGQLISILFEDLFKRFASLTKK 441



 Score = 70.5 bits (171), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 49/70 (70%), Gaps = 1/70 (1%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQ 400
           V  P++EE+   T   TP  CR+RD+TY+API VD++Y RG+  V + ++ IGR+P+ML+
Sbjct: 101 VGMPKLEENM-VTIDLTPMMCRMRDITYAAPIYVDVDYVRGNNVVRKKNVEIGRIPVMLR 159

Query: 401 SSKCVLRNKT 410
           S  C+L  KT
Sbjct: 160 SKVCILYGKT 169



 Score = 70.1 bits (170), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 53/70 (75%), Gaps = 2/70 (2%)

Query: 106 LKDSPEIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANAN--IYSDVDPLFY 163
           LK    + +KW+++  FLK +GLVK HI+S++YF+ V+I+ +++A++N  I SDVDP F+
Sbjct: 34  LKPVDSLIEKWRILPHFLKTEGLVKHHIESYNYFVTVDIRNIIRAHSNRFIKSDVDPSFF 93

Query: 164 LKYLDIHVGI 173
           +++LD  VG+
Sbjct: 94  IEFLDARVGM 103


>gi|392577194|gb|EIW70323.1| hypothetical protein TREMEDRAFT_29095 [Tremella mesenterica DSM 1558]
          Length = 1128

 Score =  305 bits (781), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 145/261 (55%), Positives = 190/261 (72%), Gaps = 5/261 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G IGYNQ NRIDTL+Y + Y Q+PMV++KTI +  
Sbjct: 675  GLIPYPHHNQSPRNTYQCAMGKQAIGAIGYNQLNRIDTLLYLMTYPQQPMVKTKTIELIE 734

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+AVMS+SGYDIEDALI+NKAS+DRGFGRC V +     ++ + N T +R
Sbjct: 735  YDKLPAGQNATVAVMSFSGYDIEDALILNKASVDRGFGRCHVLKKQTIPMRHFQNGTSER 794

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKE 1092
               P   +D  +P         DG+ +PG  + +  VLV++  P  +   ++ A   +K 
Sbjct: 795  TAYP---SDPLRPEAYASVDKADGVTSPGSTVYQGDVLVHRETPIDTRGPMTQAA-VFKA 850

Query: 1093 VPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQ 1152
             P+++K   P  ++KV++ +  ED+ L+K+L RQTR+PE+GDKFSSRHGQKGV GLIV Q
Sbjct: 851  TPITHKTPEPVQIDKVML-TEGEDSPLLKILTRQTRQPELGDKFSSRHGQKGVCGLIVPQ 909

Query: 1153 EDMPFNESGICPDIIMNPHGL 1173
             DMPFN+ GICPDIIMNPHG 
Sbjct: 910  TDMPFNDQGICPDIIMNPHGF 930



 Score =  262 bits (670), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 123/191 (64%), Positives = 153/191 (80%), Gaps = 1/191 (0%)

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
            +K  P+++K   P  ++KV+++   ED+ L+K+L RQTR+PE+GDKFSSRHGQKGV GLI
Sbjct: 848  FKATPITHKTPEPVQIDKVMLTEG-EDSPLLKILTRQTRQPELGDKFSSRHGQKGVCGLI 906

Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
            V Q DMPFN+ GICPDIIMNPHG+PSRMTVGK+IELLAGKAG++ G  + GTAFGG+K+ 
Sbjct: 907  VPQTDMPFNDQGICPDIIMNPHGFPSRMTVGKMIELLAGKAGVLAGQLQYGTAFGGSKVE 966

Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
            D+   LI +G++Y GKD+  SGITGE LEAY+Y GP+YYQKLKHMV DK+HAR  GPR  
Sbjct: 967  DMSRILIENGFSYAGKDMLTSGITGEPLEAYVYFGPIYYQKLKHMVMDKMHARPTGPRAN 1026

Query: 1362 LTRQPTGRRWK 1372
            LTRQPT  R K
Sbjct: 1027 LTRQPTEGRSK 1037



 Score =  196 bits (499), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 99/172 (57%), Positives = 125/172 (72%), Gaps = 3/172 (1%)

Query: 175 DKIIPKI-KAAQFDIVNHMRQ--DTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSY 231
           DKI+ K  +A   D  N + Q  D+IT+A   +I TGNW+++RF +ER GVT VLSRLS+
Sbjct: 391 DKILEKPNRATPLDASNILAQNGDSITSAFVRSISTGNWSLKRFHVERAGVTHVLSRLSF 450

Query: 232 ISGLGMMTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTE 291
           I+ LGMMTRI+SQFEKTRKVSGPR+LQ SQWG+LCPSDTPEGEACGLVKNLALMTHITT+
Sbjct: 451 IAALGMMTRISSQFEKTRKVSGPRALQPSQWGVLCPSDTPEGEACGLVKNLALMTHITTD 510

Query: 292 NDEKNMLKIMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAGITCHHKEVCK 343
             E  ++   +  G + I  F G  +   GVYL+ +NG L G+T H K+  +
Sbjct: 511 VPEGPLVDYAFTYGAQDINTFTGVGMYGRGVYLIQINGSLIGLTNHPKKFVQ 562



 Score =  161 bits (408), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 85/150 (56%), Positives = 99/150 (66%), Gaps = 18/150 (12%)

Query: 677 RPTFLNMHQFL---GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAP 733
           RP   + H  L   G   FD FL  G +EYLDVNE NDS IA  E  I  G TTHLEI P
Sbjct: 608 RPRVTSEHIRLLKEGKVTFDHFLRSGLVEYLDVNEENDSLIACYEHEIEEG-TTHLEIEP 666

Query: 734 FTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDT 793
           FT+LG  AG              L+PYPHHNQ+PRNTYQCAMGKQA+G IGYNQ NRIDT
Sbjct: 667 FTILGAVAG--------------LIPYPHHNQSPRNTYQCAMGKQAIGAIGYNQLNRIDT 712

Query: 794 LMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
           L+Y + Y Q+PMV++KTI +  + KLPAG+
Sbjct: 713 LLYLMTYPQQPMVKTKTIELIEYDKLPAGQ 742



 Score = 94.4 bits (233), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 46/93 (49%), Positives = 64/93 (68%)

Query: 441 RQKRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLD 500
           ++K  +  K  P + A   L++  + H+ V NM F+ K +YLA M RR+++A  D  M+D
Sbjct: 295 QEKEDRGQKLAPSEVAMQALAAMVLGHVLVRNMFFRPKCIYLATMARRVLMASIDEKMVD 354

Query: 501 DRDYYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
           DRDY GNKRLELAG LLSL+FED FK +NS+L+
Sbjct: 355 DRDYVGNKRLELAGQLLSLLFEDSFKTYNSDLR 387



 Score = 81.3 bits (199), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 32/61 (52%), Positives = 50/61 (81%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           + DKW+L+ +FL+ KGLVK H+DSF+YF+NV+IK ++ AN+ + SDV+P F+++Y DI +
Sbjct: 21  VEDKWQLLPAFLQVKGLVKQHLDSFNYFVNVDIKAILAANSIVTSDVNPHFFIRYTDIRI 80

Query: 172 G 172
           G
Sbjct: 81  G 81



 Score = 61.2 bits (147), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 40/55 (72%)

Query: 357 TPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKTE 411
           TP ECRLRD++Y+A I VDIEYT   +   +  ++IG++P+ML+S  C L+ K+E
Sbjct: 96  TPMECRLRDISYAAEIRVDIEYTYEDKLKKQKGILIGKLPVMLRSDLCHLKGKSE 150


>gi|255569145|ref|XP_002525541.1| DNA-directed RNA polymerase III subunit, putative [Ricinus communis]
 gi|223535120|gb|EEF36800.1| DNA-directed RNA polymerase III subunit, putative [Ricinus communis]
          Length = 1139

 Score =  305 bits (781), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 146/267 (54%), Positives = 191/267 (71%), Gaps = 12/267 (4%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+P+PHHNQ+PRNTYQCAMGKQAMG I YNQ  R+D+L+Y LVY QRP++ ++TI +  
Sbjct: 671  GLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNQLFRMDSLLYLLVYPQRPLLTTRTIELVG 730

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KL AGQNAT+AVMSYSGYDIEDA++MNKASLDRGFGRC+V +    + ++Y N   DR
Sbjct: 731  YDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVMKKYPAIRQKYENGASDR 790

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISV----SAISMATP 1088
            IL P       + V R R LD DG+ APGE I    + V K  P  ++    S+ ++   
Sbjct: 791  ILRP------DRTVERERVLDYDGLAAPGEIIKPSDIYVKKECPIDTMGPVKSSAALENI 844

Query: 1089 EYKEVPVSYKG--SVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVI 1146
            +Y+  P+SYKG       +++V +SS+  +   IK+++R TRRPE+GDKFSSRHGQKGV 
Sbjct: 845  KYRPSPLSYKGPEGESPVIDRVALSSDRNNNLCIKVMIRHTRRPEVGDKFSSRHGQKGVC 904

Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G I++QED PF+E GICPD+IMNPHG 
Sbjct: 905  GTIIQQEDFPFSERGICPDLIMNPHGF 931



 Score =  246 bits (627), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 119/217 (54%), Positives = 152/217 (70%), Gaps = 7/217 (3%)

Query: 1163 CPDIIMNPHGLKGCDRITEYKEVPVSYKG--SVPSYLEKVLVSSNSEDAFLIKMLLRQTR 1220
            CP   M P          +Y+  P+SYKG       +++V +SS+  +   IK+++R TR
Sbjct: 827  CPIDTMGPVKSSAALENIKYRPSPLSYKGPEGESPVIDRVALSSDRNNNLCIKVMIRHTR 886

Query: 1221 RPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAG 1280
            RPE+GDKFSSRHGQKGV G I++QED PF+E GICPD+IMNPHG+PSRMTVGK+IELL G
Sbjct: 887  RPEVGDKFSSRHGQKGVCGTIIQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGG 946

Query: 1281 KAGLMEGNYKEGTAFG-----GTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYS 1335
            KAG+  G +  G+AFG        +  + E L+  G++Y GKDI YSGITG  L+AYI+ 
Sbjct: 947  KAGVSCGRFHYGSAFGEPSGHADTVEAISETLVNRGFSYNGKDIIYSGITGCPLQAYIFM 1006

Query: 1336 GPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
            GP+YYQKLKHMV DK+HAR  GPRV+LTRQPT  R +
Sbjct: 1007 GPIYYQKLKHMVLDKMHARGNGPRVMLTRQPTEGRAR 1043



 Score =  207 bits (526), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 100/216 (46%), Positives = 148/216 (68%), Gaps = 3/216 (1%)

Query: 118 LVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKI 177
           ++L  + E  L K  +D  DY  N  ++   Q  + ++ D   LF     ++   I   +
Sbjct: 336 VMLRRMMEAMLNKDAMDDKDYVGNKRLELSGQLISLLFED---LFKTMITEVQRTIDTVL 392

Query: 178 IPKIKAAQFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGM 237
             + ++++FD+  ++ +D ITN L   + TGN+ ++RFKM R+G+TQVL RLSYI+ LGM
Sbjct: 393 TKQNRSSRFDLAQYIVRDNITNGLERTLSTGNFDVKRFKMHRKGMTQVLVRLSYIASLGM 452

Query: 238 MTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNM 297
           MTR++ QFEK+RKVSGPR+LQ SQWGMLCP DTPEGEACGLVKNLALMTH+TT+++E  +
Sbjct: 453 MTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDDEEGPL 512

Query: 298 LKIMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAG 333
           + + Y +G+E + + +GEEL +P  +LV  NG++ G
Sbjct: 513 ISLCYCLGVEDLELLSGEELHTPNSFLVIFNGLILG 548



 Score =  155 bits (392), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 75/136 (55%), Positives = 96/136 (70%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G + FDDFL +G IEYLDVNE N++ +A+ E    P  TTH+EI PFT+LGVCAG     
Sbjct: 618 GVRTFDDFLRDGLIEYLDVNEENNALVALYEGEATPE-TTHIEIEPFTILGVCAG----- 671

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+P+PHHNQ+PRNTYQCAMGKQAMG I YNQ  R+D+L+Y LVY QRP++ 
Sbjct: 672 ---------LIPFPHHNQSPRNTYQCAMGKQAMGNIAYNQLFRMDSLLYLLVYPQRPLLT 722

Query: 808 SKTIRITNFHKLPAGK 823
           ++TI +  + KL AG+
Sbjct: 723 TRTIELVGYDKLGAGQ 738



 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/94 (42%), Positives = 62/94 (65%)

Query: 442 QKRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDD 501
           Q++   Y     + A   L    +A++PV    F+ K +Y+AVM+RRM+ A+ + D +DD
Sbjct: 294 QQKALEYLDGKENRALTILRDVFLANVPVHKNNFRPKCLYVAVMLRRMMEAMLNKDAMDD 353

Query: 502 RDYYGNKRLELAGSLLSLMFEDVFKRFNSELKET 535
           +DY GNKRLEL+G L+SL+FED+FK   +E++ T
Sbjct: 354 KDYVGNKRLELSGQLISLLFEDLFKTMITEVQRT 387



 Score = 76.3 bits (186), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/122 (40%), Positives = 65/122 (53%), Gaps = 31/122 (25%)

Query: 303 NIGIEHIAMFNGEELSS--PGVYLVFVN-------GILAGITCHHKEVCKPEIEESFNYT 353
           NIGI+ I   N   +S+  PG+YL F +        I+ G++                  
Sbjct: 63  NIGIKKIVRANDRIVSTVDPGIYLRFKDVRIGTPSDIMDGVS------------------ 104

Query: 354 RQTTPHECRLRDLTYSAPITVDIEYTRGSQ----RVVRSDLVIGRMPIMLQSSKCVLRNK 409
            Q +PH CRL D TY+API V++EY  GS     RV ++D+VIGRMPIML+S  CVL  K
Sbjct: 105 EQLSPHMCRLSDKTYAAPILVNVEYIYGSHDQKTRVEKNDVVIGRMPIMLRSRSCVLYGK 164

Query: 410 TE 411
            E
Sbjct: 165 DE 166



 Score = 74.3 bits (181), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 32/65 (49%), Positives = 48/65 (73%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGI 173
           DK++L+  FLK +GLVK H+DSF+YF+N+ IKK+++AN  I S VDP  YL++ D+ +G 
Sbjct: 36  DKFQLLPEFLKVRGLVKQHLDSFNYFVNIGIKKIVRANDRIVSTVDPGIYLRFKDVRIGT 95

Query: 174 ADKII 178
              I+
Sbjct: 96  PSDIM 100


>gi|325094900|gb|EGC48210.1| DNA-directed RNA polymerase III [Ajellomyces capsulatus H88]
          Length = 1227

 Score =  305 bits (781), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 145/266 (54%), Positives = 191/266 (71%), Gaps = 7/266 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I  NQ  RID+L+Y +VY Q+PMV+++TI +  
Sbjct: 760  GLIPYPHHNQSPRNTYQCAMGKQAIGVIANNQFLRIDSLLYTMVYPQKPMVKTRTIELIK 819

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQ+AT+AVMSYSGYDIEDAL++NK S+DRGFGRC V+R     LK Y N T D+
Sbjct: 820  YDKLPAGQSATVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYSTNLKSYSNGTKDK 879

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATP---- 1088
            + GP  + +   P+ +H  LD DG+ A GE++   +V +NK  P  ++S+    +     
Sbjct: 880  LKGP--DRENGVPIRKHALLDNDGLAAVGEKVNYGEVYINKVTPENALSSGITGSDAGRP 937

Query: 1089 -EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
              Y   P +YK   PSY++KV++S+   +  LIK+  RQTR PE+GDKFSSRHGQKGV+G
Sbjct: 938  IAYIPSPQTYKLPDPSYIDKVMISATEAENQLIKVQTRQTRVPEVGDKFSSRHGQKGVVG 997

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            +I E  DMPF++ GI PDIIMNPHG 
Sbjct: 998  IIAEHADMPFSDLGIVPDIIMNPHGF 1023



 Score =  257 bits (657), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 119/203 (58%), Positives = 155/203 (76%), Gaps = 2/203 (0%)

Query: 1172 GLKGCD--RITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFS 1229
            G+ G D  R   Y   P +YK   PSY++KV++S+   +  LIK+  RQTR PE+GDKFS
Sbjct: 928  GITGSDAGRPIAYIPSPQTYKLPDPSYIDKVMISATEAENQLIKVQTRQTRVPEVGDKFS 987

Query: 1230 SRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNY 1289
            SRHGQKGV+G+I E  DMPF++ GI PDIIMNPHG+PSRMTVGK++EL+AGKAG++ G +
Sbjct: 988  SRHGQKGVVGIIAEHADMPFSDLGIVPDIIMNPHGFPSRMTVGKMLELIAGKAGILSGQF 1047

Query: 1290 KEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQD 1349
              GTAFGG+ + ++   L+ HG++Y GKD   SGITGE L AY++ GP+YYQKLKHMVQD
Sbjct: 1048 GYGTAFGGSPVEEMSAILVDHGFSYGGKDYLTSGITGEPLPAYVFMGPIYYQKLKHMVQD 1107

Query: 1350 KIHARSRGPRVVLTRQPTGRRWK 1372
            K+H+R+RGPR +LTRQPT  R +
Sbjct: 1108 KMHSRARGPRAILTRQPTEGRSR 1130



 Score =  206 bits (523), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 123/280 (43%), Positives = 168/280 (60%), Gaps = 21/280 (7%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPK-IKAAQFDI--V 189
           +D  DY  N  ++   Q  A ++ D   LF     DI + I DK++ K ++  QFD   V
Sbjct: 438 VDDRDYVGNKRLELAGQLLALLFED---LFKKFQFDIKMNI-DKVLKKPVRTEQFDAYGV 493

Query: 190 NHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
             +  + IT  +  AI TGNW+++RF+MER GVT VLSRLSYI+ LGM+TRI+SQFEKTR
Sbjct: 494 VAIHGNHITQGMNRAISTGNWSLKRFRMERAGVTHVLSRLSYIAALGMLTRISSQFEKTR 553

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHI 309
           KVSGPR+LQ SQ+GMLCPSDTPEGEACGLVKNLALMTHITT ++E+ + K+++ +G E +
Sbjct: 554 KVSGPRALQPSQFGMLCPSDTPEGEACGLVKNLALMTHITTNDEEEPVRKLIFALGAEDV 613

Query: 310 AMFNGEELSSPGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHECRLRDLTYS 369
               G EL   G Y++F+NG    +T   K         SF   R+T            S
Sbjct: 614 QTVGGRELHGQGAYIIFLNGSPIALTRRPKFFLN-----SFRRLRRTG---------RVS 659

Query: 370 APITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNK 409
             I+V I + + +  V   D  I R  I+++  K  + N+
Sbjct: 660 EFISVFINHHQNAVHVATDDGRICRPLIIVEDGKSKVTNR 699



 Score =  156 bits (395), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 77/136 (56%), Positives = 93/136 (68%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G   FDDFL  G +EYLD NE NDS+IAV E  I    TTHLEI PFT+LG  AG     
Sbjct: 707 GTMEFDDFLAHGLVEYLDCNEENDSYIAVYEEDITQS-TTHLEIEPFTILGAVAG----- 760

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQA+G I  NQ  RID+L+Y +VY Q+PMV+
Sbjct: 761 ---------LIPYPHHNQSPRNTYQCAMGKQAIGVIANNQFLRIDSLLYTMVYPQKPMVK 811

Query: 808 SKTIRITNFHKLPAGK 823
           ++TI +  + KLPAG+
Sbjct: 812 TRTIELIKYDKLPAGQ 827



 Score = 97.4 bits (241), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 44/89 (49%), Positives = 66/89 (74%)

Query: 445 FQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDY 504
           F   ++  V +A + +SS  I+H+ V N+ F+ KA+Y+A M RR+++A  DP ++DDRDY
Sbjct: 384 FGITRRNHVQEAIEAISSVIISHVVVENLNFRPKALYVAHMARRVLMAKHDPSLVDDRDY 443

Query: 505 YGNKRLELAGSLLSLMFEDVFKRFNSELK 533
            GNKRLELAG LL+L+FED+FK+F  ++K
Sbjct: 444 VGNKRLELAGQLLALLFEDLFKKFQFDIK 472



 Score = 91.7 bits (226), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 41/67 (61%), Positives = 50/67 (74%)

Query: 345 EIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKC 404
           E +  F+     TP+ECRLRD+TY+API VD EY RG QRV R+   IGRMP+ML+SSKC
Sbjct: 168 EQDSKFDLASTITPNECRLRDMTYAAPILVDFEYVRGRQRVKRNGTAIGRMPVMLRSSKC 227

Query: 405 VLRNKTE 411
           VL NK+E
Sbjct: 228 VLSNKSE 234



 Score = 82.8 bits (203), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/60 (58%), Positives = 51/60 (85%)

Query: 113 RDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           +DKW L+ +FLK KGLVK HIDS++YF+ V++KK++QA+A I SDVDP FY+++ DI++G
Sbjct: 101 QDKWNLLPAFLKIKGLVKQHIDSYNYFVEVQLKKIVQASAEIRSDVDPNFYIRFHDIYLG 160


>gi|240276965|gb|EER40475.1| DNA-directed RNA polymerase III [Ajellomyces capsulatus H143]
          Length = 1227

 Score =  305 bits (781), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 145/266 (54%), Positives = 191/266 (71%), Gaps = 7/266 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I  NQ  RID+L+Y +VY Q+PMV+++TI +  
Sbjct: 760  GLIPYPHHNQSPRNTYQCAMGKQAIGVIANNQFLRIDSLLYTMVYPQKPMVKTRTIELIK 819

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQ+AT+AVMSYSGYDIEDAL++NK S+DRGFGRC V+R     LK Y N T D+
Sbjct: 820  YDKLPAGQSATVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYSTNLKSYSNGTKDK 879

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATP---- 1088
            + GP  + +   P+ +H  LD DG+ A GE++   +V +NK  P  ++S+    +     
Sbjct: 880  LKGP--DRENGVPIRKHALLDNDGLAAVGEKVNYGEVYINKVTPENALSSGITGSDAGRP 937

Query: 1089 -EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
              Y   P +YK   PSY++KV++S+   +  LIK+  RQTR PE+GDKFSSRHGQKGV+G
Sbjct: 938  IAYIPSPQTYKLPDPSYIDKVMISATEAENQLIKVQTRQTRVPEVGDKFSSRHGQKGVVG 997

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            +I E  DMPF++ GI PDIIMNPHG 
Sbjct: 998  IIAEHADMPFSDLGIVPDIIMNPHGF 1023



 Score =  257 bits (657), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 119/203 (58%), Positives = 155/203 (76%), Gaps = 2/203 (0%)

Query: 1172 GLKGCD--RITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFS 1229
            G+ G D  R   Y   P +YK   PSY++KV++S+   +  LIK+  RQTR PE+GDKFS
Sbjct: 928  GITGSDAGRPIAYIPSPQTYKLPDPSYIDKVMISATEAENQLIKVQTRQTRVPEVGDKFS 987

Query: 1230 SRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNY 1289
            SRHGQKGV+G+I E  DMPF++ GI PDIIMNPHG+PSRMTVGK++EL+AGKAG++ G +
Sbjct: 988  SRHGQKGVVGIIAEHADMPFSDLGIVPDIIMNPHGFPSRMTVGKMLELIAGKAGILSGQF 1047

Query: 1290 KEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQD 1349
              GTAFGG+ + ++   L+ HG++Y GKD   SGITGE L AY++ GP+YYQKLKHMVQD
Sbjct: 1048 GYGTAFGGSPVEEMSAILVDHGFSYGGKDYLTSGITGEPLPAYVFMGPIYYQKLKHMVQD 1107

Query: 1350 KIHARSRGPRVVLTRQPTGRRWK 1372
            K+H+R+RGPR +LTRQPT  R +
Sbjct: 1108 KMHSRARGPRAILTRQPTEGRSR 1130



 Score =  206 bits (523), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 123/280 (43%), Positives = 168/280 (60%), Gaps = 21/280 (7%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPK-IKAAQFDI--V 189
           +D  DY  N  ++   Q  A ++ D   LF     DI + I DK++ K ++  QFD   V
Sbjct: 438 VDDRDYVGNKRLELAGQLLALLFED---LFKKFQFDIKMNI-DKVLKKPVRTEQFDAYGV 493

Query: 190 NHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
             +  + IT  +  AI TGNW+++RF+MER GVT VLSRLSYI+ LGM+TRI+SQFEKTR
Sbjct: 494 VAIHGNHITQGMNRAISTGNWSLKRFRMERAGVTHVLSRLSYIAALGMLTRISSQFEKTR 553

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHI 309
           KVSGPR+LQ SQ+GMLCPSDTPEGEACGLVKNLALMTHITT ++E+ + K+++ +G E +
Sbjct: 554 KVSGPRALQPSQFGMLCPSDTPEGEACGLVKNLALMTHITTNDEEEPVRKLIFALGAEDV 613

Query: 310 AMFNGEELSSPGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHECRLRDLTYS 369
               G EL   G Y++F+NG    +T   K         SF   R+T            S
Sbjct: 614 QTVGGRELHGQGAYIIFLNGSPIALTRRPKFFLN-----SFRRLRRTG---------RVS 659

Query: 370 APITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNK 409
             I+V I + + +  V   D  I R  I+++  K  + N+
Sbjct: 660 EFISVFINHHQNAVHVATDDGRICRPLIIVEDGKSKVTNR 699



 Score =  156 bits (395), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 77/137 (56%), Positives = 93/137 (67%), Gaps = 15/137 (10%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G   FDDFL  G +EYLD NE NDS+IAV E  I    TTHLEI PFT+LG  AG     
Sbjct: 707 GTMEFDDFLAHGLVEYLDCNEENDSYIAVYEEDITQS-TTHLEIEPFTILGAVAG----- 760

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQA+G I  NQ  RID+L+Y +VY Q+PMV+
Sbjct: 761 ---------LIPYPHHNQSPRNTYQCAMGKQAIGVIANNQFLRIDSLLYTMVYPQKPMVK 811

Query: 808 SKTIRITNFHKLPAGKC 824
           ++TI +  + KLPAG+ 
Sbjct: 812 TRTIELIKYDKLPAGQS 828



 Score = 97.4 bits (241), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 44/89 (49%), Positives = 66/89 (74%)

Query: 445 FQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDY 504
           F   ++  V +A + +SS  I+H+ V N+ F+ KA+Y+A M RR+++A  DP ++DDRDY
Sbjct: 384 FGITRRNHVQEAIEAISSVIISHVVVENLNFRPKALYVAHMARRVLMAKHDPSLVDDRDY 443

Query: 505 YGNKRLELAGSLLSLMFEDVFKRFNSELK 533
            GNKRLELAG LL+L+FED+FK+F  ++K
Sbjct: 444 VGNKRLELAGQLLALLFEDLFKKFQFDIK 472



 Score = 91.7 bits (226), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 41/67 (61%), Positives = 50/67 (74%)

Query: 345 EIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKC 404
           E +  F+     TP+ECRLRD+TY+API VD EY RG QRV R+   IGRMP+ML+SSKC
Sbjct: 168 EQDSKFDLASTITPNECRLRDMTYAAPILVDFEYVRGRQRVKRNGTAIGRMPVMLRSSKC 227

Query: 405 VLRNKTE 411
           VL NK+E
Sbjct: 228 VLSNKSE 234



 Score = 82.8 bits (203), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/60 (58%), Positives = 51/60 (85%)

Query: 113 RDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           +DKW L+ +FLK KGLVK HIDS++YF+ V++KK++QA+A I SDVDP FY+++ DI++G
Sbjct: 101 QDKWNLLPAFLKIKGLVKQHIDSYNYFVEVQLKKIVQASAEIRSDVDPNFYIRFHDIYLG 160


>gi|452986015|gb|EME85771.1| hypothetical protein MYCFIDRAFT_40745, partial [Pseudocercospora
            fijiensis CIRAD86]
          Length = 1132

 Score =  305 bits (781), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 144/262 (54%), Positives = 187/262 (71%), Gaps = 8/262 (3%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ  RIDTL+Y +VY Q+PMV ++TI +  
Sbjct: 676  GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFTRIDTLLYLMVYPQKPMVTTRTIELVK 735

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNA +AVMSYSGYDIEDAL++NKAS DRGFGRC +++     LK Y N   DR
Sbjct: 736  YDKLPAGQNAVVAVMSYSGYDIEDALVLNKASCDRGFGRCQIFKKISMPLKAYGNGYTDR 795

Query: 1033 ILGPLLEADTRKPV-YRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYK 1091
            +       D R P   RHR + +DG+V  G ++    + + K+ P     AI     ++ 
Sbjct: 796  L-------DDRDPSNTRHRKIGKDGLVEVGSELENGDMYMLKASPINQSQAIPQKDQKWS 848

Query: 1092 EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVE 1151
             + +SYK   PSY +KV++++N  +  ++K+  RQTRRPEIGDKFSSRHGQKGV+GL+ E
Sbjct: 849  PMHMSYKLPDPSYADKVMITANEANTTILKIQTRQTRRPEIGDKFSSRHGQKGVVGLLAE 908

Query: 1152 QEDMPFNESGICPDIIMNPHGL 1173
            Q DMPF++SG+ PDIIMNPHG 
Sbjct: 909  QADMPFSDSGVVPDIIMNPHGF 930



 Score =  260 bits (665), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 129/255 (50%), Positives = 177/255 (69%), Gaps = 23/255 (9%)

Query: 1127 TRRPEIGDKFSSRHGQKGVIGLI-----VEQEDM------PFNESGICPDIIMNPHGLKG 1175
            T R +  D  ++RH + G  GL+     +E  DM      P N+S   P           
Sbjct: 793  TDRLDDRDPSNTRHRKIGKDGLVEVGSELENGDMYMLKASPINQSQAIPQ---------- 842

Query: 1176 CDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1235
              +  ++  + +SYK   PSY +KV++++N  +  ++K+  RQTRRPEIGDKFSSRHGQK
Sbjct: 843  --KDQKWSPMHMSYKLPDPSYADKVMITANEANTTILKIQTRQTRRPEIGDKFSSRHGQK 900

Query: 1236 GVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAF 1295
            GV+GL+ EQ DMPF++SG+ PDIIMNPHG+PSRMTVGK++EL++GKAG++ G  + GT F
Sbjct: 901  GVVGLLAEQADMPFSDSGVVPDIIMNPHGFPSRMTVGKMLELVSGKAGVLTGKQEYGTPF 960

Query: 1296 GGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARS 1355
            GG+K+ D+   L++HG++Y GKD   SGITGE+L  Y++ GP+YYQKLKHMVQDK+H+RS
Sbjct: 961  GGSKVEDMGSILVKHGFSYSGKDHLTSGITGESLPFYVFFGPIYYQKLKHMVQDKMHSRS 1020

Query: 1356 RGPRVVLTRQPTGRR 1370
             GPR +LTRQPT  R
Sbjct: 1021 TGPRAILTRQPTEGR 1035



 Score =  202 bits (513), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 111/213 (52%), Positives = 142/213 (66%), Gaps = 11/213 (5%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDV--DPLFYLKYLDIHVGIADKIIPKIKAAQ-FDIV 189
           +D  DY  N  ++   Q  + ++ D+  D +  +K      G  DKI+ K    Q FD +
Sbjct: 354 VDDRDYVGNKRLELAGQMLSLLFEDLFKDCVRQIK------GNMDKILKKANPTQEFDPL 407

Query: 190 NHMRQ--DTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEK 247
             + Q    IT+ +  AI TGNWT++RF+M+R GVT VLSRLSYIS LGMMTRI SQFEK
Sbjct: 408 RLVEQIESRITSGMERAISTGNWTLKRFRMDRAGVTHVLSRLSYISALGMMTRITSQFEK 467

Query: 248 TRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIE 307
           TRKVSGPR+LQ SQ+GMLC SDTPEGEACGLVKNLALMTHITT +DE  + KI+Y +G E
Sbjct: 468 TRKVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTADDEAPVRKIIYILGAE 527

Query: 308 HIAMFNGEELSSPGVYLVFVNGILAGITCHHKE 340
            +   +G E+   G Y+VF+NG  A +T   K+
Sbjct: 528 DVTSVSGTEIYGNGAYIVFINGTPAALTRQPKQ 560



 Score =  159 bits (401), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 79/139 (56%), Positives = 94/139 (67%), Gaps = 15/139 (10%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G   FDD L  G +EYLDVNE NDS+IAV E  I    TTHLEI PFT+LG  AG     
Sbjct: 623 GAMDFDDALSRGLVEYLDVNEENDSNIAVYEKDINEH-TTHLEIEPFTILGAVAG----- 676

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ  RIDTL+Y +VY Q+PMV 
Sbjct: 677 ---------LIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFTRIDTLLYLMVYPQKPMVT 727

Query: 808 SKTIRITNFHKLPAGKCQI 826
           ++TI +  + KLPAG+  +
Sbjct: 728 TRTIELVKYDKLPAGQNAV 746



 Score = 96.7 bits (239), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 46/97 (47%), Positives = 69/97 (71%), Gaps = 2/97 (2%)

Query: 439 KLRQKRFQTYK--KTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDP 496
           +L+  RF + +  +TP   A + L+ T I H+ V  M F+ KA+Y+A M RR+++A++DP
Sbjct: 292 RLKPDRFASRRQERTPKQQALEKLAGTIIPHVEVEGMNFRPKALYVAFMTRRVLMAMNDP 351

Query: 497 DMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
            ++DDRDY GNKRLELAG +LSL+FED+FK    ++K
Sbjct: 352 KLVDDRDYVGNKRLELAGQMLSLLFEDLFKDCVRQIK 388



 Score = 74.3 bits (181), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 32/70 (45%), Positives = 51/70 (72%)

Query: 342 CKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQS 401
           C+ E   +     + TP+ECRLRD+TY+API +D  Y R +  V +++++IGR+P+ML+S
Sbjct: 85  CRIEDARAGYVQTEVTPNECRLRDMTYAAPIYLDFIYPRQAGNVRKTNVLIGRLPMMLRS 144

Query: 402 SKCVLRNKTE 411
           SKCVL+ ++E
Sbjct: 145 SKCVLKGRSE 154



 Score = 72.0 bits (175), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/59 (50%), Positives = 47/59 (79%), Gaps = 1/59 (1%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           DKW L+ +FL+ KGL+K H DSFDYF+++E+KK+++AN  I++D D   ++K++DI VG
Sbjct: 25  DKWNLLPAFLRVKGLIKQHTDSFDYFVDIELKKILKANEFIFTD-DKRKWIKFVDIRVG 82


>gi|224132576|ref|XP_002321356.1| predicted protein [Populus trichocarpa]
 gi|222868352|gb|EEF05483.1| predicted protein [Populus trichocarpa]
          Length = 1141

 Score =  305 bits (780), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 147/267 (55%), Positives = 188/267 (70%), Gaps = 12/267 (4%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG I YNQ +R+D+L+Y LVY QRP++ ++TI +  
Sbjct: 667  GLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQASRMDSLLYLLVYPQRPLLTTRTIELVG 726

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KL AGQNAT+AVMSYSGYDIEDA++MNKASLDRGFGRC+V +   C  ++Y N   DR
Sbjct: 727  YDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVLKKYTCTNQKYENGASDR 786

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTIS----VSAISMATP 1088
            IL P      RK   R R LD DG+ APGE I    + +NK  P  +     SA ++A  
Sbjct: 787  ILRP------RKNEERERVLDDDGLAAPGEIIRHGDIYINKESPIETRGPLKSAAALADV 840

Query: 1089 EYKEVPVSYKGS--VPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVI 1146
            +Y+     +KG+      +++V + S+  +   IK  +R TRRPE+GDKFSSRHGQKGV 
Sbjct: 841  KYRPCAQIFKGTEGESCVVDRVALCSDKNNNLCIKYKIRHTRRPEVGDKFSSRHGQKGVC 900

Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G I++QED PF+E GICPD+IMNPHG 
Sbjct: 901  GTIIQQEDFPFSERGICPDLIMNPHGF 927



 Score =  231 bits (590), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 108/187 (57%), Positives = 137/187 (73%), Gaps = 11/187 (5%)

Query: 1197 LEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICP 1256
            +++V + S+  +   IK  +R TRRPE+GDKFSSRHGQKGV G I++QED PF+E GICP
Sbjct: 859  VDRVALCSDKNNNLCIKYKIRHTRRPEVGDKFSSRHGQKGVCGTIIQQEDFPFSERGICP 918

Query: 1257 DIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTK-----------LVDVQE 1305
            D+IMNPHG+PSRMTVGK+IELL GKAG+  G +  G+AFG               + + E
Sbjct: 919  DLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADRVEAIRHFLSLIE 978

Query: 1306 ELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQ 1365
             L++HG++Y GKD  YSGITG  L+AYI+ GP+YYQKLKHMV DK+HAR  GPRV+LTRQ
Sbjct: 979  TLVKHGFSYNGKDFIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQ 1038

Query: 1366 PTGRRWK 1372
            PT  R +
Sbjct: 1039 PTDGRAR 1045



 Score =  204 bits (520), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 99/216 (45%), Positives = 146/216 (67%), Gaps = 3/216 (1%)

Query: 118 LVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKI 177
           ++L  + E  L K  +D  DY  N  ++   Q  + ++ D   LF     ++       +
Sbjct: 332 VMLRRMMEALLNKDAMDDKDYVGNKRLELSGQLISLLFED---LFKTMITEVQKTADTLL 388

Query: 178 IPKIKAAQFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGM 237
           + + ++++FD   ++ +D+ITN L  A+ TGNW ++RF+M R+GVTQVL RLSY++ LG 
Sbjct: 389 VKQNRSSRFDFSQYIVRDSITNGLERALSTGNWDVKRFRMNRKGVTQVLVRLSYMASLGH 448

Query: 238 MTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNM 297
           MTRI+ QFEK+RKVSGPR+LQ SQWGMLCP DTPEGEACGLVKNLALMTH+TT+ +E  +
Sbjct: 449 MTRISPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEESPL 508

Query: 298 LKIMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAG 333
           + +   +G+E + + +GEEL +P  +LV  NG++ G
Sbjct: 509 ISLCKCLGVEDLELLSGEELHTPNSFLVIFNGLILG 544



 Score =  157 bits (396), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 77/136 (56%), Positives = 97/136 (71%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G + FDDFL+EG IEYLDVNE N++ IA+ E    P  TTH+EI PFT+LGV AG     
Sbjct: 614 GARTFDDFLHEGLIEYLDVNEENNALIALYEWEATPE-TTHIEIEPFTILGVVAG----- 667

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQAMG I YNQ +R+D+L+Y LVY QRP++ 
Sbjct: 668 ---------LIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQASRMDSLLYLLVYPQRPLLT 718

Query: 808 SKTIRITNFHKLPAGK 823
           ++TI +  + KL AG+
Sbjct: 719 TRTIELVGYDKLGAGQ 734



 Score = 84.7 bits (208), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 40/80 (50%), Positives = 58/80 (72%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A   L    IA++PV    F+ K +Y+AVM+RRM+ AL + D +DD+DY GNKRLEL+G 
Sbjct: 304 ALAILRDVFIANVPVRKNNFRPKCIYVAVMLRRMMEALLNKDAMDDKDYVGNKRLELSGQ 363

Query: 516 LLSLMFEDVFKRFNSELKET 535
           L+SL+FED+FK   +E+++T
Sbjct: 364 LISLLFEDLFKTMITEVQKT 383



 Score = 78.6 bits (192), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/115 (41%), Positives = 67/115 (58%), Gaps = 17/115 (14%)

Query: 303 NIGIEHIAMFNGEELSS--PGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHE 360
           NIGI+ I   N   +S+  P +YL F +           ++ KP +      + Q TPH 
Sbjct: 46  NIGIKKIVRANDRIVSTVDPSLYLRFTD----------VKIGKPSMVVD-AISEQITPHM 94

Query: 361 CRLRDLTYSAPITVDIEYTRGS----QRVVRSDLVIGRMPIMLQSSKCVLRNKTE 411
           CRL D TY+API V+IEY  GS    ++++++D+VIGRMPIML+S  CVL  K E
Sbjct: 95  CRLSDTTYAAPILVNIEYISGSHGRKEKMIKNDVVIGRMPIMLRSCCCVLYGKNE 149



 Score = 75.5 bits (184), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/68 (48%), Positives = 49/68 (72%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGI 173
           DK++L+  FLK +GLVK H+DSF+YFIN+ IKK+++AN  I S VDP  YL++ D+ +G 
Sbjct: 19  DKFQLLPEFLKGRGLVKQHLDSFNYFINIGIKKIVRANDRIVSTVDPSLYLRFTDVKIGK 78

Query: 174 ADKIIPKI 181
              ++  I
Sbjct: 79  PSMVVDAI 86


>gi|108708689|gb|ABF96484.1| DNA-directed RNA polymerase III 130 kDa polypeptide, putative,
            expressed [Oryza sativa Japonica Group]
          Length = 1039

 Score =  305 bits (780), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 146/265 (55%), Positives = 187/265 (70%), Gaps = 4/265 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG I YNQ  R D+L+Y LVYAQRP++ +KTI +  
Sbjct: 683  GLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLFRADSLLYLLVYAQRPLLTTKTIELVG 742

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KL AGQNAT+AVMSYSGYDIEDA++MNK+SLDRGFGRC+  +      ++Y     DR
Sbjct: 743  YDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIAMKKYTVTKEKYEGGYSDR 802

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMP--TISVSAISMATPEY 1090
            I+ P  + D        RALD+DG  APG  I    + VNK  P  T   S   +   +Y
Sbjct: 803  IVKPQRDKDGALLKQNMRALDEDGFAAPGLIIRNHDIYVNKQTPRNTKRDSGAHLTDRDY 862

Query: 1091 KEVPVSYKG--SVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
            K+ P  YKG     + +++V++ S++++  +IK ++R TRRPE+GDKFSSRHGQKGV G 
Sbjct: 863  KDSPAVYKGVDGETTVVDRVMLCSDTDEKLIIKCIIRHTRRPEVGDKFSSRHGQKGVCGT 922

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            IV+QED PF+E GICPD+IMNPHG 
Sbjct: 923  IVQQEDFPFSERGICPDLIMNPHGF 947



 Score =  219 bits (558), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 116/269 (43%), Positives = 166/269 (61%), Gaps = 25/269 (9%)

Query: 1085 MATPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKG 1144
            +A  +Y      Y+G    Y ++++     +D      LL+Q  R    D F++      
Sbjct: 783  IAMKKYTVTKEKYEGG---YSDRIVKPQRDKDG----ALLKQNMRALDEDGFAAP----- 830

Query: 1145 VIGLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKG--SVPSYLEKVLV 1202
              GLI+   D+  N+    P       G    DR  +YK+ P  YKG     + +++V++
Sbjct: 831  --GLIIRNHDIYVNKQ--TPRNTKRDSGAHLTDR--DYKDSPAVYKGVDGETTVVDRVML 884

Query: 1203 SSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNP 1262
             S++++  +IK ++R TRRPE+GDKFSSRHGQKGV G IV+QED PF+E GICPD+IMNP
Sbjct: 885  CSDTDEKLIIKCIIRHTRRPEVGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNP 944

Query: 1263 HGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFG-----GTKLVDVQEELIRHGYNYQGK 1317
            HG+PSRMT+GK+IELL GKAG+  G +  G+AFG       K+ D+   L++HG++Y GK
Sbjct: 945  HGFPSRMTIGKMIELLGGKAGVSCGQFHYGSAFGEPSGNADKVEDISRTLVKHGFSYNGK 1004

Query: 1318 DIFYSGITGEALEAYIYSGPVYYQKLKHM 1346
            D+ YSGI G   +AY++ GP+YYQKLKHM
Sbjct: 1005 DLLYSGILGHPCQAYVFMGPIYYQKLKHM 1033



 Score =  202 bits (514), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 99/215 (46%), Positives = 144/215 (66%), Gaps = 20/215 (9%)

Query: 139 FINVEIKKLMQA--NANIYSDVD-----------PLFYLKYLDIH-------VGIADKII 178
           +  V ++++M A  NA+ + D D            L  L + D+        V + +K  
Sbjct: 341 YTAVMLRRMMDAILNADTFDDKDYVGNKRLELSGQLISLLFEDLFKTMNSNAVELMNKTS 400

Query: 179 PKIKAAQFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMM 238
            KI ++  D+  H++++ IT+ L  AI TGNW I+RF+M R+GV+QVLSRLSY++ LG M
Sbjct: 401 EKIHSSPLDLSLHIKENIITHGLERAISTGNWDIKRFRMHRKGVSQVLSRLSYMASLGYM 460

Query: 239 TRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNML 298
           TRI  QFEKTRK SGPR+LQ SQWGMLCP DTPEGEACGL KNLAL+TH+TT+ +E  ++
Sbjct: 461 TRITPQFEKTRKTSGPRALQPSQWGMLCPCDTPEGEACGLTKNLALLTHVTTDQEEGPLM 520

Query: 299 KIMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAG 333
            + Y++G+E +++ +GEE+ + G +LV  NG++ G
Sbjct: 521 NLCYSLGVEDLSLLSGEEIHASGSFLVMFNGLILG 555



 Score =  149 bits (377), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 79/153 (51%), Positives = 99/153 (64%), Gaps = 19/153 (12%)

Query: 676 PRPTFLNMHQFL-GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSE----SGIRPGVTTHLE 730
           PR    +M Q   G + FDDFL +G IEYLDVNE N++ IA+ E      ++    TH+E
Sbjct: 612 PRVKEHHMKQLRDGIRSFDDFLRDGLIEYLDVNEENNALIALYEHEDQDDVQRSSITHIE 671

Query: 731 IAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNR 790
           I P T+LGV AG              L+PYPHHNQ+PRNTYQCAMGKQAMG I YNQ  R
Sbjct: 672 IEPLTILGVVAG--------------LIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLFR 717

Query: 791 IDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
            D+L+Y LVYAQRP++ +KTI +  + KL AG+
Sbjct: 718 ADSLLYLLVYAQRPLLTTKTIELVGYDKLGAGQ 750



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/79 (49%), Positives = 55/79 (69%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           ++  L    +AH+PV +  F+ K +Y AVM+RRM+ A+ + D  DD+DY GNKRLEL+G 
Sbjct: 316 SKSILRDVFVAHVPVESGNFRPKCIYTAVMLRRMMDAILNADTFDDKDYVGNKRLELSGQ 375

Query: 516 LLSLMFEDVFKRFNSELKE 534
           L+SL+FED+FK  NS   E
Sbjct: 376 LISLLFEDLFKTMNSNAVE 394



 Score = 66.6 bits (161), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 41/111 (36%), Positives = 60/111 (54%), Gaps = 15/111 (13%)

Query: 305 GIEHIAMFNG--EELSSPGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHECR 362
           GI +I   N   E  ++P ++L + N +  G+         P ++  +    + TPH CR
Sbjct: 65  GIRNIVKANNRIEARNNPSIFLRY-NSVRVGV---------PSVQVQY-IAEKITPHFCR 113

Query: 363 LRDLTYSAPITVDIEYTRGSQRVVRS--DLVIGRMPIMLQSSKCVLRNKTE 411
           L D TYSAP+  DIEYT G Q  ++   + +IG +PIML+S  CVL  K E
Sbjct: 114 LTDRTYSAPVLADIEYTVGKQYELKRKPNFIIGYLPIMLRSHACVLNGKDE 164



 Score = 61.6 bits (148), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 8/74 (10%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG- 172
           DK+ L+ +FLK +GLVK HIDSF+YFI   I+ +++AN  I +  +P  +L+Y  + VG 
Sbjct: 36  DKFALLPAFLKVRGLVKEHIDSFNYFITKGIRNIVKANNRIEARNNPSIFLRYNSVRVGV 95

Query: 173 -------IADKIIP 179
                  IA+KI P
Sbjct: 96  PSVQVQYIAEKITP 109


>gi|159471568|ref|XP_001693928.1| DNA-directed RNA polymerase III, subunit 2 [Chlamydomonas
            reinhardtii]
 gi|158277095|gb|EDP02864.1| DNA-directed RNA polymerase III, subunit 2 [Chlamydomonas
            reinhardtii]
          Length = 1161

 Score =  305 bits (780), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 147/270 (54%), Positives = 193/270 (71%), Gaps = 10/270 (3%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+P+PHHNQ+PRNTYQCAMGKQAMG I YNQ +R+D+L+Y LVY QRP++ S+TI +  
Sbjct: 685  GLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNQMSRMDSLLYLLVYPQRPLLTSRTIELVG 744

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KL AGQNA++AVMSYSGYDIEDA++MNK SLDRGFGRC+V +     L++Y N+  DR
Sbjct: 745  FDKLGAGQNASVAVMSYSGYDIEDAIVMNKYSLDRGFGRCIVLKKYGASLRKYANRASDR 804

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTIS---VSAISMATPE 1089
            I+ PL     +    R R LD+DGI   G+ I    V +N   P+ +   + A +M    
Sbjct: 805  IVAPLPLPGQKAVAPRFRLLDRDGIACVGDYILPGDVYINMQRPSNTRDPLPAANMPDAF 864

Query: 1090 YKEVPVSYKGSVPSY------LEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1143
            Y+  P+S+K S P+       ++KV +++N E  + IK+L+R TRRPE+GDKFSSRHGQK
Sbjct: 865  YRPSPMSWK-STPAMAGERCIVDKVQITANDESHYSIKVLIRHTRRPELGDKFSSRHGQK 923

Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            GV+G IV QED PF+E G+CPD+IMNPHG 
Sbjct: 924  GVVGNIVRQEDFPFSERGVCPDLIMNPHGF 953



 Score =  251 bits (642), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 122/202 (60%), Positives = 152/202 (75%), Gaps = 12/202 (5%)

Query: 1182 YKEVPVSYKGSVPSY------LEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1235
            Y+  P+S+K S P+       ++KV +++N E  + IK+L+R TRRPE+GDKFSSRHGQK
Sbjct: 865  YRPSPMSWK-STPAMAGERCIVDKVQITANDESHYSIKVLIRHTRRPELGDKFSSRHGQK 923

Query: 1236 GVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAF 1295
            GV+G IV QED PF+E G+CPD+IMNPHG+PSRMTVGK+IELL  KA +  G +  GTAF
Sbjct: 924  GVVGNIVRQEDFPFSERGVCPDLIMNPHGFPSRMTVGKMIELLGSKAAVSCGRFHYGTAF 983

Query: 1296 G-----GTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDK 1350
            G       K+ D+   L+RHG++Y GKD   SGITGE LEAYI+ GPVYYQKLKHMV DK
Sbjct: 984  GEPSNLADKVEDISATLVRHGFSYSGKDFLTSGITGEPLEAYIFMGPVYYQKLKHMVLDK 1043

Query: 1351 IHARSRGPRVVLTRQPTGRRWK 1372
            +HAR+RGPRVVLTRQPT  R +
Sbjct: 1044 MHARARGPRVVLTRQPTEGRSR 1065



 Score =  209 bits (531), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 107/203 (52%), Positives = 140/203 (68%), Gaps = 5/203 (2%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKI-KAAQFDIVNH 191
           ID  DY+ N   K+L  A   +    + LF     DI    AD ++ K  +A QFD+   
Sbjct: 364 IDDRDYYGN---KRLELAGGLLSLLFEDLFKRLNSDIKRQ-ADAVLSKANRATQFDVAKA 419

Query: 192 MRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKV 251
           +R DTIT  L +A+ +GNW IRRF+MER+GVTQVLSRLS+I+ +GMMTR+ SQFEKTRKV
Sbjct: 420 IRTDTITYGLESALSSGNWIIRRFRMERKGVTQVLSRLSFIAAMGMMTRMTSQFEKTRKV 479

Query: 252 SGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAM 311
           SGPR+L  SQWGMLCP+DTPEGE+CGLVKNLALMTH+TT+ +E  +++++  +G E I  
Sbjct: 480 SGPRALHPSQWGMLCPADTPEGESCGLVKNLALMTHVTTDEEEGPLIRLLVMLGTEPITA 539

Query: 312 FNGEELSSPGVYLVFVNGILAGI 334
               E+   G  LVF+NG L G+
Sbjct: 540 IAPAEMHGHGGALVFLNGTLVGV 562



 Score =  145 bits (366), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 73/132 (55%), Positives = 91/132 (68%), Gaps = 15/132 (11%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKR 751
           F DFL  G +EYLDVNE N S IA+ E      +TTHLEI PFT++GV +G         
Sbjct: 636 FPDFLARGLLEYLDVNEENVSLIALYEKDCNK-LTTHLEIEPFTIMGVVSG--------- 685

Query: 752 FHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTI 811
                L+P+PHHNQ+PRNTYQCAMGKQAMG I YNQ +R+D+L+Y LVY QRP++ S+TI
Sbjct: 686 -----LIPFPHHNQSPRNTYQCAMGKQAMGNIAYNQMSRMDSLLYLLVYPQRPLLTSRTI 740

Query: 812 RITNFHKLPAGK 823
            +  F KL AG+
Sbjct: 741 ELVGFDKLGAGQ 752



 Score =  113 bits (282), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 51/88 (57%), Positives = 67/88 (76%)

Query: 446 QTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYY 505
           Q  +K+ VD+ARD L+   + H+PV   +F  K  Y+AVM+RRM+ A+ DP  +DDRDYY
Sbjct: 311 QKRRKSKVDEARDVLAHVVLCHVPVPRYQFAQKIAYVAVMVRRMLYAVLDPACIDDRDYY 370

Query: 506 GNKRLELAGSLLSLMFEDVFKRFNSELK 533
           GNKRLELAG LLSL+FED+FKR NS++K
Sbjct: 371 GNKRLELAGGLLSLLFEDLFKRLNSDIK 398



 Score = 80.1 bits (196), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 45/100 (45%), Positives = 57/100 (57%), Gaps = 17/100 (17%)

Query: 318 SSPGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIE 377
           + P  YL + N  + G          P ++E       TTP +CRLRD TYSAPITVDIE
Sbjct: 74  TDPNFYLKYTNIYVGG----------PSVDEDMVQV-GTTPQQCRLRDATYSAPITVDIE 122

Query: 378 YTRGSQRVVR------SDLVIGRMPIMLQSSKCVLRNKTE 411
           YTRG + VV+        + IGRMP+ML+  +CVL NK E
Sbjct: 123 YTRGKEIVVKRGRGGVGAVSIGRMPLMLRCDRCVLYNKNE 162



 Score = 73.9 bits (180), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 31/61 (50%), Positives = 46/61 (75%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           + DK+ L+ +FLK +GLVK H+DSF+Y +N E++K++ AN  +  D DP FYLKY +I+V
Sbjct: 28  VNDKFALLPAFLKVRGLVKQHLDSFNYLLNSELRKIVAANEKVTCDTDPNFYLKYTNIYV 87

Query: 172 G 172
           G
Sbjct: 88  G 88


>gi|29788820|gb|AAP03366.1| putative RNA polymerase III [Oryza sativa Japonica Group]
          Length = 1174

 Score =  304 bits (779), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 146/265 (55%), Positives = 187/265 (70%), Gaps = 4/265 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG I YNQ  R D+L+Y LVYAQRP++ +KTI +  
Sbjct: 702  GLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLFRADSLLYLLVYAQRPLLTTKTIELVG 761

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KL AGQNAT+AVMSYSGYDIEDA++MNK+SLDRGFGRC+  +      ++Y     DR
Sbjct: 762  YDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIAMKKYTVTKEKYEGGYSDR 821

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMP--TISVSAISMATPEY 1090
            I+ P  + D        RALD+DG  APG  I    + VNK  P  T   S   +   +Y
Sbjct: 822  IVKPQRDKDGALLKQNMRALDEDGFAAPGLIIRNHDIYVNKQTPRNTKRDSGAHLTDRDY 881

Query: 1091 KEVPVSYKG--SVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
            K+ P  YKG     + +++V++ S++++  +IK ++R TRRPE+GDKFSSRHGQKGV G 
Sbjct: 882  KDSPAVYKGVDGETTVVDRVMLCSDTDEKLIIKCIIRHTRRPEVGDKFSSRHGQKGVCGT 941

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            IV+QED PF+E GICPD+IMNPHG 
Sbjct: 942  IVQQEDFPFSERGICPDLIMNPHGF 966



 Score =  254 bits (648), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 133/295 (45%), Positives = 187/295 (63%), Gaps = 25/295 (8%)

Query: 1085 MATPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKG 1144
            +A  +Y      Y+G    Y ++++     +D      LL+Q  R    D F++      
Sbjct: 802  IAMKKYTVTKEKYEGG---YSDRIVKPQRDKDG----ALLKQNMRALDEDGFAAP----- 849

Query: 1145 VIGLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKG--SVPSYLEKVLV 1202
              GLI+   D+  N+    P       G    DR  +YK+ P  YKG     + +++V++
Sbjct: 850  --GLIIRNHDIYVNKQ--TPRNTKRDSGAHLTDR--DYKDSPAVYKGVDGETTVVDRVML 903

Query: 1203 SSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNP 1262
             S++++  +IK ++R TRRPE+GDKFSSRHGQKGV G IV+QED PF+E GICPD+IMNP
Sbjct: 904  CSDTDEKLIIKCIIRHTRRPEVGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNP 963

Query: 1263 HGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFG-----GTKLVDVQEELIRHGYNYQGK 1317
            HG+PSRMT+GK+IELL GKAG+  G +  G+AFG       K+ D+   L++HG++Y GK
Sbjct: 964  HGFPSRMTIGKMIELLGGKAGVSCGQFHYGSAFGEPSGNADKVEDISRTLVKHGFSYNGK 1023

Query: 1318 DIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
            D+ YSGI G   +AY++ GP+YYQKLKHMV DK+HAR+ GPRV+LTRQPT  R +
Sbjct: 1024 DLLYSGILGHPCQAYVFMGPIYYQKLKHMVLDKMHARASGPRVLLTRQPTEGRSR 1078



 Score =  203 bits (516), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 99/215 (46%), Positives = 144/215 (66%), Gaps = 20/215 (9%)

Query: 139 FINVEIKKLMQA--NANIYSDVD-----------PLFYLKYLDIH-------VGIADKII 178
           +  V ++++M A  NA+ + D D            L  L + D+        V + +K  
Sbjct: 360 YTAVMLRRMMDAILNADTFDDKDYVGNKRLELSGQLISLLFEDLFKTMNSNAVELMNKTS 419

Query: 179 PKIKAAQFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMM 238
            KI ++  D+  H++++ IT+ L  AI TGNW I+RF+M R+GV+QVLSRLSY++ LG M
Sbjct: 420 EKIHSSPLDLSLHIKENIITHGLERAISTGNWDIKRFRMHRKGVSQVLSRLSYMASLGYM 479

Query: 239 TRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNML 298
           TRI  QFEKTRK SGPR+LQ SQWGMLCP DTPEGEACGL KNLAL+TH+TT+ +E  ++
Sbjct: 480 TRITPQFEKTRKTSGPRALQPSQWGMLCPCDTPEGEACGLTKNLALLTHVTTDQEEGPLM 539

Query: 299 KIMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAG 333
            + Y++G+E +++ +GEE+ + G +LV  NG++ G
Sbjct: 540 NLCYSLGVEDLSLLSGEEIHASGSFLVMFNGLILG 574



 Score =  149 bits (377), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 79/153 (51%), Positives = 99/153 (64%), Gaps = 19/153 (12%)

Query: 676 PRPTFLNMHQFL-GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSE----SGIRPGVTTHLE 730
           PR    +M Q   G + FDDFL +G IEYLDVNE N++ IA+ E      ++    TH+E
Sbjct: 631 PRVKEHHMKQLRDGIRSFDDFLRDGLIEYLDVNEENNALIALYEHEDQDDVQRSSITHIE 690

Query: 731 IAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNR 790
           I P T+LGV AG              L+PYPHHNQ+PRNTYQCAMGKQAMG I YNQ  R
Sbjct: 691 IEPLTILGVVAG--------------LIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLFR 736

Query: 791 IDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
            D+L+Y LVYAQRP++ +KTI +  + KL AG+
Sbjct: 737 ADSLLYLLVYAQRPLLTTKTIELVGYDKLGAGQ 769



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/79 (49%), Positives = 55/79 (69%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           ++  L    +AH+PV +  F+ K +Y AVM+RRM+ A+ + D  DD+DY GNKRLEL+G 
Sbjct: 335 SKSILRDVFVAHVPVESGNFRPKCIYTAVMLRRMMDAILNADTFDDKDYVGNKRLELSGQ 394

Query: 516 LLSLMFEDVFKRFNSELKE 534
           L+SL+FED+FK  NS   E
Sbjct: 395 LISLLFEDLFKTMNSNAVE 413



 Score = 66.6 bits (161), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 41/111 (36%), Positives = 60/111 (54%), Gaps = 15/111 (13%)

Query: 305 GIEHIAMFNG--EELSSPGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHECR 362
           GI +I   N   E  ++P ++L + N +  G+         P ++  +    + TPH CR
Sbjct: 84  GIRNIVKANNRIEARNNPSIFLRY-NSVRVGV---------PSVQVQY-IAEKITPHFCR 132

Query: 363 LRDLTYSAPITVDIEYTRGSQRVVRS--DLVIGRMPIMLQSSKCVLRNKTE 411
           L D TYSAP+  DIEYT G Q  ++   + +IG +PIML+S  CVL  K E
Sbjct: 133 LTDRTYSAPVLADIEYTVGKQYELKRKPNFIIGYLPIMLRSHACVLNGKDE 183



 Score = 61.6 bits (148), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 8/74 (10%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG- 172
           DK+ L+ +FLK +GLVK HIDSF+YFI   I+ +++AN  I +  +P  +L+Y  + VG 
Sbjct: 55  DKFALLPAFLKVRGLVKEHIDSFNYFITKGIRNIVKANNRIEARNNPSIFLRYNSVRVGV 114

Query: 173 -------IADKIIP 179
                  IA+KI P
Sbjct: 115 PSVQVQYIAEKITP 128


>gi|115453445|ref|NP_001050323.1| Os03g0403100 [Oryza sativa Japonica Group]
 gi|108708688|gb|ABF96483.1| DNA-directed RNA polymerase III 130 kDa polypeptide, putative,
            expressed [Oryza sativa Japonica Group]
 gi|113548794|dbj|BAF12237.1| Os03g0403100 [Oryza sativa Japonica Group]
          Length = 1155

 Score =  304 bits (779), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 146/265 (55%), Positives = 187/265 (70%), Gaps = 4/265 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG I YNQ  R D+L+Y LVYAQRP++ +KTI +  
Sbjct: 683  GLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLFRADSLLYLLVYAQRPLLTTKTIELVG 742

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KL AGQNAT+AVMSYSGYDIEDA++MNK+SLDRGFGRC+  +      ++Y     DR
Sbjct: 743  YDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIAMKKYTVTKEKYEGGYSDR 802

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMP--TISVSAISMATPEY 1090
            I+ P  + D        RALD+DG  APG  I    + VNK  P  T   S   +   +Y
Sbjct: 803  IVKPQRDKDGALLKQNMRALDEDGFAAPGLIIRNHDIYVNKQTPRNTKRDSGAHLTDRDY 862

Query: 1091 KEVPVSYKG--SVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
            K+ P  YKG     + +++V++ S++++  +IK ++R TRRPE+GDKFSSRHGQKGV G 
Sbjct: 863  KDSPAVYKGVDGETTVVDRVMLCSDTDEKLIIKCIIRHTRRPEVGDKFSSRHGQKGVCGT 922

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            IV+QED PF+E GICPD+IMNPHG 
Sbjct: 923  IVQQEDFPFSERGICPDLIMNPHGF 947



 Score =  253 bits (647), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 133/295 (45%), Positives = 187/295 (63%), Gaps = 25/295 (8%)

Query: 1085 MATPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKG 1144
            +A  +Y      Y+G    Y ++++     +D      LL+Q  R    D F++      
Sbjct: 783  IAMKKYTVTKEKYEGG---YSDRIVKPQRDKDG----ALLKQNMRALDEDGFAAP----- 830

Query: 1145 VIGLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKG--SVPSYLEKVLV 1202
              GLI+   D+  N+    P       G    DR  +YK+ P  YKG     + +++V++
Sbjct: 831  --GLIIRNHDIYVNKQ--TPRNTKRDSGAHLTDR--DYKDSPAVYKGVDGETTVVDRVML 884

Query: 1203 SSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNP 1262
             S++++  +IK ++R TRRPE+GDKFSSRHGQKGV G IV+QED PF+E GICPD+IMNP
Sbjct: 885  CSDTDEKLIIKCIIRHTRRPEVGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNP 944

Query: 1263 HGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFG-----GTKLVDVQEELIRHGYNYQGK 1317
            HG+PSRMT+GK+IELL GKAG+  G +  G+AFG       K+ D+   L++HG++Y GK
Sbjct: 945  HGFPSRMTIGKMIELLGGKAGVSCGQFHYGSAFGEPSGNADKVEDISRTLVKHGFSYNGK 1004

Query: 1318 DIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
            D+ YSGI G   +AY++ GP+YYQKLKHMV DK+HAR+ GPRV+LTRQPT  R +
Sbjct: 1005 DLLYSGILGHPCQAYVFMGPIYYQKLKHMVLDKMHARASGPRVLLTRQPTEGRSR 1059



 Score =  202 bits (515), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 99/215 (46%), Positives = 144/215 (66%), Gaps = 20/215 (9%)

Query: 139 FINVEIKKLMQA--NANIYSDVD-----------PLFYLKYLDIH-------VGIADKII 178
           +  V ++++M A  NA+ + D D            L  L + D+        V + +K  
Sbjct: 341 YTAVMLRRMMDAILNADTFDDKDYVGNKRLELSGQLISLLFEDLFKTMNSNAVELMNKTS 400

Query: 179 PKIKAAQFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMM 238
            KI ++  D+  H++++ IT+ L  AI TGNW I+RF+M R+GV+QVLSRLSY++ LG M
Sbjct: 401 EKIHSSPLDLSLHIKENIITHGLERAISTGNWDIKRFRMHRKGVSQVLSRLSYMASLGYM 460

Query: 239 TRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNML 298
           TRI  QFEKTRK SGPR+LQ SQWGMLCP DTPEGEACGL KNLAL+TH+TT+ +E  ++
Sbjct: 461 TRITPQFEKTRKTSGPRALQPSQWGMLCPCDTPEGEACGLTKNLALLTHVTTDQEEGPLM 520

Query: 299 KIMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAG 333
            + Y++G+E +++ +GEE+ + G +LV  NG++ G
Sbjct: 521 NLCYSLGVEDLSLLSGEEIHASGSFLVMFNGLILG 555



 Score =  149 bits (377), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 79/153 (51%), Positives = 99/153 (64%), Gaps = 19/153 (12%)

Query: 676 PRPTFLNMHQFL-GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSE----SGIRPGVTTHLE 730
           PR    +M Q   G + FDDFL +G IEYLDVNE N++ IA+ E      ++    TH+E
Sbjct: 612 PRVKEHHMKQLRDGIRSFDDFLRDGLIEYLDVNEENNALIALYEHEDQDDVQRSSITHIE 671

Query: 731 IAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNR 790
           I P T+LGV AG              L+PYPHHNQ+PRNTYQCAMGKQAMG I YNQ  R
Sbjct: 672 IEPLTILGVVAG--------------LIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLFR 717

Query: 791 IDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
            D+L+Y LVYAQRP++ +KTI +  + KL AG+
Sbjct: 718 ADSLLYLLVYAQRPLLTTKTIELVGYDKLGAGQ 750



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/79 (49%), Positives = 55/79 (69%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           ++  L    +AH+PV +  F+ K +Y AVM+RRM+ A+ + D  DD+DY GNKRLEL+G 
Sbjct: 316 SKSILRDVFVAHVPVESGNFRPKCIYTAVMLRRMMDAILNADTFDDKDYVGNKRLELSGQ 375

Query: 516 LLSLMFEDVFKRFNSELKE 534
           L+SL+FED+FK  NS   E
Sbjct: 376 LISLLFEDLFKTMNSNAVE 394



 Score = 66.6 bits (161), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 41/111 (36%), Positives = 60/111 (54%), Gaps = 15/111 (13%)

Query: 305 GIEHIAMFNG--EELSSPGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHECR 362
           GI +I   N   E  ++P ++L + N +  G+         P ++  +    + TPH CR
Sbjct: 65  GIRNIVKANNRIEARNNPSIFLRY-NSVRVGV---------PSVQVQY-IAEKITPHFCR 113

Query: 363 LRDLTYSAPITVDIEYTRGSQRVVRS--DLVIGRMPIMLQSSKCVLRNKTE 411
           L D TYSAP+  DIEYT G Q  ++   + +IG +PIML+S  CVL  K E
Sbjct: 114 LTDRTYSAPVLADIEYTVGKQYELKRKPNFIIGYLPIMLRSHACVLNGKDE 164



 Score = 61.6 bits (148), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 8/74 (10%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG- 172
           DK+ L+ +FLK +GLVK HIDSF+YFI   I+ +++AN  I +  +P  +L+Y  + VG 
Sbjct: 36  DKFALLPAFLKVRGLVKEHIDSFNYFITKGIRNIVKANNRIEARNNPSIFLRYNSVRVGV 95

Query: 173 -------IADKIIP 179
                  IA+KI P
Sbjct: 96  PSVQVQYIAEKITP 109


>gi|242092386|ref|XP_002436683.1| hypothetical protein SORBIDRAFT_10g006995 [Sorghum bicolor]
 gi|241914906|gb|EER88050.1| hypothetical protein SORBIDRAFT_10g006995 [Sorghum bicolor]
          Length = 1137

 Score =  304 bits (778), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 146/265 (55%), Positives = 185/265 (69%), Gaps = 4/265 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG I YNQ  R D+L+Y LVYAQRP++ +KTI +  
Sbjct: 665  GLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLFRADSLLYLLVYAQRPLLTTKTIELVG 724

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KL AGQNAT+AVM YSGYDIEDA++MNK+SLDRGFGRC+  +    +   Y +   DR
Sbjct: 725  YDKLGAGQNATVAVMGYSGYDIEDAIVMNKSSLDRGFGRCIALKKYTVLKDNYVDGVSDR 784

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPE--Y 1090
            I+ P  + D        RALD DGIVAPG+ I    + VNK  P  +   I     +  Y
Sbjct: 785  IVKPQRDKDGVLMKQNMRALDDDGIVAPGQIIRNHDIYVNKQTPMNTSKGIGRPLTDSCY 844

Query: 1091 KEVPVSYKG--SVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
            K+ P  YKG     + +++V++ S++ D   IK ++R TRRPE+GDKFSSRHGQKGV G 
Sbjct: 845  KDSPAIYKGVDGETTVVDRVMLCSDTNDKLSIKCIIRHTRRPEVGDKFSSRHGQKGVCGT 904

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            I++QED PF+E GICPD+IMNPHG 
Sbjct: 905  IIQQEDFPFSERGICPDLIMNPHGF 929



 Score =  251 bits (640), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 127/253 (50%), Positives = 172/253 (67%), Gaps = 22/253 (8%)

Query: 1142 QKGVIGLIVEQEDMPFNESGI-CPDIIMNPHGL-----------KGCDR-ITE--YKEVP 1186
            Q+   G++++Q     ++ GI  P  I+  H +           KG  R +T+  YK+ P
Sbjct: 789  QRDKDGVLMKQNMRALDDDGIVAPGQIIRNHDIYVNKQTPMNTSKGIGRPLTDSCYKDSP 848

Query: 1187 VSYKG--SVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQ 1244
              YKG     + +++V++ S++ D   IK ++R TRRPE+GDKFSSRHGQKGV G I++Q
Sbjct: 849  AIYKGVDGETTVVDRVMLCSDTNDKLSIKCIIRHTRRPEVGDKFSSRHGQKGVCGTIIQQ 908

Query: 1245 EDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFG-----GTK 1299
            ED PF+E GICPD+IMNPHG+PSRMT+GK+IELL GKAG+  G +  G+AFG        
Sbjct: 909  EDFPFSERGICPDLIMNPHGFPSRMTIGKMIELLGGKAGVSCGRFHYGSAFGEPSGNADN 968

Query: 1300 LVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPR 1359
            + D+   LI+HG++Y GKD  YSGI G+ LEAYI+ GP+YYQKLKHMV DK+HAR+ GPR
Sbjct: 969  VADISSTLIKHGFSYNGKDFLYSGILGQPLEAYIFMGPIYYQKLKHMVLDKMHARASGPR 1028

Query: 1360 VVLTRQPTGRRWK 1372
            V+LTRQPT  R +
Sbjct: 1029 VLLTRQPTEGRSR 1041



 Score =  195 bits (496), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 99/227 (43%), Positives = 132/227 (58%), Gaps = 37/227 (16%)

Query: 180 KIKAAQFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMT 239
           K +++  D    + QDTIT  L  AI TGNW I+RF+M R+GV+QVLSRLSY++ LG MT
Sbjct: 384 KTRSSPLDFSQLIMQDTITFGLERAISTGNWDIKRFRMHRKGVSQVLSRLSYMATLGYMT 443

Query: 240 RINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLK 299
           RI  QFEKTRK SGPR+LQ SQWGMLCP DTPEGEACGL KNLAL++HITT+ +E  ++ 
Sbjct: 444 RITPQFEKTRKTSGPRALQPSQWGMLCPCDTPEGEACGLTKNLALLSHITTDQEEGPLID 503

Query: 300 IMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAG-------------------------- 333
           + +++G+E +   + EE+ +PG +LV +NG++ G                          
Sbjct: 504 LCHSLGVEDLLFLSSEEIHAPGSFLVMLNGLILGKHKDPQRLVIHLRNLRRSNVIGEFVS 563

Query: 334 -----------ITCHHKEVCKPEIEESFNYTRQTTPHECRLRDLTYS 369
                      I      VC+P I      +R    H  +LRD TY 
Sbjct: 564 IFINEKQRCVHIASDGGRVCRPLIIADMGISRIDETHMTKLRDGTYD 610



 Score =  142 bits (358), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 73/140 (52%), Positives = 91/140 (65%), Gaps = 18/140 (12%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSE----SGIRPGVTTHLEIAPFTLLGVCAGI 743
           G   FDDFL  G IEYLDVNE N++ IA+ E      +     TH+EI P ++LGV +G 
Sbjct: 607 GTYDFDDFLSGGLIEYLDVNEENNALIALYEHMDQDDVERSSITHIEIEPLSILGVVSG- 665

Query: 744 ELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQR 803
                        L+PYPHHNQ+PRNTYQCAMGKQAMG I YNQ  R D+L+Y LVYAQR
Sbjct: 666 -------------LIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLFRADSLLYLLVYAQR 712

Query: 804 PMVESKTIRITNFHKLPAGK 823
           P++ +KTI +  + KL AG+
Sbjct: 713 PLLTTKTIELVGYDKLGAGQ 732



 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/79 (48%), Positives = 53/79 (67%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           +   L    IAH+PV +   + K +Y AVM+RRM+ A+ + D  DD+DY GNKR EL+G 
Sbjct: 298 SNSILHDVFIAHVPVKDGNLRPKCIYTAVMLRRMLDAILNSDTFDDKDYVGNKRFELSGQ 357

Query: 516 LLSLMFEDVFKRFNSELKE 534
           L+SL+FED+FK  NS+  E
Sbjct: 358 LISLLFEDLFKTMNSQAVE 376



 Score = 75.5 bits (184), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/111 (43%), Positives = 60/111 (54%), Gaps = 15/111 (13%)

Query: 305 GIEHIAMFNG--EELSSPGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHECR 362
           GI+ I   N   E  + P +YL +++            V  P I E+ N     TPH CR
Sbjct: 47  GIKKIVEANNRIEARNDPSIYLRYLD----------VRVGMPSIYENCN-VESITPHLCR 95

Query: 363 LRDLTYSAPITVDIEYTRGSQRVV--RSDLVIGRMPIMLQSSKCVLRNKTE 411
           L D TYSAPI VDI+YT G Q VV  R+  +IG MPIML+SS C+L    E
Sbjct: 96  LTDRTYSAPIEVDIQYTVGKQHVVKRRNKFIIGYMPIMLRSSACILNEMDE 146



 Score = 71.6 bits (174), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/60 (55%), Positives = 46/60 (76%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGI 173
           DK+ L+ +FLK +GLVK HIDSF+YFI+  IKK+++AN  I +  DP  YL+YLD+ VG+
Sbjct: 18  DKFALLPAFLKVRGLVKEHIDSFNYFIDKGIKKIVEANNRIEARNDPSIYLRYLDVRVGM 77


>gi|167525657|ref|XP_001747163.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163774458|gb|EDQ88087.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1097

 Score =  304 bits (778), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 149/263 (56%), Positives = 187/263 (71%), Gaps = 17/263 (6%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYP+HNQ+PRNTYQCAMGKQAMG I  N Q RIDTL+Y+LVY  RP+V+++TI + +
Sbjct: 651  GLIPYPNHNQSPRNTYQCAMGKQAMGVIALNYQQRIDTLLYSLVYPMRPVVKTRTIELID 710

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQN  +AVMS+SGYDIEDA +MN+AS DRG+GRC+VY   +  LK+Y     D 
Sbjct: 711  FEKLPAGQNPIVAVMSFSGYDIEDATVMNRASFDRGYGRCVVYSKMQTSLKKYNGNLTDI 770

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKE 1092
            I          +P  R  A +  GIVA G+ +  R VLVNK  P    + I     +Y  
Sbjct: 771  I----------RPAPRDEAGNAKGIVAVGQPMYNRDVLVNKQTPIKRGTEI-----DYAS 815

Query: 1093 VPVSYKGSV--PSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
              V YKG+V   +Y ++V+VSSN+ED+ LIK+ +R TR PE+GDKFSSRHGQKGV GLIV
Sbjct: 816  TQVRYKGTVGKDAYCDQVMVSSNNEDSMLIKIRVRSTRIPELGDKFSSRHGQKGVCGLIV 875

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPFN++G+CPD IMNPHG 
Sbjct: 876  NQEDMPFNDAGVCPDKIMNPHGF 898



 Score =  269 bits (688), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 124/194 (63%), Positives = 154/194 (79%), Gaps = 2/194 (1%)

Query: 1181 EYKEVPVSYKGSV--PSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVI 1238
            +Y    V YKG+V   +Y ++V+VSSN+ED+ LIK+ +R TR PE+GDKFSSRHGQKGV 
Sbjct: 812  DYASTQVRYKGTVGKDAYCDQVMVSSNNEDSMLIKIRVRSTRIPELGDKFSSRHGQKGVC 871

Query: 1239 GLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGT 1298
            GLIV QEDMPFN++G+CPD IMNPHG+PSRMTVGKL+E    KAG++ GNY  GTAFGGT
Sbjct: 872  GLIVNQEDMPFNDAGVCPDKIMNPHGFPSRMTVGKLMEFCGAKAGVLNGNYNYGTAFGGT 931

Query: 1299 KLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGP 1358
             + ++   L++HGYNY GKD   SGITGE LE+YI+ GPV+YQKLKHMV DK+HARS+GP
Sbjct: 932  TIPEMCNTLLKHGYNYHGKDYLTSGITGEPLESYIFMGPVFYQKLKHMVMDKMHARSQGP 991

Query: 1359 RVVLTRQPTGRRWK 1372
              +LTRQPT  R +
Sbjct: 992  MTLLTRQPTEGRAR 1005



 Score =  230 bits (586), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 103/162 (63%), Positives = 130/162 (80%)

Query: 174 ADKIIPKIKAAQFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYIS 233
           AD  + K + A FD  N MR+D ITN+L  AI +GNW ++RFKMER GVT VLSRLS+I+
Sbjct: 369 ADVNLSKNRVAAFDATNFMREDIITNSLRNAISSGNWILKRFKMERHGVTSVLSRLSFIA 428

Query: 234 GLGMMTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTEND 293
            LGMMTRI SQFEKTRKVSGPRSLQ SQWGMLCP+DTPEGEACGLVKNLALMTH+T +++
Sbjct: 429 SLGMMTRITSQFEKTRKVSGPRSLQPSQWGMLCPADTPEGEACGLVKNLALMTHVTNDDE 488

Query: 294 EKNMLKIMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAGIT 335
           E+ ++K+ YN+G+E + + NGEE      +LVF+NG++ G+T
Sbjct: 489 EEPLVKLAYNLGVESLHLINGEEFGRSSTFLVFINGLMLGVT 530



 Score =  163 bits (412), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 79/140 (56%), Positives = 98/140 (70%), Gaps = 15/140 (10%)

Query: 687 LGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELL 746
           +G   FDDF+  G +EYLDVNE NDS +A+ E+ I    TTHLEI PFT+LG CAG    
Sbjct: 597 MGITTFDDFVINGLVEYLDVNEENDSLLALYENNIEAD-TTHLEIEPFTILGACAG---- 651

Query: 747 QYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMV 806
                     L+PYP+HNQ+PRNTYQCAMGKQAMG I  N Q RIDTL+Y+LVY  RP+V
Sbjct: 652 ----------LIPYPNHNQSPRNTYQCAMGKQAMGVIALNYQQRIDTLLYSLVYPMRPVV 701

Query: 807 ESKTIRITNFHKLPAGKCQI 826
           +++TI + +F KLPAG+  I
Sbjct: 702 KTRTIELIDFEKLPAGQNPI 721



 Score =  105 bits (263), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 53/101 (52%), Positives = 73/101 (72%), Gaps = 6/101 (5%)

Query: 443 KRFQTY--KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLD 500
           K  +TY   +T  D  RD LSS  +AH+P  N  F+ KA++L++M+RR+++++ D  M D
Sbjct: 275 KLLRTYGGARTKEDMGRDLLSSVVLAHVPCENFDFRAKAVFLSLMVRRVIISMGD-KMTD 333

Query: 501 DRDYYGNKRLELAGSLLSLMFEDVFKRFNSELK---ETNLS 538
           DRDY GNKRLELAGSL+SL+FED FK FN++LK   + NLS
Sbjct: 334 DRDYLGNKRLELAGSLMSLLFEDTFKNFNAQLKRQADVNLS 374



 Score = 82.0 bits (201), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/66 (54%), Positives = 51/66 (77%)

Query: 106 LKDSPEIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLK 165
           +K    + +KWKL+ +FLK KGLV+ HI+SF++FI V+IKK++ ANA + SD DP FY++
Sbjct: 1   MKPVATLEEKWKLLPAFLKMKGLVRQHIESFNHFIEVDIKKILAANAKVTSDNDPNFYVR 60

Query: 166 YLDIHV 171
           YLDI V
Sbjct: 61  YLDIRV 66



 Score = 67.8 bits (164), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 40/66 (60%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQ 400
           V  P I E F      TP +CRLR  TY+  I VD+EY RG + +   +  IGRMPIML+
Sbjct: 66  VLPPSINEGFKTNNTVTPMQCRLRSATYAGDIVVDLEYRRGHETLRVENTRIGRMPIMLR 125

Query: 401 SSKCVL 406
           S+ CVL
Sbjct: 126 SNLCVL 131


>gi|82914537|ref|XP_728803.1| DNA-directed RNA polymerase subunit beta [Plasmodium yoelii yoelii
            17XNL]
 gi|23485337|gb|EAA20368.1| DNA-directed RNA polymerase, beta subunit [Plasmodium yoelii yoelii]
          Length = 1312

 Score =  303 bits (776), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 182/497 (36%), Positives = 264/497 (53%), Gaps = 56/497 (11%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+  HNQ+PRNTYQ AM KQAMG    N   R+DTL + L Y Q+P+V +K     +F
Sbjct: 734  IIPFSDHNQSPRNTYQSAMSKQAMGIYVTNFNIRLDTLAHLLYYPQKPLVCTKATEYLHF 793

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
              LPAG NA +A+M Y+GY+ ED+LIMN++S+DRG  R + YR      KQ         
Sbjct: 794  KDLPAGINAIVAIMCYTGYNQEDSLIMNQSSIDRGLFRSVFYRTYTSEEKQQ-------- 845

Query: 1034 LGPLLEADTRKPVYR---------HRALDQDGIVAPGEQICERQVLVNKSMPTIS----- 1079
             G L+     KP  R         +  L+ DG++APG ++    +++ K  P+I      
Sbjct: 846  -GSLIIESFEKPSIRVVKGLKRGDYTKLEDDGLIAPGIRVLGDDIIIGKVSPSIDDEEDI 904

Query: 1080 -----VSAISMATPEYKEVPVSYKGSVPSYLEKVLVSSNSE---DAFLIKMLLRQTRRPE 1131
                 +   S++T   K +  +  GS         +SSNS    +      +L     P 
Sbjct: 905  IIQRKIPNTSLSTSNNKNIYDTTVGSDN-------ISSNSSVMGNPSYGSTMLDAGSEPN 957

Query: 1132 IGDKF---------------SSRHGQKGVIGLIVEQEDMPFNESG--ICPDIIMNPHGLK 1174
            + D++               +S  GQ     +   + D   + +G  I  D+ +    ++
Sbjct: 958  VNDRYTSGSSSVGSDTSSRINSVSGQSHTTLVTGAESDRYGSTTGATIREDVEVPTLTIR 1017

Query: 1175 GCDRITEYK-EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
              + + +YK +  +S + +    ++ V++SSNS      K+ +R  R P+IGDKF+SRHG
Sbjct: 1018 TTNAMKQYKKDCSLSIRSNENGVIDTVMLSSNSRGNKFAKVKVRSVRIPQIGDKFASRHG 1077

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGT 1293
            QKG IG+    EDMPF   G  PDIIMNPH  PSRMT+G L+E LAGK   +EG   + T
Sbjct: 1078 QKGTIGITYRMEDMPFTSDGTFPDIIMNPHAVPSRMTIGHLVECLAGKVAAIEGGEGDAT 1137

Query: 1294 AFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHA 1353
             F    + ++ E L R GY   G DI Y+G  G+ L + I+ GP +YQ+LKHMV+DKIHA
Sbjct: 1138 PFSKITVQEISERLHRLGYEKYGNDILYNGHNGKMLTSKIFIGPTFYQRLKHMVEDKIHA 1197

Query: 1354 RSRGPRVVLTRQPTGRR 1370
            RSRGP  ++TRQPT  R
Sbjct: 1198 RSRGPLTMITRQPTEGR 1214



 Score = 96.3 bits (238), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/136 (40%), Positives = 73/136 (53%), Gaps = 19/136 (13%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVT-----THLEIAPFTLLGVCAGIELL 746
           +D F+ EG IEY+D  E   + I++    ++ G       TH EI P  +LGVCA I   
Sbjct: 678 WDYFIQEGIIEYIDCEEEETTMISMFIDDLKTGTGYYNNYTHCEIHPSLILGVCASI--- 734

Query: 747 QYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMV 806
                      +P+  HNQ+PRNTYQ AM KQAMG    N   R+DTL + L Y Q+P+V
Sbjct: 735 -----------IPFSDHNQSPRNTYQSAMSKQAMGIYVTNFNIRLDTLAHLLYYPQKPLV 783

Query: 807 ESKTIRITNFHKLPAG 822
            +K     +F  LPAG
Sbjct: 784 CTKATEYLHFKDLPAG 799



 Score = 95.5 bits (236), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/126 (38%), Positives = 74/126 (58%), Gaps = 2/126 (1%)

Query: 186 FDIVNHMRQ-DTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           FD+   +R    IT  +   + TGNW   +  K+ R GV QVL+RL+Y S L  + R+N+
Sbjct: 451 FDVAGAIRSCSQITQGMQYQLATGNWGKDKDGKVIRTGVAQVLNRLTYSSCLSHLRRLNT 510

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP +TPEG++ GLVKNL+LM  I+      N+ + +  
Sbjct: 511 PLGREGKMAKPRQLHNTHWGMICPFETPEGQSVGLVKNLSLMCDISVGTSTNNIYEFLTE 570

Query: 304 IGIEHI 309
            G+E +
Sbjct: 571 WGLESL 576



 Score = 45.4 bits (106), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 6/81 (7%)

Query: 456 ARDFLSSTCIAHI---PVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLEL 512
           A++ L    + H+   P +  R   K+ ++  MI R++LA       DDRD++G KRL++
Sbjct: 361 AKELLRKEVLPHMGTGPGVESR---KSYFIGYMINRLLLAELGRIKEDDRDHFGKKRLDI 417

Query: 513 AGSLLSLMFEDVFKRFNSELK 533
           AG L++  F   F++   ++K
Sbjct: 418 AGPLMASSFATYFRKMAKDVK 438



 Score = 41.2 bits (95), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 11/88 (12%)

Query: 328 NGILAGITCHHKEVCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYT------RG 381
           N I+  +      + +P  +E     +   P E RLR+LTYS+ I +DIE +        
Sbjct: 93  NNIIYSLKFGQLSLDRPFFDEKNLINKNLWPQEARLRNLTYSSAIYIDIEQSTYIVDENT 152

Query: 382 SQRVVRSDLV-----IGRMPIMLQSSKC 404
            +++++   V     +GR+P+ML+S  C
Sbjct: 153 KKQILKEKFVYERINLGRIPLMLKSMFC 180


>gi|405122465|gb|AFR97232.1| DNA-directed RNA polymerase [Cryptococcus neoformans var. grubii H99]
          Length = 1123

 Score =  301 bits (772), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 148/262 (56%), Positives = 190/262 (72%), Gaps = 7/262 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ NRIDTL+Y + Y Q+PMV++KTI +  
Sbjct: 688  GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLNRIDTLLYLMTYPQQPMVKTKTIELIG 747

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            ++KLPAGQNAT+AVMSYSGYDIEDALI+N+AS+DRGFGRC V +     ++ + N +H+R
Sbjct: 748  YNKLPAGQNATVAVMSYSGYDIEDALILNRASVDRGFGRCHVLKKVTTPMRTFHNGSHER 807

Query: 1033 ILGPLLEADTRKPVYRHRALDQ-DGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYK 1091
               P  +   R   Y    +D+ DG+ APG  I +  V++++  P +        T  YK
Sbjct: 808  TAYP--DPPPRPDAYTF--VDKADGMTAPGATINQYDVMIHRETP-VDTRGGGADTQLYK 862

Query: 1092 EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVE 1151
             +PV++K   P  ++KV+++   ED  LIK+L RQTRRPE+GDKFSSRHGQKGV GLIV 
Sbjct: 863  PMPVTHKTPEPILVDKVMLTE-GEDGALIKILTRQTRRPELGDKFSSRHGQKGVCGLIVP 921

Query: 1152 QEDMPFNESGICPDIIMNPHGL 1173
            Q DMPFN+ GI PDIIMNPHG 
Sbjct: 922  QADMPFNDQGIVPDIIMNPHGF 943



 Score =  262 bits (670), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 124/191 (64%), Positives = 154/191 (80%), Gaps = 1/191 (0%)

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
            YK +PV++K   P  ++KV+++   ED  LIK+L RQTRRPE+GDKFSSRHGQKGV GLI
Sbjct: 861  YKPMPVTHKTPEPILVDKVMLTE-GEDGALIKILTRQTRRPELGDKFSSRHGQKGVCGLI 919

Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
            V Q DMPFN+ GI PDIIMNPHG+PSRMTVGK+IELL+GKAG++ G  + GTAFGG+K+V
Sbjct: 920  VPQADMPFNDQGIVPDIIMNPHGFPSRMTVGKMIELLSGKAGVVAGKLQYGTAFGGSKVV 979

Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
            D+ + LI +G++Y GKD+  SGITG+ +EAY+Y GP+YYQKLKHMV DK+HAR  GPR  
Sbjct: 980  DMSQILIDNGFSYGGKDMLTSGITGQPMEAYVYFGPIYYQKLKHMVMDKMHARPTGPRAN 1039

Query: 1362 LTRQPTGRRWK 1372
            LTRQPT  R K
Sbjct: 1040 LTRQPTEGRSK 1050



 Score =  209 bits (531), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 104/172 (60%), Positives = 128/172 (74%), Gaps = 3/172 (1%)

Query: 175 DKIIPKI-KAAQFDIVNHMRQ--DTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSY 231
           DKI+ K  +A  FD    +RQ  D IT A   +I TGNW+++RF +ER GVT VLSRLS+
Sbjct: 404 DKILEKPNRAGPFDAGTLIRQGGDPITQAFVRSISTGNWSLKRFHVERAGVTHVLSRLSF 463

Query: 232 ISGLGMMTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTE 291
           I+ LGMMTRI+SQFEKTRKVSGPR+LQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT+
Sbjct: 464 IAALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTD 523

Query: 292 NDEKNMLKIMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAGITCHHKEVCK 343
             E  ++K+ + +G+E I++  G EL  PGV +V VNG L G+T   K   +
Sbjct: 524 VPEAPLVKLAFMLGVEDISLVTGNELYRPGVLMVQVNGTLIGVTNMAKRFVR 575



 Score =  161 bits (408), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 79/132 (59%), Positives = 94/132 (71%), Gaps = 15/132 (11%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKR 751
           FD FL  G +EYLDVNE NDS IA  E+ I  G TTHLEI PFT+LG  AG         
Sbjct: 639 FDHFLRAGLVEYLDVNEENDSFIACYENEIEEG-TTHLEIEPFTILGAVAG--------- 688

Query: 752 FHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTI 811
                L+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ NRIDTL+Y + Y Q+PMV++KTI
Sbjct: 689 -----LIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLNRIDTLLYLMTYPQQPMVKTKTI 743

Query: 812 RITNFHKLPAGK 823
            +  ++KLPAG+
Sbjct: 744 ELIGYNKLPAGQ 755



 Score =  107 bits (268), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 65/86 (75%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           K TP D A+  L++  + H+PV NM F+ K +YLA M RR+++A+ D  M+DDRDY GNK
Sbjct: 316 KLTPSDIAQQALAAMVLGHVPVRNMNFRPKCIYLATMSRRVLMAMIDDHMVDDRDYVGNK 375

Query: 509 RLELAGSLLSLMFEDVFKRFNSELKE 534
           RLELAG LLSL+FED FK FNSELK+
Sbjct: 376 RLELAGQLLSLLFEDSFKTFNSELKK 401



 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 50/61 (81%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           + DKW+L+ +FLK KGLVK H+DSF+YF+NV+IK ++ AN+ + SD++P +Y++Y DI V
Sbjct: 21  VEDKWQLLPAFLKVKGLVKQHLDSFNYFVNVDIKAILAANSLVISDINPKYYIRYTDIRV 80

Query: 172 G 172
           G
Sbjct: 81  G 81



 Score = 59.7 bits (143), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 41/71 (57%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQ 400
           V +P   ++       +P ECRL D TYSAPI VD+EY    +R  +  + IG +P+ML+
Sbjct: 80  VGRPARHDANQVASALSPMECRLTDSTYSAPIYVDVEYMGEEKRSKQRGVQIGMLPVMLR 139

Query: 401 SSKCVLRNKTE 411
           S  C L+ K E
Sbjct: 140 SDLCNLKGKNE 150


>gi|321261728|ref|XP_003195583.1| DNA-directed RNA polymerase [Cryptococcus gattii WM276]
 gi|317462057|gb|ADV23796.1| DNA-directed RNA polymerase, putative [Cryptococcus gattii WM276]
          Length = 1129

 Score =  301 bits (772), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 149/262 (56%), Positives = 190/262 (72%), Gaps = 7/262 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ NRIDTL+Y + Y Q+PMV++KTI +  
Sbjct: 676  GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLNRIDTLLYLMTYPQQPMVKTKTIELIG 735

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            ++KLPAGQNAT+AVMSYSGYDIEDALI+N+AS+DRGFGRC V +     ++ + N +H+R
Sbjct: 736  YNKLPAGQNATVAVMSYSGYDIEDALILNRASVDRGFGRCHVLKKVTTPMRTFHNGSHER 795

Query: 1033 ILGPLLEADTRKPVYRHRALDQ-DGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYK 1091
               P  +   R   Y    +D+ DG+ APG  I +  V++++  P I        T  YK
Sbjct: 796  TAYP--DPPPRPDAYTF--VDKADGMTAPGATINQYDVMIHRETP-IDTRGGGADTQLYK 850

Query: 1092 EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVE 1151
             +PV++K   P  ++KV+++   ED  LIK+L RQTRRPE+GDKFSSRHGQKGV GLIV 
Sbjct: 851  PMPVTHKTPEPILVDKVMLTE-GEDGALIKILTRQTRRPELGDKFSSRHGQKGVCGLIVP 909

Query: 1152 QEDMPFNESGICPDIIMNPHGL 1173
            Q DMPFN+ GI PDIIMNPHG 
Sbjct: 910  QADMPFNDQGIVPDIIMNPHGF 931



 Score =  262 bits (670), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 124/191 (64%), Positives = 154/191 (80%), Gaps = 1/191 (0%)

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
            YK +PV++K   P  ++KV+++   ED  LIK+L RQTRRPE+GDKFSSRHGQKGV GLI
Sbjct: 849  YKPMPVTHKTPEPILVDKVMLTE-GEDGALIKILTRQTRRPELGDKFSSRHGQKGVCGLI 907

Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
            V Q DMPFN+ GI PDIIMNPHG+PSRMTVGK+IELL+GKAG++ G  + GTAFGG+K+V
Sbjct: 908  VPQADMPFNDQGIVPDIIMNPHGFPSRMTVGKMIELLSGKAGVIAGKLQYGTAFGGSKVV 967

Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
            D+ + LI +G++Y GKD+  SGITG+ +EAY+Y GP+YYQKLKHMV DK+HAR  GPR  
Sbjct: 968  DMSQILIDNGFSYGGKDMLTSGITGQPMEAYVYFGPIYYQKLKHMVMDKMHARPTGPRAN 1027

Query: 1362 LTRQPTGRRWK 1372
            LTRQPT  R K
Sbjct: 1028 LTRQPTEGRSK 1038



 Score =  209 bits (532), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 104/172 (60%), Positives = 130/172 (75%), Gaps = 3/172 (1%)

Query: 175 DKIIPKI-KAAQFDIVNHMRQ--DTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSY 231
           DKI+ K  +A  FD    +RQ  D IT A   +I TGNW+++RF +ER GVT VLSRLS+
Sbjct: 392 DKILEKPNRAGPFDAGTLIRQGGDPITQAFVRSISTGNWSLKRFHVERAGVTHVLSRLSF 451

Query: 232 ISGLGMMTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTE 291
           I+ LGMMTRI+SQFEKTRKVSGPR+LQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT+
Sbjct: 452 IAALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTD 511

Query: 292 NDEKNMLKIMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAGITCHHKEVCK 343
             E  ++K+ + +G+E I++  G EL  PGV++V VNG L G+T   K+  +
Sbjct: 512 VPEAPLVKMAFMLGVEDISLVTGNELYRPGVHMVQVNGTLIGVTNMAKKFVR 563



 Score =  160 bits (404), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 78/132 (59%), Positives = 94/132 (71%), Gaps = 15/132 (11%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKR 751
           FD FL  G +EYLDVNE ND+ IA  E+ I  G TTHLEI PFT+LG  AG         
Sbjct: 627 FDHFLRAGLVEYLDVNEENDAFIACYENEIEEG-TTHLEIEPFTILGAVAG--------- 676

Query: 752 FHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTI 811
                L+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ NRIDTL+Y + Y Q+PMV++KTI
Sbjct: 677 -----LIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLNRIDTLLYLMTYPQQPMVKTKTI 731

Query: 812 RITNFHKLPAGK 823
            +  ++KLPAG+
Sbjct: 732 ELIGYNKLPAGQ 743



 Score =  108 bits (269), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 65/86 (75%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           K TP D A+  L++  + H+PV NM F+ K +YLA M RR+++A+ D  M+DDRDY GNK
Sbjct: 304 KLTPSDIAQQALAAMVLGHVPVRNMNFRPKCIYLATMTRRVLMAMIDDHMVDDRDYVGNK 363

Query: 509 RLELAGSLLSLMFEDVFKRFNSELKE 534
           RLELAG LLSL+FED FK FNSELK+
Sbjct: 364 RLELAGQLLSLLFEDSFKTFNSELKK 389



 Score = 82.8 bits (203), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 50/61 (81%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           + DKW+L+ +FLK KGLVK H+DSF+YF+NV+IK ++ AN+ + SD++P +Y++Y DI V
Sbjct: 21  VEDKWQLLPAFLKVKGLVKQHLDSFNYFVNVDIKAILAANSLVISDINPKYYIRYTDIRV 80

Query: 172 G 172
           G
Sbjct: 81  G 81



 Score = 59.3 bits (142), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 41/71 (57%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQ 400
           V +P   ++       +P ECRL D TYSAPI VD+EY    +R  +  + IG +P+ML+
Sbjct: 80  VGRPARHDANQVASALSPMECRLTDSTYSAPIYVDVEYMGEEKRSKQRGVQIGMLPVMLR 139

Query: 401 SSKCVLRNKTE 411
           S  C L+ K E
Sbjct: 140 SDLCNLKGKNE 150


>gi|453088008|gb|EMF16049.1| DNA-directed RNA polymerase III subunit RPC2 [Mycosphaerella
            populorum SO2202]
          Length = 1204

 Score =  301 bits (771), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 142/261 (54%), Positives = 181/261 (69%), Gaps = 6/261 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ  RIDTL+Y +VY Q+PMV ++TI +  
Sbjct: 748  GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFTRIDTLLYLMVYPQKPMVTTRTIELVK 807

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNA +AVMSYSGYDIEDAL++NKAS DRGFGRC V++     LK Y N   DR
Sbjct: 808  YDKLPAGQNAVVAVMSYSGYDIEDALVLNKASCDRGFGRCQVFKKVSMPLKSYQNGYTDR 867

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKE 1092
            +      AD      RHR + +DG+V  G ++      + K  P   V  I  +   +  
Sbjct: 868  L------ADRDPNNARHRKIGKDGLVEVGSELDNGDTYMLKEAPINQVQTIPNSQQRWSP 921

Query: 1093 VPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQ 1152
              +SYK   P Y +KV++++N  +  ++K+  RQTRRPEIGDKFSSRHGQKGV+GL+ EQ
Sbjct: 922  AHMSYKTPDPCYADKVVITANDRNDTILKIQTRQTRRPEIGDKFSSRHGQKGVVGLLAEQ 981

Query: 1153 EDMPFNESGICPDIIMNPHGL 1173
             DMPF++ G+ PDIIMNPHG 
Sbjct: 982  ADMPFSDQGVVPDIIMNPHGF 1002



 Score =  258 bits (658), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 114/186 (61%), Positives = 151/186 (81%)

Query: 1187 VSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQED 1246
            +SYK   P Y +KV++++N  +  ++K+  RQTRRPEIGDKFSSRHGQKGV+GL+ EQ D
Sbjct: 924  MSYKTPDPCYADKVVITANDRNDTILKIQTRQTRRPEIGDKFSSRHGQKGVVGLLAEQAD 983

Query: 1247 MPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEE 1306
            MPF++ G+ PDIIMNPHG+PSRMTVGK++EL++GKAG++ G  + GTAFGG+K+ D+   
Sbjct: 984  MPFSDQGVVPDIIMNPHGFPSRMTVGKMLELVSGKAGVLAGKQEYGTAFGGSKVEDMGAV 1043

Query: 1307 LIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQP 1366
            LI+HG++Y GKD   SGITGE+L  Y++ GP+YYQKLKHMVQDK+HAR+ GPR +LTRQP
Sbjct: 1044 LIKHGFSYSGKDCLTSGITGESLPFYVFFGPIYYQKLKHMVQDKMHARATGPRAILTRQP 1103

Query: 1367 TGRRWK 1372
            T  R +
Sbjct: 1104 TEGRSR 1109



 Score =  201 bits (511), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 109/211 (51%), Positives = 143/211 (67%), Gaps = 7/211 (3%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIK-AAQFDIVNH 191
           +D  DY  N  ++   Q  + ++ D   LF      I + + DK++ K    ++FD V  
Sbjct: 426 VDDRDYVGNKRLELAGQMLSLLFED---LFKDSIRQIQMTM-DKMLQKHNPTSEFDPVRI 481

Query: 192 MRQ--DTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
           + Q    IT+ +  AI TGNWT++RF+M+R GVT VLSRLSYIS LGMMTRI+SQFEKTR
Sbjct: 482 VEQIESRITSGMERAISTGNWTLKRFRMDRAGVTHVLSRLSYISALGMMTRISSQFEKTR 541

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHI 309
           KVSGPR+LQ SQ+GMLC SDTPEGEACGLVKNLALMTHITT +DE  + K+MY +G E +
Sbjct: 542 KVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTADDEGPVRKMMYVLGAEDV 601

Query: 310 AMFNGEELSSPGVYLVFVNGILAGITCHHKE 340
              +G E+   G Y++F+NG  A +T   K+
Sbjct: 602 TSASGTEIYGAGAYIIFINGTPAALTRQPKQ 632



 Score =  157 bits (396), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 78/139 (56%), Positives = 93/139 (66%), Gaps = 15/139 (10%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G   FDD L  G +EYLDVNE NDS+IAV E  I     THLEI PFT+LG  AG     
Sbjct: 695 GTMTFDDALSRGIVEYLDVNEENDSNIAVYEKDINDS-HTHLEIEPFTILGAVAG----- 748

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ  RIDTL+Y +VY Q+PMV 
Sbjct: 749 ---------LIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFTRIDTLLYLMVYPQKPMVT 799

Query: 808 SKTIRITNFHKLPAGKCQI 826
           ++TI +  + KLPAG+  +
Sbjct: 800 TRTIELVKYDKLPAGQNAV 818



 Score = 93.2 bits (230), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 42/77 (54%), Positives = 59/77 (76%)

Query: 450 KTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKR 509
           KTP   A + L+ T I H+ V  + F+ KA+Y+A M RR+++A++DP ++DDRDY GNKR
Sbjct: 377 KTPKQQALEKLAGTIIPHVEVEGLNFRPKALYIAHMTRRVLMAINDPKLVDDRDYVGNKR 436

Query: 510 LELAGSLLSLMFEDVFK 526
           LELAG +LSL+FED+FK
Sbjct: 437 LELAGQMLSLLFEDLFK 453



 Score = 77.4 bits (189), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 34/57 (59%), Positives = 46/57 (80%)

Query: 355 QTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKTE 411
           + TP+ECRLRD+TYSAPI VD  Y R S  V ++D++IGR+P+ML+SSKCVL  ++E
Sbjct: 169 EVTPNECRLRDMTYSAPIYVDFVYPRQSGNVRKTDVLIGRVPMMLRSSKCVLHGRSE 225



 Score = 76.3 bits (186), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/65 (50%), Positives = 49/65 (75%)

Query: 113 RDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           RDKW L+ +FL+ KGL+K H DSFDYFI+VE+KK++QAN+ I+S V    ++++ DI +G
Sbjct: 94  RDKWNLLPAFLQVKGLIKQHTDSFDYFIDVEMKKIVQANSMIHSQVKAEKWIRFTDIRIG 153

Query: 173 IADKI 177
              +I
Sbjct: 154 KPSRI 158


>gi|58271124|ref|XP_572718.1| DNA-directed RNA polymerase [Cryptococcus neoformans var. neoformans
            JEC21]
 gi|134114572|ref|XP_773994.1| hypothetical protein CNBH0410 [Cryptococcus neoformans var.
            neoformans B-3501A]
 gi|50256624|gb|EAL19347.1| hypothetical protein CNBH0410 [Cryptococcus neoformans var.
            neoformans B-3501A]
 gi|57228977|gb|AAW45411.1| DNA-directed RNA polymerase, putative [Cryptococcus neoformans var.
            neoformans JEC21]
          Length = 1129

 Score =  301 bits (771), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 148/262 (56%), Positives = 190/262 (72%), Gaps = 7/262 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ NRIDTL+Y + Y Q+PMV++KTI +  
Sbjct: 676  GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLNRIDTLLYLMTYPQQPMVKTKTIELIG 735

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            ++KLPAGQNAT+AVMSYSGYDIEDALI+N+AS+DRGFGRC V +     ++ + N +H+R
Sbjct: 736  YNKLPAGQNATVAVMSYSGYDIEDALILNRASVDRGFGRCHVLKKVTTPMRTFHNGSHER 795

Query: 1033 ILGPLLEADTRKPVYRHRALDQ-DGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYK 1091
               P  +   R   Y    +D+ DG+ APG  I +  V++++  P +        T  YK
Sbjct: 796  TAYP--DPPPRPDAYTF--VDKADGMTAPGATINQYDVMIHRETP-VDTRGGGADTQLYK 850

Query: 1092 EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVE 1151
             +PV++K   P  ++KV+++   ED  LIK+L RQTRRPE+GDKFSSRHGQKGV GLIV 
Sbjct: 851  PMPVTHKTPEPILVDKVMLTE-GEDGALIKILTRQTRRPELGDKFSSRHGQKGVCGLIVP 909

Query: 1152 QEDMPFNESGICPDIIMNPHGL 1173
            Q DMPFN+ GI PDIIMNPHG 
Sbjct: 910  QADMPFNDQGIVPDIIMNPHGF 931



 Score =  262 bits (670), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 124/191 (64%), Positives = 154/191 (80%), Gaps = 1/191 (0%)

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
            YK +PV++K   P  ++KV+++   ED  LIK+L RQTRRPE+GDKFSSRHGQKGV GLI
Sbjct: 849  YKPMPVTHKTPEPILVDKVMLTE-GEDGALIKILTRQTRRPELGDKFSSRHGQKGVCGLI 907

Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
            V Q DMPFN+ GI PDIIMNPHG+PSRMTVGK+IELL+GKAG++ G  + GTAFGG+K+V
Sbjct: 908  VPQADMPFNDQGIVPDIIMNPHGFPSRMTVGKMIELLSGKAGVVAGKLQYGTAFGGSKVV 967

Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
            D+ + LI +G++Y GKD+  SGITG+ +EAY+Y GP+YYQKLKHMV DK+HAR  GPR  
Sbjct: 968  DMSQILIDNGFSYGGKDMLTSGITGQPMEAYVYFGPIYYQKLKHMVMDKMHARPTGPRAN 1027

Query: 1362 LTRQPTGRRWK 1372
            LTRQPT  R K
Sbjct: 1028 LTRQPTEGRSK 1038



 Score =  209 bits (532), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 104/172 (60%), Positives = 129/172 (75%), Gaps = 3/172 (1%)

Query: 175 DKIIPKI-KAAQFDIVNHMRQ--DTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSY 231
           DKI+ K  +A  FD    +RQ  D IT A   +I TGNW+++RF +ER GVT VLSRLS+
Sbjct: 392 DKILEKPNRAGPFDAGTLIRQGGDPITQAFVRSISTGNWSLKRFHVERAGVTHVLSRLSF 451

Query: 232 ISGLGMMTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTE 291
           I+ LGMMTRI+SQFEKTRKVSGPR+LQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT+
Sbjct: 452 IAALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTD 511

Query: 292 NDEKNMLKIMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAGITCHHKEVCK 343
             E  ++K+ + +G+E I++  G EL  PGV++V VNG L G+T   K   +
Sbjct: 512 VPETPLVKMAFMLGVEDISLVTGNELYRPGVHMVQVNGTLIGVTNMAKRFVR 563



 Score =  161 bits (407), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 79/132 (59%), Positives = 94/132 (71%), Gaps = 15/132 (11%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKR 751
           FD FL  G +EYLDVNE NDS IA  E+ I  G TTHLEI PFT+LG  AG         
Sbjct: 627 FDHFLRAGLVEYLDVNEENDSFIACYENEIEEG-TTHLEIEPFTILGAVAG--------- 676

Query: 752 FHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTI 811
                L+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ NRIDTL+Y + Y Q+PMV++KTI
Sbjct: 677 -----LIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLNRIDTLLYLMTYPQQPMVKTKTI 731

Query: 812 RITNFHKLPAGK 823
            +  ++KLPAG+
Sbjct: 732 ELIGYNKLPAGQ 743



 Score =  108 bits (269), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 65/86 (75%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           K TP D A+  L++  + H+PV NM F+ K +YLA M RR+++A+ D  M+DDRDY GNK
Sbjct: 304 KLTPSDIAQQALAAMVLGHVPVRNMNFRPKCIYLATMARRVLMAMIDDHMVDDRDYVGNK 363

Query: 509 RLELAGSLLSLMFEDVFKRFNSELKE 534
           RLELAG LLSL+FED FK FNSELK+
Sbjct: 364 RLELAGQLLSLLFEDSFKTFNSELKK 389



 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 50/61 (81%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           + DKW+L+ +FLK KGLVK H+DSF+YF+NV+IK ++ AN+ + SD++P +Y++Y DI V
Sbjct: 21  VEDKWQLLPAFLKVKGLVKQHLDSFNYFVNVDIKAILAANSLVISDINPKYYIRYTDIRV 80

Query: 172 G 172
           G
Sbjct: 81  G 81



 Score = 59.3 bits (142), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 41/71 (57%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQ 400
           V +P   ++       +P ECRL D TYSAPI VD+EY    +R  +  + IG +P+ML+
Sbjct: 80  VGRPARHDANQVASALSPMECRLTDSTYSAPIYVDVEYMGEEKRSKQRGVQIGMLPVMLR 139

Query: 401 SSKCVLRNKTE 411
           S  C L+ K E
Sbjct: 140 SDLCNLKGKNE 150


>gi|452845424|gb|EME47357.1| hypothetical protein DOTSEDRAFT_125117 [Dothistroma septosporum
            NZE10]
          Length = 1147

 Score =  300 bits (769), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 144/261 (55%), Positives = 186/261 (71%), Gaps = 6/261 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ  RIDTL+Y +VY Q PMV+++TI +  
Sbjct: 691  GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFTRIDTLLYLMVYPQAPMVKTRTIELVK 750

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNA +AVMSYSGYDIEDAL++NKAS DRGFGRC V++     LK Y N   DR
Sbjct: 751  YDKLPAGQNAVVAVMSYSGYDIEDALVLNKASCDRGFGRCQVFKKVSMPLKAYGNGHTDR 810

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKE 1092
             +G     +T     RHR +  DGIV  G ++    + + K  P    +++S    ++  
Sbjct: 811  -MGTKDNNNT-----RHRKIGTDGIVEVGVELENSDMYMLKECPVNQATSVSQRDQKWSP 864

Query: 1093 VPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQ 1152
            + +SYK   P Y +KV+V++N  ++ +IK+  RQTRRPEIGDKFSSRHGQKGV+GL+ EQ
Sbjct: 865  MHMSYKLPDPCYADKVMVTANEANSTIIKIQTRQTRRPEIGDKFSSRHGQKGVVGLLAEQ 924

Query: 1153 EDMPFNESGICPDIIMNPHGL 1173
             DMPF++ G+ PDIIMNPHG 
Sbjct: 925  ADMPFSDQGVVPDIIMNPHGF 945



 Score =  265 bits (677), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 129/250 (51%), Positives = 177/250 (70%), Gaps = 7/250 (2%)

Query: 1126 QTRRPEIGDKFSSRH---GQKGVIGLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITEY 1182
             T R    D  ++RH   G  G++ + VE E+        CP   +N        R  ++
Sbjct: 807  HTDRMGTKDNNNTRHRKIGTDGIVEVGVELENSDMYMLKECP---VN-QATSVSQRDQKW 862

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
              + +SYK   P Y +KV+V++N  ++ +IK+  RQTRRPEIGDKFSSRHGQKGV+GL+ 
Sbjct: 863  SPMHMSYKLPDPCYADKVMVTANEANSTIIKIQTRQTRRPEIGDKFSSRHGQKGVVGLLA 922

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
            EQ DMPF++ G+ PDIIMNPHG+PSRMTVGK++EL++GKAG++ G ++ GTAFGG+K+ D
Sbjct: 923  EQADMPFSDQGVVPDIIMNPHGFPSRMTVGKMLELVSGKAGVLAGKHEYGTAFGGSKVED 982

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
            +   L++HG++Y GKD   SGITGE+L  Y++ GP+YYQKLKHMVQDK+H+RS GPR +L
Sbjct: 983  MGRTLVKHGFSYSGKDCLTSGITGESLPMYVFFGPIYYQKLKHMVQDKMHSRSTGPRAIL 1042

Query: 1363 TRQPTGRRWK 1372
            TRQPT  R +
Sbjct: 1043 TRQPTEGRSR 1052



 Score =  199 bits (507), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 109/224 (48%), Positives = 145/224 (64%), Gaps = 9/224 (4%)

Query: 118 LVLSFLKEK---GLVKPH-IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGI 173
           L ++F+  +    ++ P  +D  DY  N  ++   Q  A ++ D   LF      I + +
Sbjct: 350 LYIAFMTRRVLMAMIDPKLVDDRDYVGNKRLELAGQMLALLFED---LFKDCTRQIFINM 406

Query: 174 ADKIIPKIKAAQFDIVNHMRQ--DTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSY 231
             ++      A+FD +  + Q    IT+ +  AI TGNWT++RF+M+R GVT VLSRLSY
Sbjct: 407 EKQLKKSNPTAEFDPLRLIEQCDARITSGMERAISTGNWTLKRFRMDRAGVTHVLSRLSY 466

Query: 232 ISGLGMMTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTE 291
           IS LGMMTRI SQFEKTRKVSGPR+LQ SQ+GMLC SDTPEGEACGLVKNLALMTHITT 
Sbjct: 467 ISALGMMTRITSQFEKTRKVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTA 526

Query: 292 NDEKNMLKIMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAGIT 335
           ++E  +  IMY +G E +   +G E+ + G Y+VFVNG    +T
Sbjct: 527 DEEGPVRMIMYVLGAEEVTSASGAEIYNDGAYIVFVNGTPTALT 570



 Score =  157 bits (398), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 79/136 (58%), Positives = 93/136 (68%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G   FDD L  G +EYLDVNE NDS+IAV E  I    TTHLEI PFT+LG  AG     
Sbjct: 638 GSMNFDDALSRGIVEYLDVNEENDSNIAVYEKDIDEH-TTHLEIEPFTILGAVAG----- 691

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ  RIDTL+Y +VY Q PMV+
Sbjct: 692 ---------LIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFTRIDTLLYLMVYPQAPMVK 742

Query: 808 SKTIRITNFHKLPAGK 823
           ++TI +  + KLPAG+
Sbjct: 743 TRTIELVKYDKLPAGQ 758



 Score =  101 bits (251), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 47/94 (50%), Positives = 68/94 (72%), Gaps = 6/94 (6%)

Query: 439 KLRQKRFQTYK------KTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLA 492
           +L+ +RF  Y       KTP   A + L++T I H+PV +M F+ KA+Y+A M RR+++A
Sbjct: 303 RLKPERFPVYASPTGEVKTPKQKAMEKLAATIIPHVPVEDMNFRPKALYIAFMTRRVLMA 362

Query: 493 LSDPDMLDDRDYYGNKRLELAGSLLSLMFEDVFK 526
           + DP ++DDRDY GNKRLELAG +L+L+FED+FK
Sbjct: 363 MIDPKLVDDRDYVGNKRLELAGQMLALLFEDLFK 396



 Score = 71.6 bits (174), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 43/55 (78%)

Query: 357 TPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKTE 411
           TP+ECRLRD+TYSAPI +D  Y R S  V ++++ IGRMP+ML+SS+CVL  + E
Sbjct: 111 TPNECRLRDMTYSAPIYIDYVYPRQSGNVKKTNVQIGRMPMMLRSSRCVLSGRPE 165



 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/61 (49%), Positives = 44/61 (72%), Gaps = 1/61 (1%)

Query: 113 RDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYS-DVDPLFYLKYLDIHV 171
           +DKW L+ +FL+ KGL+K H DSFDYF NVE+KK+++AN  I S +     ++++ DI V
Sbjct: 33  QDKWNLLPAFLRVKGLIKQHTDSFDYFCNVELKKILKANEMIISKETKGKKWIRFTDIRV 92

Query: 172 G 172
           G
Sbjct: 93  G 93


>gi|313237761|emb|CBY12898.1| unnamed protein product [Oikopleura dioica]
          Length = 1139

 Score =  300 bits (768), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 149/265 (56%), Positives = 189/265 (71%), Gaps = 34/265 (12%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYP HNQ+PRNTYQCAMGKQAMG I  NQ+ RID+ +YNLVY QRP+V+++TI +  
Sbjct: 684  GLIPYPDHNQSPRNTYQCAMGKQAMGTIAMNQRERIDSCLYNLVYPQRPLVKTRTIELIG 743

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQ---YPNQT 1029
            F +LPAGQNAT+AVMSYSGYDIEDAL++NKAS+DRG+GRCLVYRN K  L++        
Sbjct: 744  FEQLPAGQNATVAVMSYSGYDIEDALVLNKASVDRGYGRCLVYRNEKTQLQRRGTLVETI 803

Query: 1030 HDRILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPE 1089
             +RI GP L+A + + +     LD DGIVAPGE++ +R        PT++ S        
Sbjct: 804  EERIDGPALDAKSGEKIRADECLDMDGIVAPGERVKDRA-------PTMAKSQ------- 849

Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAF--LIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
                        P ++E+V++   SEDA   ++K+  RQTRRPE+GDKFSSRHGQKGV G
Sbjct: 850  ------------PIHIERVMI---SEDATWRMVKLSYRQTRRPELGDKFSSRHGQKGVTG 894

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHG 1172
            LIV QE+MPFNE G+CPD+IMNPHG
Sbjct: 895  LIVPQENMPFNEIGMCPDVIMNPHG 919



 Score =  230 bits (587), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 110/183 (60%), Positives = 139/183 (75%), Gaps = 5/183 (2%)

Query: 1192 SVPSYLEKVLVSSNSEDAF--LIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPF 1249
            S P ++E+V++S   EDA   ++K+  RQTRRPE+GDKFSSRHGQKGV GLIV QE+MPF
Sbjct: 848  SQPIHIERVMIS---EDATWRMVKLSYRQTRRPELGDKFSSRHGQKGVTGLIVPQENMPF 904

Query: 1250 NESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIR 1309
            NE G+CPD+IMNPHGYPSRMTVGKL+E +  KAG + G +  GTAFGG    ++ + ++ 
Sbjct: 905  NEIGMCPDVIMNPHGYPSRMTVGKLMECIGSKAGALSGKFHYGTAFGGNTTEEMAQTMLD 964

Query: 1310 HGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGR 1369
            +G+NY GKD+  SG TGE LEAYI+ GP+YYQKL+HMV DK+HAR+ G    LTRQP   
Sbjct: 965  YGFNYYGKDLLMSGETGEPLEAYIFMGPIYYQKLRHMVMDKMHARATGKVHNLTRQPLEG 1024

Query: 1370 RWK 1372
            R K
Sbjct: 1025 RAK 1027



 Score =  186 bits (472), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 99/224 (44%), Positives = 147/224 (65%), Gaps = 11/224 (4%)

Query: 124 KEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKA 183
           K +G++K   D  DY+ N    K +Q   ++ S +    +  + D       K + K  A
Sbjct: 329 KRRGMIKA--DDRDYYGN----KRIQLAGDLISLLFEEHFKNFNDELRRTIGKKLEKKTA 382

Query: 184 AQFDIVNHMR--QDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGL--GMMT 239
              D+++ M+  Q+ IT A+ AAIQTGNW ++RFKM+R+G+T++L+R+S+IS +  G MT
Sbjct: 383 QVVDVISSMKSLQNKITLAMEAAIQTGNWNLKRFKMDRKGITEILNRMSFISIILVGTMT 442

Query: 240 RINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLK 299
           RI   FEKT KV+GPR+LQGSQWGMLCPSDTPEG  CGLVKN+AL++H+TT  D+K + +
Sbjct: 443 RIKGHFEKTMKVTGPRALQGSQWGMLCPSDTPEGAQCGLVKNMALLSHVTTFEDDKPIHR 502

Query: 300 IMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAGITCHHKEVCK 343
           ++ N+G+E  +  +G +L     YLVF+NG L G T + K + +
Sbjct: 503 LLINLGVEETSTLSGYDLHGAN-YLVFLNGALVGATRNPKSLTR 545



 Score =  130 bits (328), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 73/175 (41%), Positives = 97/175 (55%), Gaps = 40/175 (22%)

Query: 675 QPRPTFLNMHQFL-GFKRFDDFLYEGKIEYLDVNEGNDSHIA------------------ 715
           +P+ T  +++  L G  +F DF+  G IEYLDVNE N + I                   
Sbjct: 591 RPKVTQKHINALLEGRVKFPDFVKNGLIEYLDVNEENSALIDTTFFNYFRKIFFNQNLIN 650

Query: 716 -------VSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPR 768
                  ++   +   +    EI PF LLGVCAG              L+PYP HNQ+PR
Sbjct: 651 RWLKRAYLNFKKVNNFLNCSKEIEPFALLGVCAG--------------LIPYPDHNQSPR 696

Query: 769 NTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
           NTYQCAMGKQAMG I  NQ+ RID+ +YNLVY QRP+V+++TI +  F +LPAG+
Sbjct: 697 NTYQCAMGKQAMGTIAMNQRERIDSCLYNLVYPQRPLVKTRTIELIGFEQLPAGQ 751



 Score = 79.3 bits (194), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/74 (52%), Positives = 50/74 (67%), Gaps = 1/74 (1%)

Query: 338 HKEVCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPI 397
           H  V  P++E     +   TPHECRLRD+TYSAPI VD+ Y R +Q      LVIGRMPI
Sbjct: 72  HIYVDPPDVEYGMR-SEAITPHECRLRDMTYSAPIKVDVTYVRDNQIRKARGLVIGRMPI 130

Query: 398 MLQSSKCVLRNKTE 411
           ML+S++CVL N ++
Sbjct: 131 MLRSARCVLANMSQ 144



 Score = 63.5 bits (153), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 40/107 (37%), Positives = 61/107 (57%), Gaps = 25/107 (23%)

Query: 432 SPLLSCKKLRQKRFQTYKKTPVD---DARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRR 488
           +P++S  ++ Q RFQ   +TP +   +  ++L ST + ++P     +K + M  A     
Sbjct: 288 NPIVSRSQM-QSRFQV--RTPRNREQEVHNWLVSTLLVNVPYC---YKRRGMIKA----- 336

Query: 489 MVLALSDPDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELKET 535
                      DDRDYYGNKR++LAG L+SL+FE+ FK FN EL+ T
Sbjct: 337 -----------DDRDYYGNKRIQLAGDLISLLFEEHFKNFNDELRRT 372



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 50/79 (63%), Gaps = 4/79 (5%)

Query: 99  VTDETSKLKDSPEIRDKWKLVLSFLKEKGLVKPH--IDSFDYFINVEIKKLMQANANIYS 156
           + D  S  +   E+++KWKLV +FL+ +GLVK H  +DSF+Y +   ++K+++ANA   +
Sbjct: 3   INDYVSPYESISEVQEKWKLVPAFLETRGLVKQHLDLDSFNYLLTQGLQKIIKANAR--T 60

Query: 157 DVDPLFYLKYLDIHVGIAD 175
           DVD  F+  Y  I+V   D
Sbjct: 61  DVDQNFFWNYDHIYVDPPD 79


>gi|378727686|gb|EHY54145.1| DNA-directed RNA polymerase III subunit C2 [Exophiala dermatitidis
            NIH/UT8656]
          Length = 1225

 Score =  300 bits (767), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 150/271 (55%), Positives = 189/271 (69%), Gaps = 16/271 (5%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I  NQ  RIDTL+Y +VY Q+P+ +++TI +  
Sbjct: 751  GLIPYPHHNQSPRNTYQCAMGKQAIGFIANNQFLRIDTLLYLMVYPQKPLCKTRTIELVK 810

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+AVMSYSGYDIEDAL++NKAS+DRGFGRC V R     LK Y N T D 
Sbjct: 811  YDKLPAGQNATVAVMSYSGYDIEDALVLNKASVDRGFGRCQVLRKYPVSLKLYANGTKDT 870

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMP----------TISVSA 1082
            + GP +E     PV  H  LD+DGI + G ++ + +V VNK +P          T S S 
Sbjct: 871  VEGPTMENGV--PVKAHALLDEDGIASVGAKVSQGEVYVNKYVPENANSSGLSDTASNSL 928

Query: 1083 ISMATPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQ 1142
             +   P+ ++    Y+   PSY++KV+VS       LIK+  RQTR PE+GDKFSSRHGQ
Sbjct: 929  GTSLMPQAQK----YRLPDPSYIDKVMVSEVESGNQLIKIQTRQTRVPEVGDKFSSRHGQ 984

Query: 1143 KGVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            KGV+G+I EQ DMPF++ GI PDIIMNPHG 
Sbjct: 985  KGVVGIIAEQVDMPFSDRGITPDIIMNPHGF 1015



 Score =  261 bits (668), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 119/184 (64%), Positives = 149/184 (80%)

Query: 1189 YKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMP 1248
            Y+   PSY++KV+VS       LIK+  RQTR PE+GDKFSSRHGQKGV+G+I EQ DMP
Sbjct: 939  YRLPDPSYIDKVMVSEVESGNQLIKIQTRQTRVPEVGDKFSSRHGQKGVVGIIAEQVDMP 998

Query: 1249 FNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELI 1308
            F++ GI PDIIMNPHG+PSRMTVGK++EL+AGKAG+++G ++ GTAFGG+KL D+ + LI
Sbjct: 999  FSDRGITPDIIMNPHGFPSRMTVGKMLELVAGKAGILKGKFEYGTAFGGSKLADLSKALI 1058

Query: 1309 RHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTG 1368
              GY+Y GKD   SGITGE L AY++ GP+YYQKLKHMVQDK+H+RSRGPR +LTRQPT 
Sbjct: 1059 EAGYSYDGKDYLTSGITGEPLPAYVFMGPIYYQKLKHMVQDKMHSRSRGPRAILTRQPTE 1118

Query: 1369 RRWK 1372
             R +
Sbjct: 1119 GRSR 1122



 Score =  190 bits (483), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 101/206 (49%), Positives = 136/206 (66%), Gaps = 7/206 (3%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPK---IKAAQFDIV 189
           +D  DY  N  ++   Q  + ++ D   LF     DI + + DK++ K    + A    V
Sbjct: 429 VDDRDYVGNKRLELAGQLLSLLFED---LFKKYNYDIKMNM-DKVLRKPNRTEMADPCTV 484

Query: 190 NHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
                + IT  +  AI TGNW ++RF+M+R GVT +LSRLS+I+ LGMMTRI+SQFEKTR
Sbjct: 485 MMGHANHITQGMNRAIATGNWNLKRFRMDRAGVTHLLSRLSFIASLGMMTRISSQFEKTR 544

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHI 309
           KVSGPR+LQ S +GMLCP+DTPEGEACGLVKNLALMTHITT+++E  + ++++ +G E I
Sbjct: 545 KVSGPRALQPSSFGMLCPADTPEGEACGLVKNLALMTHITTDDEEAPIKRLIFMLGAEDI 604

Query: 310 AMFNGEELSSPGVYLVFVNGILAGIT 335
               G EL +PG YLV +NG     T
Sbjct: 605 VTVGGTELYAPGSYLVLLNGTPVATT 630



 Score =  155 bits (391), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 77/136 (56%), Positives = 94/136 (69%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G   FDDFL  G +EYLDVNE NDS+IA+ ES I    TTHLEI PFT+LG  AG     
Sbjct: 698 GSMDFDDFLARGLVEYLDVNEENDSNIALYESDIN-ASTTHLEIEPFTVLGAVAG----- 751

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQA+G I  NQ  RIDTL+Y +VY Q+P+ +
Sbjct: 752 ---------LIPYPHHNQSPRNTYQCAMGKQAIGFIANNQFLRIDTLLYLMVYPQKPLCK 802

Query: 808 SKTIRITNFHKLPAGK 823
           ++TI +  + KLPAG+
Sbjct: 803 TRTIELVKYDKLPAGQ 818



 Score = 99.4 bits (246), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 44/89 (49%), Positives = 68/89 (76%)

Query: 445 FQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDY 504
           F   ++  V +A + +S+  IAH+P+ N+ F+ KA+Y+A M RR+++A  +P ++DDRDY
Sbjct: 375 FGQSRRNYVQEALEAVSNVFIAHVPIENLNFRPKAIYVAHMARRVLMAKQNPALVDDRDY 434

Query: 505 YGNKRLELAGSLLSLMFEDVFKRFNSELK 533
            GNKRLELAG LLSL+FED+FK++N ++K
Sbjct: 435 VGNKRLELAGQLLSLLFEDLFKKYNYDIK 463



 Score = 82.0 bits (201), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 48/60 (80%)

Query: 113 RDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           RDKW L+ +FLK KGLVK HIDSF++F+ VE+KK++ A   I SD+DP FY+KY +I+VG
Sbjct: 90  RDKWNLLPAFLKVKGLVKQHIDSFNHFVEVELKKIIDAEPVITSDIDPDFYIKYENIYVG 149



 Score = 76.3 bits (186), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 43/55 (78%)

Query: 357 TPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKTE 411
           TP+ECRLRD+TY+API VDI YT+      R  + IGR+PIML+SS+CVL NK+E
Sbjct: 171 TPNECRLRDMTYAAPILVDIRYTKSKVAYRRKGMPIGRLPIMLRSSRCVLANKSE 225


>gi|313221111|emb|CBY31939.1| unnamed protein product [Oikopleura dioica]
          Length = 1110

 Score =  299 bits (766), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 150/265 (56%), Positives = 188/265 (70%), Gaps = 32/265 (12%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYP HNQ+PRNTYQCAMGKQAMG I  NQ+ RID+ +YNLVY QRP+V+++TI +  
Sbjct: 674  GLIPYPDHNQSPRNTYQCAMGKQAMGTIAMNQRERIDSCLYNLVYPQRPLVKTRTIELIG 733

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQ---YPNQT 1029
            F +LPAGQNAT+AVMSYSGYDIEDAL++NKAS+DRG+GRCLVYRN K  L++        
Sbjct: 734  FEQLPAGQNATVAVMSYSGYDIEDALVLNKASVDRGYGRCLVYRNEKTQLQRRGTLVETI 793

Query: 1030 HDRILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPE 1089
             +RI GP L+A + + +     LD DGIVAPGE++ +R   + KS P      I + T  
Sbjct: 794  EERIDGPALDAKSGEKIRADECLDMDGIVAPGERVKDRAPTMAKSQP------IHIGT-- 845

Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAF--LIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
                            E+V++   SEDA   ++K+  RQTRRPE+GDKFSSRHGQKGV G
Sbjct: 846  ----------------ERVMI---SEDATWRMVKLSYRQTRRPELGDKFSSRHGQKGVTG 886

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHG 1172
            LIV QE+MPFNE G+CPD+IMNPHG
Sbjct: 887  LIVPQENMPFNEIGMCPDVIMNPHG 911



 Score =  226 bits (577), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 108/177 (61%), Positives = 135/177 (76%), Gaps = 5/177 (2%)

Query: 1198 EKVLVSSNSEDAF--LIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGIC 1255
            E+V++S   EDA   ++K+  RQTRRPE+GDKFSSRHGQKGV GLIV QE+MPFNE G+C
Sbjct: 846  ERVMIS---EDATWRMVKLSYRQTRRPELGDKFSSRHGQKGVTGLIVPQENMPFNEIGMC 902

Query: 1256 PDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQ 1315
            PD+IMNPHGYPSRMTVGKL+E +  KAG + G +  GTAFGG    ++ + ++ +G+NY 
Sbjct: 903  PDVIMNPHGYPSRMTVGKLMECIGSKAGALSGKFHYGTAFGGNTTEEMAQTMLDYGFNYY 962

Query: 1316 GKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
            GKD+  SG TGE LEAYI+ GP+YYQKL+HMV DK+HAR+ G    LTRQP   R K
Sbjct: 963  GKDLLMSGETGEPLEAYIFMGPIYYQKLRHMVMDKMHARATGKVHNLTRQPLEGRAK 1019



 Score =  186 bits (473), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 99/224 (44%), Positives = 147/224 (65%), Gaps = 11/224 (4%)

Query: 124 KEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKA 183
           K +G++K   D  DY+ N    K +Q   ++ S +    +  + D       K + K  A
Sbjct: 345 KRRGMIKA--DDRDYYGN----KRIQLAGDLISLLFEEHFKNFNDELRRTIGKKLEKKTA 398

Query: 184 AQFDIVNHMR--QDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGL--GMMT 239
              D+++ M+  Q+ IT A+ AAIQTGNW ++RFKM+R+G+T++L+R+S+IS +  G MT
Sbjct: 399 QVVDVISSMKSLQNKITLAMEAAIQTGNWNLKRFKMDRKGITEILNRMSFISIILVGTMT 458

Query: 240 RINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLK 299
           RI   FEKT KV+GPR+LQGSQWGMLCPSDTPEG  CGLVKN+AL++H+TT  D+K + +
Sbjct: 459 RIKGHFEKTMKVTGPRALQGSQWGMLCPSDTPEGAQCGLVKNMALLSHVTTFEDDKPIHR 518

Query: 300 IMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAGITCHHKEVCK 343
           ++ N+G+E  +  +G +L     YLVF+NG L G T + K + +
Sbjct: 519 LLINLGVEETSTLSGYDLHGAN-YLVFLNGALVGATRNPKSLTR 561



 Score =  154 bits (389), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 80/150 (53%), Positives = 100/150 (66%), Gaps = 16/150 (10%)

Query: 675 QPRPTFLNMHQFL-GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAP 733
           +P+ T  +++  L G  +F DF+  G IEYLDVNE N + IAV E  I     THLEI P
Sbjct: 607 RPKVTQKHINALLEGRVKFPDFVKNGLIEYLDVNEENSALIAVYERDITKK-HTHLEIEP 665

Query: 734 FTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDT 793
           F LLGVCAG              L+PYP HNQ+PRNTYQCAMGKQAMG I  NQ+ RID+
Sbjct: 666 FALLGVCAG--------------LIPYPDHNQSPRNTYQCAMGKQAMGTIAMNQRERIDS 711

Query: 794 LMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
            +YNLVY QRP+V+++TI +  F +LPAG+
Sbjct: 712 CLYNLVYPQRPLVKTRTIELIGFEQLPAGQ 741



 Score = 79.3 bits (194), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/74 (52%), Positives = 50/74 (67%), Gaps = 1/74 (1%)

Query: 338 HKEVCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPI 397
           H  V  P++E     +   TPHECRLRD+TYSAPI VD+ Y R +Q      LVIGRMPI
Sbjct: 88  HIYVDPPDVEYGMR-SEAITPHECRLRDMTYSAPIKVDVTYVRDNQIRKARGLVIGRMPI 146

Query: 398 MLQSSKCVLRNKTE 411
           ML+S++CVL N ++
Sbjct: 147 MLRSARCVLANMSQ 160



 Score = 65.1 bits (157), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 50/77 (64%), Gaps = 2/77 (2%)

Query: 99  VTDETSKLKDSPEIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDV 158
           + D  S  +   E+++KWKLV +FL+ +GLVK H+DSF+Y +   ++K+++ANA   +DV
Sbjct: 21  INDYVSSYESISEVQEKWKLVPAFLETRGLVKQHLDSFNYLLTQGLQKIIKANAR--TDV 78

Query: 159 DPLFYLKYLDIHVGIAD 175
           D  F+  Y  I+V   D
Sbjct: 79  DQNFFWNYDHIYVDPPD 95



 Score = 63.9 bits (154), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/107 (37%), Positives = 61/107 (57%), Gaps = 25/107 (23%)

Query: 432 SPLLSCKKLRQKRFQTYKKTPVD---DARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRR 488
           +P++S  ++ Q RFQ   +TP +   +  ++L ST + ++P     +K + M  A     
Sbjct: 304 NPIVSRSQM-QSRFQV--RTPRNREQEVHNWLVSTLLVNVPYC---YKRRGMIKA----- 352

Query: 489 MVLALSDPDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELKET 535
                      DDRDYYGNKR++LAG L+SL+FE+ FK FN EL+ T
Sbjct: 353 -----------DDRDYYGNKRIQLAGDLISLLFEEHFKNFNDELRRT 388


>gi|225464023|ref|XP_002265454.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Vitis
            vinifera]
          Length = 1142

 Score =  299 bits (766), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 144/267 (53%), Positives = 186/267 (69%), Gaps = 9/267 (3%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+P+PHHNQ+PRNTYQCAMGKQAMG I YNQ  R+D+L+Y LVY QRP++ ++TI +  
Sbjct: 671  GLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDSLLYLLVYPQRPLLTTRTIELVG 730

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KL AGQNAT+AVMSYSGYDIEDA++MNK+SLDRGFGRC+V +    V ++Y N   DR
Sbjct: 731  YDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKKFSAVNQRYENNASDR 790

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTIS----VSAISMATP 1088
            I+ PL          R + LD DG+ APGE I    + +NK  P I+    +S + +   
Sbjct: 791  IVRPL---KVGHDAERMQILDDDGLAAPGEIIKPNDIYINKESPIITKGPLISPVGLPDS 847

Query: 1089 EYKEVPVSYKG--SVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVI 1146
             YK    ++KG     S +++V + S+      IK L+R TRRPE+GDKFSSRHGQKGV 
Sbjct: 848  AYKPSRQTFKGPEGEASVVDRVALCSDKNSNLCIKFLIRHTRRPEVGDKFSSRHGQKGVC 907

Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G I++QED PF+E GICPD+IMNPHG 
Sbjct: 908  GTIIQQEDFPFSERGICPDLIMNPHGF 934



 Score =  241 bits (615), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 122/235 (51%), Positives = 161/235 (68%), Gaps = 13/235 (5%)

Query: 1147 GLIVEQEDMPFNESG--ICPDIIMNPHGLKGCDRITEYKEVPVSYKG--SVPSYLEKVLV 1202
            G I++  D+  N+    I    +++P GL      + YK    ++KG     S +++V +
Sbjct: 816  GEIIKPNDIYINKESPIITKGPLISPVGLPD----SAYKPSRQTFKGPEGEASVVDRVAL 871

Query: 1203 SSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNP 1262
             S+      IK L+R TRRPE+GDKFSSRHGQKGV G I++QED PF+E GICPD+IMNP
Sbjct: 872  CSDKNSNLCIKFLIRHTRRPEVGDKFSSRHGQKGVCGTIIQQEDFPFSERGICPDLIMNP 931

Query: 1263 HGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFG-----GTKLVDVQEELIRHGYNYQGK 1317
            HG+PSRMTVGK+IELL GKAG+  G +  G+AFG       K+  + + L++HG++Y GK
Sbjct: 932  HGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADKVETISKTLVKHGFSYSGK 991

Query: 1318 DIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
            D  YSGITG  L+AYI+ GP+YYQKLKHMV DK+HAR  GPRV+LTRQPT  R +
Sbjct: 992  DFIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRAR 1046



 Score =  193 bits (491), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 94/209 (44%), Positives = 140/209 (66%), Gaps = 6/209 (2%)

Query: 128 LVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFD 187
           L K  +D  DY  N  ++   Q  + ++ D   LF     ++   I   +    ++++FD
Sbjct: 343 LNKDAMDDKDYVGNKRLELSGQLISLLFED---LFKTMISEVKKTIDAILAKPSRSSRFD 399

Query: 188 IVNHMR---QDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQ 244
               +R   +D+IT  L   + TGNW ++RF+M R+G++QV++RLSYI  LG MT+I+ Q
Sbjct: 400 FSQCLRFIVRDSITVGLERTLSTGNWDVKRFRMHRKGMSQVVARLSYIGSLGHMTKISPQ 459

Query: 245 FEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNI 304
           FEK+RKVSGPR+LQ SQWGMLCP DTPEGEACGLVKNLALMTH+TT+ +E  ++ + Y++
Sbjct: 460 FEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEESPLISLCYSL 519

Query: 305 GIEHIAMFNGEELSSPGVYLVFVNGILAG 333
           G+E + + +GEEL +P  +L+  NG++ G
Sbjct: 520 GVEDLELLSGEELHTPNSFLIIFNGLILG 548



 Score =  158 bits (400), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 76/136 (55%), Positives = 98/136 (72%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G + FDDFL +G IEYLDVNE N++ IA+ E+  +P  TTH+EI PFT+LGVCAG     
Sbjct: 618 GVRTFDDFLRDGLIEYLDVNEENNALIALYEADAKPE-TTHIEIEPFTILGVCAG----- 671

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+P+PHHNQ+PRNTYQCAMGKQAMG I YNQ  R+D+L+Y LVY QRP++ 
Sbjct: 672 ---------LIPFPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDSLLYLLVYPQRPLLT 722

Query: 808 SKTIRITNFHKLPAGK 823
           ++TI +  + KL AG+
Sbjct: 723 TRTIELVGYDKLGAGQ 738



 Score = 87.8 bits (216), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 41/77 (53%), Positives = 58/77 (75%)

Query: 459 FLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGSLLS 518
            L  T IA++PV    F+ K +Y+AVM+RRM+ A+ + D +DD+DY GNKRLEL+G L+S
Sbjct: 308 ILRDTFIANVPVRQNNFRPKCLYVAVMLRRMMDAILNKDAMDDKDYVGNKRLELSGQLIS 367

Query: 519 LMFEDVFKRFNSELKET 535
           L+FED+FK   SE+K+T
Sbjct: 368 LLFEDLFKTMISEVKKT 384



 Score = 72.0 bits (175), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/112 (41%), Positives = 60/112 (53%), Gaps = 17/112 (15%)

Query: 306 IEHIAMFNGEELSS--PGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHECRL 363
           I+ I   N   +SS  P +YL F +     +      +    I E  N      PH CRL
Sbjct: 50  IKKIVRANDRIVSSVDPSIYLRFKD-----VRIGEPSITVDGISEKLN------PHTCRL 98

Query: 364 RDLTYSAPITVDIEYTRGSQ----RVVRSDLVIGRMPIMLQSSKCVLRNKTE 411
            D+TY+API V+IEY  GS     RV ++D+VIGRMPIML+S  CVL  K E
Sbjct: 99  SDMTYAAPILVNIEYITGSHVQKTRVEKNDVVIGRMPIMLRSCCCVLYKKDE 150



 Score = 70.5 bits (171), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 30/59 (50%), Positives = 44/59 (74%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           DK+ L+  FLK +GLVK H+DSF+YF+  +IKK+++AN  I S VDP  YL++ D+ +G
Sbjct: 20  DKFPLLPEFLKVRGLVKQHLDSFNYFVKTDIKKIVRANDRIVSSVDPSIYLRFKDVRIG 78


>gi|66356606|ref|XP_625481.1| DNA-directed RNA polymerase beta subunit [Cryptosporidium parvum Iowa
            II]
 gi|46226475|gb|EAK87469.1| DNA-directed RNA polymerase beta subunit [Cryptosporidium parvum Iowa
            II]
          Length = 1287

 Score =  298 bits (762), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 135/270 (50%), Positives = 194/270 (71%), Gaps = 9/270 (3%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYP+HNQ+PRNTYQCAMGKQ MG +G+NQ  R D+++Y LVY Q+P+ +++TI + N
Sbjct: 821  GLIPYPNHNQSPRNTYQCAMGKQVMGSVGFNQFLRCDSVLYLLVYPQKPLCKTRTIEMIN 880

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F +LPAGQN+++AVMS++GYDIEDA++MNKAS+DRGF RC V +     L++ PN   +R
Sbjct: 881  FEQLPAGQNSSVAVMSFAGYDIEDAIVMNKASVDRGFARCFVMKRQTIELQKLPNGLSER 940

Query: 1033 ILGPLL----EADTRKPVYRHRA-LDQDGIVAPGEQICERQVLVNKSMPTISVSAI---- 1083
            ++ P+         R+  +++ + LD DG+   G Q+ E  ++VNK  P  +   +    
Sbjct: 941  VVRPISVGSGNTGNRRFSFKNDSILDNDGVCNVGVQVSEDDIIVNKMSPINTREYVGDPS 1000

Query: 1084 SMATPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1143
                 EYK  PV YKG   SY+++V+++ N++   + K++ RQTRRPE+GDKFSSRHGQK
Sbjct: 1001 QFDLSEYKPSPVKYKGPTSSYIDRVILTENADGNQIYKVITRQTRRPELGDKFSSRHGQK 1060

Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            GV+GLI+ QED+PF+E+G CPD+IMNPHG 
Sbjct: 1061 GVVGLIISQEDLPFSETGWCPDLIMNPHGF 1090



 Score =  272 bits (695), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 120/194 (61%), Positives = 159/194 (81%)

Query: 1179 ITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVI 1238
            ++EYK  PV YKG   SY+++V+++ N++   + K++ RQTRRPE+GDKFSSRHGQKGV+
Sbjct: 1004 LSEYKPSPVKYKGPTSSYIDRVILTENADGNQIYKVITRQTRRPELGDKFSSRHGQKGVV 1063

Query: 1239 GLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGT 1298
            GLI+ QED+PF+E+G CPD+IMNPHG+PSRMTVGKL+EL++ KA +++GNY+ GTAFGGT
Sbjct: 1064 GLIISQEDLPFSETGWCPDLIMNPHGFPSRMTVGKLLELISSKASVLDGNYRYGTAFGGT 1123

Query: 1299 KLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGP 1358
             L +  + L+ HG++Y GK+   SG TGEA+EAYI+ GP+YYQKLKHMV DK+HAR RGP
Sbjct: 1124 PLEESAKCLVEHGFHYSGKEYLTSGTTGEAIEAYIFVGPIYYQKLKHMVLDKMHARGRGP 1183

Query: 1359 RVVLTRQPTGRRWK 1372
            R +LTRQPT  R K
Sbjct: 1184 RQILTRQPTEGRSK 1197



 Score =  167 bits (424), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 87/181 (48%), Positives = 121/181 (66%), Gaps = 27/181 (14%)

Query: 187 DIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFE 246
           D   ++  D IT  +  A+ TGNW+I+RF+MER G+TQVL+R SYI+ LG+MTR++SQFE
Sbjct: 531 DCFRNLPTDIITRGMQTALSTGNWSIKRFRMERSGMTQVLTRFSYIASLGIMTRVDSQFE 590

Query: 247 KTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGI 306
           K RKVSGPR+LQ SQWG+LCP DTPEGE+CGLVKNLAL THITT++  + +  +++ +G+
Sbjct: 591 KARKVSGPRALQPSQWGILCPCDTPEGESCGLVKNLALTTHITTDHCPQYLTSLLFTLGV 650

Query: 307 EHIAM-----FN---GEELSSPGV-------------YLVFVNGILAGITCHHKEVCKPE 345
           + I+      FN    E+LS+  +             Y V +NG L G+   H+   KPE
Sbjct: 651 QDISSCSYLDFNTKQSEKLSNEDLKNESSGKNNVKKHYYVSINGSLLGV---HR---KPE 704

Query: 346 I 346
           +
Sbjct: 705 L 705



 Score =  135 bits (339), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 63/132 (47%), Positives = 91/132 (68%), Gaps = 15/132 (11%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKR 751
           F DF+ +G +E++DVNE N+  IA+ +  +    TTHLEI P ++LGV +G         
Sbjct: 772 FSDFISQGILEWIDVNEENNLLIALRDENL-TNETTHLEIDPLSILGVVSG--------- 821

Query: 752 FHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTI 811
                L+PYP+HNQ+PRNTYQCAMGKQ MG +G+NQ  R D+++Y LVY Q+P+ +++TI
Sbjct: 822 -----LIPYPNHNQSPRNTYQCAMGKQVMGSVGFNQFLRCDSVLYLLVYPQKPLCKTRTI 876

Query: 812 RITNFHKLPAGK 823
            + NF +LPAG+
Sbjct: 877 EMINFEQLPAGQ 888



 Score = 83.6 bits (205), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 37/79 (46%), Positives = 56/79 (70%)

Query: 451 TPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRL 510
           T +DD  + L+   ++HI  I      KA++L +M +R++ A  D  +LDD+DYYGNKR+
Sbjct: 417 TSIDDVLETLNRVLLSHIGTIYTDLHPKALFLCLMAKRVLDASEDNSLLDDKDYYGNKRI 476

Query: 511 ELAGSLLSLMFEDVFKRFN 529
           ELAG L+S++FED+FKRF+
Sbjct: 477 ELAGQLISILFEDLFKRFS 495



 Score = 78.2 bits (191), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 36/70 (51%), Positives = 53/70 (75%), Gaps = 2/70 (2%)

Query: 106 LKDSPEIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANAN--IYSDVDPLFY 163
           LK    ++DKW+L+  FLK +GLVK HIDS++YF+  EI+ +++ANAN  I SDVDP F+
Sbjct: 101 LKPVNTMKDKWRLLPYFLKTEGLVKHHIDSYNYFVTTEIQSIVRANANRMIRSDVDPSFF 160

Query: 164 LKYLDIHVGI 173
           +++LD  VG+
Sbjct: 161 IEFLDARVGM 170



 Score = 70.9 bits (172), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 49/70 (70%), Gaps = 1/70 (1%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQ 400
           V  P++EE+   T   TP  CR+RD+TY+API VD++Y RG+  V + ++ IGR+P+ML+
Sbjct: 168 VGMPKLEENM-ITVDLTPMMCRMRDITYAAPIFVDVDYVRGNTVVRKKNVEIGRIPVMLR 226

Query: 401 SSKCVLRNKT 410
           S  C+L  KT
Sbjct: 227 SKVCILHGKT 236


>gi|290990263|ref|XP_002677756.1| predicted protein [Naegleria gruberi]
 gi|284091365|gb|EFC45012.1| predicted protein [Naegleria gruberi]
          Length = 1120

 Score =  297 bits (760), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 153/280 (54%), Positives = 193/280 (68%), Gaps = 21/280 (7%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GLVPYPHHNQ+PRNTYQCAMGKQAMG I YNQ NR+DTL+  +VY Q+PMV++KTI +  
Sbjct: 644  GLVPYPHHNQSPRNTYQCAMGKQAMGAIAYNQFNRLDTLLLLMVYPQKPMVKTKTIELIQ 703

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KL  GQNA+IAVMSYSGYDIEDA+++NKAS+DRG+GRC+  +     LK+Y N   D 
Sbjct: 704  FEKLSGGQNASIAVMSYSGYDIEDAVVVNKASIDRGYGRCIYLKKYVTELKRYHNGVED- 762

Query: 1033 ILGPLLEADTRKPVYRHRA-----LDQDGIVAPGEQICERQVLVNK-------------S 1074
            +L P   A   K + + R      LD DG+ A GE+I    + +N+             +
Sbjct: 763  VLQPPPNAQQAKDMDQKRLKSYQRLDFDGMCAVGERIYPNDMYINRFVAQNTQDNLLGMN 822

Query: 1075 MPTISVSAISMATPEYKEVPVSYKGSVPSYLEKVLVSSNSE-DAFLIKMLLRQTRRPEIG 1133
             PT S S+   A   YK  P+ YKG    Y+++VL++ N +   + +K LLRQTRRPE+G
Sbjct: 823  TPTPS-SSNGAAANTYKPSPIFYKGPCSVYVDQVLITPNYDRGGYALKYLLRQTRRPELG 881

Query: 1134 DKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            DKFSSRHGQKGV GLIV+Q+DMPFNE GICPD+IMNPHG 
Sbjct: 882  DKFSSRHGQKGVCGLIVDQQDMPFNEQGICPDMIMNPHGF 921



 Score =  262 bits (669), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 121/192 (63%), Positives = 152/192 (79%), Gaps = 1/192 (0%)

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSE-DAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1240
            YK  P+ YKG    Y+++VL++ N +   + +K LLRQTRRPE+GDKFSSRHGQKGV GL
Sbjct: 837  YKPSPIFYKGPCSVYVDQVLITPNYDRGGYALKYLLRQTRRPELGDKFSSRHGQKGVCGL 896

Query: 1241 IVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKL 1300
            IV+Q+DMPFNE GICPD+IMNPHG+PSRMTVGK+IEL+ GK+G++ G    GTAFGG K+
Sbjct: 897  IVDQQDMPFNEQGICPDMIMNPHGFPSRMTVGKMIELICGKSGVLNGKQGYGTAFGGDKV 956

Query: 1301 VDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRV 1360
             D+ + LIRHG++Y GKD+  SGITGE +  YIY GPV+YQ+LKHMV DK+HARS+GP  
Sbjct: 957  EDIGKGLIRHGFSYSGKDLLTSGITGETMSCYIYFGPVFYQRLKHMVLDKMHARSKGPVR 1016

Query: 1361 VLTRQPTGRRWK 1372
            +LTRQP   R K
Sbjct: 1017 ILTRQPLEGRSK 1028



 Score =  208 bits (530), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 102/206 (49%), Positives = 141/206 (68%), Gaps = 3/206 (1%)

Query: 132 HIDSFDYFINVEIKKLMQANANIYSDVDPLF---YLKYLDIHVGIADKIIPKIKAAQFDI 188
           +ID  DY+ N  ++   Q  + ++ D+   F     K L+   G   +            
Sbjct: 317 NIDDKDYYGNKRLEMAGQLLSLLFEDLFKKFNDEIKKTLEKKTGRRSRRATSTPTEDISS 376

Query: 189 VNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKT 248
           + +     IT  L  +I +GNW ++RFKMER GVT VLSRLS+I+ LGMMTRI+SQFEKT
Sbjct: 377 IFNANSSKITEGLKNSISSGNWNVQRFKMERAGVTHVLSRLSFIAALGMMTRISSQFEKT 436

Query: 249 RKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEH 308
           RKVSGPR+LQ SQWG+LCPSDTPEGE CGLVKNLAL+TH+TT+++E+ ++++ YNIG+E 
Sbjct: 437 RKVSGPRALQPSQWGLLCPSDTPEGEGCGLVKNLALLTHVTTDDEEEPIIRLAYNIGVED 496

Query: 309 IAMFNGEELSSPGVYLVFVNGILAGI 334
           I + +GEEL+ P  Y+VF+NG++ GI
Sbjct: 497 INLISGEELNHPSSYVVFLNGLILGI 522



 Score =  162 bits (409), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 80/136 (58%), Positives = 95/136 (69%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G + +DDFL EG IEYLDVNE N+S+I   E  I+   TTH EI PFT+LGVCAG     
Sbjct: 591 GIRTWDDFLKEGLIEYLDVNEENNSNIVFREEDIKLE-TTHFEIEPFTILGVCAG----- 644

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    LVPYPHHNQ+PRNTYQCAMGKQAMG I YNQ NR+DTL+  +VY Q+PMV+
Sbjct: 645 ---------LVPYPHHNQSPRNTYQCAMGKQAMGAIAYNQFNRLDTLLLLMVYPQKPMVK 695

Query: 808 SKTIRITNFHKLPAGK 823
           +KTI +  F KL  G+
Sbjct: 696 TKTIELIQFEKLSGGQ 711



 Score =  108 bits (269), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 47/86 (54%), Positives = 67/86 (77%)

Query: 450 KTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKR 509
           K  +++ R+ LS+  + HIPV    +KMK +YLA+M++RM+ AL D   +DD+DYYGNKR
Sbjct: 269 KPKMEETREILSNIILCHIPVYKFNYKMKIVYLAIMVKRMIDALHDSANIDDKDYYGNKR 328

Query: 510 LELAGSLLSLMFEDVFKRFNSELKET 535
           LE+AG LLSL+FED+FK+FN E+K+T
Sbjct: 329 LEMAGQLLSLLFEDLFKKFNDEIKKT 354



 Score = 67.8 bits (164), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/74 (48%), Positives = 50/74 (67%), Gaps = 4/74 (5%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTR--GSQRVVR-SDLVIGRMPI 397
           + KP ++E  + T + TP  CRLRDLTYSA I V +EY +  G++ +++  DL IGRMPI
Sbjct: 49  IAKPRLDEGTD-TIELTPQLCRLRDLTYSADIIVSVEYPQIVGNETLIKHEDLSIGRMPI 107

Query: 398 MLQSSKCVLRNKTE 411
           MLQ  +CVL  K +
Sbjct: 108 MLQCDRCVLCGKDD 121



 Score = 65.5 bits (158), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/50 (58%), Positives = 39/50 (78%)

Query: 123 LKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           +K KGL + HIDSF+YFINV+IKK++QAN+ I  D D  FY+KY DI++ 
Sbjct: 1   MKVKGLFRQHIDSFNYFINVDIKKIVQANSMITPDTDDKFYIKYNDIYIA 50


>gi|449300576|gb|EMC96588.1| hypothetical protein BAUCODRAFT_33950 [Baudoinia compniacensis UAMH
            10762]
          Length = 1214

 Score =  296 bits (759), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 146/265 (55%), Positives = 185/265 (69%), Gaps = 14/265 (5%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ  RIDTL+Y +VY Q+PMV ++ I +  
Sbjct: 759  GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFTRIDTLLYLMVYPQKPMVSTRAIELVK 818

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNA +AVMSYSGYDIEDAL++NKAS DRGFGRC V++     LK Y N   DR
Sbjct: 819  YDKLPAGQNAIVAVMSYSGYDIEDALVLNKASCDRGFGRCQVFKKINVQLKTYGNGATDR 878

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMP---TISVSAIS-MATP 1088
            + G     D   P  +H  L +DGI+  G Q+      + K  P   ++SV+A + +  P
Sbjct: 879  VTG----RDDANP--KHVKLGKDGIIEAGMQLAAGDTYMLKEKPLQQSVSVAASAQIWAP 932

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
            E+    +SYK   P Y +KV+V +   +  + K+  RQTRRPE+GDKFSSRHGQKGV+G+
Sbjct: 933  EH----MSYKLPDPCYADKVMVGTTESNHTIFKIQTRQTRRPEVGDKFSSRHGQKGVVGI 988

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            I EQ DMPF++SGI PDIIMNPHG 
Sbjct: 989  IAEQADMPFSDSGITPDIIMNPHGF 1013



 Score =  261 bits (668), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 118/186 (63%), Positives = 151/186 (81%)

Query: 1187 VSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQED 1246
            +SYK   P Y +KV+V +   +  + K+  RQTRRPE+GDKFSSRHGQKGV+G+I EQ D
Sbjct: 935  MSYKLPDPCYADKVMVGTTESNHTIFKIQTRQTRRPEVGDKFSSRHGQKGVVGIIAEQAD 994

Query: 1247 MPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEE 1306
            MPF++SGI PDIIMNPHG+PSRMTVGK++EL+AGKAG+++G  + GTAFGG+K+ ++  E
Sbjct: 995  MPFSDSGITPDIIMNPHGFPSRMTVGKMLELVAGKAGVLKGTQEYGTAFGGSKVEEMGNE 1054

Query: 1307 LIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQP 1366
            LIR G++Y GKD   SGITGE+L AY++ GP+YYQKLKHMVQDK+HARS GPR +LTRQP
Sbjct: 1055 LIRQGFSYSGKDCVTSGITGESLPAYVFFGPIYYQKLKHMVQDKMHARSTGPRAILTRQP 1114

Query: 1367 TGRRWK 1372
            T  R +
Sbjct: 1115 TEGRSR 1120



 Score =  201 bits (510), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 112/230 (48%), Positives = 148/230 (64%), Gaps = 11/230 (4%)

Query: 118 LVLSFLKEKGLVKPH----IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGI 173
           L ++F+  + L+  H    +D  DY  N  ++   Q  A ++ D   LF      I + +
Sbjct: 418 LYIAFMTRRVLMAMHDPKLVDDRDYVGNKRLELAGQMLALLFED---LFKEVTKQIKLSM 474

Query: 174 ADKIIPKIKAAQ-FDI--VNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLS 230
            DKI+ K    Q FD   +  + +  IT  L  AI TGNW ++RF+M+R GVT VLSRLS
Sbjct: 475 -DKILKKHNPTQEFDPERLIDLSESRITTGLERAISTGNWALKRFRMDRAGVTHVLSRLS 533

Query: 231 YISGLGMMTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITT 290
           YIS LGMMTRI SQFEKTRKVSGPR+LQ SQ+GMLC SDTPEGEACGLVKNLALMTHITT
Sbjct: 534 YISALGMMTRITSQFEKTRKVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITT 593

Query: 291 ENDEKNMLKIMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAGITCHHKE 340
            +DE  + ++ +++G E +   +G E+ S G Y++FVNG    +T   K+
Sbjct: 594 SDDEAPIRRMAFSLGAEDVTSASGTEVYSAGAYIIFVNGTPVALTRQPKQ 643



 Score =  160 bits (405), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 79/135 (58%), Positives = 93/135 (68%), Gaps = 15/135 (11%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKR 751
           FDD L  G +EYLDVNE NDS+IAV E GI    TTHLEI PFT+LG  AG         
Sbjct: 710 FDDALSRGIVEYLDVNEENDSNIAVYEDGITQH-TTHLEIEPFTILGAVAG--------- 759

Query: 752 FHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTI 811
                L+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ  RIDTL+Y +VY Q+PMV ++ I
Sbjct: 760 -----LIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFTRIDTLLYLMVYPQKPMVSTRAI 814

Query: 812 RITNFHKLPAGKCQI 826
            +  + KLPAG+  I
Sbjct: 815 ELVKYDKLPAGQNAI 829



 Score = 99.8 bits (247), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 106/223 (47%), Gaps = 20/223 (8%)

Query: 315 EELSSPGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHECRLRDLTYSAPITV 374
           E+LS   V +    GI+      H    K +             H      LT   P+ +
Sbjct: 265 EQLSKNRVIVESAKGIIQASVTSHTANVKTKTYVLLKKGLLVLKHNS----LTEDIPVAI 320

Query: 375 DIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKTEYTSSSRRASTSSVTMHSQRTSPL 434
                     V+R+  V     I+L ++      + E+  +  +A+   V    Q    +
Sbjct: 321 ----------VLRAMGVQSDHEILLLAAGNDATYQDEFAPNLEQAALEGVFTQEQALDYI 370

Query: 435 LSCKKLRQKRFQTY----KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMV 490
            S  + +  RF T+     K+P   A D L+ T I H+ V  + F+ KA+Y+A M RR++
Sbjct: 371 AS--RFKPDRFPTFAGKASKSPKQQALDKLAGTIIPHVEVEGLNFRPKALYIAFMTRRVL 428

Query: 491 LALSDPDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
           +A+ DP ++DDRDY GNKRLELAG +L+L+FED+FK    ++K
Sbjct: 429 MAMHDPKLVDDRDYVGNKRLELAGQMLALLFEDLFKEVTKQIK 471



 Score = 68.2 bits (165), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/61 (49%), Positives = 45/61 (73%)

Query: 351 NYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
           N+    TP+ECRLRD+TY+API VD  ++  +    +++ +IGRMP+ML+SSKCVL  ++
Sbjct: 175 NHESPVTPNECRLRDMTYAAPIFVDYVWSSSTGLRRKTNKMIGRMPMMLRSSKCVLSGRS 234

Query: 411 E 411
           E
Sbjct: 235 E 235



 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 43/60 (71%)

Query: 113 RDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           RDKW L+ +FL+ KGLVK HIDS++YF +V ++++++AN  I SD     ++++  I VG
Sbjct: 104 RDKWNLLPAFLRVKGLVKQHIDSYNYFTDVALQEIVRANRYIRSDAQKDRFIQFTGIRVG 163


>gi|79529842|ref|NP_199327.4| DNA-directed RNA polymerase III subunit C2 [Arabidopsis thaliana]
 gi|332007826|gb|AED95209.1| DNA-directed RNA polymerase III subunit C2 [Arabidopsis thaliana]
          Length = 1161

 Score =  296 bits (759), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 141/265 (53%), Positives = 189/265 (71%), Gaps = 7/265 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG I YNQ NR+DTL+Y LVY QRP++ ++TI +  
Sbjct: 692  GLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLNRMDTLLYLLVYPQRPLLTTRTIELVG 751

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KL AGQNAT+AVMS+SGYDIEDA++MNK+SLDRGFGRC+V +    + ++Y N T DR
Sbjct: 752  YDKLGAGQNATVAVMSFSGYDIEDAIVMNKSSLDRGFGRCIVMKKIVAMSQKYDNCTADR 811

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAIS--MATPEY 1090
            IL P     T     + + LD DG+  PGE I    + +NK +P  +V+  +  ++  +Y
Sbjct: 812  ILIP---QRTGPDAEKMQILDDDGLATPGEIIRPNDIYINKQVPVDTVTKFTSALSDSQY 868

Query: 1091 KEVPVSYKG--SVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
            +     +KG       +++V + S+ +    IK ++R TRRPE+GDKFSSRHGQKGV G+
Sbjct: 869  RPAREYFKGPEGETQVVDRVALCSDKKGQLCIKYIIRHTRRPELGDKFSSRHGQKGVCGI 928

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            I++QED PF+E GICPD+IMNPHG 
Sbjct: 929  IIQQEDFPFSELGICPDLIMNPHGF 953



 Score =  231 bits (589), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 105/181 (58%), Positives = 138/181 (76%), Gaps = 5/181 (2%)

Query: 1197 LEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICP 1256
            +++V + S+ +    IK ++R TRRPE+GDKFSSRHGQKGV G+I++QED PF+E GICP
Sbjct: 885  VDRVALCSDKKGQLCIKYIIRHTRRPELGDKFSSRHGQKGVCGIIIQQEDFPFSELGICP 944

Query: 1257 DIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFG-----GTKLVDVQEELIRHG 1311
            D+IMNPHG+PSRMTVGK+IELL  KAG+  G +  G+AFG       K+  +   L+  G
Sbjct: 945  DLIMNPHGFPSRMTVGKMIELLGSKAGVSCGRFHYGSAFGERSGHADKVETISATLVEKG 1004

Query: 1312 YNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRW 1371
            ++Y GKD+ YSGI+GE +EAYI+ GP+YYQKLKHMV DK+HAR  GPRV++TRQPT  + 
Sbjct: 1005 FSYSGKDLLYSGISGEPVEAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMMTRQPTEGKS 1064

Query: 1372 K 1372
            K
Sbjct: 1065 K 1065



 Score =  184 bits (468), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 95/220 (43%), Positives = 145/220 (65%), Gaps = 8/220 (3%)

Query: 118 LVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKI 177
           ++L  + E  L K  +D  DY  N  ++   Q  + ++ D+    +   L   +   D I
Sbjct: 343 VMLRRMIEAMLNKDAMDDKDYVGNKRLELSGQLISLLFEDL----FKTMLSEAIKNVDHI 398

Query: 178 IPK-IKAAQFDIVNHMRQDT---ITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYIS 233
           + K I+A++FD    + +D+   I+  L   + TGN+ I+RF+M R+G+TQVL+RLS+I 
Sbjct: 399 LNKPIRASRFDFSQCLNKDSRYSISLGLERTLSTGNFDIKRFRMHRKGMTQVLTRLSFIG 458

Query: 234 GLGMMTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTEND 293
            +G +T+I+ QFEK+RKVSGPRSLQ SQWGMLCP DTPEGE+CGLVKNLALMTH+TT+ +
Sbjct: 459 SMGFITKISPQFEKSRKVSGPRSLQPSQWGMLCPCDTPEGESCGLVKNLALMTHVTTDEE 518

Query: 294 EKNMLKIMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAG 333
           E  ++ + Y +G+  + + + EEL +P  +LV +NG++ G
Sbjct: 519 EGPLVAMCYKLGVTDLEVLSAEELHTPDSFLVILNGLILG 558



 Score =  153 bits (386), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 78/146 (53%), Positives = 98/146 (67%), Gaps = 24/146 (16%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESG----IRPGV------TTHLEIAPFTLL 737
           G + FDDF+ +G IEYLDVNE N++ IA+ ES     +  G       TTH+EI PFT+L
Sbjct: 628 GVRTFDDFIRDGLIEYLDVNEENNALIALYESDGTTELDEGAEAAKADTTHIEIEPFTIL 687

Query: 738 GVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYN 797
           GV AG              L+PYPHHNQ+PRNTYQCAMGKQAMG I YNQ NR+DTL+Y 
Sbjct: 688 GVVAG--------------LIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLNRMDTLLYL 733

Query: 798 LVYAQRPMVESKTIRITNFHKLPAGK 823
           LVY QRP++ ++TI +  + KL AG+
Sbjct: 734 LVYPQRPLLTTRTIELVGYDKLGAGQ 759



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/87 (47%), Positives = 57/87 (65%), Gaps = 2/87 (2%)

Query: 447 TYKKTPVDDAR--DFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDY 504
           +Y   P  D R    L    +AH+PV +  F+ K  Y+ VM+RRM+ A+ + D +DD+DY
Sbjct: 304 SYGTPPEKDGRALSILRDLFLAHVPVPDNNFRQKCFYVGVMLRRMIEAMLNKDAMDDKDY 363

Query: 505 YGNKRLELAGSLLSLMFEDVFKRFNSE 531
            GNKRLEL+G L+SL+FED+FK   SE
Sbjct: 364 VGNKRLELSGQLISLLFEDLFKTMLSE 390



 Score = 73.9 bits (180), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 45/115 (39%), Positives = 60/115 (52%), Gaps = 17/115 (14%)

Query: 303 NIGIEHIAMFNGEELSS--PGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHE 360
           N+GI  I   N    S+  P +YL F              V +P I  + N      PH 
Sbjct: 58  NVGIHKIVKANSRITSTVDPSIYLRF----------KKVRVGEPSII-NVNTVENINPHM 106

Query: 361 CRLRDLTYSAPITVDIEYTRGSQ----RVVRSDLVIGRMPIMLQSSKCVLRNKTE 411
           CRL D+TY+API V+IEY  GS     +  + +++IGRMPIML+S +CVL  K E
Sbjct: 107 CRLADMTYAAPIFVNIEYVHGSHGNKAKSAKDNVIIGRMPIMLRSCRCVLHGKDE 161



 Score = 72.0 bits (175), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/59 (55%), Positives = 45/59 (76%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           DK++LV  FLK +GLVK H+DSF+YFINV I K+++AN+ I S VDP  YL++  + VG
Sbjct: 31  DKFQLVPEFLKVRGLVKQHLDSFNYFINVGIHKIVKANSRITSTVDPSIYLRFKKVRVG 89


>gi|9759599|dbj|BAB11387.1| DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
          Length = 1194

 Score =  296 bits (758), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 141/265 (53%), Positives = 189/265 (71%), Gaps = 7/265 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG I YNQ NR+DTL+Y LVY QRP++ ++TI +  
Sbjct: 702  GLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLNRMDTLLYLLVYPQRPLLTTRTIELVG 761

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KL AGQNAT+AVMS+SGYDIEDA++MNK+SLDRGFGRC+V +    + ++Y N T DR
Sbjct: 762  YDKLGAGQNATVAVMSFSGYDIEDAIVMNKSSLDRGFGRCIVMKKIVAMSQKYDNCTADR 821

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAIS--MATPEY 1090
            IL P     T     + + LD DG+  PGE I    + +NK +P  +V+  +  ++  +Y
Sbjct: 822  ILIP---QRTGPDAEKMQILDDDGLATPGEIIRPNDIYINKQVPVDTVTKFTSALSDSQY 878

Query: 1091 KEVPVSYKG--SVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
            +     +KG       +++V + S+ +    IK ++R TRRPE+GDKFSSRHGQKGV G+
Sbjct: 879  RPAREYFKGPEGETQVVDRVALCSDKKGQLCIKYIIRHTRRPELGDKFSSRHGQKGVCGI 938

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            I++QED PF+E GICPD+IMNPHG 
Sbjct: 939  IIQQEDFPFSELGICPDLIMNPHGF 963



 Score =  231 bits (589), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 105/181 (58%), Positives = 138/181 (76%), Gaps = 5/181 (2%)

Query: 1197 LEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICP 1256
            +++V + S+ +    IK ++R TRRPE+GDKFSSRHGQKGV G+I++QED PF+E GICP
Sbjct: 895  VDRVALCSDKKGQLCIKYIIRHTRRPELGDKFSSRHGQKGVCGIIIQQEDFPFSELGICP 954

Query: 1257 DIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFG-----GTKLVDVQEELIRHG 1311
            D+IMNPHG+PSRMTVGK+IELL  KAG+  G +  G+AFG       K+  +   L+  G
Sbjct: 955  DLIMNPHGFPSRMTVGKMIELLGSKAGVSCGRFHYGSAFGERSGHADKVETISATLVEKG 1014

Query: 1312 YNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRW 1371
            ++Y GKD+ YSGI+GE +EAYI+ GP+YYQKLKHMV DK+HAR  GPRV++TRQPT  + 
Sbjct: 1015 FSYSGKDLLYSGISGEPVEAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMMTRQPTEGKS 1074

Query: 1372 K 1372
            K
Sbjct: 1075 K 1075



 Score =  184 bits (467), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 95/220 (43%), Positives = 145/220 (65%), Gaps = 8/220 (3%)

Query: 118 LVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKI 177
           ++L  + E  L K  +D  DY  N  ++   Q  + ++ D+    +   L   +   D I
Sbjct: 364 VMLRRMIEAMLNKDAMDDKDYVGNKRLELSGQLISLLFEDL----FKTMLSEAIKNVDHI 419

Query: 178 IPK-IKAAQFDIVNHMRQDT---ITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYIS 233
           + K I+A++FD    + +D+   I+  L   + TGN+ I+RF+M R+G+TQVL+RLS+I 
Sbjct: 420 LNKPIRASRFDFSQCLNKDSRYSISLGLERTLSTGNFDIKRFRMHRKGMTQVLTRLSFIG 479

Query: 234 GLGMMTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTEND 293
            +G +T+I+ QFEK+RKVSGPRSLQ SQWGMLCP DTPEGE+CGLVKNLALMTH+TT+ +
Sbjct: 480 SMGFITKISPQFEKSRKVSGPRSLQPSQWGMLCPCDTPEGESCGLVKNLALMTHVTTDEE 539

Query: 294 EKNMLKIMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAG 333
           E  ++ + Y +G+  + + + EEL +P  +LV +NG++ G
Sbjct: 540 EGPLVAMCYKLGVTDLEVLSAEELHTPDSFLVILNGLILG 579



 Score =  153 bits (386), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 73/136 (53%), Positives = 94/136 (69%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G + FDDF+ +G IEYLDVNE N++ + +     +   TTH+EI PFT+LGV AG     
Sbjct: 649 GVRTFDDFIRDGLIEYLDVNEENNALVCLRAEAAKAD-TTHIEIEPFTILGVVAG----- 702

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQAMG I YNQ NR+DTL+Y LVY QRP++ 
Sbjct: 703 ---------LIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLNRMDTLLYLLVYPQRPLLT 753

Query: 808 SKTIRITNFHKLPAGK 823
           ++TI +  + KL AG+
Sbjct: 754 TRTIELVGYDKLGAGQ 769



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/87 (47%), Positives = 57/87 (65%), Gaps = 2/87 (2%)

Query: 447 TYKKTPVDDAR--DFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDY 504
           +Y   P  D R    L    +AH+PV +  F+ K  Y+ VM+RRM+ A+ + D +DD+DY
Sbjct: 325 SYGTPPEKDGRALSILRDLFLAHVPVPDNNFRQKCFYVGVMLRRMIEAMLNKDAMDDKDY 384

Query: 505 YGNKRLELAGSLLSLMFEDVFKRFNSE 531
            GNKRLEL+G L+SL+FED+FK   SE
Sbjct: 385 VGNKRLELSGQLISLLFEDLFKTMLSE 411



 Score = 73.9 bits (180), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 45/115 (39%), Positives = 60/115 (52%), Gaps = 17/115 (14%)

Query: 303 NIGIEHIAMFNGEELSS--PGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHE 360
           N+GI  I   N    S+  P +YL F              V +P I  + N      PH 
Sbjct: 79  NVGIHKIVKANSRITSTVDPSIYLRF----------KKVRVGEPSII-NVNTVENINPHM 127

Query: 361 CRLRDLTYSAPITVDIEYTRGSQ----RVVRSDLVIGRMPIMLQSSKCVLRNKTE 411
           CRL D+TY+API V+IEY  GS     +  + +++IGRMPIML+S +CVL  K E
Sbjct: 128 CRLADMTYAAPIFVNIEYVHGSHGNKAKSAKDNVIIGRMPIMLRSCRCVLHGKDE 182



 Score = 71.6 bits (174), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/59 (55%), Positives = 45/59 (76%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           DK++LV  FLK +GLVK H+DSF+YFINV I K+++AN+ I S VDP  YL++  + VG
Sbjct: 52  DKFQLVPEFLKVRGLVKQHLDSFNYFINVGIHKIVKANSRITSTVDPSIYLRFKKVRVG 110


>gi|83282218|ref|XP_729674.1| DNA-directed RNA polymerase, subunit beta [Plasmodium yoelii yoelii
            17XNL]
 gi|23488130|gb|EAA21239.1| DNA-directed RNA polymerase, beta subunit, putative [Plasmodium
            yoelii yoelii]
          Length = 1323

 Score =  296 bits (757), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 148/292 (50%), Positives = 195/292 (66%), Gaps = 31/292 (10%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYP+HNQ+PRNTYQCAMGKQA+G IGYNQ  R DTL+Y L+Y Q+P+V+SKTI   N
Sbjct: 835  GLIPYPNHNQSPRNTYQCAMGKQAIGSIGYNQFIRCDTLLYLLIYPQKPLVKSKTIEFIN 894

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNA ++VMS+ GYDIEDA++MNK+S+DRGFGRC+  R     LK+Y N ++D 
Sbjct: 895  FEKLPAGQNAIVSVMSFCGYDIEDAIVMNKSSIDRGFGRCMSLRKHFIELKKYFNGSNDI 954

Query: 1033 IL-GPL----------------------LEADTRKPV----YRHRALDQDGIVAPGEQIC 1065
            +L  PL                       + D RK +     ++ +LD DG+V+ G  + 
Sbjct: 955  VLPSPLSISKQQQMQKKTGKESNDNLANTKEDPRKTINSELKKYHSLDADGVVSIGYLLK 1014

Query: 1066 ERQVLVNKSMPTISVSAI----SMATPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIK 1121
            E QV VNK  P      +     +   ++K   V YK   PSY++K++ + N E   + K
Sbjct: 1015 EGQVYVNKYSPINVKDHVKDMSKLDLNDFKLSEVKYKSVYPSYVDKIIFTENGEGLKIYK 1074

Query: 1122 MLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            +++RQ+R PE+GDKFSSRHGQKGV+GL+V QEDMPF ESGICPD+IMNPHG 
Sbjct: 1075 IIMRQSRLPELGDKFSSRHGQKGVVGLLVNQEDMPFTESGICPDLIMNPHGF 1126



 Score =  264 bits (674), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 117/194 (60%), Positives = 153/194 (78%)

Query: 1179 ITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVI 1238
            + ++K   V YK   PSY++K++ + N E   + K+++RQ+R PE+GDKFSSRHGQKGV+
Sbjct: 1040 LNDFKLSEVKYKSVYPSYVDKIIFTENGEGLKIYKIIMRQSRLPELGDKFSSRHGQKGVV 1099

Query: 1239 GLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGT 1298
            GL+V QEDMPF ESGICPD+IMNPHG+PSRMTVGKL+EL++ K+ +++G YK G+ F GT
Sbjct: 1100 GLLVNQEDMPFTESGICPDLIMNPHGFPSRMTVGKLLELVSSKSAVLDGEYKYGSIFSGT 1159

Query: 1299 KLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGP 1358
               +  E L R+G+N+  K++ YSG+TGE LE YI+ GP+YYQKLKHMVQDKIHARSRGP
Sbjct: 1160 PFEEAAEVLFRYGFNWSCKELLYSGLTGEPLETYIFMGPIYYQKLKHMVQDKIHARSRGP 1219

Query: 1359 RVVLTRQPTGRRWK 1372
            R +LTRQPT  R K
Sbjct: 1220 RQLLTRQPTEGRSK 1233



 Score =  201 bits (512), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 90/149 (60%), Positives = 118/149 (79%), Gaps = 1/149 (0%)

Query: 187 DIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFE 246
           D+  ++ +D IT  +  AI TGNW I+RFKME+ GV+QVLSRLS+I+ +GMMTR+NSQFE
Sbjct: 565 DVFRNLPKDIITRGMQTAISTGNWNIKRFKMEKSGVSQVLSRLSFIACIGMMTRLNSQFE 624

Query: 247 KTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTEND-EKNMLKIMYNIG 305
           K RKVSGPR+LQ SQWG+LCP DTPEGE+CGLVKNLALMTH+T +ND  +N+++I+Y +G
Sbjct: 625 KGRKVSGPRALQPSQWGVLCPCDTPEGESCGLVKNLALMTHVTNDNDNNENLIEILYTLG 684

Query: 306 IEHIAMFNGEELSSPGVYLVFVNGILAGI 334
           +E      GEE+   GV+ V +NGIL G+
Sbjct: 685 VEDSDSLTGEEMYKEGVFFVVLNGILLGV 713



 Score =  145 bits (367), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 75/135 (55%), Positives = 91/135 (67%), Gaps = 15/135 (11%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKR 751
           F D L    IE++DVNE N+  IA++E  I    TTHLEI P T+LGV AG         
Sbjct: 786 FFDLLKSSVIEWIDVNEQNNLLIALNEKDINLN-TTHLEIDPLTILGVVAG--------- 835

Query: 752 FHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTI 811
                L+PYP+HNQ+PRNTYQCAMGKQA+G IGYNQ  R DTL+Y L+Y Q+P+V+SKTI
Sbjct: 836 -----LIPYPNHNQSPRNTYQCAMGKQAIGSIGYNQFIRCDTLLYLLIYPQKPLVKSKTI 890

Query: 812 RITNFHKLPAGKCQI 826
              NF KLPAG+  I
Sbjct: 891 EFINFEKLPAGQNAI 905



 Score = 80.1 bits (196), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 41/96 (42%), Positives = 68/96 (70%), Gaps = 2/96 (2%)

Query: 440 LRQKRFQTYKKTPVDDARDFLSSTCIAHIPVIN-MRFKMKAMYLAVMIRRMVLALSDPDM 498
           +++K+ +  +K  +++  DFLS   ++HI   +   F+ KA  + +MIRR++ + ++ + 
Sbjct: 434 MKEKQVKN-EKDIIEEGLDFLSRVLLSHIQQKSKYDFRNKARCICLMIRRVLDSANNKNE 492

Query: 499 LDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELKE 534
           LDD+DYYGNKRLELAG L+SL+FED++KRF   LK+
Sbjct: 493 LDDKDYYGNKRLELAGQLISLLFEDLYKRFYFTLKK 528



 Score = 77.8 bits (190), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 37/71 (52%), Positives = 49/71 (69%), Gaps = 1/71 (1%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQ 400
           V +P IEE+       TP  CR RDLTYSAPI VD+EY +G+  V ++++ IGR+P+ML+
Sbjct: 213 VGRPSIEENM-IESNLTPQICRQRDLTYSAPIYVDVEYIKGNSIVTKNNVEIGRLPVMLR 271

Query: 401 SSKCVLRNKTE 411
           S  CVL NK E
Sbjct: 272 SDICVLNNKNE 282



 Score = 72.0 bits (175), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/63 (55%), Positives = 47/63 (74%), Gaps = 2/63 (3%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANAN--IYSDVDPLFYLKYLDI 169
           + +KWKL+ ++LK KGLVK HI+S++YFI  EIK +M A  N  I SD+D  FYL++LDI
Sbjct: 152 LNEKWKLLPAYLKVKGLVKQHIESYNYFIKREIKTIMNATTNKIIKSDIDEHFYLEFLDI 211

Query: 170 HVG 172
            VG
Sbjct: 212 SVG 214


>gi|452820803|gb|EME27841.1| DNA-directed RNA polymerase subunit [Galdieria sulphuraria]
          Length = 1158

 Score =  295 bits (756), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 145/266 (54%), Positives = 185/266 (69%), Gaps = 5/266 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            G++PYPHHNQ+PRNTYQCAMGKQA+G IGYNQ  R DTL+Y L YAQ+P+V +KTI    
Sbjct: 693  GVIPYPHHNQSPRNTYQCAMGKQAIGFIGYNQHLRTDTLLYLLTYAQKPLVNTKTISFIK 752

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + +LP GQNA +AVMSYSGYDIEDALI+N++SLDRG+GRC V R     L++YPN T DR
Sbjct: 753  YDELPGGQNAIVAVMSYSGYDIEDALILNRSSLDRGYGRCCVVRKHAFGLRRYPNGTCDR 812

Query: 1033 ILG-PLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKS----MPTISVSAISMAT 1087
            +   P     + +   +   L++DG+   G ++   Q  V K       T   S  S+  
Sbjct: 813  VCRPPSFSESSERTHMKFACLEEDGLPKVGGRLSPGQAYVYKETPMDTMTTMTSQQSIQQ 872

Query: 1088 PEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
              Y+  P  YKG   + +++V+V+SN+    LIK+++R+TR PE+GDKFSSRHGQKGV G
Sbjct: 873  VGYRPQPFFYKGPDDAVIDRVVVTSNASTHALIKVMIRETRTPEVGDKFSSRHGQKGVCG 932

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            LIV QEDMPFNE GICPDIIMNPHG 
Sbjct: 933  LIVPQEDMPFNEQGICPDIIMNPHGF 958



 Score =  273 bits (698), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 123/189 (65%), Positives = 154/189 (81%)

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
            Y+  P  YKG   + +++V+V+SN+    LIK+++R+TR PE+GDKFSSRHGQKGV GLI
Sbjct: 875  YRPQPFFYKGPDDAVIDRVVVTSNASTHALIKVMIRETRTPEVGDKFSSRHGQKGVCGLI 934

Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
            V QEDMPFNE GICPDIIMNPHG+PSRMTVGKL+EL+AGKAG++ G +K GTAF G  L 
Sbjct: 935  VPQEDMPFNEQGICPDIIMNPHGFPSRMTVGKLLELMAGKAGVLSGEFKNGTAFDGDPLE 994

Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
            D    L++HG++Y GKD  YSG+TGE L+AY++ GP+YYQKLKHMV+DK+HAR+RGPR V
Sbjct: 995  DCASLLVQHGFSYTGKDFLYSGMTGEPLQAYVFMGPIYYQKLKHMVKDKMHARARGPRAV 1054

Query: 1362 LTRQPTGRR 1370
            LTRQPT  R
Sbjct: 1055 LTRQPTEGR 1063



 Score =  223 bits (568), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 111/203 (54%), Positives = 148/203 (72%), Gaps = 5/203 (2%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKI-KAAQFDIVNH 191
           +D  DY+ N  ++   Q  + ++ D+   F    L  H   AD ++ K  +AAQFDIV  
Sbjct: 372 VDDKDYYGNKRLELAGQLLSLLFEDLFKKFNAD-LKRH---ADMVLSKPNRAAQFDIVKC 427

Query: 192 MRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKV 251
           MR DTI+  L  AI TGNWT++RF+M R G+TQVLSRLSYI+ LGMMTRI SQFEKTRK+
Sbjct: 428 MRPDTISVGLENAIGTGNWTVKRFRMHRAGITQVLSRLSYIAALGMMTRITSQFEKTRKI 487

Query: 252 SGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAM 311
           SGPRSLQGSQWG+LCPSDTPEGE+CGLVKNLAL  HITT+ +E+ ++++ Y +G+E   +
Sbjct: 488 SGPRSLQGSQWGLLCPSDTPEGESCGLVKNLALTAHITTDAEEEPLIRLCYILGVEDATL 547

Query: 312 FNGEELSSPGVYLVFVNGILAGI 334
           F+G+EL++P  + +F+NG   GI
Sbjct: 548 FSGDELNNPSHFRIFLNGKFLGI 570



 Score =  158 bits (399), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 74/135 (54%), Positives = 93/135 (68%), Gaps = 14/135 (10%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKR 751
           F D + +G +EYLDVNE N++ IA+SE  I P  TTHLEI+P  +LGVCAG+        
Sbjct: 643 FTDLVQQGLVEYLDVNEENNALIALSEENIEPCSTTHLEISPLAILGVCAGV-------- 694

Query: 752 FHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTI 811
                 +PYPHHNQ+PRNTYQCAMGKQA+G IGYNQ  R DTL+Y L YAQ+P+V +KTI
Sbjct: 695 ------IPYPHHNQSPRNTYQCAMGKQAIGFIGYNQHLRTDTLLYLLTYAQKPLVNTKTI 748

Query: 812 RITNFHKLPAGKCQI 826
               + +LP G+  I
Sbjct: 749 SFIKYDELPGGQNAI 763



 Score = 99.8 bits (247), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 45/113 (39%), Positives = 77/113 (68%), Gaps = 3/113 (2%)

Query: 424 VTMHSQRTSPLLSCKKLRQKRFQ---TYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAM 480
           ++ H Q  +  L     R + F+   +++++ +++A++ L+   ++HIP     F+ K++
Sbjct: 294 ISRHVQNRNEALEYIGSRVRLFRKGYSFRRSTIEEAQEVLAGVILSHIPTYQHNFRNKSI 353

Query: 481 YLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
           YLA M+RR++    +   +DD+DYYGNKRLELAG LLSL+FED+FK+FN++LK
Sbjct: 354 YLAFMVRRLLTVAENLTTVDDKDYYGNKRLELAGQLLSLLFEDLFKKFNADLK 406



 Score = 84.7 bits (208), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 39/71 (54%), Positives = 51/71 (71%), Gaps = 1/71 (1%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQ 400
           V  P IEE    ++  TP ECRLRDLTY+API VD+ YTRG + ++R D+ IGR+PIML+
Sbjct: 101 VGTPSIEEDLVISK-VTPQECRLRDLTYAAPIYVDVRYTRGKEVLIRKDVAIGRIPIMLR 159

Query: 401 SSKCVLRNKTE 411
           SS C+L  K +
Sbjct: 160 SSHCILTGKKD 170



 Score = 67.4 bits (163), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 47/74 (63%), Gaps = 4/74 (5%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           I +KW L+ +FLK +GLVK HI+SF++ I  E+ K++ AN  +  D D  FYL+YL I V
Sbjct: 42  IAEKWLLIPAFLKLRGLVKQHIESFNFLIEKELSKIVAANDKVTCDADQSFYLRYLGIRV 101

Query: 172 GI----ADKIIPKI 181
           G      D +I K+
Sbjct: 102 GTPSIEEDLVISKV 115


>gi|440631707|gb|ELR01626.1| DNA-directed RNA polymerase III subunit C2 [Geomyces destructans
            20631-21]
          Length = 1187

 Score =  295 bits (755), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 142/269 (52%), Positives = 186/269 (69%), Gaps = 8/269 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ  RIDTL+Y +VY Q PMV+++TI +  
Sbjct: 750  GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFARIDTLLYLMVYPQAPMVKTRTIELIR 809

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNA +AVMSYSGYDIEDAL++N+ASLDRGFGRC V R     L +Y N++ DR
Sbjct: 810  YDKLPAGQNAIVAVMSYSGYDIEDALVLNRASLDRGFGRCQVLRKYATKLLKYANRSADR 869

Query: 1033 ILGPLLEADTRK----PVYRHRALDQDGIVAPGEQICERQVLVNKSMP----TISVSAIS 1084
            I     E         P+ +H+ L  DG+   GE      V V K  P    +  + + S
Sbjct: 870  IGDRDFEVRASDGATVPIEKHQLLGADGLAHVGEIARNGDVYVKKETPLNTSSTGIGSDS 929

Query: 1085 MATPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKG 1144
              + + K+  +SY+   P+Y++K+++S    ++ +IK+  RQTRRPE+GDKFSSRHGQKG
Sbjct: 930  GRSSDMKDASMSYRLPDPAYIDKIMISQTENESTVIKVQTRQTRRPELGDKFSSRHGQKG 989

Query: 1145 VIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            V+GLI   +D+PF +SGI PDIIMNPHG 
Sbjct: 990  VVGLIAPAQDLPFADSGITPDIIMNPHGF 1018



 Score =  255 bits (652), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 113/193 (58%), Positives = 155/193 (80%)

Query: 1178 RITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV 1237
            R ++ K+  +SY+   P+Y++K+++S    ++ +IK+  RQTRRPE+GDKFSSRHGQKGV
Sbjct: 931  RSSDMKDASMSYRLPDPAYIDKIMISQTENESTVIKVQTRQTRRPELGDKFSSRHGQKGV 990

Query: 1238 IGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGG 1297
            +GLI   +D+PF +SGI PDIIMNPHG+PSRMTVGK++ELL+GK+G++ G ++ GT FGG
Sbjct: 991  VGLIAPAQDLPFADSGITPDIIMNPHGFPSRMTVGKMLELLSGKSGVIRGTHEYGTCFGG 1050

Query: 1298 TKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRG 1357
            +K+ ++ + L+  GY Y GK+   SGITGEAL AY++ GP+YYQKLKHMVQDK+H+RSRG
Sbjct: 1051 SKVEEMGQGLVDSGYAYAGKEFLTSGITGEALPAYVFMGPIYYQKLKHMVQDKLHSRSRG 1110

Query: 1358 PRVVLTRQPTGRR 1370
            PR +LTRQPT  R
Sbjct: 1111 PRAILTRQPTEGR 1123



 Score =  207 bits (527), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 112/225 (49%), Positives = 152/225 (67%), Gaps = 11/225 (4%)

Query: 118 LVLSFLKEKGLVKPH----IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGI 173
           L + F+  + L+  H    +D  DY  N  ++   Q  + ++ D   LF     D+ + I
Sbjct: 409 LYVCFMVRRVLMAMHDPKLVDDRDYVGNKRLELAGQLLSLLFED---LFKKFNSDLKMNI 465

Query: 174 ADKIIPKI-KAAQFDIVNHMRQ--DTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLS 230
            DK++ K  +  +FD   HM+   + IT  +  AI TGNW+++RFKMER GVT VLSRLS
Sbjct: 466 -DKVLKKPNRTNEFDAYQHMQSHGNYITQGMNRAISTGNWSLKRFKMERAGVTHVLSRLS 524

Query: 231 YISGLGMMTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITT 290
           YI+ LGMMTRI+SQFEKTRKVSGPR+LQ SQ+GMLCPSDTPEGEACGLVKNLALMTHITT
Sbjct: 525 YIAALGMMTRISSQFEKTRKVSGPRALQPSQFGMLCPSDTPEGEACGLVKNLALMTHITT 584

Query: 291 ENDEKNMLKIMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAGIT 335
            +DE+ + K+++ +G E I   +G+E+   G Y++F+NG    +T
Sbjct: 585 NDDEEPVRKLVFVLGAEDIVSMSGKEIYDDGAYVIFINGTPLALT 629



 Score =  163 bits (412), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 79/139 (56%), Positives = 96/139 (69%), Gaps = 15/139 (10%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G   FDDFLY G +EY+D NE ND+ IA+ E+ I P  TTHLEI PFT+LG  AG     
Sbjct: 697 GTMEFDDFLYRGLVEYIDCNEENDAMIALYENAITP-ATTHLEIEPFTILGAVAG----- 750

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ  RIDTL+Y +VY Q PMV+
Sbjct: 751 ---------LIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFARIDTLLYLMVYPQAPMVK 801

Query: 808 SKTIRITNFHKLPAGKCQI 826
           ++TI +  + KLPAG+  I
Sbjct: 802 TRTIELIRYDKLPAGQNAI 820



 Score =  108 bits (269), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 48/96 (50%), Positives = 72/96 (75%), Gaps = 1/96 (1%)

Query: 439 KLRQKRF-QTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPD 497
           K+ + RF Q  ++    D  + L++  I H+PV+ + F+ KA+Y+  M+RR+++A+ DP 
Sbjct: 367 KMGKSRFGQPQRRNFAQDGLEALANIVITHVPVVGLDFRPKALYVCFMVRRVLMAMHDPK 426

Query: 498 MLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
           ++DDRDY GNKRLELAG LLSL+FED+FK+FNS+LK
Sbjct: 427 LVDDRDYVGNKRLELAGQLLSLLFEDLFKKFNSDLK 462



 Score = 80.5 bits (197), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 35/65 (53%), Positives = 50/65 (76%)

Query: 113 RDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           +DKW L+ +FLK KGLVK HIDSF+YF++ EIK +++AN  + SDVD  F+L+Y DI VG
Sbjct: 95  KDKWNLLPAFLKVKGLVKQHIDSFNYFVDHEIKDILKANKFVRSDVDNTFWLEYTDIRVG 154

Query: 173 IADKI 177
             +++
Sbjct: 155 APERL 159



 Score = 77.4 bits (189), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 44/55 (80%)

Query: 357 TPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKTE 411
           TP+ECRLRDLTY+API VDI+Y RG + V R  + IGRMPIML+SSKC L ++ +
Sbjct: 171 TPNECRLRDLTYAAPIFVDIKYVRGKRIVARRGIPIGRMPIMLKSSKCRLTSRND 225


>gi|221059854|ref|XP_002260572.1| DNA-directed RNA polymerase [Plasmodium knowlesi strain H]
 gi|193810646|emb|CAQ42544.1| DNA-directed RNA polymerase, putative [Plasmodium knowlesi strain H]
          Length = 1401

 Score =  293 bits (751), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 150/312 (48%), Positives = 196/312 (62%), Gaps = 53/312 (16%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYP+HNQ+PRNTYQCAMGKQA+G IGYNQ  R DTL+Y LVY Q+P+V+SKTI   N
Sbjct: 895  GLIPYPNHNQSPRNTYQCAMGKQAIGAIGYNQFVRCDTLLYLLVYPQKPLVKSKTIEFIN 954

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNA +AVMS+ GYDIEDA++MNK+S+DRGFGRC+  R     LK+Y N ++D 
Sbjct: 955  FEKLPAGQNAIVAVMSFGGYDIEDAIVMNKSSIDRGFGRCMSLRKHAVELKKYFNGSNDL 1014

Query: 1033 IL-GPLLEADTR--------------------------------------------KPVY 1047
            +L  PL  +  +                                            K + 
Sbjct: 1015 VLPSPLAISKMQERQEKRRQEKLSQSQDKQRQAKEERDHVENGAGTNVDEQKKFHNKEIK 1074

Query: 1048 RHRALDQDGIVAPGEQICERQVLVNKSMP------TISVSAISMATPEYKEVPVSYKGSV 1101
            ++ ALD DG+V+ G  + E QV +NK  P         +S I +   + K   + YK   
Sbjct: 1075 KYHALDMDGVVSIGYLLKEGQVYINKYSPRNVKDHVKDISKIDLN--DLKANEIKYKSVY 1132

Query: 1102 PSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESG 1161
            PSY++K++ + N+E   + K+++RQTR PE+GDKFSSRHGQKGV+GL+V QEDMPF ESG
Sbjct: 1133 PSYIDKIIFTENAEGLKIYKIIMRQTRLPELGDKFSSRHGQKGVVGLLVNQEDMPFTESG 1192

Query: 1162 ICPDIIMNPHGL 1173
            ICPD+IMNPHG 
Sbjct: 1193 ICPDLIMNPHGF 1204



 Score =  255 bits (652), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 114/194 (58%), Positives = 151/194 (77%)

Query: 1179 ITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVI 1238
            + + K   + YK   PSY++K++ + N+E   + K+++RQTR PE+GDKFSSRHGQKGV+
Sbjct: 1118 LNDLKANEIKYKSVYPSYIDKIIFTENAEGLKIYKIIMRQTRLPELGDKFSSRHGQKGVV 1177

Query: 1239 GLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGT 1298
            GL+V QEDMPF ESGICPD+IMNPHG+PSRMTVGKL+EL+A K+ +++G  K G+ F GT
Sbjct: 1178 GLLVNQEDMPFTESGICPDLIMNPHGFPSRMTVGKLLELVASKSAVLDGELKYGSIFSGT 1237

Query: 1299 KLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGP 1358
               ++   L ++G+N   K++ YSG+TGE LE YI+ GP+YYQKLKHMVQDKIHAR+RGP
Sbjct: 1238 PFEEMASILFKYGFNCSSKELLYSGLTGEPLETYIFMGPIYYQKLKHMVQDKIHARARGP 1297

Query: 1359 RVVLTRQPTGRRWK 1372
            R +LTRQPT  R K
Sbjct: 1298 RQLLTRQPTEGRSK 1311



 Score =  201 bits (510), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 105/229 (45%), Positives = 145/229 (63%), Gaps = 18/229 (7%)

Query: 130 KPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYL-----------KYLDIHVGIADKII 178
           K  +D  DY+ N  ++   Q  + ++ D+   FY            KY+  +     K  
Sbjct: 557 KNELDDKDYYGNKRLELAGQLISLLFEDLYKRFYFTLKKQIDQTLSKYMQSNYTSKLKYS 616

Query: 179 PKIKAAQFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMM 238
             +     D+   + +D IT  + AAI TGNW I+RFKME+ GV+QVLSRLS+I+ +GMM
Sbjct: 617 GNVNETYPDVFRSLPKDIITRGMQAAISTGNWNIKRFKMEKSGVSQVLSRLSFIACIGMM 676

Query: 239 TRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTEND-EKNM 297
           TR+NSQFEK RKVSGPR+LQ SQWG+LCP DTPEGE+CGLVKNLALMTH+T +N+  +++
Sbjct: 677 TRLNSQFEKGRKVSGPRALQPSQWGVLCPCDTPEGESCGLVKNLALMTHVTNDNENNEHL 736

Query: 298 LKIMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAGITCHHKEVCKPEI 346
           ++I+Y +G+E      GEE+   G++ V  NGIL G+   HK   KP I
Sbjct: 737 IEILYTLGVEDSDSLTGEEMYKEGIFFVIFNGILLGV---HK---KPRI 779



 Score =  146 bits (369), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 77/139 (55%), Positives = 93/139 (66%), Gaps = 15/139 (10%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G   F D L    IE++DVNE N+  IA++ES I    T+HLEI P T+LGV AG     
Sbjct: 842 GTINFFDLLKSSVIEWIDVNEQNNLLIALNESDISIN-TSHLEIDPLTILGVVAG----- 895

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYP+HNQ+PRNTYQCAMGKQA+G IGYNQ  R DTL+Y LVY Q+P+V+
Sbjct: 896 ---------LIPYPNHNQSPRNTYQCAMGKQAIGAIGYNQFVRCDTLLYLLVYPQKPLVK 946

Query: 808 SKTIRITNFHKLPAGKCQI 826
           SKTI   NF KLPAG+  I
Sbjct: 947 SKTIEFINFEKLPAGQNAI 965



 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/96 (43%), Positives = 68/96 (70%), Gaps = 2/96 (2%)

Query: 440 LRQKRFQTYKKTPVDDARDFLSSTCIAHIPVIN-MRFKMKAMYLAVMIRRMVLALSDPDM 498
           +++K+ +  +K  +++  DFLS   ++HI   N   F+ KA  + +MIRR++ + ++ + 
Sbjct: 501 MKEKQVKN-EKDIIEEGLDFLSRVLLSHIQQKNKYDFRNKARCICLMIRRVLDSANNKNE 559

Query: 499 LDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELKE 534
           LDD+DYYGNKRLELAG L+SL+FED++KRF   LK+
Sbjct: 560 LDDKDYYGNKRLELAGQLISLLFEDLYKRFYFTLKK 595



 Score = 76.6 bits (187), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 36/71 (50%), Positives = 51/71 (71%), Gaps = 1/71 (1%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQ 400
           V +P +EE+   T   TP  CR RDLTYSAPI VD+EY +GS  + ++++ IGR+P+ML+
Sbjct: 280 VGRPLVEENMIET-NLTPQICRQRDLTYSAPIYVDVEYVKGSNIIRKNNVEIGRLPVMLR 338

Query: 401 SSKCVLRNKTE 411
           S  C+L NK+E
Sbjct: 339 SDICILNNKSE 349



 Score = 72.8 bits (177), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/68 (51%), Positives = 49/68 (72%), Gaps = 2/68 (2%)

Query: 107 KDSPEIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANAN--IYSDVDPLFYL 164
           KD   + +KWKL+ ++LK KGLVK HI+S++YFI  EIK +M A  N  + SD+D  FY+
Sbjct: 214 KDIKNVTEKWKLLPAYLKVKGLVKQHIESYNYFIKHEIKTIMNATTNKILKSDIDEHFYV 273

Query: 165 KYLDIHVG 172
           ++LDI VG
Sbjct: 274 EFLDIFVG 281


>gi|398407271|ref|XP_003855101.1| DNA-directed RNA polymerase III subunit RET1 [Zymoseptoria tritici
            IPO323]
 gi|339474985|gb|EGP90077.1| hypothetical protein MYCGRDRAFT_84794 [Zymoseptoria tritici IPO323]
          Length = 1158

 Score =  293 bits (750), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 140/261 (53%), Positives = 180/261 (68%), Gaps = 6/261 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQ  +  QA+G I YNQ  RIDTL+Y +VY Q+PMV ++TI +  
Sbjct: 702  GLIPYPHHNQSPRNTYQACLPPQAIGAIAYNQFTRIDTLLYLMVYPQKPMVTTRTIELVK 761

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNA +AVMSYSGYDIEDAL++NKAS DRGFGRC V++     LK Y N   DR
Sbjct: 762  YDKLPAGQNAVVAVMSYSGYDIEDALVLNKASCDRGFGRCQVFKKISMPLKSYGNGYQDR 821

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKE 1092
            +       D      RHR + +DG+V  G +I    + + K  P    SAI     ++  
Sbjct: 822  L------GDRDAKNTRHRKIGKDGLVEVGSEIESSDMYMLKEQPMNQASAIPQKEQKWSP 875

Query: 1093 VPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQ 1152
            + +SYK   P Y +KV +++N  ++ +IK+  RQTRRPEIGDKFSSRHGQKGV+GL+ EQ
Sbjct: 876  MHMSYKLPDPCYADKVQITTNEANSTIIKIQTRQTRRPEIGDKFSSRHGQKGVVGLLAEQ 935

Query: 1153 EDMPFNESGICPDIIMNPHGL 1173
             DMPF++SG+ PDIIMNPHG 
Sbjct: 936  VDMPFSDSGVIPDIIMNPHGF 956



 Score =  261 bits (667), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 126/248 (50%), Positives = 174/248 (70%), Gaps = 23/248 (9%)

Query: 1134 DKFSSRHGQKGVIGLI-----VEQEDM------PFNESGICPDIIMNPHGLKGCDRITEY 1182
            D  ++RH + G  GL+     +E  DM      P N++   P             +  ++
Sbjct: 826  DAKNTRHRKIGKDGLVEVGSEIESSDMYMLKEQPMNQASAIPQ------------KEQKW 873

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
              + +SYK   P Y +KV +++N  ++ +IK+  RQTRRPEIGDKFSSRHGQKGV+GL+ 
Sbjct: 874  SPMHMSYKLPDPCYADKVQITTNEANSTIIKIQTRQTRRPEIGDKFSSRHGQKGVVGLLA 933

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
            EQ DMPF++SG+ PDIIMNPHG+PSRMTVGK++EL++GKAG++ G  + GTAFGG+K+ D
Sbjct: 934  EQVDMPFSDSGVIPDIIMNPHGFPSRMTVGKMLELVSGKAGVLAGKQEYGTAFGGSKVED 993

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
            +   L++HG++Y GKD   SGITGE+L  Y++ GP+YYQKLKHMVQDK+H+R+ GPR +L
Sbjct: 994  MGATLVKHGFSYSGKDCLTSGITGESLPMYVFFGPIYYQKLKHMVQDKMHSRATGPRAIL 1053

Query: 1363 TRQPTGRR 1370
            TRQPT  R
Sbjct: 1054 TRQPTEGR 1061



 Score =  202 bits (515), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 110/213 (51%), Positives = 144/213 (67%), Gaps = 11/213 (5%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLF--YLKYLDIHVGIADKIIPKIKAAQ-FDIV 189
           +D  DY  N  ++   Q  A ++ D   LF  +++ + +++   DK + K    Q FD V
Sbjct: 380 VDDRDYVGNKRLELAGQMLALLFED---LFKDFVRMIKVNM---DKTLKKPNPTQEFDPV 433

Query: 190 NHMRQDT--ITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEK 247
             + Q    IT+ +  AI TGNWT++RF+M+R GVT VLSRLSYIS LGMMTRI SQFEK
Sbjct: 434 RIVEQGEARITSGMERAISTGNWTLKRFRMDRAGVTHVLSRLSYISALGMMTRITSQFEK 493

Query: 248 TRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIE 307
           TRKVSGPR+LQ SQ+GMLC SDTPEGEACGLVKNLALMTHITT +DE  + K+MY +G E
Sbjct: 494 TRKVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTADDEAPVRKMMYVLGAE 553

Query: 308 HIAMFNGEELSSPGVYLVFVNGILAGITCHHKE 340
            +   +G E+   G Y++F+NG  A +T   K+
Sbjct: 554 DVTSVSGTEIYGNGAYIIFINGTPAALTRQPKQ 586



 Score =  145 bits (367), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 74/139 (53%), Positives = 90/139 (64%), Gaps = 15/139 (10%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G   FDD L  G +EYLDVNE NDS+IAV E  I    TTHLEI PFT+LG  AG     
Sbjct: 649 GTMDFDDALSRGIVEYLDVNEENDSNIAVYEKQIDEH-TTHLEIEPFTILGAVAG----- 702

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQ  +  QA+G I YNQ  RIDTL+Y +VY Q+PMV 
Sbjct: 703 ---------LIPYPHHNQSPRNTYQACLPPQAIGAIAYNQFTRIDTLLYLMVYPQKPMVT 753

Query: 808 SKTIRITNFHKLPAGKCQI 826
           ++TI +  + KLPAG+  +
Sbjct: 754 TRTIELVKYDKLPAGQNAV 772



 Score = 98.6 bits (244), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 44/90 (48%), Positives = 67/90 (74%)

Query: 444 RFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRD 503
           +++  +KTP   A + L++T I H+ V  M F+ KA+Y+A M RR+++A++DP ++DDRD
Sbjct: 325 KWKRNEKTPKQTALEKLAATIIPHVEVEGMNFRPKALYIAFMTRRVLMAMNDPKLVDDRD 384

Query: 504 YYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
           Y GNKRLELAG +L+L+FED+FK F   +K
Sbjct: 385 YVGNKRLELAGQMLALLFEDLFKDFVRMIK 414



 Score = 78.6 bits (192), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/70 (52%), Positives = 49/70 (70%)

Query: 342 CKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQS 401
           C+ E   S       TP+ECRLRD+TY+API VD  Y R S  V ++D++IGRMP+ML+S
Sbjct: 109 CRVEDTRSGWVETAVTPNECRLRDMTYAAPIYVDFVYPRQSGNVRKTDVMIGRMPMMLRS 168

Query: 402 SKCVLRNKTE 411
           SKCVL  ++E
Sbjct: 169 SKCVLNGRSE 178



 Score = 74.3 bits (181), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 32/60 (53%), Positives = 46/60 (76%)

Query: 113 RDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           +DKW L+ +FL+ KGL+K H DS+DYFI+VE+KK+++AN  I SD D   +L++ DI VG
Sbjct: 47  QDKWNLLPAFLRVKGLIKQHTDSYDYFIDVELKKIVKANDFILSDTDKKKWLRFTDIRVG 106


>gi|443897388|dbj|GAC74729.1| RNA polymerase III, second largest subunit [Pseudozyma antarctica
            T-34]
          Length = 1158

 Score =  293 bits (750), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 150/285 (52%), Positives = 191/285 (67%), Gaps = 20/285 (7%)

Query: 899  CWECVLYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYA 958
            C  C+     +HSP L+  P   +      QCAM KQA G IGYNQ  RIDTL+Y +VY 
Sbjct: 686  CLSCL-----YHSPPLLCSPRLFRQ-----QCAMAKQAQGSIGYNQLERIDTLLYLMVYP 735

Query: 959  QRPMVESKTIRITNFHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNS 1018
            Q PMV+++TI +  + KLPAGQNA +AVMS+SGYDIEDAL++NKASLDRGFGRC   + S
Sbjct: 736  QEPMVKTRTIELVGYDKLPAGQNAMVAVMSFSGYDIEDALLLNKASLDRGFGRCQTMKKS 795

Query: 1019 KCVLKQYPNQTHDRILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPT- 1077
              V+++YPN THDR+    ++  T K   R+  L+ DGI   GE++ +  V VNK  P  
Sbjct: 796  STVIRKYPNGTHDRLADAPVDEATGKRQKRYDILEADGIAGVGERVDQGDVYVNKQTPVN 855

Query: 1078 ---ISVSAI------SMATPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTR 1128
                S +AI      + A+  YK  P+SYK  V  Y+++VL++    D  LIK L+RQTR
Sbjct: 856  ANDNSSTAIMIGASNAAASVAYKSAPLSYKPPVSGYIDQVLITDTDSDQTLIKALVRQTR 915

Query: 1129 RPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            RPE+GDKFSSRHGQKGV GLIV+QEDMPF++ GI PDIIMNPHG 
Sbjct: 916  RPELGDKFSSRHGQKGVCGLIVQQEDMPFSDRGINPDIIMNPHGF 960



 Score =  273 bits (697), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 124/191 (64%), Positives = 155/191 (81%)

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
            YK  P+SYK  V  Y+++VL++    D  LIK L+RQTRRPE+GDKFSSRHGQKGV GLI
Sbjct: 877  YKSAPLSYKPPVSGYIDQVLITDTDSDQTLIKALVRQTRRPELGDKFSSRHGQKGVCGLI 936

Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
            V+QEDMPF++ GI PDIIMNPHG+PSRMTVGK+IELL+GKAG++ G  + GTAFGG+++ 
Sbjct: 937  VQQEDMPFSDRGINPDIIMNPHGFPSRMTVGKMIELLSGKAGVVTGTLQYGTAFGGSQVE 996

Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
            D+   L+ +GYNY  K+   SGITG+ LEAY+Y GP+YYQ+LKHMVQDK+HAR+RGPR V
Sbjct: 997  DMSRLLVENGYNYAAKETLTSGITGQPLEAYVYFGPIYYQRLKHMVQDKMHARARGPRAV 1056

Query: 1362 LTRQPTGRRWK 1372
            LTRQPT  R +
Sbjct: 1057 LTRQPTEGRSR 1067



 Score =  213 bits (543), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 110/206 (53%), Positives = 143/206 (69%), Gaps = 7/206 (3%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKI-KAAQFDIVN- 190
           +D  DY  N  ++   Q  A ++ D   LF     D+ + I DKI+ K  +  +FD  N 
Sbjct: 376 VDDRDYVGNKRLELAGQLLALLFED---LFKKFNSDLKLNI-DKILKKPNRTVEFDAFNQ 431

Query: 191 -HMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
            H   D IT+    AI TGNW+++RFKMER GVT VLSRLSYI+ LGMMTRI+SQFEKTR
Sbjct: 432 FHFNGDYITSGFVRAISTGNWSLKRFKMERAGVTHVLSRLSYIAALGMMTRISSQFEKTR 491

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHI 309
           KVSGPR+LQ SQWGMLCPSDTPEGEACGLVKNLAL THITT+ +E+ + ++ + +G+E I
Sbjct: 492 KVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALTTHITTDVEEEPIARVAFTLGVEDI 551

Query: 310 AMFNGEELSSPGVYLVFVNGILAGIT 335
            +  G EL  P  ++V++NG + G+T
Sbjct: 552 HLLTGAELYRPDSFVVYLNGNVLGVT 577



 Score =  103 bits (257), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 44/81 (54%), Positives = 65/81 (80%)

Query: 453 VDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLEL 512
            ++A D L++  +AH+PV  + F+ KA+Y+A M+RR+++A+ D   +DDRDY GNKRLEL
Sbjct: 330 AEEALDVLATVIMAHVPVERLNFRPKAIYIACMVRRVLMAMQDEKKVDDRDYVGNKRLEL 389

Query: 513 AGSLLSLMFEDVFKRFNSELK 533
           AG LL+L+FED+FK+FNS+LK
Sbjct: 390 AGQLLALLFEDLFKKFNSDLK 410



 Score = 85.1 bits (209), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 38/58 (65%), Positives = 49/58 (84%)

Query: 354 RQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKTE 411
           R  TPHECRLRD+TYSA I V+IEYTRGS+ + R ++ IGR+P+ML+S+KCVL NK+E
Sbjct: 118 RPITPHECRLRDITYSAHIFVNIEYTRGSKIIRRKNVAIGRIPVMLRSNKCVLANKSE 175



 Score = 83.2 bits (204), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 35/61 (57%), Positives = 49/61 (80%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           + DKW+LV +FL+ KGLVK HIDS++YF++ ++K +++AN  I SD+DP FYLKY DI V
Sbjct: 46  VEDKWQLVPAFLQVKGLVKQHIDSYNYFVDHDLKNIIKANEKITSDIDPKFYLKYTDITV 105

Query: 172 G 172
           G
Sbjct: 106 G 106



 Score = 75.9 bits (185), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/72 (51%), Positives = 48/72 (66%), Gaps = 5/72 (6%)

Query: 752 FHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTI 811
           +HSP L+  P   +      QCAM KQA G IGYNQ  RIDTL+Y +VY Q PMV+++TI
Sbjct: 691 YHSPPLLCSPRLFRQ-----QCAMAKQAQGSIGYNQLERIDTLLYLMVYPQEPMVKTRTI 745

Query: 812 RITNFHKLPAGK 823
            +  + KLPAG+
Sbjct: 746 ELVGYDKLPAGQ 757


>gi|294953589|ref|XP_002787839.1| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide,
            putative [Perkinsus marinus ATCC 50983]
 gi|239902863|gb|EER19635.1| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide,
            putative [Perkinsus marinus ATCC 50983]
          Length = 1159

 Score =  289 bits (740), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 141/277 (50%), Positives = 181/277 (65%), Gaps = 18/277 (6%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GLVPYPHHNQ+PRNTYQCAMGKQAMG I  NQ  R DT +  L Y Q+PM +S+TI +  
Sbjct: 687  GLVPYPHHNQSPRNTYQCAMGKQAMGNIACNQHLRTDTQLLLLTYPQQPMCKSRTIDLIG 746

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            +  LPAG NA++AVMSYSGYDIEDALIMNKAS+DRGFGRC V R     L +    + + 
Sbjct: 747  YDNLPAGHNASVAVMSYSGYDIEDALIMNKASIDRGFGRCCVTRKYATPLARSAIGSSEE 806

Query: 1033 ILGPLL----------------EADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMP 1076
            +  P +                    +    R+  +D+DG+   GEQ+ +  +L+NK  P
Sbjct: 807  LRAPPVVGGGGKGGGRHQRQGGSVADKHCSCRYAIIDEDGLPFSGEQVVDGGILINKVSP 866

Query: 1077 TISVSAISMATPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKF 1136
                 A +     +++ P+SYK  VPSY+++V+ + N + A + K + RQTRRPE+GDKF
Sbjct: 867  M--SDAATGQVSHWRDTPISYKNPVPSYVDRVIATENEDQAKIFKCITRQTRRPELGDKF 924

Query: 1137 SSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            SSRHGQKGV+GLIV QEDMPF E G CPD+IMNPHG 
Sbjct: 925  SSRHGQKGVVGLIVNQEDMPFGEKGWCPDLIMNPHGF 961



 Score =  268 bits (686), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 126/228 (55%), Positives = 168/228 (73%), Gaps = 4/228 (1%)

Query: 1149 IVEQEDMPFN-ESGICPDIIMN---PHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSS 1204
            I++++ +PF+ E  +   I++N   P       +++ +++ P+SYK  VPSY+++V+ + 
Sbjct: 841  IIDEDGLPFSGEQVVDGGILINKVSPMSDAATGQVSHWRDTPISYKNPVPSYVDRVIATE 900

Query: 1205 NSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHG 1264
            N + A + K + RQTRRPE+GDKFSSRHGQKGV+GLIV QEDMPF E G CPD+IMNPHG
Sbjct: 901  NEDQAKIFKCITRQTRRPELGDKFSSRHGQKGVVGLIVNQEDMPFGEKGWCPDLIMNPHG 960

Query: 1265 YPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGI 1324
            +PSRMTVGKL+E ++GKAG+++G    GTAFGGT    + + LIRHG++   K+   SG+
Sbjct: 961  FPSRMTVGKLLECVSGKAGVLDGERSYGTAFGGTTKEHMTQSLIRHGFHPSAKEYITSGV 1020

Query: 1325 TGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
            TGEALE YI+ GP+YYQKLKHMV DKIHARS GP   LTRQPT  R K
Sbjct: 1021 TGEALECYIFVGPIYYQKLKHMVMDKIHARSTGPVNQLTRQPTEGRAK 1068



 Score =  183 bits (464), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 79/148 (53%), Positives = 111/148 (75%)

Query: 187 DIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFE 246
           D++  +  + IT  +  AI +GNW I+RF+++R GV+QVLSR S+I+ LG MTR+ SQFE
Sbjct: 417 DVLRDIDSERITRGMNRAISSGNWNIKRFRIDRSGVSQVLSRFSFIAALGAMTRVKSQFE 476

Query: 247 KTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGI 306
           K+RK++GPR+LQ SQWGMLCPSDTPEGE CGL+K L+L+ H+TT ++E  + ++ Y++G+
Sbjct: 477 KSRKLAGPRALQPSQWGMLCPSDTPEGEQCGLIKALSLLAHVTTPDEEGPIRRLCYSLGV 536

Query: 307 EHIAMFNGEELSSPGVYLVFVNGILAGI 334
           E  A   GEEL S G   VF+NG L G+
Sbjct: 537 EDAAGLTGEELHSAGTITVFLNGALLGV 564



 Score =  135 bits (340), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 71/135 (52%), Positives = 86/135 (63%), Gaps = 15/135 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G  RF DFL  G IE++DVNE N+S+IA++   +    +THLEI P TLLG  AG     
Sbjct: 634 GELRFTDFLRLGIIEWVDVNEENNSYIAINPEDVTME-STHLEIEPLTLLGAVAG----- 687

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    LVPYPHHNQ+PRNTYQCAMGKQAMG I  NQ  R DT +  L Y Q+PM +
Sbjct: 688 ---------LVPYPHHNQSPRNTYQCAMGKQAMGNIACNQHLRTDTQLLLLTYPQQPMCK 738

Query: 808 SKTIRITNFHKLPAG 822
           S+TI +  +  LPAG
Sbjct: 739 SRTIDLIGYDNLPAG 753



 Score = 79.7 bits (195), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 35/63 (55%), Positives = 49/63 (77%)

Query: 473 MRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSEL 532
           + F  K  +L +M+RR + A SD  +LDDRDYYGNKRLELAG L++L+FED+FK  N+E+
Sbjct: 325 LDFSGKCRFLCLMMRRALDARSDSTLLDDRDYYGNKRLELAGQLIALLFEDLFKSMNTEI 384

Query: 533 KET 535
           K++
Sbjct: 385 KKS 387



 Score = 73.9 bits (180), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 47/61 (77%), Gaps = 2/61 (3%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANAN--IYSDVDPLFYLKYLDIHV 171
           DKW+L+ +FL+ +GLVK HIDSF+YF+  EIK ++ A +N  I SDVDP ++L+Y D+ V
Sbjct: 31  DKWELLPAFLEARGLVKQHIDSFNYFVTTEIKDIVLAESNRRITSDVDPNWFLEYHDVRV 90

Query: 172 G 172
           G
Sbjct: 91  G 91



 Score = 63.9 bits (154), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 28/56 (50%), Positives = 40/56 (71%)

Query: 355 QTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
           QTTP  CR+RD+TY++ I VDI Y RG + V ++ + +GR+PIML+S  C L + T
Sbjct: 103 QTTPMMCRIRDMTYASDILVDISYVRGREVVRKNGVCVGRLPIMLRSKLCRLHDAT 158


>gi|302848540|ref|XP_002955802.1| hypothetical protein VOLCADRAFT_66175 [Volvox carteri f. nagariensis]
 gi|300258995|gb|EFJ43227.1| hypothetical protein VOLCADRAFT_66175 [Volvox carteri f. nagariensis]
          Length = 1154

 Score =  289 bits (740), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 141/269 (52%), Positives = 186/269 (69%), Gaps = 8/269 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+P+PHHNQ+PRNTYQCAMGKQAMG I YNQ +R+DTL+Y LVY QRP++ ++TI +  
Sbjct: 681  GLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNQLSRMDTLLYLLVYPQRPLLTTRTIELVG 740

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KL AGQNA++AVMSYSGYDIEDA++MNK SLDRGFGRC+V +   C L++Y N++HDR
Sbjct: 741  FDKLGAGQNASVAVMSYSGYDIEDAIVMNKYSLDRGFGRCIVLKKYGCSLRKYANRSHDR 800

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTIS---VSAISMATPE 1089
            I+ PL     +    R R LD+DGI + G+ I    V +N   P+ +   + A +M    
Sbjct: 801  IVAPLPAPGQKSVQSRFRLLDRDGIASVGDYILPGDVYINMQRPSNTRDPLPASNMPDSF 860

Query: 1090 YKEVP-VSYKGSVPSYLEKV----LVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKG 1144
            Y+     +  G    +   V       +N    + +++L+R TRRPE+GDKFSSRHGQKG
Sbjct: 861  YRAGEGCTRAGQALGFCSSVGGGGREGANKHCVWGMRVLIRHTRRPELGDKFSSRHGQKG 920

Query: 1145 VIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            V+G IV QED PF+E G+CPD+IMNPHG 
Sbjct: 921  VVGNIVRQEDFPFSERGVCPDLIMNPHGF 949



 Score =  207 bits (527), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 107/203 (52%), Positives = 141/203 (69%), Gaps = 5/203 (2%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKI-KAAQFDIVNH 191
           ID  DY+ N   K+L  A A +    + LF     DI    AD ++ K  +A QFD+   
Sbjct: 363 IDDRDYYGN---KRLELAGALMSLLFEDLFKRLNSDIKRQ-ADSVLSKANRATQFDVAKA 418

Query: 192 MRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKV 251
           +R DTIT  L +A+ +GNW I+RF+MER+GVTQVLSRLS+I+ +GMMTR+ SQFEKTRKV
Sbjct: 419 IRTDTITYGLESALSSGNWIIKRFRMERKGVTQVLSRLSFIAAMGMMTRMTSQFEKTRKV 478

Query: 252 SGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAM 311
           SGPR+L  SQWGMLCP+DTPEGE+CGLVKNLALMTH+TT+ +E ++ +++  +G E I  
Sbjct: 479 SGPRALHPSQWGMLCPADTPEGESCGLVKNLALMTHVTTDEEEVSICRLLVMLGTEPITS 538

Query: 312 FNGEELSSPGVYLVFVNGILAGI 334
               E+   G  LVF+NG L G+
Sbjct: 539 LAPAEMHGQGGALVFLNGNLVGV 561



 Score =  167 bits (424), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 91/167 (54%), Positives = 112/167 (67%), Gaps = 2/167 (1%)

Query: 1204 SNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPH 1263
            +N    + +++L+R TRRPE+GDKFSSRHGQKGV+G IV QED PF+E G+CPD+IMNPH
Sbjct: 888  ANKHCVWGMRVLIRHTRRPELGDKFSSRHGQKGVVGNIVRQEDFPFSERGVCPDLIMNPH 947

Query: 1264 GYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSG 1323
            G+PSRMTV  +     G  G+     + G+   G  L  +   L  H    +      S 
Sbjct: 948  GFPSRMTVRGVSGGGVGGQGVCGFWGRWGSRRMGENLSPLPHHL--HPLMVRRPSPPPSV 1005

Query: 1324 ITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRR 1370
              GE LEAYI+ GPVYYQKLKHMV DK+HAR+RGPRVVLTRQPT  R
Sbjct: 1006 SPGEPLEAYIFMGPVYYQKLKHMVLDKMHARARGPRVVLTRQPTEGR 1052



 Score =  145 bits (365), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 73/132 (55%), Positives = 91/132 (68%), Gaps = 15/132 (11%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKR 751
           F DFL  G +EYLDVNE N S IA+ E      +TTHLEI PFT++GV +G         
Sbjct: 632 FPDFLRRGLVEYLDVNEENVSLIALYEKDCNK-MTTHLEIEPFTIMGVVSG--------- 681

Query: 752 FHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTI 811
                L+P+PHHNQ+PRNTYQCAMGKQAMG I YNQ +R+DTL+Y LVY QRP++ ++TI
Sbjct: 682 -----LIPFPHHNQSPRNTYQCAMGKQAMGNIAYNQLSRMDTLLYLLVYPQRPLLTTRTI 736

Query: 812 RITNFHKLPAGK 823
            +  F KL AG+
Sbjct: 737 ELVGFDKLGAGQ 748



 Score =  113 bits (282), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 50/90 (55%), Positives = 70/90 (77%)

Query: 444 RFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRD 503
           R +  +K+ VD+ARD L++  + H+PV   +F  K  Y+AVM+RRM+ A+ DP  +DDRD
Sbjct: 308 RLRKRRKSKVDEARDVLANVVLCHVPVPRYQFAHKIAYVAVMMRRMLYAVLDPACIDDRD 367

Query: 504 YYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
           YYGNKRLELAG+L+SL+FED+FKR NS++K
Sbjct: 368 YYGNKRLELAGALMSLLFEDLFKRLNSDIK 397



 Score = 75.9 bits (185), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 55/91 (60%)

Query: 82  PNWLGTVKAVHGTYLTMVTDETSKLKDSPEIRDKWKLVLSFLKEKGLVKPHIDSFDYFIN 141
           P+ L  V         +  D T   +    ++DK+ L+ +FLK +GLVK H+DSF++ +N
Sbjct: 4   PDGLAAVGGDEALAEALYGDPTRLTEPIKAVQDKFALLPAFLKVRGLVKQHLDSFNFLLN 63

Query: 142 VEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
            E++K++ AN  +  D DP FYLKY +I+VG
Sbjct: 64  SELRKIVAANEKVTCDTDPNFYLKYTNIYVG 94



 Score = 75.9 bits (185), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/100 (45%), Positives = 56/100 (56%), Gaps = 17/100 (17%)

Query: 318 SSPGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIE 377
           + P  YL + N I  G          P ++E       TTP +CRLRD TYSAPITVDIE
Sbjct: 80  TDPNFYLKYTN-IYVG---------SPSMDEDMVQV-GTTPQQCRLRDATYSAPITVDIE 128

Query: 378 YTRGSQRVVR------SDLVIGRMPIMLQSSKCVLRNKTE 411
           YTRG + VV+        + IGRMP+ML+  +CVL  K E
Sbjct: 129 YTRGKEIVVKRGRGGVGAVCIGRMPLMLRCDRCVLYGKNE 168


>gi|412992275|emb|CCO19988.1| DNA-directed RNA polymerase III subunit RPC2 [Bathycoccus prasinos]
          Length = 1251

 Score =  289 bits (739), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 134/267 (50%), Positives = 186/267 (69%), Gaps = 8/267 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            G++P+PHHNQ+PRNTYQCAMGKQAMG + +NQ NR+DTLMY L  AQ+P+V +KTI +  
Sbjct: 769  GIIPFPHHNQSPRNTYQCAMGKQAMGNLAFNQLNRMDTLMYTLCSAQKPLVTTKTIELIQ 828

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + +L AGQNA IAV+S +GYDIEDA+++N+ASLDRGFGRC V R     +K+Y N+T D+
Sbjct: 829  YDRLGAGQNAVIAVLSNTGYDIEDAVVINRASLDRGFGRCQVSRKYSATMKKYANRTQDK 888

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAIS----MATP 1088
            +L P +     K +  +R LD DG    G +I  + + +NK MP  +   ++    +   
Sbjct: 889  VLKPSIT--QMKKMKNYRVLDDDGYAQVGVRIRNKDIYINKHMPLNTRDPMTNPDQLPDR 946

Query: 1089 EYKEVPVSYKGSV--PSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVI 1146
            E++  P  Y+G       ++KV+++   E+ F++K L+R TRRPE+GDKFSSRHGQKGV+
Sbjct: 947  EFRPAPQVYRGPEVDECVVDKVMLTVTDENQFVVKTLVRHTRRPEVGDKFSSRHGQKGVV 1006

Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G I+ QED P  E GICPD++MNPHG 
Sbjct: 1007 GAILPQEDFPCTERGICPDLVMNPHGF 1033



 Score =  234 bits (597), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 119/235 (50%), Positives = 155/235 (65%), Gaps = 25/235 (10%)

Query: 1155 MPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSV--PSYLEKVLVSSNSEDAFLI 1212
            MP N      D + NP  L   DR  E++  P  Y+G       ++KV+++   E+ F++
Sbjct: 929  MPLNTR----DPMTNPDQLP--DR--EFRPAPQVYRGPEVDECVVDKVMLTVTDENQFVV 980

Query: 1213 KMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVG 1272
            K L+R TRRPE+GDKFSSRHGQKGV+G I+ QED P  E GICPD++MNPHG+PSRMTVG
Sbjct: 981  KTLVRHTRRPEVGDKFSSRHGQKGVVGAILPQEDFPCTERGICPDLVMNPHGFPSRMTVG 1040

Query: 1273 KLIELLAGKAGLMEGNYKEGTAFGGTKLV---------------DVQEELIRHGYNYQGK 1317
            KLIELLAGKA   EG +++ +AF    +                ++ E L++ GY   GK
Sbjct: 1041 KLIELLAGKAASEEGTFRDASAFASNDISSATAAGTTNKNESVDEIGEALLKAGYASDGK 1100

Query: 1318 DIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
            +    G+TGE L+A I++GPVYYQKLKHMV DK+HAR+RGPRVVLTRQPT  R +
Sbjct: 1101 ETLICGLTGEYLQARIFTGPVYYQKLKHMVLDKMHARARGPRVVLTRQPTEGRAR 1155



 Score =  222 bits (566), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 113/211 (53%), Positives = 147/211 (69%), Gaps = 7/211 (3%)

Query: 132 HIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG-IADKIIPKI-KAAQFDIV 189
            +D  DY+ N  ++   Q  A ++ D       K L+  +   AD ++ K  +A QFD+V
Sbjct: 447 EVDDKDYYGNKRLELAGQLLALLFEDC-----FKRLNADLKRQADAVLSKANRAQQFDVV 501

Query: 190 NHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
             +RQDTI+N L  AI TGNWT++RF+MER+GVTQVLSRLS+IS +GMMTRI SQFEKTR
Sbjct: 502 KCIRQDTISNGLEHAISTGNWTVKRFRMERKGVTQVLSRLSFISAIGMMTRITSQFEKTR 561

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHI 309
           KVSGPR+LQ SQWGMLCPSDTPEGE+CGLVKNLALMTH+TT++DE+ ++K+   +G E +
Sbjct: 562 KVSGPRALQPSQWGMLCPSDTPEGESCGLVKNLALMTHVTTDSDEEPLIKLARALGCELL 621

Query: 310 AMFNGEELSSPGVYLVFVNGILAGITCHHKE 340
               GEEL      LV +NG + G     K+
Sbjct: 622 EHLAGEELHQKDSALVLLNGSILGSVSQPKQ 652



 Score =  159 bits (403), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 74/132 (56%), Positives = 92/132 (69%), Gaps = 14/132 (10%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKR 751
           FDDFL  G +EYLDVNE ND++IA+ E  +     TH EI PFTLLGVCAGI        
Sbjct: 719 FDDFLKRGYVEYLDVNEENDAYIALHEKDLTADAHTHCEIEPFTLLGVCAGI-------- 770

Query: 752 FHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTI 811
                 +P+PHHNQ+PRNTYQCAMGKQAMG + +NQ NR+DTLMY L  AQ+P+V +KTI
Sbjct: 771 ------IPFPHHNQSPRNTYQCAMGKQAMGNLAFNQLNRMDTLMYTLCSAQKPLVTTKTI 824

Query: 812 RITNFHKLPAGK 823
            +  + +L AG+
Sbjct: 825 ELIQYDRLGAGQ 836



 Score =  105 bits (262), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 47/103 (45%), Positives = 71/103 (68%)

Query: 431 TSPLLSCKKLRQKRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMV 490
           ++P+     +        ++T  D+ARD  +   +AH+PV +  F+ K+ Y+ VMIRR++
Sbjct: 380 SAPIGKENNVNANHININRRTRSDEARDIFAGVVLAHVPVEDYDFRGKSAYVCVMIRRIL 439

Query: 491 LALSDPDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
           LA  +P+ +DD+DYYGNKRLELAG LL+L+FED FKR N++LK
Sbjct: 440 LANLNPEEVDDKDYYGNKRLELAGQLLALLFEDCFKRLNADLK 482



 Score = 80.1 bits (196), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 38/94 (40%), Positives = 55/94 (58%), Gaps = 10/94 (10%)

Query: 318 SSPGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIE 377
           S P  YL + N            V  P+  +     +  TP +CRLRD+TY+AP+ VD+E
Sbjct: 97  SDPNFYLRYKN----------VSVGSPQTVDERMVKQDITPQQCRLRDMTYAAPVMVDVE 146

Query: 378 YTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKTE 411
           YT+G   +   D+ IG++P+ML+SS+C LRNK E
Sbjct: 147 YTKGKDIITTHDVCIGKIPLMLRSSRCCLRNKGE 180



 Score = 70.1 bits (170), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 32/63 (50%), Positives = 48/63 (76%), Gaps = 2/63 (3%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANAN--IYSDVDPLFYLKYLDI 169
           ++DK++L+ +FLK +GLV+ HI+SFDY I+ EIKK++ A AN  +  D DP FYL+Y ++
Sbjct: 49  MKDKFELLPAFLKVRGLVRQHIESFDYLIDEEIKKIVSAKANNKVTCDSDPNFYLRYKNV 108

Query: 170 HVG 172
            VG
Sbjct: 109 SVG 111


>gi|294950795|ref|XP_002786777.1| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide,
            putative [Perkinsus marinus ATCC 50983]
 gi|239901131|gb|EER18573.1| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide,
            putative [Perkinsus marinus ATCC 50983]
          Length = 1140

 Score =  288 bits (738), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 141/274 (51%), Positives = 181/274 (66%), Gaps = 15/274 (5%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GLVPYPHHNQ+PRNTYQCAMGKQAMG I  NQ  R DT +  L Y Q+PM +S+TI +  
Sbjct: 671  GLVPYPHHNQSPRNTYQCAMGKQAMGNIACNQHLRTDTQLLLLTYPQQPMCKSRTIDLIG 730

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            +  LPAG NA++AVMSYSGYDIEDALIMNKAS+DRGFGRC V R     L +    + + 
Sbjct: 731  YDNLPAGHNASVAVMSYSGYDIEDALIMNKASIDRGFGRCCVTRKYATPLARSAIGSSEE 790

Query: 1033 ILGPLLEADTRKP-------------VYRHRALDQDGIVAPGEQICERQVLVNKSMPTIS 1079
            +  P +     K                ++  +D+DG+   GEQ+ +  +L+NK  P   
Sbjct: 791  LRAPPVVGGGGKGGGRHQRQGGFVGRAKKYAIIDEDGLPFSGEQVVDGGILINKVSPM-- 848

Query: 1080 VSAISMATPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSR 1139
              A +     +++ P+SYK  VPSY+++V+ + N + A + K + RQTRRPE+GDKFSSR
Sbjct: 849  SDAATGQVSHWRDTPISYKNPVPSYVDRVIATENEDQAKIFKCITRQTRRPELGDKFSSR 908

Query: 1140 HGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            HGQKGV+GLIV QEDMPF E G CPD+IMNPHG 
Sbjct: 909  HGQKGVVGLIVNQEDMPFGEKGWCPDLIMNPHGF 942



 Score =  268 bits (686), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 126/228 (55%), Positives = 168/228 (73%), Gaps = 4/228 (1%)

Query: 1149 IVEQEDMPFN-ESGICPDIIMN---PHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSS 1204
            I++++ +PF+ E  +   I++N   P       +++ +++ P+SYK  VPSY+++V+ + 
Sbjct: 822  IIDEDGLPFSGEQVVDGGILINKVSPMSDAATGQVSHWRDTPISYKNPVPSYVDRVIATE 881

Query: 1205 NSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHG 1264
            N + A + K + RQTRRPE+GDKFSSRHGQKGV+GLIV QEDMPF E G CPD+IMNPHG
Sbjct: 882  NEDQAKIFKCITRQTRRPELGDKFSSRHGQKGVVGLIVNQEDMPFGEKGWCPDLIMNPHG 941

Query: 1265 YPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGI 1324
            +PSRMTVGKL+E ++GKAG+++G    GTAFGGT    + + LIRHG++   K+   SG+
Sbjct: 942  FPSRMTVGKLLECVSGKAGVLDGERSYGTAFGGTTKEHMTQSLIRHGFHPSAKEYITSGV 1001

Query: 1325 TGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
            TGEALE YI+ GP+YYQKLKHMV DKIHARS GP   LTRQPT  R K
Sbjct: 1002 TGEALECYIFVGPIYYQKLKHMVMDKIHARSTGPVNQLTRQPTEGRAK 1049



 Score =  164 bits (415), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 74/128 (57%), Positives = 100/128 (78%), Gaps = 2/128 (1%)

Query: 207 TGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVSGPRSLQGSQWGMLC 266
           TGN  I+RF+++R GV+QVLSR S+I+ LG MTR+ SQFEK+RK++GPR+LQ SQWGMLC
Sbjct: 423 TGN--IKRFRIDRSGVSQVLSRFSFIAALGAMTRVKSQFEKSRKLAGPRALQPSQWGMLC 480

Query: 267 PSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMFNGEELSSPGVYLVF 326
           PSDTPEGE CGL+K L+L+ H+TT ++E  + ++ Y++G+E  A   GEEL S G   VF
Sbjct: 481 PSDTPEGEQCGLIKALSLLAHVTTPDEEGPIRRLCYSLGVEDAAGLTGEELHSAGTITVF 540

Query: 327 VNGILAGI 334
           +NG L G+
Sbjct: 541 LNGALLGV 548



 Score =  135 bits (340), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 71/135 (52%), Positives = 86/135 (63%), Gaps = 15/135 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G  RF DFL  G IE++DVNE N+S+IA++   +    +THLEI P TLLG  AG     
Sbjct: 618 GELRFTDFLRLGIIEWVDVNEENNSYIAINPEDVTME-STHLEIEPLTLLGAVAG----- 671

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    LVPYPHHNQ+PRNTYQCAMGKQAMG I  NQ  R DT +  L Y Q+PM +
Sbjct: 672 ---------LVPYPHHNQSPRNTYQCAMGKQAMGNIACNQHLRTDTQLLLLTYPQQPMCK 722

Query: 808 SKTIRITNFHKLPAG 822
           S+TI +  +  LPAG
Sbjct: 723 SRTIDLIGYDNLPAG 737



 Score = 79.3 bits (194), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 35/63 (55%), Positives = 49/63 (77%)

Query: 473 MRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSEL 532
           + F  K  +L +M+RR + A SD  +LDDRDYYGNKRLELAG L++L+FED+FK  N+E+
Sbjct: 325 LDFSGKCRFLCLMMRRALDARSDSTLLDDRDYYGNKRLELAGQLIALLFEDLFKSMNTEI 384

Query: 533 KET 535
           K++
Sbjct: 385 KKS 387



 Score = 73.9 bits (180), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 47/61 (77%), Gaps = 2/61 (3%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANAN--IYSDVDPLFYLKYLDIHV 171
           DKW+L+ +FL+ +GLVK HIDSF+YF+  EIK ++ A +N  I SDVDP ++L+Y D+ V
Sbjct: 31  DKWELLPAFLEARGLVKQHIDSFNYFVTTEIKDIVLAESNRRITSDVDPNWFLEYHDVRV 90

Query: 172 G 172
           G
Sbjct: 91  G 91



 Score = 63.9 bits (154), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 28/56 (50%), Positives = 40/56 (71%)

Query: 355 QTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
           QTTP  CR+RD+TY++ I VDI Y RG + V ++ + +GR+PIML+S  C L + T
Sbjct: 103 QTTPMMCRIRDMTYASDILVDISYVRGREVVRKNGVCVGRLPIMLRSKLCRLHDAT 158


>gi|444511897|gb|ELV09971.1| DNA-directed RNA polymerase III subunit RPC2 [Tupaia chinensis]
          Length = 841

 Score =  288 bits (738), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 128/188 (68%), Positives = 161/188 (85%), Gaps = 4/188 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMY L Y Q+PMV++KTI +  
Sbjct: 516  GLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIE 575

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNAT+AVMSYSGYDIEDAL++NKASLDRGFGRCLVY+N+KC LK+Y NQT D+
Sbjct: 576  FEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDK 635

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT----P 1088
            ++GP+L+A TRKP++RH  LD DGI +PGE++  +QVLVNKSMPT++   +  ++    P
Sbjct: 636  VMGPMLDAATRKPIWRHEILDADGICSPGERVENKQVLVNKSMPTVTQIPLEGSSVPQQP 695

Query: 1089 EYKEVPVS 1096
            +YK+VP++
Sbjct: 696  QYKDVPIT 703



 Score =  241 bits (615), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 160/377 (42%), Positives = 205/377 (54%), Gaps = 44/377 (11%)

Query: 466 AHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGSLLSLMFEDVF 525
             + V    F+ K +Y AVM+RR++LA  D + +DDRDYYGNKRLELAG LLSL+FED+F
Sbjct: 232 TQMQVKEFNFRAKCIYTAVMVRRVILAQGD-NKVDDRDYYGNKRLELAGQLLSLLFEDLF 290

Query: 526 KRFNSELKETNLSGVVNLVSGWWFELKYGNKIYIRSPSRKLL--AAGFSGPHSGRVRL-- 581
           K+FNSE+K+     +    +  +  +K+  +  I +     +  A G     +    +  
Sbjct: 291 KKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTACGLVKNLALMTHITT 350

Query: 582 -MPEGPTILLNSCLRSGGKAQHEALYNAVQRHATKCCTLNFLFFLGGGGILPSIQRQTTC 640
            M +GP + L S L   G      L      +        FL FL G  IL  I+     
Sbjct: 351 DMEDGPIVKLASNL---GVEDVNLLCGEELSYPNV-----FLVFLNGN-ILGVIRDHKKL 401

Query: 641 LLTLILFSLNGDGKRGARNSQQYCD-CPDGYSSG---CQP-------RPTFLNMHQ---F 686
           + T  L    G        S    D C    S G   C+P       +P   N H     
Sbjct: 402 VNTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPAVTNKHMEELA 461

Query: 687 LGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELL 746
            G++ F+DFL+E  +EYLDVNE ND +IA+ E  I    TTHLEI PFTLLGVCAG    
Sbjct: 462 QGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKD-TTHLEIEPFTLLGVCAG---- 516

Query: 747 QYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMV 806
                     L+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMY L Y Q+PMV
Sbjct: 517 ----------LIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMV 566

Query: 807 ESKTIRITNFHKLPAGK 823
           ++KTI +  F KLPAG+
Sbjct: 567 KTKTIELIEFEKLPAGQ 583



 Score =  114 bits (285), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 57/93 (61%), Positives = 69/93 (74%), Gaps = 10/93 (10%)

Query: 318 SSPGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIE 377
           + P  YL ++N I  G+         P++EESFN TR  +PHECRLRD+TYSAPITVDIE
Sbjct: 22  ADPMWYLKYLN-IYVGL---------PDVEESFNVTRPVSPHECRLRDMTYSAPITVDIE 71

Query: 378 YTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
           YTRGSQR++R+ L IGRMPIML+SS CVL  KT
Sbjct: 72  YTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKT 104



 Score = 78.6 bits (192), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 36/46 (78%), Positives = 39/46 (84%)

Query: 1327 EALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
            E LEAYIY GPVYYQKLKHMV DK+HAR+RGPR VLTRQPT  R +
Sbjct: 704  EPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSR 749



 Score = 77.8 bits (190), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 35/67 (52%), Positives = 51/67 (76%)

Query: 275 ACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
           ACGLVKNLALMTHITT+ ++  ++K+  N+G+E + +  GEELS P V+LVF+NG + G+
Sbjct: 335 ACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLLCGEELSYPNVFLVFLNGNILGV 394

Query: 335 TCHHKEV 341
              HK++
Sbjct: 395 IRDHKKL 401



 Score = 48.5 bits (114), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 19/34 (55%), Positives = 29/34 (85%)

Query: 142 VEIKKLMQANANIYSDVDPLFYLKYLDIHVGIAD 175
           ++IKK+M+AN  + SD DP++YLKYL+I+VG+ D
Sbjct: 6   LQIKKIMKANEKVTSDADPMWYLKYLNIYVGLPD 39


>gi|297791275|ref|XP_002863522.1| hypothetical protein ARALYDRAFT_917015 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297309357|gb|EFH39781.1| hypothetical protein ARALYDRAFT_917015 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1165

 Score =  288 bits (738), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 141/266 (53%), Positives = 183/266 (68%), Gaps = 8/266 (3%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG I YNQ NR+DTL+Y LVY QRP++ ++TI +  
Sbjct: 695  GLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLNRMDTLLYLLVYPQRPLLTTRTIELVG 754

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KL AGQNAT+AVMS SGYDIEDA++MNK+SLDRGFGRC+V +      ++Y N T DR
Sbjct: 755  YDKLGAGQNATVAVMSNSGYDIEDAIVMNKSSLDRGFGRCIVMKKIVATCQKYENGTVDR 814

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPE 1089
            IL P     T     + + LD DGI +PGE I    V + K +P  +        ++  +
Sbjct: 815  ILMP---QRTGPDAEKMQILDDDGIASPGEIIRPNDVYIYKQIPVCTTRDKITSPLSDSQ 871

Query: 1090 YKEVPVSYKG--SVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
            Y+     +KG       +++V + S+   +  IK ++R TRRPE+GDKFSSRHGQKGV G
Sbjct: 872  YRPAREFFKGPEGETQVVDRVALCSDKSGSLCIKYIIRHTRRPELGDKFSSRHGQKGVCG 931

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
             I++QED PF+E GICPD+IMNPHG 
Sbjct: 932  TIIQQEDFPFSELGICPDLIMNPHGF 957



 Score =  230 bits (587), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 105/181 (58%), Positives = 138/181 (76%), Gaps = 5/181 (2%)

Query: 1197 LEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICP 1256
            +++V + S+   +  IK ++R TRRPE+GDKFSSRHGQKGV G I++QED PF+E GICP
Sbjct: 889  VDRVALCSDKSGSLCIKYIIRHTRRPELGDKFSSRHGQKGVCGTIIQQEDFPFSELGICP 948

Query: 1257 DIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFG-----GTKLVDVQEELIRHG 1311
            D+IMNPHG+PSRMTVGK+IELL  KAG+  G +  G+AFG       K+  + + L+  G
Sbjct: 949  DLIMNPHGFPSRMTVGKMIELLGSKAGVSCGRFHYGSAFGERSGHADKVETISKTLVDKG 1008

Query: 1312 YNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRW 1371
            ++Y GKD+ YSG++GE LEAYI+ GP+YYQKLKHMV DK+HAR  GPRV++TRQPT  + 
Sbjct: 1009 FSYSGKDLLYSGLSGEPLEAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMMTRQPTEGKS 1068

Query: 1372 K 1372
            K
Sbjct: 1069 K 1069



 Score =  186 bits (473), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 96/221 (43%), Positives = 145/221 (65%), Gaps = 9/221 (4%)

Query: 118 LVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKI 177
           ++L  + E  L K  +D  DY  N  ++   Q  + ++ D+    +   L   +   D I
Sbjct: 343 VMLRRMIEAMLNKDSMDDKDYVGNKRLELSGQLMSLLFEDL----FKTMLSEAIKKVDAI 398

Query: 178 IPK-IKAAQFDIVNHM----RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYI 232
           + K  +A++FD   ++     Q+TI+  L   + TGN+ I+RF+M R+G+TQVL+RLS+I
Sbjct: 399 LSKPSRASRFDFSQYLTTGDSQNTISVGLERTLSTGNFDIKRFRMHRKGMTQVLTRLSFI 458

Query: 233 SGLGMMTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTEN 292
             LG +T+I+ QFEK+RKVSGPRSLQ SQWGMLCP DTPEGE+CGLVKNLALMTH+TT+ 
Sbjct: 459 GSLGFITKISPQFEKSRKVSGPRSLQPSQWGMLCPCDTPEGESCGLVKNLALMTHVTTDE 518

Query: 293 DEKNMLKIMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAG 333
           +E  ++ + Y +G+  + + + EEL +P  +LV +NG++ G
Sbjct: 519 EEGPLVAMCYKLGVTDLEVLSAEELHTPDSFLVILNGLILG 559



 Score =  152 bits (383), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 77/148 (52%), Positives = 97/148 (65%), Gaps = 26/148 (17%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGV------------TTHLEIAPFT 735
           G + FDDF+ +G IEYLDVNE N++ IA+ ES     +            TTH+EI PFT
Sbjct: 629 GVRTFDDFIRDGLIEYLDVNEENNALIALYESEATTELDEGAEAAKIKADTTHIEIEPFT 688

Query: 736 LLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLM 795
           +LGV AG              L+PYPHHNQ+PRNTYQCAMGKQAMG I YNQ NR+DTL+
Sbjct: 689 ILGVVAG--------------LIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLNRMDTLL 734

Query: 796 YNLVYAQRPMVESKTIRITNFHKLPAGK 823
           Y LVY QRP++ ++TI +  + KL AG+
Sbjct: 735 YLLVYPQRPLLTTRTIELVGYDKLGAGQ 762



 Score = 85.1 bits (209), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/87 (47%), Positives = 57/87 (65%), Gaps = 2/87 (2%)

Query: 447 TYKKTPVDDARDF--LSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDY 504
           +Y   P  D R    L    +AH+PV +  F+ K  Y+ VM+RRM+ A+ + D +DD+DY
Sbjct: 304 SYGPPPEKDGRALYILRDLFLAHVPVRDNNFRQKCFYVGVMLRRMIEAMLNKDSMDDKDY 363

Query: 505 YGNKRLELAGSLLSLMFEDVFKRFNSE 531
            GNKRLEL+G L+SL+FED+FK   SE
Sbjct: 364 VGNKRLELSGQLMSLLFEDLFKTMLSE 390



 Score = 80.1 bits (196), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 47/115 (40%), Positives = 64/115 (55%), Gaps = 17/115 (14%)

Query: 303 NIGIEHIAMFNGE--ELSSPGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHE 360
           N+GI+ I   N     ++ P +YL F N            V +P I  + N + +  PH 
Sbjct: 58  NVGIKKIVHANCRIASVTDPSIYLRFKN----------VRVGEPSIM-NINISEEINPHM 106

Query: 361 CRLRDLTYSAPITVDIEYTRGSQ----RVVRSDLVIGRMPIMLQSSKCVLRNKTE 411
           CRL D+TY+API V+IEY  GS       V++D +IGRMPIML+S +CVL  K E
Sbjct: 107 CRLADMTYAAPIYVNIEYVHGSHGKKATSVKNDFIIGRMPIMLRSCRCVLHGKDE 161



 Score = 71.6 bits (174), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/59 (55%), Positives = 44/59 (74%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           DK++LV  FLK +GLVK H+DSF+YFINV IKK++ AN  I S  DP  YL++ ++ VG
Sbjct: 31  DKFQLVPEFLKVRGLVKQHLDSFNYFINVGIKKIVHANCRIASVTDPSIYLRFKNVRVG 89


>gi|189194954|ref|XP_001933815.1| DNA-directed RNA polymerase III subunit RPC2 [Pyrenophora
            tritici-repentis Pt-1C-BFP]
 gi|187979694|gb|EDU46320.1| DNA-directed RNA polymerase III subunit RPC2 [Pyrenophora
            tritici-repentis Pt-1C-BFP]
          Length = 1167

 Score =  285 bits (730), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 144/261 (55%), Positives = 174/261 (66%), Gaps = 23/261 (8%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAM                DTL+Y +VY Q+PMV+++TI +T 
Sbjct: 752  GLIPYPHHNQSPRNTYQCAM----------------DTLLYLMVYPQQPMVKTRTIELTK 795

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+AVMSYSGYDIEDALI+NKAS DRGFGRC V +     LK Y N T DR
Sbjct: 796  YDKLPAGQNATVAVMSYSGYDIEDALILNKASCDRGFGRCQVMKKHVTQLKTYANGTSDR 855

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKE 1092
            I    L+ D +     H+A+ +DGI   G +I      + KS+P   V      +  YK+
Sbjct: 856  INAGALDPDNKN----HQAIGKDGIAQVGARIEAGDAYLLKSIP---VDTAGPPSNTYKD 908

Query: 1093 VPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQ 1152
             P  YK    SY++K  V+ N     LIK+L RQTRRPE+GDKFSSRHGQKG  GLIV+Q
Sbjct: 909  KPEKYKNPDYSYIDKTCVTENEAGVTLIKLLFRQTRRPELGDKFSSRHGQKGTTGLIVQQ 968

Query: 1153 EDMPFNESGICPDIIMNPHGL 1173
            EDMPFN+ GICPDIIMNPHG 
Sbjct: 969  EDMPFNDQGICPDIIMNPHGF 989



 Score =  264 bits (675), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 120/191 (62%), Positives = 150/191 (78%)

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
            YK+ P  YK    SY++K  V+ N     LIK+L RQTRRPE+GDKFSSRHGQKG  GLI
Sbjct: 906  YKDKPEKYKNPDYSYIDKTCVTENEAGVTLIKLLFRQTRRPELGDKFSSRHGQKGTTGLI 965

Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
            V+QEDMPFN+ GICPDIIMNPHG+PSRMTVGK++ELL+GKAG++ G  + GTAFGG+ + 
Sbjct: 966  VQQEDMPFNDQGICPDIIMNPHGFPSRMTVGKMMELLSGKAGVLNGTLEYGTAFGGSTVE 1025

Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
            D+ + L+  G++Y GKD   SGITGEA + Y + GP+YYQKLKHMVQDK+H+R+RGPR +
Sbjct: 1026 DMSKILVDKGFSYTGKDYLTSGITGEAHQFYTFFGPIYYQKLKHMVQDKMHSRARGPRAI 1085

Query: 1362 LTRQPTGRRWK 1372
            LTRQPT  R +
Sbjct: 1086 LTRQPTEGRAR 1096



 Score =  198 bits (503), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 96/164 (58%), Positives = 127/164 (77%), Gaps = 3/164 (1%)

Query: 175 DKIIPK-IKAAQFDIVNH--MRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSY 231
           DK++ K ++A +FD  +H  + ++ IT  +  AI TGNW+++RFKM+R GVT VLSRLSY
Sbjct: 468 DKVLKKPVRAQEFDAFSHFSVHKNHITMGVERAIATGNWSLKRFKMDRAGVTHVLSRLSY 527

Query: 232 ISGLGMMTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTE 291
           I+ LGMMTRI+SQFEKTRKVSGPR+LQ SQ+GMLC SDTPEGEACGLVKNLALMTHITTE
Sbjct: 528 IAALGMMTRISSQFEKTRKVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTE 587

Query: 292 NDEKNMLKIMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAGIT 335
           +D+  + KI++ +G + I    GE++ + GVY + +NG    +T
Sbjct: 588 DDDDPVRKIVFMLGAQDICSLTGEDIHAEGVYSLCLNGTPIAVT 631



 Score =  126 bits (316), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 65/132 (49%), Positives = 83/132 (62%), Gaps = 31/132 (23%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKR 751
           F+DFL  G +EYLD NE ND++IA+ E+ I    TTHLEI PFT+LG  AG         
Sbjct: 703 FEDFLTRGLVEYLDTNEENDTNIALKETDINQH-TTHLEIEPFTILGAVAG--------- 752

Query: 752 FHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTI 811
                L+PYPHHNQ+PRNTYQCAM                DTL+Y +VY Q+PMV+++TI
Sbjct: 753 -----LIPYPHHNQSPRNTYQCAM----------------DTLLYLMVYPQQPMVKTRTI 791

Query: 812 RITNFHKLPAGK 823
            +T + KLPAG+
Sbjct: 792 ELTKYDKLPAGQ 803



 Score = 94.0 bits (232), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 40/79 (50%), Positives = 61/79 (77%)

Query: 455 DARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAG 514
           +A + LS+  + H+PV    ++ KA+Y+A+M RR+++A+ +P ++DDRDY GNKRLEL+G
Sbjct: 386 EAIECLSNVVLPHVPVEGTNYRPKALYVALMARRVLMAMQNPKLVDDRDYVGNKRLELSG 445

Query: 515 SLLSLMFEDVFKRFNSELK 533
            +LSL+FED FKRFN + K
Sbjct: 446 QMLSLLFEDHFKRFNHDFK 464



 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/66 (57%), Positives = 52/66 (78%), Gaps = 1/66 (1%)

Query: 347 EESFNYTRQT-TPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCV 405
           E+  ++ + T TP+ECRLRD+TY+API VDI YTRG+ +V R+ + IGRMPIML+S+KCV
Sbjct: 164 EDDLDHHKSTVTPNECRLRDMTYAAPIVVDIIYTRGNAKVKRTGIKIGRMPIMLKSNKCV 223

Query: 406 LRNKTE 411
           L  K +
Sbjct: 224 LAGKND 229



 Score = 76.3 bits (186), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/59 (54%), Positives = 46/59 (77%)

Query: 113 RDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           RDKW L+ +FLK KGLVK H+DS+++F++VE+KK+++ N  + SD DP F L+Y DI V
Sbjct: 98  RDKWNLLPAFLKTKGLVKQHVDSYNHFVDVELKKIIKVNRFVRSDFDPKFLLEYTDIRV 156


>gi|47156951|gb|AAT12334.1| DNA-directed RNA polymerase III subunit 2 130KDa subunit [Antonospora
            locustae]
          Length = 1014

 Score =  285 bits (728), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 141/261 (54%), Positives = 175/261 (67%), Gaps = 23/261 (8%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG +  NQ  R DTL+  LVY Q+P+V +K   I N
Sbjct: 582  GLIPYPHHNQSPRNTYQCAMGKQAMGFVALNQYRRFDTLLNLLVYPQKPLVSTKITDIVN 641

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQN  +AVM+Y+GYDIEDALI+NK +LDRGFGRC VYR+ K  LK+Y N   DR
Sbjct: 642  FEKLPAGQNGMVAVMAYAGYDIEDALIINKGALDRGFGRCEVYRSYKHSLKRYSNGMCDR 701

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKE 1092
            I G            +H     DG+  PGE++ +    V K  PT           ++K 
Sbjct: 702  ISGS-----------KH----SDGVRGPGERVFDGDFFVYKESPT--------EDADFKF 738

Query: 1093 VPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQ 1152
                YK   PS ++KV+V+ + ED F++K  LRQ R+PE+GDKFSSRHGQKGVIGL+V +
Sbjct: 739  SGELYKNLSPSVVDKVIVARSGEDQFMVKTCLRQVRQPEVGDKFSSRHGQKGVIGLVVPE 798

Query: 1153 EDMPFNESGICPDIIMNPHGL 1173
             D+PF+E G  PDIIMNPHG 
Sbjct: 799  TDLPFSEDGQVPDIIMNPHGF 819



 Score =  242 bits (617), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 120/226 (53%), Positives = 157/226 (69%), Gaps = 18/226 (7%)

Query: 1160 SGICPDIIMNPH--GLKG-CDRITE-----YKEVPVS----------YKGSVPSYLEKVL 1201
            +G+C  I  + H  G++G  +R+ +     YKE P            YK   PS ++KV+
Sbjct: 696  NGMCDRISGSKHSDGVRGPGERVFDGDFFVYKESPTEDADFKFSGELYKNLSPSVVDKVI 755

Query: 1202 VSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMN 1261
            V+ + ED F++K  LRQ R+PE+GDKFSSRHGQKGVIGL+V + D+PF+E G  PDIIMN
Sbjct: 756  VARSGEDQFMVKTCLRQVRQPEVGDKFSSRHGQKGVIGLVVPETDLPFSEDGQVPDIIMN 815

Query: 1262 PHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFY 1321
            PHG+PSRMTVGK+IEL++GKA +  G   + T F      D+   LI+HGY+Y GKD F 
Sbjct: 816  PHGFPSRMTVGKIIELISGKAAVFTGRQSDATVFREDITEDLSHILIKHGYSYCGKDTFT 875

Query: 1322 SGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPT 1367
            +GITG+  E Y++ GPVYYQ+LKHMV DK+HARSRGPR +LTRQPT
Sbjct: 876  NGITGDVYEGYVFFGPVYYQRLKHMVADKMHARSRGPRAMLTRQPT 921



 Score =  179 bits (454), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 84/176 (47%), Positives = 124/176 (70%), Gaps = 3/176 (1%)

Query: 175 DKIIPKIKAAQ-FDIVN--HMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSY 231
           DK++ K +  Q  D +   +++ + I+N+   AI TGNWT+RRF+MER GVTQVLSRLSY
Sbjct: 298 DKVLSKSQRTQDLDALTFLNLQVNLISNSFVRAISTGNWTVRRFRMERAGVTQVLSRLSY 357

Query: 232 ISGLGMMTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTE 291
           I+ +G M +I SQFEKTRK+SGPRSL  S WGMLCP+DTPEGE+CGLVKNLA++  ITT+
Sbjct: 358 IAMIGSMAKIQSQFEKTRKISGPRSLHTSSWGMLCPADTPEGESCGLVKNLAILAEITTD 417

Query: 292 NDEKNMLKIMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAGITCHHKEVCKPEIE 347
             + ++ ++++ +G+      +G +  S   YL+F+NG + GI  ++  + +  +E
Sbjct: 418 VPQSDVEQLLFQLGVRDFRTCSGIDFYSKHSYLIFLNGTIVGICYNNNTLVRKFVE 473



 Score =  144 bits (363), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 72/135 (53%), Positives = 89/135 (65%), Gaps = 15/135 (11%)

Query: 689 FKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQY 748
           +K  DD   EGK+E+LDVNE N++ IA+ ES I    TTHLEI  +++LG  AG      
Sbjct: 530 YKNPDDLFKEGKVEFLDVNEENNTKIALRESNICRS-TTHLEICEYSILGCVAG------ 582

Query: 749 NKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVES 808
                   L+PYPHHNQ+PRNTYQCAMGKQAMG +  NQ  R DTL+  LVY Q+P+V +
Sbjct: 583 --------LIPYPHHNQSPRNTYQCAMGKQAMGFVALNQYRRFDTLLNLLVYPQKPLVST 634

Query: 809 KTIRITNFHKLPAGK 823
           K   I NF KLPAG+
Sbjct: 635 KITDIVNFEKLPAGQ 649



 Score = 77.8 bits (190), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 38/83 (45%), Positives = 57/83 (68%)

Query: 453 VDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLEL 512
           +D+AR  L    + +IP   +  + KA+ +A+MIR ++ A  +   +DD D+ GNKR EL
Sbjct: 214 IDEARTILYEVVLPNIPNDGIDMRRKAITVAIMIRVLLQAELNMISMDDIDFLGNKRFEL 273

Query: 513 AGSLLSLMFEDVFKRFNSELKET 535
           AG+LLS++FED F RFNSELK++
Sbjct: 274 AGNLLSILFEDTFLRFNSELKKS 296



 Score = 61.6 bits (148), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/65 (44%), Positives = 41/65 (63%)

Query: 353 TRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKTEY 412
           T    P ECRLRDLTY   I VDIEYT+  + +++ ++ IG++PIML+S  C L  K + 
Sbjct: 3   TIDVLPEECRLRDLTYCGNIYVDIEYTKHRKVIIKKNVFIGKVPIMLRSMLCHLEEKRDD 62

Query: 413 TSSSR 417
             + R
Sbjct: 63  CETVR 67


>gi|237833217|ref|XP_002365906.1| DNA-directed RNA polymerase III subunit, putative [Toxoplasma gondii
            ME49]
 gi|211963570|gb|EEA98765.1| DNA-directed RNA polymerase III subunit, putative [Toxoplasma gondii
            ME49]
          Length = 1332

 Score =  284 bits (726), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 141/286 (49%), Positives = 188/286 (65%), Gaps = 25/286 (8%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+ +P+HNQ+PRNTYQCAMGKQAMG I YNQ NR DTL+Y LVY Q+P+ +S+T+ + +
Sbjct: 850  GLIAFPNHNQSPRNTYQCAMGKQAMGAIAYNQFNRCDTLLYLLVYPQKPLCKSRTLDLVH 909

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F +LPAGQNA++A+MS+SGYDIEDA+++N+ ++DRGFGRC   R     LK+Y N + DR
Sbjct: 910  FEQLPAGQNASVAIMSFSGYDIEDAIVLNRGAVDRGFGRCFALRRYSVELKKYFNGSTDR 969

Query: 1033 ILGPLLEADT------------RKPVY---------RHRALDQDGIVAPGEQICERQVLV 1071
               P +   +            RK  +         R  AL+ DG+V  GE + E QV V
Sbjct: 970  TFPPPVAQASGPGSGKAASGLHRKSFFPGGRGAVSRRFEALEDDGVVRVGELLEEDQVYV 1029

Query: 1072 NKSMPTISVSAIS----MATPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQT 1127
            +K  PT +   +S    +    Y      YK  VPSY+E+V+ + NS+     K+++RQT
Sbjct: 1030 HKFSPTNTREHVSDPLQLDNSLYAPSFARYKTVVPSYVERVVCTDNSDGCRTYKVMMRQT 1089

Query: 1128 RRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            R PE+GDKFSSRHGQKGV+GLI   ED+PF ESG CPD+IMNPHG 
Sbjct: 1090 RLPELGDKFSSRHGQKGVVGLIAPAEDLPFAESGWCPDLIMNPHGF 1135



 Score =  252 bits (643), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 116/184 (63%), Positives = 145/184 (78%)

Query: 1189 YKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMP 1248
            YK  VPSY+E+V+ + NS+     K+++RQTR PE+GDKFSSRHGQKGV+GLI   ED+P
Sbjct: 1059 YKTVVPSYVERVVCTDNSDGCRTYKVMMRQTRLPELGDKFSSRHGQKGVVGLIAPAEDLP 1118

Query: 1249 FNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELI 1308
            F ESG CPD+IMNPHG+PSRMTVGK++EL+AGK+ L  G  + GTAFGG  +  + E L 
Sbjct: 1119 FAESGWCPDLIMNPHGFPSRMTVGKMMELIAGKSALQVGACQYGTAFGGVGVETLGEILA 1178

Query: 1309 RHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTG 1368
             HG++Y GK+   SGITGEAL+ Y+++GP+YYQKLKHMVQDKIHAR RGPR +LTRQPT 
Sbjct: 1179 AHGFHYSGKEYLTSGITGEALQTYVFAGPIYYQKLKHMVQDKIHARGRGPRQLLTRQPTE 1238

Query: 1369 RRWK 1372
             R K
Sbjct: 1239 GRAK 1242



 Score =  197 bits (502), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 91/148 (61%), Positives = 112/148 (75%)

Query: 187 DIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFE 246
           D   ++  D IT  +  A+ TGNWTI+RF+MER GV+QVLSRLSYI+ LGMMTRINSQFE
Sbjct: 581 DCFRNLPTDIITRGMQTALSTGNWTIKRFRMERSGVSQVLSRLSYIATLGMMTRINSQFE 640

Query: 247 KTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGI 306
           K RKVSGPR+LQ SQWGMLCP DTPEGE+CGLVKNLAL+TH+TT+ D   +  + + +G+
Sbjct: 641 KGRKVSGPRALQPSQWGMLCPCDTPEGESCGLVKNLALVTHVTTDEDPTPISSLAFCLGV 700

Query: 307 EHIAMFNGEELSSPGVYLVFVNGILAGI 334
           E     +GEEL   G YLV +NG L G+
Sbjct: 701 EDADAISGEELHDRGTYLVMLNGALLGV 728



 Score =  135 bits (341), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 74/150 (49%), Positives = 93/150 (62%), Gaps = 18/150 (12%)

Query: 677 RPTFLNMHQFL---GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAP 733
           RP  L  H      G   F D L    +E++DVNE N+  IA+ E  I    TTHLEI P
Sbjct: 783 RPRLLPTHMAQLENGEMCFMDLLRSSILEWIDVNEENNLLIALREEDIT-AETTHLEIDP 841

Query: 734 FTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDT 793
            TLLGV AG              L+ +P+HNQ+PRNTYQCAMGKQAMG I YNQ NR DT
Sbjct: 842 LTLLGVVAG--------------LIAFPNHNQSPRNTYQCAMGKQAMGAIAYNQFNRCDT 887

Query: 794 LMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
           L+Y LVY Q+P+ +S+T+ + +F +LPAG+
Sbjct: 888 LLYLLVYPQKPLCKSRTLDLVHFEQLPAGQ 917



 Score = 98.6 bits (244), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 45/85 (52%), Positives = 62/85 (72%)

Query: 450 KTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKR 509
           K+ VD+A D L    ++HI      F+ K  +L +MIRR++ A SDP ++DD+DYYGNKR
Sbjct: 467 KSVVDEAVDVLHRVVLSHIETTGSDFRAKTRFLCLMIRRVLDAASDPSLMDDKDYYGNKR 526

Query: 510 LELAGSLLSLMFEDVFKRFNSELKE 534
           LELAG LLSL+FED+FKRF + +K+
Sbjct: 527 LELAGQLLSLLFEDLFKRFCTHVKK 551



 Score = 68.6 bits (166), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 79/151 (52%), Gaps = 25/151 (16%)

Query: 99  VTDETSKLKDSPEIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANAN--IYS 156
           V D  +  K    + DKW+L+ +F   KGLV  HI+S+++F++ E++ +++A +N  + S
Sbjct: 147 VADPYASGKPVCTVPDKWRLLPAFFAAKGLVHQHIESYNFFVDTELQNILRAPSNRLVKS 206

Query: 157 DVDPLFYLKYLDIHVG--------IADKIIPKIKAAQFDIVNHMRQDTITNA----LTAA 204
           DVDP F++++L+I VG        I  ++ P+I           R   IT A    + A 
Sbjct: 207 DVDPSFFIEFLNISVGTPRYEEGMILQRLTPRI----------CRTREITYAAPVFVDAE 256

Query: 205 IQTGNWTIRRFKMERQGVTQVL-SRLSYISG 234
              G+  IRR  +E   +  +L SR+  + G
Sbjct: 257 YSKGDEIIRRKHVEIGSIPVMLRSRVCVLHG 287



 Score = 61.2 bits (147), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 43/73 (58%), Gaps = 1/73 (1%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQ 400
           V  P  EE     R  TP  CR R++TY+AP+ VD EY++G + + R  + IG +P+ML+
Sbjct: 221 VGTPRYEEGMILQR-LTPRICRTREITYAAPVFVDAEYSKGDEIIRRKHVEIGSIPVMLR 279

Query: 401 SSKCVLRNKTEYT 413
           S  CVL  K   T
Sbjct: 280 SRVCVLHGKDPQT 292


>gi|221508871|gb|EEE34440.1| DNA-directed RNA polymerase III subunit, putative [Toxoplasma gondii
            VEG]
          Length = 1324

 Score =  284 bits (726), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 141/286 (49%), Positives = 188/286 (65%), Gaps = 25/286 (8%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+ +P+HNQ+PRNTYQCAMGKQAMG I YNQ NR DTL+Y LVY Q+P+ +S+T+ + +
Sbjct: 842  GLIAFPNHNQSPRNTYQCAMGKQAMGAIAYNQFNRCDTLLYLLVYPQKPLCKSRTLDLVH 901

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F +LPAGQNA++A+MS+SGYDIEDA+++N+ ++DRGFGRC   R     LK+Y N + DR
Sbjct: 902  FEQLPAGQNASVAIMSFSGYDIEDAIVLNRGAVDRGFGRCFALRRYSVELKKYFNGSTDR 961

Query: 1033 ILGPLLEADT------------RKPVY---------RHRALDQDGIVAPGEQICERQVLV 1071
               P +   +            RK  +         R  AL+ DG+V  GE + E QV V
Sbjct: 962  TFPPPVAQASGPGSGKAASGLHRKSFFPGGRGAVSRRFEALEDDGVVRVGELLEEDQVYV 1021

Query: 1072 NKSMPTISVSAIS----MATPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQT 1127
            +K  PT +   +S    +    Y      YK  VPSY+E+V+ + NS+     K+++RQT
Sbjct: 1022 HKFSPTNTREHVSDPLQLDNSLYAPSFARYKTVVPSYVERVVCTDNSDGCRTYKVMMRQT 1081

Query: 1128 RRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            R PE+GDKFSSRHGQKGV+GLI   ED+PF ESG CPD+IMNPHG 
Sbjct: 1082 RLPELGDKFSSRHGQKGVVGLIAPAEDLPFAESGWCPDLIMNPHGF 1127



 Score =  252 bits (643), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 116/184 (63%), Positives = 145/184 (78%)

Query: 1189 YKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMP 1248
            YK  VPSY+E+V+ + NS+     K+++RQTR PE+GDKFSSRHGQKGV+GLI   ED+P
Sbjct: 1051 YKTVVPSYVERVVCTDNSDGCRTYKVMMRQTRLPELGDKFSSRHGQKGVVGLIAPAEDLP 1110

Query: 1249 FNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELI 1308
            F ESG CPD+IMNPHG+PSRMTVGK++EL+AGK+ L  G  + GTAFGG  +  + E L 
Sbjct: 1111 FAESGWCPDLIMNPHGFPSRMTVGKMMELIAGKSALQVGACQYGTAFGGVGVETLGEILA 1170

Query: 1309 RHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTG 1368
             HG++Y GK+   SGITGEAL+ Y+++GP+YYQKLKHMVQDKIHAR RGPR +LTRQPT 
Sbjct: 1171 AHGFHYSGKEYLTSGITGEALQTYVFAGPIYYQKLKHMVQDKIHARGRGPRQLLTRQPTE 1230

Query: 1369 RRWK 1372
             R K
Sbjct: 1231 GRAK 1234



 Score =  197 bits (502), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 91/148 (61%), Positives = 112/148 (75%)

Query: 187 DIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFE 246
           D   ++  D IT  +  A+ TGNWTI+RF+MER GV+QVLSRLSYI+ LGMMTRINSQFE
Sbjct: 573 DCFRNLPTDIITRGMQTALSTGNWTIKRFRMERSGVSQVLSRLSYIATLGMMTRINSQFE 632

Query: 247 KTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGI 306
           K RKVSGPR+LQ SQWGMLCP DTPEGE+CGLVKNLAL+TH+TT+ D   +  + + +G+
Sbjct: 633 KGRKVSGPRALQPSQWGMLCPCDTPEGESCGLVKNLALVTHVTTDEDPTPISSLAFCLGV 692

Query: 307 EHIAMFNGEELSSPGVYLVFVNGILAGI 334
           E     +GEEL   G YLV +NG L G+
Sbjct: 693 EDADAISGEELHDRGTYLVMLNGALLGV 720



 Score =  135 bits (341), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 74/150 (49%), Positives = 93/150 (62%), Gaps = 18/150 (12%)

Query: 677 RPTFLNMHQFL---GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAP 733
           RP  L  H      G   F D L    +E++DVNE N+  IA+ E  I    TTHLEI P
Sbjct: 775 RPRLLPTHMAQLENGEMCFMDLLRSSILEWIDVNEENNLLIALREEDI-TAETTHLEIDP 833

Query: 734 FTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDT 793
            TLLGV AG              L+ +P+HNQ+PRNTYQCAMGKQAMG I YNQ NR DT
Sbjct: 834 LTLLGVVAG--------------LIAFPNHNQSPRNTYQCAMGKQAMGAIAYNQFNRCDT 879

Query: 794 LMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
           L+Y LVY Q+P+ +S+T+ + +F +LPAG+
Sbjct: 880 LLYLLVYPQKPLCKSRTLDLVHFEQLPAGQ 909



 Score = 98.6 bits (244), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 45/85 (52%), Positives = 62/85 (72%)

Query: 450 KTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKR 509
           K+ VD+A D L    ++HI      F+ K  +L +MIRR++ A SDP ++DD+DYYGNKR
Sbjct: 459 KSVVDEAVDVLHRVVLSHIETTGSDFRAKTRFLCLMIRRVLDAASDPSLMDDKDYYGNKR 518

Query: 510 LELAGSLLSLMFEDVFKRFNSELKE 534
           LELAG LLSL+FED+FKRF + +K+
Sbjct: 519 LELAGQLLSLLFEDLFKRFCTHVKK 543



 Score = 68.6 bits (166), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 79/151 (52%), Gaps = 25/151 (16%)

Query: 99  VTDETSKLKDSPEIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANAN--IYS 156
           V D  +  K    + DKW+L+ +F   KGLV  HI+S+++F++ E++ +++A +N  + S
Sbjct: 139 VADPYASGKPVCTVPDKWRLLPAFFAAKGLVHQHIESYNFFVDTELQNILRAPSNRLVKS 198

Query: 157 DVDPLFYLKYLDIHVG--------IADKIIPKIKAAQFDIVNHMRQDTITNA----LTAA 204
           DVDP F++++L+I VG        I  ++ P+I           R   IT A    + A 
Sbjct: 199 DVDPSFFIEFLNISVGTPRYEEGMILQRLTPRI----------CRTREITYAAPVFVDAE 248

Query: 205 IQTGNWTIRRFKMERQGVTQVL-SRLSYISG 234
              G+  IRR  +E   +  +L SR+  + G
Sbjct: 249 YSKGDEIIRRKHVEIGSIPVMLRSRVCVLHG 279



 Score = 61.2 bits (147), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 43/73 (58%), Gaps = 1/73 (1%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQ 400
           V  P  EE     R  TP  CR R++TY+AP+ VD EY++G + + R  + IG +P+ML+
Sbjct: 213 VGTPRYEEGMILQR-LTPRICRTREITYAAPVFVDAEYSKGDEIIRRKHVEIGSIPVMLR 271

Query: 401 SSKCVLRNKTEYT 413
           S  CVL  K   T
Sbjct: 272 SRVCVLHGKDPQT 284


>gi|221488368|gb|EEE26582.1| DNA-directed RNA polymerase III subunit, putative [Toxoplasma gondii
            GT1]
          Length = 1328

 Score =  284 bits (726), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 141/286 (49%), Positives = 188/286 (65%), Gaps = 25/286 (8%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+ +P+HNQ+PRNTYQCAMGKQAMG I YNQ NR DTL+Y LVY Q+P+ +S+T+ + +
Sbjct: 846  GLIAFPNHNQSPRNTYQCAMGKQAMGAIAYNQFNRCDTLLYLLVYPQKPLCKSRTLDLVH 905

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F +LPAGQNA++A+MS+SGYDIEDA+++N+ ++DRGFGRC   R     LK+Y N + DR
Sbjct: 906  FEQLPAGQNASVAIMSFSGYDIEDAIVLNRGAVDRGFGRCFALRRYSVELKKYFNGSTDR 965

Query: 1033 ILGPLLEADT------------RKPVY---------RHRALDQDGIVAPGEQICERQVLV 1071
               P +   +            RK  +         R  AL+ DG+V  GE + E QV V
Sbjct: 966  TFPPPVAQASGPGSGKAASGLHRKSFFPGGRGAVSRRFEALEDDGVVRVGELLEEDQVYV 1025

Query: 1072 NKSMPTISVSAIS----MATPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQT 1127
            +K  PT +   +S    +    Y      YK  VPSY+E+V+ + NS+     K+++RQT
Sbjct: 1026 HKFSPTNTREHVSDPLQLDNSLYAPSFARYKTVVPSYVERVVCTDNSDGCRTYKVMMRQT 1085

Query: 1128 RRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            R PE+GDKFSSRHGQKGV+GLI   ED+PF ESG CPD+IMNPHG 
Sbjct: 1086 RLPELGDKFSSRHGQKGVVGLIAPAEDLPFAESGWCPDLIMNPHGF 1131



 Score =  252 bits (643), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 116/184 (63%), Positives = 145/184 (78%)

Query: 1189 YKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMP 1248
            YK  VPSY+E+V+ + NS+     K+++RQTR PE+GDKFSSRHGQKGV+GLI   ED+P
Sbjct: 1055 YKTVVPSYVERVVCTDNSDGCRTYKVMMRQTRLPELGDKFSSRHGQKGVVGLIAPAEDLP 1114

Query: 1249 FNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELI 1308
            F ESG CPD+IMNPHG+PSRMTVGK++EL+AGK+ L  G  + GTAFGG  +  + E L 
Sbjct: 1115 FAESGWCPDLIMNPHGFPSRMTVGKMMELIAGKSALQVGACQYGTAFGGVGVETLGEILA 1174

Query: 1309 RHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTG 1368
             HG++Y GK+   SGITGEAL+ Y+++GP+YYQKLKHMVQDKIHAR RGPR +LTRQPT 
Sbjct: 1175 AHGFHYSGKEYLTSGITGEALQTYVFAGPIYYQKLKHMVQDKIHARGRGPRQLLTRQPTE 1234

Query: 1369 RRWK 1372
             R K
Sbjct: 1235 GRAK 1238



 Score =  197 bits (502), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 91/148 (61%), Positives = 112/148 (75%)

Query: 187 DIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFE 246
           D   ++  D IT  +  A+ TGNWTI+RF+MER GV+QVLSRLSYI+ LGMMTRINSQFE
Sbjct: 577 DCFRNLPTDIITRGMQTALSTGNWTIKRFRMERSGVSQVLSRLSYIATLGMMTRINSQFE 636

Query: 247 KTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGI 306
           K RKVSGPR+LQ SQWGMLCP DTPEGE+CGLVKNLAL+TH+TT+ D   +  + + +G+
Sbjct: 637 KGRKVSGPRALQPSQWGMLCPCDTPEGESCGLVKNLALVTHVTTDEDPTPISSLAFCLGV 696

Query: 307 EHIAMFNGEELSSPGVYLVFVNGILAGI 334
           E     +GEEL   G YLV +NG L G+
Sbjct: 697 EDADAISGEELHDRGTYLVMLNGALLGV 724



 Score =  135 bits (341), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 74/150 (49%), Positives = 93/150 (62%), Gaps = 18/150 (12%)

Query: 677 RPTFLNMHQFL---GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAP 733
           RP  L  H      G   F D L    +E++DVNE N+  IA+ E  I    TTHLEI P
Sbjct: 779 RPRLLPTHMAQLENGEMCFMDLLRSSILEWIDVNEENNLLIALREEDI-TAETTHLEIDP 837

Query: 734 FTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDT 793
            TLLGV AG              L+ +P+HNQ+PRNTYQCAMGKQAMG I YNQ NR DT
Sbjct: 838 LTLLGVVAG--------------LIAFPNHNQSPRNTYQCAMGKQAMGAIAYNQFNRCDT 883

Query: 794 LMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
           L+Y LVY Q+P+ +S+T+ + +F +LPAG+
Sbjct: 884 LLYLLVYPQKPLCKSRTLDLVHFEQLPAGQ 913



 Score = 98.6 bits (244), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 45/85 (52%), Positives = 62/85 (72%)

Query: 450 KTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKR 509
           K+ VD+A D L    ++HI      F+ K  +L +MIRR++ A SDP ++DD+DYYGNKR
Sbjct: 463 KSVVDEAVDVLHRVVLSHIETTGSDFRAKTRFLCLMIRRVLDAASDPSLMDDKDYYGNKR 522

Query: 510 LELAGSLLSLMFEDVFKRFNSELKE 534
           LELAG LLSL+FED+FKRF + +K+
Sbjct: 523 LELAGQLLSLLFEDLFKRFCTHVKK 547



 Score = 68.6 bits (166), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 79/151 (52%), Gaps = 25/151 (16%)

Query: 99  VTDETSKLKDSPEIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANAN--IYS 156
           V D  +  K    + DKW+L+ +F   KGLV  HI+S+++F++ E++ +++A +N  + S
Sbjct: 143 VADPYASGKPVCTVPDKWRLLPAFFAAKGLVHQHIESYNFFVDTELQNILRAPSNRLVKS 202

Query: 157 DVDPLFYLKYLDIHVG--------IADKIIPKIKAAQFDIVNHMRQDTITNA----LTAA 204
           DVDP F++++L+I VG        I  ++ P+I           R   IT A    + A 
Sbjct: 203 DVDPSFFIEFLNISVGTPRYEEGMILQRLTPRI----------CRTREITYAAPVFVDAE 252

Query: 205 IQTGNWTIRRFKMERQGVTQVL-SRLSYISG 234
              G+  IRR  +E   +  +L SR+  + G
Sbjct: 253 YSKGDEIIRRKHVEIGSIPVMLRSRVCVLHG 283



 Score = 61.2 bits (147), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 43/73 (58%), Gaps = 1/73 (1%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQ 400
           V  P  EE     R  TP  CR R++TY+AP+ VD EY++G + + R  + IG +P+ML+
Sbjct: 217 VGTPRYEEGMILQR-LTPRICRTREITYAAPVFVDAEYSKGDEIIRRKHVEIGSIPVMLR 275

Query: 401 SSKCVLRNKTEYT 413
           S  CVL  K   T
Sbjct: 276 SRVCVLHGKDPQT 288


>gi|407405022|gb|EKF30242.1| DNA-directed RNA polymerase III subunit, putative [Trypanosoma cruzi
            marinkellei]
          Length = 1128

 Score =  283 bits (723), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 231/749 (30%), Positives = 354/749 (47%), Gaps = 146/749 (19%)

Query: 449  KKTPVDDARDFLSSTCIAHIPVINMR----FKMKAMYLAVMIRRMVLALSDPDMLDDRDY 504
            +K+  D+A +FL +  + HI    ++    F+ KA+Y+  M+RRM+ A  D  +LD+RD+
Sbjct: 304  QKSKADNAAEFLGNVLLCHIREGQVQRDWNFRHKALYVCFMVRRMIEASVDSSLLDERDF 363

Query: 505  YGNKRLELAGSLLSLMFEDVFKRFNSELKETNLSGVVNLVSGWWFELKYGNKIYIRSPSR 564
            YGNKR E  G+L+ L+FEDV                          LK  N++   +  +
Sbjct: 364  YGNKRFETTGTLMGLLFEDV--------------------------LKQFNRVVKTAMDQ 397

Query: 565  KLLAAGFSGPHSGRVRLMPEGPTILLNSCLR---SGGKAQHEALYNAVQRHATKCCTLNF 621
            +L     + P +  V+ + E    ++ S +R   S G+ + +  +N  ++  T+   L+ 
Sbjct: 398  QLSKKDTTKPFN--VKQLMESKLEVIQSGMRVALSSGRWELKR-FNMSRQGITQ--VLSR 452

Query: 622  LFFLGGGGILPSIQRQTTCLLTLILFSLNGDGKRGARNSQQY----CDCPDGYSSGCQPR 677
            L ++   G++       T L +    S    G R  + SQ      CD P+G S G    
Sbjct: 453  LSYIACIGMM-------TRLASSFEKSRKISGPRSLQPSQWGMVCPCDTPEGESCGLVKN 505

Query: 678  PTFLNMHQFLGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLL 737
               L+          DD         L V E       V     R  +  +      TL+
Sbjct: 506  FGILSQVTL----DMDDSFVRAAAHNLGVEE-------VDSISSREFLNYYTVFLNGTLI 554

Query: 738  GV-------CAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNR 790
            G+       C G+  L+ + R H       PH + A  +  +       +GC G     R
Sbjct: 555  GIHRYPNRLCRGVRALRRSGRLH-------PHVSIAINDRQKSVQ----IGCDG----GR 599

Query: 791  IDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQISPGGAEELTARESCHEVLKIISFS 850
            I   +Y +V   +P V S      +  +L AG+C I+   AE L         ++ I  +
Sbjct: 600  I-VRLYIVVNNAKPAVSS-----AHLDQLSAGQCSINDFLAEGL---------VEFIDVN 644

Query: 851  ISVAVFDSVWLGDVKQGVHQLSEEKEPRLLRKFQYFDVRTPYRLRRLLCWECVLYNKRFH 910
             +     +V+  D++     L  E                P  L  ++            
Sbjct: 645  EANDCLIAVYPRDIETYTTHLEVE----------------PLSLLGVVA----------- 677

Query: 911  SPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRI 970
              G++P+PHHNQ+ RNT+Q AMGKQA+G I YNQ  R DT++    Y QRP+  +K + +
Sbjct: 678  --GIIPFPHHNQSARNTFQSAMGKQALGTIAYNQYIRTDTVLMLGAYPQRPLCRTKAMDL 735

Query: 971  TNFHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTH 1030
            T++ KL AG NA + VMSYSGYDIEDA + N+ SLDRG+GRC+V R  +  L++ PN  +
Sbjct: 736  THYEKLGAGINAMVCVMSYSGYDIEDAQVYNRCSLDRGYGRCVVLRKHEVDLERLPNGEY 795

Query: 1031 DRILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEY 1090
            + IL P   A       + +AL+ DGI + G  + +  +LVNK  P  S+        E 
Sbjct: 796  EIILPPDSNAG------KCKALNSDGIASKGAIVRQFDILVNKYTPVASL--------EP 841

Query: 1091 KEVPVSYKGSVPSYLEKVLV--SSNSEDAF----LIKMLLRQTRRPEIGDKFSSRHGQKG 1144
            +  P+ YK   P+ ++ V++    +SE +      IK++ R+ R PE GDKFSSRHGQKG
Sbjct: 842  RPNPLVYKYPQPAVVDHVVILPPGDSERSMDVEQKIKVITREVRVPEPGDKFSSRHGQKG 901

Query: 1145 VIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            V+GLI +  +MPFNE GI PD+IMNPHG 
Sbjct: 902  VVGLITDGVNMPFNEKGISPDMIMNPHGF 930



 Score =  230 bits (586), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 107/193 (55%), Positives = 145/193 (75%), Gaps = 6/193 (3%)

Query: 1186 PVSYKGSVPSYLEKVLV--SSNSEDAF----LIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1239
            P+ YK   P+ ++ V++    +SE +      IK++ R+ R PE GDKFSSRHGQKGV+G
Sbjct: 845  PLVYKYPQPAVVDHVVILPPGDSERSMDVEQKIKVITREVRVPEPGDKFSSRHGQKGVVG 904

Query: 1240 LIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTK 1299
            LI +  +MPFNE GI PD+IMNPHG+PSRMTVGKL+EL++ K   + G + +GTAFGG  
Sbjct: 905  LITDGVNMPFNEKGISPDMIMNPHGFPSRMTVGKLLELVSSKVSALTGTFGDGTAFGGEN 964

Query: 1300 LVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPR 1359
              D+  +L+R+G+NY GKD+FYSGITGE ++AY++ GP+YYQ+LKHMV DK+HAR+ GPR
Sbjct: 965  ADDLGMQLLRNGFNYHGKDVFYSGITGEIMQAYVFFGPIYYQRLKHMVTDKMHARATGPR 1024

Query: 1360 VVLTRQPTGRRWK 1372
             +LTRQPT  R +
Sbjct: 1025 SMLTRQPTEGRSR 1037



 Score =  162 bits (409), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 72/149 (48%), Positives = 104/149 (69%), Gaps = 2/149 (1%)

Query: 195 DTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVSGP 254
           + I + +  A+ +G W ++RF M RQG+TQVLSRLSYI+ +GMMTR+ S FEK+RK+SGP
Sbjct: 419 EVIQSGMRVALSSGRWELKRFNMSRQGITQVLSRLSYIACIGMMTRLASSFEKSRKISGP 478

Query: 255 RSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMFNG 314
           RSLQ SQWGM+CP DTPEGE+CGLVKN  +++ +T + D+  +    +N+G+E +   + 
Sbjct: 479 RSLQPSQWGMVCPCDTPEGESCGLVKNFGILSQVTLDMDDSFVRAAAHNLGVEEVDSISS 538

Query: 315 EELSSPGVYLVFVNGILAGITCHHKEVCK 343
            E  +   Y VF+NG L GI  +   +C+
Sbjct: 539 REFLN--YYTVFLNGTLIGIHRYPNRLCR 565



 Score = 64.3 bits (155), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/74 (45%), Positives = 45/74 (60%), Gaps = 4/74 (5%)

Query: 341 VCKP-EIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYT---RGSQRVVRSDLVIGRMP 396
           VC+P EI       +  +PHECR RDLTY   + VD+EYT   R  +  + +D+ IG +P
Sbjct: 75  VCQPREIVGKGQLPKAVSPHECRTRDLTYRGDMIVDVEYTSRDRNKRPCMETDIKIGTIP 134

Query: 397 IMLQSSKCVLRNKT 410
           IML+SS C L  KT
Sbjct: 135 IMLKSSSCNLFGKT 148



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 43/68 (63%), Gaps = 2/68 (2%)

Query: 115 KWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLM--QANANIYSDVDPLFYLKYLDIHVG 172
           K  L+ + +  KGL+  HI SFD+ INVE+K+++  ++N  I S +DP F ++Y +I V 
Sbjct: 17  KLALLPALIGMKGLLNHHIASFDHLINVELKRILLNESNREIKSSIDPDFSIRYTNIRVC 76

Query: 173 IADKIIPK 180
              +I+ K
Sbjct: 77  QPREIVGK 84


>gi|440799025|gb|ELR20086.1| DNAdirected RNA polymerase, beta subunit [Acanthamoeba castellanii
            str. Neff]
          Length = 1035

 Score =  283 bits (723), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 141/234 (60%), Positives = 174/234 (74%), Gaps = 12/234 (5%)

Query: 1141 GQKGVIGLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITE--YKEVPVSYKGSVPSYLE 1198
            G++   G +   +  P N +    D + NP      D I E  ++  P+SYKG   +Y++
Sbjct: 722  GERVEPGKVYINKQTPINTT----DTLANP------DNIPESAFRGSPMSYKGPTHAYID 771

Query: 1199 KVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDI 1258
            KVL++S++ED  LIK+L R TRRPE+GDKFSSRHGQKGV G+IV+Q DMPFN  GICPDI
Sbjct: 772  KVLLTSSAEDHCLIKVLFRSTRRPELGDKFSSRHGQKGVTGIIVQQPDMPFNHQGICPDI 831

Query: 1259 IMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKD 1318
            IMNPHG+PSRMTVGK+IELLAGKAG++EG Y EGTAF G K+  + + LI+HGY+Y GKD
Sbjct: 832  IMNPHGFPSRMTVGKMIELLAGKAGVLEGCYHEGTAFAGHKVDYLSKILIKHGYSYSGKD 891

Query: 1319 IFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
               SGITGE L AYI+ GPVYYQKLKHMV DK+HAR+RGPR VLTRQPT  R +
Sbjct: 892  QLTSGITGETLSAYIFFGPVYYQKLKHMVMDKMHARARGPRAVLTRQPTEGRAR 945



 Score =  232 bits (592), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 109/162 (67%), Positives = 137/162 (84%), Gaps = 1/162 (0%)

Query: 174 ADKIIPKI-KAAQFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYI 232
           AD ++ K  +AA+FDI+  +RQDTI+ AL+ AI TGNW ++RFKMER GVTQVLSRLS+I
Sbjct: 352 ADTVLAKQNRAAEFDILKCIRQDTISYALSRAISTGNWNLKRFKMERAGVTQVLSRLSFI 411

Query: 233 SGLGMMTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTEN 292
           + LGMMT+I+SQFEKTRKVSGPRSLQ SQWGMLCPSDTPEGE+CGLVKNLAL+THITT+ 
Sbjct: 412 AALGMMTKISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGESCGLVKNLALLTHITTDE 471

Query: 293 DEKNMLKIMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
           DE  + +I  N+G+E +A+ +GEE+ S G YLVF+NG+L G+
Sbjct: 472 DEAPIRRIALNLGVEDMALLSGEEMHSAGNYLVFMNGMLLGV 513



 Score =  218 bits (556), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 105/191 (54%), Positives = 139/191 (72%), Gaps = 10/191 (5%)

Query: 989  YSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRILGPLLEADTRKPVYR 1048
            YSGYDIEDAL++N+AS+DRGFGRC+V + +   +K+YPNQT DRI+GP  E D  +   R
Sbjct: 652  YSGYDIEDALVLNRASVDRGFGRCIVLKKTTATIKKYPNQTFDRIVGPPPENDRGQK--R 709

Query: 1049 HRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPE------YKEVPVSYKGSVP 1102
               LD DGI +PGE++   +V +NK  P  +    ++A P+      ++  P+SYKG   
Sbjct: 710  FDCLDVDGIASPGERVEPGKVYINKQTPINTTD--TLANPDNIPESAFRGSPMSYKGPTH 767

Query: 1103 SYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGI 1162
            +Y++KVL++S++ED  LIK+L R TRRPE+GDKFSSRHGQKGV G+IV+Q DMPFN  GI
Sbjct: 768  AYIDKVLLTSSAEDHCLIKVLFRSTRRPELGDKFSSRHGQKGVTGIIVQQPDMPFNHQGI 827

Query: 1163 CPDIIMNPHGL 1173
            CPDIIMNPHG 
Sbjct: 828  CPDIIMNPHGF 838



 Score =  115 bits (287), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 48/80 (60%), Positives = 68/80 (85%)

Query: 454 DDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELA 513
           ++AR  L+S  ++H+PV+N  F++K +Y+ +MIRR++LA+ DP  +DD+DYYGNKRLELA
Sbjct: 270 EEARHILASVVLSHVPVVNYDFRVKGIYVGLMIRRILLAMRDPSTMDDKDYYGNKRLELA 329

Query: 514 GSLLSLMFEDVFKRFNSELK 533
           GSLLSL+FED FK+FN+ELK
Sbjct: 330 GSLLSLLFEDTFKKFNAELK 349



 Score = 97.1 bits (240), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 48/85 (56%), Positives = 57/85 (67%), Gaps = 15/85 (17%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           GF+ FDDFL EG+IE+LDVNE N+  +A+SE  I    TTHLEI P T+LGVCA      
Sbjct: 582 GFRTFDDFLKEGRIEFLDVNEENNCFLALSEKEITMS-TTHLEIDPLTILGVCA------ 634

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQ 772
                   GL+PYPHHNQ+PRNTY 
Sbjct: 635 --------GLIPYPHHNQSPRNTYH 651



 Score = 92.0 bits (227), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/71 (61%), Positives = 53/71 (74%), Gaps = 1/71 (1%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQ 400
           + +P IEE        TP  CRLRD+TYSAPI+VDIEYTRG Q V+R+ +VIGRMPIML+
Sbjct: 83  IGEPTIEEDL-VPVAVTPQHCRLRDITYSAPISVDIEYTRGKQIVIRNGIVIGRMPIMLK 141

Query: 401 SSKCVLRNKTE 411
           SSKC+L  K E
Sbjct: 142 SSKCILTGKNE 152



 Score = 83.2 bits (204), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 37/71 (52%), Positives = 55/71 (77%), Gaps = 3/71 (4%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           + DKWKL+ +FLK +GLVK HIDS+DYFINVEIKK+++ANA +  D D  ++L+Y +I++
Sbjct: 24  VEDKWKLLPAFLKVRGLVKQHIDSYDYFINVEIKKVLEANALVQCDEDTTWFLRYKNIYI 83

Query: 172 G---IADKIIP 179
           G   I + ++P
Sbjct: 84  GEPTIEEDLVP 94


>gi|389585547|dbj|GAB68277.1| DNA-directed RNA polymerase III subunit [Plasmodium cynomolgi strain
            B]
          Length = 1300

 Score =  281 bits (720), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 150/325 (46%), Positives = 192/325 (59%), Gaps = 66/325 (20%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYP+HNQ+PRNTYQCAMGKQA+G IGYNQ  R DTL+Y LVY Q+P+V+SKTI   N
Sbjct: 781  GLIPYPNHNQSPRNTYQCAMGKQAIGAIGYNQFVRCDTLLYLLVYPQKPLVKSKTIEFIN 840

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNA +AVMS+ GYDIEDA++MNK+S+DRGFGRC+  R     LK+Y N ++D 
Sbjct: 841  FEKLPAGQNAIVAVMSFCGYDIEDAIVMNKSSIDRGFGRCMSLRKHAVELKKYFNGSNDL 900

Query: 1033 IL-GPLL-------------EADTRKPVYRHRALDQDGIVAPGEQICER----------- 1067
            +L  PL              E   R+   + R   +D + A G+ I E            
Sbjct: 901  VLPSPLAISKLQQRQEKERQEKQERQRQEKQRQAQEDQLAATGQYIKEEGDHVENGTDTN 960

Query: 1068 ---------------------------------QVLVNKSMP------TISVSAISMATP 1088
                                             QV +NK  P         +S I +   
Sbjct: 961  GDEPKRFQNKEIKKYHALDVDGVVSIGYLLKEGQVYINKYSPRNVKDHVKDISKIDLN-- 1018

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
            + K   V YK   PSY++K++ + N+E   + K+++RQTR PE+GDKFSSRHGQKGV+GL
Sbjct: 1019 DLKSNEVKYKSVYPSYIDKIIFTENAEGLKIYKIIMRQTRLPELGDKFSSRHGQKGVVGL 1078

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            +V QEDMPF ESGICPD+IMNPHG 
Sbjct: 1079 LVNQEDMPFTESGICPDLIMNPHGF 1103



 Score =  256 bits (653), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 115/194 (59%), Positives = 151/194 (77%)

Query: 1179 ITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVI 1238
            + + K   V YK   PSY++K++ + N+E   + K+++RQTR PE+GDKFSSRHGQKGV+
Sbjct: 1017 LNDLKSNEVKYKSVYPSYIDKIIFTENAEGLKIYKIIMRQTRLPELGDKFSSRHGQKGVV 1076

Query: 1239 GLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGT 1298
            GL+V QEDMPF ESGICPD+IMNPHG+PSRMTVGKL+EL+A K+ +++G  K G+ F GT
Sbjct: 1077 GLLVNQEDMPFTESGICPDLIMNPHGFPSRMTVGKLLELVASKSAVLDGELKYGSIFSGT 1136

Query: 1299 KLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGP 1358
               ++   L ++G+N   K++ YSG+TGE LE YI+ GP+YYQKLKHMVQDKIHAR+RGP
Sbjct: 1137 PFEEMASILFKYGFNCSSKELLYSGLTGEPLETYIFMGPIYYQKLKHMVQDKIHARARGP 1196

Query: 1359 RVVLTRQPTGRRWK 1372
            R +LTRQPT  R K
Sbjct: 1197 RQLLTRQPTEGRSK 1210



 Score =  202 bits (513), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 101/217 (46%), Positives = 140/217 (64%), Gaps = 12/217 (5%)

Query: 130 KPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYL-----------KYLDIHVGIADKII 178
           K  +D  DY+ N  ++   Q  + ++ D+   FY            KY+  +     K  
Sbjct: 443 KNELDDKDYYGNKRLELAGQLISLLFEDLYKRFYFTLKKQIDQTLSKYMQSNYTSKLKYS 502

Query: 179 PKIKAAQFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMM 238
             I     D+   + +D IT  + AAI TGNW I+RFKME+ GV+QVLSRLS+I+ +GMM
Sbjct: 503 GNINETYPDVFRSLPKDIITRGMQAAISTGNWNIKRFKMEKSGVSQVLSRLSFIACIGMM 562

Query: 239 TRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTEND-EKNM 297
           TR+NSQFEK RKVSGPR+LQ SQWG+LCP DTPEGE+CGLVKNLALMTH+T +N+  +++
Sbjct: 563 TRLNSQFEKGRKVSGPRALQPSQWGVLCPCDTPEGESCGLVKNLALMTHVTNDNENNEHL 622

Query: 298 LKIMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
           ++I+Y +G+E      GEE+   G++ V  NGIL G+
Sbjct: 623 IEILYTLGVEDSDSLTGEEMYKEGIFFVIFNGILLGV 659



 Score =  147 bits (372), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 78/139 (56%), Positives = 93/139 (66%), Gaps = 15/139 (10%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G   F D L    IE++DVNE N+  IA++ES I    TTHLEI P T+LGV AG     
Sbjct: 728 GTINFFDLLKSSVIEWIDVNEQNNLLIALNESDISVN-TTHLEIDPLTILGVVAG----- 781

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYP+HNQ+PRNTYQCAMGKQA+G IGYNQ  R DTL+Y LVY Q+P+V+
Sbjct: 782 ---------LIPYPNHNQSPRNTYQCAMGKQAIGAIGYNQFVRCDTLLYLLVYPQKPLVK 832

Query: 808 SKTIRITNFHKLPAGKCQI 826
           SKTI   NF KLPAG+  I
Sbjct: 833 SKTIEFINFEKLPAGQNAI 851



 Score = 83.2 bits (204), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 49/122 (40%), Positives = 78/122 (63%), Gaps = 7/122 (5%)

Query: 440 LRQKRFQTYKKTPVDDARDFLSSTCIAHIPVIN-MRFKMKAMYLAVMIRRMVLALSDPDM 498
           +++K+ +  +K  +++  DFLS   ++HI   N   F+ KA  + +MIRR++ + ++ + 
Sbjct: 387 MKEKQVKN-EKDIIEEGLDFLSRVLLSHIQQKNKYDFRNKARCICLMIRRVLDSANNKNE 445

Query: 499 LDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELK---ETNLSGVVNLVSGWWFELKYGN 555
           LDD+DYYGNKRLELAG L+SL+FED++KRF   LK   +  LS  +   S +  +LKY  
Sbjct: 446 LDDKDYYGNKRLELAGQLISLLFEDLYKRFYFTLKKQIDQTLSKYMQ--SNYTSKLKYSG 503

Query: 556 KI 557
            I
Sbjct: 504 NI 505



 Score = 76.6 bits (187), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 35/69 (50%), Positives = 50/69 (72%), Gaps = 1/69 (1%)

Query: 343 KPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSS 402
           +P +EE+   T   TP  CR RDLTYSAPI VD+EY +GS  + ++++ IGR+P+ML+S 
Sbjct: 168 RPSVEENMIET-SLTPQICRQRDLTYSAPIYVDVEYVKGSNIIRKNNVEIGRLPVMLRSD 226

Query: 403 KCVLRNKTE 411
            C+L NK+E
Sbjct: 227 ICILHNKSE 235


>gi|407844014|gb|EKG01762.1| DNA-directed RNA polymerase III subunit, putative [Trypanosoma cruzi]
          Length = 1130

 Score =  281 bits (719), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 230/749 (30%), Positives = 354/749 (47%), Gaps = 146/749 (19%)

Query: 449  KKTPVDDARDFLSSTCIAHIPVINMR----FKMKAMYLAVMIRRMVLALSDPDMLDDRDY 504
            +K+  D+A +FL +  + HI    ++    F+ KA+Y+  M+RRM+ A  D  +LD+RD+
Sbjct: 304  QKSKADNAAEFLGNVLLCHIREGQVQRDWNFRHKALYVCFMVRRMIEASVDSSLLDERDF 363

Query: 505  YGNKRLELAGSLLSLMFEDVFKRFNSELKETNLSGVVNLVSGWWFELKYGNKIYIRSPSR 564
            YGNKR E  G+L+ L+FED+                          LK  N++   +  +
Sbjct: 364  YGNKRFETTGTLMGLLFEDL--------------------------LKQFNRVVKTAMDQ 397

Query: 565  KLLAAGFSGPHSGRVRLMPEGPTILLNSCLR---SGGKAQHEALYNAVQRHATKCCTLNF 621
            +L     + P +  V+ + E    ++ S +R   S G+ + +  +N  ++  T+   L+ 
Sbjct: 398  QLSKKDTTKPFN--VKQLMESKLEVIQSGMRVALSSGRWELKR-FNMSRQGITQ--VLSR 452

Query: 622  LFFLGGGGILPSIQRQTTCLLTLILFSLNGDGKRGARNSQQY----CDCPDGYSSGCQPR 677
            L ++   G++       T L +    S    G R  + SQ      CD P+G S G    
Sbjct: 453  LSYIACIGMM-------TRLASSFEKSRKISGPRSLQPSQWGMVCPCDTPEGESCGLVKN 505

Query: 678  PTFLNMHQFLGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLL 737
               L+          DD         L V E       V     R  +  +      TL+
Sbjct: 506  FGILSQVTL----DMDDSFVRAAAHNLGVEE-------VDSISSREFLNYYTVFLNGTLI 554

Query: 738  GV-------CAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNR 790
            G+       C G+  L+ + R H       PH + A  +  +       +GC G     R
Sbjct: 555  GIHRYPNRLCRGVRALRRSGRLH-------PHVSIAINDRQKSVQ----IGCDG----GR 599

Query: 791  IDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQISPGGAEELTARESCHEVLKIISFS 850
            I   +Y +V   +P V S      +  +L AG+C I+   AE L         ++ I  +
Sbjct: 600  I-VRLYIVVNHAKPAVTS-----AHLDQLSAGQCSINDFLAEGL---------VEFIDVN 644

Query: 851  ISVAVFDSVWLGDVKQGVHQLSEEKEPRLLRKFQYFDVRTPYRLRRLLCWECVLYNKRFH 910
             +     +V+  D++     L  E                P  L  ++            
Sbjct: 645  EANDCLIAVYPRDIETYTTHLEVE----------------PLSLLGVVA----------- 677

Query: 911  SPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRI 970
              G++P+PHHNQ+ RNT+Q AMGKQA+G I YNQ  R DT++    Y QRP+  +K + +
Sbjct: 678  --GIIPFPHHNQSARNTFQSAMGKQALGTIAYNQYIRTDTVLMVGAYPQRPLCRTKAMDL 735

Query: 971  TNFHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTH 1030
            T++ KL AG NA + VMSYSGYDIEDA + N+ SLDRG+GRC+V R  +  L++ PN  +
Sbjct: 736  THYEKLGAGINAMVCVMSYSGYDIEDAQVYNRCSLDRGYGRCVVLRKHEVDLERLPNGEY 795

Query: 1031 DRILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEY 1090
            + IL P   A       + +AL+ DGI + G  + +  +LVNK  P  S+        E 
Sbjct: 796  EIILPPDSNAG------KCKALNSDGIASKGAIVRQFDILVNKYTPVASL--------EP 841

Query: 1091 KEVPVSYKGSVPSYLEKVLV--SSNSEDAF----LIKMLLRQTRRPEIGDKFSSRHGQKG 1144
            +  P+ YK   P+ ++ V++    +SE +      IK++ R+ R PE GDKFSSRHGQKG
Sbjct: 842  RPNPLVYKYPQPAVVDHVVILPPGDSERSMDVEQKIKVITREVRVPEPGDKFSSRHGQKG 901

Query: 1145 VIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            V+GLI +  +MPFNE GI PD+IMNPHG 
Sbjct: 902  VVGLITDGVNMPFNEKGISPDMIMNPHGF 930



 Score =  229 bits (584), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 107/193 (55%), Positives = 144/193 (74%), Gaps = 6/193 (3%)

Query: 1186 PVSYKGSVPSYLEKVLV--SSNSEDAF----LIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1239
            P+ YK   P+ ++ V++    +SE +      IK++ R+ R PE GDKFSSRHGQKGV+G
Sbjct: 845  PLVYKYPQPAVVDHVVILPPGDSERSMDVEQKIKVITREVRVPEPGDKFSSRHGQKGVVG 904

Query: 1240 LIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTK 1299
            LI +  +MPFNE GI PD+IMNPHG+PSRMTVGKL+EL++ K   + G + +GTAFGG  
Sbjct: 905  LITDGVNMPFNEKGISPDMIMNPHGFPSRMTVGKLLELVSSKVSALTGTFGDGTAFGGDN 964

Query: 1300 LVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPR 1359
              D+   L+R+G+NY GKD+FYSGITGE ++AY++ GP+YYQ+LKHMV DK+HAR+ GPR
Sbjct: 965  AEDLGMHLLRNGFNYHGKDVFYSGITGEIMQAYVFFGPIYYQRLKHMVTDKMHARATGPR 1024

Query: 1360 VVLTRQPTGRRWK 1372
             +LTRQPT  R +
Sbjct: 1025 SMLTRQPTEGRSR 1037



 Score =  162 bits (409), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 72/149 (48%), Positives = 104/149 (69%), Gaps = 2/149 (1%)

Query: 195 DTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVSGP 254
           + I + +  A+ +G W ++RF M RQG+TQVLSRLSYI+ +GMMTR+ S FEK+RK+SGP
Sbjct: 419 EVIQSGMRVALSSGRWELKRFNMSRQGITQVLSRLSYIACIGMMTRLASSFEKSRKISGP 478

Query: 255 RSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMFNG 314
           RSLQ SQWGM+CP DTPEGE+CGLVKN  +++ +T + D+  +    +N+G+E +   + 
Sbjct: 479 RSLQPSQWGMVCPCDTPEGESCGLVKNFGILSQVTLDMDDSFVRAAAHNLGVEEVDSISS 538

Query: 315 EELSSPGVYLVFVNGILAGITCHHKEVCK 343
            E  +   Y VF+NG L GI  +   +C+
Sbjct: 539 REFLN--YYTVFLNGTLIGIHRYPNRLCR 565



 Score = 63.5 bits (153), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 34/74 (45%), Positives = 44/74 (59%), Gaps = 4/74 (5%)

Query: 341 VCKP-EIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYT---RGSQRVVRSDLVIGRMP 396
           VC+P EI       +  +PHECR RDLTY   + VD+EYT   R  +    +D+ IG +P
Sbjct: 75  VCQPREIVGKGQLPKVVSPHECRTRDLTYRGDMIVDVEYTSRDRNKRPCTETDIKIGTIP 134

Query: 397 IMLQSSKCVLRNKT 410
           IML+SS C L  KT
Sbjct: 135 IMLKSSSCNLFGKT 148



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 43/68 (63%), Gaps = 2/68 (2%)

Query: 115 KWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLM--QANANIYSDVDPLFYLKYLDIHVG 172
           K  L+ + +  KGL+  HI SFD+ INVE+K+++  ++N  I S +DP F ++Y +I V 
Sbjct: 17  KLALLPALIGMKGLLNHHIASFDHLINVELKRILLNESNREIKSSIDPDFSIRYTNIRVC 76

Query: 173 IADKIIPK 180
              +I+ K
Sbjct: 77  QPREIVGK 84


>gi|78190771|gb|ABB29707.1| RNA polymerase III second largest subunit [Aphrocallistes vastus]
          Length = 238

 Score =  281 bits (719), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 141/243 (58%), Positives = 178/243 (73%), Gaps = 14/243 (5%)

Query: 934  KQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGQNATIAVMSYSGYD 993
            KQ+MG I YN  NRIDTL+Y LVY Q P+V + T+ I NF KLPAGQNA +AVMSYSGYD
Sbjct: 1    KQSMGLIAYNYLNRIDTLLYMLVYPQAPLVXTHTMDIINFDKLPAGQNAIVAVMSYSGYD 60

Query: 994  IEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRILGPLLEAD-TRKPVYRHRAL 1052
            IEDA+++NKAS+DRG+ RC+VYR     +K+YPN+T D I GP L  + ++K +Y+H+ L
Sbjct: 61   IEDAIVLNKASVDRGYARCIVYRKFPTSIKRYPNRTMDIINGPTLADEISKKTIYQHQIL 120

Query: 1053 DQDGIVAPGEQICERQVLVNK-------SMPTISVSAISMATPEYKEVPVSYKG-SVPSY 1104
            DQDGI  PG ++  RQVLVN+         P  SVSAI+     +KE P++YK      Y
Sbjct: 121  DQDGIAMPGTRVKNRQVLVNRLVPEQITGAPVSSVSAIA-----HKESPLTYKSLHEDMY 175

Query: 1105 LEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICP 1164
            ++KV+++S  ED  L+K LLR+TR PE+GDKFSSRHGQKGV GLI  QEDMPF+ESGICP
Sbjct: 176  VDKVMLTSTGEDVMLVKALLRETRIPEVGDKFSSRHGQKGVCGLIANQEDMPFSESGICP 235

Query: 1165 DII 1167
            DII
Sbjct: 236  DII 238



 Score =  109 bits (273), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 51/79 (64%), Positives = 63/79 (79%), Gaps = 1/79 (1%)

Query: 1182 YKEVPVSYKG-SVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1240
            +KE P++YK      Y++KV+++S  ED  L+K LLR+TR PE+GDKFSSRHGQKGV GL
Sbjct: 160  HKESPLTYKSLHEDMYVDKVMLTSTGEDVMLVKALLRETRIPEVGDKFSSRHGQKGVCGL 219

Query: 1241 IVEQEDMPFNESGICPDII 1259
            I  QEDMPF+ESGICPDII
Sbjct: 220  IANQEDMPFSESGICPDII 238



 Score = 64.3 bits (155), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/50 (60%), Positives = 36/50 (72%)

Query: 777 KQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
           KQ+MG I YN  NRIDTL+Y LVY Q P+V + T+ I NF KLPAG+  I
Sbjct: 1   KQSMGLIAYNYLNRIDTLLYMLVYPQAPLVXTHTMDIINFDKLPAGQNAI 50


>gi|350583870|ref|XP_003481607.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like, partial
            [Sus scrofa]
          Length = 186

 Score =  280 bits (717), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 127/186 (68%), Positives = 160/186 (86%), Gaps = 4/186 (2%)

Query: 962  MVESKTIRITNFHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCV 1021
            MV++KTI +  F KLPAGQNAT+AVMSYSGYDIEDAL++NKASLDRGFGRCLVY+N+KC 
Sbjct: 1    MVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCT 60

Query: 1022 LKQYPNQTHDRILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS 1081
            LK+Y NQT D+++GP+L+A TRKP++RH  LD DGI +PGE++  +QVLVNKSMPT++  
Sbjct: 61   LKRYTNQTFDKVMGPVLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQI 120

Query: 1082 AISMAT----PEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFS 1137
             +  +     P+YK+VP++YKG+  SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFS
Sbjct: 121  PLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFS 180

Query: 1138 SRHGQK 1143
            SRHGQK
Sbjct: 181  SRHGQK 186



 Score =  101 bits (251), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 51/89 (57%), Positives = 65/89 (73%), Gaps = 2/89 (2%)

Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNS 1206
            G  VE + +  N+S   P +   P       +  +YK+VP++YKG+  SY+EKV++SSN+
Sbjct: 100  GEKVENKQVLVNKS--MPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNA 157

Query: 1207 EDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1235
            EDAFLIKMLLRQTRRPEIGDKFSSRHGQK
Sbjct: 158  EDAFLIKMLLRQTRRPEIGDKFSSRHGQK 186


>gi|401408519|ref|XP_003883708.1| DNA-directed RNA polymerase,related [Neospora caninum Liverpool]
 gi|325118125|emb|CBZ53676.1| DNA-directed RNA polymerase,related [Neospora caninum Liverpool]
          Length = 1366

 Score =  279 bits (714), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 139/291 (47%), Positives = 186/291 (63%), Gaps = 30/291 (10%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+ +P+HNQ+PRNTYQCAMGKQAMG I YNQ NR DTL+Y LVY Q+P+ +S+T+ + +
Sbjct: 879  GLIAFPNHNQSPRNTYQCAMGKQAMGAIAYNQFNRCDTLLYLLVYPQKPLCKSRTLDLVH 938

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F +LPAGQNA++A+MS+SGYDIEDA+++N+ ++DRGFGRC   R     LK+Y N + DR
Sbjct: 939  FEQLPAGQNASVAIMSFSGYDIEDAIVLNRGAVDRGFGRCFALRRYSVELKKYFNGSVDR 998

Query: 1033 I--------------------------LGPLLEADTRKPVYRHRALDQDGIVAPGEQICE 1066
                                       + P + +       R  AL+ DG+V  GE + E
Sbjct: 999  TFPPPVAQGPGQRSRSAALAPGGFPRKVSPAMASGKGAVSRRFEALEDDGVVRVGELLEE 1058

Query: 1067 RQVLVNKSMPTISVSAIS----MATPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKM 1122
             QV V+K  PT +   +S    +    Y      YK  VPSY+E+V+ + NS+     K+
Sbjct: 1059 DQVYVHKFSPTNTREHVSDPLQLDNAFYAPSFARYKTVVPSYVERVICTDNSDGCRTYKV 1118

Query: 1123 LLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            ++RQTR PE+GDKFSSRHGQKGV+GLI   ED+PF ESG CPD+IMNPHG 
Sbjct: 1119 IMRQTRLPELGDKFSSRHGQKGVVGLIAPAEDLPFAESGWCPDLIMNPHGF 1169



 Score =  253 bits (645), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 116/184 (63%), Positives = 145/184 (78%)

Query: 1189 YKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMP 1248
            YK  VPSY+E+V+ + NS+     K+++RQTR PE+GDKFSSRHGQKGV+GLI   ED+P
Sbjct: 1093 YKTVVPSYVERVICTDNSDGCRTYKVIMRQTRLPELGDKFSSRHGQKGVVGLIAPAEDLP 1152

Query: 1249 FNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELI 1308
            F ESG CPD+IMNPHG+PSRMTVGK++EL+AGK+ L  G  + GTAFGG  +  + E L 
Sbjct: 1153 FAESGWCPDLIMNPHGFPSRMTVGKMMELIAGKSALQIGACQYGTAFGGVSVDTLAEILA 1212

Query: 1309 RHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTG 1368
             HG++Y GK+   SGITGEAL+ Y+++GP+YYQKLKHMVQDKIHAR RGPR +LTRQPT 
Sbjct: 1213 SHGFHYSGKEYLTSGITGEALQTYVFAGPIYYQKLKHMVQDKIHARGRGPRQLLTRQPTE 1272

Query: 1369 RRWK 1372
             R K
Sbjct: 1273 GRAK 1276



 Score =  198 bits (503), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 91/148 (61%), Positives = 112/148 (75%)

Query: 187 DIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFE 246
           D   ++  D IT  +  A+ TGNWTI+RF+MER GV+QVLSRLSYI+ LGMMTRINSQFE
Sbjct: 610 DCFRNLPTDIITRGMQTALSTGNWTIKRFRMERSGVSQVLSRLSYIATLGMMTRINSQFE 669

Query: 247 KTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGI 306
           K RKVSGPR+LQ SQWGMLCP DTPEGE+CGLVKNLAL+TH+TT+ D   +  + + +G+
Sbjct: 670 KGRKVSGPRALQPSQWGMLCPCDTPEGESCGLVKNLALVTHVTTDEDPTPIASLAFCLGV 729

Query: 307 EHIAMFNGEELSSPGVYLVFVNGILAGI 334
           E     +GEEL   G YLV +NG L G+
Sbjct: 730 EDADAISGEELHDRGTYLVMLNGSLLGV 757



 Score =  134 bits (338), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 68/132 (51%), Positives = 88/132 (66%), Gaps = 15/132 (11%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKR 751
           F D L    +E++DVNE N+  IA+ E  I    +THLEI P TLLGV AG         
Sbjct: 830 FMDLLRSSILEWIDVNEENNLLIALREEDIT-AESTHLEIDPLTLLGVVAG--------- 879

Query: 752 FHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTI 811
                L+ +P+HNQ+PRNTYQCAMGKQAMG I YNQ NR DTL+Y LVY Q+P+ +S+T+
Sbjct: 880 -----LIAFPNHNQSPRNTYQCAMGKQAMGAIAYNQFNRCDTLLYLLVYPQKPLCKSRTL 934

Query: 812 RITNFHKLPAGK 823
            + +F +LPAG+
Sbjct: 935 DLVHFEQLPAGQ 946



 Score = 96.7 bits (239), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 43/85 (50%), Positives = 63/85 (74%)

Query: 450 KTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKR 509
           K+ +D+A D L    ++HI      F+ K+ +L +MIRR++ A +DP ++DD+DYYGNKR
Sbjct: 495 KSVIDEAVDVLHRVVLSHIETTGNDFRAKSRFLCLMIRRVLDAANDPSLMDDKDYYGNKR 554

Query: 510 LELAGSLLSLMFEDVFKRFNSELKE 534
           LELAG LLSL+FED+FKRF + +K+
Sbjct: 555 LELAGQLLSLLFEDLFKRFCTHVKK 579



 Score = 66.2 bits (160), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 66/121 (54%), Gaps = 24/121 (19%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANAN--IYSDVDPLFYLKYLDI 169
           + DKW+L+ +F   KGLV  HI+S+++F+  E++ +++A +N  + SD+DP F++++L+I
Sbjct: 187 VPDKWRLLPAFFAAKGLVHQHIESYNFFVTTELQNILRAPSNRLVKSDIDPSFFIEFLNI 246

Query: 170 HVG--------IADKIIPKIKAAQFDIVNHMRQDTITNA----LTAAIQTGNWTIRRFKM 217
            VG        I  ++ P+I           R   IT A    + A    G+  IRR  +
Sbjct: 247 SVGTPRYEEGMILQRLTPRI----------CRTREITYAAPVFVDAEYSKGDEIIRRKNV 296

Query: 218 E 218
           E
Sbjct: 297 E 297



 Score = 61.6 bits (148), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 1/69 (1%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQ 400
           V  P  EE     R  TP  CR R++TY+AP+ VD EY++G + + R ++ IG +P+ML+
Sbjct: 248 VGTPRYEEGMILQR-LTPRICRTREITYAAPVFVDAEYSKGDEIIRRKNVEIGSIPVMLR 306

Query: 401 SSKCVLRNK 409
           S  CVL  K
Sbjct: 307 SQVCVLHGK 315


>gi|385303538|gb|EIF47603.1| dna-directed rna polymerase iii 130 kda polypeptide, partial [Dekkera
            bruxellensis AWRI1499]
          Length = 312

 Score =  276 bits (706), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 121/193 (62%), Positives = 162/193 (83%)

Query: 1180 TEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1239
            + ++E P+ Y+G VPSY+++V+++    D  LIK+LLRQTRRPE+GDKFSSRHGQKGV G
Sbjct: 29   SSFQESPLVYRGPVPSYVDQVMLTVGDNDQALIKVLLRQTRRPELGDKFSSRHGQKGVCG 88

Query: 1240 LIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTK 1299
            +I++QEDMPF++ GICPD+IMNPHG+PSRMTVGK++EL++GKAG++ G ++ GT FGG+ 
Sbjct: 89   MIIKQEDMPFSDQGICPDMIMNPHGFPSRMTVGKMMELVSGKAGVLRGTFEYGTCFGGSD 148

Query: 1300 LVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPR 1359
            L ++ + L+  G+NY GKD+ YSG TGEAL+AYI+ GP+YYQKLKHMV DK+HAR+RGPR
Sbjct: 149  LSEMSKILVSKGFNYGGKDMLYSGTTGEALQAYIFFGPIYYQKLKHMVLDKMHARARGPR 208

Query: 1360 VVLTRQPTGRRWK 1372
             VLTRQPT  R +
Sbjct: 209  AVLTRQPTEGRAR 221



 Score =  132 bits (332), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 67/136 (49%), Positives = 89/136 (65%), Gaps = 18/136 (13%)

Query: 1086 ATPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV 1145
            AT  ++E P+ Y+G VPSY+++V+++    D  LIK+LLRQTRRPE+GDKFSSRHGQKGV
Sbjct: 27   ATSSFQESPLVYRGPVPSYVDQVMLTVGDNDQALIKVLLRQTRRPELGDKFSSRHGQKGV 86

Query: 1146 IGLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYK----------------EVPVSY 1189
             G+I++QEDMPF++ GICPD+IMNPHG     R+T  K                E    +
Sbjct: 87   CGMIIKQEDMPFSDQGICPDMIMNPHGFP--SRMTVGKMMELVSGKAGVLRGTFEYGTCF 144

Query: 1190 KGSVPSYLEKVLVSSN 1205
             GS  S + K+LVS  
Sbjct: 145  GGSDLSEMSKILVSKG 160


>gi|119719204|ref|YP_919699.1| DNA-directed RNA polymerase subunit B [Thermofilum pendens Hrk 5]
 gi|119524324|gb|ABL77696.1| DNA-directed RNA polymerase, subunit B' [Thermofilum pendens Hrk 5]
          Length = 1130

 Score =  275 bits (704), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 163/461 (35%), Positives = 244/461 (52%), Gaps = 93/461 (20%)

Query: 915  VPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFH 974
            +P+  +NQ+PRN+YQ AM KQ++G   YN + R+D  M+ + Y Q+P+V+++   +    
Sbjct: 661  IPFIEYNQSPRNSYQAAMAKQSLGIPHYNFKLRMDPRMHVMYYPQKPLVKTRIFDLLPLD 720

Query: 975  KLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRIL 1034
             LP G N  +AV++  GY+I+DA+++NKA+++RG  R + +R  +   ++YP    DR  
Sbjct: 721  NLPYGTNMVVAVLTGGGYNIQDAVVINKAAIERGMSRSVFFRTYEAEERRYPGGLEDRFE 780

Query: 1035 GPLLEAD--TRKPVYRHRALDQ-DGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYK 1091
             P LE D    KP   + A+D  DGI     ++   Q +V+++ P               
Sbjct: 781  KPSLEKDLLDVKPPQAYEAIDPVDGIAYVEAELYGGQAVVSRTSP--------------- 825

Query: 1092 EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVE 1151
              P  Y     S LE  +++   + + L+                  RHG+KG+I     
Sbjct: 826  --PRFYT----STLEPRVMTKRKDTSLLL------------------RHGEKGII----- 856

Query: 1152 QEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFL 1211
              D  F        I+ +P G+K                                    L
Sbjct: 857  --DRVF--------IMESPGGIK------------------------------------L 870

Query: 1212 IKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTV 1271
             K+ +R  R  E+GDKF+SRHGQKGV+G++V QEDMPF E GI PD+I+NPH  PSRMTV
Sbjct: 871  AKVRVRDLRPTELGDKFASRHGQKGVVGMLVPQEDMPFTEEGITPDLIINPHAIPSRMTV 930

Query: 1272 GKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEA 1331
            G+L+E + GKA  + G   + TAF    L +++E L  +G+   GK++ Y G+TGE LEA
Sbjct: 931  GQLLEAITGKAAALAGRRIDATAFEPPSLDEIREILRSYGFRSDGKEVLYDGVTGEKLEA 990

Query: 1332 YIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
             I+ G VYY+KL H+V DK+HAR+RG   +LTRQPT  R +
Sbjct: 991  EIFIGVVYYEKLHHLVADKMHARARGRVQILTRQPTEGRAR 1031



 Score = 97.8 bits (242), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 55/153 (35%), Positives = 85/153 (55%), Gaps = 9/153 (5%)

Query: 182 KAAQFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRI 241
           K    ++V+ +R D IT  L  A+ TGNW        R GV+Q+L R +Y+S +  + R+
Sbjct: 382 KTRDINLVSIVRPDIITERLNHALATGNWV-----GGRTGVSQILDRTNYLSTISHLRRV 436

Query: 242 NSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIM 301
            S   +T+     R L  +QWG LCP ++PEG+ CGLVK+LAL+  ++   DEK +  ++
Sbjct: 437 VSPLSRTQPHFEARELHPTQWGRLCPVESPEGQNCGLVKHLALLATLSNGTDEKQVYDLL 496

Query: 302 YN-IGIEHIAMFNGEELSSPGVYLVFVNGILAG 333
              +G+  +    G+ +S   VYL   NG L G
Sbjct: 497 VGRLGVVPVEKTVGKNISGARVYL---NGRLIG 526



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 71/131 (54%), Gaps = 15/131 (11%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKR 751
           + D +  G +EYLD  E  +++IA   S + P   THLEI P  +LG+ A          
Sbjct: 610 WSDLIENGIVEYLDAEEEENAYIATDVSELTPQ-HTHLEIVPAAILGIIAMT-------- 660

Query: 752 FHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTI 811
                 +P+  +NQ+PRN+YQ AM KQ++G   YN + R+D  M+ + Y Q+P+V+++  
Sbjct: 661 ------IPFIEYNQSPRNSYQAAMAKQSLGIPHYNFKLRMDPRMHVMYYPQKPLVKTRIF 714

Query: 812 RITNFHKLPAG 822
            +     LP G
Sbjct: 715 DLLPLDNLPYG 725



 Score = 48.1 bits (113), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 2/68 (2%)

Query: 340 EVCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIE-YTRGSQRVVRSDLVIGRMPIM 398
           EV +P   E+       TP   RLR++TY+AP+ + +  Y  G +R   S + IG +PIM
Sbjct: 69  EVGQPTFREADGSDLALTPMIARLRNITYAAPLYLTMTLYVDGEERRTES-VYIGSLPIM 127

Query: 399 LQSSKCVL 406
           ++S KCVL
Sbjct: 128 VKSKKCVL 135


>gi|238592160|ref|XP_002392825.1| hypothetical protein MPER_07551 [Moniliophthora perniciosa FA553]
 gi|215459407|gb|EEB93755.1| hypothetical protein MPER_07551 [Moniliophthora perniciosa FA553]
          Length = 401

 Score =  275 bits (704), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 136/245 (55%), Positives = 173/245 (70%), Gaps = 4/245 (1%)

Query: 932  MGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGQNATIAVMSYSG 991
            MGKQA+G IGYNQ NRIDTL+Y  VY Q+PMV++KTI +  + +LPAGQNAT+AVMSYSG
Sbjct: 1    MGKQAIGAIGYNQLNRIDTLLYLSVYPQQPMVKTKTIELIGYDRLPAGQNATVAVMSYSG 60

Query: 992  YDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRILGPLLEADTRKPVYRHRA 1051
            YDIEDALI+NKASLDRG+GRC V R +  ++++YPN T+DR+    L+ +  K   +   
Sbjct: 61   YDIEDALILNKASLDRGYGRCQVLRKNTTLIRKYPNGTYDRLADAPLD-ENGKITKKFDI 119

Query: 1052 LDQDGIVAPGEQICERQVLVNKSMPTISVSAI---SMATPEYKEVPVSYKGSVPSYLEKV 1108
            +  DG+   GE++    V +NK  P  +         AT  YK  P++YK  V   ++KV
Sbjct: 120  IQPDGLAGVGERVDPGDVYINKQTPMNANDNTFTGQAATVPYKNSPMTYKSPVAGNIDKV 179

Query: 1109 LVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIM 1168
            ++S    D  LIK+L+RQTRRPE+GDKFSSRHGQKGV GLIV QEDMPFN+ GI PD IM
Sbjct: 180  MISETENDQTLIKVLIRQTRRPELGDKFSSRHGQKGVCGLIVNQEDMPFNDQGIVPDTIM 239

Query: 1169 NPHGL 1173
            NPHG 
Sbjct: 240  NPHGF 244



 Score =  193 bits (490), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 107/209 (51%), Positives = 130/209 (62%), Gaps = 22/209 (10%)

Query: 1169 NPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKF 1228
            N +   G      YK  P++YK  V   ++KV++S    D  LIK+L+RQTRRPE+GDKF
Sbjct: 148  NDNTFTGQAATVPYKNSPMTYKSPVAGNIDKVMISETENDQTLIKVLIRQTRRPELGDKF 207

Query: 1229 SSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAG----- 1283
            SSRHGQKGV GLIV QEDMPFN+ GI PD IMNPHG+PSRMTVGK+I    G A      
Sbjct: 208  SSRHGQKGVCGLIVNQEDMPFNDQGIVPDTIMNPHGFPSRMTVGKMINCSLGNAKLQYVP 267

Query: 1284 LMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKL 1343
            L+E   K  T  G    +     LI +G++Y GKD+  SGITG  L +Y           
Sbjct: 268  LLEIQGKSFTVEGPWSRL-----LIENGFSYSGKDMLTSGITGN-LVSY----------- 310

Query: 1344 KHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
            KHMV DK+HAR+RGPR  LTRQPT  R +
Sbjct: 311  KHMVMDKMHARARGPRATLTRQPTEGRSR 339



 Score = 69.7 bits (169), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/49 (63%), Positives = 40/49 (81%)

Query: 775 MGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
           MGKQA+G IGYNQ NRIDTL+Y  VY Q+PMV++KTI +  + +LPAG+
Sbjct: 1   MGKQAIGAIGYNQLNRIDTLLYLSVYPQQPMVKTKTIELIGYDRLPAGQ 49


>gi|443917907|gb|ELU38513.1| DNA-directed RNA polymerase III subunit [Rhizoctonia solani AG-1 IA]
          Length = 1248

 Score =  275 bits (703), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 141/267 (52%), Positives = 178/267 (66%), Gaps = 15/267 (5%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQ++G I YNQ NRIDTL+Y  VY Q+PMV++KTI +  
Sbjct: 731  GLIPYPHHNQSPRNTYQCAMGKQSIGAIAYNQLNRIDTLLYLSVYPQQPMVKTKTIELIG 790

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + +LPAGQNAT+AVMSYSGYDIEDALI+NK        R  ++     V ++      DR
Sbjct: 791  YDRLPAGQNATVAVMSYSGYDIEDALILNKL-------RSRLW-TMPGVQEERDTHPFDR 842

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMP------TISVSAISMA 1086
            +     EAD      R+  +  DGI   GE++    V VNK  P      T +    + A
Sbjct: 843  LADAPREADGSVQ-KRYDIIQADGIAGVGERVDPGDVYVNKQSPINANDNTFNTGEGASA 901

Query: 1087 TPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVI 1146
            +  Y+  P+SYK  +  Y++KV+++    D  L+K+LLRQTRRPE+GDKFSSRHGQKGV 
Sbjct: 902  SISYRNTPMSYKSPMAGYIDKVMLTDTDNDQTLVKVLLRQTRRPELGDKFSSRHGQKGVC 961

Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGL 1173
            GLIV QEDMPFN+ GI PD IMNPHG 
Sbjct: 962  GLIVNQEDMPFNDQGINPDTIMNPHGF 988



 Score =  251 bits (640), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 121/221 (54%), Positives = 155/221 (70%), Gaps = 24/221 (10%)

Query: 1174 KGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
            +G      Y+  P+SYK  +  Y++KV+++    D  L+K+LLRQTRRPE+GDKFSSRHG
Sbjct: 897  EGASASISYRNTPMSYKSPMAGYIDKVMLTDTDNDQTLVKVLLRQTRRPELGDKFSSRHG 956

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAG------------- 1280
            QKGV GLIV QEDMPFN+ GI PD IMNPHG+PSRMTVGK+IELLAG             
Sbjct: 957  QKGVCGLIVNQEDMPFNDQGINPDTIMNPHGFPSRMTVGKMIELLAGKVSGCMRFTISPM 1016

Query: 1281 -----KAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYS 1335
                 KAG++ G+ + GTAFGG+K+ D+   LI +G++Y GKD+  SGITGE +E Y+Y 
Sbjct: 1017 PHQNTKAGVLSGSLQYGTAFGGSKVEDMSRILIDYGFSYAGKDMLTSGITGEPMECYVYF 1076

Query: 1336 GPVYYQK------LKHMVQDKIHARSRGPRVVLTRQPTGRR 1370
            GP+YYQ       ++HMV DK+HAR++GPR VLTRQPT  R
Sbjct: 1077 GPIYYQLRSNRNFIEHMVMDKMHARAKGPRAVLTRQPTEGR 1117



 Score =  171 bits (433), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 83/136 (61%), Positives = 98/136 (72%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G   FDDFL +G IEYLDVNE NDSHIA+ ES I P  TTHLEI PFT+LG  AG     
Sbjct: 678 GVVTFDDFLKKGSIEYLDVNEENDSHIALYESSIEPS-TTHLEIEPFTILGAVAG----- 731

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYPHHNQ+PRNTYQCAMGKQ++G I YNQ NRIDTL+Y  VY Q+PMV+
Sbjct: 732 ---------LIPYPHHNQSPRNTYQCAMGKQSIGAIAYNQLNRIDTLLYLSVYPQQPMVK 782

Query: 808 SKTIRITNFHKLPAGK 823
           +KTI +  + +LPAG+
Sbjct: 783 TKTIELIGYDRLPAGQ 798



 Score =  151 bits (381), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 91/209 (43%), Positives = 126/209 (60%), Gaps = 12/209 (5%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPK-IKAAQFDIVNH 191
           +D  DY  N  ++   Q  + ++ D+   F     ++   I DK++ K  + ++FD    
Sbjct: 408 VDDRDYVGNKRLELAGQLLSLLFEDI---FKTFNQNLKSSI-DKVLKKPSRTSEFDAYQS 463

Query: 192 M--RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
           +  + D IT+    AI TGNW+++RFKMER GVT VLSR  Y+         +S      
Sbjct: 464 LLYQSDLITSGFVRAISTGNWSLKRFKMERAGVTHVLSR--YVKLNLASVYSSSSVPPLD 521

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIE-- 307
            VSGPR+LQ SQWGMLC SDTPEGEACGLVKNLALMTHITT+ +E+ + KI+Y +G+E  
Sbjct: 522 SVSGPRALQPSQWGMLCTSDTPEGEACGLVKNLALMTHITTDVEEEPIKKIVYMLGVEDD 581

Query: 308 -HIAMFNGEELSSPGVYLVFVNGILAGIT 335
             I    G E+ SP  ++V VNG + G+T
Sbjct: 582 TDITFSTGAEIYSPHTFVVNVNGSIVGLT 610



 Score =  107 bits (266), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 56/140 (40%), Positives = 87/140 (62%), Gaps = 1/140 (0%)

Query: 397 IMLQSSKCVLRNKTEYTSSSRRASTSSVTMHSQRTSPLLSCKKLRQKRFQTYKKTPV-DD 455
           I+L  +     +K+ +  +    + + V    Q    + S  K+ ++ FQ   K PV ++
Sbjct: 305 ILLLCAGTTEAHKSAFAPNLEDCALAGVFTTQQALEYIGSRVKVTRRGFQAGPKRPVWEE 364

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A + L++  +AH+ V  M FK KA+Y+A M RR+++A++D  ++DDRDY GNKRLELAG 
Sbjct: 365 AMEALATIVLAHVEVKGMDFKHKAIYIATMTRRVLMAMADEKLVDDRDYVGNKRLELAGQ 424

Query: 516 LLSLMFEDVFKRFNSELKET 535
           LLSL+FED+FK FN  LK +
Sbjct: 425 LLSLLFEDIFKTFNQNLKSS 444



 Score = 80.1 bits (196), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 37/65 (56%), Positives = 51/65 (78%), Gaps = 2/65 (3%)

Query: 347 EESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVL 406
           ++SF+  +  TPHECRLRD TY+A ITVD++YTRG+  V R  + IGR+PIML+S+KCVL
Sbjct: 143 DDSFD--KSVTPHECRLRDTTYAATITVDVQYTRGNVIVRRKGVPIGRLPIMLRSNKCVL 200

Query: 407 RNKTE 411
             ++E
Sbjct: 201 AGQSE 205



 Score = 71.6 bits (174), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/96 (41%), Positives = 56/96 (58%), Gaps = 12/96 (12%)

Query: 126 KGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQ 185
           KGLVK HIDSF+YF++V++  +++AN  + SDVDP F+LKY  IHVG     +P      
Sbjct: 91  KGLVKQHIDSFNYFVDVDLANILKANNKVLSDVDPKFWLKYTGIHVG-----MPTRNDDS 145

Query: 186 FD--IVNH---MRQDTITNALTAAIQ--TGNWTIRR 214
           FD  +  H   +R  T    +T  +Q   GN  +RR
Sbjct: 146 FDKSVTPHECRLRDTTYAATITVDVQYTRGNVIVRR 181


>gi|303391303|ref|XP_003073881.1| DNA-directed RNA polymerase III subunit 2 [Encephalitozoon
            intestinalis ATCC 50506]
 gi|303303030|gb|ADM12521.1| DNA-directed RNA polymerase III subunit 2 [Encephalitozoon
            intestinalis ATCC 50506]
          Length = 1110

 Score =  274 bits (700), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 141/261 (54%), Positives = 178/261 (68%), Gaps = 21/261 (8%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GLVP+PHHNQ+PRNTYQCAMGKQA+G I  N + R D ++  L Y  RPMV +K + + N
Sbjct: 677  GLVPFPHHNQSPRNTYQCAMGKQAIGHISLNVKKRFDPVILQLTYTHRPMVSTKILDLIN 736

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            ++++PAGQNA +AVMSYSGYDIEDAL++NK S++RG  R  VY+    +LK++ N   D 
Sbjct: 737  YNEIPAGQNAMVAVMSYSGYDIEDALVLNKTSIERGLFRVEVYKTITTLLKKHSNGLSD- 795

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKE 1092
            ILGP        P  +   LD DG+  PG+ I +  V VNK  P   V         YK 
Sbjct: 796  ILGP-------NP--KESVLDDDGLGKPGKMIRDGTVYVNKMSPVEGV---------YKF 837

Query: 1093 VPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQ 1152
                ++G  P+Y++KVL+ + S+D  LIK +LRQTR PEIGDKFSSRHGQKGV+GLIV Q
Sbjct: 838  TGKVHRGD-PAYIDKVLI-TKSQDQILIKTMLRQTRPPEIGDKFSSRHGQKGVVGLIVGQ 895

Query: 1153 EDMPFNESGICPDIIMNPHGL 1173
            EDMPFN+ GI PDIIMNPHG 
Sbjct: 896  EDMPFNDQGISPDIIMNPHGF 916



 Score =  248 bits (632), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 116/179 (64%), Positives = 141/179 (78%), Gaps = 1/179 (0%)

Query: 1194 PSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESG 1253
            P+Y++KVL++  S+D  LIK +LRQTR PEIGDKFSSRHGQKGV+GLIV QEDMPFN+ G
Sbjct: 846  PAYIDKVLIT-KSQDQILIKTMLRQTRPPEIGDKFSSRHGQKGVVGLIVGQEDMPFNDQG 904

Query: 1254 ICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYN 1313
            I PDIIMNPHG+PSRMTVGK+IEL++GKAG++ G   + TAF    +    E L +HG++
Sbjct: 905  ISPDIIMNPHGFPSRMTVGKIIELISGKAGVLSGQILDSTAFKENSVEQTCELLAKHGFS 964

Query: 1314 YQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
            Y GKD F SG TG  L AYI+ GPV+YQ+LKHMV DKIH R+RGPR +LTRQPT  R K
Sbjct: 965  YSGKDCFTSGTTGAPLTAYIFFGPVFYQRLKHMVADKIHMRARGPRAILTRQPTEGRSK 1023



 Score =  187 bits (474), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 91/164 (55%), Positives = 119/164 (72%), Gaps = 3/164 (1%)

Query: 175 DKIIPK-IKAAQFDIVN--HMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSY 231
           DKI+ K  +A +FD +   +++ + IT+ L+ AI TGNW ++RF+MER GVT VLSR SY
Sbjct: 370 DKILSKRSRAQEFDALTFLNLQANMITSTLSRAISTGNWNLKRFRMERSGVTHVLSRHSY 429

Query: 232 ISGLGMMTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTE 291
           IS LGMMT+INS FEKTRKVSGPRSL  S WGMLCP DTPEGE+CGLVKNLAL+  ITT 
Sbjct: 430 ISALGMMTKINSHFEKTRKVSGPRSLHTSSWGMLCPVDTPEGESCGLVKNLALLAEITTN 489

Query: 292 NDEKNMLKIMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAGIT 335
           +D + +L +M+ +G+  I      E+    ++ VF+NG + GIT
Sbjct: 490 SDTRPVLDLMFRLGVVDINSVYTREIHQKDMFSVFLNGDIVGIT 533



 Score =  134 bits (336), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 66/138 (47%), Positives = 87/138 (63%), Gaps = 15/138 (10%)

Query: 686 FLGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIEL 745
           +L +K F D L EG +EYLDVNE ND  +A+    I    TTHLEI+ F +LG  AG   
Sbjct: 622 YLKYKSFSDLLEEGFVEYLDVNEENDCLVALRPEDIVEE-TTHLEISEFAILGYVAG--- 677

Query: 746 LQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPM 805
                      LVP+PHHNQ+PRNTYQCAMGKQA+G I  N + R D ++  L Y  RPM
Sbjct: 678 -----------LVPFPHHNQSPRNTYQCAMGKQAIGHISLNVKKRFDPVILQLTYTHRPM 726

Query: 806 VESKTIRITNFHKLPAGK 823
           V +K + + N++++PAG+
Sbjct: 727 VSTKILDLINYNEIPAGQ 744



 Score = 76.3 bits (186), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/72 (54%), Positives = 50/72 (69%), Gaps = 3/72 (4%)

Query: 341 VCKPEIEESF-NYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIML 399
           V  P IEE+  NY     P ECRLRD+TYSA I VDIEY R  Q +V+ D+ IG+MP+ML
Sbjct: 62  VGMPSIEENMVNY--DVFPIECRLRDMTYSANIYVDIEYVRNRQIIVKRDICIGKMPVML 119

Query: 400 QSSKCVLRNKTE 411
           +SS+C LR + +
Sbjct: 120 RSSRCHLRKEAK 131



 Score = 73.9 bits (180), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 35/83 (42%), Positives = 53/83 (63%)

Query: 453 VDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLEL 512
           +++    LS   + ++       + K +Y+A+MIRR+V    +    DD+D+ GNKR EL
Sbjct: 286 IEEVLTILSEKVLPNVQTEGCNLRKKGIYIALMIRRLVQTKLNILKEDDKDFVGNKRFEL 345

Query: 513 AGSLLSLMFEDVFKRFNSELKET 535
           AG LLS++FED FKRFN ELK++
Sbjct: 346 AGQLLSILFEDTFKRFNFELKKS 368



 Score = 73.2 bits (178), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/59 (55%), Positives = 46/59 (77%)

Query: 115 KWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGI 173
           + +L+  F KEKGLV+ HI+S+DYF++ EIK L++AN  + SD+D  FYLKYLDI VG+
Sbjct: 6   RLELIKLFFKEKGLVRQHIESYDYFVDHEIKALVRANQIVDSDIDHTFYLKYLDIRVGM 64


>gi|399216789|emb|CCF73476.1| unnamed protein product [Babesia microti strain RI]
          Length = 1146

 Score =  272 bits (696), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 128/261 (49%), Positives = 181/261 (69%), Gaps = 16/261 (6%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQC MGKQA+G +GYNQ +R DT+++ LVY Q+P+V ++T+++T 
Sbjct: 702  GLIPYPHHNQSPRNTYQCGMGKQAIGSVGYNQFSRCDTILHTLVYPQKPLVTTRTVKLTA 761

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNA +AVMSY GY+IEDA+++NKAS++RGFGRC+  +     LK+Y   + D 
Sbjct: 762  FEKLPAGQNAIVAVMSYGGYEIEDAIVINKASVERGFGRCISMKRMSVELKKYHTGSSD- 820

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKE 1092
            I  P  +  +      ++ ++ DGIV  G ++   Q++V+K             T   K 
Sbjct: 821  IAAPTNQLASN---INYQGIESDGIVRVGHELSNDQIIVSK------------ITQGQKI 865

Query: 1093 VPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQ 1152
             PV YK +  S+L++V+V+  +    + KM+LR+ R PE+GDKFSSRHGQKGV+GLI  Q
Sbjct: 866  TPVKYKQNTSSHLDRVIVTDTTSGCRVYKMMLRKFRSPELGDKFSSRHGQKGVVGLIANQ 925

Query: 1153 EDMPFNESGICPDIIMNPHGL 1173
            ED+PF+ +G  PD+IMNPHG 
Sbjct: 926  EDLPFSSNGWVPDLIMNPHGF 946



 Score =  239 bits (611), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 111/196 (56%), Positives = 152/196 (77%), Gaps = 1/196 (0%)

Query: 1178 RITEYKEV-PVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKG 1236
            +IT+ +++ PV YK +  S+L++V+V+  +    + KM+LR+ R PE+GDKFSSRHGQKG
Sbjct: 858  KITQGQKITPVKYKQNTSSHLDRVIVTDTTSGCRVYKMMLRKFRSPELGDKFSSRHGQKG 917

Query: 1237 VIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFG 1296
            V+GLI  QED+PF+ +G  PD+IMNPHG+PSRMTVGKL+EL+A KA +  G   +GTAF 
Sbjct: 918  VVGLIANQEDLPFSSNGWVPDLIMNPHGFPSRMTVGKLLELVASKATVCTGIELDGTAFA 977

Query: 1297 GTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSR 1356
              ++  + + L++HG++  GK++ YSG TGEA+E YI++GP+YYQKLKHMVQDKIHAR R
Sbjct: 978  DPQMESIWKILLQHGFSPSGKELLYSGFTGEAIETYIFTGPIYYQKLKHMVQDKIHARGR 1037

Query: 1357 GPRVVLTRQPTGRRWK 1372
            GPR +LTRQPT  R K
Sbjct: 1038 GPRQLLTRQPTEGRSK 1053



 Score =  176 bits (447), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 78/148 (52%), Positives = 109/148 (73%)

Query: 187 DIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFE 246
           D   ++  D IT  + +++ TGNW I+RFKMER GVTQ+LSRL+Y++ +GMM RINSQFE
Sbjct: 435 DTFRNLPHDIITRGMQSSLSTGNWNIKRFKMERSGVTQILSRLNYMATIGMMMRINSQFE 494

Query: 247 KTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGI 306
           K RKVSGPR+L  SQWG +CP DTPEGE+CGLVKNLAL TH+T + + + + +++Y++G+
Sbjct: 495 KGRKVSGPRALSPSQWGFICPCDTPEGESCGLVKNLALATHVTNDENPQYLERLLYSLGL 554

Query: 307 EHIAMFNGEELSSPGVYLVFVNGILAGI 334
                    +L  P  +LVF+NG+L G+
Sbjct: 555 FPSKYVATRDLFDPRNWLVFLNGLLVGV 582



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 92/232 (39%), Positives = 127/232 (54%), Gaps = 38/232 (16%)

Query: 620 NFLFFLGGGGILPSIQRQTTCLLTLILFSLNGDGKRGARNSQQYCDCPDGYSSG-----C 674
           N+L FL G  +L  +      L+  I   L   GK G   S  YCD    Y S      C
Sbjct: 570 NWLVFLNG--LLVGVHSNAELLMDNIR-KLRRAGKIGEFVSI-YCDDSSVYISSDGGRVC 625

Query: 675 QP---------RPTFLNMHQFLGFK-RFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPG 724
           +P         + T   + Q +  K + +  L  G +E++DVNE N+  IA   + I   
Sbjct: 626 RPLIIVESGKSKLTNEILDQVIAGKLKLNQLLKGGILEWIDVNEENNLLIATKPNEITCK 685

Query: 725 VTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIG 784
            TTHLE+ PFT+LG+ +G              L+PYPHHNQ+PRNTYQC MGKQA+G +G
Sbjct: 686 -TTHLELDPFTILGIISG--------------LIPYPHHNQSPRNTYQCGMGKQAIGSVG 730

Query: 785 YNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI----SPGGAE 832
           YNQ +R DT+++ LVY Q+P+V ++T+++T F KLPAG+  I    S GG E
Sbjct: 731 YNQFSRCDTILHTLVYPQKPLVTTRTVKLTAFEKLPAGQNAIVAVMSYGGYE 782



 Score = 72.4 bits (176), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/68 (51%), Positives = 45/68 (66%), Gaps = 1/68 (1%)

Query: 344 PEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSK 403
           P  EE    T    P+ CR+RDLTYSAPI VD+EYTRGS  + + +  IGR+P+ML+S+ 
Sbjct: 64  PNYEEDM-VTSSLVPNICRIRDLTYSAPIYVDVEYTRGSDIIRKQNAEIGRLPVMLKSAI 122

Query: 404 CVLRNKTE 411
           C L  K E
Sbjct: 123 CSLEGKDE 130



 Score = 68.2 bits (165), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 55/85 (64%), Gaps = 3/85 (3%)

Query: 453 VDDARDFLSSTCIAHIPVINMR---FKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKR 509
           + +A D L    + H+P+   +   +  K   LA+M+RR++        LDD+D+YGNKR
Sbjct: 328 IKEAYDILDRVILPHVPMKKSKSRDYSEKITCLALMVRRVLNCAYKDAPLDDKDHYGNKR 387

Query: 510 LELAGSLLSLMFEDVFKRFNSELKE 534
           LELAG L+S++FED++K+F  ++K+
Sbjct: 388 LELAGQLVSILFEDLYKKFIFQVKK 412



 Score = 49.7 bits (117), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 41/64 (64%), Gaps = 2/64 (3%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANAN--IYSDVDPLFYLKYLDIHV 171
           D W+L+  +  E GL    I SF++F+   I++++ A +N  I +++D  FY+++LDI +
Sbjct: 2   DNWRLLPPYFLEYGLAMQQIRSFNHFVQSGIREILNAPSNKIIRTEIDTKFYIEFLDIRI 61

Query: 172 GIAD 175
           G+ +
Sbjct: 62  GLPN 65


>gi|154316380|ref|XP_001557511.1| hypothetical protein BC1G_04121 [Botryotinia fuckeliana B05.10]
          Length = 450

 Score =  272 bits (696), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 132/246 (53%), Positives = 179/246 (72%), Gaps = 6/246 (2%)

Query: 932  MGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGQNATIAVMSYSG 991
            MGKQA+G I YNQ +RIDTL+Y +VY Q+PMV+++TI +  + KLPAGQNAT+AVMS+SG
Sbjct: 1    MGKQAIGAIAYNQFSRIDTLLYLMVYPQQPMVKTRTIELIKYDKLPAGQNATVAVMSFSG 60

Query: 992  YDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRILGPLLEADTRKPVYRHRA 1051
            YDIEDAL++NKAS DRGFGRC V+R     LK+YPN++ DRI   ++  +  KP+ +HR 
Sbjct: 61   YDIEDALVLNKASCDRGFGRCQVFRKYSTQLKKYPNRSQDRIADRVI-GENGKPIAKHRI 119

Query: 1052 LDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATP----EYKEVPVSYKGSVPSYLEK 1107
            L  DGI   GE+I   +V +NK  P+ + ++  M       + K  P+ YK    +Y++K
Sbjct: 120  LGTDGIALVGERINAGEVYLNKESPS-NPNSTGMGNDFNLNDMKPAPMGYKLHDHAYIDK 178

Query: 1108 VLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDII 1167
            V++S    ++ ++K+  RQTRRPE+GDKFSSRHGQKGV+G+IV QEDMPF +SG+ PDII
Sbjct: 179  VMLSQTENESGVLKVQTRQTRRPELGDKFSSRHGQKGVVGIIVNQEDMPFADSGVTPDII 238

Query: 1168 MNPHGL 1173
            MNPHG 
Sbjct: 239  MNPHGF 244



 Score =  253 bits (646), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 116/204 (56%), Positives = 158/204 (77%)

Query: 1169 NPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKF 1228
            N  G+     + + K  P+ YK    +Y++KV++S    ++ ++K+  RQTRRPE+GDKF
Sbjct: 148  NSTGMGNDFNLNDMKPAPMGYKLHDHAYIDKVMLSQTENESGVLKVQTRQTRRPELGDKF 207

Query: 1229 SSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGN 1288
            SSRHGQKGV+G+IV QEDMPF +SG+ PDIIMNPHG+PSRMTVGK++ELL+GKAG++ G+
Sbjct: 208  SSRHGQKGVVGIIVNQEDMPFADSGVTPDIIMNPHGFPSRMTVGKMLELLSGKAGVINGS 267

Query: 1289 YKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQ 1348
             + GT FGG+ +  + + LI +G++Y GKD   SGITGE+L AY++ GP+YYQKLKHMVQ
Sbjct: 268  LEYGTCFGGSNVDVMGQILIDNGFSYSGKDFVTSGITGESLPAYVFFGPIYYQKLKHMVQ 327

Query: 1349 DKIHARSRGPRVVLTRQPTGRRWK 1372
            DK+H+RSRGPR +LTRQPT  R +
Sbjct: 328  DKMHSRSRGPRAILTRQPTEGRSR 351



 Score = 67.0 bits (162), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 29/49 (59%), Positives = 40/49 (81%)

Query: 775 MGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
           MGKQA+G I YNQ +RIDTL+Y +VY Q+PMV+++TI +  + KLPAG+
Sbjct: 1   MGKQAIGAIAYNQFSRIDTLLYLMVYPQQPMVKTRTIELIKYDKLPAGQ 49


>gi|296421976|ref|XP_002840539.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295636757|emb|CAZ84730.1| unnamed protein product [Tuber melanosporum]
          Length = 434

 Score =  271 bits (693), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 124/191 (64%), Positives = 160/191 (83%)

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
            YK+ P++YK    +Y++KVLVS++  +  LIK+L RQTRRPE+GDKFSSRHGQKGV G+I
Sbjct: 147  YKDAPMTYKLHDHAYIDKVLVSTSESEQTLIKVLTRQTRRPELGDKFSSRHGQKGVCGII 206

Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
              QEDMPF+++GI PDIIMNPHG+PSRMTVGK+IELLAGKAG++ G  + GTAFGG+K+ 
Sbjct: 207  ARQEDMPFSDTGIIPDIIMNPHGFPSRMTVGKMIELLAGKAGVLAGKLQYGTAFGGSKVD 266

Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
            D+ + L+ +G++Y GKD   SGITGE+LEAYI+ GP+YYQKLKHMVQDK+H+R+RGPR +
Sbjct: 267  DMAKILVDNGFSYSGKDFVTSGITGESLEAYIFFGPIYYQKLKHMVQDKMHSRARGPRAI 326

Query: 1362 LTRQPTGRRWK 1372
            LTRQPT  R +
Sbjct: 327  LTRQPTEGRSR 337



 Score =  259 bits (663), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 132/249 (53%), Positives = 168/249 (67%), Gaps = 26/249 (10%)

Query: 932  MGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGQNATIAVMSYSG 991
            MGKQA+G I YNQ  RIDTL+Y +VY Q+PMV+++TI +  + KLPAGQ+A +AVMSYSG
Sbjct: 1    MGKQAIGAIAYNQFLRIDTLLYLMVYPQQPMVKTRTIELIQYDKLPAGQSAIVAVMSYSG 60

Query: 992  YDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRILGPLLE-------ADTRK 1044
            YDIEDAL++NKASLDRGFGRC V+R     L++Y N   DRI     E        D   
Sbjct: 61   YDIEDALVLNKASLDRGFGRCQVFRKYSTTLRKYQNGAADRIGDIKRELSKDPENPDELV 120

Query: 1045 PVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKEVPVSYKGSVPSY 1104
            P+ +H AL  DG+ A GE+I   +V                    YK+ P++YK    +Y
Sbjct: 121  PIRKHAALQADGLAAVGEKISAGEVY-------------------YKDAPMTYKLHDHAY 161

Query: 1105 LEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICP 1164
            ++KVLVS++  +  LIK+L RQTRRPE+GDKFSSRHGQKGV G+I  QEDMPF+++GI P
Sbjct: 162  IDKVLVSTSESEQTLIKVLTRQTRRPELGDKFSSRHGQKGVCGIIARQEDMPFSDTGIIP 221

Query: 1165 DIIMNPHGL 1173
            DIIMNPHG 
Sbjct: 222  DIIMNPHGF 230



 Score = 67.4 bits (163), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 30/52 (57%), Positives = 40/52 (76%)

Query: 775 MGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
           MGKQA+G I YNQ  RIDTL+Y +VY Q+PMV+++TI +  + KLPAG+  I
Sbjct: 1   MGKQAIGAIAYNQFLRIDTLLYLMVYPQQPMVKTRTIELIQYDKLPAGQSAI 52


>gi|115503929|ref|XP_001218757.1| DNA-directed RNA polymerase III [Trypanosoma brucei brucei strain
            927/4 GUTat10.1]
 gi|83642239|emb|CAJ15945.1| DNA-directed RNA polymerase III, putative [Trypanosoma brucei brucei
            strain 927/4 GUTat10.1]
 gi|261325981|emb|CBH08807.1| DNA-directed RNA polymerase III, putative [Trypanosoma brucei
            gambiense DAL972]
          Length = 1129

 Score =  271 bits (693), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 233/749 (31%), Positives = 353/749 (47%), Gaps = 146/749 (19%)

Query: 449  KKTPVDDARDFLSSTCIAHIPVINMR----FKMKAMYLAVMIRRMVLALSDPDMLDDRDY 504
            +K+  D A +FL++  + HI    ++    F+ KA+Y+  M+RRMV A  D  +LD+RD+
Sbjct: 303  QKSKADSAAEFLANVLLCHIREGEVQRDWNFRHKALYVCFMVRRMVEASVDSSLLDERDF 362

Query: 505  YGNKRLELAGSLLSLMFEDVFKRFNSELKETNLSGVVNLVSGWWFE--LKYGNKIYIRSP 562
            YGN                  KRF +             + G  FE  LK  N++ +++ 
Sbjct: 363  YGN------------------KRFET----------TGTLMGLLFEDLLKQYNRV-VKTA 393

Query: 563  SRKLLAAGFSGPHSGRVRLMPEGPTILLNSCLRSGGKAQHE-ALYNAVQRHATKCCTLNF 621
              +LL+   +       +LM     ++ N    +    + E   +N  ++  T+   L+ 
Sbjct: 394  MDQLLSKKDTTKPFNLKQLMESKMEVIQNGMRVALSSGRWELKRFNMSRQGITQ--VLSR 451

Query: 622  LFFLGGGGILPSIQRQTTCLLTLILFSLNGDGKRGARNSQQY----CDCPDGYSSGCQPR 677
            L ++   G++       T L +    S    G R  + SQ      CD P+G S G    
Sbjct: 452  LSYISCIGMM-------TRLASSFEKSRKISGPRSLQPSQWGMVCPCDTPEGESCGLVKN 504

Query: 678  PTFLNMHQFLGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLL 737
               L+          DD         L V E +     +S +      T  L     TL+
Sbjct: 505  FAILSQVTL----DMDDSFVRAAAYNLGVEEVD----CISPNEFLKYYTVFLN---GTLM 553

Query: 738  GV-------CAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNR 790
            G+       C G+  L+ + R H       PH + A  +  +       +GC G     R
Sbjct: 554  GIHRYPSRLCRGVRTLRRSGRLH-------PHVSIAINDRQKSVQ----IGCDG----GR 598

Query: 791  IDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQISPGGAEELTARESCHEVLKIISFS 850
            I   +Y +V   +P V S+     +   L +GKC I+   AE L         ++ I  +
Sbjct: 599  I-VRLYIVVRDGKPAVTSQ-----HLDNLSSGKCSINDFLAEGL---------VEFIDVN 643

Query: 851  ISVAVFDSVWLGDVKQGVHQLSEEKEPRLLRKFQYFDVRTPYRLRRLLCWECVLYNKRFH 910
             +     +V+  D++Q    L  E                P  L  ++            
Sbjct: 644  EANDCLIAVYPKDIEQYTTHLEIE----------------PLSLLGVVA----------- 676

Query: 911  SPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRI 970
              G++P+PHHNQ+ RNT+Q AMGKQA+G I YNQ  R+DT++    Y QRP+  +K + +
Sbjct: 677  --GIIPFPHHNQSARNTFQSAMGKQALGTIAYNQYIRMDTVLMLGAYPQRPLCRTKAMNL 734

Query: 971  TNFHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTH 1030
            TN+  L AG NA + VMSYSGYDIEDA + N++SLDRG+GRC+V R  +  L++ PN  +
Sbjct: 735  TNYEILGAGINAMVCVMSYSGYDIEDAQVYNRSSLDRGYGRCVVLRKHEVELERLPNGEY 794

Query: 1031 DRILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEY 1090
            D I    L AD+   V RH AL+ DGI + G  + +  +LVNK  P  S+        E 
Sbjct: 795  DII----LPADSN--VGRHSALNSDGIASKGAVVRQFDILVNKYTPVPSM--------EP 840

Query: 1091 KEVPVSYKGSVPSYLEKVLVS--SNSEDAF----LIKMLLRQTRRPEIGDKFSSRHGQKG 1144
            +  P+ YK   P+ ++ V++S   +S+ +      IK++ R+ R PE GDKFSSRHGQKG
Sbjct: 841  RPNPLVYKYPQPAVVDHVVISPPGDSDRSMDVEQKIKVVTREVRGPEPGDKFSSRHGQKG 900

Query: 1145 VIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            V+GLI +  +MPFNE GICPD+IMNPHG 
Sbjct: 901  VVGLITDGVNMPFNEQGICPDMIMNPHGF 929



 Score =  245 bits (626), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 122/232 (52%), Positives = 160/232 (68%), Gaps = 20/232 (8%)

Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVS--S 1204
            G +V Q D+  N+    P +   P+              P+ YK   P+ ++ V++S   
Sbjct: 819  GAVVRQFDILVNKYTPVPSMEPRPN--------------PLVYKYPQPAVVDHVVISPPG 864

Query: 1205 NSEDAF----LIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIM 1260
            +S+ +      IK++ R+ R PE GDKFSSRHGQKGV+GLI +  +MPFNE GICPD+IM
Sbjct: 865  DSDRSMDVEQKIKVVTREVRGPEPGDKFSSRHGQKGVVGLITDGVNMPFNEQGICPDMIM 924

Query: 1261 NPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIF 1320
            NPHG+PSRMTVGKL+EL++ K   + G + +GTAFGG K  D+ EELIRHGYNY GKDIF
Sbjct: 925  NPHGFPSRMTVGKLLELVSSKVSALTGKFGDGTAFGGDKAEDLGEELIRHGYNYHGKDIF 984

Query: 1321 YSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
            YSG+TGE L AY++ GP+YYQ+LKHMV DK+HAR+ GPR +LTRQPT  R +
Sbjct: 985  YSGVTGEMLRAYVFFGPIYYQRLKHMVTDKMHARATGPRSMLTRQPTEGRSR 1036



 Score =  168 bits (425), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 76/151 (50%), Positives = 105/151 (69%), Gaps = 2/151 (1%)

Query: 193 RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVS 252
           + + I N +  A+ +G W ++RF M RQG+TQVLSRLSYIS +GMMTR+ S FEK+RK+S
Sbjct: 416 KMEVIQNGMRVALSSGRWELKRFNMSRQGITQVLSRLSYISCIGMMTRLASSFEKSRKIS 475

Query: 253 GPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMF 312
           GPRSLQ SQWGM+CP DTPEGE+CGLVKN A+++ +T + D+  +    YN+G+E +   
Sbjct: 476 GPRSLQPSQWGMVCPCDTPEGESCGLVKNFAILSQVTLDMDDSFVRAAAYNLGVEEVDCI 535

Query: 313 NGEELSSPGVYLVFVNGILAGITCHHKEVCK 343
           +  E      Y VF+NG L GI  +   +C+
Sbjct: 536 SPNEFLK--YYTVFLNGTLMGIHRYPSRLCR 564



 Score = 61.6 bits (148), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/73 (45%), Positives = 43/73 (58%), Gaps = 4/73 (5%)

Query: 341 VCKP-EIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYT---RGSQRVVRSDLVIGRMP 396
           VC+P EI       +  +PHECR RDLTY   I VD+EYT   R  +    +++ IG +P
Sbjct: 74  VCRPREIVGKGQLPKPVSPHECRTRDLTYRGDIVVDVEYTSRDRSKRICTETNIKIGTIP 133

Query: 397 IMLQSSKCVLRNK 409
           IML+SS C L  K
Sbjct: 134 IMLKSSSCNLYGK 146



 Score = 47.4 bits (111), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 41/68 (60%), Gaps = 2/68 (2%)

Query: 115 KWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLM--QANANIYSDVDPLFYLKYLDIHVG 172
           K  L+ + +  KGL+  H+ SFD+ INVE+ +++  ++N  I S +DP F ++Y  I V 
Sbjct: 16  KLALLPALINMKGLLNHHVASFDHLINVELGRILLNESNREIKSSIDPDFSIRYSGIRVC 75

Query: 173 IADKIIPK 180
              +I+ K
Sbjct: 76  RPREIVGK 83


>gi|19074837|ref|NP_586343.1| DNA-DIRECTED RNA POLYMERASE III SUBUNIT 2 (130kDa SUBUNIT)
            [Encephalitozoon cuniculi GB-M1]
 gi|19069562|emb|CAD25947.1| DNA-DIRECTED RNA POLYMERASE III SUBUNIT 2 (130kDa SUBUNIT)
            [Encephalitozoon cuniculi GB-M1]
          Length = 1110

 Score =  271 bits (693), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 133/261 (50%), Positives = 177/261 (67%), Gaps = 21/261 (8%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GLVP+PHHNQ+PRNTYQCAMGKQA+G I  N + R D+++  L Y  RPMV +K + + N
Sbjct: 677  GLVPFPHHNQSPRNTYQCAMGKQAIGHISLNVKKRFDSVILQLTYTHRPMVSTKILDLIN 736

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            ++++PAGQNA +AVMSYSGYDIEDAL++NK S++RG  R  VY+ +  +LK++ N   D 
Sbjct: 737  YNEIPAGQNAMVAVMSYSGYDIEDALVLNKTSVERGLFRVEVYKTTTTLLKKHSNGMSDV 796

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKE 1092
            +           P  +   LD+DG+  PG+ + +  V VNK  P             YK 
Sbjct: 797  LW----------PNPKESVLDEDGLGKPGKMVRDGTVYVNKMSP---------VDGTYKF 837

Query: 1093 VPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQ 1152
                ++G  P+Y++K+L+ + S+D  LIK +LRQTR PEIGDKFSSRHGQKGV+GL+V Q
Sbjct: 838  TGKVHRGD-PAYIDKILI-TKSQDQVLIKTMLRQTRVPEIGDKFSSRHGQKGVVGLLVRQ 895

Query: 1153 EDMPFNESGICPDIIMNPHGL 1173
            EDMPFN+ GI PDIIMNPHG 
Sbjct: 896  EDMPFNDQGIVPDIIMNPHGF 916



 Score =  251 bits (641), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 115/179 (64%), Positives = 143/179 (79%), Gaps = 1/179 (0%)

Query: 1194 PSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESG 1253
            P+Y++K+L++  S+D  LIK +LRQTR PEIGDKFSSRHGQKGV+GL+V QEDMPFN+ G
Sbjct: 846  PAYIDKILIT-KSQDQVLIKTMLRQTRVPEIGDKFSSRHGQKGVVGLLVRQEDMPFNDQG 904

Query: 1254 ICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYN 1313
            I PDIIMNPHG+PSRMTVGK++EL++GKAG++EG   + TAF    +    E LI+HG++
Sbjct: 905  IVPDIIMNPHGFPSRMTVGKIVELISGKAGVLEGQILDSTAFKENSVEQTCELLIKHGFS 964

Query: 1314 YQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
            Y GKD F SG TG  L AYI+ GPV+YQ+LKHMV DKIH R+RGPR +LTRQPT  R K
Sbjct: 965  YSGKDCFTSGTTGAPLAAYIFFGPVFYQRLKHMVADKIHMRARGPRAILTRQPTEGRSK 1023



 Score =  189 bits (480), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 112/261 (42%), Positives = 153/261 (58%), Gaps = 29/261 (11%)

Query: 103 TSKLKDSPEIRDKWKLVLSFLKEKGLVKPHIDSFDY-----FINVEIKKLMQANANIYSD 157
           +S +K  PE  ++ + VL+ L EK L    I+  D      +I + +++L Q   NI  +
Sbjct: 274 SSYIKLKPE-DNRIEEVLTVLSEKVLPNVQIEGCDLRKKGIYIALMVRRLAQTKLNILRE 332

Query: 158 VDPLFY-------------------LKYLDIHVGIA-DKIIPK-IKAAQFDIVN--HMRQ 194
            D  F                     K  +  +  + DKI+ K  +A +FD +   +++ 
Sbjct: 333 DDKDFVGNKRFELAGQLLSILFEDTFKRFNFELKKSIDKILSKRSRAQEFDALTFLNLQA 392

Query: 195 DTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVSGP 254
           + IT+ L  AI TGNW ++RF+MER GVT VLSR SYIS LGMMT+INS FEKTRKVSGP
Sbjct: 393 NMITSTLARAISTGNWNLKRFRMERSGVTHVLSRHSYISALGMMTKINSHFEKTRKVSGP 452

Query: 255 RSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMFNG 314
           RSL  S WGMLCP DTPEGE+CGLVKNLAL+  ITT +D K +L  +Y +G+  I     
Sbjct: 453 RSLHTSSWGMLCPVDTPEGESCGLVKNLALLAEITTNSDTKPILDTVYKLGVVDINSVYT 512

Query: 315 EELSSPGVYLVFVNGILAGIT 335
            E+    ++ VF+NG + GIT
Sbjct: 513 REIHQKDMFSVFLNGDIIGIT 533



 Score =  135 bits (341), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 67/138 (48%), Positives = 88/138 (63%), Gaps = 15/138 (10%)

Query: 686 FLGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIEL 745
           +L +K F D L EG IEYLDVNE ND  +A+    I    TTHLEI+ F +LG  AG   
Sbjct: 622 YLKYKSFTDLLEEGFIEYLDVNEENDCLVALKPEDIGEE-TTHLEISEFAILGYVAG--- 677

Query: 746 LQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPM 805
                      LVP+PHHNQ+PRNTYQCAMGKQA+G I  N + R D+++  L Y  RPM
Sbjct: 678 -----------LVPFPHHNQSPRNTYQCAMGKQAIGHISLNVKKRFDSVILQLTYTHRPM 726

Query: 806 VESKTIRITNFHKLPAGK 823
           V +K + + N++++PAG+
Sbjct: 727 VSTKILDLINYNEIPAGQ 744



 Score = 78.2 bits (191), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 40/80 (50%), Positives = 53/80 (66%), Gaps = 3/80 (3%)

Query: 341 VCKPEIEESF-NYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIML 399
           V  P +EE+  NY     P ECRLRD+TYSA I VDIEY R  Q +V+ D+ IG+MP+ML
Sbjct: 62  VAMPSVEENMVNY--NVFPIECRLRDITYSANIYVDIEYVRNRQIIVKRDVCIGKMPVML 119

Query: 400 QSSKCVLRNKTEYTSSSRRA 419
           +SS+C LR +T+     R+ 
Sbjct: 120 RSSRCHLRRETKGPMEGRKT 139



 Score = 72.0 bits (175), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/85 (42%), Positives = 57/85 (67%), Gaps = 4/85 (4%)

Query: 453 VDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDML--DDRDYYGNKRL 510
           +++    LS   + ++ +     + K +Y+A+M+RR  LA +  ++L  DD+D+ GNKR 
Sbjct: 286 IEEVLTVLSEKVLPNVQIEGCDLRKKGIYIALMVRR--LAQTKLNILREDDKDFVGNKRF 343

Query: 511 ELAGSLLSLMFEDVFKRFNSELKET 535
           ELAG LLS++FED FKRFN ELK++
Sbjct: 344 ELAGQLLSILFEDTFKRFNFELKKS 368



 Score = 69.3 bits (168), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/59 (52%), Positives = 44/59 (74%)

Query: 115 KWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGI 173
           + +L+  F  EKGLV+ HI+S+DYF++ EIK L++AN  + SD+D  FYLKYLDI V +
Sbjct: 6   RLELIKLFFNEKGLVRQHIESYDYFVDHEIKALVRANQIVDSDIDHTFYLKYLDIRVAM 64


>gi|449328562|gb|AGE94839.1| DNA-directed RNA polymerase III subunit 2 130kDa subunit
            [Encephalitozoon cuniculi]
          Length = 1110

 Score =  271 bits (693), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 133/261 (50%), Positives = 177/261 (67%), Gaps = 21/261 (8%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GLVP+PHHNQ+PRNTYQCAMGKQA+G I  N + R D+++  L Y  RPMV +K + + N
Sbjct: 677  GLVPFPHHNQSPRNTYQCAMGKQAIGHISLNVKKRFDSVILQLTYTHRPMVSTKILDLIN 736

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            ++++PAGQNA +AVMSYSGYDIEDAL++NK S++RG  R  VY+ +  +LK++ N   D 
Sbjct: 737  YNEIPAGQNAMVAVMSYSGYDIEDALVLNKTSVERGLFRVEVYKTTTTLLKKHSNGMSDV 796

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKE 1092
            +           P  +   LD+DG+  PG+ + +  V VNK  P             YK 
Sbjct: 797  LW----------PNPKESVLDEDGLGKPGKMVRDGTVYVNKMSP---------VDGTYKF 837

Query: 1093 VPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQ 1152
                ++G  P+Y++K+L+ + S+D  LIK +LRQTR PEIGDKFSSRHGQKGV+GL+V Q
Sbjct: 838  TGKVHRGD-PAYIDKILI-TKSQDQVLIKTMLRQTRVPEIGDKFSSRHGQKGVVGLLVRQ 895

Query: 1153 EDMPFNESGICPDIIMNPHGL 1173
            EDMPFN+ GI PDIIMNPHG 
Sbjct: 896  EDMPFNDQGIVPDIIMNPHGF 916



 Score =  251 bits (641), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 115/179 (64%), Positives = 143/179 (79%), Gaps = 1/179 (0%)

Query: 1194 PSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESG 1253
            P+Y++K+L++  S+D  LIK +LRQTR PEIGDKFSSRHGQKGV+GL+V QEDMPFN+ G
Sbjct: 846  PAYIDKILIT-KSQDQVLIKTMLRQTRVPEIGDKFSSRHGQKGVVGLLVRQEDMPFNDQG 904

Query: 1254 ICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYN 1313
            I PDIIMNPHG+PSRMTVGK++EL++GKAG++EG   + TAF    +    E LI+HG++
Sbjct: 905  IVPDIIMNPHGFPSRMTVGKIVELISGKAGVLEGQILDSTAFKENSVEQTCELLIKHGFS 964

Query: 1314 YQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
            Y GKD F SG TG  L AYI+ GPV+YQ+LKHMV DKIH R+RGPR +LTRQPT  R K
Sbjct: 965  YSGKDCFTSGTTGAPLAAYIFFGPVFYQRLKHMVADKIHMRARGPRAILTRQPTEGRSK 1023



 Score =  189 bits (480), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 112/261 (42%), Positives = 153/261 (58%), Gaps = 29/261 (11%)

Query: 103 TSKLKDSPEIRDKWKLVLSFLKEKGLVKPHIDSFDY-----FINVEIKKLMQANANIYSD 157
           +S +K  PE  ++ + VL+ L EK L    I+  D      +I + +++L Q   NI  +
Sbjct: 274 SSYIKLKPE-DNRIEEVLTVLSEKVLPNVQIEGCDLRKKGIYIALMVRRLAQTKLNILRE 332

Query: 158 VDPLFY-------------------LKYLDIHVGIA-DKIIPK-IKAAQFDIVN--HMRQ 194
            D  F                     K  +  +  + DKI+ K  +A +FD +   +++ 
Sbjct: 333 DDKDFVGNKRFELAGQLLSILFEDTFKRFNFELKKSIDKILSKRSRAQEFDALTFLNLQA 392

Query: 195 DTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVSGP 254
           + IT+ L  AI TGNW ++RF+MER GVT VLSR SYIS LGMMT+INS FEKTRKVSGP
Sbjct: 393 NMITSTLARAISTGNWNLKRFRMERSGVTHVLSRHSYISALGMMTKINSHFEKTRKVSGP 452

Query: 255 RSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMFNG 314
           RSL  S WGMLCP DTPEGE+CGLVKNLAL+  ITT +D K +L  +Y +G+  I     
Sbjct: 453 RSLHTSSWGMLCPVDTPEGESCGLVKNLALLAEITTNSDTKPILDTVYKLGVVDINSVYT 512

Query: 315 EELSSPGVYLVFVNGILAGIT 335
            E+    ++ VF+NG + GIT
Sbjct: 513 REIHQKDMFSVFLNGDIIGIT 533



 Score =  135 bits (341), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 67/138 (48%), Positives = 88/138 (63%), Gaps = 15/138 (10%)

Query: 686 FLGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIEL 745
           +L +K F D L EG IEYLDVNE ND  +A+    I    TTHLEI+ F +LG  AG   
Sbjct: 622 YLKYKSFTDLLEEGFIEYLDVNEENDCLVALKPEDIGEE-TTHLEISEFAILGYVAG--- 677

Query: 746 LQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPM 805
                      LVP+PHHNQ+PRNTYQCAMGKQA+G I  N + R D+++  L Y  RPM
Sbjct: 678 -----------LVPFPHHNQSPRNTYQCAMGKQAIGHISLNVKKRFDSVILQLTYTHRPM 726

Query: 806 VESKTIRITNFHKLPAGK 823
           V +K + + N++++PAG+
Sbjct: 727 VSTKILDLINYNEIPAGQ 744



 Score = 77.8 bits (190), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 40/80 (50%), Positives = 53/80 (66%), Gaps = 3/80 (3%)

Query: 341 VCKPEIEESF-NYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIML 399
           V  P +EE+  NY     P ECRLRD+TYSA I VDIEY R  Q +V+ D+ IG+MP+ML
Sbjct: 62  VAMPSVEENMVNY--NVFPIECRLRDITYSANIYVDIEYVRNRQIIVKRDVCIGKMPVML 119

Query: 400 QSSKCVLRNKTEYTSSSRRA 419
           +SS+C LR +T+     R+ 
Sbjct: 120 RSSRCHLRRETKGPMEGRKT 139



 Score = 72.0 bits (175), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/85 (42%), Positives = 57/85 (67%), Gaps = 4/85 (4%)

Query: 453 VDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDML--DDRDYYGNKRL 510
           +++    LS   + ++ +     + K +Y+A+M+RR  LA +  ++L  DD+D+ GNKR 
Sbjct: 286 IEEVLTVLSEKVLPNVQIEGCDLRKKGIYIALMVRR--LAQTKLNILREDDKDFVGNKRF 343

Query: 511 ELAGSLLSLMFEDVFKRFNSELKET 535
           ELAG LLS++FED FKRFN ELK++
Sbjct: 344 ELAGQLLSILFEDTFKRFNFELKKS 368



 Score = 69.3 bits (168), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/59 (52%), Positives = 44/59 (74%)

Query: 115 KWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGI 173
           + +L+  F  EKGLV+ HI+S+DYF++ EIK L++AN  + SD+D  FYLKYLDI V +
Sbjct: 6   RLELIKLFFNEKGLVRQHIESYDYFVDHEIKALVRANQIVDSDIDHTFYLKYLDIRVAM 64


>gi|298712018|emb|CBJ32957.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 451

 Score =  270 bits (691), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 127/247 (51%), Positives = 176/247 (71%), Gaps = 10/247 (4%)

Query: 934  KQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGQNATIAVMSYSGYD 993
            + AMG    N   R+D L+Y LV+ Q+PMV ++ + + +F ++P GQNA+IAVMSYSGYD
Sbjct: 6    RHAMGTTALNMHERMDGLLYALVHPQKPMVTTRVLDLVHFDQVPGGQNASIAVMSYSGYD 65

Query: 994  IEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRILG-------PLLEADTRKPV 1046
            IEDA+++N+ SLDRGFGRC+V+R  +  +++YPN T D+I+G       P  E D R P 
Sbjct: 66   IEDAIVLNRGSLDRGFGRCMVFRKHQAPIRKYPNGTQDKIVGKVRASEFPRGEDDPRWP- 124

Query: 1047 YRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKEVPVSYKGSVPSYLE 1106
             R++ALD+DGI   G ++    ++VNK  P  S S     + ++   P+SYK    SY++
Sbjct: 125  -RYKALDEDGICRVGARLDPGTIMVNKHSPA-STSGSGPVSSDFASTPLSYKAPAESYVD 182

Query: 1107 KVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDI 1166
            KV++++N  + +LIK+LLRQTRRPE+GDKFSSRHGQKGV G+IV QEDMPF +SGICPD+
Sbjct: 183  KVVLTANENEDYLIKILLRQTRRPEVGDKFSSRHGQKGVCGIIVPQEDMPFADSGICPDL 242

Query: 1167 IMNPHGL 1173
            IMNPHG 
Sbjct: 243  IMNPHGF 249



 Score =  257 bits (656), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 127/233 (54%), Positives = 166/233 (71%), Gaps = 17/233 (7%)

Query: 1157 FNESGIC-------PDIIM----NPHGLKGCDRIT-EYKEVPVSYKGSVPSYLEKVLVSS 1204
             +E GIC       P  IM    +P    G   ++ ++   P+SYK    SY++KV++++
Sbjct: 129  LDEDGICRVGARLDPGTIMVNKHSPASTSGSGPVSSDFASTPLSYKAPAESYVDKVVLTA 188

Query: 1205 NSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHG 1264
            N  + +LIK+LLRQTRRPE+GDKFSSRHGQKGV G+IV QEDMPF +SGICPD+IMNPHG
Sbjct: 189  NENEDYLIKILLRQTRRPEVGDKFSSRHGQKGVCGIIVPQEDMPFADSGICPDLIMNPHG 248

Query: 1265 YPSRMTVGKLIELLAGKAGLMEGNYKEGTAFG-----GTKLVDVQEELIRHGYNYQGKDI 1319
            +PSRMTVGK++EL+AGKAG++ G+   GTAFG       ++    + L+  GY+Y GKD+
Sbjct: 249  FPSRMTVGKMVELVAGKAGVLHGHQAYGTAFGEEHGSADRVHLCCQALVERGYSYVGKDM 308

Query: 1320 FYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
              SG  GE L  YI++GPV+YQKLKHMV DK+HAR+RGPR VLTRQPT  R +
Sbjct: 309  LTSGTGGEPLMNYIFAGPVFYQKLKHMVMDKMHARARGPRAVLTRQPTEGRSR 361



 Score = 45.8 bits (107), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 30/47 (63%)

Query: 777 KQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
           + AMG    N   R+D L+Y LV+ Q+PMV ++ + + +F ++P G+
Sbjct: 6   RHAMGTTALNMHERMDGLLYALVHPQKPMVTTRVLDLVHFDQVPGGQ 52


>gi|300123537|emb|CBK24809.2| unnamed protein product [Blastocystis hominis]
          Length = 1056

 Score =  270 bits (689), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 129/211 (61%), Positives = 164/211 (77%), Gaps = 7/211 (3%)

Query: 1165 DIIMNPH-----GLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQT 1219
            DI++N H     G  G DR  + +  PV YK S   Y++KVL+++   + F+IK ++R  
Sbjct: 781  DIMVNKHVPMDTGSFGADR-DQLRAAPVKYKES-GGYVDKVLITTTDNEYFVIKTMVRDM 838

Query: 1220 RRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLA 1279
            RRPE+GDKFSSRHGQKGV+GLI  QE++PF+ +GI PD+IMNPHG+PSRMTVGK++ELLA
Sbjct: 839  RRPELGDKFSSRHGQKGVVGLITGQENLPFSTAGIYPDMIMNPHGFPSRMTVGKMMELLA 898

Query: 1280 GKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVY 1339
            GKAGL +G  K GT FGGT + D  EELIRHG+NY GKD+FYSGITGE L AYI++GPVY
Sbjct: 899  GKAGLWDGERKFGTIFGGTDIEDCAEELIRHGFNYSGKDLFYSGITGEPLRAYIFTGPVY 958

Query: 1340 YQKLKHMVQDKIHARSRGPRVVLTRQPTGRR 1370
            YQ+LKHMV+DK+ AR++GPR+ LT QPT  R
Sbjct: 959  YQRLKHMVKDKVFARAKGPRMALTHQPTQGR 989



 Score =  266 bits (679), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 133/270 (49%), Positives = 182/270 (67%), Gaps = 13/270 (4%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYN-LVYAQRPMVESKTIRITN 972
            L+PYP HNQ+PRNTYQCAMGKQA+G +  NQQ R+D    N +VY   PMV S+ + + +
Sbjct: 618  LIPYPDHNQSPRNTYQCAMGKQAIGTVACNQQQRVDVSPLNVMVYPMMPMVRSRVLDLLH 677

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F +LPAGQNA +AVMSYSGYDIEDA+++N+AS+DRG+GR ++ +     LK+YPN + D 
Sbjct: 678  FSQLPAGQNAMVAVMSYSGYDIEDAVVLNRASIDRGYGRVVISKKQVFSLKKYPNGSSDL 737

Query: 1033 ILGPLLEADTRKPVYRH---------RALDQDGIVAPGEQICERQVLVNKSMPTISVSAI 1083
            I GP    D +K +  H         +AL  DGIV  G  I    ++VNK +P +   + 
Sbjct: 738  IKGPPRRED-QKNIDDHTWNRLFEPYKALGSDGIVESGVPIHPGDIMVNKHVP-MDTGSF 795

Query: 1084 SMATPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1143
                 + +  PV YK S   Y++KVL+++   + F+IK ++R  RRPE+GDKFSSRHGQK
Sbjct: 796  GADRDQLRAAPVKYKES-GGYVDKVLITTTDNEYFVIKTMVRDMRRPELGDKFSSRHGQK 854

Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            GV+GLI  QE++PF+ +GI PD+IMNPHG 
Sbjct: 855  GVVGLITGQENLPFSTAGIYPDMIMNPHGF 884



 Score =  170 bits (430), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 83/200 (41%), Positives = 128/200 (64%), Gaps = 5/200 (2%)

Query: 137 DYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVNHMRQ-- 194
           DY+ N  I+      + ++ D   LF +    +   +   +    +   FD+V  M+Q  
Sbjct: 297 DYYGNKRIETAGDLMSLLFED---LFKMYNAKVKEFVNKSLQKTTRVNAFDVVPVMQQFH 353

Query: 195 DTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVSGP 254
           D ITN    AI++GNW ++RF ++R+GV + ++RLSYI+ +G MTRI S  EK +K+SGP
Sbjct: 354 DIITNGCVNAIKSGNWVLKRFHIDRKGVAEPVTRLSYIAAIGHMTRIRSHVEKAQKISGP 413

Query: 255 RSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMFNG 314
           R+LQ SQ+GM+CPSDTPEGE CGLVK+L ++ +IT + DEK + ++ Y++G+  + +F  
Sbjct: 414 RALQPSQFGMVCPSDTPEGEQCGLVKSLTILAYITIDQDEKALRQVAYDLGVLDVGLFGA 473

Query: 315 EELSSPGVYLVFVNGILAGI 334
           EEL +    LVF+NG L G+
Sbjct: 474 EELYARPASLVFLNGGLLGV 493



 Score =  159 bits (402), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 154/510 (30%), Positives = 219/510 (42%), Gaps = 123/510 (24%)

Query: 409 KTEYTSSSRRASTSSVTMHSQRTSPLLSCKKLRQKRFQTYKKTPVDDARDFLSSTCIAHI 468
           +T +  S   A    +    Q    + S   +R+ R+ + K++  ++ R+  ++T + H+
Sbjct: 204 RTYFNQSIEEAHELGIFTQQQALKWVGSLVSMRKGRW-SRKRSAEEEGREVFNTTILCHV 262

Query: 469 PVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGSLLSL-------MF 521
           PV+   F  K +YLA M R  +  + D  +L D+DYYGNKR+E AG L+SL       M+
Sbjct: 263 PVVRYDFWPKCVYLAYMTRECLQCIFDHSLLSDKDYYGNKRIETAGDLMSLLFEDLFKMY 322

Query: 522 EDVFKRF-NSELKETN------------------LSGVVNLV-SGWWFELKY-------- 553
               K F N  L++T                    +G VN + SG W   ++        
Sbjct: 323 NAKVKEFVNKSLQKTTRVNAFDVVPVMQQFHDIITNGCVNAIKSGNWVLKRFHIDRKGVA 382

Query: 554 ------------GNKIYIRSPSRKLLAAGFSGPHS------GRV--RLMPEGP------- 586
                       G+   IRS   K  A   SGP +      G V     PEG        
Sbjct: 383 EPVTRLSYIAAIGHMTRIRSHVEK--AQKISGPRALQPSQFGMVCPSDTPEGEQCGLVKS 440

Query: 587 -TILLNSCLRSGGKAQHE----------ALYNAVQRHATKCCTLNFLFFLGGGGILPSIQ 635
            TIL    +    KA  +           L+ A + +A        L FL GG  L  + 
Sbjct: 441 LTILAYITIDQDEKALRQVAYDLGVLDVGLFGAEELYARPAS----LVFLNGG--LLGVH 494

Query: 636 RQTTCLLTLILFSLNGDGKRGARNSQQY--------CDCPDGYSSGCQP---------RP 678
            Q   L+  +   L   G  GA  S  Y          C  G    C+P         RP
Sbjct: 495 SQPQALVRGVR-QLRRRGLLGAFVSVYYDRIRRCVHLSCDGGRI--CRPLLVLNRETGRP 551

Query: 679 TFLNMHQFLGFKR----FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPF 734
            FL      G +R      + +  G IEY+DVNE N   IAV++  I P   TH+EI P 
Sbjct: 552 -FLTKAHTDGIRRGTITIQELVRAGVIEYIDVNEENSCLIAVTDKDITPA-HTHMEIDPV 609

Query: 735 TLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTL 794
           ++LG+ A               L+PYP HNQ+PRNTYQCAMGKQA+G +  NQQ R+D  
Sbjct: 610 SILGIVAS--------------LIPYPDHNQSPRNTYQCAMGKQAIGTVACNQQQRVDVS 655

Query: 795 MYN-LVYAQRPMVESKTIRITNFHKLPAGK 823
             N +VY   PMV S+ + + +F +LPAG+
Sbjct: 656 PLNVMVYPMMPMVRSRVLDLLHFSQLPAGQ 685



 Score = 70.9 bits (172), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 38/72 (52%), Positives = 49/72 (68%), Gaps = 2/72 (2%)

Query: 340 EVCKPEI-EESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIM 398
           EV +P + E+S     + TP ECR R LTYSAPI  DI YT G  +++R  + IG++PIM
Sbjct: 23  EVGEPMVLEDSSIINNKITPMECRKRSLTYSAPIFADIIYTLGD-KIIRKKVRIGQIPIM 81

Query: 399 LQSSKCVLRNKT 410
           L S KCVLRNK+
Sbjct: 82  LHSCKCVLRNKS 93


>gi|396082394|gb|AFN84003.1| DNA-directed RNA polymerase III subunit 2 [Encephalitozoon romaleae
            SJ-2008]
          Length = 1110

 Score =  269 bits (688), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 133/261 (50%), Positives = 177/261 (67%), Gaps = 21/261 (8%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GLVP+PHHNQ+PRNTYQCAMGKQA+G I  N + R D+++  L Y  RPMV +K + + N
Sbjct: 677  GLVPFPHHNQSPRNTYQCAMGKQAIGHISLNVKKRFDSVILQLTYTHRPMVSTKILDLIN 736

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            ++++PAGQNA +AVMSYSGYDIEDAL++NKAS++RG  R  VY+ +  +LK++ +   D 
Sbjct: 737  YNEIPAGQNAMVAVMSYSGYDIEDALVLNKASIERGLFRVEVYKTTTTLLKKHSSGMSDV 796

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKE 1092
            +           P  +   LD DG+  PG+ + +  + VNK  P   V         YK 
Sbjct: 797  LW----------PNPKESVLDDDGLGKPGKMVKDGTIYVNKMSPIDGV---------YKF 837

Query: 1093 VPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQ 1152
                ++G  P+Y++KVL+ + S+D  LIK +LRQTR PEIGDK SSRHGQKGV+GLIV Q
Sbjct: 838  TGKIHRGD-PAYIDKVLI-TRSQDQVLIKTMLRQTRPPEIGDKLSSRHGQKGVVGLIVRQ 895

Query: 1153 EDMPFNESGICPDIIMNPHGL 1173
            EDMPFN+ G+ PDIIMNPHG 
Sbjct: 896  EDMPFNDQGVVPDIIMNPHGF 916



 Score =  244 bits (623), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 114/179 (63%), Positives = 140/179 (78%), Gaps = 1/179 (0%)

Query: 1194 PSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESG 1253
            P+Y++KVL++  S+D  LIK +LRQTR PEIGDK SSRHGQKGV+GLIV QEDMPFN+ G
Sbjct: 846  PAYIDKVLIT-RSQDQVLIKTMLRQTRPPEIGDKLSSRHGQKGVVGLIVRQEDMPFNDQG 904

Query: 1254 ICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYN 1313
            + PDIIMNPHG+PSRMTVGK+IEL++GKAG++EG   + TAF    + +    L  HG++
Sbjct: 905  VVPDIIMNPHGFPSRMTVGKIIELISGKAGVVEGKIFDSTAFKENSVEETCNILASHGFS 964

Query: 1314 YQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
            Y GKD F SG TG  L AYI+ GPV+YQ+LKHMV DKIH R+RGPR +LTRQPT  R K
Sbjct: 965  YSGKDCFTSGTTGAPLTAYIFFGPVFYQRLKHMVADKIHMRARGPRAILTRQPTEGRSK 1023



 Score =  184 bits (466), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 105/244 (43%), Positives = 145/244 (59%), Gaps = 28/244 (11%)

Query: 119 VLSFLKEKGLVKPHIDSFDY-----FINVEIKKLMQANANIYSDVDPLFY---------- 163
           VL+ L EK L    I+  +      +I + I++L Q   NI  + D  F           
Sbjct: 289 VLTILSEKVLPNVQIEGCNLRKKGIYIALMIRRLTQTRLNILKEDDKDFVGNKRFELAGQ 348

Query: 164 ---------LKYLDIHVGIA-DKIIPK-IKAAQFDIVN--HMRQDTITNALTAAIQTGNW 210
                     K  +  +  + DKI+ K  +A +FD +   +++ + IT+ L+ AI TGNW
Sbjct: 349 LLSILFEDTFKRFNFELKKSIDKILSKRSRAQEFDALTFLNLQANMITSTLSRAISTGNW 408

Query: 211 TIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDT 270
            ++RF+MER GVT VLSR SYIS +GMMT+INS FEKTRKVSGPRSL  S WGMLCP DT
Sbjct: 409 NLKRFRMERSGVTHVLSRHSYISAVGMMTKINSHFEKTRKVSGPRSLHTSSWGMLCPVDT 468

Query: 271 PEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMFNGEELSSPGVYLVFVNGI 330
           PEGE+CGLVKNLAL+  ITT +D + +L +++ +G   I      E+   G++ VF+NG 
Sbjct: 469 PEGESCGLVKNLALLAEITTNSDTRPVLDLIFKLGAVDINSVYTREIHQEGMFSVFLNGD 528

Query: 331 LAGI 334
           + GI
Sbjct: 529 IVGI 532



 Score =  135 bits (340), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 67/138 (48%), Positives = 88/138 (63%), Gaps = 15/138 (10%)

Query: 686 FLGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIEL 745
           +L ++ F D L EG IEYLDVNE ND  IA+    I    TTHLEI+ F +LG  AG   
Sbjct: 622 YLKYRSFSDLLEEGFIEYLDVNEENDCLIALRPEDIVEE-TTHLEISEFAILGYVAG--- 677

Query: 746 LQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPM 805
                      LVP+PHHNQ+PRNTYQCAMGKQA+G I  N + R D+++  L Y  RPM
Sbjct: 678 -----------LVPFPHHNQSPRNTYQCAMGKQAIGHISLNVKKRFDSVILQLTYTHRPM 726

Query: 806 VESKTIRITNFHKLPAGK 823
           V +K + + N++++PAG+
Sbjct: 727 VSTKILDLINYNEIPAGQ 744



 Score = 75.5 bits (184), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/69 (55%), Positives = 49/69 (71%), Gaps = 3/69 (4%)

Query: 344 PEIEESF-NYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSS 402
           P IEE+  NY     P ECRLRD+TYSA I VDIEY R  Q +V+ D+ IG+MP+ML+SS
Sbjct: 65  PSIEENMVNY--NVFPIECRLRDVTYSANIYVDIEYVRNRQIIVKRDVCIGKMPVMLRSS 122

Query: 403 KCVLRNKTE 411
           +C LR + +
Sbjct: 123 RCHLRKEAK 131



 Score = 75.1 bits (183), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/59 (57%), Positives = 46/59 (77%)

Query: 115 KWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGI 173
           + +L+  F KEKGLV+ HI+S+DYF++ EIK LM+AN  + SD+D  FYLKYLDI VG+
Sbjct: 6   RLELIKLFFKEKGLVRQHIESYDYFVDHEIKALMRANQIVDSDIDHTFYLKYLDIRVGM 64



 Score = 73.2 bits (178), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 53/83 (63%)

Query: 453 VDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLEL 512
           +++    LS   + ++ +     + K +Y+A+MIRR+     +    DD+D+ GNKR EL
Sbjct: 286 IEEVLTILSEKVLPNVQIEGCNLRKKGIYIALMIRRLTQTRLNILKEDDKDFVGNKRFEL 345

Query: 513 AGSLLSLMFEDVFKRFNSELKET 535
           AG LLS++FED FKRFN ELK++
Sbjct: 346 AGQLLSILFEDTFKRFNFELKKS 368


>gi|357514369|ref|XP_003627473.1| DNA-directed RNA polymerase III subunit RPC2 [Medicago truncatula]
 gi|355521495|gb|AET01949.1| DNA-directed RNA polymerase III subunit RPC2 [Medicago truncatula]
          Length = 653

 Score =  269 bits (688), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 145/304 (47%), Positives = 187/304 (61%), Gaps = 49/304 (16%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQN--------------RIDTLMYNLVYA 958
            GL+PYPHHNQ+PRNTYQCAMGKQAMG I YNQ                R+DTL+Y LVY 
Sbjct: 148  GLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQGKGSNIEYGRKLEELRRMDTLLYLLVYP 207

Query: 959  QRPMVESKTIRITNFHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLV---- 1014
            QRP++ +K+I +  + KL AGQNAT+AVMSYSGYDIEDA++MNK+SLDRGFGRC+V    
Sbjct: 208  QRPLLTTKSIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKRY 267

Query: 1015 --------------YRNS-------KCVLKQYPNQTHDRILGPLLEADTRKPVYRHRALD 1053
                          +R+          V ++Y N T DRI  P       + +   + LD
Sbjct: 268  AILFGDFTSLVATYFRDCLAHLVRYAAVRQKYSNGTEDRIERP------DRALNNMQILD 321

Query: 1054 QDGIVAPGEQICERQVLVNKSMPTIS---VSAISMATPEYKEVPVSY-KGSVPSYLEKVL 1109
             DGI +PGE I    + +NK  PT +   VS+ ++    Y+    ++ K      ++KV 
Sbjct: 322  DDGIASPGEIIRPTDIYINKKSPTETQNKVSSTNLPDSAYRSNYSTFNKCHGGEVVDKVA 381

Query: 1110 VSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMN 1169
            + ++ +    IK L R TRRPE+GDKFSSRHGQKGV G IV+QED PF+E GICPD+IMN
Sbjct: 382  LCNDKDSNMCIKFLTRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSEKGICPDLIMN 441

Query: 1170 PHGL 1173
            PHG 
Sbjct: 442  PHGF 445



 Score =  235 bits (599), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 108/181 (59%), Positives = 137/181 (75%), Gaps = 5/181 (2%)

Query: 1197 LEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICP 1256
            ++KV + ++ +    IK L R TRRPE+GDKFSSRHGQKGV G IV+QED PF+E GICP
Sbjct: 377  VDKVALCNDKDSNMCIKFLTRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSEKGICP 436

Query: 1257 DIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFG-----GTKLVDVQEELIRHG 1311
            D+IMNPHG+PSRMTVGK+IELL GKAG+  G +  G+AFG       K+  + + L++HG
Sbjct: 437  DLIMNPHGFPSRMTVGKMIELLGGKAGVSCGKFHYGSAFGEESGHADKVETISKTLVKHG 496

Query: 1312 YNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRW 1371
            +NY GKD  YSGITG  L+AYI+ GP+YYQKLKHMV DK+HAR  GP+ ++TRQPT  R 
Sbjct: 497  FNYSGKDFIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPKALITRQPTEGRA 556

Query: 1372 K 1372
            +
Sbjct: 557  R 557



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 76/150 (50%), Positives = 92/150 (61%), Gaps = 29/150 (19%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G   F DFL  G IEYLDVNE N++ IA+ E    P  TTH+EI PFT+LGV AG     
Sbjct: 95  GVCAFRDFLRNGLIEYLDVNEENNALIALYEKDATP-ETTHIEIEPFTILGVIAG----- 148

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQN--------------RIDT 793
                    L+PYPHHNQ+PRNTYQCAMGKQAMG I YNQ                R+DT
Sbjct: 149 ---------LIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQGKGSNIEYGRKLEELRRMDT 199

Query: 794 LMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
           L+Y LVY QRP++ +K+I +  + KL AG+
Sbjct: 200 LLYLLVYPQRPLLTTKSIELVGYDKLGAGQ 229


>gi|342179780|emb|CCC89254.1| putative DNA-directed RNA polymerase III [Trypanosoma congolense
            IL3000]
          Length = 1137

 Score =  269 bits (687), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 232/748 (31%), Positives = 355/748 (47%), Gaps = 146/748 (19%)

Query: 450  KTPVDDARDFLSSTCIAHIPVINMR----FKMKAMYLAVMIRRMVLALSDPDMLDDRDYY 505
            K+  D A DFL++  + HI    ++    F+ KA+Y+  M+RRM+ A  D  +LD+RD+Y
Sbjct: 304  KSKADSAADFLANVLLCHIREGEVQRDWNFRHKALYVCYMVRRMLEASLDSSLLDERDFY 363

Query: 506  GNKRLELAGSLLSLMFEDVFKRFNSELKETNLSGVVNLVSGWWFE--LKYGNKIYIRSPS 563
            GN                  KRF +             + G  FE  LK  N++ +++  
Sbjct: 364  GN------------------KRFET----------TGALMGLLFEDLLKQYNRV-VKTAM 394

Query: 564  RKLLAAGFSGPHSGRVRLMPEGPTILLNSCLRSGGKAQHE-ALYNAVQRHATKCCTLNFL 622
             +LL+   +       +LM     ++ N    +    + E   +N  ++  T+   L+ L
Sbjct: 395  DQLLSKKDTTKPFNIKQLMESKMEVIQNGMRVALSTGRWELKRFNMSRQGITQ--VLSRL 452

Query: 623  FFLGGGGILPSIQRQTTCLLTLILFSLNGDGKRGARNSQQY----CDCPDGYSSGCQPRP 678
             ++   G++       T L +    S    G R  + SQ      CD P+G S G     
Sbjct: 453  SYISCIGMM-------TRLASSFEKSRKISGPRSLQPSQWGMVCPCDTPEGESCGLVKNF 505

Query: 679  TFLNMHQFLGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLG 738
              L+          DD         L V E +    A++ +      T  L     TL+G
Sbjct: 506  AILSQVTL----DMDDTFVRAAAYNLGVEEVD----AITPNEFLTYFTVFLN---GTLIG 554

Query: 739  V-------CAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRI 791
            +       C G+  L+ + R H       PH + A  N +Q ++    +GC G     RI
Sbjct: 555  IHRYPNRLCRGVRSLRRSGRLH-------PHVSIAV-NDHQKSV---QIGCDG----GRI 599

Query: 792  DTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQISPGGAEELTARESCHEVLKIISFSI 851
               +Y +V    P V SK     +   L +G+C I+   AE L         ++ I  + 
Sbjct: 600  -VRLYMVVRNGEPAVTSK-----HLDNLSSGRCSINDFLAEGL---------VEFIDVNE 644

Query: 852  SVAVFDSVWLGDVKQGVHQLSEEKEPRLLRKFQYFDVRTPYRLRRLLCWECVLYNKRFHS 911
            +     +V+  D+++    L  E                P  L  ++             
Sbjct: 645  ANDCLIAVYPKDIEKYTTHLEIE----------------PLSLLGVVA------------ 676

Query: 912  PGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRIT 971
             G++P+PHHNQ+ RNT+Q AMGKQA+G IGYNQ  R+DT++   +Y QRP+  +K + +T
Sbjct: 677  -GIIPFPHHNQSARNTFQSAMGKQALGTIGYNQYIRMDTVLMLGIYPQRPLCRTKAMNLT 735

Query: 972  NFHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHD 1031
            N+  L AG NA + VMSYSGYDIEDA + N+ SLDRG+GRC+V R  +  L++ P+  +D
Sbjct: 736  NYESLGAGINAMVCVMSYSGYDIEDAQVYNRCSLDRGYGRCIVLRKHEVELERLPHGEYD 795

Query: 1032 RILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYK 1091
             +    L AD+    Y  RAL+ DGI + G  + +  +LVNK  P  S+        E +
Sbjct: 796  IV----LPADSNAGKY--RALNSDGIASKGAIVRQFDILVNKYTPVPSL--------EPR 841

Query: 1092 EVPVSYKGSVPSYLEKVLVS--SNSEDAF----LIKMLLRQTRRPEIGDKFSSRHGQKGV 1145
              P+ YK   P+ ++ V++S   +S+ +      IK++ R+ R PE GDKFSSRHGQKGV
Sbjct: 842  PNPLVYKYPQPAVVDHVVISPPGDSDRSMDVEQKIKVVTREVRIPEPGDKFSSRHGQKGV 901

Query: 1146 IGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            +GLI +  +MPFNE GICPD+IMNPHG 
Sbjct: 902  VGLITDGVNMPFNEQGICPDMIMNPHGF 929



 Score =  241 bits (614), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 119/232 (51%), Positives = 159/232 (68%), Gaps = 20/232 (8%)

Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVS--S 1204
            G IV Q D+  N+    P +   P+              P+ YK   P+ ++ V++S   
Sbjct: 819  GAIVRQFDILVNKYTPVPSLEPRPN--------------PLVYKYPQPAVVDHVVISPPG 864

Query: 1205 NSEDAF----LIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIM 1260
            +S+ +      IK++ R+ R PE GDKFSSRHGQKGV+GLI +  +MPFNE GICPD+IM
Sbjct: 865  DSDRSMDVEQKIKVVTREVRIPEPGDKFSSRHGQKGVVGLITDGVNMPFNEQGICPDMIM 924

Query: 1261 NPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIF 1320
            NPHG+PSRMTVGKL+EL++ K   + G + +GTAFGG K  D+ EEL+RHG+NY GKD+F
Sbjct: 925  NPHGFPSRMTVGKLLELVSSKVSALTGRFGDGTAFGGDKAEDMGEELLRHGFNYHGKDVF 984

Query: 1321 YSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
            YSGITGE L  +++ GP+YYQ+LKHMV DK+HAR+ GPR +LTRQPT  R +
Sbjct: 985  YSGITGEKLHGHVFFGPIYYQRLKHMVTDKVHARATGPRSMLTRQPTEGRSR 1036



 Score =  169 bits (427), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 81/172 (47%), Positives = 115/172 (66%), Gaps = 5/172 (2%)

Query: 175 DKIIPKIKAAQ-FDIVNHM--RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSY 231
           D+++ K    + F+I   M  + + I N +  A+ TG W ++RF M RQG+TQVLSRLSY
Sbjct: 395 DQLLSKKDTTKPFNIKQLMESKMEVIQNGMRVALSTGRWELKRFNMSRQGITQVLSRLSY 454

Query: 232 ISGLGMMTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTE 291
           IS +GMMTR+ S FEK+RK+SGPRSLQ SQWGM+CP DTPEGE+CGLVKN A+++ +T +
Sbjct: 455 ISCIGMMTRLASSFEKSRKISGPRSLQPSQWGMVCPCDTPEGESCGLVKNFAILSQVTLD 514

Query: 292 NDEKNMLKIMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAGITCHHKEVCK 343
            D+  +    YN+G+E +      E  +   + VF+NG L GI  +   +C+
Sbjct: 515 MDDTFVRAAAYNLGVEEVDAITPNEFLT--YFTVFLNGTLIGIHRYPNRLCR 564



 Score = 57.8 bits (138), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 42/74 (56%), Gaps = 4/74 (5%)

Query: 341 VCKP-EIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYT---RGSQRVVRSDLVIGRMP 396
           VC P EI       +  +PHECR RDLTY   + VD+EYT   R  +    +++ IG +P
Sbjct: 74  VCHPREIVGKGQLPKPVSPHECRTRDLTYRGDVVVDVEYTSRDRSKRTCTETNIKIGTIP 133

Query: 397 IMLQSSKCVLRNKT 410
           +ML+S  C L  K+
Sbjct: 134 VMLKSCCCNLYGKS 147



 Score = 45.4 bits (106), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 2/68 (2%)

Query: 115 KWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLM--QANANIYSDVDPLFYLKYLDIHVG 172
           K  L+ + +  KGL+  H+ SFD+ I VE+ +++  ++N  I S +DP F ++Y +I V 
Sbjct: 16  KLALLPALINMKGLLNHHLASFDHLIKVELGRILLNESNREIKSSIDPDFSIRYSNIRVC 75

Query: 173 IADKIIPK 180
              +I+ K
Sbjct: 76  HPREIVGK 83


>gi|145521170|ref|XP_001446440.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124413918|emb|CAK79043.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1131

 Score =  269 bits (687), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 136/270 (50%), Positives = 178/270 (65%), Gaps = 11/270 (4%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GLVP+PHHNQ+ RNT+QC MGKQ++G IG N Q R DT +Y L+Y Q P+V + ++   N
Sbjct: 657  GLVPFPHHNQSARNTFQCQMGKQSLGIIGMNTQIRCDTQLYQLIYPQTPLVRTVSMEAVN 716

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNS--KCVLKQYPNQT- 1029
             H+LPAG NA +AVMSYS YDIEDALIMNK+SLDRGFGR  VY+ S  +C + Q   ++ 
Sbjct: 717  QHRLPAGHNAQVAVMSYSCYDIEDALIMNKSSLDRGFGRTAVYKKSVTECEINQRNKESR 776

Query: 1030 -HDRILGPLLEADT--RKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMA 1086
             ++RI  P  +     +K + ++ ALD DGI   G Q+    + VNK  P +  +     
Sbjct: 777  FNERIDEPPTKTHNTKKKFIKKYHALDNDGITKVGAQLHHGDIYVNKKTPQVPDNP-QTE 835

Query: 1087 TPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAF----LIKMLLRQTRRPEIGDKFSSRHGQ 1142
              +  + P  +K   P  +++VL+ +N+ D       IK + RQ RRPE GDKFSSRHGQ
Sbjct: 836  NIQIADTPSVFKEKWPYTVDRVLIINNTNDGTEKIKTIKTIFRQIRRPEFGDKFSSRHGQ 895

Query: 1143 KGVIGLIVEQEDMPFNESGICPDIIMNPHG 1172
            KGV+GLIV QEDMPFNE G CPD+IMNPHG
Sbjct: 896  KGVVGLIVNQEDMPFNERGWCPDLIMNPHG 925



 Score =  251 bits (641), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 116/193 (60%), Positives = 144/193 (74%), Gaps = 4/193 (2%)

Query: 1184 EVPVSYKGSVPSYLEKVLVSSNSEDAF----LIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1239
            + P  +K   P  +++VL+ +N+ D       IK + RQ RRPE GDKFSSRHGQKGV+G
Sbjct: 841  DTPSVFKEKWPYTVDRVLIINNTNDGTEKIKTIKTIFRQIRRPEFGDKFSSRHGQKGVVG 900

Query: 1240 LIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTK 1299
            LIV QEDMPFNE G CPD+IMNPHGYPSRMT+ KL+ELL GK G +EG +K GTAFGG  
Sbjct: 901  LIVNQEDMPFNERGWCPDLIMNPHGYPSRMTIAKLMELLCGKLGALEGKFKYGTAFGGEN 960

Query: 1300 LVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPR 1359
            ++ V EEL++ G++YQGKD   SGITGE +E Y+Y GP++YQ+LKHMV DKIHAR++GP 
Sbjct: 961  VLQVGEELLKRGFHYQGKDCLISGITGEYMECYVYQGPIFYQRLKHMVIDKIHARAKGPM 1020

Query: 1360 VVLTRQPTGRRWK 1372
              LTRQP   R K
Sbjct: 1021 EKLTRQPVEGRAK 1033



 Score =  167 bits (423), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 78/144 (54%), Positives = 108/144 (75%), Gaps = 2/144 (1%)

Query: 197 ITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVSGPRS 256
           IT  L  AI+TG WTI+RF M+RQGVTQ+L+R+SY S LGM+T++ SQ +KT KVSGPR+
Sbjct: 398 ITKGLNRAIKTGKWTIQRFHMDRQGVTQLLARISYTSALGMLTKMRSQVQKTLKVSGPRA 457

Query: 257 LQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMFNGEE 316
           L GSQ+GM+CP+DTP+GE CGLVK LAL+THIT E+ + ++ KI+ ++G+E I  F   E
Sbjct: 458 LVGSQFGMICPADTPDGEDCGLVKTLALLTHITQEDIQDSVYKIILSMGVEDICHFKPSE 517

Query: 317 LSSPGVYLVFVNGILAGITCHHKE 340
                 Y+V++NGI+ G+    +E
Sbjct: 518 FHKN--YIVYLNGIIVGMHARPQE 539



 Score =  120 bits (301), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 60/131 (45%), Positives = 81/131 (61%), Gaps = 15/131 (11%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKR 751
           F  F+  GKIEYLDVNE +++ IA++ + +    TTHLEI   T+L    G         
Sbjct: 608 FSSFVKNGKIEYLDVNESDNAFIALTINDVTME-TTHLEIDQMTILSCVTG--------- 657

Query: 752 FHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTI 811
                LVP+PHHNQ+ RNT+QC MGKQ++G IG N Q R DT +Y L+Y Q P+V + ++
Sbjct: 658 -----LVPFPHHNQSARNTFQCQMGKQSLGIIGMNTQIRCDTQLYQLIYPQTPLVRTVSM 712

Query: 812 RITNFHKLPAG 822
              N H+LPAG
Sbjct: 713 EAVNQHRLPAG 723



 Score = 66.6 bits (161), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/94 (43%), Positives = 58/94 (61%)

Query: 439 KLRQKRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDM 498
           KL   +F        D AR+ L+   +AH+      F  KA+YL  M+RR++LA+ D   
Sbjct: 274 KLITSKFGGQSSNLADQAREKLAQVFLAHVNCKKYDFYPKAIYLGQMVRRLILAMEDKRF 333

Query: 499 LDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSEL 532
           +DD+DYYGNKR+  AG+LL L+FED+FK  NS +
Sbjct: 334 VDDKDYYGNKRMRCAGNLLELLFEDLFKGLNSTI 367



 Score = 59.3 bits (142), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/55 (50%), Positives = 37/55 (67%), Gaps = 1/55 (1%)

Query: 358 PHECRLRDLTYSAPITVDIE-YTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKTE 411
           PHECRL D TY+  I V++  + +G + +   D++IGRMPIML S KC L  KTE
Sbjct: 83  PHECRLNDQTYAGDIYVNVRIHMKGREPIEEKDVLIGRMPIMLGSKKCNLSGKTE 137



 Score = 48.9 bits (115), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 40/62 (64%), Gaps = 2/62 (3%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQA--NANIYSDVDPLFYLKYLDI 169
           I +K KL+ S+L  +GL K HIDSF+YFI   +++++++  N  I  + D  F L+YL I
Sbjct: 2   ISEKDKLITSYLSFRGLQKQHIDSFNYFIEQRLEQIVKSPLNQRITCESDSSFLLEYLSI 61

Query: 170 HV 171
            V
Sbjct: 62  RV 63


>gi|253741841|gb|EES98701.1| DNA-directed RNA polymerase subunit B' [Giardia intestinalis ATCC
            50581]
          Length = 1239

 Score =  269 bits (687), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 131/270 (48%), Positives = 180/270 (66%), Gaps = 13/270 (4%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRN YQC+MGKQA G I +NQ  R +T M+ L Y QRP+  +K +++T 
Sbjct: 766  GLIPYPHHNQSPRNCYQCSMGKQASGAIAFNQFERFETAMFLLDYPQRPLTSTKILKLTG 825

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQ---- 1028
            + +LPAGQNAT+ VMSYS +DIEDALI+N++++DRGFGRC +YR+    L    ++    
Sbjct: 826  YERLPAGQNATVCVMSYSSFDIEDALILNRSAIDRGFGRCSIYRSVSAELNSTGSKSVDG 885

Query: 1029 THDRILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATP 1088
            T D +LGP    D  K    + A++ DG+ A G  +    +++NK     ++  +S   P
Sbjct: 886  TKDVLLGP--PKDHLKQYESYHAVEDDGLCAVGAHLKTGDIVINKGRHVTNIPGLSDG-P 942

Query: 1089 EYKEVPVSYKGSVPS------YLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQ 1142
            E  E  +    S+ S      Y++KVLV++N++   LIK+L R+ RRPE+GDKFSSRHGQ
Sbjct: 943  EAAETLIKSPESLKSPLETITYIDKVLVTTNNDGNLLIKVLTREPRRPEVGDKFSSRHGQ 1002

Query: 1143 KGVIGLIVEQEDMPFNESGICPDIIMNPHG 1172
            KGV GLIV Q D+PF   GI PD+IMNPHG
Sbjct: 1003 KGVCGLIVSQSDLPFTSQGIVPDLIMNPHG 1032



 Score =  223 bits (569), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 103/181 (56%), Positives = 135/181 (74%), Gaps = 5/181 (2%)

Query: 1195 SYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGI 1254
            +Y++KVLV++N++   LIK+L R+ RRPE+GDKFSSRHGQKGV GLIV Q D+PF   GI
Sbjct: 963  TYIDKVLVTTNNDGNLLIKVLTREPRRPEVGDKFSSRHGQKGVCGLIVSQSDLPFTSQGI 1022

Query: 1255 CPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTK----LVDVQEELIRH 1310
             PD+IMNPHGYPSRMTV KL+ELL+ K+    G   +GT F        + ++ + L   
Sbjct: 1023 VPDLIMNPHGYPSRMTVAKLLELLSNKSSCFRGEQTDGTCFRTKTDEEFIAELYDSLRAA 1082

Query: 1311 GYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPT-GR 1369
            G++Y GKD+ YSG+TG+ +  YI++GP+YYQKLKHMV+DKIH+R  GP  +LTRQPT GR
Sbjct: 1083 GFSYSGKDVLYSGLTGDVIPVYIFNGPIYYQKLKHMVKDKIHSRGTGPITMLTRQPTEGR 1142

Query: 1370 R 1370
            R
Sbjct: 1143 R 1143



 Score =  148 bits (374), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 71/151 (47%), Positives = 105/151 (69%), Gaps = 1/151 (0%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQ 244
            +D+V+ +    IT A  +AI TGNW I R  ++R GV+QVLSRLSYIS LG +TR++S 
Sbjct: 492 NYDVVSLVDPSIITRAFNSAISTGNWKIERIGVDRVGVSQVLSRLSYISTLGQVTRLSST 551

Query: 245 FEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNI 304
           F+K  K SGPR L  SQ G+ CPSDTPEGE+ G+VKNL++M  I+ + +  ++ K++ +I
Sbjct: 552 FDKAMKSSGPRMLNFSQMGIFCPSDTPEGESVGIVKNLSIMARISKDENADSISKLLMSI 611

Query: 305 GIEHIA-MFNGEELSSPGVYLVFVNGILAGI 334
           G+E +A  ++G+  S    Y+VF+NG + G+
Sbjct: 612 GVEDLASCWSGDTFSLGYGYMVFLNGTIKGV 642



 Score =  135 bits (339), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 64/134 (47%), Positives = 86/134 (64%), Gaps = 15/134 (11%)

Query: 690 KRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYN 749
           K F DF+YEGK+EYLDVNE  +++IA+    + P   TH EI  +TLLG   G       
Sbjct: 715 KCFVDFIYEGKVEYLDVNEAKNAYIAMDTKDLTPQ-HTHCEIESYTLLGYVVG------- 766

Query: 750 KRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESK 809
                  L+PYPHHNQ+PRN YQC+MGKQA G I +NQ  R +T M+ L Y QRP+  +K
Sbjct: 767 -------LIPYPHHNQSPRNCYQCSMGKQASGAIAFNQFERFETAMFLLDYPQRPLTSTK 819

Query: 810 TIRITNFHKLPAGK 823
            +++T + +LPAG+
Sbjct: 820 ILKLTGYERLPAGQ 833



 Score = 64.3 bits (155), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 80/161 (49%), Gaps = 6/161 (3%)

Query: 369 SAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKTEYTSSSRRASTSSVTMHS 428
           ++P+ +  + +  S R   +  V+  +P++ + +   +    +  +S+  AS +SV+ H+
Sbjct: 309 TSPVAMTAKASIESARDCLAHFVLSHIPVVERLNLQQVAQNIQPQTSASTASNTSVSTHT 368

Query: 429 QRTSPLLSCKKLRQKRFQTYKKTPVDDARDFLSSTCIAHIPVINM-RFKM--KAMYLAVM 485
             T+  +  K           K  +      ++S   +  P +NM RF    KA+YLA M
Sbjct: 369 GTTATSVGGK---SGSVSAMAKPAIGSGASVVASNTGSTAPPVNMARFNWLPKAVYLATM 425

Query: 486 IRRMVLALSDPDMLDDRDYYGNKRLELAGSLLSLMFEDVFK 526
           +RR +L        D +D+ GNK++E AG LL L+F+D FK
Sbjct: 426 VRRAILFDFGVIKGDSKDFVGNKKIETAGDLLELIFDDAFK 466



 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/56 (48%), Positives = 42/56 (75%), Gaps = 2/56 (3%)

Query: 357 TPHECRLRDLTYSAPITVDIEYTRGSQRVVR--SDLVIGRMPIMLQSSKCVLRNKT 410
           TPHECR R++TY+APIT+D+     ++  V+   D+ IG +PIML+S++C+L NK+
Sbjct: 99  TPHECRQRNMTYAAPITIDVRCRASNKSSVQYYKDICIGYIPIMLRSNRCILANKS 154



 Score = 44.3 bits (103), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 35/58 (60%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           D+W+L+ S+L  + + K H+DSF++ ++V I  +++ N  +     P FYL+   + V
Sbjct: 20  DRWRLIHSYLMTESITKHHLDSFNHLLDVTIPAIIKENPLLVVAKHPHFYLRIEKVDV 77


>gi|326429748|gb|EGD75318.1| RNA polymerase II [Salpingoeca sp. ATCC 50818]
          Length = 1139

 Score =  267 bits (683), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 129/215 (60%), Positives = 164/215 (76%), Gaps = 7/215 (3%)

Query: 1165 DIIMN---PHG--LKGCDRITEYKEVPVSYKGS--VPSYLEKVLVSSNSEDAFLIKMLLR 1217
            D+++N   P G  ++G  R T Y   PV +KG+    +Y ++V V+S+SE+  +IK+ +R
Sbjct: 832  DVLVNKEVPAGTVMEGNKRRTVYTPAPVKFKGAEGCDAYCDQVAVTSSSENYMIIKIRVR 891

Query: 1218 QTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIEL 1277
             TR PE+GDKFSSRHGQKGV GLIV QEDMPFN+ G+CPD+IMNPHG+PSRMTVGKL+EL
Sbjct: 892  STRIPELGDKFSSRHGQKGVCGLIVNQEDMPFNDQGVCPDMIMNPHGFPSRMTVGKLMEL 951

Query: 1278 LAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGP 1337
            + GKA ++ GN+  GTAFGGT L ++ E L+ HGYNY GK+   SGITGE LEAYI+ GP
Sbjct: 952  VGGKAAVLSGNFNYGTAFGGTPLEEMCETLVDHGYNYHGKEFLTSGITGEPLEAYIFFGP 1011

Query: 1338 VYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
            VYYQKLKHMV DK+HAR+ GP  +LTRQPT  R +
Sbjct: 1012 VYYQKLKHMVMDKMHARATGPITLLTRQPTEGRSR 1046



 Score =  219 bits (559), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 125/277 (45%), Positives = 162/277 (58%), Gaps = 36/277 (12%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRNTYQCAMGKQAMG I YN Q RIDTL+Y L+Y QRP+V++KTI + +
Sbjct: 683  GLIPYPHHNQSPRNTYQCAMGKQAMGVIAYNYQRRIDTLLYALMYPQRPLVKTKTIELID 742

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLK---QYPNQT 1029
            F KLPAGQ +  A +  SG                       YR S+ + +   + P+ T
Sbjct: 743  FEKLPAGQVSCEARVCASGPRW--------------------YRRSRRIPQGQSKPPSHT 782

Query: 1030 HDRILGPLLEADTRKP-------VYRHRALDQDGI----VAPGEQICERQVLVNKSMPTI 1078
                        TR P         RHR      I    + P   +  + VLVNK +P  
Sbjct: 783  TTTSGVRFCTYATRVPGVCVRFATMRHRFTVAAAIHHVHLHPVSALSHQDVLVNKEVPAG 842

Query: 1079 SVSAISMATPEYKEVPVSYKGS--VPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKF 1136
            +V   +     Y   PV +KG+    +Y ++V V+S+SE+  +IK+ +R TR PE+GDKF
Sbjct: 843  TVMEGNKRRTVYTPAPVKFKGAEGCDAYCDQVAVTSSSENYMIIKIRVRSTRIPELGDKF 902

Query: 1137 SSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            SSRHGQKGV GLIV QEDMPFN+ G+CPD+IMNPHG 
Sbjct: 903  SSRHGQKGVCGLIVNQEDMPFNDQGVCPDMIMNPHGF 939



 Score =  211 bits (538), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 96/161 (59%), Positives = 122/161 (75%)

Query: 175 DKIIPKIKAAQFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISG 234
           D    ++ A  FD    +R + IT A+  AI +GNW ++RF+MER GVT VLSRLS+I+ 
Sbjct: 402 DHTFVRVTARAFDPAQIIRANPITQAINYAISSGNWNLKRFRMERAGVTSVLSRLSFIAA 461

Query: 235 LGMMTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDE 294
           LGMMTRI SQFEKTRKVSGPRSLQ SQWGMLCPSDTPEGE CGLVKNLALM+++T + DE
Sbjct: 462 LGMMTRITSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGETCGLVKNLALMSYVTVDVDE 521

Query: 295 KNMLKIMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAGIT 335
             ++++ YN+G+E + + NGEE S    Y+VFVNG + G+T
Sbjct: 522 APLIRLAYNLGVEGLNLVNGEEFSHEDTYVVFVNGTMLGVT 562



 Score =  165 bits (418), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 82/137 (59%), Positives = 97/137 (70%), Gaps = 15/137 (10%)

Query: 687 LGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELL 746
           LG   FDDF+  G +EYLDVNE NDS IA+ E  +    TTHLEI PFT+LG CAG    
Sbjct: 629 LGILHFDDFIRLGVVEYLDVNELNDSLIALYEKDMCEE-TTHLEIEPFTVLGACAG---- 683

Query: 747 QYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMV 806
                     L+PYPHHNQ+PRNTYQCAMGKQAMG I YN Q RIDTL+Y L+Y QRP+V
Sbjct: 684 ----------LIPYPHHNQSPRNTYQCAMGKQAMGVIAYNYQRRIDTLLYALMYPQRPLV 733

Query: 807 ESKTIRITNFHKLPAGK 823
           ++KTI + +F KLPAG+
Sbjct: 734 KTKTIELIDFEKLPAGQ 750



 Score = 95.5 bits (236), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/95 (46%), Positives = 64/95 (67%)

Query: 439 KLRQKRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDM 498
           ++ ++ +   ++T  D+AR  L+S  ++HI V N   + K +YL VM RRM+ A+ +   
Sbjct: 304 RIPRREYGPSRRTKEDEARSILASVVLSHIEVRNFDMRPKCIYLCVMARRMIAAIRNKSG 363

Query: 499 LDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
            DDRDYYGNKRLELAGSL++L+FED FK  N  +K
Sbjct: 364 GDDRDYYGNKRLELAGSLMALLFEDSFKTLNGRIK 398



 Score = 76.3 bits (186), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/76 (46%), Positives = 52/76 (68%), Gaps = 5/76 (6%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           I DKW+L+ SFL+ KGLV+ H+DSF++F+ ++I  +++AN+ I SDV+P  YL+Y  I V
Sbjct: 35  IEDKWRLLPSFLQLKGLVRQHVDSFNHFVEIDIHNIVKANSKIVSDVNPRVYLEYTSIRV 94

Query: 172 GIADKIIPKIKAAQFD 187
           G      P I+   FD
Sbjct: 95  G-----EPVIQNGPFD 105



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 56/105 (53%), Gaps = 12/105 (11%)

Query: 304 IGIEHIAMFNGEELS--SPGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHEC 361
           I I +I   N + +S  +P VYL + +            V +P I+         TP EC
Sbjct: 65  IDIHNIVKANSKIVSDVNPRVYLEYTS----------IRVGEPVIQNGPFDDHDVTPMEC 114

Query: 362 RLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVL 406
           RLR+ TY+AP+ V++  +   +    +D++IGR+PIML+S KC L
Sbjct: 115 RLRNTTYAAPMHVNVRLSLSGEVRNYNDILIGRLPIMLRSKKCRL 159


>gi|300709367|ref|XP_002996849.1| hypothetical protein NCER_100041 [Nosema ceranae BRL01]
 gi|239606175|gb|EEQ83178.1| hypothetical protein NCER_100041 [Nosema ceranae BRL01]
          Length = 1091

 Score =  267 bits (683), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 137/264 (51%), Positives = 180/264 (68%), Gaps = 21/264 (7%)

Query: 910  HSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIR 969
            +  GL+P+P+HNQ+PRNTYQCAMGKQA+G I  N + R D +   L   Q+P+  ++ + 
Sbjct: 654  YVAGLIPFPNHNQSPRNTYQCAMGKQAIGYIALNSKKRFDGISLQLCNTQKPLTTTQILN 713

Query: 970  ITNFHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQT 1029
            IT+++++PAGQNA +AVMSYSGYDIEDALI+NK SLDRGF R  VY+    VLK+Y +  
Sbjct: 714  ITDYNEIPAGQNAMVAVMSYSGYDIEDALIINKDSLDRGFARTEVYKTHCYVLKKYSDNR 773

Query: 1030 HDRILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPE 1089
             D IL      D + P+     LD+DGI  PGE + E  V +NK+ P             
Sbjct: 774  SDVIL-----PDIKNPI-----LDKDGIGKPGELLLEGTVYINKNSP---------CENG 814

Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
            YK     +KG+ P+++++VL++  SED  LIK+ LRQTR PEIGDKFSSRHGQKGV+GLI
Sbjct: 815  YKFTGGVHKGN-PAFIDRVLITK-SEDQTLIKICLRQTRVPEIGDKFSSRHGQKGVVGLI 872

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
            V Q +MPF +SG+ PDIIMNPHG 
Sbjct: 873  VPQINMPFTDSGLVPDIIMNPHGF 896



 Score =  241 bits (614), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 116/191 (60%), Positives = 149/191 (78%), Gaps = 2/191 (1%)

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
            YK     +KG+ P+++++VL++  SED  LIK+ LRQTR PEIGDKFSSRHGQKGV+GLI
Sbjct: 815  YKFTGGVHKGN-PAFIDRVLITK-SEDQTLIKICLRQTRVPEIGDKFSSRHGQKGVVGLI 872

Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
            V Q +MPF +SG+ PDIIMNPHG+PSRMTVGK+IELL GKAG++EG   + T F   ++ 
Sbjct: 873  VPQINMPFTDSGLVPDIIMNPHGFPSRMTVGKIIELLTGKAGIIEGKISDATIFKKNEVD 932

Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
             V + L  +G+N+ GKD FYSGI+GE + AYI+ GPV+YQ+LKHMV DKIH R+RGPR +
Sbjct: 933  LVCDILSNNGFNFGGKDCFYSGISGEPIYAYIFYGPVFYQRLKHMVADKIHMRARGPRAI 992

Query: 1362 LTRQPTGRRWK 1372
            LTRQPT  R +
Sbjct: 993  LTRQPTEGRSR 1003



 Score =  179 bits (453), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 86/184 (46%), Positives = 128/184 (69%), Gaps = 7/184 (3%)

Query: 175 DKIIPK-IKAAQFDIVN--HMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSY 231
           DKI+ K ++A +FD +   +++ + IT ++  AI +GNW +RRF+M+R GVT VL R SY
Sbjct: 370 DKILTKRLRAQEFDALTFFNLQTNIITTSMQRAISSGNWNLRRFRMDRSGVTHVLIRHSY 429

Query: 232 ISGLGMMTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTE 291
           IS +GMMT++NS FEKTRKVSGPR+L  S WGM CP+DTPEGE+CGLVKNL+L+  +TT+
Sbjct: 430 ISAVGMMTKVNSHFEKTRKVSGPRALHTSSWGMFCPADTPEGESCGLVKNLSLLAEVTTD 489

Query: 292 NDEKNMLKIMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAGITCHHKEVCKPEIEESFN 351
           +D   ++ I+ ++G+    +    E+ S  +YLVF+NG + G+T    + C   ++   N
Sbjct: 490 SDLDTIIYILSSLGVIQTGVLYTHEMVSDEMYLVFLNGDIFGVT----QNCFGLVKNFRN 545

Query: 352 YTRQ 355
           Y R+
Sbjct: 546 YRRK 549



 Score =  127 bits (318), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 61/137 (44%), Positives = 87/137 (63%), Gaps = 15/137 (10%)

Query: 687 LGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELL 746
           + +K FDD + +G+IEYLD NE ND+ IA+    I    TTHLEIA F +LG  AG    
Sbjct: 603 MKYKSFDDLVEDGRIEYLDANEENDALIALKIEDISDK-TTHLEIADFAILGYVAG---- 657

Query: 747 QYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMV 806
                     L+P+P+HNQ+PRNTYQCAMGKQA+G I  N + R D +   L   Q+P+ 
Sbjct: 658 ----------LIPFPNHNQSPRNTYQCAMGKQAIGYIALNSKKRFDGISLQLCNTQKPLT 707

Query: 807 ESKTIRITNFHKLPAGK 823
            ++ + IT+++++PAG+
Sbjct: 708 TTQILNITDYNEIPAGQ 724



 Score = 73.6 bits (179), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 35/68 (51%), Positives = 48/68 (70%), Gaps = 3/68 (4%)

Query: 344 PEIEESFNYTRQTT-PHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSS 402
           P +EE  N  + T  P ECRLRDLTY++ + +DIEY R  Q + + D+ IGR+PIMLQS 
Sbjct: 65  PSLEE--NMIKHTLYPMECRLRDLTYASNLYIDIEYVRNKQIIRKKDVFIGRIPIMLQSD 122

Query: 403 KCVLRNKT 410
           KC+L++K 
Sbjct: 123 KCLLKSKN 130



 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 52/83 (62%)

Query: 453 VDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLEL 512
           +++ R+ +    + ++    +  + K + + +M+RR++    +    +D+D+ GNKR EL
Sbjct: 286 LEEVRNVIVEKILPNVKFDGVDLRNKGIMICLMVRRLIFTQKNIITEEDKDFIGNKRFEL 345

Query: 513 AGSLLSLMFEDVFKRFNSELKET 535
           AG LLS++FED FK+FN ELK +
Sbjct: 346 AGQLLSILFEDSFKKFNWELKRS 368



 Score = 62.0 bits (149), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 40/57 (70%)

Query: 117 KLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGI 173
           +L+  F  EKGL + HI+SF+YFIN EI  +++AN  + SD+D  FYLKY D+ + +
Sbjct: 8   ELIKKFFFEKGLARQHIESFNYFINHEIASIVKANDIVDSDIDHTFYLKYTDVRISV 64


>gi|401827970|ref|XP_003888277.1| RNA polymerase subunit beta [Encephalitozoon hellem ATCC 50504]
 gi|392999549|gb|AFM99296.1| RNA polymerase subunit beta [Encephalitozoon hellem ATCC 50504]
          Length = 1110

 Score =  267 bits (682), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 132/261 (50%), Positives = 175/261 (67%), Gaps = 21/261 (8%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GLVP+PHHNQ+PRNTYQCAMGKQA+G I  N + R D ++  L Y  RPMV +K + + N
Sbjct: 677  GLVPFPHHNQSPRNTYQCAMGKQAIGHISLNVKKRFDPVILQLTYTHRPMVSTKILDLIN 736

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            ++++PAGQNA +AVMSYSGYDIEDAL++NK S++RG  R  VY+ +  +LK++ +   D 
Sbjct: 737  YNEIPAGQNAMVAVMSYSGYDIEDALVLNKTSIERGLFRVEVYKTTTTLLKKHSSGMSDV 796

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKE 1092
            +           P  +   LD+DG+  PG  + +  + VNK  P   +         YK 
Sbjct: 797  LW----------PNPKESVLDEDGLGKPGRMVKDGTIYVNKMSPVEGI---------YKF 837

Query: 1093 VPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQ 1152
                ++G  P+Y++KVL+ + S+D  LIK +LRQTR PEIGDK SSRHGQKGV+GLIV Q
Sbjct: 838  TGKVHRGD-PAYIDKVLI-TKSQDQVLIKTMLRQTRPPEIGDKLSSRHGQKGVVGLIVRQ 895

Query: 1153 EDMPFNESGICPDIIMNPHGL 1173
            EDMPFN+ GI PDIIMNPHG 
Sbjct: 896  EDMPFNDQGIVPDIIMNPHGF 916



 Score =  249 bits (637), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 118/179 (65%), Positives = 141/179 (78%), Gaps = 1/179 (0%)

Query: 1194 PSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESG 1253
            P+Y++KVL++  S+D  LIK +LRQTR PEIGDK SSRHGQKGV+GLIV QEDMPFN+ G
Sbjct: 846  PAYIDKVLIT-KSQDQVLIKTMLRQTRPPEIGDKLSSRHGQKGVVGLIVRQEDMPFNDQG 904

Query: 1254 ICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYN 1313
            I PDIIMNPHG+PSRMTVGK+IEL++GKAGLMEG   + TAF    + +    L RHG++
Sbjct: 905  IVPDIIMNPHGFPSRMTVGKIIELISGKAGLMEGKIFDSTAFKENSVEETCNILSRHGFS 964

Query: 1314 YQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
            Y GKD F SG TG  L AYI+ GPV+YQ+LKHMV DKIH R+RGPR +LTRQPT  R K
Sbjct: 965  YSGKDCFTSGTTGAPLTAYIFFGPVFYQRLKHMVADKIHMRARGPRAILTRQPTEGRSK 1023



 Score =  185 bits (470), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 108/257 (42%), Positives = 154/257 (59%), Gaps = 29/257 (11%)

Query: 106 LKDSPEIRDKWKLVLSFLKEKGLVKPHIDSFDY-----FINVEIKKLMQANANIYSDVDP 160
           +K  PE  ++ + VL+ L EK L    ++  +      +I + I++L Q   NI  + D 
Sbjct: 277 IKLRPE-DNRIEEVLTILSEKVLPNVQVEGCNLRKKGIYIALMIRRLTQTRLNILKEDDK 335

Query: 161 LFY-------------------LKYLDIHVGIA-DKIIPK-IKAAQFDIVN--HMRQDTI 197
            F                     K  +  +  + DKI+ K  +A +FD +   +++ + I
Sbjct: 336 DFVGNKRFELAGQLLSILFEDTFKRFNFELKKSIDKILSKRSRAQEFDALTFLNLQANMI 395

Query: 198 TNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVSGPRSL 257
           T+ L+ AI TGNW ++RF+MER GVT VLSR SYIS LGMMT+INS FEKTRKVSGPRSL
Sbjct: 396 TSTLSRAISTGNWNLKRFRMERSGVTHVLSRHSYISALGMMTKINSHFEKTRKVSGPRSL 455

Query: 258 QGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMFNGEEL 317
             S WGMLCP DTPEGE+CGLVKNLAL+  ITT++D + +L +++ +G+  I      E+
Sbjct: 456 HTSSWGMLCPVDTPEGESCGLVKNLALLAEITTDSDVRPVLDLIFKLGVVDINSVYTREI 515

Query: 318 SSPGVYLVFVNGILAGI 334
              G++ VF+NG + GI
Sbjct: 516 HQNGMFSVFLNGDIIGI 532



 Score =  134 bits (338), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 69/145 (47%), Positives = 91/145 (62%), Gaps = 17/145 (11%)

Query: 679 TFLNMHQFLGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLG 738
           TFL+   +L +K F D L EG IEYLDVNE ND  +A+    +    TTHLEI+ F +LG
Sbjct: 617 TFLDC--YLKYKSFSDLLEEGFIEYLDVNEENDCLVALKPEDMVEE-TTHLEISEFAILG 673

Query: 739 VCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNL 798
             AG              LVP+PHHNQ+PRNTYQCAMGKQA+G I  N + R D ++  L
Sbjct: 674 YVAG--------------LVPFPHHNQSPRNTYQCAMGKQAIGHISLNVKKRFDPVILQL 719

Query: 799 VYAQRPMVESKTIRITNFHKLPAGK 823
            Y  RPMV +K + + N++++PAG+
Sbjct: 720 TYTHRPMVSTKILDLINYNEIPAGQ 744



 Score = 78.2 bits (191), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/82 (47%), Positives = 53/82 (64%), Gaps = 3/82 (3%)

Query: 344 PEIEESF-NYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSS 402
           P +EE+  NY     P ECRLRD+TYSA I VDIEY R  Q +V+ D+ IG+MP+ML+SS
Sbjct: 65  PSVEENMVNY--NVFPIECRLRDMTYSANIYVDIEYVRNRQIIVKRDVCIGKMPVMLRSS 122

Query: 403 KCVLRNKTEYTSSSRRASTSSV 424
           +C LR + + +    RA    +
Sbjct: 123 RCHLRKEAKISIEGNRAKDRKI 144



 Score = 73.6 bits (179), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 35/83 (42%), Positives = 53/83 (63%)

Query: 453 VDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLEL 512
           +++    LS   + ++ V     + K +Y+A+MIRR+     +    DD+D+ GNKR EL
Sbjct: 286 IEEVLTILSEKVLPNVQVEGCNLRKKGIYIALMIRRLTQTRLNILKEDDKDFVGNKRFEL 345

Query: 513 AGSLLSLMFEDVFKRFNSELKET 535
           AG LLS++FED FKRFN ELK++
Sbjct: 346 AGQLLSILFEDTFKRFNFELKKS 368



 Score = 73.2 bits (178), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/59 (55%), Positives = 46/59 (77%)

Query: 115 KWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGI 173
           + +L+  F KEKGLV+ HI+S+DYF++ EIK L++AN  + SD+D  FYLKYLDI VG+
Sbjct: 6   RLELIKLFFKEKGLVRQHIESYDYFVDHEIKALVRANQIVDSDIDHTFYLKYLDIRVGM 64


>gi|308161806|gb|EFO64240.1| DNA-directed RNA polymerase subunit B' [Giardia lamblia P15]
          Length = 1239

 Score =  265 bits (678), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 131/269 (48%), Positives = 178/269 (66%), Gaps = 11/269 (4%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRN YQC+MGKQA G I +NQ  R +T M+ L Y QRP+  +K +++T 
Sbjct: 766  GLIPYPHHNQSPRNCYQCSMGKQASGAIAFNQLERFETAMFLLDYPQRPLTSTKILKLTG 825

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + +LPAGQNAT+ VMSYS +DIEDALI+N+ ++DRGFGRC +YR+    L    +++ D 
Sbjct: 826  YERLPAGQNATVCVMSYSSFDIEDALILNRNAIDRGFGRCSIYRSISTELNSIGSKSVDG 885

Query: 1033 I----LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAIS---M 1085
            I    LGP    D  K    + A++ DG+ A G  +    +++NK     ++  +S    
Sbjct: 886  IKDILLGP--PKDHLKQYEGYHAIEDDGLCAVGAHLKTGDIVINKGRHITNIPGLSDGTE 943

Query: 1086 ATPEYKEVPVSYKG--SVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1143
            AT    + P S K      +Y++KVLV++N +   LIK+L R+ RRPE+GDKFSSRHGQK
Sbjct: 944  ATVSLIKSPESLKSPLETTTYIDKVLVTTNGDGNMLIKVLTREPRRPEVGDKFSSRHGQK 1003

Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHG 1172
            GV GLIV Q D+PF   GI PD+IMNPHG
Sbjct: 1004 GVCGLIVPQSDLPFTSQGIVPDLIMNPHG 1032



 Score =  227 bits (578), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 114/212 (53%), Positives = 146/212 (68%), Gaps = 8/212 (3%)

Query: 1167 IMNPHGLK-GCDRITEYKEVPVSYKG--SVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPE 1223
            I N  GL  G +      + P S K      +Y++KVLV++N +   LIK+L R+ RRPE
Sbjct: 932  ITNIPGLSDGTEATVSLIKSPESLKSPLETTTYIDKVLVTTNGDGNMLIKVLTREPRRPE 991

Query: 1224 IGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAG 1283
            +GDKFSSRHGQKGV GLIV Q D+PF   GI PD+IMNPHGYPSRMTV KL+ELL+ K+G
Sbjct: 992  VGDKFSSRHGQKGVCGLIVPQSDLPFTSQGIVPDLIMNPHGYPSRMTVAKLLELLSNKSG 1051

Query: 1284 LMEGNYKEGTAF----GGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVY 1339
               G   +GT F      T L ++ + L   G++Y GKD+ YSG+TG+ +  YI++GP+Y
Sbjct: 1052 CFRGEQTDGTCFRTKTDETFLAELYDSLRVAGFSYSGKDVLYSGLTGDVIPVYIFNGPIY 1111

Query: 1340 YQKLKHMVQDKIHARSRGPRVVLTRQPT-GRR 1370
            YQKLKHMV+DKIH+R  GP  +LTRQPT GRR
Sbjct: 1112 YQKLKHMVKDKIHSRGTGPITMLTRQPTEGRR 1143



 Score =  148 bits (373), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 71/151 (47%), Positives = 103/151 (68%), Gaps = 1/151 (0%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQ 244
            +DIV+ +    IT A   AI TGNW I +  ++R GV+QVLSRLSYIS LG +TR++S 
Sbjct: 492 NYDIVSLVDSSIITRAFNTAISTGNWKIEKIGVDRVGVSQVLSRLSYISALGQVTRLSST 551

Query: 245 FEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNI 304
           F+K  K SGPR L  SQ G+ CPSDTPEGE+ G+VKNL++M  I+ +    ++ K++ +I
Sbjct: 552 FDKAMKSSGPRMLNFSQMGIFCPSDTPEGESVGIVKNLSIMARISKDESTDSISKLLMSI 611

Query: 305 GIEHIA-MFNGEELSSPGVYLVFVNGILAGI 334
           G+E +A  ++G+  S    Y+VF+NG + G+
Sbjct: 612 GVEDLASCWSGDTFSLGYGYMVFLNGTIKGV 642



 Score =  133 bits (334), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 63/134 (47%), Positives = 86/134 (64%), Gaps = 15/134 (11%)

Query: 690 KRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYN 749
           K F D +YEGK+EYLDVNE  +++IA+    + P   TH EI  +TLLG           
Sbjct: 715 KCFVDLIYEGKVEYLDVNEAKNAYIAMDTKDLTPQ-HTHCEIESYTLLG----------- 762

Query: 750 KRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESK 809
              +  GL+PYPHHNQ+PRN YQC+MGKQA G I +NQ  R +T M+ L Y QRP+  +K
Sbjct: 763 ---YVVGLIPYPHHNQSPRNCYQCSMGKQASGAIAFNQLERFETAMFLLDYPQRPLTSTK 819

Query: 810 TIRITNFHKLPAGK 823
            +++T + +LPAG+
Sbjct: 820 ILKLTGYERLPAGQ 833



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/56 (48%), Positives = 42/56 (75%), Gaps = 2/56 (3%)

Query: 357 TPHECRLRDLTYSAPITVDIEYTRGSQRVVR--SDLVIGRMPIMLQSSKCVLRNKT 410
           TPHECR R++TY+APIT+D+     ++  V+   D+ IG +PIML+S++C+L NK+
Sbjct: 99  TPHECRQRNMTYAAPITIDVRCKASNKSSVQYYKDICIGYIPIMLRSNRCILTNKS 154



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/49 (51%), Positives = 33/49 (67%)

Query: 478 KAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGSLLSLMFEDVFK 526
           KA+YLA MIRR +L        D +D+ GNK++E AG LL L+F+D FK
Sbjct: 418 KAVYLATMIRRAILFDFGVIKGDSKDFVGNKKIETAGDLLELIFDDAFK 466



 Score = 43.1 bits (100), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 17/58 (29%), Positives = 36/58 (62%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           D+W+L+ S+L  + + K H+DSF++ ++V I  +++ N+ +     P F+L+   + V
Sbjct: 20  DRWRLIHSYLMTESITKHHLDSFNHLLDVTIPAIIRENSLLVVAKHPQFHLRIEKVDV 77


>gi|159119582|ref|XP_001710009.1| DNA-directed RNA polymerase subunit B' [Giardia lamblia ATCC 50803]
 gi|157438127|gb|EDO82335.1| DNA-directed RNA polymerase subunit B [Giardia lamblia ATCC 50803]
          Length = 1238

 Score =  264 bits (675), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 130/269 (48%), Positives = 179/269 (66%), Gaps = 11/269 (4%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYPHHNQ+PRN YQC+MGKQA G I +NQ  R +T M+ L Y Q+P+  +K +++T 
Sbjct: 765  GLIPYPHHNQSPRNCYQCSMGKQASGAIAFNQLERFETAMFLLDYPQQPLTSTKILKLTG 824

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + +LPAGQNAT+ VMSYS +DIEDALI+N+ ++DRGFGRC +YR+    L    +++ D 
Sbjct: 825  YERLPAGQNATVCVMSYSSFDIEDALILNRNAIDRGFGRCSIYRSVSTELNSIGSKSVDG 884

Query: 1033 I----LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAIS---M 1085
            I    LGP    D  K    + A++ DG+ A G  +    +++NK     ++  +S    
Sbjct: 885  IKDILLGP--PKDHLKQYEGYHAIEDDGLCAVGAHLKTGDIVINKGRHITNIPGLSDGTE 942

Query: 1086 ATPEYKEVPVSYKGSVP--SYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1143
            AT    + P S K  +   +Y++KVLV++N +   LIK+L R+ RRPE+GDKFSSRHGQK
Sbjct: 943  ATASLIKAPESLKSPLETITYVDKVLVTTNGDGNMLIKVLTREPRRPEVGDKFSSRHGQK 1002

Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHG 1172
            GV GLIV Q D+PF   GI PD+IMNPHG
Sbjct: 1003 GVCGLIVPQSDLPFTSQGIVPDLIMNPHG 1031



 Score =  227 bits (578), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 114/212 (53%), Positives = 147/212 (69%), Gaps = 8/212 (3%)

Query: 1167 IMNPHGLK-GCDRITEYKEVPVSYKGSVPS--YLEKVLVSSNSEDAFLIKMLLRQTRRPE 1223
            I N  GL  G +      + P S K  + +  Y++KVLV++N +   LIK+L R+ RRPE
Sbjct: 931  ITNIPGLSDGTEATASLIKAPESLKSPLETITYVDKVLVTTNGDGNMLIKVLTREPRRPE 990

Query: 1224 IGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAG 1283
            +GDKFSSRHGQKGV GLIV Q D+PF   GI PD+IMNPHGYPSRMTV KL+ELL+ K+G
Sbjct: 991  VGDKFSSRHGQKGVCGLIVPQSDLPFTSQGIVPDLIMNPHGYPSRMTVAKLLELLSNKSG 1050

Query: 1284 LMEGNYKEGTAF----GGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVY 1339
               G   +GT F      T L ++ + L   G++Y GKD+ YSG+TG+ +  YI++GP+Y
Sbjct: 1051 CFRGEQTDGTCFRTKTDETFLAELYDSLRVAGFSYSGKDVLYSGLTGDVIPVYIFNGPIY 1110

Query: 1340 YQKLKHMVQDKIHARSRGPRVVLTRQPT-GRR 1370
            YQKLKHMV+DKIH+R  GP  +LTRQPT GRR
Sbjct: 1111 YQKLKHMVKDKIHSRGTGPITMLTRQPTEGRR 1142



 Score =  147 bits (371), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 70/151 (46%), Positives = 104/151 (68%), Gaps = 1/151 (0%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQ 244
            +DIV+ +    IT A  +AI TGNW I +  ++R GV+Q+LSRLSYIS LG +TR++S 
Sbjct: 491 NYDIVSLVDPSIITRAFNSAISTGNWKIEKIGVDRVGVSQILSRLSYISALGQVTRLSST 550

Query: 245 FEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNI 304
           F+K  K SGPR L  SQ G+ CPSDTPEGE+ G+VKNL++M  I+ +    ++ K++ +I
Sbjct: 551 FDKAMKSSGPRMLNFSQMGIFCPSDTPEGESVGIVKNLSIMARISKDESTDSISKLLMSI 610

Query: 305 GIEHIA-MFNGEELSSPGVYLVFVNGILAGI 334
           G+E +A  ++G+  S    Y+VF+NG + G+
Sbjct: 611 GVEDLASCWSGDTFSLGYGYMVFLNGTIKGV 641



 Score =  131 bits (329), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 62/134 (46%), Positives = 86/134 (64%), Gaps = 15/134 (11%)

Query: 690 KRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYN 749
           K F D +YEGK+EYLDVNE  +++IA+    + P   TH EI  +TLLG           
Sbjct: 714 KCFVDLIYEGKVEYLDVNEAKNAYIAMDTKDLTPQ-HTHCEIESYTLLG----------- 761

Query: 750 KRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESK 809
              +  GL+PYPHHNQ+PRN YQC+MGKQA G I +NQ  R +T M+ L Y Q+P+  +K
Sbjct: 762 ---YVVGLIPYPHHNQSPRNCYQCSMGKQASGAIAFNQLERFETAMFLLDYPQQPLTSTK 818

Query: 810 TIRITNFHKLPAGK 823
            +++T + +LPAG+
Sbjct: 819 ILKLTGYERLPAGQ 832



 Score = 61.2 bits (147), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 42/56 (75%), Gaps = 2/56 (3%)

Query: 357 TPHECRLRDLTYSAPITVDIEYTRGSQRVVR--SDLVIGRMPIMLQSSKCVLRNKT 410
           TPHECR R++TY+APIT+D+     ++  V+   ++ IG +PIML+S++C+L NK+
Sbjct: 99  TPHECRQRNMTYAAPITIDVRCKASNKSSVQYYKEICIGYIPIMLRSNRCILTNKS 154



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/49 (51%), Positives = 33/49 (67%)

Query: 478 KAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGSLLSLMFEDVFK 526
           KA+YLA MIRR +L        D +D+ GNK++E AG LL L+F+D FK
Sbjct: 417 KAVYLATMIRRAILFDFGVIKGDSKDFVGNKKIETAGDLLELIFDDAFK 465



 Score = 43.5 bits (101), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 17/58 (29%), Positives = 36/58 (62%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           D+W+L+ S+L  + + K H+DSF++ ++V I  +++ N+ +     P F+L+   + V
Sbjct: 20  DRWRLIHSYLMTESITKHHLDSFNHLLDVTIPAIIKENSLLVVAKHPQFHLRIEKVDV 77


>gi|429961383|gb|ELA40928.1| hypothetical protein VICG_02017 [Vittaforma corneae ATCC 50505]
          Length = 1108

 Score =  263 bits (672), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 130/261 (49%), Positives = 175/261 (67%), Gaps = 32/261 (12%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GLVP+PHHNQ+PRNTYQCAMGKQA+G I  N + R D+ +  L Y QRP+  SKT+ I  
Sbjct: 686  GLVPFPHHNQSPRNTYQCAMGKQAIGHIAANVKRRFDSAILQLNYTQRPIASSKTLDIIK 745

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            ++++P+G NA +AVMSYSGYDIEDA+I+N+ S+DRG  R  VY+ +  VLK+Y +   D+
Sbjct: 746  YNQIPSGFNAMVAVMSYSGYDIEDAVILNQGSVDRGMARVEVYKTNTIVLKKYSSGQSDK 805

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKE 1092
            ++G                   DG+++PG+ + +  VLVNK  P  +    S        
Sbjct: 806  LVG-------------------DGVISPGKYVVDGTVLVNKISPITNTLTSS-------- 838

Query: 1093 VPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQ 1152
                +KG  P+++EKV++ S SED  +IK++ R+TR PE+GDKFSSRHGQKGV+GLIV Q
Sbjct: 839  ---KHKGH-PAHIEKVMI-SKSEDESIIKVVTRETRSPEVGDKFSSRHGQKGVVGLIVPQ 893

Query: 1153 EDMPFNESGICPDIIMNPHGL 1173
             DMPFNE G+ PDIIMNPHG 
Sbjct: 894  VDMPFNEQGLAPDIIMNPHGF 914



 Score =  252 bits (644), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 114/177 (64%), Positives = 144/177 (81%), Gaps = 1/177 (0%)

Query: 1194 PSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESG 1253
            P+++EKV++S  SED  +IK++ R+TR PE+GDKFSSRHGQKGV+GLIV Q DMPFNE G
Sbjct: 844  PAHIEKVMISK-SEDESIIKVVTRETRSPEVGDKFSSRHGQKGVVGLIVPQVDMPFNEQG 902

Query: 1254 ICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYN 1313
            + PDIIMNPHG+PSRMTVGK+IELL+GKA ++EG Y + TAF   ++ D  + L + GY+
Sbjct: 903  LAPDIIMNPHGFPSRMTVGKIIELLSGKAAMIEGKYADATAFKKNQIRDFCDVLAKSGYS 962

Query: 1314 YQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRR 1370
            Y GKDIF SG TGE LEAYI+ GP++YQ+LKHMV DK+H R+RGPR +LTRQPT  R
Sbjct: 963  YSGKDIFTSGTTGEQLEAYIFYGPIFYQRLKHMVADKMHCRARGPRAILTRQPTEGR 1019



 Score =  182 bits (463), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 86/164 (52%), Positives = 119/164 (72%), Gaps = 3/164 (1%)

Query: 175 DKIIPK-IKAAQFDIVN--HMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSY 231
           DKI+ K  + ++FD +   +++  +IT++LT AI TGNW ++RF+MER GV+ +++R SY
Sbjct: 370 DKILSKRTRTSEFDALTFFNLQTSSITSSLTRAISTGNWNLKRFRMERSGVSSIITRYSY 429

Query: 232 ISGLGMMTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTE 291
           +  LGMMT+INS FEKTRKVSGPRSL  S WGMLCP DTPEGE+CGLVKNLAL+  ITT+
Sbjct: 430 VCALGMMTKINSHFEKTRKVSGPRSLHTSSWGMLCPVDTPEGESCGLVKNLALLAEITTD 489

Query: 292 NDEKNMLKIMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAGIT 335
           +D K + K++   G+  I +  G+E      +LVF+NG + GI 
Sbjct: 490 SDPKIIEKVLMEYGVRKIEICYGKEFYQKNNHLVFINGGIFGIV 533



 Score =  135 bits (339), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 67/136 (49%), Positives = 87/136 (63%), Gaps = 15/136 (11%)

Query: 687 LGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELL 746
           L +K F D + EGKIEYLD+NE N+  IA + S I    TTHLEI+ F +LG  AG    
Sbjct: 632 LRYKSFSDLINEGKIEYLDINEENNCMIAFTASEINEN-TTHLEISEFAILGYIAG---- 686

Query: 747 QYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMV 806
                     LVP+PHHNQ+PRNTYQCAMGKQA+G I  N + R D+ +  L Y QRP+ 
Sbjct: 687 ----------LVPFPHHNQSPRNTYQCAMGKQAIGHIAANVKRRFDSAILQLNYTQRPIA 736

Query: 807 ESKTIRITNFHKLPAG 822
            SKT+ I  ++++P+G
Sbjct: 737 SSKTLDIIKYNQIPSG 752



 Score = 70.9 bits (172), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 35/69 (50%), Positives = 47/69 (68%), Gaps = 1/69 (1%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQ 400
           V  P + E+   T Q  P ECR RDLTYSA I VD+EY R  Q V++ DL +G++PIML+
Sbjct: 63  VGAPSVTENMIET-QIYPLECRNRDLTYSANIYVDVEYVRNKQVVIKRDLCMGKLPIMLR 121

Query: 401 SSKCVLRNK 409
           S++C+L  K
Sbjct: 122 SNRCLLSAK 130



 Score = 70.1 bits (170), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 31/57 (54%), Positives = 44/57 (77%)

Query: 116 WKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           ++L+  FLKEK LV+ H++SF+YFI+ +I+ +M AN  + SD+D  FYLKYLDI VG
Sbjct: 8   YELIKLFLKEKTLVRQHLESFNYFIDYDIRSIMNANNIVDSDIDHTFYLKYLDIRVG 64



 Score = 69.7 bits (169), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 53/83 (63%), Gaps = 1/83 (1%)

Query: 453 VDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLEL 512
           +D+ R  LS   + +I   +   + K +Y+ +MIR++ +  +     DD+DY GNKR EL
Sbjct: 287 IDEVRTVLSERILPNIE-FDYTLRKKGVYVCLMIRKLAMNKAGIIGPDDKDYMGNKRFEL 345

Query: 513 AGSLLSLMFEDVFKRFNSELKET 535
           AG LL ++FED FK+FN ELK++
Sbjct: 346 AGQLLGILFEDSFKKFNYELKKS 368


>gi|118358942|ref|XP_001012712.1| DNA-directed RNA polymerase, beta subunit family protein [Tetrahymena
            thermophila]
 gi|89294479|gb|EAR92467.1| DNA-directed RNA polymerase, beta subunit family protein [Tetrahymena
            thermophila SB210]
          Length = 1141

 Score =  262 bits (670), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 132/274 (48%), Positives = 179/274 (65%), Gaps = 15/274 (5%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GLVPYPHHNQA RNT+QCAMGKQA+G IG    NR+DT++Y L+Y Q P++++K I    
Sbjct: 666  GLVPYPHHNQASRNTFQCAMGKQALGIIGSTSMNRVDTILYQLIYPQTPLLKTKVIEYAG 725

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + K PAG NA+IAV+SYSGYDIEDA ++NK+SLDRGFGR +V++  +  +++        
Sbjct: 726  YDKFPAGHNASIAVLSYSGYDIEDATVLNKSSLDRGFGRTMVFKKYETEIQKLKMSGLTE 785

Query: 1033 IL-GPLLEADTRKPVYRHR------ALDQDGIVAPGEQICERQVLVNKSMPTISVSAI-- 1083
            +L GP  EA+      ++R      ALD DG    G  I    VL NK  P +++     
Sbjct: 786  LLRGPPKEAEGSYKKKQNRVLKKFGALDDDGTPIVGASINNGDVLFNKYTPLLTLEQQRG 845

Query: 1084 -----SMATPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSS 1138
                 + +  EY   P ++KG   + +++V + S  +   +IK ++R+TRRPE GDKFSS
Sbjct: 846  RDILNNNSVSEYIHNPTTFKGKKLARIDRV-IRSQQDGNVIIKTIVRETRRPEYGDKFSS 904

Query: 1139 RHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHG 1172
            RHGQKG+IGLIV QEDMPF+E G  PD+IMNPHG
Sbjct: 905  RHGQKGIIGLIVNQEDMPFSEKGWVPDLIMNPHG 938



 Score =  244 bits (624), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 110/196 (56%), Positives = 149/196 (76%), Gaps = 1/196 (0%)

Query: 1177 DRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKG 1236
            + ++EY   P ++KG   + +++V + S  +   +IK ++R+TRRPE GDKFSSRHGQKG
Sbjct: 852  NSVSEYIHNPTTFKGKKLARIDRV-IRSQQDGNVIIKTIVRETRRPEYGDKFSSRHGQKG 910

Query: 1237 VIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFG 1296
            +IGLIV QEDMPF+E G  PD+IMNPHGYPSRMTVGKL+ELL  KA ++ G +K GTAFG
Sbjct: 911  IIGLIVNQEDMPFSEKGWVPDLIMNPHGYPSRMTVGKLLELLGSKAAVLSGQFKYGTAFG 970

Query: 1297 GTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSR 1356
            G K+ D+   L+++G++Y GKD+  SGITGE ++ Y++ GPV+YQ+LKHMV DK+HAR++
Sbjct: 971  GDKMADLSSILVQNGFSYTGKDVIISGITGEYMQCYVFCGPVFYQRLKHMVADKVHARAK 1030

Query: 1357 GPRVVLTRQPTGRRWK 1372
            G    LTRQPT  R K
Sbjct: 1031 GRVTTLTRQPTEGRAK 1046



 Score =  176 bits (446), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 93/211 (44%), Positives = 134/211 (63%), Gaps = 16/211 (7%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKI---IPKIKAAQFDIV 189
           ID  DY+ N  +K      A  Y  ++ LF  K+   ++ +  ++   I K K   + I 
Sbjct: 339 IDKRDYYGNKRMK-----CAGWY--LELLFEDKFKQFNMMVRKELSKEIEKHKNKSYPIK 391

Query: 190 NHMR------QDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           N +        D IT  L  AI TGNWTI+RF+M+  GVTQVL+R+SYI+ +GMMTR+NS
Sbjct: 392 NRVESILEKNHDIITQGLNNAISTGNWTIKRFRMDTVGVTQVLARISYIAAIGMMTRMNS 451

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
           QF+K+RK++GPRSL GS WG++CP+DTP+GE+CGL KNL+LM HIT E  +  +  I  N
Sbjct: 452 QFKKSRKLTGPRSLLGSHWGLVCPADTPDGESCGLTKNLSLMAHITIEEKKNVLSTIALN 511

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
           +G+E I  ++  E+     Y+VF+NG + G+
Sbjct: 512 LGMEDIGHYSSGEIHEDKNYMVFLNGQIIGM 542



 Score =  132 bits (332), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 64/134 (47%), Positives = 85/134 (63%), Gaps = 15/134 (11%)

Query: 690 KRFDDFLYEGKIEYLDVNEGNDSHIAVSESGI-RPGVTTHLEIAPFTLLGVCAGIELLQY 748
           K + D +  G IEY+DVNE ++ +IA+ +  I     TTH+EI P TLLGV +G      
Sbjct: 613 KSYLDLIRMGLIEYIDVNEEDNCYIAIKQEDIPNRSKTTHMEIDPLTLLGVVSG------ 666

Query: 749 NKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVES 808
                   LVPYPHHNQA RNT+QCAMGKQA+G IG    NR+DT++Y L+Y Q P++++
Sbjct: 667 --------LVPYPHHNQASRNTFQCAMGKQALGIIGSTSMNRVDTILYQLIYPQTPLLKT 718

Query: 809 KTIRITNFHKLPAG 822
           K I    + K PAG
Sbjct: 719 KVIEYAGYDKFPAG 732



 Score = 99.8 bits (247), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/107 (43%), Positives = 71/107 (66%), Gaps = 3/107 (2%)

Query: 426 MHSQRTSPLLSCKKLRQKRFQTYK---KTPVDDARDFLSSTCIAHIPVINMRFKMKAMYL 482
           +++Q+ +     K+LR K FQ  K   + PVD+ARD +++  + HIP  N  +  +A++L
Sbjct: 263 VYTQQQALEYLSKRLRPKTFQDKKYSSRNPVDEARDIITNVVLCHIPCKNYNYYPRAIFL 322

Query: 483 AVMIRRMVLALSDPDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFN 529
            +M RR++ AL DP  +D RDYYGNKR++ AG  L L+FED FK+FN
Sbjct: 323 GLMARRLIEALDDPSKIDKRDYYGNKRMKCAGWYLELLFEDKFKQFN 369



 Score = 48.5 bits (114), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 43/67 (64%), Gaps = 2/67 (2%)

Query: 107 KDSPEIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANAN--IYSDVDPLFYL 164
           K +  +R+K +++ S+L   G V  HI SF+YFIN+++++++ ++ N  +  D D  F L
Sbjct: 4   KTAEPLREKTRIIDSYLAHNGFVSHHIQSFNYFINIKLQQIITSSMNKELRLDTDNSFLL 63

Query: 165 KYLDIHV 171
           +Y  I++
Sbjct: 64  EYTKIYI 70


>gi|68076367|ref|XP_680103.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56500986|emb|CAH95536.1| hypothetical protein PB000108.01.0 [Plasmodium berghei]
          Length = 446

 Score =  262 bits (669), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 117/194 (60%), Positives = 153/194 (78%)

Query: 1179 ITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVI 1238
            + ++K   V YK   PSY++K++ + N E   + K+++RQ+R PE+GDKFSSRHGQKGV+
Sbjct: 163  LNDFKLSEVKYKSVYPSYVDKIIFTENGEGLKIYKIIMRQSRLPELGDKFSSRHGQKGVV 222

Query: 1239 GLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGT 1298
            GL+V QEDMPF ESGICPD+IMNPHG+PSRMTVGKL+EL++ K+ +++G YK G+ F GT
Sbjct: 223  GLLVNQEDMPFTESGICPDLIMNPHGFPSRMTVGKLLELVSSKSAVLDGEYKYGSIFSGT 282

Query: 1299 KLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGP 1358
               +  E L R+G+N+  K++ YSG+TGE LE YI+ GP+YYQKLKHMVQDKIHARSRGP
Sbjct: 283  PFEEAAEVLFRYGFNWSCKELLYSGLTGEPLETYIFMGPIYYQKLKHMVQDKIHARSRGP 342

Query: 1359 RVVLTRQPTGRRWK 1372
            R +LTRQPT  R K
Sbjct: 343  RQLLTRQPTEGRSK 356



 Score =  221 bits (562), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 117/249 (46%), Positives = 159/249 (63%), Gaps = 31/249 (12%)

Query: 956  VYAQRPMVESKTIRITNFHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVY 1015
            +Y Q+P+V+SKTI   NF KLPAGQNA ++VMS+ GYDIEDA++MNK+S+DRGFGRC+  
Sbjct: 1    IYPQKPLVKSKTIEFINFEKLPAGQNAIVSVMSFCGYDIEDAIVMNKSSIDRGFGRCMSL 60

Query: 1016 RNSKCVLKQYPNQTHDRIL-GPL----------------------LEADTRKPV----YR 1048
            R     LK+Y N ++D +L  PL                       + D +K +     +
Sbjct: 61   RKHFIELKKYFNGSNDIVLPSPLSISKQQQMQKKYGKESNDNLANAKEDPKKTINSELKK 120

Query: 1049 HRALDQDGIVAPGEQICERQVLVNKSMPT---ISVSAIS-MATPEYKEVPVSYKGSVPSY 1104
            + +LD DG+V+ G  + E QV VNK  P      V  IS +   ++K   V YK   PSY
Sbjct: 121  YHSLDADGVVSIGYLLKEGQVYVNKYSPINVKDHVKDISKLDLNDFKLSEVKYKSVYPSY 180

Query: 1105 LEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICP 1164
            ++K++ + N E   + K+++RQ+R PE+GDKFSSRHGQKGV+GL+V QEDMPF ESGICP
Sbjct: 181  VDKIIFTENGEGLKIYKIIMRQSRLPELGDKFSSRHGQKGVVGLLVNQEDMPFTESGICP 240

Query: 1165 DIIMNPHGL 1173
            D+IMNPHG 
Sbjct: 241  DLIMNPHGF 249


>gi|294942350|ref|XP_002783487.1| DNA-directed RNA polymerase, beta subunit, putative [Perkinsus
            marinus ATCC 50983]
 gi|239895970|gb|EER15283.1| DNA-directed RNA polymerase, beta subunit, putative [Perkinsus
            marinus ATCC 50983]
          Length = 255

 Score =  262 bits (669), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 119/195 (61%), Positives = 152/195 (77%)

Query: 1178 RITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV 1237
            +++ +++ P+SYK  VPSY+++V+ + N + A + K + RQTRRPE+GDKFSSRHGQKGV
Sbjct: 8    QVSHWRDTPISYKNPVPSYVDRVIATENEDQAKIFKCITRQTRRPELGDKFSSRHGQKGV 67

Query: 1238 IGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGG 1297
            +GLIV QEDMPF E G CPD+IMNPHG+PSRMTVGKL+E ++GKAG+++G    GTAFGG
Sbjct: 68   VGLIVNQEDMPFGEKGWCPDLIMNPHGFPSRMTVGKLLECVSGKAGVLDGERSYGTAFGG 127

Query: 1298 TKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRG 1357
            T    + + LIRHG++   K+   SG+TGEALE YI+ GP+YYQKLKHMV DKIHARS G
Sbjct: 128  TTKEHMTQSLIRHGFHPSAKEYITSGVTGEALECYIFVGPIYYQKLKHMVMDKIHARSTG 187

Query: 1358 PRVVLTRQPTGRRWK 1372
            P   LTRQPT  R K
Sbjct: 188  PVNQLTRQPTEGRAK 202



 Score =  128 bits (321), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 54/92 (58%), Positives = 70/92 (76%)

Query: 1082 AISMATPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1141
            A +     +++ P+SYK  VPSY+++V+ + N + A + K + RQTRRPE+GDKFSSRHG
Sbjct: 4    AATGQVSHWRDTPISYKNPVPSYVDRVIATENEDQAKIFKCITRQTRRPELGDKFSSRHG 63

Query: 1142 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            QKGV+GLIV QEDMPF E G CPD+IMNPHG 
Sbjct: 64   QKGVVGLIVNQEDMPFGEKGWCPDLIMNPHGF 95


>gi|291336400|gb|ADD95957.1| DNA directed RNA polymerase beta subunit putative [uncultured
            organism MedDCM-OCT-S04-C1]
          Length = 1203

 Score =  260 bits (665), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 160/462 (34%), Positives = 230/462 (49%), Gaps = 91/462 (19%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            L+PYP HN  PR T   AM KQ++G    N + R DT ++ L Y QR +  ++ +  T F
Sbjct: 733  LIPYPEHNSTPRVTGGTAMVKQSLGLPSANYRLRPDTRLHILHYPQRSITYTQAMDTTKF 792

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
               P GQN  +AVMS  GY+++DA+I+N++ + R  GR    R      +++P    D I
Sbjct: 793  DSRPGGQNFIVAVMSLHGYNMQDAVIINRSCVQRALGRSTFNRTYNAERRRFPGGQVDEI 852

Query: 1034 LGP---LLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEY 1090
              P   L E    KPV  +  L+ DG+  P + +    VLV                   
Sbjct: 853  EIPGTGLEEVKGLKPVGSYDHLEGDGLPHPEKYLEGGDVLVG------------------ 894

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
                   K S P +LE+         AFL     R++  P        RHG+KG      
Sbjct: 895  -------KTSPPRFLEET-----GAGAFLQAQERRESSMP-------IRHGEKG------ 929

Query: 1151 EQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAF 1210
                                                         +++ V V+ + +   
Sbjct: 930  ---------------------------------------------WVDNVYVTESLDSGR 944

Query: 1211 LIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMT 1270
            L++ ++R  + PE+GDKF+SRHGQKGVIG +V +EDMPF   GI PD+I+NPH  PSRMT
Sbjct: 945  LVRCMVRSHKVPEVGDKFASRHGQKGVIGRLVNEEDMPFTRDGIVPDLIINPHAIPSRMT 1004

Query: 1271 VGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALE 1330
            V  ++E++ GK G +EG   +GTAF G K   +++ L+R+GY++ G+++  +G TGE   
Sbjct: 1005 VAHVLEMIGGKVGSLEGRRIDGTAFRGEKEGSLRDSLVRNGYDHTGREVMMNGETGETYP 1064

Query: 1331 AYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
            A I+ G +YYQKL HMV  KIHARSRG   +LTRQPT  R +
Sbjct: 1065 AEIFVGCIYYQKLHHMVSGKIHARSRGRVQILTRQPTEGRAR 1106



 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/108 (38%), Positives = 63/108 (58%), Gaps = 5/108 (4%)

Query: 182 KAAQFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRI 241
           +  +  I + +R D +T+ +  A+ TGNW        R GV+Q+L R +Y+S L  M R+
Sbjct: 413 RKRELKITSCLRPDVLTSKIMHALATGNWV-----GGRSGVSQLLDRTTYLSALSHMRRV 467

Query: 242 NSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHIT 289
            S   +++     R L  +QWG LCP++TPEG+ CGLVKN A M  I+
Sbjct: 468 TSPLVRSQPHFEARDLHPTQWGRLCPNETPEGQNCGLVKNAAQMIDIS 515



 Score = 63.5 bits (153), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 48/97 (49%), Gaps = 14/97 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LGVCA               L+PYP HN  PR T   AM KQ++G    N
Sbjct: 717 THCEIDPQLVLGVCAS--------------LIPYPEHNSTPRVTGGTAMVKQSLGLPSAN 762

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
            + R DT ++ L Y QR +  ++ +  T F   P G+
Sbjct: 763 YRLRPDTRLHILHYPQRSITYTQAMDTTKFDSRPGGQ 799



 Score = 48.9 bits (115), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 57/121 (47%), Gaps = 8/121 (6%)

Query: 289 TTENDEKNMLKIMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAGITCHHK--EVCKPEI 346
           T +N    M KI     +  I +   EE+      LV ++ I   I    K  ++ +P I
Sbjct: 28  TGDNSVSRMEKI-----VRSIRVGTDEEVEDENGGLVKLDVIDQDIIIRVKNIQLGEPTI 82

Query: 347 EESFNYTRQTTPHECRLRDLTYSAPITVDIE-YTRGSQRVVRSDLVIGRMPIMLQSSKCV 405
            E+      ++P ECRLR LTY +P+ +D   Y  G        + +G MPIM++S +C 
Sbjct: 83  READGSDHPSSPMECRLRKLTYMSPVRMDFTIYRNGVPGQPEKGVQVGNMPIMVRSRRCN 142

Query: 406 L 406
           L
Sbjct: 143 L 143


>gi|302412759|ref|XP_003004212.1| DNA-directed RNA polymerase III subunit RPC2 [Verticillium albo-atrum
            VaMs.102]
 gi|261356788|gb|EEY19216.1| DNA-directed RNA polymerase III subunit RPC2 [Verticillium albo-atrum
            VaMs.102]
          Length = 1105

 Score =  259 bits (661), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 118/199 (59%), Positives = 160/199 (80%), Gaps = 3/199 (1%)

Query: 1175 GCDR-ITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
            G DR  +E+++  +SY+   P+Y++KV++S + +D  +IK+  RQTRRPE+GDKFSSRHG
Sbjct: 809  GNDRGPSEFRDSSISYRIPDPAYIDKVMISQSEKDNMVIKVQTRQTRRPELGDKFSSRHG 868

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEG--NYKE 1291
            QKGV+G+IVEQED+PF++ G+ PDIIMNPHG+PSRMTVGKL+E L GKA +++G  +Y  
Sbjct: 869  QKGVVGIIVEQEDLPFSDKGLVPDIIMNPHGFPSRMTVGKLLECLTGKASVLDGRPDYGF 928

Query: 1292 GTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKI 1351
            G AF    L  + E L+ HG++++GKD F SGITGE LEAYI++GP+YYQ+LKHMVQDK+
Sbjct: 929  GDAFRSHPLKQMSEALVDHGFSWEGKDYFTSGITGEPLEAYIFNGPIYYQRLKHMVQDKM 988

Query: 1352 HARSRGPRVVLTRQPTGRR 1370
            H+R+RGPR +LTRQPT  R
Sbjct: 989  HSRARGPRAILTRQPTEGR 1007



 Score =  245 bits (625), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 128/261 (49%), Positives = 165/261 (63%), Gaps = 49/261 (18%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+P+PHHNQ+PRNTYQCAMGKQA+G I YNQ NRIDTL+Y LVY QRPMV SKTI++ +
Sbjct: 689  GLIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLYTLVYPQRPMVISKTIQLIH 748

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KLPAGQNAT+ VMSYSGYDIEDAL+                     +L  +P      
Sbjct: 749  YDKLPAGQNATVVVMSYSGYDIEDALL--------------------WILMAWPWSVARS 788

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKE 1092
             LG  +       V +   LD  G    G          N   P+           E+++
Sbjct: 789  GLGEAM-------VKKETPLDT-GSTGIG----------NDRGPS-----------EFRD 819

Query: 1093 VPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQ 1152
              +SY+   P+Y++KV++S + +D  +IK+  RQTRRPE+GDKFSSRHGQKGV+G+IVEQ
Sbjct: 820  SSISYRIPDPAYIDKVMISQSEKDNMVIKVQTRQTRRPELGDKFSSRHGQKGVVGIIVEQ 879

Query: 1153 EDMPFNESGICPDIIMNPHGL 1173
            ED+PF++ G+ PDIIMNPHG 
Sbjct: 880  EDLPFSDKGLVPDIIMNPHGF 900



 Score =  190 bits (482), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 104/208 (50%), Positives = 136/208 (65%), Gaps = 9/208 (4%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKI-KAAQFDIVNH 191
           +D  D+  N  ++   Q  + ++ D   LF     D+   I DK++ K  +A   D V  
Sbjct: 365 VDDRDFVGNKRLELAGQLLSLLFED---LFKKFCGDVKASI-DKVLKKDNRAVAMDAVTM 420

Query: 192 MRQ--DTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
           +    + I   +  AIQTGNWT++RF M R GVT VLSRLSYIS LGMMTRI+SQFEKTR
Sbjct: 421 ISNHANNIGQGINRAIQTGNWTVKRFNMNRAGVTHVLSRLSYISALGMMTRISSQFEKTR 480

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNI--GIE 307
           KVSGPR+LQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT  +E+ + + ++ +   +E
Sbjct: 481 KVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTNAEEEPVKRWVFTVDDNVE 540

Query: 308 HIAMFNGEELSSPGVYLVFVNGILAGIT 335
            I  F+G E+   G Y++ +NG    +T
Sbjct: 541 PIRNFSGSEMHREGSYIIHINGTPFALT 568



 Score =  165 bits (417), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 80/137 (58%), Positives = 98/137 (71%), Gaps = 15/137 (10%)

Query: 687 LGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELL 746
           LG   FDDFL  G +EYLDVNE ND+ +A+ E+ +    TTH+EI PFT+LG  AG    
Sbjct: 635 LGKATFDDFLTNGVVEYLDVNEENDTLVALYETDVNQS-TTHMEIEPFTILGAVAG---- 689

Query: 747 QYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMV 806
                     L+P+PHHNQ+PRNTYQCAMGKQA+G I YNQ NRIDTL+Y LVY QRPMV
Sbjct: 690 ----------LIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLYTLVYPQRPMV 739

Query: 807 ESKTIRITNFHKLPAGK 823
            SKTI++ ++ KLPAG+
Sbjct: 740 ISKTIQLIHYDKLPAGQ 756



 Score = 97.1 bits (240), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 54/133 (40%), Positives = 83/133 (62%), Gaps = 4/133 (3%)

Query: 407 RNKTEYTSSSRRASTSSVTMHSQRTSPLLSCKKLRQK-RFQ---TYKKTPVDDARDFLSS 462
           R + E+T +   A+   V    Q    + S  K+  + RFQ     +K  +++  D LS+
Sbjct: 269 RYQDEFTVNFDEATKQGVYTQQQALEWIGSRVKMGGRGRFQPNSQARKNNIEEGMDALSN 328

Query: 463 TCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGSLLSLMFE 522
             IAHIPV  + F  KA+Y+A M RR+++A ++  ++DDRD+ GNKRLELAG LLSL+FE
Sbjct: 329 LIIAHIPVEGLDFYPKAIYVAFMTRRVLMAQANMSLVDDRDFVGNKRLELAGQLLSLLFE 388

Query: 523 DVFKRFNSELKET 535
           D+FK+F  ++K +
Sbjct: 389 DLFKKFCGDVKAS 401



 Score = 71.2 bits (173), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 32/61 (52%), Positives = 43/61 (70%), Gaps = 3/61 (4%)

Query: 349 SFNYTR---QTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCV 405
            FN  R   + TP ECRLRD+TY API VDI Y R   ++VR ++ +GR+P+ML+S+KC 
Sbjct: 94  DFNDARAHSEVTPMECRLRDMTYGAPIFVDIAYIRDKSKIVRRNVPLGRLPVMLKSAKCR 153

Query: 406 L 406
           L
Sbjct: 154 L 154



 Score = 67.0 bits (162), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 30/58 (51%), Positives = 46/58 (79%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           DK++L+ +FLK KGLVK HIDS+++F++ EIK +++AN  I SDV+  F+L++ DI V
Sbjct: 30  DKFQLLPAFLKVKGLVKQHIDSYNFFVDHEIKDIVRANRTIRSDVNSSFWLEFTDIRV 87


>gi|67582937|ref|XP_664954.1| DNA-directed RNA polymerase, beta subunit [Cryptosporidium hominis
            TU502]
 gi|54655176|gb|EAL34724.1| DNA-directed RNA polymerase, beta subunit [Cryptosporidium hominis]
          Length = 344

 Score =  256 bits (655), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 120/251 (47%), Positives = 176/251 (70%), Gaps = 9/251 (3%)

Query: 932  MGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGQNATIAVMSYSG 991
            MGKQ MG +G+NQ  R D+++Y LVY Q+P+ +++TI + NF +LPAGQN+++AVMS++G
Sbjct: 1    MGKQVMGSVGFNQFLRCDSVLYLLVYPQKPLCKTRTIEMINFEQLPAGQNSSVAVMSFAG 60

Query: 992  YDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRILGPLLEA----DTRKPVY 1047
            YDIEDA++MNKAS+DRGF RC V +     L++ PN   +R++ P+  A      R+  +
Sbjct: 61   YDIEDAIVMNKASVDRGFARCFVMKRQTIELQKLPNGLSERVVRPISGALGNTGNRRFSF 120

Query: 1048 RHRA-LDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT----PEYKEVPVSYKGSVP 1102
            ++   LD DG+   G Q+ E  ++VNK  P  +   +   +     EYK  PV YKG   
Sbjct: 121  KNDGILDNDGVCNVGVQVSEDDIIVNKMSPINTREYVGDPSQFDLSEYKPSPVKYKGPTS 180

Query: 1103 SYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGI 1162
            SY+++V+++ N++   + K++ RQTRRPE+GDKFSSRHGQKGV+GLI+ QED+PF+E+G 
Sbjct: 181  SYIDRVILTENADGNQIYKVITRQTRRPELGDKFSSRHGQKGVVGLIISQEDLPFSETGW 240

Query: 1163 CPDIIMNPHGL 1173
            CPD+IMNPHG 
Sbjct: 241  CPDLIMNPHGF 251



 Score =  249 bits (636), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 109/179 (60%), Positives = 148/179 (82%)

Query: 1179 ITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVI 1238
            ++EYK  PV YKG   SY+++V+++ N++   + K++ RQTRRPE+GDKFSSRHGQKGV+
Sbjct: 165  LSEYKPSPVKYKGPTSSYIDRVILTENADGNQIYKVITRQTRRPELGDKFSSRHGQKGVV 224

Query: 1239 GLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGT 1298
            GLI+ QED+PF+E+G CPD+IMNPHG+PSRMTVGKL+EL++ KA +++GNY+ GTAFGGT
Sbjct: 225  GLIISQEDLPFSETGWCPDLIMNPHGFPSRMTVGKLLELISSKASVLDGNYRYGTAFGGT 284

Query: 1299 KLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRG 1357
             L +  + L+ HG++Y GK+   SG TGEA+EAYI+ GP+YYQKLKHMV DK+HAR +G
Sbjct: 285  PLEESAKCLVEHGFHYSGKEYLTSGTTGEAIEAYIFVGPIYYQKLKHMVLDKMHARRKG 343



 Score = 61.6 bits (148), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/49 (51%), Positives = 38/49 (77%)

Query: 775 MGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
           MGKQ MG +G+NQ  R D+++Y LVY Q+P+ +++TI + NF +LPAG+
Sbjct: 1   MGKQVMGSVGFNQFLRCDSVLYLLVYPQKPLCKTRTIEMINFEQLPAGQ 49


>gi|156101694|ref|XP_001616540.1| DNA-directed RNA polymerase III subunit [Plasmodium vivax Sal-1]
 gi|148805414|gb|EDL46813.1| DNA-directed RNA polymerase III subunit, putative [Plasmodium vivax]
          Length = 1427

 Score =  256 bits (654), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 115/194 (59%), Positives = 152/194 (78%)

Query: 1179 ITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVI 1238
            + + K   V YK   PSY++K++ + N+E   + K+++RQTR PE+GDKFSSRHGQKGV+
Sbjct: 1144 LNDLKSNEVKYKSVYPSYVDKIIFTENAEGLKIYKIIMRQTRLPELGDKFSSRHGQKGVV 1203

Query: 1239 GLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGT 1298
            GL+V QEDMPF ESGICPD+IMNPHG+PSRMTVGKL+EL+A K+ +++G +K G+ F GT
Sbjct: 1204 GLLVNQEDMPFTESGICPDLIMNPHGFPSRMTVGKLLELVASKSAVLDGEFKYGSIFSGT 1263

Query: 1299 KLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGP 1358
               ++   L ++G+N   K++ YSG+TGE LE YI+ GP+YYQKLKHMVQDKIHAR+RGP
Sbjct: 1264 PFEEMASILFKYGFNCSCKELLYSGLTGEPLETYIFMGPIYYQKLKHMVQDKIHARARGP 1323

Query: 1359 RVVLTRQPTGRRWK 1372
            R +LTRQPT  R K
Sbjct: 1324 RQLLTRQPTEGRSK 1337



 Score =  201 bits (510), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 105/229 (45%), Positives = 145/229 (63%), Gaps = 18/229 (7%)

Query: 130 KPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYL-----------KYLDIHVGIADKII 178
           K  +D  DY+ N  ++   Q  + ++ D+   FY            KY+  +     K  
Sbjct: 554 KNELDDKDYYGNKRLELAGQLISLLFEDLYKRFYFTLKKQIDQTLSKYMQSNYTSKLKYS 613

Query: 179 PKIKAAQFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMM 238
             +     D+   + +D IT  + AAI TGNW I+RFKME+ GV+QVLSRLS+I+ +GMM
Sbjct: 614 GNVNDTYPDVFRSLPKDIITRGMQAAISTGNWNIKRFKMEKSGVSQVLSRLSFIACIGMM 673

Query: 239 TRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTEND-EKNM 297
           TR+NSQFEK RKVSGPR+LQ SQWG+LCP DTPEGE+CGLVKNLALMTH+T +N+  +++
Sbjct: 674 TRLNSQFEKGRKVSGPRALQPSQWGVLCPCDTPEGESCGLVKNLALMTHVTNDNENNEHL 733

Query: 298 LKIMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAGITCHHKEVCKPEI 346
           ++I+Y +G+E      GEE+   G++ V  NGIL G+   HK   KP I
Sbjct: 734 IEILYTLGVEDSDSLTGEEMYKQGIFFVIFNGILLGV---HK---KPRI 776



 Score =  182 bits (461), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 81/122 (66%), Positives = 100/122 (81%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+PYP+HNQ+PRNTYQCAMGKQA+G IGYNQ  R DTL+Y LVY Q+P+V+SKTI   N
Sbjct: 892  GLIPYPNHNQSPRNTYQCAMGKQAIGAIGYNQFVRCDTLLYLLVYPQKPLVKSKTIEFIN 951

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNA +AVMS+ GYDIEDA++MNK+S+DRGFGRC+  R     LK+Y N ++D 
Sbjct: 952  FEKLPAGQNAIVAVMSFCGYDIEDAIVMNKSSIDRGFGRCMSLRKHAVELKKYFNGSNDL 1011

Query: 1033 IL 1034
            +L
Sbjct: 1012 VL 1013



 Score =  148 bits (374), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 78/139 (56%), Positives = 93/139 (66%), Gaps = 15/139 (10%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G   F D L    IE++DVNE N+  IA++ES I    TTHLEI P T+LGV AG     
Sbjct: 839 GIINFFDLLKSSVIEWIDVNEQNNLLIALNESDISVN-TTHLEIDPLTILGVVAG----- 892

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYP+HNQ+PRNTYQCAMGKQA+G IGYNQ  R DTL+Y LVY Q+P+V+
Sbjct: 893 ---------LIPYPNHNQSPRNTYQCAMGKQAIGAIGYNQFVRCDTLLYLLVYPQKPLVK 943

Query: 808 SKTIRITNFHKLPAGKCQI 826
           SKTI   NF KLPAG+  I
Sbjct: 944 SKTIEFINFEKLPAGQNAI 962



 Score =  137 bits (346), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 68/136 (50%), Positives = 92/136 (67%), Gaps = 8/136 (5%)

Query: 1044 KPVYRHRALDQDGIVAPGEQICERQVLVNKSMP------TISVSAISMATPEYKEVPVSY 1097
            K + ++ ALD DG+V+ G  + E QV +NK  P         +S I +   + K   V Y
Sbjct: 1097 KEIKKYHALDVDGVVSIGYLLREGQVYINKYSPKNVKDHVKDISKIDLN--DLKSNEVKY 1154

Query: 1098 KGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPF 1157
            K   PSY++K++ + N+E   + K+++RQTR PE+GDKFSSRHGQKGV+GL+V QEDMPF
Sbjct: 1155 KSVYPSYVDKIIFTENAEGLKIYKIIMRQTRLPELGDKFSSRHGQKGVVGLLVNQEDMPF 1214

Query: 1158 NESGICPDIIMNPHGL 1173
             ESGICPD+IMNPHG 
Sbjct: 1215 TESGICPDLIMNPHGF 1230



 Score = 82.4 bits (202), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 42/96 (43%), Positives = 67/96 (69%), Gaps = 2/96 (2%)

Query: 440 LRQKRFQTYKKTPVDDARDFLSSTCIAHIPVIN-MRFKMKAMYLAVMIRRMVLALSDPDM 498
           +++K+ +  +K  +++  DFLS   ++HI   N   F+ KA  + +MIRR++   ++ + 
Sbjct: 498 MKEKQVKN-EKDIIEEGLDFLSRVLLSHIQQKNKYDFRNKARCICLMIRRVLDGANNKNE 556

Query: 499 LDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELKE 534
           LDD+DYYGNKRLELAG L+SL+FED++KRF   LK+
Sbjct: 557 LDDKDYYGNKRLELAGQLISLLFEDLYKRFYFTLKK 592



 Score = 78.6 bits (192), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/71 (52%), Positives = 51/71 (71%), Gaps = 1/71 (1%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQ 400
           V KP +EE+   T   TP  CR RDLTYSAPI VD+EY +GS  + ++++ IGR+P+ML+
Sbjct: 277 VGKPSVEENMIET-NLTPQICRQRDLTYSAPIYVDVEYVKGSNIIRKNNVEIGRLPVMLR 335

Query: 401 SSKCVLRNKTE 411
           S  C+L NK+E
Sbjct: 336 SDICILNNKSE 346



 Score = 73.6 bits (179), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 35/68 (51%), Positives = 49/68 (72%), Gaps = 2/68 (2%)

Query: 107 KDSPEIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANAN--IYSDVDPLFYL 164
           KD   + +KWKL+ ++LK KGLVK HI+S++YFI  EIK +M A  N  + SD+D  FY+
Sbjct: 211 KDIKNVTEKWKLLPAYLKVKGLVKQHIESYNYFIKQEIKTIMNATTNKILKSDIDEHFYV 270

Query: 165 KYLDIHVG 172
           ++LDI VG
Sbjct: 271 EFLDIFVG 278


>gi|26333219|dbj|BAC30327.1| unnamed protein product [Mus musculus]
          Length = 551

 Score =  254 bits (648), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 122/202 (60%), Positives = 156/202 (77%), Gaps = 4/202 (1%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVNHM 192
           +D  DY+ N  ++   Q  + ++ D+    + K+      IAD++IPK +AAQFD+V HM
Sbjct: 351 VDDRDYYGNKRLELAGQLLSLLFEDL----FKKFNSEMKKIADQVIPKQRAAQFDVVKHM 406

Query: 193 RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVS 252
           RQD ITN +  AI TGNW+++RFKM+RQGVTQVLSRLSYIS LGMMTRI+SQFEKTRK S
Sbjct: 407 RQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKES 466

Query: 253 GPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMF 312
           GPRSLQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT+ ++  ++K+  N+G+E + + 
Sbjct: 467 GPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKLAGNLGVEDVNLL 526

Query: 313 NGEELSSPGVYLVFVNGILAGI 334
            GEELS P V+LVF+NG + G+
Sbjct: 527 CGEELSYPNVFLVFLNGNILGV 548



 Score =  116 bits (290), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 63/111 (56%), Positives = 79/111 (71%), Gaps = 14/111 (12%)

Query: 303 NIGIEHIAMFNGEELSS---PGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPH 359
           N+ I+ I   N E+++S   P  YL ++N I  G+         P++EESFN TR  +PH
Sbjct: 52  NVEIKKIMKAN-EKVTSDADPMWYLKYLN-IYVGL---------PDVEESFNVTRPVSPH 100

Query: 360 ECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
           ECRLRD+TYSAPITVDIEYTRGSQR++R+ L IGRMPIML+SS CVL  KT
Sbjct: 101 ECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKT 151



 Score =  113 bits (283), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 70/86 (81%), Gaps = 1/86 (1%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           KKT +++AR+ L+ST + H+PV    F+ K +Y AVM+RR++LA  D + +DDRDYYGNK
Sbjct: 302 KKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQGD-NKVDDRDYYGNK 360

Query: 509 RLELAGSLLSLMFEDVFKRFNSELKE 534
           RLELAG LLSL+FED+FK+FNSE+K+
Sbjct: 361 RLELAGQLLSLLFEDLFKKFNSEMKK 386



 Score = 99.0 bits (245), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 42/66 (63%), Positives = 56/66 (84%)

Query: 110 PEIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDI 169
           P + +KW+L+ +FLK KGLVK HIDSF+YFINVEIKK+M+AN  + SD DP++YLKYL+I
Sbjct: 21  PTVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMWYLKYLNI 80

Query: 170 HVGIAD 175
           +VG+ D
Sbjct: 81  YVGLPD 86


>gi|85001437|ref|XP_955436.1| DNA-directed RNA polymerase iii [Theileria annulata strain Ankara]
 gi|65303582|emb|CAI75960.1| DNA-directed RNA polymerase iii, putative [Theileria annulata]
          Length = 1244

 Score =  251 bits (642), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 130/273 (47%), Positives = 176/273 (64%), Gaps = 19/273 (6%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+P+P+HNQ+PRNTYQCAMGKQ++G IGYNQ  R DT+++ + Y Q+P+V +KTI++ N
Sbjct: 768  GLIPFPNHNQSPRNTYQCAMGKQSIGSIGYNQLQRCDTVVHLMNYTQQPLVTTKTIQLVN 827

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNA +AVMSY GY+IEDA+I+NKAS+DRGF RC   R   C +    N T   
Sbjct: 828  FDKLPAGQNAIVAVMSYQGYEIEDAIILNKASIDRGFARCYTLRRLTCEITP-GNATSIN 886

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVN-KSMPTISVSAISM------ 1085
               P       K   +      + ++  GE +   QVL++ K+ PT   +  SM      
Sbjct: 887  GYNP------NKSQNKDSDSTNEYVIGVGEPVKPGQVLISTKAPPTDFTTNGSMNGKNGE 940

Query: 1086 -----ATPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRH 1140
                  T E K +   Y  +   Y+++++++ N     + K+++RQ+R PEIGDKFSSRH
Sbjct: 941  SNQSSGTNEDKYIVNKYDLNTGGYIDRLILTENFNGNTMYKIMVRQSRPPEIGDKFSSRH 1000

Query: 1141 GQKGVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            GQKGV+GLI E EDMPF ESGI PD+IMNPHG 
Sbjct: 1001 GQKGVVGLIAEHEDMPFTESGIVPDLIMNPHGF 1033



 Score =  216 bits (551), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 102/208 (49%), Positives = 141/208 (67%), Gaps = 15/208 (7%)

Query: 1180 TEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1239
             E K +   Y  +   Y+++++++ N     + K+++RQ+R PEIGDKFSSRHGQKGV+G
Sbjct: 948  NEDKYIVNKYDLNTGGYIDRLILTENFNGNTMYKIMVRQSRPPEIGDKFSSRHGQKGVVG 1007

Query: 1240 LIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGT- 1298
            LI E EDMPF ESGI PD+IMNPHG+PSRMTVGKL+EL+A K+ +  GN+ + T F  + 
Sbjct: 1008 LIAEHEDMPFTESGIVPDLIMNPHGFPSRMTVGKLLELVASKSSVFSGNFVDSTPFSNSY 1067

Query: 1299 --------------KLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLK 1344
                           + D+   LI++G++ +GK+I YSGI+G  +   I+ GP+YYQ+LK
Sbjct: 1068 SDNLCNDLNNTKTDNMSDICNILIKNGFHPKGKEILYSGISGNPINTLIFIGPIYYQRLK 1127

Query: 1345 HMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
            HMV DKIHAR RGPR  +TRQPT  R +
Sbjct: 1128 HMVTDKIHARGRGPRQPITRQPTEGRSR 1155



 Score =  172 bits (436), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 99/229 (43%), Positives = 140/229 (61%), Gaps = 28/229 (12%)

Query: 129 VKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKI------- 181
           V+P +D  D++ N  ++   Q  + ++ D    FY K+L+      + II K        
Sbjct: 423 VEP-LDDKDHYGNKRLELAGQMISILFED----FYKKFLNNMKKSIESIIVKYLESNPNP 477

Query: 182 ---KAAQF-DIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGM 237
              + + F DI   M  D ITN +  AI TGNW I+RF+ME+ GV+QVLSRLSYIS +GM
Sbjct: 478 TKGENSNFPDIFGLMPTDIITNGMQNAIATGNWNIKRFRMEKTGVSQVLSRLSYISSIGM 537

Query: 238 MTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNM 297
           MT+ +SQFEK RKVSGPR+LQ SQ+G+LCP DTPEGE+CGLVKNL+LMTH+T++     +
Sbjct: 538 MTKTDSQFEKGRKVSGPRALQPSQFGILCPCDTPEGESCGLVKNLSLMTHVTSDVPTPVL 597

Query: 298 LKIMYNIGIEHIAMFNGEELSSP------------GVYLVFVNGILAGI 334
             +++ +G+E I   +  ++ +P               LV +NGIL GI
Sbjct: 598 ETLLFTLGVEPIDTLSSHDMFNPWKGTSGKSDNRRNSRLVLLNGILLGI 646



 Score =  132 bits (333), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 66/134 (49%), Positives = 93/134 (69%), Gaps = 16/134 (11%)

Query: 694 DFLYE-GKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRF 752
           D+L+  G +E++DVNE N+  I + E  I   +TTHLEI+P ++LGV AG          
Sbjct: 720 DYLFNNGILEWIDVNEENNLLIVMRERDIT-NLTTHLEISPMSILGVVAG---------- 768

Query: 753 HSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIR 812
               L+P+P+HNQ+PRNTYQCAMGKQ++G IGYNQ  R DT+++ + Y Q+P+V +KTI+
Sbjct: 769 ----LIPFPNHNQSPRNTYQCAMGKQSIGSIGYNQLQRCDTVVHLMNYTQQPLVTTKTIQ 824

Query: 813 ITNFHKLPAGKCQI 826
           + NF KLPAG+  I
Sbjct: 825 LVNFDKLPAGQNAI 838



 Score = 76.6 bits (187), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 67/101 (66%), Gaps = 1/101 (0%)

Query: 442 QKRFQTYKKTPVDDARDFLSSTCIAHIPVINMR-FKMKAMYLAVMIRRMVLALSDPDMLD 500
           + R    K+  ++D  D LS   ++HIP+ + R F  K   L++M  R++  +++ + LD
Sbjct: 368 KDRAPKSKQMIIEDTHDILSRVLLSHIPMRDCRDFSGKIKTLSLMAHRVLNVVNNVEPLD 427

Query: 501 DRDYYGNKRLELAGSLLSLMFEDVFKRFNSELKETNLSGVV 541
           D+D+YGNKRLELAG ++S++FED +K+F + +K++  S +V
Sbjct: 428 DKDHYGNKRLELAGQMISILFEDFYKKFLNNMKKSIESIIV 468



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 40/67 (59%)

Query: 340 EVCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIML 399
           ++ KP   +   +  + TP  CR+RD TYSAPI V I+Y R      + +L IGR+P+ML
Sbjct: 91  KIGKPFFTDHSKHVFKLTPQLCRIRDFTYSAPILVTIDYFRDYTFTRKENLEIGRIPVML 150

Query: 400 QSSKCVL 406
           +S  C L
Sbjct: 151 RSCICFL 157



 Score = 49.3 bits (116), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 44/64 (68%), Gaps = 2/64 (3%)

Query: 111 EIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANAN--IYSDVDPLFYLKYLD 168
           EI+DKWK++  ++  +G+ + HI+S++ F+  EIK ++ A +N  + +++ P   L+++D
Sbjct: 30  EIKDKWKILPCYMGMRGIARQHINSYNNFVLHEIKDIINAPSNKVLRTELYPSLSLEFVD 89

Query: 169 IHVG 172
           I +G
Sbjct: 90  IKIG 93


>gi|71026390|ref|XP_762870.1| DNA-directed RNA polymerase III subunit [Theileria parva strain
            Muguga]
 gi|68349822|gb|EAN30587.1| DNA-directed RNA polymerase III subunit, putative [Theileria parva]
          Length = 1244

 Score =  251 bits (641), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 129/272 (47%), Positives = 176/272 (64%), Gaps = 18/272 (6%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+P+P+HNQ+PRNTYQCAMGKQ++G IGYNQ  R DT+++ + Y Q+P+V +KTI++ N
Sbjct: 769  GLIPFPNHNQSPRNTYQCAMGKQSIGSIGYNQFQRCDTVVHLMNYTQQPLVTTKTIQLVN 828

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQNA +AVMSY GY+IEDA+I+NKAS+DRGF RC   R   C +    N T   
Sbjct: 829  FDKLPAGQNAIVAVMSYQGYEIEDAIILNKASIDRGFARCYTLRRLTCEITS-GNATSLN 887

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVN-KSMPTISVSAISM------ 1085
               P       K   +    + + ++  GEQ+   QVL++ K+ PT   +  SM      
Sbjct: 888  GFNP------SKSQNKDSDSNNEFVIGVGEQVSPGQVLISTKAPPTDFTTNGSMNGKGTD 941

Query: 1086 ----ATPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1141
                   + K +   Y  +    +++V+++ N     + K+++RQ+R PEIGDKFSSRHG
Sbjct: 942  KNQKTGNDDKYIVNKYNLNTGGCIDRVILTENYNGNKMYKIMVRQSRPPEIGDKFSSRHG 1001

Query: 1142 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            QKGV+GLI E EDMPF ESGI PD+IMNPHG 
Sbjct: 1002 QKGVVGLIAEHEDMPFTESGIVPDLIMNPHGF 1033



 Score =  218 bits (556), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 101/191 (52%), Positives = 137/191 (71%), Gaps = 15/191 (7%)

Query: 1197 LEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICP 1256
            +++V+++ N     + K+++RQ+R PEIGDKFSSRHGQKGV+GLI E EDMPF ESGI P
Sbjct: 965  IDRVILTENYNGNKMYKIMVRQSRPPEIGDKFSSRHGQKGVVGLIAEHEDMPFTESGIVP 1024

Query: 1257 DIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAF---------------GGTKLV 1301
            D+IMNPHG+PSRMTVGKL+EL+A K+ +  GN+ + T F               G  K+ 
Sbjct: 1025 DLIMNPHGFPSRMTVGKLLELVASKSSVFSGNFVDSTPFSNSYSDNLCNDLNNSGSNKMS 1084

Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
            D+ + LI++G++ +GK+I YSGI+G  +   I+ GP+YYQ+LKHMV DKIHAR RGPR  
Sbjct: 1085 DICDILIKNGFHPKGKEILYSGISGNPINTLIFIGPIYYQRLKHMVTDKIHARGRGPRQP 1144

Query: 1362 LTRQPTGRRWK 1372
            +TRQPT  R +
Sbjct: 1145 ITRQPTEGRSR 1155



 Score =  173 bits (438), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 105/257 (40%), Positives = 153/257 (59%), Gaps = 34/257 (13%)

Query: 106 LKDSPEIRDKWKLVLSFLKEKGL-----VKPHIDSFDYFINVEIKKLMQANANIYSDVDP 160
           +KD  +   K K  LS +  + L     V+P +D  D++ N  ++   Q  + ++ D   
Sbjct: 397 MKDCRDFSGKIK-TLSLMAHRVLNVVNNVEP-LDDKDHYGNKRLELAGQMISILFED--- 451

Query: 161 LFYLKYL-DIHVGIADKIIPKIKA---------AQF-DIVNHMRQDTITNALTAAIQTGN 209
            FY K+L ++   I   ++  ++A         + F DI   M  D ITN +  AI TGN
Sbjct: 452 -FYKKFLSNMKKSIESILVKYLEANPNPAKGENSNFPDIFGLMPTDIITNGMQNAIATGN 510

Query: 210 WTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVSGPRSLQGSQWGMLCPSD 269
           W I+RF+ME+ GV+QVLSRLSYIS +GMMT+ +SQFEK RKVSGPR+LQ SQ+G+LCP D
Sbjct: 511 WNIKRFRMEKSGVSQVLSRLSYISSIGMMTKTDSQFEKGRKVSGPRALQPSQFGILCPCD 570

Query: 270 TPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMFNGEELSSP--------- 320
           TPEGE+CGLVKNL+LMTH+T++     +  +++ +G+E I   +  ++ +P         
Sbjct: 571 TPEGESCGLVKNLSLMTHVTSDVPTPVLETLLFTLGVEPIDTLSSHDMFNPWKGTSEKCD 630

Query: 321 ---GVYLVFVNGILAGI 334
                 LV +NGIL GI
Sbjct: 631 NLLNARLVLLNGILLGI 647



 Score =  132 bits (332), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 70/152 (46%), Positives = 100/152 (65%), Gaps = 16/152 (10%)

Query: 676 PRPTFLNMHQFLGFKRFDDFLYE-GKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPF 734
           PR T   + Q +  K   ++L+  G +E++DVNE N+  I + E  I   +TTHLEI+P 
Sbjct: 703 PRLTDELVQQLVENKIKMEYLFNNGILEWIDVNEENNLLIVMREKDIT-NLTTHLEISPM 761

Query: 735 TLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTL 794
           ++LGV AG              L+P+P+HNQ+PRNTYQCAMGKQ++G IGYNQ  R DT+
Sbjct: 762 SILGVVAG--------------LIPFPNHNQSPRNTYQCAMGKQSIGSIGYNQFQRCDTV 807

Query: 795 MYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
           ++ + Y Q+P+V +KTI++ NF KLPAG+  I
Sbjct: 808 VHLMNYTQQPLVTTKTIQLVNFDKLPAGQNAI 839



 Score = 77.0 bits (188), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 64/95 (67%), Gaps = 1/95 (1%)

Query: 442 QKRFQTYKKTPVDDARDFLSSTCIAHIPVINMR-FKMKAMYLAVMIRRMVLALSDPDMLD 500
           + R    K+  ++D  D LS   ++HIP+ + R F  K   L++M  R++  +++ + LD
Sbjct: 369 KDRAPKSKQMILEDTHDILSRVLLSHIPMKDCRDFSGKIKTLSLMAHRVLNVVNNVEPLD 428

Query: 501 DRDYYGNKRLELAGSLLSLMFEDVFKRFNSELKET 535
           D+D+YGNKRLELAG ++S++FED +K+F S +K++
Sbjct: 429 DKDHYGNKRLELAGQMISILFEDFYKKFLSNMKKS 463



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 60/114 (52%), Gaps = 5/114 (4%)

Query: 340 EVCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIML 399
           ++ KP   +   +  + TP  CR+RD TYSAPI V I+Y R      + +L IGR+P+ML
Sbjct: 91  KIGKPFFTDHSKHVFKLTPQLCRIRDFTYSAPILVTIDYFRDYTFTRKENLEIGRIPVML 150

Query: 400 QSSKCVLRNKTEYTSSSRRA-----STSSVTMHSQRTSPLLSCKKLRQKRFQTY 448
           +S  C L + +E  S    +     ++S  +M +    P    K+ R+  +++Y
Sbjct: 151 RSCICFLSSDSESNSDHDSSGLPEYNSSKKSMKNNFDIPDGLSKEDRESFYKSY 204



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 44/64 (68%), Gaps = 2/64 (3%)

Query: 111 EIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANAN--IYSDVDPLFYLKYLD 168
           EI+DKWK++  ++  +G+ + HI+S++ F+  EIK ++ A +N  + +D+ P   L+++D
Sbjct: 30  EIKDKWKILPCYMGMRGIARQHINSYNNFVLHEIKDIINAPSNKVLRTDLYPSLSLEFVD 89

Query: 169 IHVG 172
           I +G
Sbjct: 90  IKIG 93


>gi|390342646|ref|XP_782970.3| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
           subunit RPC2 [Strongylocentrotus purpuratus]
          Length = 831

 Score =  251 bits (641), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 123/211 (58%), Positives = 158/211 (74%), Gaps = 4/211 (1%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVNHM 192
           +D  DY+ N  ++   Q  A ++ D+    + K+       AD+ IP+ +AAQFDIV +M
Sbjct: 369 VDDRDYYGNKRLELAGQLIALLFEDL----FKKFNSELKKYADQNIPRPRAAQFDIVKYM 424

Query: 193 RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVS 252
           RQD ITN L  AI TGNW+++RFKMER GVTQVLSRLSYIS LGMMTRI+SQFEKTRKVS
Sbjct: 425 RQDQITNGLITAISTGNWSVKRFKMERAGVTQVLSRLSYISCLGMMTRISSQFEKTRKVS 484

Query: 253 GPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMF 312
           GPRSLQ SQWGMLCPSDTPEGE CGL+KNLALMTHITT+ +E  ++K+ +N+G+E + + 
Sbjct: 485 GPRSLQPSQWGMLCPSDTPEGEGCGLIKNLALMTHITTDMEEAPIVKLAFNLGVEPVHLM 544

Query: 313 NGEELSSPGVYLVFVNGILAGITCHHKEVCK 343
           +GEELS   VY+VF+NG + G+   HK + +
Sbjct: 545 SGEELSMKDVYVVFLNGNILGVVREHKRLMR 575



 Score =  178 bits (451), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 82/114 (71%), Positives = 95/114 (83%)

Query: 1259 IMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKD 1318
            IMNPHG+PSRMTVGKLIE LAGKAG++EG +  GTAFGG K+VD+ E+L +HG+NY GKD
Sbjct: 626  IMNPHGFPSRMTVGKLIEFLAGKAGVLEGKFHYGTAFGGDKVVDICEDLRKHGFNYLGKD 685

Query: 1319 IFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
               SGITGE L AYIY GPVYYQKLKHMV DK+HAR++GPR VLTRQPT  R +
Sbjct: 686  FLTSGITGEPLTAYIYFGPVYYQKLKHMVLDKMHARAKGPRAVLTRQPTEGRAR 739



 Score =  119 bits (299), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 55/98 (56%), Positives = 78/98 (79%), Gaps = 2/98 (2%)

Query: 439 KLRQKRFQT--YKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDP 496
           K+RQ+R      KK+ VD+AR+ L++T +AHIPV+   F+ K++YLA+M+RR++ A  D 
Sbjct: 307 KVRQRRMWGGGSKKSKVDEARELLATTILAHIPVVQFNFRAKSIYLALMVRRVIEAQGDA 366

Query: 497 DMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELKE 534
             +DDRDYYGNKRLELAG L++L+FED+FK+FNSELK+
Sbjct: 367 VKVDDRDYYGNKRLELAGQLIALLFEDLFKKFNSELKK 404



 Score =  113 bits (283), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 51/70 (72%), Positives = 61/70 (87%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQ 400
           V  P++EESFN T+ T+PHECRLRD+TYSAPITVDIEYTRG QRV+R++L IGRMPIML+
Sbjct: 99  VGSPDVEESFNITKPTSPHECRLRDMTYSAPITVDIEYTRGQQRVIRNNLPIGRMPIMLR 158

Query: 401 SSKCVLRNKT 410
           SS CVL  K+
Sbjct: 159 SSNCVLTGKS 168



 Score = 71.6 bits (174), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/65 (52%), Positives = 48/65 (73%), Gaps = 1/65 (1%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFY-LKYLDIH 170
           ++DKWKL+ +FLK +GLV+ HIDSF+YFINVE+  L+  N +IY+    L   L+YL+I+
Sbjct: 39  VKDKWKLLPAFLKVRGLVRQHIDSFNYFINVEVXHLISLNLSIYNKXTLLHLPLRYLNIY 98

Query: 171 VGIAD 175
           VG  D
Sbjct: 99  VGSPD 103


>gi|216296553|gb|ACJ72061.1| DNA-directed RNA polymerase III polypeptide B [Trichoplax adhaerens]
          Length = 192

 Score =  249 bits (636), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 111/192 (57%), Positives = 153/192 (79%), Gaps = 5/192 (2%)

Query: 957  YAQRPMVESKTIRITNFHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYR 1016
            Y Q P+V++KTI +  F KLPAGQNA IAVMSYSGYDIEDA+I+NKAS+DRG+GRC+VYR
Sbjct: 1    YPQVPLVKTKTIDLIEFDKLPAGQNAIIAVMSYSGYDIEDAVILNKASVDRGYGRCIVYR 60

Query: 1017 NSKCVLKQYPNQTHDRILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMP 1076
               C LK+YPNQTHD ++GP  +A T K +++H+ LD DGI  PGE++  +Q+L+NKS+P
Sbjct: 61   KQACSLKKYPNQTHDVVMGPQADAQTGKTIWKHKVLDADGICMPGEKVESKQILINKSIP 120

Query: 1077 TISVSAIS-----MATPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPE 1131
            +++ + I+     +  PEY ++P++Y+G   +Y+E V++SSN+++AFLIK LLR +RRPE
Sbjct: 121  SVTSTPIAGTGQKLLQPEYIDMPMTYRGPTDAYVENVMISSNNDEAFLIKTLLRSSRRPE 180

Query: 1132 IGDKFSSRHGQK 1143
            IGDKFSSRHGQK
Sbjct: 181  IGDKFSSRHGQK 192



 Score = 82.8 bits (203), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 61/90 (67%), Gaps = 3/90 (3%)

Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRIT-EYKEVPVSYKGSVPSYLEKVLVSSN 1205
            G  VE + +  N+S   P +   P    G   +  EY ++P++Y+G   +Y+E V++SSN
Sbjct: 105  GEKVESKQILINKS--IPSVTSTPIAGTGQKLLQPEYIDMPMTYRGPTDAYVENVMISSN 162

Query: 1206 SEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1235
            +++AFLIK LLR +RRPEIGDKFSSRHGQK
Sbjct: 163  NDEAFLIKTLLRSSRRPEIGDKFSSRHGQK 192


>gi|123487429|ref|XP_001324946.1| DNA-directed RNA polymerase, beta subunit family protein [Trichomonas
            vaginalis G3]
 gi|121907837|gb|EAY12723.1| DNA-directed RNA polymerase, beta subunit family protein [Trichomonas
            vaginalis G3]
          Length = 1142

 Score =  248 bits (634), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 131/271 (48%), Positives = 171/271 (63%), Gaps = 25/271 (9%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            G+VP PHHNQ+PRNTYQCAMGKQA+G    N  +R+D   Y   Y Q+PMV+++TIR++ 
Sbjct: 690  GVVPCPHHNQSPRNTYQCAMGKQAIGPTALNIMHRVDKSTYFNCYPQQPMVQTRTIRLSR 749

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            +H++P GQNA +A+MSYSG+DIEDAL+MNKASLDRGFGR         +LK Y       
Sbjct: 750  YHEMPCGQNAMVAIMSYSGHDIEDALLMNKASLDRGFGRRYYLSKLDLMLKNYQGGVIGD 809

Query: 1033 ILGPLLEADTRKPVY----RHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATP 1088
             + PL   D  +P      ++  LD DGI+ PGE+I +  +  NK +P            
Sbjct: 810  RIAPL---DRERPENIASPQYSLLDADGIIRPGERIEKGMIYANKYVPL----------- 855

Query: 1089 EYKEVPVSYKGS------VPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQ 1142
             ++E PV +          P  ++ V V + +E   +IK+     RRPE+GDKFSSRHGQ
Sbjct: 856  NFEESPVKFMAQPARYNYYPVMIQNVSVYT-TETTQVIKIKTADFRRPELGDKFSSRHGQ 914

Query: 1143 KGVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            KGVIGLIV QEDMP+ E GICPD+IMNPHG 
Sbjct: 915  KGVIGLIVPQEDMPYTEDGICPDMIMNPHGF 945



 Score =  220 bits (560), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 108/195 (55%), Positives = 138/195 (70%), Gaps = 7/195 (3%)

Query: 1182 YKEVPVSYKGS------VPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1235
            ++E PV +          P  ++ V V + +E   +IK+     RRPE+GDKFSSRHGQK
Sbjct: 857  FEESPVKFMAQPARYNYYPVMIQNVSVYT-TETTQVIKIKTADFRRPELGDKFSSRHGQK 915

Query: 1236 GVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAF 1295
            GVIGLIV QEDMP+ E GICPD+IMNPHG+PSRMTVGK+IEL++GK G++ G    GTAF
Sbjct: 916  GVIGLIVPQEDMPYTEDGICPDMIMNPHGFPSRMTVGKMIELVSGKVGILTGRIGNGTAF 975

Query: 1296 GGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARS 1355
               ++ D+ ++LI  GY+Y GKD+  SGITGE L AYI+ GPV+YQ LKHMV+DK+ AR+
Sbjct: 976  SSDRVKDIADDLIAAGYSYSGKDMLMSGITGEPLYAYIFFGPVFYQSLKHMVKDKMQARA 1035

Query: 1356 RGPRVVLTRQPTGRR 1370
             G    LTRQPT  R
Sbjct: 1036 TGQVQYLTRQPTQGR 1050



 Score =  151 bits (382), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 73/156 (46%), Positives = 103/156 (66%), Gaps = 2/156 (1%)

Query: 187 DIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFE 246
           +I   M  +TIT+ L  AI +GNW I RFKM R GV+Q+L R+SY+  + M+TRI+S FE
Sbjct: 406 NIAQAMHSETITHGLKYAISSGNWNITRFKMMRAGVSQLLGRMSYLQFVSMVTRISSHFE 465

Query: 247 KTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGI 306
           KT+KV+G R L  SQ+G +CPSDTPEG  CGL+KN AL  H+T   D     + + ++G+
Sbjct: 466 KTQKVAGARLLYPSQFGFICPSDTPEGAQCGLIKNFALTVHVTVWADPAPARRTLLDLGV 525

Query: 307 EHIAMFNGEELSSPGVYLVFVNGILAGITCHHKEVC 342
           E + +F+GEE+S+   Y+V +NG   GI      +C
Sbjct: 526 EELVVFSGEEISNN--YIVMLNGEPIGIIDDPYSIC 559



 Score =  114 bits (284), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 63/148 (42%), Positives = 83/148 (56%), Gaps = 30/148 (20%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIR---------PGVT-------THLEIAPFT 735
           FD  L  G IEY+DVNE  D  IA ++  I          P +        THLEI    
Sbjct: 624 FDYLLDNGIIEYVDVNEMTDCLIAFNDKDIEEERKNCVNDPPLAKGELRYFTHLEIHNAQ 683

Query: 736 LLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLM 795
           +LGVCAG+              VP PHHNQ+PRNTYQCAMGKQA+G    N  +R+D   
Sbjct: 684 MLGVCAGV--------------VPCPHHNQSPRNTYQCAMGKQAIGPTALNIMHRVDKST 729

Query: 796 YNLVYAQRPMVESKTIRITNFHKLPAGK 823
           Y   Y Q+PMV+++TIR++ +H++P G+
Sbjct: 730 YFNCYPQQPMVQTRTIRLSRYHEMPCGQ 757



 Score = 60.1 bits (144), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 41/91 (45%), Positives = 62/91 (68%), Gaps = 1/91 (1%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
            R+FL S  + HIP     F+ K++++  M R ++L+  DP M+D RD++GNKRLELAG 
Sbjct: 312 GREFLRSMVLPHIPSTLTDFRRKSVFVGFMTRWLLLSAIDPRMIDGRDFFGNKRLELAGE 371

Query: 516 LLSLMFEDVFKRFNSELKETNLSGVVNLVSG 546
           LL L+FED+FK FN+ +++T +S  +N   G
Sbjct: 372 LLELLFEDLFKTFNASMQKT-VSRTINKSKG 401



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 35/57 (61%)

Query: 357 TPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKTEYT 413
           TP  CRL D TYS  + VD ++  GS     ++  I ++PIMLQS++C L N ++ T
Sbjct: 97  TPQMCRLSDETYSGNVLVDYDFVNGSTVKSFNNQCIAKLPIMLQSNRCYLYNASDET 153



 Score = 48.9 bits (115), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 36/62 (58%)

Query: 110 PEIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDI 169
           P+   KW L+   LK  GL+K  ++SF+ FI   + K+M AN  +    +P  Y++Y +I
Sbjct: 25  PDPDSKWNLIPLILKSTGLIKLQLNSFNDFIESGLTKIMNANKEVIFSENPRVYIRYKNI 84

Query: 170 HV 171
           +V
Sbjct: 85  YV 86


>gi|403222729|dbj|BAM40860.1| DNA-directed RNA polymerase III [Theileria orientalis strain
            Shintoku]
          Length = 1220

 Score =  246 bits (628), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 122/278 (43%), Positives = 177/278 (63%), Gaps = 25/278 (8%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+P+P+HNQ+PRNTYQCAMGKQ++G IGYNQ +R DT+++ + Y Q P+V +KTI++ N
Sbjct: 727  GLIPFPNHNQSPRNTYQCAMGKQSIGSIGYNQLHRCDTIVHLMNYTQVPLVTTKTIQLVN 786

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKC-VLKQYPNQT-- 1029
            F KLPAGQNA +AVMSY GY+IEDA+I+N+AS+DRGF RC   +N  C +    PN +  
Sbjct: 787  FDKLPAGQNAIVAVMSYQGYEIEDAIILNRASIDRGFSRCFTLKNISCEITNATPNDSSG 846

Query: 1030 -HDRILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLV-------------NKSM 1075
             H+       + D           +++ ++  GE++   QVL+             N + 
Sbjct: 847  YHNSGREGFKDKDPNA--------NKEYVIGVGERVLPGQVLISTRDNRDFAASYGNVNA 898

Query: 1076 PTISVSAISMATPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDK 1135
                 S+        K +   Y  +   ++++++++ +S    L K+++RQ+R PEIGDK
Sbjct: 899  DKYDKSSAGGKEDRAKYMSFKYNLNASGHIDRIILTESSNGNRLYKVIVRQSRPPEIGDK 958

Query: 1136 FSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            FSSRHGQKGV+GLI E EDMPF ESG+ PD++MNPHG 
Sbjct: 959  FSSRHGQKGVVGLIAEPEDMPFTESGMVPDLVMNPHGF 996



 Score =  210 bits (534), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 105/218 (48%), Positives = 145/218 (66%), Gaps = 28/218 (12%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            K +   Y  +   ++++++++ +S    L K+++RQ+R PEIGDKFSSRHGQKGV+GLI 
Sbjct: 914  KYMSFKYNLNASGHIDRIILTESSNGNRLYKVIVRQSRPPEIGDKFSSRHGQKGVVGLIA 973

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNY------------- 1289
            E EDMPF ESG+ PD++MNPHG+PSRMTVGKL+EL+A K+ ++ G +             
Sbjct: 974  EPEDMPFTESGMVPDLVMNPHGFPSRMTVGKLLELVASKSSVLSGRFVDSTPFSNSYSNN 1033

Query: 1290 ------KEGTAFGGTKLV--DVQEE-------LIRHGYNYQGKDIFYSGITGEALEAYIY 1334
                   EGT  GG + +  D Q+        LI+ G++ +GK++ YSGITG  +   I+
Sbjct: 1034 HQGGGGDEGTDSGGYENLGNDAQDNINEICNILIKKGFHPKGKEVLYSGITGNLINTLIF 1093

Query: 1335 SGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
             GP+YYQ+LKHMV DKIHARSRGPR +LTRQPT  R K
Sbjct: 1094 FGPIYYQRLKHMVMDKIHARSRGPRQMLTRQPTEGRSK 1131



 Score =  168 bits (425), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 76/131 (58%), Positives = 102/131 (77%)

Query: 187 DIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFE 246
           DI+ ++  D +T  +T AI TGNW I+RF+MER GV+QVLSRLSYIS +GMMTR NSQFE
Sbjct: 447 DILRNLPTDILTRGMTTAISTGNWNIKRFRMERSGVSQVLSRLSYISSIGMMTRTNSQFE 506

Query: 247 KTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGI 306
           K RKVSGPR+LQ SQ+G++CP DTPEGE+CGLVKNL+LMTH+T++     +  +++ +G+
Sbjct: 507 KGRKVSGPRALQPSQFGLICPCDTPEGESCGLVKNLSLMTHVTSDVPSSILETLLFTLGV 566

Query: 307 EHIAMFNGEEL 317
           E I   +  +L
Sbjct: 567 EPIDTVSSYDL 577



 Score =  132 bits (332), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 70/153 (45%), Positives = 101/153 (66%), Gaps = 16/153 (10%)

Query: 675 QPRPTFLNMHQFLGFKRFDDFLYE-GKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAP 733
           +P+ T   + + L  K   D+L+  G +E++DVNE N+  I + E  I   +TTHLEI+P
Sbjct: 660 KPKLTDEILQKLLLNKINIDYLFNNGILEWIDVNEENNLLIVMREKDIN-HMTTHLEISP 718

Query: 734 FTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDT 793
            ++LGV AG              L+P+P+HNQ+PRNTYQCAMGKQ++G IGYNQ +R DT
Sbjct: 719 MSILGVVAG--------------LIPFPNHNQSPRNTYQCAMGKQSIGSIGYNQLHRCDT 764

Query: 794 LMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
           +++ + Y Q P+V +KTI++ NF KLPAG+  I
Sbjct: 765 IVHLMNYTQVPLVTTKTIQLVNFDKLPAGQNAI 797



 Score = 68.9 bits (167), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 57/83 (68%), Gaps = 1/83 (1%)

Query: 453 VDDARDFLSSTCIAHIPVIN-MRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLE 511
           +++  D L    ++HIP+ +   F  K   L++M  R++  +++ + LDD+D+YGNKRLE
Sbjct: 339 IEETHDLLCRVLLSHIPMRDSTDFSGKIKTLSLMAHRVLNVVNNVEPLDDKDHYGNKRLE 398

Query: 512 LAGSLLSLMFEDVFKRFNSELKE 534
           LAG ++S++FED++K+F   LK+
Sbjct: 399 LAGQMISILFEDLYKKFLFHLKK 421



 Score = 68.9 bits (167), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 46/66 (69%), Gaps = 1/66 (1%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQ 400
           V +P IEE+       TP  CR+RDLTYSAPI VD++Y RG + + +++L IGR+P+ML+
Sbjct: 92  VGRPCIEENM-IPIMLTPQMCRIRDLTYSAPIYVDVDYVRGQEYIRKNNLEIGRIPVMLR 150

Query: 401 SSKCVL 406
           S  C L
Sbjct: 151 SCICAL 156



 Score = 65.1 bits (157), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/110 (35%), Positives = 67/110 (60%), Gaps = 8/110 (7%)

Query: 85  LGTVKAV--HGTYLTMVTDETSKLKDS-PEIRDKWKLVLSFLKEKGLVKPHIDSFDYFIN 141
           +G +K V    TY +       +L DS  EI+DKWK++  +L  +G+ + HI+S+D F+ 
Sbjct: 1   MGKLKNVTFKDTYSSDFKVNPDELYDSVKEIKDKWKILPYYLGMRGIARQHINSYDNFVL 60

Query: 142 VEIKKLMQANAN--IYSDVDPLFYLKYLDIHVG---IADKIIPKIKAAQF 186
            EIK +M+A +N  I +++DP F+++++DI VG   I + +IP +   Q 
Sbjct: 61  REIKDIMRAPSNKVIRTELDPNFFIEFVDIRVGRPCIEENMIPIMLTPQM 110


>gi|156087649|ref|XP_001611231.1| DNA-directed RNA polymerase, beta subunit [Babesia bovis T2Bo]
 gi|154798485|gb|EDO07663.1| DNA-directed RNA polymerase, beta subunit, putative [Babesia bovis]
          Length = 1171

 Score =  246 bits (628), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 120/264 (45%), Positives = 176/264 (66%), Gaps = 16/264 (6%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+P+P+HNQ+PRNTYQCAMGKQ++G IGYNQ NR DT+++ +VY QRP+V +K I++ N
Sbjct: 721  GLIPFPNHNQSPRNTYQCAMGKQSIGSIGYNQLNRCDTILHLMVYPQRPLVTTKAIQLVN 780

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F KLPAGQN  +AVMSY GY+IEDA+++NKAS +RGF RC   R     +++  N   +R
Sbjct: 781  FDKLPAGQNVIVAVMSYQGYEIEDAVVINKASSERGFSRCYSLRRVTVEIEKL-NHAAER 839

Query: 1033 ILGPLLEADTRKPVYRHRALDQ---DGIVAPGEQICERQVLVNKSMPTISVSAISMATPE 1089
              G     + R  +     +D    D ++  G+++ +   L+ K   T        +T +
Sbjct: 840  PGG----LNNRPQITNVTPVDDLTGDSVIGVGQKVKKDDTLLKKLTQT--------STGQ 887

Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             K   + Y+ + P+Y+++V+  +   ++ + K++LRQ R PEIGDK+SSRHGQKGV+GLI
Sbjct: 888  IKVTDIKYQFNQPAYVDRVMCITTIAESVMYKIMLRQVRLPEIGDKYSSRHGQKGVVGLI 947

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
              QE++PF+E G  PD+IMNPHG 
Sbjct: 948  ESQENLPFSEHGWVPDLIMNPHGF 971



 Score =  228 bits (581), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 104/192 (54%), Positives = 144/192 (75%)

Query: 1181 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1240
            + K   + Y+ + P+Y+++V+  +   ++ + K++LRQ R PEIGDK+SSRHGQKGV+GL
Sbjct: 887  QIKVTDIKYQFNQPAYVDRVMCITTIAESVMYKIMLRQVRLPEIGDKYSSRHGQKGVVGL 946

Query: 1241 IVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKL 1300
            I  QE++PF+E G  PD+IMNPHG+PSRMTVGK++EL+A KA ++ G +++GT F    L
Sbjct: 947  IESQENLPFSEHGWVPDLIMNPHGFPSRMTVGKMLELVAAKAAVLNGIFEDGTPFEADSL 1006

Query: 1301 VDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRV 1360
              ++  LI+ G++  GK+I YSGITGE LE  I++GP+YYQKLKHMV DKIHAR+ GPR 
Sbjct: 1007 PAIERSLIKKGFHPAGKEILYSGITGEPLETLIFTGPMYYQKLKHMVSDKIHARAVGPRQ 1066

Query: 1361 VLTRQPTGRRWK 1372
             LTRQPT  R K
Sbjct: 1067 SLTRQPTEGRSK 1078



 Score =  169 bits (428), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 80/158 (50%), Positives = 112/158 (70%), Gaps = 1/158 (0%)

Query: 187 DIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFE 246
           D +  +  D IT  + A I TGNW I+RF++ER GV+Q+LSRLSYIS LGMMT+ NSQFE
Sbjct: 451 DCLVSLPTDIITRGMQATISTGNWNIKRFRIERSGVSQILSRLSYISCLGMMTKTNSQFE 510

Query: 247 KTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGI 306
           K RKVS PR+LQ SQ G++CP DTPEGE+CGLVKNL+LM H+TT+ D + +++++Y +G+
Sbjct: 511 KGRKVSKPRALQPSQLGLICPCDTPEGESCGLVKNLSLMNHVTTDGDIERLVELLYWLGV 570

Query: 307 EHIAMFNGEE-LSSPGVYLVFVNGILAGITCHHKEVCK 343
           E     +  +         VF+NGI+ G+  + K++ K
Sbjct: 571 ESADALSARDCFDDDRNVTVFLNGIIIGVHQNGKQLIK 608



 Score =  141 bits (356), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 67/125 (53%), Positives = 91/125 (72%), Gaps = 15/125 (12%)

Query: 699 GKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLV 758
           G +E++DVNE N++ I + ES I P  TTHLEI+P ++LGV AG              L+
Sbjct: 679 GVLEWIDVNEENNTLIVMRESDITPK-TTHLEISPMSMLGVVAG--------------LI 723

Query: 759 PYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHK 818
           P+P+HNQ+PRNTYQCAMGKQ++G IGYNQ NR DT+++ +VY QRP+V +K I++ NF K
Sbjct: 724 PFPNHNQSPRNTYQCAMGKQSIGSIGYNQLNRCDTILHLMVYPQRPLVTTKAIQLVNFDK 783

Query: 819 LPAGK 823
           LPAG+
Sbjct: 784 LPAGQ 788



 Score = 80.9 bits (198), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 39/94 (41%), Positives = 61/94 (64%), Gaps = 1/94 (1%)

Query: 442 QKRFQTYKKTPVDDARDFLSSTCIAHIPVINMR-FKMKAMYLAVMIRRMVLALSDPDMLD 500
           ++R     +  ++D  D L+   ++HIP+ N R F  K   L +M RR++   S  + +D
Sbjct: 332 KERLPKTNQNLIEDTHDILTRVLLSHIPMRNCRDFSGKIKSLCLMARRVLSVASGKEPMD 391

Query: 501 DRDYYGNKRLELAGSLLSLMFEDVFKRFNSELKE 534
           D+D+YGNKRLELAG L+S++FED+FK F  +LK+
Sbjct: 392 DKDHYGNKRLELAGQLISILFEDLFKAFLGQLKK 425



 Score = 60.1 bits (144), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 42/66 (63%), Gaps = 1/66 (1%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQ 400
           V +P + E+ N     TP  CR+RD+TYSAP+ VD+EY  G + V    + IGR+P+ML+
Sbjct: 97  VGEPTMSENNNKPILLTPQLCRMRDITYSAPMYVDVEYYNG-EGVASKRVEIGRLPVMLR 155

Query: 401 SSKCVL 406
           S  C L
Sbjct: 156 SCVCAL 161



 Score = 55.1 bits (131), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 46/64 (71%), Gaps = 2/64 (3%)

Query: 111 EIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANAN--IYSDVDPLFYLKYLD 168
           +I+DKWK++  ++  +G+ + HI+S++ F+  EIK+++ A +N  + SD    FY++++D
Sbjct: 35  DIKDKWKILPCYMGMRGIARQHINSYNNFVLREIKEIVNAPSNKMLKSDACKKFYIEFID 94

Query: 169 IHVG 172
           I+VG
Sbjct: 95  INVG 98


>gi|387592536|gb|EIJ87560.1| RNA polymerase [Nematocida parisii ERTm3]
 gi|387595162|gb|EIJ92787.1| RNA polymerase [Nematocida parisii ERTm1]
          Length = 1089

 Score =  245 bits (625), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 119/261 (45%), Positives = 162/261 (62%), Gaps = 31/261 (11%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            G++PYPHHNQ+PRNTYQCAMGKQ +G  G +Q+ R+D   + +V  QRP+  ++ + I  
Sbjct: 661  GVIPYPHHNQSPRNTYQCAMGKQGVGVTGVDQRRRMDGANFFMVNPQRPLAATRGMEIIK 720

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            +++LPAGQN TIAVMS SGYDIEDALI+NKAS+DRG GR L+++     L+ YP    D 
Sbjct: 721  YNELPAGQNLTIAVMSMSGYDIEDALILNKASIDRGIGRALLFKTHALSLRTYPGGAADT 780

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKE 1092
            I+G                   DGI +PG ++ E             ++ I   TP   +
Sbjct: 781  IVG-------------------DGIPSPGMKVQE------------GITFIDRRTPMGSK 809

Query: 1093 VPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQ 1152
                Y+G   + ++K  +    +D   IK ++++ R P IGDKFSSRHGQKGV+GLI+ Q
Sbjct: 810  AGAVYRGLDSASIDKTAIMRTGDDLITIKAVVKEHRIPRIGDKFSSRHGQKGVVGLILPQ 869

Query: 1153 EDMPFNESGICPDIIMNPHGL 1173
            EDMPFNE GI PD++MNPHG 
Sbjct: 870  EDMPFNEMGISPDLVMNPHGF 890



 Score =  213 bits (541), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 101/188 (53%), Positives = 133/188 (70%), Gaps = 5/188 (2%)

Query: 1189 YKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMP 1248
            Y+G   + ++K  +    +D   IK ++++ R P IGDKFSSRHGQKGV+GLI+ QEDMP
Sbjct: 814  YRGLDSASIDKTAIMRTGDDLITIKAVVKEHRIPRIGDKFSSRHGQKGVVGLILPQEDMP 873

Query: 1249 FNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYK----EGTAFGGTKLVDVQ 1304
            FNE GI PD++MNPHG+PSRMTVGK++EL+ GK+ +  G+ K      TAFGG K  D+ 
Sbjct: 874  FNEMGISPDLVMNPHGFPSRMTVGKILELVTGKS-IANGSKKLTQYAATAFGGVKAQDIA 932

Query: 1305 EELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTR 1364
             ELI  GY+  GK+    G +GE +   I+ GPV+YQ+LKHMV DK+HAR+RGPR VLTR
Sbjct: 933  NELISLGYSETGKETLICGTSGEQIPVRIFFGPVFYQRLKHMVTDKMHARARGPRAVLTR 992

Query: 1365 QPTGRRWK 1372
            QPT  R +
Sbjct: 993  QPTEGRCR 1000



 Score =  162 bits (409), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 86/202 (42%), Positives = 134/202 (66%), Gaps = 11/202 (5%)

Query: 137 DYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIA-DKIIPK-IKAAQFDIVNH--M 192
           D+  N  I+   Q  + ++ D+     LK L+  +  A D+++ K  +A + D ++   M
Sbjct: 348 DFVGNKRIELTGQMLSLLFEDL-----LKRLNTEIKKALDRVLCKRARAQELDALHFLVM 402

Query: 193 RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVS 252
            +  IT  L  AI TG+W+++RF+MER G+TQVL+RLS +S +GM +R++SQFEKTRKVS
Sbjct: 403 NRGMITTGLLRAISTGSWSLKRFRMERAGITQVLTRLSRLSAIGMCSRVSSQFEKTRKVS 462

Query: 253 GPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMF 312
           GPR+L  SQWG+ CP+DTPEGEACGLVK+LA++T IT    E++++  +  +GIE I++ 
Sbjct: 463 GPRALHCSQWGVFCPADTPEGEACGLVKSLAMLTEITPAESEESVISALSFLGIEDISVI 522

Query: 313 NGEELSSPGVYLVFVNGILAGI 334
           +  ++        +VNG++ GI
Sbjct: 523 STGDMEKS--KKCWVNGVIIGI 542



 Score =  120 bits (300), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 60/136 (44%), Positives = 83/136 (61%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G+K  +D L EG IE +D NE  +S IAV  + I    TTHLEI P  +LG  AG+    
Sbjct: 608 GYKTVNDLLREGLIECIDQNEAKNSLIAVWRTEITQD-TTHLEIDPAAILGYVAGV---- 662

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                     +PYPHHNQ+PRNTYQCAMGKQ +G  G +Q+ R+D   + +V  QRP+  
Sbjct: 663 ----------IPYPHHNQSPRNTYQCAMGKQGVGVTGVDQRRRMDGANFFMVNPQRPLAA 712

Query: 808 SKTIRITNFHKLPAGK 823
           ++ + I  +++LPAG+
Sbjct: 713 TRGMEIIKYNELPAGQ 728



 Score = 76.6 bits (187), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 38/84 (45%), Positives = 56/84 (66%), Gaps = 2/84 (2%)

Query: 453 VDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMV-LALSDPDML-DDRDYYGNKRL 510
           +D+AR  L    +AHIP      + KA YL+VM R ++  A  + D L +D+D+ GNKR+
Sbjct: 296 IDEARLLLCDIILAHIPGTGTDMRRKAEYLSVMARMLIDTANGNTDTLQNDKDFVGNKRI 355

Query: 511 ELAGSLLSLMFEDVFKRFNSELKE 534
           EL G +LSL+FED+ KR N+E+K+
Sbjct: 356 ELTGQMLSLLFEDLLKRLNTEIKK 379



 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 44/66 (66%), Gaps = 2/66 (3%)

Query: 344 PEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSK 403
           P +EE+    R  TP ECR+R++TYS  I VD+EYTRG   +   ++V+G+MPIML  S+
Sbjct: 79  PSVEENM-VKRYITPEECRIRNMTYSGDIVVDVEYTRGKDIISSRNVVVGKMPIML-GSR 136

Query: 404 CVLRNK 409
             LR K
Sbjct: 137 LSLRQK 142



 Score = 57.4 bits (137), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 27/50 (54%), Positives = 35/50 (70%)

Query: 122 FLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           FL EKGL + HI+SF+ F+  EIK +++ N  I SDVD  FY+KY DI V
Sbjct: 27  FLYEKGLNRHHIESFNDFVEREIKTVLRTNNFIDSDVDSAFYMKYTDIRV 76


>gi|340052083|emb|CCC46353.1| DNA-directed RNA polymerase I, fragment, partial [Trypanosoma vivax
            Y486]
          Length = 1112

 Score =  243 bits (621), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 128/267 (47%), Positives = 170/267 (63%), Gaps = 20/267 (7%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            G++P+PHHNQ+ RNT+Q AMGKQA+G I YNQ  R+DT++    Y QRP+  SK + +TN
Sbjct: 665  GIIPFPHHNQSARNTFQSAMGKQALGTIAYNQYIRMDTVLMLGAYPQRPLCRSKAMSLTN 724

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            +  L AG NA + VMSYSGYDIEDA + N+ SLDRG+GRC+V R  +  L++ PN  +D 
Sbjct: 725  YEALGAGINAMVCVMSYSGYDIEDAQVYNRCSLDRGYGRCVVLRKHEVELQRLPNGEYDF 784

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKE 1092
            IL           V +HRAL+ DGI + G  + +  VLVN+  P         A  E + 
Sbjct: 785  IL------PGDPTVSKHRALNSDGIASKGAIVRQFDVLVNRYTPA--------AASEPRP 830

Query: 1093 VPVSYKGSVPSYLEKVLVS-SNSEDAFL-----IKMLLRQTRRPEIGDKFSSRHGQKGVI 1146
             P+ YK   P+ ++ V++S     D  L     IK++ R+ R PE GDKFSSRHGQKGV+
Sbjct: 831  NPLIYKYPQPAVVDHVVISPPGDSDRSLDVEQKIKVVTREVRIPEPGDKFSSRHGQKGVV 890

Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGL 1173
            GLI +  +MPFNE GI PD+IMNPHG 
Sbjct: 891  GLITDGVNMPFNEMGITPDMIMNPHGF 917



 Score =  233 bits (594), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 111/199 (55%), Positives = 146/199 (73%), Gaps = 6/199 (3%)

Query: 1180 TEYKEVPVSYKGSVPSYLEKVLVSS-NSEDAFL-----IKMLLRQTRRPEIGDKFSSRHG 1233
            +E +  P+ YK   P+ ++ V++S     D  L     IK++ R+ R PE GDKFSSRHG
Sbjct: 826  SEPRPNPLIYKYPQPAVVDHVVISPPGDSDRSLDVEQKIKVVTREVRIPEPGDKFSSRHG 885

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGT 1293
            QKGV+GLI +  +MPFNE GI PD+IMNPHG+PSRMTVGKL+EL++ K   + G + +GT
Sbjct: 886  QKGVVGLITDGVNMPFNEMGITPDMIMNPHGFPSRMTVGKLLELVSSKVSALTGKFGDGT 945

Query: 1294 AFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHA 1353
            AF G    D+  EL+RHG+NY GKD+FYSGITGE L+AY++ GP+YYQ+LKHMV DK+HA
Sbjct: 946  AFAGDNAEDMGAELVRHGFNYHGKDLFYSGITGELLQAYVFFGPIYYQRLKHMVTDKMHA 1005

Query: 1354 RSRGPRVVLTRQPTGRRWK 1372
            R+ GPR +LTRQPT  R +
Sbjct: 1006 RATGPRSMLTRQPTEGRSR 1024



 Score =  169 bits (428), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 77/151 (50%), Positives = 106/151 (70%), Gaps = 2/151 (1%)

Query: 193 RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVS 252
           + + I N +  A+ +G W ++RF M RQG+TQVLSRLSYIS +GMMTR+ S FEK+RK+S
Sbjct: 404 KMEVIQNGMRVALSSGRWELKRFNMSRQGITQVLSRLSYISCIGMMTRLASSFEKSRKIS 463

Query: 253 GPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMF 312
           GPRSLQ SQWGM+CP DTPEGE+CGLVKN A+++ +T + D+  +    +N+G+E +   
Sbjct: 464 GPRSLQPSQWGMVCPCDTPEGESCGLVKNFAILSQVTLDMDDSFVRAAAHNLGVEEVDCI 523

Query: 313 NGEELSSPGVYLVFVNGILAGITCHHKEVCK 343
              E    G Y VF+NGIL GI  +   +C+
Sbjct: 524 TPSEFL--GHYTVFLNGILVGIHRYPSLLCR 552



 Score =  126 bits (316), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 65/131 (49%), Positives = 82/131 (62%), Gaps = 15/131 (11%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKR 751
            +DFL EG +E++DVNE ND  IAV    I    TTHLEI P +LLGV AGI        
Sbjct: 616 INDFLAEGLVEFIDVNEANDCLIAVYPKDIERH-TTHLEIEPLSLLGVVAGI-------- 666

Query: 752 FHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTI 811
                 +P+PHHNQ+ RNT+Q AMGKQA+G I YNQ  R+DT++    Y QRP+  SK +
Sbjct: 667 ------IPFPHHNQSARNTFQSAMGKQALGTIAYNQYIRMDTVLMLGAYPQRPLCRSKAM 720

Query: 812 RITNFHKLPAG 822
            +TN+  L AG
Sbjct: 721 SLTNYEALGAG 731



 Score = 80.5 bits (197), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 59/89 (66%), Gaps = 4/89 (4%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMR----FKMKAMYLAVMIRRMVLALSDPDMLDDRDY 504
           +K+  D A DFL++  + HI    ++    F+ KA+Y+  M+RRM+ A  D  +LD+RD+
Sbjct: 291 QKSKADSAADFLANVLLCHIREGEVQRDWNFRHKALYVCFMVRRMIEASIDSSLLDERDF 350

Query: 505 YGNKRLELAGSLLSLMFEDVFKRFNSELK 533
           YGNKR E  G+L+ L+FED+ K++N  +K
Sbjct: 351 YGNKRFETTGTLMGLLFEDLLKQYNRVVK 379



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/74 (45%), Positives = 44/74 (59%), Gaps = 4/74 (5%)

Query: 341 VCKP-EIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYT---RGSQRVVRSDLVIGRMP 396
           VC+P EI       +  +PHECR RDLTY   I VD+EYT   R  +    +D+ IG +P
Sbjct: 62  VCQPREIVGKGQLPKPVSPHECRTRDLTYRGDIVVDVEYTSRDRTKRLCSDTDIKIGTIP 121

Query: 397 IMLQSSKCVLRNKT 410
           IML+SS C L  K+
Sbjct: 122 IMLKSSSCNLYGKS 135



 Score = 48.1 bits (113), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 43/68 (63%), Gaps = 2/68 (2%)

Query: 115 KWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLM--QANANIYSDVDPLFYLKYLDIHVG 172
           K  L+ + +  +GL+  H+ SFD+ INVE+++++  ++N  + S +DP F ++Y +I V 
Sbjct: 4   KLALLPALINMRGLLNHHLASFDHLINVELRRILLNESNREVKSSIDPDFSIRYTNIRVC 63

Query: 173 IADKIIPK 180
              +I+ K
Sbjct: 64  QPREIVGK 71


>gi|339898015|ref|XP_003392438.1| putative DNA-directed RNA polymerase polypeptide [Leishmania infantum
            JPCM5]
 gi|321399356|emb|CBZ08599.1| putative DNA-directed RNA polymerase polypeptide [Leishmania infantum
            JPCM5]
          Length = 1132

 Score =  243 bits (619), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 127/267 (47%), Positives = 172/267 (64%), Gaps = 18/267 (6%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            G++PYPHHNQ+ RNT+Q AMGKQA+G +  NQ  R DT++    Y QRP+  +K + +T+
Sbjct: 680  GIIPYPHHNQSARNTFQSAMGKQALGTVALNQYIRADTVLLLGAYPQRPLCRTKAMSLTH 739

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KL AG NA + VMSYSGYDIEDA + NK+SLDRG+GRC+V R  +  L++Y     D 
Sbjct: 740  YEKLGAGINAMVCVMSYSGYDIEDAQVYNKSSLDRGYGRCVVLRKHEVDLEKYAGGEFDV 799

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKE 1092
            IL P   + T K     +AL+ DG+ + G  + +  VLVNK  P        +A  + + 
Sbjct: 800  ILPPEKNSGTGK----FKALNPDGVASKGALVQQYDVLVNKFTP--------VAGGDPRP 847

Query: 1093 VPVSYKGSVPSYLEKVLVSSNSE-DAFL-----IKMLLRQTRRPEIGDKFSSRHGQKGVI 1146
             P+ YK   P+ ++ V++S   + D  L     IK++ R+ R PE GDKFSSRHGQKGV+
Sbjct: 848  APLVYKYPQPAVVDHVIISPPGDYDRSLDVDQKIKVITREVRPPEPGDKFSSRHGQKGVV 907

Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGL 1173
            GLIV   DMPFNE G+CPD+IMNPHG 
Sbjct: 908  GLIVNGVDMPFNERGMCPDMIMNPHGF 934



 Score =  233 bits (595), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 109/196 (55%), Positives = 144/196 (73%), Gaps = 6/196 (3%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSE-DAFL-----IKMLLRQTRRPEIGDKFSSRHGQKG 1236
            +  P+ YK   P+ ++ V++S   + D  L     IK++ R+ R PE GDKFSSRHGQKG
Sbjct: 846  RPAPLVYKYPQPAVVDHVIISPPGDYDRSLDVDQKIKVITREVRPPEPGDKFSSRHGQKG 905

Query: 1237 VIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFG 1296
            V+GLIV   DMPFNE G+CPD+IMNPHG+PSRMTVGKL+EL+  KA  + G+  +GTAFG
Sbjct: 906  VVGLIVNGVDMPFNERGMCPDMIMNPHGFPSRMTVGKLLELVCSKAAALRGSMGDGTAFG 965

Query: 1297 GTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSR 1356
            G     + ++L+  GYNY GKD+FYSGITG+ ++ Y++ GP+YYQ+LKHMV DK+HARS 
Sbjct: 966  GDSADSISQQLLSFGYNYHGKDVFYSGITGDLMQGYVFFGPIYYQRLKHMVTDKMHARST 1025

Query: 1357 GPRVVLTRQPTGRRWK 1372
            GPR +LTRQPT  R +
Sbjct: 1026 GPRSMLTRQPTEGRSR 1041



 Score =  161 bits (407), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 76/150 (50%), Positives = 101/150 (67%), Gaps = 2/150 (1%)

Query: 193 RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVS 252
           + + I N +  AI +G W ++RF M RQG+TQVLSRLSYI+ LGMMTR+ S FEKTRKVS
Sbjct: 419 KMEVIQNGMRMAISSGRWDLKRFNMNRQGITQVLSRLSYIASLGMMTRLASSFEKTRKVS 478

Query: 253 GPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMF 312
           GPRSLQ SQWGM+CP DTPEGE+CGLVKN A ++ +T + ++  +    + +G+E I   
Sbjct: 479 GPRSLQPSQWGMVCPCDTPEGESCGLVKNFATLSQVTLDLNDSYVRAAAHALGVEEIDTV 538

Query: 313 NGEELSSPGVYLVFVNGILAGITCHHKEVC 342
              +      Y VF+NG L GI  +   +C
Sbjct: 539 TPTDFLH--YYTVFLNGTLIGIHRYPNRLC 566



 Score =  126 bits (316), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 65/130 (50%), Positives = 83/130 (63%), Gaps = 15/130 (11%)

Query: 693 DDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRF 752
           +DFL EG IEY+DVNE ND  IAV  + I P  TTHLE+ P +LLGV AGI         
Sbjct: 632 NDFLAEGLIEYVDVNESNDCLIAVYPADIGP-YTTHLEVEPLSLLGVVAGI--------- 681

Query: 753 HSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIR 812
                +PYPHHNQ+ RNT+Q AMGKQA+G +  NQ  R DT++    Y QRP+  +K + 
Sbjct: 682 -----IPYPHHNQSARNTFQSAMGKQALGTVALNQYIRADTVLLLGAYPQRPLCRTKAMS 736

Query: 813 ITNFHKLPAG 822
           +T++ KL AG
Sbjct: 737 LTHYEKLGAG 746



 Score = 76.6 bits (187), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 57/88 (64%), Gaps = 4/88 (4%)

Query: 450 KTPVDDARDFLSSTCIAHIPVINMR----FKMKAMYLAVMIRRMVLALSDPDMLDDRDYY 505
           ++  D A +FL++  + HI    ++    F+ KA Y+  M+R M+ A  D  +LD+RD+Y
Sbjct: 307 RSKADKAAEFLANVLLCHIREAQVQKDWNFRHKAFYVCFMVRGMIEASFDASLLDERDFY 366

Query: 506 GNKRLELAGSLLSLMFEDVFKRFNSELK 533
           GNKR E  G+L++L+FED+ K+FN  +K
Sbjct: 367 GNKRFETTGTLMALLFEDLLKQFNRVVK 394



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 44/74 (59%), Gaps = 4/74 (5%)

Query: 341 VCKP-EIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYT---RGSQRVVRSDLVIGRMP 396
           +C+P EI    +  +  TP ECR+RD+TY   + VD++YT   R    +V  D+ IG +P
Sbjct: 77  ICRPQEIVGKGHIPKLVTPQECRVRDMTYRGDMIVDVQYTSRDRSRAMLVEKDVKIGTIP 136

Query: 397 IMLQSSKCVLRNKT 410
           IML+S  C L  KT
Sbjct: 137 IMLKSKCCNLYRKT 150



 Score = 48.1 bits (113), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 44/70 (62%), Gaps = 2/70 (2%)

Query: 113 RDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLM--QANANIYSDVDPLFYLKYLDIH 170
           R K +++ + +  +G++  HI SFD+ I VE+++++  ++N  I S VDP F ++Y +I 
Sbjct: 17  RKKLEMLPALMAMRGILNHHIASFDHLIEVELQRILLNESNVEIKSTVDPDFVIRYQNIR 76

Query: 171 VGIADKIIPK 180
           +    +I+ K
Sbjct: 77  ICRPQEIVGK 86


>gi|367041247|ref|XP_003651004.1| hypothetical protein THITE_2110960 [Thielavia terrestris NRRL 8126]
 gi|346998265|gb|AEO64668.1| hypothetical protein THITE_2110960 [Thielavia terrestris NRRL 8126]
          Length = 1282

 Score =  243 bits (619), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 152/463 (32%), Positives = 230/463 (49%), Gaps = 97/463 (20%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 811  IIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSMEFLKF 870

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L +R+     K+      ++ 
Sbjct: 871  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYTDCEKRVGINIIEKF 930

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSA-ISMATPEY-- 1090
              P      R     +  LD DGIVAPG ++    +++ K+ P    +A +   + ++  
Sbjct: 931  EKPNRSDTLRLKHSTYDKLDMDGIVAPGVRVSGEDIIIGKTCPINPENAELGQRSTQHVK 990

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++     + +    ++ V++++N +    +K+ +R T+ P+IGDKF+SRHGQKG IG+  
Sbjct: 991  RDASTPLRSTESGIVDSVILTTNQDGMRYVKVRVRTTKIPQIGDKFASRHGQKGTIGVTF 1050

Query: 1151 EQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAF 1210
             QEDMPF   GI PDII+NPH                    ++PS +           A 
Sbjct: 1051 RQEDMPFTCEGITPDIIINPH--------------------AIPSRMTI---------AH 1081

Query: 1211 LIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGI-CPDIIMNPHGYPSRM 1269
            LI+ LL          K S+  G +G        +  PF E  +     ++  HGY SR 
Sbjct: 1082 LIECLL---------SKVSTLKGMEG--------DATPFTEVTVDSVSALLREHGYQSR- 1123

Query: 1270 TVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEAL 1329
                                     F          E++ HG+            TG  L
Sbjct: 1124 ------------------------GF----------EIMYHGH------------TGRKL 1137

Query: 1330 EAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
             A ++ GP YYQ+L+HMV DKIHAR+RGP  ++TRQP   R +
Sbjct: 1138 RAQVFFGPTYYQRLRHMVDDKIHARARGPLQIMTRQPVEGRAR 1180



 Score =  107 bits (266), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 53/150 (35%), Positives = 88/150 (58%), Gaps = 3/150 (2%)

Query: 186 FDIVNHMRQDTITNALTAAIQTGNWTIRRFKMER-QGVTQVLSRLSYISGLGMMTRINSQ 244
           F +   ++  T+TN L  ++ TGNW  ++  M    GV+QVL+R ++ S L  + R N+ 
Sbjct: 492 FSLALGIKHSTLTNGLKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTP 551

Query: 245 FEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNI 304
             +  K++ PR L  + WG++CP++TPEG+ACGLVKNL+LM +++     + +++ M   
Sbjct: 552 IGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGTPAEPIVEFMIAR 611

Query: 305 GIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            +E +  +  E L  P    VFVNG   G+
Sbjct: 612 NMEVLEEY--EPLRYPNATKVFVNGTWVGV 639



 Score = 91.7 bits (226), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/161 (35%), Positives = 74/161 (45%), Gaps = 43/161 (26%)

Query: 695 FLYEGKIEYLDVNEGNDSHIAVS-----------------------ESGIRPGVT----- 726
            L  G IEYLD  E   + I +S                        S IR  +      
Sbjct: 734 LLRSGAIEYLDAEEEETAMICMSPEDLDMFRLSKMGFNVTDTSGQGNSRIRTKINPTTHM 793

Query: 727 -THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGY 785
            TH EI P  LLG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    
Sbjct: 794 YTHCEIHPSMLLGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGFFLT 839

Query: 786 NQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
           N   R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 840 NYSRRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 880



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 2/78 (2%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMV-LALSDPDMLDDRDYYGNKRLELAG 514
           A+D L    + HI         KA +L  M+ +++  AL   D  DDRD++G KRL+LAG
Sbjct: 402 AKDLLQKEMLPHISQTEGCETRKAFFLGYMVHKLLQCALGRRDT-DDRDHFGKKRLDLAG 460

Query: 515 SLLSLMFEDVFKRFNSEL 532
            LL+ +F  + +R   +L
Sbjct: 461 PLLAKLFRGIIRRMTQDL 478


>gi|367030607|ref|XP_003664587.1| hypothetical protein MYCTH_2307570 [Myceliophthora thermophila ATCC
            42464]
 gi|347011857|gb|AEO59342.1| hypothetical protein MYCTH_2307570 [Myceliophthora thermophila ATCC
            42464]
          Length = 1276

 Score =  242 bits (617), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 152/463 (32%), Positives = 231/463 (49%), Gaps = 97/463 (20%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 805  IIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYSKRMDTMANILYYPQKPLATTRSMEFLKF 864

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L +R+     K+      ++ 
Sbjct: 865  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYTDCEKRVGINIVEKF 924

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSA-ISMATPEY-- 1090
              P      R     +  LD DGIVAPG ++    +++ K+ P    +A +   + ++  
Sbjct: 925  EKPNRSDTLRLKHSTYDKLDADGIVAPGVRVSGEDIIIGKTCPINPDNAELGQRSAQHVK 984

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++     + +    +++V+V++N +    +K+ +R T+ P+IGDKF+SRHGQKG IG+  
Sbjct: 985  RDASTPLRSTESGIVDQVVVTTNQDGMRYVKVRVRTTKIPQIGDKFASRHGQKGTIGVTY 1044

Query: 1151 EQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAF 1210
             QEDMPF   GI PD+I+NPH                    ++PS +           A 
Sbjct: 1045 RQEDMPFTCEGITPDLIINPH--------------------AIPSRMTI---------AH 1075

Query: 1211 LIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGI-CPDIIMNPHGYPSRM 1269
            LI+ LL          K S+  G +G        +  PF E  +     ++  HGY SR 
Sbjct: 1076 LIECLL---------SKVSTLKGMEG--------DATPFTEVTVDSVSDLLREHGYQSR- 1117

Query: 1270 TVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEAL 1329
                                     F          E++ HG+            TG  L
Sbjct: 1118 ------------------------GF----------EVLYHGH------------TGRKL 1131

Query: 1330 EAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
             A ++ GP YYQ+L+HMV DKIHAR+RGP  ++TRQP   R +
Sbjct: 1132 RAQVFFGPTYYQRLRHMVDDKIHARARGPLQIMTRQPVEGRAR 1174



 Score =  110 bits (274), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 55/150 (36%), Positives = 88/150 (58%), Gaps = 3/150 (2%)

Query: 186 FDIVNHMRQDTITNALTAAIQTGNWTIRRFKMER-QGVTQVLSRLSYISGLGMMTRINSQ 244
           F +   ++  T+TN L  ++ TGNW  ++  M    GV+QVL+R ++ S L  + R N+ 
Sbjct: 486 FSLALGIKHSTLTNGLKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTP 545

Query: 245 FEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNI 304
             +  K++ PR L  + WG++CP++TPEG+ACGLVKNL+LM +++       +++ M   
Sbjct: 546 IGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGTPADPIVEFMIAR 605

Query: 305 GIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
           G+E +  +  E L  P    VFVNG   GI
Sbjct: 606 GMEVLEEY--EPLQYPNATKVFVNGTWVGI 633



 Score = 92.0 bits (227), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/161 (36%), Positives = 76/161 (47%), Gaps = 43/161 (26%)

Query: 695 FLYEGKIEYLDVNEGNDSHIAVS------------------ESGI-------RPGVTTHL 729
            L  G IEYLD  E     I ++                   SGI       +P  TTH+
Sbjct: 728 LLKSGAIEYLDAEEEETVMICMTPEDLDNFRARKRGEVIEDTSGIGNNRIKTKPNPTTHM 787

Query: 730 ----EIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGY 785
               EI P  LLG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    
Sbjct: 788 YTHCEIHPSMLLGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGFFLT 833

Query: 786 NQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
           N   R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 834 NYSKRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 874



 Score = 50.4 bits (119), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 6/83 (7%)

Query: 453 VDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMV---LALSDPDMLDDRDYYGNKR 509
           V  A++ L    + HI         KA +L  M+ +++   L   DPD   DRD++G KR
Sbjct: 393 VRAAKELLQKEMLPHISQTEGCETRKAFFLGYMVHKLLQCALGRRDPD---DRDHFGKKR 449

Query: 510 LELAGSLLSLMFEDVFKRFNSEL 532
           L+LAG LL+ +F  V +R   +L
Sbjct: 450 LDLAGPLLAKLFRGVIRRMTQDL 472


>gi|13492590|gb|AAK28286.1| DNA-directed RNA polymerase III [Leishmania major]
          Length = 606

 Score =  242 bits (617), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 127/267 (47%), Positives = 171/267 (64%), Gaps = 18/267 (6%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            G++PYPHHNQ+ RNT+Q AMGKQA+G +  NQ  R DT++    Y QRP+  +K + +T+
Sbjct: 154  GIIPYPHHNQSARNTFQSAMGKQALGTVALNQYIRADTVLLLGAYPQRPLCRTKAMSLTH 213

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KL AG NA + VMSYSGYDIEDA + NK+SLDRG+GRC+V R  +  L++Y     D 
Sbjct: 214  YEKLGAGINAMVCVMSYSGYDIEDAQVYNKSSLDRGYGRCVVLRKHEVDLEKYAGGEFDV 273

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKE 1092
            IL P   + T K     +AL+ DG+   G  + +  VLVNK  P        +A  + + 
Sbjct: 274  ILPPEKNSGTGK----FKALNPDGVAGKGALVQQYDVLVNKFTP--------VAGGDPRP 321

Query: 1093 VPVSYKGSVPSYLEKVLVSSNSE-DAFL-----IKMLLRQTRRPEIGDKFSSRHGQKGVI 1146
             P+ YK   P+ ++ V++S   + D  L     IK++ R+ R PE GDKFSSRHGQKGV+
Sbjct: 322  APLVYKYPQPAVVDHVIISPPGDYDRSLDVDQKIKVVTREVRPPEPGDKFSSRHGQKGVV 381

Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGL 1173
            GLIV   DMPFNE G+CPD+IMNPHG 
Sbjct: 382  GLIVNGVDMPFNERGMCPDMIMNPHGF 408



 Score =  233 bits (595), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 118/239 (49%), Positives = 156/239 (65%), Gaps = 22/239 (9%)

Query: 1156 PFNESGICPDIIMNPHGLKGCDRITEYKEV----------------PVSYKGSVPSYLEK 1199
            P   SG      +NP G+ G   + +  +V                P+ YK   P+ ++ 
Sbjct: 277  PEKNSGTGKFKALNPDGVAGKGALVQQYDVLVNKFTPVAGGDPRPAPLVYKYPQPAVVDH 336

Query: 1200 VLVSSNSE-DAFL-----IKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESG 1253
            V++S   + D  L     IK++ R+ R PE GDKFSSRHGQKGV+GLIV   DMPFNE G
Sbjct: 337  VIISPPGDYDRSLDVDQKIKVVTREVRPPEPGDKFSSRHGQKGVVGLIVNGVDMPFNERG 396

Query: 1254 ICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYN 1313
            +CPD+IMNPHG+PSRMTVGKL+EL+  KA  + G+  +GTAFGG     + ++L+  GYN
Sbjct: 397  MCPDMIMNPHGFPSRMTVGKLLELVCSKAAALRGSMGDGTAFGGESADSISQQLLSFGYN 456

Query: 1314 YQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
            Y GKD+FYSGITGE ++ Y++ GP+YYQ+LKHMV DK+HARS GPR +LTRQPT  R +
Sbjct: 457  YHGKDVFYSGITGELMQGYVFFGPIYYQRLKHMVTDKMHARSTGPRSMLTRQPTEGRSR 515



 Score =  123 bits (308), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 64/130 (49%), Positives = 82/130 (63%), Gaps = 15/130 (11%)

Query: 693 DDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRF 752
           +DFL EG  EY+DVNE ND  IAV  + I P  TTHLE+ P +LLGV AGI         
Sbjct: 106 NDFLAEGLTEYVDVNESNDCLIAVYPADIGP-YTTHLEVEPLSLLGVVAGI--------- 155

Query: 753 HSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIR 812
                +PYPHHNQ+ RNT+Q AMGKQA+G +  NQ  R DT++    Y QRP+  +K + 
Sbjct: 156 -----IPYPHHNQSARNTFQSAMGKQALGTVALNQYIRADTVLLLGAYPQRPLCRTKAMS 210

Query: 813 ITNFHKLPAG 822
           +T++ KL AG
Sbjct: 211 LTHYEKLGAG 220


>gi|157868405|ref|XP_001682755.1| putative DNA-directed RNA polymerase polypeptide [Leishmania major
            strain Friedlin]
 gi|68126211|emb|CAJ03500.1| putative DNA-directed RNA polymerase polypeptide [Leishmania major
            strain Friedlin]
          Length = 1132

 Score =  242 bits (617), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 127/267 (47%), Positives = 171/267 (64%), Gaps = 18/267 (6%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            G++PYPHHNQ+ RNT+Q AMGKQA+G +  NQ  R DT++    Y QRP+  +K + +T+
Sbjct: 680  GIIPYPHHNQSARNTFQSAMGKQALGTVALNQYIRADTVLLLGAYPQRPLCRTKAMSLTH 739

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KL AG NA + VMSYSGYDIEDA + NK+SLDRG+GRC+V R  +  L++Y     D 
Sbjct: 740  YEKLGAGINAMVCVMSYSGYDIEDAQVYNKSSLDRGYGRCVVLRKHEVDLEKYAGGEFDV 799

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKE 1092
            IL P   + T K     +AL+ DG+   G  + +  VLVNK  P        +A  + + 
Sbjct: 800  ILPPEKNSGTGK----FKALNPDGVAGKGALVQQYDVLVNKFTP--------VAGGDPRP 847

Query: 1093 VPVSYKGSVPSYLEKVLVSSNSE-DAFL-----IKMLLRQTRRPEIGDKFSSRHGQKGVI 1146
             P+ YK   P+ ++ V++S   + D  L     IK++ R+ R PE GDKFSSRHGQKGV+
Sbjct: 848  APLVYKYPQPAVVDHVIISPPGDYDRSLDVDQKIKVVTREVRPPEPGDKFSSRHGQKGVV 907

Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGL 1173
            GLIV   DMPFNE G+CPD+IMNPHG 
Sbjct: 908  GLIVNGVDMPFNERGMCPDMIMNPHGF 934



 Score =  234 bits (598), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 118/239 (49%), Positives = 156/239 (65%), Gaps = 22/239 (9%)

Query: 1156 PFNESGICPDIIMNPHGLKGCDRITEYKEV----------------PVSYKGSVPSYLEK 1199
            P   SG      +NP G+ G   + +  +V                P+ YK   P+ ++ 
Sbjct: 803  PEKNSGTGKFKALNPDGVAGKGALVQQYDVLVNKFTPVAGGDPRPAPLVYKYPQPAVVDH 862

Query: 1200 VLVSSNSE-DAFL-----IKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESG 1253
            V++S   + D  L     IK++ R+ R PE GDKFSSRHGQKGV+GLIV   DMPFNE G
Sbjct: 863  VIISPPGDYDRSLDVDQKIKVVTREVRPPEPGDKFSSRHGQKGVVGLIVNGVDMPFNERG 922

Query: 1254 ICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYN 1313
            +CPD+IMNPHG+PSRMTVGKL+EL+  KA  + G+  +GTAFGG     + ++L+  GYN
Sbjct: 923  MCPDMIMNPHGFPSRMTVGKLLELVCSKAAALRGSMGDGTAFGGESADSISQQLLSFGYN 982

Query: 1314 YQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
            Y GKD+FYSGITGE ++ Y++ GP+YYQ+LKHMV DK+HARS GPR +LTRQPT  R +
Sbjct: 983  YHGKDVFYSGITGELMQGYVFFGPIYYQRLKHMVTDKMHARSTGPRSMLTRQPTEGRSR 1041



 Score =  159 bits (401), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 77/154 (50%), Positives = 104/154 (67%), Gaps = 10/154 (6%)

Query: 193 RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVS 252
           + + I N +  AI +G W ++RF M RQG+TQVLSRLSYI+ LGMMTR+ S FEKTRKVS
Sbjct: 419 KMEVIQNGMRMAISSGRWDLKRFNMNRQGITQVLSRLSYIASLGMMTRLASSFEKTRKVS 478

Query: 253 GPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMF 312
           GPRSLQ SQWGM+CP DTPEGE+CGLVKN A ++ +T + ++  +    + +G+E I   
Sbjct: 479 GPRSLQPSQWGMVCPCDTPEGESCGLVKNFATLSQVTLDLNDNYVRAAAHALGVEEI--- 535

Query: 313 NGEELSSPGVYL----VFVNGILAGITCHHKEVC 342
              +  +P  +L    VF+NG L GI  +   +C
Sbjct: 536 ---DTVTPTDFLHYCTVFLNGTLIGIHRYPNRLC 566



 Score =  124 bits (310), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 64/130 (49%), Positives = 82/130 (63%), Gaps = 15/130 (11%)

Query: 693 DDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRF 752
           +DFL EG  EY+DVNE ND  IAV  + I P  TTHLE+ P +LLGV AGI         
Sbjct: 632 NDFLAEGLTEYVDVNESNDCLIAVYPADIGP-YTTHLEVEPLSLLGVVAGI--------- 681

Query: 753 HSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIR 812
                +PYPHHNQ+ RNT+Q AMGKQA+G +  NQ  R DT++    Y QRP+  +K + 
Sbjct: 682 -----IPYPHHNQSARNTFQSAMGKQALGTVALNQYIRADTVLLLGAYPQRPLCRTKAMS 736

Query: 813 ITNFHKLPAG 822
           +T++ KL AG
Sbjct: 737 LTHYEKLGAG 746



 Score = 76.6 bits (187), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 57/88 (64%), Gaps = 4/88 (4%)

Query: 450 KTPVDDARDFLSSTCIAHIPVINMR----FKMKAMYLAVMIRRMVLALSDPDMLDDRDYY 505
           ++  D A +FL++  + HI    ++    F+ KA Y+  M+R M+ A  D  +LD+RD+Y
Sbjct: 307 RSKADKAAEFLANVLLCHIREAQVQKDWNFRHKAFYVCFMVRGMIEASFDTSLLDERDFY 366

Query: 506 GNKRLELAGSLLSLMFEDVFKRFNSELK 533
           GNKR E  G+L++L+FED+ K+FN  +K
Sbjct: 367 GNKRFETTGTLMALLFEDLLKQFNRVVK 394



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 44/74 (59%), Gaps = 4/74 (5%)

Query: 341 VCKP-EIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYT---RGSQRVVRSDLVIGRMP 396
           +C+P EI    +  +  TP ECR+RD+TY   + VD++YT   R    +V  D+ IG +P
Sbjct: 77  ICRPQEIVGKGHIPKLVTPQECRIRDMTYRGDMIVDVQYTSRDRSRAMLVEKDVKIGTIP 136

Query: 397 IMLQSSKCVLRNKT 410
           IML+S  C L  KT
Sbjct: 137 IMLKSKCCNLYRKT 150



 Score = 48.1 bits (113), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 44/70 (62%), Gaps = 2/70 (2%)

Query: 113 RDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLM--QANANIYSDVDPLFYLKYLDIH 170
           R K +++ + +  +G++  HI SFD+ I VE+++++  ++N  I S VDP F ++Y +I 
Sbjct: 17  RKKLEMLPALMGMRGILNHHIASFDHLIEVELQRILLNESNVEIKSTVDPDFVIRYQNIR 76

Query: 171 VGIADKIIPK 180
           +    +I+ K
Sbjct: 77  ICRPQEIVGK 86


>gi|218193010|gb|EEC75437.1| hypothetical protein OsI_11967 [Oryza sativa Indica Group]
          Length = 1117

 Score =  241 bits (614), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 118/231 (51%), Positives = 157/231 (67%), Gaps = 4/231 (1%)

Query: 947  RIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGQNATIAVMSYSGYDIEDALIMNKASLD 1006
            R D+L+Y LVYAQRP++ +KTI +  + KL AGQNAT+AVMSYSGYDIEDA++MNK+SLD
Sbjct: 705  RADSLLYLLVYAQRPLLTTKTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLD 764

Query: 1007 RGFGRCLVYRNSKCVLKQYPNQTHDRILGPLLEADTRKPVYRHRALDQDGIVAPGEQICE 1066
            RGFGRC+  +      ++Y     DRI+ P  + D        RALD+DG  APG  I  
Sbjct: 765  RGFGRCIAMKKYTVTKEKYEGGYSDRIVKPQRDKDGALLKQNMRALDEDGFAAPGLIIRN 824

Query: 1067 RQVLVNKSMP--TISVSAISMATPEYKEVPVSYKG--SVPSYLEKVLVSSNSEDAFLIKM 1122
              + VNK  P  T   S   +   +YK+ P  YKG     + +++V++ S++++  +IK 
Sbjct: 825  HDIYVNKQTPRNTKRDSGAHLTDRDYKDSPAVYKGVDGETTVVDRVMLCSDTDEKLIIKC 884

Query: 1123 LLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            ++R TRRPE+GDKFSSRHGQKGV G IV+QED PF+E GICPD+IMNPHG 
Sbjct: 885  IIRHTRRPEVGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGF 935



 Score =  210 bits (535), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 118/290 (40%), Positives = 167/290 (57%), Gaps = 41/290 (14%)

Query: 1085 MATPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKG 1144
            +A  +Y      Y+G    Y ++++     +D      LL+Q  R    D F++      
Sbjct: 771  IAMKKYTVTKEKYEGG---YSDRIVKPQRDKDG----ALLKQNMRALDEDGFAAP----- 818

Query: 1145 VIGLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKG--SVPSYLEKVLV 1202
              GLI+   D+  N+    P       G    DR  +YK+ P  YKG     + +++V++
Sbjct: 819  --GLIIRNHDIYVNKQ--TPRNTKRDSGAHLTDR--DYKDSPAVYKGVDGETTVVDRVML 872

Query: 1203 SSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNP 1262
             S++++  +IK ++R TRRPE+GDKFSSRHGQKGV G IV+QED PF+E GICPD+IMNP
Sbjct: 873  CSDTDEKLIIKCIIRHTRRPEVGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNP 932

Query: 1263 HGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYS 1322
            HG+PS               G   GN          K+ D+   L++HG++Y GKD+ YS
Sbjct: 933  HGFPSAF-------------GEPSGN--------ADKVEDISRTLVKHGFSYNGKDLLYS 971

Query: 1323 GITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
            GI G   +AY++ GP+YYQKLKHMV DK+HAR+ GPRV+LTRQPT  R +
Sbjct: 972  GILGHPCQAYVFMGPIYYQKLKHMVLDKMHARASGPRVLLTRQPTEGRSR 1021



 Score =  127 bits (319), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 118/413 (28%), Positives = 179/413 (43%), Gaps = 97/413 (23%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           ++  L    +AH+PV +  F+ K +Y AVM+RRM+ A+ + D  DD+DY GNKRLEL+G 
Sbjct: 378 SKSILRDVFVAHVPVESGNFRPKCIYTAVMLRRMMDAILNADTFDDKDYVGNKRLELSGQ 437

Query: 516 LLSLMFEDVFKRFNSELKE---------------TNLSGVVNLVS-GWWFELKYGN---- 555
           L+SL+FED+FK  NS   E                +L    N+++ G    +  GN    
Sbjct: 438 LISLLFEDLFKTMNSNAVELMNKTSEKIHSSPLDLSLHIKENIITHGLERAISTGNWDIK 497

Query: 556 --KIYIRSPSRKLLAAGFSGPHSGRVRLMPE--------GPTILLNSCLRSGGKAQHEAL 605
             +++ +  S+ L    +        R+ P+        GP  L  S   S G  +  +L
Sbjct: 498 RFRMHRKGVSQVLSRLSYMASLGYMTRITPQFEKTRKTSGPRALQPSQCYSLG-VEDLSL 556

Query: 606 YNAVQRHATKCCTLNFLFFLGGGGILPSIQRQTTCLLTLILFSLNGDGKRGARNSQQYC- 664
            +  + HA+    + F   + G    P  QR    +  L    + G+      N +Q+C 
Sbjct: 557 LSGEEIHASGSFLVMFNGLILGKHRQP--QRFANAMRKLRRSGIIGEFVSIFVNEKQHCI 614

Query: 665 -DCPDG--------YSSGCQPRPTFLNMHQFL-GFKRFDDFLYEGKIEYLDVNEGNDSHI 714
               DG         +    PR    +M Q   G + FDDFL +G IEYLDVNE N++ I
Sbjct: 615 HIASDGGRVCRPLIIADKGIPRVKEHHMKQLRDGIRSFDDFLRDGLIEYLDVNEENNALI 674

Query: 715 AVSE----SGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNT 770
           A+ E      ++    TH+EI P T+LG+                               
Sbjct: 675 ALYEHEDQDDVQRSSITHIEIEPLTILGLF------------------------------ 704

Query: 771 YQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
                              R D+L+Y LVYAQRP++ +KTI +  + KL AG+
Sbjct: 705 -------------------RADSLLYLLVYAQRPLLTTKTIELVGYDKLGAGQ 738



 Score =  120 bits (302), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 73/215 (33%), Positives = 111/215 (51%), Gaps = 59/215 (27%)

Query: 139 FINVEIKKLMQA--NANIYSDVD-----------PLFYLKYLDIH-------VGIADKII 178
           +  V ++++M A  NA+ + D D            L  L + D+        V + +K  
Sbjct: 403 YTAVMLRRMMDAILNADTFDDKDYVGNKRLELSGQLISLLFEDLFKTMNSNAVELMNKTS 462

Query: 179 PKIKAAQFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMM 238
            KI ++  D+  H++++ IT+ L  AI TGNW I+RF+M R+GV+QVLSRLSY++ LG M
Sbjct: 463 EKIHSSPLDLSLHIKENIITHGLERAISTGNWDIKRFRMHRKGVSQVLSRLSYMASLGYM 522

Query: 239 TRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNML 298
           TRI  QFEKTRK SGPR+LQ SQ                                     
Sbjct: 523 TRITPQFEKTRKTSGPRALQPSQC------------------------------------ 546

Query: 299 KIMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAG 333
              Y++G+E +++ +GEE+ + G +LV  NG++ G
Sbjct: 547 ---YSLGVEDLSLLSGEEIHASGSFLVMFNGLILG 578



 Score = 68.2 bits (165), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/111 (36%), Positives = 59/111 (53%), Gaps = 14/111 (12%)

Query: 305 GIEHIAMFNG--EELSSPGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHECR 362
           GI +I   N   E  ++P ++L   N +  G+         P ++  +    + TPH CR
Sbjct: 126 GIRNIVKANNRIEARNNPSIFLRQYNSVRVGV---------PSVQVQY-IAEKITPHFCR 175

Query: 363 LRDLTYSAPITVDIEYTRGSQRVVRS--DLVIGRMPIMLQSSKCVLRNKTE 411
           L D TYSAP+  DIEYT G Q  ++   + +IG +PIML+S  CVL  K E
Sbjct: 176 LTDRTYSAPVLADIEYTVGKQYELKRKPNFIIGYLPIMLRSHACVLNGKDE 226



 Score = 56.6 bits (135), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 47/75 (62%), Gaps = 9/75 (12%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLK-YLDIHVG 172
           DK+ L+ +FLK +GLVK HIDSF+YFI   I+ +++AN  I +  +P  +L+ Y  + VG
Sbjct: 97  DKFALLPAFLKVRGLVKEHIDSFNYFITKGIRNIVKANNRIEARNNPSIFLRQYNSVRVG 156

Query: 173 --------IADKIIP 179
                   IA+KI P
Sbjct: 157 VPSVQVQYIAEKITP 171


>gi|222625092|gb|EEE59224.1| hypothetical protein OsJ_11195 [Oryza sativa Japonica Group]
          Length = 1115

 Score =  241 bits (614), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 118/231 (51%), Positives = 157/231 (67%), Gaps = 4/231 (1%)

Query: 947  RIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGQNATIAVMSYSGYDIEDALIMNKASLD 1006
            R D+L+Y LVYAQRP++ +KTI +  + KL AGQNAT+AVMSYSGYDIEDA++MNK+SLD
Sbjct: 703  RADSLLYLLVYAQRPLLTTKTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLD 762

Query: 1007 RGFGRCLVYRNSKCVLKQYPNQTHDRILGPLLEADTRKPVYRHRALDQDGIVAPGEQICE 1066
            RGFGRC+  +      ++Y     DRI+ P  + D        RALD+DG  APG  I  
Sbjct: 763  RGFGRCIAMKKYTVTKEKYEGGYSDRIVKPQRDKDGALLKQNMRALDEDGFAAPGLIIRN 822

Query: 1067 RQVLVNKSMP--TISVSAISMATPEYKEVPVSYKG--SVPSYLEKVLVSSNSEDAFLIKM 1122
              + VNK  P  T   S   +   +YK+ P  YKG     + +++V++ S++++  +IK 
Sbjct: 823  HDIYVNKQTPRNTKRDSGAHLTDRDYKDSPAVYKGVDGETTVVDRVMLCSDTDEKLIIKC 882

Query: 1123 LLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            ++R TRRPE+GDKFSSRHGQKGV G IV+QED PF+E GICPD+IMNPHG 
Sbjct: 883  IIRHTRRPEVGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGF 933



 Score =  210 bits (535), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 118/290 (40%), Positives = 167/290 (57%), Gaps = 41/290 (14%)

Query: 1085 MATPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKG 1144
            +A  +Y      Y+G    Y ++++     +D      LL+Q  R    D F++      
Sbjct: 769  IAMKKYTVTKEKYEGG---YSDRIVKPQRDKDG----ALLKQNMRALDEDGFAAP----- 816

Query: 1145 VIGLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKG--SVPSYLEKVLV 1202
              GLI+   D+  N+    P       G    DR  +YK+ P  YKG     + +++V++
Sbjct: 817  --GLIIRNHDIYVNKQ--TPRNTKRDSGAHLTDR--DYKDSPAVYKGVDGETTVVDRVML 870

Query: 1203 SSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNP 1262
             S++++  +IK ++R TRRPE+GDKFSSRHGQKGV G IV+QED PF+E GICPD+IMNP
Sbjct: 871  CSDTDEKLIIKCIIRHTRRPEVGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNP 930

Query: 1263 HGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYS 1322
            HG+PS               G   GN          K+ D+   L++HG++Y GKD+ YS
Sbjct: 931  HGFPSAF-------------GEPSGN--------ADKVEDISRTLVKHGFSYNGKDLLYS 969

Query: 1323 GITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
            GI G   +AY++ GP+YYQKLKHMV DK+HAR+ GPRV+LTRQPT  R +
Sbjct: 970  GILGHPCQAYVFMGPIYYQKLKHMVLDKMHARASGPRVLLTRQPTEGRSR 1019



 Score =  127 bits (318), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 118/413 (28%), Positives = 179/413 (43%), Gaps = 97/413 (23%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           ++  L    +AH+PV +  F+ K +Y AVM+RRM+ A+ + D  DD+DY GNKRLEL+G 
Sbjct: 376 SKSILRDVFVAHVPVESGNFRPKCIYTAVMLRRMMDAILNADTFDDKDYVGNKRLELSGQ 435

Query: 516 LLSLMFEDVFKRFNSELKE---------------TNLSGVVNLVS-GWWFELKYGN---- 555
           L+SL+FED+FK  NS   E                +L    N+++ G    +  GN    
Sbjct: 436 LISLLFEDLFKTMNSNAVELMNKTSEKIHSSPLDLSLHIKENIITHGLERAISTGNWDIK 495

Query: 556 --KIYIRSPSRKLLAAGFSGPHSGRVRLMPE--------GPTILLNSCLRSGGKAQHEAL 605
             +++ +  S+ L    +        R+ P+        GP  L  S   S G  +  +L
Sbjct: 496 RFRMHRKGVSQVLSRLSYMASLGYMTRITPQFEKTRKTSGPRALQPSQCYSLG-VEDLSL 554

Query: 606 YNAVQRHATKCCTLNFLFFLGGGGILPSIQRQTTCLLTLILFSLNGDGKRGARNSQQYC- 664
            +  + HA+    + F   + G    P  QR    +  L    + G+      N +Q+C 
Sbjct: 555 LSGEEIHASGSFLVMFNGLILGKHRQP--QRFANAMRKLRRSGIIGEFVSIFVNEKQHCI 612

Query: 665 -DCPDG--------YSSGCQPRPTFLNMHQFL-GFKRFDDFLYEGKIEYLDVNEGNDSHI 714
               DG         +    PR    +M Q   G + FDDFL +G IEYLDVNE N++ I
Sbjct: 613 HIASDGGRVCRPLIIADKGIPRVKEHHMKQLRDGIRSFDDFLRDGLIEYLDVNEENNALI 672

Query: 715 AVSE----SGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNT 770
           A+ E      ++    TH+EI P T+LG+                               
Sbjct: 673 ALYEHEDQDDVQRSSITHIEIEPLTILGLF------------------------------ 702

Query: 771 YQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
                              R D+L+Y LVYAQRP++ +KTI +  + KL AG+
Sbjct: 703 -------------------RADSLLYLLVYAQRPLLTTKTIELVGYDKLGAGQ 736



 Score =  120 bits (302), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 73/215 (33%), Positives = 111/215 (51%), Gaps = 59/215 (27%)

Query: 139 FINVEIKKLMQA--NANIYSDVD-----------PLFYLKYLDIH-------VGIADKII 178
           +  V ++++M A  NA+ + D D            L  L + D+        V + +K  
Sbjct: 401 YTAVMLRRMMDAILNADTFDDKDYVGNKRLELSGQLISLLFEDLFKTMNSNAVELMNKTS 460

Query: 179 PKIKAAQFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMM 238
            KI ++  D+  H++++ IT+ L  AI TGNW I+RF+M R+GV+QVLSRLSY++ LG M
Sbjct: 461 EKIHSSPLDLSLHIKENIITHGLERAISTGNWDIKRFRMHRKGVSQVLSRLSYMASLGYM 520

Query: 239 TRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNML 298
           TRI  QFEKTRK SGPR+LQ SQ                                     
Sbjct: 521 TRITPQFEKTRKTSGPRALQPSQC------------------------------------ 544

Query: 299 KIMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAG 333
              Y++G+E +++ +GEE+ + G +LV  NG++ G
Sbjct: 545 ---YSLGVEDLSLLSGEEIHASGSFLVMFNGLILG 576



 Score = 68.2 bits (165), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/111 (36%), Positives = 59/111 (53%), Gaps = 14/111 (12%)

Query: 305 GIEHIAMFNG--EELSSPGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHECR 362
           GI +I   N   E  ++P ++L   N +  G+         P ++  +    + TPH CR
Sbjct: 124 GIRNIVKANNRIEARNNPSIFLRQYNSVRVGV---------PSVQVQY-IAEKITPHFCR 173

Query: 363 LRDLTYSAPITVDIEYTRGSQRVVRS--DLVIGRMPIMLQSSKCVLRNKTE 411
           L D TYSAP+  DIEYT G Q  ++   + +IG +PIML+S  CVL  K E
Sbjct: 174 LTDRTYSAPVLADIEYTVGKQYELKRKPNFIIGYLPIMLRSHACVLNGKDE 224



 Score = 56.6 bits (135), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 47/75 (62%), Gaps = 9/75 (12%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLK-YLDIHVG 172
           DK+ L+ +FLK +GLVK HIDSF+YFI   I+ +++AN  I +  +P  +L+ Y  + VG
Sbjct: 95  DKFALLPAFLKVRGLVKEHIDSFNYFITKGIRNIVKANNRIEARNNPSIFLRQYNSVRVG 154

Query: 173 --------IADKIIP 179
                   IA+KI P
Sbjct: 155 VPSVQVQYIAEKITP 169


>gi|269859858|ref|XP_002649653.1| DNA-directed RNA polymerases I, II, and III, subunit 2
            [Enterocytozoon bieneusi H348]
 gi|220067016|gb|EED44485.1| DNA-directed RNA polymerases I, II, and III, subunit 2
            [Enterocytozoon bieneusi H348]
          Length = 1107

 Score =  241 bits (614), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 124/261 (47%), Positives = 165/261 (63%), Gaps = 28/261 (10%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+P+PHHNQ+PRNTYQCAMGKQA+G IG N + R D LM  L Y QRP+  SK + I  
Sbjct: 657  GLIPFPHHNQSPRNTYQCAMGKQAIGHIGTNIKKRFDLLMLQLNYTQRPLSCSKILDINK 716

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            ++K+PAG NA +AVMSYSGYDIEDA+I+NK S++RGF R  VY+  K   +++ N   + 
Sbjct: 717  YNKIPAGINAMVAVMSYSGYDIEDAIIVNKDSIERGFMRVEVYKTIKIEFERFTNGKTEE 776

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKE 1092
            I               +    ++ I+  G  + +  +L+ K  P            + K 
Sbjct: 777  I---------------YIVNGKEQIIEVGTHVMDGDILITKVSPI-----------DKKL 810

Query: 1093 VPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQ 1152
              V YKG  P Y++ +++S   +D  L K+ +R+TR  EIGDKFSSRHGQKGV+GLIV Q
Sbjct: 811  KTVKYKGH-PGYIDTIILSKGDDDKIL-KIKVRETRCVEIGDKFSSRHGQKGVVGLIVPQ 868

Query: 1153 EDMPFNESGICPDIIMNPHGL 1173
             D+PFNE G+CPDIIMNPHG 
Sbjct: 869  VDLPFNEYGVCPDIIMNPHGF 889



 Score =  227 bits (578), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 114/209 (54%), Positives = 141/209 (67%), Gaps = 25/209 (11%)

Query: 1187 VSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQED 1246
            V YKG  P Y++ +++S   +D  L K+ +R+TR  EIGDKFSSRHGQKGV+GLIV Q D
Sbjct: 813  VKYKGH-PGYIDTIILSKGDDDKIL-KIKVRETRCVEIGDKFSSRHGQKGVVGLIVPQVD 870

Query: 1247 MPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAF-GGTKLVDVQ- 1304
            +PFNE G+CPDIIMNPHG+PSRMTVGK++EL+  K   + G Y + T F   T   D++ 
Sbjct: 871  LPFNEYGVCPDIIMNPHGFPSRMTVGKILELIGSKVTCLTGEYTDATPFENNTADNDLKT 930

Query: 1305 ---------------------EELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKL 1343
                                 + LI HGY+Y GKD+F SGITGE  EAYI+ GP++YQ+L
Sbjct: 931  IFNTTNQEPLHKEHRQTELLCQILIDHGYSYSGKDVFTSGITGEQFEAYIFFGPIFYQRL 990

Query: 1344 KHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
            KHMV DKIH RSRGPR VLTRQPT  R K
Sbjct: 991  KHMVADKIHCRSRGPRAVLTRQPTEGRSK 1019



 Score =  184 bits (467), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 100/223 (44%), Positives = 142/223 (63%), Gaps = 9/223 (4%)

Query: 123 LKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPK-I 181
           L ++ L+KP  D  DY  N   +   Q  + ++ D    F     ++   I DKI+ K I
Sbjct: 323 LAKQNLLKP--DDKDYLGNKRFELAGQLLSILFEDTFKKFNF---ELKKSI-DKILSKRI 376

Query: 182 KAAQFDIVN--HMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMT 239
           +  +FD +   +++  +IT  L+ AI +GNW ++RFKMER GVT VL+R SYI+ LGMMT
Sbjct: 377 RTNEFDALTFFNLQTGSITTTLSRAISSGNWNLKRFKMERSGVTHVLTRYSYITALGMMT 436

Query: 240 RINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLK 299
           +INS FEKTRKVSGPRSL  S WGM CP+DTPEGE+CGLVKNLAL+T I+TE+D   +  
Sbjct: 437 KINSHFEKTRKVSGPRSLHPSSWGMFCPADTPEGESCGLVKNLALLTEISTESDSDIIKN 496

Query: 300 IMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAGITCHHKEVC 342
           I+  +G+  +      E  +   ++VF+NG L G+T + + +C
Sbjct: 497 ILQTLGVIKLKFCQESEFYAKNKFMVFINGELFGLTSNIEYLC 539



 Score =  133 bits (335), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 73/162 (45%), Positives = 95/162 (58%), Gaps = 27/162 (16%)

Query: 674 CQP------RPTFLNMHQF----LGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRP 723
           C+P         F   +QF    + +K F+D L EG IEY+DVNE ND  IA+ +S I  
Sbjct: 576 CRPLIIIKKNSNFFTNYQFQCNKIKYKSFNDLLLEGLIEYVDVNEENDCLIALHKSNINN 635

Query: 724 ---GVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAM 780
                 THLEIA +++L + AG              L+P+PHHNQ+PRNTYQCAMGKQA+
Sbjct: 636 LNIENYTHLEIADYSILSLIAG--------------LIPFPHHNQSPRNTYQCAMGKQAI 681

Query: 781 GCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAG 822
           G IG N + R D LM  L Y QRP+  SK + I  ++K+PAG
Sbjct: 682 GHIGTNIKKRFDLLMLQLNYTQRPLSCSKILDINKYNKIPAG 723



 Score = 72.0 bits (175), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/92 (41%), Positives = 57/92 (61%), Gaps = 4/92 (4%)

Query: 448 YKKTPVDDARDFLSSTCIAHIPVINMR----FKMKAMYLAVMIRRMVLALSDPDMLDDRD 503
           + K   DD ++    + +A     N++     K K + L +MIR+++LA  +    DD+D
Sbjct: 276 FIKLKSDDNKEIKVKSILAEKLFPNIKIDDDLKNKGICLCLMIRKLILAKQNLLKPDDKD 335

Query: 504 YYGNKRLELAGSLLSLMFEDVFKRFNSELKET 535
           Y GNKR ELAG LLS++FED FK+FN ELK++
Sbjct: 336 YLGNKRFELAGQLLSILFEDTFKKFNFELKKS 367



 Score = 63.5 bits (153), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 24/49 (48%), Positives = 38/49 (77%)

Query: 358 PHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVL 406
           P ECR+RD+TY+  I VDIEY +  + +++ ++ +G+MPIM++SSKC L
Sbjct: 76  PQECRIRDITYAGNIYVDIEYIKNKEVIIKKNISMGKMPIMIRSSKCHL 124



 Score = 62.0 bits (149), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/60 (51%), Positives = 42/60 (70%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           +R    LV  F  +K LV+ HI+SF+YFI  EIK+++QAN  I SD+D  FYL+YL+I V
Sbjct: 1   MRKDGDLVDLFFADKNLVRQHIESFNYFIEKEIKEIVQANDIIDSDIDRNFYLRYLNIRV 60


>gi|296087814|emb|CBI35070.3| unnamed protein product [Vitis vinifera]
          Length = 461

 Score =  240 bits (613), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 122/235 (51%), Positives = 161/235 (68%), Gaps = 13/235 (5%)

Query: 1147 GLIVEQEDMPFNESG--ICPDIIMNPHGLKGCDRITEYKEVPVSYKG--SVPSYLEKVLV 1202
            G I++  D+  N+    I    +++P GL      + YK    ++KG     S +++V +
Sbjct: 135  GEIIKPNDIYINKESPIITKGPLISPVGLPD----SAYKPSRQTFKGPEGEASVVDRVAL 190

Query: 1203 SSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNP 1262
             S+      IK L+R TRRPE+GDKFSSRHGQKGV G I++QED PF+E GICPD+IMNP
Sbjct: 191  CSDKNSNLCIKFLIRHTRRPEVGDKFSSRHGQKGVCGTIIQQEDFPFSERGICPDLIMNP 250

Query: 1263 HGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFG-----GTKLVDVQEELIRHGYNYQGK 1317
            HG+PSRMTVGK+IELL GKAG+  G +  G+AFG       K+  + + L++HG++Y GK
Sbjct: 251  HGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADKVETISKTLVKHGFSYSGK 310

Query: 1318 DIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
            D  YSGITG  L+AYI+ GP+YYQKLKHMV DK+HAR  GPRV+LTRQPT  R +
Sbjct: 311  DFIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRAR 365



 Score =  237 bits (605), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 118/236 (50%), Positives = 158/236 (66%), Gaps = 9/236 (3%)

Query: 944  QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGQNATIAVMSYSGYDIEDALIMNKA 1003
            Q  R+D+L+Y LVY QRP++ ++TI +  + KL AGQNAT+AVMSYSGYDIEDA++MNK+
Sbjct: 21   QLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKS 80

Query: 1004 SLDRGFGRCLVYRNSKCVLKQYPNQTHDRILGPLLEADTRKPVYRHRALDQDGIVAPGEQ 1063
            SLDRGFGRC+V +    V ++Y N   DRI+ PL      +   R + LD DG+ APGE 
Sbjct: 81   SLDRGFGRCIVMKKFSAVNQRYENNASDRIVRPLKVGHDAE---RMQILDDDGLAAPGEI 137

Query: 1064 ICERQVLVNKSMPTIS----VSAISMATPEYKEVPVSYKG--SVPSYLEKVLVSSNSEDA 1117
            I    + +NK  P I+    +S + +    YK    ++KG     S +++V + S+    
Sbjct: 138  IKPNDIYINKESPIITKGPLISPVGLPDSAYKPSRQTFKGPEGEASVVDRVALCSDKNSN 197

Query: 1118 FLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
              IK L+R TRRPE+GDKFSSRHGQKGV G I++QED PF+E GICPD+IMNPHG 
Sbjct: 198  LCIKFLIRHTRRPEVGDKFSSRHGQKGVCGTIIQQEDFPFSERGICPDLIMNPHGF 253


>gi|378754668|gb|EHY64698.1| RNA polymerase [Nematocida sp. 1 ERTm2]
          Length = 1088

 Score =  240 bits (612), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 116/261 (44%), Positives = 161/261 (61%), Gaps = 31/261 (11%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            G++PYPHHNQ+PRNTYQCAMGKQ +G  G +Q+ R+D   + +V  QRP+  ++ + I  
Sbjct: 661  GVIPYPHHNQSPRNTYQCAMGKQGVGVTGVDQRRRMDGANFFMVNPQRPLAATRGMEIIK 720

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            ++ LPAGQN TIAVMS SGYDIEDAL++NKAS+DRG GR L+++     L+ YP  + D 
Sbjct: 721  YNDLPAGQNLTIAVMSMSGYDIEDALVLNKASIDRGIGRALLFKTHALSLRTYPGGSADT 780

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKE 1092
            I+G                   +GI  PG ++ E    +++             TP   +
Sbjct: 781  IVG-------------------EGIPPPGMKVQEGTTFIDRR------------TPMGSK 809

Query: 1093 VPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQ 1152
                Y+G   + ++K  +    +D   IK +L++ R P IGDKFSSRHGQKGV+GLI+ Q
Sbjct: 810  AGAVYRGLDGASVDKTAIMRTGDDLITIKTVLKEHRIPRIGDKFSSRHGQKGVVGLILPQ 869

Query: 1153 EDMPFNESGICPDIIMNPHGL 1173
            EDMPFNE G+ PD++MNPHG 
Sbjct: 870  EDMPFNELGMSPDLVMNPHGF 890



 Score =  206 bits (523), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 98/188 (52%), Positives = 131/188 (69%), Gaps = 5/188 (2%)

Query: 1189 YKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMP 1248
            Y+G   + ++K  +    +D   IK +L++ R P IGDKFSSRHGQKGV+GLI+ QEDMP
Sbjct: 814  YRGLDGASVDKTAIMRTGDDLITIKTVLKEHRIPRIGDKFSSRHGQKGVVGLILPQEDMP 873

Query: 1249 FNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYK----EGTAFGGTKLVDVQ 1304
            FNE G+ PD++MNPHG+PSRMTVGK++EL+ GK  +  G+ K      TAFGG     + 
Sbjct: 874  FNELGMSPDLVMNPHGFPSRMTVGKILELVTGKC-ISNGSKKLTQYAATAFGGVTAQSIA 932

Query: 1305 EELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTR 1364
            +EL+  GY+  GK+    G +GE +   I+ GPV+YQ+LKHMV DK+HAR+RGPR VLTR
Sbjct: 933  DELVSLGYSETGKETLVCGTSGEQIPVRIFFGPVFYQRLKHMVTDKMHARARGPRAVLTR 992

Query: 1365 QPTGRRWK 1372
            QPT  R +
Sbjct: 993  QPTEGRCR 1000



 Score =  166 bits (419), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 92/217 (42%), Positives = 139/217 (64%), Gaps = 16/217 (7%)

Query: 132 HIDSF----DYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIA-DKIIPK-IKAAQ 185
           ++DS     D+  N  I+   Q  + ++ D+     LK L+  +  A D+++ K  +A +
Sbjct: 339 NVDSLQNDKDFVGNKRIELTGQMLSLLFEDL-----LKRLNTEIKKALDRVLCKRARAQE 393

Query: 186 FDIVNH--MRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
            D ++   M +  IT  L  AI TG+W+++RF+MER G+TQVL+RLS +S +GM +R++S
Sbjct: 394 MDALHFLVMNRGLITTGLLRAISTGSWSLKRFRMERAGITQVLTRLSRLSAIGMCSRVSS 453

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
           QFEKTRKVSGPR+L  SQWG+ CP+DTPEGEACGLVK+LA++T IT   DE  ++  +  
Sbjct: 454 QFEKTRKVSGPRALHCSQWGVFCPADTPEGEACGLVKSLAMLTEITPNEDESGVISALSF 513

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGITCHHKE 340
           +G+E I+  +  +L   G    +VNG++ G TC   E
Sbjct: 514 LGVEDISAISPGDLE--GASKCWVNGVIIG-TCSDPE 547



 Score =  123 bits (308), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 65/151 (43%), Positives = 89/151 (58%), Gaps = 16/151 (10%)

Query: 674 CQPRPTFLNMHQFL-GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIA 732
           C PR T  ++     G+K  +D L EG IEY+D NE  +S IAV  + I    TTHLEI 
Sbjct: 593 CLPRLTRNHIRLLREGYKTVNDLLNEGLIEYIDQNEAKNSLIAVWSTEITDK-TTHLEID 651

Query: 733 PFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRID 792
           P  +LG  AG+              +PYPHHNQ+PRNTYQCAMGKQ +G  G +Q+ R+D
Sbjct: 652 PAAILGYVAGV--------------IPYPHHNQSPRNTYQCAMGKQGVGVTGVDQRRRMD 697

Query: 793 TLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
              + +V  QRP+  ++ + I  ++ LPAG+
Sbjct: 698 GANFFMVNPQRPLAATRGMEIIKYNDLPAGQ 728



 Score = 78.2 bits (191), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/85 (45%), Positives = 58/85 (68%), Gaps = 2/85 (2%)

Query: 453 VDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMV-LALSDPDML-DDRDYYGNKRL 510
           +++AR FL    +AHIP I    + KA YL+VM R ++  A  + D L +D+D+ GNKR+
Sbjct: 296 IEEARLFLCDIILAHIPGIGTDMRRKAEYLSVMARMLIDTADGNVDSLQNDKDFVGNKRI 355

Query: 511 ELAGSLLSLMFEDVFKRFNSELKET 535
           EL G +LSL+FED+ KR N+E+K+ 
Sbjct: 356 ELTGQMLSLLFEDLLKRLNTEIKKA 380



 Score = 64.7 bits (156), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/58 (50%), Positives = 40/58 (68%), Gaps = 1/58 (1%)

Query: 344 PEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQS 401
           P +EE+    R  TP ECR+R++TYS  I VD+EYTRG   +   ++V+G+MPIML S
Sbjct: 79  PSVEENM-VKRYITPEECRIRNMTYSGDIVVDVEYTRGKDIISSRNVVVGKMPIMLGS 135



 Score = 59.7 bits (143), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/50 (54%), Positives = 36/50 (72%)

Query: 122 FLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           FL EKGL + HI+SF++F+  EIK +++ N  I SDVD  FY+KY DI V
Sbjct: 27  FLSEKGLNRHHIESFNHFVEREIKTVLRTNNFIDSDVDSAFYMKYTDIRV 76


>gi|401421150|ref|XP_003875064.1| DNA-directed RNA polymerase polypeptide,putative [Leishmania mexicana
            MHOM/GT/2001/U1103]
 gi|322491300|emb|CBZ26568.1| DNA-directed RNA polymerase polypeptide,putative [Leishmania mexicana
            MHOM/GT/2001/U1103]
          Length = 1132

 Score =  240 bits (612), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 125/267 (46%), Positives = 172/267 (64%), Gaps = 18/267 (6%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            G++PYPHHNQ+ RNT+Q AMGKQA+G +  NQ  R DT++    Y QRP+  +K + +T+
Sbjct: 680  GIIPYPHHNQSARNTFQSAMGKQALGTVALNQYIRADTVLLLGAYPQRPLCRTKAMSLTH 739

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + +L AG NA + VMSYSGYDIEDA + NK+SLDRG+GRC+V R  +  L++Y     D 
Sbjct: 740  YERLGAGINAMVCVMSYSGYDIEDAQVYNKSSLDRGYGRCVVLRKHEVDLEKYAGGEFDV 799

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKE 1092
            IL P   + T K     +AL+ DG+ + G  + +  VLVNK  P        +A  + + 
Sbjct: 800  ILPPEKNSGTGK----FKALNPDGVASKGVLVQQYDVLVNKFTP--------VAGGDPRP 847

Query: 1093 VPVSYKGSVPSYLEKVLVSSNSE-DAFL-----IKMLLRQTRRPEIGDKFSSRHGQKGVI 1146
             P+ YK   P+ ++ V++S   + D  L     +K++ R+ R PE GDKFSSRHGQKGV+
Sbjct: 848  APLVYKYPQPAVVDHVIISPPGDYDRSLDVDQKVKVVTREVRPPEPGDKFSSRHGQKGVV 907

Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGL 1173
            GLIV   DMPFNE G+CPD+IMNPHG 
Sbjct: 908  GLIVNGVDMPFNERGMCPDMIMNPHGF 934



 Score =  233 bits (595), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 109/196 (55%), Positives = 144/196 (73%), Gaps = 6/196 (3%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSE-DAFL-----IKMLLRQTRRPEIGDKFSSRHGQKG 1236
            +  P+ YK   P+ ++ V++S   + D  L     +K++ R+ R PE GDKFSSRHGQKG
Sbjct: 846  RPAPLVYKYPQPAVVDHVIISPPGDYDRSLDVDQKVKVVTREVRPPEPGDKFSSRHGQKG 905

Query: 1237 VIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFG 1296
            V+GLIV   DMPFNE G+CPD+IMNPHG+PSRMTVGKL+EL+  KA  + G+  +GTAFG
Sbjct: 906  VVGLIVNGVDMPFNERGMCPDMIMNPHGFPSRMTVGKLLELVCSKAAALRGSMGDGTAFG 965

Query: 1297 GTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSR 1356
            G     + ++L+  GYNY GKD+FYSGITGE ++ Y++ GP+YYQ+LKHMV DK+HARS 
Sbjct: 966  GDSADSISQQLLSFGYNYHGKDVFYSGITGELMQGYVFFGPIYYQRLKHMVTDKMHARST 1025

Query: 1357 GPRVVLTRQPTGRRWK 1372
            GPR +LTRQPT  R +
Sbjct: 1026 GPRSMLTRQPTEGRSR 1041



 Score =  162 bits (409), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 76/150 (50%), Positives = 102/150 (68%), Gaps = 2/150 (1%)

Query: 193 RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVS 252
           + + I N +  AI +G W ++RF M RQG+TQVLSRLSYI+ LGMMTR+ S FEKTRKVS
Sbjct: 419 KMEVIQNGMRMAISSGRWDLKRFNMNRQGITQVLSRLSYIASLGMMTRLASSFEKTRKVS 478

Query: 253 GPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMF 312
           GPRSLQ SQWGM+CP DTPEGE+CGLVKN A ++ +T + ++  +    +++G+E I   
Sbjct: 479 GPRSLQPSQWGMVCPCDTPEGESCGLVKNFATLSQVTLDLNDNYVRAAAHSLGVEEIDTV 538

Query: 313 NGEELSSPGVYLVFVNGILAGITCHHKEVC 342
              +      Y VF+NG L GI  +   +C
Sbjct: 539 TPTDFLH--YYTVFLNGTLIGIHRYPNRLC 566



 Score =  128 bits (321), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 65/130 (50%), Positives = 84/130 (64%), Gaps = 15/130 (11%)

Query: 693 DDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRF 752
           +DFL EG IEY+DVNE ND  IAV  + IRP  TTHLE+ P +LLGV AGI         
Sbjct: 632 NDFLAEGLIEYVDVNESNDCLIAVYPADIRP-YTTHLEVEPLSLLGVVAGI--------- 681

Query: 753 HSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIR 812
                +PYPHHNQ+ RNT+Q AMGKQA+G +  NQ  R DT++    Y QRP+  +K + 
Sbjct: 682 -----IPYPHHNQSARNTFQSAMGKQALGTVALNQYIRADTVLLLGAYPQRPLCRTKAMS 736

Query: 813 ITNFHKLPAG 822
           +T++ +L AG
Sbjct: 737 LTHYERLGAG 746



 Score = 76.6 bits (187), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 57/88 (64%), Gaps = 4/88 (4%)

Query: 450 KTPVDDARDFLSSTCIAHIPVINMR----FKMKAMYLAVMIRRMVLALSDPDMLDDRDYY 505
           ++  D A +FL++  + HI    ++    F+ KA Y+  M+R M+ A  D  +LD+RD+Y
Sbjct: 307 RSKADKAAEFLANVLLCHIREAQVQKDWNFRHKAFYVCFMVRGMIEASFDASLLDERDFY 366

Query: 506 GNKRLELAGSLLSLMFEDVFKRFNSELK 533
           GNKR E  G+L++L+FED+ K+FN  +K
Sbjct: 367 GNKRFETTGTLMALLFEDLLKQFNRVVK 394



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 44/74 (59%), Gaps = 4/74 (5%)

Query: 341 VCKP-EIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYT---RGSQRVVRSDLVIGRMP 396
           +C+P EI    +  +  TP ECR+RD+TY   + VD++YT   R    +V  D+ IG +P
Sbjct: 77  ICRPQEIVGKGHIPKLVTPQECRIRDMTYRGDMIVDVQYTSRDRSRAMLVEKDVKIGTIP 136

Query: 397 IMLQSSKCVLRNKT 410
           IML+S  C L  KT
Sbjct: 137 IMLKSKCCNLYRKT 150



 Score = 47.8 bits (112), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 44/70 (62%), Gaps = 2/70 (2%)

Query: 113 RDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLM--QANANIYSDVDPLFYLKYLDIH 170
           R K +++ + +  +G++  HI SFD+ I VE+++++  ++N  I S VDP F ++Y +I 
Sbjct: 17  RKKLEMLPALMGMRGILNHHIASFDHLIEVELQRILLNESNVEIKSTVDPDFVIRYQNIR 76

Query: 171 VGIADKIIPK 180
           +    +I+ K
Sbjct: 77  ICRPQEIVGK 86


>gi|147819201|emb|CAN62632.1| hypothetical protein VITISV_031440 [Vitis vinifera]
          Length = 496

 Score =  238 bits (607), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 117/233 (50%), Positives = 157/233 (67%), Gaps = 9/233 (3%)

Query: 947  RIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGQNATIAVMSYSGYDIEDALIMNKASLD 1006
            R+D+L+Y LVY QRP++ ++TI +  + KL AGQNAT+AVMSYSGYDIEDA++MNK+SLD
Sbjct: 196  RMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLD 255

Query: 1007 RGFGRCLVYRNSKCVLKQYPNQTHDRILGPLLEADTRKPVYRHRALDQDGIVAPGEQICE 1066
            RGFGRC+V +    V ++Y N   DRI+ PL      +   R + LD DG+ APGE I  
Sbjct: 256  RGFGRCIVMKKFSAVNQRYENNASDRIVRPLKVGHDAE---RMQILDDDGLAAPGEIIKP 312

Query: 1067 RQVLVNKSMPTIS----VSAISMATPEYKEVPVSYKG--SVPSYLEKVLVSSNSEDAFLI 1120
              + +NK  P I+    +S + +    YK    ++KG     S +++V + S+      I
Sbjct: 313  NDIYINKESPIITKGPLISPVGLPDSAYKPSRQTFKGPEGEASVVDRVALCSDKNSNLCI 372

Query: 1121 KMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            K L+R TRRPE+GDKFSSRHGQKGV G I++QED PF+E GICPD+IMNPHG 
Sbjct: 373  KFLIRHTRRPEVGDKFSSRHGQKGVCGTIIQQEDFPFSERGICPDLIMNPHGF 425



 Score =  110 bits (276), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 57/124 (45%), Positives = 79/124 (63%), Gaps = 8/124 (6%)

Query: 1147 GLIVEQEDMPFNESG--ICPDIIMNPHGLKGCDRITEYKEVPVSYKG--SVPSYLEKVLV 1202
            G I++  D+  N+    I    +++P GL      + YK    ++KG     S +++V +
Sbjct: 307  GEIIKPNDIYINKESPIITKGPLISPVGLPD----SAYKPSRQTFKGPEGEASVVDRVAL 362

Query: 1203 SSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNP 1262
             S+      IK L+R TRRPE+GDKFSSRHGQKGV G I++QED PF+E GICPD+IMNP
Sbjct: 363  CSDKNSNLCIKFLIRHTRRPEVGDKFSSRHGQKGVCGTIIQQEDFPFSERGICPDLIMNP 422

Query: 1263 HGYP 1266
            HG+P
Sbjct: 423  HGFP 426


>gi|71419186|ref|XP_811091.1| DNA-directed RNA polymerase III subunit [Trypanosoma cruzi strain CL
            Brener]
 gi|70875716|gb|EAN89240.1| DNA-directed RNA polymerase III subunit, putative [Trypanosoma cruzi]
          Length = 1130

 Score =  237 bits (604), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 124/267 (46%), Positives = 172/267 (64%), Gaps = 20/267 (7%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            G++P+PHHNQ+ RNT+Q AMGKQA+G I YNQ  R DT++    Y QRP+  +K + +T+
Sbjct: 678  GIIPFPHHNQSARNTFQSAMGKQALGTIAYNQYIRTDTVLMLGAYPQRPLCRTKAMDLTH 737

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KL AG NA + VMSYSGYDIEDA + N+ SLDRG+GRC+V R  +  L++ PN  ++ 
Sbjct: 738  YEKLGAGINAMVCVMSYSGYDIEDAQVYNRCSLDRGYGRCVVLRKHEVDLERLPNGEYEI 797

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKE 1092
            IL P   A       + +AL+ DGI + G  + +  +LVNK  P  S+        E + 
Sbjct: 798  ILPPDSNAG------KCKALNSDGIASKGAIVRQFDILVNKYTPVASL--------EPRP 843

Query: 1093 VPVSYKGSVPSYLEKVLV--SSNSEDAF----LIKMLLRQTRRPEIGDKFSSRHGQKGVI 1146
             P+ YK   P+ ++ V++    +SE +      IK++ R+ R PE GDKFSSRHGQKGV+
Sbjct: 844  NPLVYKYPQPAVVDHVVILPPGDSERSMDVEQKIKVITREVRVPEPGDKFSSRHGQKGVV 903

Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGL 1173
            GLI +  +MPFNE GI PD+IMNPHG 
Sbjct: 904  GLITDGVNMPFNEKGISPDMIMNPHGF 930



 Score =  228 bits (580), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 107/193 (55%), Positives = 143/193 (74%), Gaps = 6/193 (3%)

Query: 1186 PVSYKGSVPSYLEKVLV--SSNSEDAF----LIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1239
            P+ YK   P+ ++ V++    +SE +      IK++ R+ R PE GDKFSSRHGQKGV+G
Sbjct: 845  PLVYKYPQPAVVDHVVILPPGDSERSMDVEQKIKVITREVRVPEPGDKFSSRHGQKGVVG 904

Query: 1240 LIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTK 1299
            LI +  +MPFNE GI PD+IMNPHG+PSRMTVGKL+EL++ K   + G + +GTAFGG  
Sbjct: 905  LITDGVNMPFNEKGISPDMIMNPHGFPSRMTVGKLLELVSSKVSALTGTFGDGTAFGGDN 964

Query: 1300 LVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPR 1359
              D+   L+R+G+NY GKD FYSGITGE ++AY++ GP+YYQ+LKHMV DK+HAR+ GPR
Sbjct: 965  AEDLGMHLLRNGFNYHGKDAFYSGITGEIMQAYVFFGPIYYQRLKHMVTDKMHARATGPR 1024

Query: 1360 VVLTRQPTGRRWK 1372
             +LTRQPT  R +
Sbjct: 1025 SMLTRQPTEGRSR 1037



 Score =  162 bits (410), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 72/149 (48%), Positives = 104/149 (69%), Gaps = 2/149 (1%)

Query: 195 DTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVSGP 254
           + I + +  A+ +G W ++RF M RQG+TQVLSRLSYI+ +GMMTR+ S FEK+RK+SGP
Sbjct: 419 EVIQSGMRVALSSGRWELKRFNMSRQGITQVLSRLSYIACIGMMTRLASSFEKSRKISGP 478

Query: 255 RSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMFNG 314
           RSLQ SQWGM+CP DTPEGE+CGLVKN  +++ +T + D+  +    +N+G+E +   + 
Sbjct: 479 RSLQPSQWGMVCPCDTPEGESCGLVKNFGILSQVTLDMDDSFVRAAAHNLGVEEVDSISS 538

Query: 315 EELSSPGVYLVFVNGILAGITCHHKEVCK 343
            E  +   Y VF+NG L GI  +   +C+
Sbjct: 539 REFLN--YYTVFLNGTLIGIHRYPNRLCR 565



 Score =  124 bits (310), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 67/149 (44%), Positives = 89/149 (59%), Gaps = 16/149 (10%)

Query: 675 QPRPTFLNMHQF-LGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAP 733
           +P  T  ++ Q   G    +DFL EG +E++DVNE ND  IAV    I    TTHLE+ P
Sbjct: 611 KPAVTSAHLDQLSAGQYSINDFLAEGLVEFIDVNEANDCLIAVYPRDIET-YTTHLEVEP 669

Query: 734 FTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDT 793
            +LLGV AGI              +P+PHHNQ+ RNT+Q AMGKQA+G I YNQ  R DT
Sbjct: 670 LSLLGVVAGI--------------IPFPHHNQSARNTFQSAMGKQALGTIAYNQYIRTDT 715

Query: 794 LMYNLVYAQRPMVESKTIRITNFHKLPAG 822
           ++    Y QRP+  +K + +T++ KL AG
Sbjct: 716 VLMLGAYPQRPLCRTKAMDLTHYEKLGAG 744



 Score = 80.9 bits (198), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 59/89 (66%), Gaps = 4/89 (4%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMR----FKMKAMYLAVMIRRMVLALSDPDMLDDRDY 504
           +K+  D+A +FL +  + HI    ++    F+ KA+Y+  M+RRM+ A  D  +LD+RD+
Sbjct: 304 QKSKADNAAEFLGNVLLCHIREGQVQRDWNFRHKALYVCFMVRRMIEASVDSSLLDERDF 363

Query: 505 YGNKRLELAGSLLSLMFEDVFKRFNSELK 533
           YGNKR E  G+L+ L+FED+ K+FN  +K
Sbjct: 364 YGNKRFETTGTLMGLLFEDLLKQFNRVVK 392



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 44/74 (59%), Gaps = 4/74 (5%)

Query: 341 VCKP-EIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYT---RGSQRVVRSDLVIGRMP 396
           VC+P EI       +  +PHECR RDLTY   + VD+EYT   R  +    +D+ IG +P
Sbjct: 75  VCQPREIVGKGQLPKAVSPHECRTRDLTYRGDMIVDVEYTSRDRNKRPCTETDIKIGTIP 134

Query: 397 IMLQSSKCVLRNKT 410
           IML+SS C L  +T
Sbjct: 135 IMLKSSSCNLFGRT 148



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 43/68 (63%), Gaps = 2/68 (2%)

Query: 115 KWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLM--QANANIYSDVDPLFYLKYLDIHVG 172
           K  L+ + +  KGL+  HI SFD+ INVE+K+++  ++N  I S +DP F ++Y +I V 
Sbjct: 17  KLALLPALIGMKGLLNHHIASFDHLINVELKRILLNESNREIKSSIDPDFSIRYTNIRVC 76

Query: 173 IADKIIPK 180
              +I+ K
Sbjct: 77  QPREIVGK 84


>gi|154336907|ref|XP_001564689.1| DNA-directed RNA polymerase polypeptide [Leishmania braziliensis
            MHOM/BR/75/M2904]
 gi|134061724|emb|CAM38755.1| DNA-directed RNA polymerase polypeptide [Leishmania braziliensis
            MHOM/BR/75/M2904]
          Length = 1125

 Score =  236 bits (601), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 124/267 (46%), Positives = 171/267 (64%), Gaps = 18/267 (6%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            G++PYPHHNQ+ RNT+Q AMGKQA+G +  NQ  R DT++    Y QRP+  ++ + +T+
Sbjct: 673  GIIPYPHHNQSARNTFQSAMGKQALGTVALNQYIRADTVLLLGAYPQRPLCRTRAMSLTH 732

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + KL AG NA + VMSYSGYDIEDA + NK+SLDRG+GRC+V R  +  L++Y     D 
Sbjct: 733  YEKLGAGINAMVCVMSYSGYDIEDAQVYNKSSLDRGYGRCVVLRKHEVDLEKYAGGEFDV 792

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKE 1092
            IL P   + + K     +AL+ DG+ + G  + +  VLVNK  P        +A  + + 
Sbjct: 793  ILPPEKNSGSGK----FKALNPDGVASKGAFVQQYDVLVNKFTP--------VAGGDPRP 840

Query: 1093 VPVSYKGSVPSYLEKVLVSSNSE-DAFL-----IKMLLRQTRRPEIGDKFSSRHGQKGVI 1146
             P+ YK    + ++ V++S   + D  L     IK++ R+ R PE GDKFSSRHGQKGV+
Sbjct: 841  APLVYKYPQLAVVDHVIISPPGDYDRSLDVDQKIKVITREVRPPEPGDKFSSRHGQKGVV 900

Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGL 1173
            GLIV   DMPFNE G+CPD+IMNPHG 
Sbjct: 901  GLIVNGVDMPFNERGMCPDMIMNPHGF 927



 Score =  229 bits (584), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 109/196 (55%), Positives = 142/196 (72%), Gaps = 6/196 (3%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSE-DAFL-----IKMLLRQTRRPEIGDKFSSRHGQKG 1236
            +  P+ YK    + ++ V++S   + D  L     IK++ R+ R PE GDKFSSRHGQKG
Sbjct: 839  RPAPLVYKYPQLAVVDHVIISPPGDYDRSLDVDQKIKVITREVRPPEPGDKFSSRHGQKG 898

Query: 1237 VIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFG 1296
            V+GLIV   DMPFNE G+CPD+IMNPHG+PSRMTVGKL+EL+  KA  + G+  +GTAFG
Sbjct: 899  VVGLIVNGVDMPFNERGMCPDMIMNPHGFPSRMTVGKLLELVCSKAAALRGSMGDGTAFG 958

Query: 1297 GTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSR 1356
            G     +  +L+  GYNY GKD+FYSGITGE ++ Y++ GP+YYQ+LKHMV DK+HARS 
Sbjct: 959  GDSADSISRQLLSFGYNYHGKDVFYSGITGELMQGYVFFGPIYYQRLKHMVTDKMHARST 1018

Query: 1357 GPRVVLTRQPTGRRWK 1372
            GPR +LTRQPT  R +
Sbjct: 1019 GPRSMLTRQPTEGRSR 1034



 Score =  160 bits (405), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 76/150 (50%), Positives = 102/150 (68%), Gaps = 2/150 (1%)

Query: 193 RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVS 252
           + + I N +  AI +G W ++RF M RQG+TQVLSRLSYI+ LGMMTR+ S FEKTRKVS
Sbjct: 412 KMEVIQNGMRMAISSGRWDLKRFNMNRQGITQVLSRLSYIACLGMMTRLASSFEKTRKVS 471

Query: 253 GPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMF 312
           GPRSLQ SQWGM+CP DTPEGE+CGLVKN A ++ +T + ++  +    +++G+E I   
Sbjct: 472 GPRSLQPSQWGMVCPCDTPEGESCGLVKNFATLSQVTLDMNDHYVRASAHSLGVEEIDTV 531

Query: 313 NGEELSSPGVYLVFVNGILAGITCHHKEVC 342
              +      Y VF+NG L GI  +   +C
Sbjct: 532 TPTDFLQ--YYSVFLNGTLIGIHRYPNRLC 559



 Score =  125 bits (313), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 64/130 (49%), Positives = 83/130 (63%), Gaps = 15/130 (11%)

Query: 693 DDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRF 752
           +DFL EG IEY+DVNE ND  IAV  + I P  TTHLE+ P +LLGV AGI         
Sbjct: 625 NDFLAEGLIEYVDVNESNDCLIAVYPADIGP-YTTHLEVEPLSLLGVVAGI--------- 674

Query: 753 HSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIR 812
                +PYPHHNQ+ RNT+Q AMGKQA+G +  NQ  R DT++    Y QRP+  ++ + 
Sbjct: 675 -----IPYPHHNQSARNTFQSAMGKQALGTVALNQYIRADTVLLLGAYPQRPLCRTRAMS 729

Query: 813 ITNFHKLPAG 822
           +T++ KL AG
Sbjct: 730 LTHYEKLGAG 739



 Score = 78.2 bits (191), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 57/88 (64%), Gaps = 4/88 (4%)

Query: 450 KTPVDDARDFLSSTCIAHIPVINMR----FKMKAMYLAVMIRRMVLALSDPDMLDDRDYY 505
           ++  D A +FL++  + HI    M+    F+ KA Y+  M+R M+ A  D  +LD+RD+Y
Sbjct: 300 RSKADKAAEFLANVLLCHIRESQMQKDWNFRHKAFYVCFMVRGMIEASFDASLLDERDFY 359

Query: 506 GNKRLELAGSLLSLMFEDVFKRFNSELK 533
           GNKR E  G+L++L+FED+ K+FN  +K
Sbjct: 360 GNKRFETTGTLMALLFEDLLKQFNRVVK 387



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 46/82 (56%), Gaps = 4/82 (4%)

Query: 341 VCKP-EIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYT---RGSQRVVRSDLVIGRMP 396
           VC+P EI    +  +  TP ECR+RD+TY   + VD++YT   R    +V  D+ IG +P
Sbjct: 70  VCRPQEIVGKGHIPKFVTPQECRIRDMTYRGDMIVDVQYTSRDRSRAMLVEKDVKIGTIP 129

Query: 397 IMLQSSKCVLRNKTEYTSSSRR 418
           IML+S  C L  KT     S R
Sbjct: 130 IMLKSKCCNLYRKTREELVSMR 151



 Score = 48.5 bits (114), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 46/76 (60%), Gaps = 2/76 (2%)

Query: 113 RDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLM--QANANIYSDVDPLFYLKYLDIH 170
           R K +++ + +  +G++  HI SFD+ I VE+++++  ++N  I S VDP F ++Y +I 
Sbjct: 10  RKKLEMLPALMAMRGILNHHIASFDHLIEVELQRILLNESNVEIKSVVDPDFLIRYQNIR 69

Query: 171 VGIADKIIPKIKAAQF 186
           V    +I+ K    +F
Sbjct: 70  VCRPQEIVGKGHIPKF 85


>gi|428672278|gb|EKX73192.1| DNA-directed RNA polymerase III subunit, putative [Babesia equi]
          Length = 1363

 Score =  236 bits (601), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 126/325 (38%), Positives = 180/325 (55%), Gaps = 64/325 (19%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+P+P+HNQ+PRNTYQCAMGKQ++G IGYNQ NR DT++Y L Y Q+P+V +K I++ N
Sbjct: 840  GLIPFPNHNQSPRNTYQCAMGKQSIGTIGYNQLNRCDTIIYLLAYTQKPLVTTKAIQLVN 899

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHD- 1031
            F KLPAGQNA +AVMSY GY+IEDA+++N+AS DRGFGRC   R     +++  +   D 
Sbjct: 900  FDKLPAGQNAIVAVMSYQGYEIEDAIVINRASCDRGFGRCFSLRRITQEIEKSTDSDLDL 959

Query: 1032 --------RILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAI 1083
                    R + P                + D ++  GE++  +QV+++KS+ +   S +
Sbjct: 960  SMTYRNVSRCITPFGSKVRSMDGNMRPNTNVDYVINVGERVTNQQVILDKSLFSTVNSQL 1019

Query: 1084 SM----------------------------ATPEYKEV---------------------- 1093
            S+                            + P  K V                      
Sbjct: 1020 SLENLTITRKISTNQLVDPLTVLMDTSSEQSDPNKKNVSFKEGSVSVSSTGRVPLANFGA 1079

Query: 1094 -----PVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
                  V Y  + P+Y+++++ S       L K++LRQ R PE+GDKFSSRHGQKGV+GL
Sbjct: 1080 GSKMKAVKYPFNRPAYIDRIICSETLGGTRLYKIMLRQMRSPEVGDKFSSRHGQKGVVGL 1139

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            I  QE++PF+E G  PD++MNPHG 
Sbjct: 1140 IESQENLPFSEFGWVPDLVMNPHGF 1164



 Score =  228 bits (582), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 104/186 (55%), Positives = 141/186 (75%)

Query: 1187 VSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQED 1246
            V Y  + P+Y+++++ S       L K++LRQ R PE+GDKFSSRHGQKGV+GLI  QE+
Sbjct: 1086 VKYPFNRPAYIDRIICSETLGGTRLYKIMLRQMRSPEVGDKFSSRHGQKGVVGLIESQEN 1145

Query: 1247 MPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEE 1306
            +PF+E G  PD++MNPHG+PSRMTVGK++EL+A KA +++G +K+GT F    L +++  
Sbjct: 1146 LPFSEFGWVPDLVMNPHGFPSRMTVGKMLELVASKAAVLDGLFKDGTPFQENTLPEIERI 1205

Query: 1307 LIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQP 1366
            L   G++  GK+I YSGITGE LE YI++GP+YYQ+LKHMVQDKIHARSRGPR  + RQP
Sbjct: 1206 LESKGFHKAGKEILYSGITGEPLETYIFTGPIYYQRLKHMVQDKIHARSRGPRHNINRQP 1265

Query: 1367 TGRRWK 1372
            T  R +
Sbjct: 1266 TEGRSR 1271



 Score =  173 bits (438), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 80/158 (50%), Positives = 111/158 (70%), Gaps = 1/158 (0%)

Query: 187 DIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFE 246
           DI+ ++  D +T  +  AI TGNW I+RFKMER GV+ VLSRLSYIS +GMM + NSQ E
Sbjct: 570 DIIRNLPTDILTRGMQTAISTGNWNIKRFKMERSGVSHVLSRLSYISCIGMMAKSNSQVE 629

Query: 247 KTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGI 306
           K RKVSGPR+LQ SQ+G++CP DTPEGE+CGLVKNL+LM+H+T++ D   ++ ++Y +G+
Sbjct: 630 KGRKVSGPRALQPSQFGLICPCDTPEGESCGLVKNLSLMSHVTSDGDVDLLISLLYWLGV 689

Query: 307 EHIAMFNGEE-LSSPGVYLVFVNGILAGITCHHKEVCK 343
           E        +    P    V +NGIL G+  + KE+ +
Sbjct: 690 ESFNSLTASDGFDDPSNSTVLLNGILLGVHQNSKELIR 727



 Score =  139 bits (349), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 69/134 (51%), Positives = 94/134 (70%), Gaps = 16/134 (11%)

Query: 694 DFLYE-GKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRF 752
           D+L++ G +E++DVNE N+  I + ES I    TTHLEI+P ++LGV AG          
Sbjct: 792 DYLFQNGILEWIDVNEENNLLIVMRESDITIE-TTHLEISPMSILGVVAG---------- 840

Query: 753 HSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIR 812
               L+P+P+HNQ+PRNTYQCAMGKQ++G IGYNQ NR DT++Y L Y Q+P+V +K I+
Sbjct: 841 ----LIPFPNHNQSPRNTYQCAMGKQSIGTIGYNQLNRCDTIIYLLAYTQKPLVTTKAIQ 896

Query: 813 ITNFHKLPAGKCQI 826
           + NF KLPAG+  I
Sbjct: 897 LVNFDKLPAGQNAI 910



 Score = 76.6 bits (187), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 61/87 (70%), Gaps = 1/87 (1%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMR-FKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGN 507
           +++ ++D  D  S   ++H+P+ + R F  K   L +M RR++  +S  + LDD+D+YGN
Sbjct: 458 RQSILEDTHDLFSRVLLSHVPMRDCRDFSGKIKTLCLMARRVLNVVSGNEPLDDKDHYGN 517

Query: 508 KRLELAGSLLSLMFEDVFKRFNSELKE 534
           KRLELAG L+S++FED++K+F ++ K+
Sbjct: 518 KRLELAGQLISILFEDLYKKFIAQFKK 544



 Score = 72.4 bits (176), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/80 (46%), Positives = 49/80 (61%), Gaps = 1/80 (1%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQ 400
           + KP IEE+       TP  CR+RDLTYSAPI VD++Y RG + V + +L IGR+P+ML+
Sbjct: 147 IGKPCIEENM-VAVMLTPQMCRIRDLTYSAPIYVDVDYVRGPEFVRKENLEIGRLPVMLR 205

Query: 401 SSKCVLRNKTEYTSSSRRAS 420
           S  C L    +  SS    S
Sbjct: 206 SCVCALSKNVQKNSSDNDYS 225



 Score = 63.9 bits (154), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 46/64 (71%), Gaps = 2/64 (3%)

Query: 111 EIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANAN--IYSDVDPLFYLKYLD 168
           EI+DKWK++  +   +G+ + HI+S+D F+  EIK++M A +N  I +DVDP F L+++D
Sbjct: 85  EIKDKWKILPCYFGMRGIARQHINSYDDFVLREIKEIMNAPSNKIIRTDVDPQFMLEFVD 144

Query: 169 IHVG 172
           I +G
Sbjct: 145 IRIG 148


>gi|449015921|dbj|BAM79323.1| RNA polymerase III second largest subunit [Cyanidioschyzon merolae
            strain 10D]
          Length = 1269

 Score =  234 bits (598), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 136/349 (38%), Positives = 187/349 (53%), Gaps = 89/349 (25%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            GL+P+ +HNQ+PRNTYQCAM KQA+G + YNQ  R D L+Y L Y QRP+V+++ +  T+
Sbjct: 720  GLIPFANHNQSPRNTYQCAMSKQAIGAMAYNQHLRTDALLYLLNYPQRPLVQTRAVEFTH 779

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            +H+LP GQNA +AVMSYSGYDIEDAL++N+AS+DRG GRC V R     L+ YPN T D 
Sbjct: 780  YHRLPGGQNAVVAVMSYSGYDIEDALVVNRASVDRGLGRCTVLRKYPVSLRVYPNGTRDT 839

Query: 1033 I-----------------------------------------LGPLLEADTRKPVYRHRA 1051
            I                                           P L A+ R+  Y  +A
Sbjct: 840  IEPAMTTTTTTTTPTVAYTTATEGAPGTTASISVTGVRSTSGQEPELAAERRR-RYLEQA 898

Query: 1052 LDQDGIVAPGEQICERQVLVNKSMPTISV------------------------------- 1080
            LD DGIVAPG  +    +LVNK MPT ++                               
Sbjct: 899  LDSDGIVAPGMPLPPGAILVNKVMPTETLHQPLLRSGPESQAGHSTALTAGAAAGAAAAA 958

Query: 1081 ----------SAISMATPEYKEV----PVSYKG-SVPSYLEKVLVSSNSEDAFLIKMLLR 1125
                      +A S+A+   + +    P  Y+       +++VLV+ +  D  LIK+++R
Sbjct: 959  AAGTTGTQRDAAGSLASSWQRSLRRPAPAVYRAPGGAGVVDQVLVTQDQNDLRLIKVMVR 1018

Query: 1126 QTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFN-ESGICPDIIMNPHGL 1173
            QTRR   GDK++SR GQKGV+GLI  + D+P++  SGI PDI+ NPHG+
Sbjct: 1019 QTRRVVEGDKYASRFGQKGVVGLIPPETDLPWHGNSGIRPDIVFNPHGM 1067



 Score =  199 bits (506), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 97/179 (54%), Positives = 130/179 (72%), Gaps = 5/179 (2%)

Query: 1197 LEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFN-ESGIC 1255
            +++VLV+ +  D  LIK+++RQTRR   GDK++SR GQKGV+GLI  + D+P++  SGI 
Sbjct: 998  VDQVLVTQDQNDLRLIKVMVRQTRRVVEGDKYASRFGQKGVVGLIPPETDLPWHGNSGIR 1057

Query: 1256 PDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEE----LIRHG 1311
            PDI+ NPHG PSRMTVGK+ EL+AGKA  ++G  ++ TAF     +D  E     L+R G
Sbjct: 1058 PDIVFNPHGMPSRMTVGKVFELIAGKAAALDGCLRDATAFVERTGLDSTEACAEVLLRSG 1117

Query: 1312 YNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRR 1370
            Y+Y G+D+ YSGITGE L A+++ GP+YYQ+LKHM  DK   R+RGPR VLTRQPT  R
Sbjct: 1118 YSYAGRDLLYSGITGEPLAAHVFFGPIYYQRLKHMAVDKCFGRARGPRAVLTRQPTEGR 1176



 Score =  190 bits (483), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 105/261 (40%), Positives = 153/261 (58%), Gaps = 49/261 (18%)

Query: 126 KGLVKPHI--DSFDY-----FINVEIKKLMQANANIYSDVD-------------PLFYLK 165
           + LV PHI  D  D+     ++ + I+ ++ A AN  S  D             PL  L 
Sbjct: 321 RTLVLPHIPCDGIDFSDKCLYLALMIRGVLAAKANPESLDDKDYYGNKRLELAGPLLALL 380

Query: 166 YLDIHVGI-------ADKIIPKIKAAQ-FDIVNHMRQDTITNALTAAIQTGNWTIRRFKM 217
           + D+   +       AD+++ K    Q FD+   +R +TI++    A+ +GNW ++RF+M
Sbjct: 381 FEDLFKKLNADIRRHADQVLAKPSRTQDFDVTRCIRSETISHGFEHALSSGNWALKRFRM 440

Query: 218 ERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACG 277
           ERQGVTQVLSRLSY++ +GMM+RI SQFEKTRK+SGPR+LQ SQWGM+CP DTPEGE+CG
Sbjct: 441 ERQGVTQVLSRLSYVAVIGMMSRITSQFEKTRKISGPRALQPSQWGMVCPCDTPEGESCG 500

Query: 278 LVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMFNGEELSSPGVY-------------- 323
           LVKNLAL+  +TTE ++  + +++Y++G + I      +L+S   +              
Sbjct: 501 LVKNLALLADVTTEEEDTAVRRLVYDLGTQDIRALADYDLASSESWRSASGDGLRPAGAP 560

Query: 324 -------LVFVNGILAGITCH 337
                  LVFVNG+L G+  H
Sbjct: 561 DADERPALVFVNGLLLGMHLH 581



 Score =  129 bits (324), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 63/152 (41%), Positives = 91/152 (59%), Gaps = 29/152 (19%)

Query: 687 LGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGI---------------RPGVTTHLEI 731
           LG  R++D L +G +EYLD NE ND+ IA+  + +               +    THLEI
Sbjct: 650 LGLLRWEDLLQQGIVEYLDPNEENDALIALDIAQLQQDDRQQEQEQRLTQKTNRYTHLEI 709

Query: 732 APFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRI 791
           +P ++LG CAG              L+P+ +HNQ+PRNTYQCAM KQA+G + YNQ  R 
Sbjct: 710 SPESILGACAG--------------LIPFANHNQSPRNTYQCAMSKQAIGAMAYNQHLRT 755

Query: 792 DTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
           D L+Y L Y QRP+V+++ +  T++H+LP G+
Sbjct: 756 DALLYLLNYPQRPLVQTRAVEFTHYHRLPGGQ 787



 Score = 93.6 bits (231), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 44/93 (47%), Positives = 67/93 (72%), Gaps = 4/93 (4%)

Query: 441 RQKRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLD 500
           RQ+R    K +  ++AR  L +  + HIP   + F  K +YLA+MIR ++ A ++P+ LD
Sbjct: 305 RQRR----KPSLEEEARALLRTLVLPHIPCDGIDFSDKCLYLALMIRGVLAAKANPESLD 360

Query: 501 DRDYYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
           D+DYYGNKRLELAG LL+L+FED+FK+ N++++
Sbjct: 361 DKDYYGNKRLELAGPLLALLFEDLFKKLNADIR 393



 Score = 70.9 bits (172), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 37/80 (46%), Positives = 49/80 (61%), Gaps = 3/80 (3%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQ 400
           V  P + E  +  R  TPH+CR+ DLTY+API VDIE+    +R   S+L IG +PIML+
Sbjct: 78  VGTPSVYEHVDVQRPLTPHQCRVSDLTYAAPIFVDIEHYHCGRRETVSNLFIGYLPIMLR 137

Query: 401 SSKCVL---RNKTEYTSSSR 417
           SS+C L   R+ TE     R
Sbjct: 138 SSRCCLLQARSDTELAERFR 157



 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 49/73 (67%), Gaps = 3/73 (4%)

Query: 103 TSKLKDSPEIRD---KWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVD 159
            + L+ +  +RD   KWKL+  +L+ + L++ HI SF+YF++ E+KK+++ N  + S+  
Sbjct: 7   ANDLELASPVRDLEYKWKLIPLYLQAQPLIRHHIASFNYFVDTELKKIVKWNGYVTSEAS 66

Query: 160 PLFYLKYLDIHVG 172
             ++LKYLDI VG
Sbjct: 67  SQWFLKYLDIRVG 79


>gi|83415457|gb|ABC17936.1| RNA polymerase II second largest subunit, partial [Monoblepharella
            sp. M15]
          Length = 655

 Score =  233 bits (594), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 110/263 (41%), Positives = 169/263 (64%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DT+   L Y Q+P+V ++ +   +F
Sbjct: 340  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFQLRMDTMSNILYYPQKPLVTTRAMEHLHF 399

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR      K+  +Q  +  
Sbjct: 400  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLYYRAYMDQQKKIGSQQQEIF 459

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              PL +   +     +  LD+DG VAPG ++ +  +L+ K++P    S       A  E 
Sbjct: 460  EKPLRDTTVKMRGASYDTLDEDGFVAPGTRVSDGDILIGKTIPLPKGSEELGARTARHEK 519

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++   + +G+    +++V++S++S+   ++K+ +R TR P++GDKF+SRHGQKG +G+  
Sbjct: 520  RDASTAMRGAETGIIDQVMLSTDSQGQNMVKVRIRSTRIPQMGDKFASRHGQKGTVGITY 579

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GICPDII+NPH +
Sbjct: 580  RQEDMPFTAEGICPDIIINPHAI 602



 Score =  128 bits (322), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 57/136 (41%), Positives = 87/136 (63%)

Query: 1181 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1240
            E ++   + +G+    +++V++S++S+   ++K+ +R TR P++GDKF+SRHGQKG +G+
Sbjct: 518  EKRDASTAMRGAETGIIDQVMLSTDSQGQNMVKVRIRSTRIPQMGDKFASRHGQKGTVGI 577

Query: 1241 IVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKL 1300
               QEDMPF   GICPDII+NPH  PSRMT+G L+E L GK   + G   + T F  T +
Sbjct: 578  TYRQEDMPFTAEGICPDIIINPHAIPSRMTIGHLVECLLGKVSALAGEEGDATPFMDTTV 637

Query: 1301 VDVQEELIRHGYNYQG 1316
              +   L   GY  +G
Sbjct: 638  GAISNALKGLGYQQRG 653



 Score =  117 bits (292), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 61/163 (37%), Positives = 102/163 (62%), Gaps = 9/163 (5%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++ + ++   IT  L  ++ TGNW  +R  M+ R GV+QVLSR +Y S L  + R+NS
Sbjct: 39  EFNMFSAVQHQIITRGLQFSLATGNWGDQRKMMQTRAGVSQVLSRYTYASTLSHLRRLNS 98

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM +I+  +  + +++ ++ 
Sbjct: 99  PIGREGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMAYISVGSPVEPIVEFLHE 158

Query: 304 IGIEHIAMFNGEELSSPGVY---LVFVNGILAGITCHHKEVCK 343
             +E +     EELS P +     VF+NG+  G+  + +E+ +
Sbjct: 159 WTLEDL-----EELSPPDMRDSCKVFLNGVWIGVHRNPEELVR 196



 Score = 93.6 bits (231), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 80/165 (48%), Gaps = 43/165 (26%)

Query: 691 RFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVT------------------------ 726
           ++ + +  G +EY+D +E   + IA+S   +R  +                         
Sbjct: 259 KWGELVSNGLVEYVDTDEEETTMIAMSFDDLRDSMIVAQGEEVAARSDWEVTERLRGGTV 318

Query: 727 -----THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMG 781
                TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG
Sbjct: 319 LTRYWTHAEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMG 364

Query: 782 CIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
               N Q R+DT+   L Y Q+P+V ++ +   +F +LPAG+  I
Sbjct: 365 VFLTNFQLRMDTMSNILYYPQKPLVTTRAMEHLHFRELPAGQNAI 409


>gi|449691657|ref|XP_004212754.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like,
           partial [Hydra magnipapillata]
          Length = 161

 Score =  230 bits (587), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 108/156 (69%), Positives = 128/156 (82%)

Query: 173 IADKIIPKIKAAQFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYI 232
           IAD  IPK +AAQFDIV HMRQD I+N L  AI TGNW I+RF M R GV+QVLSRLSYI
Sbjct: 6   IADVTIPKPRAAQFDIVKHMRQDLISNGLINAISTGNWIIKRFNMHRVGVSQVLSRLSYI 65

Query: 233 SGLGMMTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTEN 292
           S LGMMTR+ SQFEKTRKVSGPRSLQ SQWG+LCPSDTPEGE CGLVKNLALMTH+TT+ 
Sbjct: 66  SALGMMTRVTSQFEKTRKVSGPRSLQPSQWGILCPSDTPEGEGCGLVKNLALMTHVTTDQ 125

Query: 293 DEKNMLKIMYNIGIEHIAMFNGEELSSPGVYLVFVN 328
            +  + +++ N+G+E I + +GEE SSP V+LVF++
Sbjct: 126 VQYPIRRLLCNLGVEDINLLSGEEFSSPLVHLVFLD 161


>gi|120561273|gb|ABM27021.1| RNA polymerase II second largest subunit, partial [Monoblepharis
            macrandra]
          Length = 879

 Score =  228 bits (580), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 109/263 (41%), Positives = 167/263 (63%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DT+   L Y Q+P+V ++ +   +F
Sbjct: 537  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFQLRMDTMSNILYYPQKPLVTTRAMEHLHF 596

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR      K+   Q  +  
Sbjct: 597  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLYYRAYMDSEKKLGIQQAETF 656

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P+ +A  +     +  L+ DG VAPG ++ +  +L+ K++P    S       A  E 
Sbjct: 657  EKPVRDATIKMRGTSYDTLEDDGFVAPGTRVSDGDILIGKTVPLPKGSEELGARTARHEK 716

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            K+   + +G+    +++V++S++S+   ++K+ +R TR P++GDKF+SRHGQKG +G+  
Sbjct: 717  KDASTTMRGAETGIIDQVMLSTDSQGQNMVKVRIRSTRIPQMGDKFASRHGQKGTVGITY 776

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
              EDMPF   GICPDII+NPH +
Sbjct: 777  RHEDMPFTAEGICPDIIINPHAI 799



 Score =  161 bits (407), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 72/165 (43%), Positives = 107/165 (64%)

Query: 1181 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1240
            E K+   + +G+    +++V++S++S+   ++K+ +R TR P++GDKF+SRHGQKG +G+
Sbjct: 715  EKKDASTTMRGAETGIIDQVMLSTDSQGQNMVKVRIRSTRIPQMGDKFASRHGQKGTVGI 774

Query: 1241 IVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKL 1300
                EDMPF   GICPDII+NPH  PSRMT+G L+E L GK   + G   + T F  T +
Sbjct: 775  TYRHEDMPFTAEGICPDIIINPHAIPSRMTIGHLVECLLGKVSALAGEEGDATPFMETTV 834

Query: 1301 VDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKH 1345
              +   L   GY  +G ++ Y+G TG  L+A I+ GP YYQ+LKH
Sbjct: 835  GAISSALKGLGYQQRGYEVLYNGHTGRKLQAQIFLGPTYYQRLKH 879



 Score =  115 bits (288), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 61/163 (37%), Positives = 101/163 (61%), Gaps = 9/163 (5%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++V+ ++   IT  L  ++ TGNW  +R  M+ R GV+QVLSR +Y S L  + R+NS
Sbjct: 236 EFNMVSAVQHQIITRGLQFSLATGNWGDQRKMMQTRAGVSQVLSRYTYASTLSHLRRLNS 295

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM +I+  +  + ++  +  
Sbjct: 296 PIGREGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMAYISVGSPVEPLVDFLQE 355

Query: 304 IGIEHIAMFNGEELSSPGVY---LVFVNGILAGITCHHKEVCK 343
             +E +     EELS+  +     VF+NG+  G+  + +E+ +
Sbjct: 356 WTLEDL-----EELSADDIRDKCKVFLNGVWIGVHRNPEELMR 393



 Score = 95.5 bits (236), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 80/165 (48%), Gaps = 43/165 (26%)

Query: 691 RFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVT------------------------ 726
           ++ D +  G +EY+D +E   + IA+S   +R  +                         
Sbjct: 456 KWGDLVSNGLVEYVDTDEEETTMIAMSFDDLRDSMIAAQGEEVMARSDWEVTERLRGGTV 515

Query: 727 -----THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMG 781
                TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG
Sbjct: 516 LTRYWTHAEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMG 561

Query: 782 CIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
               N Q R+DT+   L Y Q+P+V ++ +   +F +LPAG+  I
Sbjct: 562 VFLTNFQLRMDTMSNILYYPQKPLVTTRAMEHLHFRELPAGQNAI 606



 Score = 53.9 bits (128), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 53/114 (46%), Gaps = 14/114 (12%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A   L    + HI +       KA +L  MI R++L   +    DDRD++G KRL+LAG 
Sbjct: 147 AAQILQKELLPHIGIQARSEGRKAWFLGYMIHRLLLCALERREADDRDHFGKKRLDLAGP 206

Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLSGVVN---LVSGWWFELKYGN 555
           L++ +F  +F+R   ++           +E N+   V    +  G  F L  GN
Sbjct: 207 LMANLFRMLFRRLTQDISRALRKAVESHREFNMVSAVQHQIITRGLQFSLATGN 260


>gi|71663340|ref|XP_818664.1| DNA-directed RNA polymerase III subunit [Trypanosoma cruzi strain CL
            Brener]
 gi|70883928|gb|EAN96813.1| DNA-directed RNA polymerase III subunit, putative [Trypanosoma cruzi]
          Length = 382

 Score =  227 bits (579), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 108/198 (54%), Positives = 146/198 (73%), Gaps = 6/198 (3%)

Query: 1181 EYKEVPVSYKGSVPSYLEKVLV--SSNSEDAF----LIKMLLRQTRRPEIGDKFSSRHGQ 1234
            E +  P+ YK   P+ ++ V++    +SE +      IK++ R+ R PE GDKFSSRHGQ
Sbjct: 92   EPRPNPLVYKYPQPAVVDHVVILPPGDSERSMDVEQKIKVITREVRVPEPGDKFSSRHGQ 151

Query: 1235 KGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTA 1294
            KGV+GLI +  +MPFNE GI PD+IMNPHG+PSRMTVGKL+EL++ K   + G + +GTA
Sbjct: 152  KGVVGLITDGVNMPFNEKGISPDMIMNPHGFPSRMTVGKLLELVSSKVSALTGTFGDGTA 211

Query: 1295 FGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHAR 1354
            FGG    D+   L+R+G+NY GKD+FYSGITGE ++AY++ GP+YYQ+LKHMV DK+HAR
Sbjct: 212  FGGDNAEDLGMHLLRNGFNYHGKDVFYSGITGEIMQAYVFFGPIYYQRLKHMVTDKMHAR 271

Query: 1355 SRGPRVVLTRQPTGRRWK 1372
            + GPR +LTRQPT  R +
Sbjct: 272  ATGPRSMLTRQPTEGRSR 289



 Score =  155 bits (392), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 87/196 (44%), Positives = 121/196 (61%), Gaps = 20/196 (10%)

Query: 984  IAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRILGPLLEADTR 1043
            + VMSYSGYDIEDA + N+ SLDRG+GRC+V R  +  L++ PN  ++ IL P   A   
Sbjct: 1    VCVMSYSGYDIEDAQVYNRCSLDRGYGRCVVLRKHEVDLERLPNGEYEIILPPDSNAG-- 58

Query: 1044 KPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKEVPVSYKGSVPS 1103
                + +AL+ DGI + G  + +  +LVNK  P  S+        E +  P+ YK   P+
Sbjct: 59   ----KCKALNSDGIASKGAIVRQFDILVNKYTPVASL--------EPRPNPLVYKYPQPA 106

Query: 1104 YLEKVLV--SSNSEDAF----LIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPF 1157
             ++ V++    +SE +      IK++ R+ R PE GDKFSSRHGQKGV+GLI +  +MPF
Sbjct: 107  VVDHVVILPPGDSERSMDVEQKIKVITREVRVPEPGDKFSSRHGQKGVVGLITDGVNMPF 166

Query: 1158 NESGICPDIIMNPHGL 1173
            NE GI PD+IMNPHG 
Sbjct: 167  NEKGISPDMIMNPHGF 182


>gi|390960609|ref|YP_006424443.1| DNA-directed RNA polymerase subunit B [Thermococcus sp. CL1]
 gi|390518917|gb|AFL94649.1| DNA-directed RNA polymerase subunit B [Thermococcus sp. CL1]
          Length = 1122

 Score =  226 bits (575), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 116/266 (43%), Positives = 167/266 (62%), Gaps = 8/266 (3%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            LVPYP HN APRNTY   M KQ++G    N + R+DT  + + Y Q P+V S+ ++   F
Sbjct: 655  LVPYPEHNAAPRNTYGAGMAKQSLGFGAANFRIRVDTRGHLMHYPQVPLVNSRIMKAVGF 714

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR- 1032
             + PAGQN  +AV+SYSGY++EDA+IMNKAS++RG  R   +R  +   K+Y     DR 
Sbjct: 715  EERPAGQNFVVAVLSYSGYNMEDAVIMNKASIERGLARSTFFRTYEAEEKRYLGGQTDRF 774

Query: 1033 -ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAIS----MAT 1087
             +  P ++    +  YRH  LD+DGI+ P  ++  + VLV ++ P   +   S    +  
Sbjct: 775  EVPDPTIQGYLGEKYYRH--LDEDGIIFPESKVSGKDVLVGRTSPPRFLEEQSGLGGIIL 832

Query: 1088 PEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
             E +E  V+ + S    ++KV+++   +   L+K+  R  R PE+GDKF+SRHGQKGVIG
Sbjct: 833  QERRETSVTVRPSERGIVDKVIITETGDGTKLVKITTRDLRIPELGDKFASRHGQKGVIG 892

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            LIV QEDMP+ ESGI PD+I+NPHG+
Sbjct: 893  LIVPQEDMPWTESGIVPDLIVNPHGI 918



 Score =  204 bits (518), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 105/207 (50%), Positives = 140/207 (67%), Gaps = 1/207 (0%)

Query: 1164 PDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPE 1223
            P  +    GL G   + E +E  V+ + S    ++KV+++   +   L+K+  R  R PE
Sbjct: 818  PRFLEEQSGLGGII-LQERRETSVTVRPSERGIVDKVIITETGDGTKLVKITTRDLRIPE 876

Query: 1224 IGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAG 1283
            +GDKF+SRHGQKGVIGLIV QEDMP+ ESGI PD+I+NPHG PSRMTVG+LIE + GK  
Sbjct: 877  LGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLIEAIGGKVA 936

Query: 1284 LMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKL 1343
             ++G   +GTAF G     +++EL   G+ + G++I Y GITG  LEA I+ G +YYQ+L
Sbjct: 937  ALKGRRVDGTAFIGEPEEKLRKELEELGFKHSGREIMYDGITGRRLEADIFVGVIYYQRL 996

Query: 1344 KHMVQDKIHARSRGPRVVLTRQPTGRR 1370
             HMV DK+HARSRGP  VLT+QPT  R
Sbjct: 997  HHMVADKMHARSRGPVQVLTKQPTEGR 1023



 Score =  100 bits (250), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 85/156 (54%), Gaps = 9/156 (5%)

Query: 188 IVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEK 247
           + N +R D ++  +  A+ TG W        R GV+Q+L R +Y+S L  + R+ S   +
Sbjct: 393 VRNSIRPDVLSERIEHALATGAWP-----GGRTGVSQLLDRTNYMSTLSHLRRVTSPLSR 447

Query: 248 TRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIE 307
            +     R L G+ WG +CP++TPEG  CGLVKNLALM  ITT   EK + + +  +G+ 
Sbjct: 448 DQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITTGIPEKEVREYLSKLGVV 507

Query: 308 HIAMFNGEELSSPGVYLVFVNGILAGITCHHKEVCK 343
            I     E   +P ++ +++NG+L G     + + K
Sbjct: 508 PIE----ERRPNPSLWRIYLNGVLIGTIEDGESLVK 539



 Score = 83.6 bits (205), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 49/137 (35%), Positives = 70/137 (51%), Gaps = 25/137 (18%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIA-----VSESGIRPGVTTHLEIAPFTLLGVCAGIELL 746
           + D +  G IEYLD  E  ++ +A     V+E        THLE+ P  +LG+ A     
Sbjct: 605 WSDLIKMGIIEYLDAEEEENALVATWPWEVTEE------HTHLELMPAAILGIPAS---- 654

Query: 747 QYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMV 806
                     LVPYP HN APRNTY   M KQ++G    N + R+DT  + + Y Q P+V
Sbjct: 655 ----------LVPYPEHNAAPRNTYGAGMAKQSLGFGAANFRIRVDTRGHLMHYPQVPLV 704

Query: 807 ESKTIRITNFHKLPAGK 823
            S+ ++   F + PAG+
Sbjct: 705 NSRIMKAVGFEERPAGQ 721



 Score = 43.5 bits (101), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 41/78 (52%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A   + +  + H+ V   R + KA YL +M  +++         DD+D+Y NKRL+LAG 
Sbjct: 293 AEHIIDNNLLPHMGVEPERRRAKAYYLGMMALKVLELSLGLRGEDDKDHYANKRLKLAGD 352

Query: 516 LLSLMFEDVFKRFNSELK 533
           LL  +F   F +   +++
Sbjct: 353 LLRDLFRVAFGQLVKDMQ 370



 Score = 41.2 bits (95), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 40/65 (61%), Gaps = 2/65 (3%)

Query: 343 KPEIEESFNYTRQTTPHECRLRDLTYSAPITVD-IEYTRGSQRVVRSDLVIGRMPIMLQS 401
           +PE +E+    +   P + R+R+LTYSAP+ ++ I   +G ++    ++ IG +PIML+S
Sbjct: 73  EPEFQEAQGQRKPLYPMDARIRNLTYSAPLYLELIPVIKGIEQEP-VEVRIGELPIMLKS 131

Query: 402 SKCVL 406
             C L
Sbjct: 132 KACRL 136


>gi|389860840|ref|YP_006363080.1| DNA-directed RNA polymerase subunit B' [Thermogladius cellulolyticus
            1633]
 gi|388525744|gb|AFK50942.1| DNA-directed RNA polymerase subunit B' [Thermogladius cellulolyticus
            1633]
          Length = 1151

 Score =  225 bits (574), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 123/328 (37%), Positives = 193/328 (58%), Gaps = 11/328 (3%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++PYP HNQ+PRN Y+ AMGKQ++G    N Q R+D+  + L Y Q+P+ ++K + +  +
Sbjct: 684  IIPYPEHNQSPRNIYEAAMGKQSLGLYAANFQRRMDSRGHFLHYPQKPLAQTKPLEVIGY 743

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
            ++ PAGQN  +AV++Y+GY+IEDA+IMNK+S++RG GR   +R    V  +YP    D+I
Sbjct: 744  NEKPAGQNMVVAVLTYTGYNIEDAVIMNKSSIERGLGRSTFFRVYSTVEYKYPGGQEDKI 803

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEY--K 1091
              P  +    K    +  LD+DGIVAP   +    VL+ K  P+  +    +   E   +
Sbjct: 804  SVPPSDIRGYKGPRAYEKLDEDGIVAPETYVVGGDVLIGKVSPSRFMITQELTGSEQVKQ 863

Query: 1092 EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVE 1151
            +  V  +      ++ V+++++S+   L+K+ +R  R PE+GDKF+SRHGQKGV+GLI+ 
Sbjct: 864  DTSVVMRHEEKGIVDVVMITTDSDGNKLVKVRVRDLRIPELGDKFASRHGQKGVVGLIIP 923

Query: 1152 QEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSN---SED 1208
            Q DMPF E GI PD+I+NPH       + +  E   S  G V + LE  LV       ED
Sbjct: 924  QYDMPFTEDGITPDLIINPHAFPSRMTVGQLIE---SIAGKVAA-LEGRLVDGTPFFKED 979

Query: 1209 AFLIKMLLRQTRRPEIGDK--FSSRHGQ 1234
               + ++L++   PE G++  +  R G+
Sbjct: 980  PEKLMVVLKRHGYPETGEEAMYDGRTGE 1007



 Score =  196 bits (499), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 100/217 (46%), Positives = 137/217 (63%), Gaps = 9/217 (4%)

Query: 1162 ICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRR 1221
            + P   M    L G +++ +  +  V  +      ++ V+++++S+   L+K+ +R  R 
Sbjct: 844  VSPSRFMITQELTGSEQVKQ--DTSVVMRHEEKGIVDVVMITTDSDGNKLVKVRVRDLRI 901

Query: 1222 PEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGK 1281
            PE+GDKF+SRHGQKGV+GLI+ Q DMPF E GI PD+I+NPH +PSRMTVG+LIE +AGK
Sbjct: 902  PELGDKFASRHGQKGVVGLIIPQYDMPFTEDGITPDLIINPHAFPSRMTVGQLIESIAGK 961

Query: 1282 AGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQ 1341
               +EG   +GT F       +   L RHGY   G++  Y G TGE + A ++ G VYYQ
Sbjct: 962  VAALEGRLVDGTPFFKEDPEKLMVVLKRHGYPETGEEAMYDGRTGELMRAPVFIGIVYYQ 1021

Query: 1342 KLKHMVQDKIHARSRGPRVVLTRQPT-------GRRW 1371
            KL HMV DKIHAR+RGP  +LTRQPT       G RW
Sbjct: 1022 KLHHMVSDKIHARARGPVQILTRQPTEGRARAGGLRW 1058



 Score = 95.9 bits (237), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/139 (35%), Positives = 81/139 (58%), Gaps = 15/139 (10%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G  +F+D +  G IEYLD +E  +++IA++   +     THLEI   ++LG+ A I    
Sbjct: 630 GNLKFEDLVKRGVIEYLDPDEEENAYIALNPDELSIE-HTHLEIWVPSILGIVASI---- 684

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                     +PYP HNQ+PRN Y+ AMGKQ++G    N Q R+D+  + L Y Q+P+ +
Sbjct: 685 ----------IPYPEHNQSPRNIYEAAMGKQSLGLYAANFQRRMDSRGHFLHYPQKPLAQ 734

Query: 808 SKTIRITNFHKLPAGKCQI 826
           +K + +  +++ PAG+  +
Sbjct: 735 TKPLEVIGYNEKPAGQNMV 753



 Score = 87.4 bits (215), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 89/175 (50%), Gaps = 18/175 (10%)

Query: 182 KAAQFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRI 241
           K  + D+   ++ + IT+ ++ A+ TGNW        R GV+Q+L R + +S L  + R+
Sbjct: 399 KYRKVDLKMVIKPNIITDRISHAMATGNWP-----GGRTGVSQILDRTNMLSTLSHLRRV 453

Query: 242 NSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIM 301
            S   + +     R L  + WG +CP +TPEG   GLVKNLALM HI+   DEK + + +
Sbjct: 454 VSPLARAQPHFEARELHFTSWGRMCPFETPEGANIGLVKNLALMAHISVGFDEKEVEQTL 513

Query: 302 YNIGIEHI---------AMFNGEELSSPGVY----LVFVNGILAGITCHHKEVCK 343
             +G++ +         ++  GE  S    Y     V++NG L G+     E+ +
Sbjct: 514 VKLGVKTLPQILDELKESIKRGEAYSGTAEYSSWSKVYLNGRLIGLYPDGGELAR 568



 Score = 42.0 bits (97), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 33/63 (52%)

Query: 340 EVCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIML 399
           ++ KP  +       + TP ECRLR+LTY+AP+T  +            D+ +  +P+ML
Sbjct: 63  KIGKPVWKNIEGVESEVTPMECRLRNLTYAAPVTAKVALVDREGSHKEQDIKLMDLPVML 122

Query: 400 QSS 402
           +S 
Sbjct: 123 KSE 125



 Score = 41.6 bits (96), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 28/40 (70%)

Query: 110 PEIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQ 149
           P I D W L+ +F +EKGLV+ H+DS++ F+   + ++M+
Sbjct: 5   PSIEDLWTLMKAFFEEKGLVRQHLDSYNRFVRELLPEIMR 44


>gi|341581876|ref|YP_004762368.1| DNA-directed RNA polymerase subunit B [Thermococcus sp. 4557]
 gi|340809534|gb|AEK72691.1| DNA-directed RNA polymerase subunit B [Thermococcus sp. 4557]
          Length = 1122

 Score =  225 bits (574), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 115/266 (43%), Positives = 166/266 (62%), Gaps = 8/266 (3%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            LVPYP HN APRNTY   M KQ++G    N + R+DT  + + Y Q P+V S+ ++   F
Sbjct: 655  LVPYPEHNAAPRNTYGAGMAKQSLGFGAANFRIRVDTRGHLMHYPQVPLVNSRIMKAVGF 714

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR- 1032
             + PAGQN  +AV+SY GY++EDA+IMNKAS++RG GR   +R  +   K+Y     DR 
Sbjct: 715  EERPAGQNFVVAVLSYGGYNMEDAIIMNKASIERGLGRSTFFRTYEAEEKRYLGGQTDRF 774

Query: 1033 -ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAIS----MAT 1087
             +  P ++    +  YRH  LD+DGI+ P  ++  + VLV ++ P   +   S    +  
Sbjct: 775  EVPDPTIQGYLGEKYYRH--LDEDGIIFPESKVTGKDVLVGRTSPPRFLEEQSGLGGIIL 832

Query: 1088 PEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
             E +E  V+ + S    ++KV+++   +   L+K+  R  R PE GDKF+SRHGQKGV+G
Sbjct: 833  QERRETSVTVRPSERGIVDKVIITETGDGTKLVKVTTRDLRIPEFGDKFASRHGQKGVVG 892

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            LIV QEDMP+ ESGI PD+I+NPHG+
Sbjct: 893  LIVPQEDMPWTESGIVPDLIVNPHGI 918



 Score =  201 bits (510), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 103/207 (49%), Positives = 138/207 (66%), Gaps = 1/207 (0%)

Query: 1164 PDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPE 1223
            P  +    GL G   + E +E  V+ + S    ++KV+++   +   L+K+  R  R PE
Sbjct: 818  PRFLEEQSGLGGII-LQERRETSVTVRPSERGIVDKVIITETGDGTKLVKVTTRDLRIPE 876

Query: 1224 IGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAG 1283
             GDKF+SRHGQKGV+GLIV QEDMP+ ESGI PD+I+NPHG PSRMTVG+LIE + GK  
Sbjct: 877  FGDKFASRHGQKGVVGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLIEAIGGKVA 936

Query: 1284 LMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKL 1343
             + G   +GTAF G     +++EL   G+ + G+++ Y GITG  LEA I+ G +YYQ+L
Sbjct: 937  ALTGRRVDGTAFIGEPEEKLRKELEELGFKHSGREVMYDGITGRRLEADIFVGVIYYQRL 996

Query: 1344 KHMVQDKIHARSRGPRVVLTRQPTGRR 1370
             HMV DK+HARSRGP  VLT+QPT  R
Sbjct: 997  HHMVADKMHARSRGPVQVLTKQPTEGR 1023



 Score = 98.6 bits (244), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/146 (34%), Positives = 83/146 (56%), Gaps = 9/146 (6%)

Query: 188 IVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEK 247
           + N +R D ++  +  A+ TG W        R GV+Q+L R +Y+S L  + R+ S   +
Sbjct: 393 VRNSIRPDVLSERIEHALATGAWP-----GGRTGVSQLLDRTNYMSTLSHLRRVTSPLSR 447

Query: 248 TRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIE 307
            +     R L G+ WG +CP++TPEG  CGLVKNL+LM+ ITT   E+ + + +  +G+ 
Sbjct: 448 DQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLSLMSQITTGIPEEEVREYLNKLGVV 507

Query: 308 HIAMFNGEELSSPGVYLVFVNGILAG 333
            I     E   SP ++ +++NG+L G
Sbjct: 508 SIE----ERRPSPELWRLYLNGVLIG 529



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/137 (35%), Positives = 72/137 (52%), Gaps = 25/137 (18%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIA-----VSESGIRPGVTTHLEIAPFTLLGVCAGIELL 746
           ++D +  G IEYLD  E  ++++A     V+E        THLE+ P  +LG+ A     
Sbjct: 605 WNDLVKMGIIEYLDAEEEENAYVATWPWEVTEE------HTHLELMPAAILGIPAS---- 654

Query: 747 QYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMV 806
                     LVPYP HN APRNTY   M KQ++G    N + R+DT  + + Y Q P+V
Sbjct: 655 ----------LVPYPEHNAAPRNTYGAGMAKQSLGFGAANFRIRVDTRGHLMHYPQVPLV 704

Query: 807 ESKTIRITNFHKLPAGK 823
            S+ ++   F + PAG+
Sbjct: 705 NSRIMKAVGFEERPAGQ 721



 Score = 44.3 bits (103), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 41/78 (52%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A   + +  + H+ V   R K KA YL +M  +++         DD+D+Y NKRL+LAG 
Sbjct: 293 AEHIIDNNLLPHMGVEPERRKAKAYYLGMMALKVLELSLGLRGEDDKDHYANKRLKLAGD 352

Query: 516 LLSLMFEDVFKRFNSELK 533
           LL  +F   F +   +++
Sbjct: 353 LLRDLFRVAFGQLVKDMQ 370



 Score = 42.4 bits (98), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 40/65 (61%), Gaps = 2/65 (3%)

Query: 343 KPEIEESFNYTRQTTPHECRLRDLTYSAPITVD-IEYTRGSQRVVRSDLVIGRMPIMLQS 401
           +PE +E+    +   P + R+R+LTYSAP+ ++ I   +G ++    ++ IG +PIML+S
Sbjct: 73  EPEFQEAQGQRKPLYPMDARIRNLTYSAPLYLELIPVIKGIEQEA-VEVRIGELPIMLKS 131

Query: 402 SKCVL 406
             C L
Sbjct: 132 KACRL 136


>gi|399950027|gb|AFP65683.1| second-largest subunit of RNA polymerase III [Chroomonas
            mesostigmatica CCMP1168]
          Length = 1096

 Score =  225 bits (573), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 102/186 (54%), Positives = 137/186 (73%)

Query: 1187 VSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQED 1246
            VS+K      +EK+++SSN  + F  K+++RQ R+PE+GDKFSSRHGQKG+ G +  Q+D
Sbjct: 821  VSHKEISGEMVEKIIISSNFRELFFAKLVIRQIRKPEVGDKFSSRHGQKGICGFLCFQKD 880

Query: 1247 MPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEE 1306
            +PF+  G+ PD+IMNPHG+PSRMT+GK+ ELL GK     GN+K+GTAF   K   V   
Sbjct: 881  IPFSNDGVIPDLIMNPHGFPSRMTIGKMFELLNGKNSAYSGNFKDGTAFIEPKKKAVDRN 940

Query: 1307 LIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQP 1366
            L + G+N +G D F+SGI+G+ L+  I+SGPV+YQKLKHMV+DKIHAR+RGPR  LT+QP
Sbjct: 941  LRKLGFNSKGNDFFFSGISGQLLKMEIFSGPVFYQKLKHMVKDKIHARTRGPRSPLTKQP 1000

Query: 1367 TGRRWK 1372
               R K
Sbjct: 1001 IEGRSK 1006



 Score =  210 bits (535), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 103/261 (39%), Positives = 158/261 (60%), Gaps = 21/261 (8%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
             L+P+  HNQ+PRNTYQCAMGKQA+G I YNQ  R DT++  L+Y Q+P+V +KT+  + 
Sbjct: 660  NLIPFSDHNQSPRNTYQCAMGKQAIGSISYNQNQRCDTVLSILLYPQKPLVRTKTVYFSG 719

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
             ++L +G N  + +MS+SGYDIED++IMN++S +RG  R  V R  K ++K + ++    
Sbjct: 720  NNRLTSGINTCVCIMSFSGYDIEDSIIMNRSSTERGLFRSFVMRKHKILVKDFLSEKKS- 778

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKE 1092
                 L    +K +   ++   D I   G+           S     +  I ++   +KE
Sbjct: 779  -----LTTTNKKFLNNKKS---DNIQKVGDLFSNVT-----SNSFYDLGQIILSQVSHKE 825

Query: 1093 VPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQ 1152
            +           +EK+++SSN  + F  K+++RQ R+PE+GDKFSSRHGQKG+ G +  Q
Sbjct: 826  IS-------GEMVEKIIISSNFRELFFAKLVIRQIRKPEVGDKFSSRHGQKGICGFLCFQ 878

Query: 1153 EDMPFNESGICPDIIMNPHGL 1173
            +D+PF+  G+ PD+IMNPHG 
Sbjct: 879  KDIPFSNDGVIPDLIMNPHGF 899



 Score =  153 bits (387), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 72/148 (48%), Positives = 102/148 (68%), Gaps = 1/148 (0%)

Query: 187 DIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFE 246
           +IV  +R D IT     A  TGNW ++ +++E+ G+TQ+LSRLS+IS L M+T+INSQ E
Sbjct: 390 EIVPGIRSDLITTGFEYAFSTGNWMVKPYQLEKNGITQLLSRLSFISTLSMLTKINSQNE 449

Query: 247 KTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGI 306
           K RKV GPRSLQ SQWGM+CP++TPEGE+CGLVK+LA++ HITT    K +L+I + +G 
Sbjct: 450 KIRKVRGPRSLQTSQWGMVCPTETPEGESCGLVKDLAILAHITTAQKSKYLLEICFKLGA 509

Query: 307 EHIAMFNGEELSSPGVYL-VFVNGILAG 333
           E         + +   ++ +F+NG   G
Sbjct: 510 ETFVFSKISSIKTSSDFVKIFLNGRYVG 537



 Score =  109 bits (273), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 52/125 (41%), Positives = 79/125 (63%), Gaps = 15/125 (12%)

Query: 698 EGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGL 757
           +G +E+LDVNE N++ I+     ++   ++HLEI P  +LG+C                L
Sbjct: 617 KGFVEFLDVNEQNNAFISHDLKSLKVR-SSHLEITPEIILGICGN--------------L 661

Query: 758 VPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFH 817
           +P+  HNQ+PRNTYQCAMGKQA+G I YNQ  R DT++  L+Y Q+P+V +KT+  +  +
Sbjct: 662 IPFSDHNQSPRNTYQCAMGKQAIGSISYNQNQRCDTVLSILLYPQKPLVRTKTVYFSGNN 721

Query: 818 KLPAG 822
           +L +G
Sbjct: 722 RLTSG 726



 Score = 70.5 bits (171), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 29/56 (51%), Positives = 44/56 (78%)

Query: 478 KAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
           K + LA+M+RR+ L+L  P ++D +DYYGNKR ELAG L+S++FED+F++ N E +
Sbjct: 318 KIIILAMMVRRIFLSLDQPMIVDSKDYYGNKRFELAGKLVSVLFEDLFRKTNKEFE 373



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 36/55 (65%)

Query: 357 TPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKTE 411
           TPH+ R+RDLTY A + +DI +T   +     D  +G++PIML+S+KC L  K E
Sbjct: 76  TPHQSRIRDLTYCASLFIDISFTIEKRIKYCFDFNLGKIPIMLKSNKCALFGKNE 130


>gi|296109332|ref|YP_003616281.1| DNA-directed RNA polymerase subunit B [methanocaldococcus infernus
            ME]
 gi|295434146|gb|ADG13317.1| DNA-directed RNA polymerase subunit B [Methanocaldococcus infernus
            ME]
          Length = 629

 Score =  225 bits (573), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 114/264 (43%), Positives = 165/264 (62%), Gaps = 3/264 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            G+ PYP HN APR T   AMGKQ++G    N + R+DT  + L Y Q P+V++K   I  
Sbjct: 136  GIAPYPEHNSAPRITMAAAMGKQSLGFPMSNIKWRMDTRGHYLHYPQVPIVKTKHQDILG 195

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F + PAGQN  +A+MSY G+++EDA+I NK+++DRG GR   +R  +   ++YP    D+
Sbjct: 196  FDERPAGQNFVVAIMSYEGFNMEDAIIFNKSAVDRGLGRSTFFRTYEACERRYPGGQMDK 255

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMA---TPE 1089
            I  P  E    KP   ++ L++DGIV+    +   +VLV K+ P   +    +     P+
Sbjct: 256  IEIPSKEVRGNKPDELYKNLEEDGIVSVESFVKSGEVLVGKTSPPRFLEEYDITIQIKPQ 315

Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             ++  V  +     Y++KV+++   E   L+K+ +R  R PE+GDKF+SRHGQKGVIGL+
Sbjct: 316  RRDSSVCVRHGEEGYVDKVMITETKEGNKLVKVKVRDLRVPELGDKFASRHGQKGVIGLL 375

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
            V QEDMPF ESGI PDII+NPHG+
Sbjct: 376  VNQEDMPFTESGIVPDIIINPHGI 399



 Score =  212 bits (539), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 100/178 (56%), Positives = 131/178 (73%)

Query: 1195 SYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGI 1254
             Y++KV+++   E   L+K+ +R  R PE+GDKF+SRHGQKGVIGL+V QEDMPF ESGI
Sbjct: 329  GYVDKVMITETKEGNKLVKVKVRDLRVPELGDKFASRHGQKGVIGLLVNQEDMPFTESGI 388

Query: 1255 CPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNY 1314
             PDII+NPHG PSRMTVG+L+E++ GK G +EG   +GT F G + + ++E L + G+ +
Sbjct: 389  VPDIIINPHGIPSRMTVGQLLEMIGGKVGSLEGRRIDGTIFNGEEEMSLREALEKLGFKH 448

Query: 1315 QGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
             G+++ Y G TG+ LE  IY G +YYQKL HMV  KIHARSRGP  VLTRQPT  R +
Sbjct: 449  HGREVMYDGKTGKKLEVEIYIGVIYYQKLHHMVAGKIHARSRGPVQVLTRQPTEGRAR 506



 Score = 99.4 bits (246), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/132 (43%), Positives = 75/132 (56%), Gaps = 15/132 (11%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKR 751
           FDD + EG IEYLD  E  +++IAVSE  +     THLEI P T+LG+ AGI        
Sbjct: 87  FDDLVKEGVIEYLDAEEEENAYIAVSEEELNEK-HTHLEINPLTILGIGAGI-------- 137

Query: 752 FHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTI 811
                  PYP HN APR T   AMGKQ++G    N + R+DT  + L Y Q P+V++K  
Sbjct: 138 ------APYPEHNSAPRITMAAAMGKQSLGFPMSNIKWRMDTRGHYLHYPQVPIVKTKHQ 191

Query: 812 RITNFHKLPAGK 823
            I  F + PAG+
Sbjct: 192 DILGFDERPAGQ 203


>gi|196009726|ref|XP_002114728.1| DNA directed RNA polymerase II polypeptide B [Trichoplax adhaerens]
 gi|190582790|gb|EDV22862.1| DNA directed RNA polymerase II polypeptide B [Trichoplax adhaerens]
          Length = 1196

 Score =  225 bits (573), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 150/463 (32%), Positives = 222/463 (47%), Gaps = 96/463 (20%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DTL + L Y Q+P+V ++++    F
Sbjct: 698  IIPFPDHNQSPRNTYQSAMGKQAMGVYTTNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRF 757

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG N  +A+ SY+GY+ ED++IMN+ ++DRG  R + YR+ +         + +  
Sbjct: 758  RELPAGINTIVAIASYTGYNQEDSIIMNRGAIDRGLFRSVFYRSYRDQESSGDFNSEEIF 817

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKS--MPTISVSAISMATPEY- 1090
              P  E  +      +  LD DG+VAPG ++    +++ K+  +P     A+      + 
Sbjct: 818  EKPSKETCSGMHNAMYDKLDDDGLVAPGTRVSGGDIVIGKTALLPE-DADALGDTNKRFV 876

Query: 1091 -KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             ++     + S    +++VL++ + E     K+ +R  R P+IGDKF+SRHGQKG  G+ 
Sbjct: 877  KRDASTGLRSSESGIVDQVLLTVSQEGYKFTKVRVRSVRIPQIGDKFASRHGQKGTCGIT 936

Query: 1150 VEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDA 1209
              QEDMPF   GI PDII+NPH                    ++PS +            
Sbjct: 937  YRQEDMPFTCEGITPDIIINPH--------------------AIPSRMTI---------G 967

Query: 1210 FLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRM 1269
             LI+ L           K S+  G+ G        +  PFN++                +
Sbjct: 968  HLIECL---------QGKVSANKGEIG--------DATPFNDT----------------L 994

Query: 1270 TVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEAL 1329
            TV K+  LL+     + GN      F G KL            N Q              
Sbjct: 995  TVQKISSLLSDYGYHLRGNEVLYNGFTGRKL------------NTQ-------------- 1028

Query: 1330 EAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
               ++ GP YYQ+LKHMV DKIHAR+RGP   LTRQP   R +
Sbjct: 1029 ---VFLGPTYYQRLKHMVDDKIHARARGPLQNLTRQPMQGRAR 1068



 Score =  108 bits (269), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 55/150 (36%), Positives = 91/150 (60%), Gaps = 3/150 (2%)

Query: 186 FDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQ 244
           F++   ++   IT+ L  ++ TGNW   ++    R GV+QVL+RL+++S L  + R+NS 
Sbjct: 417 FNLELAIKTKIITDGLRYSLATGNWGDQKKAHQSRAGVSQVLNRLTFVSTLSHLRRLNSP 476

Query: 245 FEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNI 304
             +  K++ PR L  + WGM+CP++TPEG+A GLVKNLALM +I+  +    +L+ +   
Sbjct: 477 IGRDGKLARPRQLHNTHWGMICPAETPEGQAVGLVKNLALMAYISVGSQPSPILEFLEEW 536

Query: 305 GIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            +E++   +   L+S     +FVNG   GI
Sbjct: 537 SMENLEEVSHSALAS--ATKIFVNGCWVGI 564



 Score =  102 bits (253), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 55/136 (40%), Positives = 75/136 (55%), Gaps = 19/136 (13%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVT-----THLEIAPFTLLGVCAGIELL 746
           + D +  G +EY+D  E     IA++   +  GV      TH EI P  +LGVCA I   
Sbjct: 642 WQDLIANGIVEYVDTLEEETVMIAMTPDYLTAGVNYCRTYTHCEIHPSMILGVCASI--- 698

Query: 747 QYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMV 806
                      +P+P HNQ+PRNTYQ AMGKQAMG    N   R+DTL + L Y Q+P+V
Sbjct: 699 -----------IPFPDHNQSPRNTYQSAMGKQAMGVYTTNFHVRMDTLAHVLYYPQKPLV 747

Query: 807 ESKTIRITNFHKLPAG 822
            ++++    F +LPAG
Sbjct: 748 TTRSMEYLRFRELPAG 763



 Score = 43.9 bits (102), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 5/78 (6%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDI--EYTRGSQR---VVRSDLVIGRM 395
           + KP   E          ++ RLR+LTYSAP+ VDI    T+G+            IG++
Sbjct: 95  LSKPTFWEKDGSPTPMMSNQARLRNLTYSAPLYVDITKTITKGNNEPEVKCHPKTFIGKI 154

Query: 396 PIMLQSSKCVLRNKTEYT 413
           PIML+S+ C+L N  ++ 
Sbjct: 155 PIMLRSTYCLLHNMADHA 172



 Score = 43.1 bits (100), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 36/70 (51%)

Query: 441 RQKRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLD 500
           R  R    K+  +  AR+ L    + H+ + +     KA +L  M+ R++L       +D
Sbjct: 326 RGSRSGVTKEKRIKYAREILQKEMLPHVGISDYCETKKAYFLGYMVHRLLLTALGRREVD 385

Query: 501 DRDYYGNKRL 510
           DRD+YGNKRL
Sbjct: 386 DRDHYGNKRL 395


>gi|124028419|ref|YP_001013739.1| DNA-directed RNA polymerase subunit B [Hyperthermus butylicus DSM
            5456]
 gi|123979113|gb|ABM81394.1| DNA-directed RNA polymerase subunit B [Hyperthermus butylicus DSM
            5456]
          Length = 1138

 Score =  224 bits (572), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 107/262 (40%), Positives = 163/262 (62%), Gaps = 3/262 (1%)

Query: 915  VPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFH 974
            +PY  HNQ+PRNTYQ AM KQA+G    N Q R+DT  + L Y ++P+V+++ + +  ++
Sbjct: 669  IPYAEHNQSPRNTYQAAMAKQALGLYAANFQIRVDTRSHLLHYPEKPLVQTRALELMGYN 728

Query: 975  KLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRIL 1034
              PAGQN  +AVMS++GY+IEDA+IMNK+S+DRG  R   +R      ++YP    D+I 
Sbjct: 729  DRPAGQNMVVAVMSFTGYNIEDAVIMNKSSIDRGLARSTFFRLYATEERRYPGGLSDKIE 788

Query: 1035 GPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEYK 1091
             P    +  KP   ++ LD DGI++P  ++   +VL+ K+ P   +         T   +
Sbjct: 789  IPEANVEGSKPPEMYKKLDADGIISPEVEVKGGEVLIGKTSPPRFMEEYREFGTVTVRKR 848

Query: 1092 EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVE 1151
            +  V+ +      ++ V+++ N E   L+K+ +R  R PE+GDKF+SRHGQKGVIG+++ 
Sbjct: 849  DTSVTMRHGEKGVVDTVIITENIEGYKLVKVRVRDQRIPELGDKFASRHGQKGVIGMLIP 908

Query: 1152 QEDMPFNESGICPDIIMNPHGL 1173
            Q DMPF E GI PD+I+NPH  
Sbjct: 909  QYDMPFTEDGITPDLIINPHAF 930



 Score =  189 bits (481), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 91/188 (48%), Positives = 126/188 (67%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++  V+ +      ++ V+++ N E   L+K+ +R  R PE+GDKF+SRHGQKGVIG+++
Sbjct: 848  RDTSVTMRHGEKGVVDTVIITENIEGYKLVKVRVRDQRIPELGDKFASRHGQKGVIGMLI 907

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             Q DMPF E GI PD+I+NPH +PSRMT+G+L E +AGK   +   + +GT F    + +
Sbjct: 908  PQYDMPFTEDGITPDLIINPHAFPSRMTLGQLFETIAGKYAAIYARFVDGTPFAKESIEN 967

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
            ++ EL++ GY   G +I Y G TGE +   I  G VYYQKL HMV DKIHAR+RGP  VL
Sbjct: 968  LRIELLKTGYAPDGTEIMYDGRTGEMIRTPILIGLVYYQKLHHMVADKIHARARGPVQVL 1027

Query: 1363 TRQPTGRR 1370
            TRQPT  R
Sbjct: 1028 TRQPTEGR 1035



 Score =  112 bits (281), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 60/151 (39%), Positives = 92/151 (60%), Gaps = 16/151 (10%)

Query: 192 MRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKV 251
           +R D ITN L  A+ TGNW       +R GV+Q+L R +++S L  + R+ SQ  +T+  
Sbjct: 399 IRSDIITNRLREALATGNWP-----GQRTGVSQILDRTNWLSMLSHLRRVVSQLSRTQPH 453

Query: 252 SGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGI-EHIA 310
              R + G+QWG +CP +TPEG  CGLVKNLALM +++   D+K++ K++Y++G+ + + 
Sbjct: 454 FEARDVHGTQWGRICPFETPEGPNCGLVKNLALMAYVSAGVDDKDVEKLLYSMGVRDAVE 513

Query: 311 MFNGEELSSPGVY--------LVFVNGILAG 333
           +F  EE+   G Y         VF+NG L G
Sbjct: 514 LF--EEVRKQGYYPPEYIKWSKVFLNGRLIG 542



 Score = 97.4 bits (241), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 49/139 (35%), Positives = 77/139 (55%), Gaps = 15/139 (10%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G  RF D +  G +E+LD  E  +++IA++   + P   TH+EI P  + GV A      
Sbjct: 614 GEWRFSDLVRNGIVEFLDAEEEENTYIALNPEDLTPE-HTHMEIWPAGIFGVTAST---- 668

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                     +PY  HNQ+PRNTYQ AM KQA+G    N Q R+DT  + L Y ++P+V+
Sbjct: 669 ----------IPYAEHNQSPRNTYQAAMAKQALGLYAANFQIRVDTRSHLLHYPEKPLVQ 718

Query: 808 SKTIRITNFHKLPAGKCQI 826
           ++ + +  ++  PAG+  +
Sbjct: 719 TRALELMGYNDRPAGQNMV 737



 Score = 47.8 bits (112), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 5/76 (6%)

Query: 340 EVCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIML 399
           E+ +P + ES       TP ECR+RDLTY+API   +            ++++G +P+ML
Sbjct: 66  ELGEPIVIESDGSEHPVTPMECRIRDLTYAAPIKAKVVIVENGIEREAEEIILGFLPVML 125

Query: 400 QS-----SKCVLRNKT 410
           +S     ++C+   K+
Sbjct: 126 RSKADPLARCMYEGKS 141



 Score = 45.4 bits (106), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 41/63 (65%), Gaps = 1/63 (1%)

Query: 110 PEIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDI 169
           P + D+W ++ +F++E GLVK HIDS++ FI  E+K++++    I S     + ++ +D+
Sbjct: 7   PTMDDRWLVMKAFIEEYGLVKQHIDSYNRFIEKELKEIVKEFGTI-STPRREYEVRIVDV 65

Query: 170 HVG 172
            +G
Sbjct: 66  ELG 68


>gi|112382383|gb|ABI17423.1| RNA polymerase II second largest subunit, partial [Sympodiomycopsis
            paphiopedili]
          Length = 746

 Score =  224 bits (572), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 110/263 (41%), Positives = 160/263 (60%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DT+   L Y Q+P+  ++ +   NF
Sbjct: 370  IIPFPDHNQSPRNTYQSAMGKQAMGVYLTNYQMRMDTMANILYYPQKPLATTRAMEHLNF 429

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R L YR      K+      +  
Sbjct: 430  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSLYYRTYTDFEKKVGFTLQEEF 489

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  E   R     +  +D DG+VAPG ++    +++ K+ P    S    +   T   
Sbjct: 490  EKPTREXSIRLKHGTYDKIDADGLVAPGTRVSGEDIIIGKTAPLPPDSEELGLRSKTHTK 549

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VLVS+N E +  +K+ +R TR P+ GDKF+SRHGQKG IG+  
Sbjct: 550  RDVSTPLKSTESGIVDQVLVSTNQEGSKFVKVRVRSTRVPQTGDKFASRHGQKGTIGITY 609

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   G+ PDII+NPH +
Sbjct: 610  RQEDMPFTIEGVTPDIIINPHAI 632



 Score =  189 bits (479), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 89/188 (47%), Positives = 121/188 (64%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VLVS+N E +  +K+ +R TR P+ GDKF+SRHGQKG IG+  
Sbjct: 550  RDVSTPLKSTESGIVDQVLVSTNQEGSKFVKVRVRSTRVPQTGDKFASRHGQKGTIGITY 609

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   G+ PDII+NPH  PSRMT+G L+E L  K   + G   + T F    +  
Sbjct: 610  RQEDMPFTIEGVTPDIIINPHAIPSRMTIGHLVECLLSKVATLSGQEGDATPFTDLTVEA 669

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
            V   L + GY  +G ++ Y+G TG  L+A +Y GP YYQ+LKHMV DKIH+R+RGP  +L
Sbjct: 670  VSSILAKLGYQKRGLEVMYNGHTGRKLQAQVYLGPTYYQRLKHMVDDKIHSRARGPVQIL 729

Query: 1363 TRQPTGRR 1370
            TRQP   R
Sbjct: 730  TRQPVEGR 737



 Score =  114 bits (284), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 55/153 (35%), Positives = 93/153 (60%), Gaps = 4/153 (2%)

Query: 182 KAAQFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTR 240
           ++ +F +   ++  TITN L  ++ TGNW   ++F   + GV+QVL+R ++ S L  + R
Sbjct: 40  ESREFHLTTAVKSSTITNGLRYSLATGNWGDQKKFMQAKAGVSQVLNRYTFASTLSHLRR 99

Query: 241 INSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKI 300
            N+   +  K++ PR L  + WGM+CP++TPEG+ACGLVKNL+LM+ I+  +    +   
Sbjct: 100 CNTPIGRDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSLISVGSPSAPLHHF 159

Query: 301 MYNIGIEHIAMFNGEELSSPGVYLVFVNGILAG 333
           +   G++++   +   +SS     VFVNG+ AG
Sbjct: 160 LDEFGLDNLVDMS---ISSAKATKVFVNGVWAG 189



 Score = 95.9 bits (237), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/171 (33%), Positives = 76/171 (44%), Gaps = 49/171 (28%)

Query: 691 RFDDFLYEGKIEYLDVNEGNDSHIAVSESGI----------------------------- 721
           R+   + EG IEYLD +E     I +S   +                             
Sbjct: 283 RWSQLVAEGVIEYLDADEEETVMICMSPQDLAKSRKLNRHGILTGETAGLDGLPDPSARL 342

Query: 722 ------RPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAM 775
                  P   TH EI P  +LGVCA I              +P+P HNQ+PRNTYQ AM
Sbjct: 343 VSARTYEPSTWTHCEIHPAMILGVCASI--------------IPFPDHNQSPRNTYQSAM 388

Query: 776 GKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
           GKQAMG    N Q R+DT+   L Y Q+P+  ++ +   NF +LPAG+  I
Sbjct: 389 GKQAMGVYLTNYQMRMDTMANILYYPQKPLATTRAMEHLNFRELPAGQNAI 439


>gi|312136876|ref|YP_004004213.1| DNA-directed RNA polymerase, subunit b' [Methanothermus fervidus DSM
            2088]
 gi|311224595|gb|ADP77451.1| DNA-directed RNA polymerase, subunit B' [Methanothermus fervidus DSM
            2088]
          Length = 604

 Score =  224 bits (570), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 107/266 (40%), Positives = 164/266 (61%), Gaps = 3/266 (1%)

Query: 911  SPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRI 970
            S GL+PY +HN +PRNT + AM KQA+G    N + R DT  + L Y Q P+V ++ + I
Sbjct: 135  SAGLIPYANHNSSPRNTMEAAMAKQALGIYASNYKYRTDTRSHLLFYPQIPLVRTRIMDI 194

Query: 971  TNFHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTH 1030
              + K+PAGQN  +AV+SY GY++EDALI+NK++++RG  R   +R  +   ++YP    
Sbjct: 195  NEYDKMPAGQNFVVAVLSYEGYNMEDALIINKSAVERGLARSFFFRTYESSERRYPGGQE 254

Query: 1031 DRILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTI---SVSAISMAT 1087
            D+   P       +    +R LD+DGI+ PG ++ +  VL+ K+ P      +      +
Sbjct: 255  DKFEIPKKGIRGYRSEDSYRHLDEDGIINPGTEVSQGDVLIGKTSPPRFLGEIDEFGTVS 314

Query: 1088 PEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
               +E  V+ +      ++ V+++ +SE   L+K+ +R  R PE+GDKF+SRHGQKGVIG
Sbjct: 315  DRRRESSVTVRPGEKGVVDTVILTESSEGNKLVKVKVRDGRVPELGDKFASRHGQKGVIG 374

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            LIV +EDMPF E G+ PD+I+NPH +
Sbjct: 375  LIVPEEDMPFTEDGLVPDLIINPHAI 400



 Score =  197 bits (500), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 93/190 (48%), Positives = 133/190 (70%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            +E  V+ +      ++ V+++ +SE   L+K+ +R  R PE+GDKF+SRHGQKGVIGLIV
Sbjct: 318  RESSVTVRPGEKGVVDTVILTESSEGNKLVKVKVRDGRVPELGDKFASRHGQKGVIGLIV 377

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             +EDMPF E G+ PD+I+NPH  PSRM+VG+++E+L GK    EG   +GT F G K  +
Sbjct: 378  PEEDMPFTEDGLVPDLIINPHAIPSRMSVGQMLEMLLGKGACFEGRRIDGTPFTGEKEEE 437

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
            ++  L ++G+  +G +  Y+G+TGE +EA I+ G VYYQKL HM  DK++ARSRGP  +L
Sbjct: 438  IKHVLKKYGFESEGLEAMYNGMTGEKIEAEIFVGVVYYQKLHHMTADKVYARSRGPVQIL 497

Query: 1363 TRQPTGRRWK 1372
            TRQPT  R +
Sbjct: 498  TRQPTEGRAR 507



 Score = 99.4 bits (246), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 52/132 (39%), Positives = 75/132 (56%), Gaps = 15/132 (11%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKR 751
           ++D + EG IEYLD  E  +++IA+SE  +     THLEI P  + GV AG         
Sbjct: 88  WNDLIKEGVIEYLDAEEEENAYIAISEDELTE-EHTHLEIDPAVMFGVSAG--------- 137

Query: 752 FHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTI 811
                L+PY +HN +PRNT + AM KQA+G    N + R DT  + L Y Q P+V ++ +
Sbjct: 138 -----LIPYANHNSSPRNTMEAAMAKQALGIYASNYKYRTDTRSHLLFYPQIPLVRTRIM 192

Query: 812 RITNFHKLPAGK 823
            I  + K+PAG+
Sbjct: 193 DINEYDKMPAGQ 204


>gi|88601062|gb|ABD46527.1| RNA polymerase II second largest subunit, partial [Tulasnella
            pruinosa]
          Length = 656

 Score =  224 bits (570), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 107/263 (40%), Positives = 162/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DT+   L Y Q+P+  ++++    F
Sbjct: 326  IIPFPDHNQSPRNTYQSAMGKQAMGIFLTNYQIRMDTMSNILYYPQKPLATTRSMEYLKF 385

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   V K+  NQ  +  
Sbjct: 386  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSMYYRSYMDVEKKSGNQNLEEF 445

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 446  EKPTRDTTLRMKHGTYDKLEDDGLIAPGTGVSGEDIIIGKTAPIPPDSEELGQRTQTHSK 505

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++N E    +K+ +R TR P++GDKF+SRHGQKG +G+  
Sbjct: 506  RDVSTPLKSTENGIIDQVLITTNGEGLKFVKIRVRSTRIPQVGDKFASRHGQKGTVGITY 565

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 566  RQEDMPFTAQGITPDIIINPHAI 588



 Score =  134 bits (338), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 63/151 (41%), Positives = 92/151 (60%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++N E    +K+ +R TR P++GDKF+SRHGQKG +G+  
Sbjct: 506  RDVSTPLKSTENGIIDQVLITTNGEGLKFVKIRVRSTRIPQVGDKFASRHGQKGTVGITY 565

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 566  RQEDMPFTAQGITPDIIINPHAIPSRMTIGHLVECLLSKLATLLGNEGDATPFTDLTVES 625

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYI 1333
            V   L   GY  +G ++ Y G TG+ L+A +
Sbjct: 626  VSTLLRAKGYQSRGLEVMYHGHTGKKLQAQV 656



 Score =  108 bits (271), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/159 (35%), Positives = 93/159 (58%), Gaps = 4/159 (2%)

Query: 186 FDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINSQ 244
           F + + ++  TIT  L  ++ TGNW  ++  M  + GV+QVL+R ++ S L  + R N+ 
Sbjct: 27  FTLASAVKHTTITQGLKYSLATGNWGDQKKSMSAKAGVSQVLNRYTFASTLSHLRRCNTP 86

Query: 245 FEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNI 304
             +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM+ I+  +    +++ +   
Sbjct: 87  LGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSLSAPIIEFLEEW 146

Query: 305 GIEHIAMFNGEELSSPGVYLVFVNGILAGITCHHKEVCK 343
           G+E +   +   L+      VFVNG+  G+     E+ K
Sbjct: 147 GLEPLEEHS---LNPASATKVFVNGVWMGVHRDAHELVK 182



 Score = 91.3 bits (225), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 75/161 (46%), Gaps = 40/161 (24%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVS----ESGIRPG----------------------V 725
           +   L EG IE LD  E     I ++    E+  RP                        
Sbjct: 249 WSSLLNEGVIELLDAEEEETVMICMTSEDLEASARPKDEFMDDPEFDPAKRVKAQMNAHT 308

Query: 726 TTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGY 785
            TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    
Sbjct: 309 WTHCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGIFLT 354

Query: 786 NQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
           N Q R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 355 NYQIRMDTMSNILYYPQKPLATTRSMEYLKFRELPAGQNAI 395


>gi|212223363|ref|YP_002306599.1| DNA-directed RNA polymerase subunit B [Thermococcus onnurineus NA1]
 gi|212008320|gb|ACJ15702.1| Subunit B of DNA-dependent RNA polymerase [Thermococcus onnurineus
            NA1]
          Length = 1120

 Score =  223 bits (568), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 115/266 (43%), Positives = 166/266 (62%), Gaps = 8/266 (3%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            LVPYP HN APRNTY   M KQ++G    N + R+DT  + + Y Q P+V S+ ++   F
Sbjct: 653  LVPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHFMHYPQVPLVNSRIMKAVGF 712

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR- 1032
             + PAGQN  +AV+SY GY++EDA+IMNKAS++RG  R   +R  +   K+Y     DR 
Sbjct: 713  EERPAGQNFVVAVLSYQGYNMEDAIIMNKASIERGLARSTFFRTYEAEEKRYLGGQTDRF 772

Query: 1033 -ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAIS----MAT 1087
             +  P ++    +  YRH  LD+DGI+ P  ++  + VLV ++ P   +   S    +  
Sbjct: 773  EVPDPTIQGYLGEKYYRH--LDEDGIIFPESKVEGKDVLVGRTSPPRFLEEQSGLGGIIL 830

Query: 1088 PEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
             E +E  V+ + S    ++KV+++   +   L+K+ +R  R PE GDKF+SRHGQKGVIG
Sbjct: 831  QERRETSVAVRPSEKGIVDKVIITETGDGTKLVKVTVRDLRIPEFGDKFASRHGQKGVIG 890

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            LIV QEDMP+ ESGI PD+I+NPHG+
Sbjct: 891  LIVPQEDMPWTESGIVPDLIVNPHGI 916



 Score =  203 bits (516), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 111/241 (46%), Positives = 155/241 (64%), Gaps = 4/241 (1%)

Query: 1132 IGDKFSSRHGQKGVI--GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSY 1189
            +G+K+     + G+I     VE +D+    +   P  +    GL G   + E +E  V+ 
Sbjct: 783  LGEKYYRHLDEDGIIFPESKVEGKDVLVGRTS-PPRFLEEQSGLGGII-LQERRETSVAV 840

Query: 1190 KGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPF 1249
            + S    ++KV+++   +   L+K+ +R  R PE GDKF+SRHGQKGVIGLIV QEDMP+
Sbjct: 841  RPSEKGIVDKVIITETGDGTKLVKVTVRDLRIPEFGDKFASRHGQKGVIGLIVPQEDMPW 900

Query: 1250 NESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIR 1309
             ESGI PD+I+NPHG PSRMTVG+LIE + GK   ++G   +GTAF G     +++EL  
Sbjct: 901  TESGIVPDLIVNPHGIPSRMTVGQLIEAIGGKVASLKGRRVDGTAFIGEPEERLRKELEE 960

Query: 1310 HGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGR 1369
             G+ + G+++ Y GITG  LEA I+ G +YYQ+L HMV DK+HARSRGP  VLT+QPT  
Sbjct: 961  LGFKHSGREVMYDGITGRRLEADIFVGVIYYQRLHHMVADKMHARSRGPVQVLTKQPTEG 1020

Query: 1370 R 1370
            R
Sbjct: 1021 R 1021



 Score = 96.3 bits (238), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 84/156 (53%), Gaps = 9/156 (5%)

Query: 188 IVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEK 247
           + N +R D ++  +  A+ TG W        R GV+Q+L R +Y+S L  + R+ S   +
Sbjct: 391 VRNSIRPDVLSERIEHALATGAWP-----GGRTGVSQLLDRTNYMSTLSHLRRVTSPLSR 445

Query: 248 TRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIE 307
            +     R L G+ WG +CP++TPEG  CGLVKNLALM  ITT   E+ +   +  +G+ 
Sbjct: 446 DQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITTGIPEEEVRDYLNRLGVV 505

Query: 308 HIAMFNGEELSSPGVYLVFVNGILAGITCHHKEVCK 343
            I     E+  S  ++ V++NG+L G     + + K
Sbjct: 506 PIE----EKRPSLELWRVYLNGVLIGTVEDGERLVK 537



 Score = 85.1 bits (209), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/132 (35%), Positives = 69/132 (52%), Gaps = 15/132 (11%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKR 751
           + D +  G IEYLD  E  ++++A     +     THLE+ P  +LG+ A          
Sbjct: 603 WSDLIKMGVIEYLDAEEEENAYVATWPWEV-TAEHTHLELMPAAILGIPAS--------- 652

Query: 752 FHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTI 811
                LVPYP HN APRNTY   M KQ++G    N + R+DT  + + Y Q P+V S+ +
Sbjct: 653 -----LVPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHFMHYPQVPLVNSRIM 707

Query: 812 RITNFHKLPAGK 823
           +   F + PAG+
Sbjct: 708 KAVGFEERPAGQ 719



 Score = 43.9 bits (102), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 38/59 (64%), Gaps = 1/59 (1%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           D W ++ ++ KEKGLV+ H+DS++ FI+  +++++     I  D+ P F +K+  I +G
Sbjct: 13  DLWLVMEAYWKEKGLVRQHLDSYNAFIDYGMQQVINEFGGIKPDI-PDFEVKFGKIRLG 70



 Score = 41.6 bits (96), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 40/78 (51%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A   + +  + H+ V     + KA YL +M  +++         DD+D+Y NKRL+LAG 
Sbjct: 291 AEHIIDNNLLPHMGVEEKDRRAKAYYLGMMALKVLELSLGLRGEDDKDHYANKRLKLAGD 350

Query: 516 LLSLMFEDVFKRFNSELK 533
           LL  +F   F +   +++
Sbjct: 351 LLRDLFRVAFGQLVKDMQ 368



 Score = 41.2 bits (95), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 4/66 (6%)

Query: 343 KPEIEESFNYTRQTTPHECRLRDLTYSAPITVD-IEYTRG-SQRVVRSDLVIGRMPIMLQ 400
           +PE +E+    +   P + R+R+LTYSAP+ ++ I    G +Q  V  ++ IG +PIML+
Sbjct: 71  EPEFQEAQGQRKPLYPMDARIRNLTYSAPLYLELIPVVNGIAQEPV--EVRIGELPIMLK 128

Query: 401 SSKCVL 406
           S  C L
Sbjct: 129 SKACRL 134


>gi|110704333|gb|ABG88065.1| RNA polymerase II second largest subunit [Microstroma juglandis]
          Length = 716

 Score =  223 bits (568), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 108/263 (41%), Positives = 162/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DT+   L Y Q+P+  ++++   NF
Sbjct: 371  IIPFPDHNQSPRNTYQSAMGKQAMGVYLTNYQMRMDTMANILYYPQKPLATTRSMEHLNF 430

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++I+N++S+DRG  R L YR      K+      +  
Sbjct: 431  RELPAGQNAIVAILCYSGYNQEDSVILNQSSIDRGLFRSLYYRTYTDFEKKVGFTLQEEF 490

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P+ +   R     +  +D DG+VAPG ++    +++ K+ P    S    +   T   
Sbjct: 491  EKPVRDTAIRLKHGTYDKIDADGLVAPGTRVSGEDIIIGKTAPLPPDSEELGLRSKTHTK 550

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VLVS+N E +  +K+ +R TR P+ GDKF+SRHGQKG IG+  
Sbjct: 551  RDVSTPLKSTESGIVDQVLVSTNQEGSKFVKVRVRSTRVPQTGDKFASRHGQKGTIGITY 610

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   G+ PDII+NPH +
Sbjct: 611  RQEDMPFTIEGVTPDIIINPHAI 633



 Score =  160 bits (406), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 76/165 (46%), Positives = 104/165 (63%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VLVS+N E +  +K+ +R TR P+ GDKF+SRHGQKG IG+  
Sbjct: 551  RDVSTPLKSTESGIVDQVLVSTNQEGSKFVKVRVRSTRVPQTGDKFASRHGQKGTIGITY 610

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   G+ PDII+NPH  PSRMT+G L+E L  K   + G   + T F    +  
Sbjct: 611  RQEDMPFTIEGVTPDIIINPHAIPSRMTIGHLVECLLSKVATLSGQEGDATPFTDLTVEA 670

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMV 1347
            V   L + GY  +G +I Y+G TG  L+A +Y GP YYQ+LKHMV
Sbjct: 671  VSSILAKLGYQKRGLEIMYNGHTGRKLQAQVYLGPTYYQRLKHMV 715



 Score =  112 bits (281), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 54/150 (36%), Positives = 92/150 (61%), Gaps = 4/150 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F +   ++  TITN L  ++ TGNW   ++F   + GV+QVL+R ++ S L  + R N+
Sbjct: 43  EFHLTAAVKSSTITNGLRYSLATGNWGDQKKFMQAKAGVSQVLNRYTFASTLSHLRRCNT 102

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNL+LM+ I+  +    + + +  
Sbjct: 103 PIGRDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSLISVGSPSAPLHQFLDE 162

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAG 333
            G++++      ++S+     VFVNG+ AG
Sbjct: 163 FGLDNLVDM---QVSAAKATKVFVNGVWAG 189



 Score = 95.5 bits (236), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/111 (44%), Positives = 63/111 (56%), Gaps = 14/111 (12%)

Query: 716 VSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAM 775
           VS     P   TH EI P  +LGVCA I              +P+P HNQ+PRNTYQ AM
Sbjct: 344 VSSRYYEPSTWTHCEIHPAMILGVCASI--------------IPFPDHNQSPRNTYQSAM 389

Query: 776 GKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
           GKQAMG    N Q R+DT+   L Y Q+P+  ++++   NF +LPAG+  I
Sbjct: 390 GKQAMGVYLTNYQMRMDTMANILYYPQKPLATTRSMEHLNFRELPAGQNAI 440


>gi|120561263|gb|ABM27016.1| RNA polymerase II second largest subunit, partial [Catenaria
            anguillulae]
          Length = 892

 Score =  222 bits (566), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 110/262 (41%), Positives = 167/262 (63%), Gaps = 2/262 (0%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL   L Y QRP+V ++++    F
Sbjct: 551  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFQLRMDTLANILYYPQRPLVTTRSMTYLRF 610

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R + YR+     K+      +  
Sbjct: 611  RELPAGQNAIVAITCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYFDSEKKSGGVEEEVF 670

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPT-ISVSAISMATPEY-K 1091
              P  +   R     +  LD DGI++PG Q+    +++ K+ P    VS +   T +  K
Sbjct: 671  EKPNRDTTMRLRRGTYDLLDDDGIISPGTQVKGDDIILGKTAPLPDDVSEMGARTTQTKK 730

Query: 1092 EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVE 1151
            +V  S K +   Y++ V+V++N+++   +K+ +R TR P++GDKF+SRHGQKG +G+   
Sbjct: 731  DVSTSLKATEKGYVDHVIVTTNADNLKFVKVRVRSTRVPQMGDKFASRHGQKGTVGVTYR 790

Query: 1152 QEDMPFNESGICPDIIMNPHGL 1173
            QEDMPF+  G+ PD+I+NPH +
Sbjct: 791  QEDMPFSALGVTPDLIVNPHAI 812



 Score =  166 bits (421), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 78/204 (38%), Positives = 126/204 (61%), Gaps = 6/204 (2%)

Query: 1144 GVI--GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVL 1201
            G+I  G  V+ +D+   ++   PD +       G       K+V  S K +   Y++ V+
Sbjct: 693  GIISPGTQVKGDDIILGKTAPLPDDVSE----MGARTTQTKKDVSTSLKATEKGYVDHVI 748

Query: 1202 VSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMN 1261
            V++N+++   +K+ +R TR P++GDKF+SRHGQKG +G+   QEDMPF+  G+ PD+I+N
Sbjct: 749  VTTNADNLKFVKVRVRSTRVPQMGDKFASRHGQKGTVGVTYRQEDMPFSALGVTPDLIVN 808

Query: 1262 PHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFY 1321
            PH  PSRMT+G L+E L  K G + G   + T F    + ++ ++L +HG+  +G ++ Y
Sbjct: 809  PHAIPSRMTIGHLVECLLSKVGALVGTEGDATPFTDLTVQEISQQLAQHGFQQRGFEVMY 868

Query: 1322 SGITGEALEAYIYSGPVYYQKLKH 1345
            +G TG  L+A ++ GP YYQ+LKH
Sbjct: 869  NGHTGRKLDAQVFFGPTYYQRLKH 892



 Score =  116 bits (291), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 72/209 (34%), Positives = 115/209 (55%), Gaps = 19/209 (9%)

Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQ--FDIVN 190
           ID  D+F     KK +     + + +   F+ K++     I  +    I+ +Q  F + +
Sbjct: 180 IDDRDHFG----KKRLDLAGPLLASLFKTFFSKFVK---DITREFTKSIERSQGPFHLAS 232

Query: 191 HMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
            ++   ITN L  A+ TGNW  ++  ME R GV+QVL+R ++ S L  + R+N+   +  
Sbjct: 233 VVKPGIITNGLRYALATGNWGDQKKFMETRAGVSQVLNRYTFASTLSHLRRLNTPIGREG 292

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHI 309
           K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM +I+     + +++ +   GIE++
Sbjct: 293 KLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMAYISVGTSAEPVVEALQEYGIENL 352

Query: 310 AMFNGEELSSPGVYL----VFVNGILAGI 334
                EE+S          VFVNG   GI
Sbjct: 353 -----EEISDASAVADATKVFVNGAWVGI 376



 Score = 93.6 bits (231), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 47/100 (47%), Positives = 60/100 (60%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 535 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 580

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
            Q R+DTL   L Y QRP+V ++++    F +LPAG+  I
Sbjct: 581 FQLRMDTLANILYYPQRPLVTTRSMTYLRFRELPAGQNAI 620



 Score = 58.2 bits (139), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 44/77 (57%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           ARD L    + HI         KA ++  M+ RM+LA      +DDRD++G KRL+LAG 
Sbjct: 137 ARDLLERETLPHIGTTPGCETRKAWFIGYMVHRMLLAALGRRPIDDRDHFGKKRLDLAGP 196

Query: 516 LLSLMFEDVFKRFNSEL 532
           LL+ +F+  F +F  ++
Sbjct: 197 LLASLFKTFFSKFVKDI 213


>gi|254169060|ref|ZP_04875898.1| DNA-directed RNA polymerase, beta subunit, putative [Aciduliprofundum
            boonei T469]
 gi|197622030|gb|EDY34607.1| DNA-directed RNA polymerase, beta subunit, putative [Aciduliprofundum
            boonei T469]
          Length = 1201

 Score =  222 bits (565), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 110/263 (41%), Positives = 166/263 (63%), Gaps = 2/263 (0%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            G VPYPHHN +PR T   AM KQ++G    N + R DT  + L Y Q P+V +KT+   N
Sbjct: 733  GCVPYPHHNSSPRITMGAAMLKQSLGLPAANYRRRPDTRGHLLHYPQAPIVRTKTMDFVN 792

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F + PAGQNA +A++SY GY+I+DA++MNKAS++RGFGR   +R  K   ++YP    D+
Sbjct: 793  FMRRPAGQNAVVAIISYHGYNIQDAIVMNKASVERGFGRSTFFRTYKSEERRYPGGQEDK 852

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAIS--MATPEY 1090
               P  +        R++ LD+DG+++P   +    VL+ K+ P   +   S  +   + 
Sbjct: 853  FEIPSPDVRGAMTEDRYKLLDEDGLISPEVYVKGGDVLIGKTSPPRFLEEESELLGPQKR 912

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            +E  V+ +     +++ VL++ +  ++ L+K+ +R  R PE+GDKF+SRHGQKGV+G I+
Sbjct: 913  RESSVTMRPEEEGWVDSVLLTVSENNSRLVKVKVRDQRIPELGDKFASRHGQKGVVGAII 972

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF ESGI PD+I+NPH +
Sbjct: 973  PQEDMPFTESGIIPDLIINPHAI 995



 Score =  211 bits (537), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 97/191 (50%), Positives = 136/191 (71%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            +E  V+ +     +++ VL++ +  ++ L+K+ +R  R PE+GDKF+SRHGQKGV+G I+
Sbjct: 913  RESSVTMRPEEEGWVDSVLLTVSENNSRLVKVKVRDQRIPELGDKFASRHGQKGVVGAII 972

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF ESGI PD+I+NPH  PSRMTVG ++E++ GK G +EG + +GT F G     
Sbjct: 973  PQEDMPFTESGIIPDLIINPHAIPSRMTVGHILEMIGGKVGSLEGRFVDGTVFSGEPEKA 1032

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
            ++E L+++G+ Y GK+I Y GITG  +EA I+ G +YYQKL HMV  K HARSRGP  +L
Sbjct: 1033 LREALVKNGFKYNGKEIMYDGITGRKIEAEIFVGVIYYQKLHHMVAGKFHARSRGPVQIL 1092

Query: 1363 TRQPTGRRWKL 1373
            TRQPT  R +L
Sbjct: 1093 TRQPTEGRSRL 1103



 Score = 99.4 bits (246), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/149 (36%), Positives = 86/149 (57%), Gaps = 14/149 (9%)

Query: 192 MRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKV 251
           +RQD +T  +  A+ TGNW        R GV+Q+L R S++S L  + R+ S   +++  
Sbjct: 436 IRQDVLTQKIMHAMSTGNWV-----GGRTGVSQLLDRTSHMSTLSHLRRVISPLTRSQPH 490

Query: 252 SGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAM 311
              R L  +QWG LCP++TPEG+ CGLVKN AL+  ++    E+++LKI+  +G+E    
Sbjct: 491 FEARDLHPTQWGRLCPNETPEGQNCGLVKNAALIIDVSEGYPEEDVLKILKGLGVEERQY 550

Query: 312 FNGEELSSPGVYLVFVNGILAGITCHHKE 340
             GE      +  V++NG L G   +HK+
Sbjct: 551 ETGE------LARVYLNGNLVG---YHKD 570



 Score = 78.6 bits (192), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 76/178 (42%), Gaps = 57/178 (32%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAV----------------------------------- 716
            +D + EG +E++D  E  +++IAV                                   
Sbjct: 640 IEDLVREGVVEWIDAEEEENAYIAVYAYDVPERCPHCGRVLGRNDVEWMNPGEGEKVTLR 699

Query: 717 -----SESGIRPGVT---THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPR 768
                +E G+   +T   THLEI P  +LG  AG               VPYPHHN +PR
Sbjct: 700 CKHCGAEFGVEKKITKEHTHLEIDPLLILGAVAG--------------CVPYPHHNSSPR 745

Query: 769 NTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
            T   AM KQ++G    N + R DT  + L Y Q P+V +KT+   NF + PAG+  +
Sbjct: 746 ITMGAAMLKQSLGLPAANYRRRPDTRGHLLHYPQAPIVRTKTMDFVNFMRRPAGQNAV 803



 Score = 46.6 bits (109), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 16/86 (18%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIE---------YTRGSQRVVRSDLV 391
           + +PEI+E+   T Q TP E RLRDL+Y AP+ + I+         Y R  + V      
Sbjct: 85  IGRPEIKEATGATVQITPMEARLRDLSYLAPLYLKIKVLECDDAGCYEREPEMV-----K 139

Query: 392 IGRMPIMLQSSKCVLR--NKTEYTSS 415
           IG  P+M++S  C L   N  +Y  S
Sbjct: 140 IGDFPVMVKSKICTLHEDNIDDYLDS 165



 Score = 42.0 bits (97), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 37/75 (49%)

Query: 459 FLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGSLLS 518
            L S+ + H+         KA YL  M RR++         DD+D+  NKRL+L+G LL 
Sbjct: 343 ILDSSLLPHLGTSKEDRIKKAYYLGRMARRVLELHLGLRKEDDKDHLANKRLKLSGDLLE 402

Query: 519 LMFEDVFKRFNSELK 533
            +F   F+    +LK
Sbjct: 403 ELFRMAFEALMKDLK 417


>gi|390939172|ref|YP_006402910.1| DNA-directed RNA polymerase subunit B [Desulfurococcus fermentans DSM
            16532]
 gi|390192279|gb|AFL67335.1| DNA-directed RNA polymerase subunit B [Desulfurococcus fermentans DSM
            16532]
          Length = 1166

 Score =  222 bits (565), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 107/265 (40%), Positives = 162/265 (61%), Gaps = 2/265 (0%)

Query: 911  SPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRI 970
            +  ++PYP HNQ+PRN YQ AM KQ++G    N Q R+DT  + L Y QRP+VE++ + +
Sbjct: 693  TASIIPYPEHNQSPRNMYQSAMAKQSLGLYAANFQRRMDTRGHFLHYPQRPLVETRMMNV 752

Query: 971  TNFHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTH 1030
              +++ PAGQN  +AV++Y+GY++EDALIMN++S++RG  R   +R    V  +YP    
Sbjct: 753  IGYNERPAGQNMVVAVLTYTGYNMEDALIMNRSSVERGLARSTFFRLYTTVEYKYPGGIQ 812

Query: 1031 DRILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPT--ISVSAISMATP 1088
            D I  P       +    +  L++DGIVAP  Q+    VL+ K  P   +S     +   
Sbjct: 813  DEITIPSTNVRGYRGQKAYEKLEEDGIVAPETQVSGGDVLIGKVSPPRFLSAQEYEVGGL 872

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
              ++  +  +      ++ VL++ +SE   LIK+ +R  R PE+GDKF+SRHGQKGV+GL
Sbjct: 873  TRQDTSIVMRHEEKGIVDTVLITMDSEGNKLIKVRVRDLRIPELGDKFASRHGQKGVLGL 932

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            ++ Q DMPF E G+ PD+I+NPH  
Sbjct: 933  LLPQYDMPFTEEGVTPDLIINPHAF 957



 Score =  201 bits (510), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 97/182 (53%), Positives = 128/182 (70%), Gaps = 7/182 (3%)

Query: 1197 LEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICP 1256
            ++ VL++ +SE   LIK+ +R  R PE+GDKF+SRHGQKGV+GL++ Q DMPF E G+ P
Sbjct: 889  VDTVLITMDSEGNKLIKVRVRDLRIPELGDKFASRHGQKGVLGLLLPQYDMPFTEEGVTP 948

Query: 1257 DIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQG 1316
            D+I+NPH +PSRMTV +L+E +AGKA  +EG   +GT F  T + D+Q  L RHGY Y G
Sbjct: 949  DLIINPHAFPSRMTVAQLMESIAGKAAALEGRIIDGTPFYKTPIEDLQIILRRHGYPYTG 1008

Query: 1317 KDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPT-------GR 1369
            ++  Y G TGE ++  ++ G VYYQKL HM  DKIHAR+RGP  +LTRQPT       G 
Sbjct: 1009 EEAMYDGRTGELIKTPVFIGIVYYQKLHHMASDKIHARARGPVQILTRQPTEGRSRAGGL 1068

Query: 1370 RW 1371
            RW
Sbjct: 1069 RW 1070



 Score =  101 bits (251), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 79/135 (58%), Gaps = 15/135 (11%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKR 751
           F+D + +G IEYLD +E  +++IA+  S +     THLEI    +LG+ A I        
Sbjct: 646 FEDLVKQGIIEYLDPDEEENAYIALQPSDV-TAEHTHLEIWIPAILGITASI-------- 696

Query: 752 FHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTI 811
                 +PYP HNQ+PRN YQ AM KQ++G    N Q R+DT  + L Y QRP+VE++ +
Sbjct: 697 ------IPYPEHNQSPRNMYQSAMAKQSLGLYAANFQRRMDTRGHFLHYPQRPLVETRMM 750

Query: 812 RITNFHKLPAGKCQI 826
            +  +++ PAG+  +
Sbjct: 751 NVIGYNERPAGQNMV 765



 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 71/125 (56%), Gaps = 5/125 (4%)

Query: 182 KAAQFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRI 241
           K  + D+    +   IT+ +  A+ TGNW        R GV+Q+L R + +S L  + R+
Sbjct: 402 KTKKIDLKMVFKPSIITDRIQHAMATGNWP-----GGRTGVSQLLDRTNMLSTLSHLRRV 456

Query: 242 NSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIM 301
            S   + +     R L G+QWG +CP +TPEG   GLVKNLALMT+++   D+K +  ++
Sbjct: 457 VSPLARGQPHFEARELHGTQWGRMCPFETPEGANIGLVKNLALMTNVSVGIDDKEIEALL 516

Query: 302 YNIGI 306
           Y +G+
Sbjct: 517 YRVGV 521



 Score = 44.3 bits (103), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 10/85 (11%)

Query: 456 ARDFLSSTCIAHIPVIN---MRFKMKAMYLAVMIRRMV---LALSDPDMLDDRDYYGNKR 509
           A+  L    + HI + +    R K KA+++  MI R++   L    PD   D+D+Y NKR
Sbjct: 314 AQRLLDERLLPHIGIDSSPETRLK-KAVFIGQMISRIIELQLGYRGPD---DKDHYRNKR 369

Query: 510 LELAGSLLSLMFEDVFKRFNSELKE 534
           L+LAG +L+++       F  E+KE
Sbjct: 370 LKLAGDMLAVLLRAAMMGFAREIKE 394



 Score = 42.0 bits (97), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 6/57 (10%)

Query: 346 IEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSS 402
           IEES       TP ECRLR+LTY+ PI V +     S      +L +  +P+ML+SS
Sbjct: 79  IEES------KTPMECRLRNLTYATPIYVSVRIEDESGYTREQELKLMDLPVMLKSS 129


>gi|218884686|ref|YP_002429068.1| DNA-directed RNA polymerase subunit B [Desulfurococcus kamchatkensis
            1221n]
 gi|218766302|gb|ACL11701.1| DNA-directed RNA polymerase, subunit B [Desulfurococcus kamchatkensis
            1221n]
          Length = 1149

 Score =  222 bits (565), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 107/265 (40%), Positives = 162/265 (61%), Gaps = 2/265 (0%)

Query: 911  SPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRI 970
            +  ++PYP HNQ+PRN YQ AM KQ++G    N Q R+DT  + L Y QRP+VE++ + +
Sbjct: 676  TASIIPYPEHNQSPRNMYQSAMAKQSLGLYAANFQRRMDTRGHFLHYPQRPLVETRMMNV 735

Query: 971  TNFHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTH 1030
              +++ PAGQN  +AV++Y+GY++EDALIMN++S++RG  R   +R    V  +YP    
Sbjct: 736  IGYNERPAGQNMVVAVLTYTGYNMEDALIMNRSSVERGLARSTFFRLYTTVEYKYPGGIQ 795

Query: 1031 DRILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPT--ISVSAISMATP 1088
            D I  P       +    +  L++DGIVAP  Q+    VL+ K  P   +S     +   
Sbjct: 796  DEITIPSTNVRGYRGQKAYEKLEEDGIVAPETQVSGGDVLIGKVSPPRFLSTQEYEVGGL 855

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
              ++  +  +      ++ VL++ +SE   LIK+ +R  R PE+GDKF+SRHGQKGV+GL
Sbjct: 856  TRQDTSIVMRHEEKGIVDTVLITMDSEGNKLIKVRVRDLRIPELGDKFASRHGQKGVLGL 915

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            ++ Q DMPF E G+ PD+I+NPH  
Sbjct: 916  LLPQYDMPFTEEGVTPDLIINPHAF 940



 Score =  201 bits (510), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 97/182 (53%), Positives = 128/182 (70%), Gaps = 7/182 (3%)

Query: 1197 LEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICP 1256
            ++ VL++ +SE   LIK+ +R  R PE+GDKF+SRHGQKGV+GL++ Q DMPF E G+ P
Sbjct: 872  VDTVLITMDSEGNKLIKVRVRDLRIPELGDKFASRHGQKGVLGLLLPQYDMPFTEEGVTP 931

Query: 1257 DIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQG 1316
            D+I+NPH +PSRMTV +L+E +AGKA  +EG   +GT F  T + D+Q  L RHGY Y G
Sbjct: 932  DLIINPHAFPSRMTVAQLMESIAGKAAALEGRIIDGTPFYKTPIEDLQIILRRHGYPYTG 991

Query: 1317 KDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPT-------GR 1369
            ++  Y G TGE ++  ++ G VYYQKL HM  DKIHAR+RGP  +LTRQPT       G 
Sbjct: 992  EEAMYDGRTGELIKTPVFIGIVYYQKLHHMASDKIHARARGPVQILTRQPTEGRSRAGGL 1051

Query: 1370 RW 1371
            RW
Sbjct: 1052 RW 1053



 Score =  100 bits (250), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 79/135 (58%), Gaps = 15/135 (11%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKR 751
           F+D + +G +EYLD +E  +++IA+  S +     THLEI    +LG+ A I        
Sbjct: 629 FEDLVKQGIVEYLDPDEEENAYIALQPSDV-TAEHTHLEIWIPAILGITASI-------- 679

Query: 752 FHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTI 811
                 +PYP HNQ+PRN YQ AM KQ++G    N Q R+DT  + L Y QRP+VE++ +
Sbjct: 680 ------IPYPEHNQSPRNMYQSAMAKQSLGLYAANFQRRMDTRGHFLHYPQRPLVETRMM 733

Query: 812 RITNFHKLPAGKCQI 826
            +  +++ PAG+  +
Sbjct: 734 NVIGYNERPAGQNMV 748



 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/125 (36%), Positives = 71/125 (56%), Gaps = 5/125 (4%)

Query: 182 KAAQFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRI 241
           K  + D+    +   IT+ +  A+ TGNW        R GV+Q+L R + +S L  + R+
Sbjct: 385 KTKKIDLKMVFKPSIITDRIQHAMATGNWP-----GGRTGVSQLLDRTNMLSTLSHLRRV 439

Query: 242 NSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIM 301
            S   + +     R L G+QWG +CP +TPEG   GLVKNLALMT+++   D+K +  ++
Sbjct: 440 VSPLARGQPHFEARELHGTQWGRMCPFETPEGANIGLVKNLALMTNVSVGIDDKEIEALL 499

Query: 302 YNIGI 306
           Y IG+
Sbjct: 500 YRIGV 504



 Score = 45.4 bits (106), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 31/116 (26%)

Query: 446 QTYKKTPVDDARDFLSSTCI---------------------AHIPVIN---MRFKMKAMY 481
           + Y++  +++A DF++S  I                      HI + +    R K KA++
Sbjct: 266 EEYRRKVIEEALDFIASKFIIGRPREERILRAERLLDERLLPHIGIDSSPETRLK-KAVF 324

Query: 482 LAVMIRRMV---LALSDPDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELKE 534
           +  MI R++   L   +PD   D+D+Y NKRL+LAG +L+++       F  E+KE
Sbjct: 325 IGQMISRIIELQLGYREPD---DKDHYRNKRLKLAGDMLAVLLRAAMMGFAREIKE 377



 Score = 42.0 bits (97), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 6/57 (10%)

Query: 346 IEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSS 402
           IEES       TP ECRLR+LTY+ PI V +     S      +L +  +P+ML+SS
Sbjct: 62  IEES------KTPMECRLRNLTYATPIYVSVRIEDESGYTREQELKLMDLPVMLKSS 112


>gi|289596766|ref|YP_003483462.1| DNA-directed RNA polymerase subunit B [Aciduliprofundum boonei T469]
 gi|289534553|gb|ADD08900.1| DNA-directed RNA polymerase subunit B [Aciduliprofundum boonei T469]
          Length = 1201

 Score =  222 bits (565), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 110/263 (41%), Positives = 166/263 (63%), Gaps = 2/263 (0%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            G VPYPHHN +PR T   AM KQ++G    N + R DT  + L Y Q P+V +KT+   N
Sbjct: 733  GCVPYPHHNSSPRITMGAAMLKQSLGLPAANYRRRPDTRGHLLHYPQAPIVRTKTMDFVN 792

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F + PAGQNA +A++SY GY+I+DA++MNKAS++RGFGR   +R  K   ++YP    D+
Sbjct: 793  FMRRPAGQNAVVAIISYHGYNIQDAIVMNKASVERGFGRSTFFRTYKSEERRYPGGQEDK 852

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAIS--MATPEY 1090
               P  +        R++ LD+DG+++P   +    VL+ K+ P   +   S  +   + 
Sbjct: 853  FEIPSPDVRGAMTEDRYKLLDEDGLISPEVYVKGGDVLIGKTSPPRFLEEESELLGPQKR 912

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            +E  V+ +     +++ VL++ +  ++ L+K+ +R  R PE+GDKF+SRHGQKGV+G I+
Sbjct: 913  RESSVTMRPEEEGWVDSVLLTVSENNSRLVKVKVRDQRIPELGDKFASRHGQKGVVGAII 972

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF ESGI PD+I+NPH +
Sbjct: 973  PQEDMPFTESGIIPDLIINPHAI 995



 Score =  211 bits (537), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 97/191 (50%), Positives = 136/191 (71%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            +E  V+ +     +++ VL++ +  ++ L+K+ +R  R PE+GDKF+SRHGQKGV+G I+
Sbjct: 913  RESSVTMRPEEEGWVDSVLLTVSENNSRLVKVKVRDQRIPELGDKFASRHGQKGVVGAII 972

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF ESGI PD+I+NPH  PSRMTVG ++E++ GK G +EG + +GT F G     
Sbjct: 973  PQEDMPFTESGIIPDLIINPHAIPSRMTVGHILEMIGGKVGSLEGRFVDGTVFSGEPEKA 1032

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
            ++E L+++G+ Y GK+I Y GITG  +EA I+ G +YYQKL HMV  K HARSRGP  +L
Sbjct: 1033 LREALVKNGFKYNGKEIMYDGITGRKIEAEIFVGVIYYQKLHHMVAGKFHARSRGPVQIL 1092

Query: 1363 TRQPTGRRWKL 1373
            TRQPT  R +L
Sbjct: 1093 TRQPTEGRSRL 1103



 Score = 99.4 bits (246), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/149 (36%), Positives = 86/149 (57%), Gaps = 14/149 (9%)

Query: 192 MRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKV 251
           +RQD +T  +  A+ TGNW        R GV+Q+L R S++S L  + R+ S   +++  
Sbjct: 436 IRQDVLTQKIMHAMSTGNWV-----GGRTGVSQLLDRTSHMSTLSHLRRVISPLTRSQPH 490

Query: 252 SGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAM 311
              R L  +QWG LCP++TPEG+ CGLVKN AL+  ++    E+++LKI+  +G+E    
Sbjct: 491 FEARDLHPTQWGRLCPNETPEGQNCGLVKNAALIIDVSEGYPEEDVLKILKGLGVEERQY 550

Query: 312 FNGEELSSPGVYLVFVNGILAGITCHHKE 340
             GE      +  V++NG L G   +HK+
Sbjct: 551 ETGE------LARVYLNGNLVG---YHKD 570



 Score = 79.0 bits (193), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 77/182 (42%), Gaps = 57/182 (31%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAV------------------------------- 716
           G    +D + EG +E++D  E  +++IAV                               
Sbjct: 636 GKMEIEDLVREGVVEWIDAEEEENAYIAVYAYDVPERCPHCGRVLGRNDVEWMNPGEGEK 695

Query: 717 ---------SESGIRPGVT---THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHN 764
                    +E G+   +T   THLEI P  +LG  AG               VPYPHHN
Sbjct: 696 VTLRCKHCGAEFGVEKKITKEHTHLEIDPLLILGAVAG--------------CVPYPHHN 741

Query: 765 QAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKC 824
            +PR T   AM KQ++G    N + R DT  + L Y Q P+V +KT+   NF + PAG+ 
Sbjct: 742 SSPRITMGAAMLKQSLGLPAANYRRRPDTRGHLLHYPQAPIVRTKTMDFVNFMRRPAGQN 801

Query: 825 QI 826
            +
Sbjct: 802 AV 803



 Score = 46.6 bits (109), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 16/86 (18%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIE---------YTRGSQRVVRSDLV 391
           + +PEI+E+   T Q TP E RLRDL+Y AP+ + I+         Y R  + V      
Sbjct: 85  IGRPEIKEATGATVQITPMEARLRDLSYLAPLYLKIKVLECDDAGCYEREPEMV-----K 139

Query: 392 IGRMPIMLQSSKCVLR--NKTEYTSS 415
           IG  P+M++S  C L   N  +Y  S
Sbjct: 140 IGDFPVMVKSKICTLHEDNIDDYLDS 165



 Score = 42.0 bits (97), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 37/75 (49%)

Query: 459 FLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGSLLS 518
            L S+ + H+         KA YL  M RR++         DD+D+  NKRL+L+G LL 
Sbjct: 343 ILDSSLLPHLGTSKEDRIKKAYYLGRMARRVLELHLGLRKEDDKDHLANKRLKLSGDLLE 402

Query: 519 LMFEDVFKRFNSELK 533
            +F   F+    +LK
Sbjct: 403 ELFRMAFEALMKDLK 417


>gi|440801047|gb|ELR22072.1| DNAdirected RNA polymerase, beta subunit [Acanthamoeba castellanii
            str. Neff]
          Length = 1196

 Score =  222 bits (565), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 109/261 (41%), Positives = 165/261 (63%), Gaps = 2/261 (0%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL + L Y Q+P++ + ++   +F
Sbjct: 736  IIPFPDHNQSPRNTYQSAMGKQAMGVYTTNYQLRMDTLAHVLYYPQKPLITTHSMEHLHF 795

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             KLP+GQN  IA+  YSGY+ ED+L+MN++S+DRGF R + YR S    +++  Q  +  
Sbjct: 796  RKLPSGQNGIIAIACYSGYNQEDSLVMNQSSVDRGFFRSVFYR-SYVDSEKHMGQYDEEF 854

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATP-EYKE 1092
              P+ E         +  ++ DG++APG ++    +++ K+ P       + A     K+
Sbjct: 855  EKPIREDTMGMRHGSYEKIEDDGLIAPGTRVSGDDIIIGKTTPVSPNEEDTRAQRFSKKD 914

Query: 1093 VPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQ 1152
              +S + S    ++KV++S+NS+     K+ +R  R P+IGDKFSSRHGQKG +G++  Q
Sbjct: 915  SSISVRSSETGIIDKVMLSTNSDGYKFCKVRVRSVRTPQIGDKFSSRHGQKGTVGIMYRQ 974

Query: 1153 EDMPFNESGICPDIIMNPHGL 1173
            EDMPFN  GI PDII+NPH +
Sbjct: 975  EDMPFNIEGITPDIIVNPHAI 995



 Score =  195 bits (495), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 93/190 (48%), Positives = 125/190 (65%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            K+  +S + S    ++KV++S+NS+     K+ +R  R P+IGDKFSSRHGQKG +G++ 
Sbjct: 913  KDSSISVRSSETGIIDKVMLSTNSDGYKFCKVRVRSVRTPQIGDKFSSRHGQKGTVGIMY 972

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPFN  GI PDII+NPH  PSRMT+G+LIE L GK     G   + T F  T +  
Sbjct: 973  RQEDMPFNIEGITPDIIVNPHAIPSRMTIGQLIECLMGKVSATTGEEGDATPFTNTTVES 1032

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
            + + L   GY  +G ++ Y+G TG  LEA  + GP YYQ+LKHMV DKIH+R+RGP  +L
Sbjct: 1033 ISDLLHGVGYQRRGNEVMYNGHTGRKLEAQFFIGPTYYQRLKHMVDDKIHSRARGPVQIL 1092

Query: 1363 TRQPTGRRWK 1372
            TRQP   R +
Sbjct: 1093 TRQPVEGRSR 1102



 Score =  120 bits (302), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 61/153 (39%), Positives = 94/153 (61%), Gaps = 8/153 (5%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQ 244
           +F+++  ++  TITN L  ++ TGNWT  R    + GV+QVL+RL++ S L  + R+N+ 
Sbjct: 450 EFNLMMAVKSKTITNGLKYSLATGNWTSTRSVGAKSGVSQVLNRLTFASTLSHLRRLNTP 509

Query: 245 FEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNI 304
             +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM +I+  +    +L+ +   
Sbjct: 510 IGREGKLAKPRQLHNTHWGMICPAETPEGQACGLVKNLALMAYISVGSASAPILEFL--- 566

Query: 305 GIEHIAMFNGEELSS---PGVYLVFVNGILAGI 334
             E  +  N EE+S    P    +FVNG   GI
Sbjct: 567 --EEWSTENLEEISPSNIPAATKIFVNGAWVGI 597



 Score = 99.4 bits (246), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 81/151 (53%), Gaps = 22/151 (14%)

Query: 681 LNMHQFLGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVT--------THLEIA 732
           L   + L  K +   + +G +EY+D  E     IA++   ++   +        TH EI 
Sbjct: 666 LQQDESLSEKGWSHLVSQGFVEYIDCEEEETVMIAMTIDDLKKSRSEEAYSYTYTHCEIH 725

Query: 733 PFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRID 792
           P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N Q R+D
Sbjct: 726 PSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVYTTNYQLRMD 771

Query: 793 TLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
           TL + L Y Q+P++ + ++   +F KLP+G+
Sbjct: 772 TLAHVLYYPQKPLITTHSMEHLHFRKLPSGQ 802



 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 60/124 (48%), Gaps = 14/124 (11%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A++ L    + H+ +       KA +   +I R++LA      LDDRD+YGNKRL+LAG 
Sbjct: 361 AKEILQKEMLPHVGISQYCETKKAYFFGYIIHRLLLAAQGKRPLDDRDHYGNKRLDLAGP 420

Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYGNKIYIRS 561
           LL  +F  +FK+ N ++           KE NL   V    + +G  + L  GN    RS
Sbjct: 421 LLGTLFRQLFKKLNKDVRGYLQKCVDSGKEFNLMMAVKSKTITNGLKYSLATGNWTSTRS 480

Query: 562 PSRK 565
              K
Sbjct: 481 VGAK 484



 Score = 47.8 bits (112), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 14/78 (17%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYT------------RGSQRVVRS 388
           + +P + E+   T+   P+E RLR+LTYSAP+ VD+  T            + ++ + R 
Sbjct: 114 LSRPTMTEADGSTQAMLPNEARLRNLTYSAPLFVDMSKTTITAAGEEGETHQSTEELSR- 172

Query: 389 DLVIGRMPIMLQSSKCVL 406
            + IG++PIML+S+ C+L
Sbjct: 173 -VFIGKVPIMLRSNYCML 189


>gi|409095097|ref|ZP_11215121.1| DNA-directed RNA polymerase subunit B [Thermococcus zilligii AN1]
          Length = 1120

 Score =  221 bits (564), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 114/264 (43%), Positives = 163/264 (61%), Gaps = 4/264 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            LVPYP HN APRNTY   M KQ++G    N + RIDT  + L Y Q P+V S+ ++   F
Sbjct: 653  LVPYPEHNAAPRNTYGAGMAKQSLGLGAANFRLRIDTRGHLLHYPQVPLVNSRIMKAVGF 712

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             + PAGQN  +AV+SY GY++EDA+I+NKAS++RG GR   +R  +   K+Y     DR 
Sbjct: 713  EERPAGQNFVVAVLSYHGYNMEDAVIINKASIERGLGRSTFFRTYEAEEKRYLGGQTDRF 772

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAI----SMATPE 1089
              P            +R LD+DGI+ P  ++  + VLV ++ P   +        +A  E
Sbjct: 773  EKPDPTIKGYLGDRYYRNLDEDGIIFPESRVEGKDVLVGRTSPPRFLEEQGRLGGIALQE 832

Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             +E  V+ + S    ++KV+++   +   L+K+ +R  R PE+GDKF+SRHGQKGV+GLI
Sbjct: 833  RRETSVAARPSEEGIVDKVIITETGDGTKLVKVTVRDLRIPELGDKFASRHGQKGVVGLI 892

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
            V QEDMP+ ESGI PD+I+NPHG+
Sbjct: 893  VPQEDMPWTESGIVPDLIVNPHGI 916



 Score =  206 bits (525), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 110/243 (45%), Positives = 155/243 (63%), Gaps = 4/243 (1%)

Query: 1132 IGDKFSSRHGQKGVI--GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSY 1189
            +GD++     + G+I     VE +D+    +   P   +   G  G   + E +E  V+ 
Sbjct: 783  LGDRYYRNLDEDGIIFPESRVEGKDVLVGRT--SPPRFLEEQGRLGGIALQERRETSVAA 840

Query: 1190 KGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPF 1249
            + S    ++KV+++   +   L+K+ +R  R PE+GDKF+SRHGQKGV+GLIV QEDMP+
Sbjct: 841  RPSEEGIVDKVIITETGDGTKLVKVTVRDLRIPELGDKFASRHGQKGVVGLIVPQEDMPW 900

Query: 1250 NESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIR 1309
             ESGI PD+I+NPHG PSRMTVG+LIE + GK   ++G   +GTAF G     ++ EL  
Sbjct: 901  TESGIVPDLIVNPHGIPSRMTVGQLIEAIGGKVASLKGRRVDGTAFIGEPEEKLRRELEE 960

Query: 1310 HGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGR 1369
             G+ + G++I Y GITG  LEA I+ G +YYQ+L HMV DK+HARSRGP  VLT+QPT  
Sbjct: 961  LGFKHNGREILYDGITGRRLEAEIFVGVIYYQRLHHMVADKMHARSRGPVQVLTKQPTEG 1020

Query: 1370 RWK 1372
            R +
Sbjct: 1021 RAR 1023



 Score =  106 bits (264), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 56/156 (35%), Positives = 88/156 (56%), Gaps = 9/156 (5%)

Query: 188 IVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEK 247
           + N +R D ++  +  A+ TG+W        R GV+Q+L R +Y+S L  + R+ S  ++
Sbjct: 391 VRNSIRPDVLSERIEHALATGSWP-----GGRTGVSQLLDRTNYMSTLSHLRRVTSPLDR 445

Query: 248 TRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIE 307
            +     R L G+ WG +CP++TPEG  CGLVKNLALM  ITT   E+ +   +  +GI 
Sbjct: 446 EQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITTGLPEEKVRVYLEKLGIV 505

Query: 308 HIAMFNGEELSSPGVYLVFVNGILAGITCHHKEVCK 343
            I     E   +PG+Y V++NG+L G     +E+ +
Sbjct: 506 PIE----ERRPAPGLYRVYLNGVLIGTVEKGRELVE 537



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/132 (37%), Positives = 70/132 (53%), Gaps = 15/132 (11%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKR 751
           + D +  G IEYLD  E  ++++A     +  G  THLE+ P  +LG+ A          
Sbjct: 603 WSDLIRMGVIEYLDAEEEENAYVATWPWEV-TGEHTHLELMPAAILGIPAS--------- 652

Query: 752 FHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTI 811
                LVPYP HN APRNTY   M KQ++G    N + RIDT  + L Y Q P+V S+ +
Sbjct: 653 -----LVPYPEHNAAPRNTYGAGMAKQSLGLGAANFRLRIDTRGHLLHYPQVPLVNSRIM 707

Query: 812 RITNFHKLPAGK 823
           +   F + PAG+
Sbjct: 708 KAVGFEERPAGQ 719



 Score = 43.1 bits (100), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 37/59 (62%), Gaps = 1/59 (1%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           D W ++ S+ KEKGLV+ H+DS++ F++  +++++     +  D+ P   +K+  I VG
Sbjct: 13  DLWLVMESYWKEKGLVRQHLDSYNAFVDYGLQEVIDEFGGVKPDI-PNLEVKFGKIRVG 70



 Score = 42.0 bits (97), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 40/78 (51%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A   + +  + H+ V     K KA YL +M  +++         DD+D+Y NKRL+LAG 
Sbjct: 291 AEHIIDNNLLPHMGVGPENRKAKAYYLGMMALKVLELSLGLRGEDDKDHYANKRLKLAGD 350

Query: 516 LLSLMFEDVFKRFNSELK 533
           LL  +F   F +   +++
Sbjct: 351 LLKDLFRVAFGQLVKDME 368


>gi|425773185|gb|EKV11554.1| DNA-directed RNA polymerase [Penicillium digitatum Pd1]
 gi|425778788|gb|EKV16893.1| DNA-directed RNA polymerase [Penicillium digitatum PHI26]
          Length = 1255

 Score =  221 bits (564), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 111/266 (41%), Positives = 166/266 (62%), Gaps = 9/266 (3%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R++T+   L Y Q+P+  ++++    F
Sbjct: 784  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFSQRMETMANILYYPQKPLATTRSMEFLRF 843

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+ +YSGY+ ED++IMN++S+DRG  R L YR      K    Q  +R 
Sbjct: 844  RELPAGQNAIVAIATYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYADTEKMVGLQVVERF 903

Query: 1034 LGPLLEADT---RKPVYRHRALDQDGIVAPGEQICERQVLVNKSMP-TISVSAISMATPE 1089
              P +  DT   RK  Y    LD+DGIVAPG ++    +++ K+ P       +   T  
Sbjct: 904  EKP-MRIDTLGMRKGTYDK--LDEDGIVAPGVRVSGEDIIIGKTAPLAADAEELGQRTKA 960

Query: 1090 YKEVPVS--YKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
            + ++ VS   + +    +++VLVS+ ++D   +K+ +R T+ P+IGDKF+SRHGQKG IG
Sbjct: 961  HTKIDVSTPLRSTENGIVDQVLVSTGNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIG 1020

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            +   QEDMPF   G+ PD+I+NPH +
Sbjct: 1021 ITYRQEDMPFTREGVVPDLIINPHAI 1046



 Score =  179 bits (455), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 82/176 (46%), Positives = 115/176 (65%)

Query: 1197 LEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICP 1256
            +++VLVS+ ++D   +K+ +R T+ P+IGDKF+SRHGQKG IG+   QEDMPF   G+ P
Sbjct: 978  VDQVLVSTGNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRQEDMPFTREGVVP 1037

Query: 1257 DIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQG 1316
            D+I+NPH  PSRMT+  LIE    K   + G   + T F    +  V   L  HGY  +G
Sbjct: 1038 DLIINPHAIPSRMTIAHLIECQLSKVSALRGFEGDATPFTDVTVDSVSRLLREHGYQSRG 1097

Query: 1317 KDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
             ++ ++G TG  + A ++ GP YYQ+L+HMV DKIHAR+RGP  +LTRQP   R +
Sbjct: 1098 FEVMFNGHTGRKMVAQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRAR 1153



 Score =  111 bits (277), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 56/144 (38%), Positives = 85/144 (59%), Gaps = 3/144 (2%)

Query: 192 MRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRK 250
           ++  T+T  L  A+ TGNW   ++    + GV+QVLSR ++ S L  + R N+   +  K
Sbjct: 467 IKASTLTGGLKYALATGNWGEQKKAASAKAGVSQVLSRYTFSSSLSHLRRTNTPIGRDGK 526

Query: 251 VSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIA 310
           ++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT     + ++  M    +E + 
Sbjct: 527 IAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPAEPIVDFMIQRNMEVLE 586

Query: 311 MFNGEELSSPGVYLVFVNGILAGI 334
            F  E   +P    VFVNG+  GI
Sbjct: 587 EF--EPQVTPNATKVFVNGVWVGI 608



 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/105 (41%), Positives = 59/105 (56%), Gaps = 14/105 (13%)

Query: 722 RPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMG 781
           R    TH EI P  +LGVCA I              +P+P HNQ+PRNTYQ AMGKQAMG
Sbjct: 763 RAHTWTHCEIHPSMILGVCASI--------------IPFPDHNQSPRNTYQSAMGKQAMG 808

Query: 782 CIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
               N   R++T+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 809 VFLTNFSQRMETMANILYYPQKPLATTRSMEFLRFRELPAGQNAI 853



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 56/115 (48%), Gaps = 16/115 (13%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMV-LALSDPDMLDDRDYYGNKRLELAG 514
           ARD +    + HI         KA +L  M+ R++  AL   D +DDRD++G KRL+LAG
Sbjct: 371 ARDIMQKELLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRD-VDDRDHFGKKRLDLAG 429

Query: 515 SLLSLMFEDVFKRFNSELK-------ETNLSGVVN-------LVSGWWFELKYGN 555
            LL+ +F  +F R   +L+       ETN    +N       L  G  + L  GN
Sbjct: 430 PLLASLFRTLFTRVTKDLQRYVQRCVETNREIYLNIGIKASTLTGGLKYALATGN 484


>gi|315230005|ref|YP_004070441.1| DNA-directed RNA polymerase subunit B [Thermococcus barophilus MP]
 gi|315183033|gb|ADT83218.1| DNA-directed RNA polymerase subunit B [Thermococcus barophilus MP]
          Length = 1118

 Score =  221 bits (564), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 113/266 (42%), Positives = 166/266 (62%), Gaps = 8/266 (3%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            LVPYP HN APRNTY   M KQ++G    N + R+DT  + L Y Q P+V S+ ++   F
Sbjct: 651  LVPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGF 710

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR- 1032
             + PAGQN  +AV+SY GY++EDA+++NKAS++RG  R   +R  +   K+Y     D+ 
Sbjct: 711  EERPAGQNFVVAVLSYQGYNMEDAIVINKASIERGLARSTFFRTYEAEEKKYLGGQTDKF 770

Query: 1033 -ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAIS----MAT 1087
             I  P +     +  YRH  LD+DGI+ P  ++  + VLV ++ P   +   S    +  
Sbjct: 771  EIPDPTVRGYRGEKYYRH--LDEDGIIFPESKVSGKDVLVGRTSPPRFLEEQSGLGGIIL 828

Query: 1088 PEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
             E +E  ++ + S    ++KV+++   +   L+K+ +R  R PE+GDKF+SRHGQKGVIG
Sbjct: 829  QERRETSIAVRPSEKGVVDKVIITETGDGTKLVKVTVRDLRIPELGDKFASRHGQKGVIG 888

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            LIV QEDMP+ ESGI PD+I+NPHG+
Sbjct: 889  LIVPQEDMPWTESGIVPDLIVNPHGI 914



 Score =  203 bits (517), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 104/207 (50%), Positives = 141/207 (68%), Gaps = 1/207 (0%)

Query: 1164 PDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPE 1223
            P  +    GL G   + E +E  ++ + S    ++KV+++   +   L+K+ +R  R PE
Sbjct: 814  PRFLEEQSGLGGII-LQERRETSIAVRPSEKGVVDKVIITETGDGTKLVKVTVRDLRIPE 872

Query: 1224 IGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAG 1283
            +GDKF+SRHGQKGVIGLIV QEDMP+ ESGI PD+I+NPHG PSRMTVG+LIE + GK  
Sbjct: 873  LGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLIEAIGGKVA 932

Query: 1284 LMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKL 1343
             ++G   +GTAF G     +++EL   G+ + G++I Y GITG  LEA I+ G +YYQ+L
Sbjct: 933  SLKGRRIDGTAFIGEPEEKLRKELEELGFKHSGREIMYDGITGRRLEADIFIGVIYYQRL 992

Query: 1344 KHMVQDKIHARSRGPRVVLTRQPTGRR 1370
             HMV DK+HARSRGP  VLT+QPT  R
Sbjct: 993  HHMVADKMHARSRGPVQVLTKQPTEGR 1019



 Score =  107 bits (266), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 57/146 (39%), Positives = 83/146 (56%), Gaps = 9/146 (6%)

Query: 188 IVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEK 247
           + N +R D +T  +  A+ TG W        R GV+Q+L R +Y+S L  + R+ S   +
Sbjct: 391 VRNSVRPDVLTERIEHALATGAWP-----GGRTGVSQLLDRTNYMSTLSHLRRVTSPLSR 445

Query: 248 TRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIE 307
            +     R L G+ WG +CP++TPEG  CGLVKNLALM  ITT   E+ +LK +  +GI 
Sbjct: 446 DQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITTAIPEEEVLKYLRKLGIV 505

Query: 308 HIAMFNGEELSSPGVYLVFVNGILAG 333
            I     E   +P V+ V++NG+L G
Sbjct: 506 SIE----ERRPNPHVWRVYLNGVLIG 527



 Score = 85.1 bits (209), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/132 (36%), Positives = 69/132 (52%), Gaps = 15/132 (11%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKR 751
           + D +  G IEYLD  E  ++++A     +     THLE+ P  +LG+ A          
Sbjct: 601 WSDLIKMGVIEYLDAEEEENAYVATWPWEVTKE-HTHLELMPAAILGIPAS--------- 650

Query: 752 FHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTI 811
                LVPYP HN APRNTY   M KQ++G    N + R+DT  + L Y Q P+V S+ +
Sbjct: 651 -----LVPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLLHYPQIPLVNSRIM 705

Query: 812 RITNFHKLPAGK 823
           +   F + PAG+
Sbjct: 706 KAVGFEERPAGQ 717



 Score = 44.7 bits (104), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 39/69 (56%)

Query: 343 KPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSS 402
           +PE +E+    +   P + R+R+LTY+API +++            ++ IG +PIML+S 
Sbjct: 71  EPEFQEAQGQRKPLYPMDARIRNLTYAAPIYLEMIPVVNGIEQEPVEVRIGELPIMLKSK 130

Query: 403 KCVLRNKTE 411
            C L  K+E
Sbjct: 131 ACRLYGKSE 139



 Score = 43.1 bits (100), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 37/59 (62%), Gaps = 1/59 (1%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           D W ++ S+  EKGLV+ H+DS++ FI+  +++++     I  D+ P F +K+  I +G
Sbjct: 13  DLWSVMESYWNEKGLVRQHLDSYNAFIDHGMQEVINEFGGIKPDI-PNFEVKFGKIRLG 70


>gi|255955085|ref|XP_002568295.1| Pc21g12680 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211590006|emb|CAP96165.1| Pc21g12680 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1255

 Score =  221 bits (563), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 110/266 (41%), Positives = 166/266 (62%), Gaps = 9/266 (3%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R++T+   L Y Q+P+  ++++    F
Sbjct: 784  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFSQRMETMANILYYPQKPLATTRSMEFLRF 843

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+ +YSGY+ ED++IMN++S+DRG  R L YR      K    Q  +R 
Sbjct: 844  RELPAGQNAIVAIATYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYADTEKMVGLQVVERF 903

Query: 1034 LGPLLEADT---RKPVYRHRALDQDGIVAPGEQICERQVLVNKSMP-TISVSAISMATPE 1089
              P +  DT   RK  Y    LD+DGIVAPG ++    +++ K+ P       +   T  
Sbjct: 904  EKP-MRLDTLGMRKGTYDK--LDEDGIVAPGVRVSGEDIIIGKTAPLAADAEELGQRTKA 960

Query: 1090 YKEVPVS--YKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
            + ++ VS   + +    +++VL+S+ ++D   +K+ +R T+ P+IGDKF+SRHGQKG IG
Sbjct: 961  HTKIDVSTPLRSTENGIVDQVLISTGNDDLKFVKVRMRTTKVPQIGDKFASRHGQKGTIG 1020

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            +   QEDMPF   G+ PD+I+NPH +
Sbjct: 1021 ITYRQEDMPFTREGVVPDLIINPHAI 1046



 Score =  180 bits (457), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 82/176 (46%), Positives = 115/176 (65%)

Query: 1197 LEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICP 1256
            +++VL+S+ ++D   +K+ +R T+ P+IGDKF+SRHGQKG IG+   QEDMPF   G+ P
Sbjct: 978  VDQVLISTGNDDLKFVKVRMRTTKVPQIGDKFASRHGQKGTIGITYRQEDMPFTREGVVP 1037

Query: 1257 DIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQG 1316
            D+I+NPH  PSRMT+  LIE    K   + G   + T F    +  V   L  HGY  +G
Sbjct: 1038 DLIINPHAIPSRMTIAHLIECQLSKVSALRGFEGDATPFTDVTVDSVSRLLREHGYQSRG 1097

Query: 1317 KDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
             ++ ++G TG  L A ++ GP YYQ+L+HMV DKIHAR+RGP  +LTRQP   R +
Sbjct: 1098 FEVMFNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRAR 1153



 Score =  111 bits (278), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 56/144 (38%), Positives = 85/144 (59%), Gaps = 3/144 (2%)

Query: 192 MRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRK 250
           ++  T+T  L  A+ TGNW   ++    + GV+QVLSR ++ S L  + R N+   +  K
Sbjct: 467 IKASTLTGGLKYALATGNWGEQKKAASAKAGVSQVLSRYTFASSLSHLRRTNTPIGRDGK 526

Query: 251 VSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIA 310
           ++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT     + ++  M    +E + 
Sbjct: 527 IAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPAEPIVDFMIQRNMEVLE 586

Query: 311 MFNGEELSSPGVYLVFVNGILAGI 334
            F  E   +P    VFVNG+  GI
Sbjct: 587 EF--EPQVTPNATKVFVNGVWVGI 608



 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/105 (41%), Positives = 59/105 (56%), Gaps = 14/105 (13%)

Query: 722 RPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMG 781
           R    TH EI P  +LGVCA I              +P+P HNQ+PRNTYQ AMGKQAMG
Sbjct: 763 RAHTWTHCEIHPSMILGVCASI--------------IPFPDHNQSPRNTYQSAMGKQAMG 808

Query: 782 CIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
               N   R++T+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 809 VFLTNFSQRMETMANILYYPQKPLATTRSMEFLRFRELPAGQNAI 853



 Score = 55.1 bits (131), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 56/115 (48%), Gaps = 16/115 (13%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMV-LALSDPDMLDDRDYYGNKRLELAG 514
           ARD +    + HI         KA +L  M+ R++  AL   D +DDRD++G KRL+LAG
Sbjct: 371 ARDIMQKELLPHISQNEGSETRKAFFLGYMVHRLLQCALGRRD-VDDRDHFGKKRLDLAG 429

Query: 515 SLLSLMFEDVFKRFNSELK-------ETNLSGVVN-------LVSGWWFELKYGN 555
            LL+ +F  +F R   +L+       ETN    +N       L  G  + L  GN
Sbjct: 430 PLLASLFRTLFTRVTKDLQRYVQRCVETNREIYLNIGIKASTLTGGLKYALATGN 484


>gi|403161549|ref|XP_003321874.2| DNA-directed RNA polymerase II subunit RPB2 [Puccinia graminis f. sp.
            tritici CRL 75-36-700-3]
 gi|375171826|gb|EFP77455.2| DNA-directed RNA polymerase II subunit RPB2 [Puccinia graminis f. sp.
            tritici CRL 75-36-700-3]
          Length = 1131

 Score =  221 bits (563), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 162/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N + R+DT+   L Y Q+P+  ++++    F
Sbjct: 655  IIPFPDHNQSPRNTYQSAMGKQAMGVYLTNFRTRMDTMANILYYPQKPLATTRSMEYLRF 714

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R   YR+     K+      +  
Sbjct: 715  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSFYYRSYMDQEKRAGALQMEEF 774

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  ++  R     +  LD DGI+ PG ++    +++ K+ P    S      M T   
Sbjct: 775  EKPTRDSTLRLKHGTYDKLDDDGIITPGTRVSGDDIIIGKTAPIPKDSEELGQRMKTHTK 834

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V +  K +    +++VLV++N +    +K+ +R TR PE GDKF+SRHGQKG +G++ 
Sbjct: 835  RDVSMPLKSTENGIIDQVLVTTNQDGLKFVKVRIRSTRIPETGDKFASRHGQKGTVGILY 894

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   G+CPDII+NPH +
Sbjct: 895  RQEDMPFTSEGVCPDIIINPHAI 917



 Score =  189 bits (480), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 88/188 (46%), Positives = 122/188 (64%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V +  K +    +++VLV++N +    +K+ +R TR PE GDKF+SRHGQKG +G++ 
Sbjct: 835  RDVSMPLKSTENGIIDQVLVTTNQDGLKFVKVRIRSTRIPETGDKFASRHGQKGTVGILY 894

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   G+CPDII+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 895  RQEDMPFTSEGVCPDIIINPHAIPSRMTIGHLVECLLSKVSTITGNEGDATPFSEVTVEA 954

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
            +   L   GY  +G +I ++G TG+ L A  Y GP YYQ+LKHMV DKIH+R+RGP  +L
Sbjct: 955  ISALLKDKGYQSRGLEIMFNGHTGKKLRAQCYLGPTYYQRLKHMVNDKIHSRARGPVQIL 1014

Query: 1363 TRQPTGRR 1370
            TRQP   R
Sbjct: 1015 TRQPVEGR 1022



 Score =  117 bits (294), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 59/150 (39%), Positives = 96/150 (64%), Gaps = 4/150 (2%)

Query: 186 FDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINSQ 244
           F++   ++ +TITN L  ++ TGNW  ++  M+ R GV+QVL+R ++ S L  + R N+ 
Sbjct: 337 FNLNAAVKSNTITNGLKYSLATGNWGDQKKAMQARAGVSQVLNRYTFASTLSHLRRCNTP 396

Query: 245 FEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNI 304
             +  K++ PR L  S WGM+CP++TPEG+ACGLVKNLALM++I+  +    +++ +   
Sbjct: 397 IGRDGKIAKPRQLHNSHWGMVCPAETPEGQACGLVKNLALMSYISVGSPSAPIVEFLEEW 456

Query: 305 GIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
           G+E +  F+ +   S G   VFVNG+  G+
Sbjct: 457 GMESLDEFSSD--MSNGTK-VFVNGVWQGV 483



 Score = 88.6 bits (218), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 59/100 (59%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 639 THCEIHPAMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVYLTN 684

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
            + R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 685 FRTRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNAI 724


>gi|432329280|ref|YP_007247424.1| DNA-directed RNA polymerase subunit B [Aciduliprofundum sp.
            MAR08-339]
 gi|432135989|gb|AGB05258.1| DNA-directed RNA polymerase subunit B [Aciduliprofundum sp.
            MAR08-339]
          Length = 1201

 Score =  221 bits (562), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 109/263 (41%), Positives = 166/263 (63%), Gaps = 2/263 (0%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            G VPYPHHN +PR T   AM KQ++G    N + R DT  + L Y Q P+V++KT+   N
Sbjct: 733  GCVPYPHHNSSPRITMGAAMLKQSLGLPAANYRRRPDTRGHLLHYPQAPIVKTKTMDFVN 792

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F + PAGQNA +A++SY GY+++DA++MNKA+++RGFGR   +R  K   ++YP    DR
Sbjct: 793  FMRRPAGQNAVVAIISYHGYNMQDAIVMNKAAVERGFGRSTFFRTYKSEERRYPGGQEDR 852

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPT--ISVSAISMATPEY 1090
               P  +        R++ LD+DG+++P   +    VL+ K+ P   +   A  +   + 
Sbjct: 853  FEIPSPDVRGAMTEERYKLLDEDGLISPEMYVRGGDVLIGKTSPPRFLEEEAELLGPQKR 912

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            +E  V+ +     +++ VL++ +  ++ L+K+ +R  R PE+GDKF+SRHGQKGV+G IV
Sbjct: 913  RESSVTMRPEEVGWVDSVLLTVSENNSRLVKVKVRDQRIPELGDKFASRHGQKGVVGAIV 972

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF E GI PD+I+NPH +
Sbjct: 973  PQEDMPFTEGGIIPDLIINPHAI 995



 Score =  210 bits (534), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 98/191 (51%), Positives = 135/191 (70%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            +E  V+ +     +++ VL++ +  ++ L+K+ +R  R PE+GDKF+SRHGQKGV+G IV
Sbjct: 913  RESSVTMRPEEVGWVDSVLLTVSENNSRLVKVKVRDQRIPELGDKFASRHGQKGVVGAIV 972

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF E GI PD+I+NPH  PSRMTVG ++E++ GK G +EG + +GT F G     
Sbjct: 973  PQEDMPFTEGGIIPDLIINPHAIPSRMTVGHILEMIGGKVGSLEGRFVDGTVFKGEPEKA 1032

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
            ++E L+R+G+ Y GK+I Y GITG  +EA I+ G +YYQKL HMV  K HARSRGP  +L
Sbjct: 1033 LREALVRNGFKYNGKEIMYDGITGRKIEAEIFIGVIYYQKLHHMVAGKFHARSRGPVQIL 1092

Query: 1363 TRQPTGRRWKL 1373
            TRQPT  R +L
Sbjct: 1093 TRQPTEGRSRL 1103



 Score = 96.3 bits (238), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/142 (35%), Positives = 81/142 (57%), Gaps = 11/142 (7%)

Query: 192 MRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKV 251
           +RQD +T  +  A+ TGNW        R GV+Q+L R S++S L  + R+ S   +++  
Sbjct: 436 IRQDVLTQKIMHAMSTGNWV-----GGRTGVSQLLDRTSHMSTLSHLRRVISPLTRSQPH 490

Query: 252 SGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAM 311
              R L  +QWG LCP++TPEG+ CGLVKN AL+  ++    E+  LKI+ ++G+E    
Sbjct: 491 FEARDLHPTQWGRLCPNETPEGQNCGLVKNAALIIDVSEGYPEEKALKILRDLGVED--- 547

Query: 312 FNGEELSSPGVYLVFVNGILAG 333
               +  +  +  V++NG L G
Sbjct: 548 ---RQYETGNLARVYLNGNLVG 566



 Score = 77.0 bits (188), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 76/177 (42%), Gaps = 57/177 (32%)

Query: 693 DDFLYEGKIEYLDVNEGNDSHIAVSESGI-------------------RPG----VT--- 726
           DD + EG IE++D  E  +++IAV    +                    PG    VT   
Sbjct: 641 DDLVREGVIEWIDAEEEENAYIAVYAYDVPERCPHCNRVLGRGDVIWANPGEGEHVTLQC 700

Query: 727 -----------------THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRN 769
                            THLEI P  +LG  AG               VPYPHHN +PR 
Sbjct: 701 KHCGAEFEVEKKLTEEHTHLEIDPLLILGAVAG--------------CVPYPHHNSSPRI 746

Query: 770 TYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
           T   AM KQ++G    N + R DT  + L Y Q P+V++KT+   NF + PAG+  +
Sbjct: 747 TMGAAMLKQSLGLPAANYRRRPDTRGHLLHYPQAPIVKTKTMDFVNFMRRPAGQNAV 803



 Score = 45.8 bits (107), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 6/82 (7%)

Query: 340 EVCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTR----GSQRVVRSDLVIGRM 395
           ++ KPEI+E+   T Q TP E RLRD++Y AP+ + I        G        + IG  
Sbjct: 84  KIGKPEIKEATGATVQITPMEARLRDMSYLAPLYLQIMVVECDDSGCLEKEPEMVKIGDF 143

Query: 396 PIMLQSSKCVLR--NKTEYTSS 415
           P+M++S  C L   N  +Y  S
Sbjct: 144 PVMVKSKICTLHEDNIDDYLDS 165


>gi|164660997|ref|XP_001731621.1| hypothetical protein MGL_0889 [Malassezia globosa CBS 7966]
 gi|159105522|gb|EDP44407.1| hypothetical protein MGL_0889 [Malassezia globosa CBS 7966]
          Length = 1197

 Score =  220 bits (561), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 109/263 (41%), Positives = 164/263 (62%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DT+   L Y Q+P+  ++ +    F
Sbjct: 736  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYQIRMDTMANILYYPQKPLATTRAMEHLRF 795

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++++DRG  R L YR  + + K+    T +  
Sbjct: 796  RELPAGQNAIVAILCYSGYNQEDSVIMNQSAIDRGLFRSLYYRTFQDMEKKVGVITMEEF 855

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS-AISMATPEY-- 1090
              P  +   R     +  LD DG+V PG ++    +++ K+ P    S  + M +  +  
Sbjct: 856  EKPTRDTAIRLKHGTYEKLDVDGLVPPGTRVSGEDIIIGKTAPLPPDSDELGMRSKMHTK 915

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            K+V    K +    +++VL+++N E A  +K+ +R TR P++GDKF+SRHGQKG IG+  
Sbjct: 916  KDVSTPMKSTESGIIDQVLITTNGEGAKFVKVRVRSTRVPQVGDKFASRHGQKGTIGITY 975

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 976  RQEDMPFTCEGITPDIIINPHAI 998



 Score =  191 bits (484), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 89/188 (47%), Positives = 122/188 (64%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            K+V    K +    +++VL+++N E A  +K+ +R TR P++GDKF+SRHGQKG IG+  
Sbjct: 916  KDVSTPMKSTESGIIDQVLITTNGEGAKFVKVRVRSTRVPQVGDKFASRHGQKGTIGITY 975

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + G   + T F    +  
Sbjct: 976  RQEDMPFTCEGITPDIIINPHAIPSRMTIGHLVECLLSKVATLSGQEGDATPFTDLTVKG 1035

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
            V + L   G+  +G ++ Y+G TG  L+A +Y GP YYQ+LKHMV DKIH+R+RGP  +L
Sbjct: 1036 VSDILFSLGFQSRGLEVMYNGHTGRKLQAQVYLGPTYYQRLKHMVDDKIHSRARGPVQIL 1095

Query: 1363 TRQPTGRR 1370
            TRQP   R
Sbjct: 1096 TRQPVEGR 1103



 Score =  113 bits (282), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 55/150 (36%), Positives = 90/150 (60%), Gaps = 4/150 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F +   +R  TITN L  ++ TGNW  ++  M+ + GV+QVL+R ++ S L  + R N+
Sbjct: 430 EFHLQAAVRHATITNGLRYSLATGNWGDQKKAMQSKAGVSQVLNRYTFASTLSHLRRCNT 489

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNL+LM++I+       +++ +  
Sbjct: 490 PIGRDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSNISVGTPSAPIVEFLEE 549

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAG 333
            G+  +    G   + P    VFVNG+  G
Sbjct: 550 FGLTSLIDMQG---ADPKATKVFVNGVWLG 576



 Score = 90.1 bits (222), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 45/100 (45%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LGVCA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 720 THCEIHPAMILGVCASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 765

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
            Q R+DT+   L Y Q+P+  ++ +    F +LPAG+  I
Sbjct: 766 YQIRMDTMANILYYPQKPLATTRAMEHLRFRELPAGQNAI 805



 Score = 57.0 bits (136), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 14/114 (12%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A++ L    + HI +       KA +   M+ R++LA  D   +DDRD++G KRL+LAG 
Sbjct: 341 AQEILQKEMLPHISMSEGSNTKKAYFFGYMVHRLLLAALDRREIDDRDHFGKKRLDLAGP 400

Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYGN 555
           LLS +F  +F++   ++           +E +L   V    + +G  + L  GN
Sbjct: 401 LLSGLFRMLFRKVTRDIYRHLQRCVEDQREFHLQAAVRHATITNGLRYSLATGN 454


>gi|120561255|gb|ABM27012.1| RNA polymerase II second largest subunit, partial [Funneliformis
            mosseae]
          Length = 883

 Score =  220 bits (561), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 106/264 (40%), Positives = 164/264 (62%), Gaps = 5/264 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL   L Y Q+P+V ++ +    F
Sbjct: 539  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLANILYYPQKPLVTTRAMEFLRF 598

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+     K+    T +  
Sbjct: 599  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIFYRSYMDQEKKVGMLTIEEF 658

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMA----TPE 1089
              P  E   R     +  L++DG++APG ++    +++ K  P IS   + +     T  
Sbjct: 659  EKPTKETTLRLKHGTYEKLEEDGLIAPGTRVSGDDIIIGKVTP-ISPDTVELGQRKTTHT 717

Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             ++     + +    +++V+V++N+E    +K+ +R TR P++GDKF+SRHGQKG IG+ 
Sbjct: 718  KRDASTPMRSTETGIVDQVMVTTNAEGMKFVKVRVRSTRVPQMGDKFASRHGQKGTIGIT 777

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
              QEDMPF   GI PD+++NPH +
Sbjct: 778  YRQEDMPFTAEGITPDLVINPHAI 801



 Score =  157 bits (397), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 68/151 (45%), Positives = 100/151 (66%)

Query: 1197 LEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICP 1256
            +++V+V++N+E    +K+ +R TR P++GDKF+SRHGQKG IG+   QEDMPF   GI P
Sbjct: 733  VDQVMVTTNAEGMKFVKVRVRSTRVPQMGDKFASRHGQKGTIGITYRQEDMPFTAEGITP 792

Query: 1257 DIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQG 1316
            D+++NPH  PSRMT+G ++E L GK   + G   + T F    +  + + L   GY  +G
Sbjct: 793  DLVINPHAIPSRMTIGHMVECLLGKVSTLTGQEGDATPFTDVTVEAISQSLRSQGYQSRG 852

Query: 1317 KDIFYSGITGEALEAYIYSGPVYYQKLKHMV 1347
             ++ Y+G TG  L A ++ GP YYQ+LKHMV
Sbjct: 853  FEVMYNGHTGRKLSAQVFLGPTYYQRLKHMV 883



 Score =  111 bits (277), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 59/156 (37%), Positives = 93/156 (59%), Gaps = 10/156 (6%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW  ++  M+ R GV+QVL+R ++ S L  + R N+
Sbjct: 229 EFNLNLAIKAQTITNGLKYSLATGNWGDQKKAMQSRAGVSQVLNRYTFASTLSHLRRCNT 288

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNL+LM++I+  +  K ++  +  
Sbjct: 289 PMGRDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSYISVGSASKPIIDFL-- 346

Query: 304 IGIEHIAMFNGEELSSPGVY----LVFVNGILAGIT 335
              E   M N  +   P        VFVNG  AGI+
Sbjct: 347 ---EEYGMINLNQQFDPANIKDNTKVFVNGKWAGIS 379



 Score = 94.4 bits (233), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 48/110 (43%), Positives = 64/110 (58%), Gaps = 14/110 (12%)

Query: 717 SESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMG 776
           SE+ ++    TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMG
Sbjct: 513 SETNLKIHSWTHCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMG 558

Query: 777 KQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
           KQAMG    N Q R+DTL   L Y Q+P+V ++ +    F +LPAG+  I
Sbjct: 559 KQAMGIYVTNYQLRMDTLANILYYPQKPLVTTRAMEFLRFRELPAGQNAI 608



 Score = 60.1 bits (144), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 58/114 (50%), Gaps = 14/114 (12%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A+D L    + H+       K KA +L  M+ R++LA      LDDRD+YG KR++LAG 
Sbjct: 140 AKDILQKELLPHVSTEYGCEKRKAFFLGYMVHRLLLAALGRRELDDRDHYGKKRMDLAGP 199

Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYGN 555
           LL+ +F  +FK+   ++           +E NL+  +    + +G  + L  GN
Sbjct: 200 LLASLFRMLFKKLTKDVSIYLRKCIDSNREFNLNLAIKAQTITNGLKYSLATGN 253


>gi|45545349|gb|AAS67522.1| DNA-dependent RNA polymerase II second largest subunit, partial
            [Taphrina deformans]
          Length = 936

 Score =  220 bits (561), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 110/288 (38%), Positives = 169/288 (58%), Gaps = 5/288 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DT+   L Y Q+P+  ++++    F
Sbjct: 559  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYQVRMDTMANILYYPQKPLATTRSMEYLKF 618

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR  +   ++         
Sbjct: 619  RELPAGQNAIVAILCYSGYNQEDSMIMNQSSIDRGLFRSMFYRVYQDSEEKIDMNQAQEF 678

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSM-----PTISVSAISMATP 1088
              P  E   +     +  L+ DG+VAPG ++    V+V K+        ++  A   AT 
Sbjct: 679  EKPTRETTMKMKRSTYDKLEDDGLVAPGTRVSGEDVIVGKTAGLLKDENLADLASRSATQ 738

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
              ++V    + +    ++KV+VS+NS+    +K+ +R T+ P+IGDKF+SRHGQKG IG+
Sbjct: 739  TKRDVSTQLRSTEAGIIDKVMVSTNSDGHKFVKVRIRATKIPQIGDKFASRHGQKGTIGV 798

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSY 1196
                EDMPF   GI PD+I+NPH +     +    E  +S  GS+  +
Sbjct: 799  TYRNEDMPFTSEGIVPDLIINPHAIPSRMTVAHLVECQLSKVGSLSGF 846



 Score =  183 bits (465), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 87/190 (45%), Positives = 120/190 (63%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    + +    ++KV+VS+NS+    +K+ +R T+ P+IGDKF+SRHGQKG IG+  
Sbjct: 741  RDVSTQLRSTEAGIIDKVMVSTNSDGHKFVKVRIRATKIPQIGDKFASRHGQKGTIGVTY 800

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
              EDMPF   GI PD+I+NPH  PSRMTV  L+E    K G + G   + T F    +  
Sbjct: 801  RNEDMPFTSEGIVPDLIINPHAIPSRMTVAHLVECQLSKVGSLSGFEGDATPFTDVTVEA 860

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
            V   L   GY+ +G +I Y+G TG  L A ++ GP YYQ+LKH+V DKIHAR+RGP  +L
Sbjct: 861  VSNNLREQGYHSRGFEIMYNGHTGRKLMAQVFLGPTYYQRLKHLVDDKIHARARGPMQIL 920

Query: 1363 TRQPTGRRWK 1372
            TRQP   R +
Sbjct: 921  TRQPVEGRAR 930



 Score =  111 bits (277), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 93/151 (61%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TG W  ++ +M  R GV+QVL+R +Y S L  + R N+
Sbjct: 235 EFNLPLAVKHTTITNGLRYSLATGTWGDQKKQMNARVGVSQVLNRYTYASTLSHLRRTNT 294

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM++++  +    +++ +  
Sbjct: 295 PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMSYVSVGSASAPIIEFLEE 354

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E +  +N      P    +FVNG+  G+
Sbjct: 355 WGMESLEDYN-PSAGRPSTK-IFVNGVWLGV 383



 Score = 93.2 bits (230), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/131 (38%), Positives = 71/131 (54%), Gaps = 21/131 (16%)

Query: 703 YLDVNEGNDSHIAVSESG-IRPGVT------THLEIAPFTLLGVCAGIELLQYNKRFHSP 755
           Y++  +  +  IA   +  +RP V       TH EI P  +LG+CA I            
Sbjct: 512 YVEPEDEKERKIAAEAAKRLRPAVNKAQHLWTHCEIHPSMILGICASI------------ 559

Query: 756 GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 815
             +P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DT+   L Y Q+P+  ++++    
Sbjct: 560 --IPFPDHNQSPRNTYQSAMGKQAMGVFLTNYQVRMDTMANILYYPQKPLATTRSMEYLK 617

Query: 816 FHKLPAGKCQI 826
           F +LPAG+  I
Sbjct: 618 FRELPAGQNAI 628



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 45/79 (56%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A+D L    + HI         KA +L  M+ R++L   +    DDRD++G KR++LAG 
Sbjct: 146 AQDILQKEMLPHITTSEGFETRKAFFLGYMVHRLLLCALERRDPDDRDHFGKKRIDLAGP 205

Query: 516 LLSLMFEDVFKRFNSELKE 534
           LL+ +F  +FKR   ++++
Sbjct: 206 LLAGLFRMLFKRLTKDIRQ 224


>gi|108885423|gb|ABG23221.1| RNA polymerase II second largest subunit, partial [Bannoa sp. MP3490]
          Length = 646

 Score =  220 bits (561), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 110/263 (41%), Positives = 164/263 (62%), Gaps = 4/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AM KQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 350  IIPFPDHNQSPRNTYQSAM-KQAMGVYLTNYLVRMDTMANILYYPQKPLATTRSMEYLRF 408

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R L YR+     K+  N T +  
Sbjct: 409  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSLYYRSYMDQEKKQGNITMEEF 468

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P+ E   R     +  LD DG++APG ++    +++ K+ P +  S        T   
Sbjct: 469  EKPMRETTLRLKHGTYDKLDTDGLIAPGSRVSGEDIIIGKTAPIMGESEELGQRSKTQTK 528

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VLV++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 529  RDVSTPLKSTENGIVDQVLVTTNSEGLKFVKVRVRSTRVPQIGDKFASRHGQKGTIGITY 588

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF+  GI PD+I+NPH +
Sbjct: 589  RQEDMPFSNQGITPDLIINPHAI 611



 Score =  121 bits (304), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 55/113 (48%), Positives = 76/113 (67%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VLV++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 529  RDVSTPLKSTENGIVDQVLVTTNSEGLKFVKVRVRSTRVPQIGDKFASRHGQKGTIGITY 588

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAF 1295
             QEDMPF+  GI PD+I+NPH  PSRMT+G L+E L  K   + GN  + T F
Sbjct: 589  RQEDMPFSNQGITPDLIINPHAIPSRMTIGHLVECLLSKVSCIHGNEGDATPF 641



 Score =  115 bits (287), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 58/150 (38%), Positives = 91/150 (60%), Gaps = 4/150 (2%)

Query: 186 FDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINSQ 244
           F +   +R  TITN L  ++ TGNW  ++  M+ + GV+QVL+R ++ S L  +   N+ 
Sbjct: 44  FHLEQAIRSTTITNGLKYSLATGNWGDQKKAMQAKAGVSQVLNRYTFASTLSHLRXCNTP 103

Query: 245 FEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNI 304
             +  K++ PR L  S WGM+CP++TPEG+ACGLVKNLALM +I+  +    +++ +   
Sbjct: 104 IGRDGKIAKPRQLHNSHWGMVCPAETPEGQACGLVKNLALMAYISVGSPSAPIVEFLEEW 163

Query: 305 GIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
           G+E+   F+ +   S     VFVNG+  GI
Sbjct: 164 GMENFEEFSSDLAKSTK---VFVNGVWQGI 190



 Score = 80.1 bits (196), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 42/100 (42%), Positives = 57/100 (57%), Gaps = 15/100 (15%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AM KQAMG    N
Sbjct: 334 THCEIHPAMILGICASI--------------IPFPDHNQSPRNTYQSAM-KQAMGVYLTN 378

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 379 YLVRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNAI 418


>gi|328859896|gb|EGG09004.1| hypothetical protein MELLADRAFT_47615 [Melampsora larici-populina
            98AG31]
          Length = 1257

 Score =  220 bits (561), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 107/263 (40%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N + R+DT+   L Y Q+P+  ++++    F
Sbjct: 781  IIPFPDHNQSPRNTYQSAMGKQAMGVYLTNFRMRMDTMANILYYPQKPLATTRSMEYLRF 840

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R   YR+     K+      +  
Sbjct: 841  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSFYYRSYMDQEKKAGALQMEEF 900

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  E   R     +  LD DGI+ PG ++    +++ K+ P    S      M T   
Sbjct: 901  EKPSRENTLRLKHGTYEKLDDDGIITPGTRVSGDDIIIGKTAPIPPDSEELGQRMKTHTK 960

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V +  K +    +++VL+++N +    +K+ +R TR PE GDKF+SRHGQKG +G++ 
Sbjct: 961  RDVSMPLKSTENGIIDQVLITTNQDGLKFVKVRIRSTRIPETGDKFASRHGQKGTVGILY 1020

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GICPDII+NPH +
Sbjct: 1021 RQEDMPFTSEGICPDIIINPHAI 1043



 Score =  191 bits (486), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 89/188 (47%), Positives = 122/188 (64%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V +  K +    +++VL+++N +    +K+ +R TR PE GDKF+SRHGQKG +G++ 
Sbjct: 961  RDVSMPLKSTENGIIDQVLITTNQDGLKFVKVRIRSTRIPETGDKFASRHGQKGTVGILY 1020

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GICPDII+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 1021 RQEDMPFTSEGICPDIIINPHAIPSRMTIGHLVECLLSKVSTITGNEGDATPFSEVTVEA 1080

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
            +   L  +GY  +G +I Y+G TG  L A  Y GP YYQ+LKHMV DKIH+R+RGP  +L
Sbjct: 1081 ISSLLKDNGYQSRGLEIMYNGHTGRKLRAQCYLGPTYYQRLKHMVNDKIHSRARGPVQIL 1140

Query: 1363 TRQPTGRR 1370
            TRQP   R
Sbjct: 1141 TRQPVEGR 1148



 Score =  118 bits (296), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 57/150 (38%), Positives = 95/150 (63%), Gaps = 4/150 (2%)

Query: 186 FDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINSQ 244
           F++   ++ +TITN L  ++ TGNW  ++  M+ R GV+QVL+R ++ S L  + R N+ 
Sbjct: 464 FNLNTAVKSNTITNGLKYSLATGNWGDQKKAMQARAGVSQVLNRYTFASTLSHLRRCNTP 523

Query: 245 FEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNI 304
             +  K++ PR L  S WGM+CP++TPEG+ACGLVKNLALM++I+  +    +++ +   
Sbjct: 524 IGRDGKIAKPRQLHNSHWGMVCPAETPEGQACGLVKNLALMSYISVGSPSAPIVEFLEEW 583

Query: 305 GIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
           G+E +  F+ +  +      VFVNG+  G+
Sbjct: 584 GMESLDEFSADMATGTK---VFVNGVWQGV 610



 Score = 87.8 bits (216), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 59/100 (59%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 765 THCEIHPAMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVYLTN 810

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
            + R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 811 FRMRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNAI 850



 Score = 54.7 bits (130), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 14/114 (12%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A + L    + HI +   +   KA +   M+ R++LA  +   LDDRD++G KRL+LAG 
Sbjct: 374 AEEILQKEMLPHISMSEGQQGKKAYFFGYMVHRLLLAALERRDLDDRDHFGKKRLDLAGP 433

Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYGN 555
           LL+ +F  +F++   ++           K  NL+  V    + +G  + L  GN
Sbjct: 434 LLAGLFRMLFRKLTKDVYRHLQKCVEMQKPFNLNTAVKSNTITNGLKYSLATGN 487



 Score = 41.6 bits (96), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 21/87 (24%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTR-----------GSQRVVRSD 389
           + +P + ES        P+E RLR+LTYSAP+ VD+  +            G    +  D
Sbjct: 113 LSRPTMTESDGTVSPMFPNEARLRNLTYSAPLYVDMSKSNKVATGEFDEVTGEPIYISDD 172

Query: 390 ----------LVIGRMPIMLQSSKCVL 406
                     + IG++PIML+S  C+L
Sbjct: 173 DDNPDKNSSQIYIGKVPIMLRSEFCIL 199


>gi|320101550|ref|YP_004177142.1| DNA-directed RNA polymerase subunit B' ;DNA-directed RNA polymerase
            subunit B' [Desulfurococcus mucosus DSM 2162]
 gi|319753902|gb|ADV65660.1| DNA-directed RNA polymerase, subunit B' ;DNA-directed RNA polymerase,
            subunit B' [Desulfurococcus mucosus DSM 2162]
          Length = 1165

 Score =  220 bits (561), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 109/263 (41%), Positives = 162/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++PYP HNQ+PRN YQ AM KQ++G    N Q R+DT  + L Y Q+P+V+++ + +  +
Sbjct: 694  IIPYPEHNQSPRNMYQSAMAKQSLGLYAANFQRRMDTRGHFLHYPQKPLVQTRAMDVIGY 753

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
            ++ PAGQN  +AV++Y+GY++EDALI+NK+S+DRG  R   +R    V  +YP    D I
Sbjct: 754  NERPAGQNMVVAVLTYTGYNMEDALILNKSSVDRGLARSTFFRLYTTVEYKYPGGIQDEI 813

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISM---ATPEY 1090
              P       +    +  L++DGIVAP   +    VL+ K  P   +SA      +T   
Sbjct: 814  TIPSTNIRGYRGQKAYEKLEEDGIVAPETPVTGGDVLIGKISPPRFLSAQEYEVGSTLTR 873

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++  V  +      ++ VL++ +SE   LIK+ +R  R PE+GDKF+SRHGQKGV+GL+V
Sbjct: 874  QDTSVVMRHEEKGVVDTVLITMDSEGNKLIKVRVRDLRIPELGDKFASRHGQKGVVGLLV 933

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             Q DMPF E G+ PD+I+NPH  
Sbjct: 934  PQYDMPFTEEGVVPDLIINPHAF 956



 Score =  199 bits (505), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 96/182 (52%), Positives = 129/182 (70%), Gaps = 7/182 (3%)

Query: 1197 LEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICP 1256
            ++ VL++ +SE   LIK+ +R  R PE+GDKF+SRHGQKGV+GL+V Q DMPF E G+ P
Sbjct: 888  VDTVLITMDSEGNKLIKVRVRDLRIPELGDKFASRHGQKGVVGLLVPQYDMPFTEEGVVP 947

Query: 1257 DIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQG 1316
            D+I+NPH +PSRMTV +L+E +AGKA  +EG   + T F  T + ++Q  + RHGY+  G
Sbjct: 948  DLIINPHAFPSRMTVAQLMESIAGKAAALEGRTFDATPFYKTPIEELQVIIKRHGYSPTG 1007

Query: 1317 KDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPT-------GR 1369
            ++  Y G TGE L+A ++ G VYYQKL HMV DK+HAR+RGP  +LTRQPT       G 
Sbjct: 1008 EEAMYDGRTGELLDAPVFIGVVYYQKLHHMVSDKMHARARGPVQILTRQPTEGRSRAGGL 1067

Query: 1370 RW 1371
            RW
Sbjct: 1068 RW 1069



 Score = 97.8 bits (242), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 79/135 (58%), Gaps = 15/135 (11%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKR 751
           F+D + +G IEYLD +E  +++IA+ E G      TH+EI    +LG+ A I        
Sbjct: 644 FEDLVKQGIIEYLDPDEEENAYIAL-EPGSVGAEHTHMEIWIPAILGITASI-------- 694

Query: 752 FHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTI 811
                 +PYP HNQ+PRN YQ AM KQ++G    N Q R+DT  + L Y Q+P+V+++ +
Sbjct: 695 ------IPYPEHNQSPRNMYQSAMAKQSLGLYAANFQRRMDTRGHFLHYPQKPLVQTRAM 748

Query: 812 RITNFHKLPAGKCQI 826
            +  +++ PAG+  +
Sbjct: 749 DVIGYNERPAGQNMV 763



 Score = 93.6 bits (231), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 52/158 (32%), Positives = 82/158 (51%), Gaps = 5/158 (3%)

Query: 182 KAAQFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRI 241
           K  + D+    +   IT+ L  A+ TGNW        R GV+Q+L R + +S L  + R+
Sbjct: 401 KTRKVDLKMVFKPSIITDRLLHAMATGNWP-----GGRTGVSQLLDRTNMLSTLSHLRRV 455

Query: 242 NSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIM 301
            S   + +     R L G+QWG +CP +TPEG   GLVKNLALMT+++   D+K +  ++
Sbjct: 456 VSPLARGQPHFEARELHGTQWGRMCPFETPEGANIGLVKNLALMTNVSVGVDDKEIELLL 515

Query: 302 YNIGIEHIAMFNGEELSSPGVYLVFVNGILAGITCHHK 339
           Y IG+  +   N  + S  G+  +    + A +    K
Sbjct: 516 YRIGVVPLVSINTGDKSYKGILDIIREDVSAAVELSEK 553



 Score = 45.4 bits (106), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 10/85 (11%)

Query: 456 ARDFLSSTCIAHI---PVINMRFKMKAMYLAVMIRRMV---LALSDPDMLDDRDYYGNKR 509
           A+  L    + HI   P    R + KA+++  MI R++   L    PD   D+D+Y NKR
Sbjct: 313 AQRLLDERLLPHIGTDPSPETRLR-KAVFIGQMISRIIELYLGYRSPD---DKDHYRNKR 368

Query: 510 LELAGSLLSLMFEDVFKRFNSELKE 534
           L+LAG +L+ +       F+ E+KE
Sbjct: 369 LKLAGDMLATLLRAAIMGFSREIKE 393


>gi|134079870|emb|CAK41002.1| unnamed protein product [Aspergillus niger]
 gi|350637591|gb|EHA25948.1| hypothetical protein ASPNIDRAFT_54460 [Aspergillus niger ATCC 1015]
          Length = 1256

 Score =  220 bits (560), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 110/266 (41%), Positives = 167/266 (62%), Gaps = 9/266 (3%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R++T+   L Y Q+P+  ++++    F
Sbjct: 785  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSMEFLRF 844

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR      K       +R 
Sbjct: 845  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMVGLTVVERF 904

Query: 1034 LGPLLEADT---RKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAISMATPE 1089
              P + +DT   RK  Y    LD+DGI+APG ++    +++ K+ P       +   T  
Sbjct: 905  EKP-MRSDTIGMRKGTYDK--LDEDGIIAPGVRVSGEDIIIGKTAPLAPEAEELGQRTKA 961

Query: 1090 YKEVPVS--YKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
            + ++ VS   + +    +++VLVS++++D   +K+ +R T+ P+IGDKF+SRHGQKG IG
Sbjct: 962  HTKLDVSTPLRSTENGIVDQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIG 1021

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            +   QEDMPF   G+CPD+I+NPH +
Sbjct: 1022 ITYRQEDMPFTREGVCPDLIINPHAI 1047



 Score =  185 bits (469), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 84/176 (47%), Positives = 117/176 (66%)

Query: 1197 LEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICP 1256
            +++VLVS++++D   +K+ +R T+ P+IGDKF+SRHGQKG IG+   QEDMPF   G+CP
Sbjct: 979  VDQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRQEDMPFTREGVCP 1038

Query: 1257 DIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQG 1316
            D+I+NPH  PSRMT+  LIE    K   + G   + T F    +  +   L  HGY  +G
Sbjct: 1039 DLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTDVTVDSISRLLREHGYQSRG 1098

Query: 1317 KDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
             ++ Y+G TG  L A ++ GP YYQ+L+HMV DKIHAR+RGP  +LTRQP   R +
Sbjct: 1099 FEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRAR 1154



 Score =  113 bits (283), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 57/144 (39%), Positives = 85/144 (59%), Gaps = 3/144 (2%)

Query: 192 MRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRK 250
           ++  T+T  L  A+ TGNW   ++    + GV+QVLSR +Y S L  + R N+   +  K
Sbjct: 468 IKASTLTGGLKYALATGNWGEQKKAASAKAGVSQVLSRYTYASTLSHLRRTNTPIGRDGK 527

Query: 251 VSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIA 310
           ++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT     + ++  M    +E + 
Sbjct: 528 IAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLE 587

Query: 311 MFNGEELSSPGVYLVFVNGILAGI 334
            F  E   +P    VFVNG+  GI
Sbjct: 588 EF--EPQVTPNATKVFVNGVWVGI 609



 Score = 88.6 bits (218), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LGVCA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 769 THCEIHPSMILGVCASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 814

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R++T+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 815 FDQRMETMANILYYPQKPLATTRSMEFLRFRELPAGQNAI 854



 Score = 51.6 bits (122), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 56/115 (48%), Gaps = 16/115 (13%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMV-LALSDPDMLDDRDYYGNKRLELAG 514
           AR+ +    + HI         KA +L  M+ R++  AL   D +DDRD++G KRL+LAG
Sbjct: 372 AREIMQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRD-VDDRDHFGKKRLDLAG 430

Query: 515 SLLSLMFEDVFKRFNSELK-------ETNLSGVVN-------LVSGWWFELKYGN 555
            LL+ +F  +F R   +L+       ETN    +N       L  G  + L  GN
Sbjct: 431 PLLANLFRVLFTRVTRDLQRYVQRCVETNREIYLNIGIKASTLTGGLKYALATGN 485


>gi|317033268|ref|XP_001395161.2| DNA-directed RNA polymerase II subunit RPB2 [Aspergillus niger CBS
            513.88]
          Length = 1231

 Score =  220 bits (560), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 110/266 (41%), Positives = 167/266 (62%), Gaps = 9/266 (3%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R++T+   L Y Q+P+  ++++    F
Sbjct: 760  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSMEFLRF 819

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR      K       +R 
Sbjct: 820  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMVGLTVVERF 879

Query: 1034 LGPLLEADT---RKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAISMATPE 1089
              P + +DT   RK  Y    LD+DGI+APG ++    +++ K+ P       +   T  
Sbjct: 880  EKP-MRSDTIGMRKGTYDK--LDEDGIIAPGVRVSGEDIIIGKTAPLAPEAEELGQRTKA 936

Query: 1090 YKEVPVS--YKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
            + ++ VS   + +    +++VLVS++++D   +K+ +R T+ P+IGDKF+SRHGQKG IG
Sbjct: 937  HTKLDVSTPLRSTENGIVDQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIG 996

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            +   QEDMPF   G+CPD+I+NPH +
Sbjct: 997  ITYRQEDMPFTREGVCPDLIINPHAI 1022



 Score =  185 bits (469), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 84/176 (47%), Positives = 117/176 (66%)

Query: 1197 LEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICP 1256
            +++VLVS++++D   +K+ +R T+ P+IGDKF+SRHGQKG IG+   QEDMPF   G+CP
Sbjct: 954  VDQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRQEDMPFTREGVCP 1013

Query: 1257 DIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQG 1316
            D+I+NPH  PSRMT+  LIE    K   + G   + T F    +  +   L  HGY  +G
Sbjct: 1014 DLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTDVTVDSISRLLREHGYQSRG 1073

Query: 1317 KDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
             ++ Y+G TG  L A ++ GP YYQ+L+HMV DKIHAR+RGP  +LTRQP   R +
Sbjct: 1074 FEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRAR 1129



 Score =  113 bits (283), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 57/144 (39%), Positives = 85/144 (59%), Gaps = 3/144 (2%)

Query: 192 MRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRK 250
           ++  T+T  L  A+ TGNW   ++    + GV+QVLSR +Y S L  + R N+   +  K
Sbjct: 443 IKASTLTGGLKYALATGNWGEQKKAASAKAGVSQVLSRYTYASTLSHLRRTNTPIGRDGK 502

Query: 251 VSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIA 310
           ++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT     + ++  M    +E + 
Sbjct: 503 IAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLE 562

Query: 311 MFNGEELSSPGVYLVFVNGILAGI 334
            F  E   +P    VFVNG+  GI
Sbjct: 563 EF--EPQVTPNATKVFVNGVWVGI 584



 Score = 88.6 bits (218), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LGVCA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 744 THCEIHPSMILGVCASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 789

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R++T+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 790 FDQRMETMANILYYPQKPLATTRSMEFLRFRELPAGQNAI 829



 Score = 51.6 bits (122), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 56/115 (48%), Gaps = 16/115 (13%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMV-LALSDPDMLDDRDYYGNKRLELAG 514
           AR+ +    + HI         KA +L  M+ R++  AL   D +DDRD++G KRL+LAG
Sbjct: 347 AREIMQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRD-VDDRDHFGKKRLDLAG 405

Query: 515 SLLSLMFEDVFKRFNSELK-------ETNLSGVVN-------LVSGWWFELKYGN 555
            LL+ +F  +F R   +L+       ETN    +N       L  G  + L  GN
Sbjct: 406 PLLANLFRVLFTRVTRDLQRYVQRCVETNREIYLNIGIKASTLTGGLKYALATGN 460



 Score = 48.5 bits (114), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 12/83 (14%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDI--EYTRGSQRVV--RSD------- 389
           + +P + E    T    P E RLR+LTY++P+ + +  +   G +R+V  R D       
Sbjct: 94  LSRPSVTEGDGATTIMLPQEARLRNLTYASPLYLGVTKKIMEGRERLVADRDDDDMAKEE 153

Query: 390 -LVIGRMPIMLQSSKCVLRNKTE 411
            + IG+MPIML+S  C+L++ +E
Sbjct: 154 TVFIGKMPIMLKSKYCILKDLSE 176


>gi|401018|sp|P31814.1|RPOB_THECE RecName: Full=DNA-directed RNA polymerase subunit B
 gi|48140|emb|CAA47722.1| Subunit B of DNA-dependent RNA polymerase [Thermococcus celer]
          Length = 1122

 Score =  220 bits (560), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 114/266 (42%), Positives = 165/266 (62%), Gaps = 8/266 (3%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            LVPYP HN  PRNTY   M KQ++G    N + R+DT  + + Y Q P+V S+ ++   F
Sbjct: 655  LVPYPEHNARPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLMHYPQVPLVNSRIMKAVGF 714

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR- 1032
             + PAGQN  +AV+SY+GY++EDA+IMNKAS++RG  R   +R  +   K+Y     DR 
Sbjct: 715  EERPAGQNFVVAVLSYAGYNMEDAIIMNKASIERGLARSTFFRTYEAEEKRYLGGQTDRF 774

Query: 1033 -ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAIS----MAT 1087
             I  P ++    +  YRH  LD+DGI+ P  ++  + VLV ++ P   +   S    +  
Sbjct: 775  EIPDPTIQGYLGERYYRH--LDEDGIIFPESKVNGKDVLVGRTSPPRFLEEQSGLGGIIL 832

Query: 1088 PEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
             E +E  ++ + S    ++KV+++   +   L+K+  R  R PE GDKF+SRHGQKGVIG
Sbjct: 833  QERRETSLTVRPSETGVVDKVIITETGDGTKLVKVTTRDLRIPEFGDKFASRHGQKGVIG 892

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            LIV QEDMP+ ESGI PD+I+NPHG+
Sbjct: 893  LIVPQEDMPWTESGIVPDLIVNPHGI 918



 Score =  200 bits (509), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 102/207 (49%), Positives = 139/207 (67%), Gaps = 1/207 (0%)

Query: 1164 PDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPE 1223
            P  +    GL G   + E +E  ++ + S    ++KV+++   +   L+K+  R  R PE
Sbjct: 818  PRFLEEQSGLGGII-LQERRETSLTVRPSETGVVDKVIITETGDGTKLVKVTTRDLRIPE 876

Query: 1224 IGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAG 1283
             GDKF+SRHGQKGVIGLIV QEDMP+ ESGI PD+I+NPHG PSRMTVG+LIE + GK  
Sbjct: 877  FGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLIEAIGGKVA 936

Query: 1284 LMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKL 1343
             ++G   +GTAF G     +++EL   G+ + G+++ Y GITG  LEA ++ G +YYQ+L
Sbjct: 937  SLKGRRVDGTAFIGEPEEKLRKELEELGFKHSGREVMYDGITGRRLEADVFVGVIYYQRL 996

Query: 1344 KHMVQDKIHARSRGPRVVLTRQPTGRR 1370
             HMV DK+HARSRGP  VLT+QPT  R
Sbjct: 997  HHMVADKMHARSRGPVQVLTKQPTEGR 1023



 Score =  100 bits (250), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 52/146 (35%), Positives = 84/146 (57%), Gaps = 9/146 (6%)

Query: 188 IVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEK 247
           + N +R D ++  +  A+ TG+W        R GV+Q+L R +YIS L  + R+ S   +
Sbjct: 393 VRNSIRPDVLSERIEHALATGSWP-----GGRTGVSQLLDRTNYISTLSHLRRVTSPLSR 447

Query: 248 TRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIE 307
            +     R L G+ WG +CP++TPEG  CGLVKNLALM+ ITT   E+ + + +  +G+ 
Sbjct: 448 EQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMSQITTGVPEEEVREYLERLGVV 507

Query: 308 HIAMFNGEELSSPGVYLVFVNGILAG 333
            I     E   +P ++ +++NG+L G
Sbjct: 508 PIE----ERRPNPDLWRLYLNGVLVG 529



 Score = 80.5 bits (197), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 48/137 (35%), Positives = 69/137 (50%), Gaps = 25/137 (18%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIA-----VSESGIRPGVTTHLEIAPFTLLGVCAGIELL 746
           + D +  G IEYLD  E  ++ +A     V+E        THLE+ P  +LG+ A     
Sbjct: 605 WSDLVKMGVIEYLDAEEEENALVATWPWEVTEE------HTHLELMPAAILGIPAS---- 654

Query: 747 QYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMV 806
                     LVPYP HN  PRNTY   M KQ++G    N + R+DT  + + Y Q P+V
Sbjct: 655 ----------LVPYPEHNARPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLMHYPQVPLV 704

Query: 807 ESKTIRITNFHKLPAGK 823
            S+ ++   F + PAG+
Sbjct: 705 NSRIMKAVGFEERPAGQ 721



 Score = 45.1 bits (105), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 42/78 (53%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A++ + +  + H+ V     K KA YL +M  R++         DD+D+Y NKRL+LAG 
Sbjct: 293 AQNIIDNNLLPHMGVEEKDRKAKAYYLGMMALRVLELSLGLRGEDDKDHYANKRLKLAGD 352

Query: 516 LLSLMFEDVFKRFNSELK 533
           LL  +F   F +   +++
Sbjct: 353 LLMDLFRVAFGQLVKDMQ 370



 Score = 44.3 bits (103), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 4/66 (6%)

Query: 343 KPEIEESFNYTRQTTPHECRLRDLTYSAPITVD-IEYTRG-SQRVVRSDLVIGRMPIMLQ 400
           +PE +E+    +   P + R+R+LTYSAPI ++ I    G SQ  V  ++ IG +PIML+
Sbjct: 73  EPEFQEAQGQRKPLYPMDARIRNLTYSAPIYLELIPVVNGVSQEAV--EVRIGELPIMLK 130

Query: 401 SSKCVL 406
           S  C L
Sbjct: 131 SKACRL 136


>gi|358374560|dbj|GAA91151.1| DNA-directed RNA polymerase II 138 kDa polypeptide [Aspergillus
            kawachii IFO 4308]
          Length = 1256

 Score =  220 bits (560), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 110/266 (41%), Positives = 167/266 (62%), Gaps = 9/266 (3%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R++T+   L Y Q+P+  ++++    F
Sbjct: 785  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSMEFLRF 844

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR      K       +R 
Sbjct: 845  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMVGLTVVERF 904

Query: 1034 LGPLLEADT---RKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAISMATPE 1089
              P + +DT   RK  Y    LD+DGI+APG ++    +++ K+ P       +   T  
Sbjct: 905  EKP-MRSDTIGMRKGTYDK--LDEDGIIAPGVRVSGEDIIIGKTAPLAPEAEELGQRTKA 961

Query: 1090 YKEVPVS--YKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
            + ++ VS   + +    +++VLVS++++D   +K+ +R T+ P+IGDKF+SRHGQKG IG
Sbjct: 962  HTKLDVSTPLRSTENGIVDQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIG 1021

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            +   QEDMPF   G+CPD+I+NPH +
Sbjct: 1022 ITYRQEDMPFTREGVCPDLIINPHAI 1047



 Score =  185 bits (469), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 84/176 (47%), Positives = 117/176 (66%)

Query: 1197 LEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICP 1256
            +++VLVS++++D   +K+ +R T+ P+IGDKF+SRHGQKG IG+   QEDMPF   G+CP
Sbjct: 979  VDQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRQEDMPFTREGVCP 1038

Query: 1257 DIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQG 1316
            D+I+NPH  PSRMT+  LIE    K   + G   + T F    +  +   L  HGY  +G
Sbjct: 1039 DLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTDVTVDSISRLLREHGYQSRG 1098

Query: 1317 KDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
             ++ Y+G TG  L A ++ GP YYQ+L+HMV DKIHAR+RGP  +LTRQP   R +
Sbjct: 1099 FEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRAR 1154



 Score =  113 bits (282), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 57/144 (39%), Positives = 85/144 (59%), Gaps = 3/144 (2%)

Query: 192 MRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRK 250
           ++  T+T  L  A+ TGNW   ++    + GV+QVLSR +Y S L  + R N+   +  K
Sbjct: 468 IKASTLTGGLKYALATGNWGEQKKAASAKAGVSQVLSRYTYASTLSHLRRTNTPIGRDGK 527

Query: 251 VSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIA 310
           ++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT     + ++  M    +E + 
Sbjct: 528 IAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLE 587

Query: 311 MFNGEELSSPGVYLVFVNGILAGI 334
            F  E   +P    VFVNG+  GI
Sbjct: 588 EF--EPQVTPNATKVFVNGVWVGI 609



 Score = 88.6 bits (218), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LGVCA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 769 THCEIHPSMILGVCASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 814

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R++T+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 815 FDQRMETMANILYYPQKPLATTRSMEFLRFRELPAGQNAI 854



 Score = 51.6 bits (122), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 56/115 (48%), Gaps = 16/115 (13%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMV-LALSDPDMLDDRDYYGNKRLELAG 514
           AR+ +    + HI         KA +L  M+ R++  AL   D +DDRD++G KRL+LAG
Sbjct: 372 AREIMQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRD-VDDRDHFGKKRLDLAG 430

Query: 515 SLLSLMFEDVFKRFNSELK-------ETNLSGVVN-------LVSGWWFELKYGN 555
            LL+ +F  +F R   +L+       ETN    +N       L  G  + L  GN
Sbjct: 431 PLLANLFRVLFTRVTRDLQRYVQRCVETNREIYLNIGIKASTLTGGLKYALATGN 485


>gi|14591329|ref|NP_143407.1| DNA-directed RNA polymerase subunit B [Pyrococcus horikoshii OT3]
 gi|3257974|dbj|BAA30657.1| 1117aa long hypothetical DNA-directed RNA polymerase subunit B
            [Pyrococcus horikoshii OT3]
          Length = 1117

 Score =  220 bits (560), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 113/267 (42%), Positives = 167/267 (62%), Gaps = 11/267 (4%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            L+PYP HN APRNTY   M KQ++G    N + R+DT  + L Y Q P+V S+ ++   +
Sbjct: 651  LIPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGY 710

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR- 1032
               PAGQN  +AV++Y GY++EDA+I+NKAS++RG  R   +R  +   K+Y     DR 
Sbjct: 711  EDRPAGQNFVVAVLAYHGYNMEDAIIINKASIERGLARSTFFRTYEAEEKKYLGGQTDRF 770

Query: 1033 -ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMP-----TISVSAISMA 1086
             I  P +     +  YRH  LD+DG++ P  ++  + VL+ ++ P        + A+S+ 
Sbjct: 771  EIPAPTVRGYRGEKYYRH--LDEDGLIFPESKVEGKDVLIGRTSPPRFLEERGLGAVSLQ 828

Query: 1087 TPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVI 1146
              E +E  V+ + S    ++KV+++   +   L+K+ +R  R PEIGDKF+SRHGQKGVI
Sbjct: 829  --ERRETSVAVRPSEKGIVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVI 886

Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGL 1173
            GLIV QEDMP+ ESGI PD+I+NPHG+
Sbjct: 887  GLIVPQEDMPWTESGIVPDLIVNPHGI 913



 Score =  204 bits (519), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 105/208 (50%), Positives = 141/208 (67%), Gaps = 1/208 (0%)

Query: 1163 CPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRP 1222
             P   +   GL G   + E +E  V+ + S    ++KV+++   +   L+K+ +R  R P
Sbjct: 812  SPPRFLEERGL-GAVSLQERRETSVAVRPSEKGIVDKVIITETGDGTKLVKVTVRDLRIP 870

Query: 1223 EIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKA 1282
            EIGDKF+SRHGQKGVIGLIV QEDMP+ ESGI PD+I+NPHG PSRMTVG+L+E + GK 
Sbjct: 871  EIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKV 930

Query: 1283 GLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQK 1342
              ++G   +GTAF G     +++EL   G+ + G++I Y GITG+  EA I+ G +YYQ+
Sbjct: 931  AALKGRRVDGTAFIGEPEEKLRKELEELGFKHTGREIMYDGITGKRFEADIFIGIIYYQR 990

Query: 1343 LKHMVQDKIHARSRGPRVVLTRQPTGRR 1370
            L HMV DKIHARSRGP  VLT+QPT  R
Sbjct: 991  LHHMVADKIHARSRGPVQVLTKQPTEGR 1018



 Score =  104 bits (260), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 56/156 (35%), Positives = 87/156 (55%), Gaps = 9/156 (5%)

Query: 188 IVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEK 247
           I N +R D +T  +  A+ TG W        R GV+Q+L R +Y+S L  + R+ S  ++
Sbjct: 391 IRNSIRPDVLTERIEHALATGAWP-----GGRTGVSQLLDRTNYVSTLSHLRRVTSPLDR 445

Query: 248 TRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIE 307
            +     R L G+ WG +CP++TPEG  CGLVKNLALM  ITT   E+ + + + ++GI 
Sbjct: 446 EQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITTAVPEEEVREYLMSLGIV 505

Query: 308 HIAMFNGEELSSPGVYLVFVNGILAGITCHHKEVCK 343
            I +       SP ++ V++NG+L G     K + +
Sbjct: 506 PIEVRR----PSPELWRVYLNGVLIGTVEDGKALVE 537



 Score = 82.8 bits (203), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/136 (34%), Positives = 71/136 (52%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G  ++ D +  G IEYLD  E  ++++A+    +     THLE+ P  +LG+ A      
Sbjct: 597 GRLKWSDLVRMGVIEYLDAEEEENAYVAMWPWEVTKE-HTHLELMPAAILGLPAS----- 650

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYP HN APRNTY   M KQ++G    N + R+DT  + L Y Q P+V 
Sbjct: 651 ---------LIPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLLHYPQIPLVN 701

Query: 808 SKTIRITNFHKLPAGK 823
           S+ ++   +   PAG+
Sbjct: 702 SRIMKAVGYEDRPAGQ 717



 Score = 43.5 bits (101), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 2/67 (2%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVD-IEYTRGSQRVVRSDLVIGRMPIML 399
           V +PE +E     +   P + R+R+LTYSAP+ ++ I   RG ++    ++ IG +PIML
Sbjct: 69  VGEPEFQEPHGQRKPLYPMDARIRNLTYSAPLYLEMIPVIRGIEQDP-VEVRIGELPIML 127

Query: 400 QSSKCVL 406
           +S  C L
Sbjct: 128 KSKACRL 134



 Score = 43.1 bits (100), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 37/59 (62%), Gaps = 1/59 (1%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           D W ++ S+ +EKGLV+ H+DS++ FI   +++++     I  D+ P F +K+  I VG
Sbjct: 13  DLWIVMESYWEEKGLVRQHLDSYNAFIERGLQEVVDEFGGIKPDI-PDFEVKFGKIRVG 70



 Score = 42.4 bits (98), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 2/79 (2%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMV-LALSDPDMLDDRDYYGNKRLELAG 514
           A   + +  + H+ V       KA YL +M  +++ L+L   D  DD+D+Y NKRL LAG
Sbjct: 291 AEYVIDNNLLPHMGVTPEDRIRKAYYLGMMALKVIELSLGKRDE-DDKDHYANKRLRLAG 349

Query: 515 SLLSLMFEDVFKRFNSELK 533
            LL  +F   F +   +++
Sbjct: 350 DLLKDLFRVAFSQLIKDIQ 368


>gi|392867393|gb|EAS29377.2| DNA-directed RNA polymerase II subunit RPB2 [Coccidioides immitis RS]
          Length = 1258

 Score =  220 bits (560), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 113/286 (39%), Positives = 170/286 (59%), Gaps = 3/286 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R++T+   L Y Q+P+  ++++    F
Sbjct: 787  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSMEFLKF 846

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR      K       +R 
Sbjct: 847  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMIGLTVVERF 906

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS-AISMATPEYKE 1092
              P+     R     +  +D DGIVAPG ++    +++ K+ P    S  +   T ++ +
Sbjct: 907  EKPMRSDTLRMKHGTYDKVDDDGIVAPGVRVSGEDIIIGKTAPLAPESEELGQRTKQHTK 966

Query: 1093 VPVS--YKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            + VS   + +    +++VLVS+++ED   +K+ +R T+ P+IGDKF+SRHGQKG IG+  
Sbjct: 967  LDVSTPLRSTESGIVDQVLVSTSNEDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGVTF 1026

Query: 1151 EQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSY 1196
             QEDMPF   GI PD+I+NPH +     I    E  +S   S+  Y
Sbjct: 1027 RQEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGY 1072



 Score =  184 bits (467), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 88/189 (46%), Positives = 120/189 (63%)

Query: 1184 EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVE 1243
            +V    + +    +++VLVS+++ED   +K+ +R T+ P+IGDKF+SRHGQKG IG+   
Sbjct: 968  DVSTPLRSTESGIVDQVLVSTSNEDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGVTFR 1027

Query: 1244 QEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDV 1303
            QEDMPF   GI PD+I+NPH  PSRMT+  LIE    K   + G   + T F    +  V
Sbjct: 1028 QEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGYEGDATPFTDVTVDSV 1087

Query: 1304 QEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLT 1363
               L  HGY  +G ++ Y+G TG  L A I+ GP YYQ+L+HMV DKIHAR+RGP  +LT
Sbjct: 1088 SSLLREHGYQSRGFEVMYNGHTGRKLVAQIFLGPTYYQRLRHMVDDKIHARARGPTQILT 1147

Query: 1364 RQPTGRRWK 1372
            RQP   R +
Sbjct: 1148 RQPVEGRAR 1156



 Score =  111 bits (277), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 55/144 (38%), Positives = 85/144 (59%), Gaps = 3/144 (2%)

Query: 192 MRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRK 250
           ++  T+T  L  A+ TGNW   ++    + GV+QVL+R +Y S L  + R N+   +  K
Sbjct: 471 VKASTLTGGLKYALATGNWGEQKKAASSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGK 530

Query: 251 VSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIA 310
           ++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT     + ++  M    +E + 
Sbjct: 531 IAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLE 590

Query: 311 MFNGEELSSPGVYLVFVNGILAGI 334
            F  E   SP    +FVNG+  G+
Sbjct: 591 EF--EPQVSPNSTKIFVNGVWVGV 612



 Score = 88.6 bits (218), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/100 (42%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 771 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 816

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R++T+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 817 FDQRMETMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 856



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 2/78 (2%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMV-LALSDPDMLDDRDYYGNKRLELAG 514
           ARD +    + HI         KA +L  M+ +++  AL   D +DDRD++G KRL+LAG
Sbjct: 375 ARDIIQKEFLPHISQSEGSETRKAFFLGYMVHKLLQCALGRRD-VDDRDHFGKKRLDLAG 433

Query: 515 SLLSLMFEDVFKRFNSEL 532
            LL+ +F  +F R   +L
Sbjct: 434 PLLANLFRVLFMRLTKDL 451


>gi|303315773|ref|XP_003067891.1| DNA-directed RNA polymerase II, putative [Coccidioides posadasii C735
            delta SOWgp]
 gi|240107567|gb|EER25746.1| DNA-directed RNA polymerase II, putative [Coccidioides posadasii C735
            delta SOWgp]
          Length = 1258

 Score =  220 bits (560), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 113/286 (39%), Positives = 170/286 (59%), Gaps = 3/286 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R++T+   L Y Q+P+  ++++    F
Sbjct: 787  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSMEFLKF 846

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR      K       +R 
Sbjct: 847  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMIGLTVVERF 906

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS-AISMATPEYKE 1092
              P+     R     +  +D DGIVAPG ++    +++ K+ P    S  +   T ++ +
Sbjct: 907  EKPMRSDTLRMKHGTYDKVDDDGIVAPGVRVSGEDIIIGKTAPLAPESEELGQRTKQHTK 966

Query: 1093 VPVS--YKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            + VS   + +    +++VLVS+++ED   +K+ +R T+ P+IGDKF+SRHGQKG IG+  
Sbjct: 967  LDVSTPLRSTESGIVDQVLVSTSNEDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGVTF 1026

Query: 1151 EQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSY 1196
             QEDMPF   GI PD+I+NPH +     I    E  +S   S+  Y
Sbjct: 1027 RQEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGY 1072



 Score =  184 bits (467), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 88/189 (46%), Positives = 120/189 (63%)

Query: 1184 EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVE 1243
            +V    + +    +++VLVS+++ED   +K+ +R T+ P+IGDKF+SRHGQKG IG+   
Sbjct: 968  DVSTPLRSTESGIVDQVLVSTSNEDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGVTFR 1027

Query: 1244 QEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDV 1303
            QEDMPF   GI PD+I+NPH  PSRMT+  LIE    K   + G   + T F    +  V
Sbjct: 1028 QEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGYEGDATPFTDVTVDSV 1087

Query: 1304 QEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLT 1363
               L  HGY  +G ++ Y+G TG  L A I+ GP YYQ+L+HMV DKIHAR+RGP  +LT
Sbjct: 1088 SSLLREHGYQSRGFEVMYNGHTGRKLVAQIFLGPTYYQRLRHMVDDKIHARARGPTQILT 1147

Query: 1364 RQPTGRRWK 1372
            RQP   R +
Sbjct: 1148 RQPVEGRAR 1156



 Score =  111 bits (277), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 55/144 (38%), Positives = 85/144 (59%), Gaps = 3/144 (2%)

Query: 192 MRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRK 250
           ++  T+T  L  A+ TGNW   ++    + GV+QVL+R +Y S L  + R N+   +  K
Sbjct: 471 VKASTLTGGLKYALATGNWGEQKKAASSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGK 530

Query: 251 VSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIA 310
           ++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT     + ++  M    +E + 
Sbjct: 531 IAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLE 590

Query: 311 MFNGEELSSPGVYLVFVNGILAGI 334
            F  E   SP    +FVNG+  G+
Sbjct: 591 EF--EPQVSPNSTKIFVNGVWVGV 612



 Score = 88.6 bits (218), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/100 (42%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 771 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 816

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R++T+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 817 FDQRMETMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 856



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 2/78 (2%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMV-LALSDPDMLDDRDYYGNKRLELAG 514
           ARD +    + HI         KA +L  M+ +++  AL   D +DDRD++G KRL+LAG
Sbjct: 375 ARDIIQKEFLPHISQSEGSETRKAFFLGYMVHKLLQCALGRRD-VDDRDHFGKKRLDLAG 433

Query: 515 SLLSLMFEDVFKRFNSEL 532
            LL+ +F  +F R   +L
Sbjct: 434 PLLANLFRVLFMRLTKDL 451


>gi|94410930|gb|ABF18584.1| RNA polymerase II second largest subunit, partial [Hygrocybe miniata
            f. longipes]
          Length = 670

 Score =  219 bits (559), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 107/263 (40%), Positives = 162/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 325  IIPFPDHNQSPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKF 384

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 385  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEF 444

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  E   R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 445  EKPTRENTLRMKHGSYEKLEDDGLIAPGTNVIGEDIIIGKTAPIPPDSEELGQRTRTHTR 504

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++N++D   +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 505  RDVSTPLKSTESGIVDQVLITTNADDQKFVKIRVRATRIPQIGDKFASRHGQKGTIGITY 564

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 565  RQEDMPFTAEGIVPDIIINPHAI 587



 Score =  164 bits (415), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 77/165 (46%), Positives = 106/165 (64%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++N++D   +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 505  RDVSTPLKSTESGIVDQVLITTNADDQKFVKIRVRATRIPQIGDKFASRHGQKGTIGITY 564

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 565  RQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVES 624

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMV 1347
            V   L + GY  +G ++ Y G TG  L+A IY GP YYQ+LKHMV
Sbjct: 625  VSTFLRQKGYQSRGLEVMYHGHTGRKLQAQIYLGPTYYQRLKHMV 669



 Score =  111 bits (277), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 92/151 (60%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 2   EFNLALAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT 61

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM  I+  +    +++ +  
Sbjct: 62  PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEE 121

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E  ++      S+P    VFVNG+  G+
Sbjct: 122 WGLE--SLEENAHSSTPCTK-VFVNGVWMGV 149



 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/121 (38%), Positives = 65/121 (53%), Gaps = 14/121 (11%)

Query: 706 VNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQ 765
            N+G        ++GI     TH EI P  +LG+CA I              +P+P HNQ
Sbjct: 288 ANDGEFDPAVRLKAGINTHTWTHCEIHPSMILGICASI--------------IPFPDHNQ 333

Query: 766 APRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQ 825
           +PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  
Sbjct: 334 SPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNA 393

Query: 826 I 826
           I
Sbjct: 394 I 394


>gi|320031539|gb|EFW13500.1| DNA-dependent RNA polymerase II RPB140 [Coccidioides posadasii str.
            Silveira]
          Length = 1205

 Score =  219 bits (559), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 113/286 (39%), Positives = 170/286 (59%), Gaps = 3/286 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R++T+   L Y Q+P+  ++++    F
Sbjct: 787  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSMEFLKF 846

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR      K       +R 
Sbjct: 847  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMIGLTVVERF 906

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS-AISMATPEYKE 1092
              P+     R     +  +D DGIVAPG ++    +++ K+ P    S  +   T ++ +
Sbjct: 907  EKPMRSDTLRMKHGTYDKVDDDGIVAPGVRVSGEDIIIGKTAPLAPESEELGQRTKQHTK 966

Query: 1093 VPVS--YKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            + VS   + +    +++VLVS+++ED   +K+ +R T+ P+IGDKF+SRHGQKG IG+  
Sbjct: 967  LDVSTPLRSTESGIVDQVLVSTSNEDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGVTF 1026

Query: 1151 EQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSY 1196
             QEDMPF   GI PD+I+NPH +     I    E  +S   S+  Y
Sbjct: 1027 RQEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGY 1072



 Score =  184 bits (466), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 88/189 (46%), Positives = 120/189 (63%)

Query: 1184 EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVE 1243
            +V    + +    +++VLVS+++ED   +K+ +R T+ P+IGDKF+SRHGQKG IG+   
Sbjct: 968  DVSTPLRSTESGIVDQVLVSTSNEDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGVTFR 1027

Query: 1244 QEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDV 1303
            QEDMPF   GI PD+I+NPH  PSRMT+  LIE    K   + G   + T F    +  V
Sbjct: 1028 QEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGYEGDATPFTDVTVDSV 1087

Query: 1304 QEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLT 1363
               L  HGY  +G ++ Y+G TG  L A I+ GP YYQ+L+HMV DKIHAR+RGP  +LT
Sbjct: 1088 SSLLREHGYQSRGFEVMYNGHTGRKLVAQIFLGPTYYQRLRHMVDDKIHARARGPTQILT 1147

Query: 1364 RQPTGRRWK 1372
            RQP   R +
Sbjct: 1148 RQPVEGRAR 1156



 Score =  111 bits (277), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 55/144 (38%), Positives = 85/144 (59%), Gaps = 3/144 (2%)

Query: 192 MRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRK 250
           ++  T+T  L  A+ TGNW   ++    + GV+QVL+R +Y S L  + R N+   +  K
Sbjct: 471 VKASTLTGGLKYALATGNWGEQKKAASSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGK 530

Query: 251 VSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIA 310
           ++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT     + ++  M    +E + 
Sbjct: 531 IAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLE 590

Query: 311 MFNGEELSSPGVYLVFVNGILAGI 334
            F  E   SP    +FVNG+  G+
Sbjct: 591 EF--EPQVSPNSTKIFVNGVWVGV 612



 Score = 88.6 bits (218), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/100 (42%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 771 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 816

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R++T+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 817 FDQRMETMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 856



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 2/78 (2%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMV-LALSDPDMLDDRDYYGNKRLELAG 514
           ARD +    + HI         KA +L  M+ +++  AL   D +DDRD++G KRL+LAG
Sbjct: 375 ARDIIQKEFLPHISQSEGSETRKAFFLGYMVHKLLQCALGRRD-VDDRDHFGKKRLDLAG 433

Query: 515 SLLSLMFEDVFKRFNSEL 532
            LL+ +F  +F R   +L
Sbjct: 434 PLLANLFRVLFMRLTKDL 451


>gi|113957834|gb|ABI49125.1| RNA polymerase II second largest subunit [Megalospora tuberculosa]
          Length = 718

 Score =  219 bits (559), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 115/287 (40%), Positives = 167/287 (58%), Gaps = 5/287 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 370  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDERMDTMANILYYPQKPLATTRSMEFLKF 429

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR      K+   Q  +  
Sbjct: 430  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYVNTEKRVGMQVLESF 489

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPE---- 1089
              PL     +     +  LD DG+VAPG ++    V++ K+ P I+  A  M        
Sbjct: 490  EKPLRSETLKLKHGTYDKLDNDGLVAPGVRVSGDDVIIGKTTP-IAPDAEEMGQRTKAHI 548

Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             K+     + +    +++VL+S+NSE    +K+ +R T+ P+IGDKF+SRHGQKG IG+ 
Sbjct: 549  KKDASTPLRSTENGIVDRVLLSTNSEGLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGIT 608

Query: 1150 VEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSY 1196
              QEDMPF   G+ PDII+NPH +     I    E  +S   S+  Y
Sbjct: 609  YRQEDMPFTSEGMVPDIIINPHAIPSRMTIAHLIECQLSKVSSLRGY 655



 Score =  157 bits (398), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 74/155 (47%), Positives = 100/155 (64%)

Query: 1197 LEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICP 1256
            +++VL+S+NSE    +K+ +R T+ P+IGDKF+SRHGQKG IG+   QEDMPF   G+ P
Sbjct: 564  VDRVLLSTNSEGLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGMVP 623

Query: 1257 DIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQG 1316
            DII+NPH  PSRMT+  LIE    K   + G   + T F    +  V   L  HGY  +G
Sbjct: 624  DIIINPHAIPSRMTIAHLIECQLSKVSSLRGYEGDATPFTEITVDSVSNLLREHGYQSRG 683

Query: 1317 KDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKI 1351
             ++ Y+G TG  L A ++ GP YYQ+L+HMV DKI
Sbjct: 684  FEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKI 718



 Score =  116 bits (290), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/186 (34%), Positives = 108/186 (58%), Gaps = 11/186 (5%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++Q+T+T+ L  ++ TGNW   ++    + GV+QVL+R ++ S L  + R N+
Sbjct: 46  EFNLTLGVKQNTLTSGLKYSLATGNWGEQKKAAQSKAGVSQVLNRYTFASTLSHLRRTNT 105

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM +I+  +  + ++  +  
Sbjct: 106 PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYISVGSPAEPIVDYLIQ 165

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTT--PHEC 361
            G+E +  +  E   SP    VFVNG+  G+  HH       +  +    R+T   PHE 
Sbjct: 166 RGMEILEEY--EPTRSPNATKVFVNGVWVGV--HHDPAL---LVSNVQELRRTNIIPHEA 218

Query: 362 RL-RDL 366
            L RD+
Sbjct: 219 SLVRDI 224



 Score = 90.5 bits (223), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 354 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 399

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 400 YDERMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 439



 Score = 43.5 bits (101), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 14/70 (20%)

Query: 500 DDRDYYGNKRLELAGSLLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVS 545
           DDRD++G KRL+LAG LL+ +F  +F + + ++           +E NL+  V    L S
Sbjct: 1   DDRDHFGKKRLDLAGPLLATLFRTLFSKLSKDIYKYLQKCVESNREFNLTLGVKQNTLTS 60

Query: 546 GWWFELKYGN 555
           G  + L  GN
Sbjct: 61  GLKYSLATGN 70


>gi|302780123|ref|XP_002971836.1| hypothetical protein SELMODRAFT_148107 [Selaginella moellendorffii]
 gi|300160135|gb|EFJ26753.1| hypothetical protein SELMODRAFT_148107 [Selaginella moellendorffii]
          Length = 1178

 Score =  219 bits (559), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 110/261 (42%), Positives = 160/261 (61%), Gaps = 1/261 (0%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 705  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHF 764

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R + YR+ +   K+      +  
Sbjct: 765  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSIFYRSYRDEEKKAGTLVKEEF 824

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYK-E 1092
              P  E  T      +  LD DGI  PG ++    V++ K+ P +     + A    K +
Sbjct: 825  ERPNRETTTGMRHGSYDKLDDDGIAPPGTRVSGEDVIIGKTTPLVQDETGTQAQRYSKRD 884

Query: 1093 VPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQ 1152
                 + S    +++VL+++N++    +K  +R  R P+IGDKFSSRHGQKG IG+   Q
Sbjct: 885  QSTCLRHSESGMIDQVLLTTNADGLRFVKTRVRSIRIPQIGDKFSSRHGQKGTIGMTYTQ 944

Query: 1153 EDMPFNESGICPDIIMNPHGL 1173
            EDMPF + GI PDII+NPH +
Sbjct: 945  EDMPFTQEGITPDIIVNPHAI 965



 Score =  182 bits (463), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 85/174 (48%), Positives = 116/174 (66%)

Query: 1197 LEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICP 1256
            +++VL+++N++    +K  +R  R P+IGDKFSSRHGQKG IG+   QEDMPF + GI P
Sbjct: 897  IDQVLLTTNADGLRFVKTRVRSIRIPQIGDKFSSRHGQKGTIGMTYTQEDMPFTQEGITP 956

Query: 1257 DIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQG 1316
            DII+NPH  PSRMT+G+LIE + GK   + G   + T F    + ++ + L +  Y  +G
Sbjct: 957  DIIVNPHAIPSRMTIGQLIECIMGKVAALMGKEGDATPFTDVTVDNISKALHKCNYQLRG 1016

Query: 1317 KDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRR 1370
             +  Y+G TG  L A I+ GP YYQ+LKHMV DKIH+R RGP  +LTRQP   R
Sbjct: 1017 FETMYNGHTGRRLSAMIFIGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGR 1070



 Score =  112 bits (281), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/160 (40%), Positives = 93/160 (58%), Gaps = 12/160 (7%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQ 244
           + ++   ++  TIT+ L  ++ TGNW        R GV+QVL+RL+Y S L  + R+NS 
Sbjct: 420 EVNLAYAVKAKTITSGLKYSLATGNWGQANSGNARAGVSQVLNRLTYASTLSHLRRLNSP 479

Query: 245 FEKT-RKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
             +  R ++ PR L  S WGM+CP++TPEG+ACGLVKNLALM +IT  +    +L     
Sbjct: 480 IGREGRLLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMAYITVGSAANPIL----- 534

Query: 304 IGIEHIAMFNGEELSS---PGVYLVFVNGILAGITCHHKE 340
           + +E  +  N EE+S    P    +FVNG   GI   H+E
Sbjct: 535 VFLEEWSTENFEEISPAVIPNATKIFVNGAWVGI---HRE 571



 Score = 98.2 bits (243), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/171 (35%), Positives = 84/171 (49%), Gaps = 39/171 (22%)

Query: 677 RPTFLNMHQFLGFKRFD---------------DFLYEGKIEYLDVNEGNDSHIAVSESGI 721
           RP F+   Q L  K+ D               + + +G IEY+D  E   + I+++ S +
Sbjct: 614 RPLFIVEKQRLLIKKSDIRALQQKEAGENGWHELVSKGFIEYVDTEEEETTMISMTISDL 673

Query: 722 ----------RPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTY 771
                          TH EI P  +LGVC  I              +P+P HNQ+PRNTY
Sbjct: 674 VNARLNPEEAYSDTYTHCEIHPSMILGVCGSI--------------IPFPDHNQSPRNTY 719

Query: 772 QCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAG 822
           Q AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F +LPAG
Sbjct: 720 QSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG 770



 Score = 60.5 bits (145), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 14/114 (12%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A+D L    + H+ V       KA +   +I R++L        DDRD+YGNKRL+LAG 
Sbjct: 331 AKDILQKEMLPHVGVGEYCETKKAYFFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGP 390

Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYGN 555
           LL  +F  +F++   ++           KE NL+  V    + SG  + L  GN
Sbjct: 391 LLGSLFRQLFRKLTKDVRAYLQKCVDNGKEVNLAYAVKAKTITSGLKYSLATGN 444



 Score = 45.8 bits (107), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 45/80 (56%), Gaps = 9/80 (11%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVD-IEY-TR----GSQRVVRSDL---V 391
           + KP + ES   T    P   RLR+LTYSAP+  D I+Y TR    G +   + +L    
Sbjct: 82  LSKPMMTESDGETATLFPKAARLRNLTYSAPLYADIIKYVTRKGEDGEEDTEQEELPKVF 141

Query: 392 IGRMPIMLQSSKCVLRNKTE 411
           IG++PIML+SS C L   ++
Sbjct: 142 IGKVPIMLRSSYCTLYQNSD 161


>gi|119177838|ref|XP_001240650.1| hypothetical protein CIMG_07813 [Coccidioides immitis RS]
          Length = 1152

 Score =  219 bits (559), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 113/286 (39%), Positives = 170/286 (59%), Gaps = 3/286 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R++T+   L Y Q+P+  ++++    F
Sbjct: 734  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSMEFLKF 793

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR      K       +R 
Sbjct: 794  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMIGLTVVERF 853

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS-AISMATPEYKE 1092
              P+     R     +  +D DGIVAPG ++    +++ K+ P    S  +   T ++ +
Sbjct: 854  EKPMRSDTLRMKHGTYDKVDDDGIVAPGVRVSGEDIIIGKTAPLAPESEELGQRTKQHTK 913

Query: 1093 VPVS--YKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            + VS   + +    +++VLVS+++ED   +K+ +R T+ P+IGDKF+SRHGQKG IG+  
Sbjct: 914  LDVSTPLRSTESGIVDQVLVSTSNEDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGVTF 973

Query: 1151 EQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSY 1196
             QEDMPF   GI PD+I+NPH +     I    E  +S   S+  Y
Sbjct: 974  RQEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGY 1019



 Score =  184 bits (467), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 88/189 (46%), Positives = 120/189 (63%)

Query: 1184 EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVE 1243
            +V    + +    +++VLVS+++ED   +K+ +R T+ P+IGDKF+SRHGQKG IG+   
Sbjct: 915  DVSTPLRSTESGIVDQVLVSTSNEDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGVTFR 974

Query: 1244 QEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDV 1303
            QEDMPF   GI PD+I+NPH  PSRMT+  LIE    K   + G   + T F    +  V
Sbjct: 975  QEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGYEGDATPFTDVTVDSV 1034

Query: 1304 QEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLT 1363
               L  HGY  +G ++ Y+G TG  L A I+ GP YYQ+L+HMV DKIHAR+RGP  +LT
Sbjct: 1035 SSLLREHGYQSRGFEVMYNGHTGRKLVAQIFLGPTYYQRLRHMVDDKIHARARGPTQILT 1094

Query: 1364 RQPTGRRWK 1372
            RQP   R +
Sbjct: 1095 RQPVEGRAR 1103



 Score =  111 bits (277), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 55/144 (38%), Positives = 85/144 (59%), Gaps = 3/144 (2%)

Query: 192 MRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRK 250
           ++  T+T  L  A+ TGNW   ++    + GV+QVL+R +Y S L  + R N+   +  K
Sbjct: 418 VKASTLTGGLKYALATGNWGEQKKAASSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGK 477

Query: 251 VSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIA 310
           ++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT     + ++  M    +E + 
Sbjct: 478 IAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLE 537

Query: 311 MFNGEELSSPGVYLVFVNGILAGI 334
            F  E   SP    +FVNG+  G+
Sbjct: 538 EF--EPQVSPNSTKIFVNGVWVGV 559



 Score = 88.2 bits (217), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/100 (42%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 718 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 763

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R++T+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 764 FDQRMETMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 803



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 55/115 (47%), Gaps = 16/115 (13%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMV-LALSDPDMLDDRDYYGNKRLELAG 514
           ARD +    + HI         KA +L  M+ +++  AL   D +DDRD++G KRL+LAG
Sbjct: 322 ARDIIQKEFLPHISQSEGSETRKAFFLGYMVHKLLQCALGRRD-VDDRDHFGKKRLDLAG 380

Query: 515 SLLSLMFEDVFKRFNSELK-------ETNLSGVVN-------LVSGWWFELKYGN 555
            LL+ +F  +F R   +L        ETN    +N       L  G  + L  GN
Sbjct: 381 PLLANLFRVLFMRLTKDLYKYVQRCVETNRQLYLNIGVKASTLTGGLKYALATGN 435


>gi|57641018|ref|YP_183496.1| DNA-directed RNA polymerase subunit B [Thermococcus kodakarensis
            KOD1]
 gi|57159342|dbj|BAD85272.1| DNA-directed RNA polymerase, subunit B [Thermococcus kodakarensis
            KOD1]
          Length = 1123

 Score =  219 bits (558), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 114/266 (42%), Positives = 165/266 (62%), Gaps = 8/266 (3%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            LVPYP HN APRNTY   M KQ++G    N + R+DT  + + Y Q P+V S+ ++   F
Sbjct: 656  LVPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLMHYPQVPLVNSRIMKAVGF 715

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHD-- 1031
               PAGQN  +AV+SY GY++EDA+I+NKAS++RG  R   +R  +   K+Y     D  
Sbjct: 716  EDRPAGQNFVVAVLSYHGYNMEDAVIINKASIERGLARSTFFRTYEAEEKRYLGGQKDNF 775

Query: 1032 RILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISV----SAISMAT 1087
             +  P ++    +  YRH  LD+DG++ P  ++  + VLV ++ P   +    S  SM  
Sbjct: 776  EVPSPNIQGYLGEKYYRH--LDEDGLIFPESKVEGKDVLVGRTSPPRFIEEQSSLGSMVL 833

Query: 1088 PEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
               +E  V+ + S    ++KV+V+   +   L+K+ +R  R PE+GDKF+SRHGQKGVIG
Sbjct: 834  QGRRETSVTVRPSEKGVVDKVIVTETGDGTKLVKVTVRDLRIPELGDKFASRHGQKGVIG 893

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            LIV QEDMP+ ESGI PD+I+NPHG+
Sbjct: 894  LIVPQEDMPWTESGIVPDLIVNPHGI 919



 Score =  202 bits (513), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 101/188 (53%), Positives = 133/188 (70%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            +E  V+ + S    ++KV+V+   +   L+K+ +R  R PE+GDKF+SRHGQKGVIGLIV
Sbjct: 837  RETSVTVRPSEKGVVDKVIVTETGDGTKLVKVTVRDLRIPELGDKFASRHGQKGVIGLIV 896

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMP+ ESGI PD+I+NPHG PSRMTVG+LIE + GK   + G   +GTAF G     
Sbjct: 897  PQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLIEAIGGKVASLTGRRVDGTAFIGEPEEK 956

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
            +++EL   G+ + G++I Y GITG  LEA I+ G +YYQ+L HMV DK+HARSRGP  VL
Sbjct: 957  LRKELEELGFKHSGREIMYDGITGRRLEADIFIGVIYYQRLHHMVADKMHARSRGPVQVL 1016

Query: 1363 TRQPTGRR 1370
            T+QPT  R
Sbjct: 1017 TKQPTEGR 1024



 Score =  105 bits (263), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/146 (36%), Positives = 85/146 (58%), Gaps = 9/146 (6%)

Query: 188 IVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEK 247
           + N +R D ++  +  A+ TG+W        R GV+Q+L R +Y+S L  + R+ S   +
Sbjct: 394 VRNSIRPDVLSERIEHALATGSWP-----GGRTGVSQLLDRTNYMSTLSHLRRVTSPLSR 448

Query: 248 TRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIE 307
            +     R L G+ WG +CP++TPEG  CGLVKNLALM+ ITT   E+ + + +  +G+ 
Sbjct: 449 DQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMSQITTGIPEREVREYLMKMGVV 508

Query: 308 HIAMFNGEELSSPGVYLVFVNGILAG 333
            I     E   +PG+Y V++NG+L G
Sbjct: 509 PIE----ERRPAPGLYRVYLNGVLIG 530



 Score = 84.3 bits (207), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 49/137 (35%), Positives = 70/137 (51%), Gaps = 25/137 (18%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIA-----VSESGIRPGVTTHLEIAPFTLLGVCAGIELL 746
           + D +  G IEYLD  E  ++++A     V+E        THLE+ P  +LG+ A     
Sbjct: 606 WSDLIRMGVIEYLDAEEEENAYVATWPWEVTEE------HTHLELMPAAILGIPAS---- 655

Query: 747 QYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMV 806
                     LVPYP HN APRNTY   M KQ++G    N + R+DT  + + Y Q P+V
Sbjct: 656 ----------LVPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLMHYPQVPLV 705

Query: 807 ESKTIRITNFHKLPAGK 823
            S+ ++   F   PAG+
Sbjct: 706 NSRIMKAVGFEDRPAGQ 722



 Score = 43.5 bits (101), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 37/66 (56%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQ 400
           + +PE +E+    R   P + R+R+LTYSAP+ +++            ++ IG +PIML+
Sbjct: 72  IGQPEFQEAQGQRRPLYPMDARIRNLTYSAPLYLEMIPVVNGIEQEPVEVRIGELPIMLK 131

Query: 401 SSKCVL 406
           S  C L
Sbjct: 132 SKACRL 137



 Score = 41.6 bits (96), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 40/78 (51%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A   + +  + H+ V     + KA YL +M  +++         DD+D+Y NKRL+LAG 
Sbjct: 294 AEHIIDNNLLPHMGVDPENRRAKAYYLGMMALKVLELSLGLRGEDDKDHYANKRLKLAGD 353

Query: 516 LLSLMFEDVFKRFNSELK 533
           LL  +F   F +   +++
Sbjct: 354 LLKDLFRVAFGQLVKDMQ 371


>gi|396941963|gb|AFN89698.1| RNA polymerase II, partial [Saitoella complicata]
          Length = 727

 Score =  219 bits (558), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 109/263 (41%), Positives = 163/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DT+   L Y Q+P+  ++++    F
Sbjct: 456  IIPFPDHNQSPRNTYQSAMGKQAMGIFLSNFQTRMDTMANILYYPQKPLATTRSMEYLRF 515

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R L YR+     K+   QT +  
Sbjct: 516  RELPAGQNAIVAILVYSGYNQEDSVIMNQSSIDRGLFRSLYYRSHVDAEKKAGMQTVEEF 575

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS-AISMATPEY-- 1090
              P  +   R     +  L+ DG VAPG ++    ++V K+ P    S  +   T  +  
Sbjct: 576  EKPTRQTTLRMKHGTYDKLEDDGFVAPGTRVSGEDIIVGKTAPIAPDSEELGQRTRLHSK 635

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V +  K +    +++V V++N+E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 636  RDVSMPLKSTENGIVDQVAVTTNAEGMKFVKVRVRSTRVPQIGDKFASRHGQKGTIGITY 695

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
              EDMPF   G+ PDII+NPH +
Sbjct: 696  RHEDMPFTAEGVTPDIIINPHAI 718



 Score =  114 bits (286), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 69/213 (32%), Positives = 114/213 (53%), Gaps = 22/213 (10%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKM-ERQGVTQVLSRLSYISGLGMMTRINS 243
           +F+    M+  TIT  L  ++ TGNW  +   +  R GV+QVL+R ++ S L  + R N+
Sbjct: 131 EFNAAAGMKTSTITQGLKYSLATGNWGDQAKGLANRVGVSQVLNRYTFASTLSHLRRTNT 190

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNL+LM++I+       +++ + N
Sbjct: 191 PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSYISVSRPSAQIIENLNN 250

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHECRL 363
            GIE    ++   +  P    +F+NG+  G+   H++   P I  +             L
Sbjct: 251 WGIEGFEQYSANAV--PDATRIFLNGVWLGV---HRD---PSILVNA------------L 290

Query: 364 RDLTYSAPITVDIEYTRG-SQRVVRSDLVIGRM 395
           RD+  +A I VD+   R   +R VR     GR+
Sbjct: 291 RDMRRTAEIPVDVSVVRDIREREVRIFTDAGRV 323



 Score =  103 bits (256), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 46/97 (47%), Positives = 65/97 (67%)

Query: 1178 RITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV 1237
            R+   ++V +  K +    +++V V++N+E    +K+ +R TR P+IGDKF+SRHGQKG 
Sbjct: 631  RLHSKRDVSMPLKSTENGIVDQVAVTTNAEGMKFVKVRVRSTRVPQIGDKFASRHGQKGT 690

Query: 1238 IGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKL 1274
            IG+    EDMPF   G+ PDII+NPH  PSRMTV  L
Sbjct: 691  IGITYRHEDMPFTAEGVTPDIIINPHAIPSRMTVAHL 727



 Score = 91.3 bits (225), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 45/100 (45%), Positives = 59/100 (59%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LGVCA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 440 THCEIHPSMILGVCASI--------------IPFPDHNQSPRNTYQSAMGKQAMGIFLSN 485

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
            Q R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 486 FQTRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNAI 525



 Score = 50.1 bits (118), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 41/77 (53%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A D +    + HI         KA +L  M  R++L   +    DDRD++G KRL+LAG 
Sbjct: 42  AHDIMQKELLPHITTSVGFENRKAFFLGYMCHRLLLCALERRDQDDRDHFGKKRLDLAGP 101

Query: 516 LLSLMFEDVFKRFNSEL 532
           LL  +F  +FK+ + ++
Sbjct: 102 LLGGLFRMLFKKLSRDV 118


>gi|83415503|gb|ABC17959.1| RNA polymerase II second largest subunit, partial [Rhizophagus
            intraradices]
          Length = 764

 Score =  219 bits (558), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 106/264 (40%), Positives = 163/264 (61%), Gaps = 5/264 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL   L Y Q+P+V ++ +    F
Sbjct: 389  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNHQLRMDTLANILYYPQKPVVTTRAMEFLRF 448

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+     K+    T +  
Sbjct: 449  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIFYRSYMDQEKKVGMLTIEEF 508

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMA----TPE 1089
              P  E   R     +  L+ DG++APG ++    +++ K  P IS   + +     T  
Sbjct: 509  EKPTKETTLRLKHGTYEKLEDDGLIAPGTRVSGDDIIIGKVTP-ISNETLELGQRQTTHT 567

Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             ++     + +    +++V+V++N+E    +K+ +R TR P++GDKF+SRHGQKG IG+ 
Sbjct: 568  QRDASTPMRSTETGIVDQVMVTTNAEGMKFVKVRVRSTRVPQMGDKFASRHGQKGTIGIT 627

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
              QEDMPF   GI PD+++NPH +
Sbjct: 628  YRQEDMPFTAEGIAPDLVINPHAI 651



 Score =  186 bits (472), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 83/174 (47%), Positives = 117/174 (67%)

Query: 1197 LEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICP 1256
            +++V+V++N+E    +K+ +R TR P++GDKF+SRHGQKG IG+   QEDMPF   GI P
Sbjct: 583  VDQVMVTTNAEGMKFVKVRVRSTRVPQMGDKFASRHGQKGTIGITYRQEDMPFTAEGIAP 642

Query: 1257 DIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQG 1316
            D+++NPH  PSRMT+G L+E L GK   + G   + T F    +  + + L   GY  +G
Sbjct: 643  DLVINPHAIPSRMTIGHLVECLLGKVSTLTGQEGDATPFTDVTVEAISQSLRLQGYQSRG 702

Query: 1317 KDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRR 1370
             ++ Y+G TG  L A ++ GP YYQ+LKHMV DKIH+R+RGP  +LTRQP   R
Sbjct: 703  FEVMYNGHTGRKLAAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGR 756



 Score =  110 bits (274), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 59/156 (37%), Positives = 92/156 (58%), Gaps = 10/156 (6%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW  ++  M+ R GV+QVL+R ++ S L  + R N+
Sbjct: 39  EFNLNLAIKAQTITNGLKYSLATGNWGDQKKAMQSRAGVSQVLNRYTFASTLSHLRRCNT 98

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CPS+TPEG+ACGLVKNL+LM++I+  +  K ++  +  
Sbjct: 99  PMGRDGKIAKPRQLHNTHWGMVCPSETPEGQACGLVKNLSLMSYISVGSASKPIIDFL-- 156

Query: 304 IGIEHIAMFNGEELSSPGVYL----VFVNGILAGIT 335
              E   M N  +   P        VFVNG   GI+
Sbjct: 157 ---EEYGMINLNQQFDPANIRDNAKVFVNGKWVGIS 189



 Score = 93.2 bits (230), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 49/132 (37%), Positives = 73/132 (55%), Gaps = 14/132 (10%)

Query: 695 FLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHS 754
           F   G+++    +E + +    +++ ++    TH EI P  +LG+CA I           
Sbjct: 341 FHETGEVKQEKAHERDIAARVKTDTNLKIYTWTHCEIHPSMILGICASI----------- 389

Query: 755 PGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRIT 814
              +P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL   L Y Q+P+V ++ +   
Sbjct: 390 ---IPFPDHNQSPRNTYQSAMGKQAMGIYVTNHQLRMDTLANILYYPQKPVVTTRAMEFL 446

Query: 815 NFHKLPAGKCQI 826
            F +LPAG+  I
Sbjct: 447 RFRELPAGQNAI 458


>gi|120561253|gb|ABM27011.1| RNA polymerase II second largest subunit, partial [Funneliformis
            mosseae]
          Length = 883

 Score =  219 bits (558), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 105/264 (39%), Positives = 164/264 (62%), Gaps = 5/264 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL   L Y Q+P+V ++ +    F
Sbjct: 539  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLANILYYPQKPLVTTRAMEFLRF 598

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+     K+    T +  
Sbjct: 599  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIFYRSYMDQEKKVGMLTIEEF 658

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMA----TPE 1089
              P  E   R     +  L++DG++APG ++    +++ K  P IS   + +     +  
Sbjct: 659  EKPTKETTLRLKHGTYEKLEEDGLIAPGTRVSGDDIIIGKVTP-ISPDTVELGQRKTSHT 717

Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             ++     + +    +++V+V++N+E    +K+ +R TR P++GDKF+SRHGQKG IG+ 
Sbjct: 718  KRDASTPMRSTETGIVDQVMVTTNAEGMKFVKVRVRSTRVPQMGDKFASRHGQKGTIGIT 777

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
              QEDMPF   GI PD+++NPH +
Sbjct: 778  YRQEDMPFTAEGITPDLVINPHAI 801



 Score =  157 bits (397), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 68/151 (45%), Positives = 100/151 (66%)

Query: 1197 LEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICP 1256
            +++V+V++N+E    +K+ +R TR P++GDKF+SRHGQKG IG+   QEDMPF   GI P
Sbjct: 733  VDQVMVTTNAEGMKFVKVRVRSTRVPQMGDKFASRHGQKGTIGITYRQEDMPFTAEGITP 792

Query: 1257 DIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQG 1316
            D+++NPH  PSRMT+G ++E L GK   + G   + T F    +  + + L   GY  +G
Sbjct: 793  DLVINPHAIPSRMTIGHMVECLLGKVSTLTGQEGDATPFTDVTVEAISQSLRSQGYQSRG 852

Query: 1317 KDIFYSGITGEALEAYIYSGPVYYQKLKHMV 1347
             ++ Y+G TG  L A ++ GP YYQ+LKHMV
Sbjct: 853  FEVMYNGHTGRKLSAQVFLGPTYYQRLKHMV 883



 Score =  111 bits (277), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 59/156 (37%), Positives = 93/156 (59%), Gaps = 10/156 (6%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW  ++  M+ R GV+QVL+R ++ S L  + R N+
Sbjct: 229 EFNLNLAIKAQTITNGLKYSLATGNWGDQKKAMQSRAGVSQVLNRYTFASTLSHLRRCNT 288

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNL+LM++I+  +  K ++  +  
Sbjct: 289 PMGRDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSYISVGSASKPIIDFL-- 346

Query: 304 IGIEHIAMFNGEELSSPGVY----LVFVNGILAGIT 335
              E   M N  +   P        VFVNG  AGI+
Sbjct: 347 ---EEYGMINLNQQFDPANIKDNTKVFVNGKWAGIS 379



 Score = 94.4 bits (233), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 48/110 (43%), Positives = 64/110 (58%), Gaps = 14/110 (12%)

Query: 717 SESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMG 776
           SE+ ++    TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMG
Sbjct: 513 SETNLKIHSWTHCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMG 558

Query: 777 KQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
           KQAMG    N Q R+DTL   L Y Q+P+V ++ +    F +LPAG+  I
Sbjct: 559 KQAMGIYVTNYQLRMDTLANILYYPQKPLVTTRAMEFLRFRELPAGQNAI 608



 Score = 60.1 bits (144), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 58/114 (50%), Gaps = 14/114 (12%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A+D L    + H+       K KA +L  M+ R++LA      LDDRD+YG KR++LAG 
Sbjct: 140 AKDILQKELLPHVSTEYGCEKRKAFFLGYMVHRLLLAALGRRELDDRDHYGKKRMDLAGP 199

Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYGN 555
           LL+ +F  +FK+   ++           +E NL+  +    + +G  + L  GN
Sbjct: 200 LLASLFRMLFKKLTKDVSIYLRKCIDSNREFNLNLAIKAQTITNGLKYSLATGN 253


>gi|15679063|ref|NP_276180.1| DNA-directed RNA polymerase subunit B' [Methanothermobacter
            thermautotrophicus str. Delta H]
 gi|3122768|sp|O27124.1|RPOB1_METTH RecName: Full=DNA-directed RNA polymerase subunit B'
 gi|2622149|gb|AAB85541.1| DNA-dependent RNA polymerase, subunit B' [Methanothermobacter
            thermautotrophicus str. Delta H]
          Length = 603

 Score =  219 bits (558), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 106/264 (40%), Positives = 160/264 (60%), Gaps = 3/264 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            G++P+ +HN +PRNT +  M KQA+G    N   R DT  + L + Q P+V+++ I +T 
Sbjct: 137  GIIPFANHNSSPRNTMEAGMTKQALGLYASNYDLRTDTRAHLLHHPQVPIVKTRIIDVTG 196

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + + P+GQN  +AVMSY GY++EDALI+NKASL+RG  R   +R+ +   ++YP    DR
Sbjct: 197  YDERPSGQNFVVAVMSYEGYNMEDALILNKASLERGLARSSFFRSYEAAERRYPGGQEDR 256

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPT---ISVSAISMATPE 1089
               P       +    +R LD+DGI+ P  ++    VL+ K+ P      +         
Sbjct: 257  FEIPEKGVRGYRSESDYRHLDEDGIINPEAEVSSGDVLIGKTSPPRFLEEIDEFGTVAER 316

Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             +E  V+ +      ++ VL++   E + L K+ +R+ R+PE+GDKF+SRHGQKGV+GLI
Sbjct: 317  RRETSVTVRHGEKGIVDAVLLTETVEGSRLAKIRVREQRQPELGDKFASRHGQKGVVGLI 376

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
            V QEDMPF E GI PD+I+NPH +
Sbjct: 377  VSQEDMPFTEDGIVPDLIVNPHAI 400



 Score =  206 bits (525), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 99/190 (52%), Positives = 133/190 (70%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            +E  V+ +      ++ VL++   E + L K+ +R+ R+PE+GDKF+SRHGQKGV+GLIV
Sbjct: 318  RETSVTVRHGEKGIVDAVLLTETVEGSRLAKIRVREQRQPELGDKFASRHGQKGVVGLIV 377

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF E GI PD+I+NPH  PSRM+VG+++E+LAGKA  MEG   +GT F G    D
Sbjct: 378  SQEDMPFTEDGIVPDLIVNPHAIPSRMSVGQVLEMLAGKAACMEGRRVDGTPFTGEDEDD 437

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
            ++E L  +G+   G +  Y+GITGE +EA I+ G  YYQKL HM  DK++ARSRGP  VL
Sbjct: 438  IKEALRANGFETAGVESLYNGITGERIEAEIFIGVAYYQKLHHMTTDKVYARSRGPVQVL 497

Query: 1363 TRQPTGRRWK 1372
            TRQPT  R +
Sbjct: 498  TRQPTEGRAR 507



 Score = 94.4 bits (233), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 51/136 (37%), Positives = 76/136 (55%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G   +DD +  G IEYLD  E  +++IA+S   I     THLEI P T+LG+CAGI    
Sbjct: 84  GEMSWDDLIAAGIIEYLDAEEEENAYIAMSPDEIN-DEHTHLEIDPSTMLGICAGI---- 138

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                     +P+ +HN +PRNT +  M KQA+G    N   R DT  + L + Q P+V+
Sbjct: 139 ----------IPFANHNSSPRNTMEAGMTKQALGLYASNYDLRTDTRAHLLHHPQVPIVK 188

Query: 808 SKTIRITNFHKLPAGK 823
           ++ I +T + + P+G+
Sbjct: 189 TRIIDVTGYDERPSGQ 204


>gi|300394744|gb|ADK11910.1| DNA-directed RNA polymerase II subunit two, partial [Pterula echo]
          Length = 682

 Score =  219 bits (558), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 109/263 (41%), Positives = 163/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 365  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKF 424

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R L YR+   + K+   Q  +  
Sbjct: 425  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSLYYRSYMDLEKKSGVQQLEEF 484

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS-AISMATPEY-- 1090
              P  E   R     +  L+ DG++APG  +    +++ K+ P    S  +   T  +  
Sbjct: 485  EKPSRENTLRMKHGTYDKLEDDGLIAPGTNVLGEDIIIGKTAPIPPDSEELGQRTRSHTR 544

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 545  RDVSTPLKSTEKGIVDQVLITTNSEGQKFVKVRVRSTRVPQIGDKFASRHGQKGTIGITY 604

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 605  RQEDMPFTADGIVPDIIINPHAI 627



 Score =  126 bits (317), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 58/138 (42%), Positives = 85/138 (61%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 545  RDVSTPLKSTEKGIVDQVLITTNSEGQKFVKVRVRSTRVPQIGDKFASRHGQKGTIGITY 604

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + G   + T F    + +
Sbjct: 605  RQEDMPFTADGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGQEGDATPFSDLTVEE 664

Query: 1303 VQEELIRHGYNYQGKDIF 1320
            V + L   G+  +G ++ 
Sbjct: 665  VSKTLYERGFQSRGLEVM 682



 Score =  110 bits (276), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 59/152 (38%), Positives = 91/152 (59%), Gaps = 6/152 (3%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 43  EFNLALAVKHQTITNGLKYSLATGNWGDQKKMMSSKAGVSQVLNRYTYASTLSHLRRCNT 102

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  S WGM+CP++TPEG+ACGLVKNLALM+ I+  +    +L  +  
Sbjct: 103 PLGREGKIAKPRQLHNSHWGMVCPAETPEGQACGLVKNLALMSCISVGSFSGPVLDFLEE 162

Query: 304 IGIEHIAMFNGEELSSPGVYL-VFVNGILAGI 334
            G+E +     E   S   Y  VF+NG+  G+
Sbjct: 163 WGLESLE----ENAHSTTPYTKVFLNGVWIGV 190



 Score = 87.0 bits (214), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 349 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 394

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 395 FLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAI 434


>gi|325092558|gb|EGC45868.1| DNA-dependent RNA polymerase II RPB140 [Ajellomyces capsulatus H88]
          Length = 1307

 Score =  219 bits (558), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 162/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R++T+   L Y Q+P+  ++++    F
Sbjct: 889  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSMEFLKF 948

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR      K       +R 
Sbjct: 949  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMVGMTVVERF 1008

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAISMATPEYKE 1092
              P+     R     +  +D DGIVAPG ++    +++ K+ P       +   T ++ +
Sbjct: 1009 EKPMRSDTLRMKHGTYDKVDDDGIVAPGVRVSGEDIIIGKTAPLAPEAEELGQRTKQHTK 1068

Query: 1093 VPVS--YKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            + VS   + +    +++VLVS++++D   +K+ +R T+ P+IGDKF+SRHGQKG IG+  
Sbjct: 1069 IDVSTPLRSTESGIVDQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITY 1128

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PD+I+NPH +
Sbjct: 1129 RQEDMPFTREGIVPDLIINPHAI 1151



 Score =  184 bits (466), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 97/260 (37%), Positives = 148/260 (56%), Gaps = 15/260 (5%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESGICPDIIMNPHGLK 1174
            ++ +  +P   D    +HG        G++  G+ V  ED+   ++       + P   +
Sbjct: 1004 VVERFEKPMRSDTLRMKHGTYDKVDDDGIVAPGVRVSGEDIIIGKTAP-----LAPEAEE 1058

Query: 1175 GCDRITEYKEVPVS--YKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRH 1232
               R  ++ ++ VS   + +    +++VLVS++++D   +K+ +R T+ P+IGDKF+SRH
Sbjct: 1059 LGQRTKQHTKIDVSTPLRSTESGIVDQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRH 1118

Query: 1233 GQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEG 1292
            GQKG IG+   QEDMPF   GI PD+I+NPH  PSRMT+  LIE    K   + G   + 
Sbjct: 1119 GQKGTIGITYRQEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDA 1178

Query: 1293 TAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIH 1352
            T F    +  +   L  HGY  +G ++ Y+G TG  L A ++ GP YYQ+L+HMV DKIH
Sbjct: 1179 TPFTDVTVDSISSLLREHGYQSRGFEVMYNGYTGRKLVAQVFLGPTYYQRLRHMVDDKIH 1238

Query: 1353 ARSRGPRVVLTRQPTGRRWK 1372
            AR+RGP  +LTRQP   R +
Sbjct: 1239 ARARGPTQILTRQPVEGRAR 1258



 Score =  109 bits (273), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 55/144 (38%), Positives = 85/144 (59%), Gaps = 3/144 (2%)

Query: 192 MRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRK 250
           ++  T+++ L  A+ TGNW   ++    + GV+QVL+R +Y S L  + R N+   +  K
Sbjct: 572 VKASTLSSGLKYALATGNWGEQKKAASSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGK 631

Query: 251 VSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIA 310
           ++ PR L  + WG++CP++TPEG+ACGLVKNLALM  IT     + ++  M    +E + 
Sbjct: 632 IAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCCITVGTPSEPIIDFMIQRNMEVLE 691

Query: 311 MFNGEELSSPGVYLVFVNGILAGI 334
            F  E   SP    VFVNG+  G+
Sbjct: 692 EF--EPQVSPNATKVFVNGVWVGV 713



 Score = 88.6 bits (218), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/100 (42%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 873 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 918

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R++T+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 919 FDQRMETMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 958



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 56/115 (48%), Gaps = 16/115 (13%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMV-LALSDPDMLDDRDYYGNKRLELAG 514
           ARD +    + HI         KA +L  M+ R++  AL   D +DDRD++G KRL+LAG
Sbjct: 476 ARDIIQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRD-VDDRDHFGKKRLDLAG 534

Query: 515 SLLSLMFEDVFKRFNSELK-------ETNLSGVVN-------LVSGWWFELKYGN 555
            LL+ +F  +F R   +L        ETN    +N       L SG  + L  GN
Sbjct: 535 PLLANLFRILFMRVTKDLYKYVQRCVETNRQLYLNIGVKASTLSSGLKYALATGN 589



 Score = 42.0 bits (97), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 9/62 (14%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSD---------VDPLFYL 164
           D W ++ SF + KGLV   +DSFD FI+  +++L++    +  D         +DP+   
Sbjct: 126 DCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTLAPAEDEIDPVVLR 185

Query: 165 KY 166
           +Y
Sbjct: 186 RY 187


>gi|119644344|gb|ABL85619.1| RNA polymerase II second largest subunit [Xanthoria elegans]
          Length = 718

 Score =  219 bits (557), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 115/287 (40%), Positives = 169/287 (58%), Gaps = 5/287 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 370  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDERMDTMANILYYPQKPLATTRSMEFLKF 429

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR      K+      ++ 
Sbjct: 430  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYVDTEKRVGMTVLEKF 489

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMA--TPEY- 1090
              PL     +     +  LD DG+VAPG ++    V++ K+ P I+  A  M   T  + 
Sbjct: 490  EKPLRTETLKLKHGTYDKLDDDGLVAPGVRVSGEDVIIGKTTP-IAPDAQEMGQRTKSHI 548

Query: 1091 -KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             K+     + +    ++KVL+S+NSE    +K+ +R T+ P+IGDKF+SRHGQKG IG+ 
Sbjct: 549  KKDASTPLRSTENGIVDKVLLSTNSEGLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGIT 608

Query: 1150 VEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSY 1196
              QEDMPF   G+ PD+I+NPH +     I    E  +S   S+  Y
Sbjct: 609  YRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGY 655



 Score =  158 bits (400), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 75/169 (44%), Positives = 105/169 (62%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            K+     + +    ++KVL+S+NSE    +K+ +R T+ P+IGDKF+SRHGQKG IG+  
Sbjct: 550  KDASTPLRSTENGIVDKVLLSTNSEGLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITY 609

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   G+ PD+I+NPH  PSRMT+  LIE    K   + G   + T F    +  
Sbjct: 610  RQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGYEGDATPFTEITVDS 669

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKI 1351
            V + L  HGY  +G ++ Y+G TG  L A ++ GP YYQ+L+HMV DKI
Sbjct: 670  VSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKI 718



 Score =  112 bits (280), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 58/166 (34%), Positives = 98/166 (59%), Gaps = 6/166 (3%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++Q+T+++ L  ++ TGNW   ++    + GV+QVL+R ++ S L  + R N+
Sbjct: 46  EFNLTLGVKQNTLSSGLKYSLATGNWGDQKKAASAKAGVSQVLNRYTFASTLSHLRRTNT 105

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM +I+       ++  + N
Sbjct: 106 PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYISVGTPADPIVDYLTN 165

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGITCHHKEV-CKPEIEE 348
            G+E +  +  E   +P    VFVNG   G  CH+      P I+E
Sbjct: 166 RGMESLEEY--EPTRAPHATKVFVNGTWIG--CHNDPAHLVPHIQE 207



 Score = 90.1 bits (222), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 354 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 399

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 400 YDERMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 439


>gi|223478302|ref|YP_002582840.1| DNA-directed RNA polymerase subunit B [Thermococcus sp. AM4]
 gi|214033528|gb|EEB74355.1| DNA-directed RNA polymerase subunit B [Thermococcus sp. AM4]
          Length = 1122

 Score =  219 bits (557), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 112/264 (42%), Positives = 163/264 (61%), Gaps = 4/264 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            LVPYP HN APRNTY   M KQ++G    N + R+DT  + + Y Q P+V S+ ++   F
Sbjct: 655  LVPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLMHYPQVPLVNSRIMKAVGF 714

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             + PAGQN  +AV+SY GY++EDA+I+NKAS++RG  R   +R  +   K+Y     DR 
Sbjct: 715  EERPAGQNFVVAVLSYQGYNMEDAIIINKASIERGLARSTFFRTYEAEEKRYLGGQMDRF 774

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAIS----MATPE 1089
              P            +R LD+DGI+ P  ++  + VLV ++ P   +   S    +A  E
Sbjct: 775  EKPDPTIKGYLGDRYYRNLDEDGIIFPESKVEGKDVLVGRTSPPRFLEEQSGLGGIALQE 834

Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             +E  V+ + S    ++KV+++   +   L+K+ +R  R PE+GDKF+SRHGQKGVIGLI
Sbjct: 835  RRETSVAVRPSEKGIVDKVIITETGDGTKLVKVTVRDLRIPELGDKFASRHGQKGVIGLI 894

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
            V QEDMP+ E+GI PD+I+NPHG+
Sbjct: 895  VPQEDMPWTENGIVPDLIVNPHGI 918



 Score =  204 bits (518), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 110/241 (45%), Positives = 156/241 (64%), Gaps = 4/241 (1%)

Query: 1132 IGDKFSSRHGQKGVI--GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSY 1189
            +GD++     + G+I     VE +D+    +   P  +    GL G   + E +E  V+ 
Sbjct: 785  LGDRYYRNLDEDGIIFPESKVEGKDVLVGRTS-PPRFLEEQSGLGGI-ALQERRETSVAV 842

Query: 1190 KGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPF 1249
            + S    ++KV+++   +   L+K+ +R  R PE+GDKF+SRHGQKGVIGLIV QEDMP+
Sbjct: 843  RPSEKGIVDKVIITETGDGTKLVKVTVRDLRIPELGDKFASRHGQKGVIGLIVPQEDMPW 902

Query: 1250 NESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIR 1309
             E+GI PD+I+NPHG PSRMTVG+LIE + GK   ++G   +GTAF G     +++EL  
Sbjct: 903  TENGIVPDLIVNPHGIPSRMTVGQLIEAIGGKVASLKGRRVDGTAFIGEPEERLRKELEE 962

Query: 1310 HGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGR 1369
             G+ + G+++ Y GITG  LEA I+ G +YYQ+L HMV DK+HARSRGP  VLT+QPT  
Sbjct: 963  LGFKHTGREVMYDGITGRRLEADIFVGVIYYQRLHHMVADKMHARSRGPVQVLTKQPTEG 1022

Query: 1370 R 1370
            R
Sbjct: 1023 R 1023



 Score =  107 bits (266), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 57/156 (36%), Positives = 87/156 (55%), Gaps = 9/156 (5%)

Query: 188 IVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEK 247
           + N +R D ++  +  A+ TG+W        R GV+Q+L R +YIS L  + R+ S   +
Sbjct: 393 VRNSVRPDVLSERIEHALATGSWP-----GGRTGVSQLLDRTNYISTLSHLRRVTSPLSR 447

Query: 248 TRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIE 307
            +     R L G+ WG +CP++TPEG  CGLVKNLALM  ITT   E+ + + +  +G+ 
Sbjct: 448 DQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITTGIPEEEVREYLLKLGVV 507

Query: 308 HIAMFNGEELSSPGVYLVFVNGILAGITCHHKEVCK 343
            I     E   SPG+Y V++NG+L G     K + +
Sbjct: 508 PIE----ERRPSPGLYRVYLNGVLIGTIEDGKALVQ 539



 Score = 84.7 bits (208), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/137 (35%), Positives = 71/137 (51%), Gaps = 25/137 (18%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIA-----VSESGIRPGVTTHLEIAPFTLLGVCAGIELL 746
           + D +  G IEYLD  E  ++++A     V+E        THLE+ P  +LG+ A     
Sbjct: 605 WSDLIRMGVIEYLDAEEEENAYVATWPWEVTEE------HTHLELMPAAILGIPAS---- 654

Query: 747 QYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMV 806
                     LVPYP HN APRNTY   M KQ++G    N + R+DT  + + Y Q P+V
Sbjct: 655 ----------LVPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLMHYPQVPLV 704

Query: 807 ESKTIRITNFHKLPAGK 823
            S+ ++   F + PAG+
Sbjct: 705 NSRIMKAVGFEERPAGQ 721



 Score = 43.1 bits (100), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 37/59 (62%), Gaps = 1/59 (1%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           D W ++ S+ KEKGLV+ H+DS++ FI   +++++     +  D+ P F +K+  I +G
Sbjct: 15  DLWIVMESYWKEKGLVRQHLDSYNAFIEHGLQEVINEFGGVKPDI-PNFEVKFGKIRLG 72



 Score = 42.7 bits (99), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 40/78 (51%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A   + +  + H+ V     K KA YL +M  +++         DD+D+Y NKRL+LAG 
Sbjct: 293 AEHIIDNNLLPHMGVEPENRKAKAYYLGMMALKVLELALGLRGEDDKDHYANKRLKLAGD 352

Query: 516 LLSLMFEDVFKRFNSELK 533
           LL  +F   F +   +++
Sbjct: 353 LLKDLFRVAFGQLVKDMQ 370


>gi|55273995|gb|AAV48868.1| RNA polymerase II second largest subunit [Calostoma cinnabarinum]
          Length = 680

 Score =  219 bits (557), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 108/263 (41%), Positives = 162/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 347  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKF 406

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+M YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 407  RELPAGQNAIVAIMCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDMEKKSGVQQLEEF 466

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  L++DG++APG  +    +++ K+ P    S        T   
Sbjct: 467  EKPTRDTTLRMKHGTYDKLEEDGLIAPGTGVQGEDIIIGKTAPIPPESEELGQRTRTHTR 526

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 527  RDVSTPLKSTEKGTIDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITY 586

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 587  RQEDMPFTAEGISPDIIINPHAI 609



 Score =  142 bits (359), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 69/154 (44%), Positives = 95/154 (61%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 527  RDVSTPLKSTEKGTIDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITY 586

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 587  RQEDMPFTAEGISPDIIINPHAIPSRMTIGHLVECLLSKVATLLGNEGDATPFTELTVES 646

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSG 1336
            V   L + GY  +G ++ Y G TG  L+A IY G
Sbjct: 647  VSSFLRQKGYQSRGLEVMYHGHTGRKLQAQIYLG 680



 Score =  108 bits (270), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 91/151 (60%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 40  EFNLSLAVKHQTITNGLKYSLATGNWGDQKKSMAAKAGVSQVLNRYTYASTLSHLRRCNT 99

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +   ++ PR L  + WGM+CP++TPEG+ACGLVKNLALM  I+  +    +++ +  
Sbjct: 100 PLGREGXIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEE 159

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E  ++      S+P    VFVNG+  G+
Sbjct: 160 WGLE--SLEENAHSSTPCTK-VFVNGVWMGV 187



 Score = 87.4 bits (215), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 56/156 (35%), Positives = 81/156 (51%), Gaps = 22/156 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LGVCA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 331 THCEIHPSMILGVCASI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYLTN 376

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQISPGGAEELTARESCHEVLKI 846
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I    A    +  +  + + +
Sbjct: 377 FLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIV---AIMCYSGYNQEDSVIM 433

Query: 847 ISFSISVAVFDSVWLG-----DVKQGVHQLSEEKEP 877
              SI   +F S++       + K GV QL E ++P
Sbjct: 434 NQSSIDRGLFRSIYYRSYMDMEKKSGVQQLEEFEKP 469


>gi|52699906|gb|AAU87014.1| DNA-dependent RNA polymerase II second largest subunit [Xanthoria
            elegans]
          Length = 717

 Score =  219 bits (557), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 115/287 (40%), Positives = 169/287 (58%), Gaps = 5/287 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 367  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDERMDTMANILYYPQKPLATTRSMEFLKF 426

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR      K+      ++ 
Sbjct: 427  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYVDTEKRVGMTVLEKF 486

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMA--TPEY- 1090
              PL     +     +  LD DG+VAPG ++    V++ K+ P I+  A  M   T  + 
Sbjct: 487  EKPLRTETLKLKHGTYDKLDDDGLVAPGVRVSGEDVIIGKTTP-IAPDAQEMGQRTKSHI 545

Query: 1091 -KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             K+     + +    ++KVL+S+NSE    +K+ +R T+ P+IGDKF+SRHGQKG IG+ 
Sbjct: 546  KKDASTPLRSTENGIVDKVLLSTNSEGLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGIT 605

Query: 1150 VEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSY 1196
              QEDMPF   G+ PD+I+NPH +     I    E  +S   S+  Y
Sbjct: 606  YRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGY 652



 Score =  156 bits (395), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 74/157 (47%), Positives = 101/157 (64%)

Query: 1197 LEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICP 1256
            ++KVL+S+NSE    +K+ +R T+ P+IGDKF+SRHGQKG IG+   QEDMPF   G+ P
Sbjct: 561  VDKVLLSTNSEGLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGVVP 620

Query: 1257 DIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQG 1316
            D+I+NPH  PSRMT+  LIE    K   + G   + T F    +  V + L  HGY  +G
Sbjct: 621  DLIINPHAIPSRMTIAHLIECQLSKVSSLRGYEGDATPFTEITVDSVSKLLREHGYQSRG 680

Query: 1317 KDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHA 1353
             ++ Y+G TG  L A ++ GP YYQ+L+HMV  KI A
Sbjct: 681  FEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDXKIXA 717



 Score =  112 bits (280), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 58/166 (34%), Positives = 98/166 (59%), Gaps = 6/166 (3%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++Q+T+++ L  ++ TGNW   ++    + GV+QVL+R ++ S L  + R N+
Sbjct: 43  EFNLTLGVKQNTLSSGLKYSLATGNWGDQKKAASAKAGVSQVLNRYTFASTLSHLRRTNT 102

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM +I+       ++  + N
Sbjct: 103 PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYISVGTPADPIVDYLTN 162

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGITCHHKEV-CKPEIEE 348
            G+E +  +  E   +P    VFVNG   G  CH+      P I+E
Sbjct: 163 RGMESLEEY--EPTRAPHATKVFVNGTWIG--CHNDPAHLVPHIQE 204



 Score = 90.1 bits (222), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 351 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 396

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 397 YDERMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 436


>gi|126465702|ref|YP_001040811.1| DNA-directed RNA polymerase subunit B [Staphylothermus marinus F1]
 gi|126014525|gb|ABN69903.1| DNA-directed RNA polymerase, subunit B' / DNA-directed RNA
            polymerase, subunit B' [Staphylothermus marinus F1]
          Length = 1156

 Score =  219 bits (557), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 109/266 (40%), Positives = 165/266 (62%), Gaps = 3/266 (1%)

Query: 911  SPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRI 970
            +  ++PY  HNQ+PRN+Y+ AM KQ++G    N Q R+DT  + L Y Q+P+V+++ + +
Sbjct: 684  TASIIPYAEHNQSPRNSYEAAMAKQSLGLYSANFQQRMDTRGHLLHYPQKPLVQTRAMEV 743

Query: 971  TNFHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTH 1030
              +++ PAGQN  +AVMS++GY+IEDALIMNK+S+DRG  R   +R    V  +YP    
Sbjct: 744  NGYNERPAGQNMVVAVMSFTGYNIEDALIMNKSSVDRGLARSTFFRLYTTVEYRYPGGQE 803

Query: 1031 DRILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISM---AT 1087
            DRI+ P       +    +  LD+DGIV+P   +    VL+ K  P   ++A      A 
Sbjct: 804  DRIMIPPSNVRGYRGPKAYEKLDEDGIVSPETPVKGGDVLIGKISPPRFMTAQEYTVGAG 863

Query: 1088 PEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
               ++  V  +      ++ V+V+++ +   L+K+ +R  R PE+GDKF+SRHGQKGVIG
Sbjct: 864  ITRQDASVVTRHGEKGIVDVVMVTTDIDGNRLVKVRVRDLRIPELGDKFASRHGQKGVIG 923

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            L+V Q+DMPF E GI PD+I+NPH  
Sbjct: 924  LLVPQQDMPFTEEGIVPDLIINPHAF 949



 Score =  199 bits (505), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 96/176 (54%), Positives = 126/176 (71%)

Query: 1197 LEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICP 1256
            ++ V+V+++ +   L+K+ +R  R PE+GDKF+SRHGQKGVIGL+V Q+DMPF E GI P
Sbjct: 881  VDVVMVTTDIDGNRLVKVRVRDLRIPELGDKFASRHGQKGVIGLLVPQQDMPFTEEGIVP 940

Query: 1257 DIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQG 1316
            D+I+NPH +PSRMTVG+LIE +AGKA  +EG + + T F    + ++   L RHGY   G
Sbjct: 941  DLIINPHAFPSRMTVGQLIESIAGKAAALEGRFVDATPFHKEPIDNLMITLKRHGYPMSG 1000

Query: 1317 KDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
             +  Y G TGE L+  I+ G VYYQKL HMV DKIHAR+RGP  +LTRQPT  R K
Sbjct: 1001 YETMYDGRTGEILKTPIFIGIVYYQKLHHMVADKIHARARGPVQILTRQPTEGRAK 1056



 Score = 97.1 bits (240), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 48/139 (34%), Positives = 80/139 (57%), Gaps = 15/139 (10%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G  +F D +  G IEYLD +E  +++IA++   I P   TH+EI    ++G+ A I    
Sbjct: 633 GEWKFSDLVKRGIIEYLDADEEEEAYIALTPDQITPE-HTHMEIWTPAIMGITASI---- 687

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                     +PY  HNQ+PRN+Y+ AM KQ++G    N Q R+DT  + L Y Q+P+V+
Sbjct: 688 ----------IPYAEHNQSPRNSYEAAMAKQSLGLYSANFQQRMDTRGHLLHYPQKPLVQ 737

Query: 808 SKTIRITNFHKLPAGKCQI 826
           ++ + +  +++ PAG+  +
Sbjct: 738 TRAMEVNGYNERPAGQNMV 756



 Score = 80.9 bits (198), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 75/129 (58%), Gaps = 6/129 (4%)

Query: 182 KAAQFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRI 241
           K  + D+   ++   +T+ +  A+ TGNW        + GV+Q+L R + +S L  + R+
Sbjct: 403 KYGRLDLKLVIKPGMLTDRILHAMATGNWP-----GGKTGVSQLLDRTNLMSTLSHLRRV 457

Query: 242 NSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIM 301
            S  ++T+     R L  +QWG +CP +TPEG   GLVKNLALM H++    E+++  I+
Sbjct: 458 VSPLKRTQPHFEARELHPTQWGRMCPFETPEGANIGLVKNLALMAHVSVGVPEEHIEPIL 517

Query: 302 Y-NIGIEHI 309
           Y  +G++++
Sbjct: 518 YRKLGVKNL 526



 Score = 43.1 bits (100), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 16/95 (16%)

Query: 323 YLVFVNGILAGITCHHKEVC----------------KPEIEESFNYTRQTTPHECRLRDL 366
           Y  F++ +L  I   HKE+                 +P+I     + R  TP ECRLR+ 
Sbjct: 34  YNRFIDHLLPEIISEHKEITISGNRKLLIKGYRIGSEPKIRTIEGFERTVTPLECRLRNF 93

Query: 367 TYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQS 401
           TY+ PI + +     +      ++ +  +P+ML+S
Sbjct: 94  TYAVPIYLKVALQDETGIYKEQEIKLMDLPVMLKS 128



 Score = 42.0 bits (97), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 5/84 (5%)

Query: 456 ARDFLSSTCIAHI---PVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLEL 512
           A+  L    + HI   P   +R K KA ++  M+ +++  + D    DD+D+Y NKRL+L
Sbjct: 314 AQRALDEYLLPHIGTEPTPEVRRK-KAYFIGQMVNKLIELIVDRRKPDDKDHYRNKRLKL 372

Query: 513 AGSLLS-LMFEDVFKRFNSELKET 535
           AG LL+ L+  ++   F  E+K +
Sbjct: 373 AGDLLAQLVRHNLVTYFIREVKSS 396


>gi|154279576|ref|XP_001540601.1| DNA-directed RNA polymerase II 138 kDa polypeptide [Ajellomyces
            capsulatus NAm1]
 gi|150412544|gb|EDN07931.1| DNA-directed RNA polymerase II 138 kDa polypeptide [Ajellomyces
            capsulatus NAm1]
          Length = 1743

 Score =  219 bits (557), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 162/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R++T+   L Y Q+P+  ++++    F
Sbjct: 1272 IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSMEFLKF 1331

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR      K       +R 
Sbjct: 1332 RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMVGMTVVERF 1391

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAISMATPEYKE 1092
              P+     R     +  +D DGIVAPG ++    +++ K+ P       +   T ++ +
Sbjct: 1392 EKPMRSDTLRMKHGTYDKVDDDGIVAPGVRVSGEDIIIGKTAPLAPEAEELGQRTKQHTK 1451

Query: 1093 VPVS--YKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            + VS   + +    +++VLVS++++D   +K+ +R T+ P+IGDKF+SRHGQKG IG+  
Sbjct: 1452 LDVSTPLRSTESGIVDQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITY 1511

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PD+I+NPH +
Sbjct: 1512 RQEDMPFTREGIVPDLIINPHAI 1534



 Score =  184 bits (466), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 97/260 (37%), Positives = 148/260 (56%), Gaps = 15/260 (5%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESGICPDIIMNPHGLK 1174
            ++ +  +P   D    +HG        G++  G+ V  ED+   ++       + P   +
Sbjct: 1387 VVERFEKPMRSDTLRMKHGTYDKVDDDGIVAPGVRVSGEDIIIGKTAP-----LAPEAEE 1441

Query: 1175 GCDRITEYKEVPVS--YKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRH 1232
               R  ++ ++ VS   + +    +++VLVS++++D   +K+ +R T+ P+IGDKF+SRH
Sbjct: 1442 LGQRTKQHTKLDVSTPLRSTESGIVDQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRH 1501

Query: 1233 GQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEG 1292
            GQKG IG+   QEDMPF   GI PD+I+NPH  PSRMT+  LIE    K   + G   + 
Sbjct: 1502 GQKGTIGITYRQEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDA 1561

Query: 1293 TAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIH 1352
            T F    +  +   L  HGY  +G ++ Y+G TG  L A ++ GP YYQ+L+HMV DKIH
Sbjct: 1562 TPFTDVTVDSISSLLREHGYQSRGFEVMYNGYTGRKLVAQVFLGPTYYQRLRHMVDDKIH 1621

Query: 1353 ARSRGPRVVLTRQPTGRRWK 1372
            AR+RGP  +LTRQP   R +
Sbjct: 1622 ARARGPTQILTRQPVEGRAR 1641



 Score =  109 bits (272), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 55/144 (38%), Positives = 84/144 (58%), Gaps = 3/144 (2%)

Query: 192  MRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRK 250
            ++  T++  L  A+ TGNW   ++    + GV+QVL+R +Y S L  + R N+   +  K
Sbjct: 955  VKASTLSGGLKYALATGNWGEQKKAASSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGK 1014

Query: 251  VSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIA 310
            ++ PR L  + WG++CP++TPEG+ACGLVKNLALM  IT     + ++  M    +E + 
Sbjct: 1015 IAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCCITVGTPSEPIIDFMIQRNMEVLE 1074

Query: 311  MFNGEELSSPGVYLVFVNGILAGI 334
             F  E   SP    VFVNG+  G+
Sbjct: 1075 EF--EPQVSPNATKVFVNGVWVGV 1096



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 42/100 (42%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727  THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
            TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 1256 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 1301

Query: 787  QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
               R++T+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 1302 FDQRMETMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 1341



 Score = 51.6 bits (122), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 44/78 (56%), Gaps = 2/78 (2%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMV-LALSDPDMLDDRDYYGNKRLELAG 514
           ARD +    + HI         KA +L  M+ R++  AL   D +DDRD++G KRL+LAG
Sbjct: 859 ARDIIQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRD-VDDRDHFGKKRLDLAG 917

Query: 515 SLLSLMFEDVFKRFNSEL 532
            LL+ +F  +F R   +L
Sbjct: 918 PLLANLFRILFMRVTKDL 935



 Score = 41.6 bits (96), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 9/62 (14%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSD---------VDPLFYL 164
           D W ++ SF + KGLV   +DSFD FI+  +++L++    +  D         +DP+   
Sbjct: 509 DCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTLAPAEDKIDPVVLR 568

Query: 165 KY 166
           +Y
Sbjct: 569 RY 570


>gi|332157775|ref|YP_004423054.1| DNA-directed RNA polymerase subunit B [Pyrococcus sp. NA2]
 gi|331033238|gb|AEC51050.1| DNA-directed RNA polymerase subunit B [Pyrococcus sp. NA2]
          Length = 1117

 Score =  219 bits (557), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 112/267 (41%), Positives = 167/267 (62%), Gaps = 11/267 (4%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            L+PYP HN APRNTY   M KQ++G    N + R+DT  + L Y Q P+V S+ ++   +
Sbjct: 651  LIPYPEHNAAPRNTYGAGMAKQSLGIGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGY 710

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR- 1032
               PAGQN  +AV++Y GY++EDA+I+NKAS++RG  R   +R  +   K+Y     D+ 
Sbjct: 711  EDRPAGQNFVVAVLAYQGYNMEDAIIINKASIERGLARSTFFRTYEAEEKKYLGGQTDKF 770

Query: 1033 -ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMP-----TISVSAISMA 1086
             I  P +     +  YRH  LD+DG++ P  ++  + VL+ ++ P        + A+S+ 
Sbjct: 771  EIPSPTVRGYRGEKYYRH--LDEDGLIFPESKVEGKDVLIGRTSPPRFLEERGLGAVSLQ 828

Query: 1087 TPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVI 1146
              E +E  V+ + S    ++KV+++   +   L+K+ +R  R PEIGDKF+SRHGQKGVI
Sbjct: 829  --ERRETSVAVRPSEKGIVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVI 886

Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGL 1173
            GLIV QEDMP+ ESGI PD+I+NPHG+
Sbjct: 887  GLIVPQEDMPWTESGIVPDLIVNPHGI 913



 Score =  205 bits (521), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 105/208 (50%), Positives = 141/208 (67%), Gaps = 1/208 (0%)

Query: 1163 CPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRP 1222
             P   +   GL G   + E +E  V+ + S    ++KV+++   +   L+K+ +R  R P
Sbjct: 812  SPPRFLEERGL-GAVSLQERRETSVAVRPSEKGIVDKVIITETGDGTKLVKVTVRDLRIP 870

Query: 1223 EIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKA 1282
            EIGDKF+SRHGQKGVIGLIV QEDMP+ ESGI PD+I+NPHG PSRMTVG+L+E + GK 
Sbjct: 871  EIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKV 930

Query: 1283 GLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQK 1342
              ++G   +GTAF G     +++EL   G+ + G++I Y GITG+  EA I+ G +YYQ+
Sbjct: 931  AALKGRRVDGTAFIGEPEEKLRKELEELGFKHTGREIMYDGITGKRFEADIFIGVIYYQR 990

Query: 1343 LKHMVQDKIHARSRGPRVVLTRQPTGRR 1370
            L HMV DKIHARSRGP  VLT+QPT  R
Sbjct: 991  LHHMVADKIHARSRGPVQVLTKQPTEGR 1018



 Score =  103 bits (258), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 55/156 (35%), Positives = 87/156 (55%), Gaps = 9/156 (5%)

Query: 188 IVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEK 247
           I N +R D +T  +  A+ TG W        R GV+Q+L R +Y+S +  + R+ S  ++
Sbjct: 391 IRNSIRPDVLTERIEHALATGAWP-----GGRTGVSQLLDRTNYVSTMSHLRRVTSPLDR 445

Query: 248 TRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIE 307
            +     R L G+ WG +CP++TPEG  CGLVKNLALM  ITT   E+ + + + ++GI 
Sbjct: 446 EQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITTAVPEEEVREYLMSLGIV 505

Query: 308 HIAMFNGEELSSPGVYLVFVNGILAGITCHHKEVCK 343
            I +       SP ++ V++NG+L G     K + +
Sbjct: 506 PIEVRR----PSPELWRVYLNGVLIGTVEDGKALVE 537



 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/136 (34%), Positives = 71/136 (52%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G  ++ D +  G IEYLD  E  ++++A+    +     THLE+ P  +LG+ A      
Sbjct: 597 GRLKWSDLIKMGVIEYLDAEEEENAYVAMWPWEVTKE-HTHLELMPAAILGLPAS----- 650

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYP HN APRNTY   M KQ++G    N + R+DT  + L Y Q P+V 
Sbjct: 651 ---------LIPYPEHNAAPRNTYGAGMAKQSLGIGWANFRIRVDTRGHLLHYPQIPLVN 701

Query: 808 SKTIRITNFHKLPAGK 823
           S+ ++   +   PAG+
Sbjct: 702 SRIMKAVGYEDRPAGQ 717



 Score = 43.5 bits (101), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 37/59 (62%), Gaps = 1/59 (1%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           D W ++ S+ +EKGLV+ H+DS++ FI   +++++     I  D+ P F +K+  I VG
Sbjct: 13  DLWIVMESYWQEKGLVRQHLDSYNAFIERGLQEVVDEVGGIKPDI-PDFEVKFGKIRVG 70



 Score = 43.5 bits (101), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 8/70 (11%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVD-IEYTRGSQRVVRSDLV---IGRMP 396
           V +PE +E     +   P + R+R+LTYSAP+ ++ I   RG    V  D V   IG +P
Sbjct: 69  VGEPEFQEPHGQRKPLYPMDARIRNLTYSAPLYLEMIPVIRG----VEQDPVEVRIGELP 124

Query: 397 IMLQSSKCVL 406
           IML+S  C L
Sbjct: 125 IMLKSKVCRL 134


>gi|68131860|gb|AAY85208.1| RNA polymerase II second largest subunit [Euptelea polyandra]
          Length = 874

 Score =  219 bits (557), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 110/271 (40%), Positives = 168/271 (61%), Gaps = 20/271 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 613  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHF 672

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L +R+ +           ++ 
Sbjct: 673  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR---------DEEKK 723

Query: 1034 LGPLLEADTRKPV------YRHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            +G L++ D  +P        RH +   LD DG+  PG ++    V++ K+ P     +  
Sbjct: 724  MGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQEESQG 783

Query: 1085 MATPEY--KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQ 1142
             A+  Y  ++   S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQ
Sbjct: 784  QASSRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQ 843

Query: 1143 KGVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            KG +G+   QEDMP+   GI PDII+NPH +
Sbjct: 844  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAI 874



 Score =  116 bits (291), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 62/146 (42%), Positives = 87/146 (59%), Gaps = 8/146 (5%)

Query: 192 MRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKV 251
           ++  TIT+ L  ++ TGNW        R GV+QVL+RL+Y S L  + R+NS   +  K+
Sbjct: 335 IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKL 394

Query: 252 SGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAM 311
           + PR L  S WGM+CP++TPEG+ACGLVKNLALM +IT  +    +L+ +     E  + 
Sbjct: 395 AKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFL-----EEWST 449

Query: 312 FNGEELSS---PGVYLVFVNGILAGI 334
            N EE+S    P    +FVNG   GI
Sbjct: 450 ENFEEISPAVIPQATKIFVNGCWVGI 475



 Score =  100 bits (249), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 64/172 (37%), Positives = 86/172 (50%), Gaps = 40/172 (23%)

Query: 677 RPTFLNMHQFLGFKRFD----------------DFLYEGKIEYLDVNEGNDSHIAVS--- 717
           RP F+   Q L  K+ D                D + +G IEY+D  E   + I+++   
Sbjct: 521 RPLFIVEKQRLLIKKKDIRALQQRESPDDGGWHDLVAKGFIEYVDTEEEETTMISMTIND 580

Query: 718 --ESGIRPG-----VTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNT 770
              + I P        TH EI P  +LGVCA I              +P+P HNQ+PRNT
Sbjct: 581 LITARINPEEAYSETYTHCEIHPSLILGVCASI--------------IPFPDHNQSPRNT 626

Query: 771 YQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAG 822
           YQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F +LPAG
Sbjct: 627 YQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG 678



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 37/78 (47%), Positives = 54/78 (69%)

Query: 1187 VSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQED 1246
             S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   QED
Sbjct: 796  TSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 855

Query: 1247 MPFNESGICPDIIMNPHG 1264
            MP+   GI PDII+NPH 
Sbjct: 856  MPWTVEGITPDIIVNPHA 873



 Score = 54.7 bits (130), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 14/114 (12%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A++ L    + H+ V       KA Y   +I R++L        DDRD+YGNKRL+LAG 
Sbjct: 239 AKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP 298

Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYGN 555
           LL  +F  +F++   ++           K+ NL   +    + SG  + L  GN
Sbjct: 299 LLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGN 352



 Score = 43.9 bits (102), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 19/68 (27%)

Query: 358 PHECRLRDLTYSAPITVDIEYTRGSQRVVR--------------SDLVIGRMPIMLQSSK 403
           P   RLR+LTYSAP+ VD+     ++R+++              + + IG++PIML+SS 
Sbjct: 7   PKAARLRNLTYSAPLYVDV-----TKRIIKKGHDCEEVTETQEFTKVFIGKVPIMLRSSY 61

Query: 404 CVLRNKTE 411
           C L   +E
Sbjct: 62  CTLYQNSE 69


>gi|295661506|ref|XP_002791308.1| DNA-directed RNA polymerase II subunit RPB2 [Paracoccidioides sp.
            'lutzii' Pb01]
 gi|226280870|gb|EEH36436.1| DNA-directed RNA polymerase II subunit RPB2 [Paracoccidioides sp.
            'lutzii' Pb01]
          Length = 1258

 Score =  219 bits (557), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 107/263 (40%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R++T+   L Y Q+P+  ++++    F
Sbjct: 787  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSMEFLKF 846

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR      K       +R 
Sbjct: 847  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMVGMTVVERF 906

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAISMATPEYKE 1092
              P+     R     +  +D DGIVAPG ++    +++ K+ P       +   T ++ +
Sbjct: 907  EKPMRSDTLRMKHGTYDKVDDDGIVAPGVRVSGEDIIIGKTAPLAPDAEELGQRTKQHTK 966

Query: 1093 VPVS--YKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            V VS   + +    +++VL+S++++D   +K+  R T+ P+IGDKF+SRHGQKG IG+  
Sbjct: 967  VDVSTPLRSTESGIVDQVLISTSNDDLKFVKVRTRTTKIPQIGDKFASRHGQKGTIGITY 1026

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 1027 RQEDMPFTREGITPDIIINPHAI 1049



 Score =  182 bits (462), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 99/254 (38%), Positives = 144/254 (56%), Gaps = 15/254 (5%)

Query: 1129 RPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRIT 1180
            +P   D    +HG        G++  G+ V  ED+   ++       + P   +   R  
Sbjct: 908  KPMRSDTLRMKHGTYDKVDDDGIVAPGVRVSGEDIIIGKTAP-----LAPDAEELGQRTK 962

Query: 1181 EYKEVPVS--YKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVI 1238
            ++ +V VS   + +    +++VL+S++++D   +K+  R T+ P+IGDKF+SRHGQKG I
Sbjct: 963  QHTKVDVSTPLRSTESGIVDQVLISTSNDDLKFVKVRTRTTKIPQIGDKFASRHGQKGTI 1022

Query: 1239 GLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGT 1298
            G+   QEDMPF   GI PDII+NPH  PSRMT+  LIE    K   + G   + T F   
Sbjct: 1023 GITYRQEDMPFTREGITPDIIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTDV 1082

Query: 1299 KLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGP 1358
             +  +   L  HGY  +G ++ Y+G TG  L A I+ GP YYQ+L+HMV DKIHAR+RGP
Sbjct: 1083 TVDSISGLLREHGYQSRGFEVMYNGHTGRKLVAQIFLGPTYYQRLRHMVDDKIHARARGP 1142

Query: 1359 RVVLTRQPTGRRWK 1372
              +LTRQP   R +
Sbjct: 1143 TQILTRQPVEGRAR 1156



 Score =  110 bits (276), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 55/144 (38%), Positives = 85/144 (59%), Gaps = 3/144 (2%)

Query: 192 MRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRK 250
           ++  T++  L  A+ TGNW   ++    + GV+QVL+R +Y S L  + R N+   +  K
Sbjct: 470 VKASTLSGGLKYALATGNWGEQKKAASSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGK 529

Query: 251 VSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIA 310
           ++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT     + ++  M    +E + 
Sbjct: 530 IAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLE 589

Query: 311 MFNGEELSSPGVYLVFVNGILAGI 334
            F  E   SP    VFVNG+  G+
Sbjct: 590 EF--EPQVSPNATKVFVNGVWVGV 611



 Score = 88.2 bits (217), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/100 (42%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 771 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 816

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R++T+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 817 FDQRMETMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 856



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 44/78 (56%), Gaps = 2/78 (2%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMV-LALSDPDMLDDRDYYGNKRLELAG 514
           ARD +    + HI         KA +L  M+ R++  AL   D +DDRD++G KRL+LAG
Sbjct: 374 ARDIIQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRD-VDDRDHFGKKRLDLAG 432

Query: 515 SLLSLMFEDVFKRFNSEL 532
            LL+ +F  +F R   +L
Sbjct: 433 PLLANLFRILFMRVTKDL 450



 Score = 42.7 bits (99), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 9/62 (14%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSD---------VDPLFYL 164
           D W ++ SF + KGLV   +DSFD FI+  +++L++    +  D         VDP+   
Sbjct: 24  DCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTLAPSEDEVDPVVLR 83

Query: 165 KY 166
           +Y
Sbjct: 84  RY 85


>gi|225680527|gb|EEH18811.1| DNA-directed RNA polymerase II subunit RPB2 [Paracoccidioides
            brasiliensis Pb03]
 gi|226292836|gb|EEH48256.1| DNA-directed RNA polymerase II subunit RPB2 [Paracoccidioides
            brasiliensis Pb18]
          Length = 1258

 Score =  219 bits (557), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 107/263 (40%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R++T+   L Y Q+P+  ++++    F
Sbjct: 787  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSMEFLKF 846

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR      K       +R 
Sbjct: 847  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMVGMTVVERF 906

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAISMATPEYKE 1092
              P+     R     +  +D DGIVAPG ++    +++ K+ P       +   T ++ +
Sbjct: 907  EKPMRSDTLRMKHGTYDKVDDDGIVAPGVRVSGEDIIIGKTAPLAPDAEELGQRTKQHTK 966

Query: 1093 VPVS--YKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            V VS   + +    +++VL+S++++D   +K+  R T+ P+IGDKF+SRHGQKG IG+  
Sbjct: 967  VDVSTPLRSTESGIVDQVLISTSNDDLKFVKVRTRTTKIPQIGDKFASRHGQKGTIGITY 1026

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 1027 RQEDMPFTREGITPDIIINPHAI 1049



 Score =  182 bits (462), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 99/260 (38%), Positives = 147/260 (56%), Gaps = 15/260 (5%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESGICPDIIMNPHGLK 1174
            ++ +  +P   D    +HG        G++  G+ V  ED+   ++       + P   +
Sbjct: 902  VVERFEKPMRSDTLRMKHGTYDKVDDDGIVAPGVRVSGEDIIIGKTAP-----LAPDAEE 956

Query: 1175 GCDRITEYKEVPVS--YKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRH 1232
               R  ++ +V VS   + +    +++VL+S++++D   +K+  R T+ P+IGDKF+SRH
Sbjct: 957  LGQRTKQHTKVDVSTPLRSTESGIVDQVLISTSNDDLKFVKVRTRTTKIPQIGDKFASRH 1016

Query: 1233 GQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEG 1292
            GQKG IG+   QEDMPF   GI PDII+NPH  PSRMT+  LIE    K   + G   + 
Sbjct: 1017 GQKGTIGITYRQEDMPFTREGITPDIIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDA 1076

Query: 1293 TAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIH 1352
            T F    +  +   L  HGY  +G ++ Y+G TG  L A I+ GP YYQ+L+HMV DKIH
Sbjct: 1077 TPFTDVTVDSISGLLREHGYQSRGFEVMYNGHTGRKLVAQIFLGPTYYQRLRHMVDDKIH 1136

Query: 1353 ARSRGPRVVLTRQPTGRRWK 1372
            AR+RGP  +LTRQP   R +
Sbjct: 1137 ARARGPTQILTRQPVEGRAR 1156



 Score =  110 bits (276), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 55/144 (38%), Positives = 85/144 (59%), Gaps = 3/144 (2%)

Query: 192 MRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRK 250
           ++  T++  L  A+ TGNW   ++    + GV+QVL+R +Y S L  + R N+   +  K
Sbjct: 470 VKASTLSGGLKYALATGNWGEQKKAASSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGK 529

Query: 251 VSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIA 310
           ++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT     + ++  M    +E + 
Sbjct: 530 IAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLE 589

Query: 311 MFNGEELSSPGVYLVFVNGILAGI 334
            F  E   SP    VFVNG+  G+
Sbjct: 590 EF--EPQVSPNATKVFVNGVWVGV 611



 Score = 88.2 bits (217), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/100 (42%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 771 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 816

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R++T+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 817 FDQRMETMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 856



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 44/78 (56%), Gaps = 2/78 (2%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMV-LALSDPDMLDDRDYYGNKRLELAG 514
           ARD +    + HI         KA +L  M+ R++  AL   D +DDRD++G KRL+LAG
Sbjct: 374 ARDIIQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRD-VDDRDHFGKKRLDLAG 432

Query: 515 SLLSLMFEDVFKRFNSEL 532
            LL+ +F  +F R   +L
Sbjct: 433 PLLANLFRILFMRVTKDL 450



 Score = 42.7 bits (99), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 9/62 (14%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSD---------VDPLFYL 164
           D W ++ SF + KGLV   +DSFD FI+  +++L++    +  D         VDP+   
Sbjct: 24  DCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTLAPSEDEVDPVVLR 83

Query: 165 KY 166
           +Y
Sbjct: 84  RY 85


>gi|225562623|gb|EEH10902.1| DNA-dependent RNA polymerase II RPB140 [Ajellomyces capsulatus
            G186AR]
          Length = 1307

 Score =  219 bits (557), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 162/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R++T+   L Y Q+P+  ++++    F
Sbjct: 889  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSMEFLKF 948

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR      K       +R 
Sbjct: 949  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMVGMTVVERF 1008

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAISMATPEYKE 1092
              P+     R     +  +D DGIVAPG ++    +++ K+ P       +   T ++ +
Sbjct: 1009 EKPMRSDTLRMKHGTYDKVDDDGIVAPGVRVSGEDIIIGKTAPLAPEAEELGQRTKQHTK 1068

Query: 1093 VPVS--YKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            + VS   + +    +++VLVS++++D   +K+ +R T+ P+IGDKF+SRHGQKG IG+  
Sbjct: 1069 IDVSTPLRSTESGIVDQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITY 1128

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PD+I+NPH +
Sbjct: 1129 RQEDMPFTREGIVPDLIINPHAI 1151



 Score =  183 bits (465), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 97/260 (37%), Positives = 148/260 (56%), Gaps = 15/260 (5%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESGICPDIIMNPHGLK 1174
            ++ +  +P   D    +HG        G++  G+ V  ED+   ++       + P   +
Sbjct: 1004 VVERFEKPMRSDTLRMKHGTYDKVDDDGIVAPGVRVSGEDIIIGKTAP-----LAPEAEE 1058

Query: 1175 GCDRITEYKEVPVS--YKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRH 1232
               R  ++ ++ VS   + +    +++VLVS++++D   +K+ +R T+ P+IGDKF+SRH
Sbjct: 1059 LGQRTKQHTKIDVSTPLRSTESGIVDQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRH 1118

Query: 1233 GQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEG 1292
            GQKG IG+   QEDMPF   GI PD+I+NPH  PSRMT+  LIE    K   + G   + 
Sbjct: 1119 GQKGTIGITYRQEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDA 1178

Query: 1293 TAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIH 1352
            T F    +  +   L  HGY  +G ++ Y+G TG  L A ++ GP YYQ+L+HMV DKIH
Sbjct: 1179 TPFTDVTVDSISSLLREHGYQSRGFEVMYNGYTGRKLVAQVFLGPTYYQRLRHMVDDKIH 1238

Query: 1353 ARSRGPRVVLTRQPTGRRWK 1372
            AR+RGP  +LTRQP   R +
Sbjct: 1239 ARARGPTQILTRQPVEGRAR 1258



 Score =  109 bits (272), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 55/144 (38%), Positives = 84/144 (58%), Gaps = 3/144 (2%)

Query: 192 MRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRK 250
           ++  T++  L  A+ TGNW   ++    + GV+QVL+R +Y S L  + R N+   +  K
Sbjct: 572 VKASTLSGGLKYALATGNWGEQKKAASSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGK 631

Query: 251 VSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIA 310
           ++ PR L  + WG++CP++TPEG+ACGLVKNLALM  IT     + ++  M    +E + 
Sbjct: 632 IAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCCITVGTPSEPIIDFMIQRNMEVLE 691

Query: 311 MFNGEELSSPGVYLVFVNGILAGI 334
            F  E   SP    VFVNG+  G+
Sbjct: 692 EF--EPQVSPNATKVFVNGVWVGV 713



 Score = 88.6 bits (218), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/100 (42%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 873 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 918

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R++T+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 919 FDQRMETMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 958



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 44/78 (56%), Gaps = 2/78 (2%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMV-LALSDPDMLDDRDYYGNKRLELAG 514
           ARD +    + HI         KA +L  M+ R++  AL   D +DDRD++G KRL+LAG
Sbjct: 476 ARDIIQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRD-VDDRDHFGKKRLDLAG 534

Query: 515 SLLSLMFEDVFKRFNSEL 532
            LL+ +F  +F R   +L
Sbjct: 535 PLLANLFRILFMRVTKDL 552



 Score = 42.0 bits (97), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 9/62 (14%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSD---------VDPLFYL 164
           D W ++ SF + KGLV   +DSFD FI+  +++L++    +  D         +DP+   
Sbjct: 126 DCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTLAPAEDEIDPVVLR 185

Query: 165 KY 166
           +Y
Sbjct: 186 RY 187


>gi|52699894|gb|AAU87008.1| DNA-dependent RNA polymerase II second largest subunit [Taphrina
            communis]
          Length = 731

 Score =  218 bits (556), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 110/288 (38%), Positives = 167/288 (57%), Gaps = 5/288 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG      Q R+DT+   L Y Q+P+  ++++    F
Sbjct: 379  IIPFPDHNQSPRNTYQSAMGKQAMGXXXXXYQVRMDTMANILYYPQKPLATTRSMEYLKF 438

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR  +   ++         
Sbjct: 439  RELPAGQNAIVAILCYSGYNQEDSMIMNQSSIDRGLFRSMFYRVYQDSEEKIDMNQAQEF 498

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS-----AISMATP 1088
              P  E   R     +  L+ DG+VAPG ++    V+V K+   +        A   AT 
Sbjct: 499  EKPTRETTMRMKRSTYDKLEDDGLVAPGTRVSGEDVIVGKTAGLLKDENSADLAARSATQ 558

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
              ++V    + +    ++KV+VS+NS+    +K+ +R T+ P+IGDKF+SRHGQKG IG+
Sbjct: 559  TKRDVSTQLRSTEAGIIDKVMVSTNSDGHKFVKVRIRATKIPQIGDKFASRHGQKGTIGV 618

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSY 1196
                EDMPF   GI PD+I+NPH +     +    E  +S  GS+  +
Sbjct: 619  TYRNEDMPFTSEGIVPDLIINPHAIPSRMTVAHLVECQLSKVGSLSGF 666



 Score =  159 bits (403), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 76/171 (44%), Positives = 106/171 (61%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    + +    ++KV+VS+NS+    +K+ +R T+ P+IGDKF+SRHGQKG IG+  
Sbjct: 561  RDVSTQLRSTEAGIIDKVMVSTNSDGHKFVKVRIRATKIPQIGDKFASRHGQKGTIGVTY 620

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
              EDMPF   GI PD+I+NPH  PSRMTV  L+E    K G + G   + T F    +  
Sbjct: 621  RNEDMPFTSEGIVPDLIINPHAIPSRMTVAHLVECQLSKVGSLSGFEGDATPFTDVTVEA 680

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHA 1353
            V   L   GY+ +G +I Y+G TG  L A ++ GP YYQ+LKH+V DKI A
Sbjct: 681  VSNNLREQGYHSRGFEIMYNGHTGRKLMAQVFLGPTYYQRLKHLVDDKIXA 731



 Score =  111 bits (277), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 93/151 (61%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TG W  ++ +M  R GV+QVL+R +Y S L  + R N+
Sbjct: 43  EFNLPLAVKHTTITNGLRYSLATGTWGDQKKQMNARVGVSQVLNRYTYASTLSHLRRTNT 102

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM++++  +    +++ +  
Sbjct: 103 PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMSYVSVGSASAPIIEFLEE 162

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E +  +N      P    +FVNG+  G+
Sbjct: 163 WGMESLEDYN-PSAGRPSTK-IFVNGVWLGV 191



 Score = 90.9 bits (224), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 50/131 (38%), Positives = 68/131 (51%), Gaps = 20/131 (15%)

Query: 702 EYLDVNEGNDSHIAVSESGIRPGVT------THLEIAPFTLLGVCAGIELLQYNKRFHSP 755
           E  D +E      A +   +RP V       TH EI P  +LG+CA I            
Sbjct: 332 EPADADERERKIAAEAAKRLRPAVNKAQHLWTHCEIHPSMILGICASI------------ 379

Query: 756 GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 815
             +P+P HNQ+PRNTYQ AMGKQAMG      Q R+DT+   L Y Q+P+  ++++    
Sbjct: 380 --IPFPDHNQSPRNTYQSAMGKQAMGXXXXXYQVRMDTMANILYYPQKPLATTRSMEYLK 437

Query: 816 FHKLPAGKCQI 826
           F +LPAG+  I
Sbjct: 438 FRELPAGQNAI 448


>gi|384245445|gb|EIE18939.1| RNA polymerase II second largest subunit [Coccomyxa subellipsoidea
            C-169]
          Length = 1170

 Score =  218 bits (556), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 105/260 (40%), Positives = 157/260 (60%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DT  Y L Y Q+P+V ++ +   +F
Sbjct: 711  IIPFPDHNQSPRNTYQSAMGKQAMGMYVTNYQTRMDTQAYVLYYPQKPLVTTRAMEHLHF 770

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQN  +A+  YSGY+ ED+L+MN++S+DRGF R + +R  +   K+  +   + I
Sbjct: 771  RELPAGQNTIVAIACYSGYNQEDSLMMNQSSIDRGFFRSMFFRTYRAEEKKQGSLVQEVI 830

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKEV 1093
              P            +  LD DGI  PG ++    V++ K+ P              K+V
Sbjct: 831  EVPDRSVTVAMRHGTYDKLDDDGIAPPGTRVSGEDVIIGKTSPLADEQPGVAQRFSKKDV 890

Query: 1094 PVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQE 1153
              S + S    +++V+V++N+E    +K+ +R  R P++GDKF+SRHGQKG IG+   QE
Sbjct: 891  STSLRNSESGMIDQVMVTTNAEGQRFVKIRVRSIRIPQVGDKFASRHGQKGTIGMTYTQE 950

Query: 1154 DMPFNESGICPDIIMNPHGL 1173
            DMP+   GI PD+I+NPH +
Sbjct: 951  DMPWTSEGIVPDLIINPHAI 970



 Score =  182 bits (462), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 85/190 (44%), Positives = 120/190 (63%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            K+V  S + S    +++V+V++N+E    +K+ +R  R P++GDKF+SRHGQKG IG+  
Sbjct: 888  KDVSTSLRNSESGMIDQVMVTTNAEGQRFVKIRVRSIRIPQVGDKFASRHGQKGTIGMTY 947

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMP+   GI PD+I+NPH  PSRMT+G L+E L  K   + G   + T F    + +
Sbjct: 948  TQEDMPWTSEGIVPDLIINPHAIPSRMTIGHLVEALMSKVAALVGKEGDATPFAEVTVDN 1007

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
            +   L   GY  +G +  Y+G TG  L+A I+  P YYQ+LKHMV DKIH+R RGP  +L
Sbjct: 1008 ISAALHTCGYQSRGWETMYNGHTGRRLQAQIFLNPTYYQRLKHMVDDKIHSRGRGPVQIL 1067

Query: 1363 TRQPTGRRWK 1372
            TRQP   R +
Sbjct: 1068 TRQPVEGRAR 1077



 Score =  116 bits (291), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 61/157 (38%), Positives = 94/157 (59%), Gaps = 10/157 (6%)

Query: 182 KAAQFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRI 241
           +  + +++  + +DTIT  L  +I TGNW ++     R GV+QVL+RL+Y S L  + RI
Sbjct: 422 RGKEINLMAAVNKDTITRGLRYSIATGNWGMQGTAGMRAGVSQVLNRLTYASTLSHLRRI 481

Query: 242 NSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIM 301
           +S   +  K++ PR L  SQWG++CP++TPEG+ACGLVKNLALM++++       + + +
Sbjct: 482 SSPIGREGKLAKPRQLHNSQWGVICPAETPEGQACGLVKNLALMSYVSVGCPSAPIGEFL 541

Query: 302 YNIGIEHIAMFNGEELSSPGVYL----VFVNGILAGI 334
                E++   N      P V L    VFVNG+  GI
Sbjct: 542 EEWSTENLEEIN------PSVILEATKVFVNGVWVGI 572



 Score =  104 bits (260), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 58/145 (40%), Positives = 81/145 (55%), Gaps = 24/145 (16%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVS----ESGIRPG------VTTHLEIAPFTLLGVCA 741
           +++ +++G IEY+D  E   + IA+     E+   PG        TH EI P  +LGVCA
Sbjct: 650 WNELVHKGCIEYIDTEEEETTMIAMEIKDLENARTPGRVAYSETYTHCEIHPSMILGVCA 709

Query: 742 GIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYA 801
            I              +P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DT  Y L Y 
Sbjct: 710 SI--------------IPFPDHNQSPRNTYQSAMGKQAMGMYVTNYQTRMDTQAYVLYYP 755

Query: 802 QRPMVESKTIRITNFHKLPAGKCQI 826
           Q+P+V ++ +   +F +LPAG+  I
Sbjct: 756 QKPLVTTRAMEHLHFRELPAGQNTI 780



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 56/115 (48%), Gaps = 16/115 (13%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVL-ALSDPDMLDDRDYYGNKRLELAG 514
           ARD L    + H+ +       KA +   M+ R++L AL   D  DDRD+Y NKRL+L G
Sbjct: 336 ARDILQREMLPHVAIGEFSETKKAYFFGYMVHRLLLVALGRRDQ-DDRDHYCNKRLDLGG 394

Query: 515 SLLSLMFEDVFKRFNSEL-----------KETNLSGVVN---LVSGWWFELKYGN 555
            LL+ +F  +F++   ++           KE NL   VN   +  G  + +  GN
Sbjct: 395 PLLANLFRQLFRKLTKDVRSHVQKAVDRGKEINLMAAVNKDTITRGLRYSIATGN 449



 Score = 47.4 bits (111), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 9/79 (11%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYT---------RGSQRVVRSDLV 391
           + KP + E+   T    P E RLR+LTY+AP+ +DI+ T           ++      + 
Sbjct: 90  LSKPTMTEADGETVVLFPKEARLRNLTYAAPLYIDIKKTVITRVPNGEAETEEESYPKIF 149

Query: 392 IGRMPIMLQSSKCVLRNKT 410
           IG +PIML+SS C L  +T
Sbjct: 150 IGEVPIMLRSSYCSLHERT 168


>gi|83415485|gb|ABC17950.1| RNA polymerase II second largest subunit, partial [Rhopalomyces
            elegans]
          Length = 723

 Score =  218 bits (556), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 165/263 (62%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL   + Y Q+P+V ++ +    F
Sbjct: 348  IIPFPDHNQSPRNTYQSAMGKQAMGVYLTNYQLRMDTLANIIYYPQKPLVTTRAMEYLKF 407

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
              LPAGQNAT+A++ YSGY+ ED++IMN++S+DRG  R L YR      K+   +  +  
Sbjct: 408  RDLPAGQNATVAILCYSGYNQEDSVIMNQSSIDRGLFRSLFYRCYMDQEKKAGVKVMEEF 467

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSA-ISMATPEY-- 1090
              P  +A  R     +  L+ DG++APG ++    +++ K+ P    SA +   T  +  
Sbjct: 468  EKPTRDATLRMKHGTYDKLEDDGLIAPGVRVSGEDIIIGKTAPLPEESAELGQRTRSHTR 527

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            +++    + +    +++V++++N E    +K+ +R TR P++GDKF+SRHGQKG IG+  
Sbjct: 528  RDISTPLRSTETGIVDQVMLTTNQEGVKFVKVRVRSTRIPQMGDKFASRHGQKGTIGITY 587

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF+  GI PD+I+NPH +
Sbjct: 588  RQEDMPFSADGIVPDLIINPHAI 610



 Score =  184 bits (467), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 81/188 (43%), Positives = 124/188 (65%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            +++    + +    +++V++++N E    +K+ +R TR P++GDKF+SRHGQKG IG+  
Sbjct: 528  RDISTPLRSTETGIVDQVMLTTNQEGVKFVKVRVRSTRIPQMGDKFASRHGQKGTIGITY 587

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF+  GI PD+I+NPH  PSRMT+G ++E L  K   + G+  + T F    +  
Sbjct: 588  RQEDMPFSADGIVPDLIINPHAIPSRMTIGHMVECLLSKVSTLTGSEGDATPFTDVTVDA 647

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
            + + L  HG++ +G ++ Y+G TG  L A ++ GP YYQ+LKHMV DKIH+R+RGP  +L
Sbjct: 648  ISKALAVHGFHQRGFEVIYNGHTGRKLTAQVFLGPTYYQRLKHMVDDKIHSRARGPVQIL 707

Query: 1363 TRQPTGRR 1370
            TRQP   R
Sbjct: 708  TRQPVEGR 715



 Score =  118 bits (296), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 60/153 (39%), Positives = 94/153 (61%), Gaps = 9/153 (5%)

Query: 186 FDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINSQ 244
           F++   ++  T+TN L  ++ TGNW  ++  M+ R GV+QVL+R ++ S L  + R N+ 
Sbjct: 40  FNLTLAVKSTTLTNGLKYSLATGNWGDQKKAMQARAGVSQVLNRYTFASTLSHLRRCNTP 99

Query: 245 FEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNI 304
             +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALMTHI+     + +++ +   
Sbjct: 100 IGRDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMTHISVGAPSRPVIEFL--- 156

Query: 305 GIEHIAMFNGEELSSPG---VYLVFVNGILAGI 334
             E  AM N +E+   G      VFVNG+  G+
Sbjct: 157 --EEWAMVNLDEMYKTGTADATKVFVNGVWVGV 187



 Score = 92.0 bits (227), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/159 (35%), Positives = 78/159 (49%), Gaps = 41/159 (25%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVS-----------ESGI-RP---------------G 724
           ++  + EG IE++D  E   + I +S           E+G+ RP                
Sbjct: 270 WNRLISEGVIEFIDTEEEETAMICMSPEDLAEAREYYETGVPRPPSRDPAARISTTIYSH 329

Query: 725 VTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIG 784
             TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG   
Sbjct: 330 TWTHCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVYL 375

Query: 785 YNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
            N Q R+DTL   + Y Q+P+V ++ +    F  LPAG+
Sbjct: 376 TNYQLRMDTLANIIYYPQKPLVTTRAMEYLKFRDLPAGQ 414


>gi|240103983|ref|YP_002960292.1| DNA-directed RNA polymerase subunit B [Thermococcus gammatolerans
            EJ3]
 gi|239911537|gb|ACS34428.1| DNA-directed RNA polymerase subunit B (rpoB) [Thermococcus
            gammatolerans EJ3]
          Length = 1122

 Score =  218 bits (556), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 111/264 (42%), Positives = 163/264 (61%), Gaps = 4/264 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            LVPYP HN APRNTY   M KQ++G    N + R+DT  + + Y Q P+V S+ ++   F
Sbjct: 655  LVPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLMHYPQVPLVNSRIMKAVGF 714

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             + PAGQN  +AV+SY GY++EDA+++NKAS++RG  R   +R  +   K+Y     DR 
Sbjct: 715  EERPAGQNFVVAVLSYGGYNMEDAIVINKASIERGLARSTFFRTYEAEEKRYLGGQMDRF 774

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAIS----MATPE 1089
              P            +R LD+DGI+ P  ++  + VLV ++ P   +   S    +A  E
Sbjct: 775  EKPDPTIKGYLGDRYYRNLDEDGIIFPESKVEGKDVLVGRTSPPRFLEEQSGLGGIALQE 834

Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             +E  V+ + S    ++KV+++   +   L+K+ +R  R PE+GDKF+SRHGQKGVIGLI
Sbjct: 835  RRETSVAVRPSEKGIVDKVIITETGDGTKLVKVTVRDLRIPELGDKFASRHGQKGVIGLI 894

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
            V QEDMP+ E+GI PD+I+NPHG+
Sbjct: 895  VPQEDMPWTENGIVPDLIVNPHGI 918



 Score =  203 bits (516), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 110/241 (45%), Positives = 156/241 (64%), Gaps = 4/241 (1%)

Query: 1132 IGDKFSSRHGQKGVI--GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSY 1189
            +GD++     + G+I     VE +D+    +   P  +    GL G   + E +E  V+ 
Sbjct: 785  LGDRYYRNLDEDGIIFPESKVEGKDVLVGRTS-PPRFLEEQSGLGGI-ALQERRETSVAV 842

Query: 1190 KGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPF 1249
            + S    ++KV+++   +   L+K+ +R  R PE+GDKF+SRHGQKGVIGLIV QEDMP+
Sbjct: 843  RPSEKGIVDKVIITETGDGTKLVKVTVRDLRIPELGDKFASRHGQKGVIGLIVPQEDMPW 902

Query: 1250 NESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIR 1309
             E+GI PD+I+NPHG PSRMTVG+LIE + GK   ++G   +GTAF G     +++EL  
Sbjct: 903  TENGIVPDLIVNPHGIPSRMTVGQLIEAIGGKVASLKGRRVDGTAFIGEPEEKLRKELEE 962

Query: 1310 HGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGR 1369
             G+ + G+++ Y GITG  LEA I+ G +YYQ+L HMV DK+HARSRGP  VLT+QPT  
Sbjct: 963  LGFKHTGREVMYDGITGRRLEADIFIGVIYYQRLHHMVADKMHARSRGPVQVLTKQPTEG 1022

Query: 1370 R 1370
            R
Sbjct: 1023 R 1023



 Score =  106 bits (265), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 57/156 (36%), Positives = 88/156 (56%), Gaps = 9/156 (5%)

Query: 188 IVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEK 247
           + N +R D ++  +  A+ TG+W        R GV+Q+L R +YIS L  + R+ S   +
Sbjct: 393 VRNSVRPDVLSERIEHALATGSWP-----GGRTGVSQLLDRTNYISTLSHLRRVTSPLSR 447

Query: 248 TRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIE 307
            +     R L G+ WG +CP++TPEG  CGLVKNLALM+ ITT   E+ + + +  +G+ 
Sbjct: 448 EQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMSQITTGIPEEEVKEYILKLGVV 507

Query: 308 HIAMFNGEELSSPGVYLVFVNGILAGITCHHKEVCK 343
            I     E   SPG+Y V++NG+L G     K + +
Sbjct: 508 PIE----ERRPSPGLYRVYLNGVLIGTIEDGKALVQ 539



 Score = 84.7 bits (208), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/137 (35%), Positives = 71/137 (51%), Gaps = 25/137 (18%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIA-----VSESGIRPGVTTHLEIAPFTLLGVCAGIELL 746
           + D +  G IEYLD  E  ++++A     V+E        THLE+ P  +LG+ A     
Sbjct: 605 WSDLIRMGVIEYLDAEEEENAYVATWPWEVTEE------HTHLELMPAAILGIPAS---- 654

Query: 747 QYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMV 806
                     LVPYP HN APRNTY   M KQ++G    N + R+DT  + + Y Q P+V
Sbjct: 655 ----------LVPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLMHYPQVPLV 704

Query: 807 ESKTIRITNFHKLPAGK 823
            S+ ++   F + PAG+
Sbjct: 705 NSRIMKAVGFEERPAGQ 721



 Score = 43.1 bits (100), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 37/59 (62%), Gaps = 1/59 (1%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           D W ++ S+ KEKGLV+ H+DS++ FI   +++++     +  D+ P F +K+  I +G
Sbjct: 15  DLWIVMESYWKEKGLVRQHLDSYNAFIEHGLQEVINEFGGVKPDI-PNFEVKFGKIRLG 72



 Score = 42.4 bits (98), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 40/78 (51%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A   + +  + H+ V     K KA YL +M  +++         DD+D+Y NKRL+LAG 
Sbjct: 293 AEHIIDNNLLPHMGVEPENRKAKAYYLGMMALKVLELSLGLRGEDDKDHYANKRLKLAGD 352

Query: 516 LLSLMFEDVFKRFNSELK 533
           LL  +F   F +   +++
Sbjct: 353 LLKDLFRVAFGQLVKDMQ 370


>gi|67810699|gb|AAY82002.1| RNA polymerase II second largest subunit [Selaginella erythropus]
          Length = 581

 Score =  218 bits (556), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 110/262 (41%), Positives = 161/262 (61%), Gaps = 3/262 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 208  IIPFPDHNQSPRNTYQSAMGKQAMGIHVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHF 267

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R + YR+ +   K+      +  
Sbjct: 268  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSIFYRSYRDEEKKAGTLVKEEF 327

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEY--K 1091
              P  E  T      +  LD DGI  PG ++    V++ K+ P ++    S     Y  +
Sbjct: 328  ERPNRETTTGMRHGSYDKLDDDGIAPPGTRVSGEDVIIGKTTP-VTQDETSTQAQRYTKR 386

Query: 1092 EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVE 1151
            +     + S    +++VL+++N++    +K  +R  R P+IGDKFSSRHGQKG IG+   
Sbjct: 387  DQSTCLRHSESGMIDQVLLTTNADGLRFVKTRVRSIRIPQIGDKFSSRHGQKGTIGMTYT 446

Query: 1152 QEDMPFNESGICPDIIMNPHGL 1173
            QEDMPF + GI PDII+NPH +
Sbjct: 447  QEDMPFTQEGITPDIIVNPHAI 468



 Score =  184 bits (468), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 86/174 (49%), Positives = 117/174 (67%)

Query: 1197 LEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICP 1256
            +++VL+++N++    +K  +R  R P+IGDKFSSRHGQKG IG+   QEDMPF + GI P
Sbjct: 400  IDQVLLTTNADGLRFVKTRVRSIRIPQIGDKFSSRHGQKGTIGMTYTQEDMPFTQEGITP 459

Query: 1257 DIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQG 1316
            DII+NPH  PSRMT+G+LIE + GK   + G   + T F    + ++ + L + GY  +G
Sbjct: 460  DIIVNPHAIPSRMTIGQLIECIMGKVAALMGKEGDATPFTDVTVDNISKALHKCGYQMRG 519

Query: 1317 KDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRR 1370
             +  Y+G TG  L A I+ GP YYQ+LKHMV DKIH+R RGP  +LTRQP   R
Sbjct: 520  FETMYNGHTGRRLNAMIFIGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGR 573



 Score = 95.9 bits (237), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/171 (35%), Positives = 85/171 (49%), Gaps = 39/171 (22%)

Query: 677 RPTFLNMHQFLGFKRFD---------------DFLYEGKIEYLDVNEGNDSHIAVS---- 717
           RP F+   Q L  K+ D               + + +G IEY+D  E   + I+++    
Sbjct: 117 RPLFIVEKQRLLIKKSDIRALQQKEAGENGWHELVAKGFIEYVDTEEEETTMISMTILDL 176

Query: 718 -ESGIRPG-----VTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTY 771
             + + P        TH EI P  +LGVC  I              +P+P HNQ+PRNTY
Sbjct: 177 VNARLNPDEAYSDTYTHCEIHPSMILGVCGSI--------------IPFPDHNQSPRNTY 222

Query: 772 QCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAG 822
           Q AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F +LPAG
Sbjct: 223 QSAMGKQAMGIHVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG 273



 Score = 67.8 bits (164), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 37/82 (45%), Positives = 50/82 (60%), Gaps = 11/82 (13%)

Query: 262 WGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMFNGEELSS-- 319
           WGM+CP++TPEG+ACGLVKNLALM +IT  +    +L     + +E  +  N EE+S   
Sbjct: 1   WGMMCPAETPEGQACGLVKNLALMAYITVGSAANPIL-----VFLEEWSTENFEEISPAV 55

Query: 320 -PGVYLVFVNGILAGITCHHKE 340
            P    +FVNG   GI   H+E
Sbjct: 56  IPNSTKIFVNGAWVGI---HRE 74


>gi|45545357|gb|AAS67526.1| DNA-dependent RNA polymerase II second largest subunit, partial
            [Xanthoria polycarpa]
          Length = 893

 Score =  218 bits (556), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 115/287 (40%), Positives = 168/287 (58%), Gaps = 5/287 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 551  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDERMDTMANILYYPQKPLATTRSMEFLKF 610

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR      K+      +  
Sbjct: 611  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYVDTEKRVGMTVLENF 670

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMA--TPEY- 1090
              PL     +     +  LD DG+VAPG ++    V++ K+ P I+  A  M   T  + 
Sbjct: 671  EKPLRTETLKLKHGTYDKLDDDGLVAPGVRVSGEDVIIGKTTP-IAPDAQEMGQRTKSHI 729

Query: 1091 -KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             K+     + +    ++KVL+S+NSE    +K+ +R T+ P+IGDKF+SRHGQKG IG+ 
Sbjct: 730  KKDASTPLRSTENGIVDKVLLSTNSEGLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGIT 789

Query: 1150 VEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSY 1196
              QEDMPF   G+ PD+I+NPH +     I    E  +S   S+  Y
Sbjct: 790  YRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGY 836



 Score =  149 bits (375), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 70/163 (42%), Positives = 100/163 (61%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            K+     + +    ++KVL+S+NSE    +K+ +R T+ P+IGDKF+SRHGQKG IG+  
Sbjct: 731  KDASTPLRSTENGIVDKVLLSTNSEGLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITY 790

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   G+ PD+I+NPH  PSRMT+  LIE    K   + G   + T F    +  
Sbjct: 791  RQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGYEGDATPFTEITVDS 850

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKH 1345
            V + L  HGY  +G ++ Y+G TG  L A ++ GP YYQ+L+H
Sbjct: 851  VSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRH 893



 Score =  113 bits (282), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 56/155 (36%), Positives = 94/155 (60%), Gaps = 5/155 (3%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++Q+T+++ L  ++ TGNW   ++    + GV+QVL+R ++ S L  + R N+
Sbjct: 227 EFNLALGVKQNTLSSGLKYSLATGNWGDQKKAASAKAGVSQVLNRYTFASTLSHLRRTNT 286

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT       ++  + N
Sbjct: 287 PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPADPIVDYLTN 346

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGITCHH 338
            G+E +  +  E   +P    VFVNG   G  CH+
Sbjct: 347 RGMESLEEY--EPTRAPHATKVFVNGTWIG--CHN 377



 Score = 90.5 bits (223), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 535 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 580

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 581 YDERMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 620



 Score = 56.6 bits (135), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 41/115 (35%), Positives = 58/115 (50%), Gaps = 16/115 (13%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMV-LALSDPDMLDDRDYYGNKRLELAG 514
           ARD L    + HI         KA +L  MI RM+  AL   D +DDRD++G KRL+LAG
Sbjct: 138 ARDVLQKELLPHISQTEGSETRKAFFLGYMIHRMLQCALGRRD-VDDRDHFGKKRLDLAG 196

Query: 515 SLLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYGN 555
            LL+ +F  +F++   ++           +E NL+  V    L SG  + L  GN
Sbjct: 197 PLLAGLFRMLFQKLTKDIYKYLQKCVESNREFNLALGVKQNTLSSGLKYSLATGN 251


>gi|46277249|gb|AAS86815.1| RNA polymerase II second largest subunit, partial [Selaginella densa]
          Length = 547

 Score =  218 bits (556), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 113/270 (41%), Positives = 165/270 (61%), Gaps = 19/270 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 200  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHF 259

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R + YR+ +           +R 
Sbjct: 260  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSIFYRSYR---------DEERK 310

Query: 1034 LGPLLEADTRKPV------YRH---RALDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
             G L++ +  KP        RH     LD DGI  PG ++    V++ K+ P       +
Sbjct: 311  QGTLVKEEFEKPSRDSTKDMRHGSYEKLDDDGITPPGTRVSGEDVIIGKTTPLGQDETGA 370

Query: 1085 MATPEYK-EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1143
             A    K +   S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQK
Sbjct: 371  QAQRYTKRDQSTSLRHSESGMVDQVLLTTNADGLRFVKIRVRSIRIPQIGDKFSSRHGQK 430

Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G +G+   QEDMPF + GI PDII+NPH +
Sbjct: 431  GTVGMTYTQEDMPFTQEGITPDIIVNPHAI 460



 Score =  167 bits (422), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 77/170 (45%), Positives = 111/170 (65%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++   S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+  
Sbjct: 378  RDQSTSLRHSESGMVDQVLLTTNADGLRFVKIRVRSIRIPQIGDKFSSRHGQKGTVGMTY 437

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF + GI PDII+NPH  PSRMT+G+LIE + GK   + G   + T F    + +
Sbjct: 438  TQEDMPFTQEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAALMGKEGDATPFTDVTVDN 497

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIH 1352
            + + L + GY  +G +  Y+G TG  L A I+ GP YYQ+LKHMV DKIH
Sbjct: 498  ISKALHKCGYQMRGFETMYNGHTGRKLSAMIFIGPTYYQRLKHMVDDKIH 547



 Score =  102 bits (254), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/170 (37%), Positives = 87/170 (51%), Gaps = 38/170 (22%)

Query: 677 RPTFLNMHQFLGFKRFD---------------DFLYEGKIEYLDVNEGNDSHIAVS---- 717
           RP F+   Q L  K+ D               D + +G IE++D  E   + I+++    
Sbjct: 110 RPLFIVEKQRLLIKKSDIRTLQQKEAGENGWHDLVTKGFIEFVDTEEEETTMISMTINDL 169

Query: 718 -ESGIRPG----VTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQ 772
             + + PG      TH EI P  +LGVCA I              +P+P HNQ+PRNTYQ
Sbjct: 170 VNARLNPGDAYSTYTHCEIHPSMILGVCASI--------------IPFPDHNQSPRNTYQ 215

Query: 773 CAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAG 822
            AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F +LPAG
Sbjct: 216 SAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG 265



 Score = 50.1 bits (118), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 43/75 (57%), Gaps = 11/75 (14%)

Query: 269 DTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMFNGEELSS---PGVYLV 325
           +TPEG+ACGLVKNLALM +IT  +    +L     + +E  +  N EE+S    P    +
Sbjct: 1   ETPEGQACGLVKNLALMAYITVGSAANPIL-----VFLEEWSTENFEEISPAAIPNSTKI 55

Query: 326 FVNGILAGITCHHKE 340
           FVNG   GI   H+E
Sbjct: 56  FVNGSWVGI---HRE 67


>gi|113957802|gb|ABI49123.1| RNA polymerase II second largest subunit [Teloschistes exilis]
          Length = 709

 Score =  218 bits (556), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 115/287 (40%), Positives = 169/287 (58%), Gaps = 5/287 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 361  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDERMDTMANILYYPQKPLATTRSMEFLKF 420

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR      K+      ++ 
Sbjct: 421  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYVDTEKRVGMTVLEKF 480

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMA--TPEY- 1090
              PL     +     +  LD DG+VAPG ++    V++ K+ P I+  A  M   T  + 
Sbjct: 481  ERPLRSETLKLKHGTYDKLDDDGLVAPGVRVSGDDVIIGKTTP-IAPDAEEMGQRTKNHI 539

Query: 1091 -KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             K+     + +    ++KVL+S+NSE    +K+ +R T+ P+IGDKF+SRHGQKG IG+ 
Sbjct: 540  KKDTSTPLRSTENGIVDKVLLSTNSEGLKFVKVRMRTTKVPQIGDKFASRHGQKGTIGIT 599

Query: 1150 VEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSY 1196
              QEDMPF   G+ PD+I+NPH +     I    E  +S   S+  Y
Sbjct: 600  YRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGY 646



 Score =  157 bits (396), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 73/155 (47%), Positives = 100/155 (64%)

Query: 1197 LEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICP 1256
            ++KVL+S+NSE    +K+ +R T+ P+IGDKF+SRHGQKG IG+   QEDMPF   G+ P
Sbjct: 555  VDKVLLSTNSEGLKFVKVRMRTTKVPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGVVP 614

Query: 1257 DIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQG 1316
            D+I+NPH  PSRMT+  LIE    K   + G   + T F    +  V + L  HGY  +G
Sbjct: 615  DLIINPHAIPSRMTIAHLIECQLSKVSSLRGYEGDATPFTEITVDSVSKLLREHGYQSRG 674

Query: 1317 KDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKI 1351
             ++ Y+G TG  L   ++ GP YYQ+L+HMV DKI
Sbjct: 675  FEVMYNGHTGRKLVVQVFLGPTYYQRLRHMVDDKI 709



 Score =  110 bits (275), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 55/155 (35%), Positives = 93/155 (60%), Gaps = 5/155 (3%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++Q+TI++ L  ++ TGNW   ++    + GV+QVL+R ++ S L  + R N+
Sbjct: 37  EFNLTLGVKQNTISSGLKYSLATGNWGDQKKAAQAKAGVSQVLNRYTFASTLSHLRRTNT 96

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM  I+  +  + +   +  
Sbjct: 97  PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCFISVGSPAEPITDYLIQ 156

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGITCHH 338
            G+E +  +  E    P    VFVNG+  G+  HH
Sbjct: 157 RGMEVLEEY--EPTRMPNATKVFVNGVWVGV--HH 187



 Score = 90.1 bits (222), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 345 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 390

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 391 YDERMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 430


>gi|15920466|ref|NP_376135.1| DNA-directed RNA polymerase subunit B [Sulfolobus tokodaii str. 7]
 gi|15621249|dbj|BAB65244.1| DNA-directed RNA polymerase subunit B [Sulfolobus tokodaii str. 7]
          Length = 1126

 Score =  218 bits (555), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 110/262 (41%), Positives = 162/262 (61%), Gaps = 2/262 (0%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++PYP HNQ+PRNTYQ AM KQA+G    N Q R DT  + L Y Q+P+V +K + I  +
Sbjct: 652  IIPYPEHNQSPRNTYQSAMAKQALGLYAANYQLRTDTRAHLLHYPQKPLVGTKILDIIGY 711

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
            +  PAG NA +AVMSY+GY++EDA+IMNK+S++RG  R   +R       +YP    D+I
Sbjct: 712  NDRPAGNNAILAVMSYTGYNMEDAIIMNKSSVERGMYRSTFFRLYSTEELKYPGGQEDKI 771

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEY--K 1091
            + P       K    +R L+ +GIV+P  ++    VL+ K  P   +      +PE   +
Sbjct: 772  MKPEPGTKGYKGNEYYRLLEDNGIVSPEVEVKGGDVLIGKVSPPRFLQEFKELSPEQSKR 831

Query: 1092 EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVE 1151
            +  +  +      ++ VLV+ +SE   L+K+ +R  R PEIGDKF++RHGQKGVIG++++
Sbjct: 832  DTSIVTRHGEMGIVDLVLVTESSEGNKLVKVRVRDLRIPEIGDKFATRHGQKGVIGMLID 891

Query: 1152 QEDMPFNESGICPDIIMNPHGL 1173
            Q DMP+   G+ PDII+NPH L
Sbjct: 892  QADMPYTVKGVVPDIILNPHAL 913



 Score =  171 bits (434), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 85/174 (48%), Positives = 118/174 (67%), Gaps = 1/174 (0%)

Query: 1200 VLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDII 1259
            VLV+ +SE   L+K+ +R  R PEIGDKF++RHGQKGVIG++++Q DMP+   G+ PDII
Sbjct: 848  VLVTESSEGNKLVKVRVRDLRIPEIGDKFATRHGQKGVIGMLIDQADMPYTVKGVVPDII 907

Query: 1260 MNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAF-GGTKLVDVQEELIRHGYNYQGKD 1318
            +NPH  PSRMT+G+++E LAGK   + G   + T F     L ++++ +   G    G +
Sbjct: 908  LNPHALPSRMTIGQIMEALAGKYVALTGKPVDATPFIESPPLEEIRKGIRESGLLPDGTE 967

Query: 1319 IFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
            + Y G TG+ L+  I  G VYYQKL HMV DK+HAR+RGP  +LTRQPT  R +
Sbjct: 968  VVYDGRTGQKLKGRILFGIVYYQKLHHMVADKMHARARGPVQILTRQPTEGRAR 1021



 Score =  106 bits (264), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 56/135 (41%), Positives = 77/135 (57%), Gaps = 15/135 (11%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKR 751
           FDD + +GKIE+LD  E  +++IA++   +     THLEI P  +LG+ A I        
Sbjct: 602 FDDLVKQGKIEFLDAEEEENAYIALNPQDLTKD-HTHLEIWPPAILGITASI-------- 652

Query: 752 FHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTI 811
                 +PYP HNQ+PRNTYQ AM KQA+G    N Q R DT  + L Y Q+P+V +K +
Sbjct: 653 ------IPYPEHNQSPRNTYQSAMAKQALGLYAANYQLRTDTRAHLLHYPQKPLVGTKIL 706

Query: 812 RITNFHKLPAGKCQI 826
            I  ++  PAG   I
Sbjct: 707 DIIGYNDRPAGNNAI 721



 Score = 92.8 bits (229), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 90/172 (52%), Gaps = 15/172 (8%)

Query: 180 KIKAAQFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMT 239
           K++  +  +   +R D IT  +  A+ TGNW        R GV+Q+L R +++S L  + 
Sbjct: 372 KVRGRRLSLTALVRADIITERVRHALATGNWV-----GGRTGVSQLLDRTNWLSMLSHLR 426

Query: 240 RINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLK 299
           R+ S   + +     R L G+QWG +CP +TPEG   GLVKNLAL+  ++   +E ++ K
Sbjct: 427 RVVSSLARGQPNFEARDLHGTQWGRMCPFETPEGPNSGLVKNLALLAQVSVGINESSIEK 486

Query: 300 IMYNIGI----EHIAMFNGEELSSPGVYL----VFVNGILAGITCHHKEVCK 343
           ++Y  G+    E I   + EE      YL    V++NG L G     KE+ +
Sbjct: 487 VIYEQGVISQEELIDRLSAEE--DINKYLNWSKVYLNGRLLGYYPDGKELAE 536



 Score = 46.6 bits (109), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 50/234 (21%), Positives = 88/234 (37%), Gaps = 25/234 (10%)

Query: 314 GEELSSPGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHECRLRDLTYSAPIT 373
           GE+   PG Y + VNG    +    +++    +   +  +     H  ++        + 
Sbjct: 141 GEDPKDPGGYFI-VNGT-EKVIVAQEDLATNRVLVDYGKSGSNITHVAKITSAAAGYRVQ 198

Query: 374 VDIEYTRGSQRVVRSDLVIGRMP--IMLQSSKCVLRNKTEYTSS-------------SRR 418
           V IE  + S   V    V G++P  IM+++          Y  S              + 
Sbjct: 199 VVIERLKDSSIQVSFATVPGKIPFVIMMRALGFTTDKDIVYAVSLDPEIQNELLPSLEQA 258

Query: 419 ASTSSVTMHSQRTSPLLSCKKLRQKRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMK 478
           +S ++V          ++  + R+ R Q         A   +    + HI       K K
Sbjct: 259 SSITTVEDALDFIGNRIAIGQKRENRIQR--------AEQIIDKYFLPHIGTSPEDRKKK 310

Query: 479 AMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSEL 532
             YLA  + +++         DD+D+Y NKR+ LAG L + +F   FK F  +L
Sbjct: 311 GYYLAAAVNKLLELYLGRRQPDDKDHYANKRVRLAGDLFTSLFRVAFKAFVKDL 364



 Score = 42.0 bits (97), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 14/47 (29%), Positives = 33/47 (70%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDV 158
           + ++W++V SF K +GLV+ H+DSF+ F+  ++++++     I +++
Sbjct: 5   VNERWEIVKSFFKLRGLVRQHLDSFNDFLRNKLQQIIDEQGEIITEI 51


>gi|296243132|ref|YP_003650619.1| DNA-directed RNA polymerase subunit B' [Thermosphaera aggregans DSM
            11486]
 gi|296095716|gb|ADG91667.1| DNA-directed RNA polymerase, subunit B' ;DNA-directed RNA polymerase,
            subunit B' [Thermosphaera aggregans DSM 11486]
          Length = 1163

 Score =  218 bits (555), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 107/263 (40%), Positives = 164/263 (62%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++PYP HNQ+PRN YQ AM KQ++G    N Q R+DT  + L Y Q+P+V+++++ +  +
Sbjct: 694  IIPYPEHNQSPRNMYQAAMAKQSLGLYSANFQKRMDTRGHFLHYPQKPLVQTRSMEVIGY 753

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
            ++ PAGQN  +AV++++GY+IEDALIMNK+S DRG  R   +R    V  +Y     D I
Sbjct: 754  NERPAGQNMVVAVLTFTGYNIEDALIMNKSSADRGLARSTFFRLYSTVEYKYMGGQQDEI 813

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSA---ISMATPEY 1090
            + P       + +  +  L++DGIVAP  Q+    VLV K  P   + A   +  A    
Sbjct: 814  VIPPTNIRGYRGLRAYEKLEEDGIVAPETQVAGGDVLVGKISPPRFLGAQEYMLGAGLTK 873

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++  V  +      ++ VL+++++E   L+K+ +R  R PE+GDKF+SRHGQKGV+GL+V
Sbjct: 874  QDTSVVMRHEEKGIVDTVLITTDNEGNKLVKVRVRDLRIPELGDKFASRHGQKGVLGLLV 933

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             Q DMPF E G+ PD+++NPH  
Sbjct: 934  PQYDMPFTEDGVVPDLVINPHAF 956



 Score =  195 bits (496), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 92/182 (50%), Positives = 128/182 (70%), Gaps = 7/182 (3%)

Query: 1197 LEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICP 1256
            ++ VL+++++E   L+K+ +R  R PE+GDKF+SRHGQKGV+GL+V Q DMPF E G+ P
Sbjct: 888  VDTVLITTDNEGNKLVKVRVRDLRIPELGDKFASRHGQKGVLGLLVPQYDMPFTEDGVVP 947

Query: 1257 DIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQG 1316
            D+++NPH +PSRMTVG+LIE +AGK   +EG   + T F  T + D++  L RH Y   G
Sbjct: 948  DLVINPHAFPSRMTVGQLIESIAGKVAALEGRVVDATPFHKTPVKDLEIVLKRHRYLPSG 1007

Query: 1317 KDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPT-------GR 1369
            +++ Y G TGE + + ++ G VYYQKL HMV DK+HAR+RGP  +LTRQPT       G 
Sbjct: 1008 EEVMYDGRTGEMISSPVFIGIVYYQKLHHMVSDKVHARARGPVQILTRQPTEGRSRAGGL 1067

Query: 1370 RW 1371
            RW
Sbjct: 1068 RW 1069



 Score = 98.6 bits (244), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 80/135 (59%), Gaps = 15/135 (11%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKR 751
           F+D +++G IEYLD +E  +++IA+S   I     TH EI    +LG+ A I        
Sbjct: 644 FEDLVHKGIIEYLDPDEEENAYIALSIDNIT-SEHTHAEIWIPAILGITASI-------- 694

Query: 752 FHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTI 811
                 +PYP HNQ+PRN YQ AM KQ++G    N Q R+DT  + L Y Q+P+V+++++
Sbjct: 695 ------IPYPEHNQSPRNMYQAAMAKQSLGLYSANFQKRMDTRGHFLHYPQKPLVQTRSM 748

Query: 812 RITNFHKLPAGKCQI 826
            +  +++ PAG+  +
Sbjct: 749 EVIGYNERPAGQNMV 763



 Score = 79.3 bits (194), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 66/122 (54%), Gaps = 5/122 (4%)

Query: 182 KAAQFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRI 241
           K  + D+   ++   IT+ +  A+ TGNW        + GV+Q+L R + +S L  + R+
Sbjct: 398 KNRKLDLKMVVKPSVITDRILHAMATGNWP-----GGKTGVSQLLDRTNMLSTLSHLRRV 452

Query: 242 NSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIM 301
            S   + +     R L G+QWG +CP +TPEG   GLVKNLALM +++    E  +  I+
Sbjct: 453 VSPLSRGQPHFEARELHGTQWGRMCPFETPEGANIGLVKNLALMVNVSVGVPESEIEPIL 512

Query: 302 YN 303
           Y 
Sbjct: 513 YK 514



 Score = 50.1 bits (118), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 33/48 (68%)

Query: 355 QTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSS 402
           + TP ECRLR+LTY+AP+ V I+Y   S R    +L +  +P+ML+SS
Sbjct: 78  RKTPMECRLRNLTYAAPVMVKIKYVDESGRSKEQELKLMDLPVMLKSS 125



 Score = 49.7 bits (117), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 10/82 (12%)

Query: 460 LSSTCIAHI---PVINMRFKMKAMYLAVMIRRMV---LALSDPDMLDDRDYYGNKRLELA 513
           L    + HI   P    R K KA+++  MI R++   L   +PD   D+D+Y NKRL+LA
Sbjct: 314 LDENLLPHIGTDPSPETRIK-KAVFIGQMISRIIELHLGFREPD---DKDHYRNKRLKLA 369

Query: 514 GSLLSLMFEDVFKRFNSELKET 535
           G LLS++       F  +LKE+
Sbjct: 370 GDLLSVLLRTALLAFTRDLKES 391


>gi|119644321|gb|ABL85618.1| RNA polymerase II second largest subunit [Xanthoria polycarpa]
          Length = 718

 Score =  218 bits (555), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 115/287 (40%), Positives = 168/287 (58%), Gaps = 5/287 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 370  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDERMDTMANILYYPQKPLATTRSMEFLKF 429

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR      K+      +  
Sbjct: 430  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYVDTEKRVGMTVLENF 489

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMA--TPEY- 1090
              PL     +     +  LD DG+VAPG ++    V++ K+ P I+  A  M   T  + 
Sbjct: 490  EKPLRTETLKLKHGTYDKLDDDGLVAPGVRVSGEDVIIGKTTP-IAPDAQEMGQRTKSHI 548

Query: 1091 -KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             K+     + +    ++KVL+S+NSE    +K+ +R T+ P+IGDKF+SRHGQKG IG+ 
Sbjct: 549  KKDASTPLRSTENGIVDKVLLSTNSEGLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGIT 608

Query: 1150 VEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSY 1196
              QEDMPF   G+ PD+I+NPH +     I    E  +S   S+  Y
Sbjct: 609  YRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGY 655



 Score =  156 bits (394), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 74/169 (43%), Positives = 104/169 (61%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            K+     + +    ++KVL+S+NSE    +K+ +R T+ P+IGDKF+SRHGQKG IG+  
Sbjct: 550  KDASTPLRSTENGIVDKVLLSTNSEGLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITY 609

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   G+ PD+I+NPH  PSRMT+  LIE    K   + G   + T F    +  
Sbjct: 610  RQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGYEGDATPFTEITVDS 669

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKI 1351
            V + L  H Y  +G ++ Y+G TG  L A ++ GP YYQ+L+HMV DKI
Sbjct: 670  VSKLLREHSYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKI 718



 Score =  113 bits (283), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 56/155 (36%), Positives = 94/155 (60%), Gaps = 5/155 (3%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++Q+T+++ L  ++ TGNW   ++    + GV+QVL+R ++ S L  + R N+
Sbjct: 46  EFNLALGVKQNTLSSGLKYSLATGNWGDQKKAASAKAGVSQVLNRYTFASTLSHLRRTNT 105

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT       ++  + N
Sbjct: 106 PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPADPIVDYLTN 165

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGITCHH 338
            G+E +  +  E   +P    VFVNG   G  CH+
Sbjct: 166 RGMESLEEY--EPTRAPHATKVFVNGTWIG--CHN 196



 Score = 90.1 bits (222), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 354 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 399

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 400 YDERMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 439


>gi|357216669|gb|AET71068.1| RNA polymerase II second largest subunit, partial [Trametopsis
            cervina]
          Length = 676

 Score =  218 bits (555), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 162/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DT+   L Y Q+P+  ++++    F
Sbjct: 363  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNYQVRMDTMANILYYPQKPLATTRSMEYLKF 422

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 423  RELPAGQNAVVAILCYSGYNQEDSVIMNQSSIDRGLFRSMYYRSYMDLEKKSGVQQLEEF 482

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 483  EKPTRDTTLRMKHGTYDKLEDDGLIAPGTGVNGEDIIIGKTAPIPPDSEELGQRTRTHTR 542

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++N+E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 543  RDVSTPLKSTESGIIDQVLITTNAEGQKFVKIRVRSTRVPQIGDKFASRHGQKGTIGITY 602

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PD+I+NPH +
Sbjct: 603  RQEDMPFTAEGITPDLIINPHAI 625



 Score =  124 bits (310), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 59/139 (42%), Positives = 84/139 (60%)

Query: 1178 RITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV 1237
            R    ++V    K +    +++VL+++N+E    +K+ +R TR P+IGDKF+SRHGQKG 
Sbjct: 538  RTHTRRDVSTPLKSTESGIIDQVLITTNAEGQKFVKIRVRSTRVPQIGDKFASRHGQKGT 597

Query: 1238 IGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGG 1297
            IG+   QEDMPF   GI PD+I+NPH  PSRMT+G L+E L  K   + GN  + T F  
Sbjct: 598  IGITYRQEDMPFTAEGITPDLIINPHAIPSRMTIGHLVECLLSKVATLVGNEGDATPFTD 657

Query: 1298 TKLVDVQEELIRHGYNYQG 1316
              +  V   L   GY+ +G
Sbjct: 658  LTVESVSAILRGEGYHSRG 676



 Score =  109 bits (273), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 93/151 (61%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++ +TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 40  EFNLSLAVKHNTITNGLKYSLATGNWGDQKKSMSAKAGVSQVLNRYTYASTLSHLRRCNT 99

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNL+LM  I+  +    +++ +  
Sbjct: 100 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMACISVGSISAPVIEFLEE 159

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E  ++      ++P    VFVNG+  G+
Sbjct: 160 WGLE--SLEENAHSATPCTK-VFVNGVWIGV 187



 Score = 92.8 bits (229), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/164 (35%), Positives = 80/164 (48%), Gaps = 43/164 (26%)

Query: 692 FDDFLYEGKIEYLDVNEG------------NDSHIAVS------ESG-IRPGVT------ 726
           F+D + +G IE LD  E             ND+ +  S      +SG   PG        
Sbjct: 283 FNDLIRDGVIEMLDAEEEETVMICMSPEDLNDARLQASGLEPRSKSGEFDPGARIKAPTS 342

Query: 727 ----THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGC 782
               TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG 
Sbjct: 343 VHAFTHCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGI 388

Query: 783 IGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              N Q R+DT+   L Y Q+P+  ++++    F +LPAG+  +
Sbjct: 389 YLTNYQVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAV 432


>gi|46411504|gb|AAS94322.1| RNA polymerase II [Astrothelium cinnamomeum]
          Length = 722

 Score =  218 bits (555), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 109/283 (38%), Positives = 172/283 (60%), Gaps = 3/283 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG +  N  +R+DT++  L Y Q+P+  + +++  NF
Sbjct: 374  IIPFPDHNQSPRNTYQSAMGKQAMGVMLTNFASRMDTMVNVLYYPQKPLATTHSMKYLNF 433

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR+     K+  +   +  
Sbjct: 434  QELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGSTVLEEF 493

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAISMATPEY-- 1090
              P+     R     +  LD DGI++PG ++    +++ K+ P    V  +   T  +  
Sbjct: 494  EKPMRSDTLRLKRGTYDKLDNDGIISPGVRVSGEDIIIGKTAPIAPDVEELGQRTKLHTK 553

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    + +    +++V++++N+E    +K+  R T+ P+IGDKF+SRHGQKG IG+  
Sbjct: 554  RDVSTPLRSTENGIVDQVVLTTNTEGLKFVKVRTRTTKVPQIGDKFASRHGQKGTIGITY 613

Query: 1151 EQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSV 1193
             QEDMPF   GI PD+I+NPH +     I    E  +S  GS+
Sbjct: 614  RQEDMPFTSQGITPDLIINPHAIPSRMTIAHLVECLLSKLGSL 656



 Score =  162 bits (411), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 82/211 (38%), Positives = 126/211 (59%), Gaps = 7/211 (3%)

Query: 1144 GVI--GLIVEQEDMPFNESG-ICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKV 1200
            G+I  G+ V  ED+   ++  I PD+      L    ++   ++V    + +    +++V
Sbjct: 516  GIISPGVRVSGEDIIIGKTAPIAPDV----EELGQRTKLHTKRDVSTPLRSTENGIVDQV 571

Query: 1201 LVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIM 1260
            ++++N+E    +K+  R T+ P+IGDKF+SRHGQKG IG+   QEDMPF   GI PD+I+
Sbjct: 572  VLTTNTEGLKFVKVRTRTTKVPQIGDKFASRHGQKGTIGITYRQEDMPFTSQGITPDLII 631

Query: 1261 NPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIF 1320
            NPH  PSRMT+  L+E L  K G + GN  + T F    + D+   L  +G+  +G ++ 
Sbjct: 632  NPHAIPSRMTIAHLVECLLSKLGSLTGNEGDATPFSPITVSDISNFLRENGFQSRGFEVM 691

Query: 1321 YSGITGEALEAYIYSGPVYYQKLKHMVQDKI 1351
            Y+G TG  L A ++ GP YYQ+L+HMV DKI
Sbjct: 692  YNGHTGRKLRAQVFFGPTYYQRLRHMVDDKI 722



 Score =  110 bits (275), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 53/152 (34%), Positives = 92/152 (60%), Gaps = 3/152 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F I   ++   ITN L  ++ TGNW  +R  M  + GV+QVL+R ++ S L  + R N+
Sbjct: 46  EFSITLAVKSAHITNGLRYSLSTGNWGEQRKAMSSKAGVSQVLNRYTFASTLSHLRRTNT 105

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM +++     + +++ M  
Sbjct: 106 PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYVSVGTPSEPIVEFMNR 165

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGIT 335
             +E +  +  + ++ P    +FVNG+  G++
Sbjct: 166 NNMEILEEY--DPVAFPNATKIFVNGVWVGVS 195



 Score = 94.4 bits (233), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 48/122 (39%), Positives = 71/122 (58%), Gaps = 16/122 (13%)

Query: 707 NEGNDSHIAVSESGIRPGVT--THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHN 764
           ++G    +A  ++   P V   TH EI P  +LG+CA I              +P+P HN
Sbjct: 336 DDGQKDPLARVQAKPNPNVKNYTHCEIHPAMILGICASI--------------IPFPDHN 381

Query: 765 QAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKC 824
           Q+PRNTYQ AMGKQAMG +  N  +R+DT++  L Y Q+P+  + +++  NF +LPAG+ 
Sbjct: 382 QSPRNTYQSAMGKQAMGVMLTNFASRMDTMVNVLYYPQKPLATTHSMKYLNFQELPAGQN 441

Query: 825 QI 826
            I
Sbjct: 442 AI 443



 Score = 42.0 bits (97), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 25/33 (75%)

Query: 500 DDRDYYGNKRLELAGSLLSLMFEDVFKRFNSEL 532
           DDRD++G KRL+LAG LL+ +F  +F+R   ++
Sbjct: 1   DDRDHFGKKRLDLAGPLLASLFRTLFQRLTKDV 33


>gi|40644726|emb|CAD92665.1| RNA polymerase II [Mimulus guttatus]
          Length = 629

 Score =  218 bits (555), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 112/271 (41%), Positives = 167/271 (61%), Gaps = 20/271 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 202  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 261

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L +R+ +   K+         
Sbjct: 262  RQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRAEXKK--------- 312

Query: 1034 LGPLLEADTRKPV------YRHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            +G L++ D  +P        RH +   LD DG+  PG ++    V++ K+ P     A  
Sbjct: 313  MGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPITPDEAQG 372

Query: 1085 MATPEY--KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQ 1142
             A   Y  ++   S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQ
Sbjct: 373  QANARYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 432

Query: 1143 KGVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            KG +G+   QEDMP+   GI PDII+NPH +
Sbjct: 433  KGTVGMTYTQEDMPWTLEGINPDIIVNPHAI 463



 Score =  178 bits (452), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 85/184 (46%), Positives = 119/184 (64%)

Query: 1187 VSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQED 1246
             S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   QED
Sbjct: 385  TSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 444

Query: 1247 MPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEE 1306
            MP+   GI PDII+NPH  PSRMT+G+LIE + GK     G   + T F    + ++ + 
Sbjct: 445  MPWTLEGINPDIIVNPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVTVDNISKA 504

Query: 1307 LIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQP 1366
            L + GY  +G +  Y+G TG  L + I+ GP YYQ+LKHMV DKIH+R RGP  +LTRQP
Sbjct: 505  LHKCGYQMRGYETMYNGHTGRKLTSMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP 564

Query: 1367 TGRR 1370
               R
Sbjct: 565  AEGR 568



 Score =  102 bits (253), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/141 (40%), Positives = 79/141 (56%), Gaps = 24/141 (17%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVS-----ESGIRPG-----VTTHLEIAPFTLLGVCA 741
           + D + +G IEY+D  E   + I+++      + + PG       TH EI P  +LGVCA
Sbjct: 141 WHDLVAKGFIEYIDTEEEETTMISMTINDLVSARLNPGEAYSDTYTHCEIHPSLILGVCA 200

Query: 742 GIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYA 801
            I              +P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y 
Sbjct: 201 SI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYP 246

Query: 802 QRPMVESKTIRITNFHKLPAG 822
           Q+P+V ++ +   +F +LPAG
Sbjct: 247 QKPLVTTRAMEHLHFRQLPAG 267



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 40/69 (57%), Gaps = 8/69 (11%)

Query: 269 DTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMFNGEELSS---PGVYLV 325
           +TPEG+ACGLVKNLALM +IT  +    +L+ +   G E     N EE+S    P    +
Sbjct: 1   ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTE-----NFEEISPAVIPQATKI 55

Query: 326 FVNGILAGI 334
           FVNG   GI
Sbjct: 56  FVNGCWVGI 64


>gi|302781178|ref|XP_002972363.1| hypothetical protein SELMODRAFT_172903 [Selaginella moellendorffii]
 gi|300159830|gb|EFJ26449.1| hypothetical protein SELMODRAFT_172903 [Selaginella moellendorffii]
          Length = 1178

 Score =  218 bits (555), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 110/261 (42%), Positives = 159/261 (60%), Gaps = 1/261 (0%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 705  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHF 764

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R + YR+ +   K+      +  
Sbjct: 765  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSIFYRSYRDEEKKAGTLVKEEF 824

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYK-E 1092
              P  E  T      +  LD DGI  PG ++    V++ K+ P       + A    K +
Sbjct: 825  ERPNRETTTGMRHGSYDKLDDDGIAPPGTRVSGEDVIIGKTTPLAQDETGTQAQRYSKRD 884

Query: 1093 VPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQ 1152
                 + S    +++VL+++N++    +K  +R  R P+IGDKFSSRHGQKG IG+   Q
Sbjct: 885  QSTCLRHSESGMIDQVLLTTNADGLRFVKTRVRSIRIPQIGDKFSSRHGQKGTIGMTYTQ 944

Query: 1153 EDMPFNESGICPDIIMNPHGL 1173
            EDMPF + GI PDII+NPH +
Sbjct: 945  EDMPFTQEGITPDIIVNPHAI 965



 Score =  182 bits (463), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 85/174 (48%), Positives = 116/174 (66%)

Query: 1197 LEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICP 1256
            +++VL+++N++    +K  +R  R P+IGDKFSSRHGQKG IG+   QEDMPF + GI P
Sbjct: 897  IDQVLLTTNADGLRFVKTRVRSIRIPQIGDKFSSRHGQKGTIGMTYTQEDMPFTQEGITP 956

Query: 1257 DIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQG 1316
            DII+NPH  PSRMT+G+LIE + GK   + G   + T F    + ++ + L +  Y  +G
Sbjct: 957  DIIVNPHAIPSRMTIGQLIECIMGKVAALMGKEGDATPFTDVTVDNISKALHKCNYQLRG 1016

Query: 1317 KDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRR 1370
             +  Y+G TG  L A I+ GP YYQ+LKHMV DKIH+R RGP  +LTRQP   R
Sbjct: 1017 FETMYNGHTGRRLSAMIFIGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGR 1070



 Score =  112 bits (281), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/160 (40%), Positives = 93/160 (58%), Gaps = 12/160 (7%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQ 244
           + ++   ++  TIT+ L  ++ TGNW        R GV+QVL+RL+Y S L  + R+NS 
Sbjct: 420 EVNLAYAVKAKTITSGLKYSLATGNWGQANSGNARAGVSQVLNRLTYASTLSHLRRLNSP 479

Query: 245 FEKT-RKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
             +  R ++ PR L  S WGM+CP++TPEG+ACGLVKNLALM +IT  +    +L     
Sbjct: 480 IGREGRLLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMAYITVGSAANPIL----- 534

Query: 304 IGIEHIAMFNGEELSS---PGVYLVFVNGILAGITCHHKE 340
           + +E  +  N EE+S    P    +FVNG   GI   H+E
Sbjct: 535 VFLEEWSTENFEEISPAVIPNATKIFVNGAWVGI---HRE 571



 Score = 98.2 bits (243), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/171 (35%), Positives = 84/171 (49%), Gaps = 39/171 (22%)

Query: 677 RPTFLNMHQFLGFKRFD---------------DFLYEGKIEYLDVNEGNDSHIAVSESGI 721
           RP F+   Q L  K+ D               + + +G IEY+D  E   + I+++ S +
Sbjct: 614 RPLFIVEKQRLLIKKSDIRALQQKEAGENGWHELVSKGFIEYVDTEEEETTMISMTISDL 673

Query: 722 ----------RPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTY 771
                          TH EI P  +LGVC  I              +P+P HNQ+PRNTY
Sbjct: 674 VNARLNPEEAYSDTYTHCEIHPSMILGVCGSI--------------IPFPDHNQSPRNTY 719

Query: 772 QCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAG 822
           Q AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F +LPAG
Sbjct: 720 QSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG 770



 Score = 60.1 bits (144), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 14/114 (12%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A+D L    + H+ V       KA +   +I R++L        DDRD+YGNKRL+LAG 
Sbjct: 331 AKDILQKEMLPHVGVGEYCETKKAYFFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGP 390

Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYGN 555
           LL  +F  +F++   ++           KE NL+  V    + SG  + L  GN
Sbjct: 391 LLGSLFRQLFRKLTKDVRAYLQKCVDNGKEVNLAYAVKAKTITSGLKYSLATGN 444



 Score = 45.8 bits (107), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 45/80 (56%), Gaps = 9/80 (11%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVD-IEY-TR----GSQRVVRSDL---V 391
           + KP + ES   T    P   RLR+LTYSAP+  D I+Y TR    G +   + +L    
Sbjct: 82  LSKPMMTESDGETATLFPKAARLRNLTYSAPLYADIIKYVTRKGEDGEEDTEQEELPKVF 141

Query: 392 IGRMPIMLQSSKCVLRNKTE 411
           IG++PIML+SS C L   ++
Sbjct: 142 IGKVPIMLRSSYCTLYQNSD 161


>gi|55583696|gb|AAV53367.1| RNA polymerase II second largest subunit [Phyllotopsis sp. MB35]
          Length = 889

 Score =  218 bits (555), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 107/263 (40%), Positives = 162/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 521  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKF 580

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 581  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEF 640

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P+ +   R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 641  EKPMRDNTLRMKHGTYDKLEDDGLIAPGTGVAGEDIIIGKTAPIPPDSEELGQRTRTHTR 700

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 701  RDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRSTRVPQIGDKFASRHGQKGTIGITY 760

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 761  RQEDMPFTAEGIVPDIIINPHAI 783



 Score =  191 bits (484), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 90/188 (47%), Positives = 122/188 (64%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 701  RDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRSTRVPQIGDKFASRHGQKGTIGITY 760

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 761  RQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVES 820

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
            V   L + GY  +G ++ + G TG  L+A +Y GP YYQ+LKHMV DKIH+R+RGP  +L
Sbjct: 821  VSTFLRQKGYQSRGLEVMFHGHTGRKLQAQVYLGPTYYQRLKHMVDDKIHSRARGPVQIL 880

Query: 1363 TRQPTGRR 1370
            TRQP   R
Sbjct: 881  TRQPVEGR 888



 Score =  112 bits (279), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 91/151 (60%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 215 EFNLALAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT 274

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM+ I+  +    +++ +  
Sbjct: 275 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSYSAPVIEFLEE 334

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E +        SS     VFVNG+  G+
Sbjct: 335 WGLESL---EENAHSSTPCTKVFVNGVWMGV 362



 Score = 91.7 bits (226), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 59/177 (33%), Positives = 90/177 (50%), Gaps = 22/177 (12%)

Query: 706 VNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQ 765
            N+G+    A  ++GI     TH EI P  +LG+CA I              +P+P HNQ
Sbjct: 484 ANDGDFDPAARLKAGINAHTWTHCEIHPSMILGICASI--------------IPFPDHNQ 529

Query: 766 APRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQ 825
           +PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  
Sbjct: 530 SPRNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNA 589

Query: 826 ISPGGAEELTARESCHEVLKIISFSISVAVFDSVWLG-----DVKQGVHQLSEEKEP 877
           I    A    +  +  + + +   SI   +F S++       + K G+ QL E ++P
Sbjct: 590 IV---AILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEFEKP 643



 Score = 58.5 bits (140), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 14/114 (12%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A++ L    + H+ +       KA +   MI R++LA  +   LDDRD++G KRL+LAG 
Sbjct: 126 AQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAALERRELDDRDHFGKKRLDLAGP 185

Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYGN 555
           LL+ +F  +F++   ++           KE NL+  V    + +G  + L  GN
Sbjct: 186 LLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLALAVKHQTITNGLKYSLATGN 239


>gi|111283850|gb|ABH09217.1| RNA polymerase II second largest subunit, partial [Rhodotorula
            mucilaginosa]
          Length = 356

 Score =  218 bits (555), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 108/263 (41%), Positives = 163/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DT+   L Y Q+P+  ++++   +F
Sbjct: 17   IIPFPDHNQSPRNTYQSAMGKQAMGVYLTNYQVRMDTMANILYYPQKPLATTRSMEYLHF 76

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R L YR+     K+      +  
Sbjct: 77   RELPAGQNAVVAILCYSGYNQEDSVIMNQSSIDRGLFRSLYYRSYMDQEKKSGTIQLEEF 136

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  LD DG+V  GE++    +++ K+ P  + S      + T   
Sbjct: 137  EKPTRDTTLRLKHGTYEKLDGDGLVGLGERVSGEDIIIGKTAPIPTDSEEMGQRLKTHTK 196

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ +R TR PEIGDKF+SRHGQKG IG+  
Sbjct: 197  RDVSTPLKSTENGLVDQVLLTTNSEGLKFVKIRVRSTRIPEIGDKFASRHGQKGTIGITY 256

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
              EDMPF+  GI PD+I+NPH +
Sbjct: 257  RHEDMPFSAEGITPDLIINPHAI 279



 Score =  151 bits (381), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 70/160 (43%), Positives = 104/160 (65%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++NSE    +K+ +R TR PEIGDKF+SRHGQKG IG+  
Sbjct: 197  RDVSTPLKSTENGLVDQVLLTTNSEGLKFVKIRVRSTRIPEIGDKFASRHGQKGTIGITY 256

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
              EDMPF+  GI PD+I+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 257  RHEDMPFSAEGITPDLIINPHAIPSRMTIGHLVECLLSKLSTITGNEGDATPFSEVTVEA 316

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQK 1342
            + + L ++GY+ +G ++ Y+G TG  L+A +Y GP YYQ+
Sbjct: 317  ISDLLRQYGYHSRGLEVMYNGHTGRKLQAQVYLGPTYYQR 356



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 60/100 (60%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 1   THCEIHPAMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVYLTN 46

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
            Q R+DT+   L Y Q+P+  ++++   +F +LPAG+  +
Sbjct: 47  YQVRMDTMANILYYPQKPLATTRSMEYLHFRELPAGQNAV 86


>gi|67942344|gb|AAY83372.1| DNA-dependent RNA polymerase II [Sarcoscypha occidentalis]
          Length = 542

 Score =  218 bits (555), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 110/264 (41%), Positives = 162/264 (61%), Gaps = 5/264 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 214  IIPFPDHNQSPRNTYQSAMGKQAMGVYLTNFAERMDTMANILYYPQKPLATTRSMEYLKF 273

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA + +M YSGY+ ED++IMN++S+DRG  R L YR      K+   Q  +  
Sbjct: 274  RELPAGQNAIVGIMCYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYMDQEKRIGMQVVEEF 333

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPE---- 1089
              P+     R     +  LD DG+VAPG ++    +++ K+ P IS  A  M   +    
Sbjct: 334  EKPMRGNTLRLKHGTYDKLDDDGLVAPGVRVTGEDIIIGKTAP-ISPDADEMGQRQKYHT 392

Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             ++V    + +    +++V++S+NSE    +K+ +R T+ P+IGDKF+SRHGQKG IG+ 
Sbjct: 393  KRDVSTPLRSTESGIVDQVMLSTNSEGLKFVKVRMRTTKVPQIGDKFASRHGQKGTIGIT 452

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
              QEDMPF   GI PDII+NPH +
Sbjct: 453  YRQEDMPFTCEGIVPDIIINPHAI 476



 Score =  132 bits (333), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 65/149 (43%), Positives = 92/149 (61%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    + +    +++V++S+NSE    +K+ +R T+ P+IGDKF+SRHGQKG IG+  
Sbjct: 394  RDVSTPLRSTESGIVDQVMLSTNSEGLKFVKVRMRTTKVPQIGDKFASRHGQKGTIGITY 453

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDII+NPH  PSRMT+  LIE L  K   + G   + T F    +  
Sbjct: 454  RQEDMPFTCEGIVPDIIINPHAIPSRMTIAHLIECLLSKLSTLRGAEGDATPFTDVTVRS 513

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEA 1331
            V E L  HGY  +G ++ Y+G TG+ L A
Sbjct: 514  VSEMLRDHGYQSRGFEVMYNGHTGKKLMA 542



 Score = 88.2 bits (217), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 198 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVYLTN 243

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 244 FAERMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAI 283


>gi|291419548|gb|ADE05287.1| RNA polymerase II second largest subunit [Trypethelium nitidiusculum]
          Length = 329

 Score =  218 bits (555), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 109/283 (38%), Positives = 172/283 (60%), Gaps = 3/283 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG +  N  +R+DT++  L Y Q+P+  + +++  NF
Sbjct: 22   IIPFPDHNQSPRNTYQSAMGKQAMGVMLTNFSSRMDTMVNVLYYPQKPLATTHSMKYLNF 81

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR+     K+  +   +  
Sbjct: 82   QELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGSTVLEEF 141

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAISMATPEY-- 1090
              P+     R     +  LD DGI++PG ++    +++ K+ P    V  +   T  +  
Sbjct: 142  EKPMRSDTLRLKRGTYDKLDNDGIISPGVRVSGEDIIIGKTAPIAPDVEELGQRTKLHTK 201

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    + +    +++V++++N+E    +K+  R T+ P+IGDKF+SRHGQKG IG+  
Sbjct: 202  RDVSTPLRSTENGIVDQVVLTTNTEGLKFVKVRTRTTKVPQIGDKFASRHGQKGTIGITY 261

Query: 1151 EQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSV 1193
             QEDMPF   GI PD+I+NPH +     I    E  +S  GS+
Sbjct: 262  RQEDMPFTSQGITPDLIINPHAIPSRMTIAHLVECLLSKLGSL 304



 Score =  118 bits (295), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 65/190 (34%), Positives = 103/190 (54%), Gaps = 13/190 (6%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESG-ICPDIIMNPHGL 1173
            +L +  +P   D    + G        G+I  G+ V  ED+   ++  I PD+      L
Sbjct: 137  VLEEFEKPMRSDTLRLKRGTYDKLDNDGIISPGVRVSGEDIIIGKTAPIAPDV----EEL 192

Query: 1174 KGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
                ++   ++V    + +    +++V++++N+E    +K+  R T+ P+IGDKF+SRHG
Sbjct: 193  GQRTKLHTKRDVSTPLRSTENGIVDQVVLTTNTEGLKFVKVRTRTTKVPQIGDKFASRHG 252

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGT 1293
            QKG IG+   QEDMPF   GI PD+I+NPH  PSRMT+  L+E L  K G + GN  + T
Sbjct: 253  QKGTIGITYRQEDMPFTSQGITPDLIINPHAIPSRMTIAHLVECLLSKLGSLTGNEGDAT 312

Query: 1294 AFGGTKLVDV 1303
             F    + D+
Sbjct: 313  PFSPITVSDI 322



 Score = 93.2 bits (230), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 44/100 (44%), Positives = 62/100 (62%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG +  N
Sbjct: 6   THCEIHPAMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVMLTN 51

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
             +R+DT++  L Y Q+P+  + +++  NF +LPAG+  I
Sbjct: 52  FSSRMDTMVNVLYYPQKPLATTHSMKYLNFQELPAGQNAI 91


>gi|300394680|gb|ADK11878.1| DNA-directed RNA polymerase II subunit two, partial [Amylocorticium
            subsulphureum]
          Length = 344

 Score =  218 bits (555), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 107/265 (40%), Positives = 163/265 (61%), Gaps = 3/265 (1%)

Query: 912  PGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRIT 971
            P ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++   
Sbjct: 6    PSIIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMLYL 65

Query: 972  NFHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHD 1031
             F +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +
Sbjct: 66   RFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLE 125

Query: 1032 RILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATP 1088
            +   P  +   R     +  L+ DG++APG  +    +++ K+ P    S        T 
Sbjct: 126  QFEKPTRDNTLRMKHGTYEKLEDDGLIAPGTGVAGEDIIIGKTAPIPPDSEELGQRTRTH 185

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
              ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+
Sbjct: 186  SRRDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTRVPQIGDKFASRHGQKGTIGI 245

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
               QEDMPF   GI PD+I+NPH +
Sbjct: 246  TYRQEDMPFTAEGIVPDLIINPHAI 270



 Score =  147 bits (370), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 82/224 (36%), Positives = 121/224 (54%), Gaps = 11/224 (4%)

Query: 1124 LRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESGICPDIIMNPHGLKG 1175
            L Q  +P   +    +HG        G+I  G  V  ED+   ++   P    +   L  
Sbjct: 124  LEQFEKPTRDNTLRMKHGTYEKLEDDGLIAPGTGVAGEDIIIGKTAPIPP---DSEELGQ 180

Query: 1176 CDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1235
              R    ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQK
Sbjct: 181  RTRTHSRRDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTRVPQIGDKFASRHGQK 240

Query: 1236 GVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAF 1295
            G IG+   QEDMPF   GI PD+I+NPH  PSRMT+G L+E L  K   + GN  + T F
Sbjct: 241  GTIGITYRQEDMPFTAEGIVPDLIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPF 300

Query: 1296 GGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVY 1339
                +  V + L++ GY  +G ++ + G TG  L+A +Y GP Y
Sbjct: 301  TDLTVESVSKFLLQKGYQSRGLEVMHHGHTGRKLQAQVYLGPTY 344



 Score = 76.3 bits (186), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 48/72 (66%)

Query: 755 PGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRIT 814
           P ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++   
Sbjct: 6   PSIIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMLYL 65

Query: 815 NFHKLPAGKCQI 826
            F +LPAG+  I
Sbjct: 66  RFRELPAGQNAI 77


>gi|120561243|gb|ABM27006.1| RNA polymerase II second largest subunit, partial [Zancudomyces
            culisetae]
 gi|363543580|gb|AEW26268.1| RPB2 [Zancudomyces culisetae]
          Length = 899

 Score =  218 bits (555), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 105/264 (39%), Positives = 167/264 (63%), Gaps = 5/264 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            +VP+P HNQ+PRNTYQ AMGKQAMG +  N Q R+DTL   L Y Q+P+  +  +    F
Sbjct: 524  IVPFPDHNQSPRNTYQSAMGKQAMGILLTNYQVRMDTLANLLYYPQKPLATTHAMEYIKF 583

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ Y+GY+ ED+LIMN++S+DRG  R + +R+      +   +T  R 
Sbjct: 584  SELPAGQNAIVAILCYTGYNQEDSLIMNQSSIDRGLFRSIFFRSYMDEEDKLGMRTMGRF 643

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMA--TPEYK 1091
              P   +  R  +  +  LD DG++APG ++    +++ K+ P I ++++ +   T  + 
Sbjct: 644  EKPSRASTLRLKIGTYEKLDDDGLIAPGTRVTGDDIIIGKTTP-IPIASLELGQRTLAHT 702

Query: 1092 EVPVS--YKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
            ++  S   + +    +++VL+++N +    +K+ +R TR P+IGDKF+SRHGQKG IG++
Sbjct: 703  KLDASKPLRATESGIVDQVLLTTNGDGFKFVKVRVRSTRVPQIGDKFASRHGQKGTIGIV 762

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
               EDMPF   GI PD+I+NPH +
Sbjct: 763  YTSEDMPFTADGIVPDLIINPHAI 786



 Score =  179 bits (454), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 81/174 (46%), Positives = 116/174 (66%)

Query: 1197 LEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICP 1256
            +++VL+++N +    +K+ +R TR P+IGDKF+SRHGQKG IG++   EDMPF   GI P
Sbjct: 718  VDQVLLTTNGDGFKFVKVRVRSTRVPQIGDKFASRHGQKGTIGIVYTSEDMPFTADGIVP 777

Query: 1257 DIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQG 1316
            D+I+NPH  PSRMT+G LIE L  K   + G   + + F    +  +  EL   GY+ +G
Sbjct: 778  DLIINPHAIPSRMTIGHLIECLLSKLATLVGTAADASPFTDVTVDAISAELFSLGYHSRG 837

Query: 1317 KDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRR 1370
             ++ Y+G +G  L + ++ GP YYQ+LKHMV DKIH+R+RGP  +LTRQP   R
Sbjct: 838  LEVMYNGHSGRKLYSQVFFGPTYYQRLKHMVDDKIHSRARGPLQILTRQPVEGR 891



 Score =  124 bits (310), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 61/160 (38%), Positives = 98/160 (61%), Gaps = 6/160 (3%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++ +TIT  L  ++ TGNW  ++  M+ R GV QVL+R ++ S L  + R N+
Sbjct: 220 EFNLSMALKSNTITAGLKYSLATGNWGDQKKAMQSRTGVAQVLNRYTFASTLSHLRRCNT 279

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM HIT  +D  ++L  +  
Sbjct: 280 PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMAHITVGSDSGSILMFLEE 339

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGITCHHKEVCK 343
             +E++    G+ L+      +FVNG+  GI   HKE  +
Sbjct: 340 WAMENLEELVGDSLADSTK--IFVNGVWVGI---HKEAVR 374



 Score =  100 bits (248), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 62/162 (38%), Positives = 80/162 (49%), Gaps = 40/162 (24%)

Query: 691 RFDDFLYEGKIEYLDVNEGNDSHIAVS-----------ESGIRP-------------GVT 726
           R+ D L EG +EYLD  E   + I +S            +G  P             G+T
Sbjct: 446 RWHDLLSEGIVEYLDAEEEETAMIVMSPHELDESRRFVHTGQLPPKDDGRIRSRRNIGIT 505

Query: 727 T--HLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIG 784
           T  H EI P  +LG+CA I              VP+P HNQ+PRNTYQ AMGKQAMG + 
Sbjct: 506 TWTHCEIHPSMILGICASI--------------VPFPDHNQSPRNTYQSAMGKQAMGILL 551

Query: 785 YNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
            N Q R+DTL   L Y Q+P+  +  +    F +LPAG+  I
Sbjct: 552 TNYQVRMDTLANLLYYPQKPLATTHAMEYIKFSELPAGQNAI 593



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 14/114 (12%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           AR+ L    + H+         K  +L  M+ R++  + +    DDRD+YG KRL+LAG 
Sbjct: 131 AREILQKEFLPHVGTQPHNETRKTYFLGYMVHRLLQCVLERRDQDDRDHYGRKRLDLAGP 190

Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYGN 555
           LL+++F ++FK+   ++           +E NLS  +    + +G  + L  GN
Sbjct: 191 LLAMLFRNLFKKMTRDMTRYLQKCIESRREFNLSMALKSNTITAGLKYSLATGN 244


>gi|14520830|ref|NP_126305.1| DNA-directed RNA polymerase subunit B [Pyrococcus abyssi GE5]
 gi|5458046|emb|CAB49536.1| rpoB DNA-directed RNA polymerase, subunit B (EC 2.7.7.6) [Pyrococcus
            abyssi GE5]
 gi|380741372|tpe|CCE70006.1| TPA: DNA-directed RNA polymerase subunit beta [Pyrococcus abyssi GE5]
          Length = 1117

 Score =  218 bits (555), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 112/267 (41%), Positives = 167/267 (62%), Gaps = 11/267 (4%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            L+PYP HN APRNTY   M KQ++G    N + R+DT  + L Y Q P+V S+ ++   +
Sbjct: 651  LIPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGY 710

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR- 1032
               PAGQN  +AV++Y GY++EDA+I+NKAS++RG  R   +R  +   K+Y     D+ 
Sbjct: 711  EDRPAGQNFVVAVLAYHGYNMEDAIIINKASIERGLARSTFFRTYEAEEKKYLGGQTDKF 770

Query: 1033 -ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMP-----TISVSAISMA 1086
             I  P +     +  YRH  LD+DG++ P  ++  + VL+ ++ P        + A+S+ 
Sbjct: 771  EIPSPTVRGYRGEKYYRH--LDEDGLIFPESKVEGKDVLIGRTSPPRFLEERGLGAVSLQ 828

Query: 1087 TPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVI 1146
              E +E  V+ + S    ++KV+++   +   L+K+ +R  R PEIGDKF+SRHGQKGVI
Sbjct: 829  --ERRETSVAVRPSERGVVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVI 886

Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGL 1173
            GLIV QEDMP+ ESGI PD+I+NPHG+
Sbjct: 887  GLIVPQEDMPWTESGIVPDLIVNPHGI 913



 Score =  204 bits (520), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 105/208 (50%), Positives = 141/208 (67%), Gaps = 1/208 (0%)

Query: 1163 CPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRP 1222
             P   +   GL G   + E +E  V+ + S    ++KV+++   +   L+K+ +R  R P
Sbjct: 812  SPPRFLEERGL-GAVSLQERRETSVAVRPSERGVVDKVIITETGDGTKLVKVTVRDLRIP 870

Query: 1223 EIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKA 1282
            EIGDKF+SRHGQKGVIGLIV QEDMP+ ESGI PD+I+NPHG PSRMTVG+L+E + GK 
Sbjct: 871  EIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKV 930

Query: 1283 GLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQK 1342
              ++G   +GTAF G     +++EL   G+ + G++I Y GITG+  EA I+ G +YYQ+
Sbjct: 931  AALKGRRVDGTAFIGEPEEKLRKELEELGFKHTGREIMYDGITGKRFEADIFVGVIYYQR 990

Query: 1343 LKHMVQDKIHARSRGPRVVLTRQPTGRR 1370
            L HMV DKIHARSRGP  VLT+QPT  R
Sbjct: 991  LHHMVADKIHARSRGPVQVLTKQPTEGR 1018



 Score =  103 bits (257), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 54/146 (36%), Positives = 84/146 (57%), Gaps = 9/146 (6%)

Query: 188 IVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEK 247
           I N +R D +T  +  A+ TG W        R GV+Q+L R +Y+S L  + R+ S  ++
Sbjct: 391 IRNSIRPDVLTERIEHALATGAWP-----GGRTGVSQLLDRTNYVSTLSHLRRVTSPLDR 445

Query: 248 TRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIE 307
            +     R L G+ WG +CP++TPEG  CGLVKNLALM  ITT   E+ + + + ++GI 
Sbjct: 446 EQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITTAVPEEEVKEYLMSLGIV 505

Query: 308 HIAMFNGEELSSPGVYLVFVNGILAG 333
            I +       SP ++ V++NG++ G
Sbjct: 506 PIEVRR----PSPELWRVYLNGVIIG 527



 Score = 82.8 bits (203), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/136 (34%), Positives = 71/136 (52%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G  ++ D +  G IEYLD  E  ++++A+    +     THLE+ P  +LG+ A      
Sbjct: 597 GRLKWSDLVRMGVIEYLDAEEEENAYVAMWPWEVTEE-HTHLELMPAAILGLPAS----- 650

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    L+PYP HN APRNTY   M KQ++G    N + R+DT  + L Y Q P+V 
Sbjct: 651 ---------LIPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLLHYPQIPLVN 701

Query: 808 SKTIRITNFHKLPAGK 823
           S+ ++   +   PAG+
Sbjct: 702 SRIMKAVGYEDRPAGQ 717



 Score = 43.9 bits (102), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 38/59 (64%), Gaps = 1/59 (1%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           D W ++ S+ +EKGLV+ H+DS++ FI+  +++++     I  D+ P F +K+  I VG
Sbjct: 13  DLWIVMESYWQEKGLVRQHLDSYNAFIDRGLQEVVDEFGGIKPDI-PDFEVKFGKIRVG 70



 Score = 43.1 bits (100), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 2/67 (2%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVD-IEYTRGSQRVVRSDLVIGRMPIML 399
           V +PE +E     +   P + R+R+LTYSAP+ ++ I   RG ++    ++ IG +PIML
Sbjct: 69  VGEPEFQEPHGQRKPLYPMDARIRNLTYSAPLYLEMIPVIRGIEQEP-VEVRIGELPIML 127

Query: 400 QSSKCVL 406
           +S  C L
Sbjct: 128 KSKVCRL 134



 Score = 43.1 bits (100), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 2/79 (2%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMV-LALSDPDMLDDRDYYGNKRLELAG 514
           A   + +  + HI V       KA YL +M  +++ L+L   D  DD+D+Y NKRL LAG
Sbjct: 291 AEYVIDNNLLPHIGVSPEDRIRKAYYLGMMALKVIELSLGKRDE-DDKDHYANKRLRLAG 349

Query: 515 SLLSLMFEDVFKRFNSELK 533
            LL  +F   F +   +++
Sbjct: 350 DLLKDLFRVAFSQLVKDIQ 368


>gi|389852853|ref|YP_006355087.1| DNA-directed RNA polymerase subunit B [Pyrococcus sp. ST04]
 gi|388250159|gb|AFK23012.1| DNA-directed RNA polymerase subunit B [Pyrococcus sp. ST04]
          Length = 1117

 Score =  218 bits (554), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 109/263 (41%), Positives = 164/263 (62%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            LVPYP HN APRNTY   M KQ++G    N + R+DT  + L Y Q P+V+S+ ++   +
Sbjct: 651  LVPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLLHYPQVPLVDSRIMKAVGY 710

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
               PAGQN  +AV++Y GY++EDA+I+NKAS++RG  R   +R  +   K+Y     D+ 
Sbjct: 711  EDRPAGQNFIVAVLAYQGYNMEDAIIINKASIERGLARSTFFRTYEAEEKKYLGGQTDKF 770

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAI---SMATPEY 1090
              P       +    +R LD+DG++ P  ++  + VL+ ++ P   +      S+A  E 
Sbjct: 771  EIPAPTVRGYRGEKYYRNLDEDGLIFPESRVEGKDVLIGRTSPPRFLEERGLGSVALQER 830

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            +E  V+ + S    ++KV+++   +   L+K+ +R  R PE+GDKF+SRHGQKGVIGLIV
Sbjct: 831  RETSVAVRPSEKGVVDKVIITETGDGTKLVKVTVRDLRIPELGDKFASRHGQKGVIGLIV 890

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMP+ ESGI PD+I+NPHG+
Sbjct: 891  PQEDMPWTESGIVPDLIVNPHGI 913



 Score =  205 bits (522), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 106/208 (50%), Positives = 141/208 (67%), Gaps = 1/208 (0%)

Query: 1163 CPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRP 1222
             P   +   GL G   + E +E  V+ + S    ++KV+++   +   L+K+ +R  R P
Sbjct: 812  SPPRFLEERGL-GSVALQERRETSVAVRPSEKGVVDKVIITETGDGTKLVKVTVRDLRIP 870

Query: 1223 EIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKA 1282
            E+GDKF+SRHGQKGVIGLIV QEDMP+ ESGI PD+I+NPHG PSRMTVG+LIE + GK 
Sbjct: 871  ELGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLIEAIGGKV 930

Query: 1283 GLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQK 1342
              ++G   +GTAF G     +++EL   G+ + G++I Y GITG  LEA I+ G +YYQ+
Sbjct: 931  ASLKGRRVDGTAFIGEPEEKLRKELEELGFKHTGREIMYDGITGRRLEADIFVGVIYYQR 990

Query: 1343 LKHMVQDKIHARSRGPRVVLTRQPTGRR 1370
            L HMV DKIHARSRGP  VLT+QPT  R
Sbjct: 991  LHHMVADKIHARSRGPVQVLTKQPTEGR 1018



 Score =  105 bits (261), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 56/156 (35%), Positives = 88/156 (56%), Gaps = 9/156 (5%)

Query: 188 IVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEK 247
           I N +R D +T  +  A+ TG W        R GV+Q+L R +Y+S L  + R+ S  ++
Sbjct: 391 IRNSIRPDVLTERIEHALATGAWP-----GGRTGVSQLLDRTNYVSTLSHLRRVTSPLDR 445

Query: 248 TRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIE 307
            +     R L G+ WG +CP++TPEG  CGLVKNLALM+ ITT   E+ + + + ++GI 
Sbjct: 446 EQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMSQITTAVPEEEVKEYLMSLGIV 505

Query: 308 HIAMFNGEELSSPGVYLVFVNGILAGITCHHKEVCK 343
            I +       SP ++ V++NG+L G     K + +
Sbjct: 506 PIEVRR----PSPELWRVYLNGVLIGTIEDGKALAQ 537



 Score = 84.7 bits (208), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/136 (35%), Positives = 72/136 (52%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G  ++ D +  G IEYLD  E  ++++A+    +     THLE+ P  +LG+ A      
Sbjct: 597 GRLKWSDLIRMGVIEYLDAEEEENAYVAMWPWEVTEE-HTHLELMPAAILGLPAS----- 650

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    LVPYP HN APRNTY   M KQ++G    N + R+DT  + L Y Q P+V+
Sbjct: 651 ---------LVPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLLHYPQVPLVD 701

Query: 808 SKTIRITNFHKLPAGK 823
           S+ ++   +   PAG+
Sbjct: 702 SRIMKAVGYEDRPAGQ 717



 Score = 43.5 bits (101), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 37/59 (62%), Gaps = 1/59 (1%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           D W ++ S+ +EKGLV+ H+DS++ FI   +++++     I  D+ P F +K+  I VG
Sbjct: 13  DLWIVMESYWQEKGLVRQHLDSYNAFIERGLQEVVNEFGGIKPDI-PDFEVKFGKIRVG 70



 Score = 43.1 bits (100), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 2/67 (2%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVD-IEYTRGSQRVVRSDLVIGRMPIML 399
           V +PE +E     +   P + R+R+LTYSAP+ ++ I   RG ++    ++ IG +PIML
Sbjct: 69  VGQPEFQEPHGQRKPLYPMDARIRNLTYSAPLYLEMIPVIRGIEQEP-VEVRIGELPIML 127

Query: 400 QSSKCVL 406
           +S  C L
Sbjct: 128 KSKVCRL 134



 Score = 41.2 bits (95), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 2/57 (3%)

Query: 478 KAMYLAVMIRRMV-LALSDPDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
           KA YL +M  +++ L+L   D  DD+D+Y NKRL LAG LL  +F   F +   +++
Sbjct: 313 KAYYLGMMALKVIELSLGRRDE-DDKDHYANKRLRLAGDLLKDLFRVAFGQLVKDIQ 368


>gi|45545343|gb|AAS67519.1| DNA-dependent RNA polymerase II second largest subunit, partial
            [Phragmidium sp. MB]
          Length = 931

 Score =  218 bits (554), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 105/264 (39%), Positives = 166/264 (62%), Gaps = 5/264 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N + R+DT+   L Y Q+P+  ++++    F
Sbjct: 556  IIPFPDHNQSPRNTYQSAMGKQAMGVYLTNFRMRMDTMANILYYPQKPLATTRSMEYLRF 615

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R   YR+     K+    + +  
Sbjct: 616  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSFYYRSYMDQEKKAGALSMEEF 675

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPE---- 1089
              P  E   R     +  LD+DGI+ PG ++    +++ K+  +I   +  M   +    
Sbjct: 676  EKPSRETTLRLKQGTYDKLDEDGIINPGTRVSGDDIIIGKTA-SIPEGSEEMGQRDKSHT 734

Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             ++V +  K +    +++VL+++NS++   +K+ +R TR PE GDKF+SRHGQKG +G++
Sbjct: 735  KRDVSMPLKSTENGIIDQVLITTNSDNLKFVKVRIRSTRIPETGDKFASRHGQKGTVGIL 794

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
              QEDMPF   G+CPDII+NPH +
Sbjct: 795  YRQEDMPFTSEGVCPDIIINPHAI 818



 Score =  193 bits (490), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 89/194 (45%), Positives = 127/194 (65%)

Query: 1177 DRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKG 1236
            D+    ++V +  K +    +++VL+++NS++   +K+ +R TR PE GDKF+SRHGQKG
Sbjct: 730  DKSHTKRDVSMPLKSTENGIIDQVLITTNSDNLKFVKVRIRSTRIPETGDKFASRHGQKG 789

Query: 1237 VIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFG 1296
             +G++  QEDMPF   G+CPDII+NPH  PSRMT+G L+E L  K   + GN  + T F 
Sbjct: 790  TVGILYRQEDMPFTSEGVCPDIIINPHAIPSRMTIGHLVECLLSKVSTITGNEGDATPFS 849

Query: 1297 GTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSR 1356
               +  +   L  +GY+ +G +I ++G TG  L A  Y GP YYQ+LKHMV DKIH+R+R
Sbjct: 850  EVTVEAISSLLKENGYHSRGLEIMFNGHTGRKLRAQCYLGPTYYQRLKHMVNDKIHSRAR 909

Query: 1357 GPRVVLTRQPTGRR 1370
            GP  +LTRQP   R
Sbjct: 910  GPVQILTRQPVEGR 923



 Score =  116 bits (290), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 56/150 (37%), Positives = 95/150 (63%), Gaps = 4/150 (2%)

Query: 186 FDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINSQ 244
           F++   ++ +TITN L  ++ TGNW  ++  M+ + GV+QVL+R ++ S L  + R N+ 
Sbjct: 239 FNLNAAVKSNTITNGLKYSLATGNWGDQKKAMQAKAGVSQVLNRYTFASTLSHLRRCNTP 298

Query: 245 FEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNI 304
             +  K++ PR L  S WGM+CP++TPEG+ACGLVKNLALM++I+  +    +++ +   
Sbjct: 299 IGRDGKIAKPRQLHNSHWGMVCPAETPEGQACGLVKNLALMSYISVGSPSAPIVEFLEEW 358

Query: 305 GIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
           G+E +  ++ +  S      VFVNG+  G+
Sbjct: 359 GMESLDEYSSDMASGTK---VFVNGVWQGV 385



 Score = 87.8 bits (216), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 59/100 (59%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 540 THCEIHPAMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVYLTN 585

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
            + R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 586 FRMRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNAI 625


>gi|55273997|gb|AAV48869.1| RNA polymerase II second largest subunit [Clavaria zollingeri]
          Length = 694

 Score =  218 bits (554), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 109/263 (41%), Positives = 163/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 331  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKF 390

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 391  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEF 450

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS-AISMATPEY-- 1090
              P  E   R     +  L+ DG++APG  +    +++ K+ P    S  +   T  +  
Sbjct: 451  EKPTRETTLRMKHGNYDKLESDGLIAPGTGVRGDDIIIGKTAPIPPDSEELGQRTRSHTK 510

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ LR TR P+IGDKF+SRHGQKG IG+  
Sbjct: 511  RDVSTPLKSTESGVIDQVLITTNSEGQKFVKVRLRSTRVPQIGDKFASRHGQKGTIGITY 570

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 571  RQEDMPFTAEGIVPDIIINPHAI 593



 Score =  193 bits (491), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 91/184 (49%), Positives = 121/184 (65%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++NSE    +K+ LR TR P+IGDKF+SRHGQKG IG+  
Sbjct: 511  RDVSTPLKSTESGVIDQVLITTNSEGQKFVKVRLRSTRVPQIGDKFASRHGQKGTIGITY 570

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 571  RQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVES 630

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
            V   L + GY  +G ++ Y G TG  L+A +Y GP YYQ+LKHMV DKIH+R+RGP  +L
Sbjct: 631  VSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMVDDKIHSRARGPVQIL 690

Query: 1363 TRQP 1366
            TRQP
Sbjct: 691  TRQP 694



 Score =  113 bits (282), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 92/151 (60%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F+I   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 25  EFNIALAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT 84

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM  I+  +    +++ +  
Sbjct: 85  PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMACISVGSSSAPVIEFLEE 144

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E  ++      ++P    VFVNG+  G+
Sbjct: 145 WGLE--SLEENAHSTTPCTK-VFVNGVWMGV 172



 Score = 92.0 bits (227), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/177 (34%), Positives = 89/177 (50%), Gaps = 22/177 (12%)

Query: 706 VNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQ 765
            N+G     A  +SGI     TH EI P  +LG+CA I              +P+P HNQ
Sbjct: 294 ANDGEFDPAARLKSGINAHTWTHCEIHPSMILGICASI--------------IPFPDHNQ 339

Query: 766 APRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQ 825
           +PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  
Sbjct: 340 SPRNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNA 399

Query: 826 ISPGGAEELTARESCHEVLKIISFSISVAVFDSVWLG-----DVKQGVHQLSEEKEP 877
           I    A    +  +  + + +   SI   +F S++       + K GV QL E ++P
Sbjct: 400 IV---AILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKP 453


>gi|46277251|gb|AAS86816.1| RNA polymerase II second largest subunit, partial [Cycas revoluta]
          Length = 567

 Score =  218 bits (554), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 110/261 (42%), Positives = 160/261 (61%), Gaps = 1/261 (0%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 202  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHF 261

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L YR+ +   K+      +  
Sbjct: 262  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFYRSYRDEEKRMGTLVKEEF 321

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYK-E 1092
              P  E  T      +  LD DG+  PG ++    V++ K+ P     A   A    K +
Sbjct: 322  GRPNRENTTGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPITQDEAGGQAARYTKRD 381

Query: 1093 VPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQ 1152
               S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   Q
Sbjct: 382  QSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQ 441

Query: 1153 EDMPFNESGICPDIIMNPHGL 1173
            EDMP+   GI PDII+NPH +
Sbjct: 442  EDMPWTVEGITPDIIVNPHAI 462



 Score =  181 bits (460), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 86/188 (45%), Positives = 121/188 (64%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++   S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+  
Sbjct: 380  RDQSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTY 439

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMP+   GI PDII+NPH  PSRMT+G+LIE + GK     G   + T F    + +
Sbjct: 440  TQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDN 499

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
            + + L + GY  +G +  Y+G TG  L A I+ GP YYQ+LKHMV DKIH+R RGP  +L
Sbjct: 500  ISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQIL 559

Query: 1363 TRQPTGRR 1370
            TRQP   R
Sbjct: 560  TRQPAEGR 567



 Score =  101 bits (252), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/172 (37%), Positives = 87/172 (50%), Gaps = 40/172 (23%)

Query: 677 RPTFLNMHQFLGFKRFD---------------DFLYEGKIEYLDVNEGNDSHIAVSESGI 721
           RP F+   Q L  K+ D               D + +G IEY+D  E   + I+++ S +
Sbjct: 110 RPLFIVEKQRLLIKKSDIRTLQQRESPEEGWHDLVAKGFIEYVDTEEEETTMISMTISDL 169

Query: 722 -----RPGVT------THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNT 770
                 P  +      TH EI P  +LGVCA I              +P+P HNQ+PRNT
Sbjct: 170 VNARNSPSTSSSIVKYTHCEIHPSLILGVCASI--------------IPFPDHNQSPRNT 215

Query: 771 YQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAG 822
           YQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F +LPAG
Sbjct: 216 YQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG 267



 Score = 51.6 bits (122), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 40/69 (57%), Gaps = 8/69 (11%)

Query: 269 DTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMFNGEELSS---PGVYLV 325
           +TPEG+ACGLVKNLALM +IT  +    +L+ +     E  +  N EE+S    P    +
Sbjct: 1   ETPEGQACGLVKNLALMVYITVGSAANPILEFL-----EEWSTENFEEISPAVIPNATKI 55

Query: 326 FVNGILAGI 334
           FVNG   GI
Sbjct: 56  FVNGCWVGI 64


>gi|194320293|gb|ACF48387.1| RNA polymerase II second largest subunit [Rhizocarpon oederi]
          Length = 696

 Score =  218 bits (554), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 106/264 (40%), Positives = 162/264 (61%), Gaps = 5/264 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 355  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDQRMDTMANILYYPQKPLATTRSMEFLKF 414

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR      K+   Q  ++ 
Sbjct: 415  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYVDQEKRVGMQLVEQF 474

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPE---- 1089
              P+     R     +  LD DGI+APG +I    +++ K+ P I+  A  +        
Sbjct: 475  EKPMRSDTLRLKHGTYDKLDDDGIIAPGVRISGEDIIIGKTAP-IAADAEELGQRTKLHV 533

Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             ++V    + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHGQKG IG+ 
Sbjct: 534  KRDVSTPLRSTESGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGIT 593

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
              QEDMPF   G+ PD+I+NPH +
Sbjct: 594  YRQEDMPFTSEGVVPDLIINPHAI 617



 Score =  147 bits (370), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 80/230 (34%), Positives = 123/230 (53%), Gaps = 11/230 (4%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESGICPDIIMNPHGLK 1174
            L+ Q  +P   D    +HG        G+I  G+ +  ED+     G    I  +   L 
Sbjct: 470  LVEQFEKPMRSDTLRLKHGTYDKLDDDGIIAPGVRISGEDIII---GKTAPIAADAEELG 526

Query: 1175 GCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQ 1234
               ++   ++V    + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHGQ
Sbjct: 527  QRTKLHVKRDVSTPLRSTESGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQ 586

Query: 1235 KGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTA 1294
            KG IG+   QEDMPF   G+ PD+I+NPH  PSRMT+  LIE    K   + G   + T 
Sbjct: 587  KGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATP 646

Query: 1295 FGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLK 1344
            F    +  V   L  HGY  +G ++ Y+G TG  L A ++ GP YYQ+L+
Sbjct: 647  FTDVTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLR 696



 Score =  108 bits (271), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 52/151 (34%), Positives = 90/151 (59%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  T+T+ L  ++ TGNW   ++    + GV+QVL+R ++ S L  + R N+
Sbjct: 32  EFNLTLGVKSTTLTSGLKYSLATGNWGEQKKAASSKAGVSQVLNRYTFASTLSHLRRTNT 91

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT     + ++  M  
Sbjct: 92  PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMVQ 151

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
             ++ +  +  E  S P    +FVNG+  G+
Sbjct: 152 RNMDLLEEY--EPQSYPNATKIFVNGVWVGV 180



 Score = 90.5 bits (223), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 339 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 384

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 385 YDQRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 424


>gi|83415479|gb|ABC17947.1| RNA polymerase II second largest subunit, partial [Zancudomyces
            culisetae]
          Length = 718

 Score =  218 bits (554), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 105/264 (39%), Positives = 166/264 (62%), Gaps = 5/264 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            +VP+P HNQ+PRNTYQ AMGKQAMG +  N Q R+DTL   L Y Q+P+  +  +    F
Sbjct: 343  IVPFPDHNQSPRNTYQSAMGKQAMGILLTNYQVRMDTLANLLYYPQKPLATTHAMEYIKF 402

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ Y+GY+ ED+LIMN++S+DRG  R + +R+      +   +T  R 
Sbjct: 403  SELPAGQNAIVAILCYTGYNQEDSLIMNQSSIDRGLFRSIFFRSYMDEEDKLGMRTMGRF 462

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMA--TPEYK 1091
              P   +  R  +  +  LD DG++APG ++    +++ K+ P I ++++ +   T  + 
Sbjct: 463  EKPSRASTLRLKIGTYEKLDDDGLIAPGTRVTGDDIIIGKTTP-IPIASLELGQRTLAHT 521

Query: 1092 EVPVS--YKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
            ++  S   + +    +++VL+ +N +    +K+ +R TR P+IGDKF+SRHGQKG IG++
Sbjct: 522  KLDASKPLRATESGIVDQVLLXTNGDGFKFVKVRVRSTRVPQIGDKFASRHGQKGTIGIV 581

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
               EDMPF   GI PD+I+NPH +
Sbjct: 582  YTSEDMPFTADGIVPDLIINPHAI 605



 Score =  179 bits (453), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 81/174 (46%), Positives = 115/174 (66%)

Query: 1197 LEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICP 1256
            +++VL+ +N +    +K+ +R TR P+IGDKF+SRHGQKG IG++   EDMPF   GI P
Sbjct: 537  VDQVLLXTNGDGFKFVKVRVRSTRVPQIGDKFASRHGQKGTIGIVYTSEDMPFTADGIVP 596

Query: 1257 DIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQG 1316
            D+I+NPH  PSRMT+G LIE L  K   + G   + + F    +  +  EL   GY+ +G
Sbjct: 597  DLIINPHAIPSRMTIGHLIECLLSKLATLVGTAADASPFTDVTVDAISAELFSLGYHSRG 656

Query: 1317 KDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRR 1370
             ++ Y+G +G  L + ++ GP YYQ+LKHMV DKIH+R+RGP  +LTRQP   R
Sbjct: 657  LEVMYNGHSGRKLYSQVFFGPTYYQRLKHMVDDKIHSRARGPLQILTRQPVEGR 710



 Score =  124 bits (310), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 61/160 (38%), Positives = 98/160 (61%), Gaps = 6/160 (3%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++ +TIT  L  ++ TGNW  ++  M+ R GV QVL+R ++ S L  + R N+
Sbjct: 39  EFNLSMALKSNTITAGLKYSLATGNWGDQKKAMQSRTGVAQVLNRYTFASTLSHLRRCNT 98

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM HIT  +D  ++L  +  
Sbjct: 99  PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMAHITVGSDSGSILMFLEE 158

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGITCHHKEVCK 343
             +E++    G+ L+      +FVNG+  GI   HKE  +
Sbjct: 159 WAMENLEELVGDSLADS--TKIFVNGVWVGI---HKEAVR 193



 Score =  100 bits (249), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 62/162 (38%), Positives = 80/162 (49%), Gaps = 40/162 (24%)

Query: 691 RFDDFLYEGKIEYLDVNEGNDSHIAVS-----------ESGIRP-------------GVT 726
           R+ D L EG +EYLD  E   + I +S            +G  P             G+T
Sbjct: 265 RWHDLLSEGIVEYLDAEEEETAMIVMSPHELDESRRFVHTGQLPPKDDGRIRSRRNIGIT 324

Query: 727 T--HLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIG 784
           T  H EI P  +LG+CA I              VP+P HNQ+PRNTYQ AMGKQAMG + 
Sbjct: 325 TWTHCEIHPSMILGICASI--------------VPFPDHNQSPRNTYQSAMGKQAMGILL 370

Query: 785 YNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
            N Q R+DTL   L Y Q+P+  +  +    F +LPAG+  I
Sbjct: 371 TNYQVRMDTLANLLYYPQKPLATTHAMEYIKFSELPAGQNAI 412


>gi|93278283|gb|ABF06597.1| RNA polymerase II second largest subunit, partial [Baeospora myosura]
          Length = 690

 Score =  218 bits (554), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 108/263 (41%), Positives = 162/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 346  IIPFPDHNQSPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKF 405

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 406  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEF 465

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  E   R     +  L++DG++APG  +    +++ K+ P    S        T   
Sbjct: 466  EKPARENTLRMKHGTYDKLEEDGLIAPGTGVRGEDIIIGKTAPIPPDSEELGQRTRTHTR 525

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 526  RDVSTPLKSTENGIVDQVLITTNSEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 585

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 586  RQEDMPFTAEGIVPDIIINPHAI 608



 Score =  162 bits (410), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 90/232 (38%), Positives = 128/232 (55%), Gaps = 11/232 (4%)

Query: 1124 LRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESGICPDIIMNPHGLKG 1175
            L +  +P   +    +HG      + G+I  G  V  ED+   ++   P    +   L  
Sbjct: 462  LEEFEKPARENTLRMKHGTYDKLEEDGLIAPGTGVRGEDIIIGKTAPIPP---DSEELGQ 518

Query: 1176 CDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1235
              R    ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQK
Sbjct: 519  RTRTHTRRDVSTPLKSTENGIVDQVLITTNSEGQKFVKIRVRSTRIPQIGDKFASRHGQK 578

Query: 1236 GVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAF 1295
            G IG+   QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F
Sbjct: 579  GTIGITYRQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPF 638

Query: 1296 GGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMV 1347
                +  V   L + GY  +G ++ Y G TG  L+A +Y GP YYQ+LKHMV
Sbjct: 639  TDLTVESVSMYLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMV 690



 Score =  110 bits (274), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 92/151 (60%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKM-ERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 40  EFNLALAVKHQTITNGLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNT 99

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM  I+  +    +++ +  
Sbjct: 100 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEE 159

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E  ++      ++P    VFVNG+  G+
Sbjct: 160 WGLE--SLEENAHSTTPCTK-VFVNGVWMGV 187



 Score = 91.7 bits (226), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 60/179 (33%), Positives = 90/179 (50%), Gaps = 22/179 (12%)

Query: 704 LDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHH 763
           +  N+G     A  ++GI     TH EI P  +LG+CA I              +P+P H
Sbjct: 307 IHANDGEFDPAARLKAGINAHTWTHCEIHPSMILGICASI--------------IPFPDH 352

Query: 764 NQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
           NQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+
Sbjct: 353 NQSPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQ 412

Query: 824 CQISPGGAEELTARESCHEVLKIISFSISVAVFDSVWLG-----DVKQGVHQLSEEKEP 877
             I    A    +  +  + + +   SI   +F S++       + K GV QL E ++P
Sbjct: 413 NAIV---AILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKP 468


>gi|45545331|gb|AAS67513.1| DNA-dependent RNA polymerase II second largest subunit, partial
            [Hydnum repandum]
          Length = 887

 Score =  217 bits (553), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 105/263 (39%), Positives = 160/263 (60%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DT+   L Y Q+P+  ++++    F
Sbjct: 545  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNYQVRMDTMANILYYPQKPLATTRSMEYLRF 604

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNAT+A++ YSGY+ ED++IMN++S+DRG  R + YR+     K+      +  
Sbjct: 605  RELPAGQNATVAILCYSGYNQEDSVIMNQSSIDRGLFRSMYYRSYTDAEKKVGVLPLEEF 664

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  L+ DG++APG  +    +++ K+ P    S      M T   
Sbjct: 665  EKPTRDTTLRMKHGTYEKLEDDGLIAPGTGVAGEDIIIGKTAPLPPDSEELGQRMRTHTR 724

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VLV++N +    +K+ +R TR P++GDKF+SRHGQKG +G+  
Sbjct: 725  RDVSTPLKSTENGIVDQVLVTTNQDGLKFVKIRIRSTRIPQVGDKFASRHGQKGTVGITY 784

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
              EDMPF   GI PDII+NPH +
Sbjct: 785  RHEDMPFTAEGITPDIIINPHAI 807



 Score =  154 bits (388), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 71/163 (43%), Positives = 102/163 (62%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VLV++N +    +K+ +R TR P++GDKF+SRHGQKG +G+  
Sbjct: 725  RDVSTPLKSTENGIVDQVLVTTNQDGLKFVKIRIRSTRIPQVGDKFASRHGQKGTVGITY 784

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
              EDMPF   GI PDII+NPH  PSRMT+G LIE L  K   + GN  + T F    +  
Sbjct: 785  RHEDMPFTAEGITPDIIINPHAIPSRMTIGHLIECLLSKLATLIGNEGDATPFTELTVES 844

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKH 1345
            V + L  +GY  +G ++ Y G +G  L+A +Y GP YYQ+LKH
Sbjct: 845  VSQLLRENGYQSRGLEVMYHGHSGRKLQAQVYLGPTYYQRLKH 887



 Score =  108 bits (270), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 92/151 (60%), Gaps = 6/151 (3%)

Query: 186 FDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINSQ 244
           F+I   ++ +TITN L  ++ TGNW  ++  M  + GV+QVL+R ++ S L  + R N+ 
Sbjct: 239 FNISIAVKSNTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTFASTLSHLRRCNTP 298

Query: 245 FEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNI 304
             +  K++ PR L  + WGM+CP++TPEG+ACGLVKNL+LM  I+  +    +++ +   
Sbjct: 299 LGRDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMACISVGSLSAPVIEFLQEW 358

Query: 305 GIEHIAMFNGEELSSPG-VYLVFVNGILAGI 334
           G+E +     E  ++ G    VFVNG+  G+
Sbjct: 359 GLESLE----ENANAHGSATKVFVNGVWMGV 385



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/97 (44%), Positives = 58/97 (59%), Gaps = 14/97 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 529 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYLTN 574

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
            Q R+DT+   L Y Q+P+  ++++    F +LPAG+
Sbjct: 575 YQVRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQ 611



 Score = 57.0 bits (136), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 14/114 (12%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A++ L    + H+ +       KA +   MI R++LA  +   LDDRD++G KRL+LAG 
Sbjct: 149 AQEILQKEMLPHVSMGEGSESKKAFFFGYMIHRLLLAALERRELDDRDHFGKKRLDLAGP 208

Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYGN 555
           LL+ +F  +F++   ++           K+ N+S  V    + +G  + L  GN
Sbjct: 209 LLASLFRMLFRKLTKDVYRHLQKCVETHKDFNISIAVKSNTITNGLKYSLATGN 262


>gi|88976107|gb|ABD59032.1| RNA polymerase II second largest subunit, partial [Cantharocybe
            gruberi]
          Length = 675

 Score =  217 bits (553), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 107/263 (40%), Positives = 162/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 345  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKF 404

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 405  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEF 464

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              PL +   R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 465  EKPLRDNTLRMKHGTYDKLEDDGLIAPGTGVAGEDIIIGKTAPIPPDSEELGQRTRTHTR 524

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 525  RDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITY 584

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PD+I+NPH +
Sbjct: 585  RQEDMPFTAEGIVPDLIINPHAI 607



 Score =  135 bits (340), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 65/156 (41%), Positives = 94/156 (60%)

Query: 1178 RITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV 1237
            R    ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG 
Sbjct: 520  RTHTRRDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGT 579

Query: 1238 IGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGG 1297
            IG+   QEDMPF   GI PD+I+NPH  PSRMT+G L+E L  K   + GN  + T F  
Sbjct: 580  IGITYRQEDMPFTAEGIVPDLIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTD 639

Query: 1298 TKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYI 1333
              +  V   L + GY  +G ++ + G TG  L+A +
Sbjct: 640  LTVESVSTFLRQKGYQSRGLEVMFHGHTGRKLQAQV 675



 Score =  111 bits (278), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 92/151 (60%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 39  EFNLALAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT 98

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM  I+  +    +++ +  
Sbjct: 99  PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEE 158

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E  ++      S+P    VFVNG+  G+
Sbjct: 159 WGLE--SLEENAHSSTPCTK-VFVNGVWMGV 186



 Score = 88.6 bits (218), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/121 (38%), Positives = 65/121 (53%), Gaps = 14/121 (11%)

Query: 706 VNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQ 765
            N+G     A  ++G      TH EI P  +LG+CA I              +P+P HNQ
Sbjct: 308 ANDGEFDPAARLKAGTHAHTWTHCEIHPSMILGICASI--------------IPFPDHNQ 353

Query: 766 APRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQ 825
           +PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  
Sbjct: 354 SPRNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNA 413

Query: 826 I 826
           I
Sbjct: 414 I 414


>gi|357216645|gb|AET71056.1| RNA polymerase II second largest subunit, partial [Trametes cubensis]
          Length = 617

 Score =  217 bits (553), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 107/263 (40%), Positives = 162/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  +++++   F
Sbjct: 346  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMQYLRF 405

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 406  RELPAGQNAVVAILCYSGYNQEDSVIMNQSSIDRGLFRSMYYRSYMDLEKKSGVQQLEEF 465

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 466  EKPTRDTTLRMKHGTYDKLEDDGLIAPGTNVNGEDIIIGKTAPIPPDSEELGQRTRTHTK 525

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 526  RDVSTPLKSTESGIIDQVLITTNSEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 585

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 586  RQEDMPFTAEGITPDIIINPHAI 608



 Score =  110 bits (276), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 94/151 (62%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++ +TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 40  EFNLSLAVKHNTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT 99

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNL+LM+ I+  +    +++ +  
Sbjct: 100 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSCISVGSLSAPVIEFLEE 159

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E  ++      S+P    VFVNG+  G+
Sbjct: 160 WGLE--SLEENAHSSTPCTK-VFVNGVWMGV 187



 Score =  108 bits (271), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 48/92 (52%), Positives = 65/92 (70%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 526  RDVSTPLKSTESGIIDQVLITTNSEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 585

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKL 1274
             QEDMPF   GI PDII+NPH  PSRMT+G L
Sbjct: 586  RQEDMPFTAEGITPDIIINPHAIPSRMTIGHL 617



 Score = 87.8 bits (216), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 77/162 (47%), Gaps = 43/162 (26%)

Query: 691 RFDDFLYEGKIEYLDVNEGNDSHIAVS----------ESGIRPGVT-------------- 726
           ++D+ + +G IE LD  E     I ++           +GI P                 
Sbjct: 265 KWDNLIKDGVIELLDAEEEETVMICMTPEDLENSRLRAAGIDPHADDGEVDPSARLKAPT 324

Query: 727 -----THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMG 781
                TH EI P  +LGVCA I              +P+P HNQ+PRNTYQ AMGKQAMG
Sbjct: 325 NTHTWTHCEIHPSMILGVCASI--------------IPFPDHNQSPRNTYQSAMGKQAMG 370

Query: 782 CIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
               N   R+DT+   L Y Q+P+  +++++   F +LPAG+
Sbjct: 371 IYLTNFLVRMDTMANILYYPQKPLATTRSMQYLRFRELPAGQ 412


>gi|261196850|ref|XP_002624828.1| DNA-directed RNA polymerase II polypeptide [Ajellomyces dermatitidis
            SLH14081]
 gi|239596073|gb|EEQ78654.1| DNA-directed RNA polymerase II polypeptide [Ajellomyces dermatitidis
            SLH14081]
          Length = 1258

 Score =  217 bits (553), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 105/263 (39%), Positives = 162/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R++T+   L Y Q+P+  ++++    F
Sbjct: 787  IIPFPDHNQSPRNTYQAAMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSMEFLKF 846

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQN+ +A+  YSGY+ ED++IMN++S+DRG  R L YR      K       +R 
Sbjct: 847  RELPAGQNSIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMVGMTVVERF 906

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAISMATPEYKE 1092
              P+     R     +  +D DGIVAPG ++    +++ K+ P       +   T ++ +
Sbjct: 907  EKPMRSDTLRMKHGTYDKVDDDGIVAPGVRVSGEDIIIGKTAPLAPEAEELGQRTKQHTK 966

Query: 1093 VPVS--YKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            + VS   + +    +++VLVS++++D   +K+ +R T+ P+IGDKF+SRHGQKG IG+  
Sbjct: 967  LDVSTPLRSTESGIVDQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITY 1026

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PD+I+NPH +
Sbjct: 1027 RQEDMPFTREGIVPDLIINPHAI 1049



 Score =  183 bits (464), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 97/260 (37%), Positives = 148/260 (56%), Gaps = 15/260 (5%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESGICPDIIMNPHGLK 1174
            ++ +  +P   D    +HG        G++  G+ V  ED+   ++       + P   +
Sbjct: 902  VVERFEKPMRSDTLRMKHGTYDKVDDDGIVAPGVRVSGEDIIIGKTAP-----LAPEAEE 956

Query: 1175 GCDRITEYKEVPVS--YKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRH 1232
               R  ++ ++ VS   + +    +++VLVS++++D   +K+ +R T+ P+IGDKF+SRH
Sbjct: 957  LGQRTKQHTKLDVSTPLRSTESGIVDQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRH 1016

Query: 1233 GQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEG 1292
            GQKG IG+   QEDMPF   GI PD+I+NPH  PSRMT+  LIE    K   + G   + 
Sbjct: 1017 GQKGTIGITYRQEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDA 1076

Query: 1293 TAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIH 1352
            T F    +  +   L  HGY  +G ++ Y+G TG  L A ++ GP YYQ+L+HMV DKIH
Sbjct: 1077 TPFTDVTVDSISSLLREHGYQSRGFEVMYNGYTGRKLVAQVFLGPTYYQRLRHMVDDKIH 1136

Query: 1353 ARSRGPRVVLTRQPTGRRWK 1372
            AR+RGP  +LTRQP   R +
Sbjct: 1137 ARARGPTQILTRQPVEGRAR 1156



 Score =  111 bits (277), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 55/144 (38%), Positives = 85/144 (59%), Gaps = 3/144 (2%)

Query: 192 MRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRK 250
           ++  T++  L  A+ TGNW   ++    + GV+QVL+R +Y S L  + R N+   +  K
Sbjct: 470 VKASTLSGGLKYALATGNWGEQKKAASSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGK 529

Query: 251 VSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIA 310
           ++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT     + ++  M    +E + 
Sbjct: 530 IAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLE 589

Query: 311 MFNGEELSSPGVYLVFVNGILAGI 334
            F  E   SP    VFVNG+  G+
Sbjct: 590 EF--EPQVSPNATKVFVNGVWVGV 611



 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/100 (42%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 771 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQAAMGKQAMGVFLTN 816

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R++T+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 817 FDQRMETMANILYYPQKPLATTRSMEFLKFRELPAGQNSI 856



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 44/78 (56%), Gaps = 2/78 (2%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMV-LALSDPDMLDDRDYYGNKRLELAG 514
           ARD +    + HI         KA +L  M+ R++  AL   D +DDRD++G KRL+LAG
Sbjct: 374 ARDIIQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRD-VDDRDHFGKKRLDLAG 432

Query: 515 SLLSLMFEDVFKRFNSEL 532
            LL+ +F  +F R   +L
Sbjct: 433 PLLANLFRILFMRVTKDL 450



 Score = 42.0 bits (97), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 9/62 (14%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSD---------VDPLFYL 164
           D W ++ SF + KGLV   +DSFD FI+  +++L++    +  D         +DP+   
Sbjct: 24  DCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTLAPSEDEIDPVVLR 83

Query: 165 KY 166
           +Y
Sbjct: 84  RY 85


>gi|119644161|gb|ABL85609.1| RNA polymerase II second largest subunit [Vulpicida pinastri]
          Length = 718

 Score =  217 bits (553), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 105/263 (39%), Positives = 162/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DT+   L Y Q+P+  ++++    F
Sbjct: 370  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYQQRMDTMANILYYPQKPLATTRSMEFLKF 429

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR      K+      ++ 
Sbjct: 430  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQEKRIGMSVVEQF 489

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAISMATPEY-- 1090
              P+     R     +  LD+DG+VAPG ++    +++ K+ P       +   T  +  
Sbjct: 490  EKPMRSDTLRLKHGTYDKLDEDGLVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKLHVK 549

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    + +    +++VL+S+N+E    +K+ +R T+ P+IGDKF+SRHGQKG IG+  
Sbjct: 550  RDVSTPLRSTENGIVDQVLLSTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGITY 609

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   G+ PD+I+NPH +
Sbjct: 610  RQEDMPFTSEGLVPDLIINPHAI 632



 Score =  160 bits (404), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 87/238 (36%), Positives = 132/238 (55%), Gaps = 13/238 (5%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESG-ICPDIIMNPHGL 1173
            ++ Q  +P   D    +HG      + G++  G+ V  ED+   ++  I PD       L
Sbjct: 485  VVEQFEKPMRSDTLRLKHGTYDKLDEDGLVAPGVRVSGEDIIIGKTAPIAPD----AEEL 540

Query: 1174 KGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
                ++   ++V    + +    +++VL+S+N+E    +K+ +R T+ P+IGDKF+SRHG
Sbjct: 541  GQRTKLHVKRDVSTPLRSTENGIVDQVLLSTNAEGLRFVKVRMRTTKIPQIGDKFASRHG 600

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGT 1293
            QKG IG+   QEDMPF   G+ PD+I+NPH  PSRMT+  LIE L  K   + G   + T
Sbjct: 601  QKGTIGITYRQEDMPFTSEGLVPDLIINPHAIPSRMTIAHLIECLLSKVSSLRGFEGDAT 660

Query: 1294 AFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKI 1351
             F    +  V   L  HGY  +G ++ Y+G TG  L   ++ GP YYQ+L+HMV DKI
Sbjct: 661  PFTEVTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVTQVFLGPTYYQRLRHMVDDKI 718



 Score =  111 bits (278), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 91/151 (60%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++   +TN L  ++ TGNW  ++     + GV+QVL+R ++ S L  + R N+
Sbjct: 46  EFNMTLAVKSTHLTNGLRYSLATGNWGDQKKAASVKAGVSQVLNRYTFASTLSHLRRTNT 105

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT     + ++  M  
Sbjct: 106 PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIVDFMIQ 165

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
             +E +  +  E L+SP    +FVNG+  G+
Sbjct: 166 RNMEVLEEY--EPLNSPNATKIFVNGVWVGV 194



 Score = 92.4 bits (228), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 44/100 (44%), Positives = 59/100 (59%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 354 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 399

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
            Q R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 400 YQQRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 439



 Score = 42.0 bits (97), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 14/70 (20%)

Query: 500 DDRDYYGNKRLELAGSLLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVS 545
           DDRD++G KRL+LAG LL+ +F   F +   ++           KE N++  V   +L +
Sbjct: 1   DDRDHFGKKRLDLAGPLLASLFRGTFNKLTKDVYKYLQKCVENNKEFNMTLAVKSTHLTN 60

Query: 546 GWWFELKYGN 555
           G  + L  GN
Sbjct: 61  GLRYSLATGN 70


>gi|239609658|gb|EEQ86645.1| DNA-directed RNA polymerase II polypeptide [Ajellomyces dermatitidis
            ER-3]
 gi|327357696|gb|EGE86553.1| DNA-directed RNA polymerase [Ajellomyces dermatitidis ATCC 18188]
          Length = 1258

 Score =  217 bits (553), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 105/263 (39%), Positives = 162/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R++T+   L Y Q+P+  ++++    F
Sbjct: 787  IIPFPDHNQSPRNTYQAAMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSMEFLKF 846

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQN+ +A+  YSGY+ ED++IMN++S+DRG  R L YR      K       +R 
Sbjct: 847  RELPAGQNSIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMVGMTVVERF 906

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAISMATPEYKE 1092
              P+     R     +  +D DGIVAPG ++    +++ K+ P       +   T ++ +
Sbjct: 907  EKPMRSDTLRMKHGTYDKVDDDGIVAPGVRVSGEDIIIGKTAPLAPEAEELGQRTKQHTK 966

Query: 1093 VPVS--YKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            + VS   + +    +++VLVS++++D   +K+ +R T+ P+IGDKF+SRHGQKG IG+  
Sbjct: 967  LDVSTPLRSTESGIVDQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITY 1026

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PD+I+NPH +
Sbjct: 1027 RQEDMPFTREGIVPDLIINPHAI 1049



 Score =  182 bits (463), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 97/260 (37%), Positives = 148/260 (56%), Gaps = 15/260 (5%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESGICPDIIMNPHGLK 1174
            ++ +  +P   D    +HG        G++  G+ V  ED+   ++       + P   +
Sbjct: 902  VVERFEKPMRSDTLRMKHGTYDKVDDDGIVAPGVRVSGEDIIIGKTAP-----LAPEAEE 956

Query: 1175 GCDRITEYKEVPVS--YKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRH 1232
               R  ++ ++ VS   + +    +++VLVS++++D   +K+ +R T+ P+IGDKF+SRH
Sbjct: 957  LGQRTKQHTKLDVSTPLRSTESGIVDQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRH 1016

Query: 1233 GQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEG 1292
            GQKG IG+   QEDMPF   GI PD+I+NPH  PSRMT+  LIE    K   + G   + 
Sbjct: 1017 GQKGTIGITYRQEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDA 1076

Query: 1293 TAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIH 1352
            T F    +  +   L  HGY  +G ++ Y+G TG  L A ++ GP YYQ+L+HMV DKIH
Sbjct: 1077 TPFTDVTVDSISSLLREHGYQSRGFEVMYNGYTGRKLVAQVFLGPTYYQRLRHMVDDKIH 1136

Query: 1353 ARSRGPRVVLTRQPTGRRWK 1372
            AR+RGP  +LTRQP   R +
Sbjct: 1137 ARARGPTQILTRQPVEGRAR 1156



 Score =  111 bits (277), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 55/144 (38%), Positives = 85/144 (59%), Gaps = 3/144 (2%)

Query: 192 MRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRK 250
           ++  T++  L  A+ TGNW   ++    + GV+QVL+R +Y S L  + R N+   +  K
Sbjct: 470 VKASTLSGGLKYALATGNWGEQKKAASSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGK 529

Query: 251 VSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIA 310
           ++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT     + ++  M    +E + 
Sbjct: 530 IAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLE 589

Query: 311 MFNGEELSSPGVYLVFVNGILAGI 334
            F  E   SP    VFVNG+  G+
Sbjct: 590 EF--EPQVSPNATKVFVNGVWVGV 611



 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/100 (42%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 771 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQAAMGKQAMGVFLTN 816

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R++T+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 817 FDQRMETMANILYYPQKPLATTRSMEFLKFRELPAGQNSI 856



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 44/78 (56%), Gaps = 2/78 (2%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMV-LALSDPDMLDDRDYYGNKRLELAG 514
           ARD +    + HI         KA +L  M+ R++  AL   D +DDRD++G KRL+LAG
Sbjct: 374 ARDIIQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRD-VDDRDHFGKKRLDLAG 432

Query: 515 SLLSLMFEDVFKRFNSEL 532
            LL+ +F  +F R   +L
Sbjct: 433 PLLANLFRILFMRVTKDL 450



 Score = 42.0 bits (97), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 9/62 (14%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSD---------VDPLFYL 164
           D W ++ SF + KGLV   +DSFD FI+  +++L++    +  D         +DP+   
Sbjct: 24  DCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTLAPSEDEIDPVVLR 83

Query: 165 KY 166
           +Y
Sbjct: 84  RY 85


>gi|300394696|gb|ADK11886.1| DNA-directed RNA polymerase II subunit two, partial [Aphanobasidium
            pseudotsugae]
          Length = 643

 Score =  217 bits (553), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 107/263 (40%), Positives = 162/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 342  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKF 401

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+M YSGY+ ED++IMN++S+DRG  R L YR+   + K+   Q  +  
Sbjct: 402  RELPAGQNAIVAIMCYSGYNQEDSVIMNQSSIDRGLFRSLYYRSYMDLEKKSGIQQLEEF 461

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS-AISMATPEY-- 1090
              P  E   R     +  ++ DG++APG  +    +++ K+ P    S  +   T  +  
Sbjct: 462  EKPTRETTLRMKHGSYDKIEDDGLIAPGTNVNGEDIIIGKTAPIPPDSEELGQRTRSHTR 521

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ +R TR P+ GDKF+SRHGQKG IG+  
Sbjct: 522  RDVSTPLKSTEKGMVDQVLITTNSEGQKFVKVRVRSTRIPQTGDKFASRHGQKGTIGITY 581

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDI++NPH +
Sbjct: 582  RQEDMPFTAEGIVPDIVINPHAI 604



 Score =  119 bits (297), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 53/113 (46%), Positives = 74/113 (65%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++NSE    +K+ +R TR P+ GDKF+SRHGQKG IG+  
Sbjct: 522  RDVSTPLKSTEKGMVDQVLITTNSEGQKFVKVRVRSTRIPQTGDKFASRHGQKGTIGITY 581

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAF 1295
             QEDMPF   GI PDI++NPH  PSRMT+G L+E L  K   + GN  + T F
Sbjct: 582  RQEDMPFTAEGIVPDIVINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPF 634



 Score =  112 bits (280), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 59/152 (38%), Positives = 92/152 (60%), Gaps = 6/152 (3%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 36  EFNLALAVKHQTITNGLKYSLATGNWGDQKKMMSSKAGVSQVLNRYTYASTLSHLRRCNT 95

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  S WGM+CP++TPEG+ACGLVKNLALM+ I+  +    +L+ +  
Sbjct: 96  PLGREGKIAKPRQLHNSHWGMVCPAETPEGQACGLVKNLALMSCISVGSPSGPILEFLEE 155

Query: 304 IGIEHIAMFNGEELSSPGVYL-VFVNGILAGI 334
            G+E +     E   S   Y  VF+NG+  G+
Sbjct: 156 WGLETLE----ENAHSTTPYTKVFLNGVWMGV 183



 Score = 87.4 bits (215), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 44/109 (40%), Positives = 61/109 (55%), Gaps = 14/109 (12%)

Query: 718 ESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGK 777
           ++G      TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGK
Sbjct: 317 KAGTNTHTWTHCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGK 362

Query: 778 QAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
           QAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 363 QAMGVFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAI 411


>gi|119489058|ref|XP_001262829.1| DNA-dependent RNA polymerase II RPB140 [Neosartorya fischeri NRRL
            181]
 gi|119410987|gb|EAW20932.1| DNA-dependent RNA polymerase II RPB140 [Neosartorya fischeri NRRL
            181]
          Length = 1255

 Score =  217 bits (553), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 109/266 (40%), Positives = 166/266 (62%), Gaps = 9/266 (3%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R++T+   L Y Q+P+  ++++    F
Sbjct: 784  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSMEFLRF 843

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR      K       +R 
Sbjct: 844  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDTEKMVGLTVVERF 903

Query: 1034 LGPLLEADT---RKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAISMATPE 1089
              P + +DT   RK  Y    LD+DGI+APG ++    +++ K+ P       +   T  
Sbjct: 904  EKP-MRSDTIGMRKGTYDK--LDEDGIIAPGVRVSGEDIIIGKTAPLAPEAEELGQRTKA 960

Query: 1090 YKEVPVS--YKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
            + ++ VS   + +    +++VLVS++++D   +K+ +R T+ P+IGDKF+SRHGQKG IG
Sbjct: 961  HTKLDVSTPLRSTENGIVDQVLVSTSNDDLKFVKVRMRTTKVPQIGDKFASRHGQKGTIG 1020

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            +   QEDMPF   G+ PD+I+NPH +
Sbjct: 1021 ITYRQEDMPFTREGVSPDLIINPHAI 1046



 Score =  182 bits (461), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 83/176 (47%), Positives = 116/176 (65%)

Query: 1197 LEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICP 1256
            +++VLVS++++D   +K+ +R T+ P+IGDKF+SRHGQKG IG+   QEDMPF   G+ P
Sbjct: 978  VDQVLVSTSNDDLKFVKVRMRTTKVPQIGDKFASRHGQKGTIGITYRQEDMPFTREGVSP 1037

Query: 1257 DIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQG 1316
            D+I+NPH  PSRMT+  LIE    K   + G   + T F    +  +   L  HGY  +G
Sbjct: 1038 DLIINPHAIPSRMTIAHLIECQLSKVSALRGFEGDATPFTDVTVDSISRLLREHGYQSRG 1097

Query: 1317 KDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
             ++ Y+G TG  L A ++ GP YYQ+L+HMV DKIHAR+RGP  +LTRQP   R +
Sbjct: 1098 FEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRAR 1153



 Score =  112 bits (281), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 56/144 (38%), Positives = 85/144 (59%), Gaps = 3/144 (2%)

Query: 192 MRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRK 250
           ++  T+T  L  A+ TGNW   ++    + GV+QVLSR +Y S L  + R N+   +  K
Sbjct: 469 IKASTLTGGLKYALATGNWGEQKKAASSKAGVSQVLSRYTYASTLSHLRRTNTPIGRDGK 528

Query: 251 VSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIA 310
           ++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT     + ++  M    +E + 
Sbjct: 529 IAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLE 588

Query: 311 MFNGEELSSPGVYLVFVNGILAGI 334
            F  E   +P    VFVNG+  G+
Sbjct: 589 EF--EPQVTPNATKVFVNGVWVGV 610



 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LGVCA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 768 THCEIHPSMILGVCASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 813

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R++T+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 814 FDQRMETMANILYYPQKPLATTRSMEFLRFRELPAGQNAI 853



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 56/115 (48%), Gaps = 16/115 (13%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMV-LALSDPDMLDDRDYYGNKRLELAG 514
           AR+ +    + HI         KA +L  M+ R++  AL   D +DDRD++G KRL+LAG
Sbjct: 373 AREIMQKELLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRD-VDDRDHFGKKRLDLAG 431

Query: 515 SLLSLMFEDVFKRFNSELK-------ETNLSGVVN-------LVSGWWFELKYGN 555
            LL+ +F  +F R   +L+       ETN    +N       L  G  + L  GN
Sbjct: 432 PLLANLFRVLFTRVTRDLQRYVQRCVETNREIYLNIGIKASTLTGGLKYALATGN 486


>gi|88601066|gb|ABD46529.1| RNA polymerase II second largest subunit, partial [Tulasnella violea]
          Length = 676

 Score =  217 bits (553), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 104/263 (39%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DT+   L Y Q+P+  ++++    F
Sbjct: 339  IIPFPDHNQSPRNTYQSAMGKQAMGIFLTNYQIRVDTMSNILYYPQKPLATTRSMEYLKF 398

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   V K+    + +  
Sbjct: 399  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSVDRGLFRSMYYRSYMDVEKKSGAVSVEEF 458

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 459  EKPTRDTTLRMKHGTYDKLEDDGLIAPGTGVSGEDIIIGKTAPIPPDSEELGQRTQTHTK 518

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++N E    +K+ +R TR P++GDKF+SRHGQKG +G+  
Sbjct: 519  RDVSTPLKSTENGIIDQVLLTTNGEGLKFVKIRVRSTRIPQVGDKFASRHGQKGTVGITY 578

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDI++NPH +
Sbjct: 579  RQEDMPFTAEGITPDIVINPHAI 601



 Score =  145 bits (367), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 67/158 (42%), Positives = 97/158 (61%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++N E    +K+ +R TR P++GDKF+SRHGQKG +G+  
Sbjct: 519  RDVSTPLKSTENGIIDQVLLTTNGEGLKFVKIRVRSTRIPQVGDKFASRHGQKGTVGITY 578

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDI++NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 579  RQEDMPFTAEGITPDIVINPHAIPSRMTIGHLVECLLSKLATLLGNEGDATPFTDLTVES 638

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYY 1340
            V   L   GY  +G ++ Y G TG+ L+A +Y GP YY
Sbjct: 639  VSHLLKARGYQSRGLEVMYHGHTGKKLQAQVYLGPTYY 676



 Score =  108 bits (270), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/187 (33%), Positives = 98/187 (52%), Gaps = 13/187 (6%)

Query: 186 FDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINSQ 244
           F +   ++  TIT  L  ++ TGNW  ++  M  + GV+QVL+R ++ S L  + R N+ 
Sbjct: 40  FTLGAAVKNTTITQGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTFASTLSHLRRCNTP 99

Query: 245 FEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNI 304
             +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM+ I+       +++ +   
Sbjct: 100 LGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGTLSAPIIEFLQEW 159

Query: 305 GIEHIAMFNGEELSSPGVYLVFVNGILAGITCHHKEVC--------KPEIEESFNYTRQT 356
            IE +     E  +  G   VFVNG+  G+    +E+         K +I    +  R  
Sbjct: 160 DIEPLE----EHANGSGATKVFVNGVWVGVHRDAQELVMTLRRLRRKDDISAEVSIVRDI 215

Query: 357 TPHECRL 363
              E RL
Sbjct: 216 RERELRL 222



 Score = 90.5 bits (223), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 44/100 (44%), Positives = 59/100 (59%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 323 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGIFLTN 368

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
            Q R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 369 YQIRVDTMSNILYYPQKPLATTRSMEYLKFRELPAGQNAI 408


>gi|94410936|gb|ABF18586.1| RNA polymerase II second largest subunit, partial [Camarophyllopsis
            hymenocephala]
          Length = 696

 Score =  217 bits (552), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 107/263 (40%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 352  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKF 411

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 412  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEF 471

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 472  EKPTRDTTLRMKHGTYDKLEDDGLIAPGTGVAGEDIIIGKTAPIPPDSEELGQRTRTHTR 531

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 532  RDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITY 591

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 592  RQEDMPFTAEGIVPDIIINPHAI 614



 Score =  162 bits (409), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 77/165 (46%), Positives = 105/165 (63%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 532  RDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITY 591

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 592  RQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTELTVES 651

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMV 1347
            V   L + GY  +G ++ Y G TG  L+A +Y GP YYQ+LKHMV
Sbjct: 652  VSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMV 696



 Score =  110 bits (276), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 92/151 (60%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 46  EFNLSLAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT 105

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM  I+  +    +++ +  
Sbjct: 106 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEE 165

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E  ++      S+P    VFVNG+  G+
Sbjct: 166 WGLE--SLEENAHSSTPCTK-VFVNGVWMGV 193



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/177 (33%), Positives = 88/177 (49%), Gaps = 22/177 (12%)

Query: 706 VNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQ 765
            N+G     A  + GI     TH EI P  +LG+CA I              +P+P HNQ
Sbjct: 315 ANDGEFDPAARLKVGIDAHTWTHCEIHPSMILGICASI--------------IPFPDHNQ 360

Query: 766 APRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQ 825
           +PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  
Sbjct: 361 SPRNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNA 420

Query: 826 ISPGGAEELTARESCHEVLKIISFSISVAVFDSVWLG-----DVKQGVHQLSEEKEP 877
           I    A    +  +  + + +   SI   +F S++       + K GV QL E ++P
Sbjct: 421 IV---AILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKP 474



 Score = 42.7 bits (99), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 14/70 (20%)

Query: 500 DDRDYYGNKRLELAGSLLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVS 545
           DDRD++G KRL+LAG LL+ +F  +F++   ++           KE NLS  V    + +
Sbjct: 1   DDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLSLAVKHQTITN 60

Query: 546 GWWFELKYGN 555
           G  + L  GN
Sbjct: 61  GLKYSLATGN 70


>gi|55273991|gb|AAV48866.1| RNA polymerase II second largest subunit [Ampulloclitocybe clavipes]
          Length = 654

 Score =  217 bits (552), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 107/263 (40%), Positives = 162/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 349  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKF 408

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 409  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEF 468

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P+ +   R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 469  EKPVRDNTLRMKHGTYDKLEDDGLIAPGTGVAGEDIIIGKTAPIPPDSEELGQRTRTHTR 528

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 529  RDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITY 588

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 589  RQEDMPFTAEGIVPDIIINPHAI 611



 Score =  121 bits (304), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 57/126 (45%), Positives = 79/126 (62%)

Query: 1178 RITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV 1237
            R    ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG 
Sbjct: 524  RTHTRRDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGT 583

Query: 1238 IGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGG 1297
            IG+   QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F  
Sbjct: 584  IGITYRQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTD 643

Query: 1298 TKLVDV 1303
             ++  V
Sbjct: 644  LRVESV 649



 Score =  112 bits (279), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 93/151 (61%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKM-ERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 43  EFNLALAVKHQTITNGLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNT 102

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM+ I+  +    +++ +  
Sbjct: 103 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSYSAPVIEFLEE 162

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E  ++      S+P    VFVNG+  G+
Sbjct: 163 WGLE--SLEENAHSSTPCTK-VFVNGVWMGV 190



 Score = 87.8 bits (216), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 47/121 (38%), Positives = 65/121 (53%), Gaps = 14/121 (11%)

Query: 706 VNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQ 765
            N+G     A  ++G      TH EI P  +LG+CA I              +P+P HNQ
Sbjct: 312 ANDGEFDPPARLKAGTHAHTWTHCEIHPSMILGICASI--------------IPFPDHNQ 357

Query: 766 APRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQ 825
           +PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  
Sbjct: 358 SPRNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNA 417

Query: 826 I 826
           I
Sbjct: 418 I 418


>gi|258562136|gb|ACV81790.1| RNA polymerase II second largest subunit [Termitomyces poonensis]
          Length = 664

 Score =  217 bits (552), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 107/263 (40%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 317  IIPFPDHNQSPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKF 376

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 377  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEF 436

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 437  EKPSRDNTLRMKHGTYDKLEDDGLIAPGTGVAGEDIIIGKTAPIPPESEELGQRTRTHTR 496

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 497  RDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITY 556

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 557  RQEDMPFTSEGIVPDIIINPHAI 579



 Score =  168 bits (425), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 79/168 (47%), Positives = 107/168 (63%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 497  RDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITY 556

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 557  RQEDMPFTSEGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVES 616

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDK 1350
            V   L + GY  +G ++ Y G TG  L+A +Y GP YYQ+LKHMV DK
Sbjct: 617  VSTFLXQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMVDDK 664



 Score =  112 bits (279), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 93/151 (61%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 12  EFNLALAVKHQTITNGLKYSLATGNWGDQKKSMSAKAGVSQVLNRYTYASTLSHLRRCNT 71

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM+ I+  +    +++ +  
Sbjct: 72  PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSYSAPVIEFLEE 131

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E  ++      S+P    VFVNG+  G+
Sbjct: 132 WGLE--SLEENAHSSTPCTK-VFVNGVWMGV 159



 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/121 (41%), Positives = 67/121 (55%), Gaps = 15/121 (12%)

Query: 706 VNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQ 765
           VNE  D   A  ++GI     TH EI P  +LG+CA I              +P+P HNQ
Sbjct: 281 VNEDFDP-AARLKAGINSHTWTHCEIHPSMILGICASI--------------IPFPDHNQ 325

Query: 766 APRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQ 825
           +PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  
Sbjct: 326 SPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNA 385

Query: 826 I 826
           I
Sbjct: 386 I 386


>gi|170084317|ref|XP_001873382.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164650934|gb|EDR15174.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 942

 Score =  217 bits (552), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 107/263 (40%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 532  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKF 591

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 592  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEF 651

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  E   R     +  ++ DG++APG  +    +++ K+ P    S        T   
Sbjct: 652  EKPTRENTLRMKHGTYDKIEDDGLIAPGTGVAGEDIIIGKTAPIPPDSEELGQRTQTHTR 711

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 712  RDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITY 771

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 772  RQEDMPFTAEGIVPDIIINPHAI 794



 Score =  191 bits (486), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 91/188 (48%), Positives = 122/188 (64%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 712  RDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITY 771

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 772  RQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVES 831

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
            V   L + GY  +G ++ Y G TG  L+A +Y GP YYQ+LKHMV DKIH+R+RGP  +L
Sbjct: 832  VSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMVDDKIHSRARGPVQIL 891

Query: 1363 TRQPTGRR 1370
            TRQP   R
Sbjct: 892  TRQPVEGR 899



 Score =  111 bits (278), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 92/151 (60%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 226 EFNLALAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT 285

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM  I+  +    +++ +  
Sbjct: 286 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEE 345

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E  ++      S+P    VFVNG+  G+
Sbjct: 346 WGLE--SLEENAHSSTPCTK-VFVNGVWMGV 373



 Score = 90.5 bits (223), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 60/179 (33%), Positives = 89/179 (49%), Gaps = 22/179 (12%)

Query: 704 LDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHH 763
           L  N+G     A  ++G      TH EI P  +LG+CA I              +P+P H
Sbjct: 493 LHANDGEFDPAARLKAGTHAHTWTHCEIHPSMILGICASI--------------IPFPDH 538

Query: 764 NQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
           NQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+
Sbjct: 539 NQSPRNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQ 598

Query: 824 CQISPGGAEELTARESCHEVLKIISFSISVAVFDSVWLG-----DVKQGVHQLSEEKEP 877
             I    A    +  +  + + +   SI   +F S++       + K GV QL E ++P
Sbjct: 599 NAIV---AILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKP 654



 Score = 58.5 bits (140), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 14/114 (12%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A++ L    + H+ +       KA +   MI R++LA  +   LDDRD++G KRL+LAG 
Sbjct: 137 AQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAALERRELDDRDHFGKKRLDLAGP 196

Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYGN 555
           LL+ +F  +F++   ++           KE NL+  V    + +G  + L  GN
Sbjct: 197 LLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLALAVKHQTITNGLKYSLATGN 250


>gi|103001231|gb|ABF71498.1| DNA-dependent RNA polymerase II second largest subunit [Acarospora
            scabrida]
          Length = 713

 Score =  217 bits (552), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 107/264 (40%), Positives = 167/264 (63%), Gaps = 5/264 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 363  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDQRMDTMANILYYPQKPLATTRSMEFLKF 422

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR+     K+      ++ 
Sbjct: 423  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSVVEQF 482

Query: 1034 LGPLLEADTRKPVY-RHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAISMATPEY- 1090
              P + +DT K  +  +  LD+DGIVAPG ++    +++ K+ P       +   T  + 
Sbjct: 483  EKP-MRSDTLKLKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKLHV 541

Query: 1091 -KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             ++V    + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHGQKG IG+ 
Sbjct: 542  KRDVSTPLRSTENGIVDQVLITTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGIT 601

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
              QEDMPF + GI PD+I+NPH +
Sbjct: 602  YRQEDMPFTKEGIVPDLIINPHAI 625



 Score =  160 bits (404), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 87/240 (36%), Positives = 134/240 (55%), Gaps = 13/240 (5%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESG-ICPDIIMNPHGL 1173
            ++ Q  +P   D    +HG      + G++  G+ V  ED+   ++  I PD       L
Sbjct: 478  VVEQFEKPMRSDTLKLKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAPIAPD----AEEL 533

Query: 1174 KGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
                ++   ++V    + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHG
Sbjct: 534  GQRTKLHVKRDVSTPLRSTENGIVDQVLITTNAEGLRFVKVRMRTTKIPQIGDKFASRHG 593

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGT 1293
            QKG IG+   QEDMPF + GI PD+I+NPH  PSRMT+  LIE    K   + G   + T
Sbjct: 594  QKGTIGITYRQEDMPFTKEGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDAT 653

Query: 1294 AFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHA 1353
             F    +  V + L  HGY  +G ++ Y+G TG  L A ++ GP YYQ+L+HMV  KI A
Sbjct: 654  PFTEVTVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDXKIXA 713



 Score =  114 bits (286), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 91/151 (60%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW   ++    + GV+QVL+R ++ S L  + R N+
Sbjct: 40  EFNLTLGVKSTTITNGLKYSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNT 99

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT     + +++ M  
Sbjct: 100 PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIEFMIQ 159

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
             +E +  +  E   SP    VFVNG+  G+
Sbjct: 160 RNMEVLEEY--EPQRSPNATKVFVNGVWVGV 188



 Score = 90.1 bits (222), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 347 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 392

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 393 YDQRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 432


>gi|86559353|gb|ABD04084.1| RNA polymerase II second largest subunit, partial [Cantharellus
            cibarius]
          Length = 649

 Score =  217 bits (552), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 103/263 (39%), Positives = 162/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DT+   L Y Q+P+  ++++    F
Sbjct: 351  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFQVRMDTMANILYYPQKPLATTRSMEYLRF 410

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNAT+A++ YSGY+ ED++IMN++S+DRG  R + YR+     K+    T +  
Sbjct: 411  RELPAGQNATVAILCYSGYNQEDSVIMNQSSIDRGLFRSMYYRSYTDTEKKAGLLTLEEF 470

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  L+ DG++APG  +    +++ K+ P    S      + T   
Sbjct: 471  EKPTRDTTLRMKHGTYEKLEDDGLIAPGTGVVGEDIIIGKTAPLPPDSEELGQRLRTHTR 530

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++N+E    +K+ +R TR P++GDKF+SRHGQKG +G+  
Sbjct: 531  RDVSTPLKSTENGIVDQVLITTNAEGLKFVKIRIRATRVPQVGDKFASRHGQKGTVGITY 590

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
              EDMPF   GI PD+++NPH +
Sbjct: 591  RHEDMPFTAEGITPDLVINPHAI 613



 Score =  116 bits (290), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 51/118 (43%), Positives = 75/118 (63%)

Query: 1178 RITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV 1237
            R    ++V    K +    +++VL+++N+E    +K+ +R TR P++GDKF+SRHGQKG 
Sbjct: 526  RTHTRRDVSTPLKSTENGIVDQVLITTNAEGLKFVKIRIRATRVPQVGDKFASRHGQKGT 585

Query: 1238 IGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAF 1295
            +G+    EDMPF   GI PD+++NPH  PSRMT+G LIE L  K   + GN  + T F
Sbjct: 586  VGITYRHEDMPFTAEGITPDLVINPHAIPSRMTIGHLIECLLSKLATLIGNEGDATPF 643



 Score =  108 bits (270), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/238 (31%), Positives = 123/238 (51%), Gaps = 29/238 (12%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F I   ++  TITN    ++ TGNW  ++  M  + GV+QVL+R ++ S L  + R N+
Sbjct: 46  EFTIGQAVKPSTITNGXKYSLATGNWGDQKKAMSSKAGVSQVLNRXTFASTLSHLRRCNT 105

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNL+LM  I+  +    +++ +  
Sbjct: 106 PLGRDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMACISVGSISAPVIEFLQE 165

Query: 304 IGIEHIAMFNGEELSSPG-VYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHECR 362
            G+E +     EE S+ G    VFVNG+  G+   H++   P + ++    R       R
Sbjct: 166 WGLESL-----EENSAHGNATKVFVNGVWLGV---HRDA--PNLVKTLRRLR-------R 208

Query: 363 LRDLTYSAPITVDIE------YTRGSQRVVRSDLVIGRMPIMLQS---SKCVLRNKTE 411
             D++    I  DI       YT    RV R   ++    +ML+    +K   RN T+
Sbjct: 209 KDDISSEVSIVRDIRERELRLYTDAG-RVCRPLFIVEDQQLMLKKEHINKLNDRNATQ 265



 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/164 (34%), Positives = 80/164 (48%), Gaps = 45/164 (27%)

Query: 691 RFDDFLYEGKIEYLDVNE-----------------------GNDSHIAVSE----SGIRP 723
           ++ D + +G IE LD  E                       G  S++  S+    + IR 
Sbjct: 268 KWSDLVRDGVIELLDAEEEETVMICMTPDDLENSRTNAATAGYVSNVGASDHDVAARIRS 327

Query: 724 GVT----THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQA 779
            +T    TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQA
Sbjct: 328 TMTAHTWTHCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQA 373

Query: 780 MGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
           MG    N Q R+DT+   L Y Q+P+  ++++    F +LPAG+
Sbjct: 374 MGIYLTNFQVRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQ 417


>gi|115385276|ref|XP_001209185.1| DNA-directed RNA polymerase II 138 kDa polypeptide [Aspergillus
            terreus NIH2624]
 gi|114196877|gb|EAU38577.1| DNA-directed RNA polymerase II 138 kDa polypeptide [Aspergillus
            terreus NIH2624]
          Length = 1256

 Score =  217 bits (552), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 109/266 (40%), Positives = 166/266 (62%), Gaps = 9/266 (3%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R++T+   L Y Q+P+  ++++    F
Sbjct: 785  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDQRMETMANLLYYPQKPLATTRSMEFLRF 844

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR      K       +R 
Sbjct: 845  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMVGLTVVERF 904

Query: 1034 LGPLLEADT---RKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAISMATPE 1089
              P + +DT   RK  Y    LD+DGI+APG ++    +++ K+ P       +   T  
Sbjct: 905  EKP-MRSDTIGMRKGTYDK--LDEDGIIAPGVRVSGEDIIIGKTAPLAPEAEELGQRTKA 961

Query: 1090 YKEVPVS--YKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
            + ++ VS   + +    +++VLVS++++D   +K+ +R T+ P+IGDKF+SRHGQKG IG
Sbjct: 962  HTKLDVSTPLRSTESGIVDQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIG 1021

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            +   QEDMPF   G+ PD+I+NPH +
Sbjct: 1022 ITYRQEDMPFTREGVAPDLIINPHAI 1047



 Score =  182 bits (462), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 84/189 (44%), Positives = 120/189 (63%)

Query: 1184 EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVE 1243
            +V    + +    +++VLVS++++D   +K+ +R T+ P+IGDKF+SRHGQKG IG+   
Sbjct: 966  DVSTPLRSTESGIVDQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYR 1025

Query: 1244 QEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDV 1303
            QEDMPF   G+ PD+I+NPH  PSRMT+  LIE    K   + G   + T F    +  +
Sbjct: 1026 QEDMPFTREGVAPDLIINPHAIPSRMTIAHLIECQLSKVSALRGFEGDATPFTDVTVDSI 1085

Query: 1304 QEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLT 1363
               L  HGY  +G ++ Y+G TG  L A ++ GP YYQ+L+HMV DKIHAR+RGP  +LT
Sbjct: 1086 SRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHARARGPTQILT 1145

Query: 1364 RQPTGRRWK 1372
            RQP   R +
Sbjct: 1146 RQPVEGRAR 1154



 Score =  113 bits (282), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 57/144 (39%), Positives = 85/144 (59%), Gaps = 3/144 (2%)

Query: 192 MRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRK 250
           ++  T+T  L  A+ TGNW   ++    + GV+QVLSR +Y S L  + R N+   +  K
Sbjct: 468 IKASTLTGGLKYALATGNWGEQKKAASAKAGVSQVLSRYTYASTLSHLRRTNTPIGRDGK 527

Query: 251 VSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIA 310
           ++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT     + ++  M    +E + 
Sbjct: 528 IAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLE 587

Query: 311 MFNGEELSSPGVYLVFVNGILAGI 334
            F  E   +P    VFVNG+  GI
Sbjct: 588 EF--EPQVTPNATKVFVNGVWVGI 609



 Score = 88.6 bits (218), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LGVCA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 769 THCEIHPSMILGVCASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 814

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R++T+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 815 FDQRMETMANLLYYPQKPLATTRSMEFLRFRELPAGQNAI 854



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 56/115 (48%), Gaps = 16/115 (13%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMV-LALSDPDMLDDRDYYGNKRLELAG 514
           AR+ +    + HI         KA +L  M+ R++  AL   D +DDRD++G KRL+LAG
Sbjct: 372 AREIMQKELLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRD-VDDRDHFGKKRLDLAG 430

Query: 515 SLLSLMFEDVFKRFNSELK-------ETNLSGVVN-------LVSGWWFELKYGN 555
            LL+ +F  +F R   +L+       ETN    +N       L  G  + L  GN
Sbjct: 431 PLLANLFRVLFTRVTRDLQRYVQRCVETNREIYLNIGIKASTLTGGLKYALATGN 485


>gi|78100236|gb|ABB20919.1| RNA polymerase II second largest subunit, partial [Hydnum albomagnum]
          Length = 664

 Score =  217 bits (552), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 105/263 (39%), Positives = 160/263 (60%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DT+   L Y Q+P+  ++++    F
Sbjct: 337  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNYQVRMDTMANILYYPQKPLATTRSMEYLRF 396

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNAT+A++ YSGY+ ED++IMN++S+DRG  R + YR+     K+      +  
Sbjct: 397  RELPAGQNATVAILCYSGYNQEDSVIMNQSSIDRGLFRSMYYRSYTDAEKKVGVLPLEEF 456

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  L+ DG++APG  +    +++ K+ P    S      M T   
Sbjct: 457  EKPTRDTTLRMKHGTYEKLEDDGLIAPGTGVAGEDIIIGKTAPLPPDSEELGQRMRTHTR 516

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VLV++N +    +K+ +R TR P++GDKF+SRHGQKG +G+  
Sbjct: 517  RDVSTPLKSTENGIVDQVLVTTNQDGLKFVKIRIRSTRIPQVGDKFASRHGQKGTVGITY 576

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
              EDMPF   GI PDII+NPH +
Sbjct: 577  RHEDMPFTAEGITPDIIINPHAI 599



 Score =  132 bits (333), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 62/153 (40%), Positives = 93/153 (60%)

Query: 1178 RITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV 1237
            R    ++V    K +    +++VLV++N +    +K+ +R TR P++GDKF+SRHGQKG 
Sbjct: 512  RTHTRRDVSTPLKSTENGIVDQVLVTTNQDGLKFVKIRIRSTRIPQVGDKFASRHGQKGT 571

Query: 1238 IGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGG 1297
            +G+    EDMPF   GI PDII+NPH  PSRMT+G LIE L  K   + GN  + T F  
Sbjct: 572  VGITYRHEDMPFTAEGITPDIIINPHAIPSRMTIGHLIECLLSKLATLIGNEGDATPFTE 631

Query: 1298 TKLVDVQEELIRHGYNYQGKDIFYSGITGEALE 1330
              +  V + L+++GY  +G ++ Y G +G  L+
Sbjct: 632  LTVESVSQLLLQNGYQSRGLEVMYHGHSGRKLQ 664



 Score =  108 bits (269), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/236 (30%), Positives = 121/236 (51%), Gaps = 25/236 (10%)

Query: 186 FDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINSQ 244
           F+I   ++ +TITN L  ++ TGNW  ++  M  + GV+QVL+R ++ S L  + R N+ 
Sbjct: 31  FNISIAVKSNTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTFASTLSHLRRCNTP 90

Query: 245 FEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNI 304
             +  K++ PR L  + WGM+CP++TPEG+ACGLVKNL+LM  I+  +    +++ +   
Sbjct: 91  LGRDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMACISVGSLSAPVIEFLQEW 150

Query: 305 GIEHIAMFNGEELSSPG-VYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHECRL 363
           G+E +     E  ++ G    VFVNG+  G+   H++   P + ++    R       R 
Sbjct: 151 GLESLE----ENANAHGSATKVFVNGVWMGV---HRDA--PNLVKTLRRLR-------RK 194

Query: 364 RDLTYSAPITVDIE------YTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKTEYT 413
            D++    I  DI       YT    RV R   ++    ++L+     + N    T
Sbjct: 195 DDISSEVSIVRDIREKELRLYTDAG-RVCRPLFIVENQQLLLKKEHVNMLNDKNRT 249



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/122 (39%), Positives = 67/122 (54%), Gaps = 15/122 (12%)

Query: 703 YLDVNEGNDSHIAVS-ESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYP 761
           Y+     +D  +AV   S +     TH EI P  +LG+CA I              +P+P
Sbjct: 296 YVSNAGASDHDVAVRVRSTMTAHTWTHCEIHPSMILGICASI--------------IPFP 341

Query: 762 HHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPA 821
            HNQ+PRNTYQ AMGKQAMG    N Q R+DT+   L Y Q+P+  ++++    F +LPA
Sbjct: 342 DHNQSPRNTYQSAMGKQAMGIYLTNYQVRMDTMANILYYPQKPLATTRSMEYLRFRELPA 401

Query: 822 GK 823
           G+
Sbjct: 402 GQ 403


>gi|94410942|gb|ABF18589.1| RNA polymerase II second largest subunit, partial [Inocybe mutata]
          Length = 563

 Score =  217 bits (552), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 160/263 (60%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 223  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKF 282

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 283  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEF 342

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  L+ DG +APG  +C   +++ K+ P    S        T   
Sbjct: 343  EKPTRDTTLRMKHGTYDKLEDDGFIAPGTGVCGEDIIIGKTAPIPPDSEELGQRTRTHTR 402

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ +R  R P+IGDKF+SRHGQKG IG+  
Sbjct: 403  RDVSTPLKSTEKGTVDQVLITTNSEGQKFVKVRVRSIRIPQIGDKFASRHGQKGTIGITY 462

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PD+I+NPH +
Sbjct: 463  RQEDMPFTAEGIVPDLIINPHAI 485



 Score =  150 bits (380), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 71/161 (44%), Positives = 100/161 (62%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++NSE    +K+ +R  R P+IGDKF+SRHGQKG IG+  
Sbjct: 403  RDVSTPLKSTEKGTVDQVLITTNSEGQKFVKVRVRSIRIPQIGDKFASRHGQKGTIGITY 462

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PD+I+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 463  RQEDMPFTAEGIVPDLIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVES 522

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKL 1343
            V   L + GY  +G ++ Y G TG  L+A +Y GP YYQ+L
Sbjct: 523  VSTFLRQRGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRL 563



 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/177 (33%), Positives = 88/177 (49%), Gaps = 22/177 (12%)

Query: 706 VNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQ 765
            N+G     A  ++G      TH EI P  +LG+CA I              +P+P HNQ
Sbjct: 186 ANDGEFDPAARLKAGTHAHTWTHCEIHPSMILGICASI--------------IPFPDHNQ 231

Query: 766 APRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQ 825
           +PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  
Sbjct: 232 SPRNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNA 291

Query: 826 ISPGGAEELTARESCHEVLKIISFSISVAVFDSVWLG-----DVKQGVHQLSEEKEP 877
           I    A    +  +  + + +   SI   +F S++       + K GV QL E ++P
Sbjct: 292 IV---AILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKP 345



 Score = 46.6 bits (109), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 3/67 (4%)

Query: 268 SDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMFNGEELSSPGVYLVFV 327
           ++TPEG+ACGLVKNLALM  I+  +    +++ +   G+E +        SS     VFV
Sbjct: 1   AETPEGQACGLVKNLALMACISVGSFSGPVIEFLEEWGLESL---EENAHSSTPFTKVFV 57

Query: 328 NGILAGI 334
           NG+  G+
Sbjct: 58  NGVWIGV 64


>gi|320172582|gb|ADW24174.1| RNA polymerase II second largest subunit [Gloeophyllum carbonarium]
          Length = 461

 Score =  217 bits (552), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 164/263 (62%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 130  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLRF 189

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 190  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEF 249

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS-AISMATPEY-- 1090
              P  +   R     +  L+ DG++APG  +    +++ K+ P    S  +   T  +  
Sbjct: 250  EKPTRDTTLRMKHGTYDKLEDDGLIAPGTGVNGEDIIIGKTAPIPPDSEELGQRTRSHTR 309

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V  + K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 310  RDVSTALKSTESGIVDQVLITTNSEGQKFVKVRVRSTRVPQIGDKFASRHGQKGTIGITY 369

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PD+I+NPH +
Sbjct: 370  RQEDMPFTAEGITPDVIINPHAI 392



 Score =  141 bits (356), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 67/152 (44%), Positives = 95/152 (62%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V  + K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 310  RDVSTALKSTESGIVDQVLITTNSEGQKFVKVRVRSTRVPQIGDKFASRHGQKGTIGITY 369

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PD+I+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 370  RQEDMPFTAEGITPDVIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVES 429

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIY 1334
            V   L + GY  +G ++ Y G TG  L+A IY
Sbjct: 430  VSTFLRQKGYQSRGLEVMYYGHTGRKLQAQIY 461



 Score = 88.2 bits (217), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/156 (35%), Positives = 81/156 (51%), Gaps = 22/156 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LGVCA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 114 THCEIHPSMILGVCASI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYLTN 159

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQISPGGAEELTARESCHEVLKI 846
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I    A    +  +  + + +
Sbjct: 160 FLVRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNAIV---AILCYSGYNQEDSVIM 216

Query: 847 ISFSISVAVFDSVWLG-----DVKQGVHQLSEEKEP 877
              SI   +F S++       + K GV QL E ++P
Sbjct: 217 NQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKP 252



 Score = 46.6 bits (109), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 42/69 (60%), Gaps = 1/69 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKM-ERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++ +TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 43  EFNLSLAVKHNTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT 102

Query: 244 QFEKTRKVS 252
              +  K++
Sbjct: 103 PLGREGKIA 111


>gi|304315185|ref|YP_003850332.1| DNA-directed RNA polymerase, subunit B' [Methanothermobacter
            marburgensis str. Marburg]
 gi|302588644|gb|ADL59019.1| DNA-directed RNA polymerase, subunit B' [Methanothermobacter
            marburgensis str. Marburg]
          Length = 603

 Score =  217 bits (552), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 105/264 (39%), Positives = 159/264 (60%), Gaps = 3/264 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            G++P+ +HN +PRNT +  M KQA+G    N   R DT  + L + Q P+V+++ I +T 
Sbjct: 137  GIIPFANHNSSPRNTMEAGMTKQALGLYASNYDLRTDTRAHLLHHPQVPIVKTRIIDVTG 196

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + + P+GQN  +AVMSY GY++EDALI+NKASL+RG  R   +R+ +   ++YP    DR
Sbjct: 197  YDERPSGQNFVVAVMSYEGYNMEDALILNKASLERGLARSSFFRSYEAAERRYPGGQEDR 256

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPT---ISVSAISMATPE 1089
               P       +    +R LD+DGI+ P   +    VL+ K+ P      +         
Sbjct: 257  FEIPEKGVRGYRSESDYRHLDEDGIINPEAVVSSGDVLIGKTSPPRFLEEIDEFGTVAER 316

Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             +E  V+ +      ++ VL++   E + L K+ +R+ R+PE+GDKF+SRHGQKGV+GLI
Sbjct: 317  RRETSVTVRHGEKGIVDAVLLTETVEGSRLAKIRVREQRQPELGDKFASRHGQKGVVGLI 376

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
            V QEDMPF E G+ PD+I+NPH +
Sbjct: 377  VSQEDMPFTEDGVVPDLIVNPHAI 400



 Score =  204 bits (519), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 109/247 (44%), Positives = 153/247 (61%), Gaps = 16/247 (6%)

Query: 1142 QKGVIGLIVEQEDMPFNESGIC-PDIIMN-----------PHGLKGCDRI----TEYKEV 1185
            +KGV G   E +    +E GI  P+ +++           P  L+  D         +E 
Sbjct: 261  EKGVRGYRSESDYRHLDEDGIINPEAVVSSGDVLIGKTSPPRFLEEIDEFGTVAERRRET 320

Query: 1186 PVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQE 1245
             V+ +      ++ VL++   E + L K+ +R+ R+PE+GDKF+SRHGQKGV+GLIV QE
Sbjct: 321  SVTVRHGEKGIVDAVLLTETVEGSRLAKIRVREQRQPELGDKFASRHGQKGVVGLIVSQE 380

Query: 1246 DMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQE 1305
            DMPF E G+ PD+I+NPH  PSRM+VG+++E+LAGKA  MEG   +GT F G    D+++
Sbjct: 381  DMPFTEDGVVPDLIVNPHAIPSRMSVGQVLEMLAGKAACMEGRRVDGTPFTGEDERDIKK 440

Query: 1306 ELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQ 1365
             L  +G+   G +  Y+GITGE +EA I+ G  YYQKL HM  DK++ARSRGP  VLTRQ
Sbjct: 441  ALRANGFESAGVESLYNGITGERIEAEIFIGVAYYQKLHHMTTDKVYARSRGPVQVLTRQ 500

Query: 1366 PTGRRWK 1372
            PT  R +
Sbjct: 501  PTEGRAR 507



 Score = 96.3 bits (238), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/136 (37%), Positives = 77/136 (56%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G   +DD + EG IEYLD  E  +++IA+S   +     THLEI P T+LG+CAGI    
Sbjct: 84  GEMEWDDLINEGIIEYLDAEEEENAYIAMSPEDL-TDEHTHLEIDPSTMLGICAGI---- 138

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                     +P+ +HN +PRNT +  M KQA+G    N   R DT  + L + Q P+V+
Sbjct: 139 ----------IPFANHNSSPRNTMEAGMTKQALGLYASNYDLRTDTRAHLLHHPQVPIVK 188

Query: 808 SKTIRITNFHKLPAGK 823
           ++ I +T + + P+G+
Sbjct: 189 TRIIDVTGYDERPSGQ 204


>gi|357216613|gb|AET71040.1| RNA polymerase II second largest subunit, partial [Trametes
            conchifer]
          Length = 679

 Score =  217 bits (552), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 162/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 351  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKF 410

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 411  RELPAGQNAVVAILCYSGYNQEDSVIMNQSSIDRGLFRSMYYRSYMDLEKKSGIQQLEEF 470

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  ++  R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 471  EKPTRDSTLRMKHGTYDKLEDDGLIAPGTNVNGEDIIIGKTAPIPPDSEELGQRTRTHTK 530

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++N+E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 531  RDVSTPLKSTEQGIIDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 590

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 591  RQEDMPFTAEGITPDIIINPHAI 613



 Score =  137 bits (345), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 65/149 (43%), Positives = 93/149 (62%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++N+E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 531  RDVSTPLKSTEQGIIDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 590

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 591  RQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVES 650

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEA 1331
            V + L + GY  +G +I Y G TG  ++A
Sbjct: 651  VSQFLRQKGYQSRGLEIMYHGHTGRKIQA 679



 Score =  109 bits (272), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 93/151 (61%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F +   ++ +TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 40  EFQLGLAVKHNTITNGLKYSLATGNWGDQKKTMSSKAGVSQVLNRYTYASTLSHLRRCNT 99

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNL+LM+ I+  +    +++ +  
Sbjct: 100 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSCISVGSLSAPVIEFLEE 159

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E  ++      S+P    VFVNG+  G+
Sbjct: 160 WGLE--SLEENAHSSTPCTK-VFVNGVWMGV 187



 Score = 87.4 bits (215), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 75/162 (46%), Gaps = 43/162 (26%)

Query: 691 RFDDFLYEGKIEYLDVNEGNDSHIAVS----------ESGIRPGVT-------------- 726
           ++D+ + +G IE LD  E     I ++            GI P                 
Sbjct: 270 KWDNLIKDGVIELLDAEEEETVMICMTPEDLENSRLQSEGIDPHANDGELDPSARLKAPT 329

Query: 727 -----THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMG 781
                TH EI P  +LGVCA I              +P+P HNQ+PRNTYQ AMGKQAMG
Sbjct: 330 NAHTWTHCEIHPSMILGVCASI--------------IPFPDHNQSPRNTYQSAMGKQAMG 375

Query: 782 CIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
               N   R+DT+   L Y Q+P+  ++++    F +LPAG+
Sbjct: 376 IYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQ 417


>gi|94410902|gb|ABF18572.1| RNA polymerase II second largest subunit, partial [Agrocybe erebia]
          Length = 641

 Score =  217 bits (552), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 107/263 (40%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 350  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKF 409

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 410  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEF 469

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  E   R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 470  EKPTRENTLRLKHGTYDKLEDDGLIAPGTGVAGEDIIIGKTAPIPPDSEELGQRTRTHTR 529

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 530  RDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITY 589

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PD+I+NPH +
Sbjct: 590  RQEDMPFTAEGIVPDLIINPHAI 612



 Score =  117 bits (292), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 55/112 (49%), Positives = 75/112 (66%), Gaps = 2/112 (1%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 530  RDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITY 589

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTA 1294
             QEDMPF   GI PD+I+NPH  PSRMT+G L+E L  K   + G  KEG A
Sbjct: 590  RQEDMPFTAEGIVPDLIINPHAIPSRMTIGHLVECLLSKGATLIG--KEGDA 639



 Score =  112 bits (281), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 90/151 (59%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 40  EFNLALAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT 99

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM+ I+       +++ +  
Sbjct: 100 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGTISAPVIEFLEE 159

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E +        SS     VFVNG+  G+
Sbjct: 160 WGLESL---EENAHSSTAFTKVFVNGVWIGV 187



 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 334 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYLTN 379

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 380 FLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAI 419


>gi|300394698|gb|ADK11887.1| DNA-directed RNA polymerase II subunit two, partial [Ceraceomyces
            borealis]
          Length = 693

 Score =  217 bits (552), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 107/263 (40%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 350  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKF 409

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 410  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEF 469

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  E   R     +  ++ DG++APG  +    +++ K+ P    S        T   
Sbjct: 470  EKPTRENTLRMKHGTYDKIEDDGLIAPGTGVAGEDIIIGKTAPIPPDSEELGQRTRTHTR 529

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 530  RDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITY 589

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 590  RQEDMPFTAEGIVPDIIINPHAI 612



 Score =  163 bits (413), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 76/164 (46%), Positives = 106/164 (64%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 530  RDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITY 589

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 590  RQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLLGNEGDATPFTDLTVES 649

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHM 1346
            V + L++ GY  +G ++ Y G TG  L+A +Y GP YYQ+LKHM
Sbjct: 650  VSKFLLQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHM 693



 Score =  111 bits (278), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 93/151 (61%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 43  EFNLSLAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT 102

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM+ I+  +    +++ +  
Sbjct: 103 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSYSAPVIEFLEE 162

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E  ++      S+P    VFVNG+  G+
Sbjct: 163 WGLE--SLEENAHSSTPCTK-VFVNGVWMGV 190



 Score = 86.7 bits (213), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 84/165 (50%), Gaps = 22/165 (13%)

Query: 718 ESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGK 777
           ++G      TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGK
Sbjct: 325 KAGTNAHTWTHCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGK 370

Query: 778 QAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQISPGGAEELTAR 837
           QAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  I    A    + 
Sbjct: 371 QAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIV---AILCYSG 427

Query: 838 ESCHEVLKIISFSISVAVFDSVWLG-----DVKQGVHQLSEEKEP 877
            +  + + +   SI   +F S++       + K G+ QL E ++P
Sbjct: 428 YNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEFEKP 472


>gi|119644045|gb|ABL85603.1| RNA polymerase II second largest subunit [Hypotrachyna caraccensis]
          Length = 708

 Score =  217 bits (552), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 110/267 (41%), Positives = 168/267 (62%), Gaps = 11/267 (4%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG   YN + R+DT+   L Y Q+P+  ++++    F
Sbjct: 370  IIPFPDHNQSPRNTYQSAMGKQAMGXXSYNYEQRMDTMANILYYPQKPLATTRSMEFLKF 429

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR      K+      ++ 
Sbjct: 430  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQEKRIGMSVVEQF 489

Query: 1034 LGPLLEADTRKPVY-RHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKE 1092
              P + +DT K  +  +  LD DG+VAPG ++    +++ K+ P I+  A  +   +  +
Sbjct: 490  EKP-MRSDTLKLKHGTYDKLDDDGLVAPGVRVSGEDIIIGKTAP-IAPDAEELG--QRTK 545

Query: 1093 VPVSYKGSVP------SYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVI 1146
            + V    S P        +++VL+S+N+E    +K+ +R T+ P+IGDKF+SRHGQKG I
Sbjct: 546  LHVKRDTSTPLRSTENGIVDQVLLSTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTI 605

Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G+   QEDMPF   G+ PD+I+NPH +
Sbjct: 606  GITYRQEDMPFTSEGMVPDLIINPHAI 632



 Score =  142 bits (357), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 80/228 (35%), Positives = 121/228 (53%), Gaps = 13/228 (5%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESG-ICPDIIMNPHGL 1173
            ++ Q  +P   D    +HG        G++  G+ V  ED+   ++  I PD       L
Sbjct: 485  VVEQFEKPMRSDTLKLKHGTYDKLDDDGLVAPGVRVSGEDIIIGKTAPIAPDA----EEL 540

Query: 1174 KGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
                ++   ++     + +    +++VL+S+N+E    +K+ +R T+ P+IGDKF+SRHG
Sbjct: 541  GQRTKLHVKRDTSTPLRSTENGIVDQVLLSTNAEGLRFVKVRMRTTKIPQIGDKFASRHG 600

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGT 1293
            QKG IG+   QEDMPF   G+ PD+I+NPH  PSRMT+  LIE L  K   + G   + T
Sbjct: 601  QKGTIGITYRQEDMPFTSEGMVPDLIINPHAIPSRMTIAHLIECLLSKVSSLRGFEGDAT 660

Query: 1294 AFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQ 1341
             F    +  V   L  HGY  +G ++ Y+G TG  L   I+ GP YYQ
Sbjct: 661  PFTEVTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVTQIFLGPTYYQ 708



 Score =  112 bits (279), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 91/151 (60%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++   +TN L  ++ TGNW  ++     + GV+QVL+R ++ S L  + R N+
Sbjct: 46  EFNMTLAVKSTHLTNGLRYSLATGNWGDQKKAASVKAGVSQVLNRYTFASTLSHLRRTNT 105

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT     + ++  M  
Sbjct: 106 PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIVDFMIQ 165

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
             +E +  +  E L+SP    +FVNG+  G+
Sbjct: 166 RNMEVLEEY--EPLNSPNATKIFVNGVWVGV 194



 Score = 94.7 bits (234), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 44/100 (44%), Positives = 60/100 (60%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG   YN
Sbjct: 354 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGXXSYN 399

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
            + R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 400 YEQRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 439



 Score = 42.0 bits (97), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 14/70 (20%)

Query: 500 DDRDYYGNKRLELAGSLLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVS 545
           DDRD++G KRL+LAG LL+ +F   F +   ++           KE N++  V   +L +
Sbjct: 1   DDRDHFGKKRLDLAGPLLASLFRGTFNKLTKDVYKYLQKCVENNKEFNMTLAVKSTHLTN 60

Query: 546 GWWFELKYGN 555
           G  + L  GN
Sbjct: 61  GLRYSLATGN 70


>gi|392571043|gb|EIW64215.1| DNA-dependent RNA polymerase II second largest subunit [Trametes
            versicolor FP-101664 SS1]
          Length = 1231

 Score =  216 bits (551), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 162/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 761  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKF 820

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 821  RELPAGQNAVVAILCYSGYNQEDSVIMNQSSIDRGLFRSMYYRSYMDLEKKSGIQQLEEF 880

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  ++  R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 881  EKPTRDSTLRMKHGTYDKLEDDGLIAPGTNVNGEDIIIGKTAPIPPDSEELGQRTRTHTK 940

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++N+E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 941  RDVSTPLKSTEQGIIDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 1000

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 1001 RQEDMPFTAEGITPDIIINPHAI 1023



 Score =  191 bits (486), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 90/188 (47%), Positives = 123/188 (65%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++N+E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 941  RDVSTPLKSTEQGIIDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 1000

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 1001 RQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVES 1060

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
            V + L + GY  +G +I Y G TG  ++A +Y GP YYQ+LKHMV DKIH+R+RGP  +L
Sbjct: 1061 VSQFLRQKGYQSRGLEIMYHGHTGRKIQAQVYLGPTYYQRLKHMVDDKIHSRARGPVQIL 1120

Query: 1363 TRQPTGRR 1370
            TRQP   R
Sbjct: 1121 TRQPVEGR 1128



 Score =  109 bits (272), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 91/151 (60%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F +   ++ +TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 450 EFQLGLAVKHNTITNGLKYSLATGNWGDQKKTMSSKAGVSQVLNRYTYASTLSHLRRCNT 509

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNL+LM+ I+  +    +++ +  
Sbjct: 510 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSCISVGSLSAPVIEFLEE 569

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E +        SS     VFVNG+  G+
Sbjct: 570 WGLESL---EENAHSSTPCTKVFVNGVWMGV 597



 Score = 87.0 bits (214), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 76/162 (46%), Gaps = 43/162 (26%)

Query: 691 RFDDFLYEGKIEYLDVNEGNDSHIAVS----------ESGIRPG---------------- 724
           ++D+ + +G IE LD  E     I ++           +GI P                 
Sbjct: 680 KWDNLIKDGVIELLDAEEEETVMICMTPEDLENSRLQSAGIDPHENDGELDPSARLKAPT 739

Query: 725 ---VTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMG 781
                TH EI P  +LGVCA I              +P+P HNQ+PRNTYQ AMGKQAMG
Sbjct: 740 NAHTWTHCEIHPSMILGVCASI--------------IPFPDHNQSPRNTYQSAMGKQAMG 785

Query: 782 CIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
               N   R+DT+   L Y Q+P+  ++++    F +LPAG+
Sbjct: 786 IYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQ 827



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 45/77 (58%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A++ L    + H+ +       KA +   MI R++LA  +   LDDRD++G KRL+LAG 
Sbjct: 361 AQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAALERRDLDDRDHFGKKRLDLAGP 420

Query: 516 LLSLMFEDVFKRFNSEL 532
           LL+ +F  +F++   ++
Sbjct: 421 LLANLFRMLFRKLTKDV 437



 Score = 43.5 bits (101), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 2/53 (3%)

Query: 107 KDSPEI--RDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSD 157
           +D  EI   D W ++ SF  +KGLV+  +DSFD F+   +++L+  NA++  D
Sbjct: 26  EDYEEITQEDCWTVISSFFDQKGLVRQQLDSFDEFVQNTMQELVDENADLILD 78


>gi|68131834|gb|AAY85195.1| RNA polymerase II second largest subunit [Callistemon subulatus]
          Length = 952

 Score =  216 bits (551), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 110/270 (40%), Positives = 168/270 (62%), Gaps = 19/270 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 614  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 673

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L +R+ +           ++ 
Sbjct: 674  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR---------DEEKK 724

Query: 1034 LGPLLEADTRKPV------YRHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            +G L++ D  +P        RH +   LD DG+  PG ++    V++ K+ P     A  
Sbjct: 725  MGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDDAQG 784

Query: 1085 MATP-EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1143
             A+    ++  +S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQK
Sbjct: 785  QASRYSRRDHSISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQK 844

Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G +G+   QEDMP+   GI PDII+NPH +
Sbjct: 845  GTVGMTYTQEDMPWTVEGITPDIIVNPHAI 874



 Score =  145 bits (366), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 69/157 (43%), Positives = 100/157 (63%)

Query: 1187 VSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQED 1246
            +S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   QED
Sbjct: 796  ISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 855

Query: 1247 MPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEE 1306
            MP+   GI PDII+NPH  PSRMT+G+LIE + GK     G   + T F    + ++ + 
Sbjct: 856  MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 915

Query: 1307 LIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKL 1343
            L R GY  +G +  Y+G TG  L A I+ GP YYQ+L
Sbjct: 916  LHRCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 952



 Score =  119 bits (298), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 64/146 (43%), Positives = 88/146 (60%), Gaps = 8/146 (5%)

Query: 192 MRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKV 251
           ++  TIT+ L  ++ TGNW        R GV+QVL+RL+Y S L  + R+NS   +  K+
Sbjct: 335 IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLPHLRRLNSPIGREGKL 394

Query: 252 SGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAM 311
           + PR L  SQWGM+CP++TPEG+ACGLVKNLALM +IT  +    +L+ +   G E    
Sbjct: 395 AKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTE---- 450

Query: 312 FNGEELSS---PGVYLVFVNGILAGI 334
            N EE+S    P    +FVNG   GI
Sbjct: 451 -NFEEISPVVIPQATKIFVNGCWVGI 475



 Score =  100 bits (249), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 56/141 (39%), Positives = 79/141 (56%), Gaps = 24/141 (17%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVS-----ESGIRPG-----VTTHLEIAPFTLLGVCA 741
           + D + +G IEY+D  E   + I+++     ++ + P        TH EI P  +LGVCA
Sbjct: 553 WHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLNPEEAYSETYTHCEIHPSLILGVCA 612

Query: 742 GIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYA 801
            I              +P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y 
Sbjct: 613 SI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYP 658

Query: 802 QRPMVESKTIRITNFHKLPAG 822
           Q+P+V ++ +   +F +LPAG
Sbjct: 659 QKPLVTTRAMEHLHFRQLPAG 679



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 14/114 (12%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A++ L    + H+ V       KA Y   +I R++L        DDRD+YGNKRL+LAG 
Sbjct: 239 AKEILQKEMLPHVGVEEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGP 298

Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYGN 555
           LL  +F  +F++   ++           K+ NL   +    + SG  + L  GN
Sbjct: 299 LLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGN 352



 Score = 44.3 bits (103), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 19/68 (27%)

Query: 358 PHECRLRDLTYSAPITVDIEYTRGSQRVVR--------------SDLVIGRMPIMLQSSK 403
           P   RLR+LTYSAP+ VD+     S RV++                + IG++PIML+SS 
Sbjct: 7   PKAARLRNLTYSAPLYVDV-----SMRVIKKGHDGEELTEPQDLQKVFIGKVPIMLRSSY 61

Query: 404 CVLRNKTE 411
           C L   +E
Sbjct: 62  CTLYQNSE 69


>gi|55273985|gb|AAV48863.1| RNA polymerase II second largest subunit [Coprinus comatus]
          Length = 699

 Score =  216 bits (551), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 108/263 (41%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 335  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKF 394

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 395  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEF 454

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  E   R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 455  EKPTRETTLRMKHGTYDKLEDDGLIAPGTGVRGEDIIIGKTAPIPPDSEELGQRTRTHTR 514

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 515  RDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRATRIPQIGDKFASRHGQKGTIGITY 574

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 575  RQEDMPFTAEGIVPDIIINPHAI 597



 Score =  192 bits (487), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 91/184 (49%), Positives = 121/184 (65%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 515  RDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRATRIPQIGDKFASRHGQKGTIGITY 574

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 575  RQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVES 634

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
            V   L + GY  +G +I Y G TG  L+A +Y GP YYQ+LKHMV DKIH+R+RGP  +L
Sbjct: 635  VSTFLRQKGYQSRGLEIMYHGHTGRKLQAQVYLGPTYYQRLKHMVDDKIHSRARGPVQIL 694

Query: 1363 TRQP 1366
            TRQP
Sbjct: 695  TRQP 698



 Score =  112 bits (279), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 93/151 (61%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 29  EFNLALAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT 88

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM+ I+  +    +++ +  
Sbjct: 89  PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSYSAPVIEFLEE 148

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E  ++      S+P    VFVNG+  G+
Sbjct: 149 WGLE--SLEENAHSSTPCTK-VFVNGVWMGV 176



 Score = 88.6 bits (218), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/121 (38%), Positives = 65/121 (53%), Gaps = 14/121 (11%)

Query: 706 VNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQ 765
            N+G     A  ++G      TH EI P  +LG+CA I              +P+P HNQ
Sbjct: 298 ANDGEFDPAARLKAGTHAHTWTHCEIHPSMILGICASI--------------IPFPDHNQ 343

Query: 766 APRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQ 825
           +PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  
Sbjct: 344 SPRNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNA 403

Query: 826 I 826
           I
Sbjct: 404 I 404


>gi|55831379|gb|AAV66548.1| RNA polymerase II second largest subunit, partial [Inocybe
            myriadophylla]
          Length = 639

 Score =  216 bits (551), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 107/263 (40%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 339  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKF 398

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 399  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEF 458

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  L+ DG +APG  +    +++ K+ P    S        T   
Sbjct: 459  EKPTRDTTLRMKHGTYDKLEDDGFIAPGTGVRGEDIIIGKTAPIPPDSEELGQRTRTHTR 518

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +   Y+++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 519  RDVSTPLKSTEIGYVDQVLITTNSEGQKFVKVRVRATRIPQIGDKFASRHGQKGTIGITY 578

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PD+I+NPH +
Sbjct: 579  RQEDMPFTAEGIVPDLIINPHAI 601



 Score =  121 bits (303), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 55/113 (48%), Positives = 76/113 (67%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +   Y+++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 519  RDVSTPLKSTEIGYVDQVLITTNSEGQKFVKVRVRATRIPQIGDKFASRHGQKGTIGITY 578

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAF 1295
             QEDMPF   GI PD+I+NPH  PSRMT+G L+E L  K   + GN  + T F
Sbjct: 579  RQEDMPFTAEGIVPDLIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDVTPF 631



 Score =  110 bits (276), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 90/151 (59%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 33  EFNLALAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT 92

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM  I+  +    +++ +  
Sbjct: 93  PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMACISVGSFSGPVIEFLEE 152

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E +        SS     VFVNG+  G+
Sbjct: 153 WGLESL---EENAHSSTTFTKVFVNGVWIGV 180



 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/177 (33%), Positives = 88/177 (49%), Gaps = 22/177 (12%)

Query: 706 VNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQ 765
            N+G     A  ++G      TH EI P  +LG+CA I              +P+P HNQ
Sbjct: 302 ANDGEFDPAARLKAGTHAHTWTHCEIHPSMILGICASI--------------IPFPDHNQ 347

Query: 766 APRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQ 825
           +PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  
Sbjct: 348 SPRNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNA 407

Query: 826 ISPGGAEELTARESCHEVLKIISFSISVAVFDSVWLG-----DVKQGVHQLSEEKEP 877
           I    A    +  +  + + +   SI   +F S++       + K GV QL E ++P
Sbjct: 408 IV---AILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKP 461


>gi|357216611|gb|AET71039.1| RNA polymerase II second largest subunit, partial [Trametes ectypa]
          Length = 680

 Score =  216 bits (551), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 162/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 351  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKF 410

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 411  RELPAGQNAVVAILCYSGYNQEDSVIMNQSSIDRGLFRSMYYRSYMDLEKKSGIQQLEEF 470

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  ++  R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 471  EKPTRDSTLRMKHGTYDKLEDDGLIAPGTNVNGEDIIIGKTAPIPPDSEELGQRTRTHTK 530

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++N+E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 531  RDVSTPLKSTEQGIIDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 590

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 591  RQEDMPFTAEGITPDIIINPHAI 613



 Score =  137 bits (345), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 65/149 (43%), Positives = 93/149 (62%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++N+E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 531  RDVSTPLKSTEQGIIDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 590

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 591  RQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVES 650

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEA 1331
            V + L + GY  +G +I Y G TG  ++A
Sbjct: 651  VSQFLRQKGYQSRGLEIMYHGHTGRKIQA 679



 Score =  109 bits (272), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 93/151 (61%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F +   ++ +TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 40  EFQLGLAVKHNTITNGLKYSLATGNWGDQKKTMSSKAGVSQVLNRYTYASTLSHLRRCNT 99

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNL+LM+ I+  +    +++ +  
Sbjct: 100 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSCISVGSLSAPVIEFLEE 159

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E  ++      S+P    VFVNG+  G+
Sbjct: 160 WGLE--SLEENAHSSTPCTK-VFVNGVWMGV 187



 Score = 87.4 bits (215), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 76/162 (46%), Gaps = 43/162 (26%)

Query: 691 RFDDFLYEGKIEYLDVNEGNDSHIAVS----------ESGIRPG---------------- 724
           ++D+ + +G IE LD  E     I ++           +GI P                 
Sbjct: 270 KWDNLIKDGVIELLDAEEEETVMICMTPEDLENSRLQSAGIDPHENDGELDPSARLKAPT 329

Query: 725 ---VTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMG 781
                TH EI P  +LGVCA I              +P+P HNQ+PRNTYQ AMGKQAMG
Sbjct: 330 NAHTWTHCEIHPSMILGVCASI--------------IPFPDHNQSPRNTYQSAMGKQAMG 375

Query: 782 CIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
               N   R+DT+   L Y Q+P+  ++++    F +LPAG+
Sbjct: 376 IYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQ 417


>gi|56694298|gb|AAW22889.1| RNA polymerase II second largest subunit [Adiantum tenerum]
          Length = 469

 Score =  216 bits (551), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 107/270 (39%), Positives = 165/270 (61%), Gaps = 19/270 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 199  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHF 258

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R + YR+ +           ++ 
Sbjct: 259  RQLPAGINAVVAIACYSGYNQEDSVIMNQSSIDRGFFRSIFYRSYR---------DEEKK 309

Query: 1034 LGPLLEADTRKPVYRHR---------ALDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
             G L++ +  +P+  H           LD DG+  PG ++    V++ K+ P       +
Sbjct: 310  QGSLVKEEXERPIREHTQGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDDTGT 369

Query: 1085 MATPEYK-EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1143
            +A    K +     + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQK
Sbjct: 370  LAQRYSKRDQSTCLRHSESGMVDQVLLTTNADGLRFVKIRVRSIRIPQIGDKFSSRHGQK 429

Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G +G+   QEDMP+ + GI PDII+NPH +
Sbjct: 430  GTVGMTYTQEDMPWTQEGISPDIIVNPHAI 459



 Score =  103 bits (256), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 43/79 (54%), Positives = 62/79 (78%)

Query: 1197 LEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICP 1256
            +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   QEDMP+ + GI P
Sbjct: 391  VDQVLLTTNADGLRFVKIRVRSIRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTQEGISP 450

Query: 1257 DIIMNPHGYPSRMTVGKLI 1275
            DII+NPH  PSRMT+G+LI
Sbjct: 451  DIIVNPHAIPSRMTIGQLI 469



 Score = 99.4 bits (246), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/171 (36%), Positives = 85/171 (49%), Gaps = 39/171 (22%)

Query: 677 RPTFLNMHQFLGFKRFD---------------DFLYEGKIEYLDVNEGNDSHIAVS---- 717
           RP F+   Q L  K+ D               D + +G IEY+D  E   + I+++    
Sbjct: 108 RPLFIVEKQRLLIKKSDVRALQQKETTEPGWYDLVAKGYIEYVDTEEEETTMISMTIQDL 167

Query: 718 -ESGIRP-----GVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTY 771
             + + P        TH  I P  +LGVCA I              +P+P HNQ+PRNTY
Sbjct: 168 VNARLHPEEAYSNTYTHCXIHPSMILGVCASI--------------IPFPDHNQSPRNTY 213

Query: 772 QCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAG 822
           Q AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F +LPAG
Sbjct: 214 QSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG 264



 Score = 50.1 bits (118), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 39/67 (58%), Gaps = 8/67 (11%)

Query: 271 PEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMFNGEELSS---PGVYLVFV 327
           PEG+ACGLVKNLALM++IT  +    +L+ +     E  +  N EE+S    P    +FV
Sbjct: 1   PEGQACGLVKNLALMSYITVGSAANPILEFL-----EEWSTENFEEISPAVIPNATKIFV 55

Query: 328 NGILAGI 334
           NG   GI
Sbjct: 56  NGCWVGI 62


>gi|159041032|ref|YP_001540284.1| DNA-directed RNA polymerase subunit B [Caldivirga maquilingensis
            IC-167]
 gi|157919867|gb|ABW01294.1| RNA polymerase Rpb2 domain 6 [Caldivirga maquilingensis IC-167]
          Length = 1131

 Score =  216 bits (551), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 106/262 (40%), Positives = 169/262 (64%), Gaps = 2/262 (0%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++PY  HNQ+PRN Y+ AM KQ++G    N + RID+  + L+Y +RP+V ++ + +  +
Sbjct: 665  IIPYSEHNQSPRNIYEAAMAKQSLGFPYSNYRYRIDSRGHLLLYPERPLVTTRGLELIGY 724

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
               P+GQNA +A++S+ GY IEDA+++NKA+++RG  R + YR+ +    +YP   +DRI
Sbjct: 725  SMRPSGQNAVLALVSFMGYSIEDAVMINKAAIERGMFRSIFYRSYETEAMRYPMGENDRI 784

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAI--SMATPEYK 1091
              P       +    +  LD+DGIV P   +  ++VL+ K  P    SA+  S    E+K
Sbjct: 785  TIPPPTVRDYRGAEAYAHLDEDGIVPPEVFVSSKEVLIGKISPPRFYSALAESQLAGEWK 844

Query: 1092 EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVE 1151
            +  ++ +      +++VL++ +SE   LIK+ +R+ R PE+GDKF+SRHGQKGV+G+IV 
Sbjct: 845  DNSITVRRGEKGIVDQVLITESSEGFKLIKVKVRELRIPELGDKFASRHGQKGVVGMIVP 904

Query: 1152 QEDMPFNESGICPDIIMNPHGL 1173
             EDMPF E+GI PD+++NPH L
Sbjct: 905  MEDMPFTENGITPDVVINPHAL 926



 Score =  197 bits (501), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 92/190 (48%), Positives = 132/190 (69%)

Query: 1181 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1240
            E+K+  ++ +      +++VL++ +SE   LIK+ +R+ R PE+GDKF+SRHGQKGV+G+
Sbjct: 842  EWKDNSITVRRGEKGIVDQVLITESSEGFKLIKVKVRELRIPELGDKFASRHGQKGVVGM 901

Query: 1241 IVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKL 1300
            IV  EDMPF E+GI PD+++NPH  PSRMT+G+L+E +AGK   + G   + T F G   
Sbjct: 902  IVPMEDMPFTENGITPDVVINPHALPSRMTIGQLLEAIAGKTAALYGTLVDATPFEGVPE 961

Query: 1301 VDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRV 1360
              ++  L++ GY + G++  YSG+ G  L+A I+ G VYYQKL HMV DKIHAR+ GP  
Sbjct: 962  GTIRSMLMKAGYRWSGRETMYSGLMGTRLDADIFIGVVYYQKLHHMVADKIHARATGPMQ 1021

Query: 1361 VLTRQPTGRR 1370
            +LTRQPT  R
Sbjct: 1022 ILTRQPTEGR 1031



 Score = 94.0 bits (232), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 52/143 (36%), Positives = 79/143 (55%), Gaps = 8/143 (5%)

Query: 192 MRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKV 251
           +R D I++ L  A+ TGNW        + GVTQ+L R +Y+S +  + R+ S   +T+  
Sbjct: 406 VRADIISDRLKHALSTGNWV-----GGKTGVTQMLDRTNYVSTISHLRRVVSSLSRTQPH 460

Query: 252 SGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAM 311
              R L  +QWG LC  +TPEG+ CGLVKN+ALM  +T   DE ++  ++  +G+ ++  
Sbjct: 461 FEARDLHPTQWGRLCAIETPEGQNCGLVKNMALMATVTVGVDEASVEAMLREMGVINVLD 520

Query: 312 FNGEELSSPGVYLVFVNGILAGI 334
               E+    V L   NG L GI
Sbjct: 521 ARRNEIKGANVLL---NGRLIGI 540



 Score = 84.0 bits (206), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 74/136 (54%), Gaps = 15/136 (11%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSES-GIRPGVTTHLEIAPFTLLGVCAGIELLQYNK 750
           +DD +  G +EYLD +E  ++ + + ++  +     TH+EI P  +LG  A I       
Sbjct: 613 WDDLVKNGIVEYLDADEEENAMVTIGDTKDVDLSKYTHMEIIPSIMLGAVAHI------- 665

Query: 751 RFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKT 810
                  +PY  HNQ+PRN Y+ AM KQ++G    N + RID+  + L+Y +RP+V ++ 
Sbjct: 666 -------IPYSEHNQSPRNIYEAAMAKQSLGFPYSNYRYRIDSRGHLLLYPERPLVTTRG 718

Query: 811 IRITNFHKLPAGKCQI 826
           + +  +   P+G+  +
Sbjct: 719 LELIGYSMRPSGQNAV 734



 Score = 44.3 bits (103), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 38/59 (64%), Gaps = 4/59 (6%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           D+W LV S+++  GLV+  IDSF+ F++ ++K+++Q       DV     +K++D+ VG
Sbjct: 31  DRWTLVESYVRSYGLVRHQIDSFNDFVDRKLKEIVQEFNIDLGDVK----VKFIDVEVG 85


>gi|123979416|gb|ABM81533.1| RNA polymerase II second largest subunit [Buellia dialyta]
          Length = 706

 Score =  216 bits (551), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 110/288 (38%), Positives = 171/288 (59%), Gaps = 6/288 (2%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R++T+ + L Y Q+P+  ++++    F
Sbjct: 364  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDQRMETMAHILYYPQKPLATTRSMEFLKF 423

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR+   V KQ    T +  
Sbjct: 424  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDVEKQIGLNTLESF 483

Query: 1034 LGPLLEADTRKPVYRHRALDQ-DGIVAPGEQICERQVLVNKSMPTISVSAISMATP---- 1088
              P+     +     +  LD  DGI+ PG ++    +++ K+ P I+  A  +       
Sbjct: 484  EKPMRMNTMKLKHGTYEKLDDGDGIIVPGCRVSGEDIIIGKTAP-IAADAEELGQGTKIR 542

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
            E ++V    + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHGQKG IG+
Sbjct: 543  EKRDVSTPLRSTESGLVDQVLLTTNAEGRRFVKVRMRTTKIPQIGDKFASRHGQKGTIGI 602

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSY 1196
               QEDMPF   G+ PD+I+NPH +     I    E  +S   S+  Y
Sbjct: 603  TYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGY 650



 Score =  146 bits (369), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 68/167 (40%), Positives = 103/167 (61%)

Query: 1178 RITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV 1237
            +I E ++V    + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHGQKG 
Sbjct: 540  KIREKRDVSTPLRSTESGLVDQVLLTTNAEGRRFVKVRMRTTKIPQIGDKFASRHGQKGT 599

Query: 1238 IGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGG 1297
            IG+   QEDMPF   G+ PD+I+NPH  PSRMT+  LIE    K   + G     T F  
Sbjct: 600  IGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGYEGGATPFTD 659

Query: 1298 TKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLK 1344
              + +V + L  HGY  +G ++ Y+G TG  L A ++ GP YYQ+L+
Sbjct: 660  VTVDNVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLR 706



 Score =  112 bits (280), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 51/151 (33%), Positives = 92/151 (60%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++ +TI+N L  ++ TGNW   ++    + GV+QVL+R ++ S L  + R N+
Sbjct: 39  EFNLTIAVKSNTISNGLKYSLATGNWGEQKKAASSKAGVSQVLNRFTFASTLSHLRRTNT 98

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM +++       +   +  
Sbjct: 99  PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCNVSVGTPSGGLADFLNE 158

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E +  +  + L+SP    +F+NG+  G+
Sbjct: 159 RGMETLEEY--DPLTSPHATKIFLNGVWVGV 187



 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 42/100 (42%), Positives = 59/100 (59%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 348 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 393

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R++T+ + L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 394 YDQRMETMAHILYYPQKPLATTRSMEFLKFRELPAGQNAI 433


>gi|56694300|gb|AAW22890.1| RNA polymerase II second largest subunit [Anemia phyllitidis]
          Length = 549

 Score =  216 bits (551), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 110/261 (42%), Positives = 159/261 (60%), Gaps = 1/261 (0%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 203  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHF 262

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
              LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R + YR+ +   K+      +  
Sbjct: 263  RHLPAGINAVVAIACYSGYNQEDSVIMNQSSVDRGFFRSIFYRSYRDEEKKQGTLVKEEF 322

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYK-E 1092
              P  EA        +  LD DG+  PG ++    V++ K+ P       S A    K +
Sbjct: 323  ERPNREATLGMRHGSYEKLDDDGLAPPGTRVSGEDVIIGKTTPLPQDDTGSQAQRYSKRD 382

Query: 1093 VPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQ 1152
                 + S    +++VL+++NSE    +K+ +R  R P+IGDKFSSRHGQKG +G+   Q
Sbjct: 383  QSTCLRHSESGMIDQVLLTTNSEGLRFVKIRVRSIRIPQIGDKFSSRHGQKGTVGMTYTQ 442

Query: 1153 EDMPFNESGICPDIIMNPHGL 1173
            EDMP+ + GI PDII+NPH +
Sbjct: 443  EDMPWTQEGITPDIIVNPHAI 463



 Score =  159 bits (402), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 74/155 (47%), Positives = 103/155 (66%)

Query: 1197 LEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICP 1256
            +++VL+++NSE    +K+ +R  R P+IGDKFSSRHGQKG +G+   QEDMP+ + GI P
Sbjct: 395  IDQVLLTTNSEGLRFVKIRVRSIRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTQEGITP 454

Query: 1257 DIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQG 1316
            DII+NPH  PSRMT+G+LIE + GK     G   + T F    + ++ + L R GY  +G
Sbjct: 455  DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHRCGYQMRG 514

Query: 1317 KDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKI 1351
             +  Y+G +G  L A I+ GP YYQ+ KHMV DKI
Sbjct: 515  FETMYNGHSGRRLSAMIFLGPTYYQRPKHMVDDKI 549



 Score =  100 bits (249), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 63/171 (36%), Positives = 84/171 (49%), Gaps = 39/171 (22%)

Query: 677 RPTFLNMHQFLGFKRFD---------------DFLYEGKIEYLDVNEGNDSHIAVSESGI 721
           RP F+   Q L  K+ D               D + +G IEY+D  E   + I+++ S +
Sbjct: 112 RPLFIVEKQRLLIKKSDIRALQSKDTAEVGWHDLVTKGFIEYVDTEEEETTMISMTISDL 171

Query: 722 ----------RPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTY 771
                          TH EI P  +LGVCA I              +P+P HNQ+PRNTY
Sbjct: 172 VNSRNHPEEAYSDTYTHCEIHPSMILGVCASI--------------IPFPDHNQSPRNTY 217

Query: 772 QCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAG 822
           Q AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F  LPAG
Sbjct: 218 QSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRHLPAG 268



 Score = 50.8 bits (120), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 44/77 (57%), Gaps = 11/77 (14%)

Query: 267 PSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMFNGEELSS---PGVY 323
           P++TPEG+A GLVKNLALM +IT  +    +L+ +     E  +  N EE+S    P   
Sbjct: 1   PAETPEGQAWGLVKNLALMAYITVGSAANPILEFL-----EEWSTENFEEISPAVIPQAT 55

Query: 324 LVFVNGILAGITCHHKE 340
            +FVNG   GI   H+E
Sbjct: 56  KIFVNGCWVGI---HRE 69


>gi|55273989|gb|AAV48865.1| RNA polymerase II second largest subunit [Amanita brunnescens]
          Length = 694

 Score =  216 bits (551), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 331  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKF 390

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 391  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEF 450

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 451  EKPTRDTTLRMKHGTYDKLEDDGLIAPGTNVTGEDIIIGKTAPIPPDSEELGQRTRTHTR 510

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 511  RDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITY 570

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PD+I+NPH +
Sbjct: 571  RQEDMPFTAEGIVPDLIINPHAI 593



 Score =  191 bits (486), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 90/184 (48%), Positives = 121/184 (65%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 511  RDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITY 570

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PD+I+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 571  RQEDMPFTAEGIVPDLIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVES 630

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
            V   L + GY  +G ++ Y G TG  L+A IY GP YYQ+LKHMV DKIH+R+RGP  +L
Sbjct: 631  VSTFLRQKGYQSRGLEVMYHGHTGRKLQAQIYLGPTYYQRLKHMVDDKIHSRARGPVQIL 690

Query: 1363 TRQP 1366
            TRQP
Sbjct: 691  TRQP 694



 Score =  110 bits (276), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 58/153 (37%), Positives = 92/153 (60%), Gaps = 8/153 (5%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 25  EFNLALAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT 84

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM  I+  +    +++ +  
Sbjct: 85  PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEE 144

Query: 304 IGIEHIAMFNGEELSSPGV--YLVFVNGILAGI 334
            G+E +     EE +   V    VFVNG+  G+
Sbjct: 145 WGLESL-----EENAHSAVPCTKVFVNGVWMGV 172



 Score = 92.8 bits (229), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/178 (34%), Positives = 91/178 (51%), Gaps = 22/178 (12%)

Query: 705 DVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHN 764
           +VN+G     A  ++GI     TH EI P  +LG+CA I              +P+P HN
Sbjct: 293 NVNDGEFDPAARLKAGISAHAWTHCEIHPSMILGICASI--------------IPFPDHN 338

Query: 765 QAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKC 824
           Q+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+ 
Sbjct: 339 QSPRNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQN 398

Query: 825 QISPGGAEELTARESCHEVLKIISFSISVAVFDSVWLG-----DVKQGVHQLSEEKEP 877
            I    A    +  +  + + +   SI   +F S++       + K GV QL E ++P
Sbjct: 399 AIV---AILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKP 453


>gi|365927726|gb|AEX07767.1| RNA polymerase II subunit 2 [Steccherinum tenue]
          Length = 318

 Score =  216 bits (551), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 18   IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLRF 77

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 78   RELPAGQNAVVAILCYSGYNQEDSVIMNQSSIDRGLFRSMYYRSYMDLEKKSGVQQLEEF 137

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  E   R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 138  EKPTRENTLRMKHGTYDKLEDDGLIAPGTNVNGEDIIIGKTAPIPPDSEELGQRTKTHSR 197

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++N+E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 198  RDVSTPLKSTESGIIDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 257

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PD+I+NPH +
Sbjct: 258  RQEDMPFTAEGITPDLIINPHAI 280



 Score =  117 bits (293), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 52/113 (46%), Positives = 74/113 (65%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++N+E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 198  RDVSTPLKSTESGIIDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 257

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAF 1295
             QEDMPF   GI PD+I+NPH  PSRMT+G L+E L  K   + G   + T F
Sbjct: 258  RQEDMPFTAEGITPDLIINPHAIPSRMTIGHLVECLLSKVATLLGQEGDATPF 310



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/156 (35%), Positives = 81/156 (51%), Gaps = 22/156 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LGVCA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 2   THCEIHPSMILGVCASI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYLTN 47

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQISPGGAEELTARESCHEVLKI 846
              R+DT+   L Y Q+P+  ++++    F +LPAG+  +    A    +  +  + + +
Sbjct: 48  FLVRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNAVV---AILCYSGYNQEDSVIM 104

Query: 847 ISFSISVAVFDSVWLG-----DVKQGVHQLSEEKEP 877
              SI   +F S++       + K GV QL E ++P
Sbjct: 105 NQSSIDRGLFRSMYYRSYMDLEKKSGVQQLEEFEKP 140


>gi|365927724|gb|AEX07766.1| RNA polymerase II subunit 2 [Steccherinum ochraceum]
          Length = 673

 Score =  216 bits (551), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 105/263 (39%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 368  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLRF 427

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 428  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSVDRGLFRSMYYRSYMDLEKKSGVQQLEEF 487

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 488  EKPTRDTTLRMKHGTYDKLEDDGLIAPGTNVSGEDIIIGKTAPIPPDSEELGQRTKTHSR 547

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++N+E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 548  RDVSTPLKSTESGIIDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGIAY 607

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDI++NPH +
Sbjct: 608  RQEDMPFTAEGITPDIVINPHAI 630



 Score =  118 bits (295), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 55/128 (42%), Positives = 79/128 (61%), Gaps = 5/128 (3%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++N+E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 548  RDVSTPLKSTESGIIDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGIAY 607

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDI++NPH  PSRMT+G L+E L  K   + G   + T F      D
Sbjct: 608  RQEDMPFTAEGITPDIVINPHAIPSRMTIGHLVECLLSKVATLLGQEGDATPF-----TD 662

Query: 1303 VQEELIRH 1310
            +  E + H
Sbjct: 663  LTVESVSH 670



 Score =  110 bits (276), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 92/151 (60%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKM-ERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++ +TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 43  EFNLALAVKHNTITNGLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNT 102

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNL+LM+ I+  +    +++ +  
Sbjct: 103 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSCISVGSLSAPVIEFLEE 162

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E +        S+     VFVNG+  G+
Sbjct: 163 WGLESL---EENAHSATPCTKVFVNGVWMGV 190



 Score = 87.4 bits (215), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 74/161 (45%), Gaps = 40/161 (24%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVS--------------------------ESGIRPGV 725
           +DD +  G +E LD  E     I +S                          ++G     
Sbjct: 291 WDDLIRGGVVELLDAEEEETVMICMSPEDLYSSRTEDSQPDPTEDFDPAARLKAGSNAHS 350

Query: 726 TTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGY 785
            TH EI P  +LGVCA I              +P+P HNQ+PRNTYQ AMGKQAMG    
Sbjct: 351 FTHCEIHPSMILGVCASI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYLT 396

Query: 786 NQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
           N   R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 397 NFLVRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNAI 437


>gi|300394728|gb|ADK11902.1| DNA-directed RNA polymerase II subunit two, partial [Piloderma
            fallax]
          Length = 686

 Score =  216 bits (551), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 107/263 (40%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 352  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKF 411

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 412  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEF 471

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  E   R     +  ++ DG++APG  +    +++ K+ P    S        T   
Sbjct: 472  EKPTRENTLRMKHGTYDKIEDDGLIAPGTGVSGEDIIIGKTAPIPPDSEELGQRTRTHNR 531

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 532  RDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRATRIPQIGDKFASRHGQKGTIGITY 591

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 592  RQEDMPFTAEGIVPDIIINPHAI 614



 Score =  143 bits (360), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 69/160 (43%), Positives = 97/160 (60%)

Query: 1178 RITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV 1237
            R    ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG 
Sbjct: 527  RTHNRRDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRATRIPQIGDKFASRHGQKGT 586

Query: 1238 IGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGG 1297
            IG+   QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F  
Sbjct: 587  IGITYRQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTD 646

Query: 1298 TKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGP 1337
              +  V   L + GY  +G ++ Y G +G  L+A +Y GP
Sbjct: 647  LTVESVSTFLRQKGYQSRGLEVMYHGHSGRKLQAQVYLGP 686



 Score =  110 bits (276), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 92/151 (60%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 46  EFNLSLAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT 105

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM  I+  +    +++ +  
Sbjct: 106 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMACISVGSLSAPVIEFLEE 165

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E  ++      S+P    VFVNG+  G+
Sbjct: 166 WGLE--SLEENAHSSTPCTK-VFVNGVWMGV 193



 Score = 87.0 bits (214), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 60/177 (33%), Positives = 88/177 (49%), Gaps = 25/177 (14%)

Query: 709 GNDSHI---AVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQ 765
            NDS     A  ++G      TH EI P  +LG+CA I              +P+P HNQ
Sbjct: 315 ANDSDFDPAARLKAGTDAHTWTHCEIHPSMILGICASI--------------IPFPDHNQ 360

Query: 766 APRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQ 825
           +PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  
Sbjct: 361 SPRNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNA 420

Query: 826 ISPGGAEELTARESCHEVLKIISFSISVAVFDSVWLG-----DVKQGVHQLSEEKEP 877
           I    A    +  +  + + +   SI   +F S++       + K GV QL E ++P
Sbjct: 421 IV---AILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKP 474


>gi|103001206|gb|ABF71497.1| DNA-dependent RNA polymerase II second largest subunit [Acarospora
            fulvoviridula]
          Length = 708

 Score =  216 bits (551), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 106/264 (40%), Positives = 167/264 (63%), Gaps = 5/264 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 364  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDQRMDTMANILYYPQKPLATTRSMEFLKF 423

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR+     K+      ++ 
Sbjct: 424  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSVVEQF 483

Query: 1034 LGPLLEADTRKPVY-RHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAISMATPEY- 1090
              P + +DT K  +  +  LD+DGIVAPG ++    +++ K+ P       +   T  + 
Sbjct: 484  EKP-MRSDTLKLKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKLHV 542

Query: 1091 -KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             ++V    + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHGQKG IG+ 
Sbjct: 543  KRDVSTPLRSTENGIVDQVLITTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGIT 602

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
              QEDMPF + G+ PD+I+NPH +
Sbjct: 603  YRQEDMPFTKEGVVPDLIINPHAI 626



 Score =  155 bits (392), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 83/234 (35%), Positives = 131/234 (55%), Gaps = 13/234 (5%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESG-ICPDIIMNPHGL 1173
            ++ Q  +P   D    +HG      + G++  G+ V  ED+   ++  I PD       L
Sbjct: 479  VVEQFEKPMRSDTLKLKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAPIAPD----AEEL 534

Query: 1174 KGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
                ++   ++V    + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHG
Sbjct: 535  GQRTKLHVKRDVSTPLRSTENGIVDQVLITTNAEGLRFVKVRMRTTKIPQIGDKFASRHG 594

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGT 1293
            QKG IG+   QEDMPF + G+ PD+I+NPH  PSRMT+  LIE    K   + G   + T
Sbjct: 595  QKGTIGITYRQEDMPFTKEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDAT 654

Query: 1294 AFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMV 1347
             F    +  V + L  HGY  +G ++ Y+G TG  L A ++ GP YYQ+L+HMV
Sbjct: 655  PFTEVTVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMV 708



 Score =  114 bits (286), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 91/151 (60%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW   ++    + GV+QVL+R ++ S L  + R N+
Sbjct: 41  EFNLTLGVKSTTITNGLKYSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNT 100

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT     + +++ M  
Sbjct: 101 PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIEFMIQ 160

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
             +E +  +  E   SP    VFVNG+  G+
Sbjct: 161 RNMEVLEEY--EPQRSPNATKVFVNGVWVGV 189



 Score = 90.1 bits (222), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 348 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 393

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 394 YDQRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 433


>gi|88601058|gb|ABD46525.1| RNA polymerase II second largest subunit, partial [Sistotrema
            confluens]
          Length = 680

 Score =  216 bits (551), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 105/263 (39%), Positives = 160/263 (60%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DT+   L Y Q+P+  ++++    F
Sbjct: 353  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNYQVRMDTMANILYYPQKPLATTRSMEYLRF 412

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNAT+A++ YSGY+ ED++IMN++S+DRG  R + YR+     K+      +  
Sbjct: 413  RELPAGQNATVAILCYSGYNQEDSVIMNQSSIDRGLFRSMYYRSYTDAEKKVGILPLEEF 472

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  L+ DG++APG  +    +++ K+ P    S      M T   
Sbjct: 473  EKPTRDTTLRMKHGTYEKLEDDGLIAPGTGVTGEDIIIGKTAPLPPDSEELGQRMRTHTR 532

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VLV++N +    +K+ +R TR P++GDKF+SRHGQKG +G+  
Sbjct: 533  RDVSTPLKSTENGIVDQVLVTTNQDGLKFVKIRIRATRIPQVGDKFASRHGQKGTVGITY 592

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
              EDMPF   GI PDII+NPH +
Sbjct: 593  RHEDMPFTAEGITPDIIINPHAI 615



 Score =  135 bits (339), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 64/153 (41%), Positives = 93/153 (60%)

Query: 1178 RITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV 1237
            R    ++V    K +    +++VLV++N +    +K+ +R TR P++GDKF+SRHGQKG 
Sbjct: 528  RTHTRRDVSTPLKSTENGIVDQVLVTTNQDGLKFVKIRIRATRIPQVGDKFASRHGQKGT 587

Query: 1238 IGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGG 1297
            +G+    EDMPF   GI PDII+NPH  PSRMT+G LIE L  K   + GN  + T F  
Sbjct: 588  VGITYRHEDMPFTAEGITPDIIINPHAIPSRMTIGHLIECLLSKLATLIGNEGDATPFTE 647

Query: 1298 TKLVDVQEELIRHGYNYQGKDIFYSGITGEALE 1330
              +  V + L +HGY  +G ++ Y G TG+ L+
Sbjct: 648  LTVESVSQLLRQHGYQSRGLEVMYHGHTGKKLQ 680



 Score =  108 bits (270), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 92/151 (60%), Gaps = 6/151 (3%)

Query: 186 FDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINSQ 244
           F+I   ++ +TITN L  ++ TGNW  ++  M  + GV+QVL+R ++ S L  + R N+ 
Sbjct: 47  FNISIAVKSNTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTFASTLSHLRRCNTP 106

Query: 245 FEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNI 304
             +  K++ PR L  + WGM+CP++TPEG+ACGLVKNL+LM  I+  +    +++ +   
Sbjct: 107 LGRDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMACISVGSLSAPVIEFLQEW 166

Query: 305 GIEHIAMFNGEELSSPG-VYLVFVNGILAGI 334
           G+E +     E  ++ G    VFVNG+  G+
Sbjct: 167 GLESLE----ENANAHGSATKVFVNGVWMGV 193



 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/97 (44%), Positives = 58/97 (59%), Gaps = 14/97 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 337 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYLTN 382

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
            Q R+DT+   L Y Q+P+  ++++    F +LPAG+
Sbjct: 383 YQVRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQ 419


>gi|300394766|gb|ADK11921.1| DNA-directed RNA polymerase II subunit two, partial [Plicaturopsis
            crispa]
          Length = 629

 Score =  216 bits (551), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 162/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 345  IIPFPDHNQSPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKF 404

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 405  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEF 464

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P+ E   R     +  ++ DG++APG  +    +++ K+ P    S        T   
Sbjct: 465  EKPVRENTLRMKHGTYDKIEDDGLIAPGTGVTGEDIIIGKTAPIPPDSEELGQRTRTHTR 524

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ +R +R P+IGDKF+SRHGQKG IG+  
Sbjct: 525  RDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSSRIPQIGDKFASRHGQKGTIGITY 584

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 585  RQEDMPFTSEGIVPDIIINPHAI 607



 Score =  114 bits (284), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 52/110 (47%), Positives = 72/110 (65%)

Query: 1178 RITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV 1237
            R    ++V    K +    +++VL+++NSE    +K+ +R +R P+IGDKF+SRHGQKG 
Sbjct: 520  RTHTRRDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSSRIPQIGDKFASRHGQKGT 579

Query: 1238 IGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEG 1287
            IG+   QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + G
Sbjct: 580  IGITYRQEDMPFTSEGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIG 629



 Score =  111 bits (277), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 92/151 (60%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 40  EFNLALAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT 99

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM  I+  +    +++ +  
Sbjct: 100 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEE 159

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E  ++      S+P    VFVNG+  G+
Sbjct: 160 WGLE--SLEENAHSSTPCTK-VFVNGVWMGV 187



 Score = 86.7 bits (213), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 84/165 (50%), Gaps = 22/165 (13%)

Query: 718 ESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGK 777
           ++GI     TH EI P  +LGV A I              +P+P HNQ+PRNTYQ AMGK
Sbjct: 320 KAGINAHTWTHCEIHPSMILGVAASI--------------IPFPDHNQSPRNTYQSAMGK 365

Query: 778 QAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQISPGGAEELTAR 837
           QAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  I    A    + 
Sbjct: 366 QAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIV---AILCYSG 422

Query: 838 ESCHEVLKIISFSISVAVFDSVWLG-----DVKQGVHQLSEEKEP 877
            +  + + +   SI   +F S++       + K GV QL E ++P
Sbjct: 423 YNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKP 467


>gi|45545301|gb|AAS67498.1| DNA-dependent RNA polymerase II second largest subunit, partial
            [Amanita phalloides]
          Length = 917

 Score =  216 bits (551), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 542  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKF 601

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 602  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEF 661

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 662  EKPTRDTTLRMKHGTYDKLEDDGLIAPGTNVTGEDIIIGKTAPIPPDSEELGQRTRTHTR 721

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 722  RDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRATRIPQIGDKFASRHGQKGTIGITY 781

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PD+I+NPH +
Sbjct: 782  RQEDMPFTAEGITPDLIINPHAI 804



 Score =  191 bits (485), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 91/188 (48%), Positives = 123/188 (65%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 722  RDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRATRIPQIGDKFASRHGQKGTIGITY 781

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PD+I+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 782  RQEDMPFTAEGITPDLIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVES 841

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
            V   L + GY+ +G ++ Y G TG  L+A IY GP YYQ+LKHMV DKIH+R+RGP  +L
Sbjct: 842  VSTFLRQKGYHSRGLEVMYHGHTGRKLQAQIYLGPTYYQRLKHMVDDKIHSRARGPVQIL 901

Query: 1363 TRQPTGRR 1370
            TRQP   R
Sbjct: 902  TRQPVEGR 909



 Score =  110 bits (276), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 58/153 (37%), Positives = 92/153 (60%), Gaps = 8/153 (5%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 236 EFNLALAVKHQTITNGLKYSLATGNWGDQKKSMSTKAGVSQVLNRYTYASTLSHLRRCNT 295

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM  I+  +    +++ +  
Sbjct: 296 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEE 355

Query: 304 IGIEHIAMFNGEELSSPGV--YLVFVNGILAGI 334
            G+E +     EE +   V    VFVNG+  G+
Sbjct: 356 WGLESL-----EENAHSAVPCTKVFVNGVWMGV 383



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/178 (33%), Positives = 89/178 (50%), Gaps = 22/178 (12%)

Query: 705 DVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHN 764
           +VN+G        ++G      TH EI P  +LG+CA I              +P+P HN
Sbjct: 504 NVNDGEYDPAVRLKAGTSAHTWTHCEIHPSMILGICASI--------------IPFPDHN 549

Query: 765 QAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKC 824
           Q+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+ 
Sbjct: 550 QSPRNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQN 609

Query: 825 QISPGGAEELTARESCHEVLKIISFSISVAVFDSVWLG-----DVKQGVHQLSEEKEP 877
            I    A    +  +  + + +   SI   +F S++       + K GV QL E ++P
Sbjct: 610 AIV---AILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKP 664



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 14/114 (12%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A++ L    + H+ +       KA +   MI R+++A  +   LDDRD++G KRL+LAG 
Sbjct: 147 AQEILQKEMLPHVSMSEGSESKKAYFFGYMIHRLLVAALERRELDDRDHFGKKRLDLAGP 206

Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYGN 555
           LL+ +F  +F++   ++           KE NL+  V    + +G  + L  GN
Sbjct: 207 LLANLFRMLFRKLTKDVYRYLSKCVETHKEFNLALAVKHQTITNGLKYSLATGN 260


>gi|357216637|gb|AET71052.1| RNA polymerase II second largest subunit, partial [Trametes elegans]
          Length = 674

 Score =  216 bits (551), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 345  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLRF 404

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 405  RELPAGQNAVVAILCYSGYNQEDSVIMNQSSIDRGLFRSMYYRSYMDLEKKSGVQQLEEF 464

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 465  EKPTRDTTLRMKHGTYDKLEDDGLIAPGTNVNGEDIIIGKTAPIPPDSEELGQRTRTHTK 524

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++N+E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 525  RDVSTPLKSTESGIIDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 584

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 585  RQEDMPFTAEGITPDIIINPHAI 607



 Score =  138 bits (347), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 65/149 (43%), Positives = 93/149 (62%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++N+E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 525  RDVSTPLKSTESGIIDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 584

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 585  RQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVES 644

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEA 1331
            V + L + GY  +G ++ Y G TG  L+A
Sbjct: 645  VSQFLRQKGYQSRGLEVMYHGHTGRKLQA 673



 Score =  111 bits (277), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 94/151 (62%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++ +TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 40  EFNLSLAVKHNTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT 99

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNL+LM+ I+  +    +++ +  
Sbjct: 100 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSCISVGSLSAPVIEFLEE 159

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E  ++      S+P    VFVNG+  G+
Sbjct: 160 WGLE--SLEENAHASTPCTK-VFVNGVWMGV 187



 Score = 88.6 bits (218), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 76/161 (47%), Gaps = 42/161 (26%)

Query: 691 RFDDFLYEGKIEYLDVNEGNDSHIAVS----------ESGIRPGVT-------------- 726
           ++D+ + +G IE LD  E     I ++           +GI P                 
Sbjct: 265 KWDNLIRDGVIEMLDAEEEETVMICMTPEDLENSRLQAAGIDPNAEGEVDPSARLKAATN 324

Query: 727 ----THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGC 782
               TH EI P  +LGVCA I              +P+P HNQ+PRNTYQ AMGKQAMG 
Sbjct: 325 AHTWTHCEIHPSMILGVCASI--------------IPFPDHNQSPRNTYQSAMGKQAMGI 370

Query: 783 IGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
              N   R+DT+   L Y Q+P+  ++++    F +LPAG+
Sbjct: 371 YLTNFLVRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQ 411


>gi|89274900|gb|ABD65891.1| RNA polymerase II second largest subunit, partial [Pycnoporus sp.
            ZW02.30]
          Length = 896

 Score =  216 bits (551), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 162/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 526  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLRF 585

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 586  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEF 645

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  L++DG++APG  +    +++ K+ P    S        T   
Sbjct: 646  EKPTRDTTLRMKHGTYDKLEEDGLIAPGTNVNGEDIIIGKTAPIPPDSEELGQRTRTHTK 705

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++N+E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 706  RDVSTPLKSTESGIVDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 765

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 766  RQEDMPFTAEGITPDIIINPHAI 788



 Score =  192 bits (487), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 90/188 (47%), Positives = 123/188 (65%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++N+E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 706  RDVSTPLKSTESGIVDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 765

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 766  RQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVES 825

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
            V + L + GY  +G ++ Y G TG  L+A +Y GP YYQ+LKHMV DKIH+R+RGP  +L
Sbjct: 826  VSQFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMVDDKIHSRARGPVQIL 885

Query: 1363 TRQPTGRR 1370
            TRQP   R
Sbjct: 886  TRQPVEGR 893



 Score =  110 bits (276), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 94/151 (62%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++ +TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 221 EFNLSLAVKHNTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT 280

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNL+LM+ I+  +    +++ +  
Sbjct: 281 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSCISVGSLSAPVIEFLEE 340

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E  ++      S+P    VFVNG+  G+
Sbjct: 341 WGLE--SLEENAHSSTPCTK-VFVNGVWMGV 368



 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/220 (30%), Positives = 100/220 (45%), Gaps = 50/220 (22%)

Query: 691 RFDDFLYEGKIEYLDVNEGNDSHIAVS----------ESGIRPGVT-------------- 726
           ++D+ + +G IE LD  E     I ++           +GI P                 
Sbjct: 446 KWDNLIKDGVIELLDAEEEETVMICMTPEDLENSRLQAAGIDPHADAEFDPSARLKAPTN 505

Query: 727 ----THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGC 782
               TH EI P  +LGVCA I              +P+P HNQ+PRNTYQ AMGKQAMG 
Sbjct: 506 AHTWTHCEIHPSMILGVCASI--------------IPFPDHNQSPRNTYQSAMGKQAMGI 551

Query: 783 IGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQISPGGAEELTARESCHE 842
              N   R+DT+   L Y Q+P+  ++++    F +LPAG+  I    A    +  +  +
Sbjct: 552 YLTNFLVRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNAIV---AILCYSGYNQED 608

Query: 843 VLKIISFSISVAVFDSVWLG-----DVKQGVHQLSEEKEP 877
            + +   SI   +F S++       + K GV QL E ++P
Sbjct: 609 SVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKP 648



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 58/114 (50%), Gaps = 14/114 (12%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A++ L    + H+ +       KA +   MI R++LA  +   LDDRD++G KRL+LAG 
Sbjct: 132 AQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAALERRDLDDRDHFGKKRLDLAGP 191

Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYGN 555
           LL+ +F  +F++   ++           KE NLS  V    + +G  + L  GN
Sbjct: 192 LLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLSLAVKHNTITNGLKYSLATGN 245


>gi|357216617|gb|AET71042.1| RNA polymerase II second largest subunit, partial [Trametes
            pubescens]
          Length = 508

 Score =  216 bits (551), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 162/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 196  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKF 255

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 256  RELPAGQNAVVAILCYSGYNQEDSVIMNQSSIDRGLFRSMYYRSYMDLEKKSGIQQLEEF 315

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  ++  R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 316  EKPTRDSTLRMKHGTYDKLEDDGLIAPGTNVNGEDIIIGKTAPIPPDSEELGQRTRTHTK 375

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++N+E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 376  RDVSTPLKSTEQGIIDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 435

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 436  RQEDMPFTAEGITPDIIINPHAI 458



 Score =  124 bits (310), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 58/130 (44%), Positives = 82/130 (63%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++N+E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 376  RDVSTPLKSTEQGIIDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 435

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 436  RQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVES 495

Query: 1303 VQEELIRHGY 1312
            V + L + GY
Sbjct: 496  VSQFLRQKGY 505



 Score = 88.2 bits (217), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 77/165 (46%), Gaps = 43/165 (26%)

Query: 691 RFDDFLYEGKIEYLDVNEGNDSHIAVS----------ESGIRPGVT-------------- 726
           ++D+ + +G IE LD  E     I ++           +GI P                 
Sbjct: 115 KWDNLIKDGVIELLDAEEEETVMICMTPEDLENSRLQSAGIDPHANDGELDPSARLKAPT 174

Query: 727 -----THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMG 781
                TH EI P  +LGVCA I              +P+P HNQ+PRNTYQ AMGKQAMG
Sbjct: 175 NAHTWTHCEIHPSMILGVCASI--------------IPFPDHNQSPRNTYQSAMGKQAMG 220

Query: 782 CIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
               N   R+DT+   L Y Q+P+  ++++    F +LPAG+  +
Sbjct: 221 IYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAV 265


>gi|189030780|gb|ABD59038.2| RNA polymerase II second largest subunit [Lepista irina]
          Length = 659

 Score =  216 bits (551), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 107/263 (40%), Positives = 160/263 (60%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 346  IIPFPDHNQSPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKF 405

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR    + K+   Q  +  
Sbjct: 406  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRIYMDLEKKSGVQXLEEF 465

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              PL +   R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 466  EKPLXDNTLRMKHGTYDKLEDDGLIAPGTGVAGEDIIIGKTAPIPPDSEELGQRTRTHTR 525

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ +R TR P+ GDKF+SRHGQKG IG+  
Sbjct: 526  RDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRSTRIPQTGDKFASRHGQKGTIGITY 585

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 586  RQEDMPFTAEGIVPDIIINPHAI 608



 Score =  124 bits (310), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 59/134 (44%), Positives = 82/134 (61%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++NSE    +K+ +R TR P+ GDKF+SRHGQKG IG+  
Sbjct: 526  RDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRSTRIPQTGDKFASRHGQKGTIGITY 585

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 586  RQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVES 645

Query: 1303 VQEELIRHGYNYQG 1316
            V   L + GY  +G
Sbjct: 646  VSTFLRQKGYQSRG 659



 Score =  109 bits (273), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 89/151 (58%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 40  EFNLALAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT 99

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++ PEG+ACGLVKNLALM  I+  +    +++ +  
Sbjct: 100 PLGREGKIAKPRQLHNTHWGMVCPAEAPEGQACGLVKNLALMACISVGSYSAPVIEFLEE 159

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E +        SS     VFVNG+  G+
Sbjct: 160 WGLESL---EENAHSSTPCTKVFVNGVWMGV 187



 Score = 90.5 bits (223), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 48/121 (39%), Positives = 66/121 (54%), Gaps = 14/121 (11%)

Query: 706 VNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQ 765
           VN+      A  ++GI     TH EI P  +LG+CA I              +P+P HNQ
Sbjct: 309 VNDAEFDPAARLKAGINSHTWTHCEIHPSMILGICASI--------------IPFPDHNQ 354

Query: 766 APRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQ 825
           +PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  
Sbjct: 355 SPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNA 414

Query: 826 I 826
           I
Sbjct: 415 I 415


>gi|88976158|gb|ABD59039.1| RNA polymerase II second largest subunit, partial [Macrolepiota
            dolichaula]
          Length = 882

 Score =  216 bits (551), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 522  IIPFPDHNQSPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKF 581

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 582  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEF 641

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  E   R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 642  EKPTRETTLRMKHGTYDKLEDDGLIAPGTGVRGEDIIIGKTAPIPPDSEELGQRTRTHTR 701

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 702  RDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITY 761

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PD+++NPH +
Sbjct: 762  RQEDMPFTAEGIVPDLVINPHAI 784



 Score =  183 bits (464), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 85/181 (46%), Positives = 118/181 (65%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 702  RDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITY 761

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PD+++NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 762  RQEDMPFTAEGIVPDLVINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVES 821

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
            V   L + GY  +G ++ Y G TG  L+A +Y GP YYQ+LKHMV DKIH+R+RGP  +L
Sbjct: 822  VSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMVDDKIHSRARGPVQIL 881

Query: 1363 T 1363
            T
Sbjct: 882  T 882



 Score =  111 bits (277), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 93/151 (61%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 216 EFNLALAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT 275

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM+ I+  +    +++ +  
Sbjct: 276 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSYSAPVIEFLEE 335

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E  ++      ++P    VFVNG+  G+
Sbjct: 336 WGLE--SLEENAHSTTPCTK-VFVNGVWMGV 363



 Score = 90.5 bits (223), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 47/121 (38%), Positives = 66/121 (54%), Gaps = 14/121 (11%)

Query: 706 VNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQ 765
            N+G+    A  ++G      TH EI P  +LG+CA I              +P+P HNQ
Sbjct: 485 ANDGDFDPAARLKAGTHAHTWTHCEIHPSMILGICASI--------------IPFPDHNQ 530

Query: 766 APRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQ 825
           +PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  
Sbjct: 531 SPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNA 590

Query: 826 I 826
           I
Sbjct: 591 I 591



 Score = 58.5 bits (140), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 14/114 (12%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A++ L    + H+ +       KA +   MI R++LA  +   LDDRD++G KRL+LAG 
Sbjct: 127 AQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAALERRELDDRDHFGKKRLDLAGP 186

Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYGN 555
           LL+ +F  +F++   ++           KE NL+  V    + +G  + L  GN
Sbjct: 187 LLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLALAVKHQTITNGLKYSLATGN 240


>gi|18977936|ref|NP_579293.1| DNA-directed RNA polymerase subunit B [Pyrococcus furiosus DSM 3638]
 gi|397652057|ref|YP_006492638.1| DNA-directed RNA polymerase subunit B [Pyrococcus furiosus COM1]
 gi|18893706|gb|AAL81688.1| DNA-directed RNA polymerase subunit b [Pyrococcus furiosus DSM 3638]
 gi|393189648|gb|AFN04346.1| DNA-directed RNA polymerase subunit B [Pyrococcus furiosus COM1]
          Length = 1117

 Score =  216 bits (551), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 109/263 (41%), Positives = 162/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            LVPYP HN APRNTY   M KQ++G    N + R+DT  + L Y Q P+V S+ ++   +
Sbjct: 651  LVPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGY 710

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
               PAGQN  +AV++Y GY++EDA+I+NKAS++RG  R   +R  +   K+Y     D+ 
Sbjct: 711  EDRPAGQNFVVAVLAYQGYNMEDAIIINKASIERGLARSTFFRTYEAEEKKYLGGQTDKF 770

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT---PEY 1090
              P       +    +R LD+DG++ P  ++  + VLV ++ P   +    + T    E 
Sbjct: 771  EIPDPTVRGYRGEKYYRNLDEDGLIFPESKVEGKDVLVGRTSPPRFLEERGLGTVSLQER 830

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            +E  V+ + S    ++KV+++   +   L+K+ +R  R PE+GDKF+SRHGQKGVIGLIV
Sbjct: 831  RETSVAVRPSEKGVVDKVIITETGDGTKLVKVTVRDLRIPELGDKFASRHGQKGVIGLIV 890

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMP+ ESGI PD+I+NPHG+
Sbjct: 891  PQEDMPWTESGIVPDLIVNPHGI 913



 Score =  205 bits (522), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 106/208 (50%), Positives = 142/208 (68%), Gaps = 1/208 (0%)

Query: 1163 CPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRP 1222
             P   +   GL G   + E +E  V+ + S    ++KV+++   +   L+K+ +R  R P
Sbjct: 812  SPPRFLEERGL-GTVSLQERRETSVAVRPSEKGVVDKVIITETGDGTKLVKVTVRDLRIP 870

Query: 1223 EIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKA 1282
            E+GDKF+SRHGQKGVIGLIV QEDMP+ ESGI PD+I+NPHG PSRMTVG+LIE + GK 
Sbjct: 871  ELGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLIEAIGGKV 930

Query: 1283 GLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQK 1342
              ++G   +GTAF G     +++EL   G+ + G++I Y GITG+ LEA I+ G +YYQ+
Sbjct: 931  ASLKGRRVDGTAFIGEPEEKLRKELEELGFKHTGREIMYDGITGKRLEADIFIGVIYYQR 990

Query: 1343 LKHMVQDKIHARSRGPRVVLTRQPTGRR 1370
            L HMV DKIHARSRGP  VLT+QPT  R
Sbjct: 991  LHHMVADKIHARSRGPVQVLTKQPTEGR 1018



 Score =  102 bits (254), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 54/146 (36%), Positives = 83/146 (56%), Gaps = 9/146 (6%)

Query: 188 IVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEK 247
           I N +R D +T  +  A+ TG W        R GV+Q+L R +Y+S L  + R+ S  ++
Sbjct: 391 IRNSIRPDVLTERIEHALATGAWP-----GGRTGVSQLLDRTNYMSTLSHLRRVTSPLDR 445

Query: 248 TRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIE 307
            +     R L G+ WG +CP++TPEG  CGLVKNLALM  ITT   E+ + + + ++GI 
Sbjct: 446 EQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITTAVPEEEIREYLMSLGIV 505

Query: 308 HIAMFNGEELSSPGVYLVFVNGILAG 333
            I +        P ++ V++NG+L G
Sbjct: 506 PIEVRR----PDPTLWRVYLNGVLIG 527



 Score = 83.6 bits (205), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 48/136 (35%), Positives = 71/136 (52%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G  ++ D +  G IEYLD  E  ++++A+    +     THLE+ P  +LG+ A      
Sbjct: 597 GRLKWSDLIKMGIIEYLDAEEEENAYVAMWPWEVTEE-HTHLELMPAAILGLPAS----- 650

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    LVPYP HN APRNTY   M KQ++G    N + R+DT  + L Y Q P+V 
Sbjct: 651 ---------LVPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLLHYPQIPLVN 701

Query: 808 SKTIRITNFHKLPAGK 823
           S+ ++   +   PAG+
Sbjct: 702 SRIMKAVGYEDRPAGQ 717



 Score = 43.1 bits (100), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 37/59 (62%), Gaps = 1/59 (1%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           D W ++ S+ +EKGLV+ H+DS++ FI   +++++     I  D+ P F +K+  I VG
Sbjct: 13  DLWIVMESYWQEKGLVRQHLDSYNAFIERGLQEVVNEFGGIKPDI-PDFEVKFGKIRVG 70


>gi|357216615|gb|AET71041.1| RNA polymerase II second largest subunit, partial [Trametes
            versicolor]
          Length = 639

 Score =  216 bits (551), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 162/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 327  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKF 386

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 387  RELPAGQNAVVAILCYSGYNQEDSVIMNQSSIDRGLFRSMYYRSYMDLEKKSGIQQLEEF 446

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  ++  R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 447  EKPTRDSTLRMKHGTYDKLEDDGLIAPGTNVNGEDIIIGKTAPIPPDSEELGQRTRTHTK 506

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++N+E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 507  RDVSTPLKSTEQGIIDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 566

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 567  RQEDMPFTAEGITPDIIINPHAI 589



 Score =  124 bits (311), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 58/130 (44%), Positives = 82/130 (63%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++N+E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 507  RDVSTPLKSTEQGIIDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 566

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 567  RQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVES 626

Query: 1303 VQEELIRHGY 1312
            V + L + GY
Sbjct: 627  VSQFLRQKGY 636



 Score =  109 bits (272), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 93/151 (61%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F +   ++ +TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 16  EFQLGLAVKHNTITNGLKYSLATGNWGDQKKTMSSKAGVSQVLNRYTYASTLSHLRRCNT 75

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNL+LM+ I+  +    +++ +  
Sbjct: 76  PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSCISVGSLSAPVIEFLEE 135

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E  ++      S+P    VFVNG+  G+
Sbjct: 136 WGLE--SLEENAHSSTPCTK-VFVNGVWMGV 163



 Score = 87.4 bits (215), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 76/162 (46%), Gaps = 43/162 (26%)

Query: 691 RFDDFLYEGKIEYLDVNEGNDSHIAVS----------ESGIRPG---------------- 724
           ++D+ + +G IE LD  E     I ++           +GI P                 
Sbjct: 246 KWDNLIKDGVIELLDAEEEETVMICMTPEDLENSRLQSAGIDPHENDGELDPSARLKAPT 305

Query: 725 ---VTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMG 781
                TH EI P  +LGVCA I              +P+P HNQ+PRNTYQ AMGKQAMG
Sbjct: 306 NAHTWTHCEIHPSMILGVCASI--------------IPFPDHNQSPRNTYQSAMGKQAMG 351

Query: 782 CIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
               N   R+DT+   L Y Q+P+  ++++    F +LPAG+
Sbjct: 352 IYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQ 393


>gi|320172596|gb|ADW24181.1| RNA polymerase II second largest subunit [Neolentinus lepideus]
          Length = 655

 Score =  216 bits (551), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 107/263 (40%), Positives = 164/263 (62%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 351  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLRF 410

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 411  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEF 470

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS-AISMATPEY-- 1090
              P  +   R     +  L+ DG++APG  +    +++ K+ P    S  +   T  +  
Sbjct: 471  EKPTRDTTLRMKHGTYDKLEDDGLIAPGTGVTGDDIIIGKTAPIPPDSEELGQRTRSHTR 530

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V  + K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 531  RDVSTALKSTEQGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITY 590

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 591  RQEDMPFTAEGITPDIIINPHAI 613



 Score =  122 bits (306), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 55/113 (48%), Positives = 76/113 (67%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V  + K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 531  RDVSTALKSTEQGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITY 590

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAF 1295
             QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F
Sbjct: 591  RQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPF 643



 Score =  110 bits (276), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 94/151 (62%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++ +TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 45  EFNLSLAVKHNTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT 104

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM+ I+  +    +++ +  
Sbjct: 105 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSLSAPVIEFLEE 164

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E  ++      ++P    VFVNG+  G+
Sbjct: 165 WGLE--SLEENAHSATPCTK-VFVNGVWMGV 192



 Score = 86.7 bits (213), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 56/156 (35%), Positives = 81/156 (51%), Gaps = 22/156 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LGVCA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 335 THCEIHPSMILGVCASI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYLTN 380

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQISPGGAEELTARESCHEVLKI 846
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I    A    +  +  + + +
Sbjct: 381 FLVRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNAIV---AILCYSGYNQEDSVIM 437

Query: 847 ISFSISVAVFDSVWLG-----DVKQGVHQLSEEKEP 877
              SI   +F S++       + K GV QL E ++P
Sbjct: 438 NQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKP 473


>gi|357216621|gb|AET71044.1| RNA polymerase II second largest subunit, partial [Trametes
            suaveolens]
          Length = 631

 Score =  216 bits (551), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 162/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 346  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKF 405

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 406  RELPAGQNAVVAILCYSGYNQEDSVIMNQSSIDRGLFRSMYYRSYMDLEKKSGIQQLEEF 465

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  ++  R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 466  EKPTRDSTLRMKHGTYDKLEDDGLIAPGTNVNGEDIIIGKTAPIPPDSEELGQRTRTHTK 525

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++N+E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 526  RDVSTPLKSTEQGIIDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 585

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 586  RQEDMPFTAEGITPDIIINPHAI 608



 Score =  117 bits (292), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 52/106 (49%), Positives = 72/106 (67%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++N+E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 526  RDVSTPLKSTEQGIIDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 585

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGN 1288
             QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN
Sbjct: 586  RQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLSKVATLIGN 631



 Score =  110 bits (274), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 94/151 (62%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++ +TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 40  EFNLGLAVKHNTITNGLKYSLATGNWGDQKKTMSSKAGVSQVLNRYTYASTLSHLRRCNT 99

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNL+LM+ I+  +    +++ +  
Sbjct: 100 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSCISVGSLSAPVIEFLEE 159

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E  ++      S+P    VFVNG+  G+
Sbjct: 160 WGLE--SLEENAHSSTPCTK-VFVNGVWMGV 187



 Score = 87.4 bits (215), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 76/162 (46%), Gaps = 43/162 (26%)

Query: 691 RFDDFLYEGKIEYLDVNEGNDSHIAVS----------ESGIRPGVT-------------- 726
           ++D+ + +G IE LD  E     I ++           +GI P                 
Sbjct: 265 KWDNLIKDGVIELLDAEEEETVIICMTPEDLENSRLQAAGIDPHANDGELDPSARLKAPT 324

Query: 727 -----THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMG 781
                TH EI P  +LGVCA I              +P+P HNQ+PRNTYQ AMGKQAMG
Sbjct: 325 HAHTWTHCEIHPSMILGVCASI--------------IPFPDHNQSPRNTYQSAMGKQAMG 370

Query: 782 CIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
               N   R+DT+   L Y Q+P+  ++++    F +LPAG+
Sbjct: 371 IYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQ 412


>gi|365927720|gb|AEX07764.1| RNA polymerase II subunit 2 [Junghuhnia nitida]
          Length = 353

 Score =  216 bits (551), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 11   IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLRF 70

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 71   RELPAGQNAIVAILCYSGYNQEDSVIMNQSSVDRGLFRSMYYRSYMDLEKKSGVQQLEEF 130

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  E   R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 131  EKPTRENTLRMKHGTYDKLEDDGLIAPGTNVNGEDIIIGKTAPIPPDSEELGQRTKTHSR 190

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++N+E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 191  RDVSTPLKSTESGIIDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGIAY 250

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDI++NPH +
Sbjct: 251  RQEDMPFTAEGITPDIVINPHAI 273



 Score =  154 bits (390), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 73/163 (44%), Positives = 101/163 (61%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++N+E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 191  RDVSTPLKSTESGIIDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGIAY 250

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDI++NPH  PSRMT+G L+E L  K   + G   + T F    +  
Sbjct: 251  RQEDMPFTAEGITPDIVINPHAIPSRMTIGHLVECLLSKVATLLGQEGDATPFTDLTVES 310

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKH 1345
            V   L   GY  +G +I Y G TG  L+A +Y GP YYQ+LKH
Sbjct: 311  VSHFLRDKGYQSRGLEIMYHGHTGRKLQAQVYLGPTYYQRLKH 353



 Score = 79.3 bits (194), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 77/150 (51%), Gaps = 22/150 (14%)

Query: 733 PFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRID 792
           P  +LGVCA I              +P+P HNQ+PRNTYQ AMGKQAMG    N   R+D
Sbjct: 1   PSMILGVCASI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMD 46

Query: 793 TLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQISPGGAEELTARESCHEVLKIISFSIS 852
           T+   L Y Q+P+  ++++    F +LPAG+  I    A    +  +  + + +   S+ 
Sbjct: 47  TMANILYYPQKPLATTRSMEYLRFRELPAGQNAIV---AILCYSGYNQEDSVIMNQSSVD 103

Query: 853 VAVFDSVWLG-----DVKQGVHQLSEEKEP 877
             +F S++       + K GV QL E ++P
Sbjct: 104 RGLFRSMYYRSYMDLEKKSGVQQLEEFEKP 133


>gi|94410908|gb|ABF18575.1| RNA polymerase II second largest subunit, partial [Gloiocephala
            aquatica]
          Length = 685

 Score =  216 bits (551), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 108/265 (40%), Positives = 162/265 (61%), Gaps = 7/265 (2%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 345  IIPFPDHNQSPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKF 404

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   V K+   Q  +  
Sbjct: 405  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDVEKKSGIQALEEF 464

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSA-----ISMATP 1088
              P  E+  R     +  L+ DG++APG  +    +++ K+ P    S        M T 
Sbjct: 465  EKPQRESTLRMKHGTYDKLEDDGLIAPGTGVVGEDIIIGKTAPIPPDSEELGQRTRMHT- 523

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
              ++V    K +    +++VL+++NS+    +K+ +R TR P+ GDKF+SRHGQKG IG+
Sbjct: 524  -RRDVSTPLKSTESGIIDQVLITTNSDGQKFVKVRVRATRIPQTGDKFASRHGQKGTIGI 582

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
               QEDMPF   GI PDII+NPH +
Sbjct: 583  TYRQEDMPFTSEGIVPDIIINPHAI 607



 Score =  150 bits (378), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 71/166 (42%), Positives = 102/166 (61%)

Query: 1178 RITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV 1237
            R+   ++V    K +    +++VL+++NS+    +K+ +R TR P+ GDKF+SRHGQKG 
Sbjct: 520  RMHTRRDVSTPLKSTESGIIDQVLITTNSDGQKFVKVRVRATRIPQTGDKFASRHGQKGT 579

Query: 1238 IGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGG 1297
            IG+   QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + G+  + T F  
Sbjct: 580  IGITYRQEDMPFTSEGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGHEGDATPFTD 639

Query: 1298 TKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKL 1343
              +  V   L + GY  +G ++ Y G TG  L+A +Y GP YYQ+L
Sbjct: 640  LTVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRL 685



 Score =  107 bits (268), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 90/151 (59%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   +++ TI N L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 40  EFNVNVGVKRQTIXNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT 99

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM  I+  +    +++ +  
Sbjct: 100 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEE 159

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E +        S+     VFVNG+  G+
Sbjct: 160 WGLESL---EENAHSTTPFTKVFVNGVWMGV 187



 Score = 90.9 bits (224), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 48/121 (39%), Positives = 66/121 (54%), Gaps = 14/121 (11%)

Query: 706 VNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQ 765
           +NEG     A  ++G      TH EI P  +LG+CA I              +P+P HNQ
Sbjct: 308 MNEGEFDPAARLKAGTNAHTWTHCEIHPSMILGICASI--------------IPFPDHNQ 353

Query: 766 APRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQ 825
           +PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  
Sbjct: 354 SPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNA 413

Query: 826 I 826
           I
Sbjct: 414 I 414


>gi|45545303|gb|AAS67499.1| DNA-dependent RNA polymerase II second largest subunit, partial
            [Aspergillus fumigatus]
          Length = 936

 Score =  216 bits (551), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 109/266 (40%), Positives = 166/266 (62%), Gaps = 9/266 (3%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R++T+   L Y Q+P+  ++++    F
Sbjct: 561  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSMEFLRF 620

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR      K       +R 
Sbjct: 621  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMVGLTVVERF 680

Query: 1034 LGPLLEADT---RKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAISMATPE 1089
              P + +DT   RK  Y    LD+DGI+APG ++    +++ K+ P       +   T  
Sbjct: 681  EKP-MRSDTIGMRKGTYDK--LDEDGIIAPGVRVSGEDIIIGKTAPLAPEAEELGQRTKA 737

Query: 1090 YKEVPVS--YKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
            + ++ VS   + +    +++VLVS++++D   +K+ +R T+ P+IGDKF+SRHGQKG IG
Sbjct: 738  HTKLDVSTPLRSTENGIVDQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIG 797

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            +   QEDMPF   G+ PD+I+NPH +
Sbjct: 798  ITYRQEDMPFTREGVSPDLIINPHAI 823



 Score =  182 bits (461), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 83/176 (47%), Positives = 116/176 (65%)

Query: 1197 LEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICP 1256
            +++VLVS++++D   +K+ +R T+ P+IGDKF+SRHGQKG IG+   QEDMPF   G+ P
Sbjct: 755  VDQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRQEDMPFTREGVSP 814

Query: 1257 DIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQG 1316
            D+I+NPH  PSRMT+  LIE    K   + G   + T F    +  +   L  HGY  +G
Sbjct: 815  DLIINPHAIPSRMTIAHLIECQLSKVSALRGFEGDATPFTDVTVDSISRLLREHGYQSRG 874

Query: 1317 KDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
             ++ Y+G TG  L A ++ GP YYQ+L+HMV DKIHAR+RGP  +LTRQP   R +
Sbjct: 875  FEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRAR 930



 Score =  112 bits (281), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 56/144 (38%), Positives = 85/144 (59%), Gaps = 3/144 (2%)

Query: 192 MRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRK 250
           ++  T+T  L  A+ TGNW   ++    + GV+QVLSR +Y S L  + R N+   +  K
Sbjct: 246 IKASTLTGGLKYALATGNWGEQKKAASSKAGVSQVLSRYTYASTLSHLRRTNTPIGRDGK 305

Query: 251 VSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIA 310
           ++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT     + ++  M    +E + 
Sbjct: 306 IAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLE 365

Query: 311 MFNGEELSSPGVYLVFVNGILAGI 334
            F  E   +P    VFVNG+  G+
Sbjct: 366 EF--EPQVTPNATKVFVNGVWVGV 387



 Score = 88.6 bits (218), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LGVCA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 545 THCEIHPSMILGVCASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 590

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R++T+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 591 FDQRMETMANILYYPQKPLATTRSMEFLRFRELPAGQNAI 630



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 56/115 (48%), Gaps = 16/115 (13%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMV-LALSDPDMLDDRDYYGNKRLELAG 514
           AR+ +    + HI         KA +L  M+ R++  AL   D +DDRD++G KRL+LAG
Sbjct: 150 AREIMQKELLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRD-VDDRDHFGKKRLDLAG 208

Query: 515 SLLSLMFEDVFKRFNSELK-------ETNLSGVVN-------LVSGWWFELKYGN 555
            LL+ +F  +F R   +L+       ETN    +N       L  G  + L  GN
Sbjct: 209 PLLANLFRVLFTRVTRDLQRYVQRCVETNREIYLNIGIKASTLTGGLKYALATGN 263


>gi|88976114|gb|ABD59033.1| RNA polymerase II second largest subunit, partial [Clavaria
            inaequalis]
          Length = 667

 Score =  216 bits (550), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 109/263 (41%), Positives = 163/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 337  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKF 396

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 397  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEF 456

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS-AISMATPEY-- 1090
              P  E   R     +  L+ DG+VAPG ++    +++ K+ P    S  +   T  +  
Sbjct: 457  EKPTRETTLRMKHGSYDKLESDGLVAPGTRVRGDDIIIGKTAPIPPDSEELGQRTRSHTK 516

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ LR  R P+IGDKF+SRHGQKG IG+  
Sbjct: 517  RDVSTPLKSTENGVIDQVLITTNSEGQKFVKVRLRSIRVPQIGDKFASRHGQKGTIGITY 576

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 577  RQEDMPFTAEGIVPDIIINPHAI 599



 Score =  137 bits (345), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 66/151 (43%), Positives = 92/151 (60%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++NSE    +K+ LR  R P+IGDKF+SRHGQKG IG+  
Sbjct: 517  RDVSTPLKSTENGVIDQVLITTNSEGQKFVKVRLRSIRVPQIGDKFASRHGQKGTIGITY 576

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 577  RQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVES 636

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYI 1333
            V   L + GY  +G ++ Y G TG  L+A +
Sbjct: 637  VSTFLRQKGYQSRGLEVMYHGHTGRKLQAQV 667



 Score =  110 bits (276), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 92/151 (60%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 31  EFNLALAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT 90

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM  I+  +    +++ +  
Sbjct: 91  PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEE 150

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E  ++      ++P    VFVNG+  G+
Sbjct: 151 WGLE--SLEENAHSTTPCTK-VFVNGVWMGV 178



 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 85/165 (51%), Gaps = 22/165 (13%)

Query: 718 ESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGK 777
           ++GI     TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGK
Sbjct: 312 KAGINAHTWTHCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGK 357

Query: 778 QAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQISPGGAEELTAR 837
           QAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  I    A    + 
Sbjct: 358 QAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIV---AILCYSG 414

Query: 838 ESCHEVLKIISFSISVAVFDSVWLG-----DVKQGVHQLSEEKEP 877
            +  + + +   SI   +F S++       + K GV QL E ++P
Sbjct: 415 YNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKP 459


>gi|357216647|gb|AET71057.1| RNA polymerase II second largest subunit, partial [Earliella
            scabrosa]
          Length = 658

 Score =  216 bits (550), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 162/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 345  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLRF 404

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 405  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEF 464

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  L++DG++APG  +    +++ K+ P    S        T   
Sbjct: 465  EKPTRDTTLRMKHGTYDKLEEDGLIAPGTNVNGEDIIIGKTAPIPPDSEELGQRTRTHTK 524

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++N+E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 525  RDVSTPLKSTEQGIVDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 584

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 585  RQEDMPFTAEGITPDIIINPHAI 607



 Score =  125 bits (313), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 59/134 (44%), Positives = 84/134 (62%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++N+E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 525  RDVSTPLKSTEQGIVDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 584

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 585  RQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLSKLATLIGNEGDATPFTDLTVES 644

Query: 1303 VQEELIRHGYNYQG 1316
            V + L + GY  +G
Sbjct: 645  VSKFLRQKGYQSRG 658



 Score =  108 bits (271), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 92/151 (60%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F +   ++ +TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 40  EFVLSLAVKHNTITNGLKYSLATGNWGDQKKSMSAKAGVSQVLNRYTYASTLSHLRRCNT 99

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNL+LM+ I+       +++ +  
Sbjct: 100 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSCISVGTLSAPVIEFLEE 159

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E  ++      S+P    VFVNG+  G+
Sbjct: 160 WGLE--SLEENAHASTPCTK-VFVNGVWMGV 187



 Score = 88.2 bits (217), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 88/176 (50%), Gaps = 22/176 (12%)

Query: 707 NEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQA 766
           +E ND   A  ++       TH EI P  +LGVCA I              +P+P HNQ+
Sbjct: 309 DEENDDPSARLKAPTMAHTWTHCEIHPSMILGVCASI--------------IPFPDHNQS 354

Query: 767 PRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
           PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 355 PRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNAI 414

Query: 827 SPGGAEELTARESCHEVLKIISFSISVAVFDSVWLG-----DVKQGVHQLSEEKEP 877
               A    +  +  + + +   SI   +F S++       + K GV QL E ++P
Sbjct: 415 V---AILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKP 467


>gi|357216625|gb|AET71046.1| RNA polymerase II second largest subunit, partial [Trametes villosa]
          Length = 641

 Score =  216 bits (550), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 162/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 346  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLRF 405

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 406  RELPAGQNAVVAILCYSGYNQEDSVIMNQSSIDRGLFRSMYYRSYMDLEKKSGIQQLEEF 465

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  ++  R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 466  EKPTRDSTLRMKHGTYDKLEDDGLIAPGTNVNGEDIIIGKTAPIPPDSEELGQRTRTHTK 525

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++N+E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 526  RDVSTPLKSTEQGIIDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 585

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 586  RQEDMPFTAEGITPDIIINPHAI 608



 Score =  120 bits (301), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 54/113 (47%), Positives = 75/113 (66%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++N+E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 526  RDVSTPLKSTEQGIIDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 585

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAF 1295
             QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F
Sbjct: 586  RQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPF 638



 Score =  110 bits (275), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 94/151 (62%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++ +TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 40  EFNLSLAVKHNTITNGLKYSLATGNWGDQKKTMSSKAGVSQVLNRYTYASTLSHLRRCNT 99

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNL+LM+ I+  +    +++ +  
Sbjct: 100 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSCISVGSLSAPVIEFLEE 159

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E  ++      S+P    VFVNG+  G+
Sbjct: 160 WGLE--SLEENAHSSTPCTK-VFVNGVWMGV 187



 Score = 87.0 bits (214), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 76/162 (46%), Gaps = 43/162 (26%)

Query: 691 RFDDFLYEGKIEYLDVNEGNDSHIAVS----------ESGIRPGVT-------------- 726
           ++D+ + +G IE LD  E     I ++           +G+ P                 
Sbjct: 265 KWDNLIKDGVIELLDAEEEETVMICMTPEDLENSRLQAAGLDPHANDGEVDPSARLKAPT 324

Query: 727 -----THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMG 781
                TH EI P  +LGVCA I              +P+P HNQ+PRNTYQ AMGKQAMG
Sbjct: 325 NAHTWTHCEIHPSMILGVCASI--------------IPFPDHNQSPRNTYQSAMGKQAMG 370

Query: 782 CIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
               N   R+DT+   L Y Q+P+  ++++    F +LPAG+
Sbjct: 371 IYLTNFLVRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQ 412


>gi|56694376|gb|AAW22928.1| RNA polymerase II second largest subunit [Acorus gramineus]
          Length = 536

 Score =  216 bits (550), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 111/270 (41%), Positives = 167/270 (61%), Gaps = 19/270 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 208  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHF 267

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L +R+ +           ++ 
Sbjct: 268  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR---------DEEKK 318

Query: 1034 LGPLLEADTRKPV------YRHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            +G L++ D  +P        RH +   LD DG+  PG ++    V++ K+ P     A  
Sbjct: 319  MGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQEEAQG 378

Query: 1085 MATPEYK-EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1143
             A+   K +   S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQK
Sbjct: 379  QASRYTKRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQK 438

Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G +G+   QEDMP+   GI PDII+NPH +
Sbjct: 439  GTVGMTYTQEDMPWTVEGITPDIIVNPHAI 468



 Score =  129 bits (325), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 62/147 (42%), Positives = 91/147 (61%)

Query: 1187 VSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQED 1246
             S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   QED
Sbjct: 390  TSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 449

Query: 1247 MPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEE 1306
            MP+   GI PDII+NPH  PSRMT+G+LIE + GK     G   + T F    + ++ + 
Sbjct: 450  MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 509

Query: 1307 LIRHGYNYQGKDIFYSGITGEALEAYI 1333
            L + GY  +G +  Y+G TG  L A I
Sbjct: 510  LHKCGYQMRGFETMYNGHTGRKLTAMI 536



 Score = 98.2 bits (243), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 54/141 (38%), Positives = 78/141 (55%), Gaps = 24/141 (17%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGI----------RPGVTTHLEIAPFTLLGVCA 741
           + + + +G IEY+D  E   + I+++ + +             + TH EI P  +LGVCA
Sbjct: 147 WHELVTKGFIEYIDTEEEETTMISMTINDLINARQNPEEAYSSMYTHCEIHPSLILGVCA 206

Query: 742 GIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYA 801
            I              +P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y 
Sbjct: 207 SI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYP 252

Query: 802 QRPMVESKTIRITNFHKLPAG 822
           Q+P+V ++ +   +F +LPAG
Sbjct: 253 QKPLVTTRAMEHLHFRQLPAG 273



 Score = 67.4 bits (163), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 34/76 (44%), Positives = 47/76 (61%), Gaps = 8/76 (10%)

Query: 262 WGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMFNGEELSS-- 319
           WGM+CP++TPEG+ACGLVKNLALM ++T  +    +L+ +     E  +  N EE+S   
Sbjct: 1   WGMMCPAETPEGQACGLVKNLALMVYVTVGSAANPILEFL-----EEWSTENFEEISPAV 55

Query: 320 -PGVYLVFVNGILAGI 334
            P    +FVNG   GI
Sbjct: 56  IPQATKIFVNGCWVGI 71


>gi|357216623|gb|AET71045.1| RNA polymerase II second largest subunit, partial [Trametes hirsuta]
          Length = 657

 Score =  216 bits (550), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 162/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 346  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLRF 405

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 406  RELPAGQNAVVAILCYSGYNQEDSVIMNQSSIDRGLFRSMYYRSYMDLEKKSGIQQLEEF 465

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  ++  R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 466  EKPTRDSTLRMKHGTYDKLEDDGLIAPGTNVNGEDIIIGKTAPIPPDSEELGQRTRTHTK 525

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++N+E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 526  RDVSTPLKSTEQGIIDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 585

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 586  RQEDMPFTAEGITPDIIINPHAI 608



 Score =  124 bits (311), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 58/130 (44%), Positives = 82/130 (63%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++N+E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 526  RDVSTPLKSTEQGIIDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 585

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 586  RQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVES 645

Query: 1303 VQEELIRHGY 1312
            V + L + GY
Sbjct: 646  VSQFLRQKGY 655



 Score =  110 bits (275), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 94/151 (62%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++ +TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 40  EFNLSLAVKHNTITNGLKYSLATGNWGDQKKTMSSKAGVSQVLNRYTYASTLSHLRRCNT 99

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNL+LM+ I+  +    +++ +  
Sbjct: 100 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSCISVGSLSAPVIEFLEE 159

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E  ++      S+P    VFVNG+  G+
Sbjct: 160 WGLE--SLEENAHSSTPCTK-VFVNGVWMGV 187



 Score = 87.8 bits (216), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 76/162 (46%), Gaps = 43/162 (26%)

Query: 691 RFDDFLYEGKIEYLDVNEGNDSHIAVS----------ESGIRPGVT-------------- 726
           ++D+ + +G IE LD  E     I ++           +GI P                 
Sbjct: 265 KWDNLIKDGVIELLDAEEEETVMICMTPEDLENSRLQAAGIDPHANDGEVDPSARLKAPT 324

Query: 727 -----THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMG 781
                TH EI P  +LGVCA I              +P+P HNQ+PRNTYQ AMGKQAMG
Sbjct: 325 NAHTWTHCEIHPSMILGVCASI--------------IPFPDHNQSPRNTYQSAMGKQAMG 370

Query: 782 CIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
               N   R+DT+   L Y Q+P+  ++++    F +LPAG+
Sbjct: 371 IYLTNFLVRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQ 412


>gi|89274898|gb|ABD65890.1| RNA polymerase II second largest subunit, partial [Polyporus
            squamosus]
          Length = 898

 Score =  216 bits (550), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 107/263 (40%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 527  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLRF 586

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 587  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEF 646

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  E   R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 647  EKPTRETTLRMKHGTYDKLENDGLIAPGTNVNGEDIIIGKTAPIPPDSEELGQRTRTHTK 706

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++N+E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 707  RDVSTPLKSTEQGIVDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 766

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 767  RQEDMPFTAEGITPDIIINPHAI 789



 Score =  190 bits (482), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 90/188 (47%), Positives = 122/188 (64%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++N+E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 707  RDVSTPLKSTEQGIVDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 766

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 767  RQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLSKLATLIGNEGDATPFTNLTVET 826

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
            V   L + GY  +G ++ Y G TG  L+A +Y GP YYQ+LKHMV DKIH+R+RGP  +L
Sbjct: 827  VSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMVDDKIHSRARGPVQIL 886

Query: 1363 TRQPTGRR 1370
            TRQP   R
Sbjct: 887  TRQPVEGR 894



 Score =  111 bits (277), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 94/151 (62%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++ +TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 221 EFNLSLAVKHNTITNGLKYSLATGNWGDQKKSMSAKAGVSQVLNRYTYASTLSHLRRCNT 280

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNL+LM+ I+  +    +++ +  
Sbjct: 281 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSCISVGSLSAPVIEFLEE 340

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E  ++      S+P    VFVNG+  G+
Sbjct: 341 WGLE--SLEENTHASTPCTK-VFVNGVWMGV 368



 Score = 88.2 bits (217), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/164 (34%), Positives = 76/164 (46%), Gaps = 43/164 (26%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVS----------ESGIRPGVT--------------- 726
           +D+ + EG IE LD  E     I ++           +GI P                  
Sbjct: 447 WDNMIKEGVIELLDAEEEETVMICMTPEDLENSRLQAAGIDPHADEEHVDPSARLKAPTF 506

Query: 727 ----THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGC 782
               TH EI P  +LGVCA I              +P+P HNQ+PRNTYQ AMGKQAMG 
Sbjct: 507 SHTWTHCEIHPSMILGVCASI--------------IPFPDHNQSPRNTYQSAMGKQAMGI 552

Query: 783 IGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              N   R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 553 YLTNFLVRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNAI 596



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 58/114 (50%), Gaps = 14/114 (12%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A++ L    + H+ +       KA +   MI R++LA  +   LDDRD++G KRL+LAG 
Sbjct: 132 AQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAALERRDLDDRDHFGKKRLDLAGP 191

Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYGN 555
           LL+ +F  +F++   ++           KE NLS  V    + +G  + L  GN
Sbjct: 192 LLANLFRMLFRKLTKDVYRHLQKCVEMNKEFNLSLAVKHNTITNGLKYSLATGN 245


>gi|18312085|ref|NP_558752.1| DNA-directed RNA polymerase subunit B [Pyrobaculum aerophilum str.
            IM2]
 gi|18159514|gb|AAL62934.1| DNA-directed RNA polymerase subunit B (rpoB) [Pyrobaculum aerophilum
            str. IM2]
          Length = 1127

 Score =  216 bits (550), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 107/266 (40%), Positives = 167/266 (62%), Gaps = 10/266 (3%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++PY  HNQ+PRN Y+ AM KQ++G    N   ++D+  + L Y +RP+V ++ + +  +
Sbjct: 661  IIPYIEHNQSPRNQYEAAMAKQSLGLPQSNFLYKLDSRGHMLYYPERPIVTTRGLELIGY 720

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             K PAGQNA +A+++Y+GY+IEDA+I+NKAS++RG  R + YR  +   ++YP    DRI
Sbjct: 721  SKRPAGQNAVVALLTYTGYNIEDAVILNKASVERGMFRSVFYRTYETEEQKYPGGEEDRI 780

Query: 1034 LGPLLEADTRKPVYR----HRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMA--T 1087
              P    D+    YR    +  LD+DGI  P   +   +VL+ K+ P    + +      
Sbjct: 781  EIP----DSSVKGYRGPEAYSHLDEDGIAPPEVYVSSNEVLIGKTSPPRFYTTLEAERIL 836

Query: 1088 PEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
             E ++  V+ +      ++KV+++ + E   L+K+ LR+ R PE+GDKF+SRHGQKGV+G
Sbjct: 837  KERRDASVAVRRGEKGIVDKVIITESPEGNKLVKVRLRELRVPELGDKFASRHGQKGVVG 896

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            +++ QEDMPF E GI PDII+NPH L
Sbjct: 897  MLLRQEDMPFTEDGIVPDIIVNPHAL 922



 Score =  209 bits (531), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 100/192 (52%), Positives = 136/192 (70%)

Query: 1179 ITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVI 1238
            + E ++  V+ +      ++KV+++ + E   L+K+ LR+ R PE+GDKF+SRHGQKGV+
Sbjct: 836  LKERRDASVAVRRGEKGIVDKVIITESPEGNKLVKVRLRELRVPELGDKFASRHGQKGVV 895

Query: 1239 GLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGT 1298
            G+++ QEDMPF E GI PDII+NPH  PSRMTV +L+E +AGK G   G   + T F G 
Sbjct: 896  GMLLRQEDMPFTEDGIVPDIIVNPHALPSRMTVAQLLESIAGKLGASTGQLIDATPFEGV 955

Query: 1299 KLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGP 1358
            K  D+++ L++ GY + GK++ YSGITGE L A I+ G VYYQKL HMV DKIHAR+RGP
Sbjct: 956  KEEDLRKLLLKLGYKWDGKEVMYSGITGERLVADIFIGIVYYQKLHHMVADKIHARARGP 1015

Query: 1359 RVVLTRQPTGRR 1370
              +LTRQPT  R
Sbjct: 1016 VQILTRQPTEGR 1027



 Score =  104 bits (260), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 86/254 (33%), Positives = 125/254 (49%), Gaps = 28/254 (11%)

Query: 97  TMVTDETSKLKDSPEIRDKWKLVLSFLKEKGLVKPHI-----DSFDYFINVEIKKLMQAN 151
           T V DE    K   EIR K  L+L  +  KGLV+ H+     D  D+  N  ++ +    
Sbjct: 317 TTVPDE----KKQQEIRLKKALMLGQIV-KGLVELHLGRRKPDDKDHVGNKRVRLVGDLM 371

Query: 152 ANIYSDVDPLFYLKYLDIHVG--IADKIIPKIKAAQFDIVNHMRQDTITNALTAAIQTGN 209
             ++  V   F L+ L   +    A   IP I+         +R D IT  +  A+ TGN
Sbjct: 372 TQLFRTVLKQF-LQELKSQLEKYYARGRIPHIQTI-------VRPDIITERVRQALATGN 423

Query: 210 WTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVSGPRSLQGSQWGMLCPSD 269
           W        + GV+Q+L R +Y+S L  + R+ S   +T+     R L  +QWG LC  +
Sbjct: 424 WV-----GGKTGVSQILDRTNYLSTLSYLRRVVSSLSRTQPHFEARDLHPTQWGRLCAVE 478

Query: 270 TPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMFNGEELSSPGVYLVFVNG 329
           TPEG+  GLVKNLAL+  ITT  DE  +  ++YN+G+  I     E +S   VYL   NG
Sbjct: 479 TPEGQNVGLVKNLALLAEITTGVDEGEVEHMLYNMGVIPILKAREEGVSGAEVYL---NG 535

Query: 330 ILAGITCHHKEVCK 343
            L G+  + +E+ K
Sbjct: 536 RLIGVHPNPEELAK 549



 Score = 88.2 bits (217), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 47/137 (34%), Positives = 75/137 (54%), Gaps = 19/137 (13%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVT--THLEIAPFTLLGVCAGIELLQYN 749
           +DD +  G +EYLD +E  ++HIA    G    +T  TH+EI P ++LG  A I      
Sbjct: 611 WDDLVKMGVVEYLDADEEENAHIATDPRG---NLTNYTHVEIIPSSILGAIASI------ 661

Query: 750 KRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESK 809
                   +PY  HNQ+PRN Y+ AM KQ++G    N   ++D+  + L Y +RP+V ++
Sbjct: 662 --------IPYIEHNQSPRNQYEAAMAKQSLGLPQSNFLYKLDSRGHMLYYPERPIVTTR 713

Query: 810 TIRITNFHKLPAGKCQI 826
            + +  + K PAG+  +
Sbjct: 714 GLELIGYSKRPAGQNAV 730



 Score = 43.1 bits (100), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 33/67 (49%)

Query: 340 EVCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIML 399
           EV  P I+ES        P E RLR+ TYSAP+ +        +        IG +PIM+
Sbjct: 78  EVGWPRIKESDGSESLIYPMEARLRNATYSAPLYLTATLYVDDEPYATETFYIGELPIMV 137

Query: 400 QSSKCVL 406
           +S +C L
Sbjct: 138 KSKRCNL 144



 Score = 42.0 bits (97), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 7/65 (10%)

Query: 472 NMRFKMKAMYLAVMIRRMV---LALSDPDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRF 528
            +R K KA+ L  +++ +V   L    PD   D+D+ GNKR+ L G L++ +F  V K+F
Sbjct: 327 EIRLK-KALMLGQIVKGLVELHLGRRKPD---DKDHVGNKRVRLVGDLMTQLFRTVLKQF 382

Query: 529 NSELK 533
             ELK
Sbjct: 383 LQELK 387


>gi|300394686|gb|ADK11881.1| DNA-directed RNA polymerase II subunit two, partial [Coniophora
            cerebella]
          Length = 685

 Score =  216 bits (550), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 349  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKF 408

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 409  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEF 468

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  ++ DG++APG  +    +++ K+ P    S        T   
Sbjct: 469  EKPTRDTTLRMKHGTYDKIEDDGLIAPGTGVSGEDIIIGKTAPIPPDSEELGQRTRTHTR 528

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 529  RDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITY 588

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 589  RQEDMPFTAEGIVPDIIINPHAI 611



 Score =  140 bits (353), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 67/152 (44%), Positives = 94/152 (61%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 529  RDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITY 588

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 589  RQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVES 648

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIY 1334
            V   L + GY  +G ++ Y G TG  L+A +Y
Sbjct: 649  VSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVY 680



 Score =  113 bits (283), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 58/151 (38%), Positives = 91/151 (60%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKM-ERQGVTQVLSRLSYISGLGMMTRINS 243
           +F+I   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 41  EFNISLAVKHQTITNGLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNT 100

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM+ I+  +    +++ +  
Sbjct: 101 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSFSAPVIEFLEE 160

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E +        SS     VFVNG+  G+
Sbjct: 161 WGLESL---EENAHSSAACTKVFVNGVWMGV 188



 Score = 90.1 bits (222), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 46/109 (42%), Positives = 62/109 (56%), Gaps = 14/109 (12%)

Query: 718 ESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGK 777
           +SGI     TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGK
Sbjct: 324 KSGINAHTWTHCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGK 369

Query: 778 QAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
           QAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 370 QAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAI 418


>gi|121709250|ref|XP_001272355.1| DNA-dependent RNA polymerase II RPB140 [Aspergillus clavatus NRRL 1]
 gi|119400504|gb|EAW10929.1| DNA-dependent RNA polymerase II RPB140 [Aspergillus clavatus NRRL 1]
          Length = 1257

 Score =  216 bits (550), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 108/266 (40%), Positives = 166/266 (62%), Gaps = 9/266 (3%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R++T+   L Y Q+P+  ++++    F
Sbjct: 786  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSMEFLRF 845

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R + YR      K       +R 
Sbjct: 846  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSMFYRTYTDTEKMVGLTVVERF 905

Query: 1034 LGPLLEADT---RKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAISMATPE 1089
              P + +DT   RK  Y    LD+DGI+APG ++    +++ K+ P       +   T  
Sbjct: 906  EKP-MRSDTIGMRKGTYDK--LDEDGIIAPGVRVSGEDIIIGKTAPLAPEAEELGQRTKA 962

Query: 1090 YKEVPVS--YKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
            + ++ VS   + +    +++VLVS++++D   +K+ +R T+ P+IGDKF+SRHGQKG IG
Sbjct: 963  HTKLDVSTPLRSTENGIVDQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIG 1022

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            +   QEDMPF   G+ PD+I+NPH +
Sbjct: 1023 ITYRQEDMPFTREGVVPDLIINPHAI 1048



 Score =  181 bits (459), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 83/176 (47%), Positives = 116/176 (65%)

Query: 1197 LEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICP 1256
            +++VLVS++++D   +K+ +R T+ P+IGDKF+SRHGQKG IG+   QEDMPF   G+ P
Sbjct: 980  VDQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRQEDMPFTREGVVP 1039

Query: 1257 DIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQG 1316
            D+I+NPH  PSRMT+  LIE    K   + G   + T F    +  V   L  HGY  +G
Sbjct: 1040 DLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTDVTVDSVSRLLREHGYQSRG 1099

Query: 1317 KDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
             ++ Y+G TG  + A ++ GP YYQ+L+HMV DKIHAR+RGP  +LTRQP   R +
Sbjct: 1100 FEVMYNGHTGRKMVAQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRAR 1155



 Score =  112 bits (280), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 56/144 (38%), Positives = 85/144 (59%), Gaps = 3/144 (2%)

Query: 192 MRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRK 250
           ++  T+T  L  A+ TGNW   ++    + GV+QVLSR +Y S L  + R N+   +  K
Sbjct: 469 IKASTLTGGLKYALATGNWGEQKKAASSKAGVSQVLSRYTYSSTLSHLRRTNTPIGRDGK 528

Query: 251 VSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIA 310
           ++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT     + ++  M    +E + 
Sbjct: 529 IAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLE 588

Query: 311 MFNGEELSSPGVYLVFVNGILAGI 334
            F  E   +P    VFVNG+  G+
Sbjct: 589 EF--EPQVTPNATKVFVNGVWVGV 610



 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/105 (41%), Positives = 59/105 (56%), Gaps = 14/105 (13%)

Query: 722 RPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMG 781
           R    TH EI P  +LGVCA I              +P+P HNQ+PRNTYQ AMGKQAMG
Sbjct: 765 RAHTWTHCEIHPSMILGVCASI--------------IPFPDHNQSPRNTYQSAMGKQAMG 810

Query: 782 CIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
               N   R++T+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 811 VFLTNFDQRMETMANILYYPQKPLATTRSMEFLRFRELPAGQNAI 855



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 56/115 (48%), Gaps = 16/115 (13%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMV-LALSDPDMLDDRDYYGNKRLELAG 514
           AR+ +    + HI         KA +L  M+ R++  AL   D +DDRD++G KRL+LAG
Sbjct: 373 AREIMQKELLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRD-VDDRDHFGKKRLDLAG 431

Query: 515 SLLSLMFEDVFKRFNSELK-------ETNLSGVVN-------LVSGWWFELKYGN 555
            LL+ +F  +F R   +L+       ETN    +N       L  G  + L  GN
Sbjct: 432 PLLANLFRVLFTRVTRDLQRYVQRCVETNREIYLNIGIKASTLTGGLKYALATGN 486


>gi|88601072|gb|ABD46532.1| RNA polymerase II second largest subunit, partial [Vuilleminia
            comedens]
          Length = 880

 Score =  216 bits (550), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 105/263 (39%), Positives = 165/263 (62%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 543  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKF 602

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+M YSGY+ ED++IMN++S+DRG  R + YR+   V K+   Q  ++ 
Sbjct: 603  RELPAGQNAIVAIMCYSGYNQEDSVIMNQSSVDRGLFRSMYYRSYMDVEKKSGVQELEKF 662

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS-AISMATPEY-- 1090
            + P  +   R     +  ++ DG++APG  +    +++ K+ P    S  +   T  +  
Sbjct: 663  MKPTRDTTLRMKHGTYDKIEDDGLIAPGTNVNGEDIIIGKTAPIPPDSEELGQRTRGHTR 722

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++N++    +K+ +R TR P+IGDKF+SRHGQKG +G+  
Sbjct: 723  RDVSTPLKSTEQGTVDQVLLTTNADGQKFVKVRIRSTRIPQIGDKFASRHGQKGTVGITY 782

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 783  RQEDMPFTAEGITPDIIINPHAI 805



 Score =  144 bits (364), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 69/158 (43%), Positives = 97/158 (61%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++N++    +K+ +R TR P+IGDKF+SRHGQKG +G+  
Sbjct: 723  RDVSTPLKSTEQGTVDQVLLTTNADGQKFVKVRIRSTRIPQIGDKFASRHGQKGTVGITY 782

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + G   + T F    +  
Sbjct: 783  RQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLSKVATLLGQEGDATPFTELTVES 842

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYY 1340
            V + L   GY  +G +I Y G TG+ L A IY GP YY
Sbjct: 843  VSKYLRDRGYQSRGLEIMYHGHTGKKLNAQIYLGPTYY 880



 Score =  110 bits (275), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 56/153 (36%), Positives = 91/153 (59%), Gaps = 4/153 (2%)

Query: 183 AAQFDIVNHMRQDTITNALTAAIQTGNWTIRRFKM-ERQGVTQVLSRLSYISGLGMMTRI 241
           + +F+I   ++ +TITN L  ++ TGNW  ++  M  + G +QVL+R +Y S L  + R 
Sbjct: 227 SKEFNISLAVKHNTITNGLKYSLATGNWGDQKKSMASKAGXSQVLNRYTYASTLSHLRRC 286

Query: 242 NSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIM 301
           N+   +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM+ I+  +    +++ +
Sbjct: 287 NTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSTISVGSYSAPVIEFL 346

Query: 302 YNIGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
              G+E +        S      VFVNG+  G+
Sbjct: 347 EEWGLESL---EENAHSQTPCTKVFVNGVWMGV 376



 Score = 92.8 bits (229), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 77/165 (46%), Gaps = 43/165 (26%)

Query: 691 RFDDFLYEGKIEYLDVNEGNDSHIAVS----------ESGIRPG---------------- 724
           +FD  + EG IEYLD  E     I ++          E G +P                 
Sbjct: 462 KFDSLVKEGVIEYLDAEEEETVMICMTPTELDRARRIELGAKPDDEDEEYDPAARIETAT 521

Query: 725 ---VTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMG 781
                TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG
Sbjct: 522 LAHTWTHCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMG 567

Query: 782 CIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
               N   R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 568 IYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAI 612



 Score = 58.5 bits (140), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 14/114 (12%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A++ L    + H+ +       KA +   MI R++LA  +   LDDRD++G KRL+LAG 
Sbjct: 140 AQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAALERRELDDRDHFGKKRLDLAGP 199

Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYGN 555
           LL+ +F  +F++   ++           KE N+S  V    + +G  + L  GN
Sbjct: 200 LLANLFRMLFRKLTRDVYRYLQKCVETSKEFNISLAVKHNTITNGLKYSLATGN 253


>gi|55583686|gb|AAV53362.1| RNA polymerase II second largest subunit [Fomitopsis pinicola]
          Length = 704

 Score =  216 bits (550), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 164/263 (62%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 334  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLRF 393

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  ++ 
Sbjct: 394  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSMYYRSYMDLEKKNGIQQLEKF 453

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS-AISMATPEY-- 1090
              P  E   R     +  L+ DG++APG  +    +++ K+ P    S  +   T  +  
Sbjct: 454  EKPTRETTLRMKHGTYDKLEDDGLIAPGTGVNGEDIIIGKTAPIPPDSEELGQRTRNHTR 513

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++N+E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 514  RDVSTPLKSTESGIIDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 573

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDI++NPH +
Sbjct: 574  RQEDMPFTAEGITPDIVINPHAI 596



 Score =  191 bits (484), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 89/188 (47%), Positives = 122/188 (64%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++N+E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 514  RDVSTPLKSTESGIIDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 573

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDI++NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 574  RQEDMPFTAEGITPDIVINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVDS 633

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
            V   L + GY  +G ++ Y G TG  L+A +Y GP YYQ+LKHMV DKIH+R+RGP  +L
Sbjct: 634  VSGFLRQRGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMVDDKIHSRARGPVQIL 693

Query: 1363 TRQPTGRR 1370
            TRQP   R
Sbjct: 694  TRQPVEGR 701



 Score =  109 bits (272), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 94/151 (62%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKM-ERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++ +TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 29  EFNLNLAVKHNTITNGLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNT 88

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNL+LM+ I+  +    +++ +  
Sbjct: 89  PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSCISVGSLSAPVIEFLEE 148

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E  ++      ++P    VFVNG+  G+
Sbjct: 149 WGLE--SLEENAHSATPCTK-VFVNGVWMGV 176



 Score = 86.7 bits (213), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/100 (44%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LGVCA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 318 THCEIHPSMILGVCASI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYLTN 363

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 364 FLVRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNAI 403


>gi|52699794|gb|AAU86959.1| DNA-dependent RNA polymerase II second largest subunit [Coenogonium
            leprieurii]
          Length = 716

 Score =  216 bits (550), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 105/263 (39%), Positives = 162/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 366  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDERMDTMANILYYPQKPLATTRSMEYLKF 425

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR+     K    +  ++ 
Sbjct: 426  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYVEQEKHLGMEVVEQF 485

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPT-ISVSAISMATPEY-- 1090
              PL     R     +  LD DGI+APG ++    +++ K+ P   +   +   T  +  
Sbjct: 486  EKPLRSETLRLKHGTYEKLDDDGIIAPGVRVSGEDIIIGKTAPMRTNDEELGQRTKLHTK 545

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++   + + +    ++KVL+++N+E    +K+  R T+ P+IGDKF+SRHGQKG IG+  
Sbjct: 546  RDASTALRSTENGIIDKVLITTNAEGLKFVKVRTRTTKVPQIGDKFASRHGQKGTIGITY 605

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF+  GI PD+I+NPH +
Sbjct: 606  RQEDMPFSAQGIVPDLIINPHAI 628



 Score =  156 bits (395), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 88/239 (36%), Positives = 129/239 (53%), Gaps = 11/239 (4%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESGICPDIIMNPHGLK 1174
            ++ Q  +P   +    +HG        G+I  G+ V  ED+     G    +  N   L 
Sbjct: 481  VVEQFEKPLRSETLRLKHGTYEKLDDDGIIAPGVRVSGEDIII---GKTAPMRTNDEELG 537

Query: 1175 GCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQ 1234
               ++   ++   + + +    ++KVL+++N+E    +K+  R T+ P+IGDKF+SRHGQ
Sbjct: 538  QRTKLHTKRDASTALRSTENGIIDKVLITTNAEGLKFVKVRTRTTKVPQIGDKFASRHGQ 597

Query: 1235 KGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTA 1294
            KG IG+   QEDMPF+  GI PD+I+NPH  PSRMT+  LIE    K   + G   + T 
Sbjct: 598  KGTIGITYRQEDMPFSAQGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATP 657

Query: 1295 FGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHA 1353
            F    +  V   L  HGY  +G +I Y+G TG  L A I+ GP YYQ+L+HMV  KI A
Sbjct: 658  FTEVTVDSVSRLLREHGYQSRGFEIMYNGHTGRKLVAQIFFGPTYYQRLRHMVDXKIXA 716



 Score =  112 bits (280), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 91/151 (60%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW   ++    + GV QVL+R ++ S L  + R N+
Sbjct: 43  EFNLTLGVKSTTITNGLKYSLATGNWGEQKKAASSKAGVAQVLNRYTFASTLSHLRRTNT 102

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT  +  + +++ M  
Sbjct: 103 PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGSPSEPIIEFMVQ 162

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
             ++ +  +  E   SP    VFVNG+  G+
Sbjct: 163 RQMDVLEEY--EPTRSPHATKVFVNGVWVGV 191



 Score = 89.7 bits (221), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 44/100 (44%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LGVCA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 350 THCEIHPSMILGVCASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 395

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 396 FDERMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAI 435


>gi|156627835|gb|ABU88905.1| RNA polymerase II second largest subunit [Psilopezia deligata]
          Length = 801

 Score =  216 bits (550), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 114/290 (39%), Positives = 169/290 (58%), Gaps = 11/290 (3%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DT+   L Y Q+P+  ++++    F
Sbjct: 508  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFQERMDTMANILYYPQKPLATTRSMEFLKF 567

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPN---QTH 1030
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R L YR   C L Q      Q  
Sbjct: 568  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSLFYR---CYLDQEKRVGMQIV 624

Query: 1031 DRILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPE- 1089
            +    P      R     +  LD+DG+VAPG ++    +++ K+ P IS     M   + 
Sbjct: 625  EEFEKPQRSTTLRLKXGTYDKLDEDGLVAPGVRVSGEDIIIGKTSP-ISPDTDEMGQRQK 683

Query: 1090 ---YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVI 1146
                ++V    + +    +++V+ ++NSE    +K+ +R T+ P+IGDKF+SRHGQKG I
Sbjct: 684  YHTKRDVSTPLRSTENGIVDQVVFTTNSEGMKFVKVRMRTTKIPQIGDKFASRHGQKGTI 743

Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSY 1196
            G+    EDMPF   GI PD+I+NPH +     I    E  +S   S+  Y
Sbjct: 744  GITYRMEDMPFTCEGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGY 793



 Score =  106 bits (264), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 91/151 (60%), Gaps = 17/151 (11%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++ +TIT+ L  ++ TGNW + ++    + GV+QVL+R ++ S L  + R N+
Sbjct: 208 EFNLNLAVKSNTITSGLKYSLATGNWASQKKAASSKAGVSQVLNRYTFASTLSHLRRTNT 267

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM++IT     +NM      
Sbjct: 268 PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMSYIT-----RNM------ 316

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
              E +  +  E   SP    +FVNG+  GI
Sbjct: 317 ---EPLEEY--EPQRSPNATKIFVNGVWVGI 342



 Score =  104 bits (260), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 48/113 (42%), Positives = 70/113 (61%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    + +    +++V+ ++NSE    +K+ +R T+ P+IGDKF+SRHGQKG IG+  
Sbjct: 688  RDVSTPLRSTENGIVDQVVFTTNSEGMKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITY 747

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAF 1295
              EDMPF   GI PD+I+NPH  PSRMT+  LIE    K   + G   + T F
Sbjct: 748  RMEDMPFTCEGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGYEGDATPF 800



 Score = 92.0 bits (227), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/100 (44%), Positives = 59/100 (59%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 492 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 537

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
            Q R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 538 FQERMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 577



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 56/114 (49%), Gaps = 14/114 (12%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           ARD L    + HI         KA +L  M+ R++    +   +DDRD++G KRL+LAG 
Sbjct: 119 ARDILQKELLPHISQQEGNETRKAFFLGYMVHRLLQCALERREVDDRDHFGKKRLDLAGP 178

Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYGN 555
           LL+ +F  ++K+   E+           KE NL+  V    + SG  + L  GN
Sbjct: 179 LLAQLFRTLWKQLTKEVYKYLEKCVEGGKEFNLNLAVKSNTITSGLKYSLATGN 232


>gi|70982424|ref|XP_746740.1| DNA-dependent RNA polymerase II RPB140 [Aspergillus fumigatus Af293]
 gi|66844364|gb|EAL84702.1| DNA-dependent RNA polymerase II RPB140 [Aspergillus fumigatus Af293]
 gi|159123019|gb|EDP48139.1| DNA-dependent RNA polymerase II RPB140 [Aspergillus fumigatus A1163]
          Length = 1255

 Score =  216 bits (550), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 109/266 (40%), Positives = 166/266 (62%), Gaps = 9/266 (3%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R++T+   L Y Q+P+  ++++    F
Sbjct: 784  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSMEFLRF 843

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR      K       +R 
Sbjct: 844  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMVGLTVVERF 903

Query: 1034 LGPLLEADT---RKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAISMATPE 1089
              P + +DT   RK  Y    LD+DGI+APG ++    +++ K+ P       +   T  
Sbjct: 904  EKP-MRSDTIGMRKGTYDK--LDEDGIIAPGVRVSGEDIIIGKTAPLAPEAEELGQRTKA 960

Query: 1090 YKEVPVS--YKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
            + ++ VS   + +    +++VLVS++++D   +K+ +R T+ P+IGDKF+SRHGQKG IG
Sbjct: 961  HTKLDVSTPLRSTENGIVDQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIG 1020

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            +   QEDMPF   G+ PD+I+NPH +
Sbjct: 1021 ITYRQEDMPFTREGVSPDLIINPHAI 1046



 Score =  181 bits (460), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 83/176 (47%), Positives = 116/176 (65%)

Query: 1197 LEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICP 1256
            +++VLVS++++D   +K+ +R T+ P+IGDKF+SRHGQKG IG+   QEDMPF   G+ P
Sbjct: 978  VDQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRQEDMPFTREGVSP 1037

Query: 1257 DIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQG 1316
            D+I+NPH  PSRMT+  LIE    K   + G   + T F    +  +   L  HGY  +G
Sbjct: 1038 DLIINPHAIPSRMTIAHLIECQLSKVSALRGFEGDATPFTDVTVDSISRLLREHGYQSRG 1097

Query: 1317 KDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
             ++ Y+G TG  L A ++ GP YYQ+L+HMV DKIHAR+RGP  +LTRQP   R +
Sbjct: 1098 FEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRAR 1153



 Score =  112 bits (281), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 56/144 (38%), Positives = 85/144 (59%), Gaps = 3/144 (2%)

Query: 192 MRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRK 250
           ++  T+T  L  A+ TGNW   ++    + GV+QVLSR +Y S L  + R N+   +  K
Sbjct: 469 IKASTLTGGLKYALATGNWGEQKKAASSKAGVSQVLSRYTYASTLSHLRRTNTPIGRDGK 528

Query: 251 VSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIA 310
           ++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT     + ++  M    +E + 
Sbjct: 529 IAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLE 588

Query: 311 MFNGEELSSPGVYLVFVNGILAGI 334
            F  E   +P    VFVNG+  G+
Sbjct: 589 EF--EPQVTPNATKVFVNGVWVGV 610



 Score = 88.6 bits (218), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LGVCA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 768 THCEIHPSMILGVCASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 813

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R++T+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 814 FDQRMETMANILYYPQKPLATTRSMEFLRFRELPAGQNAI 853



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 56/115 (48%), Gaps = 16/115 (13%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMV-LALSDPDMLDDRDYYGNKRLELAG 514
           AR+ +    + HI         KA +L  M+ R++  AL   D +DDRD++G KRL+LAG
Sbjct: 373 AREIMQKELLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRD-VDDRDHFGKKRLDLAG 431

Query: 515 SLLSLMFEDVFKRFNSELK-------ETNLSGVVN-------LVSGWWFELKYGN 555
            LL+ +F  +F R   +L+       ETN    +N       L  G  + L  GN
Sbjct: 432 PLLANLFRVLFTRVTRDLQRYVQRCVETNREIYLNIGIKASTLTGGLKYALATGN 486


>gi|357216643|gb|AET71055.1| RNA polymerase II second largest subunit, partial [Trametes maxima]
          Length = 676

 Score =  216 bits (550), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 351  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLRF 410

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 411  RELPAGQNAVVAILCYSGYNQEDSVIMNQSSIDRGLFRSMYYRSYMDLEKKSGIQQLEEF 470

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 471  EKPTRDTTLRMKHGTYDKLEDDGLIAPGTNVNGEDIIIGKTAPIPPDSEELGQRTRTHTK 530

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++N+E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 531  RDVSTPLKSTEQGIIDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 590

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 591  RQEDMPFTAEGITPDIIINPHAI 613



 Score =  134 bits (337), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 63/144 (43%), Positives = 90/144 (62%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++N+E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 531  RDVSTPLKSTEQGIIDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 590

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 591  RQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVES 650

Query: 1303 VQEELIRHGYNYQGKDIFYSGITG 1326
            V + L + GY  +G ++ Y G TG
Sbjct: 651  VSQFLRQKGYQSRGLEVMYHGHTG 674



 Score =  110 bits (276), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 94/151 (62%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++ +TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 40  EFNLSLAVKHNTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT 99

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNL+LM+ I+  +    +++ +  
Sbjct: 100 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSCISVGSLSAPVIEFLEE 159

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E  ++      S+P    VFVNG+  G+
Sbjct: 160 WGLE--SLEENAHSSTPCTK-VFVNGVWMGV 187



 Score = 87.0 bits (214), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 74/162 (45%), Gaps = 43/162 (26%)

Query: 691 RFDDFLYEGKIEYLDVNE---------------------GNDSHIAVSE--------SGI 721
           ++D+ + +G IE LD  E                     G D H    E        +  
Sbjct: 270 KWDNLIKDGVIELLDAEEEETVMICMTPEDLENSRLQAAGTDPHANDGEVDPSARLKAPT 329

Query: 722 RPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMG 781
                TH EI P  +LGVCA I              +P+P HNQ+PRNTYQ AMGKQAMG
Sbjct: 330 NAHTWTHCEIHPSMILGVCASI--------------IPFPDHNQSPRNTYQSAMGKQAMG 375

Query: 782 CIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
               N   R+DT+   L Y Q+P+  ++++    F +LPAG+
Sbjct: 376 IYLTNFLVRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQ 417


>gi|68131848|gb|AAY85202.1| RNA polymerase II second largest subunit [Dianthus caryophyllus]
          Length = 674

 Score =  216 bits (550), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 111/270 (41%), Positives = 167/270 (61%), Gaps = 19/270 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 336  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 395

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L +R+ +           ++ 
Sbjct: 396  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR---------DEEKK 446

Query: 1034 LGPLLEADTRKPV------YRHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            +G L++ D  +P        RH +   LD DG+  PG ++    V++ K+ P     A  
Sbjct: 447  MGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPLSPEEAQG 506

Query: 1085 MATP-EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1143
             A     K+  +S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQK
Sbjct: 507  PAARYSRKDHSISLRHSESGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQK 566

Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G +G+   QEDMP+   GI PDII+NPH +
Sbjct: 567  GTVGMTYTQEDMPWTVEGITPDIIVNPHAI 596



 Score =  146 bits (369), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 81/223 (36%), Positives = 123/223 (55%), Gaps = 13/223 (5%)

Query: 1129 RPEIGDKFSSRHGQKGVI--------GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRIT 1180
            RP+  +    RHG    +        G  V  ED+   ++   P   ++P   +G     
Sbjct: 457  RPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKT--TP---LSPEEAQGPAARY 511

Query: 1181 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1240
              K+  +S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+
Sbjct: 512  SRKDHSISLRHSESGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGM 571

Query: 1241 IVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKL 1300
               QEDMP+   GI PDII+NPH  PSRMT+G+LIE + GK     G   + T F    +
Sbjct: 572  TYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHVGKEGDATPFTDVTV 631

Query: 1301 VDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKL 1343
             ++ + L + GY  +G +  Y+G TG  L A I+ GP YYQ+L
Sbjct: 632  DNISKALQKCGYQMRGFETMYNGHTGRKLSAMIFLGPTYYQRL 674



 Score =  117 bits (293), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 63/156 (40%), Positives = 91/156 (58%), Gaps = 8/156 (5%)

Query: 182 KAAQFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRI 241
           +    ++   ++  TIT+ L  ++ TGNW        R GV+QVL+RL+Y S L  + R+
Sbjct: 48  QGKDLNLTFAIKAKTITSGLKYSLATGNWGAANAAGTRAGVSQVLNRLTYASTLSHLRRL 107

Query: 242 NSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIM 301
           NS   +  K++ PR L  SQWGM+CP++TPEG+ACGLVKNLALM +IT  +    +L+ +
Sbjct: 108 NSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFL 167

Query: 302 YNIGIEHIAMFNGEELSS---PGVYLVFVNGILAGI 334
                E  +  N EE+S    P    +FVNG   GI
Sbjct: 168 -----EEWSTENFEEISPAVIPQATKIFVNGGWVGI 198



 Score =  102 bits (255), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 57/141 (40%), Positives = 79/141 (56%), Gaps = 24/141 (17%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVS-----ESGIRP-----GVTTHLEIAPFTLLGVCA 741
           + D + +G IEY+D  E   + I+++      + + P     G  TH EI P  +LGVCA
Sbjct: 275 WHDLVAKGFIEYIDTEEEETTMISMTINDLVSARLNPEESYSGTYTHCEIHPSLILGVCA 334

Query: 742 GIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYA 801
            I              +P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y 
Sbjct: 335 SI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYP 380

Query: 802 QRPMVESKTIRITNFHKLPAG 822
           Q+P+V ++ +   +F +LPAG
Sbjct: 381 QKPLVTTRAMEHLHFRQLPAG 401



 Score = 45.8 bits (107), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 14/70 (20%)

Query: 500 DDRDYYGNKRLELAGSLLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVS 545
           DDRD+YGNKRL+LAG LL  +F  +F++   ++           K+ NL+  +    + S
Sbjct: 6   DDRDHYGNKRLDLAGPLLGGLFRQLFRKLTRDVRAYVQKNVDQGKDLNLTFAIKAKTITS 65

Query: 546 GWWFELKYGN 555
           G  + L  GN
Sbjct: 66  GLKYSLATGN 75


>gi|68300799|gb|AAY89342.1| RNA polymerase II second largest subunit [Nicotiana sylvestris]
          Length = 1203

 Score =  216 bits (550), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 113/270 (41%), Positives = 166/270 (61%), Gaps = 19/270 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 731  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 790

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L +R+ +           ++ 
Sbjct: 791  RQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR---------DEEKK 841

Query: 1034 LGPLLEADTRKPV------YRHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            +G L++ D  +P        RH +   LD DG   PG ++    V++ K+ P     A  
Sbjct: 842  MGTLVKEDFGRPDRENTMGMRHGSYDKLDDDGFAPPGTRVSGDDVIIGKTTPISQDDAQG 901

Query: 1085 M-ATPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1143
              A    K+   S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQK
Sbjct: 902  QPARYTQKDHSTSLRHSETGIVDQVLLTTNADGLRFVKIRMRSVRIPQIGDKFSSRHGQK 961

Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G IG+   QEDMP+N  GI PDII+NPH +
Sbjct: 962  GTIGMTYTQEDMPWNIEGITPDIIVNPHAI 991



 Score =  184 bits (468), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 89/188 (47%), Positives = 122/188 (64%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            K+   S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG IG+  
Sbjct: 909  KDHSTSLRHSETGIVDQVLLTTNADGLRFVKIRMRSVRIPQIGDKFSSRHGQKGTIGMTY 968

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMP+N  GI PDII+NPH  PSRMT+G+L+E + GK     G   + T F    + +
Sbjct: 969  TQEDMPWNIEGITPDIIVNPHAIPSRMTIGQLVECIMGKVAAHMGKEGDATPFTDVTVDN 1028

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
            + + L R GY  +G +  Y+G TG  L A I+ GP YYQ+LKHMV DKIH+R RGP  +L
Sbjct: 1029 ISKALHRCGYQMRGFERMYNGHTGRVLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQIL 1088

Query: 1363 TRQPTGRR 1370
            TRQP   R
Sbjct: 1089 TRQPAEGR 1096



 Score =  114 bits (286), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 61/146 (41%), Positives = 87/146 (59%), Gaps = 8/146 (5%)

Query: 192 MRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKV 251
           ++  TIT+ L  ++ TGNW        R GV+QVL+RL++ S L  + R+NS   +  K+
Sbjct: 453 IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTFASTLSHLRRLNSPIGREGKL 512

Query: 252 SGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAM 311
           + PR L  S WGM+CP++TPEG+ACGLVKNLALM +IT  +    +L+ +     E  + 
Sbjct: 513 AKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFL-----EEWST 567

Query: 312 FNGEELSS---PGVYLVFVNGILAGI 334
            N EE+S    P    +FVNG   GI
Sbjct: 568 ENFEEISPAVIPQSTKIFVNGCWVGI 593



 Score =  102 bits (253), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/141 (41%), Positives = 78/141 (55%), Gaps = 24/141 (17%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIA-----VSESGIRPG-----VTTHLEIAPFTLLGVCA 741
           + D + +G IEY+D  E   + IA     ++ S + P        TH EI P  +LGVCA
Sbjct: 670 WHDLVAKGFIEYVDTEEEETTMIAMTINDLTNSRLNPEEAYSETYTHCEIHPSLILGVCA 729

Query: 742 GIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYA 801
            I              +P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y 
Sbjct: 730 SI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYP 775

Query: 802 QRPMVESKTIRITNFHKLPAG 822
           Q+P+V ++ +   +F +LPAG
Sbjct: 776 QKPLVTTRAMEHLHFRQLPAG 796



 Score = 52.8 bits (125), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 14/114 (12%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A++ L    + H+         KA Y   +I R++L +      DDRD+YGBKRL+LAG 
Sbjct: 357 AKEILQREMLPHVGTREYCETKKAYYFGYIIHRLLLCVLGRRPEDDRDHYGBKRLDLAGP 416

Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYGN 555
           LL  +F  +F++   ++           K+ NL   +    + SG  + L  GN
Sbjct: 417 LLGGLFRMLFRKLTRDVRSYVQKCVDSGKDVNLQFAIKAKTITSGLKYSLATGN 470



 Score = 48.9 bits (115), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 9/80 (11%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDI---------EYTRGSQRVVRSDLV 391
           + +P + ES   T    P   RLR+LTYS+P+ VD+         +Y   ++    + + 
Sbjct: 109 LSRPMMTESDGETNTLFPKAARLRNLTYSSPLYVDVKKEVIKKGHDYEEVTENQEFTKVF 168

Query: 392 IGRMPIMLQSSKCVLRNKTE 411
           IG++PIML+SS C L N +E
Sbjct: 169 IGKVPIMLRSSYCSLYNLSE 188



 Score = 43.5 bits (101), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 28/41 (68%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANI 154
           D W ++ ++ +EKGLV+  +DSFD FI   +++++   ANI
Sbjct: 39  DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDETANI 79


>gi|94410928|gb|ABF18583.1| RNA polymerase II second largest subunit, partial [Hygrocybe
            coccinea]
          Length = 655

 Score =  216 bits (550), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 107/263 (40%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 356  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKF 415

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 416  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEF 475

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 476  EKPTRDNTLRMKHGTYDKLEDDGLIAPGTGVAGEDIIIGKTAPIPPDSEELGQRTRTHTR 535

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 536  RDVSTPLKSTENGIVDQVLITTNSEGQKFVKIRVRATRVPQIGDKFASRHGQKGTIGITY 595

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 596  RQEDMPFTAEGIVPDIIINPHAI 618



 Score =  121 bits (303), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 56/118 (47%), Positives = 76/118 (64%)

Query: 1178 RITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV 1237
            R    ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG 
Sbjct: 531  RTHTRRDVSTPLKSTENGIVDQVLITTNSEGQKFVKIRVRATRVPQIGDKFASRHGQKGT 590

Query: 1238 IGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAF 1295
            IG+   QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F
Sbjct: 591  IGITYRQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPF 648



 Score =  111 bits (277), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 90/151 (59%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 43  EFNLALAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT 102

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM  I+  +    +++ +  
Sbjct: 103 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEE 162

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E +        SS     VFVNG+  G+
Sbjct: 163 WGLESL---EENAHSSTPCTKVFVNGVWMGV 190



 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/177 (33%), Positives = 88/177 (49%), Gaps = 22/177 (12%)

Query: 706 VNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQ 765
            N+G        ++GI     TH EI P  +LG+CA I              +P+P HNQ
Sbjct: 319 ANDGEFDPAVRLKAGINTHTWTHCEIHPSMILGICASI--------------IPFPDHNQ 364

Query: 766 APRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQ 825
           +PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  
Sbjct: 365 SPRNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNA 424

Query: 826 ISPGGAEELTARESCHEVLKIISFSISVAVFDSVWLG-----DVKQGVHQLSEEKEP 877
           I    A    +  +  + + +   SI   +F S++       + K GV QL E ++P
Sbjct: 425 IV---AILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKP 478


>gi|70794968|gb|AAZ08458.1| RNA polymerase II second largest subunit [Rhododendron macrophyllum]
          Length = 1207

 Score =  216 bits (550), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 113/271 (41%), Positives = 166/271 (61%), Gaps = 21/271 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 735  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHF 794

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R + YR+ +           ++ 
Sbjct: 795  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSIFYRSYR---------DEEKK 845

Query: 1034 LGPLLEADTRKPV------YRHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            +G L++ D   P        RH +   LD DG   PG ++    V++ K+ P I+     
Sbjct: 846  MGTLVKEDFGCPNRENTMGMRHGSYDKLDDDGFAPPGTRVAGEDVIIGKTTP-IAPDDAQ 904

Query: 1085 MATPEY--KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQ 1142
              T  Y  ++     + S    +++VL+++N++    +KM +R  R P+IGDKFSSRHGQ
Sbjct: 905  GQTARYTRRDHSTCLRHSESGMVDQVLLTTNADGLRFVKMRMRSIRIPQIGDKFSSRHGQ 964

Query: 1143 KGVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            KG IG+   QEDMP+   GICPDII+NPH +
Sbjct: 965  KGTIGMAYTQEDMPWTIEGICPDIIVNPHAI 995



 Score =  182 bits (462), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 86/174 (49%), Positives = 116/174 (66%)

Query: 1197 LEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICP 1256
            +++VL+++N++    +KM +R  R P+IGDKFSSRHGQKG IG+   QEDMP+   GICP
Sbjct: 927  VDQVLLTTNADGLRFVKMRMRSIRIPQIGDKFSSRHGQKGTIGMAYTQEDMPWTIEGICP 986

Query: 1257 DIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQG 1316
            DII+NPH  PSRMT+G+LIE + GK     G   + T F    + ++ + L + GY  +G
Sbjct: 987  DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG 1046

Query: 1317 KDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRR 1370
             +  Y+G TG  L   I+ GP YYQ+LKHMV DKIH+R RGP  +LTRQP   R
Sbjct: 1047 FERMYNGHTGRPLTYTIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGR 1100



 Score =  116 bits (290), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 62/146 (42%), Positives = 88/146 (60%), Gaps = 8/146 (5%)

Query: 192 MRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKV 251
           ++  TIT+ L  ++ TGNW        R GV+QVL+RL+Y S L  + R+NS   +  K+
Sbjct: 457 IKAKTITSGLKYSLATGNWGQANSAGSRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKL 516

Query: 252 SGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAM 311
           + PR L  S WGM+CP++TPEG+ACGLVKNLALM +IT  +    +L+ +     E  + 
Sbjct: 517 AKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFL-----EEWST 571

Query: 312 FNGEELSSPGVYL---VFVNGILAGI 334
            N EE+S   + L   +FVNG   GI
Sbjct: 572 ENFEEISPAVIPLATKIFVNGCWVGI 597



 Score =  102 bits (253), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/186 (35%), Positives = 89/186 (47%), Gaps = 46/186 (24%)

Query: 663 YCDCPDGYSSGCQPRPTFLNMHQFLGFKRFD----------------DFLYEGKIEYLDV 706
           Y DC      G   RP F+   Q L  K+ D                D + +G IEY+D 
Sbjct: 635 YTDC------GRCSRPLFIVEKQKLQIKKKDILALQQRESPEEVGWHDLVAKGYIEYVDT 688

Query: 707 NEGNDSHIAVSESGIRPG----------VTTHLEIAPFTLLGVCAGIELLQYNKRFHSPG 756
            E   + I+++ + +               TH EI P  +LGVCA I             
Sbjct: 689 EEEETTMISMTINDLTSARLCPDDAYSETYTHCEIHPSLILGVCASI------------- 735

Query: 757 LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 816
            +P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 736 -IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHF 794

Query: 817 HKLPAG 822
            +LPAG
Sbjct: 795 RQLPAG 800



 Score = 50.4 bits (119), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 14/114 (12%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A++ L    + H+         KA Y   +I R++L        DDRD+Y NKRL+LAG 
Sbjct: 361 AKEILQREMLPHVGTGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYANKRLDLAGP 420

Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYGN 555
           LL  +F  +F++   ++           K+ NL   +    + SG  + L  GN
Sbjct: 421 LLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGN 474



 Score = 47.4 bits (111), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 19/85 (22%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVR------------- 387
           + KP + ES   T    P   RLR+LTYS+P+ VD+     ++RVV+             
Sbjct: 112 LSKPMMTESDGETASLFPKAARLRNLTYSSPLYVDV-----TKRVVKKGHDCEEVTETQE 166

Query: 388 -SDLVIGRMPIMLQSSKCVLRNKTE 411
            + + IG++PIML+SS C L   +E
Sbjct: 167 FTKVFIGKVPIMLRSSYCSLYQTSE 191


>gi|52699806|gb|AAU86965.1| DNA-dependent RNA polymerase II second largest subunit [Coenogonium
            luteum]
          Length = 714

 Score =  216 bits (550), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 162/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 364  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDERMDTMANILYYPQKPLATTRSMEYLKF 423

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR+     K    +  ++ 
Sbjct: 424  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYVEQEKHLGMEVVEQF 483

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS-AISMATPEY-- 1090
              PL     R     +  LD DGI+APG ++    +++ K+ P  S    +   T  +  
Sbjct: 484  EKPLRSETLRLKHGTYDKLDDDGIIAPGIRVSGEDIIIGKTAPMRSNDEELGQRTKLHTK 543

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++   + + +    ++KVL+++N+E    +K+  R T+ P+IGDKF+SRHGQKG IG+  
Sbjct: 544  RDASTALRSTESGLVDKVLITTNAEGLKFVKVRTRTTKVPQIGDKFASRHGQKGTIGITY 603

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF+  GI PD+I+NPH +
Sbjct: 604  RQEDMPFSAQGIVPDLIINPHAI 626



 Score =  159 bits (403), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 88/239 (36%), Positives = 131/239 (54%), Gaps = 11/239 (4%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESGICPDIIMNPHGLK 1174
            ++ Q  +P   +    +HG        G+I  G+ V  ED+     G    +  N   L 
Sbjct: 479  VVEQFEKPLRSETLRLKHGTYDKLDDDGIIAPGIRVSGEDIII---GKTAPMRSNDEELG 535

Query: 1175 GCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQ 1234
               ++   ++   + + +    ++KVL+++N+E    +K+  R T+ P+IGDKF+SRHGQ
Sbjct: 536  QRTKLHTKRDASTALRSTESGLVDKVLITTNAEGLKFVKVRTRTTKVPQIGDKFASRHGQ 595

Query: 1235 KGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTA 1294
            KG IG+   QEDMPF+  GI PD+I+NPH  PSRMT+  LIE    K   + G   + T 
Sbjct: 596  KGTIGITYRQEDMPFSAQGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATP 655

Query: 1295 FGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHA 1353
            F    +  V   L  HGY  +G +I Y+G TG+ L A ++ GP YYQ+L+HMV DKI A
Sbjct: 656  FTEVTVDSVSRLLREHGYQSRGFEIMYNGHTGKKLVAQVFFGPTYYQRLRHMVDDKIXA 714



 Score =  112 bits (280), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 91/151 (60%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW   ++    + GV QVL+R ++ S L  + R N+
Sbjct: 41  EFNLTLGVKSTTITNGLKYSLATGNWGEQKKAASSKAGVAQVLNRYTFASTLSHLRRTNT 100

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT  +  + +++ M  
Sbjct: 101 PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGSPSEPIIEFMVQ 160

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
             ++ +  +  E   SP    VFVNG+  G+
Sbjct: 161 RQMDVLEEY--EPTRSPHATKVFVNGVWVGV 189



 Score = 90.9 bits (224), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 55/164 (33%), Positives = 76/164 (46%), Gaps = 43/164 (26%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVS----------ESGIRP------------------ 723
           ++  L  G +E+LD  E     IA+S          ++G  P                  
Sbjct: 284 WNGLLVNGAVEFLDAEEEETVMIAMSPEDLEISRMVQAGYAPPEPSADPNARVKAPVKAI 343

Query: 724 -GVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGC 782
               TH EI P  +LGVCA I              +P+P HNQ+PRNTYQ AMGKQAMG 
Sbjct: 344 QQTWTHCEIHPSMILGVCASI--------------IPFPDHNQSPRNTYQSAMGKQAMGV 389

Query: 783 IGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              N   R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 390 FLTNFDERMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAI 433


>gi|357216629|gb|AET71048.1| RNA polymerase II second largest subunit, partial [Trametes
            membranacea]
          Length = 658

 Score =  216 bits (550), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 346  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLRF 405

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 406  RELPAGQNAVVAILCYSGYNQEDSVIMNQSSIDRGLFRSMYYRSYMDLEKKSGIQQLEEF 465

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 466  EKPTRDTTLRMKHGTYDKLEDDGLIAPGTNVNGEDIIIGKTAPIPPDSEELGQRTRTHTK 525

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++N+E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 526  RDVSTPLKSTESGIIDQVLITTNNEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 585

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 586  RQEDMPFTAEGITPDIIINPHAI 608



 Score =  123 bits (309), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 58/130 (44%), Positives = 81/130 (62%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++N+E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 526  RDVSTPLKSTESGIIDQVLITTNNEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 585

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 586  RQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTELTVES 645

Query: 1303 VQEELIRHGY 1312
            V + L   GY
Sbjct: 646  VSQFLRNKGY 655



 Score =  110 bits (275), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 94/151 (62%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++ +TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 40  EFNLSLAVKHNTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT 99

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNL+LM+ I+  +    +++ +  
Sbjct: 100 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSCISVGSLSAPVIEFLEE 159

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E  ++      S+P    VFVNG+  G+
Sbjct: 160 WGLE--SLEENAHSSTPCTK-VFVNGVWMGV 187



 Score = 87.0 bits (214), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 75/162 (46%), Gaps = 43/162 (26%)

Query: 691 RFDDFLYEGKIEYLDVNE--------------------------GNDSHIAVS---ESGI 721
           ++D+ + +G IE LD  E                           ND  +  S   ++  
Sbjct: 265 KWDNLIKDGVIELLDAEEEETVMICMTPEDLENSRLQAAGLDTQANDGEVDPSARLKAAT 324

Query: 722 RPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMG 781
                TH EI P  +LGVCA I              +P+P HNQ+PRNTYQ AMGKQAMG
Sbjct: 325 NAHTWTHCEIHPSMILGVCASI--------------IPFPDHNQSPRNTYQSAMGKQAMG 370

Query: 782 CIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
               N   R+DT+   L Y Q+P+  ++++    F +LPAG+
Sbjct: 371 IYLTNFLVRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQ 412


>gi|300394738|gb|ADK11907.1| DNA-directed RNA polymerase II subunit two, partial [Athelia sp.
            L-10567]
          Length = 654

 Score =  216 bits (550), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 339  IIPFPDHNQSPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKF 398

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 399  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSVDRGLFRSIYYRSYMDLEKKSGIQQLEEF 458

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  E   R     +  ++ DG++APG  +    +++ K+ P    S        T   
Sbjct: 459  EKPTRENTLRMKHGTYDKIEDDGLIAPGTGVSGEDIIIGKTAPIPPDSEELGQRTRTHTR 518

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG +G+  
Sbjct: 519  RDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRATRIPQIGDKFASRHGQKGTVGITY 578

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 579  RQEDMPFTAEGIVPDIIINPHAI 601



 Score =  125 bits (315), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 60/134 (44%), Positives = 83/134 (61%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG +G+  
Sbjct: 519  RDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRATRIPQIGDKFASRHGQKGTVGITY 578

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDII+NPH  PSRMT+G LIE L  K   + GN  + T F    +  
Sbjct: 579  RQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLIECLLSKVATLIGNEGDATPFTDLTVES 638

Query: 1303 VQEELIRHGYNYQG 1316
            V   L + GY  +G
Sbjct: 639  VSSFLRQKGYQSRG 652



 Score =  110 bits (274), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 91/151 (60%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 33  EFNLSLAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT 92

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM+ I+  +    +++ +  
Sbjct: 93  PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSLSAPVIEFLEE 152

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E +        S+     VFVNG+  G+
Sbjct: 153 WGLESL---EENAHSTTPCTKVFVNGVWMGV 180



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/121 (38%), Positives = 65/121 (53%), Gaps = 14/121 (11%)

Query: 706 VNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQ 765
            N+G     A  ++G      TH EI P  +LG+CA I              +P+P HNQ
Sbjct: 302 ANDGEFDPAARLKAGTNTHTWTHCEIHPSMILGICASI--------------IPFPDHNQ 347

Query: 766 APRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQ 825
           +PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  
Sbjct: 348 SPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNA 407

Query: 826 I 826
           I
Sbjct: 408 I 408


>gi|45545347|gb|AAS67521.1| DNA-dependent RNA polymerase II second largest subunit, partial
            [Sphaerophorus globosus]
          Length = 903

 Score =  216 bits (550), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 106/264 (40%), Positives = 166/264 (62%), Gaps = 5/264 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 561  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDQRMDTMANILYYPQKPLATTRSMEFLKF 620

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR+     K+      ++ 
Sbjct: 621  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRVGMSVVEQF 680

Query: 1034 LGPLLEADTRKPVY-RHRALDQDGIVAPGEQICERQVLVNKSMP-TISVSAISMATPEY- 1090
              P + +DT K  +  +  LD DGIVAPG ++    +++ K+ P +     +   T ++ 
Sbjct: 681  EKP-MRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPISPDAEELGQRTKQHT 739

Query: 1091 -KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             ++     + +    +++VL+S+NS+    +K+ +R T+ P+IGDKF+SRHGQKG IG+ 
Sbjct: 740  KRDTSTPLRSTENGIVDQVLLSTNSDGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGIT 799

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
              QEDMPF   G+ PD+I+NPH +
Sbjct: 800  YRQEDMPFTSEGVVPDLIINPHAI 823



 Score =  149 bits (375), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 82/232 (35%), Positives = 125/232 (53%), Gaps = 13/232 (5%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESG-ICPDIIMNPHGL 1173
            ++ Q  +P   D    +HG        G++  G+ V  ED+   ++  I PD       L
Sbjct: 676  VVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPISPD----AEEL 731

Query: 1174 KGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
                +    ++     + +    +++VL+S+NS+    +K+ +R T+ P+IGDKF+SRHG
Sbjct: 732  GQRTKQHTKRDTSTPLRSTENGIVDQVLLSTNSDGLRFVKVRMRTTKIPQIGDKFASRHG 791

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGT 1293
            QKG IG+   QEDMPF   G+ PD+I+NPH  PSRMT+  LIE    K   + G   + T
Sbjct: 792  QKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDAT 851

Query: 1294 AFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKH 1345
             F    +  V   L  HGY  +G +I Y+G TG+ L A ++ GP YYQ+L+H
Sbjct: 852  PFTEVTVDSVSRLLREHGYQSRGFEIMYNGHTGQKLRAQVFLGPTYYQRLRH 903



 Score =  117 bits (292), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 93/151 (61%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  T+TN L  ++ TGNW   ++    + GV+QVL+R ++ S L  + R N+
Sbjct: 237 EFNLTLAVKSTTLTNGLKYSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNT 296

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT     + ++  M  
Sbjct: 297 PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMVQ 356

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G++ +  +  E L+SP    +FVNG+  G+
Sbjct: 357 RGMDLLEEY--EPLNSPNATKIFVNGVWVGV 385



 Score = 90.5 bits (223), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 545 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 590

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 591 YDQRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 630



 Score = 54.7 bits (130), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 14/114 (12%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           ARD +    + HI         KA +L  M+ R++        +DDRD++G KRL+LAG 
Sbjct: 148 ARDIMQKELLPHISQSEGTETRKAFFLGYMVHRLLQCALGRREVDDRDHFGKKRLDLAGP 207

Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYGN 555
           LL+ +F  +F +   ++           KE NL+  V    L +G  + L  GN
Sbjct: 208 LLAGLFRMLFNKLTKDVYKYLQRCVENNKEFNLTLAVKSTTLTNGLKYSLATGN 261


>gi|357216657|gb|AET71062.1| RNA polymerase II second largest subunit, partial [Coriolopsis cf.
            byrsina FP105050sp]
          Length = 659

 Score =  216 bits (550), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 346  IIPFPDHNQSPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLRF 405

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 406  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEF 465

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 466  EKPTRDTTLRMKHGTYDKLEDDGLIAPGTNVNGEDIIIGKTAPIPPDSEELGQRTRTHTR 525

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++N+E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 526  RDVSTPLKSTEQGIVDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 585

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 586  RQEDMPFTAEGITPDIIINPHAI 608



 Score =  125 bits (315), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 60/139 (43%), Positives = 85/139 (61%)

Query: 1178 RITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV 1237
            R    ++V    K +    +++VL+++N+E    +K+ +R TR P+IGDKF+SRHGQKG 
Sbjct: 521  RTHTRRDVSTPLKSTEQGIVDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGT 580

Query: 1238 IGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGG 1297
            IG+   QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F  
Sbjct: 581  IGITYRQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLSKLATLIGNEGDATPFTD 640

Query: 1298 TKLVDVQEELIRHGYNYQG 1316
              +  V + L + GY  +G
Sbjct: 641  LTVESVSQFLRQKGYQSRG 659



 Score =  112 bits (279), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 93/151 (61%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F+I   ++ +TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 40  EFNISLAVKHNTITNGLKYSLATGNWGDQKKTMSAKAGVSQVLNRYTYASTLSHLRRCNT 99

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNL+LM+ I+       +++ +  
Sbjct: 100 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSCISVGTLSAPVIEFLEE 159

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E  ++      S+P    VFVNG+  G+
Sbjct: 160 WGLE--SLEENAHASTPCTK-VFVNGVWMGV 187



 Score = 88.2 bits (217), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 59/177 (33%), Positives = 88/177 (49%), Gaps = 22/177 (12%)

Query: 706 VNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQ 765
            ++ ND   A  ++       TH EI P  +LGVCA I              +P+P HNQ
Sbjct: 309 ADDENDDPSARLKAATSAHSWTHCEIHPSMILGVCASI--------------IPFPDHNQ 354

Query: 766 APRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQ 825
           +PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  
Sbjct: 355 SPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNA 414

Query: 826 ISPGGAEELTARESCHEVLKIISFSISVAVFDSVWLG-----DVKQGVHQLSEEKEP 877
           I    A    +  +  + + +   SI   +F S++       + K GV QL E ++P
Sbjct: 415 IV---AILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKP 468


>gi|189006590|gb|ABF18587.2| RNA polymerase II second largest subunit [Infundibulicybe gibba]
          Length = 689

 Score =  216 bits (550), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 347  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKF 406

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 407  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEF 466

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P+ +   R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 467  EKPMRDNTLRMKHGTYDKLEDDGLIAPGTGVAGEDIIIGKTAPIPPDSEELGQRTRTHTR 526

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ +R TR P+ GDKF+SRHGQKG IG+  
Sbjct: 527  RDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRSTRIPQTGDKFASRHGQKGTIGITY 586

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 587  RQEDMPFTAEGIVPDIIINPHAI 609



 Score =  155 bits (393), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 74/168 (44%), Positives = 103/168 (61%)

Query: 1178 RITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV 1237
            R    ++V    K +    +++VL+++NSE    +K+ +R TR P+ GDKF+SRHGQKG 
Sbjct: 522  RTHTRRDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRSTRIPQTGDKFASRHGQKGT 581

Query: 1238 IGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGG 1297
            IG+   QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F  
Sbjct: 582  IGITYRQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTD 641

Query: 1298 TKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKH 1345
              +  V   L + GY  +G ++ + G TG  L+A +Y GP YYQ+LKH
Sbjct: 642  LTVESVSTFLRQKGYQSRGLEVMFHGHTGRKLQAQVYLGPTYYQRLKH 689



 Score =  111 bits (278), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 92/151 (60%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 41  EFNLALAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT 100

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM  I+  +    +++ +  
Sbjct: 101 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEE 160

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E  ++      S+P    VFVNG+  G+
Sbjct: 161 WGLE--SLEENAHSSTPCTK-VFVNGVWMGV 188



 Score = 90.9 bits (224), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 59/177 (33%), Positives = 89/177 (50%), Gaps = 22/177 (12%)

Query: 706 VNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQ 765
            N+G     A  ++GI     TH EI P  +LG+CA I              +P+P HNQ
Sbjct: 310 ANDGEFDPAARLKAGINAHTWTHCEIHPSMILGICASI--------------IPFPDHNQ 355

Query: 766 APRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQ 825
           +PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  
Sbjct: 356 SPRNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNA 415

Query: 826 ISPGGAEELTARESCHEVLKIISFSISVAVFDSVWLG-----DVKQGVHQLSEEKEP 877
           I    A    +  +  + + +   SI   +F S++       + K G+ QL E ++P
Sbjct: 416 IV---AILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEFEKP 469


>gi|94410904|gb|ABF18573.1| RNA polymerase II second largest subunit, partial [Fistulina
            antarctica]
          Length = 690

 Score =  216 bits (550), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 107/263 (40%), Positives = 163/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 346  IIPFPDHNQSPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKF 405

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K    Q  ++ 
Sbjct: 406  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSMFYRSYMDLEKTSGVQQLEQF 465

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS-AISMATPEY-- 1090
              P  +   R     +  LD DG++APG  +    +++ K+ P    S  +   T  +  
Sbjct: 466  EKPSRDTTIRMKHGTYDKLDDDGLIAPGTGVNGEDIIIGKTAPIPPDSEELGQRTRNHTR 525

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VLV++N++    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 526  RDVSTPLKSTESGIVDQVLVTTNADGHKFVKIRVRSTRVPQIGDKFASRHGQKGTIGITY 585

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 586  RQEDMPFTAEGIVPDIIINPHAI 608



 Score =  162 bits (410), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 76/165 (46%), Positives = 106/165 (64%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VLV++N++    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 526  RDVSTPLKSTESGIVDQVLVTTNADGHKFVKIRVRSTRVPQIGDKFASRHGQKGTIGITY 585

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 586  RQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVES 645

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMV 1347
            V   L + GY+ +G ++ Y G TG  L+A +Y GP YYQ+LKHMV
Sbjct: 646  VSRFLRQKGYHSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMV 690



 Score =  106 bits (265), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 56/150 (37%), Positives = 88/150 (58%), Gaps = 4/150 (2%)

Query: 186 FDIVNHMRQDTITNALTAAIQTGNWTIRRFKM-ERQGVTQVLSRLSYISGLGMMTRINSQ 244
           F +   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+ 
Sbjct: 42  FHLNMAVKSQTITNGLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTP 101

Query: 245 FEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNI 304
             +  K++ PR    + WGM+CP++TPEG+ACGLVKNLALM  I+  +    ++  +   
Sbjct: 102 LGREGKIAKPRQXHNTHWGMVCPAETPEGQACGLVKNLALMACISVGSYSAPVIDFLEEW 161

Query: 305 GIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
           G+E  ++      S+P    VFVNG+  G+
Sbjct: 162 GLE--SLXENAHSSTPCTK-VFVNGVWMGV 188



 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/109 (41%), Positives = 62/109 (56%), Gaps = 14/109 (12%)

Query: 718 ESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGK 777
           ++GI     TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGK
Sbjct: 321 KAGINTHTWTHCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGK 366

Query: 778 QAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
           QAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 367 QAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAI 415


>gi|55583690|gb|AAV53364.1| RNA polymerase II second largest subunit [Grifola sordulenta]
          Length = 712

 Score =  216 bits (550), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 357  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLRF 416

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 417  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSVDRGLFRSMYYRSYMDLEKKSGVQQVEAF 476

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 477  EKPTRDTTLRMKHGTYDKLEDDGLIAPGTNVNGEDIIIGKTAPIAPDSEELGQRTRTHTK 536

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++N+E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 537  RDVSTPLKSTEQGIIDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 596

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 597  RQEDMPFTAEGITPDIIINPHAI 619



 Score =  183 bits (464), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 93/213 (43%), Positives = 128/213 (60%), Gaps = 5/213 (2%)

Query: 1147 GLIVEQEDMPFNESG-ICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSN 1205
            G  V  ED+   ++  I PD       L    R    ++V    K +    +++VL+++N
Sbjct: 504  GTNVNGEDIIIGKTAPIAPD----SEELGQRTRTHTKRDVSTPLKSTEQGIIDQVLITTN 559

Query: 1206 SEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGY 1265
            +E    +K+ +R TR P+IGDKF+SRHGQKG IG+   QEDMPF   GI PDII+NPH  
Sbjct: 560  AEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIIINPHAI 619

Query: 1266 PSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGIT 1325
            PSRMT+G L+E L  K   + GN  + T F    +  V + L + GY  +G ++ Y G T
Sbjct: 620  PSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSQFLRQKGYQSRGLEVMYHGHT 679

Query: 1326 GEALEAYIYSGPVYYQKLKHMVQDKIHARSRGP 1358
            G  L+A +Y GP YYQ+LKHMV DKIH+R+RGP
Sbjct: 680  GRKLQAQVYLGPTYYQRLKHMVDDKIHSRARGP 712



 Score =  110 bits (276), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 74/247 (29%), Positives = 125/247 (50%), Gaps = 35/247 (14%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKM-ERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++ +TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 44  EFNLSLAVKHNTITNGLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNT 103

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNL+LM  I+  +    +++ +  
Sbjct: 104 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMACISVGSLSAPVIEFLEE 163

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGITCHHKEVC-----------KPEIEESFNY 352
            G+E  ++      S+P    VFVNG+  G+   H++             K +I    + 
Sbjct: 164 WGLE--SLEENAHSSTPCTK-VFVNGVWMGV---HRDPANLVKTIKKLRRKDDISAEVSV 217

Query: 353 TRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSS--KCVLRNKT 410
            R     E RL              YT    RV R   ++    ++LQ    + ++R+K 
Sbjct: 218 VRDIRERELRL--------------YTDAG-RVCRPLFIVENQQLLLQKKHIEWLIRSKE 262

Query: 411 EYTSSSR 417
           E T+  +
Sbjct: 263 EQTTKPK 269



 Score = 87.4 bits (215), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 76/165 (46%), Gaps = 43/165 (26%)

Query: 691 RFDDFLYEGKIEYLDVNEGNDSHIAVS----------ESGIRPGVT-------------- 726
           ++D  + +G IE LD  E     I ++           +GI P                 
Sbjct: 276 KWDHLIRDGVIELLDAEEEETVMICMTPEDLENSRLQAAGIDPHANDGDFDPASRLKAPT 335

Query: 727 -----THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMG 781
                TH EI P  +LGVCA I              +P+P HNQ+PRNTYQ AMGKQAMG
Sbjct: 336 NAYTWTHCEIHPSMILGVCASI--------------IPFPDHNQSPRNTYQSAMGKQAMG 381

Query: 782 CIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
               N   R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 382 IYLTNFLVRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNAI 426


>gi|350534526|ref|NP_001233889.1| DNA-directed RNA polymerase II subunit RPB2 [Solanum lycopersicum]
 gi|11134656|sp|Q42877.1|RPB2_SOLLC RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA
            polymerase II subunit 2; Short=RNA polymerase II subunit
            B2; AltName: Full=DNA-directed RNA polymerase II 135 kDa
            polypeptide
 gi|1049068|gb|AAC49273.1| RNA polymerase II subunit 2 [Solanum lycopersicum]
          Length = 1191

 Score =  216 bits (550), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 111/270 (41%), Positives = 167/270 (61%), Gaps = 19/270 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 717  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 776

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L +R+ +           ++ 
Sbjct: 777  RQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR---------DEEKK 827

Query: 1034 LGPLLEADTRKPV------YRHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            +G L++ D  +P        RH +   LD DG+  PG ++    V++ K+ P     A  
Sbjct: 828  MGTLVKEDFGRPDRASTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDAQG 887

Query: 1085 MATP-EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1143
             A+    K+   S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQK
Sbjct: 888  QASRYTRKDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQK 947

Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G +G+   QEDMP+   GI PDII+NPH +
Sbjct: 948  GTVGMTYTQEDMPWTVEGITPDIIVNPHAI 977



 Score =  181 bits (460), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 87/188 (46%), Positives = 121/188 (64%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            K+   S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+  
Sbjct: 895  KDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTY 954

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMP+   GI PDII+NPH  PSRMT+G+LIE + GK     G   + T F    + +
Sbjct: 955  TQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDN 1014

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
            + + L + GY  +G +  Y+G TG  L A I+ GP YYQ+LKHMV DKIH+R RGP  +L
Sbjct: 1015 ISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQIL 1074

Query: 1363 TRQPTGRR 1370
            TRQP   R
Sbjct: 1075 TRQPAEGR 1082



 Score =  120 bits (300), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 64/146 (43%), Positives = 88/146 (60%), Gaps = 8/146 (5%)

Query: 192 MRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKV 251
           ++  TIT+ L  ++ TGNW        R GV+QVL+RL+Y S L  + R+NS   +  K+
Sbjct: 439 IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKL 498

Query: 252 SGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAM 311
           + PR L  SQWGM+CP++TPEG+ACGLVKNLALM +IT  +    +L+ +   G E    
Sbjct: 499 AKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTE---- 554

Query: 312 FNGEELSS---PGVYLVFVNGILAGI 334
            N EE+S    P    +FVNG   GI
Sbjct: 555 -NFEEISPAVIPQATKIFVNGTWVGI 579



 Score =  104 bits (259), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 64/172 (37%), Positives = 88/172 (51%), Gaps = 40/172 (23%)

Query: 677 RPTFLNMHQFLGFKRFD----------------DFLYEGKIEYLDVNEGNDSHIAVS--- 717
           RP F+   Q L  K+ D                D + +G IEY+D  E   + I+++   
Sbjct: 625 RPLFIVEKQRLMIKKKDIQTLQQRESPDEGGWHDLVAKGYIEYIDTEEEETTMISMTIND 684

Query: 718 --ESGIRPG-----VTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNT 770
             ++ + PG       TH EI P  +LGVCA I              +P+P HNQ+PRNT
Sbjct: 685 LVQARLNPGDAYSDTYTHCEIHPSLILGVCASI--------------IPFPDHNQSPRNT 730

Query: 771 YQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAG 822
           YQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F +LPAG
Sbjct: 731 YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG 782



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 14/114 (12%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A++ L    + H+ V       KA Y   +I R++L        DDRD+YGNKRL+LAG 
Sbjct: 343 AKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGP 402

Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYGN 555
           LL  +F  +F++   ++           K+ NL   +    + SG  + L  GN
Sbjct: 403 LLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGN 456



 Score = 49.3 bits (116), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 19/85 (22%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVR------------- 387
           + KP + ES   T    P   RLR+LTYSAP+ VD+     ++RV++             
Sbjct: 94  LSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV-----TKRVIKKGHDGEEVTETQD 148

Query: 388 -SDLVIGRMPIMLQSSKCVLRNKTE 411
            + + IG++PIML+SS C L   +E
Sbjct: 149 FTKVFIGKVPIMLRSSYCTLYQNSE 173


>gi|45120564|gb|AAO64650.2| RNA polymerase II subunit RPB2, partial [Bondarzewia montana]
          Length = 867

 Score =  216 bits (550), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 538  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKF 597

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 598  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEF 657

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  ++ DG++APG  +    +++ K+ P    S        T   
Sbjct: 658  EKPTRDTTLRMKHGTYDKIEDDGLIAPGTGVTGEDIIIGKTAPIPPDSEELGQRTRTHTR 717

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 718  RDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITY 777

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 778  RQEDMPFTAEGITPDIIINPHAI 800



 Score =  137 bits (345), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 66/149 (44%), Positives = 92/149 (61%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 718  RDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITY 777

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 778  RQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTELTVES 837

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEA 1331
            V   L + GY  +G ++ Y G TG  L+A
Sbjct: 838  VSAFLRQQGYQSRGLEVMYHGHTGRKLQA 866



 Score =  111 bits (277), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 92/151 (60%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++ +TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 229 EFNLSLAVKHNTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT 288

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM  I+  +    ++  +  
Sbjct: 289 PLGRXGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMATISVGSPSGPVIDFLEE 348

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E  ++      ++P    +FVNGI  G+
Sbjct: 349 WGLE--SLEENAHSATPTTK-IFVNGIWMGV 376



 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/110 (41%), Positives = 62/110 (56%), Gaps = 14/110 (12%)

Query: 717 SESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMG 776
           + SGI     TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMG
Sbjct: 512 AASGINTHTWTHCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMG 557

Query: 777 KQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
           KQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 558 KQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAI 607



 Score = 58.2 bits (139), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 58/114 (50%), Gaps = 14/114 (12%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A++ L    + HI ++      KA +   MI R++LA  +   LDD D++G KRL+LAG 
Sbjct: 140 AQEILQKEMLPHISMMEGSESKKAYFFGYMIHRLLLAAMERRELDDXDHFGKKRLDLAGP 199

Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYGN 555
           LL+ +F  +F++   ++           KE NLS  V    + +G  + L  GN
Sbjct: 200 LLANLFRMLFRKLTRDVYRYLQKCVETHKEFNLSLAVKHNTITNGLKYSLATGN 253


>gi|40643996|emb|CAD91515.1| RNA polymerase II second largest subunit [Hedera helix]
          Length = 541

 Score =  216 bits (550), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 110/271 (40%), Positives = 166/271 (61%), Gaps = 20/271 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 202  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNFQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 261

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R + +R+ +           ++ 
Sbjct: 262  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSIFFRSYR---------DEEKK 312

Query: 1034 LGPLLEADTRKPV------YRHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            +G L++ D  +P        RH +   LD DG+  PG ++    V++ K+ P     A  
Sbjct: 313  MGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDDAQG 372

Query: 1085 MATPEY--KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQ 1142
             A   Y  ++   S + S    +++VL+++N++    +K+ +R  R P IGDKFSSRHGQ
Sbjct: 373  QAASRYTRRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSXRIPXIGDKFSSRHGQ 432

Query: 1143 KGVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            KG +G+   QEDMP+   GI PDII+NPH +
Sbjct: 433  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAI 463



 Score =  142 bits (357), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 68/157 (43%), Positives = 97/157 (61%)

Query: 1187 VSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQED 1246
             S + S    +++VL+++N++    +K+ +R  R P IGDKFSSRHGQKG +G+   QED
Sbjct: 385  TSLRHSETGMVDQVLLTTNADGLRFVKVRVRSXRIPXIGDKFSSRHGQKGTVGMTYTQED 444

Query: 1247 MPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEE 1306
            MP+   GI PDII+NPH  PSRMT+G+LIE + GK     G   + T F    + ++   
Sbjct: 445  MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRA 504

Query: 1307 LIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKL 1343
            L + GY  +G +  Y+G TG  L A I+ GP YYQ+L
Sbjct: 505  LHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 541



 Score = 99.4 bits (246), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/141 (39%), Positives = 78/141 (55%), Gaps = 24/141 (17%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVS-----ESGIRP-----GVTTHLEIAPFTLLGVCA 741
           + D + +G IEY+D  E   + I+++      + + P        TH EI P  +LGVCA
Sbjct: 141 WHDLVAKGFIEYIDTEEEETTMISMTINDLLSARVNPEEAYSDTYTHCEIHPSLILGVCA 200

Query: 742 GIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYA 801
            I              +P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y 
Sbjct: 201 SI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYVTNFQFRMDTLAYVLYYP 246

Query: 802 QRPMVESKTIRITNFHKLPAG 822
           Q+P+V ++ +   +F +LPAG
Sbjct: 247 QKPLVTTRAMEHLHFRQLPAG 267



 Score = 50.1 bits (118), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 41/70 (58%), Gaps = 10/70 (14%)

Query: 269 DTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMFNGEELSSPGVYL---- 324
           +TPEG+ACGLVKNLALM ++T  +    +L+ +   G E     N EE+ SP V      
Sbjct: 1   ETPEGQACGLVKNLALMVYVTVGSAAYPILEFLEEWGTE-----NFEEI-SPAVITQATK 54

Query: 325 VFVNGILAGI 334
           +FVNG   GI
Sbjct: 55  IFVNGCWVGI 64


>gi|317408993|gb|ADV17878.1| RNA polymerase II second largest subunit [Gloeophyllum striatum]
          Length = 349

 Score =  216 bits (550), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 107/263 (40%), Positives = 164/263 (62%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 18   IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLRF 77

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 78   RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEF 137

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS-AISMATPEY-- 1090
              P  E   R     +  ++ DG++APG  +    +++ K+ P    S  +   T  +  
Sbjct: 138  EKPTRETTLRMKHGTYDKIEDDGLIAPGTGVNGDDIIIGKTAPIPPDSEELGQRTRSHTR 197

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V  + K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 198  RDVSTALKSTESGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITY 257

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 258  RQEDMPFTAEGITPDIIINPHAI 280



 Score =  141 bits (355), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 67/152 (44%), Positives = 95/152 (62%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V  + K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 198  RDVSTALKSTESGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITY 257

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 258  RQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVES 317

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIY 1334
            V   L + GY  +G ++ Y G TG  L+A +Y
Sbjct: 318  VSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVY 349



 Score = 87.4 bits (215), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 56/156 (35%), Positives = 81/156 (51%), Gaps = 22/156 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LGVCA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 2   THCEIHPSMILGVCASI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYLTN 47

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQISPGGAEELTARESCHEVLKI 846
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I    A    +  +  + + +
Sbjct: 48  FLVRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNAIV---AILCYSGYNQEDSVIM 104

Query: 847 ISFSISVAVFDSVWLG-----DVKQGVHQLSEEKEP 877
              SI   +F S++       + K GV QL E ++P
Sbjct: 105 NQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKP 140


>gi|68131878|gb|AAY85217.1| RNA polymerase II second largest subunit [Muehlenbeckia platyclada]
          Length = 875

 Score =  216 bits (550), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 110/271 (40%), Positives = 167/271 (61%), Gaps = 20/271 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 614  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 673

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L +R+ +           ++ 
Sbjct: 674  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR---------DEEKK 724

Query: 1034 LGPLLEADTRKPV------YRHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            +G L++ D  +P        RH +   LD DG+  PG ++    V++ K+ P     A  
Sbjct: 725  MGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTKVSGEDVIIGKTTPLAPDEAQG 784

Query: 1085 MATPEY--KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQ 1142
                 Y  ++  +S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQ
Sbjct: 785  PNAARYTRRDHSISLRHSENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 844

Query: 1143 KGVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            KG +G+   QEDMP+   GI PDII+NPH +
Sbjct: 845  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAI 875



 Score =  117 bits (293), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 64/147 (43%), Positives = 88/147 (59%), Gaps = 9/147 (6%)

Query: 192 MRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKV 251
           ++  TIT+ L  ++ TGNW        R GV+QVL+RL+Y S L  + R+NS   +  K+
Sbjct: 335 IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPTGREGKL 394

Query: 252 SGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAM 311
           + PR L  SQWGM+CP++TPEG+ACGLVKNLALM +IT  +    +L+ +     E  + 
Sbjct: 395 AKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFL-----EEWST 449

Query: 312 FNGEELSSPGVY----LVFVNGILAGI 334
            N EE  SP V      +FVNG   GI
Sbjct: 450 ENFEEEISPAVIPQAAKIFVNGCWVGI 476



 Score =  100 bits (248), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 56/141 (39%), Positives = 78/141 (55%), Gaps = 24/141 (17%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVS-----ESGIRPG-----VTTHLEIAPFTLLGVCA 741
           + D + +G IEY+D  E   + I+++      + + P        TH EI P  +LGVCA
Sbjct: 553 WHDLVAKGFIEYIDTEEEETTMISMTINDLITARVNPEEAYSETYTHCEIHPSLILGVCA 612

Query: 742 GIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYA 801
            I              +P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y 
Sbjct: 613 SI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYP 658

Query: 802 QRPMVESKTIRITNFHKLPAG 822
           Q+P+V ++ +   +F +LPAG
Sbjct: 659 QKPLVTTRAMEHLHFRQLPAG 679



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/145 (34%), Positives = 78/145 (53%), Gaps = 14/145 (9%)

Query: 1129 RPEIGDKFSSRHGQKGVI--------GLIVEQEDMPFNESG-ICPDIIMNPHGLKGCDRI 1179
            RP+  +    RHG    +        G  V  ED+   ++  + PD    P+  +   R 
Sbjct: 735  RPDRSNTMGMRHGSYDKLDDDGLAPPGTKVSGEDVIIGKTTPLAPDEAQGPNAARYTRR- 793

Query: 1180 TEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1239
                +  +S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G
Sbjct: 794  ----DHSISLRHSENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVG 849

Query: 1240 LIVEQEDMPFNESGICPDIIMNPHG 1264
            +   QEDMP+   GI PDII+NPH 
Sbjct: 850  MTYTQEDMPWTVEGITPDIIVNPHA 874



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 57/121 (47%), Gaps = 14/121 (11%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           K+  +  AR+ L    + H+ V       KA Y   ++ R++L        DDRD+YGNK
Sbjct: 232 KEKRIKYAREILQKEMLPHVGVGEYCETKKAYYFGYIVHRLLLCALGRRPEDDRDHYGNK 291

Query: 509 RLELAGSLLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYG 554
           RL+LAG LL  +F  +F++   ++           K+ NL   +    + SG  + L  G
Sbjct: 292 RLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDQGKDVNLQFAIKAKTITSGLKYSLATG 351

Query: 555 N 555
           N
Sbjct: 352 N 352



 Score = 44.7 bits (104), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 19/68 (27%)

Query: 358 PHECRLRDLTYSAPITVDIEYTRGSQRVVR--------------SDLVIGRMPIMLQSSK 403
           P   RLR+LTYSAP+ VD+     ++RV++              + + IG++PIML+SS 
Sbjct: 7   PKAARLRNLTYSAPLYVDV-----TKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSY 61

Query: 404 CVLRNKTE 411
           C L + +E
Sbjct: 62  CTLYHNSE 69


>gi|55273987|gb|AAV48864.1| RNA polymerase II second largest subunit [Albatrellus higanensis]
          Length = 913

 Score =  216 bits (550), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 547  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLRF 606

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 607  RELPAGQNAVVAILCYSGYNQEDSVIMNQSSIDRGLFRSMYYRSYMDLEKKSGVQQLEEF 666

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  E   R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 667  EKPTRENTLRMKHGTYDKLEDDGLIAPGTNVNGEDIIIGKTAPIPPDSEELGQRTKTHSR 726

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++N+E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 727  RDVSTPLKSTESGIIDQVLLTTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGIAY 786

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PD+I+NPH +
Sbjct: 787  RQEDMPFTAEGITPDLIINPHAI 809



 Score =  187 bits (476), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 88/184 (47%), Positives = 119/184 (64%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++N+E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 727  RDVSTPLKSTESGIIDQVLLTTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGIAY 786

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PD+I+NPH  PSRMT+G L+E L  K   + G   + T F    +  
Sbjct: 787  RQEDMPFTAEGITPDLIINPHAIPSRMTIGHLVECLLSKVATLLGQEGDATPFTDLTVES 846

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
            V   L   GY  +G +I Y G TG  L+A +Y GP YYQ+LKHMV DKIH+R+RGP  +L
Sbjct: 847  VSHFLREKGYQSRGLEIMYHGHTGRKLQAQVYLGPTYYQRLKHMVDDKIHSRARGPVQIL 906

Query: 1363 TRQP 1366
            TRQP
Sbjct: 907  TRQP 910



 Score =  110 bits (276), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 94/151 (62%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKM-ERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++ +TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 220 EFNLSLAVKHNTITNGLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNT 279

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNL+LM+ I+  +    +++ +  
Sbjct: 280 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSVISVGSLSAPVIEFLEE 339

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E  ++      S+P    VFVNG+  G+
Sbjct: 340 WGLE--SLEENAHSSTPCTK-VFVNGVWMGV 367



 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/97 (44%), Positives = 57/97 (58%), Gaps = 14/97 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LGVCA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 531 THCEIHPSMILGVCASI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYLTN 576

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
              R+DT+   L Y Q+P+  ++++    F +LPAG+
Sbjct: 577 FLVRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQ 613



 Score = 58.5 bits (140), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 58/114 (50%), Gaps = 14/114 (12%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A++ L    + H+ +       KA +   MI R++LA  +   LDDRD++G KRL+LAG 
Sbjct: 131 AQEILQKEMLPHVSMNEGSESKKAYFFGYMIHRLLLAALERRDLDDRDHFGKKRLDLAGP 190

Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYGN 555
           LL+ +F  +F++   ++           KE NLS  V    + +G  + L  GN
Sbjct: 191 LLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLSLAVKHNTITNGLKYSLATGN 244


>gi|110669594|gb|ABG81892.1| RNA polymerase II second largest subunit [Mycoblastus sanguinarius]
          Length = 709

 Score =  216 bits (550), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 115/290 (39%), Positives = 174/290 (60%), Gaps = 11/290 (3%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 361  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDQRMDTMANILYYPQKPLATTRSMEFLKF 420

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR+     K+      ++ 
Sbjct: 421  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSVVEQF 480

Query: 1034 LGPLLEADTRKPVY-RHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKE 1092
              P + +DT K  +  +  LD DGIVAPG ++    +++ K+ P I+  A  +   +  +
Sbjct: 481  EKP-MRSDTLKLKHGTYEKLDDDGIVAPGVRVSGEDIIIGKTAP-IAPDAEELG--QRTK 536

Query: 1093 VPVSYKGSVP------SYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVI 1146
            + V    S P        +++VL+S+NS+    +K+ +R T+ P+IGDKF+SRHGQKG I
Sbjct: 537  LHVKRDASTPLRSTENGIVDQVLLSTNSDGLRFVKVRMRTTKIPQIGDKFASRHGQKGTI 596

Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSY 1196
            G+   QEDMPF   G+ PD+I+NPH +     I    E  +S   S+  Y
Sbjct: 597  GITYRQEDMPFTGEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGY 646



 Score =  157 bits (397), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 88/244 (36%), Positives = 131/244 (53%), Gaps = 25/244 (10%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESG-ICPDIIMNPHGL 1173
            ++ Q  +P   D    +HG        G++  G+ V  ED+   ++  I PD        
Sbjct: 476  VVEQFEKPMRSDTLKLKHGTYEKLDDDGIVAPGVRVSGEDIIIGKTAPIAPD-------- 527

Query: 1174 KGCDRITEYKEVPVSYKGSVP------SYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDK 1227
               + + +  ++ V    S P        +++VL+S+NS+    +K+ +R T+ P+IGDK
Sbjct: 528  --AEELGQRTKLHVKRDASTPLRSTENGIVDQVLLSTNSDGLRFVKVRMRTTKIPQIGDK 585

Query: 1228 FSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEG 1287
            F+SRHGQKG IG+   QEDMPF   G+ PD+I+NPH  PSRMT+  LIE    K   + G
Sbjct: 586  FASRHGQKGTIGITYRQEDMPFTGEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRG 645

Query: 1288 NYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMV 1347
               + T F    +  V   L  HGY  +G ++ Y+G TG  L A ++ GP YYQ+L+HMV
Sbjct: 646  YEGDATPFTEVTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMV 705

Query: 1348 QDKI 1351
             DKI
Sbjct: 706  DDKI 709



 Score =  117 bits (292), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 92/151 (60%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  T+TN L  ++ TGNW   ++    + GV+QVL+R ++ S L  + R N+
Sbjct: 37  EFNMTLAVKSTTLTNGLKYSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNT 96

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT     + ++  M  
Sbjct: 97  PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQ 156

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
             +E +  +  E LSSP    +FVNG+  G+
Sbjct: 157 RNMEVLEEY--EPLSSPNATKIFVNGVWVGV 185



 Score = 90.5 bits (223), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 345 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 390

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 391 YDQRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 430


>gi|357216641|gb|AET71054.1| RNA polymerase II second largest subunit, partial [Trametes aff.
            maxima FPRI101]
          Length = 663

 Score =  216 bits (550), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 351  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLRF 410

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 411  RELPAGQNAVVAILCYSGYNQEDSVIMNQSSIDRGLFRSMYYRSYMDLEKKSGIQQLEEF 470

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 471  EKPTRDTTLRMKHGTYDKLEDDGLIAPGTNVNGEDIIIGKTAPIPPDSEELGQRTRTHTK 530

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++N+E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 531  RDVSTPLKSTEQGIIDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 590

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 591  RQEDMPFTAEGITPDIIINPHAI 613



 Score =  124 bits (311), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 58/130 (44%), Positives = 82/130 (63%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++N+E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 531  RDVSTPLKSTEQGIIDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 590

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 591  RQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVES 650

Query: 1303 VQEELIRHGY 1312
            V + L + GY
Sbjct: 651  VSQFLRQKGY 660



 Score =  110 bits (276), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 94/151 (62%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++ +TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 40  EFNLSLAVKHNTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT 99

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNL+LM+ I+  +    +++ +  
Sbjct: 100 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSCISVGSLSAPVIEFLEE 159

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E  ++      S+P    VFVNG+  G+
Sbjct: 160 WGLE--SLEENAHSSTPCTK-VFVNGVWMGV 187



 Score = 87.8 bits (216), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 76/162 (46%), Gaps = 43/162 (26%)

Query: 691 RFDDFLYEGKIEYLDVNEGNDSHIAVS----------ESGIRPGVT-------------- 726
           ++D+ + +G IE LD  E     I ++           +GI P                 
Sbjct: 270 KWDNLIKDGVIELLDAEEEETVMICMTPEDLENSRLQAAGIDPHANDGEVDPSARLKAPT 329

Query: 727 -----THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMG 781
                TH EI P  +LGVCA I              +P+P HNQ+PRNTYQ AMGKQAMG
Sbjct: 330 NAHTWTHCEIHPSMILGVCASI--------------IPFPDHNQSPRNTYQSAMGKQAMG 375

Query: 782 CIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
               N   R+DT+   L Y Q+P+  ++++    F +LPAG+
Sbjct: 376 IYLTNFLVRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQ 417


>gi|300394684|gb|ADK11880.1| DNA-directed RNA polymerase II subunit two, partial [Coniophora
            arida]
          Length = 687

 Score =  216 bits (550), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 351  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKF 410

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 411  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEF 470

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  ++ DG++APG  +    +++ K+ P    S        T   
Sbjct: 471  EKPTRDTTLRMKHGTYDKIEDDGLIAPGTGVSGEDIIIGKTAPIPPDSEELGQRTRTHTR 530

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 531  RDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITY 590

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 591  RQEDMPFTAEGIVPDIIINPHAI 613



 Score =  147 bits (371), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 70/157 (44%), Positives = 97/157 (61%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 531  RDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITY 590

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 591  RQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVES 650

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVY 1339
            V   L + GY  +G ++ Y G TG  L+A +Y GP Y
Sbjct: 651  VSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTY 687



 Score =  112 bits (279), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 58/151 (38%), Positives = 91/151 (60%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKM-ERQGVTQVLSRLSYISGLGMMTRINS 243
           +F+I   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 43  EFNISLAVKHQTITNGLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNT 102

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM+ I+  +    +++ +  
Sbjct: 103 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSFSAPVIEFLEE 162

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E +        SS     VFVNG+  G+
Sbjct: 163 WGLESL---EENAHSSTVCTKVFVNGVWMGV 190



 Score = 90.1 bits (222), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 46/109 (42%), Positives = 62/109 (56%), Gaps = 14/109 (12%)

Query: 718 ESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGK 777
           +SGI     TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGK
Sbjct: 326 KSGINAHTWTHCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGK 371

Query: 778 QAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
           QAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 372 QAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAI 420


>gi|56694324|gb|AAW22902.1| RNA polymerase II second largest subunit [Zamia integrifolia]
          Length = 556

 Score =  216 bits (549), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 110/261 (42%), Positives = 161/261 (61%), Gaps = 1/261 (0%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 218  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHF 277

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L YR+ +   K+      +  
Sbjct: 278  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFYRSYRDEEKRMGTLVKEEF 337

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMP-TISVSAISMATPEYKE 1092
              P  E  T      +  LD DG+  PG ++    V++ K+ P T   S    A    ++
Sbjct: 338  GRPNRENTTGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPVTQDESGGQAARYTKRD 397

Query: 1093 VPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQ 1152
               S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   Q
Sbjct: 398  QSTSLRHSXSGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYCQ 457

Query: 1153 EDMPFNESGICPDIIMNPHGL 1173
            EDMP+   GI PDII+NPH +
Sbjct: 458  EDMPWTVEGITPDIIVNPHAI 478



 Score =  144 bits (363), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 68/161 (42%), Positives = 101/161 (62%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++   S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+  
Sbjct: 396  RDQSTSLRHSXSGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTY 455

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMP+   GI PDII+NPH  PSRMT+G+LIE + GK     G   + T F    + +
Sbjct: 456  CQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDN 515

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKL 1343
            + + L + GY  +G +  Y+G TG  L A I+ GP YYQ+L
Sbjct: 516  ISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRL 556



 Score = 98.2 bits (243), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/142 (39%), Positives = 79/142 (55%), Gaps = 25/142 (17%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGI------RPGVT-----THLEIAPFTLLGVC 740
           + + + +G IEY+D  E   + I+++ + +       P  T     TH EI P  +LGVC
Sbjct: 156 WHELVTKGFIEYVDTEEEETTMISMTINDLVNARKSPPNATSIVKYTHCEIHPSLILGVC 215

Query: 741 AGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVY 800
           A I              +P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y
Sbjct: 216 ASI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYY 261

Query: 801 AQRPMVESKTIRITNFHKLPAG 822
            Q+P+V ++ +   +F +LPAG
Sbjct: 262 PQKPLVTTRAMEHLHFRQLPAG 283



 Score = 63.9 bits (154), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/75 (45%), Positives = 46/75 (61%), Gaps = 8/75 (10%)

Query: 263 GMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMFNGEELSS--- 319
           GM+CP++TPEG+ACGLVKNLALM +IT  +    +L+ +     E  +  N EE+S    
Sbjct: 1   GMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFL-----EEWSTENFEEISPAVI 55

Query: 320 PGVYLVFVNGILAGI 334
           P    +FVNG   GI
Sbjct: 56  PNATKIFVNGCWVGI 70


>gi|45120572|gb|AAO64666.2| RNA polymerase II subunit RPB2, partial [Lycoperdon pyriforme]
          Length = 849

 Score =  216 bits (549), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 514  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKF 573

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 574  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEF 633

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  E   R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 634  EKPTRETTLRMKHGTYDKLEDDGLIAPGTGVRGEDIIIGKTAPIPPDSEELGQRTRTHTR 693

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 694  RDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITY 753

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PD+++NPH +
Sbjct: 754  RQEDMPFTAEGIVPDLVINPHAI 776



 Score =  143 bits (360), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 67/156 (42%), Positives = 96/156 (61%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 694  RDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITY 753

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PD+++NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 754  RQEDMPFTAEGIVPDLVINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVES 813

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPV 1338
            V   L + GY  +G ++ Y G TG  L+A +Y GP 
Sbjct: 814  VSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPT 849



 Score =  110 bits (276), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 93/151 (61%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 208 EFNLALAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT 267

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM+ I+  +    +++ +  
Sbjct: 268 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSYSAPVIEFLEE 327

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E  ++      ++P    VFVNG+  G+
Sbjct: 328 WGLE--SLEENAHSATPCTK-VFVNGVWMGV 355



 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/121 (38%), Positives = 66/121 (54%), Gaps = 14/121 (11%)

Query: 706 VNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQ 765
            N+G+    A  ++G      TH EI P  +LG+CA I              +P+P HNQ
Sbjct: 477 ANDGDFDPAARLKAGTHAHTWTHCEIHPSMILGICASI--------------IPFPDHNQ 522

Query: 766 APRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQ 825
           +PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  
Sbjct: 523 SPRNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNA 582

Query: 826 I 826
           I
Sbjct: 583 I 583



 Score = 58.5 bits (140), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 14/114 (12%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A++ L    + H+ +       KA +   MI R++LA  +   LDDRD++G KRL+LAG 
Sbjct: 119 AQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAALERRELDDRDHFGKKRLDLAGP 178

Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYGN 555
           LL+ +F  +F++   ++           KE NL+  V    + +G  + L  GN
Sbjct: 179 LLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLALAVKHQTITNGLKYSLATGN 232


>gi|365927722|gb|AEX07765.1| RNA polymerase II subunit 2 [Junghuhnia pseudozilingiana]
          Length = 360

 Score =  216 bits (549), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 18   IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLRF 77

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 78   RELPAGQNAVVAILCYSGYNQEDSVIMNQSSVDRGLFRSMYYRSYMDLEKKSGVQQLEEF 137

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  E   R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 138  EKPTRENTLRMKHGTYDKLEDDGLIAPGTNVNGEDIIIGKTAPIPPDSEELGQRTKTHSR 197

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++N+E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 198  RDVSTPLKSTESGIIDQVLLTTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGIAY 257

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDI++NPH +
Sbjct: 258  RQEDMPFTSEGITPDIVINPHAI 280



 Score =  154 bits (388), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 73/163 (44%), Positives = 101/163 (61%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++N+E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 198  RDVSTPLKSTESGIIDQVLLTTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGIAY 257

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDI++NPH  PSRMT+G L+E L  K   + G   + T F    +  
Sbjct: 258  RQEDMPFTSEGITPDIVINPHAIPSRMTIGHLVECLLSKVATLLGQEGDATPFTDLTVEG 317

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKH 1345
            V   L   GY  +G +I Y G TG  L+A +Y GP YYQ+LKH
Sbjct: 318  VSHYLRDKGYQSRGLEIMYHGHTGRKLQAQVYLGPTYYQRLKH 360



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 81/156 (51%), Gaps = 22/156 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LGVCA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 2   THCEIHPSMILGVCASI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYLTN 47

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQISPGGAEELTARESCHEVLKI 846
              R+DT+   L Y Q+P+  ++++    F +LPAG+  +    A    +  +  + + +
Sbjct: 48  FLVRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNAVV---AILCYSGYNQEDSVIM 104

Query: 847 ISFSISVAVFDSVWLG-----DVKQGVHQLSEEKEP 877
              S+   +F S++       + K GV QL E ++P
Sbjct: 105 NQSSVDRGLFRSMYYRSYMDLEKKSGVQQLEEFEKP 140


>gi|320172586|gb|ADW24176.1| RNA polymerase II second largest subunit [Gloeophyllum sepiarium]
          Length = 341

 Score =  216 bits (549), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 107/263 (40%), Positives = 163/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 10   IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLRF 69

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 70   RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEF 129

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS-AISMATPEY-- 1090
              P  E   R     +  ++ DG +APG  +    +++ K+ P    S  +   T  +  
Sbjct: 130  EKPTRETTLRMKHGTYDKIEDDGFIAPGTGVNGDDIIIGKTAPIPPDSEELGQRTRSHTR 189

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V  + K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 190  RDVSTALKSTESGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITY 249

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 250  RQEDMPFTAEGITPDIIINPHAI 272



 Score =  141 bits (355), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 67/152 (44%), Positives = 95/152 (62%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V  + K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 190  RDVSTALKSTESGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITY 249

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 250  RQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVES 309

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIY 1334
            V   L + GY  +G ++ Y G TG  L+A +Y
Sbjct: 310  VSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVY 341



 Score = 79.3 bits (194), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/147 (34%), Positives = 76/147 (51%), Gaps = 22/147 (14%)

Query: 736 LLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLM 795
           +LGVCA I              +P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+ 
Sbjct: 3   ILGVCASI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMA 48

Query: 796 YNLVYAQRPMVESKTIRITNFHKLPAGKCQISPGGAEELTARESCHEVLKIISFSISVAV 855
             L Y Q+P+  ++++    F +LPAG+  I    A    +  +  + + +   SI   +
Sbjct: 49  NILYYPQKPLATTRSMEYLRFRELPAGQNAIV---AILCYSGYNQEDSVIMNQSSIDRGL 105

Query: 856 FDSVWLG-----DVKQGVHQLSEEKEP 877
           F S++       + K GV QL E ++P
Sbjct: 106 FRSIYYRSYMDLEKKSGVQQLEEFEKP 132


>gi|68131844|gb|AAY85200.1| RNA polymerase II second largest subunit [Coriaria sarmentosa]
          Length = 952

 Score =  216 bits (549), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 110/271 (40%), Positives = 166/271 (61%), Gaps = 20/271 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 613  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 672

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG  A +A+  YSGY+ ED++IMN++S+DRGF R L +R+ +           ++ 
Sbjct: 673  RQLPAGIYAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR---------DEEKK 723

Query: 1034 LGPLLEADTRKPV------YRHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            +G L++ D  +P        RH +   LD DG+  PG ++    V++ K+ P     A  
Sbjct: 724  MGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDEAQG 783

Query: 1085 MATPEY--KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQ 1142
             A   Y   +  +S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQ
Sbjct: 784  QAAARYTRSDHSISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 843

Query: 1143 KGVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            KG +G+   QEDMP+   GI PDII+NPH +
Sbjct: 844  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAI 874



 Score =  144 bits (364), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 68/157 (43%), Positives = 100/157 (63%)

Query: 1187 VSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQED 1246
            +S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   QED
Sbjct: 796  ISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 855

Query: 1247 MPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEE 1306
            MP+   GI PDII+NPH  PSRMT+G+LIE + GK     G   + T F    + ++ + 
Sbjct: 856  MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 915

Query: 1307 LIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKL 1343
            L + GY  +G +  Y+G TG  L A I+ GP YYQ+L
Sbjct: 916  LHKCGYQMRGFETMYNGHTGRQLSAMIFLGPTYYQRL 952



 Score =  120 bits (301), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 66/152 (43%), Positives = 91/152 (59%), Gaps = 11/152 (7%)

Query: 192 MRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKV 251
           ++  TIT+ L  ++ TGNW        R GV+QVL+RL+Y S L  + R+NS   +  K+
Sbjct: 335 IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKL 394

Query: 252 SGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAM 311
           + PR L  SQWGM+CP++TPEG+ACGLVKNLALM +IT  +    +L+ +   G E    
Sbjct: 395 AKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTE---- 450

Query: 312 FNGEELSS---PGVYLVFVNGILAGITCHHKE 340
            N EE+S    P    +FVNG   GI   H+E
Sbjct: 451 -NFEEISPAVIPQATKIFVNGCWVGI---HRE 478



 Score = 99.4 bits (246), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/144 (40%), Positives = 78/144 (54%), Gaps = 30/144 (20%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVT-------------THLEIAPFTLLG 738
           + D + +G IEY+D  E   + I+++   IR  V              TH EI P  +LG
Sbjct: 552 WHDLVSKGFIEYIDTEEEETTMISMT---IRDLVQARNSPEEAYSDNYTHCEIHPSLILG 608

Query: 739 VCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNL 798
           VCA I              +P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L
Sbjct: 609 VCASI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVL 654

Query: 799 VYAQRPMVESKTIRITNFHKLPAG 822
            Y Q+P+V ++ +   +F +LPAG
Sbjct: 655 YYPQKPLVTTRAMEHLHFRQLPAG 678



 Score = 55.1 bits (131), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 14/114 (12%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A++ L    + H+ V       KA Y   +I R++L        DDRD+YGNKRL+LAG 
Sbjct: 239 AKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP 298

Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYGN 555
           LL  +F  +F++   ++           K+ NL   +    + SG  + L  GN
Sbjct: 299 LLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGN 352



 Score = 44.3 bits (103), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 19/68 (27%)

Query: 358 PHECRLRDLTYSAPITVDIEYTRGSQRVVR--------------SDLVIGRMPIMLQSSK 403
           P   RLR+LTYSAP+ VD+     ++RV++              + + IG++PIML+SS 
Sbjct: 7   PKAARLRNLTYSAPLYVDV-----TKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSY 61

Query: 404 CVLRNKTE 411
           C L   +E
Sbjct: 62  CTLFQNSE 69


>gi|55584696|gb|AAV53579.1| RNA polymerase II second largest subunit [Collybia tuberosa]
          Length = 700

 Score =  216 bits (549), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 345  IIPFPDHNQSPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKF 404

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 405  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEF 464

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P+ +   R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 465  EKPVRDNTLRMKHGTYDKLEDDGLIAPGTGVAGEDIIIGKTAPIPPDSEELGQRTRTHTR 524

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ +R TR P+ GDKF+SRHGQKG IG+  
Sbjct: 525  RDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRSTRIPQTGDKFASRHGQKGTIGITY 584

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 585  RQEDMPFTAEGIVPDIIINPHAI 607



 Score =  180 bits (457), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 84/176 (47%), Positives = 114/176 (64%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++NSE    +K+ +R TR P+ GDKF+SRHGQKG IG+  
Sbjct: 525  RDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRSTRIPQTGDKFASRHGQKGTIGITY 584

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 585  RQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVES 644

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGP 1358
            V   L + GY  +G ++ Y G TG  L+A +Y GP YYQ+LKHMV DKIH+R+RGP
Sbjct: 645  VSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMVDDKIHSRARGP 700



 Score =  111 bits (278), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 92/151 (60%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 39  EFNLALAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT 98

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM  I+  +    +++ +  
Sbjct: 99  PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEE 158

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E  ++      S+P    VFVNG+  G+
Sbjct: 159 WGLE--SLEENAHSSTPCTK-VFVNGVWMGV 186



 Score = 90.9 bits (224), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 60/177 (33%), Positives = 89/177 (50%), Gaps = 22/177 (12%)

Query: 706 VNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQ 765
           VN+      A  ++GI     TH EI P  +LG+CA I              +P+P HNQ
Sbjct: 308 VNDAEFDPAARLKAGINSHTWTHCEIHPSMILGICASI--------------IPFPDHNQ 353

Query: 766 APRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQ 825
           +PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  
Sbjct: 354 SPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNA 413

Query: 826 ISPGGAEELTARESCHEVLKIISFSISVAVFDSVWLG-----DVKQGVHQLSEEKEP 877
           I    A    +  +  + + +   SI   +F S++       + K GV QL E ++P
Sbjct: 414 IV---AILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKP 467


>gi|347522774|ref|YP_004780344.1| DNA-directed RNA polymerase subunit B [Pyrolobus fumarii 1A]
 gi|343459656|gb|AEM38092.1| DNA-directed RNA polymerase subunit B [Pyrolobus fumarii 1A]
          Length = 1168

 Score =  216 bits (549), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 112/274 (40%), Positives = 164/274 (59%), Gaps = 16/274 (5%)

Query: 915  VPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFH 974
            +PY  HNQ+PRNTYQ AM KQA+G    N Q R DT  + L Y ++P+V+++ + I  F+
Sbjct: 682  IPYAEHNQSPRNTYQAAMAKQALGLYAANFQIRADTRGHLLHYPEKPLVQTRALDIIGFN 741

Query: 975  KLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRIL 1034
              PAGQN  +AV+S++GY+IEDA+IMNK+S+DRG  R   +R      ++Y     D +L
Sbjct: 742  NRPAGQNMVVAVLSFTGYNIEDAIIMNKSSIDRGLARSTFFRLYATEERKYSGGQKD-LL 800

Query: 1035 GPLLEADTR------------KPVYRHRALDQDGIVAPGEQICERQVLVNKSMP---TIS 1079
            G + +   R            KP   +R LD DGIV+P  ++   +VL+ K+ P   +  
Sbjct: 801  GCIDDPQRRPGCIDIKSIIDAKPPIAYRKLDIDGIVSPEVEVESGEVLIGKTAPPKFSEE 860

Query: 1080 VSAISMATPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSR 1139
               I+++T   ++  VS +      ++ V ++  +E   L+K+ +R  R PE GDKF+SR
Sbjct: 861  FREIAVSTERRRDESVSVRHGERGTVDTVFITETNEGFKLVKVRVRDLRIPEFGDKFASR 920

Query: 1140 HGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            HGQKGVIG +V Q DMPF E GI PD+I+NPH  
Sbjct: 921  HGQKGVIGFLVPQYDMPFTEDGITPDLIINPHAF 954



 Score =  180 bits (457), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 88/186 (47%), Positives = 122/186 (65%)

Query: 1187 VSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQED 1246
            VS +      ++ V ++  +E   L+K+ +R  R PE GDKF+SRHGQKGVIG +V Q D
Sbjct: 876  VSVRHGERGTVDTVFITETNEGFKLVKVRVRDLRIPEFGDKFASRHGQKGVIGFLVPQYD 935

Query: 1247 MPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEE 1306
            MPF E GI PD+I+NPH +PSRMT+G+L+E +AGK   +     + T F    + ++Q E
Sbjct: 936  MPFTEDGITPDLIINPHAFPSRMTLGQLLETIAGKVAALSARLIDATPFFKEPVENLQLE 995

Query: 1307 LIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQP 1366
            L+++G++  G +I Y G TGE L   ++ G VYYQKL HMV DKIHAR+ G   +LTRQP
Sbjct: 996  LLKYGFSPDGTEIMYDGRTGEMLRHPVFIGIVYYQKLHHMVADKIHARATGQTQLLTRQP 1055

Query: 1367 TGRRWK 1372
            T  R +
Sbjct: 1056 TEGRAR 1061



 Score = 99.0 bits (245), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/126 (40%), Positives = 76/126 (60%), Gaps = 9/126 (7%)

Query: 192 MRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKV 251
           +R+D ITN L  A+ TGNW       +R GV+Q+L R +++S L  + R+ S   +++  
Sbjct: 406 IRRDIITNKLHDALATGNWP-----GQRTGVSQLLDRTNWLSMLSHLRRVVSPLSRSQPH 460

Query: 252 SGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAM 311
              R L G+ WG +CP +TPEG  CGLVKNLALM +I+   DEK + K++     E+  +
Sbjct: 461 FEARDLHGTHWGRICPFETPEGPNCGLVKNLALMAYISAGVDEKEVEKVIR----ENFEI 516

Query: 312 FNGEEL 317
            + EEL
Sbjct: 517 IDAEEL 522



 Score = 92.4 bits (228), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/139 (35%), Positives = 74/139 (53%), Gaps = 15/139 (10%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G  +F D L  G +E LD  E  ++++A++   I P   TH+EI    + GV A      
Sbjct: 627 GEWKFTDLLKHGIVELLDAEEEENAYVALNPEDITPE-HTHMEIWTPAIFGVTAST---- 681

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                     +PY  HNQ+PRNTYQ AM KQA+G    N Q R DT  + L Y ++P+V+
Sbjct: 682 ----------IPYAEHNQSPRNTYQAAMAKQALGLYAANFQIRADTRGHLLHYPEKPLVQ 731

Query: 808 SKTIRITNFHKLPAGKCQI 826
           ++ + I  F+  PAG+  +
Sbjct: 732 TRALDIIGFNNRPAGQNMV 750



 Score = 48.5 bits (114), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 40/73 (54%), Gaps = 2/73 (2%)

Query: 330 ILAGITCHHKEVCKPEIEESFNYTR-QTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRS 388
           +L GI    + +  P + E     R   TP ECR+RDLTY API V +    G   V   
Sbjct: 64  VLDGIKSGLELLGPPMVREGDGSERTDVTPLECRIRDLTYEAPIRVRVRLIEGVV-VDEQ 122

Query: 389 DLVIGRMPIMLQS 401
           ++V+G +PIML+S
Sbjct: 123 EVVLGMLPIMLRS 135



 Score = 43.5 bits (101), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 35/56 (62%)

Query: 478 KAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
           KA++LA M R+++   +     DD+D+Y NKRL LAG L++++F    +    +++
Sbjct: 332 KALFLADMARKLLELAAGRRQPDDKDHYANKRLLLAGDLIAIVFRTAMRSLYQDIR 387


>gi|395334467|gb|EJF66843.1| DNA-dependent RNA polymerase II second largest subunit [Dichomitus
            squalens LYAD-421 SS1]
          Length = 1222

 Score =  216 bits (549), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 752  IIPFPDHNQSPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLRF 811

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 812  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEF 871

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 872  EKPTRDTTLRMKHGTYDKLEDDGLIAPGTNVNGEDIIIGKTAPIPPDSEELGQRTRTHTK 931

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++N+E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 932  RDVSTPLKSTEQGIVDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 991

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 992  RQEDMPFTAEGITPDIIINPHAI 1014



 Score =  191 bits (486), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 90/188 (47%), Positives = 123/188 (65%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++N+E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 932  RDVSTPLKSTEQGIVDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 991

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 992  RQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLSKLATLIGNEGDATPFTDLTVES 1051

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
            V + L + GY  +G ++ Y G TG  L+A +Y GP YYQ+LKHMV DKIH+R+RGP  +L
Sbjct: 1052 VSQYLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMVDDKIHSRARGPVQIL 1111

Query: 1363 TRQPTGRR 1370
            TRQP   R
Sbjct: 1112 TRQPVEGR 1119



 Score =  112 bits (279), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 93/151 (61%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F+I   ++ +TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 447 EFNISLAVKHNTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT 506

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNL+LM+ I+       +++ +  
Sbjct: 507 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSCISVGTLSAPVIEFLEE 566

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E  ++      S+P    VFVNG+  G+
Sbjct: 567 WGLE--SLEENAHASTPCTK-VFVNGVWMGV 594



 Score = 88.6 bits (218), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 98/219 (44%), Gaps = 50/219 (22%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVS----------ESGIRPGVT--------------- 726
           +D  L +G IE LD  E     I ++           +GI P                  
Sbjct: 673 WDSLLKDGVIELLDAEEEETVMICMTPEDLENSRLQAAGIDPHADEEEDPSARLKAPTSA 732

Query: 727 ---THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCI 783
              TH EI P  +LGVCA I              +P+P HNQ+PRNTYQ AMGKQAMG  
Sbjct: 733 HTWTHCEIHPSMILGVCASI--------------IPFPDHNQSPRNTYQSAMGKQAMGIF 778

Query: 784 GYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQISPGGAEELTARESCHEV 843
             N   R+DT+   L Y Q+P+  ++++    F +LPAG+  I    A    +  +  + 
Sbjct: 779 LTNFLIRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNAIV---AILCYSGYNQEDS 835

Query: 844 LKIISFSISVAVFDSVWLG-----DVKQGVHQLSEEKEP 877
           + +   SI   +F S++       + K GV QL E ++P
Sbjct: 836 VIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKP 874



 Score = 57.8 bits (138), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 14/114 (12%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A++ L    + H+ +       KA +   MI R++LA  +   LDDRD++G KRL+LAG 
Sbjct: 358 AQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAALERRDLDDRDHFGKKRLDLAGP 417

Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYGN 555
           LL+ +F  +F++   ++           KE N+S  V    + +G  + L  GN
Sbjct: 418 LLANLFRMLFRKLTKDVYRYLQKCVETHKEFNISLAVKHNTITNGLKYSLATGN 471



 Score = 42.7 bits (99), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 29/44 (65%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSD 157
           D W ++ SF  +KGLV+  +DSFD F+   +++L+  N+++  D
Sbjct: 33  DCWTVITSFFDQKGLVRQQLDSFDEFVQNTMQELVDENSDLILD 76


>gi|56694326|gb|AAW22903.1| RNA polymerase II second largest subunit [Dioon edule]
          Length = 538

 Score =  216 bits (549), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 110/261 (42%), Positives = 161/261 (61%), Gaps = 1/261 (0%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 191  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHF 250

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L YR+ +   K+      +  
Sbjct: 251  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFYRSYRDEEKRMGTLVKEEF 310

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMP-TISVSAISMATPEYKE 1092
              P  E  T      +  LD DG+  PG ++    V++ K+ P T   S    A    ++
Sbjct: 311  GRPNRENTTGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPVTQDESGGQAARYTKRD 370

Query: 1093 VPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQ 1152
               S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   Q
Sbjct: 371  QSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYCQ 430

Query: 1153 EDMPFNESGICPDIIMNPHGL 1173
            EDMP+   GI PDII+NPH +
Sbjct: 431  EDMPWTVEGITPDIIVNPHAI 451



 Score =  161 bits (407), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 76/170 (44%), Positives = 109/170 (64%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++   S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+  
Sbjct: 369  RDQSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTY 428

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMP+   GI PDII+NPH  PSRMT+G+LIE + GK     G   + T F    + +
Sbjct: 429  CQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDN 488

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIH 1352
            + + L + GY  +G +  Y+G TG  L A I+ GP YYQ+LKHMV DKIH
Sbjct: 489  ISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIH 538



 Score = 97.1 bits (240), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 63/173 (36%), Positives = 85/173 (49%), Gaps = 41/173 (23%)

Query: 677 RPTFLNMHQFLGFKRFD----------------DFLYEGKIEYLDVNEGNDSHIA----- 715
           RP F+  +Q L  K+ D                + + +G IEY+D  E   + I+     
Sbjct: 98  RPLFIVENQRLLIKKSDIRRLQQRDNLPPPGWHELVTKGFIEYVDTEEEETTMISMTIYD 157

Query: 716 -VSESGIRPGVT-----THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRN 769
            V+     P        TH EI P  +LGVCA I              +P+P HNQ+PRN
Sbjct: 158 LVNARNSPPTAASIVKYTHCEIHPSLILGVCASI--------------IPFPDHNQSPRN 203

Query: 770 TYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAG 822
           TYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F +LPAG
Sbjct: 204 TYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG 256


>gi|89274890|gb|ABD65886.1| RNA polymerase II second largest subunit, partial [Ganoderma tsugae]
          Length = 883

 Score =  216 bits (549), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 520  IIPFPDHNQSPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLRF 579

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 580  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEF 639

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 640  EKPTRDTTLRMKHGTYDKLEDDGLIAPGTNVNGEDIIIGKTAPIPPDSEELGQRTRTHTK 699

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++N+E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 700  RDVSTPLKSTEQGIVDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 759

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 760  RQEDMPFTAEGITPDIIINPHAI 782



 Score =  192 bits (487), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 90/184 (48%), Positives = 122/184 (66%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++N+E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 700  RDVSTPLKSTEQGIVDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 759

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 760  RQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLSKLATLIGNEGDATPFTDLTVES 819

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
            V + L + GY  +G +I Y G TG  L+A +Y GP YYQ+LKHMV DKIH+R+RGP  +L
Sbjct: 820  VSQFLRQKGYQSRGLEIMYHGHTGRKLQAQVYLGPTYYQRLKHMVDDKIHSRARGPVQIL 879

Query: 1363 TRQP 1366
            TRQP
Sbjct: 880  TRQP 883



 Score =  112 bits (279), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 93/151 (61%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F+I   ++ +TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 215 EFNISLAVKHNTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT 274

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNL+LM+ I+       +++ +  
Sbjct: 275 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSCISVGTLSAPVIEFLEE 334

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E  ++      S+P    VFVNG+  G+
Sbjct: 335 WGLE--SLEENAHASTPCTK-VFVNGVWMGV 362



 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 98/219 (44%), Gaps = 50/219 (22%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVS----------ESGIRPGVT--------------- 726
           +D  L +G IE LD  E     I ++           +GI P                  
Sbjct: 441 WDSLLKDGVIELLDAEEEETVMICMTPEDLENSRLQAAGIDPHADEENDPSARLKAPTSA 500

Query: 727 ---THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCI 783
              TH EI P  +LGVCA I              +P+P HNQ+PRNTYQ AMGKQAMG  
Sbjct: 501 HTWTHCEIHPSMILGVCASI--------------IPFPDHNQSPRNTYQSAMGKQAMGIF 546

Query: 784 GYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQISPGGAEELTARESCHEV 843
             N   R+DT+   L Y Q+P+  ++++    F +LPAG+  I    A    +  +  + 
Sbjct: 547 LTNFLIRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNAIV---AILCYSGYNQEDS 603

Query: 844 LKIISFSISVAVFDSVWLG-----DVKQGVHQLSEEKEP 877
           + +   SI   +F S++       + K GV QL E ++P
Sbjct: 604 VIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKP 642



 Score = 58.2 bits (139), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 14/114 (12%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A++ L    + H+ +       KA +   MI R++LA  +   LDDRD++G KRL+LAG 
Sbjct: 126 AQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAALERRDLDDRDHFGKKRLDLAGP 185

Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYGN 555
           LL+ +F  +F++   ++           KE N+S  V    + +G  + L  GN
Sbjct: 186 LLANLFRMLFRKLTKDVYRYLQKCVETHKEFNISLAVKHNTITNGLKYSLATGN 239


>gi|52699866|gb|AAU86994.1| DNA-dependent RNA polymerase II second largest subunit [Rhizocarpon
            disporum]
          Length = 716

 Score =  216 bits (549), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 108/264 (40%), Positives = 164/264 (62%), Gaps = 5/264 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 366  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDQRMDTMANILYYPQKPLATTRSMEFLKF 425

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR      K+      ++ 
Sbjct: 426  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSVDRGLFRSLFYRAYTDQEKRVGTSVVEQF 485

Query: 1034 LGPLLEADTRKPVY-RHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAISMATPEY- 1090
              P + +DT K  +  +  LD DGIVAPG +I    +++ K+ P       +   T  + 
Sbjct: 486  EKP-MRSDTLKLKHGTYDKLDDDGIVAPGVRISGEDIIIGKTAPIAPDAEELGQRTKLHV 544

Query: 1091 -KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             ++V    + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHGQKG IG+ 
Sbjct: 545  KRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGIT 604

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
              QEDMPF   GI PD+I+NPH +
Sbjct: 605  YRQEDMPFTSEGIVPDLIINPHAI 628



 Score =  157 bits (397), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 86/240 (35%), Positives = 131/240 (54%), Gaps = 13/240 (5%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESG-ICPDIIMNPHGL 1173
            ++ Q  +P   D    +HG        G++  G+ +  ED+   ++  I PD       L
Sbjct: 481  VVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRISGEDIIIGKTAPIAPDA----EEL 536

Query: 1174 KGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
                ++   ++V    + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHG
Sbjct: 537  GQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHG 596

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGT 1293
            QKG IG+   QEDMPF   GI PD+I+NPH  PSRMT+  LIE    K   + G   + T
Sbjct: 597  QKGTIGITYRQEDMPFTSEGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDAT 656

Query: 1294 AFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHA 1353
             F    +  V   L  HGY  +G ++ Y+G TG  L A ++ GP YYQ+L+HMV  KI A
Sbjct: 657  PFTDVTVDSVSSLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVXXKIXA 716



 Score =  107 bits (268), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 51/151 (33%), Positives = 90/151 (59%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  T+T+ L  ++ TGNW   ++    + GV+QVL+R ++ S L  + R N+
Sbjct: 43  EFNLTLGVKSTTLTSGLKYSLATGNWGEQKKAASSKAGVSQVLNRYTFASTLSHLRRTNT 102

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACG+VKNLALM +IT     + ++  M  
Sbjct: 103 PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGVVKNLALMCYITVGTPSEPIIDFMVQ 162

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
             ++ +  +  E  S P    +FVNG+  G+
Sbjct: 163 RSMDLLEEY--EPQSYPNATKIFVNGVWVGV 191



 Score = 90.5 bits (223), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 350 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 395

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 396 YDQRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 435


>gi|68300792|gb|AAY89339.1| RNA polymerase II second largest subunit [Berberidopsis corallina]
          Length = 853

 Score =  216 bits (549), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 110/270 (40%), Positives = 167/270 (61%), Gaps = 19/270 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 593  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHF 652

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L +R+ +           ++ 
Sbjct: 653  RQLPAGINAIVAITCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR---------DEEKK 703

Query: 1034 LGPLLEADTRKPV------YRHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            +G L++ D  +P        RH +   LD DG+  PG ++    V++ K+ P     A  
Sbjct: 704  MGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDAQG 763

Query: 1085 MATP-EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1143
             A+    ++   S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQK
Sbjct: 764  QASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQK 823

Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G +G+   QEDMP+   GI PDII+NPH +
Sbjct: 824  GTVGMTYTQEDMPWTVEGITPDIIVNPHAI 853



 Score =  113 bits (283), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 60/141 (42%), Positives = 85/141 (60%), Gaps = 8/141 (5%)

Query: 192 MRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKV 251
           ++  TIT+ L  ++ TGNW        R GV+QVL+RL+Y S L  + R+NS   +  K+
Sbjct: 335 IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKL 394

Query: 252 SGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAM 311
           + PR L  S WGM+CP++TPEG+ACGLVKNLALM +IT  +    +L+ +     E  + 
Sbjct: 395 AKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFL-----EEWST 449

Query: 312 FNGEELSS---PGVYLVFVNG 329
            N EE+S    P    +FVNG
Sbjct: 450 ENFEEISPAVIPQATKIFVNG 470



 Score = 99.8 bits (247), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/141 (39%), Positives = 78/141 (55%), Gaps = 24/141 (17%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVS-----ESGIRPG-----VTTHLEIAPFTLLGVCA 741
           + D + +G IEY+D  E   + I+++      + + P        TH EI P  +LGVCA
Sbjct: 532 WHDLVAKGFIEYVDTEEEETTMISMTINDLITAKLNPEEAYSETYTHCEIHPSLILGVCA 591

Query: 742 GIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYA 801
            I              +P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y 
Sbjct: 592 SI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYP 637

Query: 802 QRPMVESKTIRITNFHKLPAG 822
           Q+P+V ++ +   +F +LPAG
Sbjct: 638 QKPLVTTRAMEHLHFRQLPAG 658



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 37/78 (47%), Positives = 54/78 (69%)

Query: 1187 VSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQED 1246
             S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   QED
Sbjct: 775  TSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 834

Query: 1247 MPFNESGICPDIIMNPHG 1264
            MP+   GI PDII+NPH 
Sbjct: 835  MPWTVEGITPDIIVNPHA 852



 Score = 54.3 bits (129), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 14/114 (12%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A++ L    + H+ V       KA Y   +I R++L        DDRD+YGNKRL+LAG 
Sbjct: 239 AKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP 298

Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYGN 555
           LL  +F  +F++   ++           K+ NL   +    + SG  + L  GN
Sbjct: 299 LLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGN 352



 Score = 43.5 bits (101), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 19/68 (27%)

Query: 358 PHECRLRDLTYSAPITVDIEYTRGSQRVVR--------------SDLVIGRMPIMLQSSK 403
           P   RLR+LTYSAP+ VD+     ++RV++              + + IG++PIML+SS 
Sbjct: 7   PKAARLRNLTYSAPLYVDV-----TKRVIKKGHDCEEVTETQDFTKVFIGKVPIMLRSSY 61

Query: 404 CVLRNKTE 411
           C +   +E
Sbjct: 62  CTVYQNSE 69


>gi|418204392|gb|AFX61750.1| RNA polymerase II second-largest subunit, partial [Ascosphaera
            torchioi]
          Length = 1137

 Score =  216 bits (549), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 107/263 (40%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R++T+   + Y Q+P+  ++++    F
Sbjct: 762  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDQRMETMANIIYYPQKPLATTRSMEFLKF 821

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR      K       +R 
Sbjct: 822  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMVGLTVVERF 881

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS-AISMATPEYKE 1092
              PL     R     +  LD DGIV PG ++    +++ K+ P    S    M T  + +
Sbjct: 882  EKPLRSDTLRMKHGTYDKLDHDGIVCPGVRVSGEDIIIGKTAPLAPESEEQGMRTKSHTK 941

Query: 1093 VPVS--YKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            + VS   + +    +++VL+S++++D   +K+ +R T+ P+IGDKF+SRHGQKG IG+  
Sbjct: 942  LDVSTPLRSTENGIVDQVLLSTSNDDLKFVKVRMRATKVPQIGDKFASRHGQKGTIGITY 1001

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PD+I+NPH +
Sbjct: 1002 RQEDMPFTREGIVPDLIINPHAI 1024



 Score =  181 bits (458), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 84/176 (47%), Positives = 116/176 (65%)

Query: 1197 LEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICP 1256
            +++VL+S++++D   +K+ +R T+ P+IGDKF+SRHGQKG IG+   QEDMPF   GI P
Sbjct: 956  VDQVLLSTSNDDLKFVKVRMRATKVPQIGDKFASRHGQKGTIGITYRQEDMPFTREGIVP 1015

Query: 1257 DIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQG 1316
            D+I+NPH  PSRMT+  LIE    K   + G   + T F    +  V   L  HGY  +G
Sbjct: 1016 DLIINPHAIPSRMTIAHLIECQLSKVSALRGFEGDATPFTDVTVDSVSGLLREHGYQSRG 1075

Query: 1317 KDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
             ++ Y+G TG  L A ++ GP YYQ+L+HMV DKIHAR+RGP  +LTRQP   R +
Sbjct: 1076 FEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRAR 1131



 Score =  108 bits (270), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 54/144 (37%), Positives = 84/144 (58%), Gaps = 3/144 (2%)

Query: 192 MRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRK 250
           ++  T++  L  A+ TGNW   ++    + GV+QVL+R +Y S L  + R N+   +  K
Sbjct: 444 VKASTLSGGLKYALATGNWGEQKKAASSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGK 503

Query: 251 VSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIA 310
           ++ PR L  + WG++CP++TPEG+ACGLVKNLALM  IT     + ++  M    +E + 
Sbjct: 504 IAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCSITVGTPSEPIIDFMIQRNMEVLE 563

Query: 311 MFNGEELSSPGVYLVFVNGILAGI 334
            +  E   SP    VFVNG+  G+
Sbjct: 564 EY--EPQVSPNATKVFVNGVWVGV 585



 Score = 87.4 bits (215), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 41/100 (41%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 746 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 791

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R++T+   + Y Q+P+  ++++    F +LPAG+  I
Sbjct: 792 FDQRMETMANIIYYPQKPLATTRSMEFLKFRELPAGQNAI 831



 Score = 51.6 bits (122), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 2/78 (2%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMV-LALSDPDMLDDRDYYGNKRLELAG 514
           AR+ +    + HI         KA +L  M+ R++  AL   D +DDRD++G KRL+LAG
Sbjct: 348 AREIIQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRD-VDDRDHFGKKRLDLAG 406

Query: 515 SLLSLMFEDVFKRFNSEL 532
            LL+ +F  +F R   +L
Sbjct: 407 PLLAGLFRTLFMRLTKDL 424


>gi|126460694|ref|YP_001056972.1| DNA-directed RNA polymerase subunit B [Pyrobaculum calidifontis JCM
            11548]
 gi|126250415|gb|ABO09506.1| DNA-directed RNA polymerase, subunit B' / DNA-directed RNA
            polymerase, subunit B' [Pyrobaculum calidifontis JCM
            11548]
          Length = 1127

 Score =  216 bits (549), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 106/266 (39%), Positives = 167/266 (62%), Gaps = 10/266 (3%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++PY  HNQ+PRN Y+ AM KQ++G    N   ++D+  + L Y +RP+V ++ + +  +
Sbjct: 661  IIPYLEHNQSPRNQYEAAMAKQSLGLPQSNFLYKLDSRGHMLYYPERPIVTTRGLELVGY 720

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             K PAGQNA +A+++Y+GY+IEDA+I+NKAS++RG  R + YR  +   ++YP    DRI
Sbjct: 721  SKRPAGQNAVVALLTYTGYNIEDAVILNKASVERGMFRSVFYRTYETEEQKYPGGEEDRI 780

Query: 1034 LGPLLEADTRKPVYR----HRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMA--T 1087
              P    D+    YR    +  LD+DGI  P   +   +VL+ K+ P    + +      
Sbjct: 781  EVP----DSSVKGYRGPEAYSHLDEDGIAPPEVYVSSNEVLIGKTSPPRFYTTLETERIL 836

Query: 1088 PEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
             E ++  V+ +      +++V+++ + E   L+K+ LR+ R PE+GDKF+SRHGQKGV+G
Sbjct: 837  KERRDASVAVRRGEKGIVDRVIITESPEGNKLVKVRLRELRIPELGDKFASRHGQKGVVG 896

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            +++ QEDMPF E GI PDII+NPH L
Sbjct: 897  MLLRQEDMPFTEDGIVPDIIVNPHAL 922



 Score =  207 bits (528), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 98/192 (51%), Positives = 136/192 (70%)

Query: 1179 ITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVI 1238
            + E ++  V+ +      +++V+++ + E   L+K+ LR+ R PE+GDKF+SRHGQKGV+
Sbjct: 836  LKERRDASVAVRRGEKGIVDRVIITESPEGNKLVKVRLRELRIPELGDKFASRHGQKGVV 895

Query: 1239 GLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGT 1298
            G+++ QEDMPF E GI PDII+NPH  PSRMTVG+L+E +AGK G   G   + T F G 
Sbjct: 896  GMLLRQEDMPFTEDGIVPDIIVNPHALPSRMTVGQLLESIAGKVGAATGQLVDATPFEGV 955

Query: 1299 KLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGP 1358
               D+++ L++ G+ + GK++ YSGITGE L A I+ G VYYQKL HMV DKIHAR+RGP
Sbjct: 956  GEEDLRKLLLKLGFRWDGKEVMYSGITGEKLVADIFIGIVYYQKLHHMVADKIHARARGP 1015

Query: 1359 RVVLTRQPTGRR 1370
              +LTRQPT  R
Sbjct: 1016 VQILTRQPTEGR 1027



 Score =  100 bits (250), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 84/151 (55%), Gaps = 8/151 (5%)

Query: 192 MRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKV 251
           +R D IT  +  A+ TGNW        + GV+Q+L R +Y+S L  + R+ S   +T+  
Sbjct: 406 VRPDIITERVRQALATGNWV-----GGKTGVSQILDRTNYLSTLSYLRRVVSSLSRTQPH 460

Query: 252 SGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAM 311
              R L  +QWG LC  +TPEG+  GLVKNLAL+  ITT  DE+ + +++YN+G   +  
Sbjct: 461 FEARDLHPTQWGRLCAVETPEGQNVGLVKNLALLAEITTGVDEREVEQLLYNLGTVPVLK 520

Query: 312 FNGEELSSPGVYLVFVNGILAGITCHHKEVC 342
              + +    VYL   NG L GI  + +E+ 
Sbjct: 521 AREDGIRGAEVYL---NGRLIGIHPNAEELV 548



 Score = 92.4 bits (228), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/135 (35%), Positives = 74/135 (54%), Gaps = 15/135 (11%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKR 751
           +DD +  G +EYLD +E  ++HIAV   G   G T H+EI P  +LG  A I        
Sbjct: 611 WDDLVKMGVVEYLDADEEENAHIAVDPRGDLSGYT-HVEIIPSAILGAIASI-------- 661

Query: 752 FHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTI 811
                 +PY  HNQ+PRN Y+ AM KQ++G    N   ++D+  + L Y +RP+V ++ +
Sbjct: 662 ------IPYLEHNQSPRNQYEAAMAKQSLGLPQSNFLYKLDSRGHMLYYPERPIVTTRGL 715

Query: 812 RITNFHKLPAGKCQI 826
            +  + K PAG+  +
Sbjct: 716 ELVGYSKRPAGQNAV 730



 Score = 43.9 bits (102), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 34/67 (50%)

Query: 340 EVCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIML 399
           EV  P I+ES        P E RLR+ TY+AP+ +        +  V     IG +PIM+
Sbjct: 78  EVGWPRIKESDGSESLIYPMEARLRNATYAAPLYLTATLYVDDEPYVTETFYIGELPIMV 137

Query: 400 QSSKCVL 406
           +S +C L
Sbjct: 138 KSKRCNL 144



 Score = 43.1 bits (100), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 1/62 (1%)

Query: 472 NMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSE 531
            +R K KA+ L  +++ +V         DD+D+ GNKR+ L G L++ +F  VFK+F  E
Sbjct: 327 EIRLK-KALMLGQIVKGLVELQLGRRKPDDKDHVGNKRVRLVGDLMTQLFRTVFKQFLQE 385

Query: 532 LK 533
           L+
Sbjct: 386 LR 387


>gi|88976120|gb|ABD59034.1| RNA polymerase II second largest subunit, partial [Clitocybe
            candicans]
          Length = 563

 Score =  216 bits (549), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 210  IIPFPDHNQSPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKF 269

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 270  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEF 329

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P+ +   R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 330  EKPVRDNTLRMKHGTYDKLEDDGLIAPGTGVAGEDIIIGKTAPIPPDSEELGQRTRTHTR 389

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ +R TR P+ GDKF+SRHGQKG IG+  
Sbjct: 390  RDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRSTRIPQTGDKFASRHGQKGTIGITY 449

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 450  RQEDMPFTAEGIVPDIIINPHAI 472



 Score =  174 bits (442), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 82/174 (47%), Positives = 112/174 (64%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++NSE    +K+ +R TR P+ GDKF+SRHGQKG IG+  
Sbjct: 390  RDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRSTRIPQTGDKFASRHGQKGTIGITY 449

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 450  RQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVES 509

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSR 1356
            V   L + GY  +G ++ Y G TG  L+A +Y GP YYQ+LKHMV DKIH+R+R
Sbjct: 510  VSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMVDDKIHSRAR 563



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/109 (41%), Positives = 62/109 (56%), Gaps = 14/109 (12%)

Query: 718 ESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGK 777
           ++GI     TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGK
Sbjct: 185 KAGINSHTWTHCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGK 230

Query: 778 QAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
           QAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 231 QAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAI 279


>gi|300394710|gb|ADK11893.1| DNA-directed RNA polymerase II subunit two, partial [Jaapia
            argillacea]
          Length = 352

 Score =  216 bits (549), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 164/263 (62%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 18   IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLRF 77

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 78   RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDIEKKSGVQQLEMF 137

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS-AISMATPEY-- 1090
              P  +   R     +  L+ DG++APG  +    +++ K+ P    S  +   T  +  
Sbjct: 138  EKPTRDTTLRMKHGTYDKLEDDGLIAPGTGVNGEDIIIGKTAPIPPDSEELGQRTRSHTR 197

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V  + K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 198  RDVSTALKSTESGIVDQVLITTNSEGQKFVKVRVRATRIPQIGDKFASRHGQKGTIGITY 257

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDI++NPH +
Sbjct: 258  RQEDMPFTAEGITPDIVINPHAI 280



 Score =  144 bits (363), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 68/155 (43%), Positives = 97/155 (62%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V  + K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 198  RDVSTALKSTESGIVDQVLITTNSEGQKFVKVRVRATRIPQIGDKFASRHGQKGTIGITY 257

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDI++NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 258  RQEDMPFTAEGITPDIVINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVES 317

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGP 1337
            V   L + GY  +G ++ Y G TG  L+A +Y GP
Sbjct: 318  VSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGP 352



 Score = 88.6 bits (218), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/100 (45%), Positives = 59/100 (59%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           THLEI P  +LGVCA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 2   THLEIHPSMILGVCASI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYLTN 47

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 48  FLVRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNAI 87


>gi|113957146|gb|ABI49102.1| RNA polymerase II second largest subunit [Flavocetraria nivalis]
          Length = 699

 Score =  216 bits (549), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 107/264 (40%), Positives = 166/264 (62%), Gaps = 5/264 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DT+   L Y Q+P+  ++++    F
Sbjct: 361  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYQQRMDTMANILYYPQKPLATTRSVEFLKF 420

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR      K+      ++ 
Sbjct: 421  TELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQEKRVGMSVVEQF 480

Query: 1034 LGPLLEADTRKPVY-RHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAISMATPEY- 1090
              P + +DT K  +  +  LD+DG+VAPG ++    +++ K+ P       +   T  + 
Sbjct: 481  EKP-MRSDTLKLKHGTYDKLDEDGLVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKLHV 539

Query: 1091 -KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             ++V    + +    +++VL+S+N+E    +K+ +R T+ P+IGDKF+SRHGQKG IG+ 
Sbjct: 540  KRDVSTPLRSTENGIVDQVLLSTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGIT 599

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
              QEDMPF   G+ PD+I+NPH +
Sbjct: 600  YRQEDMPFTSEGMVPDLIINPHAI 623



 Score =  144 bits (363), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 80/228 (35%), Positives = 123/228 (53%), Gaps = 13/228 (5%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESG-ICPDIIMNPHGL 1173
            ++ Q  +P   D    +HG      + G++  G+ V  ED+   ++  I PD       L
Sbjct: 476  VVEQFEKPMRSDTLKLKHGTYDKLDEDGLVAPGVRVSGEDIIIGKTAPIAPDA----EEL 531

Query: 1174 KGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
                ++   ++V    + +    +++VL+S+N+E    +K+ +R T+ P+IGDKF+SRHG
Sbjct: 532  GQRTKLHVKRDVSTPLRSTENGIVDQVLLSTNAEGLRFVKVRMRTTKIPQIGDKFASRHG 591

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGT 1293
            QKG IG+   QEDMPF   G+ PD+I+NPH  PSRMT+  LIE L  K   + G   + T
Sbjct: 592  QKGTIGITYRQEDMPFTSEGMVPDLIINPHAIPSRMTIAHLIECLLSKVSSLRGFEGDAT 651

Query: 1294 AFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQ 1341
             F    +  V   L  HGY  +G ++ Y+G TG  L   ++ GP YYQ
Sbjct: 652  PFTEVTVDSVSRLLREHGYQSRGLEVMYNGHTGRKLVTQVFLGPTYYQ 699



 Score =  111 bits (278), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 91/151 (60%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++   +TN L  ++ TGNW   ++    + GV+QVL+R ++ S L  + R N+
Sbjct: 37  EFNMTLAVKSTHLTNGLRYSLATGNWGDQKKAASVKAGVSQVLNRYTFASTLSHLRRTNT 96

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT     + ++  M  
Sbjct: 97  PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIVDFMIQ 156

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
             +E +  +  E L+SP    +FVNG+  G+
Sbjct: 157 RNMEVLEEY--EPLNSPNATKIFVNGVWVGV 185



 Score = 92.4 bits (228), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/100 (44%), Positives = 59/100 (59%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 345 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 390

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
            Q R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 391 YQQRMDTMANILYYPQKPLATTRSVEFLKFTELPAGQNAI 430


>gi|55273999|gb|AAV48870.1| RNA polymerase II second largest subunit [Climacodon septentrionalis]
          Length = 886

 Score =  216 bits (549), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 164/263 (62%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 519  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKF 578

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 579  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEF 638

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS-AISMATPEY-- 1090
              P  E   R     +  ++ DG++APG  +    +++ K+ P    S  +   T ++  
Sbjct: 639  GKPTRETTLRMKHGTYDKIEDDGLIAPGTGVNGEDIIIGKTAPIPPDSEKLGQRTRQHTR 698

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++N+E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 699  RDVSTPLKSTESGIIDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 758

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 759  RQEDMPFTAEGITPDIIINPHAI 781



 Score =  193 bits (490), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 90/188 (47%), Positives = 123/188 (65%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++N+E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 699  RDVSTPLKSTESGIIDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 758

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 759  RQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVES 818

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
            V + L + GY  +G ++ Y G TG  L+A +Y GP YYQ+LKHMV DKIH+R+RGP  +L
Sbjct: 819  VSQFLRKEGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMVDDKIHSRARGPVQIL 878

Query: 1363 TRQPTGRR 1370
            TRQP   R
Sbjct: 879  TRQPVEGR 886



 Score =  109 bits (272), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 94/151 (62%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++ +TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 219 EFNLSLAVKHNTITNGLKYSLATGNWGDQKKMMSAKAGVSQVLNRYTYASTLSHLRRCNT 278

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNL+LM+ I+  +    +++ +  
Sbjct: 279 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSCISVGSLSAPVIEFLEE 338

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E  ++      ++P    VFVNG+  G+
Sbjct: 339 WGLE--SLEENAHSATPCTK-VFVNGVWMGV 366



 Score = 88.2 bits (217), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/166 (34%), Positives = 78/166 (46%), Gaps = 42/166 (25%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGI---RPGVT------------------ 726
           G+K +DD +  G IE LD  E     I ++   +   R G+                   
Sbjct: 438 GYK-WDDLIKGGVIELLDAEEEETVMICMTPEDLELARNGIDPLQQDAADIDMSVRLKTA 496

Query: 727 ------THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAM 780
                 TH EI P  +LGVCA I              +P+P HNQ+PRNTYQ AMGKQAM
Sbjct: 497 QTAHKFTHCEIHPSMILGVCASI--------------IPFPDHNQSPRNTYQSAMGKQAM 542

Query: 781 GCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
           G    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 543 GIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAI 588



 Score = 57.0 bits (136), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 57/114 (50%), Gaps = 14/114 (12%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A++ L    + HI +       KA +    I R++LA  +   LDDRD++G KRL+LAG 
Sbjct: 130 AQEILQKEMLPHISMAEGSESKKAYFFGYRIHRLLLAALERRDLDDRDHFGKKRLDLAGP 189

Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYGN 555
           LL+ +F  +F++   ++           KE NLS  V    + +G  + L  GN
Sbjct: 190 LLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLSLAVKHNTITNGLKYSLATGN 243


>gi|52699845|gb|AAU86984.1| DNA-dependent RNA polymerase II second largest subunit [Penicillium
            freii]
          Length = 705

 Score =  216 bits (549), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 108/266 (40%), Positives = 164/266 (61%), Gaps = 9/266 (3%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQA      N   R++T+   L Y Q+P+  ++++    F
Sbjct: 361  IIPFPDHNQSPRNTYQSAMGKQAXXXXXXNFSQRMETMANILYYPQKPLATTRSMEFLRF 420

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+ +YSGY+ ED++IMN++S+DRG  R L YR      K    Q  +R 
Sbjct: 421  RELPAGQNAIVAIATYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYADTEKMVGLQVVERF 480

Query: 1034 LGPLLEADT---RKPVYRHRALDQDGIVAPGEQICERQVLVNKSMP-TISVSAISMATPE 1089
              P +  DT   RK  Y    LD+DGIVAPG ++    +++ K+ P       +   T  
Sbjct: 481  EKP-MRIDTLGMRKGTY--DKLDEDGIVAPGVRVSGEDIIIGKTAPLAADAEELGQRTKA 537

Query: 1090 YKEVPVS--YKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
            + ++ VS   + +    +++VL+S+ ++D   +K+ +R T+ P+IGDKF+SRHGQKG IG
Sbjct: 538  HTKIDVSTPLRSTENGIVDQVLISTGNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIG 597

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            +   QEDMPF   G+ PD+I+NPH +
Sbjct: 598  ITYRQEDMPFTREGVVPDLIINPHAI 623



 Score =  148 bits (374), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 66/151 (43%), Positives = 97/151 (64%)

Query: 1197 LEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICP 1256
            +++VL+S+ ++D   +K+ +R T+ P+IGDKF+SRHGQKG IG+   QEDMPF   G+ P
Sbjct: 555  VDQVLISTGNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRQEDMPFTREGVVP 614

Query: 1257 DIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQG 1316
            D+I+NPH  PSRMT+  LIE    K   + G   + T F    +  V   L  HGY  +G
Sbjct: 615  DLIINPHAIPSRMTIAHLIECQLSKVSALRGFEGDATPFTDVTVDSVSRLLREHGYQSRG 674

Query: 1317 KDIFYSGITGEALEAYIYSGPVYYQKLKHMV 1347
             ++ ++G TG  + A ++ GP YYQ+L+HMV
Sbjct: 675  FEVMFNGHTGRKMVAQVFLGPTYYQRLRHMV 705



 Score =  111 bits (278), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 56/144 (38%), Positives = 85/144 (59%), Gaps = 3/144 (2%)

Query: 192 MRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRK 250
           ++  T+T  L  A+ TGNW   ++    + GV+QVLSR ++ S L  + R N+   +  K
Sbjct: 44  IKASTLTGGLKYALATGNWGEQKKAATTKAGVSQVLSRYTFASSLSHLRRTNTPIGRDGK 103

Query: 251 VSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIA 310
           ++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT     + ++  M    +E + 
Sbjct: 104 IAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPAEPIVDFMIQRNMEVLE 163

Query: 311 MFNGEELSSPGVYLVFVNGILAGI 334
            F  E   +P    VFVNG+  GI
Sbjct: 164 EF--EPQVTPNATKVFVNGVWVGI 185



 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/100 (41%), Positives = 56/100 (56%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LGVCA I              +P+P HNQ+PRNTYQ AMGKQA      N
Sbjct: 345 THCEIHPSMILGVCASI--------------IPFPDHNQSPRNTYQSAMGKQAXXXXXXN 390

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R++T+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 391 FSQRMETMANILYYPQKPLATTRSMEFLRFRELPAGQNAI 430


>gi|317155939|ref|XP_001825469.2| DNA-directed RNA polymerase II subunit RPB2 [Aspergillus oryzae
            RIB40]
          Length = 1221

 Score =  216 bits (549), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 107/266 (40%), Positives = 167/266 (62%), Gaps = 9/266 (3%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R++T+   L Y Q+P+  ++++    F
Sbjct: 750  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSMEFLRF 809

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED+++MN++S+DRG  R L YR      K       +R 
Sbjct: 810  RELPAGQNAIVAIACYSGYNQEDSVVMNQSSIDRGLFRSLFYRTYTDSEKMVGLTVVERF 869

Query: 1034 LGPLLEADT---RKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAISMATPE 1089
              P+ + DT   RK  Y    LD+DGI+APG ++    +++ K+ P       +   T  
Sbjct: 870  EKPMRQ-DTIGMRKGTYDK--LDEDGIIAPGVRVSGEDIIIGKTAPLAPDAEELGQRTKA 926

Query: 1090 YKEVPVS--YKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
            + ++ VS   + +    +++VLVS++++D   +K+ +R T+ P+IGDKF+SRHGQKG IG
Sbjct: 927  HTKLDVSTPLRSTESGIVDQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIG 986

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            +   QEDMPF+  G+ PD+++NPH +
Sbjct: 987  ITYRQEDMPFSREGVAPDLVINPHAI 1012



 Score =  182 bits (463), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 84/189 (44%), Positives = 121/189 (64%)

Query: 1184 EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVE 1243
            +V    + +    +++VLVS++++D   +K+ +R T+ P+IGDKF+SRHGQKG IG+   
Sbjct: 931  DVSTPLRSTESGIVDQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYR 990

Query: 1244 QEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDV 1303
            QEDMPF+  G+ PD+++NPH  PSRMT+  LIE    K   + G   + T F    +  V
Sbjct: 991  QEDMPFSREGVAPDLVINPHAIPSRMTIAHLIECQLSKVSALRGFEGDATPFTDVTVDSV 1050

Query: 1304 QEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLT 1363
               L  HGY  +G ++ Y+G TG  L A ++ GP YYQ+L+HMV DKIHAR+RGP  +LT
Sbjct: 1051 SRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHARARGPTQILT 1110

Query: 1364 RQPTGRRWK 1372
            RQP   R +
Sbjct: 1111 RQPVEGRAR 1119



 Score =  112 bits (281), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 56/144 (38%), Positives = 85/144 (59%), Gaps = 3/144 (2%)

Query: 192 MRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRK 250
           ++  T+T  L  A+ TGNW   ++    + GV+QVLSR +Y S L  + R N+   +  K
Sbjct: 434 IKASTLTGGLKYALATGNWGEQKKAASAKAGVSQVLSRYTYASTLSHLRRTNTPIGRDGK 493

Query: 251 VSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIA 310
           ++ PR L  + WG++CP++TPEG+ACGLVKNLALM ++T     + ++  M    +E + 
Sbjct: 494 IAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYVTVGTPSEPIIDFMIQRNMEVLE 553

Query: 311 MFNGEELSSPGVYLVFVNGILAGI 334
            F  E   +P    VFVNG+  GI
Sbjct: 554 EF--EPQVTPNATKVFVNGVWVGI 575



 Score = 88.6 bits (218), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LGVCA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 734 THCEIHPSMILGVCASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 779

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R++T+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 780 FDQRMETMANILYYPQKPLATTRSMEFLRFRELPAGQNAI 819



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 56/115 (48%), Gaps = 16/115 (13%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMV-LALSDPDMLDDRDYYGNKRLELAG 514
           AR+ +    + HI         KA +L  M+ R++  AL   D +DDRD++G KRL+LAG
Sbjct: 338 AREIMQKELLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRD-VDDRDHFGKKRLDLAG 396

Query: 515 SLLSLMFEDVFKRFNSELK-------ETNLSGVVN-------LVSGWWFELKYGN 555
            LL+ +F  +F R   +L+       ETN    +N       L  G  + L  GN
Sbjct: 397 PLLANLFRVLFTRVTRDLQRYVQRCVETNREIYLNIGIKASTLTGGLKYALATGN 451



 Score = 43.1 bits (100), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 18/89 (20%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDI--EYTRGSQRVV------------ 386
           + +P + E    T    P E RLR+LTY++P+ + I      G +R V            
Sbjct: 79  LSRPSVTEGDGATTIMLPQEARLRNLTYASPLYLGITKRIMEGRERSVADRDDEEIEEDE 138

Query: 387 ----RSDLVIGRMPIMLQSSKCVLRNKTE 411
               +  + IG++PIML+S  C+L++ +E
Sbjct: 139 DRKAQETVFIGKVPIMLKSKYCILKDLSE 167


>gi|300394748|gb|ADK11912.1| DNA-directed RNA polymerase II subunit two, partial [Ramariopsis
            kunzei]
          Length = 678

 Score =  216 bits (549), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 107/263 (40%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 347  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKF 406

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 407  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEF 466

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 467  EKPTRDNTLRMKHGTYDKLEDDGLIAPGTGVAGEDIIIGKTAPIPPDSEELGQRTRTHTR 526

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 527  RDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITY 586

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 587  RQEDMPFTAEGIVPDIIINPHAI 609



 Score =  138 bits (348), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 68/157 (43%), Positives = 95/157 (60%)

Query: 1178 RITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV 1237
            R    ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG 
Sbjct: 522  RTHTRRDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGT 581

Query: 1238 IGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGG 1297
            IG+   QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F  
Sbjct: 582  IGITYRQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTE 641

Query: 1298 TKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIY 1334
              +  V   L + GY  +G ++ Y G TG  L+A +Y
Sbjct: 642  LTVESVSTFLKQKGYLSRGLEVMYHGHTGRKLQALVY 678



 Score = 96.7 bits (239), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/152 (35%), Positives = 87/152 (57%), Gaps = 6/152 (3%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGN-WTIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGN    ++    + GV+QVL+R +Y S L  + R N+
Sbjct: 40  EFNLALAVKHQTITNGLKYSLATGNRGDQKKSTASKAGVSQVLNRYTYASTLSHLRRCNT 99

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  +  G +CP++TPEG+ACGLVKNLALM  I+  +    +++ +  
Sbjct: 100 PLGREGKIAKPRQLHNTHRGTVCPAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEE 159

Query: 304 IGIEHIAMFNGEELSSP-GVYLVFVNGILAGI 334
            G+E +     E   SP     VFVNG+  G+
Sbjct: 160 WGLESLE----ENAHSPIPCTKVFVNGVWMGV 187



 Score = 90.5 bits (223), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 48/121 (39%), Positives = 66/121 (54%), Gaps = 14/121 (11%)

Query: 706 VNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQ 765
            N+G     A  ++GI     TH EI P  +LG+CA I              +P+P HNQ
Sbjct: 310 ANDGEFDPAARLKAGINAHTWTHCEIHPSMILGICASI--------------IPFPDHNQ 355

Query: 766 APRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQ 825
           +PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  
Sbjct: 356 SPRNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNA 415

Query: 826 I 826
           I
Sbjct: 416 I 416


>gi|103001625|gb|ABF71515.1| DNA-dependent RNA polymerase II second largest subunit [Acarospora
            sp. Hertel 39.701]
          Length = 691

 Score =  216 bits (549), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 107/264 (40%), Positives = 167/264 (63%), Gaps = 5/264 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N + R+DT+   L Y Q+P+  ++++    F
Sbjct: 352  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYEQRMDTMANILYYPQKPLATTRSMEFLKF 411

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR+     K+      ++ 
Sbjct: 412  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSVVEQF 471

Query: 1034 LGPLLEADTRKPVY-RHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAISMATPEY- 1090
              P + +DT K  +  +  LD DGIVAPG ++    +++ K+ P       +   T  + 
Sbjct: 472  EKP-MRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKLHI 530

Query: 1091 -KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             ++V    + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHGQKG IG+ 
Sbjct: 531  KRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGIT 590

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
              QEDMPF + GI PD+I+NPH +
Sbjct: 591  YRQEDMPFTKEGIVPDLIINPHAI 614



 Score =  144 bits (362), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 80/229 (34%), Positives = 125/229 (54%), Gaps = 13/229 (5%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESG-ICPDIIMNPHGL 1173
            ++ Q  +P   D    +HG        G++  G+ V  ED+   ++  I PD       L
Sbjct: 467  VVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDA----EEL 522

Query: 1174 KGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
                ++   ++V    + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHG
Sbjct: 523  GQRTKLHIKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHG 582

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGT 1293
            QKG IG+   QEDMPF + GI PD+I+NPH  PSRMT+  LIE    K   + G   + T
Sbjct: 583  QKGTIGITYRQEDMPFTKEGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDAT 642

Query: 1294 AFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQK 1342
             F    +  V + L  HGY  +G ++ Y+G TG  L A ++ GP YYQ+
Sbjct: 643  PFTEITVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQR 691



 Score =  113 bits (282), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 90/151 (59%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW   ++    + GV+QVL+R ++ S L  + R N+
Sbjct: 15  EFNLTLGVKSTTITNGLKYSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNT 74

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM +I+     + ++  M  
Sbjct: 75  PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYISVGTPSEPIIDFMVQ 134

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
             +E +  +  E   SP    VFVNG+  G+
Sbjct: 135 RNMEVLEEY--EPQRSPNATKVFVNGVWVGV 163



 Score = 90.9 bits (224), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 59/100 (59%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 336 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 381

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
            + R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 382 YEQRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 421


>gi|103001423|gb|ABF71507.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
            gobiense]
          Length = 693

 Score =  216 bits (549), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 107/264 (40%), Positives = 166/264 (62%), Gaps = 5/264 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 354  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDQRMDTMANILYYPQKPLATTRSMEFLKF 413

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR+     K+      ++ 
Sbjct: 414  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSVVEQF 473

Query: 1034 LGPLLEADTRKPVY-RHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAISMATPEY- 1090
              P + +DT K  +  +  LD DGIVAPG ++    +++ K+ P       +   T  + 
Sbjct: 474  EKP-MRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKLHV 532

Query: 1091 -KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             ++V    + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHGQKG IG+ 
Sbjct: 533  KRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGIT 592

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
              QEDMPF + GI PD+I+NPH +
Sbjct: 593  YRQEDMPFTKEGIVPDLIINPHAI 616



 Score =  145 bits (366), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 80/229 (34%), Positives = 125/229 (54%), Gaps = 13/229 (5%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESG-ICPDIIMNPHGL 1173
            ++ Q  +P   D    +HG        G++  G+ V  ED+   ++  I PD       L
Sbjct: 469  VVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPD----AEEL 524

Query: 1174 KGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
                ++   ++V    + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHG
Sbjct: 525  GQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHG 584

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGT 1293
            QKG IG+   QEDMPF + GI PD+I+NPH  PSRMT+  LIE    K   + G   + T
Sbjct: 585  QKGTIGITYRQEDMPFTKEGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDAT 644

Query: 1294 AFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQK 1342
             F    +  V + L  HGY  +G ++ Y+G TG  L A ++ GP YYQ+
Sbjct: 645  PFTEVTVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQR 693



 Score =  114 bits (286), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 91/151 (60%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW   ++    + GV+QVL+R ++ S L  + R N+
Sbjct: 31  EFNLTLGVKSTTITNGLKYSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNT 90

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT     + +++ M  
Sbjct: 91  PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIEFMIQ 150

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
             +E +  +  E   SP    VFVNG+  G+
Sbjct: 151 RNMEVLEEY--EPQRSPNATKVFVNGVWVGV 179



 Score = 90.1 bits (222), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 338 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 383

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 384 YDQRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 423


>gi|6606107|gb|AAF19066.1|AF107794_1 DNA-dependent RNA polymerase II RPB140 [Byssochlamys nivea]
          Length = 905

 Score =  216 bits (549), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 108/266 (40%), Positives = 166/266 (62%), Gaps = 9/266 (3%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R++T+   L Y Q+P+  ++++    F
Sbjct: 563  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSMEFLKF 622

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR      K       +R 
Sbjct: 623  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMVGLTVVERF 682

Query: 1034 LGPLLEADT---RKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAISMATPE 1089
              P + +DT   RK  Y    +D+DGI+APG ++    +++ K+ P       +   T  
Sbjct: 683  EKP-MRSDTIGMRKGTY--DKIDEDGIIAPGVRVSGEDIIIGKTAPLAPEAEELGQRTKA 739

Query: 1090 YKEVPVS--YKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
            + ++ VS   + +    +++VLVS++++D   +K+ +R T+ P++GDKF+SRHGQKG IG
Sbjct: 740  HTKLDVSTPLRSTENGIVDQVLVSTSNDDLKFVKVRMRTTKIPQVGDKFASRHGQKGTIG 799

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            +   QEDMPF   GI PD+I+NPH +
Sbjct: 800  ITYRQEDMPFTREGIVPDLIINPHAI 825



 Score =  147 bits (372), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 67/149 (44%), Positives = 96/149 (64%)

Query: 1197 LEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICP 1256
            +++VLVS++++D   +K+ +R T+ P++GDKF+SRHGQKG IG+   QEDMPF   GI P
Sbjct: 757  VDQVLVSTSNDDLKFVKVRMRTTKIPQVGDKFASRHGQKGTIGITYRQEDMPFTREGIVP 816

Query: 1257 DIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQG 1316
            D+I+NPH  PSRMT+  LIE    K   + G   + T F    +  V   L  HGY  +G
Sbjct: 817  DLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTDVTVDSVSRLLREHGYQSRG 876

Query: 1317 KDIFYSGITGEALEAYIYSGPVYYQKLKH 1345
             ++ Y+G TG  L A ++ GP YYQ+L+H
Sbjct: 877  FEVMYNGHTGRKLVAQVFLGPTYYQRLRH 905



 Score =  112 bits (281), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 57/144 (39%), Positives = 85/144 (59%), Gaps = 3/144 (2%)

Query: 192 MRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRK 250
           ++  T+T  L  A+ TGNW   ++    + GV+QVLSR +Y S L  + R N+   +  K
Sbjct: 246 VKASTLTGGLKYALATGNWGEQKKAASSKAGVSQVLSRYTYSSTLSHLRRTNTPIGRDGK 305

Query: 251 VSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIA 310
           ++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT     + ++  M    +E + 
Sbjct: 306 IAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLE 365

Query: 311 MFNGEELSSPGVYLVFVNGILAGI 334
            F  E   +P    VFVNG+  GI
Sbjct: 366 EF--EPQVTPNATKVFVNGVWVGI 387



 Score = 90.1 bits (222), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 48/121 (39%), Positives = 67/121 (55%), Gaps = 15/121 (12%)

Query: 707 NEGNDSHIAV-SESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQ 765
           +EGND +  V S    +    TH EI P  +LG+CA I              +P+P HNQ
Sbjct: 526 DEGNDPNKRVRSVLSQKAHTWTHCEIHPSMILGICASI--------------IPFPDHNQ 571

Query: 766 APRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQ 825
           +PRNTYQ AMGKQAMG    N   R++T+   L Y Q+P+  ++++    F +LPAG+  
Sbjct: 572 SPRNTYQSAMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSMEFLKFRELPAGQNA 631

Query: 826 I 826
           I
Sbjct: 632 I 632



 Score = 53.9 bits (128), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 56/115 (48%), Gaps = 16/115 (13%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMV-LALSDPDMLDDRDYYGNKRLELAG 514
           AR+ +    + HI         KA +L  M+ R++  AL   D +DDRD++G KRL+LAG
Sbjct: 150 AREIMQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRD-VDDRDHFGKKRLDLAG 208

Query: 515 SLLSLMFEDVFKRFNSELK-------ETNLSGVVN-------LVSGWWFELKYGN 555
            LL+ +F  +F R   +L+       ETN    +N       L  G  + L  GN
Sbjct: 209 PLLATLFRTLFTRVTRDLQRYVQRCVETNREIYLNIGVKASTLTGGLKYALATGN 263


>gi|40643905|emb|CAD89691.1| RNA polymerase II, second largest subunit [Escallonia sp. Oxelman
            2340]
          Length = 508

 Score =  216 bits (549), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 111/270 (41%), Positives = 167/270 (61%), Gaps = 19/270 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 139  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNFQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 198

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L +R+ +           ++ 
Sbjct: 199  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSVDRGFFRSLFFRSYR---------DEEKK 249

Query: 1034 LGPLLEADTRKPV------YRHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            +G L++ D  +P        RH +   LD DG+  PG ++    V++ K+ P     A  
Sbjct: 250  MGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDDAQG 309

Query: 1085 MATPEYK-EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1143
             A+   K +   S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQK
Sbjct: 310  QASRYSKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQK 369

Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G +G+   QEDMP+   GI PDII+NPH +
Sbjct: 370  GTVGMTYTQEDMPWTAEGITPDIIVNPHAI 399



 Score =  161 bits (408), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 76/166 (45%), Positives = 107/166 (64%)

Query: 1187 VSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQED 1246
             S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   QED
Sbjct: 321  TSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 380

Query: 1247 MPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEE 1306
            MP+   GI PDII+NPH  PSRMT+G+LIE + GK     G   + T F    + ++ + 
Sbjct: 381  MPWTAEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 440

Query: 1307 LIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIH 1352
            L + GY  +G +  Y+G TG  L A I+ GP YYQ+LKHMV DKIH
Sbjct: 441  LHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIH 486



 Score = 99.8 bits (247), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/172 (36%), Positives = 85/172 (49%), Gaps = 40/172 (23%)

Query: 677 RPTFLNMHQFLGFKRFD----------------DFLYEGKIEYLDVNEGNDSHIAVSESG 720
           RP F+   Q L  K+ D                D + +G IEY+D  E   + I+++ + 
Sbjct: 47  RPLFIVNKQRLLIKKADIQALQQRETPEDGGWHDLVAKGYIEYIDTEEEETTMISMTIND 106

Query: 721 IRPG----------VTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNT 770
           +               TH EI P  +LGVCA I              +P+P HNQ+PRNT
Sbjct: 107 LVSARLNPEEAYSETYTHCEIHPSLILGVCASI--------------IPFPDHNQSPRNT 152

Query: 771 YQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAG 822
           YQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F +LPAG
Sbjct: 153 YQSAMGKQAMGIYVTNFQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG 204


>gi|357216631|gb|AET71049.1| RNA polymerase II second largest subunit, partial [Trametes
            sanguinea]
          Length = 658

 Score =  216 bits (549), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 345  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLRF 404

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 405  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEF 464

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 465  EKPTRDTTLRMKHGTYDKLEDDGLIAPGTNVNGEDIIIGKTAPIPPDSEELGQRTRTHTK 524

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++N+E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 525  RDVSTPLKSTESGIVDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 584

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 585  RQEDMPFTAEGITPDIIINPHAI 607



 Score =  126 bits (316), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 59/134 (44%), Positives = 84/134 (62%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++N+E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 525  RDVSTPLKSTESGIVDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 584

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 585  RQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVES 644

Query: 1303 VQEELIRHGYNYQG 1316
            V + L + GY  +G
Sbjct: 645  VSQFLRQKGYQSRG 658



 Score =  110 bits (276), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 94/151 (62%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++ +TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 40  EFNLSLAVKHNTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT 99

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNL+LM+ I+  +    +++ +  
Sbjct: 100 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSCISVGSLSAPVIEFLEE 159

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E  ++      S+P    VFVNG+  G+
Sbjct: 160 WGLE--SLEENAHSSTPCTK-VFVNGVWMGV 187



 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/220 (30%), Positives = 100/220 (45%), Gaps = 50/220 (22%)

Query: 691 RFDDFLYEGKIEYLDVNEGNDSHIAVS----------ESGIRPGVTT------------- 727
           ++D+ + +G IE LD  E     I ++           +GI P   T             
Sbjct: 265 KWDNLIKDGVIELLDAEEEETVMICMTPEDLENSRLQAAGIDPHADTEFDPSARLKAPTN 324

Query: 728 -----HLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGC 782
                H EI P  +LGVCA I              +P+P HNQ+PRNTYQ AMGKQAMG 
Sbjct: 325 AHTWTHCEIHPSMILGVCASI--------------IPFPDHNQSPRNTYQSAMGKQAMGI 370

Query: 783 IGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQISPGGAEELTARESCHE 842
              N   R+DT+   L Y Q+P+  ++++    F +LPAG+  I    A    +  +  +
Sbjct: 371 YLTNFLVRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNAIV---AILCYSGYNQED 427

Query: 843 VLKIISFSISVAVFDSVWLG-----DVKQGVHQLSEEKEP 877
            + +   SI   +F S++       + K GV QL E ++P
Sbjct: 428 SVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKP 467


>gi|300394716|gb|ADK11896.1| DNA-directed RNA polymerase II subunit two, partial [Leptosporomyces
            raunkiaeri]
          Length = 669

 Score =  216 bits (549), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 333  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKF 392

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + ++   Q  +  
Sbjct: 393  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLERKSGVQQLEEF 452

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  E   R     +  ++ DG++APG  +    +++ K+ P    S        T   
Sbjct: 453  EKPTRENTLRMKHGTYDKIEDDGLIAPGTNVSGEDIIIGKTAPIPPDSEELGQRTRTHTR 512

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 513  RDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRATRIPQIGDKFASRHGQKGTIGITY 572

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 573  RQEDMPFTAEGIVPDIIINPHAI 595



 Score =  143 bits (361), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 68/155 (43%), Positives = 96/155 (61%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 513  RDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRATRIPQIGDKFASRHGQKGTIGITY 572

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 573  RQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVES 632

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGP 1337
            V   L + GY  +G ++ Y G +G  L+A +Y GP
Sbjct: 633  VSTFLRQKGYQSRGLEVMYHGHSGRKLQAQVYLGP 667



 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/177 (33%), Positives = 89/177 (50%), Gaps = 22/177 (12%)

Query: 706 VNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQ 765
           +N+G     A  ++G      TH EI P  +LG+CA I              +P+P HNQ
Sbjct: 296 MNDGEFDPAARLKAGTDAHTWTHCEIHPSMILGICASI--------------IPFPDHNQ 341

Query: 766 APRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQ 825
           +PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  
Sbjct: 342 SPRNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNA 401

Query: 826 ISPGGAEELTARESCHEVLKIISFSISVAVFDSVWLG-----DVKQGVHQLSEEKEP 877
           I    A    +  +  + + +   SI   +F S++       + K GV QL E ++P
Sbjct: 402 IV---AILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLERKSGVQQLEEFEKP 455



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 76/154 (49%), Gaps = 10/154 (6%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLG----MMTR 240
           +F++   ++  TITN L   + TGN   +R    ++    V  R S ++ +     ++ R
Sbjct: 26  EFNLSLAVKHQTITNGLKYPLATGNGGDQRSPCLQK---LVYLRCSSVTRMRRHYLILRR 82

Query: 241 INSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKI 300
            N    +  ++  PR       G   P++TPEG+ACGLV NLALM  I+  +    +++ 
Sbjct: 83  CNRHLGERARLQNPRHCTILTGGRCVPAETPEGQACGLVTNLALMACISVGSLSAPVIEF 142

Query: 301 MYNIGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
           +   G+E  ++      S+P    VFVNG+  G+
Sbjct: 143 LEEWGLE--SLEENAHSSTPCTK-VFVNGVWMGV 173


>gi|300394688|gb|ADK11882.1| DNA-directed RNA polymerase II subunit two, partial [Coniophora
            puteana]
          Length = 686

 Score =  216 bits (549), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 351  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKF 410

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 411  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEF 470

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  ++ DG++APG  +    +++ K+ P    S        T   
Sbjct: 471  EKPTRDTTLRMKHGTYDKIEDDGLIAPGTGVSGEDIIIGKTAPIPPDSEELGQRTRTHTR 530

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 531  RDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITY 590

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 591  RQEDMPFTAEGIVPDIIINPHAI 613



 Score =  140 bits (354), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 68/155 (43%), Positives = 95/155 (61%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 531  RDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITY 590

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 591  RQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVES 650

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGP 1337
            V   L + GY  +G ++ Y G TG  L+A +Y  P
Sbjct: 651  VSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLVP 685



 Score =  113 bits (283), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 58/151 (38%), Positives = 91/151 (60%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKM-ERQGVTQVLSRLSYISGLGMMTRINS 243
           +F+I   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 43  EFNISLAVKHQTITNGLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNT 102

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM+ I+  +    +++ +  
Sbjct: 103 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSFSAPVIEFLEE 162

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E +        SS     VFVNG+  G+
Sbjct: 163 WGLESL---EENAHSSAACTKVFVNGVWMGV 190



 Score = 89.7 bits (221), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 46/109 (42%), Positives = 62/109 (56%), Gaps = 14/109 (12%)

Query: 718 ESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGK 777
           +SGI     TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGK
Sbjct: 326 KSGINAHTWTHCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGK 371

Query: 778 QAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
           QAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 372 QAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAI 420


>gi|70794986|gb|AAZ08467.1| RNA polymerase II second largest subunit [Linanthus californicus]
          Length = 733

 Score =  216 bits (549), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 111/272 (40%), Positives = 167/272 (61%), Gaps = 21/272 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 259  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 318

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L +R+ +           ++ 
Sbjct: 319  RELPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR---------DEEKK 369

Query: 1034 LGPLLEADTRKPV------YRHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            +G L++ D  +P        RH +   LD DG+  PG ++    V++ K+ P     A  
Sbjct: 370  MGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAPDEATQ 429

Query: 1085 ---MATPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1141
                A    ++   S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHG
Sbjct: 430  GGPAARYTKRDHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 489

Query: 1142 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            QKG +G+   QEDMP+   GICPDII+NPH +
Sbjct: 490  QKGTVGMTYTQEDMPWTIEGICPDIIVNPHAI 521



 Score =  184 bits (466), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 87/184 (47%), Positives = 120/184 (65%)

Query: 1187 VSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQED 1246
             S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   QED
Sbjct: 443  TSLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 502

Query: 1247 MPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEE 1306
            MP+   GICPDII+NPH  PSRMT+G+LIE + GK     G   + T F    + ++ + 
Sbjct: 503  MPWTIEGICPDIIVNPHAIPSRMTIGQLIECIMGKVAAXMGKEGDATPFTDVTVDNISKA 562

Query: 1307 LIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQP 1366
            L + GY  +G +  Y+G TG  L A I+ GP YYQ+LKHMV DKIH+R RGP  +LTRQP
Sbjct: 563  LHKCGYQMRGFETMYNGHTGRRLPAXIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP 622

Query: 1367 TGRR 1370
               R
Sbjct: 623  AEGR 626



 Score =  102 bits (253), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/116 (46%), Positives = 73/116 (62%), Gaps = 8/116 (6%)

Query: 222 VTQVLSRLSYISGLGMMTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKN 281
           V+QVL+RL+Y S L  + R+NS   +  K++ PR L  SQWGM+CP++TPEG+ACGLVKN
Sbjct: 11  VSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKN 70

Query: 282 LALMTHITTENDEKNMLKIMYNIGIEHIAMFNGEELSS---PGVYLVFVNGILAGI 334
           LALM +IT  +    +L+ +   G E     N EE+S    P    +FVNG   GI
Sbjct: 71  LALMVYITVGSAAYPILEFLEEWGTE-----NFEEISPAVIPQATKIFVNGCWVGI 121



 Score =  100 bits (248), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 62/172 (36%), Positives = 86/172 (50%), Gaps = 40/172 (23%)

Query: 677 RPTFLNMHQFLGFKRFD----------------DFLYEGKIEYLDVNEGNDSHIAVSESG 720
           RP F+  +Q L  K+ D                D + +G IEY+D  E   + I+++ + 
Sbjct: 167 RPLFIVENQRLLIKKRDIQALQQRESPEDGGWHDLVSKGYIEYIDTEEEETTMISMTIND 226

Query: 721 IRPG----------VTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNT 770
           +               TH EI P  +LGVCA I              +P+P HNQ+PRNT
Sbjct: 227 LVSARANKKEAYSDTYTHCEIHPSLILGVCASI--------------IPFPDHNQSPRNT 272

Query: 771 YQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAG 822
           YQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F +LPAG
Sbjct: 273 YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRELPAG 324


>gi|55274001|gb|AAV48871.1| RNA polymerase II second largest subunit [Clitocybe subditopoda]
          Length = 693

 Score =  216 bits (549), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 330  IIPFPDHNQSPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKF 389

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 390  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEF 449

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P+ +   R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 450  EKPVRDNTLRMKHGTYDKLEDDGLIAPGTGVAGEDIIIGKTAPIPPDSEELGQRTRTHTR 509

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ +R TR P+ GDKF+SRHGQKG IG+  
Sbjct: 510  RDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRSTRIPQTGDKFASRHGQKGTIGITY 569

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 570  RQEDMPFTAEGIVPDIIINPHAI 592



 Score =  189 bits (481), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 89/184 (48%), Positives = 120/184 (65%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++NSE    +K+ +R TR P+ GDKF+SRHGQKG IG+  
Sbjct: 510  RDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRSTRIPQTGDKFASRHGQKGTIGITY 569

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 570  RQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVES 629

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
            V   L + GY  +G ++ Y G TG  L+A +Y GP YYQ+LKHMV DKIH+R+RGP  +L
Sbjct: 630  VSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMVDDKIHSRARGPVQIL 689

Query: 1363 TRQP 1366
            TRQP
Sbjct: 690  TRQP 693



 Score =  110 bits (276), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 92/151 (60%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 25  EFNLALAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT 84

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM  I+  +    +++ +  
Sbjct: 85  PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEE 144

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E  ++      ++P    VFVNG+  G+
Sbjct: 145 WGLE--SLEENAHSTTPCTK-VFVNGVWMGV 172



 Score = 87.4 bits (215), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 56/166 (33%), Positives = 86/166 (51%), Gaps = 26/166 (15%)

Query: 721 IRPGVT----THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMG 776
           ++PG+     TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMG
Sbjct: 304 LKPGLNSHTWTHCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMG 349

Query: 777 KQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQISPGGAEELTA 836
           KQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  I    A    +
Sbjct: 350 KQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIV---AILCYS 406

Query: 837 RESCHEVLKIISFSISVAVFDSVWLG-----DVKQGVHQLSEEKEP 877
             +  + + +   SI   +F S++       + K G+ QL E ++P
Sbjct: 407 GYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEFEKP 452


>gi|238498864|ref|XP_002380667.1| DNA-dependent RNA polymerase II RPB140 [Aspergillus flavus NRRL3357]
 gi|83774211|dbj|BAE64336.1| unnamed protein product [Aspergillus oryzae RIB40]
 gi|220693941|gb|EED50286.1| DNA-dependent RNA polymerase II RPB140 [Aspergillus flavus NRRL3357]
 gi|391868073|gb|EIT77296.1| RNA polymerase II, second largest subunit [Aspergillus oryzae 3.042]
          Length = 1254

 Score =  216 bits (549), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 107/266 (40%), Positives = 167/266 (62%), Gaps = 9/266 (3%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R++T+   L Y Q+P+  ++++    F
Sbjct: 783  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSMEFLRF 842

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED+++MN++S+DRG  R L YR      K       +R 
Sbjct: 843  RELPAGQNAIVAIACYSGYNQEDSVVMNQSSIDRGLFRSLFYRTYTDSEKMVGLTVVERF 902

Query: 1034 LGPLLEADT---RKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAISMATPE 1089
              P+ + DT   RK  Y    LD+DGI+APG ++    +++ K+ P       +   T  
Sbjct: 903  EKPMRQ-DTIGMRKGTYDK--LDEDGIIAPGVRVSGEDIIIGKTAPLAPDAEELGQRTKA 959

Query: 1090 YKEVPVS--YKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
            + ++ VS   + +    +++VLVS++++D   +K+ +R T+ P+IGDKF+SRHGQKG IG
Sbjct: 960  HTKLDVSTPLRSTESGIVDQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIG 1019

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            +   QEDMPF+  G+ PD+++NPH +
Sbjct: 1020 ITYRQEDMPFSREGVAPDLVINPHAI 1045



 Score =  182 bits (462), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 84/189 (44%), Positives = 121/189 (64%)

Query: 1184 EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVE 1243
            +V    + +    +++VLVS++++D   +K+ +R T+ P+IGDKF+SRHGQKG IG+   
Sbjct: 964  DVSTPLRSTESGIVDQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYR 1023

Query: 1244 QEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDV 1303
            QEDMPF+  G+ PD+++NPH  PSRMT+  LIE    K   + G   + T F    +  V
Sbjct: 1024 QEDMPFSREGVAPDLVINPHAIPSRMTIAHLIECQLSKVSALRGFEGDATPFTDVTVDSV 1083

Query: 1304 QEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLT 1363
               L  HGY  +G ++ Y+G TG  L A ++ GP YYQ+L+HMV DKIHAR+RGP  +LT
Sbjct: 1084 SRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHARARGPTQILT 1143

Query: 1364 RQPTGRRWK 1372
            RQP   R +
Sbjct: 1144 RQPVEGRAR 1152



 Score =  112 bits (281), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 56/144 (38%), Positives = 85/144 (59%), Gaps = 3/144 (2%)

Query: 192 MRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRK 250
           ++  T+T  L  A+ TGNW   ++    + GV+QVLSR +Y S L  + R N+   +  K
Sbjct: 467 IKASTLTGGLKYALATGNWGEQKKAASAKAGVSQVLSRYTYASTLSHLRRTNTPIGRDGK 526

Query: 251 VSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIA 310
           ++ PR L  + WG++CP++TPEG+ACGLVKNLALM ++T     + ++  M    +E + 
Sbjct: 527 IAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYVTVGTPSEPIIDFMIQRNMEVLE 586

Query: 311 MFNGEELSSPGVYLVFVNGILAGI 334
            F  E   +P    VFVNG+  GI
Sbjct: 587 EF--EPQVTPNATKVFVNGVWVGI 608



 Score = 88.6 bits (218), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LGVCA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 767 THCEIHPSMILGVCASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 812

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R++T+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 813 FDQRMETMANILYYPQKPLATTRSMEFLRFRELPAGQNAI 852



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 56/115 (48%), Gaps = 16/115 (13%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMV-LALSDPDMLDDRDYYGNKRLELAG 514
           AR+ +    + HI         KA +L  M+ R++  AL   D +DDRD++G KRL+LAG
Sbjct: 371 AREIMQKELLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRD-VDDRDHFGKKRLDLAG 429

Query: 515 SLLSLMFEDVFKRFNSELK-------ETNLSGVVN-------LVSGWWFELKYGN 555
            LL+ +F  +F R   +L+       ETN    +N       L  G  + L  GN
Sbjct: 430 PLLANLFRVLFTRVTRDLQRYVQRCVETNREIYLNIGIKASTLTGGLKYALATGN 484


>gi|300394750|gb|ADK11913.1| DNA-directed RNA polymerase II subunit two, partial [Serpula
            himantioides]
          Length = 685

 Score =  216 bits (549), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 350  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKF 409

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 410  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEF 469

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 470  EKPTRDNTLRMKHGTYDKLEDDGLIAPGTGVSGEDIIIGKTAPIPPDSEELGQRTRTHTR 529

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 530  RDVSTPLKSTENGIVDQVLITTNSEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 589

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDI++NPH +
Sbjct: 590  RQEDMPFTAEGIVPDIVINPHAI 612



 Score =  144 bits (362), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 68/156 (43%), Positives = 96/156 (61%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 530  RDVSTPLKSTENGIVDQVLITTNSEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 589

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDI++NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 590  RQEDMPFTAEGIVPDIVINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVES 649

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPV 1338
            V   L + GY  +G ++ Y G TG  L+A +Y GP 
Sbjct: 650  VSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPT 685



 Score =  111 bits (278), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 93/151 (61%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 43  EFNLSLAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT 102

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM+ I+  +    +++ +  
Sbjct: 103 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSYSAPVIEFLEE 162

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E  ++      S+P    VFVNG+  G+
Sbjct: 163 WGLE--SLEENAHSSTPCTK-VFVNGVWMGV 190



 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/177 (33%), Positives = 89/177 (50%), Gaps = 22/177 (12%)

Query: 706 VNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQ 765
            N+G+    A  ++G      TH EI P  +LGVCA I              +P+P HNQ
Sbjct: 313 TNDGDYDPAARLKAGNNSHTWTHCEIHPSMILGVCASI--------------IPFPDHNQ 358

Query: 766 APRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQ 825
           +PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  
Sbjct: 359 SPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNA 418

Query: 826 ISPGGAEELTARESCHEVLKIISFSISVAVFDSVWLG-----DVKQGVHQLSEEKEP 877
           I    A    +  +  + + +   SI   +F S++       + K GV QL E ++P
Sbjct: 419 IV---AILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKP 472


>gi|103001706|gb|ABF71518.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
            gobiense]
          Length = 695

 Score =  216 bits (549), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 107/264 (40%), Positives = 166/264 (62%), Gaps = 5/264 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 356  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDQRMDTMANILYYPQKPLATTRSMEFLKF 415

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR+     K+      ++ 
Sbjct: 416  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSVVEQF 475

Query: 1034 LGPLLEADTRKPVY-RHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAISMATPEY- 1090
              P + +DT K  +  +  LD DGIVAPG ++    +++ K+ P       +   T  + 
Sbjct: 476  EKP-MRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKLHV 534

Query: 1091 -KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             ++V    + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHGQKG IG+ 
Sbjct: 535  KRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGIT 594

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
              QEDMPF + GI PD+I+NPH +
Sbjct: 595  YRQEDMPFTKEGIVPDLIINPHAI 618



 Score =  145 bits (366), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 80/229 (34%), Positives = 125/229 (54%), Gaps = 13/229 (5%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESG-ICPDIIMNPHGL 1173
            ++ Q  +P   D    +HG        G++  G+ V  ED+   ++  I PD       L
Sbjct: 471  VVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPD----AEEL 526

Query: 1174 KGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
                ++   ++V    + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHG
Sbjct: 527  GQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHG 586

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGT 1293
            QKG IG+   QEDMPF + GI PD+I+NPH  PSRMT+  LIE    K   + G   + T
Sbjct: 587  QKGTIGITYRQEDMPFTKEGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDAT 646

Query: 1294 AFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQK 1342
             F    +  V + L  HGY  +G ++ Y+G TG  L A ++ GP YYQ+
Sbjct: 647  PFTEVTVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQR 695



 Score =  114 bits (286), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 91/151 (60%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW   ++    + GV+QVL+R ++ S L  + R N+
Sbjct: 33  EFNLTLGVKSTTITNGLKYSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNT 92

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT     + +++ M  
Sbjct: 93  PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIEFMIQ 152

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
             +E +  +  E   SP    VFVNG+  G+
Sbjct: 153 RNMEVLEEY--EPQRSPNATKVFVNGVWVGV 181



 Score = 90.1 bits (222), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 340 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 385

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 386 YDQRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 425


>gi|103001538|gb|ABF71512.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
            chlorophanum]
          Length = 692

 Score =  216 bits (549), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 107/264 (40%), Positives = 166/264 (62%), Gaps = 5/264 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 353  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDQRMDTMANILYYPQKPLATTRSMEFLKF 412

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR+     K+      ++ 
Sbjct: 413  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSVVEQF 472

Query: 1034 LGPLLEADTRKPVY-RHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAISMATPEY- 1090
              P + +DT K  +  +  LD DGIVAPG ++    +++ K+ P       +   T  + 
Sbjct: 473  EKP-MRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKLHV 531

Query: 1091 -KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             ++V    + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHGQKG IG+ 
Sbjct: 532  KRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGIT 591

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
              QEDMPF + GI PD+I+NPH +
Sbjct: 592  YRQEDMPFTKEGIVPDLIINPHAI 615



 Score =  145 bits (366), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 80/229 (34%), Positives = 125/229 (54%), Gaps = 13/229 (5%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESG-ICPDIIMNPHGL 1173
            ++ Q  +P   D    +HG        G++  G+ V  ED+   ++  I PD       L
Sbjct: 468  VVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPD----AEEL 523

Query: 1174 KGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
                ++   ++V    + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHG
Sbjct: 524  GQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHG 583

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGT 1293
            QKG IG+   QEDMPF + GI PD+I+NPH  PSRMT+  LIE    K   + G   + T
Sbjct: 584  QKGTIGITYRQEDMPFTKEGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDAT 643

Query: 1294 AFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQK 1342
             F    +  V + L  HGY  +G ++ Y+G TG  L A ++ GP YYQ+
Sbjct: 644  PFTEVTVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQR 692



 Score =  114 bits (286), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 91/151 (60%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW   ++    + GV+QVL+R ++ S L  + R N+
Sbjct: 30  EFNLTLGVKSTTITNGLKYSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNT 89

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT     + +++ M  
Sbjct: 90  PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIEFMIQ 149

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
             +E +  +  E   SP    VFVNG+  G+
Sbjct: 150 RNMEVLEEY--EPQRSPNATKVFVNGVWVGV 178



 Score = 90.1 bits (222), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 337 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 382

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 383 YDQRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 422


>gi|103001447|gb|ABF71508.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
            gobiense]
          Length = 692

 Score =  216 bits (549), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 107/264 (40%), Positives = 166/264 (62%), Gaps = 5/264 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 353  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDQRMDTMANILYYPQKPLATTRSMEFLKF 412

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR+     K+      ++ 
Sbjct: 413  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSVVEQF 472

Query: 1034 LGPLLEADTRKPVY-RHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAISMATPEY- 1090
              P + +DT K  +  +  LD DGIVAPG ++    +++ K+ P       +   T  + 
Sbjct: 473  EKP-MRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKLHV 531

Query: 1091 -KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             ++V    + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHGQKG IG+ 
Sbjct: 532  KRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGIT 591

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
              QEDMPF + GI PD+I+NPH +
Sbjct: 592  YRQEDMPFTKEGIVPDLIINPHAI 615



 Score =  145 bits (366), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 80/229 (34%), Positives = 125/229 (54%), Gaps = 13/229 (5%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESG-ICPDIIMNPHGL 1173
            ++ Q  +P   D    +HG        G++  G+ V  ED+   ++  I PD       L
Sbjct: 468  VVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPD----AEEL 523

Query: 1174 KGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
                ++   ++V    + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHG
Sbjct: 524  GQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHG 583

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGT 1293
            QKG IG+   QEDMPF + GI PD+I+NPH  PSRMT+  LIE    K   + G   + T
Sbjct: 584  QKGTIGITYRQEDMPFTKEGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDAT 643

Query: 1294 AFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQK 1342
             F    +  V + L  HGY  +G ++ Y+G TG  L A ++ GP YYQ+
Sbjct: 644  PFTEVTVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQR 692



 Score =  114 bits (286), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 91/151 (60%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW   ++    + GV+QVL+R ++ S L  + R N+
Sbjct: 30  EFNLTLGVKSTTITNGLKYSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNT 89

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT     + +++ M  
Sbjct: 90  PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIEFMIQ 149

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
             +E +  +  E   SP    VFVNG+  G+
Sbjct: 150 RNMEVLEEY--EPQRSPNATKVFVNGVWVGV 178



 Score = 90.1 bits (222), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 337 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 382

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 383 YDQRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 422


>gi|56694374|gb|AAW22927.1| RNA polymerase II second largest subunit [Dianthus sp. UWG]
          Length = 540

 Score =  216 bits (549), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 111/270 (41%), Positives = 167/270 (61%), Gaps = 19/270 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 202  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 261

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L +R+ +           ++ 
Sbjct: 262  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR---------DEEKK 312

Query: 1034 LGPLLEADTRKPV------YRHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            +G L++ D  +P        RH +   LD DG+  PG ++    V++ K+ P     A  
Sbjct: 313  MGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPLSPEEAQG 372

Query: 1085 MATP-EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1143
             A     K+  +S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQK
Sbjct: 373  PAARYSRKDHSISLRHSESGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQK 432

Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G +G+   QEDMP+   GI PDII+NPH +
Sbjct: 433  GTVGMTYTQEDMPWTVEGITPDIIVNPHAI 462



 Score =  145 bits (367), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 80/223 (35%), Positives = 122/223 (54%), Gaps = 13/223 (5%)

Query: 1129 RPEIGDKFSSRHGQKGVI--------GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRIT 1180
            RP+  +    RHG    +        G  V  ED+   ++       ++P   +G     
Sbjct: 323  RPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKT-----TPLSPEEAQGPAARY 377

Query: 1181 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1240
              K+  +S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+
Sbjct: 378  SRKDHSISLRHSESGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGM 437

Query: 1241 IVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKL 1300
               QEDMP+   GI PDII+NPH  PSRMT+G+LIE + GK     G   + T F    +
Sbjct: 438  TYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHVGKEGDATPFTDVTV 497

Query: 1301 VDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKL 1343
             ++ + L + GY  +G +  Y+G TG  L A I+ GP YYQ+L
Sbjct: 498  DNISKALQKCGYQMRGFETMYNGHTGRKLSAMIFLGPTYYQRL 540



 Score =  102 bits (255), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/172 (37%), Positives = 87/172 (50%), Gaps = 40/172 (23%)

Query: 677 RPTFLNMHQFLGFKRFD----------------DFLYEGKIEYLDVNEGNDSHIAVS--- 717
           RP F+   Q L  K+ D                D + +G IEY+D  E   + I+++   
Sbjct: 110 RPLFIVEKQRLLIKKKDIRALQQRETPEDGGWHDLVAKGFIEYIDTEEEETTMISMTIND 169

Query: 718 --ESGIRP-----GVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNT 770
              + + P     G  TH EI P  +LGVCA I              +P+P HNQ+PRNT
Sbjct: 170 LVSARLNPEESYSGTYTHCEIHPSLILGVCASI--------------IPFPDHNQSPRNT 215

Query: 771 YQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAG 822
           YQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F +LPAG
Sbjct: 216 YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG 267



 Score = 49.3 bits (116), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 40/69 (57%), Gaps = 8/69 (11%)

Query: 269 DTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMFNGEELSS---PGVYLV 325
           +TPEG+ACGLVKNLALM +IT  +    +L+ +     E  +  N EE+S    P    +
Sbjct: 1   ETPEGQACGLVKNLALMVYITVGSAAYPILEFL-----EEWSTENFEEISPAVIPQATKI 55

Query: 326 FVNGILAGI 334
           FVNG   GI
Sbjct: 56  FVNGGWVGI 64


>gi|68300804|gb|AAY89344.1| RNA polymerase II second largest subunit [Petunia x hybrida]
          Length = 1203

 Score =  216 bits (549), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 113/271 (41%), Positives = 167/271 (61%), Gaps = 21/271 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 731  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 790

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L +R+ +           ++ 
Sbjct: 791  RQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR---------DEEKK 841

Query: 1034 LGPLLEADTRKPV------YRHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            +G L++ D  +P        RH +   LD DG   PG ++    V++ K+ P IS     
Sbjct: 842  MGTLVKEDFGRPDRENTMGMRHGSYDKLDDDGFAPPGTRVSGDDVIIGKTTP-ISQDDAQ 900

Query: 1085 MATPEY--KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQ 1142
              +  Y  K+   S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQ
Sbjct: 901  GQSARYTRKDHSTSLRHSETGIVDQVLLTTNADGLRFVKIRMRSVRIPQIGDKFSSRHGQ 960

Query: 1143 KGVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            KG IG+   QEDMP+   GI PDII+NPH +
Sbjct: 961  KGTIGMTYTQEDMPWTMEGITPDIIVNPHAI 991



 Score =  181 bits (459), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 87/188 (46%), Positives = 121/188 (64%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            K+   S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG IG+  
Sbjct: 909  KDHSTSLRHSETGIVDQVLLTTNADGLRFVKIRMRSVRIPQIGDKFSSRHGQKGTIGMTY 968

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMP+   GI PDII+NPH  PSRMT+G+L+E + GK     G   + T F    + +
Sbjct: 969  TQEDMPWTMEGITPDIIVNPHAIPSRMTIGQLVECVMGKVAAHMGKEGDATPFTDVTVDN 1028

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
            + + L + GY  +G +  Y+G TG  L A I+ GP YYQ+LKHMV DKIH+R RGP  +L
Sbjct: 1029 ISKALHKCGYQMRGFERMYNGHTGRILTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQIL 1088

Query: 1363 TRQPTGRR 1370
            TRQP   R
Sbjct: 1089 TRQPAEGR 1096



 Score =  114 bits (286), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 61/146 (41%), Positives = 87/146 (59%), Gaps = 8/146 (5%)

Query: 192 MRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKV 251
           ++  TIT+ L  ++ TGNW        R GV+QVL+RL++ S L  + R+NS   +  K+
Sbjct: 453 IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTFASTLSHLRRLNSPIGREGKL 512

Query: 252 SGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAM 311
           + PR L  S WGM+CP++TPEG+ACGLVKNLALM +IT  +    +L+ +     E  + 
Sbjct: 513 AKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFL-----EEWST 567

Query: 312 FNGEELSS---PGVYLVFVNGILAGI 334
            N EE+S    P    +FVNG   GI
Sbjct: 568 ENFEEISPAVIPQSTKIFVNGCWVGI 593



 Score =  102 bits (253), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/141 (41%), Positives = 77/141 (54%), Gaps = 24/141 (17%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIA-----VSESGIRPG-----VTTHLEIAPFTLLGVCA 741
           + D   +G IEY+D  E   + IA     ++ S + P        TH EI P  +LGVCA
Sbjct: 670 WHDLXAKGFIEYVDTEEEETTMIAMTINDLTNSRLNPSEAYSETYTHCEIHPSLILGVCA 729

Query: 742 GIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYA 801
            I              +P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y 
Sbjct: 730 SI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYP 775

Query: 802 QRPMVESKTIRITNFHKLPAG 822
           Q+P+V ++ +   +F +LPAG
Sbjct: 776 QKPLVTTRAMEHLHFRQLPAG 796



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 54/114 (47%), Gaps = 14/114 (12%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A++ L    + H+         KA Y   +I R++L +      DDRD+YGNKRL+LAG 
Sbjct: 357 AKEILQREMLPHVGTREYCETKKAYYFGYIIHRLLLCVLGRRPEDDRDHYGNKRLDLAGP 416

Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYGN 555
           LL  +F  +F++   ++           K+ NL   +    + SG  + L  GN
Sbjct: 417 LLGGLFRMLFRKLTRDVRSYVQKCVDSGKDVNLQFAIKAKTITSGLKYSLATGN 470



 Score = 48.9 bits (115), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 9/80 (11%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDI---------EYTRGSQRVVRSDLV 391
           + +P + ES   T    P   RLR+LTYS+P+ VD+         +Y   S+    + + 
Sbjct: 108 LSRPMMTESDGETNTLFPKAARLRNLTYSSPLYVDVRKEVIKKGHDYEEVSECQEFTKVF 167

Query: 392 IGRMPIMLQSSKCVLRNKTE 411
           IG++PIML+SS C L N +E
Sbjct: 168 IGKVPIMLRSSYCSLYNLSE 187



 Score = 43.1 bits (100), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 13/71 (18%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFI------------NVEIKKLMQANANIYSD-VDP 160
           D W ++ ++ +EKGLV+  +DSFD FI            ++EI+   Q N    SD VD 
Sbjct: 38  DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDETADIEIRPESQHNPARQSDFVDT 97

Query: 161 LFYLKYLDIHV 171
           ++ +K+  I++
Sbjct: 98  IYKIKFTQIYL 108


>gi|393244464|gb|EJD51976.1| DNA-dependent RNA polymerase II second largest subunit [Auricularia
            delicata TFB-10046 SS5]
          Length = 1217

 Score =  216 bits (549), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 105/263 (39%), Positives = 160/263 (60%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R DT+   L Y Q+P+  ++++    F
Sbjct: 747  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFQVRQDTMANILYYPQKPLATTRSMEYLKF 806

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   V K+      +  
Sbjct: 807  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDVEKKSGMVALEEF 866

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  L+ DG++APG  +    +++ K+ P    S        T + 
Sbjct: 867  EKPTRDTTLRMKHGTYDKLEDDGLIAPGTGVAGEDIIIGKTAPLPQDSEELGQRTRTHQK 926

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++N +    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 927  RDVSTPLKSTENGIVDQVLITTNQDGQKFVKIRIRSTRVPQIGDKFASRHGQKGTIGITY 986

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   G+ PDII+NPH +
Sbjct: 987  RQEDMPFTAEGVTPDIIINPHAI 1009



 Score =  193 bits (490), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 90/193 (46%), Positives = 125/193 (64%)

Query: 1178 RITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV 1237
            R  + ++V    K +    +++VL+++N +    +K+ +R TR P+IGDKF+SRHGQKG 
Sbjct: 922  RTHQKRDVSTPLKSTENGIVDQVLITTNQDGQKFVKIRIRSTRVPQIGDKFASRHGQKGT 981

Query: 1238 IGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGG 1297
            IG+   QEDMPF   G+ PDII+NPH  PSRMT+G L+E L  K   M GN  + T F  
Sbjct: 982  IGITYRQEDMPFTAEGVTPDIIINPHAIPSRMTIGHLVECLLSKVATMIGNEGDATPFTD 1041

Query: 1298 TKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRG 1357
              +  V + L + GY+ +G ++ Y G TG  L+A +Y GP YYQ+LKHMV DKIH+R+RG
Sbjct: 1042 LTVESVSQVLRQRGYHSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMVDDKIHSRARG 1101

Query: 1358 PRVVLTRQPTGRR 1370
            P  +LTRQP   R
Sbjct: 1102 PVQILTRQPVEGR 1114



 Score =  111 bits (278), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 58/153 (37%), Positives = 94/153 (61%), Gaps = 8/153 (5%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++ +TITN L  ++ TGNW  ++  M  + GV+QVL+R ++ S L  + R N+
Sbjct: 441 EFNLSLAVKANTITNGLKYSLATGNWGDQKKSMSAKAGVSQVLNRYTFASTLSHLRRTNT 500

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM  I+  +    +++ +  
Sbjct: 501 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMACISVGSLSAPVIEFLEE 560

Query: 304 IGIEHIAMFNGEELSSPGV--YLVFVNGILAGI 334
            G+E +     EE +  GV    VFVNG+  G+
Sbjct: 561 WGLESL-----EENAHSGVPSTKVFVNGVWMGV 588



 Score = 87.8 bits (216), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 44/100 (44%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 731 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYLTN 776

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
            Q R DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 777 FQVRQDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAI 816



 Score = 61.2 bits (147), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 59/114 (51%), Gaps = 14/114 (12%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A++ L    + HI +       KA +L  MI R++LA  +   LDDRD++G KRL+LAG 
Sbjct: 352 AQEILQKEMLPHISMAEGSESKKAYFLGYMIHRLLLAALERRELDDRDHFGKKRLDLAGP 411

Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYGN 555
           LL+ +F  +F++   ++           KE NLS  V    + +G  + L  GN
Sbjct: 412 LLASLFRMLFRKLTKDVYRYLQKCVEARKEFNLSLAVKANTITNGLKYSLATGN 465



 Score = 46.2 bits (108), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 18/89 (20%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQR---------------- 384
           + +P I E+        P E RLR+LTYSAP+ V++  +R + R                
Sbjct: 96  LSRPTITEADGSVTPVFPQEARLRNLTYSAPLYVEMRRSRLTGRESMTKPGDYDWQRDPN 155

Query: 385 --VVRSDLVIGRMPIMLQSSKCVLRNKTE 411
                  + IG++PIML+SS C+L+  ++
Sbjct: 156 ESTTMQKIWIGKVPIMLRSSFCILKTLSD 184



 Score = 43.9 bits (102), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 28/41 (68%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANI 154
           D W ++ SF +EKGLV+  +DSFD F+   +++L+  NA +
Sbjct: 28  DCWTIISSFFEEKGLVRQQLDSFDEFVQNTMQELVDENAEL 68


>gi|300394756|gb|ADK11916.1| DNA-directed RNA polymerase II subunit two, partial [Serpula
            himantioides]
          Length = 682

 Score =  216 bits (549), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 350  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKF 409

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 410  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEF 469

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 470  EKPTRDNTLRMKHGTYDKLEDDGLIAPGTGVSGEDIIIGKTAPIPPDSEELGQRTRTHTR 529

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 530  RDVSTPLKSTENGIVDQVLITTNSEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 589

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDI++NPH +
Sbjct: 590  RQEDMPFTAEGIVPDIVINPHAI 612



 Score =  139 bits (351), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 66/152 (43%), Positives = 94/152 (61%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 530  RDVSTPLKSTENGIVDQVLITTNSEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 589

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDI++NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 590  RQEDMPFTAEGIVPDIVINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVES 649

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIY 1334
            V   L + GY  +G ++ Y G TG  L+A +Y
Sbjct: 650  VSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVY 681



 Score =  111 bits (277), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 93/151 (61%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 43  EFNLSLAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT 102

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM+ I+  +    +++ +  
Sbjct: 103 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSYSAPVIEFLEE 162

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E  ++      S+P    VFVNG+  G+
Sbjct: 163 WGLE--SLEENAHSSTPCTK-VFVNGVWMGV 190



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/177 (33%), Positives = 89/177 (50%), Gaps = 22/177 (12%)

Query: 706 VNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQ 765
            N+G+    A  ++G      TH EI P  +LGVCA I              +P+P HNQ
Sbjct: 313 TNDGDYDPAARLKAGNNSHTWTHCEIHPSMILGVCASI--------------IPFPDHNQ 358

Query: 766 APRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQ 825
           +PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  
Sbjct: 359 SPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNA 418

Query: 826 ISPGGAEELTARESCHEVLKIISFSISVAVFDSVWLG-----DVKQGVHQLSEEKEP 877
           I    A    +  +  + + +   SI   +F S++       + K GV QL E ++P
Sbjct: 419 IV---AILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKP 472


>gi|300394712|gb|ADK11894.1| DNA-directed RNA polymerase II subunit two, partial [Leucogyrophana
            lichenicola]
          Length = 664

 Score =  216 bits (549), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 330  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKF 389

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 390  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEF 449

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  ++ DG++APG  +    +++ K+ P    S        T   
Sbjct: 450  EKPTRDTTLRMKHGTYDKIEDDGLIAPGTGVSGEDIIIGKTAPIPPDSEELGQRTRTHTR 509

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 510  RDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITY 569

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 570  RQEDMPFTAEGIVPDIIINPHAI 592



 Score =  144 bits (363), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 69/155 (44%), Positives = 96/155 (61%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 510  RDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITY 569

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 570  RQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVES 629

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGP 1337
            V   L + GY  +G ++ Y G TG  L+A +Y GP
Sbjct: 630  VSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGP 664



 Score =  111 bits (277), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 93/151 (61%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKM-ERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 24  EFNLSLAVKHQTITNGLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNT 83

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM+ I+  +    +++ +  
Sbjct: 84  PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSYSAPVIEFLEE 143

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E  ++      S+P    VFVNG+  G+
Sbjct: 144 WGLE--SLEENAHSSTPCTK-VFVNGVWMGV 171



 Score = 92.0 bits (227), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/177 (34%), Positives = 90/177 (50%), Gaps = 22/177 (12%)

Query: 706 VNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQ 765
            N+G+    A  ++GI     TH EI P  +LGVCA I              +P+P HNQ
Sbjct: 293 ANDGDYDPAARLKAGINTHTWTHCEIHPSMILGVCASI--------------IPFPDHNQ 338

Query: 766 APRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQ 825
           +PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  
Sbjct: 339 SPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNA 398

Query: 826 ISPGGAEELTARESCHEVLKIISFSISVAVFDSVWLG-----DVKQGVHQLSEEKEP 877
           I    A    +  +  + + +   SI   +F S++       + K GV QL E ++P
Sbjct: 399 IV---AILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKP 452


>gi|110669610|gb|ABG81900.1| RNA polymerase II second largest subunit [Hypocenomyce scalaris]
          Length = 708

 Score =  215 bits (548), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 104/263 (39%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N + R+DT+   L Y Q+P+  ++++    F
Sbjct: 360  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYEQRMDTMANILYYPQKPLATTRSMEFLKF 419

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR      K+      ++ 
Sbjct: 420  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQEKRIGMSVVEQF 479

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAISMATPEY-- 1090
              P+     R     +  LD DGIVAPG ++    +++ K+ P       +   T  +  
Sbjct: 480  EKPMRSDTLRLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKLHVK 539

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHGQKG IG+  
Sbjct: 540  RDVSTPLRSTESGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGITY 599

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   G+ PD+I+NPH +
Sbjct: 600  RQEDMPFTSEGVVPDLIINPHAI 622



 Score =  159 bits (401), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 86/238 (36%), Positives = 131/238 (55%), Gaps = 13/238 (5%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESG-ICPDIIMNPHGL 1173
            ++ Q  +P   D    +HG        G++  G+ V  ED+   ++  I PD       L
Sbjct: 475  VVEQFEKPMRSDTLRLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDA----EEL 530

Query: 1174 KGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
                ++   ++V    + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHG
Sbjct: 531  GQRTKLHVKRDVSTPLRSTESGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHG 590

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGT 1293
            QKG IG+   QEDMPF   G+ PD+I+NPH  PSRMT+  LIE    K   + G   + T
Sbjct: 591  QKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDAT 650

Query: 1294 AFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKI 1351
             F    +  V   L  HGY  +G ++ Y+G TG  L A ++ GP YYQ+L+HMV DKI
Sbjct: 651  PFTEVTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKI 708



 Score =  111 bits (277), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 89/151 (58%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  T TN L  ++ TGNW   ++    + GV+QVL+R ++ S L  + R N+
Sbjct: 37  EFNLTLGVKSTTPTNGLKYSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNT 96

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT     + ++  M  
Sbjct: 97  PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQ 156

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
             +E +  +  E   SP    VFVNG+  G+
Sbjct: 157 RNMEVLEEY--EPQRSPNATKVFVNGVWVGV 185



 Score = 90.9 bits (224), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 59/100 (59%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 344 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 389

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
            + R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 390 YEQRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 429


>gi|52699796|gb|AAU86960.1| DNA-dependent RNA polymerase II second largest subunit [Cudonia
            circinans]
          Length = 718

 Score =  215 bits (548), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 103/263 (39%), Positives = 160/263 (60%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DT+   L Y Q+P+  ++++    F
Sbjct: 368  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYQQRMDTMANILYYPQKPLATTRSMEFLKF 427

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  Y+GY+ ED++IMN++S+DRG  R L YR      K+    T +  
Sbjct: 428  RELPAGQNAIVAIACYAGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQEKRVGMATIESF 487

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAISMATPEY-- 1090
              P      R     +  LD+DGIV+PG ++    +++ K+ P       +   T  +  
Sbjct: 488  EKPNRSDTIRLKTATYDKLDEDGIVSPGVRVSGEDIIIGKTAPIAPDAEELGQRTKAHTK 547

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++     + +    +++VL+++N++    +K+ +R T+ P+IGDKF+SRHGQKG +G+  
Sbjct: 548  RDASTPLRSTENGIVDQVLLTTNADGLRFVKVRMRTTKIPQIGDKFASRHGQKGTVGITY 607

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 608  RQEDMPFTREGIVPDIIINPHAI 630



 Score =  157 bits (398), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 73/157 (46%), Positives = 102/157 (64%)

Query: 1197 LEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICP 1256
            +++VL+++N++    +K+ +R T+ P+IGDKF+SRHGQKG +G+   QEDMPF   GI P
Sbjct: 562  VDQVLLTTNADGLRFVKVRMRTTKIPQIGDKFASRHGQKGTVGITYRQEDMPFTREGIVP 621

Query: 1257 DIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQG 1316
            DII+NPH  PSRMT+  LIE    K   + G   + T F    +  V + L  HGY  +G
Sbjct: 622  DIIINPHAIPSRMTIAHLIECQLSKVSTLRGLEGDATPFTEVTVDSVSKLLRDHGYQSRG 681

Query: 1317 KDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHA 1353
             +I Y+G TG  L A ++ GP YYQ+L+HMV DKI A
Sbjct: 682  FEIMYNGHTGRKLRAQVFLGPTYYQRLRHMVDDKIXA 718



 Score =  118 bits (295), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 57/157 (36%), Positives = 94/157 (59%), Gaps = 3/157 (1%)

Query: 182 KAAQFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTR 240
           K ++F++   ++  TITN L  ++ TGNW   ++      GV+QVL+R ++ S L  + R
Sbjct: 40  KQSEFNLTLAVKSSTITNGLKYSLATGNWGDQKKAASSTAGVSQVLNRYTFASTLSHLRR 99

Query: 241 INSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKI 300
            N+   +  K++ PR L  + WG++CP++TPEG+ACGLVKNL+LM ++T       +++ 
Sbjct: 100 TNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVTVGTPSDPIVEF 159

Query: 301 MYNIGIEHIAMFNGEELSSPGVYLVFVNGILAGITCH 337
           M   G++ +  +  E L SP    VFVNG+  G+  H
Sbjct: 160 MIQRGMDVLEEY--EPLRSPNSTKVFVNGVWVGVHSH 194



 Score = 93.2 bits (230), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/175 (33%), Positives = 82/175 (46%), Gaps = 47/175 (26%)

Query: 682 NMHQFLGFKRFDDFLYEGKIEYLDVNEGNDSHIAVS-------------------ESG-- 720
           N H + GF   +  L  G +EY+D  E     I ++                   +SG  
Sbjct: 280 NKHGYFGF---NGLLDSGVVEYVDAEEEETIMIVMTPEDLEISRQIQAGLEQLPDDSGDL 336

Query: 721 -------IRPG--VTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTY 771
                  + P   + TH EI P  +LG+CA I              +P+P HNQ+PRNTY
Sbjct: 337 NKRVKAPVNPTAHIWTHCEIHPSMILGICASI--------------IPFPDHNQSPRNTY 382

Query: 772 QCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
           Q AMGKQAMG    N Q R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 383 QSAMGKQAMGVFLTNYQQRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 437


>gi|300394714|gb|ADK11895.1| DNA-directed RNA polymerase II subunit two, partial [Leucogyrophana
            olivascens]
          Length = 677

 Score =  215 bits (548), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 347  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKF 406

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 407  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEF 466

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  ++ DG++APG  +    +++ K+ P    S        T   
Sbjct: 467  EKPTRDTTLRMKHGTYDKIEDDGLIAPGTGVSGEDIIIGKTAPIPPDSEELGQRTRTHTR 526

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 527  RDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITY 586

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 587  RQEDMPFTSEGIVPDIIINPHAI 609



 Score =  138 bits (348), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 66/151 (43%), Positives = 94/151 (62%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 527  RDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITY 586

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 587  RQEDMPFTSEGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVES 646

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYI 1333
            V + L + GY  +G ++ Y G TG  L+A +
Sbjct: 647  VSKFLYQKGYQSRGLEVMYHGHTGRKLQAQV 677



 Score =  112 bits (280), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 58/151 (38%), Positives = 93/151 (61%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKM-ERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 41  EFNLSLAVKHQTITNGLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNT 100

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM+ I+  +    +++ +  
Sbjct: 101 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSYSAPVIEFLEE 160

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E  ++      SSP    VFVNG+  G+
Sbjct: 161 WGLE--SLEENAHSSSPCTK-VFVNGVWMGV 188



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/121 (40%), Positives = 65/121 (53%), Gaps = 14/121 (11%)

Query: 706 VNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQ 765
            NE      A  ++GI     TH EI P  +LGVCA I              +P+P HNQ
Sbjct: 310 TNEEEYDPAARLKAGINAHTWTHCEIHPSMILGVCASI--------------IPFPDHNQ 355

Query: 766 APRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQ 825
           +PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  
Sbjct: 356 SPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNA 415

Query: 826 I 826
           I
Sbjct: 416 I 416


>gi|103001521|gb|ABF71511.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
            chlorophanum]
          Length = 692

 Score =  215 bits (548), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 107/264 (40%), Positives = 166/264 (62%), Gaps = 5/264 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 353  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDQRMDTMANILYYPQKPLATTRSMEFLKF 412

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR+     K+      ++ 
Sbjct: 413  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSVVEQF 472

Query: 1034 LGPLLEADTRKPVY-RHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAISMATPEY- 1090
              P + +DT K  +  +  LD DGIVAPG ++    +++ K+ P       +   T  + 
Sbjct: 473  EKP-MRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKLHV 531

Query: 1091 -KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             ++V    + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHGQKG IG+ 
Sbjct: 532  KRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGIT 591

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
              QEDMPF + GI PD+I+NPH +
Sbjct: 592  YRQEDMPFTKEGIVPDLIINPHAI 615



 Score =  145 bits (366), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 80/229 (34%), Positives = 125/229 (54%), Gaps = 13/229 (5%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESG-ICPDIIMNPHGL 1173
            ++ Q  +P   D    +HG        G++  G+ V  ED+   ++  I PD       L
Sbjct: 468  VVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPD----AEEL 523

Query: 1174 KGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
                ++   ++V    + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHG
Sbjct: 524  GQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHG 583

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGT 1293
            QKG IG+   QEDMPF + GI PD+I+NPH  PSRMT+  LIE    K   + G   + T
Sbjct: 584  QKGTIGITYRQEDMPFTKEGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDAT 643

Query: 1294 AFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQK 1342
             F    +  V + L  HGY  +G ++ Y+G TG  L A ++ GP YYQ+
Sbjct: 644  PFTEVTVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQR 692



 Score =  114 bits (286), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 91/151 (60%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW   ++    + GV+QVL+R ++ S L  + R N+
Sbjct: 30  EFNLTLGVKSTTITNGLKYSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNT 89

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT     + +++ M  
Sbjct: 90  PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIEFMIQ 149

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
             +E +  +  E   SP    VFVNG+  G+
Sbjct: 150 RNMEVLEEY--EPQRSPNATKVFVNGVWVGV 178



 Score = 90.1 bits (222), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 337 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 382

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 383 YDQRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 422


>gi|46277283|gb|AAS86832.1| RNA polymerase II second largest subunit, partial [Rhododendron
            macrophyllum]
          Length = 580

 Score =  215 bits (548), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 113/271 (41%), Positives = 166/271 (61%), Gaps = 21/271 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 202  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHF 261

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R + YR+ +           ++ 
Sbjct: 262  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSIFYRSYR---------DEEKK 312

Query: 1034 LGPLLEADTRKPV------YRHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            +G L++ D   P        RH +   LD DG   PG ++    V++ K+ P I+     
Sbjct: 313  MGTLVKEDFGCPNRENTMGMRHGSYDKLDDDGFAPPGTRVAGEDVIIGKTTP-IAPDDAQ 371

Query: 1085 MATPEY--KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQ 1142
              T  Y  ++     + S    +++VL+++N++    +KM +R  R P+IGDKFSSRHGQ
Sbjct: 372  GQTARYTRRDHSTCLRHSESGMVDQVLLTTNADGLRFVKMRMRSIRIPQIGDKFSSRHGQ 431

Query: 1143 KGVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            KG IG+   QEDMP+   GICPDII+NPH +
Sbjct: 432  KGTIGMAYTQEDMPWTIEGICPDIIVNPHAI 462



 Score =  182 bits (461), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 86/174 (49%), Positives = 116/174 (66%)

Query: 1197 LEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICP 1256
            +++VL+++N++    +KM +R  R P+IGDKFSSRHGQKG IG+   QEDMP+   GICP
Sbjct: 394  VDQVLLTTNADGLRFVKMRMRSIRIPQIGDKFSSRHGQKGTIGMAYTQEDMPWTIEGICP 453

Query: 1257 DIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQG 1316
            DII+NPH  PSRMT+G+LIE + GK     G   + T F    + ++ + L + GY  +G
Sbjct: 454  DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG 513

Query: 1317 KDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRR 1370
             +  Y+G TG  L   I+ GP YYQ+LKHMV DKIH+R RGP  +LTRQP   R
Sbjct: 514  FERMYNGHTGRPLTYTIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGR 567



 Score =  101 bits (251), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 66/186 (35%), Positives = 89/186 (47%), Gaps = 46/186 (24%)

Query: 663 YCDCPDGYSSGCQPRPTFLNMHQFLGFKRFD----------------DFLYEGKIEYLDV 706
           Y DC      G   RP F+   Q L  K+ D                D + +G IEY+D 
Sbjct: 102 YTDC------GRCSRPLFIVEKQKLQIKKKDILALQQRESPEEVGWHDLVAKGYIEYVDT 155

Query: 707 NEGNDSHIAVSESGIRPG----------VTTHLEIAPFTLLGVCAGIELLQYNKRFHSPG 756
            E   + I+++ + +               TH EI P  +LGVCA I             
Sbjct: 156 EEEETTMISMTINDLTSARLCPDDAYSETYTHCEIHPSLILGVCASI------------- 202

Query: 757 LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 816
            +P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 203 -IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHF 261

Query: 817 HKLPAG 822
            +LPAG
Sbjct: 262 RQLPAG 267



 Score = 50.1 bits (118), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 8/69 (11%)

Query: 269 DTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMFNGEELSSPGVYL---V 325
           +TPEG+ACGLVKNLALM +IT  +    +L+ +     E  +  N EE+S   + L   +
Sbjct: 1   ETPEGQACGLVKNLALMVYITVGSAANPILEFL-----EEWSTENFEEISPAVIPLATKI 55

Query: 326 FVNGILAGI 334
           FVNG   GI
Sbjct: 56  FVNGCWVGI 64


>gi|120561257|gb|ABM27013.1| RNA polymerase II second largest subunit, partial [Gigaspora
            gigantea]
          Length = 894

 Score =  215 bits (548), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 105/264 (39%), Positives = 163/264 (61%), Gaps = 5/264 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL   L Y Q+P+V ++ +    F
Sbjct: 551  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLANILYYPQKPLVTTRAMEFLRF 610

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+     K+    + +  
Sbjct: 611  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIFYRSYMDQEKKVGILSIEEF 670

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMA----TPE 1089
              P  E   R     +  L+ DG++APG ++    +++ K  P I    I +     +  
Sbjct: 671  DKPTRETTLRLKHGTYEKLEDDGLIAPGTRVSGDDIIIGKVTP-IPEHTIELGQRKDSHT 729

Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
            +++     + +    +++V+V++N+E    +K+ +R TR P++GDKF+SRHGQKG IG+ 
Sbjct: 730  HRDASTPMRSTENGIVDQVMVTTNAEGMKFVKVRVRSTRIPQMGDKFASRHGQKGTIGIT 789

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
              QEDMPF   GI PD+I+NPH +
Sbjct: 790  YRQEDMPFTSEGITPDLIINPHAI 813



 Score =  157 bits (396), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 69/150 (46%), Positives = 101/150 (67%)

Query: 1197 LEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICP 1256
            +++V+V++N+E    +K+ +R TR P++GDKF+SRHGQKG IG+   QEDMPF   GI P
Sbjct: 745  VDQVMVTTNAEGMKFVKVRVRSTRIPQMGDKFASRHGQKGTIGITYRQEDMPFTSEGITP 804

Query: 1257 DIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQG 1316
            D+I+NPH  PSRMT+G L+E L GK   + G   + T F    +  +   L ++GY+ +G
Sbjct: 805  DLIINPHAIPSRMTIGHLVECLLGKVSTLTGQEGDATPFTDVTVEAISHSLRQNGYHSRG 864

Query: 1317 KDIFYSGITGEALEAYIYSGPVYYQKLKHM 1346
             ++ Y+G TG  L A ++ GP YYQ+LKHM
Sbjct: 865  FEVMYNGHTGRKLAAQVFLGPTYYQRLKHM 894



 Score =  111 bits (278), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 59/156 (37%), Positives = 93/156 (59%), Gaps = 10/156 (6%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW  ++  M+ R GV+QVL+R ++ S L  + R N+
Sbjct: 229 EFNLHLAIKAQTITNGLKYSLATGNWGDQKKAMQSRAGVSQVLNRYTFASTLSHLRRCNT 288

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNL+LM++I+  +  K ++  +  
Sbjct: 289 PMGRDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSYISVGSSSKPIVDFL-- 346

Query: 304 IGIEHIAMFNGEELSSPGVYL----VFVNGILAGIT 335
              E   M N  +   P        VFVNG  AGI+
Sbjct: 347 ---EEYGMINLNQQFDPANIRDNTKVFVNGKWAGIS 379



 Score = 94.7 bits (234), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/110 (44%), Positives = 63/110 (57%), Gaps = 14/110 (12%)

Query: 717 SESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMG 776
           SES +     TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMG
Sbjct: 525 SESNLSIHTWTHCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMG 570

Query: 777 KQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
           KQAMG    N Q R+DTL   L Y Q+P+V ++ +    F +LPAG+  I
Sbjct: 571 KQAMGIYVTNYQLRMDTLANILYYPQKPLVTTRAMEFLRFRELPAGQNAI 620



 Score = 58.2 bits (139), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 45/77 (58%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A++ L    + H+       K KA +L  M+ R++LA      LDDRD+YG KR++LAG 
Sbjct: 140 AKEILQKELLPHVSTEYGCEKRKAFFLGYMVHRLLLAALGRRELDDRDHYGKKRMDLAGP 199

Query: 516 LLSLMFEDVFKRFNSEL 532
           LL+ +F  +FK+   ++
Sbjct: 200 LLASLFRMLFKKLTKDI 216


>gi|56694320|gb|AAW22900.1| RNA polymerase II second largest subunit [Microcycas calocoma]
          Length = 545

 Score =  215 bits (548), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 110/261 (42%), Positives = 161/261 (61%), Gaps = 1/261 (0%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 205  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHF 264

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L YR+ +   K+      +  
Sbjct: 265  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFYRSYRDEEKRMGTLVKEEF 324

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMP-TISVSAISMATPEYKE 1092
              P  E  T      +  LD DG+  PG ++    V++ K+ P T   S    A    ++
Sbjct: 325  GRPNRENTTGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPVTQDESGGQAARYTKRD 384

Query: 1093 VPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQ 1152
               S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   Q
Sbjct: 385  QSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYCQ 444

Query: 1153 EDMPFNESGICPDIIMNPHGL 1173
            EDMP+   GI PDII+NPH +
Sbjct: 445  EDMPWTVEGITPDIIVNPHAI 465



 Score =  148 bits (374), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 70/163 (42%), Positives = 103/163 (63%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++   S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+  
Sbjct: 383  RDQSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTY 442

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMP+   GI PDII+NPH  PSRMT+G+LIE + GK     G   + T F    + +
Sbjct: 443  CQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDN 502

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKH 1345
            + + L + GY  +G +  Y+G TG  L A I+ GP YYQ+LKH
Sbjct: 503  ISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKH 545



 Score = 99.0 bits (245), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/141 (39%), Positives = 79/141 (56%), Gaps = 24/141 (17%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGI-----RPGVT-----THLEIAPFTLLGVCA 741
           + + + +G IEY+D  E   + I+++ + +      P  T     TH EI P  +LGVCA
Sbjct: 144 WHELVTKGFIEYVDTEEEETTMISMTINDLVNARNSPTATSIVKYTHCEIHPSLILGVCA 203

Query: 742 GIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYA 801
            I              +P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y 
Sbjct: 204 SI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYP 249

Query: 802 QRPMVESKTIRITNFHKLPAG 822
           Q+P+V ++ +   +F +LPAG
Sbjct: 250 QKPLVTTRAMEHLHFRQLPAG 270


>gi|88976100|gb|ABD59031.1| RNA polymerase II second largest subunit, partial [Bolbitius
            vitellinus]
          Length = 674

 Score =  215 bits (548), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 343  IIPFPDHNQSPRNTYQSAMGKQAMGIFLTNFLVRMDTMANILYYPQKPLATTRSMEYLKF 402

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 403  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEF 462

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 463  EKPSRDTTLRMKHGTYDKLEDDGLIAPGTGVRGEDIIIGKTAPIPPDSEELGQRTRTHTR 522

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 523  RDVSTPLKSTESGIVDQVLITTNSEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 582

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PD+I+NPH +
Sbjct: 583  RQEDMPFTNEGIVPDLIINPHAI 605



 Score =  140 bits (352), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 68/157 (43%), Positives = 94/157 (59%)

Query: 1178 RITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV 1237
            R    ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG 
Sbjct: 518  RTHTRRDVSTPLKSTESGIVDQVLITTNSEGQKFVKIRVRSTRIPQIGDKFASRHGQKGT 577

Query: 1238 IGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGG 1297
            IG+   QEDMPF   GI PD+I+NPH  PSRMT+G L+E L  K   + GN  + T F  
Sbjct: 578  IGITYRQEDMPFTNEGIVPDLIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTN 637

Query: 1298 TKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIY 1334
              +  V   L   GY  +G +I Y G TG  L+A +Y
Sbjct: 638  LTVEAVSAVLRSKGYQSRGLEIMYHGHTGRKLQAQVY 674



 Score =  108 bits (270), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 56/152 (36%), Positives = 91/152 (59%), Gaps = 8/152 (5%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQ 244
           +F++   ++  TITN L  ++ TGNW  ++ K  + GV+QVL+R +Y S L  + R N+ 
Sbjct: 40  EFNLSLAVKHQTITNGLKYSLATGNWGDQK-KATKAGVSQVLNRYTYASTLSHLRRCNTP 98

Query: 245 FEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNI 304
             +  K++ PR L  + WGM+CP++TPEG+ACGLVKNL+LM  I+  +    ++  +   
Sbjct: 99  MGRDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMACISVGHQSGVVVDFLQEW 158

Query: 305 GIEHIAMFNGEELSSPGV--YLVFVNGILAGI 334
           G+E +     EE +   +    VFVNG+  G+
Sbjct: 159 GLESL-----EENAHSNIPCSKVFVNGVWVGV 185



 Score = 86.7 bits (213), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 327 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGIFLTN 372

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 373 FLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAI 412


>gi|392597726|gb|EIW87048.1| DNA-dependent RNA polymerase II second largest subunit [Coniophora
            puteana RWD-64-598 SS2]
          Length = 1228

 Score =  215 bits (548), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 756  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKF 815

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 816  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEF 875

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  ++ DG++APG  +    +++ K+ P    S        T   
Sbjct: 876  EKPTRDTTLRMKHGTYDKIEDDGLIAPGTGVSGEDIIIGKTAPIPPDSEELGQRTRTHTR 935

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 936  RDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITY 995

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 996  RQEDMPFTAEGIVPDIIINPHAI 1018



 Score =  191 bits (486), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 91/188 (48%), Positives = 122/188 (64%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 936  RDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITY 995

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 996  RQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVES 1055

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
            V   L + GY  +G ++ Y G TG  L+A +Y GP YYQ+LKHMV DKIH+R+RGP  +L
Sbjct: 1056 VSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMVDDKIHSRARGPVQIL 1115

Query: 1363 TRQPTGRR 1370
            TRQP   R
Sbjct: 1116 TRQPVEGR 1123



 Score =  114 bits (284), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 58/151 (38%), Positives = 91/151 (60%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKM-ERQGVTQVLSRLSYISGLGMMTRINS 243
           +F+I   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 448 EFNISLAVKHQTITNGLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNT 507

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM+ I+  +    +++ +  
Sbjct: 508 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSFSAPVIEFLEE 567

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E +        SS     VFVNG+  G+
Sbjct: 568 WGLESL---EENAHSSAACTKVFVNGVWMGV 595



 Score = 90.1 bits (222), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 46/109 (42%), Positives = 62/109 (56%), Gaps = 14/109 (12%)

Query: 718 ESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGK 777
           +SGI     TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGK
Sbjct: 731 KSGINAHTWTHCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGK 776

Query: 778 QAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
           QAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 777 QAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAI 825



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 58/114 (50%), Gaps = 14/114 (12%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A++ L    + H+ +       KA +   MI R++LA  +   LDDRD++G KRL+LAG 
Sbjct: 359 AQEILQKEMLPHVSMSEGSESKKAYFFGYMIHRLLLAAMERRELDDRDHFGKKRLDLAGP 418

Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYGN 555
           LL+ +F  +FK+   ++           KE N+S  V    + +G  + L  GN
Sbjct: 419 LLANLFRMLFKKLTRDVYRYLQKCVETHKEFNISLAVKHQTITNGLKYSLATGN 472



 Score = 43.5 bits (101), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 29/44 (65%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSD 157
           D W ++ SF  +KGLV+  +DSFD F+   +++L+  NA++  D
Sbjct: 33  DCWTVISSFFDQKGLVRQQLDSFDEFVQNTMQELVDENADLILD 76



 Score = 41.6 bits (96), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 20/87 (22%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVD--------------------IEYTR 380
           + +P + E+        P E RLR+LTYSAP+ +D                    I    
Sbjct: 101 LSRPTVTEADGSVVPVFPQEARLRNLTYSAPLYIDMKKRVLTGREDPDMPGEVTWIPEDP 160

Query: 381 GSQRVVRSDLVIGRMPIMLQSSKCVLR 407
            S+    + + IG++PIML+S+ C+LR
Sbjct: 161 DSENQEGTKVWIGKVPIMLRSTFCILR 187


>gi|255556051|ref|XP_002519060.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
 gi|223541723|gb|EEF43271.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
          Length = 1194

 Score =  215 bits (548), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 110/270 (40%), Positives = 167/270 (61%), Gaps = 19/270 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 720  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 779

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L +R+ +           ++ 
Sbjct: 780  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR---------DEEKK 830

Query: 1034 LGPLLEADTRKPV------YRHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            +G L++ D  +P        RH +   LD DG+  PG ++    V++ K+ P     A  
Sbjct: 831  MGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQEEAQG 890

Query: 1085 M-ATPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1143
              A    ++  +S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQK
Sbjct: 891  QSARYTRRDHSISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQK 950

Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G +G+   QEDMP+   GI PDII+NPH +
Sbjct: 951  GTVGMTYTQEDMPWTVEGITPDIIVNPHAI 980



 Score =  181 bits (459), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 86/184 (46%), Positives = 120/184 (65%)

Query: 1187 VSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQED 1246
            +S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   QED
Sbjct: 902  ISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 961

Query: 1247 MPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEE 1306
            MP+   GI PDII+NPH  PSRMT+G+LIE + GK     G   + T F    + ++ + 
Sbjct: 962  MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 1021

Query: 1307 LIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQP 1366
            L + GY  +G +  Y+G TG  L A I+ GP YYQ+LKHMV DKIH+R RGP  +LTRQP
Sbjct: 1022 LHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP 1081

Query: 1367 TGRR 1370
               R
Sbjct: 1082 AEGR 1085



 Score =  120 bits (300), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 64/146 (43%), Positives = 88/146 (60%), Gaps = 8/146 (5%)

Query: 192 MRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKV 251
           ++  TIT+ L  ++ TGNW        R GV+QVL+RL+Y S L  + R+NS   +  K+
Sbjct: 442 IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKL 501

Query: 252 SGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAM 311
           + PR L  SQWGM+CP++TPEG+ACGLVKNLALM +IT  +    +L+ +   G E    
Sbjct: 502 AKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTE---- 557

Query: 312 FNGEELSS---PGVYLVFVNGILAGI 334
            N EE+S    P    +FVNG   GI
Sbjct: 558 -NFEEISPAVIPQATKIFVNGCWVGI 582



 Score =  102 bits (253), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/141 (40%), Positives = 79/141 (56%), Gaps = 24/141 (17%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVS-----ESGIRP-----GVTTHLEIAPFTLLGVCA 741
           + D + +G IEY+D  E   + I+++     ++ I P        TH EI P  +LGVCA
Sbjct: 659 WHDLVAKGFIEYIDTEEEETTMISMTIHDLVQARINPEEAYSDTYTHCEIHPSLILGVCA 718

Query: 742 GIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYA 801
            I              +P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y 
Sbjct: 719 SI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYP 764

Query: 802 QRPMVESKTIRITNFHKLPAG 822
           Q+P+V ++ +   +F +LPAG
Sbjct: 765 QKPLVTTRAMEHLHFRQLPAG 785



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 57/121 (47%), Gaps = 14/121 (11%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           K+  +  A++ L    + H+ V       KA Y   +I R++L        DDRD+YGNK
Sbjct: 339 KEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNK 398

Query: 509 RLELAGSLLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYG 554
           RL+LAG LL  +F  +F++   ++           K+ NL   +    + SG  + L  G
Sbjct: 399 RLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATG 458

Query: 555 N 555
           N
Sbjct: 459 N 459



 Score = 49.3 bits (116), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 19/85 (22%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVR------------- 387
           + KP + ES   T    P   RLR+LTYSAP+ VD+     ++RV++             
Sbjct: 97  LSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV-----TKRVIKKGHDGEEVTETQD 151

Query: 388 -SDLVIGRMPIMLQSSKCVLRNKTE 411
            + + IG++PIML+SS C L   +E
Sbjct: 152 FTKVFIGKVPIMLRSSYCTLYQNSE 176


>gi|103001649|gb|ABF71516.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
            chlorophanum]
          Length = 691

 Score =  215 bits (548), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 108/265 (40%), Positives = 167/265 (63%), Gaps = 7/265 (2%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 356  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDQRMDTMANILYYPQKPLATTRSMEFLKF 415

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR+     K+      ++ 
Sbjct: 416  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSVVEQF 475

Query: 1034 LGPLLEADTRKPVY-RHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPE--- 1089
              P + +DT K  +  +  LD DGIVAPG ++    +++ K+ P IS  A  +       
Sbjct: 476  EKP-MRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAP-ISPDAEELGQRTKLH 533

Query: 1090 -YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
              ++V    + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHGQKG IG+
Sbjct: 534  VKRDVSTPLRSTENGIVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGI 593

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
               QEDMPF + G+ PD+I+NPH +
Sbjct: 594  TYRQEDMPFTKEGVVPDLIINPHAI 618



 Score =  135 bits (341), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 121/225 (53%), Gaps = 13/225 (5%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESG-ICPDIIMNPHGL 1173
            ++ Q  +P   D    +HG        G++  G+ V  ED+   ++  I PD       L
Sbjct: 471  VVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPISPD----AEEL 526

Query: 1174 KGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
                ++   ++V    + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHG
Sbjct: 527  GQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHG 586

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGT 1293
            QKG IG+   QEDMPF + G+ PD+I+NPH  PSRMT+  LIE    K   + G   + T
Sbjct: 587  QKGTIGITYRQEDMPFTKEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDAT 646

Query: 1294 AFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPV 1338
             F    +  V + L  HGY  +G ++ Y+G TG  L A ++ GP 
Sbjct: 647  PFTEVTVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 691



 Score =  114 bits (286), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 91/151 (60%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW   ++    + GV+QVL+R ++ S L  + R N+
Sbjct: 33  EFNLTLGVKSTTITNGLKYSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNT 92

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT     + +++ M  
Sbjct: 93  PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIEFMIQ 152

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
             +E +  +  E   SP    VFVNG+  G+
Sbjct: 153 RNMEVLEEY--EPQRSPNATKVFVNGVWVGV 181



 Score = 90.1 bits (222), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 340 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 385

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 386 YDQRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 425


>gi|449433841|ref|XP_004134705.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Cucumis
            sativus]
 gi|449479313|ref|XP_004155566.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Cucumis
            sativus]
          Length = 1199

 Score =  215 bits (548), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 110/270 (40%), Positives = 167/270 (61%), Gaps = 19/270 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 725  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 784

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L +R+ +           ++ 
Sbjct: 785  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR---------DEEKK 835

Query: 1034 LGPLLEADTRKPV------YRHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            +G L++ D  +P        RH +   LD DG+  PG ++    V++ K+ P     A  
Sbjct: 836  MGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQEEAQG 895

Query: 1085 MATP-EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1143
             A     ++  +S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQK
Sbjct: 896  QAARYSRRDHSISLRHSENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQK 955

Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G +G+   QEDMP+   GI PDII+NPH +
Sbjct: 956  GTVGMTYTQEDMPWTVEGITPDIIVNPHAI 985



 Score =  181 bits (458), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 86/184 (46%), Positives = 120/184 (65%)

Query: 1187 VSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQED 1246
            +S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   QED
Sbjct: 907  ISLRHSENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 966

Query: 1247 MPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEE 1306
            MP+   GI PDII+NPH  PSRMT+G+LIE + GK     G   + T F    + ++ + 
Sbjct: 967  MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 1026

Query: 1307 LIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQP 1366
            L + GY  +G +  Y+G TG  L A I+ GP YYQ+LKHMV DKIH+R RGP  +LTRQP
Sbjct: 1027 LHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP 1086

Query: 1367 TGRR 1370
               R
Sbjct: 1087 AEGR 1090



 Score =  120 bits (300), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 64/146 (43%), Positives = 88/146 (60%), Gaps = 8/146 (5%)

Query: 192 MRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKV 251
           ++  TIT+ L  ++ TGNW        R GV+QVL+RL+Y S L  + R+NS   +  K+
Sbjct: 447 IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKL 506

Query: 252 SGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAM 311
           + PR L  SQWGM+CP++TPEG+ACGLVKNLALM +IT  +    +L+ +   G E    
Sbjct: 507 AKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTE---- 562

Query: 312 FNGEELSS---PGVYLVFVNGILAGI 334
            N EE+S    P    +FVNG   GI
Sbjct: 563 -NFEEISPAVIPQATKIFVNGCWVGI 587



 Score =  102 bits (253), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/172 (37%), Positives = 87/172 (50%), Gaps = 40/172 (23%)

Query: 677 RPTFLNMHQFLGFKRFD----------------DFLYEGKIEYLDVNEGNDSHIAVS--- 717
           RP F+   Q L  K+ D                D + +G IEY+D  E   + I+++   
Sbjct: 633 RPLFIVEKQRLLIKKKDIHALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTISD 692

Query: 718 --ESGIRP-----GVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNT 770
             ++ I P        TH EI P  +LGVCA I              +P+P HNQ+PRNT
Sbjct: 693 LIQARINPVEAYSDTYTHCEIHPSLILGVCASI--------------IPFPDHNQSPRNT 738

Query: 771 YQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAG 822
           YQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F +LPAG
Sbjct: 739 YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG 790



 Score = 56.2 bits (134), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 57/121 (47%), Gaps = 14/121 (11%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           K+  +  A++ L    + H+ V       KA Y   +I R++L        DDRD+YGNK
Sbjct: 344 KEKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNK 403

Query: 509 RLELAGSLLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYG 554
           RL+LAG LL  +F  +F++   ++           K+ NL   +    + SG  + L  G
Sbjct: 404 RLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATG 463

Query: 555 N 555
           N
Sbjct: 464 N 464



 Score = 50.1 bits (118), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 19/85 (22%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVR------------- 387
           + KP + ES   T    P   RLR+LTYSAP+ VD+     S+RV++             
Sbjct: 102 LSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV-----SKRVIKKGHDGEEVTETQD 156

Query: 388 -SDLVIGRMPIMLQSSKCVLRNKTE 411
            + + IG++PIML+SS C L   +E
Sbjct: 157 FTKVFIGKVPIMLRSSYCTLYQNSE 181


>gi|410610287|gb|AFV74912.1| RNA polymerase II second largest subunit, partial [Schoepfia
            jasminodora]
          Length = 569

 Score =  215 bits (548), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 111/270 (41%), Positives = 167/270 (61%), Gaps = 19/270 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 196  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 255

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +++  YSGY+ ED++IMN++S+DRGF R L +R+ +           ++ 
Sbjct: 256  RQLPAGINAIVSIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR---------DEEKK 306

Query: 1034 LGPLLEADTRKPV------YRHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            +G L++ D  +P        RH +   LD DG+  PG ++    V++ K+ P     +  
Sbjct: 307  MGTLVKEDFGRPNRMDTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIAQDESQG 366

Query: 1085 MATPEYK-EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1143
             AT   K +   S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQK
Sbjct: 367  QATRYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQK 426

Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G IG+   QEDMP+   GI PDII+NPH +
Sbjct: 427  GTIGMTYTQEDMPWTVEGITPDIIVNPHAI 456



 Score =  181 bits (458), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 87/184 (47%), Positives = 119/184 (64%)

Query: 1187 VSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQED 1246
             S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG IG+   QED
Sbjct: 378  TSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTIGMTYTQED 437

Query: 1247 MPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEE 1306
            MP+   GI PDII+NPH  PSRMT+G+LIE + GK     G   + T F    + ++ + 
Sbjct: 438  MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHVGKEGDATPFTDVTVDNISKA 497

Query: 1307 LIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQP 1366
            L + GY  +G +  Y+G TG  L A I+ GP YYQ+LKHMV DKIH+R RGP  +LTRQP
Sbjct: 498  LHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP 557

Query: 1367 TGRR 1370
               R
Sbjct: 558  AEGR 561



 Score =  103 bits (256), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/141 (41%), Positives = 79/141 (56%), Gaps = 24/141 (17%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGI-----RPG-----VTTHLEIAPFTLLGVCA 741
           + D + +G IEY+D  E   + I+++ S +      PG       TH EI P  +LGVCA
Sbjct: 135 WHDLVAKGFIEYIDTEEEETTMISMTISDLVSARTNPGEAYSETYTHCEIHPSLILGVCA 194

Query: 742 GIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYA 801
            I              +P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y 
Sbjct: 195 SI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYP 240

Query: 802 QRPMVESKTIRITNFHKLPAG 822
           Q+P+V ++ +   +F +LPAG
Sbjct: 241 QKPLVTTRAMEHLHFRQLPAG 261



 Score = 43.1 bits (100), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 34/63 (53%), Gaps = 8/63 (12%)

Query: 275 ACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMFNGEELSS---PGVYLVFVNGIL 331
           ACGLVKNLALM +IT  +    +L+ +   G E     N EE+S    P    +FVNG  
Sbjct: 1   ACGLVKNLALMVYITVGSAASPILEFLEEWGTE-----NFEEISPAVIPQATKIFVNGCW 55

Query: 332 AGI 334
            GI
Sbjct: 56  VGI 58


>gi|92090854|gb|ABE73203.1| RNA polymerase II second largest subunit, partial [Hydropus cf.
            scabripes PBM 2513]
          Length = 687

 Score =  215 bits (548), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 105/263 (39%), Positives = 162/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 345  IIPFPDHNQSPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILFYPQKPLATTRSMEYLKF 404

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+      +  
Sbjct: 405  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLAKKVGQNAGEEF 464

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS-AISMATPEY-- 1090
              P  E   R     +  L+ DG++APG  +    +++ K+ P    S  +   T ++  
Sbjct: 465  GKPSRENTLRMKHGTYDKLEDDGLIAPGTGVVGEDIIIGKTAPIPPESEELGQRTSKHTK 524

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NS+    +K+ +R  R P+IGDKF+SRHGQKG IG+  
Sbjct: 525  RDVSTPLKSTENGTVDQVLITTNSDGQTFVKVRVRSIRIPQIGDKFASRHGQKGTIGITY 584

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 585  RQEDMPFTAEGIVPDIIINPHAI 607



 Score =  158 bits (399), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 74/163 (45%), Positives = 103/163 (63%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++NS+    +K+ +R  R P+IGDKF+SRHGQKG IG+  
Sbjct: 525  RDVSTPLKSTENGTVDQVLITTNSDGQTFVKVRVRSIRIPQIGDKFASRHGQKGTIGITY 584

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 585  RQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVES 644

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKH 1345
            V E L + GY  +G ++ Y G TG  L+A +Y GP YYQ+LKH
Sbjct: 645  VSEYLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKH 687



 Score =  110 bits (274), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 91/151 (60%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F +   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 39  EFKLAVAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT 98

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM  I+  +    +++ +  
Sbjct: 99  PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEE 158

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E  ++      ++P    VFVNG+  G+
Sbjct: 159 WGLE--SLEENANSTTPCTK-VFVNGVWMGV 186



 Score = 91.3 bits (225), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 48/121 (39%), Positives = 66/121 (54%), Gaps = 14/121 (11%)

Query: 706 VNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQ 765
            N+G     A  ++GI     TH EI P  +LG+CA I              +P+P HNQ
Sbjct: 308 ANDGEFDPAARLKAGINAHTWTHCEIHPSMILGICASI--------------IPFPDHNQ 353

Query: 766 APRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQ 825
           +PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  
Sbjct: 354 SPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILFYPQKPLATTRSMEYLKFRELPAGQNA 413

Query: 826 I 826
           I
Sbjct: 414 I 414


>gi|86559347|gb|ABD04081.1| RNA polymerase II second largest subunit, partial [Coniophora arida]
          Length = 711

 Score =  215 bits (548), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 348  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKF 407

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 408  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEF 467

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  ++ DG++APG  +    +++ K+ P    S        T   
Sbjct: 468  EKPTRDTTLRMKHGTYDKIEDDGLIAPGTGVSGEDIIIGKTAPIPPDSEELGQRTRTHTR 527

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 528  RDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITY 587

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 588  RQEDMPFTAEGIVPDIIINPHAI 610



 Score =  191 bits (485), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 90/184 (48%), Positives = 121/184 (65%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 528  RDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITY 587

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 588  RQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVES 647

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
            V   L + GY  +G ++ Y G TG  L+A +Y GP YYQ+LKHMV DKIH+R+RGP  +L
Sbjct: 648  VSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMVDDKIHSRARGPVQIL 707

Query: 1363 TRQP 1366
            TRQP
Sbjct: 708  TRQP 711



 Score =  111 bits (278), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 58/151 (38%), Positives = 91/151 (60%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKM-ERQGVTQVLSRLSYISGLGMMTRINS 243
           +F+I   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 40  EFNISLAVKHQTITNGLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNT 99

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM+ I+  +    +++ +  
Sbjct: 100 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSFSAPVIEFLEE 159

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E +        SS     VFVNG+  G+
Sbjct: 160 WGLESL---EENAHSSTVCTKVFVNGVWMGV 187



 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/109 (42%), Positives = 62/109 (56%), Gaps = 14/109 (12%)

Query: 718 ESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGK 777
           +SGI     TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGK
Sbjct: 323 KSGINAHTWTHCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGK 368

Query: 778 QAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
           QAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 369 QAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAI 417


>gi|40644039|emb|CAD92460.1| RNA polymerase II [Escallonia sp. Oxelman 2340]
          Length = 543

 Score =  215 bits (548), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 111/270 (41%), Positives = 167/270 (61%), Gaps = 19/270 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 196  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNFQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 255

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L +R+ +           ++ 
Sbjct: 256  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSVDRGFFRSLFFRSYR---------DEEKK 306

Query: 1034 LGPLLEADTRKPV------YRHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            +G L++ D  +P        RH +   LD DG+  PG ++    V++ K+ P     A  
Sbjct: 307  MGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDDAQG 366

Query: 1085 MATPEYK-EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1143
             A+   K +   S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQK
Sbjct: 367  QASRYSKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQK 426

Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G +G+   QEDMP+   GI PDII+NPH +
Sbjct: 427  GTVGMTYTQEDMPWTAEGITPDIIVNPHAI 456



 Score =  161 bits (408), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 76/166 (45%), Positives = 107/166 (64%)

Query: 1187 VSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQED 1246
             S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   QED
Sbjct: 378  TSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 437

Query: 1247 MPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEE 1306
            MP+   GI PDII+NPH  PSRMT+G+LIE + GK     G   + T F    + ++ + 
Sbjct: 438  MPWTAEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 497

Query: 1307 LIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIH 1352
            L + GY  +G +  Y+G TG  L A I+ GP YYQ+LKHMV DKIH
Sbjct: 498  LHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIH 543



 Score = 99.4 bits (246), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/172 (36%), Positives = 85/172 (49%), Gaps = 40/172 (23%)

Query: 677 RPTFLNMHQFLGFKRFD----------------DFLYEGKIEYLDVNEGNDSHIAVSESG 720
           RP F+   Q L  K+ D                D + +G IEY+D  E   + I+++ + 
Sbjct: 104 RPLFIVNKQRLLIKKADIQALQQRETPEDGGWHDLVAKGYIEYIDTEEEETTMISMTIND 163

Query: 721 IRPG----------VTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNT 770
           +               TH EI P  +LGVCA I              +P+P HNQ+PRNT
Sbjct: 164 LVSARLNPEEAYSETYTHCEIHPSLILGVCASI--------------IPFPDHNQSPRNT 209

Query: 771 YQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAG 822
           YQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F +LPAG
Sbjct: 210 YQSAMGKQAMGIYVTNFQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG 261



 Score = 42.0 bits (97), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 34/63 (53%), Gaps = 8/63 (12%)

Query: 275 ACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMFNGEELSS---PGVYLVFVNGIL 331
           ACGLVKNLALM +IT  +    +L+ +   G E     N EE+S    P    +FVNG  
Sbjct: 1   ACGLVKNLALMVYITVGSAAYPILEFLEEWGTE-----NFEEISPAVIPPATKIFVNGCW 55

Query: 332 AGI 334
            GI
Sbjct: 56  VGI 58


>gi|356558375|ref|XP_003547482.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Glycine
            max]
          Length = 1193

 Score =  215 bits (548), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 110/270 (40%), Positives = 167/270 (61%), Gaps = 19/270 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 720  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 779

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L +R+ +           ++ 
Sbjct: 780  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR---------DEEKK 830

Query: 1034 LGPLLEADTRKPV------YRHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            +G L++ D  +P        RH +   LD DG+  PG ++    V++ K+ P     A  
Sbjct: 831  MGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQEEAQG 890

Query: 1085 MATP-EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1143
             A     ++  +S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQK
Sbjct: 891  QALRYTRRDHSISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQK 950

Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G +G+   QEDMP+   GI PDII+NPH +
Sbjct: 951  GTVGMTYTQEDMPWTVEGITPDIIVNPHAI 980



 Score =  181 bits (460), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 86/184 (46%), Positives = 120/184 (65%)

Query: 1187 VSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQED 1246
            +S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   QED
Sbjct: 902  ISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 961

Query: 1247 MPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEE 1306
            MP+   GI PDII+NPH  PSRMT+G+LIE + GK     G   + T F    + ++ + 
Sbjct: 962  MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 1021

Query: 1307 LIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQP 1366
            L + GY  +G +  Y+G TG  L A I+ GP YYQ+LKHMV DKIH+R RGP  +LTRQP
Sbjct: 1022 LHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP 1081

Query: 1367 TGRR 1370
               R
Sbjct: 1082 AEGR 1085



 Score =  119 bits (299), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 64/146 (43%), Positives = 88/146 (60%), Gaps = 8/146 (5%)

Query: 192 MRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKV 251
           ++  TIT+ L  ++ TGNW        R GV+QVL+RL+Y S L  + R+NS   +  K+
Sbjct: 442 IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKL 501

Query: 252 SGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAM 311
           + PR L  SQWGM+CP++TPEG+ACGLVKNLALM +IT  +    +L+ +   G E    
Sbjct: 502 AKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTE---- 557

Query: 312 FNGEELSS---PGVYLVFVNGILAGI 334
            N EE+S    P    +FVNG   GI
Sbjct: 558 -NFEEISPAVIPQATKIFVNGCWMGI 582



 Score =  104 bits (260), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 58/141 (41%), Positives = 80/141 (56%), Gaps = 24/141 (17%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVS-----ESGIRP-----GVTTHLEIAPFTLLGVCA 741
           + D + +G IEY+D  E   + I+++     ++ I P     G  TH EI P  +LGVCA
Sbjct: 659 WHDLVSKGFIEYIDTEEEETTMISMTINDLVQARINPEDAYAGTYTHCEIHPSLILGVCA 718

Query: 742 GIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYA 801
            I              +P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y 
Sbjct: 719 SI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYP 764

Query: 802 QRPMVESKTIRITNFHKLPAG 822
           Q+P+V ++ +   +F +LPAG
Sbjct: 765 QKPLVTTRAMEHLHFRQLPAG 785



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 57/121 (47%), Gaps = 14/121 (11%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           K+  +  A++ L    + H+ V       KA Y   +I R++L        DDRD+YGNK
Sbjct: 339 KEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNK 398

Query: 509 RLELAGSLLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYG 554
           RL+LAG LL  +F  +F++   ++           K+ NL   +    + SG  + L  G
Sbjct: 399 RLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATG 458

Query: 555 N 555
           N
Sbjct: 459 N 459



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 19/85 (22%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVR------------- 387
           + KP + ES   T    P   RLR+LTYSAP+ VD+     S+RVV+             
Sbjct: 97  LSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV-----SKRVVKKGHDGEEVTETQD 151

Query: 388 -SDLVIGRMPIMLQSSKCVLRNKTE 411
            + + IG++PIML+SS C L   +E
Sbjct: 152 LTKVFIGKVPIMLRSSYCTLYQNSE 176


>gi|300394690|gb|ADK11883.1| DNA-directed RNA polymerase II subunit two, partial [Coniophora
            puteana]
          Length = 648

 Score =  215 bits (548), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 315  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKF 374

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 375  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEF 434

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  ++ DG++APG  +    +++ K+ P    S        T   
Sbjct: 435  EKPTRDTTLRMKHGTYDKIEDDGLIAPGTGVSGEDIIIGKTAPIPPDSEELGQRTRTHTR 494

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 495  RDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITY 554

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 555  RQEDMPFTAEGIVPDIIINPHAI 577



 Score =  140 bits (353), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 67/152 (44%), Positives = 94/152 (61%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 495  RDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITY 554

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 555  RQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVES 614

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIY 1334
            V   L + GY  +G ++ Y G TG  L+A +Y
Sbjct: 615  VSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVY 646



 Score =  113 bits (283), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 58/151 (38%), Positives = 91/151 (60%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKM-ERQGVTQVLSRLSYISGLGMMTRINS 243
           +F+I   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 7   EFNISLAVKHQTITNGLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNT 66

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM+ I+  +    +++ +  
Sbjct: 67  PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSFSAPVIEFLEE 126

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E +        SS     VFVNG+  G+
Sbjct: 127 WGLESL---EENAHSSAACTKVFVNGVWMGV 154



 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/109 (42%), Positives = 62/109 (56%), Gaps = 14/109 (12%)

Query: 718 ESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGK 777
           +SGI     TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGK
Sbjct: 290 KSGINAHTWTHCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGK 335

Query: 778 QAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
           QAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 336 QAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAI 384


>gi|300394674|gb|ADK11875.1| DNA-directed RNA polymerase II subunit two, partial [Amylocorticium
            cebennense]
          Length = 689

 Score =  215 bits (548), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 162/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 353  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMMYLKF 412

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  ++ 
Sbjct: 413  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEQF 472

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  ++ DG++APG  +    +++ K+ P    S        T   
Sbjct: 473  EKPTRDNTLRMKHGTYDKIEDDGLIAPGTGVAGEDIIIGKTAPIPPDSEELGQRTRTHTR 532

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 533  RDVSTPLKSTETGIVDQVLITTNSEGQKFVKVRVRATRIPQIGDKFASRHGQKGTIGITY 592

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 593  RQEDMPFTAEGIVPDIIINPHAI 615



 Score =  152 bits (384), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 86/224 (38%), Positives = 121/224 (54%), Gaps = 11/224 (4%)

Query: 1124 LRQTRRPEIGDKFSSRHGQKGVI---GLI-----VEQEDMPFNESGICPDIIMNPHGLKG 1175
            L Q  +P   +    +HG    I   GLI     V  ED+   ++   P    +   L  
Sbjct: 469  LEQFEKPTRDNTLRMKHGTYDKIEDDGLIAPGTGVAGEDIIIGKTAPIPP---DSEELGQ 525

Query: 1176 CDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1235
              R    ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQK
Sbjct: 526  RTRTHTRRDVSTPLKSTETGIVDQVLITTNSEGQKFVKVRVRATRIPQIGDKFASRHGQK 585

Query: 1236 GVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAF 1295
            G IG+   QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F
Sbjct: 586  GTIGITYRQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPF 645

Query: 1296 GGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVY 1339
                +  V + L++ GY  +G ++ Y G TG  L+A IY GP Y
Sbjct: 646  TDLTVESVSKFLLQKGYQSRGMEVMYHGHTGRKLQAQIYLGPTY 689



 Score =  111 bits (277), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 92/151 (60%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKM-ERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 46  EFNVSLAVKHQTITNGLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNT 105

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM  I+  +    +++ +  
Sbjct: 106 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMACISVGSISAPVIEFLEE 165

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E  ++      S+P    VFVNG+  G+
Sbjct: 166 WGLE--SLEENAHSSTPCTK-VFVNGVWMGV 193



 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 77/165 (46%), Gaps = 43/165 (26%)

Query: 691 RFDDFLYEGKIEYLDVNEGNDSHIAVS-----------------------------ESGI 721
           ++D+ +  G IE LD  E     IA++                             ++G+
Sbjct: 272 KWDELVKHGIIELLDAEEEETVMIAMTPEDLDNSRLQQGALDLRKLDEEFDPAARLKAGV 331

Query: 722 RPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMG 781
                TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG
Sbjct: 332 NAHTWTHCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMG 377

Query: 782 CIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
               N   R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 378 IYLTNFLVRMDTMANILYYPQKPLATTRSMMYLKFRELPAGQNAI 422


>gi|68300794|gb|AAY89340.1| RNA polymerase II second largest subunit [Berberidopsis beckleri]
          Length = 873

 Score =  215 bits (548), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 110/270 (40%), Positives = 167/270 (61%), Gaps = 19/270 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 613  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHF 672

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L +R+ +           ++ 
Sbjct: 673  RQLPAGINAIVAITCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR---------DEEKK 723

Query: 1034 LGPLLEADTRKPV------YRHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            +G L++ D  +P        RH +   LD DG+  PG ++    V++ K+ P     A  
Sbjct: 724  MGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDAQG 783

Query: 1085 MATP-EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1143
             A+    ++   S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQK
Sbjct: 784  QASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQK 843

Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G +G+   QEDMP+   GI PDII+NPH +
Sbjct: 844  GTVGMTYTQEDMPWTVEGITPDIIVNPHAI 873



 Score =  116 bits (291), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 62/146 (42%), Positives = 87/146 (59%), Gaps = 8/146 (5%)

Query: 192 MRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKV 251
           ++  TIT+ L  ++ TGNW        R GV+QVL+RL+Y S L  + R+NS   +  K+
Sbjct: 335 IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKL 394

Query: 252 SGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAM 311
           + PR L  S WGM+CP++TPEG+ACGLVKNLALM +IT  +    +L+ +     E  + 
Sbjct: 395 AKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFL-----EEWST 449

Query: 312 FNGEELSS---PGVYLVFVNGILAGI 334
            N EE+S    P    +FVNG   GI
Sbjct: 450 ENFEEISPAVIPQATKIFVNGCWVGI 475



 Score = 99.8 bits (247), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 56/141 (39%), Positives = 78/141 (55%), Gaps = 24/141 (17%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVS-----ESGIRPG-----VTTHLEIAPFTLLGVCA 741
           + D + +G IEY+D  E   + I+++      + + P        TH EI P  +LGVCA
Sbjct: 552 WHDLVAKGFIEYVDTEEEETTMISMTINDLISAKLNPEEAYSETYTHCEIHPSLILGVCA 611

Query: 742 GIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYA 801
            I              +P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y 
Sbjct: 612 SI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYP 657

Query: 802 QRPMVESKTIRITNFHKLPAG 822
           Q+P+V ++ +   +F +LPAG
Sbjct: 658 QKPLVTTRAMEHLHFRQLPAG 678



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/78 (47%), Positives = 54/78 (69%)

Query: 1187 VSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQED 1246
             S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   QED
Sbjct: 795  TSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 854

Query: 1247 MPFNESGICPDIIMNPHG 1264
            MP+   GI PDII+NPH 
Sbjct: 855  MPWTVEGITPDIIVNPHA 872



 Score = 54.3 bits (129), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 14/114 (12%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A++ L    + H+ V       KA Y   +I R++L        DDRD+YGNKRL+LAG 
Sbjct: 239 AKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP 298

Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYGN 555
           LL  +F  +F++   ++           K+ NL   +    + SG  + L  GN
Sbjct: 299 LLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGN 352



 Score = 43.1 bits (100), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 19/68 (27%)

Query: 358 PHECRLRDLTYSAPITVDIEYTRGSQRVVR--------------SDLVIGRMPIMLQSSK 403
           P   RLR+LTYSAP+ VD+     ++RV++              + + IG++PIML+SS 
Sbjct: 7   PKAARLRNLTYSAPLYVDV-----TKRVIKKGHDCEEVTETQDFTKVFIGKVPIMLRSSY 61

Query: 404 CVLRNKTE 411
           C +   +E
Sbjct: 62  CTVYQNSE 69


>gi|88601070|gb|ABD46531.1| RNA polymerase II second largest subunit, partial [Punctularia
            strigosozonata]
          Length = 701

 Score =  215 bits (548), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 107/263 (40%), Positives = 163/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 369  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKF 428

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+M YSGY+ ED++IMN++S+DRG  R + +R+   + K+   Q  +  
Sbjct: 429  RELPAGQNAIVAIMCYSGYNQEDSVIMNQSSIDRGLFRSMYFRSYMDMEKKSGIQQLEEF 488

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS-AISMATPEY-- 1090
              P  +   R     +  L+ DG++APG  +    +++ K+ P    S  +   T  +  
Sbjct: 489  EKPTRDTTLRMKHGTYDKLEDDGLIAPGTNVNGEDIIIGKTAPIPPDSEELGQRTRGHTR 548

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 549  RDVSTPLKSTEQGTVDQVLITTNSEGQKFVKVRIRSTRIPQIGDKFASRHGQKGTIGITY 608

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 609  RQEDMPFTAEGITPDIIINPHAI 631



 Score =  142 bits (359), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 68/152 (44%), Positives = 95/152 (62%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 549  RDVSTPLKSTEQGTVDQVLITTNSEGQKFVKVRIRSTRIPQIGDKFASRHGQKGTIGITY 608

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 609  RQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVES 668

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIY 1334
            V + L + GY  +G ++ Y G TG  L+A IY
Sbjct: 669  VSQFLRQRGYQSRGLEVMYHGHTGRKLQAQIY 700



 Score =  112 bits (279), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 93/151 (61%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           QF++   ++ +TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 46  QFNLSLAVKHNTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT 105

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNL+LM  I+  +    +++ +  
Sbjct: 106 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMATISVGSISAPVIEFLEE 165

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E  ++      S+P    VFVNG+  G+
Sbjct: 166 WGLE--SLEENAHSSTPCTK-VFVNGVWMGV 193



 Score = 94.4 bits (233), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 107/235 (45%), Gaps = 52/235 (22%)

Query: 678 PTF-LNMHQFLGFKRFDDFLYEGKIEYLDVNEGNDSHIAVS------------------- 717
           PTF  N  Q     +FD+ + EG IEYLD  E     I ++                   
Sbjct: 274 PTFDENGKQRFFQYQFDELVKEGVIEYLDAEEEETVMICMTPEDLENARLKQQGHDPSQD 333

Query: 718 ----------ESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAP 767
                     ++G +  + TH EI P  +LG+CA I              +P+P HNQ+P
Sbjct: 334 DPDFDPAARIKTGTQAHLWTHCEIHPSMILGICASI--------------IPFPDHNQSP 379

Query: 768 RNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQIS 827
           RNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  I 
Sbjct: 380 RNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIV 439

Query: 828 PGGAEELTARESCHEVLKIISFSISVAVFDSVWLG-----DVKQGVHQLSEEKEP 877
              A    +  +  + + +   SI   +F S++       + K G+ QL E ++P
Sbjct: 440 ---AIMCYSGYNQEDSVIMNQSSIDRGLFRSMYFRSYMDMEKKSGIQQLEEFEKP 491


>gi|336376994|gb|EGO05329.1| hypothetical protein SERLA73DRAFT_101102 [Serpula lacrymans var.
            lacrymans S7.3]
 gi|336390144|gb|EGO31287.1| DNA-directed RNA polymerase II, subunit 2 [Serpula lacrymans var.
            lacrymans S7.9]
          Length = 1209

 Score =  215 bits (548), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 737  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKF 796

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 797  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEF 856

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 857  EKPTRDNTLRMKHGTYDKLEDDGLIAPGTGVSGEDIIIGKTAPIPPDSEELGQRTRTHTR 916

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 917  RDVSTPLKSTENGIVDQVLITTNSEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 976

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDI++NPH +
Sbjct: 977  RQEDMPFTAEGIVPDIVINPHAI 999



 Score =  191 bits (484), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 90/188 (47%), Positives = 122/188 (64%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 917  RDVSTPLKSTENGIVDQVLITTNSEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 976

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDI++NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 977  RQEDMPFTAEGIVPDIVINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVES 1036

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
            V   L + GY  +G ++ Y G TG  L+A +Y GP YYQ+LKHMV DKIH+R+RGP  +L
Sbjct: 1037 VSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMVDDKIHSRARGPVQIL 1096

Query: 1363 TRQPTGRR 1370
            TRQP   R
Sbjct: 1097 TRQPVEGR 1104



 Score =  111 bits (277), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 91/151 (60%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 430 EFNLSLAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT 489

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM+ I+  +    +++ +  
Sbjct: 490 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSYSAPVIEFLEE 549

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E +        SS     VFVNG+  G+
Sbjct: 550 WGLESL---EENAHSSTPCTKVFVNGVWMGV 577



 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/177 (33%), Positives = 89/177 (50%), Gaps = 22/177 (12%)

Query: 706 VNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQ 765
            N+G+    A  ++G      TH EI P  +LGVCA I              +P+P HNQ
Sbjct: 700 TNDGDYDPAARLKAGNNSHTWTHCEIHPSMILGVCASI--------------IPFPDHNQ 745

Query: 766 APRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQ 825
           +PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  
Sbjct: 746 SPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNA 805

Query: 826 ISPGGAEELTARESCHEVLKIISFSISVAVFDSVWLG-----DVKQGVHQLSEEKEP 877
           I    A    +  +  + + +   SI   +F S++       + K GV QL E ++P
Sbjct: 806 IV---AILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKP 859



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 58/114 (50%), Gaps = 14/114 (12%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A++ L    + H+ +       KA +   MI R++LA  +   LDDRD++G KRL+LAG 
Sbjct: 341 AQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAALERRELDDRDHFGKKRLDLAGP 400

Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYGN 555
           LL+ +F  +F++   ++           KE NLS  V    + +G  + L  GN
Sbjct: 401 LLANLFRMLFRKLTRDVYRYLQKCVETHKEFNLSLAVKHQTITNGLKYSLATGN 454



 Score = 43.9 bits (102), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 30/44 (68%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSD 157
           D W ++ SF ++KGLV+  +DSFD F+   +++L+  NA++  D
Sbjct: 15  DCWTVISSFFEQKGLVRQQLDSFDEFVQNTMQELVDENADLILD 58


>gi|300394730|gb|ADK11903.1| DNA-directed RNA polymerase II subunit two, partial [Pisolithus
            arhizus]
          Length = 321

 Score =  215 bits (548), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 107/263 (40%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 18   IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKF 77

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+M YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 78   RELPAGQNAIVAIMCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEF 137

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  E   R     +  L+ DG++APG +     +++ K+ P    S        T   
Sbjct: 138  EKPTRETTLRMKHGTYDKLEDDGLIAPGIRALGEDIIIGKTAPIPPDSEELGQRTRTHTR 197

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 198  RDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITY 257

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             Q+DMPF   GI PD+I+NPH +
Sbjct: 258  RQDDMPFTAEGITPDLIINPHAI 280



 Score =  119 bits (298), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 53/113 (46%), Positives = 75/113 (66%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 198  RDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITY 257

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAF 1295
             Q+DMPF   GI PD+I+NPH  PSRMT+G L+E L  K   + GN  + T F
Sbjct: 258  RQDDMPFTAEGITPDLIINPHAIPSRMTIGHLVECLLSKVATLLGNEGDATPF 310



 Score = 87.4 bits (215), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 55/156 (35%), Positives = 81/156 (51%), Gaps = 22/156 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LGVCA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 2   THCEIHPSMILGVCASI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYLTN 47

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQISPGGAEELTARESCHEVLKI 846
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I    A    +  +  + + +
Sbjct: 48  FLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIV---AIMCYSGYNQEDSVIM 104

Query: 847 ISFSISVAVFDSVWLG-----DVKQGVHQLSEEKEP 877
              SI   +F S++       + K G+ QL E ++P
Sbjct: 105 NQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEFEKP 140


>gi|68300812|gb|AAY89347.1| RNA polymerase II second largest subunit [Petunia x hybrida]
          Length = 1195

 Score =  215 bits (548), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 111/270 (41%), Positives = 167/270 (61%), Gaps = 19/270 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 721  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 780

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L +R+ +           ++ 
Sbjct: 781  RQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR---------DEEKK 831

Query: 1034 LGPLLEADTRKPV------YRHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            +G L++ D  +P        RH +   LD DG+  PG ++    V++ K+ P     A  
Sbjct: 832  MGTLVKEDFGRPDRASTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDAQG 891

Query: 1085 MATP-EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1143
             A+    K+   S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQK
Sbjct: 892  QASRYTRKDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQK 951

Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G +G+   QEDMP+   GI PDII+NPH +
Sbjct: 952  GTVGMTYTQEDMPWTIEGITPDIIVNPHAI 981



 Score =  180 bits (457), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 87/188 (46%), Positives = 121/188 (64%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            K+   S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+  
Sbjct: 899  KDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTY 958

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMP+   GI PDII+NPH  PSRMT+G+LIE + GK     G   + T F    + +
Sbjct: 959  TQEDMPWTIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDN 1018

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
            + + L + GY  +G +  Y+G TG  L A I+ GP YYQ+LKHMV DKIH+R RGP  +L
Sbjct: 1019 ISKALHKCGYQMRGFETMYNGHTGRRLPAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQIL 1078

Query: 1363 TRQPTGRR 1370
            TRQP   R
Sbjct: 1079 TRQPAEGR 1086



 Score =  119 bits (298), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 63/146 (43%), Positives = 88/146 (60%), Gaps = 8/146 (5%)

Query: 192 MRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKV 251
           ++  TIT+ L  ++ TGNW        R GV+QVL+RL+Y S L  + R+NS   +  K+
Sbjct: 443 IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKL 502

Query: 252 SGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAM 311
           + PR L  SQWGM+CP++TPEG+ACGLVKNLALM +IT  +    +L+ +   G E    
Sbjct: 503 AKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEXGTE---- 558

Query: 312 FNGEELSS---PGVYLVFVNGILAGI 334
            N EE+S    P    +FVBG   GI
Sbjct: 559 -NFEEISPAVIPQATKIFVBGTWMGI 583



 Score =  103 bits (256), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 57/141 (40%), Positives = 79/141 (56%), Gaps = 24/141 (17%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVS-----ESGIRP-----GVTTHLEIAPFTLLGVCA 741
           + D + +G IEY+D  E   + I+++     ++ I P        TH EI P  +LGVCA
Sbjct: 660 WHDLVAKGYIEYIDTEEEETTMISMTINDLVQASINPEDAYSDTYTHCEIHPSLILGVCA 719

Query: 742 GIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYA 801
            I              +P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y 
Sbjct: 720 SI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYP 765

Query: 802 QRPMVESKTIRITNFHKLPAG 822
           Q+P+V ++ +   +F +LPAG
Sbjct: 766 QKPLVTTRAMEHLHFRQLPAG 786



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 57/121 (47%), Gaps = 14/121 (11%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           K+  +  A++ L    + H+ V       KA Y   +I R++L        DDRD+YGNK
Sbjct: 340 KEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNK 399

Query: 509 RLELAGSLLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYG 554
           RL+LAG LL  +F  +F++   ++           K+ NL   +    + SG  + L  G
Sbjct: 400 RLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATG 459

Query: 555 N 555
           N
Sbjct: 460 N 460



 Score = 49.3 bits (116), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 19/85 (22%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVR------------- 387
           + KP + ES   T    P   RLR+LTYSAP+ VD+     ++RV++             
Sbjct: 98  LSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV-----TKRVIKKGHDGEEVTETQD 152

Query: 388 -SDLVIGRMPIMLQSSKCVLRNKTE 411
            + + IG++PIML+SS C L   +E
Sbjct: 153 FTKVFIGKVPIMLRSSYCTLYQNSE 177



 Score = 42.0 bits (97), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 29/41 (70%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANI 154
           D W ++ ++ +EKGLV+  +DSFD FI   +++++  +A+I
Sbjct: 28  DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADI 68


>gi|119644234|gb|ABL85614.1| RNA polymerase II second largest subunit [Coccocarpia domingensis]
          Length = 667

 Score =  215 bits (548), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 104/263 (39%), Positives = 159/263 (60%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRN YQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 374  IIPFPDHNQSPRNCYQSAMGKQAMGVFLTNYDQRMDTMANILYYPQKPLATTRSMEFLKF 433

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR      KQ      ++ 
Sbjct: 434  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQEKQIGRSVVEQF 493

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEY--- 1090
              P+     R     +  LD DGIVAPG ++    +++ K+ P    +       +Y   
Sbjct: 494  EKPMRSDTLRLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKYHVK 553

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    + +    +++VLV++N+E    +K+ +R T+ P+IGDKF+SRHGQKG +G+  
Sbjct: 554  RDVSTPLRSTENGIVDQVLVTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTVGITY 613

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   G+ PD+I+NPH +
Sbjct: 614  RQEDMPFTAEGVVPDLIINPHAI 636



 Score =  110 bits (275), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 63/187 (33%), Positives = 101/187 (54%), Gaps = 19/187 (10%)

Query: 1121 KMLLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESG-ICPDIIMNPH 1171
            + ++ Q  +P   D    +HG        G++  G+ V  ED+   ++  I PD      
Sbjct: 487  RSVVEQFEKPMRSDTLRLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDA----- 541

Query: 1172 GLKGCDRITEY---KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKF 1228
              +   + T+Y   ++V    + +    +++VLV++N+E    +K+ +R T+ P+IGDKF
Sbjct: 542  --EELGQRTKYHVKRDVSTPLRSTENGIVDQVLVTTNAEGLRFVKVRMRTTKIPQIGDKF 599

Query: 1229 SSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGN 1288
            +SRHGQKG +G+   QEDMPF   G+ PD+I+NPH  PSRMT+  LIE    K   + G 
Sbjct: 600  ASRHGQKGTVGITYRQEDMPFTAEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGF 659

Query: 1289 YKEGTAF 1295
              + T F
Sbjct: 660  EGDATPF 666



 Score =  105 bits (261), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 51/139 (36%), Positives = 85/139 (61%), Gaps = 3/139 (2%)

Query: 197 ITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVSGPR 255
           +TN L  ++ TGNW+ ++   + + GV+QVL+R +Y S L  + R N+   +  K++ PR
Sbjct: 58  LTNGLKYSLATGNWSEQKKAAQGKAGVSQVLNRYTYASTLSHLRRTNTPLGRDGKIAKPR 117

Query: 256 SLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMFNGE 315
            L  + WG++CP++TPEG+ACGLVKNLALM ++T  +    ++  + +  +E +  +  E
Sbjct: 118 QLHNTHWGLVCPAETPEGQACGLVKNLALMCYVTVGSPGWPVIDFLQSRNMELLEEY--E 175

Query: 316 ELSSPGVYLVFVNGILAGI 334
              +P    VFVNG   G+
Sbjct: 176 PSRNPHATKVFVNGTWVGV 194



 Score = 90.5 bits (223), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 59/104 (56%), Gaps = 14/104 (13%)

Query: 723 PGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGC 782
           P V TH EI P  +LG+CA I              +P+P HNQ+PRN YQ AMGKQAMG 
Sbjct: 354 PHVYTHCEIHPSMILGICASI--------------IPFPDHNQSPRNCYQSAMGKQAMGV 399

Query: 783 IGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              N   R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 400 FLTNYDQRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 443


>gi|326475036|gb|EGD99045.1| DNA-dependent RNA polymerase II RPB140 [Trichophyton tonsurans CBS
            112818]
          Length = 1258

 Score =  215 bits (548), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 109/286 (38%), Positives = 169/286 (59%), Gaps = 3/286 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N + R++T+   L Y Q+P+  ++++    F
Sbjct: 787  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFEQRMETMANILYYPQKPLATTRSMEFLKF 846

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR      K       +R 
Sbjct: 847  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMIGLTVVERF 906

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAISMATPEYKE 1092
              P+     R     +  +D DGIV+PG ++    +++ K+ P       +   T ++ +
Sbjct: 907  EKPMRSDTLRMKHGTYDKVDDDGIVSPGVRVSGEDIIIGKTSPLAPEAEELGQRTKQHTK 966

Query: 1093 VPVS--YKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            + VS   + +    +++VLVS++++D   +K+ +R T+ P+IGDKF+SRHGQKG IG+  
Sbjct: 967  LDVSTPLRSTESGIVDQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITY 1026

Query: 1151 EQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSY 1196
              EDMPF   GI PD+I+NPH +     I    E  +S   S+  Y
Sbjct: 1027 RHEDMPFTREGITPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGY 1072



 Score =  180 bits (457), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 85/189 (44%), Positives = 119/189 (62%)

Query: 1184 EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVE 1243
            +V    + +    +++VLVS++++D   +K+ +R T+ P+IGDKF+SRHGQKG IG+   
Sbjct: 968  DVSTPLRSTESGIVDQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYR 1027

Query: 1244 QEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDV 1303
             EDMPF   GI PD+I+NPH  PSRMT+  LIE    K   + G   + T F    +  V
Sbjct: 1028 HEDMPFTREGITPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGYEGDATPFTDVTVDSV 1087

Query: 1304 QEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLT 1363
               L  HGY  +G ++ Y+G TG  L A ++ GP YYQ+L+HMV DKIHAR+RGP  +LT
Sbjct: 1088 SSLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHARARGPTQILT 1147

Query: 1364 RQPTGRRWK 1372
            RQP   R +
Sbjct: 1148 RQPVEGRAR 1156



 Score =  110 bits (274), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 56/144 (38%), Positives = 84/144 (58%), Gaps = 3/144 (2%)

Query: 192 MRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRK 250
           ++  T+T  L  A+ TGNW   ++    + GV+QVL+R +Y S L  + R N+   +  K
Sbjct: 470 VKASTLTGGLKYALATGNWGEQKKAASSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGK 529

Query: 251 VSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIA 310
           ++ PR L  + WG++CP++TPEG+ACGLVKNLALM  IT     + ++  M    +E + 
Sbjct: 530 IAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCCITVGTPSEPIIDFMIQRNMEVLE 589

Query: 311 MFNGEELSSPGVYLVFVNGILAGI 334
            F  E   SP    VFVNG+  G+
Sbjct: 590 EF--EPQVSPNSTKVFVNGVWVGV 611



 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/100 (42%), Positives = 59/100 (59%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 771 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 816

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
            + R++T+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 817 FEQRMETMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 856



 Score = 52.8 bits (125), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 44/78 (56%), Gaps = 2/78 (2%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMV-LALSDPDMLDDRDYYGNKRLELAG 514
           ARD +    + HI         KA +L  M+ R++  AL   D +DDRD++G KRL+LAG
Sbjct: 374 ARDIIQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRD-VDDRDHFGKKRLDLAG 432

Query: 515 SLLSLMFEDVFKRFNSEL 532
            LL+ +F  +F R   +L
Sbjct: 433 PLLANLFRVLFMRLTKDL 450


>gi|103001472|gb|ABF71509.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
            chlorophanum]
          Length = 686

 Score =  215 bits (548), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 107/264 (40%), Positives = 166/264 (62%), Gaps = 5/264 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 347  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDQRMDTMANILYYPQKPLATTRSMEFLKF 406

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR+     K+      ++ 
Sbjct: 407  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSVVEQF 466

Query: 1034 LGPLLEADTRKPVY-RHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAISMATPEY- 1090
              P + +DT K  +  +  LD DGIVAPG ++    +++ K+ P       +   T  + 
Sbjct: 467  EKP-MRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKLHV 525

Query: 1091 -KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             ++V    + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHGQKG IG+ 
Sbjct: 526  KRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGIT 585

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
              QEDMPF + GI PD+I+NPH +
Sbjct: 586  YRQEDMPFTKEGIVPDLIINPHAI 609



 Score =  145 bits (367), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 80/229 (34%), Positives = 126/229 (55%), Gaps = 13/229 (5%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESG-ICPDIIMNPHGL 1173
            ++ Q  +P   D    +HG        G++  G+ V  ED+   ++  I PD       L
Sbjct: 462  VVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPD----AEEL 517

Query: 1174 KGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
                ++   ++V    + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHG
Sbjct: 518  GQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHG 577

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGT 1293
            QKG IG+   QEDMPF + GI PD+I+NPH  PSRMT+  LIE    K   + G   + T
Sbjct: 578  QKGTIGITYRQEDMPFTKEGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDAT 637

Query: 1294 AFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQK 1342
             F    +  V + L  HGY  +G ++ Y+G TG+ L A ++ GP YYQ+
Sbjct: 638  PFTEVTVDSVSKLLREHGYQSRGFEVMYNGHTGQKLVAQVFLGPTYYQR 686



 Score =  114 bits (286), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 91/151 (60%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW   ++    + GV+QVL+R ++ S L  + R N+
Sbjct: 24  EFNLTLGVKSTTITNGLKYSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNT 83

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT     + +++ M  
Sbjct: 84  PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIEFMIQ 143

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
             +E +  +  E   SP    VFVNG+  G+
Sbjct: 144 RNMEVLEEY--EPQRSPNATKVFVNGVWVGV 172



 Score = 90.1 bits (222), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 331 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 376

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 377 YDQRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 416


>gi|103001984|gb|ABF71530.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
            gobiense]
          Length = 719

 Score =  215 bits (548), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 107/264 (40%), Positives = 166/264 (62%), Gaps = 5/264 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 369  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDQRMDTMANILYYPQKPLATTRSMEFLKF 428

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR+     K+      ++ 
Sbjct: 429  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSVVEQF 488

Query: 1034 LGPLLEADTRKPVY-RHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAISMATPEY- 1090
              P + +DT K  +  +  LD DGIVAPG ++    +++ K+ P       +   T  + 
Sbjct: 489  EKP-MRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKLHV 547

Query: 1091 -KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             ++V    + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHGQKG IG+ 
Sbjct: 548  KRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGIT 607

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
              QEDMPF + GI PD+I+NPH +
Sbjct: 608  YRQEDMPFTKEGIVPDLIINPHAI 631



 Score =  160 bits (404), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 87/238 (36%), Positives = 133/238 (55%), Gaps = 13/238 (5%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESG-ICPDIIMNPHGL 1173
            ++ Q  +P   D    +HG        G++  G+ V  ED+   ++  I PD       L
Sbjct: 484  VVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPD----AEEL 539

Query: 1174 KGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
                ++   ++V    + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHG
Sbjct: 540  GQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHG 599

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGT 1293
            QKG IG+   QEDMPF + GI PD+I+NPH  PSRMT+  LIE    K   + G   + T
Sbjct: 600  QKGTIGITYRQEDMPFTKEGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDAT 659

Query: 1294 AFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKI 1351
             F    +  V + L  HGY  +G ++ Y+G TG  L A ++ GP YYQ+L+HMV DKI
Sbjct: 660  PFTEVTVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKI 717



 Score =  114 bits (286), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 91/151 (60%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW   ++    + GV+QVL+R ++ S L  + R N+
Sbjct: 46  EFNLTLGVKSTTITNGLKYSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNT 105

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT     + +++ M  
Sbjct: 106 PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIEFMIQ 165

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
             +E +  +  E   SP    VFVNG+  G+
Sbjct: 166 RNMEVLEEY--EPQRSPNATKVFVNGVWVGV 194



 Score = 90.1 bits (222), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 353 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 398

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 399 YDQRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 438


>gi|103001602|gb|ABF71514.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
            flavum]
          Length = 694

 Score =  215 bits (548), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 108/265 (40%), Positives = 167/265 (63%), Gaps = 7/265 (2%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 350  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDQRMDTMANILYYPQKPLATTRSMEFLKF 409

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR+     K+      ++ 
Sbjct: 410  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSVVEQF 469

Query: 1034 LGPLLEADTRKPVY-RHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPE--- 1089
              P + +DT K  +  +  LD DGIVAPG ++    +++ K+ P IS  A  +       
Sbjct: 470  EKP-MRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAP-ISPDAEELGQRTKLH 527

Query: 1090 -YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
              ++V    + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHGQKG IG+
Sbjct: 528  VKRDVSTPLRSTENGIVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGI 587

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
               QEDMPF + G+ PD+I+NPH +
Sbjct: 588  TYRQEDMPFTKEGVVPDLIINPHAI 612



 Score =  153 bits (387), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 83/234 (35%), Positives = 130/234 (55%), Gaps = 13/234 (5%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESG-ICPDIIMNPHGL 1173
            ++ Q  +P   D    +HG        G++  G+ V  ED+   ++  I PD       L
Sbjct: 465  VVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPISPD----AEEL 520

Query: 1174 KGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
                ++   ++V    + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHG
Sbjct: 521  GQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHG 580

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGT 1293
            QKG IG+   QEDMPF + G+ PD+I+NPH  PSRMT+  LIE    K   + G   + T
Sbjct: 581  QKGTIGITYRQEDMPFTKEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDAT 640

Query: 1294 AFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMV 1347
             F    +  V + L  HGY  +G ++ Y+G TG  L A ++ GP YYQ+L+HMV
Sbjct: 641  PFTEVTVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMV 694



 Score =  114 bits (286), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 91/151 (60%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW   ++    + GV+QVL+R ++ S L  + R N+
Sbjct: 27  EFNLTLGVKSTTITNGLKYSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNT 86

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT     + +++ M  
Sbjct: 87  PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIEFMIQ 146

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
             +E +  +  E   SP    VFVNG+  G+
Sbjct: 147 RNMEVLEEY--EPQRSPNATKVFVNGVWVGV 175



 Score = 90.1 bits (222), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 334 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 379

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 380 YDQRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 419


>gi|58618681|gb|AAW80835.1| RNA polymerase II second largest subunit [Cotylidia sp. MB5]
          Length = 892

 Score =  215 bits (548), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 524  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKF 583

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 584  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSMYYRSYMDLEKKSGVQQLEEF 643

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  E   R     +  ++ DG++APG  +    +++ K+ P    S        T   
Sbjct: 644  EKPTRETTLRMKHGTYDKIEDDGLIAPGTGVSGEDIIIGKTAPIPPDSEELGQRTRTHTR 703

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NS+    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 704  RDVSTPLKSTENGIVDQVLITTNSDGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITY 763

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 764  RQEDMPFTAEGITPDIIINPHAI 786



 Score =  189 bits (481), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 90/188 (47%), Positives = 122/188 (64%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++NS+    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 704  RDVSTPLKSTENGIVDQVLITTNSDGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITY 763

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 764  RQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVES 823

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
            V   L + GY  +G ++ Y G TG  L+A +Y GP YYQ+LKHMV DKIH+R+RGP  +L
Sbjct: 824  VSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMVDDKIHSRARGPVQIL 883

Query: 1363 TRQPTGRR 1370
            TRQP   R
Sbjct: 884  TRQPVEGR 891



 Score =  112 bits (281), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 70/210 (33%), Positives = 113/210 (53%), Gaps = 12/210 (5%)

Query: 127 GLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQF 186
            L +P +D  D+F     KK +     + + +  + + K          K +   KA  F
Sbjct: 163 ALERPELDDRDHFG----KKRLDLAGPLLAGLFRMLFRKLTKDVYRYLQKCVEGHKA--F 216

Query: 187 DIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINSQF 245
           +I   ++ +TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+  
Sbjct: 217 NISLAVKHNTITNGLKYSLATGNWGDQKKSMTTKAGVSQVLNRYTYASTLSHLRRCNTPL 276

Query: 246 EKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIG 305
            +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM  I+  +    +++ +   G
Sbjct: 277 GREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMATISVGSLSAPVIEFLEEWG 336

Query: 306 IEHIAMFNGEELSSP-GVYLVFVNGILAGI 334
           +E +     E   SP  +  VFVNG+  G+
Sbjct: 337 LESLE----ENAHSPIPLTKVFVNGVWMGV 362



 Score = 88.6 bits (218), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 76/165 (46%), Gaps = 43/165 (26%)

Query: 691 RFDDFLYEGKIEYLDVNEGNDSHIAVS----------ESGIRPGVT-------------- 726
           ++D  +  G IEYLD  E     I ++          + GI P                 
Sbjct: 443 KWDSLVKGGVIEYLDAEEEETVMICMTPEDLENSRLQQQGIDPHANDGDFDPAARLKSVQ 502

Query: 727 -----THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMG 781
                TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG
Sbjct: 503 NAHTWTHCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMG 548

Query: 782 CIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
               N   R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 549 IYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAI 593



 Score = 56.2 bits (134), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 45/77 (58%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A++ L    + H+ +       KA +   MI R++LA  +   LDDRD++G KRL+LAG 
Sbjct: 126 AQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAALERPELDDRDHFGKKRLDLAGP 185

Query: 516 LLSLMFEDVFKRFNSEL 532
           LL+ +F  +F++   ++
Sbjct: 186 LLAGLFRMLFRKLTKDV 202


>gi|300394706|gb|ADK11891.1| DNA-directed RNA polymerase II subunit two, partial [Gyrodon lividus]
          Length = 690

 Score =  215 bits (548), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 105/263 (39%), Positives = 162/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 350  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKF 409

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 410  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEF 469

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  ++  R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 470  ERPTRDSTLRMKHGTYDKLEDDGLIAPGTNVRGEDIIIGKTAPIPPDSEELGQRTRTHTR 529

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 530  RDVSTPLKSTENGIVDQVLITTNSEGQKFVKIRVRSTRVPQIGDKFASRHGQKGTIGITY 589

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PD+++NPH +
Sbjct: 590  RQEDMPFTAEGIVPDLVINPHAI 612



 Score =  153 bits (386), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 84/228 (36%), Positives = 123/228 (53%), Gaps = 11/228 (4%)

Query: 1124 LRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESGICPDIIMNPHGLKG 1175
            L +  RP        +HG        G+I  G  V  ED+   ++   P    +   L  
Sbjct: 466  LEEFERPTRDSTLRMKHGTYDKLEDDGLIAPGTNVRGEDIIIGKTAPIPP---DSEELGQ 522

Query: 1176 CDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1235
              R    ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQK
Sbjct: 523  RTRTHTRRDVSTPLKSTENGIVDQVLITTNSEGQKFVKIRVRSTRVPQIGDKFASRHGQK 582

Query: 1236 GVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAF 1295
            G IG+   QEDMPF   GI PD+++NPH  PSRMT+G L+E L  K   + GN  + T F
Sbjct: 583  GTIGITYRQEDMPFTAEGIVPDLVINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPF 642

Query: 1296 GGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKL 1343
                +  V   L + GY  +G ++ Y G TG+ ++A +Y GP YYQ+L
Sbjct: 643  TDLTVESVSTFLRQKGYQSRGLEVMYHGHTGKKIQAQVYLGPTYYQRL 690



 Score =  111 bits (278), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 93/151 (61%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKM-ERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 43  EFNLSLAVKHQTITNGLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNT 102

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM+ I+  +    +++ +  
Sbjct: 103 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSYSAPVIEFLEE 162

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E  ++      S+P    VFVNG+  G+
Sbjct: 163 WGLE--SLEENAHSSTPCTK-VFVNGVWMGV 190



 Score = 92.0 bits (227), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/176 (34%), Positives = 89/176 (50%), Gaps = 22/176 (12%)

Query: 707 NEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQA 766
           N+G+    A  ++GI     TH EI P  +LGVCA I              +P+P HNQ+
Sbjct: 314 NDGDFDPAARLKAGISAHTWTHCEIHPSMILGVCASI--------------IPFPDHNQS 359

Query: 767 PRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
           PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 360 PRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAI 419

Query: 827 SPGGAEELTARESCHEVLKIISFSISVAVFDSVWLG-----DVKQGVHQLSEEKEP 877
               A    +  +  + + +   SI   +F S++       + K GV QL E + P
Sbjct: 420 V---AILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFERP 472


>gi|300394704|gb|ADK11890.1| DNA-directed RNA polymerase II subunit two, partial [Coniophora
            prasinoides]
          Length = 352

 Score =  215 bits (548), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 18   IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKF 77

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 78   RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEF 137

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  ++ DG++APG  +    +++ K+ P    S        T   
Sbjct: 138  EKPTRDTTLRMKHGTYDKIEDDGLIAPGTGVSGEDIIIGKTAPIPPDSEELGQRTRTHTR 197

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 198  RDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITY 257

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 258  RQEDMPFTAEGIVPDIIINPHAI 280



 Score =  140 bits (354), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 69/155 (44%), Positives = 95/155 (61%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 198  RDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITY 257

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 258  RQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVES 317

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGP 1337
            V   L + GY  +G ++ Y G TG  L+A IY  P
Sbjct: 318  VSTFLRQKGYQSRGLEVMYHGHTGRKLQAQIYLVP 352



 Score = 86.7 bits (213), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 81/156 (51%), Gaps = 22/156 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 2   THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYLTN 47

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQISPGGAEELTARESCHEVLKI 846
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I    A    +  +  + + +
Sbjct: 48  FLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIV---AILCYSGYNQEDSVIM 104

Query: 847 ISFSISVAVFDSVWLG-----DVKQGVHQLSEEKEP 877
              SI   +F S++       + K G+ QL E ++P
Sbjct: 105 NQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEFEKP 140


>gi|68131824|gb|AAY85190.1| RNA polymerase II second largest subunit [Aextoxicon punctatum]
          Length = 873

 Score =  215 bits (548), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 110/270 (40%), Positives = 167/270 (61%), Gaps = 19/270 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 613  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHF 672

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L +R+ +           ++ 
Sbjct: 673  RQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR---------DEEKK 723

Query: 1034 LGPLLEADTRKPV------YRHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            +G L++ D  +P        RH +   LD DG+  PG ++    V++ K+ P     A  
Sbjct: 724  MGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDAQG 783

Query: 1085 MATP-EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1143
             A+    ++   S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQK
Sbjct: 784  QASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQK 843

Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G +G+   QEDMP+   GI PDII+NPH +
Sbjct: 844  GTVGMTYTQEDMPWTVEGITPDIIVNPHAI 873



 Score =  113 bits (283), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 61/146 (41%), Positives = 86/146 (58%), Gaps = 8/146 (5%)

Query: 192 MRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKV 251
           ++  TIT+ L  ++ TGNW        R GV+QVL+RL+Y S L  + R+NS   +  K+
Sbjct: 335 IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKL 394

Query: 252 SGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAM 311
           + PR L  S W M+CP++TPEG+ACGLVKNLALM +IT  +    +L+ +     E  + 
Sbjct: 395 AKPRQLHNSHWXMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFL-----EEWST 449

Query: 312 FNGEELSS---PGVYLVFVNGILAGI 334
            N EE+S    P    +FVNG   GI
Sbjct: 450 ENFEEISPAVIPQATKIFVNGCWVGI 475



 Score = 99.8 bits (247), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/141 (39%), Positives = 77/141 (54%), Gaps = 24/141 (17%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPG----------VTTHLEIAPFTLLGVCA 741
           + D + +G IEY+D  E   + I+++ + +               TH EI P  +LGVCA
Sbjct: 552 WHDLVAKGFIEYVDTEEEETTMISMTINDLITARLNPEEAYSETYTHCEIHPSLILGVCA 611

Query: 742 GIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYA 801
            I              +P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y 
Sbjct: 612 SI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYP 657

Query: 802 QRPMVESKTIRITNFHKLPAG 822
           Q+P+V ++ +   +F +LPAG
Sbjct: 658 QKPLVTTRAMEHLHFRQLPAG 678



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 37/78 (47%), Positives = 54/78 (69%)

Query: 1187 VSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQED 1246
             S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   QED
Sbjct: 795  TSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 854

Query: 1247 MPFNESGICPDIIMNPHG 1264
            MP+   GI PDII+NPH 
Sbjct: 855  MPWTVEGITPDIIVNPHA 872



 Score = 54.3 bits (129), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 14/114 (12%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A++ L    + H+ V       KA Y   +I R++L        DDRD+YGNKRL+LAG 
Sbjct: 239 AKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP 298

Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYGN 555
           LL  +F  +F++   ++           K+ NL   +    + SG  + L  GN
Sbjct: 299 LLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGN 352



 Score = 43.1 bits (100), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 19/68 (27%)

Query: 358 PHECRLRDLTYSAPITVDIEYTRGSQRVVR--------------SDLVIGRMPIMLQSSK 403
           P   RLR+LTYSAP+ VD+     ++RV++              + + IG++PIML+SS 
Sbjct: 7   PKAARLRNLTYSAPLYVDV-----TKRVIKKGHDCEEVTETQDFTKVFIGKVPIMLRSSY 61

Query: 404 CVLRNKTE 411
           C +   +E
Sbjct: 62  CTVYQNSE 69


>gi|320172584|gb|ADW24175.1| RNA polymerase II second largest subunit [Gloeophyllum protractum]
          Length = 350

 Score =  215 bits (548), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 107/263 (40%), Positives = 164/263 (62%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 18   IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLRF 77

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 78   RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEF 137

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS-AISMATPEY-- 1090
              P  +   R     +  L+ DG++APG  +    +++ K+ P    S  +   T  +  
Sbjct: 138  EKPTRDTTLRMKHGTYDKLEDDGLIAPGTGVNGEDIIIGKTAPIPPDSEELGQRTRLHTR 197

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V  + K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 198  RDVSTALKSTESGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITY 257

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 258  RQEDMPFTAEGITPDIIINPHAI 280



 Score =  142 bits (358), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 69/157 (43%), Positives = 97/157 (61%)

Query: 1178 RITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV 1237
            R+   ++V  + K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG 
Sbjct: 193  RLHTRRDVSTALKSTESGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGT 252

Query: 1238 IGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGG 1297
            IG+   QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F  
Sbjct: 253  IGITYRQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTD 312

Query: 1298 TKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIY 1334
              +  V   L + GY  +G ++ Y G TG  L+A IY
Sbjct: 313  LTVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQIY 349



 Score = 87.4 bits (215), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 56/156 (35%), Positives = 81/156 (51%), Gaps = 22/156 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LGVCA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 2   THCEIHPSMILGVCASI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYLTN 47

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQISPGGAEELTARESCHEVLKI 846
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I    A    +  +  + + +
Sbjct: 48  FLVRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNAIV---AILCYSGYNQEDSVIM 104

Query: 847 ISFSISVAVFDSVWLG-----DVKQGVHQLSEEKEP 877
              SI   +F S++       + K GV QL E ++P
Sbjct: 105 NQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKP 140


>gi|326484701|gb|EGE08711.1| DNA-dependent RNA polymerase II RPB140 [Trichophyton equinum CBS
            127.97]
          Length = 1258

 Score =  215 bits (548), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 109/286 (38%), Positives = 169/286 (59%), Gaps = 3/286 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N + R++T+   L Y Q+P+  ++++    F
Sbjct: 787  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFEQRMETMANILYYPQKPLATTRSMEFLKF 846

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR      K       +R 
Sbjct: 847  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMIGLTVVERF 906

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAISMATPEYKE 1092
              P+     R     +  +D DGIV+PG ++    +++ K+ P       +   T ++ +
Sbjct: 907  EKPMRSDTLRMKHGTYDKVDDDGIVSPGVRVSGEDIIIGKTSPLAPEAEELGQRTKQHTK 966

Query: 1093 VPVS--YKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            + VS   + +    +++VLVS++++D   +K+ +R T+ P+IGDKF+SRHGQKG IG+  
Sbjct: 967  LDVSTPLRSTESGIVDQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITY 1026

Query: 1151 EQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSY 1196
              EDMPF   GI PD+I+NPH +     I    E  +S   S+  Y
Sbjct: 1027 RHEDMPFTREGITPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGY 1072



 Score =  180 bits (457), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 85/189 (44%), Positives = 119/189 (62%)

Query: 1184 EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVE 1243
            +V    + +    +++VLVS++++D   +K+ +R T+ P+IGDKF+SRHGQKG IG+   
Sbjct: 968  DVSTPLRSTESGIVDQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYR 1027

Query: 1244 QEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDV 1303
             EDMPF   GI PD+I+NPH  PSRMT+  LIE    K   + G   + T F    +  V
Sbjct: 1028 HEDMPFTREGITPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGYEGDATPFTDVTVDSV 1087

Query: 1304 QEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLT 1363
               L  HGY  +G ++ Y+G TG  L A ++ GP YYQ+L+HMV DKIHAR+RGP  +LT
Sbjct: 1088 SSLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHARARGPTQILT 1147

Query: 1364 RQPTGRRWK 1372
            RQP   R +
Sbjct: 1148 RQPVEGRAR 1156



 Score =  109 bits (273), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 56/144 (38%), Positives = 84/144 (58%), Gaps = 3/144 (2%)

Query: 192 MRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRK 250
           ++  T+T  L  A+ TGNW   ++    + GV+QVL+R +Y S L  + R N+   +  K
Sbjct: 470 VKASTLTGGLKYALATGNWGEQKKAASSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGK 529

Query: 251 VSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIA 310
           ++ PR L  + WG++CP++TPEG+ACGLVKNLALM  IT     + ++  M    +E + 
Sbjct: 530 IAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCCITVGTPSEPIIDFMIQRNMEVLE 589

Query: 311 MFNGEELSSPGVYLVFVNGILAGI 334
            F  E   SP    VFVNG+  G+
Sbjct: 590 EF--EPQVSPNSTKVFVNGVWVGV 611



 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/100 (42%), Positives = 59/100 (59%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 771 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 816

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
            + R++T+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 817 FEQRMETMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 856



 Score = 52.8 bits (125), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 44/78 (56%), Gaps = 2/78 (2%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMV-LALSDPDMLDDRDYYGNKRLELAG 514
           ARD +    + HI         KA +L  M+ R++  AL   D +DDRD++G KRL+LAG
Sbjct: 374 ARDIIQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRD-VDDRDHFGKKRLDLAG 432

Query: 515 SLLSLMFEDVFKRFNSEL 532
            LL+ +F  +F R   +L
Sbjct: 433 PLLANLFRVLFMRLTKDL 450


>gi|93278297|gb|ABF06604.1| RNA polymerase II second largest subunit, partial [Conocybe apala]
          Length = 629

 Score =  215 bits (548), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 349  IIPFPDHNQSPRNTYQSAMGKQAMGIFLTNFLVRMDTMANILYYPQKPLATTRSMEYLKF 408

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 409  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRXIYYRSYMDLEKKSGIQQLEEF 468

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  E   R     +  ++ DG++APG  +    +++ K+ P    S        T   
Sbjct: 469  EKPTRETTLRMKHGTYDKIEDDGLIAPGTGVRGEDIIIGKTAPIPPDSEELGQRTRTHTR 528

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 529  RDVSTPLKSTESGIVDQVLITTNSEGHKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITY 588

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PD+I+NPH +
Sbjct: 589  RQEDMPFTNEGIVPDLIINPHAI 611



 Score =  115 bits (287), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 58/151 (38%), Positives = 92/151 (60%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F+I   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 43  EFNISLAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT 102

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM++I+  +    +++ +  
Sbjct: 103 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSYISVGSTSATVIEFLQE 162

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E +        S+     VFVNG+  GI
Sbjct: 163 WGLESL---EDNAHSNVPCTKVFVNGVWMGI 190



 Score =  113 bits (283), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 50/101 (49%), Positives = 69/101 (68%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 529  RDVSTPLKSTESGIVDQVLITTNSEGHKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITY 588

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAG 1283
             QEDMPF   GI PD+I+NPH  PSRMT+G L+E L  K  
Sbjct: 589  RQEDMPFTNEGIVPDLIINPHAIPSRMTIGHLVECLLSKVA 629



 Score = 86.7 bits (213), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 333 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGIFLTN 378

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 379 FLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAI 418


>gi|2736121|gb|AAB94061.1| RPB140 [Magnolia virginiana]
          Length = 555

 Score =  215 bits (548), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 110/271 (40%), Positives = 169/271 (62%), Gaps = 21/271 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 208  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHF 267

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L +R+ +           ++ 
Sbjct: 268  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR---------DEEKK 318

Query: 1034 LGPLLEADTRKPV------YRHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            +G L++ D  +P        RH +   LD DG+  PG ++    V++ K++P I+   + 
Sbjct: 319  MGTLVKEDFGRPNRESTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTIP-IAQDDVQ 377

Query: 1085 MATPEY--KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQ 1142
                 Y  ++   S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQ
Sbjct: 378  GQVTRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQ 437

Query: 1143 KGVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            KG +G+   QEDMP+   GI PDII+NPH +
Sbjct: 438  KGTVGMTYTQEDMPWTPEGITPDIIVNPHAI 468



 Score =  162 bits (409), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 78/177 (44%), Positives = 113/177 (63%), Gaps = 2/177 (1%)

Query: 1178 RITEY--KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1235
            ++T Y  ++   S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQK
Sbjct: 379  QVTRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQK 438

Query: 1236 GVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAF 1295
            G +G+   QEDMP+   GI PDII+NPH  PSRMT+G+LIE + GK     G   + T F
Sbjct: 439  GTVGMTYTQEDMPWTPEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPF 498

Query: 1296 GGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIH 1352
                + ++ + L + GY  +G +  Y+G TG  L A I+ GP YYQ+LKHMV DKIH
Sbjct: 499  TDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLPAMIFLGPTYYQRLKHMVDDKIH 555



 Score = 99.4 bits (246), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/141 (39%), Positives = 77/141 (54%), Gaps = 24/141 (17%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPG----------VTTHLEIAPFTLLGVCA 741
           + D + +G IEY+D  E   + I+++ S +               TH EI P  +LGVCA
Sbjct: 147 WHDLVAKGFIEYVDPEEEETTMISMTISDLISARHNPEEAYSETYTHCEIHPSLILGVCA 206

Query: 742 GIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYA 801
            I              +P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y 
Sbjct: 207 SI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYP 252

Query: 802 QRPMVESKTIRITNFHKLPAG 822
           Q+P+V ++ +   +F +LPAG
Sbjct: 253 QKPLVTTRAMEHLHFRQLPAG 273



 Score = 68.9 bits (167), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/76 (46%), Positives = 48/76 (63%), Gaps = 8/76 (10%)

Query: 262 WGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMFNGEELSS-- 319
           WGM+CP++TPEG+ACGLVKNLALM +IT  +    +L+ +     E  +  N EE+S+  
Sbjct: 1   WGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFL-----EEWSTENFEEISAAV 55

Query: 320 -PGVYLVFVNGILAGI 334
            P    +FVNG   GI
Sbjct: 56  IPQATKIFVNGCWVGI 71


>gi|55140711|gb|AAQ01544.3| RNA polymerase II second largest subunit [Phaeomarasmius proximans]
          Length = 687

 Score =  215 bits (548), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 107/263 (40%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 345  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKF 404

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 405  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEF 464

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  E   R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 465  EKPTRENTLRLKHGTYDKLEDDGLIAPGTGVRGEDIIIGKTAPIPPDSEELGQRTRTHTR 524

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 525  RDVSTPLKSTESGIVDQVLLTTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITY 584

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PD+I+NPH +
Sbjct: 585  RQEDMPFTSEGIVPDLIINPHAI 607



 Score =  157 bits (398), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 74/163 (45%), Positives = 103/163 (63%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 525  RDVSTPLKSTESGIVDQVLLTTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITY 584

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PD+I+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 585  RQEDMPFTSEGIVPDLIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVES 644

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKH 1345
            V   L + GY  +G ++ Y G TG  L+A +Y GP YYQ+LKH
Sbjct: 645  VSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKH 687



 Score =  110 bits (276), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 90/151 (59%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 39  EFNLALAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT 98

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM+ I+       +++ +  
Sbjct: 99  PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGTISAPVIEFLEE 158

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E +        S+     VFVNG+  G+
Sbjct: 159 WGLESL---EENAHSTTPFTKVFVNGVWIGV 186



 Score = 90.9 bits (224), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 60/177 (33%), Positives = 89/177 (50%), Gaps = 22/177 (12%)

Query: 706 VNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQ 765
           VN+G     A  ++G      TH EI P  +LG+CA I              +P+P HNQ
Sbjct: 308 VNDGEYDPAARLKAGTHAHTWTHCEIHPSMILGICASI--------------IPFPDHNQ 353

Query: 766 APRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQ 825
           +PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  
Sbjct: 354 SPRNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNA 413

Query: 826 ISPGGAEELTARESCHEVLKIISFSISVAVFDSVWLG-----DVKQGVHQLSEEKEP 877
           I    A    +  +  + + +   SI   +F S++       + K GV QL E ++P
Sbjct: 414 IV---AILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKP 467


>gi|402294653|gb|AFQ55280.1| DNA-directed RNA polymerase II [Peltigera malacea]
          Length = 1255

 Score =  215 bits (548), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 107/266 (40%), Positives = 161/266 (60%), Gaps = 9/266 (3%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+PM  ++++    F
Sbjct: 784  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDQRMDTMANILYYPQKPMATTRSMEFLKF 843

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR+     K+      ++ 
Sbjct: 844  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSIVEQF 903

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKEV 1093
              P+     R     +  LD DGIVAPG ++    +++ K+ P   +   S    +  ++
Sbjct: 904  EKPMRTDTLRLKHGTYEKLDDDGIVAPGVRVSGEDMIIGKTAP---IPPDSEELGQRTKL 960

Query: 1094 PVSYKGSVP------SYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
             V    S P        +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHGQKG IG
Sbjct: 961  HVKRDASTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIG 1020

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            +   QEDMPF   G+ PD+I+NPH +
Sbjct: 1021 ITYRQEDMPFTSEGVVPDLIINPHAI 1046



 Score =  179 bits (453), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 95/258 (36%), Positives = 144/258 (55%), Gaps = 11/258 (4%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESGICPDIIMNPHGLK 1174
            ++ Q  +P   D    +HG        G++  G+ V  EDM   ++   P    +   L 
Sbjct: 899  IVEQFEKPMRTDTLRLKHGTYEKLDDDGIVAPGVRVSGEDMIIGKTAPIPP---DSEELG 955

Query: 1175 GCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQ 1234
               ++   ++     + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHGQ
Sbjct: 956  QRTKLHVKRDASTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQ 1015

Query: 1235 KGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTA 1294
            KG IG+   QEDMPF   G+ PD+I+NPH  PSRMT+  LIE    K   + G   + T 
Sbjct: 1016 KGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSALRGFEGDATP 1075

Query: 1295 FGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHAR 1354
            F    +  V + L  HGY  +G ++ Y+  TG  L A ++ GP YYQ+L+HMV DKIHAR
Sbjct: 1076 FTEVTVDSVSKILRAHGYQSRGFEVMYNAHTGLKLVAQVFLGPTYYQRLRHMVDDKIHAR 1135

Query: 1355 SRGPRVVLTRQPTGRRWK 1372
            +RGP  +LTRQP   R +
Sbjct: 1136 ARGPVQILTRQPVEGRAR 1153



 Score =  114 bits (286), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 91/151 (60%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  T+TN L  ++ TGNW   ++    + GV+QVL+R ++ S L  + R N+
Sbjct: 460 EFNLTLGVKSTTLTNGLKYSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNT 519

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT     + ++  M  
Sbjct: 520 PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPCEPIIDFMNQ 579

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
             +E +  +  E L SP    VFVNG+  G+
Sbjct: 580 RNMEMLEEY--EPLRSPNATKVFVNGVWVGV 608



 Score = 92.0 bits (227), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/100 (44%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 768 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 813

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+PM  ++++    F +LPAG+  I
Sbjct: 814 YDQRMDTMANILYYPQKPMATTRSMEFLKFRELPAGQNAI 853



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 56/114 (49%), Gaps = 14/114 (12%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           ARD +    + HI   +     KA +L  M+ RM+        +DDRD++G KRL+LAG 
Sbjct: 371 ARDIMQKELLPHISQTDGSETKKAFFLGYMVHRMLQCALGRREVDDRDHFGKKRLDLAGP 430

Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLS-GV--VNLVSGWWFELKYGN 555
           LL+ +F  +F +   ++           +E NL+ GV    L +G  + L  GN
Sbjct: 431 LLAGLFRMLFNKLTKDVFKYLQKCVENNREFNLTLGVKSTTLTNGLKYSLATGN 484


>gi|357216659|gb|AET71063.1| RNA polymerase II second largest subunit, partial [Datronia mollis]
          Length = 656

 Score =  215 bits (548), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 346  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLRF 405

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 406  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEF 465

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 466  EKPTRDTTLRMKHGTYDKLENDGLIAPGTNVNGEDIIIGKTAPIPPDSEELGQRTRTHTK 525

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++N+E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 526  RDVSTPLKSTEQGIVDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 585

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 586  RQEDMPFTAEGITPDIIINPHAI 608



 Score =  122 bits (307), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 58/130 (44%), Positives = 81/130 (62%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++N+E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 526  RDVSTPLKSTEQGIVDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 585

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 586  RQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLSKLATLIGNEGDATPFTNLTVET 645

Query: 1303 VQEELIRHGY 1312
            V   L + GY
Sbjct: 646  VSTFLRQKGY 655



 Score =  108 bits (271), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 56/155 (36%), Positives = 95/155 (61%), Gaps = 8/155 (5%)

Query: 183 AAQFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRI 241
           + +F++   ++ +TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R 
Sbjct: 38  SKEFNLSLAVKHNTITNGLKYSLATGNWGDQKKSMSAKAGVSQVLNRYTYASTLSHLRRC 97

Query: 242 NSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIM 301
           N+   +  K++ PR L  + WGM+CP++TPEG+ACGLVKNL+LM+ I+  +    +++ +
Sbjct: 98  NTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSCISVGSLSAPVIEFL 157

Query: 302 YNIGIEHIAMFNGEELSSPGV--YLVFVNGILAGI 334
              G+E +     EE +   +    VFVNG+  G+
Sbjct: 158 EEWGLESL-----EENAHATIPCTKVFVNGVWMGV 187



 Score = 88.6 bits (218), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/164 (34%), Positives = 76/164 (46%), Gaps = 43/164 (26%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVS----------ESGIRPGVT--------------- 726
           +D+ + EG IE LD  E     I ++           +GI P                  
Sbjct: 266 WDNLIKEGVIELLDAEEEETVMICMTPEDLENSRLQAAGIDPHADDENNDPSARLKAPTF 325

Query: 727 ----THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGC 782
               TH EI P  +LGVCA I              +P+P HNQ+PRNTYQ AMGKQAMG 
Sbjct: 326 AHTWTHCEIHPSMILGVCASI--------------IPFPDHNQSPRNTYQSAMGKQAMGI 371

Query: 783 IGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              N   R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 372 YLTNFLVRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNAI 415


>gi|300394742|gb|ADK11909.1| DNA-directed RNA polymerase II subunit two, partial [Podoserpula
            pusio]
          Length = 359

 Score =  215 bits (548), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 107/263 (40%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 18   IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMLYLKF 77

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 78   RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEF 137

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  E   R     +  ++ DG++APG  +    +++ K+ P    S        T   
Sbjct: 138  EKPTRENTLRMKHGTYDKIEDDGLIAPGTGVAGEDIIIGKTAPIPPDSEELGQRTRTHTR 197

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 198  RDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTRVPQIGDKFASRHGQKGTIGITY 257

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 258  RQEDMPFTAEGIVPDIIINPHAI 280



 Score =  146 bits (368), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 70/160 (43%), Positives = 99/160 (61%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 198  RDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTRVPQIGDKFASRHGQKGTIGITY 257

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 258  RQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVES 317

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQK 1342
            V + L + GY  +  ++ Y G TG  L+A +  GP YYQ+
Sbjct: 318  VSKFLRQKGYQSRALEVMYKGHTGRRLQAQLPLGPTYYQR 357



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 81/156 (51%), Gaps = 22/156 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 2   THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYLTN 47

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQISPGGAEELTARESCHEVLKI 846
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I    A    +  +  + + +
Sbjct: 48  FLIRMDTMANILYYPQKPLATTRSMLYLKFRELPAGQNAIV---AILCYSGYNQEDSVIM 104

Query: 847 ISFSISVAVFDSVWLG-----DVKQGVHQLSEEKEP 877
              SI   +F S++       + K G+ QL E ++P
Sbjct: 105 NQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEFEKP 140


>gi|99866478|gb|ABF67584.1| RNA polymerase II second largest subunit, partial [Auricularia
            auricula-judae]
          Length = 690

 Score =  215 bits (548), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 105/263 (39%), Positives = 160/263 (60%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R DT+   L Y Q+P+  ++++    F
Sbjct: 346  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFQVRQDTMANILYYPQKPLATTRSMEYLKF 405

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   V K+      +  
Sbjct: 406  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDVEKKSGMVALEEF 465

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  L+ DG++APG  +    +++ K+ P    S        T + 
Sbjct: 466  EKPSRDTTLRMKHGTYDKLEDDGLIAPGTGVAGEDIIIGKTAPLPQDSEELGQRTRTHQK 525

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++N +    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 526  RDVSTPLKSTENGIVDQVLITTNQDGQKFVKIRIRSTRVPQIGDKFASRHGQKGTIGITY 585

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDI++NPH +
Sbjct: 586  RQEDMPFTAEGITPDIVINPHAI 608



 Score =  162 bits (410), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 75/170 (44%), Positives = 107/170 (62%)

Query: 1178 RITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV 1237
            R  + ++V    K +    +++VL+++N +    +K+ +R TR P+IGDKF+SRHGQKG 
Sbjct: 521  RTHQKRDVSTPLKSTENGIVDQVLITTNQDGQKFVKIRIRSTRVPQIGDKFASRHGQKGT 580

Query: 1238 IGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGG 1297
            IG+   QEDMPF   GI PDI++NPH  PSRMT+G L+E L  K   + GN  + T F  
Sbjct: 581  IGITYRQEDMPFTAEGITPDIVINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTD 640

Query: 1298 TKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMV 1347
              +  V + L   GY+ +G ++ Y G TG  L+A +Y GP YYQ+LKHMV
Sbjct: 641  LTVESVSQVLRSSGYHSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMV 690



 Score =  110 bits (274), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 57/152 (37%), Positives = 93/152 (61%), Gaps = 8/152 (5%)

Query: 186 FDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINSQ 244
           F++   ++ +TITN L  ++ TGNW  ++  M  + GV+QVL+R ++ S L  + R N+ 
Sbjct: 41  FNLNLAVKANTITNGLKYSLATGNWGDQKKSMSAKAGVSQVLNRYTFASTLSHLRRTNTP 100

Query: 245 FEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNI 304
             +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM  I+  +    +++ +   
Sbjct: 101 LGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMACISVGSLSAPVIEFLEEW 160

Query: 305 GIEHIAMFNGEELSSPGV--YLVFVNGILAGI 334
           G+E +     EE +  G+    VFVNG+  G+
Sbjct: 161 GLESL-----EENAHSGIPSTKVFVNGVWMGV 187



 Score = 87.8 bits (216), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 44/100 (44%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 330 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYLTN 375

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
            Q R DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 376 FQVRQDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAI 415


>gi|120561259|gb|ABM27014.1| RNA polymerase II second largest subunit, partial [Allomyces
            macrogynus]
          Length = 867

 Score =  215 bits (548), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 108/282 (38%), Positives = 172/282 (60%), Gaps = 2/282 (0%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL   L Y Q+P+V +++++   F
Sbjct: 529  IIPFPDHNQSPRNTYQSAMGKQAMGLYLTNFQLRMDTLANILYYPQKPLVATRSMKYLRF 588

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R + YR      K+      +  
Sbjct: 589  RELPAGQNAVVAIAVYSGYNQEDSIIMNQSSIDRGLFRSIYYRAYMDQEKKSGFSDVETF 648

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKS--MPTISVSAISMATPEYK 1091
              P  E   +     +  +++DG+VAPG ++    +++ K+  +P  +    +  T   K
Sbjct: 649  EKPTRETTLKLRHGSYDKIEEDGLVAPGTRVTGDDIIIGKTAPLPPDTSEMGARTTQTKK 708

Query: 1092 EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVE 1151
            +V  S K +    ++ V++++N++    +K+ +R TR P++GDKF+SRHGQKG +G+   
Sbjct: 709  DVSTSLKSTEQGIVDHVMLTTNNDGYKFVKVRVRSTRVPQMGDKFASRHGQKGTVGMTYR 768

Query: 1152 QEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSV 1193
            QEDMPF+  G+ PD+I+NPH +     I    E  +S  GS+
Sbjct: 769  QEDMPFSADGVTPDLIVNPHAIPSRMTIGHLVECLLSKVGSL 810



 Score =  148 bits (373), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 66/160 (41%), Positives = 103/160 (64%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            K+V  S K +    ++ V++++N++    +K+ +R TR P++GDKF+SRHGQKG +G+  
Sbjct: 708  KDVSTSLKSTEQGIVDHVMLTTNNDGYKFVKVRVRSTRVPQMGDKFASRHGQKGTVGMTY 767

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF+  G+ PD+I+NPH  PSRMT+G L+E L  K G + G   + T F    + +
Sbjct: 768  RQEDMPFSADGVTPDLIVNPHAIPSRMTIGHLVECLLSKVGSLTGTEGDATPFTDITVQE 827

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQK 1342
            + + L   GY  +G +I Y+G TG+ L A ++ GP YYQ+
Sbjct: 828  IADRLRSCGYQQRGFEIMYNGHTGKKLAAQVFFGPTYYQR 867



 Score =  114 bits (284), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 61/157 (38%), Positives = 95/157 (60%), Gaps = 9/157 (5%)

Query: 182 KAAQFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTR 240
           +  +F++   +  +TITN L  A+ TGNW  ++  ME R GV+QVL+R ++ S L  + R
Sbjct: 226 RGREFNLNMAINSNTITNGLRYALATGNWGDQKKFMETRAGVSQVLNRYTFASTLSHLRR 285

Query: 241 INSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKI 300
           +N+   +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM +I+  +    +L+ 
Sbjct: 286 LNTPIGREGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMAYISVGSASGPILEF 345

Query: 301 MYNIGIEHIAMFNGEELSSPGV---YLVFVNGILAGI 334
           +     E     N EE+++  +     VFVNG   GI
Sbjct: 346 L-----EEWTTENLEEITASAIGSNTKVFVNGSWVGI 377



 Score = 92.4 bits (228), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/190 (32%), Positives = 88/190 (46%), Gaps = 54/190 (28%)

Query: 677 RPTFL-NMHQFLGFKR------------FDDFLYEGKIEYLDVNEGNDSHIAVS------ 717
           RP F+ N  Q L  +R            ++D L  G +EYLD  E   + I ++      
Sbjct: 423 RPLFIVNEQQQLVLRRDHVARLEVGEWGWEDLLANGIVEYLDTEEEETTMICMTPDDLAE 482

Query: 718 ---------------------ESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPG 756
                                ++G      +H EI P  +LG+CA I             
Sbjct: 483 SRGDPIPDKSKLDKTARLKSRKAGDVCKQWSHCEIHPSMILGICASI------------- 529

Query: 757 LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 816
            +P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL   L Y Q+P+V +++++   F
Sbjct: 530 -IPFPDHNQSPRNTYQSAMGKQAMGLYLTNFQLRMDTLANILYYPQKPLVATRSMKYLRF 588

Query: 817 HKLPAGKCQI 826
            +LPAG+  +
Sbjct: 589 RELPAGQNAV 598



 Score = 56.2 bits (134), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 14/114 (12%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A D L    + HI +       K+ ++  M+ R++LA      +DDRD++G KRL+LAG 
Sbjct: 140 AHDLLERELLPHIGITPGCQTRKSYFIGYMVHRLLLAALGRRQVDDRDHFGKKRLDLAGP 199

Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLSGVVN---LVSGWWFELKYGN 555
           LL+ +F   F++   ++           +E NL+  +N   + +G  + L  GN
Sbjct: 200 LLASLFRTFFQKLTKDVSRYFTVCIERGREFNLNMAINSNTITNGLRYALATGN 253


>gi|94410934|gb|ABF18585.1| RNA polymerase II second largest subunit, partial [Hygrophorus
            pudorinus]
          Length = 691

 Score =  215 bits (548), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 107/263 (40%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 347  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKF 406

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 407  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEF 466

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 467  EKPTRDNTLRMKHGTYDKLEDDGLIAPGTGVIGEDIIIGKTAPIPPDSEELGQRTRTHTR 526

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 527  RDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTRVPQIGDKFASRHGQKGTIGITY 586

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 587  GQEDMPFTAEGIVPDIIINPHAI 609



 Score =  160 bits (405), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 76/165 (46%), Positives = 105/165 (63%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 527  RDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTRVPQIGDKFASRHGQKGTIGITY 586

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 587  GQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVES 646

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMV 1347
            V   L + GY  +G ++ + G TG  L+A +Y GP YYQ+LKHMV
Sbjct: 647  VSTFLRQKGYQSRGLEVMFHGHTGRKLQAQVYLGPTYYQRLKHMV 691



 Score =  109 bits (273), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 91/151 (60%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKM-ERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 40  EFNLALAVKHQTITNGLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNT 99

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM  I+  +    +++ +  
Sbjct: 100 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEE 159

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E  ++       +P    VFVNG+  G+
Sbjct: 160 WGLE--SLEENAHSQTPCTK-VFVNGVWMGV 187



 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/176 (32%), Positives = 89/176 (50%), Gaps = 22/176 (12%)

Query: 707 NEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQA 766
           N+G+       ++GI     TH EI P  +LG+CA I              +P+P HNQ+
Sbjct: 311 NDGDFDPAVRLKAGINAHTWTHCEIHPSMILGICASI--------------IPFPDHNQS 356

Query: 767 PRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
           PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 357 PRNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAI 416

Query: 827 SPGGAEELTARESCHEVLKIISFSISVAVFDSVWLG-----DVKQGVHQLSEEKEP 877
               A    +  +  + + +   SI   +F S++       + K G+ QL E ++P
Sbjct: 417 V---AILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEFEKP 469


>gi|68300810|gb|AAY89346.1| RNA polymerase II second largest subunit [Nicotiana sylvestris]
          Length = 1087

 Score =  215 bits (548), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 111/270 (41%), Positives = 166/270 (61%), Gaps = 19/270 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 620  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 679

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY  ED++IMN++S+DRGF R L +R+ +           ++ 
Sbjct: 680  RQLPAGINAIVAISCYSGYSQEDSVIMNQSSIDRGFFRSLFFRSYR---------DEEKK 730

Query: 1034 LGPLLEADTRKPV------YRHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            +G L++ D  +P        RH +   LD DG+  PG ++    V++ K+ P     A  
Sbjct: 731  MGTLVKEDFGRPDRASTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDAQG 790

Query: 1085 MATP-EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1143
             A+    K+   S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQK
Sbjct: 791  QASRYTRKDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQK 850

Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G +G+   QEDMP+   GI PDII+NPH +
Sbjct: 851  GTVGMTYTQEDMPWTVEGITPDIIVNPHAI 880



 Score =  181 bits (459), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 87/188 (46%), Positives = 121/188 (64%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            K+   S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+  
Sbjct: 798  KDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTY 857

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMP+   GI PDII+NPH  PSRMT+G+LIE + GK     G   + T F    + +
Sbjct: 858  TQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDN 917

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
            + + L + GY  +G +  Y+G TG  L A I+ GP YYQ+LKHMV DKIH+R RGP  +L
Sbjct: 918  ISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQIL 977

Query: 1363 TRQPTGRR 1370
            TRQP   R
Sbjct: 978  TRQPAEGR 985



 Score =  120 bits (300), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 64/146 (43%), Positives = 88/146 (60%), Gaps = 8/146 (5%)

Query: 192 MRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKV 251
           ++  TIT+ L  ++ TGNW        R GV+QVL+RL+Y S L  + R+NS   +  K+
Sbjct: 342 IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKL 401

Query: 252 SGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAM 311
           + PR L  SQWGM+CP++TPEG+ACGLVKNLALM +IT  +    +L+ +   G E    
Sbjct: 402 AKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTE---- 457

Query: 312 FNGEELSS---PGVYLVFVNGILAGI 334
            N EE+S    P    +FVNG   GI
Sbjct: 458 -NFEEISPAVIPQATKIFVNGTWVGI 482



 Score =  101 bits (251), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 56/141 (39%), Positives = 79/141 (56%), Gaps = 24/141 (17%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVS-----ESGIRP-----GVTTHLEIAPFTLLGVCA 741
           + D + +G IEY+D  E   + I+++     ++ + P        TH EI P  +LGVCA
Sbjct: 559 WHDLVAKGYIEYIDTEEEETTMISMTINDLXQARLNPEEAYSDTYTHCEIHPSLILGVCA 618

Query: 742 GIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYA 801
            I              +P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y 
Sbjct: 619 SI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYP 664

Query: 802 QRPMVESKTIRITNFHKLPAG 822
           Q+P+V ++ +   +F +LPAG
Sbjct: 665 QKPLVTTRAMEHLHFRQLPAG 685



 Score = 53.9 bits (128), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 53/114 (46%), Gaps = 14/114 (12%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A++ L    + H+ +       KA Y   +I R++L        DDRD+YGNKRL+LAG 
Sbjct: 246 AKEILQKEMLPHVGIGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGP 305

Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYGN 555
           LL   F  +F++   ++           K+ NL   +    + SG  + L  GN
Sbjct: 306 LLGGXFRMLFRKLTRDVRAYVQKXVDNGKDVNLQFAIKAKTITSGLKYSLATGN 359



 Score = 45.4 bits (106), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 19/80 (23%)

Query: 346 IEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVR--------------SDLV 391
           + ES   T    P   RLR+LTYSAP+ VD+     ++RV++              + + 
Sbjct: 2   MTESDGETATLFPKAARLRNLTYSAPLYVDV-----TKRVIKKGHDGEEVTETQDFTKVF 56

Query: 392 IGRMPIMLQSSKCVLRNKTE 411
           IG++PIML+SS C L   +E
Sbjct: 57  IGKVPIMLRSSYCTLYQNSE 76


>gi|83415475|gb|ABC17945.1| RNA polymerase II second largest subunit, partial [Scutellospora
            heterogama]
          Length = 761

 Score =  215 bits (548), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 105/264 (39%), Positives = 164/264 (62%), Gaps = 5/264 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL   L Y Q+P+V ++ +    F
Sbjct: 386  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLANILYYPQKPLVTTRAMEFLRF 445

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ E+++IMN++S+DRG  R + YR+     K+    + +  
Sbjct: 446  RELPAGQNAIVAILCYSGYNQENSVIMNQSSIDRGLFRSIFYRSYMDQEKKVGILSIEEF 505

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMA----TPE 1089
              P  E   R     +  L++DG++APG ++    +++ K  P I    I +     T  
Sbjct: 506  DKPTRETTLRLKHGTYEKLEEDGLIAPGTRVSGDDIIIGKVTP-IPEHTIELGQRKNTHT 564

Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
            +++     + +    +++V+V++N+E    +K+ +R TR P++GDKF+SRHGQKG IG+ 
Sbjct: 565  HRDASTPMRSTENGIVDQVMVTTNAEGMKFVKVRVRSTRIPQMGDKFASRHGQKGTIGIT 624

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
              QEDMPF   GI PD+I+NPH +
Sbjct: 625  YRQEDMPFTSEGITPDLIINPHAI 648



 Score =  187 bits (474), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 84/189 (44%), Positives = 124/189 (65%)

Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
            +++     + +    +++V+V++N+E    +K+ +R TR P++GDKF+SRHGQKG IG+ 
Sbjct: 565  HRDASTPMRSTENGIVDQVMVTTNAEGMKFVKVRVRSTRIPQMGDKFASRHGQKGTIGIT 624

Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
              QEDMPF   GI PD+I+NPH  PSRMT+G L+E L GK   + G   + T F    + 
Sbjct: 625  YRQEDMPFTSEGITPDLIINPHAIPSRMTIGHLVECLLGKVSTLTGQEGDATPFTDVTVE 684

Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
             +   L ++GY+ +G ++ Y+G TG  L A ++ GP YYQ+LKHMV DKIH+R+RGP  +
Sbjct: 685  AISHSLRQNGYHSRGFEVMYNGHTGRKLAAQVFLGPTYYQRLKHMVDDKIHSRARGPVQI 744

Query: 1362 LTRQPTGRR 1370
            LTRQP   R
Sbjct: 745  LTRQPVEGR 753



 Score =  111 bits (277), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 59/156 (37%), Positives = 93/156 (59%), Gaps = 10/156 (6%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW  ++  M+ R GV+QVL+R ++ S L  + R N+
Sbjct: 39  EFNLHLAIKAQTITNGLKYSLATGNWGDQKKAMQSRAGVSQVLNRYTFASTLSHLRRCNT 98

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNL+LM++I+  +  K ++  +  
Sbjct: 99  PMGRDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSYISVGSSSKPIVDFL-- 156

Query: 304 IGIEHIAMFNGEELSSPGVYL----VFVNGILAGIT 335
              E   M N  +   P        VFVNG  AGI+
Sbjct: 157 ---EEYGMINLNQQFDPANIRDNTKVFVNGKWAGIS 189



 Score = 94.4 bits (233), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 49/110 (44%), Positives = 63/110 (57%), Gaps = 14/110 (12%)

Query: 717 SESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMG 776
           SES +     TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMG
Sbjct: 360 SESNLSIHTWTHCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMG 405

Query: 777 KQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
           KQAMG    N Q R+DTL   L Y Q+P+V ++ +    F +LPAG+  I
Sbjct: 406 KQAMGIYVTNYQLRMDTLANILYYPQKPLVTTRAMEFLRFRELPAGQNAI 455


>gi|390604597|gb|EIN13988.1| DNA-dependent RNA polymerase II second largest subunit [Punctularia
            strigosozonata HHB-11173 SS5]
          Length = 1247

 Score =  215 bits (548), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 107/263 (40%), Positives = 163/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 774  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKF 833

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+M YSGY+ ED++IMN++S+DRG  R + +R+   + K+   Q  +  
Sbjct: 834  RELPAGQNAIVAIMCYSGYNQEDSVIMNQSSIDRGLFRSMYFRSYMDMEKKSGIQQLEEF 893

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS-AISMATPEY-- 1090
              P  +   R     +  L+ DG++APG  +    +++ K+ P    S  +   T  +  
Sbjct: 894  EKPTRDTTLRMKHGTYDKLEDDGLIAPGTNVNGEDIIIGKTAPIPPDSEELGQRTRGHTR 953

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 954  RDVSTPLKSTEQGTVDQVLITTNSEGQKFVKVRIRSTRIPQIGDKFASRHGQKGTIGITY 1013

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 1014 RQEDMPFTAEGITPDIIINPHAI 1036



 Score =  194 bits (492), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 92/188 (48%), Positives = 123/188 (65%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 954  RDVSTPLKSTEQGTVDQVLITTNSEGQKFVKVRIRSTRIPQIGDKFASRHGQKGTIGITY 1013

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 1014 RQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVES 1073

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
            V + L + GY  +G ++ Y G TG  L+A IY GP YYQ+LKHMV DKIH+R+RGP  +L
Sbjct: 1074 VSQFLRQRGYQSRGLEVMYHGHTGRKLQAQIYLGPTYYQRLKHMVDDKIHSRARGPVQIL 1133

Query: 1363 TRQPTGRR 1370
            TRQP   R
Sbjct: 1134 TRQPVEGR 1141



 Score =  112 bits (280), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 91/151 (60%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           QF++   ++ +TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 451 QFNLSLAVKHNTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT 510

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNL+LM  I+  +    +++ +  
Sbjct: 511 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMATISVGSISAPVIEFLEE 570

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E +        SS     VFVNG+  G+
Sbjct: 571 WGLESL---EENAHSSTPCTKVFVNGVWMGV 598



 Score = 94.4 bits (233), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 107/235 (45%), Gaps = 52/235 (22%)

Query: 678 PTF-LNMHQFLGFKRFDDFLYEGKIEYLDVNEGNDSHIAVS------------------- 717
           PTF  N  Q     +FD+ + EG IEYLD  E     I ++                   
Sbjct: 679 PTFDENGKQRFFQYQFDELVKEGVIEYLDAEEEETVMICMTPEDLENARLKQQGHDPSQD 738

Query: 718 ----------ESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAP 767
                     ++G +  + TH EI P  +LG+CA I              +P+P HNQ+P
Sbjct: 739 DPDFDPAARIKTGTQAHLWTHCEIHPSMILGICASI--------------IPFPDHNQSP 784

Query: 768 RNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQIS 827
           RNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  I 
Sbjct: 785 RNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIV 844

Query: 828 PGGAEELTARESCHEVLKIISFSISVAVFDSVWLG-----DVKQGVHQLSEEKEP 877
              A    +  +  + + +   SI   +F S++       + K G+ QL E ++P
Sbjct: 845 ---AIMCYSGYNQEDSVIMNQSSIDRGLFRSMYFRSYMDMEKKSGIQQLEEFEKP 896



 Score = 58.2 bits (139), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 14/114 (12%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A++ L    + H+ +       KA +   MI R++LA  +   LDDRD++G KRL+LAG 
Sbjct: 362 AQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAALERRELDDRDHFGKKRLDLAGP 421

Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYGN 555
           LL+ +F  +F++   ++           K+ NLS  V    + +G  + L  GN
Sbjct: 422 LLANLFRMLFRKLTKDVYRYLQKCIETGKQFNLSLAVKHNTITNGLKYSLATGN 475



 Score = 42.7 bits (99), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 2/52 (3%)

Query: 108 DSPEI--RDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSD 157
           D  EI   D W ++ SF  +KGLV+  +DSFD F+   +++L+  N+++  D
Sbjct: 28  DEEEITQEDCWTVISSFFDQKGLVRQQLDSFDEFVQNTMQELVDENSDLILD 79


>gi|83415483|gb|ABC17949.1| RNA polymerase II second largest subunit, partial [Mortierella
            verticillata]
          Length = 721

 Score =  215 bits (548), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 108/264 (40%), Positives = 164/264 (62%), Gaps = 5/264 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL   L Y Q+P+  ++++    F
Sbjct: 346  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQVRMDTLANILYYPQKPLATTRSMEYLRF 405

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + +R      K+    T +  
Sbjct: 406  RELPAGQNAVVAILCYSGYNQEDSVIMNQSSIDRGLFRSVYFRTYMDQEKKIGMTTMEEF 465

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMA--TPEYK 1091
              P  E   R     +  LD DG++APG ++    +++ K+ P I V +  M   T  + 
Sbjct: 466  EKPTREHVLRLRHGTYEKLDDDGLIAPGTRVSGDDIIIGKTKP-IPVDSTEMGQRTGSHS 524

Query: 1092 EVPVS--YKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
            ++  S   + +    +++V++++N E    +K+ +R TR P++GDKF+SRHGQKG IG+ 
Sbjct: 525  KLDASTPLRSTETGIVDQVMLTTNHEGVKFVKVRVRSTRVPQMGDKFASRHGQKGTIGIT 584

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
              QEDMPF   GI PDII+NPH +
Sbjct: 585  YRQEDMPFTCEGITPDIIINPHAI 608



 Score =  187 bits (476), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 85/174 (48%), Positives = 118/174 (67%)

Query: 1197 LEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICP 1256
            +++V++++N E    +K+ +R TR P++GDKF+SRHGQKG IG+   QEDMPF   GI P
Sbjct: 540  VDQVMLTTNHEGVKFVKVRVRSTRVPQMGDKFASRHGQKGTIGITYRQEDMPFTCEGITP 599

Query: 1257 DIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQG 1316
            DII+NPH  PSRMT+G L+E L  K   +EG+  + T F    +  + E L +H Y  +G
Sbjct: 600  DIIINPHAIPSRMTIGHLVECLLSKVSTLEGSEGDATPFTDVTVEAISEALKKHNYQQRG 659

Query: 1317 KDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRR 1370
             ++ Y+G TG  L A ++ GP YYQ+LKHMV DKIH+R+RGP  +LTRQP   R
Sbjct: 660  FEVMYNGHTGRKLAAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGR 713



 Score =  113 bits (282), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 58/147 (39%), Positives = 94/147 (63%), Gaps = 9/147 (6%)

Query: 192 MRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINSQFEKTRK 250
           ++ +TITN L  ++ TGNW  +   M+ R GV+QVL+R ++ S L  + R N+   +  K
Sbjct: 46  VKSNTITNGLKYSLATGNWGEQLKAMQSRAGVSQVLNRYTFASTLSHLRRCNTPIGRDGK 105

Query: 251 VSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIA 310
           ++ PR L  + WGM+CP++TPEG+ACGLVKNLALM+ I+  +    +++ +   G+E++ 
Sbjct: 106 LAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSAISVGSPSAPIIEFLEGWGMENL- 164

Query: 311 MFNGEELSSPGVY---LVFVNGILAGI 334
               EEL++  +     VFVNG+ AG+
Sbjct: 165 ----EELTANNILDATKVFVNGVWAGV 187



 Score = 90.1 bits (222), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 44/100 (44%), Positives = 59/100 (59%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 330 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYVTN 375

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
            Q R+DTL   L Y Q+P+  ++++    F +LPAG+  +
Sbjct: 376 YQVRMDTLANILYYPQKPLATTRSMEYLRFRELPAGQNAV 415


>gi|300394754|gb|ADK11915.1| DNA-directed RNA polymerase II subunit two, partial [Suillus
            bresadolae]
          Length = 694

 Score =  215 bits (548), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 105/263 (39%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 350  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKF 409

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 410  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEF 469

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  ++ DG++APG  +    +++ K+ P    S        T   
Sbjct: 470  EKPTRDTTLRMKHGTYDKIEDDGLIAPGTGVSGEDIIIGKTAPIPPDSEELGQRTRTHTR 529

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 530  RDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITY 589

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDI++NPH +
Sbjct: 590  RQEDMPFTAEGIVPDIVINPHAI 612



 Score =  162 bits (409), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 76/165 (46%), Positives = 105/165 (63%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 530  RDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITY 589

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDI++NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 590  RQEDMPFTAEGIVPDIVINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVES 649

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMV 1347
            V   L + GY  +G ++ Y G TG  L+A +Y GP YYQ+LKHMV
Sbjct: 650  VSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMV 694



 Score =  111 bits (278), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 93/151 (61%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 43  EFNLSLAVKHQTITNGLKYSLATGNWGDQKKAMSSKAGVSQVLNRYTYASTLSHLRRTNT 102

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM+ I+  +    +++ +  
Sbjct: 103 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSYSAPVIEFLEE 162

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E  ++      S+P    VFVNG+  G+
Sbjct: 163 WGLE--SLEENAHSSTPCTK-VFVNGVWMGV 190



 Score = 92.4 bits (228), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/176 (34%), Positives = 90/176 (51%), Gaps = 22/176 (12%)

Query: 707 NEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQA 766
           N+G+    A  ++GI     TH EI P  +LGVCA I              +P+P HNQ+
Sbjct: 314 NDGDYDPAARLKAGINSHTWTHCEIHPSMILGVCASI--------------IPFPDHNQS 359

Query: 767 PRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
           PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 360 PRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAI 419

Query: 827 SPGGAEELTARESCHEVLKIISFSISVAVFDSVWLG-----DVKQGVHQLSEEKEP 877
               A    +  +  + + +   SI   +F S++       + K GV QL E ++P
Sbjct: 420 V---AILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKP 472


>gi|123979382|gb|ABM81516.1| RNA polymerase II second largest subunit [Parmeliella appalachensis]
          Length = 704

 Score =  215 bits (548), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 106/264 (40%), Positives = 166/264 (62%), Gaps = 5/264 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 363  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDQRMDTMANILYYPQKPLATTRSMEFLKF 422

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR+     K+      ++ 
Sbjct: 423  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSVVEQF 482

Query: 1034 LGPLLEADTRKPVY-RHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAISMATPEY- 1090
              P +++DT K  +  +  LD DGIVAPG ++    +++ K+ P       +   T  + 
Sbjct: 483  EKP-MKSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKLHV 541

Query: 1091 -KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             ++V    + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHGQKG IG+ 
Sbjct: 542  KRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGIT 601

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
              QEDMPF   G+ PD+I+NPH +
Sbjct: 602  YRQEDMPFTSEGVVPDLIINPHAI 625



 Score =  145 bits (367), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 80/231 (34%), Positives = 125/231 (54%), Gaps = 13/231 (5%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESG-ICPDIIMNPHGL 1173
            ++ Q  +P   D    +HG        G++  G+ V  ED+   ++  I PD       L
Sbjct: 478  VVEQFEKPMKSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPD----AEEL 533

Query: 1174 KGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
                ++   ++V    + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHG
Sbjct: 534  GQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHG 593

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGT 1293
            QKG IG+   QEDMPF   G+ PD+I+NPH  PSRMT+  LIE    K   + G   + T
Sbjct: 594  QKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDAT 653

Query: 1294 AFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLK 1344
             F    +  V   L  HGY  +G ++ Y+G TG  L A ++ GP YYQ+L+
Sbjct: 654  PFTEVTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLR 704



 Score =  116 bits (290), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 93/151 (61%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  T+TN L  ++ TGNW   ++    + GV+QVL+R ++ S L  + R N+
Sbjct: 39  EFNLTLGVKSTTLTNGLKYSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRANT 98

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT  +  + +++ M  
Sbjct: 99  PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGSPSEPIIEFMIT 158

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
             +E +  +  E L SP    VFVNG+  G+
Sbjct: 159 RNMEILEEY--EPLRSPNATKVFVNGVWVGV 187



 Score = 90.5 bits (223), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 347 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 392

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 393 YDQRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 432


>gi|110669602|gb|ABG81896.1| RNA polymerase II second largest subunit [Lecanora hybocarpa]
          Length = 703

 Score =  215 bits (548), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 110/287 (38%), Positives = 172/287 (59%), Gaps = 5/287 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N + R+DT+   L Y Q+P+  ++++    F
Sbjct: 355  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYEQRMDTMANILYYPQKPLATTRSMEFLKF 414

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR      K+      ++ 
Sbjct: 415  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQEKRIGLAVLEQF 474

Query: 1034 LGPLLEADTRKPVY-RHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAISMATPEY- 1090
              P + +DT K  +  +  LD DG+VAPG ++    +++ K+ P       +   T  + 
Sbjct: 475  EKP-MRSDTLKLKHGTYDKLDDDGVVAPGVRVSGEDIIIGKTAPMAPDAEELGQRTKAHT 533

Query: 1091 -KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             ++V    + +    +++VL+S+N++    +K+ +R T+ P+IGDKF+SRHGQKG IG+ 
Sbjct: 534  KRDVSTPLRSTENGIVDQVLMSTNADGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGIT 593

Query: 1150 VEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSY 1196
              QEDMPF   G+ PD+I+NPH +     I    E  +S   S+  Y
Sbjct: 594  YRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGY 640



 Score =  156 bits (395), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 86/238 (36%), Positives = 131/238 (55%), Gaps = 13/238 (5%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESG-ICPDIIMNPHGL 1173
            +L Q  +P   D    +HG        GV+  G+ V  ED+   ++  + PD       L
Sbjct: 470  VLEQFEKPMRSDTLKLKHGTYDKLDDDGVVAPGVRVSGEDIIIGKTAPMAPD----AEEL 525

Query: 1174 KGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
                +    ++V    + +    +++VL+S+N++    +K+ +R T+ P+IGDKF+SRHG
Sbjct: 526  GQRTKAHTKRDVSTPLRSTENGIVDQVLMSTNADGLRFVKVRMRTTKIPQIGDKFASRHG 585

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGT 1293
            QKG IG+   QEDMPF   G+ PD+I+NPH  PSRMT+  LIE    K   + G   + T
Sbjct: 586  QKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGYEGDAT 645

Query: 1294 AFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKI 1351
             F    +  V   L ++GY  +G ++ Y+G TG  L A ++ GP YYQ+L+HMV DKI
Sbjct: 646  PFTEVTVDSVSRLLRQNGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKI 703



 Score =  114 bits (286), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 93/151 (61%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  T+TN L  ++ TGNW   ++    + GV+QVL+R ++ S L  + R N+
Sbjct: 36  EFNLTLAVKSTTLTNGLKYSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNT 95

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT     + ++  M +
Sbjct: 96  PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPLIDFMIS 155

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
             +E +  +  E ++SP    +FVNG+  G+
Sbjct: 156 KSMEVLEEY--EPVNSPHATKIFVNGVWVGV 184



 Score = 91.3 bits (225), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 59/100 (59%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 339 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 384

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
            + R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 385 YEQRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 424


>gi|55583706|gb|AAV53372.1| RNA polymerase II second largest subunit [Suillus pictus]
          Length = 899

 Score =  215 bits (548), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 105/263 (39%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 536  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKF 595

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 596  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEF 655

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  ++ DG++APG  +    +++ K+ P    S        T   
Sbjct: 656  EKPTRDTTLRMKHGTYDKIEDDGLIAPGTGVSGEDIIIGKTAPIPPDSEELGQRTRTHTR 715

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 716  RDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITY 775

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDI++NPH +
Sbjct: 776  RQEDMPFTAEGIVPDIVINPHAI 798



 Score =  191 bits (485), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 89/184 (48%), Positives = 122/184 (66%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 716  RDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITY 775

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDI++NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 776  RQEDMPFTAEGIVPDIVINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVES 835

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
            V   L + GY  +G ++ Y G TG+ L+A +Y GP YYQ+LKHMV DKIH+R+RGP  +L
Sbjct: 836  VSTFLRQKGYQSRGLEVMYHGHTGKKLQAQVYLGPTYYQRLKHMVDDKIHSRARGPVQIL 895

Query: 1363 TRQP 1366
            TRQP
Sbjct: 896  TRQP 899



 Score =  111 bits (277), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 92/151 (60%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 229 EFNLSLAVKHQTITNGLKYSLATGNWGDQKKAMSSKAGVSQVLNRYTYASTLSHLRRTNT 288

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM  I+  +    +++ +  
Sbjct: 289 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEE 348

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E  ++      S+P    VFVNG+  G+
Sbjct: 349 WGLE--SLEENAHSSTPCTK-VFVNGVWMGV 376



 Score = 92.8 bits (229), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/176 (34%), Positives = 90/176 (51%), Gaps = 22/176 (12%)

Query: 707 NEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQA 766
           N+G+    A  ++GI     TH EI P  +LGVCA I              +P+P HNQ+
Sbjct: 500 NDGDYDPAARLKAGINSHTWTHCEIHPSMILGVCASI--------------IPFPDHNQS 545

Query: 767 PRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
           PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 546 PRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAI 605

Query: 827 SPGGAEELTARESCHEVLKIISFSISVAVFDSVWLG-----DVKQGVHQLSEEKEP 877
               A    +  +  + + +   SI   +F S++       + K GV QL E ++P
Sbjct: 606 V---AILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKP 658



 Score = 59.7 bits (143), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 58/114 (50%), Gaps = 14/114 (12%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A++ L    + H+ +       KA +   MI R++LA  +   LDDRD++G KRL+LAG 
Sbjct: 140 AQEILQKEMLPHVSMSEGSESKKAYFFGYMIHRLLLAALERRELDDRDHFGKKRLDLAGP 199

Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYGN 555
           LL+ +F  +FK+   ++           KE NLS  V    + +G  + L  GN
Sbjct: 200 LLAGLFRMLFKKLTRDVYRYLQKCVETHKEFNLSLAVKHQTITNGLKYSLATGN 253


>gi|119644059|gb|ABL85604.1| RNA polymerase II second largest subunit [Hypotrachyna degelii]
          Length = 708

 Score =  215 bits (547), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 109/267 (40%), Positives = 168/267 (62%), Gaps = 11/267 (4%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG   +N + R+DT+   L Y Q+P+  ++++    F
Sbjct: 370  IIPFPDHNQSPRNTYQSAMGKQAMGXXSFNYEQRMDTMANILYYPQKPLATTRSMEFLKF 429

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR      K+      ++ 
Sbjct: 430  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQEKRIGMSVVEQF 489

Query: 1034 LGPLLEADTRKPVY-RHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKE 1092
              P + +DT K  +  +  LD DG+VAPG ++    +++ K+ P I+  A  +   +  +
Sbjct: 490  EKP-MRSDTLKLKHGTYDKLDDDGLVAPGVRVSGEDIIIGKTAP-IAPDAEELG--QRTK 545

Query: 1093 VPVSYKGSVP------SYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVI 1146
            + V    S P        +++VL+S+N+E    +K+ +R T+ P+IGDKF+SRHGQKG I
Sbjct: 546  LHVKRDTSTPLRSTENGIVDQVLLSTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTI 605

Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G+   QEDMPF   G+ PD+I+NPH +
Sbjct: 606  GITYRQEDMPFTSEGMVPDLIINPHAI 632



 Score =  142 bits (357), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 80/228 (35%), Positives = 121/228 (53%), Gaps = 13/228 (5%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESG-ICPDIIMNPHGL 1173
            ++ Q  +P   D    +HG        G++  G+ V  ED+   ++  I PD       L
Sbjct: 485  VVEQFEKPMRSDTLKLKHGTYDKLDDDGLVAPGVRVSGEDIIIGKTAPIAPDA----EEL 540

Query: 1174 KGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
                ++   ++     + +    +++VL+S+N+E    +K+ +R T+ P+IGDKF+SRHG
Sbjct: 541  GQRTKLHVKRDTSTPLRSTENGIVDQVLLSTNAEGLRFVKVRMRTTKIPQIGDKFASRHG 600

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGT 1293
            QKG IG+   QEDMPF   G+ PD+I+NPH  PSRMT+  LIE L  K   + G   + T
Sbjct: 601  QKGTIGITYRQEDMPFTSEGMVPDLIINPHAIPSRMTIAHLIECLLSKVSSLRGFEGDAT 660

Query: 1294 AFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQ 1341
             F    +  V   L  HGY  +G ++ Y+G TG  L   I+ GP YYQ
Sbjct: 661  PFTEVTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVTQIFLGPTYYQ 708



 Score =  111 bits (278), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 91/151 (60%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++   +TN L  ++ TGNW  ++     + GV+QVL+R ++ S L  + R N+
Sbjct: 46  EFNMTLAVKSTHLTNGLRYSLATGNWGDQKKAASVKAGVSQVLNRYTFASTLSHLRRTNT 105

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT     + ++  M  
Sbjct: 106 PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIVDFMIQ 165

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
             +E +  +  E L+SP    +FVNG+  G+
Sbjct: 166 RNMEVLEEY--EPLNSPNATKIFVNGVWVGV 194



 Score = 93.2 bits (230), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 60/100 (60%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG   +N
Sbjct: 354 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGXXSFN 399

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
            + R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 400 YEQRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 439


>gi|58266096|ref|XP_570204.1| DNA-dependent RNA polymerase II RPB140 [Cryptococcus neoformans var.
            neoformans JEC21]
 gi|57226437|gb|AAW42897.1| DNA-dependent RNA polymerase II RPB140, putative [Cryptococcus
            neoformans var. neoformans JEC21]
          Length = 1193

 Score =  215 bits (547), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 112/269 (41%), Positives = 167/269 (62%), Gaps = 12/269 (4%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            +VP+P HNQ+PRNTYQ AMGKQAMG    N Q R+DT++  L Y Q+P+  ++++    F
Sbjct: 725  IVPFPDHNQSPRNTYQSAMGKQAMGVCLTNYQLRMDTMVNVLYYPQKPLATTRSMEYLKF 784

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRN------SKCVLKQYPN 1027
             +LPAGQNA +A+M YSGY+ ED++IMN++S+DRG  R L +R+       K ++K    
Sbjct: 785  SELPAGQNAIVAIMCYSGYNQEDSVIMNQSSIDRGLFRSLYFRSYTDTEKMKGMVKAETI 844

Query: 1028 QTHDRILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS-AISMA 1086
            +  DR     ++  T     R+  LD DG+VAPG  +    +L+ K+ P    S  +   
Sbjct: 845  EKPDRNETLRMKHGTGD---RYAKLDVDGLVAPGTNVNGDDILIGKTAPLPEDSEELGQR 901

Query: 1087 TPEY--KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKG 1144
            T  +  +++    K +    +++V++S+N E    +K+ +R TR P+IGDKF+SRHGQKG
Sbjct: 902  TQLHTKRDISTPLKSTEQGVVDQVMLSTNGEGNMFVKIRVRSTRVPQIGDKFASRHGQKG 961

Query: 1145 VIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
             IG+   QEDMPF   G+ PDII+NPH +
Sbjct: 962  TIGITYRQEDMPFTAEGLVPDIIINPHAI 990



 Score =  187 bits (475), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 88/188 (46%), Positives = 120/188 (63%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            +++    K +    +++V++S+N E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 908  RDISTPLKSTEQGVVDQVMLSTNGEGNMFVKIRVRSTRVPQIGDKFASRHGQKGTIGITY 967

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   G+ PDII+NPH  PSRMT+G L+E L  K   + G   + T F    +  
Sbjct: 968  RQEDMPFTAEGLVPDIIINPHAIPSRMTIGHLVECLLSKVSTLTGAEGDATPFTELTVEA 1027

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
            V + L   GY  +G ++ Y G TG  L+A +Y GP YYQ+LKHMV DKIHAR+RGP  +L
Sbjct: 1028 VSKVLRAKGYQSRGFEVLYHGHTGRKLQAQVYFGPTYYQRLKHMVDDKIHARARGPLQIL 1087

Query: 1363 TRQPTGRR 1370
            TRQP   R
Sbjct: 1088 TRQPVEGR 1095



 Score =  116 bits (290), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 58/150 (38%), Positives = 90/150 (60%), Gaps = 6/150 (4%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQ 244
           +F +   +R +TIT+ L  A+ TGNW  R     R GV+QVL+R ++ S L  + R N+ 
Sbjct: 416 EFALNMAIRPNTITDGLKYALATGNWGKR--DNTRAGVSQVLNRYTFASTLSHLRRTNTP 473

Query: 245 FEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNI 304
             +  K + PR L  + WGM+CP++TPEG ACGLVKNLALM++I+  +    +++ +   
Sbjct: 474 IGRDSKAAKPRQLHNTHWGMVCPAETPEGSACGLVKNLALMSYISVGSYSAPVMEFLEEW 533

Query: 305 GIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
           G+E ++ +      +P    VFVNG+  GI
Sbjct: 534 GLEDLSEYQ----DAPTATKVFVNGVWMGI 559



 Score = 92.8 bits (229), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/100 (46%), Positives = 61/100 (61%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH+EI P  +LGVCA I              VP+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 709 THMEIHPSMILGVCASI--------------VPFPDHNQSPRNTYQSAMGKQAMGVCLTN 754

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
            Q R+DT++  L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 755 YQLRMDTMVNVLYYPQKPLATTRSMEYLKFSELPAGQNAI 794


>gi|45545323|gb|AAS67509.1| DNA-dependent RNA polymerase II second largest subunit, partial
            [Cryptococcus neoformans]
          Length = 1114

 Score =  215 bits (547), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 111/269 (41%), Positives = 167/269 (62%), Gaps = 12/269 (4%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DT++  L Y Q+P+  ++++    F
Sbjct: 769  IIPFPDHNQSPRNTYQSAMGKQAMGVCLTNYQLRMDTMVNVLYYPQKPLATTRSMEYLKF 828

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRN------SKCVLKQYPN 1027
             +LPAGQNA +A+M YSGY+ ED++IMN++S+DRG  R L +R+       K ++K    
Sbjct: 829  SELPAGQNAIVAIMCYSGYNQEDSVIMNQSSIDRGLFRSLYFRSYTDTEKMKGMVKAETI 888

Query: 1028 QTHDRILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS-AISMA 1086
            +  DR     ++  T     R+  LD DG+VAPG  +    +L+ K+ P    S  +   
Sbjct: 889  EKPDRNETLRMKHGTGD---RYAKLDVDGLVAPGTNVNGDDILIGKTAPLPEDSEELGQR 945

Query: 1087 TPEY--KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKG 1144
            T  +  +++    K +    +++V++S+N E    +K+ +R TR P+IGDKF+SRHGQKG
Sbjct: 946  TQLHTKRDISTPLKSTEQGVVDQVMLSTNGEGNMFVKIRVRSTRVPQIGDKFASRHGQKG 1005

Query: 1145 VIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
             IG+   QEDMPF   G+ PDII+NPH +
Sbjct: 1006 TIGITYRQEDMPFTAEGLVPDIIINPHAI 1034



 Score =  153 bits (386), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 71/163 (43%), Positives = 101/163 (61%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            +++    K +    +++V++S+N E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 952  RDISTPLKSTEQGVVDQVMLSTNGEGNMFVKIRVRSTRVPQIGDKFASRHGQKGTIGITY 1011

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   G+ PDII+NPH  PSRMT+G L+E L  K   + G   + T F    +  
Sbjct: 1012 RQEDMPFTAEGLVPDIIINPHAIPSRMTIGHLVECLLSKVSTLTGAEGDATPFTELTVEA 1071

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKH 1345
            V + L   GY  +G ++ Y G TG  L+A +Y GP YYQ+LKH
Sbjct: 1072 VSKVLRAKGYQSRGFELLYHGHTGRKLQAQVYFGPTYYQRLKH 1114



 Score =  113 bits (283), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 57/150 (38%), Positives = 89/150 (59%), Gaps = 6/150 (4%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQ 244
           +F +   +R +TIT+ L  A+ TGNW  R     R GV+QVL+  ++ S L  + R N+ 
Sbjct: 460 EFALNMAIRPNTITDGLKYALATGNWGKR--DNTRAGVSQVLNSYTFTSTLSHLRRTNTP 517

Query: 245 FEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNI 304
             +  K + PR L  + WGM+CP++TPEG ACGLVKNLALM++I+  +    +++ +   
Sbjct: 518 IGRDSKAAKPRQLHDTHWGMVCPAETPEGSACGLVKNLALMSYISVGSYSAPVMEFLEEW 577

Query: 305 GIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
           G+E ++ +      +P    VFVNG+  GI
Sbjct: 578 GLEDLSEYQ----DAPTATKVFVNGVWMGI 603



 Score = 92.4 bits (228), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 45/100 (45%), Positives = 61/100 (61%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH+EI P  +LGVCA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 753 THMEIHPSMILGVCASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVCLTN 798

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
            Q R+DT++  L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 799 YQLRMDTMVNVLYYPQKPLATTRSMEYLKFSELPAGQNAI 838



 Score = 56.2 bits (134), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 42/77 (54%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A D L    + H+         KA +L  M+ R+ +A      LDDRD++GNKRL+LAG 
Sbjct: 371 AFDILHKEFLPHVSTAEGFESKKAYFLGYMVHRLCMAALGRRELDDRDHFGNKRLDLAGP 430

Query: 516 LLSLMFEDVFKRFNSEL 532
           L++ MF  VF +   ++
Sbjct: 431 LMAEMFNVVFGKLREDM 447


>gi|68131884|gb|AAY85220.1| RNA polymerase II second largest subunit [Berberis nervosa]
          Length = 540

 Score =  215 bits (547), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 109/271 (40%), Positives = 166/271 (61%), Gaps = 20/271 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 201  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHF 260

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L +R+ +           ++ 
Sbjct: 261  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR---------DEEKK 311

Query: 1034 LGPLLEADTRKPV------YRHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            +G L++ D  +P        RH +   LD DG+  PG ++    V++ K+ P        
Sbjct: 312  MGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAPDETQG 371

Query: 1085 MATPEY--KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQ 1142
                +Y  ++   S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQ
Sbjct: 372  GVASQYTKRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQ 431

Query: 1143 KGVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            KG +G+   QEDMP+   GI PDII+NPH +
Sbjct: 432  KGTVGMTYTQEDMPWTMEGITPDIIVNPHAI 462



 Score =  144 bits (363), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 68/157 (43%), Positives = 99/157 (63%)

Query: 1187 VSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQED 1246
             S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   QED
Sbjct: 384  TSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 443

Query: 1247 MPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEE 1306
            MP+   GI PDII+NPH  PSRMT+G+LIE + GK     G   + T F    + ++ + 
Sbjct: 444  MPWTMEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 503

Query: 1307 LIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKL 1343
            L + GY  +G +  Y+G TG  L A I+ GP YYQ+L
Sbjct: 504  LHKCGYQMRGFETMYNGHTGRKLTAMIFLGPTYYQRL 540



 Score =  101 bits (252), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 64/171 (37%), Positives = 87/171 (50%), Gaps = 39/171 (22%)

Query: 677 RPTFLNMHQFLGFKRFD----------------DFLYEGKIEYLDVNEGNDSHIAVS--- 717
           RP F+  +Q L  K+ D                D + +G IEY+D  E   + I+++   
Sbjct: 110 RPLFIVENQRLLIKKKDIRALQQRESLDEGGWHDLVAKGYIEYVDTEEEETTMISMTIDD 169

Query: 718 --ESGIRPGVT----THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTY 771
              +   P  T    TH EI P  +LGVCA I              +P+P HNQ+PRNTY
Sbjct: 170 LVNARTNPNETYQLYTHCEIHPSLILGVCASI--------------IPFPDHNQSPRNTY 215

Query: 772 QCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAG 822
           Q AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F +LPAG
Sbjct: 216 QSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG 266



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 8/69 (11%)

Query: 269 DTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMFNGEELSS---PGVYLV 325
           +TPEG+ACGLVKNLALM +IT  +    +L+ +     E  +  N EE+S    P  + +
Sbjct: 1   ETPEGQACGLVKNLALMVYITVGSAANPILEFL-----EEWSTENFEEISPSVIPTAHKI 55

Query: 326 FVNGILAGI 334
           FVNG   GI
Sbjct: 56  FVNGCWVGI 64


>gi|120561261|gb|ABM27015.1| RNA polymerase II second largest subunit, partial [Allomyces
            macrogynus]
          Length = 896

 Score =  215 bits (547), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 108/282 (38%), Positives = 172/282 (60%), Gaps = 2/282 (0%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL   L Y Q+P+V +++++   F
Sbjct: 529  IIPFPDHNQSPRNTYQSAMGKQAMGLYLTNFQLRMDTLANILYYPQKPLVATRSMKYLRF 588

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R + YR      K+      +  
Sbjct: 589  RELPAGQNAVVAIAVYSGYNQEDSIIMNQSSIDRGLFRSIYYRAYMDQEKKSGFSDVETF 648

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKS--MPTISVSAISMATPEYK 1091
              P  E   +     +  +++DG+VAPG ++    +++ K+  +P  +    +  T   K
Sbjct: 649  EKPARETTLKLRHGSYDKIEEDGLVAPGTRVTGDDIIIGKTAPLPPDTSEMGARTTQTKK 708

Query: 1092 EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVE 1151
            +V  S K +    ++ V++++N++    +K+ +R TR P++GDKF+SRHGQKG +G+   
Sbjct: 709  DVSTSLKSTEQGIVDHVMLTTNNDGYKFVKVRVRSTRVPQMGDKFASRHGQKGTVGMTYR 768

Query: 1152 QEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSV 1193
            QEDMPF+  G+ PD+I+NPH +     I    E  +S  GS+
Sbjct: 769  QEDMPFSADGVTPDLIVNPHAIPSRMTIGHLVECLLSKVGSL 810



 Score =  187 bits (475), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 85/188 (45%), Positives = 125/188 (66%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            K+V  S K +    ++ V++++N++    +K+ +R TR P++GDKF+SRHGQKG +G+  
Sbjct: 708  KDVSTSLKSTEQGIVDHVMLTTNNDGYKFVKVRVRSTRVPQMGDKFASRHGQKGTVGMTY 767

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF+  G+ PD+I+NPH  PSRMT+G L+E L  K G + G   + T F    + +
Sbjct: 768  RQEDMPFSADGVTPDLIVNPHAIPSRMTIGHLVECLLSKVGSLTGTEGDATPFTDITVQE 827

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
            + + L   GY  +G +I Y+G TG+ L A ++ GP YYQ+LKHMV DKIH+R+RGP  +L
Sbjct: 828  IADRLRSCGYQQRGFEIMYNGHTGKKLAAQVFFGPTYYQRLKHMVDDKIHSRARGPLQIL 887

Query: 1363 TRQPTGRR 1370
            TRQP   R
Sbjct: 888  TRQPVEGR 895



 Score =  114 bits (284), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 61/157 (38%), Positives = 95/157 (60%), Gaps = 9/157 (5%)

Query: 182 KAAQFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTR 240
           +  +F++   +  +TITN L  A+ TGNW  ++  ME R GV+QVL+R ++ S L  + R
Sbjct: 226 RGREFNLNMAINSNTITNGLRYALATGNWGDQKKFMETRAGVSQVLNRYTFASTLSHLRR 285

Query: 241 INSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKI 300
           +N+   +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM +I+  +    +L+ 
Sbjct: 286 LNTPIGREGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMAYISVGSASGPILEF 345

Query: 301 MYNIGIEHIAMFNGEELSSPGV---YLVFVNGILAGI 334
           +     E     N EE+++  +     VFVNG   GI
Sbjct: 346 L-----EEWTTENLEEITASAIGSNTKVFVNGSWVGI 377



 Score = 90.9 bits (224), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 44/100 (44%), Positives = 61/100 (61%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           +H EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 513 SHCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGLYLTN 558

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
            Q R+DTL   L Y Q+P+V +++++   F +LPAG+  +
Sbjct: 559 FQLRMDTLANILYYPQKPLVATRSMKYLRFRELPAGQNAV 598



 Score = 56.2 bits (134), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 14/114 (12%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A D L    + HI +       K+ ++  M+ R++LA      +DDRD++G KRL+LAG 
Sbjct: 140 AHDLLERELLPHIGITPGCQTRKSYFIGYMVHRLLLAALGRRQVDDRDHFGKKRLDLAGP 199

Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLSGVVN---LVSGWWFELKYGN 555
           LL+ +F   F++   ++           +E NL+  +N   + +G  + L  GN
Sbjct: 200 LLASLFRTFFQKLTKDVSRYFTVCIERGREFNLNMAINSNTITNGLRYALATGN 253


>gi|374635617|ref|ZP_09707212.1| DNA-directed RNA polymerase subunit B [Methanotorris formicicus
            Mc-S-70]
 gi|373561683|gb|EHP87912.1| DNA-directed RNA polymerase subunit B [Methanotorris formicicus
            Mc-S-70]
          Length = 599

 Score =  215 bits (547), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 115/264 (43%), Positives = 159/264 (60%), Gaps = 3/264 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            G+ PYP HN APR T   AMGKQ++G    N + R+DT  + L Y Q P+V +K   I  
Sbjct: 125  GVAPYPEHNSAPRITMAAAMGKQSLGIPMSNFRWRLDTRGHILHYPQVPIVRTKHQEILG 184

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F K PAGQN  +A+MSY GY++EDA I+NKAS+DRG GR   +R      K+YP    DR
Sbjct: 185  FDKRPAGQNFVVAIMSYEGYNMEDAFIINKASIDRGLGRSTFFRTYDSYEKRYPGGQVDR 244

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPT--ISVSAISMAT-PE 1089
               P       +    +R L +DG+V P  ++    V++ K+ P   +    IS+ T  +
Sbjct: 245  FEIPEKGVRGYRAEEAYRNLGEDGLVEPECEVKSGDVIIGKTSPPRFLEEHEISLQTKSQ 304

Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             ++  V+ +      ++ V++S   E   L+K+ +R  R PE+GDKF+SRHGQKGVIGLI
Sbjct: 305  RRDTSVTVRHGEEGVVDCVILSETKEGNRLVKVRVRDLRIPELGDKFASRHGQKGVIGLI 364

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
            V QEDMPF ESGI PD+I+NPH +
Sbjct: 365  VPQEDMPFTESGIVPDLIINPHAI 388



 Score =  201 bits (511), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 98/193 (50%), Positives = 133/193 (68%)

Query: 1180 TEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1239
            ++ ++  V+ +      ++ V++S   E   L+K+ +R  R PE+GDKF+SRHGQKGVIG
Sbjct: 303  SQRRDTSVTVRHGEEGVVDCVILSETKEGNRLVKVRVRDLRIPELGDKFASRHGQKGVIG 362

Query: 1240 LIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTK 1299
            LIV QEDMPF ESGI PD+I+NPH  PSRMTVG+++E++ GK G +E    +GT F G K
Sbjct: 363  LIVPQEDMPFTESGIVPDLIINPHAIPSRMTVGQVLEMIGGKVGSLECRRVDGTIFSGEK 422

Query: 1300 LVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPR 1359
              D+++ L  HG+ + GK++ Y G TG+  E  I+ G VYYQKL H+V  KIHARSRGP 
Sbjct: 423  EWDLRKALEEHGFKHHGKEVMYDGKTGKKFEVEIFIGVVYYQKLHHLVAGKIHARSRGPV 482

Query: 1360 VVLTRQPTGRRWK 1372
             VLTRQPT  R +
Sbjct: 483  QVLTRQPTEGRAR 495



 Score = 92.8 bits (229), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/133 (41%), Positives = 72/133 (54%), Gaps = 15/133 (11%)

Query: 691 RFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNK 750
           +F D + EG IEYLD  E  +++IAV E  +     THLEI P  +LG+ AG+       
Sbjct: 75  KFSDLVKEGVIEYLDAEEEENAYIAVYEDELTE-EHTHLEIDPSVILGIGAGV------- 126

Query: 751 RFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKT 810
                   PYP HN APR T   AMGKQ++G    N + R+DT  + L Y Q P+V +K 
Sbjct: 127 -------APYPEHNSAPRITMAAAMGKQSLGIPMSNFRWRLDTRGHILHYPQVPIVRTKH 179

Query: 811 IRITNFHKLPAGK 823
             I  F K PAG+
Sbjct: 180 QEILGFDKRPAGQ 192


>gi|70794974|gb|AAZ08461.1| RNA polymerase II second largest subunit [Liriodendron tulipifera]
          Length = 942

 Score =  215 bits (547), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 109/270 (40%), Positives = 167/270 (61%), Gaps = 19/270 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 604  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHF 663

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L +R+ +           ++ 
Sbjct: 664  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR---------DEEKK 714

Query: 1034 LGPLLEADTRKPV------YRHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            +G L++ D  +P        RH +   LD DG+  PG ++    V++ K+ P     +  
Sbjct: 715  MGTLIKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDESQG 774

Query: 1085 MATP-EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1143
             A+    ++   S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQK
Sbjct: 775  QASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQK 834

Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G +G+   QEDMP+   GI PDII+NPH +
Sbjct: 835  GTVGMTYTQEDMPWTVEGITPDIIVNPHAI 864



 Score =  145 bits (365), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 68/157 (43%), Positives = 100/157 (63%)

Query: 1187 VSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQED 1246
             S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   QED
Sbjct: 786  TSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 845

Query: 1247 MPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEE 1306
            MP+   GI PDII+NPH  PSRMT+G+LIE + GK  +  G   + T F    + ++ + 
Sbjct: 846  MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAVHMGKEGDATPFTDVTVDNISKA 905

Query: 1307 LIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKL 1343
            L + GY  +G +  Y+G TG  L A I+ GP YYQ+L
Sbjct: 906  LHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 942



 Score =  115 bits (287), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 61/146 (41%), Positives = 87/146 (59%), Gaps = 8/146 (5%)

Query: 192 MRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKV 251
           ++  TIT+ L  ++ TGNW        R GV+QVL+RL++ S L  + R+NS   +  K+
Sbjct: 327 IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTFASTLSHLRRLNSPIGREGKL 386

Query: 252 SGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAM 311
           + PR L  S WGM+CP++TPEG+ACGLVKNLALM +IT  +    +L+ +     E  + 
Sbjct: 387 AKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFL-----EEWST 441

Query: 312 FNGEELSS---PGVYLVFVNGILAGI 334
            N EE+S    P    +FVNG   GI
Sbjct: 442 ENFEEISPAVIPQATKIFVNGCWVGI 467



 Score =  100 bits (250), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 56/141 (39%), Positives = 77/141 (54%), Gaps = 24/141 (17%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPG----------VTTHLEIAPFTLLGVCA 741
           + D + +G IEY+D  E   + I+++ S +               TH EI P  +LGVCA
Sbjct: 543 WHDLVAKGFIEYVDTEEEETTMISMTISDLVSARLNPDEAYSETYTHCEIHPSLILGVCA 602

Query: 742 GIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYA 801
            I              +P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y 
Sbjct: 603 SI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYP 648

Query: 802 QRPMVESKTIRITNFHKLPAG 822
           Q+P+V ++ +   +F +LPAG
Sbjct: 649 QKPLVTTRAMEHLHFRQLPAG 669



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 61/130 (46%), Gaps = 17/130 (13%)

Query: 443 KRFQTY---KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDML 499
           KR QT    K+  +  A++ L    + H+ V       KA Y   +I R++L        
Sbjct: 215 KRGQTVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPE 274

Query: 500 DDRDYYGNKRLELAGSLLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVS 545
           DDRD+YGNKRL+LAG LL  +F  +F++   ++           K+ NL   +    + S
Sbjct: 275 DDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITS 334

Query: 546 GWWFELKYGN 555
           G  + L  GN
Sbjct: 335 GLKYSLATGN 344


>gi|385805646|ref|YP_005842044.1| RNA Polymerase [Fervidicoccus fontis Kam940]
 gi|383795509|gb|AFH42592.1| RNA Polymerase [Fervidicoccus fontis Kam940]
          Length = 1141

 Score =  215 bits (547), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 109/266 (40%), Positives = 163/266 (61%), Gaps = 11/266 (4%)

Query: 915  VPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFH 974
            +PY  HNQ+PRNTYQ AM KQA+G    N   R D+  + L + ++P+V++K + +  ++
Sbjct: 674  IPYIEHNQSPRNTYQSAMVKQALGLYAANFNVRTDSRGHILHHPEKPLVQTKPLEVIRYN 733

Query: 975  KLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRIL 1034
            + PAGQNA +A+MSY+GY+IEDALI NK+S++RGF R   +R      K+YP    D+I 
Sbjct: 734  EKPAGQNAVVAIMSYTGYNIEDALIFNKSSVERGFMRSTFFRLYSTEEKKYPGGQEDKIE 793

Query: 1035 GPLLEADTRKPVYR----HRALDQDGIVAPGEQICERQVLVNKSMPTISVSAI---SMAT 1087
             P  EA  +  +YR    ++ LD DGI++P  ++ + + L+ K+ P   +          
Sbjct: 794  VP--EAGVK--IYRGFEVYKKLDPDGIISPETEVADGEALIGKTSPPRFLEEFKEYGFGA 849

Query: 1088 PEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
               K+  V+ +      ++ V +S   E   L+K+ +R  R PEIGDKF+SRHGQKGVIG
Sbjct: 850  SVRKDTSVTIRYGEKGVVDSVFISETQEGDKLVKVRVRDYRIPEIGDKFASRHGQKGVIG 909

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            +++ Q DMP+ E GI PDII+NPH  
Sbjct: 910  MLIPQYDMPYTEEGIVPDIIINPHAF 935



 Score =  188 bits (477), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 90/190 (47%), Positives = 127/190 (66%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            K+  V+ +      ++ V +S   E   L+K+ +R  R PEIGDKF+SRHGQKGVIG+++
Sbjct: 853  KDTSVTIRYGEKGVVDSVFISETQEGDKLVKVRVRDYRIPEIGDKFASRHGQKGVIGMLI 912

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             Q DMP+ E GI PDII+NPH +PSRMT+G+L+E+LAGK   + G   + T F    + +
Sbjct: 913  PQYDMPYTEEGIVPDIIINPHAFPSRMTLGQLLEMLAGKTAALLGKTVDATPFSKEPVEE 972

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
            ++ +L++ GY+  G+++ Y G TGE +   I  G VYYQ+L HMV DK HARSRGP  +L
Sbjct: 973  IRMKLMKKGYSPDGREVMYDGRTGEIIGVPIMIGIVYYQRLHHMVADKFHARSRGPVQLL 1032

Query: 1363 TRQPTGRRWK 1372
            TRQPT  R +
Sbjct: 1033 TRQPTEGRAR 1042



 Score = 95.1 bits (235), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/133 (36%), Positives = 80/133 (60%), Gaps = 7/133 (5%)

Query: 174 ADKIIPKIKAAQFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYIS 233
           A+K++ + K  +F I + +R D +T  +  A+ TG W        + GV+Q+L R +++S
Sbjct: 386 AEKVLTRSK--RFKISSIVRSDVMTERIRHALATGTWV-----GGKTGVSQLLDRTNWMS 438

Query: 234 GLGMMTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTEND 293
            L  + R+ S   +++ +   R L G+QWG +CP +TPEG  CGLVKNL+L+T+IT    
Sbjct: 439 MLSHLRRVVSPLSRSQPLFKARDLHGTQWGRMCPFETPEGPNCGLVKNLSLLTYITVGIS 498

Query: 294 EKNMLKIMYNIGI 306
           EK +   +Y +G+
Sbjct: 499 EKKVENQLYKLGV 511



 Score = 90.5 bits (223), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 51/142 (35%), Positives = 76/142 (53%), Gaps = 17/142 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSES---GIRPGVTTHLEIAPFTLLGVCAGIE 744
           G K F D + EGKIEYLD  E  +++IA+  S   G      THLE+    + GV A   
Sbjct: 615 GEKTFSDLVKEGKIEYLDAEEEENAYIALDPSDLLGPNGKEYTHLELWTAGIFGVAAST- 673

Query: 745 LLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRP 804
                        +PY  HNQ+PRNTYQ AM KQA+G    N   R D+  + L + ++P
Sbjct: 674 -------------IPYIEHNQSPRNTYQSAMVKQALGLYAANFNVRTDSRGHILHHPEKP 720

Query: 805 MVESKTIRITNFHKLPAGKCQI 826
           +V++K + +  +++ PAG+  +
Sbjct: 721 LVQTKPLEVIRYNEKPAGQNAV 742



 Score = 45.4 bits (106), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 36/62 (58%)

Query: 340 EVCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIML 399
           EV KP   E+     + TP E R+R++TY++P+ ++I         ++  + IG +PIM+
Sbjct: 81  EVLKPVSREADGSEVEITPFEARVRNITYASPMYLEITLVENGVESIKDKVYIGDLPIMI 140

Query: 400 QS 401
           +S
Sbjct: 141 KS 142


>gi|337283877|ref|YP_004623351.1| DNA-directed RNA polymerase subunit beta [Pyrococcus yayanosii CH1]
 gi|334899811|gb|AEH24079.1| DNA-directed RNA polymerase subunit beta [Pyrococcus yayanosii CH1]
          Length = 1118

 Score =  215 bits (547), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 108/264 (40%), Positives = 161/264 (60%), Gaps = 4/264 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            LVPYP HN APRNTY   M KQ++G    N + R+DT  + L Y Q P+V S+ ++   +
Sbjct: 651  LVPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLLHYPQVPLVNSRIMKAVGY 710

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
               PAGQN  +A+++Y GY++EDA+I+NKAS++RG  R   +R  +   K+Y     DR 
Sbjct: 711  EDRPAGQNFVVAILAYQGYNMEDAIIINKASIERGLARSTFFRTYEAEEKKYLGGQTDRF 770

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAI----SMATPE 1089
              P       +    +R LD+DG++ P  ++  + VL+ ++ P   +        M   E
Sbjct: 771  EIPDPTVRGYRGEKYYRNLDEDGLIFPESKVDGKDVLIGRTSPPRFLEERGGLGGMILQE 830

Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             +E  V+ + S    ++KV+++   +   L+K+ +R  R PE+GDKF+SRHGQKGVIGLI
Sbjct: 831  RRETSVAVRPSEKGIVDKVIITETGDGTKLVKVTVRDLRIPELGDKFASRHGQKGVIGLI 890

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
            V QEDMP+ ESGI PD+I+NPHG+
Sbjct: 891  VPQEDMPWTESGIVPDLIVNPHGI 914



 Score =  201 bits (511), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 103/208 (49%), Positives = 140/208 (67%)

Query: 1163 CPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRP 1222
             P   +   G  G   + E +E  V+ + S    ++KV+++   +   L+K+ +R  R P
Sbjct: 812  SPPRFLEERGGLGGMILQERRETSVAVRPSEKGIVDKVIITETGDGTKLVKVTVRDLRIP 871

Query: 1223 EIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKA 1282
            E+GDKF+SRHGQKGVIGLIV QEDMP+ ESGI PD+I+NPHG PSRMTVG+LIE + GK 
Sbjct: 872  ELGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLIEAIGGKV 931

Query: 1283 GLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQK 1342
              ++G   +GTAF G     +++EL   G+ + G+++ Y GITG+ L A I+ G +YYQ+
Sbjct: 932  ASLKGRRVDGTAFIGEPEERLRKELEELGFKHNGREVMYDGITGKRLVADIFIGVIYYQR 991

Query: 1343 LKHMVQDKIHARSRGPRVVLTRQPTGRR 1370
            L HMV DKIHARSRGP  VLT+QPT  R
Sbjct: 992  LHHMVADKIHARSRGPVQVLTKQPTEGR 1019



 Score =  103 bits (256), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 55/146 (37%), Positives = 83/146 (56%), Gaps = 9/146 (6%)

Query: 188 IVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEK 247
           I N +R D +T  +  ++ TG W        R GV+Q+L R +Y+S L  + R+ S  ++
Sbjct: 391 IRNSIRPDVLTERIEHSLATGAWP-----GGRTGVSQLLDRTNYMSTLSHLRRVTSPLDR 445

Query: 248 TRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIE 307
            +     R L G+ WG +CP++TPEG  CGLVKNLALM  ITT   EK + + +  +GI 
Sbjct: 446 EQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITTAVPEKEVREYLMKLGII 505

Query: 308 HIAMFNGEELSSPGVYLVFVNGILAG 333
            I +       SP ++ V++NG+L G
Sbjct: 506 PIEVRR----PSPELWRVYLNGVLIG 527



 Score = 83.6 bits (205), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 48/136 (35%), Positives = 71/136 (52%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G  ++ D +  G IEYLD  E  ++++A+    +     THLE+ P  +LG+ A      
Sbjct: 597 GRLKWSDLIKMGIIEYLDAEEEENAYVAMWPWEVTEE-HTHLELMPAAILGLPAS----- 650

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    LVPYP HN APRNTY   M KQ++G    N + R+DT  + L Y Q P+V 
Sbjct: 651 ---------LVPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLLHYPQVPLVN 701

Query: 808 SKTIRITNFHKLPAGK 823
           S+ ++   +   PAG+
Sbjct: 702 SRIMKAVGYEDRPAGQ 717



 Score = 43.1 bits (100), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 2/67 (2%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVD-IEYTRGSQRVVRSDLVIGRMPIML 399
           V +PE +E+    +   P + R+R+LTYSAP+ ++ I   +G ++    ++ IG +PIML
Sbjct: 69  VGEPEFQEAHGQRKPLYPMDARIRNLTYSAPLYLEMIPVVKGIEQEP-VEVRIGELPIML 127

Query: 400 QSSKCVL 406
           +S  C L
Sbjct: 128 KSKVCRL 134



 Score = 42.7 bits (99), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 37/59 (62%), Gaps = 1/59 (1%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           D W ++ S+ +EKGLV+ H+DS++ FI   +++++     +  D+ P F +K+  I VG
Sbjct: 13  DLWVVMESYWQEKGLVRQHLDSYNAFIERGLQEVVNEFGGVKPDI-PDFEVKFGRIRVG 70



 Score = 41.2 bits (95), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 2/57 (3%)

Query: 478 KAMYLAVMIRRMV-LALSDPDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
           KA YL +M  +++ L+L   D  DD+D+Y NKRL LAG LL  +F   F +   +++
Sbjct: 313 KAYYLGMMALKVIELSLGRRDE-DDKDHYANKRLRLAGDLLKDLFRVAFAQLVKDIQ 368


>gi|110734396|gb|ABG88853.1| RNA polymerase II second largest subunit [Rhamphospora nymphaeae]
          Length = 645

 Score =  215 bits (547), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 105/263 (39%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DT+   L Y Q+P+  + ++    F
Sbjct: 354  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFQTRMDTMANILYYPQKPLATTMSMEHLRF 413

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++++DRG  R L YR    + K+      +  
Sbjct: 414  RELPAGQNAIVAILCYSGYNQEDSVIMNQSAIDRGLFRSLYYRTYMDMEKKVGVVDVETF 473

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P+     R     +  +D DG+ APG ++    +++ K+ P    S    +   T   
Sbjct: 474  EKPMRHTTIRLKRGTYDKIDDDGLCAPGTRVSGEDIIIGKTTPLPPDSEELGLRSKTHSK 533

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VLV++N++    +K+ +R TR P++GDKF+SRHGQKG IG+  
Sbjct: 534  RDVSTPLKSTEAGIVDQVLVTTNADGNKFVKVRVRSTRVPQVGDKFASRHGQKGTIGITY 593

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF+  GI PDII+NPH +
Sbjct: 594  RQEDMPFSVQGITPDIIINPHAI 616



 Score =  115 bits (287), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 51/111 (45%), Positives = 74/111 (66%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VLV++N++    +K+ +R TR P++GDKF+SRHGQKG IG+  
Sbjct: 534  RDVSTPLKSTEAGIVDQVLVTTNADGNKFVKVRVRSTRVPQVGDKFASRHGQKGTIGITY 593

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGT 1293
             QEDMPF+  GI PDII+NPH  PSRMT+G L+E L  K   + G   + T
Sbjct: 594  RQEDMPFSVQGITPDIIINPHAIPSRMTIGHLVECLLSKVSTLSGQEGDAT 644



 Score =  112 bits (281), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 53/149 (35%), Positives = 91/149 (61%), Gaps = 4/149 (2%)

Query: 186 FDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQ 244
           F + + ++  TITN L  ++ TGNW   ++F   + GV+QVL+R ++ S L  + R N+ 
Sbjct: 41  FHLTSAVKSSTITNGLKYSLATGNWGDQKKFMQAKAGVSQVLNRYTFASTLSHLRRCNTP 100

Query: 245 FEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNI 304
             +  K++ PR L  + WGM+CP++TPEG+ACGLVKNL+LM+ I+  +    +++ +   
Sbjct: 101 IGRDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSMISVGSPSAPIIEFLEEF 160

Query: 305 GIEHIAMFNGEELSSPGVYLVFVNGILAG 333
           G++++      ++S      VFVNG+  G
Sbjct: 161 GLDNLV---DTQVSDSKATKVFVNGVWVG 186



 Score = 91.3 bits (225), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 47/111 (42%), Positives = 61/111 (54%), Gaps = 14/111 (12%)

Query: 716 VSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAM 775
           VS     P   TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AM
Sbjct: 327 VSPHTFAPNTWTHCEIHPAMILGICASI--------------IPFPDHNQSPRNTYQSAM 372

Query: 776 GKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
           GKQAMG    N Q R+DT+   L Y Q+P+  + ++    F +LPAG+  I
Sbjct: 373 GKQAMGIYLTNFQTRMDTMANILYYPQKPLATTMSMEHLRFRELPAGQNAI 423


>gi|300394708|gb|ADK11892.1| DNA-directed RNA polymerase II subunit two, partial [Hydnomerulius
            pinastri]
          Length = 358

 Score =  215 bits (547), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 18   IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKF 77

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 78   RELPAGQNAIVAILCYSGYNQEDSVIMNQSSVDRGLFRSIYYRSYMDLEKKSGVQQLEEF 137

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  ++ DG++APG  +    +++ K+ P    S        T   
Sbjct: 138  EKPTRDTTLRMKHGTYDKIEDDGLIAPGTGVSGEDIIIGKTAPIPPDSEELGQRTRTHTR 197

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 198  RDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITY 257

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 258  RQEDMPFTAEGIVPDIIINPHAI 280



 Score =  153 bits (387), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 73/161 (45%), Positives = 102/161 (63%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 198  RDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITY 257

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 258  RQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVES 317

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKL 1343
            V   L + GY  +G ++ Y G TG+ L+A +Y GP YYQ+L
Sbjct: 318  VSTFLRQKGYQSRGLEVMYHGHTGKKLQAQVYLGPTYYQRL 358



 Score = 87.0 bits (214), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 55/156 (35%), Positives = 81/156 (51%), Gaps = 22/156 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LGVCA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 2   THCEIHPSMILGVCASI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYLTN 47

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQISPGGAEELTARESCHEVLKI 846
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I    A    +  +  + + +
Sbjct: 48  FLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIV---AILCYSGYNQEDSVIM 104

Query: 847 ISFSISVAVFDSVWLG-----DVKQGVHQLSEEKEP 877
              S+   +F S++       + K GV QL E ++P
Sbjct: 105 NQSSVDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKP 140


>gi|40643998|emb|CAD91516.1| RNA polymerase II second largest subunit [Garrya elliptica]
          Length = 576

 Score =  215 bits (547), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 111/270 (41%), Positives = 167/270 (61%), Gaps = 19/270 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 197  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 256

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L +R+ +           ++ 
Sbjct: 257  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR---------DEEKK 307

Query: 1034 LGPLLEADTRKPV------YRHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            +G L++ D  +P        RH +   LD DG+  PG ++    V++ K+ P     +  
Sbjct: 308  MGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDDSQG 367

Query: 1085 MATPEYK-EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1143
             A+   K +   S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQK
Sbjct: 368  QASRYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQK 427

Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G IG+   QEDMP+   GI PDII+NPH +
Sbjct: 428  GTIGMTYTQEDMPWTLEGITPDIIVNPHAI 457



 Score =  180 bits (456), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 87/184 (47%), Positives = 119/184 (64%)

Query: 1187 VSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQED 1246
             S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG IG+   QED
Sbjct: 379  TSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTIGMTYTQED 438

Query: 1247 MPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEE 1306
            MP+   GI PDII+NPH  PSRMT+G+LIE + GK     G   + T F    + ++ + 
Sbjct: 439  MPWTLEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 498

Query: 1307 LIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQP 1366
            L + GY  +G +  Y+G TG  L A I+ GP YYQ+LKHMV DKIH+R RGP  +LTRQP
Sbjct: 499  LHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP 558

Query: 1367 TGRR 1370
               R
Sbjct: 559  AEGR 562



 Score =  100 bits (248), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 56/141 (39%), Positives = 78/141 (55%), Gaps = 24/141 (17%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVS-----ESGIRP-----GVTTHLEIAPFTLLGVCA 741
           + D + +G IEY+D  E   + I+++      + + P        TH EI P  +LGVCA
Sbjct: 136 WHDLVAKGFIEYIDTEEEETTMISMTINDLLSAKLNPEDAYSDTYTHCEIHPSLILGVCA 195

Query: 742 GIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYA 801
            I              +P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y 
Sbjct: 196 SI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYP 241

Query: 802 QRPMVESKTIRITNFHKLPAG 822
           Q+P+V ++ +   +F +LPAG
Sbjct: 242 QKPLVTTRAMEHLHFRQLPAG 262



 Score = 42.7 bits (99), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 35/64 (54%), Gaps = 8/64 (12%)

Query: 274 EACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMFNGEELSS---PGVYLVFVNGI 330
           +ACGLVKNLALM +IT  +    +L+ +   G E     N EE+S    P    +FVNG 
Sbjct: 1   QACGLVKNLALMVYITVGSAAYPILEFLEEWGTE-----NFEEISPAVIPQATKIFVNGC 55

Query: 331 LAGI 334
             GI
Sbjct: 56  WVGI 59


>gi|321257963|ref|XP_003193762.1| DNA-dependent RNA polymerase II RPB140 [Cryptococcus gattii WM276]
 gi|317460232|gb|ADV21975.1| DNA-dependent RNA polymerase II RPB140, putative [Cryptococcus gattii
            WM276]
          Length = 1193

 Score =  215 bits (547), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 111/269 (41%), Positives = 167/269 (62%), Gaps = 12/269 (4%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DT++  L Y Q+P+  ++++    F
Sbjct: 725  IIPFPDHNQSPRNTYQSAMGKQAMGVCLTNYQLRMDTMVNVLYYPQKPLATTRSMEYLKF 784

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRN------SKCVLKQYPN 1027
             +LPAGQNA +A+M YSGY+ ED++IMN++S+DRG  R L +R+       K ++K    
Sbjct: 785  SELPAGQNAIVAIMCYSGYNQEDSVIMNQSSIDRGLFRSLYFRSYTDTEKMKGMVKAETI 844

Query: 1028 QTHDRILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS-AISMA 1086
            +  DR     ++  T     R+  LD DG+VAPG  +    +L+ K+ P    S  +   
Sbjct: 845  EKPDRNETLRMKHGTSD---RYAKLDVDGLVAPGTNVNGDDILIGKTAPLPEDSEELGQR 901

Query: 1087 TPEY--KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKG 1144
            T  +  +++    K +    +++V++S+N E    +K+ +R TR P+IGDKF+SRHGQKG
Sbjct: 902  TQLHTKRDISTPLKSTEQGVVDQVMLSTNGEGNMFVKIRVRSTRVPQIGDKFASRHGQKG 961

Query: 1145 VIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
             IG+   QEDMPF   G+ PDII+NPH +
Sbjct: 962  TIGITYRQEDMPFTAEGLVPDIIINPHAI 990



 Score =  187 bits (476), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 97/239 (40%), Positives = 140/239 (58%), Gaps = 8/239 (3%)

Query: 1137 SSRHGQKGVIGLI-----VEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKG 1191
            S R+ +  V GL+     V  +D+   ++   P+   +   L    ++   +++    K 
Sbjct: 860  SDRYAKLDVDGLVAPGTNVNGDDILIGKTAPLPE---DSEELGQRTQLHTKRDISTPLKS 916

Query: 1192 SVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNE 1251
            +    +++V++S+N E    +K+ +R TR P+IGDKF+SRHGQKG IG+   QEDMPF  
Sbjct: 917  TEQGVVDQVMLSTNGEGNMFVKIRVRSTRVPQIGDKFASRHGQKGTIGITYRQEDMPFTA 976

Query: 1252 SGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHG 1311
             G+ PDII+NPH  PSRMT+G L+E L  K   + G   + T F    +  V + L   G
Sbjct: 977  EGLVPDIIINPHAIPSRMTIGHLVECLLSKVSTLTGAEGDATPFTELTVEAVSKVLRAKG 1036

Query: 1312 YNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRR 1370
            Y  +G ++ Y G TG  L+A +Y GP YYQ+LKHMV DKIHAR+RGP  +LTRQP   R
Sbjct: 1037 YQSRGFEVLYHGHTGRKLQAQVYFGPTYYQRLKHMVDDKIHARARGPLQILTRQPVEGR 1095



 Score =  115 bits (288), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 57/150 (38%), Positives = 90/150 (60%), Gaps = 6/150 (4%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQ 244
           +F +   +R +T+T+ L  A+ TGNW  R     R GV+QVL+R ++ S L  + R N+ 
Sbjct: 416 EFALNMAIRPNTVTDGLKYALATGNWGKR--DNTRAGVSQVLNRYTFASTLSHLRRTNTP 473

Query: 245 FEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNI 304
             +  K + PR L  + WGM+CP++TPEG ACGLVKNLALM++I+  +    +++ +   
Sbjct: 474 IGRDSKAAKPRQLHNTHWGMVCPAETPEGSACGLVKNLALMSYISVGSYSAPVMEFLEEW 533

Query: 305 GIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
           G+E ++ +      +P    VFVNG+  GI
Sbjct: 534 GLEDLSEYQ----DAPTATKVFVNGVWMGI 559



 Score = 92.4 bits (228), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/100 (45%), Positives = 61/100 (61%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH+EI P  +LGVCA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 709 THMEIHPSMILGVCASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVCLTN 754

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
            Q R+DT++  L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 755 YQLRMDTMVNVLYYPQKPLATTRSMEYLKFSELPAGQNAI 794


>gi|315041535|ref|XP_003170144.1| DNA-directed RNA polymerase [Arthroderma gypseum CBS 118893]
 gi|311345178|gb|EFR04381.1| DNA-directed RNA polymerase [Arthroderma gypseum CBS 118893]
          Length = 1258

 Score =  215 bits (547), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 108/286 (37%), Positives = 169/286 (59%), Gaps = 3/286 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N + R++T+   L Y Q+P+  ++++    F
Sbjct: 787  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFEQRMETMANILYYPQKPLATTRSMEFLKF 846

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR      K       +R 
Sbjct: 847  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMIGLTVVERF 906

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAISMATPEYKE 1092
              P+     R     +  +D DGIV+PG ++    +++ K+ P       +   T ++ +
Sbjct: 907  EKPMRSDTLRMKHGTYDKVDDDGIVSPGVRVSGEDIIIGKTSPLAPEAEELGQRTKQHTK 966

Query: 1093 VPVS--YKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            + VS   + +    +++VLVS++++D   +K+ +R T+ P+IGDKF+SRHGQKG IG+  
Sbjct: 967  LDVSTPLRSTESGIVDQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITY 1026

Query: 1151 EQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSY 1196
              EDMPF   G+ PD+I+NPH +     I    E  +S   S+  Y
Sbjct: 1027 RHEDMPFTREGVTPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGY 1072



 Score =  180 bits (456), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 84/189 (44%), Positives = 119/189 (62%)

Query: 1184 EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVE 1243
            +V    + +    +++VLVS++++D   +K+ +R T+ P+IGDKF+SRHGQKG IG+   
Sbjct: 968  DVSTPLRSTESGIVDQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYR 1027

Query: 1244 QEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDV 1303
             EDMPF   G+ PD+I+NPH  PSRMT+  LIE    K   + G   + T F    +  V
Sbjct: 1028 HEDMPFTREGVTPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGYEGDATPFTDVTVDSV 1087

Query: 1304 QEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLT 1363
               L  HGY  +G ++ Y+G TG  L A ++ GP YYQ+L+HMV DKIHAR+RGP  +LT
Sbjct: 1088 SSLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHARARGPTQILT 1147

Query: 1364 RQPTGRRWK 1372
            RQP   R +
Sbjct: 1148 RQPVEGRAR 1156



 Score =  109 bits (273), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 56/144 (38%), Positives = 84/144 (58%), Gaps = 3/144 (2%)

Query: 192 MRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRK 250
           ++  T+T  L  A+ TGNW   ++    + GV+QVL+R +Y S L  + R N+   +  K
Sbjct: 470 VKASTLTGGLKYALATGNWGEQKKAASSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGK 529

Query: 251 VSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIA 310
           ++ PR L  + WG++CP++TPEG+ACGLVKNLALM  IT     + ++  M    +E + 
Sbjct: 530 IAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCCITVGTPSEPIIDFMIQRNMEVLE 589

Query: 311 MFNGEELSSPGVYLVFVNGILAGI 334
            F  E   SP    VFVNG+  G+
Sbjct: 590 EF--EPQVSPNSTKVFVNGVWVGV 611



 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/100 (42%), Positives = 59/100 (59%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 771 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 816

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
            + R++T+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 817 FEQRMETMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 856



 Score = 52.8 bits (125), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 44/78 (56%), Gaps = 2/78 (2%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMV-LALSDPDMLDDRDYYGNKRLELAG 514
           ARD +    + HI         KA +L  M+ R++  AL   D +DDRD++G KRL+LAG
Sbjct: 374 ARDIIQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRD-VDDRDHFGKKRLDLAG 432

Query: 515 SLLSLMFEDVFKRFNSEL 532
            LL+ +F  +F R   +L
Sbjct: 433 PLLANLFRVLFMRLTKDL 450


>gi|55583688|gb|AAV53363.1| RNA polymerase II second largest subunit [Grifola frondosa]
          Length = 719

 Score =  215 bits (547), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 351  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLRF 410

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 411  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSMYYRSYMDLEKKSGVQQLEEF 470

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 471  EKPTRDTTLRMKHGTYDKLEDDGLIAPGTGVNGEDIIIGKTAPIPPDSEELGQRTRTHTR 530

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++N+E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 531  RDVSTPLKSTESGIIDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 590

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 591  RQEDMPFTAEGITPDIIINPHAI 613



 Score =  192 bits (488), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 91/193 (47%), Positives = 123/193 (63%)

Query: 1178 RITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV 1237
            R    ++V    K +    +++VL+++N+E    +K+ +R TR P+IGDKF+SRHGQKG 
Sbjct: 526  RTHTRRDVSTPLKSTESGIIDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGT 585

Query: 1238 IGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGG 1297
            IG+   QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F  
Sbjct: 586  IGITYRQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTD 645

Query: 1298 TKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRG 1357
              +  V   L + GY  +G ++ Y G TG  L+A +Y GP YYQ+LKHMV DKIH+R+RG
Sbjct: 646  VTVESVSAVLRQRGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMVDDKIHSRARG 705

Query: 1358 PRVVLTRQPTGRR 1370
            P  +LTRQP   R
Sbjct: 706  PVQILTRQPVEGR 718



 Score =  109 bits (273), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 94/151 (62%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKM-ERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++ +TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 46  EFNLSLAVKHNTITNGLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNT 105

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNL+LM+ I+  +    +++ +  
Sbjct: 106 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSCISVGSLSAPVIEFLEE 165

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E  ++      ++P    VFVNG+  G+
Sbjct: 166 WGLE--SLEENAHSATPCTK-VFVNGVWMGV 193



 Score = 90.1 bits (222), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 60/171 (35%), Positives = 80/171 (46%), Gaps = 48/171 (28%)

Query: 687 LGFKRFDDFLYEGKIEYLDVNE---------------------GNDSHIAVSESGIRPGV 725
           LG+K +D+ + +G IE LD  E                     G D H   +E    PG 
Sbjct: 267 LGYK-WDNLIKDGVIELLDAEEEETVMICMTPDDLENSRLQASGVDPH--ANEGEFDPGA 323

Query: 726 T----------THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAM 775
                      TH EI P  +LGVCA I              +P+P HNQ+PRNTYQ AM
Sbjct: 324 RLKAPTNAHTWTHCEIHPSMILGVCASI--------------IPFPDHNQSPRNTYQSAM 369

Query: 776 GKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
           GKQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 370 GKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNAI 420


>gi|296818239|ref|XP_002849456.1| DNA-dependent RNA polymerase II RPB140 [Arthroderma otae CBS 113480]
 gi|238839909|gb|EEQ29571.1| DNA-dependent RNA polymerase II RPB140 [Arthroderma otae CBS 113480]
          Length = 1258

 Score =  215 bits (547), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 108/286 (37%), Positives = 169/286 (59%), Gaps = 3/286 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N + R++T+   L Y Q+P+  ++++    F
Sbjct: 787  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFEQRMETMANILYYPQKPLATTRSMEFLKF 846

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR      K       +R 
Sbjct: 847  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMVGLTVVERF 906

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAISMATPEYKE 1092
              P+     R     +  +D DGIV+PG ++    +++ K+ P       +   T ++ +
Sbjct: 907  EKPMRSDTLRMKHGTYDKVDDDGIVSPGVRVSGEDIIIGKTSPLAPEAEELGQRTKQHTK 966

Query: 1093 VPVS--YKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            + VS   + +    +++VLVS++++D   +K+ +R T+ P+IGDKF+SRHGQKG IG+  
Sbjct: 967  LDVSTPLRSTESGIVDQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITY 1026

Query: 1151 EQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSY 1196
              EDMPF   G+ PD+I+NPH +     I    E  +S   S+  Y
Sbjct: 1027 RHEDMPFTREGVTPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGY 1072



 Score =  179 bits (455), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 84/189 (44%), Positives = 119/189 (62%)

Query: 1184 EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVE 1243
            +V    + +    +++VLVS++++D   +K+ +R T+ P+IGDKF+SRHGQKG IG+   
Sbjct: 968  DVSTPLRSTESGIVDQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYR 1027

Query: 1244 QEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDV 1303
             EDMPF   G+ PD+I+NPH  PSRMT+  LIE    K   + G   + T F    +  V
Sbjct: 1028 HEDMPFTREGVTPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGYEGDATPFTDVTVDSV 1087

Query: 1304 QEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLT 1363
               L  HGY  +G ++ Y+G TG  L A ++ GP YYQ+L+HMV DKIHAR+RGP  +LT
Sbjct: 1088 SSLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHARARGPTQILT 1147

Query: 1364 RQPTGRRWK 1372
            RQP   R +
Sbjct: 1148 RQPVEGRAR 1156



 Score =  110 bits (274), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 56/144 (38%), Positives = 84/144 (58%), Gaps = 3/144 (2%)

Query: 192 MRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRK 250
           ++  T+T  L  A+ TGNW   ++    + GV+QVL+R +Y S L  + R N+   +  K
Sbjct: 470 VKASTLTGGLKYALATGNWGEQKKAASSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGK 529

Query: 251 VSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIA 310
           ++ PR L  + WG++CP++TPEG+ACGLVKNLALM  IT     + ++  M    +E + 
Sbjct: 530 IAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCCITVGTPSEPIIDFMIQRNMEVLE 589

Query: 311 MFNGEELSSPGVYLVFVNGILAGI 334
            F  E   SP    VFVNG+  G+
Sbjct: 590 EF--EPQVSPNSTKVFVNGVWVGV 611



 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/100 (42%), Positives = 59/100 (59%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 771 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 816

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
            + R++T+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 817 FEQRMETMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 856



 Score = 52.8 bits (125), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 44/78 (56%), Gaps = 2/78 (2%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMV-LALSDPDMLDDRDYYGNKRLELAG 514
           ARD +    + HI         KA +L  M+ R++  AL   D +DDRD++G KRL+LAG
Sbjct: 374 ARDIIQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRD-VDDRDHFGKKRLDLAG 432

Query: 515 SLLSLMFEDVFKRFNSEL 532
            LL+ +F  +F R   +L
Sbjct: 433 PLLANLFRVLFMRLTKDL 450


>gi|63054498|ref|NP_593101.2| RNA polymerase II complex subunit Rpb2 [Schizosaccharomyces pombe
            972h-]
 gi|19862286|sp|Q02061.2|RPB2_SCHPO RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA
            polymerase II subunit 2; Short=RNA polymerase II subunit
            B2; AltName: Full=DNA-directed RNA polymerase II 138 kDa
            polypeptide
 gi|256599716|pdb|3H0G|B Chain B, Rna Polymerase Ii From Schizosaccharomyces Pombe
 gi|256599728|pdb|3H0G|N Chain N, Rna Polymerase Ii From Schizosaccharomyces Pombe
 gi|159883907|emb|CAB86470.2| RNA polymerase II complex subunit Rpb2 [Schizosaccharomyces pombe]
          Length = 1210

 Score =  215 bits (547), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 104/263 (39%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DT+   L Y Q+P+  ++++    F
Sbjct: 744  IIPFPDHNQSPRNTYQSAMGKQAMGVYLTNYQVRMDTMANILYYPQKPLATTRSMEYLKF 803

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN+AS+DRG  R + YR      K+      +  
Sbjct: 804  RELPAGQNAIVAILCYSGYNQEDSIIMNQASIDRGLFRSIFYRTYTDQEKKIGMTVMEEF 863

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPT-ISVSAISMATPEY-- 1090
              P+     R     +  L+ DG++APG ++    +++ K+ P  +    +   T  +  
Sbjct: 864  ERPVRSTTLRMKHGTYDKLEDDGLIAPGTRVSGEDIIIGKTAPIPLDHEELGQRTQLHAK 923

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    + +    +++V+V++N E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 924  RDVSTPLRSTESGIVDQVMVTTNQEGLKFVKVRMRSTRIPQIGDKFASRHGQKGTIGMTY 983

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
              EDMPF+  GI PDII+NPH +
Sbjct: 984  RHEDMPFSAQGIVPDIIINPHAI 1006



 Score =  180 bits (456), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 85/190 (44%), Positives = 119/190 (62%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    + +    +++V+V++N E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 924  RDVSTPLRSTESGIVDQVMVTTNQEGLKFVKVRMRSTRIPQIGDKFASRHGQKGTIGMTY 983

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
              EDMPF+  GI PDII+NPH  PSRMTV  L+E    K   + G   + T F    +  
Sbjct: 984  RHEDMPFSAQGIVPDIIINPHAIPSRMTVAHLVECQLSKVSALSGFEGDATPFTDVTVEA 1043

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
            V + L  HG+  +G ++ Y G TG  L A ++ GP YYQ+LKH+V DKIHAR+RGP  +L
Sbjct: 1044 VSKLLRSHGFQSRGFEVMYHGHTGRKLVAQVFLGPTYYQRLKHLVDDKIHARARGPVQIL 1103

Query: 1363 TRQPTGRRWK 1372
            TRQP   R +
Sbjct: 1104 TRQPVEGRSR 1113



 Score =  117 bits (292), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 95/151 (62%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++ + ITN L  ++ TGNW   +R  + R GV+QVL+R ++ S L  + R N+
Sbjct: 427 EFNLTLAVKSNIITNGLRYSLATGNWGDQKRSMVNRVGVSQVLNRYTFASTLSHLRRTNT 486

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNL+LM++++  +    +++ +  
Sbjct: 487 PIGRDGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSYVSVGSPSAPIIEFLEE 546

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E +  +N    +SP    VFVNG+  G+
Sbjct: 547 WGLETLEDYNPS--ASPNATKVFVNGVWLGV 575



 Score = 86.7 bits (213), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 55/156 (35%), Positives = 75/156 (48%), Gaps = 42/156 (26%)

Query: 699 GKIEYLDVNEGNDSHIAVS----------ESG------------IRPG------VTTHLE 730
           G IEYLD  E     IA+S          ++G            ++P         TH E
Sbjct: 672 GLIEYLDAEEEETVMIAMSPEDLEASRQMQAGYEVKEELDPAQRVKPAPNPHVHAWTHCE 731

Query: 731 IAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNR 790
           I P  +LG+ A I              +P+P HNQ+PRNTYQ AMGKQAMG    N Q R
Sbjct: 732 IHPAMILGILASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVYLTNYQVR 777

Query: 791 IDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
           +DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 778 MDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAI 813



 Score = 57.4 bits (137), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 56/114 (49%), Gaps = 14/114 (12%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A D L    + HI  +      KA +L  MI RM+L   +    DDRD++G KRL+LAG 
Sbjct: 338 AHDILQKELLPHITTMEGFETRKAFFLGYMIHRMLLCALERREPDDRDHFGKKRLDLAGP 397

Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLSGVVN---LVSGWWFELKYGN 555
           LL+ +F  +F++   ++           +E NL+  V    + +G  + L  GN
Sbjct: 398 LLASLFRMLFRKMTRDVYKYMQKCVETNREFNLTLAVKSNIITNGLRYSLATGN 451



 Score = 41.6 bits (96), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 17/83 (20%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIE-----------------YTRGSQ 383
           + +P + E+   T    P E RLR+LTYS+P+ VD+                  +    +
Sbjct: 84  LSRPTMTEADGSTTTMFPQEARLRNLTYSSPLYVDMRKKVMVAADSNVPIGEEEWLVEEE 143

Query: 384 RVVRSDLVIGRMPIMLQSSKCVL 406
               S + IG++PIML+S+ C+L
Sbjct: 144 DEEPSKVFIGKIPIMLRSTFCIL 166


>gi|300394678|gb|ADK11877.1| DNA-directed RNA polymerase II subunit two, partial [Athelia sp.
            FP-133442]
          Length = 674

 Score =  215 bits (547), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 350  IIPFPDHNQSPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKF 409

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 410  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEF 469

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  ++ DG++APG  +    +++ K+ P    S        T   
Sbjct: 470  EKPTRDNTLRMKHGTYDKIEDDGLIAPGTVVSGEDIIIGKTAPIPPDSEELGQRTRTHTR 529

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 530  RDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRATRIPQIGDKFASRHGQKGTIGITY 589

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 590  RQEDMPFTAEGIVPDIIINPHAI 612



 Score =  134 bits (337), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 76/211 (36%), Positives = 112/211 (53%), Gaps = 11/211 (5%)

Query: 1124 LRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESGICPDIIMNPHGLKG 1175
            L +  +P   +    +HG        G+I  G +V  ED+   ++   P    +   L  
Sbjct: 466  LEEFEKPTRDNTLRMKHGTYDKIEDDGLIAPGTVVSGEDIIIGKTAPIPP---DSEELGQ 522

Query: 1176 CDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1235
              R    ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQK
Sbjct: 523  RTRTHTRRDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRATRIPQIGDKFASRHGQK 582

Query: 1236 GVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAF 1295
            G IG+   QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F
Sbjct: 583  GTIGITYRQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPF 642

Query: 1296 GGTKLVDVQEELIRHGYNYQGKDIFYSGITG 1326
                +  V   L + GY  +G ++ Y G +G
Sbjct: 643  TDLTVESVSTFLRQKGYQSRGLEVMYHGHSG 673



 Score =  109 bits (273), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 90/151 (59%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKM-ERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 43  EFNLSLAVKHQTITNGLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNT 102

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM  I+  +    +++ +  
Sbjct: 103 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMACISVGSLSAPVIEFLEE 162

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E +        SS     VFVNG+  G+
Sbjct: 163 WGLESL---EENAHSSIPCTKVFVNGVWMGV 190



 Score = 88.2 bits (217), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 47/121 (38%), Positives = 65/121 (53%), Gaps = 14/121 (11%)

Query: 706 VNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQ 765
            N+G     A  ++G      TH EI P  +LG+CA I              +P+P HNQ
Sbjct: 313 ANDGEFDPAARLKAGSDAHTWTHCEIHPSMILGICASI--------------IPFPDHNQ 358

Query: 766 APRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQ 825
           +PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  
Sbjct: 359 SPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNA 418

Query: 826 I 826
           I
Sbjct: 419 I 419


>gi|218554|dbj|BAA02600.1| RNA polymerase II second largest subunit [Schizosaccharomyces pombe]
          Length = 1210

 Score =  215 bits (547), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 104/263 (39%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DT+   L Y Q+P+  ++++    F
Sbjct: 744  IIPFPDHNQSPRNTYQSAMGKQAMGVYLTNYQVRMDTMANILYYPQKPLATTRSMEYLKF 803

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN+AS+DRG  R + YR      K+      +  
Sbjct: 804  RELPAGQNAIVAILCYSGYNQEDSIIMNQASIDRGLFRSIFYRTYTDQEKKIGMTVMEEF 863

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPT-ISVSAISMATPEY-- 1090
              P+     R     +  L+ DG++APG ++    +++ K+ P  +    +   T  +  
Sbjct: 864  ERPVRSTTLRMKHGTYDKLEDDGLIAPGTRVSGEDIIIGKTAPIPLDHEELGQRTQLHAK 923

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    + +    +++V+V++N E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 924  RDVSTPLRSTESGIVDQVMVTTNQEGLKFVKVRMRSTRIPQIGDKFASRHGQKGTIGMTY 983

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
              EDMPF+  GI PDII+NPH +
Sbjct: 984  RHEDMPFSAQGIVPDIIINPHAI 1006



 Score =  180 bits (456), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 85/190 (44%), Positives = 119/190 (62%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    + +    +++V+V++N E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 924  RDVSTPLRSTESGIVDQVMVTTNQEGLKFVKVRMRSTRIPQIGDKFASRHGQKGTIGMTY 983

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
              EDMPF+  GI PDII+NPH  PSRMTV  L+E    K   + G   + T F    +  
Sbjct: 984  RHEDMPFSAQGIVPDIIINPHAIPSRMTVAHLVECQLSKVSALSGFEGDATPFTDVTVEA 1043

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
            V + L  HG+  +G ++ Y G TG  L A ++ GP YYQ+LKH+V DKIHAR+RGP  +L
Sbjct: 1044 VSKLLRSHGFQSRGFEVMYHGHTGRKLVAQVFLGPTYYQRLKHLVDDKIHARARGPVQIL 1103

Query: 1363 TRQPTGRRWK 1372
            TRQP   R +
Sbjct: 1104 TRQPVEGRSR 1113



 Score =  117 bits (292), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 95/151 (62%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++ + ITN L  ++ TGNW   +R  + R GV+QVL+R ++ S L  + R N+
Sbjct: 427 EFNLTLAVKSNIITNGLRYSLATGNWGDQKRSMVNRVGVSQVLNRYTFASTLSHLRRTNT 486

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNL+LM++++  +    +++ +  
Sbjct: 487 PIGRDGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSYVSVGSPSAPIIEFLEE 546

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E +  +N    +SP    VFVNG+  G+
Sbjct: 547 WGLETLEDYNPS--ASPNATKVFVNGVWLGV 575



 Score = 87.0 bits (214), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 55/156 (35%), Positives = 75/156 (48%), Gaps = 42/156 (26%)

Query: 699 GKIEYLDVNEGNDSHIAVS----------ESG------------IRPG------VTTHLE 730
           G IEYLD  E     IA+S          ++G            ++P         TH E
Sbjct: 672 GLIEYLDAEEEETVMIAMSPEDLEASRQMQAGYEVKEELDPAQRVKPAPNPHVHARTHCE 731

Query: 731 IAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNR 790
           I P  +LG+ A I              +P+P HNQ+PRNTYQ AMGKQAMG    N Q R
Sbjct: 732 IHPAMILGILASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVYLTNYQVR 777

Query: 791 IDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
           +DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 778 MDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAI 813



 Score = 57.4 bits (137), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 56/114 (49%), Gaps = 14/114 (12%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A D L    + HI  +      KA +L  MI RM+L   +    DDRD++G KRL+LAG 
Sbjct: 338 AHDILQKELLPHITTMEGFETRKAFFLGYMIHRMLLCALERREPDDRDHFGKKRLDLAGP 397

Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLSGVVN---LVSGWWFELKYGN 555
           LL+ +F  +F++   ++           +E NL+  V    + +G  + L  GN
Sbjct: 398 LLASLFRMLFRKMTRDVYKYMQKCVETNREFNLTLAVKSNIITNGLRYSLATGN 451



 Score = 41.6 bits (96), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 17/83 (20%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIE-----------------YTRGSQ 383
           + +P + E+   T    P E RLR+LTYS+P+ VD+                  +    +
Sbjct: 84  LSRPTMTEADGSTTTMFPQEARLRNLTYSSPLYVDMRKKVMVAADSNVPIGEEEWLVEEE 143

Query: 384 RVVRSDLVIGRMPIMLQSSKCVL 406
               S + IG++PIML+S+ C+L
Sbjct: 144 DEEPSKVFIGKIPIMLRSTFCIL 166


>gi|40644549|emb|CAD89106.1| RNA polymerase II, second largest subunit [Tephrosia purpurea]
          Length = 550

 Score =  215 bits (547), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 110/270 (40%), Positives = 168/270 (62%), Gaps = 19/270 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 201  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 260

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L +R+ +           ++ 
Sbjct: 261  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR---------DEEKK 311

Query: 1034 LGPLLEADTRKPV------YRHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            +G L++ D  +P        RH +   LD DG+  PG ++    V++ K+ P     A  
Sbjct: 312  MGTLVKEDFCRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQEEAQG 371

Query: 1085 MATP-EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1143
             A+    ++  +S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQK
Sbjct: 372  QASRYTRRDHSISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQK 431

Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G +G+   QEDMP+   GI PDII+NPH +
Sbjct: 432  GTVGMTYTQEDMPWTVEGITPDIIVNPHAI 461



 Score =  160 bits (404), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 75/166 (45%), Positives = 108/166 (65%)

Query: 1187 VSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQED 1246
            +S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   QED
Sbjct: 383  ISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 442

Query: 1247 MPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEE 1306
            MP+   GI PDII+NPH  PSRMT+G+LIE + GK     G   + T F    + ++ + 
Sbjct: 443  MPWTVEGITPDIIVNPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVTVDNISKA 502

Query: 1307 LIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIH 1352
            L + GY  +G +  Y+G TG  L + I+ GP YYQ+LKHMV DKIH
Sbjct: 503  LHKCGYQMRGFETMYNGHTGRRLTSMIFLGPTYYQRLKHMVDDKIH 548



 Score =  103 bits (256), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 57/141 (40%), Positives = 80/141 (56%), Gaps = 24/141 (17%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVS-----ESGIRPG-----VTTHLEIAPFTLLGVCA 741
           + D + +G IEY+D  E   + I+++     ++ + PG       TH EI P  +LGVCA
Sbjct: 140 WHDLVSKGFIEYIDTEEEETTMISMTINDLIQARLNPGEAYSDTYTHCEIHPSLILGVCA 199

Query: 742 GIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYA 801
            I              +P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y 
Sbjct: 200 SI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYP 245

Query: 802 QRPMVESKTIRITNFHKLPAG 822
           Q+P+V ++ +   +F +LPAG
Sbjct: 246 QKPLVTTRAMEHLHFRQLPAG 266



 Score = 49.7 bits (117), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 38/68 (55%), Gaps = 8/68 (11%)

Query: 270 TPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMFNGEELSS---PGVYLVF 326
           TPEG+ACGLVKNLA M +IT  +    +L+ +   G E     N EE+S    P    +F
Sbjct: 1   TPEGQACGLVKNLAXMVYITVGSAASPILEFLEEWGTE-----NFEEISPAVIPQATKIF 55

Query: 327 VNGILAGI 334
           VNG   GI
Sbjct: 56  VNGCWLGI 63


>gi|55584698|gb|AAV53580.1| RNA polymerase II second largest subunit [Rhodocollybia maculata]
          Length = 721

 Score =  215 bits (547), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 346  IIPFPDHNQSPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKF 405

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSG++ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 406  RELPAGQNAIVAILCYSGHNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEF 465

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 466  EKPTRDNTLRMKHGTYDKLEDDGLIAPGTGVLGEDIIIGKTAPIPPDSEELGQRTRTHTR 525

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 526  RDVSTPLKSTESGIVDQVLITTNSEGRKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 585

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 586  RQEDMPFTAEGIVPDIIINPHAI 608



 Score =  189 bits (481), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 91/193 (47%), Positives = 122/193 (63%)

Query: 1178 RITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV 1237
            R    ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG 
Sbjct: 521  RTHTRRDVSTPLKSTESGIVDQVLITTNSEGRKFVKIRVRSTRIPQIGDKFASRHGQKGT 580

Query: 1238 IGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGG 1297
            IG+   QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F  
Sbjct: 581  IGITYRQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTD 640

Query: 1298 TKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRG 1357
              +  V   L   GY  +G ++ + G TG  L+A +Y GP YYQ+LKHMV DKIH+R+RG
Sbjct: 641  LTVESVSTFLRDRGYQSRGLEVMFHGHTGRKLQAQVYLGPTYYQRLKHMVDDKIHSRARG 700

Query: 1358 PRVVLTRQPTGRR 1370
            P  +LTRQP   R
Sbjct: 701  PVQILTRQPVEGR 713



 Score =  115 bits (287), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 58/157 (36%), Positives = 96/157 (61%), Gaps = 6/157 (3%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 39  EFNLALAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT 98

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM  I+  +    +++ +  
Sbjct: 99  PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEE 158

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGITCHHKE 340
            G+E  ++      ++P +  VFVNG+  G+   H+E
Sbjct: 159 WGLE--SLEENAHSTTPTMTKVFVNGVWMGV---HRE 190



 Score = 93.2 bits (230), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 61/176 (34%), Positives = 89/176 (50%), Gaps = 22/176 (12%)

Query: 707 NEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQA 766
           N+G     A  +SGI     TH EI P  +LG+CA I              +P+P HNQ+
Sbjct: 310 NDGEFDPAARLKSGITAHTWTHCEIHPSMILGICASI--------------IPFPDHNQS 355

Query: 767 PRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
           PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 356 PRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAI 415

Query: 827 SPGGAEELTARESCHEVLKIISFSISVAVFDSVWLG-----DVKQGVHQLSEEKEP 877
               A    +  +  + + +   SI   +F S++       + K GV QL E ++P
Sbjct: 416 V---AILCYSGHNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKP 468


>gi|55583700|gb|AAV53369.1| RNA polymerase II second largest subunit [Pluteus romellii]
          Length = 646

 Score =  215 bits (547), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 294  IIPFPDHNQSPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKF 353

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 354  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEF 413

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  E   R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 414  EKPSRETTLRMKHGTYDKLEDDGLIAPGTGVRGEDIIIGKTAPIPPDSEELGQRTRTHTR 473

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 474  RDVSTPLKSTESGIVDQVLLTTNSEGQKFVKVRVRSTRVPQIGDKFASRHGQKGTIGITY 533

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PD+++NPH +
Sbjct: 534  RQEDMPFTAEGIVPDLVINPHAI 556



 Score =  172 bits (437), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 81/178 (45%), Positives = 114/178 (64%)

Query: 1178 RITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV 1237
            R    ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG 
Sbjct: 469  RTHTRRDVSTPLKSTESGIVDQVLLTTNSEGQKFVKVRVRSTRVPQIGDKFASRHGQKGT 528

Query: 1238 IGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGG 1297
            IG+   QEDMPF   GI PD+++NPH  PSRMT+G L+E L  K   + GN  + T F  
Sbjct: 529  IGITYRQEDMPFTAEGIVPDLVINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTD 588

Query: 1298 TKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARS 1355
              +  V   L + GY  +G ++ Y G TG+ L+A +Y GP YYQ+LKHMV DKIH+R+
Sbjct: 589  LTVEAVSSFLRQKGYQSRGLEVMYHGHTGKKLQAQVYLGPTYYQRLKHMVDDKIHSRA 646



 Score =  103 bits (257), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 53/138 (38%), Positives = 84/138 (60%), Gaps = 4/138 (2%)

Query: 198 TNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVSGPRS 256
           TN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+   +  K++ PR 
Sbjct: 1   TNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQ 60

Query: 257 LQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMFNGEE 316
           L  + WGM+CP++TPEG+ACGLVKNLALM  I+  +    +++ +   G+E  ++     
Sbjct: 61  LHNTHWGMVCPAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEEWGLE--SLEENAH 118

Query: 317 LSSPGVYLVFVNGILAGI 334
            ++P    VFVNG+  G+
Sbjct: 119 STTPCTK-VFVNGVWMGV 135



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/121 (38%), Positives = 66/121 (54%), Gaps = 14/121 (11%)

Query: 706 VNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQ 765
           +N+G     A  ++G      TH EI P  +LG+CA I              +P+P HNQ
Sbjct: 257 MNDGEFDPAARLKAGTHAHTWTHCEIHPSMILGICASI--------------IPFPDHNQ 302

Query: 766 APRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQ 825
           +PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  
Sbjct: 303 SPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNA 362

Query: 826 I 826
           I
Sbjct: 363 I 363


>gi|300394718|gb|ADK11897.1| DNA-directed RNA polymerase II subunit two, partial [Leucogyrophana
            arizonica]
          Length = 405

 Score =  215 bits (547), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 67   IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKF 126

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 127  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSVDRGLFRSIYYRSYMDLEKKSGIQQLEEF 186

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  ++ DG++APG  +    +++ K+ P    S        T   
Sbjct: 187  EKPTRDTTLRMKHGTYDKIEDDGLIAPGTGVSGEDIIIGKTAPIPPDSEELGQRTRTHTR 246

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 247  RDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITY 306

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 307  RQEDMPFTAEGIVPDIIINPHAI 329



 Score =  151 bits (381), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 73/159 (45%), Positives = 99/159 (62%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 247  RDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITY 306

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 307  RQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVES 366

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQ 1341
            V   L + GY  +G ++ Y G TG  L+A IY GP YYQ
Sbjct: 367  VSTFLRQKGYQSRGLEVMYHGHTGRKLQAQIYLGPTYYQ 405



 Score = 88.6 bits (218), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/109 (42%), Positives = 62/109 (56%), Gaps = 14/109 (12%)

Query: 718 ESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGK 777
           ++GI     TH EI P  +LGVCA I              +P+P HNQ+PRNTYQ AMGK
Sbjct: 42  KAGINAHTWTHCEIHPSMILGVCASI--------------IPFPDHNQSPRNTYQSAMGK 87

Query: 778 QAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
           QAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 88  QAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAI 136


>gi|134110814|ref|XP_775871.1| hypothetical protein CNBD2790 [Cryptococcus neoformans var.
            neoformans B-3501A]
 gi|50258537|gb|EAL21224.1| hypothetical protein CNBD2790 [Cryptococcus neoformans var.
            neoformans B-3501A]
          Length = 1245

 Score =  215 bits (547), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 112/269 (41%), Positives = 167/269 (62%), Gaps = 12/269 (4%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            +VP+P HNQ+PRNTYQ AMGKQAMG    N Q R+DT++  L Y Q+P+  ++++    F
Sbjct: 777  IVPFPDHNQSPRNTYQSAMGKQAMGVCLTNYQLRMDTMVNVLYYPQKPLATTRSMEYLKF 836

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRN------SKCVLKQYPN 1027
             +LPAGQNA +A+M YSGY+ ED++IMN++S+DRG  R L +R+       K ++K    
Sbjct: 837  SELPAGQNAIVAIMCYSGYNQEDSVIMNQSSIDRGLFRSLYFRSYTDTEKMKGMVKAETI 896

Query: 1028 QTHDRILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS-AISMA 1086
            +  DR     ++  T     R+  LD DG+VAPG  +    +L+ K+ P    S  +   
Sbjct: 897  EKPDRNETLRMKHGTGD---RYAKLDVDGLVAPGTNVNGDDILIGKTAPLPEDSEELGQR 953

Query: 1087 TPEY--KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKG 1144
            T  +  +++    K +    +++V++S+N E    +K+ +R TR P+IGDKF+SRHGQKG
Sbjct: 954  TQLHTKRDISTPLKSTEQGVVDQVMLSTNGEGNMFVKIRVRSTRVPQIGDKFASRHGQKG 1013

Query: 1145 VIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
             IG+   QEDMPF   G+ PDII+NPH +
Sbjct: 1014 TIGITYRQEDMPFTAEGLVPDIIINPHAI 1042



 Score =  187 bits (475), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 88/188 (46%), Positives = 120/188 (63%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            +++    K +    +++V++S+N E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 960  RDISTPLKSTEQGVVDQVMLSTNGEGNMFVKIRVRSTRVPQIGDKFASRHGQKGTIGITY 1019

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   G+ PDII+NPH  PSRMT+G L+E L  K   + G   + T F    +  
Sbjct: 1020 RQEDMPFTAEGLVPDIIINPHAIPSRMTIGHLVECLLSKVSTLTGAEGDATPFTELTVEA 1079

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
            V + L   GY  +G ++ Y G TG  L+A +Y GP YYQ+LKHMV DKIHAR+RGP  +L
Sbjct: 1080 VSKVLRAKGYQSRGFEVLYHGHTGRKLQAQVYFGPTYYQRLKHMVDDKIHARARGPLQIL 1139

Query: 1363 TRQPTGRR 1370
            TRQP   R
Sbjct: 1140 TRQPVEGR 1147



 Score =  116 bits (290), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 58/150 (38%), Positives = 90/150 (60%), Gaps = 6/150 (4%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQ 244
           +F +   +R +TIT+ L  A+ TGNW  R     R GV+QVL+R ++ S L  + R N+ 
Sbjct: 468 EFALNMAIRPNTITDGLKYALATGNWGKR--DNTRAGVSQVLNRYTFASTLSHLRRTNTP 525

Query: 245 FEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNI 304
             +  K + PR L  + WGM+CP++TPEG ACGLVKNLALM++I+  +    +++ +   
Sbjct: 526 IGRDSKAAKPRQLHNTHWGMVCPAETPEGSACGLVKNLALMSYISVGSYSAPVMEFLEEW 585

Query: 305 GIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
           G+E ++ +      +P    VFVNG+  GI
Sbjct: 586 GLEDLSEYQ----DAPTATKVFVNGVWMGI 611



 Score = 92.8 bits (229), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/100 (46%), Positives = 61/100 (61%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH+EI P  +LGVCA I              VP+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 761 THMEIHPSMILGVCASI--------------VPFPDHNQSPRNTYQSAMGKQAMGVCLTN 806

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
            Q R+DT++  L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 807 YQLRMDTMVNVLYYPQKPLATTRSMEYLKFSELPAGQNAI 846



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 42/77 (54%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A D L    + H+         KA +L  M+ R+ +A      LDDRD++GNKRL+LAG 
Sbjct: 379 AFDILHKEFLPHVSTAEGFESKKAYFLGYMVHRLCMAALGRKELDDRDHFGNKRLDLAGP 438

Query: 516 LLSLMFEDVFKRFNSEL 532
           L++ MF  VF +   ++
Sbjct: 439 LMAEMFNVVFGKLREDM 455


>gi|45330861|gb|AAS57791.1| RNA polymerase II second largest subunit [Cortinarius iodes]
          Length = 878

 Score =  215 bits (547), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 105/263 (39%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 530  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKF 589

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 590  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEF 649

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  E   R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 650  EKPTRENTLRLKHGTYDKLEDDGLIAPGTGVAGEDIIIGKTAPIPPDSEELGQRTRTHTR 709

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ +R +R P+IGDKF+SRHGQKG +G+  
Sbjct: 710  RDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRSSRIPQIGDKFASRHGQKGTVGITY 769

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PD+I+NPH +
Sbjct: 770  RQEDMPFTAEGIVPDVIINPHAI 792



 Score =  165 bits (417), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 77/169 (45%), Positives = 108/169 (63%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++NSE    +K+ +R +R P+IGDKF+SRHGQKG +G+  
Sbjct: 710  RDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRSSRIPQIGDKFASRHGQKGTVGITY 769

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PD+I+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 770  RQEDMPFTAEGIVPDVIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVES 829

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKI 1351
            V   L + GY  +G ++ Y G TG  L+A +Y GP YYQ+LKHMV DKI
Sbjct: 830  VSIFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMVDDKI 878



 Score =  109 bits (273), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 57/152 (37%), Positives = 90/152 (59%), Gaps = 6/152 (3%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 224 EFNLALAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT 283

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM  I+  +     ++ +  
Sbjct: 284 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMACISVGSIAAPGIEFLEE 343

Query: 304 IGIEHIAMFNGEELSSPGVYL-VFVNGILAGI 334
            G+E +     E   SP     +FVNG+  G+
Sbjct: 344 WGLESLE----EHSHSPAPSTKIFVNGVWIGV 371



 Score = 90.5 bits (223), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 48/121 (39%), Positives = 65/121 (53%), Gaps = 14/121 (11%)

Query: 706 VNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQ 765
            NEG     A  ++G      TH EI P  +LG+CA I              +P+P HNQ
Sbjct: 493 ANEGEFDPAARLKAGTHAHTLTHCEIHPSMILGICASI--------------IPFPDHNQ 538

Query: 766 APRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQ 825
           +PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  
Sbjct: 539 SPRNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNA 598

Query: 826 I 826
           I
Sbjct: 599 I 599



 Score = 58.5 bits (140), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 58/114 (50%), Gaps = 14/114 (12%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A++ L    + H+ +       KA +   MI R++LA  +   LDDRD++G KRL+LAG 
Sbjct: 135 AQEILQKEMLPHVAMKEGSEYQKAHFFGYMIHRLLLAALERRELDDRDHFGKKRLDLAGP 194

Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYGN 555
           LLS +F  +F++   ++           KE NL+  V    + +G  + L  GN
Sbjct: 195 LLSNLFRMLFRKLTKDVYRYLQKCVETHKEFNLALAVKHQTITNGLKYSLATGN 248


>gi|297527625|ref|YP_003669649.1| DNA-directed RNA polymerase subunit B [Staphylothermus hellenicus DSM
            12710]
 gi|297256541|gb|ADI32750.1| DNA-directed RNA polymerase subunit B [Staphylothermus hellenicus DSM
            12710]
          Length = 1156

 Score =  215 bits (547), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 108/263 (41%), Positives = 162/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++PY  HNQ+PRN+Y+ AM KQ++G    N Q R+DT  + L Y Q+P+V+++ + +  +
Sbjct: 687  IIPYAEHNQSPRNSYEAAMAKQSLGLYSANFQRRMDTHGHLLHYPQKPLVQTRAMEVNGY 746

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
            ++ PAGQN  +AVMS++GY+IEDALIMNK+S+DRG  R   +R    V  +YP    D+I
Sbjct: 747  NERPAGQNMVVAVMSFTGYNIEDALIMNKSSVDRGLARSTFFRLYTTVEYRYPGGQEDKI 806

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISM---ATPEY 1090
              P       +    +  LD+DGIV+P   +    VL+ K  P   ++A      A    
Sbjct: 807  TIPPSNVRGYRGPKAYEKLDEDGIVSPETPVKGGDVLIGKISPPRFMTAQEYTVGAGITR 866

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++  V  +      ++ V+V+++ +   L+K  +R  R PE+GDKF+SRHGQKGVIGL+V
Sbjct: 867  QDASVVTRHGEKGIVDLVMVTTDIDGNRLVKARVRDLRIPELGDKFASRHGQKGVIGLLV 926

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             Q+DMPF E GI PD+I+NPH  
Sbjct: 927  PQQDMPFTEEGIVPDLIINPHAF 949



 Score =  198 bits (503), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 96/173 (55%), Positives = 123/173 (71%)

Query: 1200 VLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDII 1259
            V+V+++ +   L+K  +R  R PE+GDKF+SRHGQKGVIGL+V Q+DMPF E GI PD+I
Sbjct: 884  VMVTTDIDGNRLVKARVRDLRIPELGDKFASRHGQKGVIGLLVPQQDMPFTEEGIVPDLI 943

Query: 1260 MNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDI 1319
            +NPH +PSRMTVG+LIE +AGKA  +EG + + T F    + ++   L RHGY   G + 
Sbjct: 944  INPHAFPSRMTVGQLIESIAGKAAALEGRFVDATPFHKEPIENLMITLKRHGYPMSGYET 1003

Query: 1320 FYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
             Y G TGE L+  I+ G VYYQKL HMV DKIHAR+RGP  +LTRQPT  R K
Sbjct: 1004 MYDGRTGEILKTPIFIGIVYYQKLHHMVADKIHARARGPVQILTRQPTEGRAK 1056



 Score = 96.7 bits (239), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 48/139 (34%), Positives = 81/139 (58%), Gaps = 15/139 (10%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G  +F D + +G IEYLD +E  +++IA++   I P   TH+EI    ++G+ A I    
Sbjct: 633 GEWKFSDLVKKGIIEYLDADEEEEAYIALTPDQITPE-HTHMEIWTPAIMGITASI---- 687

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                     +PY  HNQ+PRN+Y+ AM KQ++G    N Q R+DT  + L Y Q+P+V+
Sbjct: 688 ----------IPYAEHNQSPRNSYEAAMAKQSLGLYSANFQRRMDTHGHLLHYPQKPLVQ 737

Query: 808 SKTIRITNFHKLPAGKCQI 826
           ++ + +  +++ PAG+  +
Sbjct: 738 TRAMEVNGYNERPAGQNMV 756



 Score = 83.6 bits (205), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 76/135 (56%), Gaps = 6/135 (4%)

Query: 182 KAAQFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRI 241
           K  + D+   ++   +T+ +  A+ TGNW        + GV+Q+L R + +S L  + R+
Sbjct: 403 KYGKLDLKLVIKPGMLTDRILHAMATGNWP-----GGKTGVSQLLDRTNLMSTLSHLRRV 457

Query: 242 NSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIM 301
            S  ++T+     R L  +QWG +CP +TPEG   GLVKNLALM H++    E+++  I+
Sbjct: 458 VSPLKRTQPHFEARELHPTQWGRMCPFETPEGANIGLVKNLALMAHVSVGVPEEHIEPIL 517

Query: 302 YN-IGIEHIAMFNGE 315
           Y  +G++ I    GE
Sbjct: 518 YEKLGVKSIEEIIGE 532


>gi|300394760|gb|ADK11918.1| DNA-directed RNA polymerase II subunit two, partial [Tapinella
            atrotomentosa]
          Length = 653

 Score =  215 bits (547), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 160/263 (60%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 349  IIPFPDHNQSPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKF 408

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 409  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEF 468

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 469  EKPTRDTTLRMKHGTYDKLEDDGLIAPGTGVTGEDIIIGKTAPIPPDSEELGQRTRTHTR 528

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+S+N E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 529  RDVSTPLKSTENGIVDQVLISTNFEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 588

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PD+I+NPH +
Sbjct: 589  RQEDMPFTAEGIVPDLIINPHAI 611



 Score =  119 bits (297), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 54/113 (47%), Positives = 74/113 (65%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+S+N E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 529  RDVSTPLKSTENGIVDQVLISTNFEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 588

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAF 1295
             QEDMPF   GI PD+I+NPH  PSRMT+G L+E L  K   + GN  + T F
Sbjct: 589  RQEDMPFTAEGIVPDLIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPF 641



 Score =  111 bits (277), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 92/151 (60%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 42  EFNLSLAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT 101

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM  I+  +    +++ +  
Sbjct: 102 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEE 161

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E  ++      S+P    VFVNG+  G+
Sbjct: 162 WGLE--SLEENAHSSTPCTK-VFVNGVWMGV 189



 Score = 88.2 bits (217), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/177 (32%), Positives = 88/177 (49%), Gaps = 22/177 (12%)

Query: 706 VNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQ 765
            N+G+    A  ++       TH EI P  +LG+CA I              +P+P HNQ
Sbjct: 312 ANDGDFDPAARLKASTNAHTWTHCEIHPSMILGICASI--------------IPFPDHNQ 357

Query: 766 APRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQ 825
           +PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  
Sbjct: 358 SPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNA 417

Query: 826 ISPGGAEELTARESCHEVLKIISFSISVAVFDSVWLG-----DVKQGVHQLSEEKEP 877
           I    A    +  +  + + +   SI   +F S++       + K GV QL E ++P
Sbjct: 418 IV---AILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKP 471


>gi|52699827|gb|AAU86975.1| DNA-dependent RNA polymerase II second largest subunit [Lecanora
            concolor]
          Length = 708

 Score =  215 bits (547), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 102/263 (38%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 360  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDQRMDTMANILYYPQKPLATTRSMEFLKF 419

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  Y+GY+ ED++IMN++S+DRG  R L YR      KQ  +   ++ 
Sbjct: 420  RELPAGQNAIVAIACYTGYNQEDSVIMNQSSIDRGLFRSLFYRAYSDQEKQIGHSVLEQF 479

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMP-TISVSAISMATPEY-- 1090
              P+     +     +  LD DG+VAPG ++    +++ K+ P T     +   T  +  
Sbjct: 480  EKPMRSETLKLKHGTYDKLDDDGLVAPGVRVSGEDIIIGKTAPITADAEELGQRTKAHTK 539

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            +++    + +    +++VL+S+N++     K+ +R T+ P+IGDKF+SRHGQKG IG+  
Sbjct: 540  RDISTPLRSTENGIVDQVLMSTNADGLRFAKVRMRTTKIPQIGDKFASRHGQKGTIGITY 599

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   G+ PD+I+NPH +
Sbjct: 600  RQEDMPFTSEGVVPDLIINPHAI 622



 Score =  148 bits (373), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 82/237 (34%), Positives = 127/237 (53%), Gaps = 11/237 (4%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESGICPDIIMNPHGLK 1174
            +L Q  +P   +    +HG        G++  G+ V  ED+     G    I  +   L 
Sbjct: 475  VLEQFEKPMRSETLKLKHGTYDKLDDDGLVAPGVRVSGEDIII---GKTAPITADAEELG 531

Query: 1175 GCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQ 1234
               +    +++    + +    +++VL+S+N++     K+ +R T+ P+IGDKF+SRHGQ
Sbjct: 532  QRTKAHTKRDISTPLRSTENGIVDQVLMSTNADGLRFAKVRMRTTKIPQIGDKFASRHGQ 591

Query: 1235 KGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTA 1294
            KG IG+   QEDMPF   G+ PD+I+NPH  PSRMT+  LIE    K   + G   + T 
Sbjct: 592  KGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATP 651

Query: 1295 FGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKI 1351
            F    +  V   L  +GY+ +G ++ Y+G TG  L A ++ GP YYQ+L+HMV  KI
Sbjct: 652  FTEVTVDSVSRLLRENGYHSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDXKI 708



 Score =  110 bits (276), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 55/157 (35%), Positives = 93/157 (59%), Gaps = 6/157 (3%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F+    ++  T+TN L  ++ TGNW   ++    + GV+QVL+R ++ S L  + R N+
Sbjct: 36  EFNPTLAVKSSTLTNGLKYSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNT 95

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT  +    ++  M  
Sbjct: 96  PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGSPSDPIIDFMVQ 155

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGITCHHKE 340
             ++ +  +  E L+ P    +FVNG+  G+   H+E
Sbjct: 156 RNMDVLEEY--EPLTFPNATKIFVNGVWVGV---HRE 187



 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 344 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 389

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 390 FDQRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 429


>gi|402294651|gb|AFQ55279.1| DNA-directed RNA polymerase II [Peltigera membranacea]
          Length = 1255

 Score =  215 bits (547), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 106/266 (39%), Positives = 161/266 (60%), Gaps = 9/266 (3%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+PM  ++++    F
Sbjct: 784  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDQRMDTMANILYYPQKPMATTRSMEFLKF 843

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR+     K+      ++ 
Sbjct: 844  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSIVEQF 903

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKEV 1093
              P+     R     +  LD DGIVAPG ++    +++ K+ P   +   S    +  ++
Sbjct: 904  EKPMRTDTLRLKHGTYEKLDDDGIVAPGVRVSGEDMIIGKTAP---IPPDSEELGQRTKM 960

Query: 1094 PVSYKGSVP------SYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
             +    S P        +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHGQKG IG
Sbjct: 961  HIKRDASTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIG 1020

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            +   QEDMPF   G+ PD+I+NPH +
Sbjct: 1021 ITYRQEDMPFTSEGVVPDLIINPHAI 1046



 Score =  180 bits (457), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 95/258 (36%), Positives = 145/258 (56%), Gaps = 11/258 (4%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESGICPDIIMNPHGLK 1174
            ++ Q  +P   D    +HG        G++  G+ V  EDM   ++   P    +   L 
Sbjct: 899  IVEQFEKPMRTDTLRLKHGTYEKLDDDGIVAPGVRVSGEDMIIGKTAPIPP---DSEELG 955

Query: 1175 GCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQ 1234
               ++   ++     + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHGQ
Sbjct: 956  QRTKMHIKRDASTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQ 1015

Query: 1235 KGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTA 1294
            KG IG+   QEDMPF   G+ PD+I+NPH  PSRMT+  LIE    K   + G   + T 
Sbjct: 1016 KGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSALRGFEGDATP 1075

Query: 1295 FGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHAR 1354
            F    +  V + L  HGY  +G ++ Y+  TG+ L A ++ GP YYQ+L+HMV DKIHAR
Sbjct: 1076 FTEVTVDSVSKILRAHGYQSRGFEVMYNAHTGQKLVAQVFLGPTYYQRLRHMVDDKIHAR 1135

Query: 1355 SRGPRVVLTRQPTGRRWK 1372
            +RGP  +LTRQP   R +
Sbjct: 1136 ARGPVQILTRQPVEGRAR 1153



 Score =  114 bits (286), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 91/151 (60%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  T+TN L  ++ TGNW   ++    + GV+QVL+R ++ S L  + R N+
Sbjct: 460 EFNLTLGVKSTTLTNGLKYSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNT 519

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT     + ++  M  
Sbjct: 520 PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPCEPIIDFMNQ 579

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
             +E +  +  E L SP    VFVNG+  G+
Sbjct: 580 RNMEMLEEY--EPLRSPNATKVFVNGVWVGV 608



 Score = 92.0 bits (227), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/100 (44%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 768 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 813

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+PM  ++++    F +LPAG+  I
Sbjct: 814 YDQRMDTMANILYYPQKPMATTRSMEFLKFRELPAGQNAI 853



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 56/114 (49%), Gaps = 14/114 (12%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           ARD +    + HI   +     KA +L  M+ RM+        +DDRD++G KRL+LAG 
Sbjct: 371 ARDIMQKELLPHISQTDGSETKKAFFLGYMVHRMLQCALGRREVDDRDHFGKKRLDLAGP 430

Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLS-GV--VNLVSGWWFELKYGN 555
           LL+ +F  +F +   ++           +E NL+ GV    L +G  + L  GN
Sbjct: 431 LLAGLFRMLFNKLTKDVFKYLQKCVENNREFNLTLGVKSTTLTNGLKYSLATGN 484


>gi|86559341|gb|ABD04078.1| RNA polymerase II second largest subunit, partial [Aureoboletus
            thibetanus]
          Length = 692

 Score =  215 bits (547), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 105/263 (39%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 342  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKF 401

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 402  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEF 461

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 462  EKPTRDTTLRMKHGTYDKLEDDGLIAPGTNVRGEDIIIGKTAPIPPDSEELGQRTRTHTR 521

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 522  RDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITY 581

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PD+++NPH +
Sbjct: 582  RQEDMPFTAEGIVPDLVINPHAI 604



 Score =  171 bits (433), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 80/171 (46%), Positives = 111/171 (64%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 522  RDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITY 581

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PD+++NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 582  RQEDMPFTAEGIVPDLVINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVES 641

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHA 1353
            V   L + GY  +G ++ Y G TG+ L+A IY GP YYQ+LKHMV DKIH+
Sbjct: 642  VSTFLRQKGYQSRGLEVMYHGHTGKKLQAQIYLGPTYYQRLKHMVDDKIHS 692



 Score =  110 bits (276), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 93/151 (61%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKM-ERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 35  EFNLSLAVKHQTITNGLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNT 94

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLV+NLALM+ I+  +    +++ +  
Sbjct: 95  PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVRNLALMSGISVGSYSAPVIEFLEE 154

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E  ++      S+P    VFVNG+  G+
Sbjct: 155 WGLE--SLEENAHSSTPCTK-VFVNGVWMGV 182



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 85/165 (51%), Gaps = 22/165 (13%)

Query: 718 ESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGK 777
           ++GI     TH EI P  +LGVCA I              +P+P HNQ+PRNTYQ AMGK
Sbjct: 317 KAGITAHTWTHCEIHPSMILGVCASI--------------IPFPDHNQSPRNTYQSAMGK 362

Query: 778 QAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQISPGGAEELTAR 837
           QAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  I    A    + 
Sbjct: 363 QAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIV---AILCYSG 419

Query: 838 ESCHEVLKIISFSISVAVFDSVWLG-----DVKQGVHQLSEEKEP 877
            +  + + +   SI   +F S++       + K GV QL E ++P
Sbjct: 420 YNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKP 464


>gi|70794972|gb|AAZ08460.1| RNA polymerase II second largest subunit [Eschscholzia californica]
          Length = 951

 Score =  215 bits (547), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 109/270 (40%), Positives = 167/270 (61%), Gaps = 19/270 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 613  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHF 672

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L +R+ +           ++ 
Sbjct: 673  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR---------DEEKK 723

Query: 1034 LGPLLEADTRKPV------YRHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            +G L++ D  +P        RH +   LD DG+  PG ++    V++ K+ P     +  
Sbjct: 724  MGTLIKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDDSQG 783

Query: 1085 MATP-EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1143
             A+    ++   S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQK
Sbjct: 784  QASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQK 843

Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G +G+   QEDMP+   GI PDII+NPH +
Sbjct: 844  GTVGMTYTQEDMPWTVEGITPDIIVNPHAI 873



 Score =  144 bits (363), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 68/157 (43%), Positives = 99/157 (63%)

Query: 1187 VSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQED 1246
             S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   QED
Sbjct: 795  TSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 854

Query: 1247 MPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEE 1306
            MP+   GI PDII+NPH  PSRMT+G+LIE + GK     G   + T F    + ++ + 
Sbjct: 855  MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 914

Query: 1307 LIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKL 1343
            L + GY  +G +  Y+G TG  L A I+ GP YYQ+L
Sbjct: 915  LHKCGYQMRGFETMYNGHTGRKLTAMIFLGPTYYQRL 951



 Score =  115 bits (288), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 62/146 (42%), Positives = 87/146 (59%), Gaps = 8/146 (5%)

Query: 192 MRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKV 251
           ++  TIT+ L  ++ TGNW        R GV+QVL+RL+Y S L  + R+NS   +  K+
Sbjct: 335 IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKL 394

Query: 252 SGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAM 311
           + PR L  S WGM+CP++TPEG+ACGLVKNLALM +IT  +    +L+ +     E  + 
Sbjct: 395 AKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEFL-----EEWST 449

Query: 312 FNGEELSS---PGVYLVFVNGILAGI 334
            N EE+S    P    +FVNG   GI
Sbjct: 450 ENFEEISPAVIPQSTKIFVNGCWVGI 475



 Score =  100 bits (248), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 56/141 (39%), Positives = 78/141 (55%), Gaps = 24/141 (17%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVS-----ESGIRPG-----VTTHLEIAPFTLLGVCA 741
           + D + +G IEY+D  E   + I+++      + + P        TH EI P  +LGVCA
Sbjct: 552 WHDLVAKGFIEYVDTEEEETTMISMTINDLVSARVNPKEAYSETYTHCEIHPSLILGVCA 611

Query: 742 GIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYA 801
            I              +P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y 
Sbjct: 612 SI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYP 657

Query: 802 QRPMVESKTIRITNFHKLPAG 822
           Q+P+V ++ +   +F +LPAG
Sbjct: 658 QKPLVTTRAMEHLHFRQLPAG 678



 Score = 57.4 bits (137), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 54/114 (47%), Gaps = 14/114 (12%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           AR+ L    + H+ V       KA Y   +I R++L        DDRD+YGNKRL+LAG 
Sbjct: 239 AREILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCAIGRRPEDDRDHYGNKRLDLAGP 298

Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYGN 555
           LL  +F  +F++   ++           KE NL   +    + SG  + L  GN
Sbjct: 299 LLGGLFRMLFRKLTRDVRGYVQKCVDNGKEVNLQFAIKAKTITSGLKYSLATGN 352



 Score = 45.4 bits (106), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 19/68 (27%)

Query: 358 PHECRLRDLTYSAPITVDIEYTRGSQRVVR--------------SDLVIGRMPIMLQSSK 403
           P   RLR+LTYSAP+ VD+     ++R+++              + + IGR+PIML+SS 
Sbjct: 7   PKAARLRNLTYSAPLYVDV-----TKRIIKKGHDCEEVAETQDFTKVFIGRVPIMLRSSY 61

Query: 404 CVLRNKTE 411
           C L   +E
Sbjct: 62  CTLYQNSE 69


>gi|109289335|gb|ABG29161.1| RNA polymerase II largest subunit, partial [Asterotremella humicola]
          Length = 706

 Score =  215 bits (547), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 108/266 (40%), Positives = 160/266 (60%), Gaps = 6/266 (2%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DT+   L Y Q P+  +++++   F
Sbjct: 354  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNYQLRMDTMANILYYPQSPLATTQSMKYLKF 413

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R L YR      K    Q  +  
Sbjct: 414  SELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSLYYRAYTDTEKMVGMQKVEAF 473

Query: 1034 LGPLLEADTR---KPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMAT 1087
              P  +   R    P  R+  LD DG++ P   +    +++ K+ P    S       AT
Sbjct: 474  EKPNRDETLRMKHGPSDRYAKLDGDGLITPATNVNGDDIIIGKTAPIPPGSEELGQRSAT 533

Query: 1088 PEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
               ++V    K +    +++V++++N++    +K+ +R TR P+IGDKF+SRHGQKG IG
Sbjct: 534  HTKRDVSTPMKSTEQGVVDQVMITTNADGLKFVKIRIRSTRVPQIGDKFASRHGQKGTIG 593

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            +   QEDMPF   GI PDII+NPH +
Sbjct: 594  ITYRQEDMPFTAEGITPDIIINPHAI 619



 Score =  164 bits (415), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 76/170 (44%), Positives = 107/170 (62%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++V++++N++    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 537  RDVSTPMKSTEQGVVDQVMITTNADGLKFVKIRIRSTRVPQIGDKFASRHGQKGTIGITY 596

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + G   + T F    +  
Sbjct: 597  RQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLSKLATLTGREGDATPFTDLTVES 656

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIH 1352
            V + L   GY  +G ++ Y G TG+ L A +Y GP YYQ+LKHMV DKI 
Sbjct: 657  VSKLLRERGYQSRGLEVMYHGHTGKKLRAQVYFGPTYYQRLKHMVDDKIQ 706



 Score =  118 bits (295), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 58/151 (38%), Positives = 94/151 (62%), Gaps = 5/151 (3%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F +VN ++   ITN L  ++ TGNW  +   M+ R GV+QVL+R ++ S L  + R N+
Sbjct: 43  EFTLVNAIKPGIITNGLKYSLATGNWGDQAKAMQARAGVSQVLNRYTFASTLSHLRRTNT 102

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM++I+  +    +++ +  
Sbjct: 103 PIGRDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSYISVGSYSAPVMEFLEE 162

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E    ++    ++P    VFVNG+  GI
Sbjct: 163 WGLEDQTEYS----NAPSATKVFVNGVWMGI 189



 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/100 (45%), Positives = 59/100 (59%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LGVCA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 338 THCEIHPSMILGVCASI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYLTN 383

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
            Q R+DT+   L Y Q P+  +++++   F +LPAG+  I
Sbjct: 384 YQLRMDTMANILYYPQSPLATTQSMKYLKFSELPAGQNAI 423


>gi|255073731|ref|XP_002500540.1| predicted protein [Micromonas sp. RCC299]
 gi|226515803|gb|ACO61798.1| predicted protein [Micromonas sp. RCC299]
          Length = 1178

 Score =  215 bits (547), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 106/262 (40%), Positives = 163/262 (62%), Gaps = 3/262 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 717  IIPFPDHNQSPRNTYQSAMGKQAMGMYVTNFQIRMDTLAYVLFYPQKPLVTTRAMEHLHF 776

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG N  + +M Y+GY+ ED++IMN++S+DRG  R + YR+ K   K+  + T + +
Sbjct: 777  RELPAGVNVVVGIMCYTGYNQEDSVIMNQSSIDRGLFRSIFYRSFKDEEKKQGSLTKEEL 836

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKS--MPTISVSAISMATPEYK 1091
              P  +         +  LD DG++ PG ++    +++ K+  +P    SA+S    + +
Sbjct: 837  ERPSRDTTLGMRHGTYDKLDDDGLICPGTRVSGEDIIIGKTSPLPEDDPSAVSKRFTK-R 895

Query: 1092 EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVE 1151
            +     K S    +++VL+++N +    +K+ +R  R P++GDKFSSRHGQKG IG+   
Sbjct: 896  DCSTGMKNSETGIIDQVLLTTNDQGLRFVKIRVRSCRTPQVGDKFSSRHGQKGTIGMTYT 955

Query: 1152 QEDMPFNESGICPDIIMNPHGL 1173
            QEDMPF   GI PDII+NPH +
Sbjct: 956  QEDMPFTCEGIVPDIIVNPHAI 977



 Score =  189 bits (480), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 103/249 (41%), Positives = 143/249 (57%), Gaps = 13/249 (5%)

Query: 1126 QTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESGICPDIIMNPHGLKGCD 1177
            +  RP        RHG        G+I  G  V  ED+   ++   P+   +P  +    
Sbjct: 835  ELERPSRDTTLGMRHGTYDKLDDDGLICPGTRVSGEDIIIGKTSPLPED--DPSAVS--K 890

Query: 1178 RITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV 1237
            R T+ ++     K S    +++VL+++N +    +K+ +R  R P++GDKFSSRHGQKG 
Sbjct: 891  RFTK-RDCSTGMKNSETGIIDQVLLTTNDQGLRFVKIRVRSCRTPQVGDKFSSRHGQKGT 949

Query: 1238 IGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGG 1297
            IG+   QEDMPF   GI PDII+NPH  PSRMT+G+L+E L GK   M G   + T F  
Sbjct: 950  IGMTYTQEDMPFTCEGIVPDIIVNPHAIPSRMTIGQLVECLMGKVAAMMGKEGDATPFTP 1009

Query: 1298 TKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRG 1357
              +  + + L   GY  +G ++ Y+G TG  LEA I+ GP YYQ+LKHMV DKIH+R RG
Sbjct: 1010 VTVESISDMLHMCGYQKRGNEVMYNGHTGRKLEAKIFLGPTYYQRLKHMVDDKIHSRGRG 1069

Query: 1358 PRVVLTRQP 1366
            P  +LTRQP
Sbjct: 1070 PVQILTRQP 1078



 Score =  109 bits (272), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 61/153 (39%), Positives = 94/153 (61%), Gaps = 13/153 (8%)

Query: 192 MRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKV 251
           ++  TIT+ L  ++ TGNW  +  +  R GV+QVL+RLS+ S L  + R+NS   +  K+
Sbjct: 439 VKAKTITSGLKYSLATGNWGAQGAQDIRAGVSQVLNRLSFSSTLSHLRRLNSPIGREGKL 498

Query: 252 SGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAM 311
           + PR L  S WGM+CP++TPEG+A GLVKNL+LM  ++  +    +L+ +     E  +M
Sbjct: 499 AKPRQLHNSHWGMVCPAETPEGQAVGLVKNLSLMCLVSVGSPSAPLLEFL-----EEWSM 553

Query: 312 FNGEELSSPGVYL----VFVNGILAGITCHHKE 340
            N EE+ SP V +    +FVNG+  G+   H+E
Sbjct: 554 ENLEEI-SPSVIVNATKIFVNGVWVGV---HRE 582



 Score =  102 bits (255), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 57/142 (40%), Positives = 78/142 (54%), Gaps = 25/142 (17%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVS-----------ESGIRPGVTTHLEIAPFTLLGVC 740
           ++D +  G IEY+D  E   + IA++           E G    + TH EI P  +LG+C
Sbjct: 655 WNDLVATGCIEYVDTEEEETTMIAMTIDELVGQRINAEPGGVKHMYTHCEIHPSMILGIC 714

Query: 741 AGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVY 800
           A I              +P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y
Sbjct: 715 ASI--------------IPFPDHNQSPRNTYQSAMGKQAMGMYVTNFQIRMDTLAYVLFY 760

Query: 801 AQRPMVESKTIRITNFHKLPAG 822
            Q+P+V ++ +   +F +LPAG
Sbjct: 761 PQKPLVTTRAMEHLHFRELPAG 782



 Score = 53.9 bits (128), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 46/78 (58%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           AR+ L    + H+ V       KA +L  ++ R++L        DDRD++GNKR++L+G 
Sbjct: 343 AREILQKELLPHVGVNEGCETKKAYFLGYIVNRLLLCALGRKKEDDRDHFGNKRMDLSGP 402

Query: 516 LLSLMFEDVFKRFNSELK 533
           L++++F  +F++   +++
Sbjct: 403 LIAMLFRQLFRKVTKDVR 420



 Score = 42.7 bits (99), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 16/87 (18%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVD-----------IEYTRGSQ-RVVRS 388
           + KP + E+   T    P E RLR+LTYSAP+ +D           I+ T G     + +
Sbjct: 89  LSKPMVTEADGMTSTLFPKEARLRNLTYSAPLYIDMAKSTITTTDEIDATTGKYIETIDT 148

Query: 389 D----LVIGRMPIMLQSSKCVLRNKTE 411
           +    +  G++PIML+S  C L + T+
Sbjct: 149 EEYPKVFFGKVPIMLRSQYCSLHDHTD 175


>gi|45545341|gb|AAS67518.1| DNA-dependent RNA polymerase II second largest subunit, partial
            [Peltigera membranacea]
          Length = 895

 Score =  215 bits (547), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 106/266 (39%), Positives = 161/266 (60%), Gaps = 9/266 (3%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+PM  ++++    F
Sbjct: 553  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDQRMDTMANILYYPQKPMATTRSMEFLKF 612

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR+     K+      ++ 
Sbjct: 613  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSIVEQF 672

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKEV 1093
              P+     R     +  LD DGIVAPG ++    +++ K+ P   +   S    +  ++
Sbjct: 673  EKPMRTDTLRLKHGTYEKLDDDGIVAPGVRVSGEDMIIGKTAP---IPPDSEELGQRTKM 729

Query: 1094 PVSYKGSVP------SYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
             +    S P        +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHGQKG IG
Sbjct: 730  HIKRDASTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIG 789

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            +   QEDMPF   G+ PD+I+NPH +
Sbjct: 790  ITYRQEDMPFTSEGVVPDLIINPHAI 815



 Score =  146 bits (368), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 78/231 (33%), Positives = 125/231 (54%), Gaps = 11/231 (4%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESGICPDIIMNPHGLK 1174
            ++ Q  +P   D    +HG        G++  G+ V  EDM   ++   P    +   L 
Sbjct: 668  IVEQFEKPMRTDTLRLKHGTYEKLDDDGIVAPGVRVSGEDMIIGKTAPIPP---DSEELG 724

Query: 1175 GCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQ 1234
               ++   ++     + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHGQ
Sbjct: 725  QRTKMHIKRDASTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQ 784

Query: 1235 KGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTA 1294
            KG IG+   QEDMPF   G+ PD+I+NPH  PSRMT+  LIE    K   + G   + T 
Sbjct: 785  KGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSALRGFEGDATP 844

Query: 1295 FGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKH 1345
            F    +  V + L  HGY  +G ++ Y+  TG+ L A ++ GP YYQ+L+H
Sbjct: 845  FTEVTVDSVSKILRAHGYQSRGFEVMYNAHTGQKLVAQVFLGPTYYQRLRH 895



 Score =  114 bits (284), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 91/151 (60%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  T+TN L  ++ TGNW   ++    + GV+QVL+R ++ S L  + R N+
Sbjct: 229 EFNLTLGVKSTTLTNGLKYSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNT 288

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT     + ++  M  
Sbjct: 289 PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPCEPIIDFMNQ 348

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
             +E +  +  E L SP    VFVNG+  G+
Sbjct: 349 RNMEMLEEY--EPLRSPNATKVFVNGVWVGV 377



 Score = 91.7 bits (226), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 44/100 (44%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 537 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 582

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+PM  ++++    F +LPAG+  I
Sbjct: 583 YDQRMDTMANILYYPQKPMATTRSMEFLKFRELPAGQNAI 622



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 56/114 (49%), Gaps = 14/114 (12%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           ARD +    + HI   +     KA +L  M+ RM+        +DDRD++G KRL+LAG 
Sbjct: 140 ARDIMQKELLPHISQTDGSETKKAFFLGYMVHRMLQCALGRREVDDRDHFGKKRLDLAGP 199

Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLS-GV--VNLVSGWWFELKYGN 555
           LL+ +F  +F +   ++           +E NL+ GV    L +G  + L  GN
Sbjct: 200 LLAGLFRMLFNKLTKDVFKYLQKCVENNREFNLTLGVKSTTLTNGLKYSLATGN 253


>gi|344323318|gb|AEN14442.1| DNA-dependent RNA polymerase II second largest subunit [Lentinula
            edodes]
          Length = 1228

 Score =  215 bits (547), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 758  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKF 817

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 818  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEF 877

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 878  EKPTRDNTLRMKHGTYDKLEDDGLIAPGTGVRGEDIIIGKTAPIPPDSEELGQRTRTHTR 937

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 938  RDVSTPLKSTESGIVDQVLITTNSEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 997

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDI++NPH +
Sbjct: 998  RQEDMPFTAEGIVPDIVINPHAI 1020



 Score =  189 bits (480), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 89/188 (47%), Positives = 122/188 (64%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 938  RDVSTPLKSTESGIVDQVLITTNSEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 997

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDI++NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 998  RQEDMPFTAEGIVPDIVINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVES 1057

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
            V   L + GY  +G ++ + G TG  L+A +Y GP YYQ+LKHMV DKIH+R+RGP  +L
Sbjct: 1058 VSMFLKQKGYQSRGLEVMFHGHTGRKLQAQVYLGPTYYQRLKHMVDDKIHSRARGPVQIL 1117

Query: 1363 TRQPTGRR 1370
            TRQP   R
Sbjct: 1118 TRQPVEGR 1125



 Score =  116 bits (290), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 59/157 (37%), Positives = 97/157 (61%), Gaps = 6/157 (3%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 451 EFNLALAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT 510

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM+ I+  +    +++ +  
Sbjct: 511 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSYSAPVIEFLEE 570

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGITCHHKE 340
            G+E  ++      S+P +  VFVNG+  G+   H+E
Sbjct: 571 WGLE--SLEENAHSSTPTMTKVFVNGVWMGV---HRE 602



 Score = 91.3 bits (225), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 89/176 (50%), Gaps = 22/176 (12%)

Query: 707 NEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQA 766
           N+G     A  ++GI     TH EI P  +LG+CA I              +P+P HNQ+
Sbjct: 722 NDGEFDPAARLKAGISAHTWTHCEIHPSMILGICASI--------------IPFPDHNQS 767

Query: 767 PRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
           PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 768 PRNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAI 827

Query: 827 SPGGAEELTARESCHEVLKIISFSISVAVFDSVWLG-----DVKQGVHQLSEEKEP 877
               A    +  +  + + +   SI   +F S++       + K GV QL E ++P
Sbjct: 828 V---AILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKP 880



 Score = 58.5 bits (140), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 14/114 (12%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A++ L    + H+ +       KA +   MI R++LA  +   LDDRD++G KRL+LAG 
Sbjct: 362 AQEILQKEMLPHVSMAEGSESKKAFFFGYMIHRLLLAALERRELDDRDHFGKKRLDLAGP 421

Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYGN 555
           LL+ +F  +F++   ++           KE NL+  V    + +G  + L  GN
Sbjct: 422 LLANLFRMLFRKLTKDVYRYMQKCVETHKEFNLALAVKHQTITNGLKYSLATGN 475



 Score = 43.9 bits (102), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 30/44 (68%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSD 157
           D W ++ SF ++KGLV+  +DSFD F+   +++L+  NA++  D
Sbjct: 36  DCWTVISSFFEQKGLVRQQLDSFDEFVQNTMQELVDENADLILD 79


>gi|168027816|ref|XP_001766425.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162682334|gb|EDQ68753.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1185

 Score =  215 bits (547), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 108/261 (41%), Positives = 160/261 (61%), Gaps = 1/261 (0%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 710  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHF 769

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R + YR+ +   K+      +  
Sbjct: 770  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSIFYRSYRDEEKKQGTLIKEEF 829

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYK-E 1092
              P  E  T      +  LD DG+  PG ++    V++ K+ P       S A    K +
Sbjct: 830  ERPNRENTTGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPLPQDDNASQAQRYTKRD 889

Query: 1093 VPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQ 1152
                 + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   Q
Sbjct: 890  QSTCLRHSESGMIDQVLLTTNADGLRFVKIRVRSIRIPQIGDKFSSRHGQKGTVGMTYTQ 949

Query: 1153 EDMPFNESGICPDIIMNPHGL 1173
            EDMP+ + GI PDII+NPH +
Sbjct: 950  EDMPWTQEGITPDIIVNPHAI 970



 Score =  184 bits (466), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 84/174 (48%), Positives = 119/174 (68%)

Query: 1197 LEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICP 1256
            +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   QEDMP+ + GI P
Sbjct: 902  IDQVLLTTNADGLRFVKIRVRSIRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTQEGITP 961

Query: 1257 DIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQG 1316
            DII+NPH  PSRMT+G+LIE + GK     G   + T F    + ++ + L + GY  +G
Sbjct: 962  DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG 1021

Query: 1317 KDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRR 1370
             ++ Y+G TG  L A+I+ GP YYQ+LKHMV DKIH+R RGP  +LTRQP   R
Sbjct: 1022 FEVMYNGHTGRRLTAHIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGR 1075



 Score =  117 bits (293), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 62/153 (40%), Positives = 91/153 (59%), Gaps = 8/153 (5%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQ 244
           + ++   ++  TIT+ L  ++ TGNW        R GV+QVL+RL+Y S L  + R+NS 
Sbjct: 426 EINLAYAVKAKTITSGLKYSLATGNWGQANTAGVRAGVSQVLNRLTYASTLSHLRRLNSP 485

Query: 245 FEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNI 304
             +  K++ PR L  S WGM+CP++TPEG+ACGLVKNLALM +IT  +    +L+ +   
Sbjct: 486 IGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMAYITVGSAANPILEFL--- 542

Query: 305 GIEHIAMFNGEELSS---PGVYLVFVNGILAGI 334
             E  +  N EE+S    P    +FVNG+  GI
Sbjct: 543 --EEWSTENFEEISPAVIPNSTKIFVNGLWVGI 573



 Score = 98.2 bits (243), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/171 (35%), Positives = 84/171 (49%), Gaps = 39/171 (22%)

Query: 677 RPTFLNMHQFLGFKRFD---------------DFLYEGKIEYLDVNEGNDSHIAVSESGI 721
           RP F+   Q L  K+ D               D + +G IEY+D  E   + I+++ + +
Sbjct: 619 RPLFIVEKQRLLIKKQDVRALQMKESSENSWYDLVSKGFIEYVDTEEEETTMISMTIADL 678

Query: 722 ----------RPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTY 771
                          TH EI P  +LGVC  I              +P+P HNQ+PRNTY
Sbjct: 679 VNARNNPEEAYSDTYTHCEIHPSMILGVCGSI--------------IPFPDHNQSPRNTY 724

Query: 772 QCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAG 822
           Q AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F +LPAG
Sbjct: 725 QSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG 775



 Score = 54.3 bits (129), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 58/115 (50%), Gaps = 17/115 (14%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVL-ALSDPDMLDDRDYYGNKRLELAG 514
           A++ L    + H+ V       KA +   +I R++L A+   +  DDRD+YGNKRL+LAG
Sbjct: 338 AKEILQKEMLPHVGVGEFCETKKAYFFGYIIHRLLLCAIGGAE--DDRDHYGNKRLDLAG 395

Query: 515 SLLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYGN 555
            LL  +F  +F++   ++           KE NL+  V    + SG  + L  GN
Sbjct: 396 PLLGGLFRMLFRKLTKDVRGYLQKCVDNGKEINLAYAVKAKTITSGLKYSLATGN 450



 Score = 43.1 bits (100), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 9/75 (12%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIE--YTRGSQRVVR-------SDLV 391
           + KP + E+   T    P   RLR+LTYSAP+ VD+    TR ++           S + 
Sbjct: 89  LSKPMMTEADGETATLWPKAARLRNLTYSAPLYVDVTKFVTRKTEDGEEETEQEDLSKVY 148

Query: 392 IGRMPIMLQSSKCVL 406
           IG++PIML+S  C L
Sbjct: 149 IGKVPIMLRSRYCTL 163


>gi|56694368|gb|AAW22924.1| RNA polymerase II second largest subunit [Drimys winteri]
          Length = 565

 Score =  215 bits (547), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 109/270 (40%), Positives = 167/270 (61%), Gaps = 19/270 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 200  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHF 259

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L +R+ +           ++ 
Sbjct: 260  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR---------DEEKK 310

Query: 1034 LGPLLEADTRKPV------YRHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            +G L++ D  +P        RH +   LD DG+  PG ++    V++ K+ P     +  
Sbjct: 311  MGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDESQG 370

Query: 1085 MATP-EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1143
             A+    ++   S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQK
Sbjct: 371  QASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRVPQIGDKFSSRHGQK 430

Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G +G+   QEDMP+   GI PDII+NPH +
Sbjct: 431  GTVGMTYTQEDMPWTVEGITPDIIVNPHAI 460



 Score =  181 bits (460), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 86/184 (46%), Positives = 119/184 (64%)

Query: 1187 VSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQED 1246
             S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   QED
Sbjct: 382  TSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRVPQIGDKFSSRHGQKGTVGMTYTQED 441

Query: 1247 MPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEE 1306
            MP+   GI PDII+NPH  PSRMT+G+LIE + GK     G   + T F    + ++ + 
Sbjct: 442  MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 501

Query: 1307 LIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQP 1366
            L + GY  +G +  Y+G TG  L A I+ GP YYQ+LKHMV DKIH+R RGP  +LTRQP
Sbjct: 502  LHKCGYQMRGFETMYNGHTGRKLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP 561

Query: 1367 TGRR 1370
               R
Sbjct: 562  AEGR 565



 Score =  100 bits (250), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 57/141 (40%), Positives = 79/141 (56%), Gaps = 24/141 (17%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVS-----ESGIRPGVT-----THLEIAPFTLLGVCA 741
           + D + +G IEY+D  E   + I+++      + +  GV      TH EI P  +LGVCA
Sbjct: 139 WHDLVAKGFIEYVDTEEEETTMISMTINDLVSARLNRGVAYSETYTHCEIHPSLILGVCA 198

Query: 742 GIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYA 801
            I              +P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y 
Sbjct: 199 SI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYP 244

Query: 802 QRPMVESKTIRITNFHKLPAG 822
           Q+P+V ++ +   +F +LPAG
Sbjct: 245 QKPLVTTRAMEHLHFRQLPAG 265



 Score = 50.4 bits (119), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 39/68 (57%), Gaps = 8/68 (11%)

Query: 270 TPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMFNGEELSS---PGVYLVF 326
           TPEG+ACGLVKNLALM +IT  +    +L+ +     E  +  N EE+S    P    +F
Sbjct: 1   TPEGQACGLVKNLALMVYITVGSAANPILEFL-----EEWSTENFEEISPAVIPQATKIF 55

Query: 327 VNGILAGI 334
           VNG   GI
Sbjct: 56  VNGCWVGI 63


>gi|133460|sp|P09845.2|RPOB1_METTW RecName: Full=DNA-directed RNA polymerase subunit B'
 gi|809726|emb|CAA30837.1| unnamed protein product [Methanothermobacter thermautotrophicus]
          Length = 604

 Score =  215 bits (547), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 106/265 (40%), Positives = 160/265 (60%), Gaps = 4/265 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            G++P+ +HN +PRNT +  M KQA+G    N   R DT  + L + Q P+V+++ I +T 
Sbjct: 137  GIIPFANHNSSPRNTMEAGMTKQALGLYASNYNLRTDTRAHLLHHPQVPIVKTRIIDVTG 196

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + + P+GQN  +AVMSY GY++EDALI+NKASL+RG  R   +R+ +   ++YP    DR
Sbjct: 197  YDERPSGQNFVVAVMSYEGYNMEDALILNKASLERGLARSSFFRSYEATERRYPGGQEDR 256

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMP---TISVSAISMATPE 1089
               P       +    +R LD+DGI+ P  ++    VL+ K+ P      +         
Sbjct: 257  FEIPEKGVRGYRSERDYRHLDEDGIINPETEVSSGDVLIGKTSPPRFLEEIDEFGTVAER 316

Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPE-IGDKFSSRHGQKGVIGL 1148
             +E  V+ +      ++ VL++   E + L K+ +R+ R+PE IGDKF+SRHGQKGV+GL
Sbjct: 317  RRETSVTVRHGEEGIVDAVLLTETVEGSRLAKIRVREQRQPEFIGDKFASRHGQKGVVGL 376

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            IV QEDMPF E G+ PD+I+NPH +
Sbjct: 377  IVSQEDMPFTEDGVVPDLIVNPHAI 401



 Score =  202 bits (514), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 99/191 (51%), Positives = 134/191 (70%), Gaps = 1/191 (0%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPE-IGDKFSSRHGQKGVIGLI 1241
            +E  V+ +      ++ VL++   E + L K+ +R+ R+PE IGDKF+SRHGQKGV+GLI
Sbjct: 318  RETSVTVRHGEEGIVDAVLLTETVEGSRLAKIRVREQRQPEFIGDKFASRHGQKGVVGLI 377

Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
            V QEDMPF E G+ PD+I+NPH  PSRM+VG+++E+LAGKA  MEG   +GT F G +  
Sbjct: 378  VSQEDMPFTEDGVVPDLIVNPHAIPSRMSVGQVLEMLAGKAACMEGRRVDGTPFTGEEEK 437

Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
            D++E L  +G+   G +  Y+GITGE +EA I+ G  YYQKL HM  D+I+ARSRGP  V
Sbjct: 438  DLKEALKANGFESAGVETLYNGITGERIEAEIFIGVAYYQKLHHMTTDRIYARSRGPVQV 497

Query: 1362 LTRQPTGRRWK 1372
            LTRQPT  R +
Sbjct: 498  LTRQPTEGRAR 508



 Score = 94.4 bits (233), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 50/136 (36%), Positives = 77/136 (56%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G   +DD + +G IEYLD  E  +++IA+S   +     THLEI P T+LG+CAGI    
Sbjct: 84  GEMEWDDLISQGIIEYLDAEEEENTYIAMSPEEVTEE-HTHLEIDPSTMLGICAGI---- 138

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                     +P+ +HN +PRNT +  M KQA+G    N   R DT  + L + Q P+V+
Sbjct: 139 ----------IPFANHNSSPRNTMEAGMTKQALGLYASNYNLRTDTRAHLLHHPQVPIVK 188

Query: 808 SKTIRITNFHKLPAGK 823
           ++ I +T + + P+G+
Sbjct: 189 TRIIDVTGYDERPSGQ 204


>gi|357216635|gb|AET71051.1| RNA polymerase II second largest subunit, partial [Lenzites
            betulinus]
          Length = 682

 Score =  215 bits (547), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 369  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLRF 428

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 429  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSVDRGLFRSMYYRSYMDLEKKSGIQQLEEF 488

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 489  EKPTRDTTLRMKHGTYDKLEDDGLIAPGTNVNGEDIIIGKTAPIPPDSEELGQRTRTHTK 548

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++N+E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 549  RDVSTPLKSTESGIIDQVLLTTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 608

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 609  RQEDMPFTAEGITPDIIINPHAI 631



 Score =  127 bits (318), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 59/134 (44%), Positives = 83/134 (61%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++N+E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 549  RDVSTPLKSTESGIIDQVLLTTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 608

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 609  RQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLSKVATLTGNEGDATPFTDLTVES 668

Query: 1303 VQEELIRHGYNYQG 1316
            V   L + GY  +G
Sbjct: 669  VSRFLXQRGYQSRG 682



 Score =  110 bits (275), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 94/151 (62%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++ +TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 40  EFNLSLAVKHNTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT 99

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNL+LM+ I+  +    +++ +  
Sbjct: 100 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSCISVGSLSAPVIEFLEE 159

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E  ++      S+P    VFVNG+  G+
Sbjct: 160 WGLE--SLEENAHSSTPCTK-VFVNGVWMGV 187



 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/100 (44%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LGVCA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 353 THCEIHPSMILGVCASI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYLTN 398

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 399 FLVRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNAI 438


>gi|302668317|ref|XP_003025731.1| hypothetical protein TRV_00102 [Trichophyton verrucosum HKI 0517]
 gi|291189857|gb|EFE45120.1| hypothetical protein TRV_00102 [Trichophyton verrucosum HKI 0517]
          Length = 1205

 Score =  215 bits (547), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 108/286 (37%), Positives = 169/286 (59%), Gaps = 3/286 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N + R++T+   L Y Q+P+  ++++    F
Sbjct: 787  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFEQRMETMANILYYPQKPLATTRSMEFLKF 846

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR      K       +R 
Sbjct: 847  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMIGLTVVERF 906

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAISMATPEYKE 1092
              P+     R     +  +D DGIV+PG ++    +++ K+ P       +   T ++ +
Sbjct: 907  EKPMRSDTLRMKHGTYDKVDDDGIVSPGVRVSGEDIIIGKTSPLAPEAEELGQRTKQHTK 966

Query: 1093 VPVS--YKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            + VS   + +    +++VLVS++++D   +K+ +R T+ P+IGDKF+SRHGQKG IG+  
Sbjct: 967  LDVSTPLRSTESGIVDQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITY 1026

Query: 1151 EQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSY 1196
              EDMPF   G+ PD+I+NPH +     I    E  +S   S+  Y
Sbjct: 1027 RHEDMPFTREGVTPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGY 1072



 Score =  179 bits (455), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 84/189 (44%), Positives = 119/189 (62%)

Query: 1184 EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVE 1243
            +V    + +    +++VLVS++++D   +K+ +R T+ P+IGDKF+SRHGQKG IG+   
Sbjct: 968  DVSTPLRSTESGIVDQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYR 1027

Query: 1244 QEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDV 1303
             EDMPF   G+ PD+I+NPH  PSRMT+  LIE    K   + G   + T F    +  V
Sbjct: 1028 HEDMPFTREGVTPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGYEGDATPFTDVTVDSV 1087

Query: 1304 QEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLT 1363
               L  HGY  +G ++ Y+G TG  L A ++ GP YYQ+L+HMV DKIHAR+RGP  +LT
Sbjct: 1088 SSLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHARARGPTQILT 1147

Query: 1364 RQPTGRRWK 1372
            RQP   R +
Sbjct: 1148 RQPVEGRAR 1156



 Score =  109 bits (273), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 56/144 (38%), Positives = 84/144 (58%), Gaps = 3/144 (2%)

Query: 192 MRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRK 250
           ++  T+T  L  A+ TGNW   ++    + GV+QVL+R +Y S L  + R N+   +  K
Sbjct: 470 VKASTLTGGLKYALATGNWGEQKKAASSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGK 529

Query: 251 VSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIA 310
           ++ PR L  + WG++CP++TPEG+ACGLVKNLALM  IT     + ++  M    +E + 
Sbjct: 530 IAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCCITVGTPSEPIIDFMIQRNMEVLE 589

Query: 311 MFNGEELSSPGVYLVFVNGILAGI 334
            F  E   SP    VFVNG+  G+
Sbjct: 590 EF--EPQVSPNSTKVFVNGVWVGV 611



 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/100 (42%), Positives = 59/100 (59%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 771 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 816

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
            + R++T+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 817 FEQRMETMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 856



 Score = 52.8 bits (125), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 44/78 (56%), Gaps = 2/78 (2%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMV-LALSDPDMLDDRDYYGNKRLELAG 514
           ARD +    + HI         KA +L  M+ R++  AL   D +DDRD++G KRL+LAG
Sbjct: 374 ARDIIQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRD-VDDRDHFGKKRLDLAG 432

Query: 515 SLLSLMFEDVFKRFNSEL 532
            LL+ +F  +F R   +L
Sbjct: 433 PLLANLFRVLFMRLTKDL 450


>gi|71841601|gb|AAZ43091.1| RNA polymerase II second largest subunit [Gunnera chilensis]
          Length = 534

 Score =  215 bits (547), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 109/270 (40%), Positives = 167/270 (61%), Gaps = 19/270 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 196  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHF 255

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L +R+ +           ++ 
Sbjct: 256  RELPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR---------DEEKK 306

Query: 1034 LGPLLEADTRKPV------YRHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            +G L++ D  +P        RH +   LD+DG+  PG ++    V++ K+ P        
Sbjct: 307  MGTLVKEDFGRPNRDNTMGMRHGSYDKLDEDGLAPPGTRVAGEDVIIGKTTPIAQDDTQG 366

Query: 1085 MATP-EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1143
             A+    ++   S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQK
Sbjct: 367  QASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQK 426

Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G +G+   QEDMP+   GI PDII+NPH +
Sbjct: 427  GTVGMTYTQEDMPWTLEGITPDIIVNPHAI 456



 Score =  143 bits (360), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 68/157 (43%), Positives = 98/157 (62%)

Query: 1187 VSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQED 1246
             S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   QED
Sbjct: 378  TSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 437

Query: 1247 MPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEE 1306
            MP+   GI PDII+NPH  PSRMT+G+LIE + GK     G   + T F    +  + + 
Sbjct: 438  MPWTLEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGQEGDATPFTEVTVDSISKA 497

Query: 1307 LIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKL 1343
            L + GY  +G +  Y+G TG  L A I+ GP YYQ+L
Sbjct: 498  LHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 534



 Score =  101 bits (252), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 57/141 (40%), Positives = 80/141 (56%), Gaps = 24/141 (17%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVS---ESGIRP-------GVTTHLEIAPFTLLGVCA 741
           + D + +G IEY+D  E   + I+++    + +R        G+ TH EI P  +LGVCA
Sbjct: 135 WHDLVSKGFIEYIDTEEEETTMISMTIQELANVRNVQQEAFYGLHTHCEIHPSLILGVCA 194

Query: 742 GIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYA 801
            I              +P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y 
Sbjct: 195 SI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYP 240

Query: 802 QRPMVESKTIRITNFHKLPAG 822
           Q+P+V ++ +   +F +LPAG
Sbjct: 241 QKPLVTTRAMEHLHFRELPAG 261


>gi|409051856|gb|EKM61332.1| hypothetical protein PHACADRAFT_247866 [Phanerochaete carnosa
            HHB-10118-sp]
          Length = 1237

 Score =  214 bits (546), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 105/263 (39%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 767  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKF 826

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 827  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSMYYRSYMDLEKKSGVQQLEEF 886

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 887  EKPTRDTTLRMKHGTYDKLEDDGLIAPGTGVNGEDIIIGKTAPIPPDSEELGQRTRTHTK 946

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++N+E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 947  RDVSTPLKSTESGIIDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 1006

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDI++NPH +
Sbjct: 1007 RQEDMPFTAEGITPDIVINPHAI 1029



 Score =  192 bits (489), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 90/188 (47%), Positives = 122/188 (64%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++N+E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 947  RDVSTPLKSTESGIIDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 1006

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDI++NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 1007 RQEDMPFTAEGITPDIVINPHAIPSRMTIGHLVECLLSKVATIVGNEGDATPFTDLTVES 1066

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
            V + L   GY  +G +I Y G TG  L+A +Y GP YYQ+LKHMV DKIH+R+RGP  +L
Sbjct: 1067 VSQILREQGYQSRGLEIMYHGHTGRKLQAQVYFGPTYYQRLKHMVDDKIHSRARGPVQIL 1126

Query: 1363 TRQPTGRR 1370
            TRQP   R
Sbjct: 1127 TRQPVEGR 1134



 Score =  109 bits (272), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 91/151 (60%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++ +TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 446 EFNLSLAVKHNTITNGLKYSLATGNWGDQKKSMSAKAGVSQVLNRYTYASTLSHLRRCNT 505

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNL+LM  I+  +    +++ +  
Sbjct: 506 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMACISVGSLSAPVIEFLEE 565

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E +        S+     VFVNG+  G+
Sbjct: 566 WGLESL---EENAHSTTPCTKVFVNGVWMGV 593



 Score = 86.7 bits (213), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 44/100 (44%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LGVCA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 751 THCEIHPSMILGVCASI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYLTN 796

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 797 FLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAI 836



 Score = 54.7 bits (130), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 57/114 (50%), Gaps = 22/114 (19%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A++ L    + HI         KA +   MI R++LA  +   LDDRD++G KRL+LAG 
Sbjct: 365 AQEILQKEMLPHI--------HKAYFFGYMIHRLLLAALERRDLDDRDHFGKKRLDLAGP 416

Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYGN 555
           LL+ +F  +F++   ++           KE NLS  V    + +G  + L  GN
Sbjct: 417 LLANLFRMLFRKLTRDVYRYLQKCVETHKEFNLSLAVKHNTITNGLKYSLATGN 470



 Score = 43.9 bits (102), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 29/44 (65%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSD 157
           D W ++ SF  +KGLV+  +DSFD F+   +++L+  NA++  D
Sbjct: 39  DCWHIISSFFDQKGLVRQQLDSFDEFVQNTMQELVDENADLILD 82



 Score = 41.2 bits (95), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 20/91 (21%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIE----YTRGSQRVVRSDLV----- 391
           + +P + E+        P E RLR+LTYSAP+ V+++      R        DLV     
Sbjct: 107 LSRPTVTEADGSVVPIFPQEARLRNLTYSAPLYVEMKKRTLVGREDPDSTTGDLVWEQEH 166

Query: 392 -----------IGRMPIMLQSSKCVLRNKTE 411
                      IG++PIML+S+ C+L   T+
Sbjct: 167 DESPEDTRKVWIGKVPIMLRSTFCILNKLTQ 197


>gi|300394762|gb|ADK11919.1| DNA-directed RNA polymerase II subunit two, partial [Tapinella
            atrotomentosa]
          Length = 650

 Score =  214 bits (546), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 160/263 (60%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 329  IIPFPDHNQSPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKF 388

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 389  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEF 448

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 449  EKPTRDTTLRMKHGTYDKLEDDGLIAPGTGVTGEDIIIGKTAPIPPDSEELGQRTRTHTR 508

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+S+N E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 509  RDVSTPLKSTENGIVDQVLISTNFEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 568

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PD+I+NPH +
Sbjct: 569  RQEDMPFTAEGIVPDLIINPHAI 591



 Score =  127 bits (319), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 61/141 (43%), Positives = 86/141 (60%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+S+N E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 509  RDVSTPLKSTENGIVDQVLISTNFEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 568

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PD+I+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 569  RQEDMPFTAEGIVPDLIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTELTVEA 628

Query: 1303 VQEELIRHGYNYQGKDIFYSG 1323
            V   L + GY  +G ++ Y G
Sbjct: 629  VSAFLRQKGYQSRGLEVMYHG 649



 Score =  110 bits (276), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 92/151 (60%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 22  EFNLSLAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT 81

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM  I+  +    +++ +  
Sbjct: 82  PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEE 141

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E  ++      S+P    VFVNG+  G+
Sbjct: 142 WGLE--SLEENAHSSTPCTK-VFVNGVWMGV 169



 Score = 87.8 bits (216), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 58/177 (32%), Positives = 88/177 (49%), Gaps = 22/177 (12%)

Query: 706 VNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQ 765
            N+G+    A  ++       TH EI P  +LG+CA I              +P+P HNQ
Sbjct: 292 ANDGDFDPAARLKASTNAHTWTHCEIHPSMILGICASI--------------IPFPDHNQ 337

Query: 766 APRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQ 825
           +PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  
Sbjct: 338 SPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNA 397

Query: 826 ISPGGAEELTARESCHEVLKIISFSISVAVFDSVWLG-----DVKQGVHQLSEEKEP 877
           I    A    +  +  + + +   SI   +F S++       + K GV QL E ++P
Sbjct: 398 IV---AILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKP 451


>gi|68131850|gb|AAY85203.1| RNA polymerase II second largest subunit [Dicentra formosa]
          Length = 873

 Score =  214 bits (546), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 109/270 (40%), Positives = 167/270 (61%), Gaps = 19/270 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 613  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHF 672

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L +R+ +           ++ 
Sbjct: 673  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR---------DEEKK 723

Query: 1034 LGPLLEADTRKPV------YRHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            +G L++ D  +P        RH +   LD DG+  PG ++    V++ K+ P     +  
Sbjct: 724  MGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDESQG 783

Query: 1085 MATP-EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1143
             A+    ++   S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQK
Sbjct: 784  QASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQK 843

Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G +G+   QEDMP+   GI PDII+NPH +
Sbjct: 844  GTVGMTYTQEDMPWTVEGITPDIIVNPHAI 873



 Score =  116 bits (290), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 62/146 (42%), Positives = 87/146 (59%), Gaps = 8/146 (5%)

Query: 192 MRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKV 251
           ++  TIT+ L  ++ TGNW        R GV+QVL+RL+Y S L  + R+NS   +  K+
Sbjct: 335 IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKL 394

Query: 252 SGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAM 311
           + PR L  S WGM+CP++TPEG+ACGLVKNLALM +IT  +    +L+ +     E  + 
Sbjct: 395 AKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFL-----EEWST 449

Query: 312 FNGEELSS---PGVYLVFVNGILAGI 334
            N EE+S    P    +FVNG   GI
Sbjct: 450 ENFEEISPAVIPQSTKIFVNGCWVGI 475



 Score =  100 bits (249), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 62/172 (36%), Positives = 85/172 (49%), Gaps = 40/172 (23%)

Query: 677 RPTFLNMHQFLGFKRFD----------------DFLYEGKIEYLDVNEGNDSHIAVSESG 720
           RP F+   Q L  K+ D                D + +G IEY+D  E   + I+++ + 
Sbjct: 521 RPLFIVEKQRLLIKKRDIRALQLRESPDEGGWHDLVAKGYIEYVDTEEEETTMISMTIND 580

Query: 721 IRPG----------VTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNT 770
           +               TH EI P  +LGVCA I              +P+P HNQ+PRNT
Sbjct: 581 LVSARLNPEEAYSETYTHCEIHPSLILGVCASI--------------IPFPDHNQSPRNT 626

Query: 771 YQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAG 822
           YQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F +LPAG
Sbjct: 627 YQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG 678



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/78 (47%), Positives = 54/78 (69%)

Query: 1187 VSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQED 1246
             S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   QED
Sbjct: 795  TSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 854

Query: 1247 MPFNESGICPDIIMNPHG 1264
            MP+   GI PDII+NPH 
Sbjct: 855  MPWTVEGITPDIIVNPHA 872



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 57/121 (47%), Gaps = 14/121 (11%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           K+  +  AR+ L    + H+ +       KA Y   +I R++L        DDRD+YGNK
Sbjct: 232 KEKRIKYAREILQKEMLPHVGIGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNK 291

Query: 509 RLELAGSLLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYG 554
           RL+LAG LL  +F  +F++   ++           K+ NL   +    + SG  + L  G
Sbjct: 292 RLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATG 351

Query: 555 N 555
           N
Sbjct: 352 N 352



 Score = 43.1 bits (100), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 19/68 (27%)

Query: 358 PHECRLRDLTYSAPITVDIEYTRGSQRVVR--------------SDLVIGRMPIMLQSSK 403
           P   RLR+LTYSAP+ VD+     ++R+++                + IG++PIML+SS 
Sbjct: 7   PKAARLRNLTYSAPLYVDV-----TKRIIKKGHDCEEVTETQEFKKVFIGKVPIMLRSSY 61

Query: 404 CVLRNKTE 411
           C L   +E
Sbjct: 62  CTLYQNSE 69


>gi|302507686|ref|XP_003015804.1| hypothetical protein ARB_06116 [Arthroderma benhamiae CBS 112371]
 gi|291179372|gb|EFE35159.1| hypothetical protein ARB_06116 [Arthroderma benhamiae CBS 112371]
          Length = 1205

 Score =  214 bits (546), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 108/286 (37%), Positives = 169/286 (59%), Gaps = 3/286 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N + R++T+   L Y Q+P+  ++++    F
Sbjct: 787  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFEQRMETMANILYYPQKPLATTRSMEFLKF 846

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR      K       +R 
Sbjct: 847  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMIGLTVVERF 906

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAISMATPEYKE 1092
              P+     R     +  +D DGIV+PG ++    +++ K+ P       +   T ++ +
Sbjct: 907  EKPMRSDTLRMKHGTYDKVDDDGIVSPGVRVSGEDIIIGKTSPLAPEAEELGQRTKQHTK 966

Query: 1093 VPVS--YKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            + VS   + +    +++VLVS++++D   +K+ +R T+ P+IGDKF+SRHGQKG IG+  
Sbjct: 967  LDVSTPLRSTESGIVDQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITY 1026

Query: 1151 EQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSY 1196
              EDMPF   G+ PD+I+NPH +     I    E  +S   S+  Y
Sbjct: 1027 RHEDMPFTREGVTPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGY 1072



 Score =  179 bits (455), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 84/189 (44%), Positives = 119/189 (62%)

Query: 1184 EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVE 1243
            +V    + +    +++VLVS++++D   +K+ +R T+ P+IGDKF+SRHGQKG IG+   
Sbjct: 968  DVSTPLRSTESGIVDQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYR 1027

Query: 1244 QEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDV 1303
             EDMPF   G+ PD+I+NPH  PSRMT+  LIE    K   + G   + T F    +  V
Sbjct: 1028 HEDMPFTREGVTPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGYEGDATPFTDVTVDSV 1087

Query: 1304 QEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLT 1363
               L  HGY  +G ++ Y+G TG  L A ++ GP YYQ+L+HMV DKIHAR+RGP  +LT
Sbjct: 1088 SSLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHARARGPTQILT 1147

Query: 1364 RQPTGRRWK 1372
            RQP   R +
Sbjct: 1148 RQPVEGRAR 1156



 Score =  109 bits (273), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 56/144 (38%), Positives = 84/144 (58%), Gaps = 3/144 (2%)

Query: 192 MRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRK 250
           ++  T+T  L  A+ TGNW   ++    + GV+QVL+R +Y S L  + R N+   +  K
Sbjct: 470 VKASTLTGGLKYALATGNWGEQKKAASSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGK 529

Query: 251 VSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIA 310
           ++ PR L  + WG++CP++TPEG+ACGLVKNLALM  IT     + ++  M    +E + 
Sbjct: 530 IAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCCITVGTPSEPIIDFMIQRNMEVLE 589

Query: 311 MFNGEELSSPGVYLVFVNGILAGI 334
            F  E   SP    VFVNG+  G+
Sbjct: 590 EF--EPQVSPNSTKVFVNGVWVGV 611



 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/100 (42%), Positives = 59/100 (59%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 771 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 816

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
            + R++T+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 817 FEQRMETMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 856



 Score = 52.8 bits (125), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 44/78 (56%), Gaps = 2/78 (2%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMV-LALSDPDMLDDRDYYGNKRLELAG 514
           ARD +    + HI         KA +L  M+ R++  AL   D +DDRD++G KRL+LAG
Sbjct: 374 ARDIIQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRD-VDDRDHFGKKRLDLAG 432

Query: 515 SLLSLMFEDVFKRFNSEL 532
            LL+ +F  +F R   +L
Sbjct: 433 PLLANLFRVLFMRLTKDL 450


>gi|123979372|gb|ABM81511.1| RNA polymerase II second largest subunit [Rhizocarpon superficiale]
          Length = 703

 Score =  214 bits (546), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 108/264 (40%), Positives = 163/264 (61%), Gaps = 5/264 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q P+  ++++    F
Sbjct: 362  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDQRMDTMANILYYPQNPLATTRSMEFLKF 421

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR      K+      ++ 
Sbjct: 422  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSVDRGLFRSLFYRAYTDQEKRVGTSVVEQF 481

Query: 1034 LGPLLEADTRKPVY-RHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAISMATPEY- 1090
              P + +DT K  +  +  LD DGIVAPG +I    +++ K+ P       +   T  + 
Sbjct: 482  EKP-MRSDTLKLKHGTYDKLDDDGIVAPGVRISGEDIIIGKTAPIAPDAEELGQRTKLHV 540

Query: 1091 -KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             ++V    + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHGQKG IG+ 
Sbjct: 541  KRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGIT 600

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
              QEDMPF   GI PD+I+NPH +
Sbjct: 601  YRQEDMPFTSEGIVPDLIINPHAI 624



 Score =  147 bits (371), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 80/231 (34%), Positives = 125/231 (54%), Gaps = 13/231 (5%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESG-ICPDIIMNPHGL 1173
            ++ Q  +P   D    +HG        G++  G+ +  ED+   ++  I PD       L
Sbjct: 477  VVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRISGEDIIIGKTAPIAPDA----EEL 532

Query: 1174 KGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
                ++   ++V    + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHG
Sbjct: 533  GQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHG 592

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGT 1293
            QKG IG+   QEDMPF   GI PD+I+NPH  PSRMT+  LIE    K   + G   + T
Sbjct: 593  QKGTIGITYRQEDMPFTSEGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDAT 652

Query: 1294 AFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLK 1344
             F    +  V   L  HGY  +G ++ Y+G TG  L A ++ GP YYQ+L+
Sbjct: 653  PFTDVTVDSVSSLLREHGYQSRGFEVMYNGHTGRKLAAQVFLGPTYYQRLR 703



 Score =  109 bits (272), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 52/151 (34%), Positives = 90/151 (59%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  T+T+ L  ++ TGNW   ++    + GV+QVL+R ++ S L  + R N+
Sbjct: 39  EFNLTLGVKSTTLTSGLKYSLATGNWGEQKKAASSKAGVSQVLNRYTFASTLSHLRRTNT 98

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT     + ++  M  
Sbjct: 99  PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMVQ 158

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
             ++ +  +  E  S P    +FVNG+  G+
Sbjct: 159 RSMDLLEEY--EPQSYPNATKIFVNGVWVGV 187



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 57/100 (57%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 346 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 391

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q P+  ++++    F +LPAG+  I
Sbjct: 392 YDQRMDTMANILYYPQNPLATTRSMEFLKFRELPAGQNAI 431


>gi|52699768|gb|AAU86946.1| DNA-dependent RNA polymerase II second largest subunit [Acarospora
            bullata]
          Length = 727

 Score =  214 bits (546), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 107/264 (40%), Positives = 166/264 (62%), Gaps = 5/264 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 377  IIPFPDHNQSPRNTYQSAMGKQAMGVYLTNYDQRMDTMANILYYPQKPLATTRSMEFLKF 436

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR+     K+      ++ 
Sbjct: 437  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSVVEQF 496

Query: 1034 LGPLLEADTRKPVY-RHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAISMATPEY- 1090
              P + +DT K  +  +  LD DGIVAPG ++    +++ K+ P       +   T  + 
Sbjct: 497  EKP-MRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKLHV 555

Query: 1091 -KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             ++V    + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHGQKG IG+ 
Sbjct: 556  KRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGIT 615

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
              QEDMPF + GI PD+I+NPH +
Sbjct: 616  YRQEDMPFTKEGIVPDLIINPHAI 639



 Score =  157 bits (398), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 87/240 (36%), Positives = 133/240 (55%), Gaps = 13/240 (5%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESG-ICPDIIMNPHGL 1173
            ++ Q  +P   D    +HG        G++  G+ V  ED+   ++  I PD       L
Sbjct: 492  VVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPD----AEEL 547

Query: 1174 KGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
                ++   ++V    + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHG
Sbjct: 548  GQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHG 607

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGT 1293
            QKG IG+   QEDMPF + GI PD+I+NPH  PSRMT+  LIE    K   + G   + T
Sbjct: 608  QKGTIGITYRQEDMPFTKEGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDAT 667

Query: 1294 AFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHA 1353
             F    +  V + L  HGY  +G ++ Y+G TG  L A ++ GP YYQ+L+HMV  KI A
Sbjct: 668  PFTEITVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDXKIXA 727



 Score =  113 bits (282), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 90/151 (59%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW   ++    + GV+QVL+R ++ S L  + R N+
Sbjct: 40  EFNLTLGVKSTTITNGLKYSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNT 99

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM +I+     + ++  M  
Sbjct: 100 PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYISVGTPSEPIIDFMVQ 159

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
             +E +  +  E   SP    VFVNG+  G+
Sbjct: 160 RNMEVLEEY--EPQRSPNATKVFVNGVWVGV 188



 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 361 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVYLTN 406

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 407 YDQRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 446


>gi|83415445|gb|ABC17930.1| RNA polymerase II second largest subunit, partial [Allomyces
            arbuscula]
          Length = 584

 Score =  214 bits (546), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 103/261 (39%), Positives = 164/261 (62%), Gaps = 2/261 (0%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL   L Y Q+P+V +++++   F
Sbjct: 324  IIPFPDHNQSPRNTYQSAMGKQAMGLYLTNFQXRMDTLANILYYPQKPLVATRSMKYLRF 383

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R + YR      K+      +  
Sbjct: 384  RELPAGQNAVVAIAVYSGYNQEDSIIMNQSSIDRGLFRSIYYRAYMDQEKKSGFSDVETF 443

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKS--MPTISVSAISMATPEYK 1091
              P  E   +     +  +++DG+VAPG ++    +++ K+  +P  +    +  T   K
Sbjct: 444  EKPTRETTLKLRHGSYDKIEEDGLVAPGTRVTGDDIIIGKTAPLPPDTSEMGARTTQTXK 503

Query: 1092 EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVE 1151
            +V  S K +    ++ V++++N++    +K+ +R TR P++GDKF+SRHGQKG +G+   
Sbjct: 504  DVSTSLKSTEQGIVDHVMLTTNNDGYKFVKVRVRSTRVPQMGDKFASRHGQKGTVGMTYR 563

Query: 1152 QEDMPFNESGICPDIIMNPHG 1172
            QEDMPF+  G+ PD+I+NPH 
Sbjct: 564  QEDMPFSADGVTPDLIVNPHA 584



 Score =  113 bits (283), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 61/157 (38%), Positives = 95/157 (60%), Gaps = 9/157 (5%)

Query: 182 KAAQFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTR 240
           +  +F++   +  +TITN L  A+ TGNW  ++  ME R GV+QVL+R ++ S L  + R
Sbjct: 21  RGREFNLNMAINSNTITNGLRYALATGNWGDQKKFMETRAGVSQVLNRYTFASTLSHLRR 80

Query: 241 INSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKI 300
           +N+   +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM +I+  +    +L+ 
Sbjct: 81  LNTPIGREGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMAYISVGSASGPILEF 140

Query: 301 MYNIGIEHIAMFNGEELSSPGV---YLVFVNGILAGI 334
           +     E     N EE+++  +     VFVNG   GI
Sbjct: 141 L-----EEWTTENLEEITASAIGSNTKVFVNGSWVGI 172



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 61/190 (32%), Positives = 88/190 (46%), Gaps = 54/190 (28%)

Query: 677 RPTFL-NMHQFLGFKR------------FDDFLYEGKIEYLDVNEGNDSHIAVS------ 717
           RP F+ N  Q L  +R            ++D L  G +EYLD  E   + I ++      
Sbjct: 218 RPLFIVNEQQQLVLRRDHVARLEVGEWGWEDLLANGIVEYLDTEEEETTMICMTPDDLAE 277

Query: 718 ---------------------ESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPG 756
                                ++G      +H EI P  +LG+CA I             
Sbjct: 278 SRGDPIPDKSKLDKTARLKSRKAGDVCKQWSHCEIHPSMILGICASI------------- 324

Query: 757 LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 816
            +P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL   L Y Q+P+V +++++   F
Sbjct: 325 -IPFPDHNQSPRNTYQSAMGKQAMGLYLTNFQXRMDTLANILYYPQKPLVATRSMKYLRF 383

Query: 817 HKLPAGKCQI 826
            +LPAG+  +
Sbjct: 384 RELPAGQNAV 393



 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 58/82 (70%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            K+V  S K +    ++ V++++N++    +K+ +R TR P++GDKF+SRHGQKG +G+  
Sbjct: 503  KDVSTSLKSTEQGIVDHVMLTTNNDGYKFVKVRVRSTRVPQMGDKFASRHGQKGTVGMTY 562

Query: 1243 EQEDMPFNESGICPDIIMNPHG 1264
             QEDMPF+  G+ PD+I+NPH 
Sbjct: 563  RQEDMPFSADGVTPDLIVNPHA 584


>gi|16488|emb|CAA79527.1| RNA polymerase II second largest subunit [Arabidopsis thaliana]
          Length = 1188

 Score =  214 bits (546), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 110/271 (40%), Positives = 169/271 (62%), Gaps = 21/271 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 718  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 777

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L +R+ +           ++ 
Sbjct: 778  RQLPAGINANVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR---------DEEKK 828

Query: 1034 LGPLLEADTRKPV------YRHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            +G L++ D  +P        RH +   LD DG+  PG ++    V++ K+ P IS     
Sbjct: 829  MGTLVKEDFGRPDRGSTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP-ISQDEAQ 887

Query: 1085 MATPEY--KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQ 1142
              +  Y  ++  +S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQ
Sbjct: 888  GQSSRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 947

Query: 1143 KGVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            KG +G+   QEDMP+   G+ PDII+NPH +
Sbjct: 948  KGTVGMTYTQEDMPWTIEGVTPDIIVNPHAI 978



 Score =  179 bits (454), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 85/184 (46%), Positives = 120/184 (65%)

Query: 1187 VSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQED 1246
            +S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   QED
Sbjct: 900  ISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 959

Query: 1247 MPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEE 1306
            MP+   G+ PDII+NPH  PSRMT+G+LIE + GK     G   + T F    + ++ + 
Sbjct: 960  MPWTIEGVTPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 1019

Query: 1307 LIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQP 1366
            L + GY  +G +  Y+G TG  L A I+ GP YYQ+LKHMV DKIH+R RGP  +LTRQP
Sbjct: 1020 LHKCGYQMRGFERMYNGHTGRPLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP 1079

Query: 1367 TGRR 1370
               R
Sbjct: 1080 AEGR 1083



 Score =  120 bits (301), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 63/146 (43%), Positives = 89/146 (60%), Gaps = 8/146 (5%)

Query: 192 MRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKV 251
           ++  TIT+ L  ++ TGNW        R GV+QVL+RL+Y S L  + R+NS   +  K+
Sbjct: 440 IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKL 499

Query: 252 SGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAM 311
           + PR L  SQWGM+CP++TPEG+ACGLVKNLALM +IT  +    +L+ +   G E    
Sbjct: 500 AKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTE---- 555

Query: 312 FNGEELSS---PGVYLVFVNGILAGI 334
            N EE+S    P    +FVNG+  G+
Sbjct: 556 -NFEEISPSVIPQATKIFVNGMWVGV 580



 Score =  100 bits (248), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 56/138 (40%), Positives = 78/138 (56%), Gaps = 24/138 (17%)

Query: 695 FLYEGKIEYLDVNEGNDSHIAVS-----ESGIRPGVT-----THLEIAPFTLLGVCAGIE 744
            + +G IEY+D  E   + I+++     ++ +RP        TH EI P  +LGVCA I 
Sbjct: 660 LVAKGFIEYIDTEEEETTMISMTISDLVQARLRPEEAYTENYTHCEIHPSLILGVCASI- 718

Query: 745 LLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRP 804
                        +P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P
Sbjct: 719 -------------IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKP 765

Query: 805 MVESKTIRITNFHKLPAG 822
           +V ++ +   +F +LPAG
Sbjct: 766 LVTTRAMEHLHFRQLPAG 783



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 57/121 (47%), Gaps = 14/121 (11%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           K+  +  ARD L    + ++ +       KA Y   +I R++L        DDRD+YGNK
Sbjct: 337 KEKRIKYARDILQKEMLLYVGIGEHCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNK 396

Query: 509 RLELAGSLLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYG 554
           RL+LAG LL  +F  +F++   ++           KE NL   +    + SG  + L  G
Sbjct: 397 RLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKEVNLQFAIKAKTITSGLKYSLATG 456

Query: 555 N 555
           N
Sbjct: 457 N 457



 Score = 48.9 bits (115), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 19/85 (22%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVR------------- 387
           + KP + ES   T    P   RLR+LTYSAP+ VD+     ++RV++             
Sbjct: 95  LSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV-----TKRVIKKGHDGEEVTETQD 149

Query: 388 -SDLVIGRMPIMLQSSKCVLRNKTE 411
            + + IG++PIML+SS C L   +E
Sbjct: 150 FTKVFIGKVPIMLRSSYCTLFQNSE 174


>gi|341859024|gb|AEK97422.1| ribosomal polymerase II second largest subunit [Beauveria bassiana]
          Length = 703

 Score =  214 bits (546), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 102/263 (38%), Positives = 162/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 362  IIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSMEFLKF 421

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L +R+     K+      +  
Sbjct: 422  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYSDQEKKVGLNYTEIF 481

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  ++  R     +  LD+DGIVAPG ++    +++ K+ P  S +          + 
Sbjct: 482  EKPFHQSTLRMKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAPIDSETQDLGARTTAHQR 541

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            +++    + +    +++V+V+ N+++   +K+ +R T+ P+IGDKF+SRHGQKG IG+  
Sbjct: 542  RDISTPLRSTENGIVDQVIVTVNADNVKYVKVRVRTTKIPQIGDKFASRHGQKGTIGVTY 601

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   G+ PDII+NPH +
Sbjct: 602  RQEDMPFTREGVTPDIIINPHAI 624



 Score =  150 bits (378), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 68/162 (41%), Positives = 104/162 (64%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            +++    + +    +++V+V+ N+++   +K+ +R T+ P+IGDKF+SRHGQKG IG+  
Sbjct: 542  RDISTPLRSTENGIVDQVIVTVNADNVKYVKVRVRTTKIPQIGDKFASRHGQKGTIGVTY 601

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   G+ PDII+NPH  PSRMT+  LIE L  K   +EG   + T F    +  
Sbjct: 602  RQEDMPFTREGVTPDIIINPHAIPSRMTIAHLIECLLSKVSTLEGMEGDATPFTDVTVDS 661

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLK 1344
            V + L +HGY  +G +I Y+G TG+ L A ++ GP YYQ+L+
Sbjct: 662  VSDLLRKHGYQSRGFEIMYNGHTGKKLRAQVFFGPTYYQRLR 703



 Score =  111 bits (277), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 91/151 (60%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMER-QGVTQVLSRLSYISGLGMMTRINS 243
            F++   ++  T++N L  ++ TGNW  ++  M    GV+QVL+R ++ S L  + R N+
Sbjct: 40  HFNLAVGVKPGTLSNGLKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNT 99

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNL+LM +++  +  + ++  M N
Sbjct: 100 PIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSPAEPLIDFMIN 159

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E I  +  E L  P    +FVNG   G+
Sbjct: 160 RGMEVIEEY--EPLRYPHATKIFVNGTWVGV 188



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 346 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGFFLTN 391

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 392 YSRRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 431


>gi|300394668|gb|ADK11872.1| DNA-directed RNA polymerase II subunit two, partial [Athelia sp.
            HHB-15599]
          Length = 676

 Score =  214 bits (546), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 105/263 (39%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 345  IIPFPDHNQSPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKF 404

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 405  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSVDRGLFRSIYYRSYMDLEKKSGIQQLEEF 464

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  ++ DG++APG  +    +++ K+ P    S        T   
Sbjct: 465  EKPTRDNTLRMKHGTYDKIEDDGLIAPGTGVSGEDIIIGKTAPIPPDSEELGQRTRTHTR 524

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG +G+  
Sbjct: 525  RDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRATRIPQIGDKFASRHGQKGTVGITY 584

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 585  RQEDMPFTAEGIVPDIIINPHAI 607



 Score =  139 bits (350), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 80/219 (36%), Positives = 116/219 (52%), Gaps = 11/219 (5%)

Query: 1124 LRQTRRPEIGDKFSSRHGQKGVI---GLI-----VEQEDMPFNESGICPDIIMNPHGLKG 1175
            L +  +P   +    +HG    I   GLI     V  ED+   ++   P    +   L  
Sbjct: 461  LEEFEKPTRDNTLRMKHGTYDKIEDDGLIAPGTGVSGEDIIIGKTAPIPP---DSEELGQ 517

Query: 1176 CDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1235
              R    ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQK
Sbjct: 518  RTRTHTRRDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRATRIPQIGDKFASRHGQK 577

Query: 1236 GVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAF 1295
            G +G+   QEDMPF   GI PDII+NPH  PSRMT+G LIE L  K   + GN  + T F
Sbjct: 578  GTVGITYRQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLIECLLSKVATLIGNEGDATPF 637

Query: 1296 GGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIY 1334
                +  V   L + GY  +G ++ Y G +G  L+A +Y
Sbjct: 638  TDLTVESVSTFLRQKGYQSRGLEVMYHGHSGRKLQAQVY 676



 Score =  111 bits (277), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 93/151 (61%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 39  EFNLSLAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT 98

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM+ I+  +    +++ +  
Sbjct: 99  PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSLSAPVIEFLEE 158

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E  ++      S+P    VFVNG+  G+
Sbjct: 159 WGLE--SLEENAHSSTPCTK-VFVNGVWMGV 186



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/120 (39%), Positives = 65/120 (54%), Gaps = 14/120 (11%)

Query: 707 NEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQA 766
           N+G     A  ++G      TH EI P  +LG+CA I              +P+P HNQ+
Sbjct: 309 NDGEFDPAARLKAGTNTHTWTHCEIHPSMILGICASI--------------IPFPDHNQS 354

Query: 767 PRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
           PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 355 PRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAI 414


>gi|320172600|gb|ADW24183.1| RNA polymerase II second largest subunit [Veluticeps berkeleyi]
          Length = 679

 Score =  214 bits (546), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 163/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 351  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLRF 410

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 411  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEF 470

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS-AISMATPEY-- 1090
              P  +   R     +  L+ DG++APG  +    +++ K+ P    S  +   T  +  
Sbjct: 471  EKPTRDTTLRMKHGTYDKLEDDGLIAPGTGVNGEDIIIGKTAPIPPDSEELGQRTRSHTR 530

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V  + K +    +++VL+++N E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 531  RDVSTAMKSTEQGIVDQVLITTNHEGQKFVKVRIRSTRVPQIGDKFASRHGQKGTIGITY 590

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 591  RQEDMPFTAEGITPDIIINPHAI 613



 Score =  138 bits (348), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 65/149 (43%), Positives = 92/149 (61%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V  + K +    +++VL+++N E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 531  RDVSTAMKSTEQGIVDQVLITTNHEGQKFVKVRIRSTRVPQIGDKFASRHGQKGTIGITY 590

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 591  RQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLSKVATLTGNEGDATPFTDLTVES 650

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEA 1331
            V + L   GY  +G ++ Y G TG  L+A
Sbjct: 651  VSQFLREKGYQSRGLEVMYHGHTGRKLQA 679



 Score =  110 bits (276), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 57/160 (35%), Positives = 98/160 (61%), Gaps = 4/160 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++ +TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 44  EFNLSLAVKHNTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT 103

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM  I+  +    +++ +  
Sbjct: 104 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMACISVGSLSAPVIEFLEE 163

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGITCHHKEVCK 343
            G+E  ++      ++P    VFVNG+  G+  + +++ K
Sbjct: 164 WGLE--SLEENAHSATPCTK-VFVNGVWMGVHRNPQDLVK 200



 Score = 86.7 bits (213), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 56/156 (35%), Positives = 81/156 (51%), Gaps = 22/156 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LGVCA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 335 THCEIHPSMILGVCASI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYLTN 380

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQISPGGAEELTARESCHEVLKI 846
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I    A    +  +  + + +
Sbjct: 381 FLVRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNAIV---AILCYSGYNQEDSVIM 437

Query: 847 ISFSISVAVFDSVWLG-----DVKQGVHQLSEEKEP 877
              SI   +F S++       + K GV QL E ++P
Sbjct: 438 NQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKP 473


>gi|68131836|gb|AAY85196.1| RNA polymerase II second largest subunit [Chimonanthus praecox]
          Length = 906

 Score =  214 bits (546), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 111/271 (40%), Positives = 168/271 (61%), Gaps = 21/271 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 612  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHF 671

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L +R+ +           ++ 
Sbjct: 672  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR---------DEEKK 722

Query: 1034 LGPLLEADTRKPV------YRHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            +G L++ D  +P        RH +   LD DG+  PG ++    V++ K+ P I+     
Sbjct: 723  MGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSP-IAQDESQ 781

Query: 1085 MATPEY--KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQ 1142
              T  Y  ++   S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQ
Sbjct: 782  GQTSRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRVPQIGDKFSSRHGQ 841

Query: 1143 KGVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            KG +G+   QEDMP+   GI PDII+NPH +
Sbjct: 842  KGTVGMTYTQEDMPWTLEGITPDIIVNPHAI 872



 Score =  114 bits (285), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 60/146 (41%), Positives = 87/146 (59%), Gaps = 8/146 (5%)

Query: 192 MRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKV 251
           ++  T+T+ L  ++ TGNW        R GV+QVL+RL++ S L  + R+NS   +  K+
Sbjct: 335 IKAKTVTSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTFASTLSHLRRLNSPIGREGKL 394

Query: 252 SGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAM 311
           + PR L  S WGM+CP++TPEG+ACGLVKNLALM +IT  +    +L+ +     E  + 
Sbjct: 395 AKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEFL-----EEWST 449

Query: 312 FNGEELSS---PGVYLVFVNGILAGI 334
            N EE+S    P    +FVNG   GI
Sbjct: 450 ENFEEISPAVIPQATKIFVNGCWVGI 475



 Score =  112 bits (280), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 51/109 (46%), Positives = 72/109 (66%)

Query: 1187 VSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQED 1246
             S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   QED
Sbjct: 794  TSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRVPQIGDKFSSRHGQKGTVGMTYTQED 853

Query: 1247 MPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAF 1295
            MP+   GI PDII+NPH  PSRMT+G+LIE + GK     G   + T F
Sbjct: 854  MPWTLEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPF 902



 Score =  101 bits (252), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 63/171 (36%), Positives = 85/171 (49%), Gaps = 39/171 (22%)

Query: 677 RPTFLNMHQFLGFKRFD---------------DFLYEGKIEYLDVNEGNDSHIAVSESGI 721
           RP F+   Q L  K+ D               D + +G IEY+D  E   + I+++ S +
Sbjct: 521 RPLFIVEKQRLLIKKKDIRVLQQRETQEEGWHDLVAKGFIEYVDTEEEETTMISMTISDL 580

Query: 722 RPG----------VTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTY 771
                          TH EI P  +LGVCA I              +P+P HNQ+PRNTY
Sbjct: 581 VSARLNPEEAYSDTYTHCEIHPSLILGVCASI--------------IPFPDHNQSPRNTY 626

Query: 772 QCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAG 822
           Q AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F +LPAG
Sbjct: 627 QSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG 677



 Score = 52.8 bits (125), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 56/121 (46%), Gaps = 14/121 (11%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           K+  +  A++ L    + H+         KA Y   +I R++L        DDRD+YGNK
Sbjct: 232 KEKRIKYAKEILQKEMLPHVGTGEYCETKKAYYFGYIIHRLLLCAIGRRPEDDRDHYGNK 291

Query: 509 RLELAGSLLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYG 554
           RL+LAG LL  +F  +F++   ++           K+ NL   +    + SG  + L  G
Sbjct: 292 RLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTVTSGLKYSLATG 351

Query: 555 N 555
           N
Sbjct: 352 N 352



 Score = 42.7 bits (99), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 19/68 (27%)

Query: 358 PHECRLRDLTYSAPITVDIEYTRGSQRVVR--------------SDLVIGRMPIMLQSSK 403
           P   RLR+LTYSAP+ VD+     ++R+++              + + IG++PIML+SS 
Sbjct: 7   PKAARLRNLTYSAPLYVDV-----TKRIIKKGHDCEEVTETQEFTKVFIGKVPIMLRSSY 61

Query: 404 CVLRNKTE 411
           C +   +E
Sbjct: 62  CTVYQNSE 69


>gi|357216651|gb|AET71059.1| RNA polymerase II second largest subunit, partial [Coriolopsis
            gallica]
          Length = 657

 Score =  214 bits (546), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 105/263 (39%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 346  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLRF 405

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 406  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEF 465

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 466  EKPTRDTTLRMKHGTYDKLEDDGLIAPGTNVNGEDIIIGKTAPIPPDSEELGQRTRTHTK 525

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++N+E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 526  RDVSTPLKSTEQGIVDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 585

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDI++NPH +
Sbjct: 586  RQEDMPFTAEGITPDIVINPHAI 608



 Score =  122 bits (307), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 57/131 (43%), Positives = 83/131 (63%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++N+E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 526  RDVSTPLKSTEQGIVDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 585

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDI++NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 586  RQEDMPFTAEGITPDIVINPHAIPSRMTIGHLVECLLSKLATLIGNEGDATPFTDLTVES 645

Query: 1303 VQEELIRHGYN 1313
            V + L + GY+
Sbjct: 646  VSKFLRQKGYH 656



 Score =  111 bits (277), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 93/151 (61%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++ +TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 40  EFNLSLAVKHNTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT 99

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNL+LM+ I+       +++ +  
Sbjct: 100 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSCISVGTLSAPVIEFLEE 159

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E  ++      S+P    VFVNG+  G+
Sbjct: 160 WGLE--SLEENAHASTPCTK-VFVNGVWMGV 187



 Score = 90.1 bits (222), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 69/220 (31%), Positives = 99/220 (45%), Gaps = 51/220 (23%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVS----------ESGIRPGVT--------------- 726
           +D+ + EG IE LD  E     I ++           SGI P                  
Sbjct: 266 WDNLIKEGVIELLDAEEEETVMICMTPEDLENSRLQASGIDPHADEENDDPSARLKAATS 325

Query: 727 ----THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGC 782
               TH EI P  +LGVCA I              +P+P HNQ+PRNTYQ AMGKQAMG 
Sbjct: 326 AHTWTHCEIHPSMILGVCASI--------------IPFPDHNQSPRNTYQSAMGKQAMGI 371

Query: 783 IGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQISPGGAEELTARESCHE 842
              N   R+DT+   L Y Q+P+  ++++    F +LPAG+  I    A    +  +  +
Sbjct: 372 YLTNFLVRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNAIV---AILCYSGYNQED 428

Query: 843 VLKIISFSISVAVFDSVWLG-----DVKQGVHQLSEEKEP 877
            + +   SI   +F S++       + K GV QL E ++P
Sbjct: 429 SVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKP 468


>gi|70794970|gb|AAZ08459.1| RNA polymerase II second largest subunit [Astilbe sp. Yoshikawa s.n.]
          Length = 951

 Score =  214 bits (546), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 110/270 (40%), Positives = 167/270 (61%), Gaps = 19/270 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 613  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 672

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L +R+ +           ++ 
Sbjct: 673  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR---------DEEKK 723

Query: 1034 LGPLLEADTRKP------VYRHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            +G L++ D  +P        RH +   LD DG+  PG ++    V++ K+ P     +  
Sbjct: 724  MGTLVKEDFGRPNRNDTMNMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIAQDESQG 783

Query: 1085 MATPEYK-EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1143
             A+   K +   S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQK
Sbjct: 784  QASRYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQK 843

Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G +G+   QEDMP+   GI PDII+NPH +
Sbjct: 844  GTVGMTYTQEDMPWTVEGITPDIIVNPHAI 873



 Score =  143 bits (360), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 68/157 (43%), Positives = 99/157 (63%)

Query: 1187 VSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQED 1246
             S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   QED
Sbjct: 795  TSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 854

Query: 1247 MPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEE 1306
            MP+   GI PDII+NPH  PSRMT+G+LIE + GK     G   + T F    + ++ + 
Sbjct: 855  MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 914

Query: 1307 LIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKL 1343
            L + GY  +G +  Y+G TG  L A I+ GP YYQ+L
Sbjct: 915  LHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 951



 Score =  119 bits (299), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 64/146 (43%), Positives = 88/146 (60%), Gaps = 8/146 (5%)

Query: 192 MRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKV 251
           ++  TIT+ L  ++ TGNW        R GV+QVL+RL+Y S L  + R+NS   +  K+
Sbjct: 335 IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKL 394

Query: 252 SGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAM 311
           + PR L  SQWGM+CP++TPEG+ACGLVKNLALM +IT  +    +L+ +   G E    
Sbjct: 395 AKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTE---- 450

Query: 312 FNGEELSS---PGVYLVFVNGILAGI 334
            N EE+S    P    +FVNG   GI
Sbjct: 451 -NFEEISPAVIPEATKIFVNGCWVGI 475



 Score = 99.4 bits (246), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/141 (39%), Positives = 78/141 (55%), Gaps = 24/141 (17%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVS-----ESGIRPGVT-----THLEIAPFTLLGVCA 741
           + D + +G IEY+D  E   + I+++      + + P        TH EI P  +LGVCA
Sbjct: 552 WHDLVAKGFIEYVDTEEEETTMISMTINDLVSARLNPEEAYSEYYTHCEIHPSLILGVCA 611

Query: 742 GIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYA 801
            I              +P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y 
Sbjct: 612 SI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYP 657

Query: 802 QRPMVESKTIRITNFHKLPAG 822
           Q+P+V ++ +   +F +LPAG
Sbjct: 658 QKPLVTTRAMEHLHFRQLPAG 678



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 14/114 (12%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           AR+ L    + H+ +       KA Y   +I R++L        DDRD+YGNKRL+LAG 
Sbjct: 239 AREILQKEMLPHVGMAEYCETKKAYYFGYIIHRLLLVALGRRAEDDRDHYGNKRLDLAGP 298

Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYGN 555
           LL  +F  +F++   ++           K+ NL   +    + SG  + L  GN
Sbjct: 299 LLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGN 352



 Score = 45.4 bits (106), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 19/68 (27%)

Query: 358 PHECRLRDLTYSAPITVDIEYTRGSQRVVR--------------SDLVIGRMPIMLQSSK 403
           P   RLR+LTYSAP+ VD+     S+RV++              + + IG++PIML+SS 
Sbjct: 7   PKAARLRNLTYSAPLYVDV-----SKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSY 61

Query: 404 CVLRNKTE 411
           C L   +E
Sbjct: 62  CTLFQNSE 69


>gi|113957144|gb|ABI49101.1| RNA polymerase II second largest subunit [Pseudocyphellaria anomala]
          Length = 715

 Score =  214 bits (546), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 106/264 (40%), Positives = 165/264 (62%), Gaps = 5/264 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 367  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDQRMDTMANILYYPQKPLATTRSMEFLKF 426

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR+     K+      ++ 
Sbjct: 427  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSVVEQF 486

Query: 1034 LGPLLEADTRKPVY-RHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAISMATPEY- 1090
              P + +DT K  +  +  LD DGIVAPG ++    +++ K+ P       +   T  + 
Sbjct: 487  EKP-MRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKLHV 545

Query: 1091 -KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             ++V    + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHGQKG IG+ 
Sbjct: 546  KRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGIT 605

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
              QEDMPF   G+ PD+I+NPH +
Sbjct: 606  YRQEDMPFTSEGVVPDLIINPHAI 629



 Score =  158 bits (400), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 86/238 (36%), Positives = 131/238 (55%), Gaps = 13/238 (5%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESG-ICPDIIMNPHGL 1173
            ++ Q  +P   D    +HG        G++  G+ V  ED+   ++  I PD       L
Sbjct: 482  VVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDA----EEL 537

Query: 1174 KGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
                ++   ++V    + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHG
Sbjct: 538  GQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHG 597

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGT 1293
            QKG IG+   QEDMPF   G+ PD+I+NPH  PSRMT+  LIE    K   + G   + T
Sbjct: 598  QKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDAT 657

Query: 1294 AFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKI 1351
             F    +  V   L  HGY  +G ++ Y+G TG  L A ++ GP YYQ+L+HMV DKI
Sbjct: 658  PFTEVTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKI 715



 Score =  115 bits (289), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 91/151 (60%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  T+TN L  ++ TGNW   ++    + GV+QVL+R ++ S L  + R N+
Sbjct: 41  EFNLTLGVKSTTLTNGLKYSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNT 100

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT     + ++  M  
Sbjct: 101 PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQ 160

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
             +E +  +  E L SP    VFVNG+  G+
Sbjct: 161 RNMEVLEEY--EPLRSPNATKVFVNGVWVGV 189



 Score = 90.5 bits (223), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 351 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 396

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 397 YDQRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 436


>gi|123979412|gb|ABM81531.1| RNA polymerase II second largest subunit [Platismatia glauca]
          Length = 358

 Score =  214 bits (546), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 110/267 (41%), Positives = 167/267 (62%), Gaps = 11/267 (4%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DT+   L Y Q+P+  ++++    F
Sbjct: 17   IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYQQRMDTMANILYYPQKPLATTRSMEFLKF 76

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR      K+      ++ 
Sbjct: 77   RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQEKRIGMSVVEQF 136

Query: 1034 LGPLLEADTRKPVY-RHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKE 1092
              P + +DT K  +  +  LD DG+VAPG ++    +++ K+ P I+  A  +   +  +
Sbjct: 137  EKP-MRSDTLKLKHGTYDKLDDDGLVAPGVRVSGEDIIIGKTAP-IAPDAEELG--QRTK 192

Query: 1093 VPVSYKGSVP------SYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVI 1146
            + V    S P        +++VL+S+N+E    +K+ +R T+ P+IGDKF+SRHGQKG I
Sbjct: 193  LHVKRDTSTPLRSTENGIVDQVLLSTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTI 252

Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G+   QEDMPF   G+ PD+I+NPH +
Sbjct: 253  GITYRQEDMPFTSEGMVPDLIINPHAI 279



 Score =  144 bits (364), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 80/231 (34%), Positives = 124/231 (53%), Gaps = 13/231 (5%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESG-ICPDIIMNPHGL 1173
            ++ Q  +P   D    +HG        G++  G+ V  ED+   ++  I PD       L
Sbjct: 132  VVEQFEKPMRSDTLKLKHGTYDKLDDDGLVAPGVRVSGEDIIIGKTAPIAPD----AEEL 187

Query: 1174 KGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
                ++   ++     + +    +++VL+S+N+E    +K+ +R T+ P+IGDKF+SRHG
Sbjct: 188  GQRTKLHVKRDTSTPLRSTENGIVDQVLLSTNAEGLRFVKVRMRTTKIPQIGDKFASRHG 247

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGT 1293
            QKG IG+   QEDMPF   G+ PD+I+NPH  PSRMT+  LIE L  K   + G   + T
Sbjct: 248  QKGTIGITYRQEDMPFTSEGMVPDLIINPHAIPSRMTIAHLIECLLSKVSSLRGFEGDAT 307

Query: 1294 AFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLK 1344
             F    +  V   L  HGY  +G ++ Y+G TG  L   ++ GP YYQ+L+
Sbjct: 308  PFTEVTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVTQVFLGPTYYQRLR 358



 Score = 92.4 bits (228), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/100 (44%), Positives = 59/100 (59%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 1   THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 46

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
            Q R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 47  YQQRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 86


>gi|123979364|gb|ABM81507.1| RNA polymerase II second largest subunit [Myelochroa aurulenta]
          Length = 704

 Score =  214 bits (546), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 107/266 (40%), Positives = 163/266 (61%), Gaps = 9/266 (3%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DT+   L Y Q+P+  ++++    F
Sbjct: 363  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYQQRMDTMANILYYPQKPLATTRSMEFLKF 422

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR      K+      ++ 
Sbjct: 423  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQEKRIGMSVVEQF 482

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKEV 1093
              P+     R     +  LD DG+VAPG ++    +++ K+ P I+  A  +   +  ++
Sbjct: 483  EKPMRSDTLRLKHGTYDKLDDDGLVAPGVRVSGEDIIIGKTAP-IAPDAEELG--QRTKL 539

Query: 1094 PVSYKGSVP------SYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
             +    S P        +++VL+S+N+E    +K+ +R T+ P+IGDKF+SRHGQKG IG
Sbjct: 540  HIKRDTSTPLRSTENGIVDQVLLSTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIG 599

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            +   QEDMPF   G+ PD+I+NPH +
Sbjct: 600  ITYRQEDMPFTSEGMVPDLIINPHAI 625



 Score =  145 bits (365), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 81/231 (35%), Positives = 124/231 (53%), Gaps = 13/231 (5%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESG-ICPDIIMNPHGL 1173
            ++ Q  +P   D    +HG        G++  G+ V  ED+   ++  I PD       L
Sbjct: 478  VVEQFEKPMRSDTLRLKHGTYDKLDDDGLVAPGVRVSGEDIIIGKTAPIAPDA----EEL 533

Query: 1174 KGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
                ++   ++     + +    +++VL+S+N+E    +K+ +R T+ P+IGDKF+SRHG
Sbjct: 534  GQRTKLHIKRDTSTPLRSTENGIVDQVLLSTNAEGLRFVKVRMRTTKIPQIGDKFASRHG 593

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGT 1293
            QKG IG+   QEDMPF   G+ PD+I+NPH  PSRMT+  LIE L  K   + G   + T
Sbjct: 594  QKGTIGITYRQEDMPFTSEGMVPDLIINPHAIPSRMTIAHLIECLLSKVSSLRGFEGDAT 653

Query: 1294 AFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLK 1344
             F    +  V   L  HGY  +G ++ Y+G TG  L   I+ GP YYQ+L+
Sbjct: 654  PFTEVTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVTQIFLGPTYYQRLR 704



 Score =  112 bits (281), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 91/151 (60%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++   +TN L  ++ TGNW   ++    + GV+QVL+R ++ S L  + R N+
Sbjct: 39  EFNMTLAVKSTHLTNGLRYSLATGNWGDQKKAASVKAGVSQVLNRYTFASTLSHLRRTNT 98

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT     + ++  M  
Sbjct: 99  PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIVDFMIQ 158

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
             +E +  +  E LSSP    +FVNG+  G+
Sbjct: 159 RNMEVLEEY--EPLSSPNATKIFVNGVWVGV 187



 Score = 92.4 bits (228), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/100 (44%), Positives = 59/100 (59%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 347 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 392

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
            Q R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 393 YQQRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 432


>gi|52699860|gb|AAU86991.1| DNA-dependent RNA polymerase II second largest subunit [Porpidia
            albocaerulescens]
          Length = 715

 Score =  214 bits (546), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 106/264 (40%), Positives = 166/264 (62%), Gaps = 5/264 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 365  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDVRMDTMANILYYPQKPLATTRSMEFLKF 424

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR+     K+      +  
Sbjct: 425  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMNVVEEF 484

Query: 1034 LGPLLEADTRKPVY-RHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAISMATPEY- 1090
              P + +DT K  +  +  LD DGIVAPG ++    +++ K+ P       + + T  + 
Sbjct: 485  EKP-MRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGLRTKLHM 543

Query: 1091 -KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             ++V    + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHGQKG IG+ 
Sbjct: 544  KRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGIT 603

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
              QEDMPF+  G+ PD+I+NPH +
Sbjct: 604  YRQEDMPFSSEGVVPDLIINPHAI 627



 Score =  157 bits (396), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 86/240 (35%), Positives = 135/240 (56%), Gaps = 13/240 (5%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESG-ICPDIIMNPHGL 1173
            ++ +  +P   D    +HG        G++  G+ V  ED+   ++  I PD      GL
Sbjct: 480  VVEEFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPD--AEELGL 537

Query: 1174 KGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
            +   ++   ++V    + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHG
Sbjct: 538  R--TKLHMKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHG 595

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGT 1293
            QKG IG+   QEDMPF+  G+ PD+I+NPH  PSRMT+  LIE    K   + G   + T
Sbjct: 596  QKGTIGITYRQEDMPFSSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDAT 655

Query: 1294 AFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHA 1353
             F    +  V   L  HGY  +G ++ Y+G TG+ L A ++ GP YYQ+L+HMV  KI A
Sbjct: 656  PFTEVTVDSVSRLLREHGYQSRGFEVMYNGHTGKKLVAQVFLGPTYYQRLRHMVDXKIXA 715



 Score =  115 bits (289), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 91/151 (60%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  T+TN L  ++ TGNW   ++    + GV+QVL+R ++ S L  + R N+
Sbjct: 41  EFNLTLGVKSTTLTNGLKYSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNT 100

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT     + ++  M  
Sbjct: 101 PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQ 160

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
             +E +  +  E L SP    VFVNG+  G+
Sbjct: 161 RNMEVLEEY--EPLRSPNATKVFVNGVWVGV 189



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 349 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 394

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 395 YDVRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 434


>gi|320172592|gb|ADW24179.1| RNA polymerase II second largest subunit [Neolentinus adhaerens]
          Length = 327

 Score =  214 bits (546), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 163/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ  MGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 4    IIPFPDHNQSPRNTYQSTMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLRF 63

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 64   RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEF 123

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS-AISMATPEY-- 1090
              P  +   R     +  L+ DG++APG  +    +++ K+ P    S  +   T  +  
Sbjct: 124  EKPTRDTTLRMKHGTYDKLEDDGLIAPGTGVTGDDIIIGKTAPIPPDSEELGQRTRSHTR 183

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V  + K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 184  RDVSTAMKSTENGIVDQVLITTNSEGQKFVKVRVRATRVPQIGDKFASRHGQKGTIGITY 243

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 244  RQEDMPFTAEGITPDIIINPHAI 266



 Score =  134 bits (336), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 64/144 (44%), Positives = 90/144 (62%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V  + K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 184  RDVSTAMKSTENGIVDQVLITTNSEGQKFVKVRVRATRVPQIGDKFASRHGQKGTIGITY 243

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 244  RQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVES 303

Query: 1303 VQEELIRHGYNYQGKDIFYSGITG 1326
            V   L + GY  +G ++ Y G TG
Sbjct: 304  VSAFLRQKGYQSRGLEVMYHGHTG 327



 Score = 74.3 bits (181), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 44/126 (34%), Positives = 69/126 (54%), Gaps = 8/126 (6%)

Query: 757 LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 816
           ++P+P HNQ+PRNTYQ  MGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 4   IIPFPDHNQSPRNTYQSTMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLRF 63

Query: 817 HKLPAGKCQISPGGAEELTARESCHEVLKIISFSISVAVFDSVWLG-----DVKQGVHQL 871
            +LPAG+  I    A    +  +  + + +   SI   +F S++       + K GV QL
Sbjct: 64  RELPAGQNAIV---AILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQL 120

Query: 872 SEEKEP 877
            E ++P
Sbjct: 121 EEFEKP 126


>gi|46277263|gb|AAS86822.1| RNA polymerase II second largest subunit, partial [Liriodendron
            tulipifera]
          Length = 539

 Score =  214 bits (546), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 109/270 (40%), Positives = 167/270 (61%), Gaps = 19/270 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 201  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHF 260

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L +R+ +           ++ 
Sbjct: 261  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR---------DEEKK 311

Query: 1034 LGPLLEADTRKPV------YRHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            +G L++ D  +P        RH +   LD DG+  PG ++    V++ K+ P     +  
Sbjct: 312  MGTLIKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDESQG 371

Query: 1085 MATP-EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1143
             A+    ++   S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQK
Sbjct: 372  QASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQK 431

Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G +G+   QEDMP+   GI PDII+NPH +
Sbjct: 432  GTVGMTYTQEDMPWTVEGITPDIIVNPHAI 461



 Score =  145 bits (365), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 68/157 (43%), Positives = 100/157 (63%)

Query: 1187 VSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQED 1246
             S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   QED
Sbjct: 383  TSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 442

Query: 1247 MPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEE 1306
            MP+   GI PDII+NPH  PSRMT+G+LIE + GK  +  G   + T F    + ++ + 
Sbjct: 443  MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAVHMGKEGDATPFTDVTVDNISKA 502

Query: 1307 LIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKL 1343
            L + GY  +G +  Y+G TG  L A I+ GP YYQ+L
Sbjct: 503  LHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 539



 Score =  100 bits (250), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 56/141 (39%), Positives = 77/141 (54%), Gaps = 24/141 (17%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPG----------VTTHLEIAPFTLLGVCA 741
           + D + +G IEY+D  E   + I+++ S +               TH EI P  +LGVCA
Sbjct: 140 WHDLVAKGFIEYVDTEEEETTMISMTISDLVSARLNPDEAYSETYTHCEIHPSLILGVCA 199

Query: 742 GIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYA 801
            I              +P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y 
Sbjct: 200 SI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYP 245

Query: 802 QRPMVESKTIRITNFHKLPAG 822
           Q+P+V ++ +   +F +LPAG
Sbjct: 246 QKPLVTTRAMEHLHFRQLPAG 266



 Score = 50.8 bits (120), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 40/69 (57%), Gaps = 8/69 (11%)

Query: 269 DTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMFNGEELSS---PGVYLV 325
           +TPEG+ACGLVKNLALM +IT  +    +L+ +     E  +  N EE+S    P    +
Sbjct: 1   ETPEGQACGLVKNLALMVYITVGSAANPILEFL-----EEWSTENFEEISPAVIPQATKI 55

Query: 326 FVNGILAGI 334
           FVNG   GI
Sbjct: 56  FVNGCWVGI 64


>gi|354992125|gb|AER45769.1| RNA polymerase II second largest subunit [Pleurotus ostreatus]
          Length = 687

 Score =  214 bits (546), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 107/263 (40%), Positives = 160/263 (60%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 345  IIPFPDHNQSPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKF 404

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 405  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSVDRGLFRSMYYRSYMDLEKKSGIQQLEEF 464

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 465  EKPSRDNTLRMKHGTYDKLENDGLIAPGTGVVGEDIIIGKTAPIPPDSEELGQRTRTHTR 524

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++N E    IK+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 525  RDVSTPLKSTENGIVDQVLITTNHEGQKFIKIRVRSTRIPQIGDKFASRHGQKGTIGITY 584

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 585  RQEDMPFTREGIVPDIIINPHAI 607



 Score =  158 bits (399), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 76/168 (45%), Positives = 103/168 (61%)

Query: 1178 RITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV 1237
            R    ++V    K +    +++VL+++N E    IK+ +R TR P+IGDKF+SRHGQKG 
Sbjct: 520  RTHTRRDVSTPLKSTENGIVDQVLITTNHEGQKFIKIRVRSTRIPQIGDKFASRHGQKGT 579

Query: 1238 IGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGG 1297
            IG+   QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F  
Sbjct: 580  IGITYRQEDMPFTREGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTD 639

Query: 1298 TKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKH 1345
              +  V   L + GY  +G ++ Y G TG  L+A +Y GP YYQ+LKH
Sbjct: 640  LTVESVSAFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKH 687



 Score =  111 bits (277), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 91/151 (60%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 39  EFNLTLAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT 98

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM+ I+  +    +++ +  
Sbjct: 99  PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSISAPVIEFLEE 158

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E +        SS     VFVNG+  G+
Sbjct: 159 WGLESL---EENAHSSIPCTKVFVNGVWMGV 186



 Score = 88.2 bits (217), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 47/121 (38%), Positives = 65/121 (53%), Gaps = 14/121 (11%)

Query: 706 VNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQ 765
           VN+G     A  ++       TH EI P  +LG+CA I              +P+P HNQ
Sbjct: 308 VNDGEYDPAARLKASTHAHTWTHCEIHPSMILGICASI--------------IPFPDHNQ 353

Query: 766 APRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQ 825
           +PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  
Sbjct: 354 SPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNA 413

Query: 826 I 826
           I
Sbjct: 414 I 414


>gi|341859026|gb|AEK97423.1| ribosomal polymerase II second largest subunit [Beauveria bassiana]
          Length = 703

 Score =  214 bits (546), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 104/264 (39%), Positives = 165/264 (62%), Gaps = 5/264 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 362  IIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSMEFLKF 421

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L +R+     K+      +  
Sbjct: 422  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYSDQEKKVGLNYTEIF 481

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMP----TISVSAISMATPE 1089
              P  ++  R     +  LD+DGIVAPG ++    +++ K+ P    T  + A + A  +
Sbjct: 482  EKPFHQSTLRMKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAPIDPETQDLGARTTAH-Q 540

Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             +++    + +    +++V+V+ N+++   +K+ +R T+ P+IGDKF+SRHGQKG IG+ 
Sbjct: 541  RRDISTPLRSTENGIVDQVIVTVNADNVKYVKVRVRTTKIPQIGDKFASRHGQKGTIGVT 600

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
              QEDMPF   G+ PDII+NPH +
Sbjct: 601  YRQEDMPFTREGVTPDIIINPHAI 624



 Score =  150 bits (379), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 68/162 (41%), Positives = 104/162 (64%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            +++    + +    +++V+V+ N+++   +K+ +R T+ P+IGDKF+SRHGQKG IG+  
Sbjct: 542  RDISTPLRSTENGIVDQVIVTVNADNVKYVKVRVRTTKIPQIGDKFASRHGQKGTIGVTY 601

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   G+ PDII+NPH  PSRMT+  LIE L  K   +EG   + T F    +  
Sbjct: 602  RQEDMPFTREGVTPDIIINPHAIPSRMTIAHLIECLLSKVSTLEGMEGDATPFTDVTVDS 661

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLK 1344
            V + L +HGY  +G +I Y+G TG+ L A ++ GP YYQ+L+
Sbjct: 662  VSDLLRKHGYQSRGFEIMYNGHTGKKLRAQVFFGPTYYQRLR 703



 Score =  111 bits (277), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 91/151 (60%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMER-QGVTQVLSRLSYISGLGMMTRINS 243
            F++   ++  T++N L  ++ TGNW  ++  M    GV+QVL+R ++ S L  + R N+
Sbjct: 40  HFNLAVGVKPGTLSNGLKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNT 99

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNL+LM +++  +  + ++  M N
Sbjct: 100 PIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSPAEPLIDFMIN 159

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E I  +  E L  P    +FVNG   G+
Sbjct: 160 RGMEVIEEY--EPLRYPHATKIFVNGTWVGV 188



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 346 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGFFLTN 391

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 392 YSRRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 431


>gi|119644004|gb|ABL85600.1| RNA polymerase II second largest subunit [Lecidea fuscoatra]
          Length = 707

 Score =  214 bits (546), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 106/264 (40%), Positives = 164/264 (62%), Gaps = 5/264 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 359  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDQRMDTMANILYYPQKPLATTRSMEFLKF 418

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR      K+      +  
Sbjct: 419  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQEKRVGMSVVEEF 478

Query: 1034 LGPLLEADTRKPVY-RHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAISMATPEY- 1090
              P + +DT K  +  +  LD DGIVAPG ++    +++ K+ P       + + T  + 
Sbjct: 479  EKP-MRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGLRTKLHM 537

Query: 1091 -KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             ++V    + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHGQKG IG+ 
Sbjct: 538  KRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGIT 597

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
              QEDMPF   G+ PD+I+NPH +
Sbjct: 598  YRQEDMPFTSEGVVPDLIINPHAI 621



 Score =  158 bits (399), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 86/238 (36%), Positives = 133/238 (55%), Gaps = 13/238 (5%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESG-ICPDIIMNPHGL 1173
            ++ +  +P   D    +HG        G++  G+ V  ED+   ++  I PD      GL
Sbjct: 474  VVEEFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPD--AEELGL 531

Query: 1174 KGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
            +   ++   ++V    + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHG
Sbjct: 532  R--TKLHMKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHG 589

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGT 1293
            QKG IG+   QEDMPF   G+ PD+I+NPH  PSRMT+  LIE    K   + G   + T
Sbjct: 590  QKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDAT 649

Query: 1294 AFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKI 1351
             F    +  V   L  HGY  +G ++ Y+G TG  L A ++ GP YYQ+L+HMV DKI
Sbjct: 650  PFTEVTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKI 707



 Score =  115 bits (289), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 91/151 (60%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  T+TN L  ++ TGNW   ++    + GV+QVL+R ++ S L  + R N+
Sbjct: 35  EFNLTLGVKSTTLTNGLKYSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNT 94

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT     + ++  M  
Sbjct: 95  PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQ 154

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
             +E +  +  E L SP    VFVNG+  G+
Sbjct: 155 RNMEVLEEY--EPLRSPNATKVFVNGVWVGV 183



 Score = 90.5 bits (223), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 343 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 388

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 389 YDQRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 428


>gi|112382379|gb|ABI17421.1| RNA polymerase II second largest subunit, partial [Sarcomyxa
            serotina]
          Length = 659

 Score =  214 bits (546), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 346  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKF 405

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG    + YR+   + K+   Q  +  
Sbjct: 406  RELPAGQNAVVAILCYSGYNQEDSVIMNQSSIDRGLFXSIYYRSYMDLEKKSGIQQLEEF 465

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P+ +   R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 466  EKPVRDNTLRMKHGTYDKLEDDGLIAPGTGVAGEDIIIGKTAPIPPDSEELGQRTRTHTR 525

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 526  RDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITY 585

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 586  RQEDMPFTAEGIVPDIIINPHAI 608



 Score =  125 bits (313), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 61/139 (43%), Positives = 84/139 (60%)

Query: 1178 RITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV 1237
            R    ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG 
Sbjct: 521  RTHTRRDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGT 580

Query: 1238 IGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGG 1297
            IG+   QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F  
Sbjct: 581  IGITYRQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTD 640

Query: 1298 TKLVDVQEELIRHGYNYQG 1316
              +  V   L + GY  +G
Sbjct: 641  LTVESVSTFLRQKGYQSRG 659



 Score =  111 bits (277), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 90/151 (59%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 40  EFNLALAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT 99

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM  I+  +    +++ +  
Sbjct: 100 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEE 159

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E +        SS     VFVNG+  G+
Sbjct: 160 WGLESL---EENAHSSTPCTKVFVNGVWMGV 187



 Score = 87.4 bits (215), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 44/106 (41%), Positives = 61/106 (57%), Gaps = 14/106 (13%)

Query: 718 ESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGK 777
           ++G+     TH EI P  +LGVCA I              +P+P HNQ+PRNTYQ AMGK
Sbjct: 321 KAGVNAHTWTHCEIHPSMVLGVCASI--------------IPFPDHNQSPRNTYQSAMGK 366

Query: 778 QAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
           QAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+
Sbjct: 367 QAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQ 412


>gi|45545353|gb|AAS67524.1| DNA-dependent RNA polymerase II second largest subunit, partial
            [Usnea cornuta]
          Length = 903

 Score =  214 bits (546), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 110/267 (41%), Positives = 167/267 (62%), Gaps = 11/267 (4%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DT+   L Y Q+P+  ++++    F
Sbjct: 561  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYQQRMDTMANILYYPQKPLATTRSMEFLKF 620

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR      K+      ++ 
Sbjct: 621  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQEKRIGMSVVEQF 680

Query: 1034 LGPLLEADTRKPVY-RHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKE 1092
              P + +DT K  +  +  LD DG+VAPG ++    +++ K+ P I+  A  +   +  +
Sbjct: 681  EKP-MRSDTLKLKHGTYDKLDDDGLVAPGVRVSGEDIIIGKTAP-IAPDAEELG--QRTK 736

Query: 1093 VPVSYKGSVP------SYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVI 1146
            + V    S P        +++VL+S+N+E    +K+ +R T+ P+IGDKF+SRHGQKG I
Sbjct: 737  LHVKRDTSTPLRSTENGIVDQVLLSTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTI 796

Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G+   QEDMPF   G+ PD+I+NPH +
Sbjct: 797  GITYRQEDMPFTSEGMVPDLIINPHAI 823



 Score =  148 bits (373), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 81/232 (34%), Positives = 125/232 (53%), Gaps = 13/232 (5%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESG-ICPDIIMNPHGL 1173
            ++ Q  +P   D    +HG        G++  G+ V  ED+   ++  I PD       L
Sbjct: 676  VVEQFEKPMRSDTLKLKHGTYDKLDDDGLVAPGVRVSGEDIIIGKTAPIAPD----AEEL 731

Query: 1174 KGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
                ++   ++     + +    +++VL+S+N+E    +K+ +R T+ P+IGDKF+SRHG
Sbjct: 732  GQRTKLHVKRDTSTPLRSTENGIVDQVLLSTNAEGLRFVKVRMRTTKIPQIGDKFASRHG 791

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGT 1293
            QKG IG+   QEDMPF   G+ PD+I+NPH  PSRMT+  LIE L  K   + G   + T
Sbjct: 792  QKGTIGITYRQEDMPFTSEGMVPDLIINPHAIPSRMTIAHLIECLLSKVSSLRGFEGDAT 851

Query: 1294 AFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKH 1345
             F    +  V   L  HGY  +G ++ Y+G TG  L   ++ GP YYQ+L+H
Sbjct: 852  PFTEVTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVTQVFLGPTYYQRLRH 903



 Score =  111 bits (278), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 91/151 (60%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++   +TN L  ++ TGNW   ++    + GV+QVL+R ++ S L  + R N+
Sbjct: 237 EFNMTLAVKSTHLTNGLRYSLATGNWGDQKKAASVKAGVSQVLNRYTFASTLSHLRRTNT 296

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT     + ++  M  
Sbjct: 297 PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIVDFMIQ 356

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
             +E +  +  E L+SP    +FVNG+  G+
Sbjct: 357 RNMEVLEEY--EPLNSPNATKIFVNGVWVGV 385



 Score = 92.4 bits (228), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 44/100 (44%), Positives = 59/100 (59%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 545 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 590

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
            Q R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 591 YQQRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 630



 Score = 57.0 bits (136), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 14/114 (12%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           ARD +    + HI  +      KA +L  M+ R++        +DDRD++G KRL+LAG 
Sbjct: 148 ARDIMQKELLPHISQVEGSETRKAFFLGYMVHRLLQCALGRREVDDRDHFGKKRLDLAGP 207

Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYGN 555
           LL+ +F   F +   ++           KE N++  V   +L +G  + L  GN
Sbjct: 208 LLASLFRGTFNKLTKDVYKYLQKCVENNKEFNMTLAVKSTHLTNGLRYSLATGN 261


>gi|297799890|ref|XP_002867829.1| hypothetical protein ARALYDRAFT_492703 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297313665|gb|EFH44088.1| hypothetical protein ARALYDRAFT_492703 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1188

 Score =  214 bits (546), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 110/271 (40%), Positives = 169/271 (62%), Gaps = 21/271 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 718  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 777

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L +R+ +           ++ 
Sbjct: 778  RQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR---------DEEKK 828

Query: 1034 LGPLLEADTRKPV------YRHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            +G L++ D  +P        RH +   LD DG+  PG ++    V++ K+ P IS     
Sbjct: 829  MGTLVKEDFGRPDRGSTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP-ISQDEAQ 887

Query: 1085 MATPEY--KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQ 1142
              +  Y  ++  +S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQ
Sbjct: 888  GQSSRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 947

Query: 1143 KGVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            KG +G+   QEDMP+   G+ PDII+NPH +
Sbjct: 948  KGTVGMTYTQEDMPWTIEGVTPDIIVNPHAI 978



 Score =  179 bits (454), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 85/184 (46%), Positives = 120/184 (65%)

Query: 1187 VSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQED 1246
            +S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   QED
Sbjct: 900  ISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 959

Query: 1247 MPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEE 1306
            MP+   G+ PDII+NPH  PSRMT+G+LIE + GK     G   + T F    + ++ + 
Sbjct: 960  MPWTIEGVTPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 1019

Query: 1307 LIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQP 1366
            L + GY  +G +  Y+G TG  L A I+ GP YYQ+LKHMV DKIH+R RGP  +LTRQP
Sbjct: 1020 LHKCGYQMRGFERMYNGHTGRPLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP 1079

Query: 1367 TGRR 1370
               R
Sbjct: 1080 AEGR 1083



 Score =  120 bits (301), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 63/146 (43%), Positives = 89/146 (60%), Gaps = 8/146 (5%)

Query: 192 MRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKV 251
           ++  TIT+ L  ++ TGNW        R GV+QVL+RL+Y S L  + R+NS   +  K+
Sbjct: 440 IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKL 499

Query: 252 SGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAM 311
           + PR L  SQWGM+CP++TPEG+ACGLVKNLALM +IT  +    +L+ +   G E    
Sbjct: 500 AKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTE---- 555

Query: 312 FNGEELSS---PGVYLVFVNGILAGI 334
            N EE+S    P    +FVNG+  G+
Sbjct: 556 -NFEEISPSVIPQATKIFVNGMWVGV 580



 Score =  100 bits (248), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 63/172 (36%), Positives = 89/172 (51%), Gaps = 40/172 (23%)

Query: 677 RPTFLNMHQFLGFKRFDDF----------------LYEGKIEYLDVNEGNDSHIAVS--- 717
           RP F+  +Q L  K+ D +                + +G IEY+D  E   + I+++   
Sbjct: 626 RPLFIVDNQRLLIKKRDIYALQQRESAEEDGWHHLVAKGFIEYIDTEEEETTMISMTISD 685

Query: 718 --ESGIRPGVT-----THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNT 770
             ++ +RP        TH EI P  +LGVCA I              +P+P HNQ+PRNT
Sbjct: 686 LVQARLRPEEAYTENYTHCEIHPSLILGVCASI--------------IPFPDHNQSPRNT 731

Query: 771 YQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAG 822
           YQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F +LPAG
Sbjct: 732 YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG 783



 Score = 57.4 bits (137), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 57/121 (47%), Gaps = 14/121 (11%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           K+  +  A+D L    + H+ +       KA Y   +I R++L        DDRD+YGNK
Sbjct: 337 KEKRIKYAKDILQKEMLPHVGIGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNK 396

Query: 509 RLELAGSLLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYG 554
           RL+LAG LL  +F  +F++   ++           KE NL   +    + SG  + L  G
Sbjct: 397 RLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKEVNLQFAIKAKTITSGLKYSLATG 456

Query: 555 N 555
           N
Sbjct: 457 N 457



 Score = 48.9 bits (115), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 19/85 (22%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVR------------- 387
           + KP + ES   T    P   RLR+LTYSAP+ VD+     ++RV++             
Sbjct: 95  LSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV-----TKRVIKKGHDGEEVTETQD 149

Query: 388 -SDLVIGRMPIMLQSSKCVLRNKTE 411
            + + IG++PIML+SS C L   +E
Sbjct: 150 FTKVFIGKVPIMLRSSYCTLFQNSE 174


>gi|222625458|gb|EEE59590.1| hypothetical protein OsJ_11898 [Oryza sativa Japonica Group]
          Length = 1218

 Score =  214 bits (546), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 111/270 (41%), Positives = 167/270 (61%), Gaps = 19/270 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 746  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHF 805

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L +R+ +           ++ 
Sbjct: 806  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR---------DEEKK 856

Query: 1034 LGPLLEADTRKPV------YRHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            +G L++ +  +P        RH +   LD DG+  PG ++    V++ K+ P     A  
Sbjct: 857  MGTLVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIPQDDAQG 916

Query: 1085 MATPEYK-EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1143
             AT   K +   S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQK
Sbjct: 917  QATRYTKRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQK 976

Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G +G+   QEDMP+   GI PDII+NPH +
Sbjct: 977  GTVGMTYTQEDMPWTIEGITPDIIVNPHAI 1006



 Score =  181 bits (459), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 86/184 (46%), Positives = 119/184 (64%)

Query: 1187 VSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQED 1246
             S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   QED
Sbjct: 928  TSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 987

Query: 1247 MPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEE 1306
            MP+   GI PDII+NPH  PSRMT+G+LIE + GK     G   + T F    + ++ + 
Sbjct: 988  MPWTIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 1047

Query: 1307 LIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQP 1366
            L + GY  +G +  Y+G TG  L A I+ GP YYQ+LKHMV DKIH+R RGP  +LTRQP
Sbjct: 1048 LHKCGYQMRGFETMYNGHTGRKLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP 1107

Query: 1367 TGRR 1370
               R
Sbjct: 1108 AEGR 1111



 Score =  118 bits (296), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 63/146 (43%), Positives = 87/146 (59%), Gaps = 8/146 (5%)

Query: 192 MRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKV 251
           ++  TIT+ L  ++ TGNW        R GV+QVL+RL+Y S L  + R+NS   +  K+
Sbjct: 469 IKAKTITSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKL 528

Query: 252 SGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAM 311
           + PR L  S WGM+CP++TPEG+ACGLVKNLALM +IT  +    +L+ +   G E    
Sbjct: 529 AKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWGTE---- 584

Query: 312 FNGEELSS---PGVYLVFVNGILAGI 334
            N EE+S    P    +FVNG   GI
Sbjct: 585 -NFEEISPAVIPQAAKIFVNGCWVGI 609



 Score = 99.8 bits (247), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/141 (40%), Positives = 78/141 (55%), Gaps = 24/141 (17%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSES---GIRPG-------VTTHLEIAPFTLLGVCA 741
           + D + +G IEY+D  E   + I+++ +   G R           TH EI P  +LGVCA
Sbjct: 685 WHDLVAKGFIEYIDTEEEETTMISMTINDLIGARHNPEEAYSETYTHCEIHPSLILGVCA 744

Query: 742 GIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYA 801
            I              +P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y 
Sbjct: 745 SI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYP 790

Query: 802 QRPMVESKTIRITNFHKLPAG 822
           Q+P+V ++ +   +F +LPAG
Sbjct: 791 QKPLVTTRAMEHLHFRQLPAG 811



 Score = 56.6 bits (135), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 57/121 (47%), Gaps = 14/121 (11%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           K+  +  A++ L    + H+ V       KA Y   +I R+++        DDRD+YGNK
Sbjct: 366 KEKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLMCALGRRAEDDRDHYGNK 425

Query: 509 RLELAGSLLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYG 554
           RL+LAG LL  +F  +F++   ++           KE NL   +    + SG  + L  G
Sbjct: 426 RLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKEVNLQFAIKAKTITSGLKYSLATG 485

Query: 555 N 555
           N
Sbjct: 486 N 486



 Score = 49.3 bits (116), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 9/80 (11%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEY---TRG------SQRVVRSDLV 391
           + KP + E+   T    P   RLR+LTYSAP+ VD+ Y    +G      ++ +    + 
Sbjct: 124 LSKPMMTEADGETATLFPKSARLRNLTYSAPLYVDVSYRVMKKGHDCEEVTETMEYPKVF 183

Query: 392 IGRMPIMLQSSKCVLRNKTE 411
           IG++PIML+SS C L  ++E
Sbjct: 184 IGKVPIMLRSSYCTLFQQSE 203


>gi|89274888|gb|ABD65885.1| RNA polymerase II second largest subunit, partial [Rickenella fibula]
          Length = 657

 Score =  214 bits (546), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 108/263 (41%), Positives = 160/263 (60%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 318  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKF 377

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 378  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSMYYRSYMDLEKKSGIQQLEEF 437

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  E   R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 438  EKPSRETTLRMKHGTYDKLEDDGLIAPGTIVNGEDIIIGKTAPIPPDSEELGQRTRTHTR 497

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VLV++NSE    +K+ +R  R P+IGDKF+SRHGQKG IG+  
Sbjct: 498  RDVSTPLKSTESGIVDQVLVTTNSEGQKFVKVRVRSARIPQIGDKFASRHGQKGTIGITY 557

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 558  RQEDMPFTAEGITPDIIINPHAI 580



 Score =  153 bits (386), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 80/196 (40%), Positives = 111/196 (56%), Gaps = 3/196 (1%)

Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNS 1206
            G IV  ED+   ++   P    +   L    R    ++V    K +    +++VLV++NS
Sbjct: 465  GTIVNGEDIIIGKTAPIPP---DSEELGQRTRTHTRRDVSTPLKSTESGIVDQVLVTTNS 521

Query: 1207 EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYP 1266
            E    +K+ +R  R P+IGDKF+SRHGQKG IG+   QEDMPF   GI PDII+NPH  P
Sbjct: 522  EGQKFVKVRVRSARIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIIINPHAIP 581

Query: 1267 SRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITG 1326
            SRMT+G L+E L  K   + GN  + T F    +  V   L + GY  +G ++ Y G TG
Sbjct: 582  SRMTIGHLVECLLSKVATLIGNEGDATPFTELTVESVSTFLRQKGYQSRGLEVMYHGHTG 641

Query: 1327 EALEAYIYSGPVYYQK 1342
              L+A +Y GP YYQ+
Sbjct: 642  RKLQAQVYLGPTYYQR 657



 Score =  114 bits (284), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 59/152 (38%), Positives = 93/152 (61%), Gaps = 8/152 (5%)

Query: 186 FDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINSQ 244
           F+I   ++ +TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+ 
Sbjct: 10  FNIALAVKHNTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTP 69

Query: 245 FEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNI 304
             +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM  I+  +    +++ +   
Sbjct: 70  LGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMATISVGSLSAPVIEFLEEW 129

Query: 305 GIEHIAMFNGEELSSPGVYL--VFVNGILAGI 334
           G+E +     EE +   + L  VFVNG+  G+
Sbjct: 130 GLESL-----EENAHSAIPLTKVFVNGVWMGV 156



 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 76/165 (46%), Gaps = 43/165 (26%)

Query: 691 RFDDFLYEGKIEYLDVNE---------------------GNDSHIAVSE--------SGI 721
           +++  ++ G IEYLD  E                     G D H    E        +  
Sbjct: 237 KWEQLVHGGVIEYLDAEEEETVMICMMPEDLENSRLMAQGIDPHANDGEFDPAARLKAPT 296

Query: 722 RPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMG 781
              + TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG
Sbjct: 297 TAHIWTHCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMG 342

Query: 782 CIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
               N   R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 343 IYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAI 387


>gi|16486|emb|CAA79528.1| RNA polymerase II second largest subunit [Arabidopsis thaliana]
          Length = 1188

 Score =  214 bits (546), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 110/271 (40%), Positives = 169/271 (62%), Gaps = 21/271 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 718  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 777

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L +R+ +           ++ 
Sbjct: 778  RQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR---------DEEKK 828

Query: 1034 LGPLLEADTRKPV------YRHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            +G L++ D  +P        RH +   LD DG+  PG ++    V++ K+ P IS     
Sbjct: 829  MGTLVKEDFGRPDRGSTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP-ISQDEAQ 887

Query: 1085 MATPEY--KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQ 1142
              +  Y  ++  +S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQ
Sbjct: 888  GQSSRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 947

Query: 1143 KGVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            KG +G+   QEDMP+   G+ PDII+NPH +
Sbjct: 948  KGTVGMTYTQEDMPWTIEGVTPDIIVNPHAI 978



 Score =  179 bits (454), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 85/184 (46%), Positives = 120/184 (65%)

Query: 1187 VSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQED 1246
            +S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   QED
Sbjct: 900  ISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 959

Query: 1247 MPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEE 1306
            MP+   G+ PDII+NPH  PSRMT+G+LIE + GK     G   + T F    + ++ + 
Sbjct: 960  MPWTIEGVTPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 1019

Query: 1307 LIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQP 1366
            L + GY  +G +  Y+G TG  L A I+ GP YYQ+LKHMV DKIH+R RGP  +LTRQP
Sbjct: 1020 LHKCGYQMRGFERMYNGHTGRPLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP 1079

Query: 1367 TGRR 1370
               R
Sbjct: 1080 AEGR 1083



 Score =  120 bits (301), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 63/146 (43%), Positives = 89/146 (60%), Gaps = 8/146 (5%)

Query: 192 MRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKV 251
           ++  TIT+ L  ++ TGNW        R GV+QVL+RL+Y S L  + R+NS   +  K+
Sbjct: 440 IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKL 499

Query: 252 SGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAM 311
           + PR L  SQWGM+CP++TPEG+ACGLVKNLALM +IT  +    +L+ +   G E    
Sbjct: 500 AKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTE---- 555

Query: 312 FNGEELSS---PGVYLVFVNGILAGI 334
            N EE+S    P    +FVNG+  G+
Sbjct: 556 -NFEEISPSVIPQATKIFVNGMWVGV 580



 Score =  100 bits (248), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 56/138 (40%), Positives = 78/138 (56%), Gaps = 24/138 (17%)

Query: 695 FLYEGKIEYLDVNEGNDSHIAVS-----ESGIRPGVT-----THLEIAPFTLLGVCAGIE 744
            + +G IEY+D  E   + I+++     ++ +RP        TH EI P  +LGVCA I 
Sbjct: 660 LVAKGFIEYIDTEEEETTMISMTISDLVQARLRPEEAYTENYTHCEIHPSLILGVCASI- 718

Query: 745 LLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRP 804
                        +P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P
Sbjct: 719 -------------IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKP 765

Query: 805 MVESKTIRITNFHKLPAG 822
           +V ++ +   +F +LPAG
Sbjct: 766 LVTTRAMEHLHFRQLPAG 783



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 57/121 (47%), Gaps = 14/121 (11%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           K+  +  ARD L    + ++ +       KA Y   +I R++L        DDRD+YGNK
Sbjct: 337 KEKRIKYARDILQKEMLLYVGIGEHCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNK 396

Query: 509 RLELAGSLLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYG 554
           RL+LAG LL  +F  +F++   ++           KE NL   +    + SG  + L  G
Sbjct: 397 RLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKEVNLQFAIKAKTITSGLKYSLATG 456

Query: 555 N 555
           N
Sbjct: 457 N 457



 Score = 48.9 bits (115), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 19/85 (22%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVR------------- 387
           + KP + ES   T    P   RLR+LTYSAP+ VD+     ++RV++             
Sbjct: 95  LSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV-----TKRVIKKGHDGEEVTETQD 149

Query: 388 -SDLVIGRMPIMLQSSKCVLRNKTE 411
            + + IG++PIML+SS C L   +E
Sbjct: 150 FTKVFIGKVPIMLRSSYCTLFQNSE 174


>gi|67810558|gb|AAY81998.1| RNA polymerase II second largest subunit [Spirogyra sp. UWCC FW670]
          Length = 670

 Score =  214 bits (546), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 106/261 (40%), Positives = 164/261 (62%), Gaps = 1/261 (0%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 201  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYILYYPQKPLVTTRAMEHLHF 260

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R + YR+ +   K+    T +  
Sbjct: 261  RELPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFHRSIFYRSYRDEEKKQGTLTKEEF 320

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYK-E 1092
              P  +  +      +  LD DGI  PG ++    V++ K+MP     + + A    K +
Sbjct: 321  EKPNRDITSGMRHGSYDKLDSDGIAPPGTRVAGEDVIIGKTMPLPQDDSGTQAQRFTKRD 380

Query: 1093 VPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQ 1152
               + + S    +++V+++ N++    +K+ +R  R P+IGDKF+SRHGQKG IG+   Q
Sbjct: 381  QSTTLRHSESGMIDQVILTINNDGFRFVKIRVRSIRIPQIGDKFASRHGQKGTIGMTYTQ 440

Query: 1153 EDMPFNESGICPDIIMNPHGL 1173
            EDMPF++ GI PD+++NPH +
Sbjct: 441  EDMPFSQEGISPDLVVNPHAI 461



 Score =  182 bits (462), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 84/190 (44%), Positives = 123/190 (64%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++   + + S    +++V+++ N++    +K+ +R  R P+IGDKF+SRHGQKG IG+  
Sbjct: 379  RDQSTTLRHSESGMIDQVILTINNDGFRFVKIRVRSIRIPQIGDKFASRHGQKGTIGMTY 438

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF++ GI PD+++NPH  PSRMT+G LIE L GK   + G   + T F    +  
Sbjct: 439  TQEDMPFSQEGISPDLVVNPHAIPSRMTIGHLIECLMGKVAALMGKEGDATPFTDVTVDS 498

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
            +   L   GY  +G ++ Y+G TG  L+A+I+ GP YYQ+LKHMV DKIH+R RGP  +L
Sbjct: 499  ISRALHSCGYQMRGFEVMYNGHTGRKLQAHIFLGPTYYQRLKHMVDDKIHSRGRGPVQIL 558

Query: 1363 TRQPTGRRWK 1372
            TRQP   R +
Sbjct: 559  TRQPAEGRSR 568



 Score = 99.0 bits (245), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/171 (36%), Positives = 85/171 (49%), Gaps = 39/171 (22%)

Query: 677 RPTFLNMHQFLGFKRFD---------------DFLYEGKIEYLDVNEGNDSHIAVSESGI 721
           RP F+  +Q L  K+ D                 + +G IEY+D  E   + IA++ + +
Sbjct: 110 RPLFIVKNQRLLIKKEDIDALQQKEITGVGWHQLIAKGIIEYVDTMEEETTMIAMTINDV 169

Query: 722 RPG----------VTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTY 771
                          TH EI P  +LGVCA I              +P+P HNQ+PRNTY
Sbjct: 170 VSARANPETAYSDTYTHCEIHPSLILGVCASI--------------IPFPDHNQSPRNTY 215

Query: 772 QCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAG 822
           Q AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F +LPAG
Sbjct: 216 QSAMGKQAMGIYVTNYQLRMDTLAYILYYPQKPLVTTRAMEHLHFRELPAG 266



 Score = 49.3 bits (116), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 38/68 (55%), Gaps = 8/68 (11%)

Query: 270 TPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMFNGEELSS---PGVYLVF 326
           TPEG+A GLVKNLALMT+IT  +    +L  +     E   M N EE+S    P    +F
Sbjct: 2   TPEGQAVGLVKNLALMTYITVGSSANPILDFL-----EEWTMENLEEISPALIPTATKIF 56

Query: 327 VNGILAGI 334
           VNG   G+
Sbjct: 57  VNGCWVGV 64


>gi|46277259|gb|AAS86820.1| RNA polymerase II second largest subunit, partial [Trochodendron
            aralioides]
          Length = 547

 Score =  214 bits (546), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 109/270 (40%), Positives = 167/270 (61%), Gaps = 19/270 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 200  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHF 259

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L +R+ +           ++ 
Sbjct: 260  RQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR---------DEEKK 310

Query: 1034 LGPLLEADTRKPV------YRHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            +G L++ D  +P        RH +   LD DG+  PG ++    V++ K+ P     +  
Sbjct: 311  MGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDESQG 370

Query: 1085 MATP-EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1143
             A+    ++   S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQK
Sbjct: 371  QASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQK 430

Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G +G+   QEDMP+   GI PDII+NPH +
Sbjct: 431  GTVGMTYTQEDMPWTAEGITPDIIVNPHAI 460



 Score =  162 bits (409), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 76/166 (45%), Positives = 107/166 (64%)

Query: 1187 VSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQED 1246
             S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   QED
Sbjct: 382  TSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 441

Query: 1247 MPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEE 1306
            MP+   GI PDII+NPH  PSRMT+G+LIE + GK     G   + T F    + ++ + 
Sbjct: 442  MPWTAEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 501

Query: 1307 LIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIH 1352
            L + GY  +G +  Y+G TG  L A I+ GP YYQ+LKHMV DKIH
Sbjct: 502  LHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIH 547



 Score =  100 bits (248), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 63/171 (36%), Positives = 86/171 (50%), Gaps = 39/171 (22%)

Query: 677 RPTFLNMHQFLGFKRFD---------------DFLYEGKIEYLDVNEGNDSHIAVS---- 717
           RP F+   Q L  K+ D               D + +G IEY+D  E   + I+++    
Sbjct: 109 RPLFIVEKQRLLIKKKDIQALQQRESPEGGWHDLVAKGYIEYVDTEEEETTMISMTINDL 168

Query: 718 -ESGIRPG-----VTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTY 771
             + + P        TH EI P  +LGVCA I              +P+P HNQ+PRNTY
Sbjct: 169 ITAKVNPEEAYSETYTHCEIHPSLILGVCASI--------------IPFPDHNQSPRNTY 214

Query: 772 QCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAG 822
           Q AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F +LPAG
Sbjct: 215 QSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG 265



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 39/68 (57%), Gaps = 8/68 (11%)

Query: 270 TPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMFNGEELSS---PGVYLVF 326
           TPEG+ACGLVKNLALM +IT  +    +L+ +     E  +  N EE+S    P    +F
Sbjct: 1   TPEGQACGLVKNLALMVYITVGSAANPILEFL-----EEWSTENFEEISPAVIPNATKIF 55

Query: 327 VNGILAGI 334
           VNG   GI
Sbjct: 56  VNGCWVGI 63


>gi|357216649|gb|AET71058.1| RNA polymerase II second largest subunit, partial [Coriolopsis
            trogii]
          Length = 646

 Score =  214 bits (546), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 105/263 (39%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 333  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLRF 392

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 393  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEF 452

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 453  EKPTRDTTLRMKHGTYDKLEDDGLIAPGTNVNGEDIIIGKTAPIPPDSEELGQRTRTHTK 512

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++N+E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 513  RDVSTPLKSTEQGIVDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 572

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDI++NPH +
Sbjct: 573  RQEDMPFTAEGITPDIVINPHAI 595



 Score =  124 bits (312), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 58/134 (43%), Positives = 84/134 (62%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++N+E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 513  RDVSTPLKSTEQGIVDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 572

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDI++NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 573  RQEDMPFTAEGITPDIVINPHAIPSRMTIGHLVECLLSKLATLIGNEGDATPFTDLTVES 632

Query: 1303 VQEELIRHGYNYQG 1316
            V + L + GY  +G
Sbjct: 633  VSKFLRQKGYQSRG 646



 Score =  110 bits (276), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 93/151 (61%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++ +TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 27  EFNLSLAVKHNTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT 86

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNL+LM+ I+       +++ +  
Sbjct: 87  PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSCISVGTLSAPVIEFLEE 146

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E  ++      S+P    VFVNG+  G+
Sbjct: 147 WGLE--SLEENAHASTPCTK-VFVNGVWMGV 174



 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/220 (31%), Positives = 99/220 (45%), Gaps = 51/220 (23%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVS----------ESGIRPGVT--------------- 726
           +D+ + EG IE LD  E     I ++           SGI P                  
Sbjct: 253 WDNLIKEGVIELLDAEEEETVMICMTPEDLENSRLQASGIDPHADDEIDDPSARLKAPTS 312

Query: 727 ----THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGC 782
               TH EI P  +LGVCA I              +P+P HNQ+PRNTYQ AMGKQAMG 
Sbjct: 313 AHTWTHCEIHPSMILGVCASI--------------IPFPDHNQSPRNTYQSAMGKQAMGI 358

Query: 783 IGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQISPGGAEELTARESCHE 842
              N   R+DT+   L Y Q+P+  ++++    F +LPAG+  I    A    +  +  +
Sbjct: 359 YLTNFLVRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNAIV---AILCYSGYNQED 415

Query: 843 VLKIISFSISVAVFDSVWLG-----DVKQGVHQLSEEKEP 877
            + +   SI   +F S++       + K GV QL E ++P
Sbjct: 416 SVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKP 455


>gi|55140709|gb|AAQ01541.2| RNA polymerase II second largest subunit [Crepidotus cf. applanatus
            PBM 717]
          Length = 688

 Score =  214 bits (546), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 105/263 (39%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMG+QAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 346  IIPFPDHNQSPRNTYQSAMGEQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKF 405

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 406  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEF 465

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  E   R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 466  EKPTRETTLRMKHGTYDKLEDDGLIAPGTGVRGEDIIIGKTAPIPPDSEELGQRTRTHTR 525

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 526  RDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITY 585

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PD+++NPH +
Sbjct: 586  RQEDMPFTAEGIVPDLVINPHAI 608



 Score =  158 bits (400), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 74/163 (45%), Positives = 104/163 (63%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 526  RDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITY 585

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PD+++NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 586  RQEDMPFTAEGIVPDLVINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVES 645

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKH 1345
            V   L + GY  +G +I Y G TG+ L+A +Y GP YYQ+LKH
Sbjct: 646  VSTFLRQKGYQSRGLEIMYHGHTGKKLQAQVYLGPTYYQRLKH 688



 Score = 90.5 bits (223), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 52/150 (34%), Positives = 83/150 (55%), Gaps = 4/150 (2%)

Query: 186 FDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINSQ 244
           F++   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+ 
Sbjct: 40  FNVAFAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTP 99

Query: 245 FEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNI 304
             +  K++ PR L          ++TPEG+ACGLVKNLALM+ I+  +    +++ +   
Sbjct: 100 IGREGKIAKPRQLHNXXXXXXXXAETPEGQACGLVKNLALMSCISVGSFSGPVIEFLEEW 159

Query: 305 GIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
           G+E +        SS     VFVNG+  G+
Sbjct: 160 GLESL---EENAHSSTPFTKVFVNGVWIGV 186



 Score = 87.4 bits (215), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 88/176 (50%), Gaps = 22/176 (12%)

Query: 707 NEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQA 766
           N+G     A  ++G      TH EI P  +LG+CA I              +P+P HNQ+
Sbjct: 310 NDGEYDPAARLKAGTHAHTWTHCEIHPSMILGICASI--------------IPFPDHNQS 355

Query: 767 PRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
           PRNTYQ AMG+QAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 356 PRNTYQSAMGEQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAI 415

Query: 827 SPGGAEELTARESCHEVLKIISFSISVAVFDSVWLG-----DVKQGVHQLSEEKEP 877
               A    +  +  + + +   SI   +F S++       + K G+ QL E ++P
Sbjct: 416 V---AILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEFEKP 468


>gi|52699908|gb|AAU87015.1| DNA-dependent RNA polymerase II second largest subunit [Xanthomendoza
            fallax]
          Length = 717

 Score =  214 bits (546), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 113/287 (39%), Positives = 167/287 (58%), Gaps = 5/287 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMG QAMG        R+DT+   L Y Q+P+  ++++    F
Sbjct: 367  IIPFPDHNQSPRNTYQSAMGXQAMGVFLTXYDERMDTMANILYYPQKPLATTRSMEFLKF 426

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR      K+      ++ 
Sbjct: 427  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYVDTEKRVGMTVLEKF 486

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMA--TPEY- 1090
              PL     +     +  LD DG+VAPG ++    V++ K+ P I+  A  M   T  + 
Sbjct: 487  EKPLRTETLKLKHGTYDKLDDDGLVAPGVRVSGEDVIIGKTTP-IAPDAQEMGQRTKNHV 545

Query: 1091 -KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             K+     + +    ++KVL+S+NSE    +K+ +R T+ P+IGDKF+SRHGQKG IG+ 
Sbjct: 546  KKDASTPLRSTENGIVDKVLLSTNSEGLKFVKVRMRTTKVPQIGDKFASRHGQKGTIGIT 605

Query: 1150 VEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSY 1196
              QEDMPF   G+ PD+I+NPH +     I    E  +S   S+  Y
Sbjct: 606  YRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGY 652



 Score =  156 bits (395), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 75/171 (43%), Positives = 105/171 (61%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            K+     + +    ++KVL+S+NSE    +K+ +R T+ P+IGDKF+SRHGQKG IG+  
Sbjct: 547  KDASTPLRSTENGIVDKVLLSTNSEGLKFVKVRMRTTKVPQIGDKFASRHGQKGTIGITY 606

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   G+ PD+I+NPH  PSRMT+  LIE    K   + G   + T F    +  
Sbjct: 607  RQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGYEGDATPFTEITVDS 666

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHA 1353
            V + L  HGY  +G ++ Y+G TG  L A ++ GP YYQ+L+HMV  KI A
Sbjct: 667  VSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVXXKIXA 717



 Score =  112 bits (281), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 53/151 (35%), Positives = 93/151 (61%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++Q+T+++ L  ++ TGNW   ++    + GV+QVL+R ++ S L  + R N+
Sbjct: 43  EFNLTLGVKQNTLSSGLKYSLATGNWGDQKKAASAKAGVSQVLNRYTFASTLSHLRRTNT 102

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM +I+       ++  + N
Sbjct: 103 PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYISVGTPADPIIDYLSN 162

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E++  +  E   SP    +FVNG   G+
Sbjct: 163 RGMENLEEY--EPARSPHATKIFVNGTWIGV 191



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/100 (41%), Positives = 56/100 (56%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMG QAMG     
Sbjct: 351 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGXQAMGVFLTX 396

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 397 YDERMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 436


>gi|103001731|gb|ABF71519.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
            flavum]
          Length = 700

 Score =  214 bits (546), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 107/265 (40%), Positives = 167/265 (63%), Gaps = 7/265 (2%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQ+MG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 356  IIPFPDHNQSPRNTYQSAMGKQSMGVFLTNYDQRMDTMANILYYPQKPLATTRSMEFLKF 415

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR+     K+      ++ 
Sbjct: 416  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSVVEQF 475

Query: 1034 LGPLLEADTRKPVY-RHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPE--- 1089
              P + +DT K  +  +  LD DGIVAPG ++    +++ K+ P IS  A  +       
Sbjct: 476  EKP-MRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAP-ISPDAEELGQRTKLH 533

Query: 1090 -YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
              ++V    + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHGQKG IG+
Sbjct: 534  VKRDVSTPLRSTENGIVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGI 593

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
               QEDMPF + G+ PD+I+NPH +
Sbjct: 594  TYRQEDMPFTKEGVVPDLIINPHAI 618



 Score =  153 bits (387), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 83/234 (35%), Positives = 130/234 (55%), Gaps = 13/234 (5%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESG-ICPDIIMNPHGL 1173
            ++ Q  +P   D    +HG        G++  G+ V  ED+   ++  I PD       L
Sbjct: 471  VVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPISPD----AEEL 526

Query: 1174 KGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
                ++   ++V    + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHG
Sbjct: 527  GQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHG 586

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGT 1293
            QKG IG+   QEDMPF + G+ PD+I+NPH  PSRMT+  LIE    K   + G   + T
Sbjct: 587  QKGTIGITYRQEDMPFTKEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDAT 646

Query: 1294 AFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMV 1347
             F    +  V + L  HGY  +G ++ Y+G TG  L A ++ GP YYQ+L+HMV
Sbjct: 647  PFTEVTVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMV 700



 Score =  114 bits (286), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 91/151 (60%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW   ++    + GV+QVL+R ++ S L  + R N+
Sbjct: 33  EFNLTLGVKSTTITNGLKYSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNT 92

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT     + +++ M  
Sbjct: 93  PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIEFMIQ 152

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
             +E +  +  E   SP    VFVNG+  G+
Sbjct: 153 RNMEVLEEY--EPQRSPNATKVFVNGVWVGV 181



 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/100 (42%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQ+MG    N
Sbjct: 340 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQSMGVFLTN 385

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 386 YDQRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 425


>gi|15234572|ref|NP_193902.1| DNA-directed RNA polymerase II subunit RPB2 [Arabidopsis thaliana]
 gi|21542437|sp|P38420.2|RPB2_ARATH RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA
            polymerase II subunit 2; Short=RNA polymerase II subunit
            B2; AltName: Full=DNA-directed RNA polymerase II 135 kDa
            polypeptide; AltName: Full=Protein EMBRYO DEFECTIVE 1989
 gi|4455279|emb|CAB36815.1| DNA-directed RNA polymerase (EC 2.7.7.6) II second largest chain
            [Arabidopsis thaliana]
 gi|7268968|emb|CAB81278.1| DNA-directed RNA polymerase (EC 2.7.7.6) II second largest chain
            [Arabidopsis thaliana]
 gi|332659093|gb|AEE84493.1| DNA-directed RNA polymerase II subunit RPB2 [Arabidopsis thaliana]
          Length = 1188

 Score =  214 bits (546), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 110/271 (40%), Positives = 169/271 (62%), Gaps = 21/271 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 718  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 777

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L +R+ +           ++ 
Sbjct: 778  RQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR---------DEEKK 828

Query: 1034 LGPLLEADTRKPV------YRHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            +G L++ D  +P        RH +   LD DG+  PG ++    V++ K+ P IS     
Sbjct: 829  MGTLVKEDFGRPDRGSTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP-ISQDEAQ 887

Query: 1085 MATPEY--KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQ 1142
              +  Y  ++  +S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQ
Sbjct: 888  GQSSRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 947

Query: 1143 KGVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            KG +G+   QEDMP+   G+ PDII+NPH +
Sbjct: 948  KGTVGMTYTQEDMPWTIEGVTPDIIVNPHAI 978



 Score =  179 bits (454), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 85/184 (46%), Positives = 120/184 (65%)

Query: 1187 VSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQED 1246
            +S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   QED
Sbjct: 900  ISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 959

Query: 1247 MPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEE 1306
            MP+   G+ PDII+NPH  PSRMT+G+LIE + GK     G   + T F    + ++ + 
Sbjct: 960  MPWTIEGVTPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 1019

Query: 1307 LIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQP 1366
            L + GY  +G +  Y+G TG  L A I+ GP YYQ+LKHMV DKIH+R RGP  +LTRQP
Sbjct: 1020 LHKCGYQMRGFERMYNGHTGRPLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP 1079

Query: 1367 TGRR 1370
               R
Sbjct: 1080 AEGR 1083



 Score =  120 bits (301), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 63/146 (43%), Positives = 89/146 (60%), Gaps = 8/146 (5%)

Query: 192 MRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKV 251
           ++  TIT+ L  ++ TGNW        R GV+QVL+RL+Y S L  + R+NS   +  K+
Sbjct: 440 IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKL 499

Query: 252 SGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAM 311
           + PR L  SQWGM+CP++TPEG+ACGLVKNLALM +IT  +    +L+ +   G E    
Sbjct: 500 AKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTE---- 555

Query: 312 FNGEELSS---PGVYLVFVNGILAGI 334
            N EE+S    P    +FVNG+  G+
Sbjct: 556 -NFEEISPSVIPQATKIFVNGMWVGV 580



 Score =  100 bits (248), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 56/138 (40%), Positives = 78/138 (56%), Gaps = 24/138 (17%)

Query: 695 FLYEGKIEYLDVNEGNDSHIAVS-----ESGIRPGVT-----THLEIAPFTLLGVCAGIE 744
            + +G IEY+D  E   + I+++     ++ +RP        TH EI P  +LGVCA I 
Sbjct: 660 LVAKGFIEYIDTEEEETTMISMTISDLVQARLRPEEAYTENYTHCEIHPSLILGVCASI- 718

Query: 745 LLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRP 804
                        +P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P
Sbjct: 719 -------------IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKP 765

Query: 805 MVESKTIRITNFHKLPAG 822
           +V ++ +   +F +LPAG
Sbjct: 766 LVTTRAMEHLHFRQLPAG 783



 Score = 58.5 bits (140), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 57/121 (47%), Gaps = 14/121 (11%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           K+  +  ARD L    + H+ +       KA Y   +I R++L        DDRD+YGNK
Sbjct: 337 KEKRIKYARDILQKEMLPHVGIGEHCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNK 396

Query: 509 RLELAGSLLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYG 554
           RL+LAG LL  +F  +F++   ++           KE NL   +    + SG  + L  G
Sbjct: 397 RLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKEVNLQFAIKAKTITSGLKYSLATG 456

Query: 555 N 555
           N
Sbjct: 457 N 457



 Score = 48.9 bits (115), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 19/85 (22%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVR------------- 387
           + KP + ES   T    P   RLR+LTYSAP+ VD+     ++RV++             
Sbjct: 95  LSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV-----TKRVIKKGHDGEEVTETQD 149

Query: 388 -SDLVIGRMPIMLQSSKCVLRNKTE 411
            + + IG++PIML+SS C L   +E
Sbjct: 150 FTKVFIGKVPIMLRSSYCTLFQNSE 174


>gi|357216619|gb|AET71043.1| RNA polymerase II second largest subunit, partial [Trametes ochracea]
          Length = 631

 Score =  214 bits (546), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 105/263 (39%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 320  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKF 379

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 380  RELPAGQNAVVAILCYSGYNQEDSVIMNQSSIDRGLFRSMYYRSYMDLEKKSGIQQLEEF 439

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  ++  R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 440  EKPTRDSTLRMKHGTYDKLEDDGLIAPGTNVNGEDIIIGKTAPIPPDSEELGQRTRTHTK 499

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++N+E    +K+ +R TR P+ GDKF+SRHGQKG IG+  
Sbjct: 500  RDVSTPLKSTEQGIIDQVLITTNAEGQKFVKIRVRSTRIPQTGDKFASRHGQKGTIGITY 559

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 560  RQEDMPFTAEGITPDIIINPHAI 582



 Score =  122 bits (306), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 57/130 (43%), Positives = 81/130 (62%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++N+E    +K+ +R TR P+ GDKF+SRHGQKG IG+  
Sbjct: 500  RDVSTPLKSTEQGIIDQVLITTNAEGQKFVKIRVRSTRIPQTGDKFASRHGQKGTIGITY 559

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 560  RQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVES 619

Query: 1303 VQEELIRHGY 1312
            V + L + GY
Sbjct: 620  VSQFLRQKGY 629



 Score =  109 bits (272), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 93/151 (61%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F +   ++ +TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 7   EFQLGLAVKHNTITNGLKYSLATGNWGDQKKTMSSKAGVSQVLNRYTYASTLSHLRRCNT 66

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNL+LM+ I+  +    +++ +  
Sbjct: 67  PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSCISVGSLSAPVIEFLEE 126

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E  ++      S+P    VFVNG+  G+
Sbjct: 127 WGLE--SLEENAHSSTPCTK-VFVNGVWMGV 154



 Score = 88.2 bits (217), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 76/162 (46%), Gaps = 43/162 (26%)

Query: 691 RFDDFLYEGKIEYLDVNEGNDSHIAVS----------ESGIRPGVT-------------- 726
           ++D+ + +G IE LD  E     I ++           +GI P                 
Sbjct: 239 KWDNLIKDGVIELLDAEEEETVMICMTPEDLENSRLQSAGIDPHANDGELDPSARLKAPT 298

Query: 727 -----THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMG 781
                TH EI P  +LGVCA I              +P+P HNQ+PRNTYQ AMGKQAMG
Sbjct: 299 NAHTWTHCEIHPSMILGVCASI--------------IPFPDHNQSPRNTYQSAMGKQAMG 344

Query: 782 CIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
               N   R+DT+   L Y Q+P+  ++++    F +LPAG+
Sbjct: 345 IYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQ 386


>gi|194320289|gb|ACF48385.1| RNA polymerase II second largest subunit [Dactylina arctica]
          Length = 689

 Score =  214 bits (546), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 107/264 (40%), Positives = 164/264 (62%), Gaps = 5/264 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DT+   L Y Q+P+  ++++    F
Sbjct: 356  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYQQRMDTMANILYYPQKPLATTRSMEFLKF 415

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR      K+      ++ 
Sbjct: 416  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQEKRIGMSVVEQF 475

Query: 1034 LGPLLEADTRKPVY-RHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAISMATPEY- 1090
              P + +DT K  +  +  LD DG+VAPG ++    +++ K+ P       +   T  + 
Sbjct: 476  EKP-MRSDTLKLKHGTYDKLDDDGLVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKLHV 534

Query: 1091 -KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             ++V    + +    +++VL+S+N E    +K+ +R T+ P+IGDKF+SRHGQKG IG+ 
Sbjct: 535  KRDVSTPLRSTENGIVDQVLLSTNGEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGIT 594

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
              QEDMPF   G+ PD+I+NPH +
Sbjct: 595  YRQEDMPFTSEGLVPDLIINPHAI 618



 Score =  132 bits (332), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/223 (34%), Positives = 117/223 (52%), Gaps = 13/223 (5%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESG-ICPDIIMNPHGL 1173
            ++ Q  +P   D    +HG        G++  G+ V  ED+   ++  I PD       L
Sbjct: 471  VVEQFEKPMRSDTLKLKHGTYDKLDDDGLVAPGVRVSGEDIIIGKTAPIAPDA----EEL 526

Query: 1174 KGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
                ++   ++V    + +    +++VL+S+N E    +K+ +R T+ P+IGDKF+SRHG
Sbjct: 527  GQRTKLHVKRDVSTPLRSTENGIVDQVLLSTNGEGLRFVKVRMRTTKIPQIGDKFASRHG 586

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGT 1293
            QKG IG+   QEDMPF   G+ PD+I+NPH  PSRMT+  LIE L  K   + G   + T
Sbjct: 587  QKGTIGITYRQEDMPFTSEGLVPDLIINPHAIPSRMTIAHLIECLLSKVSSLRGFEGDAT 646

Query: 1294 AFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSG 1336
             F    +  V   L  HGY  +G ++ Y+G TG  L   ++ G
Sbjct: 647  PFTEVTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVTQVFLG 689



 Score =  111 bits (278), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 91/151 (60%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++   +TN L  ++ TGNW   ++    + GV+QVL+R ++ S L  + R N+
Sbjct: 32  EFNMTLAVKSTHLTNGLRYSLATGNWGDQKKAASVKAGVSQVLNRYTFASTLSHLRRTNT 91

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT     + ++  M  
Sbjct: 92  PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIVDFMIQ 151

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
             +E +  +  E L+SP    +FVNG+  G+
Sbjct: 152 RNMEVLEEY--EPLNSPNATKIFVNGVWVGV 180



 Score = 92.4 bits (228), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/100 (44%), Positives = 59/100 (59%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 340 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 385

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
            Q R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 386 YQQRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 425


>gi|108710089|gb|ABF97884.1| DNA-directed RNA polymerase II 135 kDa polypeptide, putative,
            expressed [Oryza sativa Japonica Group]
 gi|125545063|gb|EAY91202.1| hypothetical protein OsI_12811 [Oryza sativa Indica Group]
          Length = 1222

 Score =  214 bits (546), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 111/270 (41%), Positives = 167/270 (61%), Gaps = 19/270 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 750  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHF 809

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L +R+ +           ++ 
Sbjct: 810  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR---------DEEKK 860

Query: 1034 LGPLLEADTRKPV------YRHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            +G L++ +  +P        RH +   LD DG+  PG ++    V++ K+ P     A  
Sbjct: 861  MGTLVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIPQDDAQG 920

Query: 1085 MATPEYK-EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1143
             AT   K +   S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQK
Sbjct: 921  QATRYTKRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQK 980

Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G +G+   QEDMP+   GI PDII+NPH +
Sbjct: 981  GTVGMTYTQEDMPWTIEGITPDIIVNPHAI 1010



 Score =  181 bits (458), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 86/184 (46%), Positives = 119/184 (64%)

Query: 1187 VSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQED 1246
             S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   QED
Sbjct: 932  TSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 991

Query: 1247 MPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEE 1306
            MP+   GI PDII+NPH  PSRMT+G+LIE + GK     G   + T F    + ++ + 
Sbjct: 992  MPWTIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 1051

Query: 1307 LIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQP 1366
            L + GY  +G +  Y+G TG  L A I+ GP YYQ+LKHMV DKIH+R RGP  +LTRQP
Sbjct: 1052 LHKCGYQMRGFETMYNGHTGRKLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP 1111

Query: 1367 TGRR 1370
               R
Sbjct: 1112 AEGR 1115



 Score =  118 bits (296), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 63/146 (43%), Positives = 87/146 (59%), Gaps = 8/146 (5%)

Query: 192 MRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKV 251
           ++  TIT+ L  ++ TGNW        R GV+QVL+RL+Y S L  + R+NS   +  K+
Sbjct: 473 IKAKTITSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKL 532

Query: 252 SGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAM 311
           + PR L  S WGM+CP++TPEG+ACGLVKNLALM +IT  +    +L+ +   G E    
Sbjct: 533 AKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWGTE---- 588

Query: 312 FNGEELSS---PGVYLVFVNGILAGI 334
            N EE+S    P    +FVNG   GI
Sbjct: 589 -NFEEISPAVIPQAAKIFVNGCWVGI 613



 Score = 99.4 bits (246), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/141 (40%), Positives = 78/141 (55%), Gaps = 24/141 (17%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSES---GIRPG-------VTTHLEIAPFTLLGVCA 741
           + D + +G IEY+D  E   + I+++ +   G R           TH EI P  +LGVCA
Sbjct: 689 WHDLVAKGFIEYIDTEEEETTMISMTINDLIGARHNPEEAYSETYTHCEIHPSLILGVCA 748

Query: 742 GIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYA 801
            I              +P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y 
Sbjct: 749 SI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYP 794

Query: 802 QRPMVESKTIRITNFHKLPAG 822
           Q+P+V ++ +   +F +LPAG
Sbjct: 795 QKPLVTTRAMEHLHFRQLPAG 815



 Score = 56.6 bits (135), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 57/121 (47%), Gaps = 14/121 (11%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           K+  +  A++ L    + H+ V       KA Y   +I R+++        DDRD+YGNK
Sbjct: 370 KEKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLMCALGRRAEDDRDHYGNK 429

Query: 509 RLELAGSLLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYG 554
           RL+LAG LL  +F  +F++   ++           KE NL   +    + SG  + L  G
Sbjct: 430 RLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKEVNLQFAIKAKTITSGLKYSLATG 489

Query: 555 N 555
           N
Sbjct: 490 N 490



 Score = 49.3 bits (116), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 9/80 (11%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEY---TRG------SQRVVRSDLV 391
           + KP + E+   T    P   RLR+LTYSAP+ VD+ Y    +G      ++ +    + 
Sbjct: 128 LSKPMMTEADGETATLFPKSARLRNLTYSAPLYVDVSYRVMKKGHDCEEVTETMEYPKVF 187

Query: 392 IGRMPIMLQSSKCVLRNKTE 411
           IG++PIML+SS C L  ++E
Sbjct: 188 IGKVPIMLRSSYCTLFQQSE 207


>gi|93278291|gb|ABF06601.1| RNA polymerase II second largest subunit, partial [Cheimonophyllum
            candidissimum]
          Length = 690

 Score =  214 bits (546), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 162/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 346  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKF 405

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR    + K+   Q  +  
Sbjct: 406  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRGYMDLEKKSGIQQLEEF 465

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS-AISMATPEY-- 1090
              P  +   R     +  L+ DG++APG  +    +++ K+ P    S  +   TP +  
Sbjct: 466  EKPSRQQTLRMKHGTYDKLEDDGLIAPGTGVNGEDIIIGKTAPIPPDSEELGQRTPTHTR 525

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++N +    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 526  RDVSTPLKSTESGMVDQVLITTNHDGQKFVKVRIRSTRIPQIGDKFASRHGQKGTIGITY 585

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 586  RQEDMPFTAEGIVPDIIINPHAI 608



 Score =  159 bits (403), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 75/165 (45%), Positives = 104/165 (63%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++N +    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 526  RDVSTPLKSTESGMVDQVLITTNHDGQKFVKVRIRSTRIPQIGDKFASRHGQKGTIGITY 585

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 586  RQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVES 645

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMV 1347
            V   L + GY  +G ++ Y G TG  L+A +Y GP YYQ+LKHMV
Sbjct: 646  VSMYLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMV 690



 Score =  112 bits (279), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 92/151 (60%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 40  EFNLALAVKHQTITNGLKYSLATGNWGDQKKTMSSKAGVSQVLNRYTYASTLSHLRRCNT 99

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM  I+  +    +++ +  
Sbjct: 100 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEE 159

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E  ++      S+P    VFVNG+  G+
Sbjct: 160 WGLE--SLEENAHSSTPTTK-VFVNGVWMGV 187



 Score = 87.8 bits (216), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 58/177 (32%), Positives = 88/177 (49%), Gaps = 22/177 (12%)

Query: 706 VNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQ 765
            N+G     A  ++ I     TH EI P  +LG+CA I              +P+P HNQ
Sbjct: 309 ANDGEFDPAARLKADINAHTWTHCEIHPSMILGICASI--------------IPFPDHNQ 354

Query: 766 APRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQ 825
           +PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  
Sbjct: 355 SPRNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNA 414

Query: 826 ISPGGAEELTARESCHEVLKIISFSISVAVFDSVWLG-----DVKQGVHQLSEEKEP 877
           I    A    +  +  + + +   SI   +F S++       + K G+ QL E ++P
Sbjct: 415 IV---AILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRGYMDLEKKSGIQQLEEFEKP 468


>gi|88601060|gb|ABD46526.1| RNA polymerase II second largest subunit, partial [Sistotrema
            coronilla]
          Length = 688

 Score =  214 bits (546), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 103/263 (39%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DT+   L Y Q+P+  ++++    F
Sbjct: 356  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFQVRMDTMANILYYPQKPLATTRSMTYLRF 415

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNAT+A++ YSGY+ ED++IMN++S+DRG  R + YR+     K+      +  
Sbjct: 416  RELPAGQNATVAILCYSGYNQEDSVIMNQSSIDRGLFRSMYYRSYSDTEKKVGILPLEEF 475

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  LD DG++APG  +    +++ K+ P    S      + T   
Sbjct: 476  ARPTRDDTLRLKHGSYEKLDDDGLIAPGTGVVGEDIIIGKTAPLPPDSEELGQRLRTHSK 535

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++V+V++N +    +K+ +R TR P++GDKF+SRHGQKG +G+  
Sbjct: 536  RDVSTPLKSTENGIVDQVVVTTNGDGLKFVKVRIRSTRIPQVGDKFASRHGQKGTVGITY 595

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
              EDMPF+  G+ PDII+NPH +
Sbjct: 596  RHEDMPFSAEGVTPDIIINPHAI 618



 Score =  133 bits (334), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 75/219 (34%), Positives = 115/219 (52%), Gaps = 11/219 (5%)

Query: 1124 LRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESGICPDIIMNPHGLKG 1175
            L +  RP   D    +HG        G+I  G  V  ED+   ++   P    +   L  
Sbjct: 472  LEEFARPTRDDTLRLKHGSYEKLDDDGLIAPGTGVVGEDIIIGKTAPLPP---DSEELGQ 528

Query: 1176 CDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1235
              R    ++V    K +    +++V+V++N +    +K+ +R TR P++GDKF+SRHGQK
Sbjct: 529  RLRTHSKRDVSTPLKSTENGIVDQVVVTTNGDGLKFVKVRIRSTRIPQVGDKFASRHGQK 588

Query: 1236 GVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAF 1295
            G +G+    EDMPF+  G+ PDII+NPH  PSRMT+G LIE L  K   + G   + T F
Sbjct: 589  GTVGITYRHEDMPFSAEGVTPDIIINPHAIPSRMTIGHLIECLLSKLATLTGREGDATPF 648

Query: 1296 GGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIY 1334
                +  V + L  +GY  +G ++ Y G TG+ L+  +Y
Sbjct: 649  TELTVESVSQLLREYGYQSRGLEVMYHGHTGKKLQVQVY 687



 Score =  108 bits (270), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 56/152 (36%), Positives = 92/152 (60%), Gaps = 6/152 (3%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F +   ++ +TITN L  ++ TGNW  ++  M  + GV+QVL+R ++ S L  + R N+
Sbjct: 39  EFSLSLAVKSNTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTFASTLSHLRRCNT 98

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNL+LM  I+  +    +++ +  
Sbjct: 99  PLGRDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMACISVGSLSAPVIEFLQE 158

Query: 304 IGIEHIAMFNGEELSSPG-VYLVFVNGILAGI 334
            G+E +     E  +S G    VFVNG+  G+
Sbjct: 159 WGLEGLE----ENANSHGSATKVFVNGVWMGV 186



 Score = 87.8 bits (216), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 43/97 (44%), Positives = 58/97 (59%), Gaps = 14/97 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 340 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYLTN 385

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
            Q R+DT+   L Y Q+P+  ++++    F +LPAG+
Sbjct: 386 FQVRMDTMANILYYPQKPLATTRSMTYLRFRELPAGQ 422


>gi|88601064|gb|ABD46528.1| RNA polymerase II second largest subunit, partial [Tulasnella sp.
            FCUG 2668]
          Length = 670

 Score =  214 bits (546), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 103/263 (39%), Positives = 160/263 (60%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DT+   L Y Q+P+  ++++    F
Sbjct: 347  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNYQVRMDTMANILYYPQKPLATTRSMEYLKF 406

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNAT+A++ YSGY+ ED++IMN++S+DRG  R + YR+     K+      +  
Sbjct: 407  RELPAGQNATVAILCYSGYNQEDSVIMNQSSIDRGLFRSMYYRSYTDAEKKVGILPLEEF 466

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  L+ DG++APG  +    +++ K+ P    S      + +   
Sbjct: 467  EKPTRDTTLRMKHGTYEKLEDDGLIAPGTGVTGEDIIIGKTAPLPPDSEELGQRLRSHTR 526

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VLV++N +    +K+ +R TR P++GDKF+SRHGQKG +G+  
Sbjct: 527  RDVSTPLKSTENGIVDQVLVTTNGDGLKFVKIRIRSTRIPQVGDKFASRHGQKGTVGITY 586

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
              EDMPF   GI PDII+NPH +
Sbjct: 587  RHEDMPFTAEGITPDIIINPHAI 609



 Score =  134 bits (336), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 63/144 (43%), Positives = 89/144 (61%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VLV++N +    +K+ +R TR P++GDKF+SRHGQKG +G+  
Sbjct: 527  RDVSTPLKSTENGIVDQVLVTTNGDGLKFVKIRIRSTRIPQVGDKFASRHGQKGTVGITY 586

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
              EDMPF   GI PDII+NPH  PSRMT+G LIE L  K   + GN  + T F    +  
Sbjct: 587  RHEDMPFTAEGITPDIIINPHAIPSRMTIGHLIECLLSKLATLIGNEGDATPFTELTVES 646

Query: 1303 VQEELIRHGYNYQGKDIFYSGITG 1326
            V E L +HGY  +G ++ Y G TG
Sbjct: 647  VSELLRQHGYQSRGLEVMYHGHTG 670



 Score =  108 bits (270), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/187 (33%), Positives = 98/187 (52%), Gaps = 13/187 (6%)

Query: 186 FDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINSQ 244
           F +   ++  TIT  L  ++ TGNW  ++  M  + GV+QVL+R ++ S L  + R N+ 
Sbjct: 48  FTLGAXVKNTTITQGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTFASTLSHLRRCNTP 107

Query: 245 FEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNI 304
             +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM+ I+       +++ +   
Sbjct: 108 LGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGTLSAPIIEFLQEW 167

Query: 305 GIEHIAMFNGEELSSPGVYLVFVNGILAGITCHHKEVC--------KPEIEESFNYTRQT 356
            IE +     E  +  G   VFVNG+  G+    +E+         K +I    +  R  
Sbjct: 168 DIEPLE----EHANGAGATKVFVNGVWVGVHRDAQELVMTLRRLRRKDDISAEVSIVRDI 223

Query: 357 TPHECRL 363
              E RL
Sbjct: 224 RERELRL 230



 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/97 (44%), Positives = 58/97 (59%), Gaps = 14/97 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 331 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYLTN 376

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
            Q R+DT+   L Y Q+P+  ++++    F +LPAG+
Sbjct: 377 YQVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQ 413



 Score = 42.4 bits (98), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 26/34 (76%)

Query: 499 LDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSEL 532
           LDDRD++G KRL+LAG LL+ +F  +FK+   ++
Sbjct: 1   LDDRDHFGKKRLDLAGPLLAGLFRMLFKKLTKDV 34


>gi|405120140|gb|AFR94911.1| DNA-directed RNA polymerase II large subunit [Cryptococcus neoformans
            var. grubii H99]
          Length = 1245

 Score =  214 bits (546), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 111/269 (41%), Positives = 167/269 (62%), Gaps = 12/269 (4%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DT++  L Y Q+P+  ++++    F
Sbjct: 777  IIPFPDHNQSPRNTYQSAMGKQAMGVCLTNYQLRMDTMVNVLYYPQKPLATTRSMEYLKF 836

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRN------SKCVLKQYPN 1027
             +LPAGQNA +A+M YSGY+ ED++IMN++S+DRG  R L +R+       K ++K    
Sbjct: 837  SELPAGQNAIVAIMCYSGYNQEDSVIMNQSSIDRGLFRSLYFRSYTDTEKMKGMVKAETI 896

Query: 1028 QTHDRILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS-AISMA 1086
            +  DR     ++  T     R+  LD DG+VAPG  +    +L+ K+ P    S  +   
Sbjct: 897  EKPDRNETLRMKHGTGD---RYAKLDVDGLVAPGTNVNGDDILIGKTAPLPEDSEELGQR 953

Query: 1087 TPEY--KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKG 1144
            T  +  +++    K +    +++V++S+N E    +K+ +R TR P+IGDKF+SRHGQKG
Sbjct: 954  TQLHTKRDISTPLKSTEQGVVDQVMLSTNGEGNMFVKIRVRSTRVPQIGDKFASRHGQKG 1013

Query: 1145 VIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
             IG+   QEDMPF   G+ PDII+NPH +
Sbjct: 1014 TIGITYRQEDMPFTAEGLVPDIIINPHAI 1042



 Score =  187 bits (474), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 88/188 (46%), Positives = 120/188 (63%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            +++    K +    +++V++S+N E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 960  RDISTPLKSTEQGVVDQVMLSTNGEGNMFVKIRVRSTRVPQIGDKFASRHGQKGTIGITY 1019

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   G+ PDII+NPH  PSRMT+G L+E L  K   + G   + T F    +  
Sbjct: 1020 RQEDMPFTAEGLVPDIIINPHAIPSRMTIGHLVECLLSKVSTLTGAEGDATPFTELTVEA 1079

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
            V + L   GY  +G ++ Y G TG  L+A +Y GP YYQ+LKHMV DKIHAR+RGP  +L
Sbjct: 1080 VSKVLRAKGYQSRGFELLYHGHTGRKLQAQVYFGPTYYQRLKHMVDDKIHARARGPLQIL 1139

Query: 1363 TRQPTGRR 1370
            TRQP   R
Sbjct: 1140 TRQPVEGR 1147



 Score =  116 bits (290), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 58/150 (38%), Positives = 90/150 (60%), Gaps = 6/150 (4%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQ 244
           +F +   +R +TIT+ L  A+ TGNW  R     R GV+QVL+R ++ S L  + R N+ 
Sbjct: 468 EFALNMAIRPNTITDGLKYALATGNWGKR--DNTRAGVSQVLNRYTFTSTLSHLRRTNTP 525

Query: 245 FEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNI 304
             +  K + PR L  + WGM+CP++TPEG ACGLVKNLALM++I+  +    +++ +   
Sbjct: 526 IGRDSKAAKPRQLHNTHWGMVCPAETPEGSACGLVKNLALMSYISVGSYSAPVMEFLEEW 585

Query: 305 GIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
           G+E ++ +      +P    VFVNG+  GI
Sbjct: 586 GLEDLSEYQ----DAPTATKVFVNGVWMGI 611



 Score = 92.4 bits (228), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/100 (45%), Positives = 61/100 (61%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH+EI P  +LGVCA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 761 THMEIHPSMILGVCASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVCLTN 806

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
            Q R+DT++  L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 807 YQLRMDTMVNVLYYPQKPLATTRSMEYLKFSELPAGQNAI 846



 Score = 56.2 bits (134), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 42/77 (54%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A D L    + H+         KA +L  M+ R+ +A      LDDRD++GNKRL+LAG 
Sbjct: 379 AFDILHKEFLPHVSTAEGFESKKAYFLGYMVHRLCMAALGRKELDDRDHFGNKRLDLAGP 438

Query: 516 LLSLMFEDVFKRFNSEL 532
           L++ MF  VF +   ++
Sbjct: 439 LMAEMFNVVFGKLREDM 455


>gi|320172588|gb|ADW24177.1| RNA polymerase II second largest subunit [Gloeophyllum trabeum]
          Length = 648

 Score =  214 bits (546), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 164/263 (62%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 313  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLRF 372

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 373  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEF 432

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS-AISMATPEY-- 1090
              P  +   R     +  ++ DG++APG  +    +++ K+ P    S  +   T  +  
Sbjct: 433  EKPTRDTTLRMKHGTYDKIEDDGLIAPGTGVNGDDIIIGKTAPIPPDSEELGQRTRSHTR 492

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V  + K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 493  RDVSTALKSTESGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITY 552

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 553  RQEDMPFTAEGITPDIIINPHAI 575



 Score =  145 bits (367), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 69/156 (44%), Positives = 97/156 (62%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V  + K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 493  RDVSTALKSTESGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITY 552

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 553  RQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVES 612

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPV 1338
            V   L + GY  +G ++ Y G TG  L+A +Y GP 
Sbjct: 613  VSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPT 648



 Score =  108 bits (271), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 93/151 (61%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++ +TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 7   EFNLSLAVKHNTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT 66

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNL+LM  I+  +    +++ +  
Sbjct: 67  PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMACISVGSLSAPVIEFLEE 126

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E  ++      ++P    VFVNG+  G+
Sbjct: 127 WGLE--SLEENAHSATPCTK-VFVNGVWMGV 154



 Score = 86.7 bits (213), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/177 (33%), Positives = 88/177 (49%), Gaps = 22/177 (12%)

Query: 706 VNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQ 765
            NEG+    A  ++       TH EI P  +LGVCA I              +P+P HNQ
Sbjct: 276 ANEGDFDPSARLKAPTHGHTWTHCEIHPSMILGVCASI--------------IPFPDHNQ 321

Query: 766 APRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQ 825
           +PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  
Sbjct: 322 SPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNA 381

Query: 826 ISPGGAEELTARESCHEVLKIISFSISVAVFDSVWLG-----DVKQGVHQLSEEKEP 877
           I    A    +  +  + + +   SI   +F S++       + K GV QL E ++P
Sbjct: 382 IV---AILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKP 435


>gi|46277267|gb|AAS86824.1| RNA polymerase II second largest subunit, partial [Eschscholzia
            californica]
          Length = 559

 Score =  214 bits (546), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 109/270 (40%), Positives = 167/270 (61%), Gaps = 19/270 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 221  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHF 280

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L +R+ +           ++ 
Sbjct: 281  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR---------DEEKK 331

Query: 1034 LGPLLEADTRKPV------YRHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            +G L++ D  +P        RH +   LD DG+  PG ++    V++ K+ P     +  
Sbjct: 332  MGTLIKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDDSQG 391

Query: 1085 MATP-EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1143
             A+    ++   S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQK
Sbjct: 392  QASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQK 451

Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G +G+   QEDMP+   GI PDII+NPH +
Sbjct: 452  GTVGMTYTQEDMPWTVEGITPDIIVNPHAI 481



 Score =  144 bits (364), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 68/157 (43%), Positives = 99/157 (63%)

Query: 1187 VSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQED 1246
             S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   QED
Sbjct: 403  TSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 462

Query: 1247 MPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEE 1306
            MP+   GI PDII+NPH  PSRMT+G+LIE + GK     G   + T F    + ++ + 
Sbjct: 463  MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 522

Query: 1307 LIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKL 1343
            L + GY  +G +  Y+G TG  L A I+ GP YYQ+L
Sbjct: 523  LHKCGYQMRGFETMYNGHTGRKLTAMIFLGPTYYQRL 559



 Score = 99.8 bits (247), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/141 (39%), Positives = 78/141 (55%), Gaps = 24/141 (17%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVS-----ESGIRPG-----VTTHLEIAPFTLLGVCA 741
           + D + +G IEY+D  E   + I+++      + + P        TH EI P  +LGVCA
Sbjct: 160 WHDLVAKGFIEYVDTEEEETTMISMTINDLVSARVNPKEAYSETYTHCEIHPSLILGVCA 219

Query: 742 GIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYA 801
            I              +P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y 
Sbjct: 220 SI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYP 265

Query: 802 QRPMVESKTIRITNFHKLPAG 822
           Q+P+V ++ +   +F +LPAG
Sbjct: 266 QKPLVTTRAMEHLHFRQLPAG 286



 Score = 77.0 bits (188), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 40/88 (45%), Positives = 54/88 (61%), Gaps = 8/88 (9%)

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHI 309
           K++ PR L  S WGM+CP++TPEG+ACGLVKNLALM +IT  +    +L+ +     E  
Sbjct: 1   KLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEFL-----EEW 55

Query: 310 AMFNGEELSS---PGVYLVFVNGILAGI 334
           +  N EE+S    P    +FVNG   GI
Sbjct: 56  STENFEEISPAVIPQSTKIFVNGCWVGI 83


>gi|55584694|gb|AAV53578.1| RNA polymerase II second largest subunit [Boletellus projectellus]
          Length = 899

 Score =  214 bits (546), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 105/263 (39%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 536  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKF 595

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 596  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEF 655

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  ++ DG++APG  +    +++ K+ P    S        T   
Sbjct: 656  EKPTRDTTLRMKHGTYDKIEDDGLIAPGTNVRGEDIIIGKTAPIPPDSEELGQRTRTHTR 715

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 716  RDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITY 775

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PD+I+NPH +
Sbjct: 776  RQEDMPFTAEGIVPDLIINPHAI 798



 Score =  191 bits (486), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 90/184 (48%), Positives = 122/184 (66%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 716  RDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITY 775

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PD+I+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 776  RQEDMPFTAEGIVPDLIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVES 835

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
            V   L + GY  +G ++ Y G TG+ L+A IY GP YYQ+LKHMV DKIH+R+RGP  +L
Sbjct: 836  VSTFLRQKGYQSRGLEVMYHGHTGKKLQAQIYLGPTYYQRLKHMVDDKIHSRARGPVQIL 895

Query: 1363 TRQP 1366
            TRQP
Sbjct: 896  TRQP 899



 Score =  111 bits (278), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 93/151 (61%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKM-ERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 229 EFNLSLAVKHQTITNGLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNT 288

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM+ I+  +    +++ +  
Sbjct: 289 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSYSAPVIEFLEE 348

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E  ++      S+P    VFVNG+  G+
Sbjct: 349 WGLE--SLEENAHSSTPCTK-VFVNGVWMGV 376



 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 85/165 (51%), Gaps = 22/165 (13%)

Query: 718 ESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGK 777
           ++GI     TH EI P  +LGVCA I              +P+P HNQ+PRNTYQ AMGK
Sbjct: 511 KAGITAHTWTHCEIHPSMILGVCASI--------------IPFPDHNQSPRNTYQSAMGK 556

Query: 778 QAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQISPGGAEELTAR 837
           QAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  I    A    + 
Sbjct: 557 QAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIV---AILCYSG 613

Query: 838 ESCHEVLKIISFSISVAVFDSVWLG-----DVKQGVHQLSEEKEP 877
            +  + + +   SI   +F S++       + K GV QL E ++P
Sbjct: 614 YNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKP 658



 Score = 60.5 bits (145), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 58/114 (50%), Gaps = 14/114 (12%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A++ L    + H+ +       KA +   MI R++LA  +   LDDRD++G KRL+LAG 
Sbjct: 140 AQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAALERRELDDRDHFGKKRLDLAGP 199

Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYGN 555
           LL+ +F  +FK+   ++           KE NLS  V    + +G  + L  GN
Sbjct: 200 LLANLFRMLFKKLTKDVYRYLQKCVETHKEFNLSLAVKHQTITNGLKYSLATGN 253


>gi|345561256|gb|EGX44352.1| hypothetical protein AOL_s00193g80 [Arthrobotrys oligospora ATCC
            24927]
          Length = 1258

 Score =  214 bits (545), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 103/263 (39%), Positives = 159/263 (60%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 787  IIPFPDHNQSPRNTYQSAMGKQAMGIFLTNFNERMDTMANILYYPQKPLATTRSMEFLKF 846

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA + +M YSGY+ ED++IMN++S+DRG  R L YR      K+    T +  
Sbjct: 847  RELPAGQNAIVGIMCYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYMDSEKRIGMTTIEEF 906

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPT-ISVSAISMATPEY-- 1090
              P+     R     +  LD DG+VAPG ++    +++ K+ P       +   T  +  
Sbjct: 907  EKPMRNNTLRLKHGTYDKLDDDGLVAPGVRVSGEDIIIGKTAPIPADTEELGQRTKNHTK 966

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    + +    +++V++++N+E    +K+ +R T+ P+IGDKF+SRHGQKG IG+  
Sbjct: 967  RDVSTPLRSTENGIVDQVMLTTNAEGMRFVKVRMRTTKVPQIGDKFASRHGQKGTIGITY 1026

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
              EDMPF   GI PD+I+NPH +
Sbjct: 1027 RHEDMPFTAEGIVPDLIINPHAI 1049



 Score =  177 bits (450), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 82/190 (43%), Positives = 120/190 (63%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    + +    +++V++++N+E    +K+ +R T+ P+IGDKF+SRHGQKG IG+  
Sbjct: 967  RDVSTPLRSTENGIVDQVMLTTNAEGMRFVKVRMRTTKVPQIGDKFASRHGQKGTIGITY 1026

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
              EDMPF   GI PD+I+NPH  PSRMT+  LIE    K   + G   + T F    + +
Sbjct: 1027 RHEDMPFTAEGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTEVTVEN 1086

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
            V   L  HGY  +G ++ Y+G TG+ L   ++ GP YYQ+L+HMV DKIHAR+RGP  +L
Sbjct: 1087 VSRLLREHGYQSRGFEVMYNGHTGKKLVCQVFLGPTYYQRLRHMVDDKIHARARGPVQIL 1146

Query: 1363 TRQPTGRRWK 1372
            TRQP   R +
Sbjct: 1147 TRQPVEGRAR 1156



 Score =  112 bits (281), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 56/150 (37%), Positives = 91/150 (60%), Gaps = 3/150 (2%)

Query: 186 FDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQ 244
           F++   ++ +TITN L  ++ TGNW   ++    + GV+QVL+R ++ S L  + R N+ 
Sbjct: 466 FNVTLAIKSNTITNGLKYSLATGNWGDQKKPASAKAGVSQVLNRYTFASTLSHLRRTNTP 525

Query: 245 FEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNI 304
             +  K++ PR L  + WG++CP++TPEG+ACGLVKNL+LM++IT  +  + +   M   
Sbjct: 526 IGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSYITVGSPTEPIQAFMEQR 585

Query: 305 GIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            +E +  F  E   SP V  VF+NG   G+
Sbjct: 586 NLEPLETF--EPGRSPNVTKVFINGSWVGV 613



 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 771 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGIFLTN 816

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 817 FNERMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 856



 Score = 50.1 bits (118), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 40/73 (54%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A++ +    + HI         KA +L  M+ +M+    +    DDRD++G KRL+LAG 
Sbjct: 376 AKEIMQKELLPHISQAEGHETRKAFFLGYMVHKMLQCALERRETDDRDHFGRKRLDLAGP 435

Query: 516 LLSLMFEDVFKRF 528
           LL+ +F  +FK+ 
Sbjct: 436 LLANLFRMLFKKL 448


>gi|194320291|gb|ACF48386.1| RNA polymerase II second largest subunit [Melanelixia fuliginosa]
          Length = 683

 Score =  214 bits (545), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 110/267 (41%), Positives = 167/267 (62%), Gaps = 11/267 (4%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DT+   L Y Q+P+  ++++    F
Sbjct: 352  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYQQRMDTMANILYYPQKPLATTRSMEFLKF 411

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR      K+      ++ 
Sbjct: 412  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQEKRIGMSVVEQF 471

Query: 1034 LGPLLEADTRKPVY-RHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKE 1092
              P + +DT K  +  +  LD DG+VAPG ++    +++ K+ P I+  A  +   +  +
Sbjct: 472  EKP-MRSDTLKLKHGTYDKLDDDGLVAPGVRVSGEDIIIGKTAP-IAPDAEELG--QRTK 527

Query: 1093 VPVSYKGSVP------SYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVI 1146
            + V    S P        +++VL+S+N+E    +K+ +R T+ P+IGDKF+SRHGQKG I
Sbjct: 528  LHVKRDTSTPLRSTENGIVDQVLLSTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTI 587

Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G+   QEDMPF   G+ PD+I+NPH +
Sbjct: 588  GITYRQEDMPFTSEGMVPDLIINPHAI 614



 Score =  130 bits (328), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 74/221 (33%), Positives = 116/221 (52%), Gaps = 13/221 (5%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESG-ICPDIIMNPHGL 1173
            ++ Q  +P   D    +HG        G++  G+ V  ED+   ++  I PD       L
Sbjct: 467  VVEQFEKPMRSDTLKLKHGTYDKLDDDGLVAPGVRVSGEDIIIGKTAPIAPD----AEEL 522

Query: 1174 KGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
                ++   ++     + +    +++VL+S+N+E    +K+ +R T+ P+IGDKF+SRHG
Sbjct: 523  GQRTKLHVKRDTSTPLRSTENGIVDQVLLSTNAEGLRFVKVRMRTTKIPQIGDKFASRHG 582

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGT 1293
            QKG IG+   QEDMPF   G+ PD+I+NPH  PSRMT+  LIE L  K   + G   + T
Sbjct: 583  QKGTIGITYRQEDMPFTSEGMVPDLIINPHAIPSRMTIAHLIECLLSKVSSLRGFEGDAT 642

Query: 1294 AFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIY 1334
             F    +  V   L  HGY  +G ++ Y+G TG  L   ++
Sbjct: 643  PFTEVTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVTQVF 683



 Score =  111 bits (278), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 91/151 (60%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++   +TN L  ++ TGNW   ++    + GV+QVL+R ++ S L  + R N+
Sbjct: 28  EFNMTLAVKSTHLTNGLRYSLATGNWGDQKKAASVKAGVSQVLNRYTFASTLSHLRRTNT 87

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT     + ++  M  
Sbjct: 88  PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIVDFMIQ 147

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
             +E +  +  E L+SP    +FVNG+  G+
Sbjct: 148 RSMEVLEEY--EPLNSPNATKIFVNGVWVGV 176



 Score = 92.4 bits (228), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/100 (44%), Positives = 59/100 (59%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 336 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 381

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
            Q R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 382 YQQRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 421


>gi|332796432|ref|YP_004457932.1| RNA polymerase subunit B [Acidianus hospitalis W1]
 gi|332694167|gb|AEE93634.1| RNA polymerase subunit B [Acidianus hospitalis W1]
          Length = 1123

 Score =  214 bits (545), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 107/262 (40%), Positives = 162/262 (61%), Gaps = 2/262 (0%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++PYP HNQ+PRNTYQ AM KQA+G    N Q R D+  + L Y Q+P+V+++ + I  +
Sbjct: 650  IIPYPEHNQSPRNTYQSAMAKQALGLYASNYQLRTDSRAHFLHYPQKPLVQTRALDIIGY 709

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
            +  PAG+NA +AVMS++GY++EDA+IMNK+S++RG  R   +R       +YP    D+I
Sbjct: 710  NNRPAGENAILAVMSFTGYNMEDAIIMNKSSVERGMFRSTFFRLYSAEEIKYPGGQEDKI 769

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEY--K 1091
              P       K    +++LD++GIV P  ++    VL+ K  P   +      +PE   +
Sbjct: 770  QLPEPGVRGYKGSDYYKSLDENGIVPPEVEVKGGDVLIGKVSPPRFLQEFKELSPEQAKR 829

Query: 1092 EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVE 1151
            +  V  +      ++ VL++  SE   L+K+ +R  R PE+GDKF++RHGQKGVIG+++ 
Sbjct: 830  DTSVITRHGEKGIVDLVLITETSEGNKLVKVRVRDLRIPELGDKFATRHGQKGVIGMLIP 889

Query: 1152 QEDMPFNESGICPDIIMNPHGL 1173
            Q DMP+   GI PDII+NPH L
Sbjct: 890  QADMPYTVKGIVPDIILNPHSL 911



 Score =  179 bits (453), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 84/173 (48%), Positives = 119/173 (68%)

Query: 1200 VLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDII 1259
            VL++  SE   L+K+ +R  R PE+GDKF++RHGQKGVIG+++ Q DMP+   GI PDII
Sbjct: 846  VLITETSEGNKLVKVRVRDLRIPELGDKFATRHGQKGVIGMLIPQADMPYTVKGIVPDII 905

Query: 1260 MNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDI 1319
            +NPH  PSRMT+G+++E LAGK   + G   + T F  T + ++Q++L+  G+   G ++
Sbjct: 906  LNPHSLPSRMTLGQIMEALAGKYAALSGKTVDATPFYNTPIEELQKKLLDFGFLPDGTEV 965

Query: 1320 FYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
             Y G TG+ ++  I  G VYYQKL HMV DK+H R+RGP  +LTRQPT  R +
Sbjct: 966  VYDGRTGQKVKGRILYGVVYYQKLHHMVADKMHGRARGPIQILTRQPTEGRAR 1018



 Score =  105 bits (263), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 55/135 (40%), Positives = 78/135 (57%), Gaps = 15/135 (11%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKR 751
           FD  + EGKIE+LD  E  +++IA+  S + P   THLEI    +LG+ A I        
Sbjct: 600 FDTLVKEGKIEFLDAEEEENAYIALEPSKVTPE-HTHLEIWTPAILGITASI-------- 650

Query: 752 FHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTI 811
                 +PYP HNQ+PRNTYQ AM KQA+G    N Q R D+  + L Y Q+P+V+++ +
Sbjct: 651 ------IPYPEHNQSPRNTYQSAMAKQALGLYASNYQLRTDSRAHFLHYPQKPLVQTRAL 704

Query: 812 RITNFHKLPAGKCQI 826
            I  ++  PAG+  I
Sbjct: 705 DIIGYNNRPAGENAI 719



 Score = 90.1 bits (222), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 92/169 (54%), Gaps = 11/169 (6%)

Query: 180 KIKAAQFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMT 239
           K++  +  +   +R D IT  +  A+ TGNW        R GV+Q+L R +++S L  + 
Sbjct: 370 KVRGRRLTLNALVRPDIITERIRHAMATGNWV-----GGRTGVSQLLDRTNWLSMLSHLR 424

Query: 240 RINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLK 299
           R+ S   + +     R L G+QWG +CP +TPEG   GLVKNLAL+  I+   ++K + K
Sbjct: 425 RVISSLARGQPNFEARDLHGTQWGRMCPFETPEGPNSGLVKNLALLAQISVGINDKIVEK 484

Query: 300 IMYNIGI----EHIAMFN-GEELSSPGVY-LVFVNGILAGITCHHKEVC 342
           ++Y +G+    E I   + GE+ SS   +  V +NG L G   + +E+ 
Sbjct: 485 MLYELGVIPLEELIRKIDEGEDPSSYTNWSKVILNGRLVGYYPNGEELA 533



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 93/236 (39%), Gaps = 29/236 (12%)

Query: 314 GEELSSPGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHECRLRDLT--YSAP 371
           GE+   PG Y + +NG    +    +++    +      +     H  ++   T  Y  P
Sbjct: 139 GEDPKDPGGYFI-INGT-EKVIVTQEDLATNRVLVDEGKSGSNVTHTAKIISSTAGYRVP 196

Query: 372 ITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKTEYTSS------------SRRA 419
           IT  IE  R S   V    V GR+P  +      L    + T +                
Sbjct: 197 IT--IERLRDSTIHVSFPAVPGRIPFAILMRALGLETDRDITFAVSFDEEIQNELLPSLE 254

Query: 420 STSSVTMHSQRTSPLLSCKKLRQKRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKA 479
             SS+T        + +   + QKR     +  ++ A   L    + H+ +     K KA
Sbjct: 255 QASSITTQEDALDFIGNRVAIGQKR-----ENRIERAEQVLDKYFLPHLGLTPADRKKKA 309

Query: 480 MYLAVMIRRMV---LALSDPDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSEL 532
            YL   + +++   L   +PD   D+D+Y NKRL+LAG L S +F   FK F  +L
Sbjct: 310 YYLGYAVSKLIELQLGRREPD---DKDHYANKRLKLAGDLFSSLFRVAFKAFVKDL 362



 Score = 47.0 bits (110), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 37/61 (60%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQ 400
           V KP + E+    R+ TP E RLR+LTY+API + +     +     +++ IG +PIML+
Sbjct: 62  VGKPRVREADRGDREITPMEARLRNLTYAAPIYLTMIPVENNIEGEPTEVYIGDLPIMLK 121

Query: 401 S 401
           S
Sbjct: 122 S 122



 Score = 45.8 bits (107), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 38/61 (62%), Gaps = 1/61 (1%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           + D+W +V S+ K +GLV+ H+DSF+ FI  ++++++     I +++ P   +K   I V
Sbjct: 4   VDDRWAIVESYFKSRGLVRQHLDSFNDFIKNKLQEIIDEQGEIETEI-PGLKIKLGKIRV 62

Query: 172 G 172
           G
Sbjct: 63  G 63


>gi|341859028|gb|AEK97424.1| ribosomal polymerase II second largest subunit [Beauveria bassiana]
 gi|341859030|gb|AEK97425.1| ribosomal polymerase II second largest subunit [Beauveria bassiana]
 gi|341859032|gb|AEK97426.1| ribosomal polymerase II second largest subunit [Beauveria bassiana]
 gi|341859034|gb|AEK97427.1| ribosomal polymerase II second largest subunit [Beauveria bassiana]
 gi|341859036|gb|AEK97428.1| ribosomal polymerase II second largest subunit [Beauveria bassiana]
 gi|341859038|gb|AEK97429.1| ribosomal polymerase II second largest subunit [Beauveria bassiana]
          Length = 703

 Score =  214 bits (545), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 104/264 (39%), Positives = 165/264 (62%), Gaps = 5/264 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 362  IIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSMEFLKF 421

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L +R+     K+      +  
Sbjct: 422  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYSDQEKKVGLNYTEIF 481

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMP----TISVSAISMATPE 1089
              P  ++  R     +  LD+DGIVAPG ++    +++ K+ P    T  + A + A  +
Sbjct: 482  EKPFHQSTLRMKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAPIDPETQDLGARTTAH-Q 540

Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             +++    + +    +++V+V+ N+++   +K+ +R T+ P+IGDKF+SRHGQKG IG+ 
Sbjct: 541  RRDISTPLRSTENGIVDQVIVTVNADNVKYVKVRVRTTKIPQIGDKFASRHGQKGTIGVT 600

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
              QEDMPF   G+ PDII+NPH +
Sbjct: 601  YRQEDMPFTREGVTPDIIINPHAI 624



 Score =  150 bits (378), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 68/162 (41%), Positives = 104/162 (64%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            +++    + +    +++V+V+ N+++   +K+ +R T+ P+IGDKF+SRHGQKG IG+  
Sbjct: 542  RDISTPLRSTENGIVDQVIVTVNADNVKYVKVRVRTTKIPQIGDKFASRHGQKGTIGVTY 601

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   G+ PDII+NPH  PSRMT+  LIE L  K   +EG   + T F    +  
Sbjct: 602  RQEDMPFTREGVTPDIIINPHAIPSRMTIAHLIECLLSKVSTLEGMEGDATPFTDVTVDS 661

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLK 1344
            V + L +HGY  +G +I Y+G TG+ L A ++ GP YYQ+L+
Sbjct: 662  VSDLLRKHGYQSRGFEIMYNGHTGKKLRAQVFFGPTYYQRLR 703



 Score =  111 bits (277), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 91/151 (60%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMER-QGVTQVLSRLSYISGLGMMTRINS 243
            F++   ++  T++N L  ++ TGNW  ++  M    GV+QVL+R ++ S L  + R N+
Sbjct: 40  HFNLAVGVKPGTLSNGLKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNT 99

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNL+LM +++  +  + ++  M N
Sbjct: 100 PIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSPAEPLIDFMIN 159

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E I  +  E L  P    +FVNG   G+
Sbjct: 160 RGMEVIEEY--EPLRYPHATKIFVNGTWVGV 188



 Score = 89.4 bits (220), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 346 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGFFLTN 391

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 392 YSRRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 431


>gi|6606131|gb|AAF19078.1|AF107806_1 DNA-dependent RNA polymerase II RPB140, partial [Microglossum viride]
          Length = 938

 Score =  214 bits (545), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 107/286 (37%), Positives = 168/286 (58%), Gaps = 3/286 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 563  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDQRMDTMANILYYPQKPLATTRSMEYLKF 622

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R L +R+     K+      ++ 
Sbjct: 623  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYTDQEKRIGMNVVEQF 682

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAISMATPEY-- 1090
              P      +     +  LD DG+VAPG ++    +++ K+ P       +   T  +  
Sbjct: 683  EKPFRNDTLKLKHGTYDKLDDDGLVAPGVRVSGEDIIIGKTAPIAPDNEELGQRTKAHSK 742

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++     + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHGQKG IG+I 
Sbjct: 743  RDASTPLRSTENGIVDQVLITTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGIIY 802

Query: 1151 EQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSY 1196
             QEDMPF   GI PD+I+NPH +     I    E  +S   S+  Y
Sbjct: 803  RQEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQLSKVASLSGY 848



 Score =  184 bits (467), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 100/259 (38%), Positives = 146/259 (56%), Gaps = 13/259 (5%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESG-ICPDIIMNPHGL 1173
            ++ Q  +P   D    +HG        G++  G+ V  ED+   ++  I PD       L
Sbjct: 678  VVEQFEKPFRNDTLKLKHGTYDKLDDDGLVAPGVRVSGEDIIIGKTAPIAPD----NEEL 733

Query: 1174 KGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
                +    ++     + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHG
Sbjct: 734  GQRTKAHSKRDASTPLRSTENGIVDQVLITTNAEGLRFVKVRMRTTKIPQIGDKFASRHG 793

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGT 1293
            QKG IG+I  QEDMPF   GI PD+I+NPH  PSRMT+  LIE    K   + G   + T
Sbjct: 794  QKGTIGIIYRQEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQLSKVASLSGYEGDAT 853

Query: 1294 AFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHA 1353
             F    + +V + L  HGY  +G +I Y G TG  L A ++ GP YYQ+L+HMV DKIHA
Sbjct: 854  PFTDVTVDNVSKLLREHGYQSRGFEIMYHGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHA 913

Query: 1354 RSRGPRVVLTRQPTGRRWK 1372
            R+RGP  +LTRQP   R +
Sbjct: 914  RARGPVQILTRQPVEGRAR 932



 Score =  108 bits (271), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 88/151 (58%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F+    ++  T+T  L  ++ TGNW   ++      GV+QVL+R ++ S L  + R N+
Sbjct: 238 EFNPALGIKSTTLTAGLKYSLATGNWGDQKKAASSTAGVSQVLNRYTFASTLSHLRRTNT 297

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM ++T       +++ M  
Sbjct: 298 PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYVTVGTPSDPIVEFMIQ 357

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
             +E +  +  E L SP    VFVNG+  G+
Sbjct: 358 RSMEVLEEY--EPLRSPNATKVFVNGVWVGV 386



 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 81/176 (46%), Gaps = 44/176 (25%)

Query: 681 LNMHQFLGFKRFDDFLYEGKIEYLDVNEGNDSHIAVS----------------------- 717
           L   Q  G+  F   + EG +EY+D  E     I ++                       
Sbjct: 471 LEEKQERGYFGFQGLIDEGVVEYVDAEEEETVMIVMTPEDLEISRQLQAGYQIQEDNSGE 530

Query: 718 -----ESGIRPG--VTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNT 770
                ++ ++P   + TH EI P  +LG+CA I              +P+P HNQ+PRNT
Sbjct: 531 LNRRVKAPMKPTAHIWTHCEIHPSMILGICASI--------------IPFPDHNQSPRNT 576

Query: 771 YQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
           YQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 577 YQSAMGKQAMGVFLTNFDQRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAI 632



 Score = 54.7 bits (130), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 42/77 (54%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           ARD +    + HI         KA +L  M+ +++         DDRD++G KRL+LAG 
Sbjct: 149 ARDIMQKELLPHISQKEGSETRKAFFLGYMVHKLLQCALGRRETDDRDHFGKKRLDLAGP 208

Query: 516 LLSLMFEDVFKRFNSEL 532
           LL+ +F ++FK+   +L
Sbjct: 209 LLAKLFRNLFKKLTQDL 225


>gi|123979366|gb|ABM81508.1| RNA polymerase II second largest subunit [Pyxine sorediata]
          Length = 704

 Score =  214 bits (545), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 111/288 (38%), Positives = 172/288 (59%), Gaps = 7/288 (2%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R++T+ + L Y Q+P+  ++++    F
Sbjct: 363  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDQRMETMSHILYYPQKPLATTRSMEFLKF 422

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR+     K+    T ++ 
Sbjct: 423  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKKIGMYTMEQF 482

Query: 1034 LGPLLEADTRKPVY-RHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT----P 1088
              P L +DT K  +  +  LD DGI+ PG ++    +++ K+ P I+  A  +       
Sbjct: 483  EKP-LRSDTLKLKHGTYEKLDDDGIIIPGARVSGEDIIIGKTAP-IAPDAEELGQRTKLH 540

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
              ++     + +    +++VL++ NSE    +K+ +R T+ P+IGDKF+SRHGQKG IG+
Sbjct: 541  NKRDASTPLRSTESGLVDQVLLTVNSEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGI 600

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSY 1196
               QEDMPF   G+ PD+I+NPH +     I    E  +S   S+  Y
Sbjct: 601  TYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGY 648



 Score =  145 bits (366), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 81/230 (35%), Positives = 121/230 (52%), Gaps = 13/230 (5%)

Query: 1124 LRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESG-ICPDIIMNPHGLK 1174
            + Q  +P   D    +HG        G+I  G  V  ED+   ++  I PD       L 
Sbjct: 479  MEQFEKPLRSDTLKLKHGTYEKLDDDGIIIPGARVSGEDIIIGKTAPIAPDA----EELG 534

Query: 1175 GCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQ 1234
               ++   ++     + +    +++VL++ NSE    +K+ +R T+ P+IGDKF+SRHGQ
Sbjct: 535  QRTKLHNKRDASTPLRSTESGLVDQVLLTVNSEGLRFVKVRMRTTKIPQIGDKFASRHGQ 594

Query: 1235 KGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTA 1294
            KG IG+   QEDMPF   G+ PD+I+NPH  PSRMT+  LIE    K   + G   + T 
Sbjct: 595  KGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGYEGDATP 654

Query: 1295 FGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLK 1344
            F    +  V   L  HGY  +G ++ Y+G TG  L A ++ GP YYQ+L+
Sbjct: 655  FTDVTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLR 704



 Score =  114 bits (284), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 53/151 (35%), Positives = 94/151 (62%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW   ++    + GV+QVL+R ++ S L  + R N+
Sbjct: 39  EFNLTLGVKSTTITNGLKYSLATGNWGEQKKASSSKAGVSQVLNRFTFASTLSHLRRTNT 98

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM +++     + +++ + +
Sbjct: 99  PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYVSVGTPSEGIVEFLLS 158

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
             +E +  +  + L+SP    +FVNG+  GI
Sbjct: 159 RQMEPLEEY--DPLASPHATKIFVNGVWVGI 187



 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/100 (42%), Positives = 59/100 (59%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 347 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 392

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R++T+ + L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 393 FDQRMETMSHILYYPQKPLATTRSMEFLKFRELPAGQNAI 432


>gi|89274896|gb|ABD65889.1| RNA polymerase II second largest subunit, partial [Phaeolus
            schweinitzii]
          Length = 887

 Score =  214 bits (545), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 105/263 (39%), Positives = 163/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 519  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLRF 578

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++++DRG  R + YR+   + K+   Q  +  
Sbjct: 579  RELPAGQNAIVAILCYSGYNQEDSVIMNQSAIDRGLFRSMYYRSYMDLEKKSGIQQLEEF 638

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS-AISMATPEY-- 1090
              P  E   R     +  L+ DG++APG  +    +++ K+ P    S  +   T  +  
Sbjct: 639  EKPTRENTLRMKHGTYDKLEDDGLIAPGTNVNGEDIIIGKTAPIPPDSEELGQRTRAHTR 698

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++N+E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 699  RDVSTPLKSTESGIIDQVLITTNAEGQKFVKIRVRSTRVPQIGDKFASRHGQKGTIGITY 758

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDI++NPH +
Sbjct: 759  RQEDMPFTAEGITPDIVINPHAI 781



 Score =  192 bits (488), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 90/188 (47%), Positives = 124/188 (65%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++N+E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 699  RDVSTPLKSTESGIIDQVLITTNAEGQKFVKIRVRSTRVPQIGDKFASRHGQKGTIGITY 758

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDI++NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 759  RQEDMPFTAEGITPDIVINPHAIPSRMTIGHLVECLLSKVATIIGNEGDATPFTELTVEG 818

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
            V + L + GY+ +G +I Y G TG  L+A +Y GP YYQ+LKHMV DKIH+R+RGP  +L
Sbjct: 819  VSDVLRQKGYHSRGLEIMYHGHTGRKLQAQVYLGPTYYQRLKHMVDDKIHSRARGPVQIL 878

Query: 1363 TRQPTGRR 1370
            TRQP   R
Sbjct: 879  TRQPVEGR 886



 Score =  109 bits (272), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 91/151 (60%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKM-ERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++ +TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 215 EFNLNLAVKHNTITNGLKYSLATGNWGDQKRTMASKAGVSQVLNRYTYASTLSHLRRCNT 274

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNL+LM+ IT       +++ +  
Sbjct: 275 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSCITVGTLSAPVIEFLEE 334

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E +        S+     VFVNG+  G+
Sbjct: 335 WGLESL---EENAHSTIPCTKVFVNGVWMGV 362



 Score = 86.7 bits (213), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 47/121 (38%), Positives = 65/121 (53%), Gaps = 14/121 (11%)

Query: 706 VNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQ 765
            N+G+    A  ++       TH EI P  +LGVCA I              +P+P HNQ
Sbjct: 482 ANDGDFDPAARLKANPNAHTWTHCEIHPSMILGVCASI--------------IPFPDHNQ 527

Query: 766 APRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQ 825
           +PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  
Sbjct: 528 SPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNA 587

Query: 826 I 826
           I
Sbjct: 588 I 588



 Score = 60.5 bits (145), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 59/114 (51%), Gaps = 14/114 (12%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A++ L    + HI +       KA +   M+ R++LA  + + LDDRD++G KRL+LAG 
Sbjct: 126 AQEILQKEMLPHISMAEGSESKKAYFFGYMVHRLLLAAMEREDLDDRDHFGKKRLDLAGP 185

Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYGN 555
           LLS +F  +F++   ++           KE NL+  V    + +G  + L  GN
Sbjct: 186 LLSNLFRMLFRKLTKDVYRYLQKCVETHKEFNLNLAVKHNTITNGLKYSLATGN 239


>gi|56694364|gb|AAW22922.1| RNA polymerase II second largest subunit [Amborella trichopoda]
          Length = 516

 Score =  214 bits (545), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 110/271 (40%), Positives = 168/271 (61%), Gaps = 21/271 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 175  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHF 234

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L +R+ +           ++ 
Sbjct: 235  RQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR---------DEEKK 285

Query: 1034 LGPLLEADTRKPV------YRHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            +G L++ D  +P        RH +   LD DG+  PG ++    V++ K+ P I+   + 
Sbjct: 286  MGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP-ITQEEMQ 344

Query: 1085 MATPEY--KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQ 1142
                 Y  ++   S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQ
Sbjct: 345  GQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQ 404

Query: 1143 KGVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            KG +G+   QEDMP+   GI PDII+NPH +
Sbjct: 405  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAI 435



 Score =  151 bits (382), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 71/160 (44%), Positives = 102/160 (63%)

Query: 1187 VSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQED 1246
             S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   QED
Sbjct: 357  TSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 416

Query: 1247 MPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEE 1306
            MP+   GI PDII+NPH  PSRMT+G+LIE + GK     G   + T F    + ++ + 
Sbjct: 417  MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 476

Query: 1307 LIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHM 1346
            L + GY  +G +  Y+G TG  L A I+ GP YYQ+LKHM
Sbjct: 477  LHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHM 516



 Score =  101 bits (252), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 63/171 (36%), Positives = 85/171 (49%), Gaps = 39/171 (22%)

Query: 677 RPTFLNMHQFLGFKRFD---------------DFLYEGKIEYLDVNEGNDSHIAVSESGI 721
           RP F+   Q L  K+ D               D + +G IEY+D  E   + I+++ S +
Sbjct: 84  RPLFIVEKQRLLIKKSDIRALQQRESPDEGWHDLVAKGFIEYVDTEEEETTMISMTISDL 143

Query: 722 RPG----------VTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTY 771
                          TH EI P  +LGVCA I              +P+P HNQ+PRNTY
Sbjct: 144 VSARLNPEEAYSETYTHCEIHPSLILGVCASI--------------IPFPDHNQSPRNTY 189

Query: 772 QCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAG 822
           Q AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F +LPAG
Sbjct: 190 QSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG 240


>gi|45545329|gb|AAS67512.1| DNA-dependent RNA polymerase II second largest subunit, partial
            [Diploschistes muscorum]
          Length = 901

 Score =  214 bits (545), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 105/263 (39%), Positives = 159/263 (60%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 559  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDERMDTMANILYYPQKPLATTRSMEFLKF 618

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R L YR      K+      ++ 
Sbjct: 619  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYVEQEKRVGMSLVEQF 678

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAISMATPEY-- 1090
              PL     R     +  LD DG++APG ++    V++ K+ P       +   T  +  
Sbjct: 679  EKPLRSETLRLKHGTYEKLDDDGLIAPGVRVSGEDVIIGKTAPIAPDTDELGQRTKLHSK 738

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++     + +    ++KVL+++N E    +K+ +R T+ P+IGDKF+SRHGQKG IG+  
Sbjct: 739  RDASTPLRSTENGIVDKVLLTTNQEGLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITY 798

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PD+I+NPH +
Sbjct: 799  RQEDMPFTAEGITPDLIINPHAI 821



 Score =  149 bits (376), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 83/232 (35%), Positives = 124/232 (53%), Gaps = 13/232 (5%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESG-ICPDIIMNPHGL 1173
            L+ Q  +P   +    +HG        G+I  G+ V  ED+   ++  I PD       L
Sbjct: 674  LVEQFEKPLRSETLRLKHGTYEKLDDDGLIAPGVRVSGEDVIIGKTAPIAPDT----DEL 729

Query: 1174 KGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
                ++   ++     + +    ++KVL+++N E    +K+ +R T+ P+IGDKF+SRHG
Sbjct: 730  GQRTKLHSKRDASTPLRSTENGIVDKVLLTTNQEGLKFVKVRMRTTKIPQIGDKFASRHG 789

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGT 1293
            QKG IG+   QEDMPF   GI PD+I+NPH  PSRMT+  LIE    K   + G   + T
Sbjct: 790  QKGTIGITYRQEDMPFTAEGITPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDAT 849

Query: 1294 AFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKH 1345
             F    +  V   L  HGY  +G ++ Y+G TG  L A ++ GP YYQ+L+H
Sbjct: 850  PFTDVTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLRAQVFFGPTYYQRLRH 901



 Score =  116 bits (291), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 56/150 (37%), Positives = 94/150 (62%), Gaps = 3/150 (2%)

Query: 186 FDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINSQ 244
           F+I   ++  T+TN L  ++ TGNW+ ++   + + GV+QVL+R ++ S L  + R N+ 
Sbjct: 237 FNIALGVKSTTLTNGLKYSLATGNWSEQKKAAQGKAGVSQVLNRYTFASTLSHLRRTNTP 296

Query: 245 FEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNI 304
             +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT  +  + +++ M   
Sbjct: 297 LGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGSPGEPIIEFMVQR 356

Query: 305 GIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            +E +  +  E   SP +  VFVNG+  G+
Sbjct: 357 NMEVLEEY--EPTRSPNITKVFVNGVWVGV 384



 Score = 90.5 bits (223), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 543 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 588

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 589 FDERMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 628



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 40/77 (51%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           ARD +    + HI         KA +L  M+ RM+         DDRD++G KRL+LAG 
Sbjct: 147 ARDIMQKELLPHISQSEGSETRKAFFLGYMVHRMLQVALGRREPDDRDHFGKKRLDLAGP 206

Query: 516 LLSLMFEDVFKRFNSEL 532
           L++ +F  +F R   ++
Sbjct: 207 LMASLFRSLFNRLTKDV 223


>gi|300394734|gb|ADK11905.1| DNA-directed RNA polymerase II subunit two, partial [Porphyrellus
            porphyrosporus]
          Length = 689

 Score =  214 bits (545), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 105/263 (39%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 350  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKF 409

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 410  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEF 469

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 470  EKPTRDNTLRMKHGTYDKLEDDGLIAPGTNVKGEDIIIGKTAPIPPDSEELGQRTRTHTR 529

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 530  RDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRATRIPQIGDKFASRHGQKGTIGITY 589

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   G+ PD+I+NPH +
Sbjct: 590  RQEDMPFTAEGVVPDLIINPHAI 612



 Score =  152 bits (384), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 84/227 (37%), Positives = 125/227 (55%), Gaps = 11/227 (4%)

Query: 1124 LRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESGICPDIIMNPHGLKG 1175
            L +  +P   +    +HG        G+I  G  V+ ED+   ++   P    +   L  
Sbjct: 466  LEEFEKPTRDNTLRMKHGTYDKLEDDGLIAPGTNVKGEDIIIGKTAPIPP---DSEELGQ 522

Query: 1176 CDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1235
              R    ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQK
Sbjct: 523  RTRTHTRRDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRATRIPQIGDKFASRHGQK 582

Query: 1236 GVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAF 1295
            G IG+   QEDMPF   G+ PD+I+NPH  PSRMT+G L+E L  K   + GN  + T F
Sbjct: 583  GTIGITYRQEDMPFTAEGVVPDLIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPF 642

Query: 1296 GGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQK 1342
                +  V   L + GY+ +G ++ Y G TG+ L+A IY GP YYQ+
Sbjct: 643  TDLTVESVSTFLRQKGYHSRGLEVMYHGHTGKKLQAQIYLGPTYYQR 689



 Score =  110 bits (276), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 92/151 (60%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 43  EFNLSLAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT 102

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM  I+  +    +++ +  
Sbjct: 103 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEE 162

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E  ++      S+P    VFVNG+  G+
Sbjct: 163 WGLE--SLEENAHSSTPCTK-VFVNGVWMGV 190



 Score = 92.4 bits (228), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/176 (34%), Positives = 90/176 (51%), Gaps = 22/176 (12%)

Query: 707 NEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQA 766
           N+G+    A  ++GI     TH EI P  +LGVCA I              +P+P HNQ+
Sbjct: 314 NDGDFDPAARLKAGINAHTWTHCEIHPSMILGVCASI--------------IPFPDHNQS 359

Query: 767 PRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
           PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 360 PRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAI 419

Query: 827 SPGGAEELTARESCHEVLKIISFSISVAVFDSVWLG-----DVKQGVHQLSEEKEP 877
               A    +  +  + + +   SI   +F S++       + K GV QL E ++P
Sbjct: 420 V---AILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKP 472


>gi|55583694|gb|AAV53366.1| RNA polymerase II second largest subunit [Marasmius alliaceus]
          Length = 705

 Score =  214 bits (545), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 349  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKF 408

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 409  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSVDRGLFRSIYYRSYMDLEKKSGIQQLEEF 468

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  ++ DG++APG  +    +++ K+ P    S        T   
Sbjct: 469  EKPTRDNTLRMKHGTYDKIEDDGLIAPGTGVRGEDIIIGKTAPIPPDSEELGQRTRTHTR 528

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 529  RDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRSTRVPQIGDKFASRHGQKGTIGITY 588

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 589  RQEDMPFTAEGIVPDIIINPHAI 611



 Score =  180 bits (457), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 98/243 (40%), Positives = 137/243 (56%), Gaps = 11/243 (4%)

Query: 1124 LRQTRRPEIGDKFSSRHGQKGVI---GLI-----VEQEDMPFNESGICPDIIMNPHGLKG 1175
            L +  +P   +    +HG    I   GLI     V  ED+   ++   P    +   L  
Sbjct: 465  LEEFEKPTRDNTLRMKHGTYDKIEDDGLIAPGTGVRGEDIIIGKTAPIPP---DSEELGQ 521

Query: 1176 CDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1235
              R    ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQK
Sbjct: 522  RTRTHTRRDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRSTRVPQIGDKFASRHGQK 581

Query: 1236 GVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAF 1295
            G IG+   QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F
Sbjct: 582  GTIGITYRQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPF 641

Query: 1296 GGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARS 1355
                +  V   L + GY  +G ++ + G TG  L+A +Y GP YYQ+LKHMV DKIH+R+
Sbjct: 642  TDLTVESVSMFLRQKGYQSRGLEVMFHGHTGRKLQAQVYLGPTYYQRLKHMVDDKIHSRA 701

Query: 1356 RGP 1358
            RGP
Sbjct: 702  RGP 704



 Score =  113 bits (282), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 93/151 (61%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 43  EFNLTAAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT 102

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM+ I+  +    +++ +  
Sbjct: 103 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSYSAPVIEFLEE 162

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E  ++      S+P    VFVNG+  G+
Sbjct: 163 WGLE--SLEENAHSSTPTTK-VFVNGVWMGV 190



 Score = 90.5 bits (223), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 48/120 (40%), Positives = 66/120 (55%), Gaps = 14/120 (11%)

Query: 707 NEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQA 766
           N+G     A  ++GI     TH EI P  +LG+CA I              +P+P HNQ+
Sbjct: 313 NDGEFDPAARLKAGINAHTWTHCEIHPSMILGICASI--------------IPFPDHNQS 358

Query: 767 PRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
           PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 359 PRNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAI 418


>gi|47156741|gb|AAT12267.1| RNA polymerase II second largest subunit [Diapensia lapponica]
          Length = 541

 Score =  214 bits (545), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 111/270 (41%), Positives = 166/270 (61%), Gaps = 19/270 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 203  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVITRAMEHLHF 262

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NAT+A+  YSGY+ ED+LIMN++S+DRGF R L +R+ +           ++ 
Sbjct: 263  RQLPAGINATVAIACYSGYNQEDSLIMNQSSIDRGFFRSLFFRSYR---------DEEKK 313

Query: 1034 LGPLLEADTRKPV------YRHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            +G L++ D   P        RH +   LD DG+  PG ++    V++ K+ P     A  
Sbjct: 314  MGTLVKEDFGCPNRDNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAPDDATG 373

Query: 1085 MATP-EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1143
              +    ++   S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQK
Sbjct: 374  QNSRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQK 433

Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G +G+   QEDMP+   GI PDII+NPH +
Sbjct: 434  GTVGMTYTQEDMPWTIEGITPDIIVNPHAI 463



 Score =  142 bits (359), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 67/157 (42%), Positives = 99/157 (63%)

Query: 1187 VSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQED 1246
             S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   QED
Sbjct: 385  TSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 444

Query: 1247 MPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEE 1306
            MP+   GI PDII+NPH  PSRMT+G+LIE + GK     G   + T F    + ++ + 
Sbjct: 445  MPWTIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTEVTVDNISKA 504

Query: 1307 LIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKL 1343
            L + GY  +G +  Y+G TG  L + I+ GP YYQ+L
Sbjct: 505  LHKCGYQMRGFETMYNGHTGRQLTSMIFLGPTYYQRL 541



 Score = 99.0 bits (245), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/141 (40%), Positives = 78/141 (55%), Gaps = 24/141 (17%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVS-----ESGIRPG-----VTTHLEIAPFTLLGVCA 741
           + D + +G IEY+D  E   + I+++      + I P        TH EI P  +LGVCA
Sbjct: 142 WHDLVGKGFIEYVDTEEEETTMISMTIKDLVSARINPDDALSETFTHCEIHPSLILGVCA 201

Query: 742 GIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYA 801
            I              +P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y 
Sbjct: 202 SI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYP 247

Query: 802 QRPMVESKTIRITNFHKLPAG 822
           Q+P+V ++ +   +F +LPAG
Sbjct: 248 QKPLVITRAMEHLHFRQLPAG 268



 Score = 50.4 bits (119), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 41/70 (58%), Gaps = 8/70 (11%)

Query: 268 SDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMFNGEELSS---PGVYL 324
           ++TPEG+ACGLVKNLALM +IT  +    +L+ +     E  +  N EE+S    P    
Sbjct: 1   AETPEGQACGLVKNLALMVYITVGSAAHPILEFL-----EEWSTENFEEISPAVIPQATK 55

Query: 325 VFVNGILAGI 334
           +FVNG   GI
Sbjct: 56  IFVNGSWVGI 65


>gi|261403646|ref|YP_003247870.1| DNA-directed RNA polymerase subunit B' [Methanocaldococcus vulcanius
            M7]
 gi|261370639|gb|ACX73388.1| DNA-directed RNA polymerase subunit B [Methanocaldococcus vulcanius
            M7]
          Length = 643

 Score =  214 bits (545), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 114/266 (42%), Positives = 161/266 (60%), Gaps = 7/266 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            G+ PYP HN APR T   AMGKQ++G    N + R+DT  + L Y Q P+V +K   I  
Sbjct: 142  GVAPYPEHNSAPRITMAAAMGKQSLGIPMSNIKWRLDTRGHYLHYPQVPIVRTKHQEILG 201

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F K PAGQN  +A+MSY GY++EDA+I NK+++DRG GR   +R      ++YP    DR
Sbjct: 202  FDKRPAGQNFVVAIMSYEGYNMEDAIIFNKSAIDRGLGRSTFFRTYDTCERRYPGGQMDR 261

Query: 1033 ILGPL--LEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPT--ISVSAISM-AT 1087
               P   +     +  YRH  L++DGIVA    +    V+V K+ P   +    I++   
Sbjct: 262  FEVPDKGVRGYRSEECYRH--LEEDGIVAVESHVKGGDVIVGKTSPPRFLEEHEITIQVK 319

Query: 1088 PEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
            P+ ++  +  +     Y++KV+++   E   L+K+ +R  R PE+GDKF+SRHGQKGVIG
Sbjct: 320  PQRRDSSIVVRHGEEGYVDKVILTETKEGNRLVKVKVRDLRVPELGDKFASRHGQKGVIG 379

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            L V QED+PF ESGI PDII+NPH +
Sbjct: 380  LTVPQEDLPFTESGIVPDIIINPHAI 405



 Score =  200 bits (508), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 98/178 (55%), Positives = 124/178 (69%)

Query: 1195 SYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGI 1254
             Y++KV+++   E   L+K+ +R  R PE+GDKF+SRHGQKGVIGL V QED+PF ESGI
Sbjct: 335  GYVDKVILTETKEGNRLVKVKVRDLRVPELGDKFASRHGQKGVIGLTVPQEDLPFTESGI 394

Query: 1255 CPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNY 1314
             PDII+NPH  PSRMTVG+L+E+L GK G +EG   +GT F G    D+++ L   G+  
Sbjct: 395  VPDIIINPHAIPSRMTVGQLLEMLGGKVGSLEGRRIDGTIFTGETEWDLRKALEALGFES 454

Query: 1315 QGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
             GK++ Y G TG+  E  IY G  YYQKL H+V  KIHARSRGP  VLTRQPT  R +
Sbjct: 455  HGKEVMYDGKTGKKFEVEIYIGVAYYQKLHHLVAGKIHARSRGPVQVLTRQPTEGRAR 512



 Score = 97.1 bits (240), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 56/132 (42%), Positives = 73/132 (55%), Gaps = 15/132 (11%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKR 751
           F D + EG IEYLD  E  +++IA+SE  +     THLEI P T+LG+ AG+        
Sbjct: 93  FSDLVKEGVIEYLDAEEEENAYIALSEEELTEK-HTHLEIDPLTILGIGAGV-------- 143

Query: 752 FHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTI 811
                  PYP HN APR T   AMGKQ++G    N + R+DT  + L Y Q P+V +K  
Sbjct: 144 ------APYPEHNSAPRITMAAAMGKQSLGIPMSNIKWRLDTRGHYLHYPQVPIVRTKHQ 197

Query: 812 RITNFHKLPAGK 823
            I  F K PAG+
Sbjct: 198 EILGFDKRPAGQ 209


>gi|94410944|gb|ABF18590.1| RNA polymerase II second largest subunit, partial [Kuehneromyces
            rostratus]
          Length = 669

 Score =  214 bits (545), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 107/263 (40%), Positives = 160/263 (60%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 347  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKF 406

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 407  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEF 466

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  E   R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 467  EKPTRENTLRLKHGTYDKLEDDGLIAPGTGVAGEDIIIGKTAPIPPDSEELGQRTRTHTR 526

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ +R TR P+ GDKF+SRHGQKG IG+  
Sbjct: 527  RDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRSTRIPQTGDKFASRHGQKGTIGITY 586

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 587  RQEDMPFTCEGIVPDIIINPHAI 609



 Score =  128 bits (322), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 63/143 (44%), Positives = 87/143 (60%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++NSE    +K+ +R TR P+ GDKF+SRHGQKG IG+  
Sbjct: 527  RDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRSTRIPQTGDKFASRHGQKGTIGITY 586

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 587  RQEDMPFTCEGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTELTVES 646

Query: 1303 VQEELIRHGYNYQGKDIFYSGIT 1325
            V   L + GY  +G +I Y G T
Sbjct: 647  VSTFLRQKGYQSRGLEIMYHGHT 669



 Score =  110 bits (274), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 92/151 (60%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 41  EFNLALAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT 100

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM  I+  +    +++ +  
Sbjct: 101 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMACISVGSLSAPVIEFLEE 160

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E  ++      ++P    VFVNG+  G+
Sbjct: 161 WGLE--SLEENAHSTTPCTK-VFVNGVWMGV 188



 Score = 86.7 bits (213), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/120 (39%), Positives = 64/120 (53%), Gaps = 14/120 (11%)

Query: 707 NEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQA 766
           N G     A  ++G      TH EI P  +LG+CA I              +P+P HNQ+
Sbjct: 311 NTGEFDPAARLKAGTPAHTWTHCEIHPSMILGICASI--------------IPFPDHNQS 356

Query: 767 PRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
           PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 357 PRNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAI 416


>gi|410610283|gb|AFV74910.1| RNA polymerase II second largest subunit, partial [Champereia
            manillana]
          Length = 482

 Score =  214 bits (545), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 110/270 (40%), Positives = 167/270 (61%), Gaps = 19/270 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 137  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 196

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L +R+ +           ++ 
Sbjct: 197  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR---------DEEKK 247

Query: 1034 LGPLLEADTRKPV------YRHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            +G L++ D  +P        RH +   LD DG+  PG ++    V++ K+ P     +  
Sbjct: 248  MGTLVKEDFGRPNRMDTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIAQDESQG 307

Query: 1085 MATPEYK-EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1143
             A+   K +   S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQK
Sbjct: 308  QASRYTKRDHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQK 367

Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G +G+   QEDMP+   GI PDII+NPH +
Sbjct: 368  GTVGMTYTQEDMPWTVEGITPDIIVNPHAI 397



 Score =  155 bits (393), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 74/164 (45%), Positives = 105/164 (64%)

Query: 1187 VSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQED 1246
             S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   QED
Sbjct: 319  TSLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 378

Query: 1247 MPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEE 1306
            MP+   GI PDII+NPH  PSRMT+G+LIE + GK     G   + T F    + ++ + 
Sbjct: 379  MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 438

Query: 1307 LIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDK 1350
            L + GY  +G +  Y+G TG  L A I+ GP YYQ+LKHMV DK
Sbjct: 439  LHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDK 482



 Score =  100 bits (248), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 55/141 (39%), Positives = 77/141 (54%), Gaps = 24/141 (17%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPG----------VTTHLEIAPFTLLGVCA 741
           + D + +G IEY+D  E   + I+++ + +               TH EI P  +LGVCA
Sbjct: 76  WHDLVAKGYIEYIDTEEEETTMISMTINDLVSARLNPEEAYSETYTHCEIHPSLILGVCA 135

Query: 742 GIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYA 801
            I              +P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y 
Sbjct: 136 SI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYP 181

Query: 802 QRPMVESKTIRITNFHKLPAG 822
           Q+P+V ++ +   +F +LPAG
Sbjct: 182 QKPLVTTRAMEHLHFRQLPAG 202


>gi|357120315|ref|XP_003561873.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
            [Brachypodium distachyon]
          Length = 1228

 Score =  214 bits (545), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 111/270 (41%), Positives = 167/270 (61%), Gaps = 19/270 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 756  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHF 815

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L +R+ +           ++ 
Sbjct: 816  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR---------DEEKK 866

Query: 1034 LGPLLEADTRKPV------YRHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            +G L++ +  +P        RH +   LD DG+  PG ++    V++ K+ P     A  
Sbjct: 867  MGTLVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIPQDDAQG 926

Query: 1085 MATPEYK-EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1143
             AT   K +   S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQK
Sbjct: 927  QATRYSKRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQK 986

Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G +G+   QEDMP+   GI PDII+NPH +
Sbjct: 987  GTVGMTYTQEDMPWTIEGITPDIIVNPHAI 1016



 Score =  181 bits (458), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 86/184 (46%), Positives = 119/184 (64%)

Query: 1187 VSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQED 1246
             S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   QED
Sbjct: 938  TSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 997

Query: 1247 MPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEE 1306
            MP+   GI PDII+NPH  PSRMT+G+LIE + GK     G   + T F    + ++ + 
Sbjct: 998  MPWTIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 1057

Query: 1307 LIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQP 1366
            L + GY  +G +  Y+G TG  L A I+ GP YYQ+LKHMV DKIH+R RGP  +LTRQP
Sbjct: 1058 LHKCGYQMRGFETMYNGHTGRKLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP 1117

Query: 1367 TGRR 1370
               R
Sbjct: 1118 AEGR 1121



 Score =  118 bits (296), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 63/146 (43%), Positives = 87/146 (59%), Gaps = 8/146 (5%)

Query: 192 MRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKV 251
           ++  TIT+ L  ++ TGNW        R GV+QVL+RL+Y S L  + R+NS   +  K+
Sbjct: 479 IKAKTITSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKL 538

Query: 252 SGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAM 311
           + PR L  S WGM+CP++TPEG+ACGLVKNLALM +IT  +    +L+ +   G E    
Sbjct: 539 AKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWGTE---- 594

Query: 312 FNGEELSS---PGVYLVFVNGILAGI 334
            N EE+S    P    +FVNG   GI
Sbjct: 595 -NFEEISPAVIPQAAKIFVNGCWVGI 619



 Score = 99.8 bits (247), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/141 (39%), Positives = 77/141 (54%), Gaps = 24/141 (17%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPG----------VTTHLEIAPFTLLGVCA 741
           + D + +G IEY+D  E   + I+++ + +               TH EI P  +LGVCA
Sbjct: 695 WHDLVAKGFIEYIDTEEEETTMISMTINDLVSARNNPQEAYSETYTHCEIHPSLILGVCA 754

Query: 742 GIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYA 801
            I              +P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y 
Sbjct: 755 SI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYP 800

Query: 802 QRPMVESKTIRITNFHKLPAG 822
           Q+P+V ++ +   +F +LPAG
Sbjct: 801 QKPLVTTRAMEHLHFRQLPAG 821



 Score = 55.1 bits (131), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 54/114 (47%), Gaps = 14/114 (12%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A++ L    + H+ V       KA Y   +I R+++        DDRD+YGNKRL+LAG 
Sbjct: 383 AKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLMCALGRRAEDDRDHYGNKRLDLAGP 442

Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYGN 555
           LL  +F  +F++   ++           K+ NL   +    + SG  + L  GN
Sbjct: 443 LLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGN 496



 Score = 50.1 bits (118), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 19/85 (22%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRS------------ 388
           + KP + E+   T    P   RLR+LTYSAP+ VD+ Y     RVV+             
Sbjct: 134 LSKPMMTEADGETATLFPKSARLRNLTYSAPLYVDVSY-----RVVKKGHDCEEVTETME 188

Query: 389 --DLVIGRMPIMLQSSKCVLRNKTE 411
              + IG++PIML+SS C L  ++E
Sbjct: 189 YPKVFIGKVPIMLRSSYCTLFQQSE 213



 Score = 42.0 bits (97), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 29/41 (70%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANI 154
           D W ++ ++ +EKGLV+  +DSFD FI   +++++  +A+I
Sbjct: 64  DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADI 104


>gi|68131890|gb|AAY85223.1| RNA polymerase II second largest subunit [Nelumbo nucifera]
          Length = 865

 Score =  214 bits (545), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 108/270 (40%), Positives = 167/270 (61%), Gaps = 19/270 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 605  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHF 664

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L +R+ +           ++ 
Sbjct: 665  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR---------DEEKK 715

Query: 1034 LGPLLEADTRKPV------YRHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            +G L++ D  +P        RH +   LD DG+  PG ++    V++ K+ P     +  
Sbjct: 716  MGTLVKEDFGRPSRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDDSQG 775

Query: 1085 MATP-EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1143
             ++    ++   S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQK
Sbjct: 776  QSSRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQK 835

Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G +G+   QEDMP+   GI PDII+NPH +
Sbjct: 836  GTVGMTYTQEDMPWTVEGITPDIIVNPHAI 865



 Score =  116 bits (291), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 62/146 (42%), Positives = 87/146 (59%), Gaps = 8/146 (5%)

Query: 192 MRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKV 251
           ++  TIT+ L  ++ TGNW        R GV+QVL+RL+Y S L  + R+NS   +  K+
Sbjct: 327 IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKL 386

Query: 252 SGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAM 311
           + PR L  S WGM+CP++TPEG+ACGLVKNLALM +IT  +    +L+ +     E  + 
Sbjct: 387 AKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFL-----EEWST 441

Query: 312 FNGEELSS---PGVYLVFVNGILAGI 334
            N EE+S    P    +FVNG   GI
Sbjct: 442 ENFEEISPAVIPQATKIFVNGCWVGI 467



 Score =  100 bits (248), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 62/172 (36%), Positives = 85/172 (49%), Gaps = 40/172 (23%)

Query: 677 RPTFLNMHQFLGFKRFD----------------DFLYEGKIEYLDVNEGNDSHIAVSESG 720
           RP F+   Q L  K+ D                D + +G IEY+D  E   + I+++ + 
Sbjct: 513 RPLFIVEKQRLLIKKKDIRALQQRESSEEGGWHDLVAKGFIEYVDTEEEETTMISMTIND 572

Query: 721 IRPG----------VTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNT 770
           +               TH EI P  +LGVCA I              +P+P HNQ+PRNT
Sbjct: 573 LVTARLNPEEAYSETYTHCEIHPSLILGVCASI--------------IPFPDHNQSPRNT 618

Query: 771 YQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAG 822
           YQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F +LPAG
Sbjct: 619 YQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG 670



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 37/78 (47%), Positives = 54/78 (69%)

Query: 1187 VSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQED 1246
             S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   QED
Sbjct: 787  TSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 846

Query: 1247 MPFNESGICPDIIMNPHG 1264
            MP+   GI PDII+NPH 
Sbjct: 847  MPWTVEGITPDIIVNPHA 864



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 14/114 (12%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A++ L    + H+ V       KA Y   +I R++L        DDRD+YGNKRL+LAG 
Sbjct: 231 AKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGP 290

Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYGN 555
           LL  +F  +F++   ++           K+ NL   +    + SG  + L  GN
Sbjct: 291 LLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGN 344


>gi|55583704|gb|AAV53371.1| RNA polymerase II second largest subunit [Strobilomyces floccopus]
          Length = 908

 Score =  214 bits (545), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 105/263 (39%), Positives = 160/263 (60%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 527  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKF 586

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED +IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 587  RELPAGQNAIVAILCYSGYNQEDFVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEF 646

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 647  EKPTRDTTLRMKHGTYDKLEDDGLIAPGTNVKGEDIIIGKTAPIPPDSEELGQRTRTHNR 706

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 707  RDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITY 766

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PD+++NPH +
Sbjct: 767  RQEDMPFTAEGIVPDLVINPHAI 789



 Score =  191 bits (484), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 91/193 (47%), Positives = 124/193 (64%)

Query: 1178 RITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV 1237
            R    ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG 
Sbjct: 702  RTHNRRDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGT 761

Query: 1238 IGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGG 1297
            IG+   QEDMPF   GI PD+++NPH  PSRMT+G L+E L  K   + GN  + T F  
Sbjct: 762  IGITYRQEDMPFTAEGIVPDLVINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTD 821

Query: 1298 TKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRG 1357
              +  V   L + GY  +G ++ Y G TG+ L+A IY GP YYQ+LKHMV DKIH+R+RG
Sbjct: 822  LTVESVSTFLRQKGYQSRGLEVMYHGHTGKKLQAQIYLGPTYYQRLKHMVDDKIHSRARG 881

Query: 1358 PRVVLTRQPTGRR 1370
            P  +LTRQP   R
Sbjct: 882  PVQILTRQPVEGR 894



 Score =  110 bits (276), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 92/151 (60%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKM-ERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 220 EFNLSLAVKHQTITNGLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNT 279

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM  I+  +    +++ +  
Sbjct: 280 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEE 339

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E  ++      S+P    VFVNG+  G+
Sbjct: 340 WGLE--SLEENAHSSTPCTK-VFVNGVWMGV 367



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 61/176 (34%), Positives = 90/176 (51%), Gaps = 22/176 (12%)

Query: 707 NEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQA 766
           N+G+    A  ++GI     TH EI P  +LGVCA I              +P+P HNQ+
Sbjct: 491 NDGDFDPAARLKAGINAHTWTHCEIHPSMILGVCASI--------------IPFPDHNQS 536

Query: 767 PRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
           PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 537 PRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAI 596

Query: 827 SPGGAEELTARESCHEVLKIISFSISVAVFDSVWLG-----DVKQGVHQLSEEKEP 877
               A    +  +  + + +   SI   +F S++       + K GV QL E ++P
Sbjct: 597 V---AILCYSGYNQEDFVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKP 649



 Score = 60.5 bits (145), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 58/114 (50%), Gaps = 14/114 (12%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A++ L    + H+ +       KA +   MI R++LA  +   LDDRD++G KRL+LAG 
Sbjct: 131 AQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAALERRELDDRDHFGKKRLDLAGP 190

Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYGN 555
           LL+ +F  +FK+   ++           KE NLS  V    + +G  + L  GN
Sbjct: 191 LLANLFRMLFKKLTKDVYRYLQKCVETHKEFNLSLAVKHQTITNGLKYSLATGN 244


>gi|300394694|gb|ADK11885.1| DNA-directed RNA polymerase II subunit two, partial [Coniophora
            marmorata]
          Length = 686

 Score =  214 bits (545), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 104/263 (39%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 351  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKF 410

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 411  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEF 470

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  ++ DG++APG  +    +++ K+ P    S        T   
Sbjct: 471  EKPTRDTTLRMKHGTYDKIEDDGLIAPGTGVSGEDIIIGKTAPIPPDSEELGQRTRTHTR 530

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 531  RDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITY 590

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PD+++NPH +
Sbjct: 591  RQEDMPFTAEGIVPDLVINPHAI 613



 Score =  142 bits (359), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 67/156 (42%), Positives = 96/156 (61%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 531  RDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITY 590

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PD+++NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 591  RQEDMPFTAEGIVPDLVINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVES 650

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPV 1338
            V   L + GY  +G ++ Y G TG  L+A +Y GP 
Sbjct: 651  VSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPT 686



 Score =  112 bits (279), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 58/151 (38%), Positives = 91/151 (60%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKM-ERQGVTQVLSRLSYISGLGMMTRINS 243
           +F+I   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 43  EFNISLAVKHQTITNGLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNT 102

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM+ I+  +    +++ +  
Sbjct: 103 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSFSAPVIEFLEE 162

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E +        SS     VFVNG+  G+
Sbjct: 163 WGLESL---EENAHSSTVCTKVFVNGVWMGV 190



 Score = 89.7 bits (221), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 46/109 (42%), Positives = 62/109 (56%), Gaps = 14/109 (12%)

Query: 718 ESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGK 777
           +SGI     TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGK
Sbjct: 326 KSGINAHTWTHCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGK 371

Query: 778 QAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
           QAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 372 QAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAI 420


>gi|83415469|gb|ABC17942.1| RNA polymerase II second largest subunit, partial [Basidiobolus
            ranarum]
          Length = 720

 Score =  214 bits (545), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 104/263 (39%), Positives = 159/263 (60%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DT+   L Y Q+P+  ++ +    F
Sbjct: 345  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTMANILYYPQKPLCTTRAMEYLRF 404

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED+LIMN+ S+DRG  R + YR+     K+      +  
Sbjct: 405  RELPAGQNAIVAILCYSGYNQEDSLIMNQTSIDRGLFRSIFYRSYMDQEKKVGMMVMEEF 464

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  E+  R     +  L+ DG++APG ++    +++ K+ P    S        T   
Sbjct: 465  EKPTRESTLRLKRGTYEKLEGDGLIAPGTRVSGDDIIIGKTAPIPPDSEELGQRTKTHNK 524

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++     + +    +++V++++N E    +K+ +R TR P++GDKF+SRHGQKG IG+  
Sbjct: 525  RDASTPLRSTENGIVDQVMLTTNQEGLKFVKVRVRSTRVPQMGDKFASRHGQKGTIGVTY 584

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPFN  GI PD+I+NPH +
Sbjct: 585  RQEDMPFNREGIVPDLIINPHAI 607



 Score =  188 bits (478), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 85/174 (48%), Positives = 117/174 (67%)

Query: 1197 LEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICP 1256
            +++V++++N E    +K+ +R TR P++GDKF+SRHGQKG IG+   QEDMPFN  GI P
Sbjct: 539  VDQVMLTTNQEGLKFVKVRVRSTRVPQMGDKFASRHGQKGTIGVTYRQEDMPFNREGIVP 598

Query: 1257 DIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQG 1316
            D+I+NPH  PSRMT+G ++E L  K   + GN  + T F    +  +   L  HGY  +G
Sbjct: 599  DLIINPHAIPSRMTIGHMVECLLSKVSTLSGNEGDATPFTEVTVEAISHALQEHGYQKRG 658

Query: 1317 KDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRR 1370
             ++ ++G TG  L A IY GP YYQ+LKHMV DKIH+R+RGP  +LTRQP   R
Sbjct: 659  FEVLFNGHTGRKLTAQIYFGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGR 712



 Score =  124 bits (312), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 121/229 (52%), Gaps = 10/229 (4%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++ +TITN L  ++ TGNW  ++  M+ R GV+QVL+R ++ S L  + R N+
Sbjct: 39  EFNLTLAVKSNTITNGLKYSLATGNWGDQKKAMQARAGVSQVLNRYTFASTLSHLRRCNT 98

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM++I+  N    +++++ +
Sbjct: 99  PIGRDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSYISVGNPSAPVVEVLAD 158

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHECRL 363
             +E +  F+   ++      +FVNG+  GI  H       E    F      +P    +
Sbjct: 159 WAMESLEQFSANNIAD--ATKIFVNGVWVGI--HRDPGNLIETMRRFRRRVDISPEVSIV 214

Query: 364 RDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKTEY 412
           RD+        +I +   + RV R   V+    I L+    V     EY
Sbjct: 215 RDIRDK-----EIRFYTDAGRVCRPLYVVENQRITLRKEHVVALQMREY 258



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 67/127 (52%), Gaps = 14/127 (11%)

Query: 700 KIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVP 759
           K+ Y+   E + +    S + +     TH EI P  +LG CA I              +P
Sbjct: 302 KLGYIPEREADIASRVKSSAALITHTWTHCEIHPSMILGTCASI--------------IP 347

Query: 760 YPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKL 819
           +P HNQ+PRNTYQ AMGKQAMG    N Q R+DT+   L Y Q+P+  ++ +    F +L
Sbjct: 348 FPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTMANILYYPQKPLCTTRAMEYLRFREL 407

Query: 820 PAGKCQI 826
           PAG+  I
Sbjct: 408 PAGQNAI 414


>gi|3002819|gb|AAC08937.1| RPB140 [Chloranthus spicatus]
          Length = 533

 Score =  214 bits (545), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 109/270 (40%), Positives = 166/270 (61%), Gaps = 19/270 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 186  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHF 245

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L +R+ +           ++ 
Sbjct: 246  RQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR---------DEEKK 296

Query: 1034 LGPLLEADTRKPV------YRHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            +G L++ D  +P        RH +   LD DG+  PG ++    V++ K+ P        
Sbjct: 297  MGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDETQG 356

Query: 1085 MATP-EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1143
             A+    ++   S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQK
Sbjct: 357  QASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRVPQIGDKFSSRHGQK 416

Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G +G+   QEDMP+   GI PDII+NPH +
Sbjct: 417  GTVGMTYTQEDMPWTVEGITPDIIVNPHAI 446



 Score =  162 bits (410), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 76/166 (45%), Positives = 107/166 (64%)

Query: 1187 VSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQED 1246
             S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   QED
Sbjct: 368  TSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRVPQIGDKFSSRHGQKGTVGMTYTQED 427

Query: 1247 MPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEE 1306
            MP+   GI PDII+NPH  PSRMT+G+LIE + GK     G   + T F    + ++ + 
Sbjct: 428  MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 487

Query: 1307 LIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIH 1352
            L + GY  +G +  Y+G TG  L A I+ GP YYQ+LKHMV DKIH
Sbjct: 488  LHKCGYQMRGFETMYNGHTGRKLTAMIFLGPTYYQRLKHMVDDKIH 533



 Score =  101 bits (251), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 63/171 (36%), Positives = 85/171 (49%), Gaps = 39/171 (22%)

Query: 677 RPTFLNMHQFLGFKRFD---------------DFLYEGKIEYLDVNEGNDSHIAVSESGI 721
           RP F+   Q L  K+ D               D + +G IEY+D  E   + I+++ S +
Sbjct: 95  RPLFIVEKQRLLIKKKDIRALQQRETQEEGWHDLVAKGFIEYVDTEEEETTMISMTISDL 154

Query: 722 RPG----------VTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTY 771
                          TH EI P  +LGVCA I              +P+P HNQ+PRNTY
Sbjct: 155 VSARLNPEEAYSETYTHCEIHPSLILGVCASI--------------IPFPDHNQSPRNTY 200

Query: 772 QCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAG 822
           Q AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F +LPAG
Sbjct: 201 QSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG 251


>gi|103001574|gb|ABF71513.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
            gobiense]
          Length = 709

 Score =  214 bits (545), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 106/264 (40%), Positives = 166/264 (62%), Gaps = 5/264 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQ+MG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 365  IIPFPDHNQSPRNTYQSAMGKQSMGVFLTNYDQRMDTMANILYYPQKPLATTRSMEFLKF 424

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR+     K+      ++ 
Sbjct: 425  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSVVEQF 484

Query: 1034 LGPLLEADTRKPVY-RHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAISMATPEY- 1090
              P + +DT K  +  +  LD DGIVAPG ++    +++ K+ P       +   T  + 
Sbjct: 485  EKP-MRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKLHV 543

Query: 1091 -KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             ++V    + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHGQKG IG+ 
Sbjct: 544  KRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGIT 603

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
              QEDMPF + GI PD+I+NPH +
Sbjct: 604  YRQEDMPFTKEGIVPDLIINPHAI 627



 Score =  154 bits (390), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 84/234 (35%), Positives = 130/234 (55%), Gaps = 13/234 (5%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESG-ICPDIIMNPHGL 1173
            ++ Q  +P   D    +HG        G++  G+ V  ED+   ++  I PD       L
Sbjct: 480  VVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPD----AEEL 535

Query: 1174 KGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
                ++   ++V    + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHG
Sbjct: 536  GQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHG 595

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGT 1293
            QKG IG+   QEDMPF + GI PD+I+NPH  PSRMT+  LIE    K   + G   + T
Sbjct: 596  QKGTIGITYRQEDMPFTKEGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDAT 655

Query: 1294 AFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMV 1347
             F    +  V + L  HGY  +G ++ Y+G TG  L A ++ GP YYQ+L+HMV
Sbjct: 656  PFTEVTVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMV 709



 Score =  114 bits (286), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 91/151 (60%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW   ++    + GV+QVL+R ++ S L  + R N+
Sbjct: 42  EFNLTLGVKSTTITNGLKYSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNT 101

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT     + +++ M  
Sbjct: 102 PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIEFMIQ 161

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
             +E +  +  E   SP    VFVNG+  G+
Sbjct: 162 RNMEVLEEY--EPQRSPNATKVFVNGVWVGV 190



 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/100 (42%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQ+MG    N
Sbjct: 349 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQSMGVFLTN 394

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 395 YDQRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 434


>gi|400592641|gb|EJP60759.1| DNA-dependent RNA polymerase II beta subunit [Beauveria bassiana
            ARSEF 2860]
          Length = 1261

 Score =  214 bits (545), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 104/264 (39%), Positives = 165/264 (62%), Gaps = 5/264 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 790  IIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSMEFLKF 849

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L +R+     K+      +  
Sbjct: 850  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYSDQEKKVGLNYTEIF 909

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMP----TISVSAISMATPE 1089
              P  ++  R     +  LD+DGIVAPG ++    +++ K+ P    T  + A + A  +
Sbjct: 910  EKPFHQSTLRMKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAPIDPETQDLGARTTAH-Q 968

Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             +++    + +    +++V+V+ N+++   +K+ +R T+ P+IGDKF+SRHGQKG IG+ 
Sbjct: 969  RRDISTPLRSTENGIVDQVIVTVNADNVKYVKVRVRTTKIPQIGDKFASRHGQKGTIGVT 1028

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
              QEDMPF   G+ PDII+NPH +
Sbjct: 1029 YRQEDMPFTREGVTPDIIINPHAI 1052



 Score =  187 bits (474), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 85/190 (44%), Positives = 125/190 (65%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            +++    + +    +++V+V+ N+++   +K+ +R T+ P+IGDKF+SRHGQKG IG+  
Sbjct: 970  RDISTPLRSTENGIVDQVIVTVNADNVKYVKVRVRTTKIPQIGDKFASRHGQKGTIGVTY 1029

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   G+ PDII+NPH  PSRMT+  LIE L  K   +EG   + T F    +  
Sbjct: 1030 RQEDMPFTREGVTPDIIINPHAIPSRMTIAHLIECLLSKVSTLEGMEGDATPFTDVTVDS 1089

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
            V + L +HGY  +G +I Y+G TG+ L A ++ GP YYQ+L+HMV DKIHAR+RGP  ++
Sbjct: 1090 VSDLLRKHGYQSRGFEIMYNGHTGKKLRAQVFFGPTYYQRLRHMVDDKIHARARGPVQIM 1149

Query: 1363 TRQPTGRRWK 1372
            TRQP   R +
Sbjct: 1150 TRQPVEGRAR 1159



 Score =  111 bits (278), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 91/151 (60%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMER-QGVTQVLSRLSYISGLGMMTRINS 243
            F++   ++  T++N L  ++ TGNW  ++  M    GV+QVL+R ++ S L  + R N+
Sbjct: 468 HFNLAVGVKPGTLSNGLKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNT 527

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNL+LM +++  +  + ++  M N
Sbjct: 528 PIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSPAEPLIDFMIN 587

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E I  +  E L  P    +FVNG   G+
Sbjct: 588 RGMEVIEEY--EPLRYPHATKIFVNGTWVGV 616



 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 76/165 (46%), Gaps = 44/165 (26%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGI------RPGVT------------------- 726
           ++  +  G +EYLD  E   S I ++   +      + GV                    
Sbjct: 709 WEGLIKAGAVEYLDAEEEETSMICMTPEDLELYRLQKAGVAVDDDHGDDLNKRLKTKTNP 768

Query: 727 -----THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMG 781
                TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG
Sbjct: 769 TTHMYTHCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMG 814

Query: 782 CIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
               N   R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 815 FFLTNYSRRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 859



 Score = 53.5 bits (127), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 42/77 (54%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           ARD L    + HI         KA ++  M+ +++         DDRD++G KRL+LAG 
Sbjct: 379 ARDILQKETLPHISQEAGSETRKAFFIGYMVHKLLQCALGRREPDDRDHFGKKRLDLAGP 438

Query: 516 LLSLMFEDVFKRFNSEL 532
           LL+ +F  + +R +SEL
Sbjct: 439 LLAKLFRGIMRRMHSEL 455


>gi|113957191|gb|ABI49106.1| RNA polymerase II second largest subunit [Diploschistes
            cinereocaesius]
          Length = 709

 Score =  214 bits (545), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 105/263 (39%), Positives = 159/263 (60%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 361  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDERMDTMANILYYPQKPLATTRSMEFLKF 420

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R L YR      K+      ++ 
Sbjct: 421  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYVEQEKRVGMSLVEQF 480

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAISMATPEY-- 1090
              PL     R     +  LD DG++APG ++    V++ K+ P       +   T  +  
Sbjct: 481  EKPLRSETLRLKHGTYEKLDDDGLIAPGVRVSGEDVIIGKTAPIAPDTDELGQRTKLHSK 540

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++     + +    ++KVL+++N E    +K+ +R T+ P+IGDKF+SRHGQKG IG+  
Sbjct: 541  RDASTPLRSTENGIVDKVLLTTNQEGLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITY 600

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PD+I+NPH +
Sbjct: 601  RQEDMPFTAEGITPDLIINPHAI 623



 Score =  158 bits (400), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 88/238 (36%), Positives = 129/238 (54%), Gaps = 13/238 (5%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESG-ICPDIIMNPHGL 1173
            L+ Q  +P   +    +HG        G+I  G+ V  ED+   ++  I PD       L
Sbjct: 476  LVEQFEKPLRSETLRLKHGTYEKLDDDGLIAPGVRVSGEDVIIGKTAPIAPDT----DEL 531

Query: 1174 KGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
                ++   ++     + +    ++KVL+++N E    +K+ +R T+ P+IGDKF+SRHG
Sbjct: 532  GQRTKLHSKRDASTPLRSTENGIVDKVLLTTNQEGLKFVKVRMRTTKIPQIGDKFASRHG 591

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGT 1293
            QKG IG+   QEDMPF   GI PD+I+NPH  PSRMT+  LIE    K   + G   + T
Sbjct: 592  QKGTIGITYRQEDMPFTAEGITPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDAT 651

Query: 1294 AFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKI 1351
             F    +  V   L  HGY  +G ++ Y+G TG  L A ++ GP YYQ+L+HMV DKI
Sbjct: 652  PFTDVTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLRAQVFFGPTYYQRLRHMVDDKI 709



 Score =  116 bits (290), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 56/150 (37%), Positives = 94/150 (62%), Gaps = 3/150 (2%)

Query: 186 FDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINSQ 244
           F+I   ++  T+TN L  ++ TGNW+ ++   + + GV+QVL+R ++ S L  + R N+ 
Sbjct: 39  FNIALGVKSTTLTNGLKYSLATGNWSEQKKAAQGKAGVSQVLNRYTFASTLSHLRRTNTP 98

Query: 245 FEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNI 304
             +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT  +  + +++ M   
Sbjct: 99  LGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGSPGEPIIEFMVQR 158

Query: 305 GIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            +E +  +  E   SP +  VFVNG+  G+
Sbjct: 159 NMEVLEEY--EPTRSPNITKVFVNGVWVGV 186



 Score = 90.1 bits (222), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 345 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 390

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 391 FDERMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 430


>gi|120561251|gb|ABM27010.1| RNA polymerase II second largest subunit, partial [Basidiobolus
            ranarum]
          Length = 883

 Score =  214 bits (545), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 104/263 (39%), Positives = 159/263 (60%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DT+   L Y Q+P+  ++ +    F
Sbjct: 539  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTMANILYYPQKPLCTTRAMEYLRF 598

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED+LIMN+ S+DRG  R + YR+     K+      +  
Sbjct: 599  RELPAGQNAIVAILCYSGYNQEDSLIMNQTSIDRGLFRSIFYRSYMDQEKKVGMMVMEEF 658

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  E+  R     +  L+ DG++APG ++    +++ K+ P    S        T   
Sbjct: 659  EKPTRESTLRLKHGTYEKLEGDGLIAPGTRVSGDDIIIGKTAPIPPDSEELGQRTKTHSK 718

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++     + +    +++V++++N E    +K+ +R TR P++GDKF+SRHGQKG IG+  
Sbjct: 719  RDASTPLRSTENGIVDQVMLTTNQEGLKFVKVRVRSTRVPQMGDKFASRHGQKGTIGVTY 778

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPFN  GI PD+I+NPH +
Sbjct: 779  RQEDMPFNNEGIVPDLIINPHAI 801



 Score =  161 bits (408), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 72/151 (47%), Positives = 100/151 (66%)

Query: 1197 LEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICP 1256
            +++V++++N E    +K+ +R TR P++GDKF+SRHGQKG IG+   QEDMPFN  GI P
Sbjct: 733  VDQVMLTTNQEGLKFVKVRVRSTRVPQMGDKFASRHGQKGTIGVTYRQEDMPFNNEGIVP 792

Query: 1257 DIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQG 1316
            D+I+NPH  PSRMT+G ++E L  K   + GN  + T F    +  +   L  HGY  +G
Sbjct: 793  DLIINPHAIPSRMTIGHMVECLLSKVSTLSGNEGDATPFTEVTVEAISHALQEHGYQKRG 852

Query: 1317 KDIFYSGITGEALEAYIYSGPVYYQKLKHMV 1347
             ++ Y+G TG  L A IY GP YYQ+LKHMV
Sbjct: 853  FEVLYNGHTGRKLTAQIYFGPTYYQRLKHMV 883



 Score =  125 bits (313), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 121/229 (52%), Gaps = 10/229 (4%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++ +TITN L  ++ TGNW  ++  M+ R GV+QVL+R ++ S L  + R N+
Sbjct: 233 EFNLTLAVKSNTITNGLKYSLATGNWGDQKKAMQARAGVSQVLNRYTFASTLSHLRRCNT 292

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM++I+  N    +++++ +
Sbjct: 293 PIGRDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSYISVGNPSAPVVEVLAD 352

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHECRL 363
             +E +  F+   ++      +FVNG+  GI  H       E    F      +P    +
Sbjct: 353 WAMESLEQFSANNIAD--ATKIFVNGVWVGI--HRDPGNLIETMRRFRRRVDISPEVSIV 408

Query: 364 RDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKTEY 412
           RD+        +I +   + RV R   V+    I L+    V     EY
Sbjct: 409 RDIRDK-----EIRFYTDAGRVCRPLYVVENQRITLRKEHVVALQMREY 452



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 74/164 (45%), Gaps = 43/164 (26%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAV-----------------------------SESGIR 722
           + D +  G +EYLD  E   S I +                             S + + 
Sbjct: 459 WQDLVVNGIVEYLDAEEEEVSMICMTPEDLSESRMYSKLGYIPEREVDVASRVKSSAALI 518

Query: 723 PGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGC 782
               TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG 
Sbjct: 519 THTWTHCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGI 564

Query: 783 IGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              N Q R+DT+   L Y Q+P+  ++ +    F +LPAG+  I
Sbjct: 565 YVTNYQLRMDTMANILYYPQKPLCTTRAMEYLRFRELPAGQNAI 608



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 14/114 (12%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A + L    + H+         KA +   M+ R++LA  +   LDDRD+YG KR++LAG 
Sbjct: 144 ATEILQKEFLPHVATEAHTETKKAYFFGYMVHRLLLAALERRDLDDRDHYGKKRMDLAGP 203

Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYGN 555
           LL+++F  +F++   ++           +E NL+  V    + +G  + L  GN
Sbjct: 204 LLAMLFRMLFRKLTKDVGRYLQKCIDSNREFNLTLAVKSNTITNGLKYSLATGN 257


>gi|94410922|gb|ABF18580.1| RNA polymerase II second largest subunit, partial [Hygrophorus
            auratocephalus]
          Length = 701

 Score =  214 bits (545), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 107/263 (40%), Positives = 162/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 357  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKF 416

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQN  +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 417  RELPAGQNTIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEF 476

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS-AISMATPEY-- 1090
              P  E   R     +  L+ DG++APG  +    +++ K+ P    S  +   T  +  
Sbjct: 477  EKPTRENTLRMKHGTYDKLEDDGLIAPGTGVRGEDIIIGKTAPIPPDSEELGQRTRSHTR 536

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 537  RDVSTPMKSTESGIVDQVLITTNSEGQKFVKVRVRSTRVPQIGDKFASRHGQKGTIGITY 596

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 597  RQEDMPFTAEGIVPDIIINPHAI 619



 Score =  163 bits (413), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 78/165 (47%), Positives = 105/165 (63%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 537  RDVSTPMKSTESGIVDQVLITTNSEGQKFVKVRVRSTRVPQIGDKFASRHGQKGTIGITY 596

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDII+NPH  PSRMT+G LIE L  K   + GN  + T F    +  
Sbjct: 597  RQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLIECLLSKVATLIGNEGDATPFTDLTVES 656

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMV 1347
            V   L + GY  +G ++ Y G TG  L+A +Y GP YYQ+LKHMV
Sbjct: 657  VSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMV 701



 Score =  112 bits (279), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 58/151 (38%), Positives = 92/151 (60%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 40  EFNLALAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT 99

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM  I+  +    +++ +  
Sbjct: 100 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMACISVGSYSAPIIEFLEE 159

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E  ++      S+P    VFVNG+  GI
Sbjct: 160 WGME--SLEENAHSSTPCTK-VFVNGVWMGI 187



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 103/221 (46%), Gaps = 51/221 (23%)

Query: 691 RFDDFLYEGKIEYLDVNEGNDSHIAVS----------ESGIRP---------------GV 725
           +++  + EG IE LD  E     I+++          +SG+ P               GV
Sbjct: 276 KWESLVKEGIIELLDAEEEETVMISMTPEDLENSRLQQSGVDPHSNDSDFDPAQRLKAGV 335

Query: 726 T----THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMG 781
                TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG
Sbjct: 336 NAHTWTHCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMG 381

Query: 782 CIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQISPGGAEELTARESCH 841
               N   R+DT+   L Y Q+P+  ++++    F +LPAG+  I    A    +  +  
Sbjct: 382 IYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNTIV---AILCYSGYNQE 438

Query: 842 EVLKIISFSISVAVFDSVWLG-----DVKQGVHQLSEEKEP 877
           + + +   SI   +F S++       + K GV QL E ++P
Sbjct: 439 DSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKP 479


>gi|68131916|gb|AAY85236.1| RNA polymerase II second largest subunit [Vitis piasezkii]
          Length = 951

 Score =  214 bits (545), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 109/270 (40%), Positives = 167/270 (61%), Gaps = 19/270 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 613  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHF 672

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L +R+ +           ++ 
Sbjct: 673  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR---------DEEKK 723

Query: 1034 LGPLLEADTRKPV------YRHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            +G L++ D  +P        RH +   LD DG+  PG ++    V++ K+ P     +  
Sbjct: 724  MGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDSQG 783

Query: 1085 MATP-EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1143
             A+    ++   S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQK
Sbjct: 784  QASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQK 843

Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G +G+   QEDMP+   GI PDII+NPH +
Sbjct: 844  GTVGMTYTQEDMPWTVEGITPDIIVNPHAI 873



 Score =  144 bits (362), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 68/157 (43%), Positives = 99/157 (63%)

Query: 1187 VSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQED 1246
             S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   QED
Sbjct: 795  TSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 854

Query: 1247 MPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEE 1306
            MP+   GI PDII+NPH  PSRMT+G+LIE + GK     G   + T F    + ++ + 
Sbjct: 855  MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 914

Query: 1307 LIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKL 1343
            L + GY  +G +  Y+G TG  L A I+ GP YYQ+L
Sbjct: 915  LHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 951



 Score =  115 bits (289), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 62/146 (42%), Positives = 87/146 (59%), Gaps = 8/146 (5%)

Query: 192 MRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKV 251
           ++  TIT+ L  ++ TGNW        R GV+QVL+RL+Y S L  + R+NS   +  K+
Sbjct: 335 IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKL 394

Query: 252 SGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAM 311
           + PR L  S WGM+CP++TPEG+ACGLVKNLALM +IT  +    +L+ +     E  + 
Sbjct: 395 AKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFL-----EEWST 449

Query: 312 FNGEELSS---PGVYLVFVNGILAGI 334
            N EE+S    P    +FVNG   GI
Sbjct: 450 ENFEEISPAVIPQSTKIFVNGCWVGI 475



 Score = 99.4 bits (246), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/172 (36%), Positives = 85/172 (49%), Gaps = 40/172 (23%)

Query: 677 RPTFLNMHQFLGFKRFD----------------DFLYEGKIEYLDVNEGNDSHIAVSESG 720
           RP F+   Q L  K+ D                D + +G IEY+D  E   + I+++ + 
Sbjct: 521 RPLFIVEKQRLLIKKRDIRALQLRESPEDGGWHDLVSKGFIEYVDTEEEETTMISMTIND 580

Query: 721 IRPG----------VTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNT 770
           +               TH EI P  +LGVCA I              +P+P HNQ+PRNT
Sbjct: 581 LISARLNPEEAYSETYTHCEIHPSLILGVCASI--------------IPFPDHNQSPRNT 626

Query: 771 YQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAG 822
           YQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F +LPAG
Sbjct: 627 YQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG 678



 Score = 54.7 bits (130), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 14/114 (12%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A++ L    + H+ V       KA Y   +I R++L        DDRD+YGNKRL+LAG 
Sbjct: 239 AKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP 298

Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYGN 555
           LL  +F  +F++   ++           K+ NL   +    + SG  + L  GN
Sbjct: 299 LLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGN 352



 Score = 42.7 bits (99), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 19/68 (27%)

Query: 358 PHECRLRDLTYSAPITVDIEYTRGSQRVVR--------------SDLVIGRMPIMLQSSK 403
           P   RLR+LTYSAP+ VD+     ++R+++              + + IG++PIML+SS 
Sbjct: 7   PKAARLRNLTYSAPLYVDV-----TKRIIKKGHDLEEVTETQEFTKVFIGKVPIMLRSSY 61

Query: 404 CVLRNKTE 411
           C +   +E
Sbjct: 62  CTVYQNSE 69


>gi|300394682|gb|ADK11879.1| DNA-directed RNA polymerase II subunit two, partial [Boletus edulis]
          Length = 673

 Score =  214 bits (545), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 105/263 (39%), Positives = 160/263 (60%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 350  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKF 409

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR    + K+   Q  +  
Sbjct: 410  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRGYMDLEKKSGIQQLEEF 469

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 470  EKPTRDTTLRMKHGTYDKLEDDGLIAPGTNVRGEDIIIGKTAPIPPDSEELGQRTRTHTR 529

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 530  RDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITY 589

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PD+++NPH +
Sbjct: 590  RQEDMPFTAEGIVPDLVINPHAI 612



 Score =  132 bits (332), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 62/144 (43%), Positives = 89/144 (61%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 530  RDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITY 589

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PD+++NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 590  RQEDMPFTAEGIVPDLVINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVES 649

Query: 1303 VQEELIRHGYNYQGKDIFYSGITG 1326
            V   L + GY  +G ++ Y G TG
Sbjct: 650  VSTFLRQKGYQSRGLEVMYHGYTG 673



 Score =  109 bits (273), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 92/151 (60%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKM-ERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 43  EFNLSLAVKHQTITNGLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNT 102

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM  I+  +    +++ +  
Sbjct: 103 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEE 162

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E  ++      ++P    VFVNG+  G+
Sbjct: 163 WGLE--SLEENAHSATPCTK-VFVNGVWMGV 190



 Score = 90.9 bits (224), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 89/176 (50%), Gaps = 22/176 (12%)

Query: 707 NEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQA 766
           N+G     A  ++GI     TH EI P  +LGVCA I              +P+P HNQ+
Sbjct: 314 NDGEFDPAARLKAGINAHTWTHCEIHPSMILGVCASI--------------IPFPDHNQS 359

Query: 767 PRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
           PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 360 PRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAI 419

Query: 827 SPGGAEELTARESCHEVLKIISFSISVAVFDSVWLG-----DVKQGVHQLSEEKEP 877
               A    +  +  + + +   SI   +F S++       + K G+ QL E ++P
Sbjct: 420 V---AILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRGYMDLEKKSGIQQLEEFEKP 472


>gi|67810752|gb|AAY82003.1| RNA polymerase II second largest subunit [Psilotum nudum]
          Length = 614

 Score =  214 bits (545), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 106/262 (40%), Positives = 160/262 (61%), Gaps = 3/262 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 208  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLFYPQKPLVTTRAMEHLHF 267

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R + YR+ +    +      +  
Sbjct: 268  RQLPAGINAVVAIACYSGYNQEDSVIMNQSSIDRGFFRSIFYRSYRDEEXKQGTLVKEEF 327

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEY--K 1091
              P  E  T      +  LD DG+  PG ++    V++ K+ P +S          Y  +
Sbjct: 328  ERPNRETXTNMRHGSYDKLDDDGLTPPGTRVSGEDVIIGKTTP-LSQDDTGNQAQRYSKR 386

Query: 1092 EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVE 1151
            +     + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   
Sbjct: 387  DQSTCLRXSESGMIDQVLLTTNADGLRFVKIRVRSIRVPQIGDKFSSRHGQKGTVGMTYT 446

Query: 1152 QEDMPFNESGICPDIIMNPHGL 1173
            QEDMP+ + GI PDII+NPH +
Sbjct: 447  QEDMPWTQEGISPDIIVNPHAI 468



 Score =  178 bits (452), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 83/174 (47%), Positives = 115/174 (66%)

Query: 1197 LEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICP 1256
            +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   QEDMP+ + GI P
Sbjct: 400  IDQVLLTTNADGLRFVKIRVRSIRVPQIGDKFSSRHGQKGTVGMTYTQEDMPWTQEGISP 459

Query: 1257 DIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQG 1316
            DII+NPH  PSRMT+G+LIE + GK     G   + T F    +  + + L + GY  +G
Sbjct: 460  DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGREGDATPFTDVTVDSISKALHKCGYQMRG 519

Query: 1317 KDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRR 1370
             +  Y+G T   L A I+ GP YYQ+LKHMV DKIH+R RGP  +LTRQP   R
Sbjct: 520  FETMYNGHTXRRLNAMIFIGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGR 573



 Score =  101 bits (252), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 56/139 (40%), Positives = 75/139 (53%), Gaps = 24/139 (17%)

Query: 694 DFLYEGKIEYLDVNEGNDSHIAVSESGIRPG----------VTTHLEIAPFTLLGVCAGI 743
           D + +G IEY+D  E   + I+++ S                 TH EI P  +LGVCA I
Sbjct: 149 DLVAKGFIEYVDTEEEETTMISMNXSDXEAARDHPEEAYSDTYTHCEIHPSMILGVCASI 208

Query: 744 ELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQR 803
                         +P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+
Sbjct: 209 --------------IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLFYPQK 254

Query: 804 PMVESKTIRITNFHKLPAG 822
           P+V ++ +   +F +LPAG
Sbjct: 255 PLVTTRAMEHLHFRQLPAG 273



 Score = 68.9 bits (167), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/76 (46%), Positives = 48/76 (63%), Gaps = 8/76 (10%)

Query: 262 WGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMFNGEELSS-- 319
           WGM+CP++TPEG+ACGLVKNLALM++IT  +    +L+ +     E  +  N EE+S   
Sbjct: 1   WGMMCPAETPEGQACGLVKNLALMSYITVGSAANPILEFL-----EEWSTENFEEISPAV 55

Query: 320 -PGVYLVFVNGILAGI 334
            P    +FVNG   GI
Sbjct: 56  IPQATKIFVNGCWVGI 71


>gi|56694336|gb|AAW22908.1| RNA polymerase II second largest subunit [Dacrydium cupressinum]
          Length = 498

 Score =  214 bits (545), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 107/261 (40%), Positives = 161/261 (61%), Gaps = 1/261 (0%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 163  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHF 222

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L +R+ +   K+      +  
Sbjct: 223  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKRMGTLVKEEF 282

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMP-TISVSAISMATPEYKE 1092
              P  E  T      +  LD DG+  PG ++    V++ K+ P +   S   ++    ++
Sbjct: 283  GRPNRENTTGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPVSQEESGNQISKYTRRD 342

Query: 1093 VPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQ 1152
               S + S    +++VL+++N +    +K+ +R  R P+IGDKFSSRHGQKG +G+   Q
Sbjct: 343  QSTSLRHSESGMVDQVLLTTNQDGLRFVKVRMRSVRVPQIGDKFSSRHGQKGTVGMTYTQ 402

Query: 1153 EDMPFNESGICPDIIMNPHGL 1173
            EDMP+   GI PDII+NPH +
Sbjct: 403  EDMPWTVEGITPDIIVNPHAI 423



 Score =  140 bits (352), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 68/166 (40%), Positives = 102/166 (61%), Gaps = 2/166 (1%)

Query: 1177 DRITEY--KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQ 1234
            ++I++Y  ++   S + S    +++VL+++N +    +K+ +R  R P+IGDKFSSRHGQ
Sbjct: 333  NQISKYTRRDQSTSLRHSESGMVDQVLLTTNQDGLRFVKVRMRSVRVPQIGDKFSSRHGQ 392

Query: 1235 KGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTA 1294
            KG +G+   QEDMP+   GI PDII+NPH  PSRMT+G+LIE + GK     G   + T 
Sbjct: 393  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 452

Query: 1295 FGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYY 1340
            F    +  + + L + GY  +G +  Y+G TG  L A I+ GP YY
Sbjct: 453  FTDVTVDSISKALHKCGYQMRGFETMYNGHTGRKLNAMIFLGPTYY 498



 Score =  101 bits (251), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 63/169 (37%), Positives = 86/169 (50%), Gaps = 37/169 (21%)

Query: 677 RPTFLNMHQFLGFKRFD-------------DFLYEGKIEYLDVNEGNDSHIAVSESGIRP 723
           RP F+   Q L  K+ D             D + +G IEY+D  E   + I+++ + +  
Sbjct: 74  RPLFVVKKQRLIIKKRDINELWQNPEDGWHDLITKGFIEYVDTXEEETTMISMTINDLVN 133

Query: 724 GVT----------THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQC 773
             T          TH EI P  +LGVCA I              +P+P HNQ+PRNTYQ 
Sbjct: 134 ARTNPEDAYSHTYTHCEIHPSLILGVCASI--------------IPFPDHNQSPRNTYQS 179

Query: 774 AMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAG 822
           AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F +LPAG
Sbjct: 180 AMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG 228


>gi|55584700|gb|AAV53581.1| RNA polymerase II second largest subunit [Peniophorella praetermissa]
          Length = 671

 Score =  214 bits (545), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 105/263 (39%), Positives = 160/263 (60%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 344  IIPFPDHNQSPRNTYQSAMGKQAMGIFLTNFLVRMDTMANILYYPQKPLATTRSMEYLKF 403

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+M YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 404  RELPAGQNAIVAIMCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDMEKKSGVQQLEEF 463

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  ++ DG++APG  +    +++ K+ P  + S        T   
Sbjct: 464  EKPTRDTTVRMKHGTYDKIEDDGLIAPGTGVRGEDIIIGKTAPLAADSEELGQRTRTHTR 523

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++N E    +K+ +R TR P+ GDKF+SRHGQKG IG+  
Sbjct: 524  RDVSTPLKSTESGMVDQVLLTTNHEGQKFVKVRVRSTRIPQTGDKFASRHGQKGTIGITY 583

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 584  RQEDMPFTAEGITPDIIINPHAI 606



 Score =  134 bits (337), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 65/148 (43%), Positives = 90/148 (60%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++N E    +K+ +R TR P+ GDKF+SRHGQKG IG+  
Sbjct: 524  RDVSTPLKSTESGMVDQVLLTTNHEGQKFVKVRVRSTRIPQTGDKFASRHGQKGTIGITY 583

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 584  RQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLSKVATLLGNEGDATPFTELTVES 643

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALE 1330
            V E L + GY  +G +I Y G TG  L+
Sbjct: 644  VSEYLRQKGYQSRGLEIMYHGHTGRKLQ 671



 Score =  108 bits (269), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 56/150 (37%), Positives = 89/150 (59%), Gaps = 4/150 (2%)

Query: 186 FDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQ 244
           F+I   ++ +TITN L  ++ TGNW   ++    + GV+QVL+R +Y S L  + R N+ 
Sbjct: 40  FNIALAVKHNTITNGLKYSLATGNWGDQKKSASSKAGVSQVLNRYTYASTLSHLRRCNTP 99

Query: 245 FEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNI 304
             +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM  I+  +    +++ +   
Sbjct: 100 LGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMATISVGSLSAPVIEFLEEW 159

Query: 305 GIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
           G+E +        SS  +  V VNG+  G+
Sbjct: 160 GLEPL---EENAHSSTPLTKVXVNGVWMGV 186



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/216 (30%), Positives = 96/216 (44%), Gaps = 47/216 (21%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVT------------------------- 726
           +D  +  G IEYLD  E     I +S   +   V                          
Sbjct: 268 WDSLVKGGVIEYLDAEEEETVMICMSPEELDDNVQEQPSINDPDYDPSARLKGPRVRHNW 327

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 328 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGIFLTN 373

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQISPGGAEELTARESCHEVLKI 846
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I    A    +  +  + + +
Sbjct: 374 FLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIV---AIMCYSGYNQEDSVIM 430

Query: 847 ISFSISVAVFDSVWLG-----DVKQGVHQLSEEKEP 877
              SI   +F S++       + K GV QL E ++P
Sbjct: 431 NQSSIDRGLFRSIYYRSYMDMEKKSGVQQLEEFEKP 466


>gi|52699882|gb|AAU87002.1| DNA-dependent RNA polymerase II second largest subunit [Sporastatia
            testudinea]
          Length = 700

 Score =  214 bits (545), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 109/267 (40%), Positives = 167/267 (62%), Gaps = 11/267 (4%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 350  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDQRMDTMANILYYPQKPLATTRSMEFLKF 409

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR+     K+      ++ 
Sbjct: 410  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRVGMSIVEQF 469

Query: 1034 LGPLLEADTRKPVY-RHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKE 1092
              P + +DT K  +  +  LD DGIVAPG ++    +++ K+ P I+  A  +   +  +
Sbjct: 470  EKP-MRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIVIGKTAP-IAPDAEELG--QRTK 525

Query: 1093 VPVSYKGSVP------SYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVI 1146
            + V    S P        +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHGQKG I
Sbjct: 526  LHVKRDASTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTI 585

Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G+   QEDMPF   G+ PD+I+NPH +
Sbjct: 586  GITYRQEDMPFTSEGVVPDLIINPHAI 612



 Score =  159 bits (403), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 88/246 (35%), Positives = 133/246 (54%), Gaps = 25/246 (10%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESG-ICPDIIMNPHGL 1173
            ++ Q  +P   D    +HG        G++  G+ V  ED+   ++  I PD        
Sbjct: 465  IVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIVIGKTAPIAPD-------- 516

Query: 1174 KGCDRITEYKEVPVSYKGSVP------SYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDK 1227
               + + +  ++ V    S P        +++VL+++N+E    +K+ +R T+ P+IGDK
Sbjct: 517  --AEELGQRTKLHVKRDASTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDK 574

Query: 1228 FSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEG 1287
            F+SRHGQKG IG+   QEDMPF   G+ PD+I+NPH  PSRMT+  LIE    K   + G
Sbjct: 575  FASRHGQKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRG 634

Query: 1288 NYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMV 1347
               + T F    +  V + L  HGY  +G ++ Y+G TG  L A ++ GP YYQ+L+HMV
Sbjct: 635  FEGDATPFTEVTVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMV 694

Query: 1348 QDKIHA 1353
             DKI A
Sbjct: 695  DDKIXA 700



 Score =  111 bits (278), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 52/151 (34%), Positives = 91/151 (60%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  T+TN L  ++ TGNW   ++    + GV+QVL+R ++ S L  + R N+
Sbjct: 27  EFNLTLGIKASTLTNGLKYSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNT 86

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM ++T  +  + ++  M  
Sbjct: 87  PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYVTVGSPSEPIVDFMIQ 146

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
             +E +  +  E   SP    +F+NG+  G+
Sbjct: 147 RNMEVLEEY--EPQRSPNATKIFINGVWVGV 175



 Score = 90.5 bits (223), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 334 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 379

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 380 YDQRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 419


>gi|46277257|gb|AAS86819.1| RNA polymerase II second largest subunit, partial [Dioscorea
            sansibarensis]
          Length = 572

 Score =  214 bits (545), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 110/270 (40%), Positives = 167/270 (61%), Gaps = 19/270 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 200  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHF 259

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L +R+ +           ++ 
Sbjct: 260  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR---------DEEKK 310

Query: 1034 LGPLLEADTRKPV------YRHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            +G L++ D  KP        RH +   LD DG+  PG ++    V++ K+ P     +  
Sbjct: 311  MGTLVKEDFGKPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIPQDESQG 370

Query: 1085 MATP-EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1143
             A+    ++   S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQK
Sbjct: 371  QASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQK 430

Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G +G+   QEDMP+   GI PDII+NPH +
Sbjct: 431  GTVGMTYTQEDMPWTVEGITPDIIVNPHAI 460



 Score =  181 bits (458), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 86/184 (46%), Positives = 119/184 (64%)

Query: 1187 VSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQED 1246
             S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   QED
Sbjct: 382  TSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 441

Query: 1247 MPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEE 1306
            MP+   GI PDII+NPH  PSRMT+G+LIE + GK     G   + T F    + ++ + 
Sbjct: 442  MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 501

Query: 1307 LIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQP 1366
            L + GY  +G +  Y+G TG  L A I+ GP YYQ+LKHMV DKIH+R RGP  +LTRQP
Sbjct: 502  LHKCGYQMRGFETMYNGHTGRKLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP 561

Query: 1367 TGRR 1370
               R
Sbjct: 562  AEGR 565



 Score = 99.4 bits (246), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/171 (36%), Positives = 85/171 (49%), Gaps = 39/171 (22%)

Query: 677 RPTFLNMHQFLGFKRFD---------------DFLYEGKIEYLDVNEGNDSHIAVSESGI 721
           RP F+   Q L  K+ D               D + +G IEY+D  E   + I+++ + +
Sbjct: 109 RPLFIVEKQRLLIKKKDIRALQERETSEEGWHDLVAKGFIEYIDTEEEETTMISMTINDL 168

Query: 722 ----------RPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTY 771
                          TH EI P  +LGVCA I              +P+P HNQ+PRNTY
Sbjct: 169 INARQNPEEAYSDTYTHCEIHPSLILGVCASI--------------IPFPDHNQSPRNTY 214

Query: 772 QCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAG 822
           Q AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F +LPAG
Sbjct: 215 QSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG 265



 Score = 50.4 bits (119), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 39/68 (57%), Gaps = 8/68 (11%)

Query: 270 TPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMFNGEELSS---PGVYLVF 326
           TPEG+ACGLVKNLALM +IT  +    +L+ +     E  +  N EE+S    P    +F
Sbjct: 1   TPEGQACGLVKNLALMVYITVGSAANPLLEFL-----EEWSTENFEEISPAVIPQATKIF 55

Query: 327 VNGILAGI 334
           VNG   GI
Sbjct: 56  VNGCWVGI 63


>gi|67942356|gb|AAY83378.1| DNA-dependent RNA polymerase II [Strobiloscypha keliae]
          Length = 571

 Score =  214 bits (545), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 104/264 (39%), Positives = 163/264 (61%), Gaps = 5/264 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 238  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFSERMDTMANILYYPQKPLATTRSMEYLKF 297

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA + +M YSGY+ ED++IMN++S+DRG  R L YR+     K+   Q  +  
Sbjct: 298  RELPAGQNAIVGIMCYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYMDQEKRIGMQVVEEF 357

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPE---- 1089
              PL     +     +  LD+DG+VAPG ++    +++ K+ P I+  A  M   +    
Sbjct: 358  EKPLRTNTLKLKHGTYDKLDEDGLVAPGVRVSGEDIIIGKTAP-IAPDADEMGQRQKYHT 416

Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             ++V    + +    +++V++++N+E    +K+ +R T+ P+IGDKF+SRHGQKG IG+ 
Sbjct: 417  KRDVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGIT 476

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
               EDMPF   G+ PD+I+NPH +
Sbjct: 477  YRSEDMPFTSEGVVPDLIINPHAI 500



 Score =  123 bits (308), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 57/154 (37%), Positives = 92/154 (59%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    + +    +++V++++N+E    +K+ +R T+ P+IGDKF+SRHGQKG IG+  
Sbjct: 418  RDVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITY 477

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
              EDMPF   G+ PD+I+NPH  PSRMT+  LIE    K   + G   + T F    +  
Sbjct: 478  RSEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTDVTVDS 537

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSG 1336
            V   L + GY  +G ++ Y+G TG+ + A ++ G
Sbjct: 538  VSTLLRQEGYQSRGFEVMYNGYTGKKMVAQVFLG 571



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/160 (33%), Positives = 75/160 (46%), Gaps = 42/160 (26%)

Query: 695 FLYEGKIEYLDVNEGNDSHIAVS--------------------------ESGIRPGVT-- 726
            L EG +EY+D  E     I ++                          ++ I+P     
Sbjct: 162 LLREGAVEYVDAEEEETIMIVMTPEDLELARQVAQGYEVEEETDPNKRVKAPIKPNTHQY 221

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 222 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 267

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 268 FSERMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAI 307



 Score = 57.0 bits (136), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 43/70 (61%), Gaps = 2/70 (2%)

Query: 265 LCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMFNGEELSSPGVYL 324
           +CP++TPEG+ACGLVKNLALM++I+     + + + +    +E +  +  E   SP    
Sbjct: 5   VCPAETPEGQACGLVKNLALMSYISIGTPGQPIAEFLAQRNMEMLEEY--EPQRSPNATK 62

Query: 325 VFVNGILAGI 334
           +FVNG   G+
Sbjct: 63  IFVNGTWVGV 72


>gi|52699816|gb|AAU86970.1| DNA-dependent RNA polymerase II second largest subunit [Gyalecta
            jenensis]
          Length = 714

 Score =  214 bits (545), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 159/263 (60%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++ +    F
Sbjct: 364  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDERMDTMSNILYYPQKPLGTTRAMEFLKF 423

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR+     K+      ++ 
Sbjct: 424  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYMEQEKRVGISLVEQF 483

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEY--- 1090
              PL     R     +  LD DGI+APG ++    +++ K+ P    S       ++   
Sbjct: 484  EKPLRSETLRVKHGTYDKLDDDGIIAPGVRVSGEDIIIGKTAPIAPDSEEMGQRTKFHTK 543

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++     + +    ++KVLV++N+E    +K+ +R T+ P+IGDKF+SRHGQKG IG+  
Sbjct: 544  RDASTPLRSTENGIVDKVLVTTNAEGLKFVKVRMRTTKVPQIGDKFASRHGQKGTIGITY 603

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PD+I+NPH +
Sbjct: 604  RQEDMPFTADGIPPDLIINPHAI 626



 Score =  163 bits (413), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 92/240 (38%), Positives = 132/240 (55%), Gaps = 13/240 (5%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESG-ICPDIIMNPHGL 1173
            L+ Q  +P   +    +HG        G+I  G+ V  ED+   ++  I PD       +
Sbjct: 479  LVEQFEKPLRSETLRVKHGTYDKLDDDGIIAPGVRVSGEDIIIGKTAPIAPD----SEEM 534

Query: 1174 KGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
                +    ++     + +    ++KVLV++N+E    +K+ +R T+ P+IGDKF+SRHG
Sbjct: 535  GQRTKFHTKRDASTPLRSTENGIVDKVLVTTNAEGLKFVKVRMRTTKVPQIGDKFASRHG 594

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGT 1293
            QKG IG+   QEDMPF   GI PD+I+NPH  PSRMT+  LIE L  K   + G   + T
Sbjct: 595  QKGTIGITYRQEDMPFTADGIPPDLIINPHAIPSRMTIAHLIECLLSKVSALRGCEGDAT 654

Query: 1294 AFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHA 1353
             F    +  V + L  HGY  +G +I Y+G TG  L A I+ GP YYQ+L+HMV DKI A
Sbjct: 655  PFTDITVDSVSDLLRGHGYQSRGFEIMYNGHTGRKLVAQIFLGPTYYQRLRHMVDDKIXA 714



 Score =  110 bits (274), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 53/151 (35%), Positives = 93/151 (61%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  T+TN L  ++ TGNW   ++    + GV+QVL+R ++ S L  + R N+
Sbjct: 43  EFNLALGVKSTTLTNGLKYSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNT 102

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT  +  + +++ + +
Sbjct: 103 PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGSPSEPIIEFIVS 162

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
             +E +  +  E   +P    VFVNG+  G+
Sbjct: 163 RNMEVLEEY--EPTRNPHSTKVFVNGVWVGV 191



 Score = 87.8 bits (216), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 57/100 (57%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 348 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 393

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++ +    F +LPAG+  I
Sbjct: 394 FDERMDTMSNILYYPQKPLGTTRAMEFLKFRELPAGQNAI 433


>gi|89274894|gb|ABD65888.1| RNA polymerase II second largest subunit, partial [Laetiporus
            sulphureus]
          Length = 897

 Score =  214 bits (545), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 163/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 526  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLRF 585

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 586  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEF 645

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS-AISMATPEY-- 1090
              P  E   R     +  L+ DG++APG  +    +++ K+ P    S  +   T  +  
Sbjct: 646  EKPTRENTLRMKHGTYDKLEDDGLIAPGTGVNGEDIIIGKTAPIPPDSEELGQRTRAHTR 705

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++N+E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 706  RDVSTPLKSTESGIIDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 765

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDI++NPH +
Sbjct: 766  RQEDMPFTAEGITPDIVINPHAI 788



 Score =  191 bits (486), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 89/188 (47%), Positives = 123/188 (65%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++N+E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 706  RDVSTPLKSTESGIIDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 765

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDI++NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 766  RQEDMPFTAEGITPDIVINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVES 825

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
            V + L + GY  +G ++ Y G TG  L+A +Y GP YYQ+LKHMV DKIH+R+RGP  +L
Sbjct: 826  VSQFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMVDDKIHSRARGPVQIL 885

Query: 1363 TRQPTGRR 1370
            TRQP   R
Sbjct: 886  TRQPVEGR 893



 Score =  108 bits (271), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 94/151 (62%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKM-ERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++ +TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 220 EFNLNLAVKHNTITNGLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNT 279

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNL+LM+ I+  +    +++ +  
Sbjct: 280 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSCISVGSLSAPVIEFLEE 339

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E  ++      ++P    VFVNG+  G+
Sbjct: 340 WGLE--SLEENAHSATPCTK-VFVNGVWMGV 367



 Score = 86.7 bits (213), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 55/156 (35%), Positives = 81/156 (51%), Gaps = 22/156 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LGVCA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 510 THCEIHPSMILGVCASI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYLTN 555

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQISPGGAEELTARESCHEVLKI 846
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I    A    +  +  + + +
Sbjct: 556 FLVRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNAIV---AILCYSGYNQEDSVIM 612

Query: 847 ISFSISVAVFDSVWLG-----DVKQGVHQLSEEKEP 877
              SI   +F S++       + K G+ QL E ++P
Sbjct: 613 NQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEFEKP 648



 Score = 58.2 bits (139), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 14/114 (12%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A++ L    + H+ +       KA +   MI R++LA  +   LDDRD++G KRL+LAG 
Sbjct: 131 AQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAAMERRDLDDRDHFGKKRLDLAGP 190

Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYGN 555
           LL+ +F  +F++   ++           KE NL+  V    + +G  + L  GN
Sbjct: 191 LLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLNLAVKHNTITNGLKYSLATGN 244


>gi|403417741|emb|CCM04441.1| predicted protein [Fibroporia radiculosa]
          Length = 1226

 Score =  214 bits (545), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 163/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 756  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLRF 815

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 816  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSMYYRSYMDLEKKSGVQQLEEF 875

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS-AISMATPEY-- 1090
              P  E   R     +  L+ DG++APG  +    +++ K+ P    S  +   T  +  
Sbjct: 876  EKPTRENTLRMKHGTYDKLEDDGLIAPGTGVNGEDIIIGKTAPIPPDSEELGQRTRAHTR 935

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++N+E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 936  RDVSTPLKSTESGIIDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 995

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PD+I+NPH +
Sbjct: 996  RQEDMPFTAEGITPDLIINPHAI 1018



 Score =  192 bits (487), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 90/188 (47%), Positives = 123/188 (65%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++N+E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 936  RDVSTPLKSTESGIIDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 995

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PD+I+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 996  RQEDMPFTAEGITPDLIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVES 1055

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
            V + L + GY  +G +I Y G TG  L+A +Y GP YYQ+LKHMV DKIH+R+RGP  +L
Sbjct: 1056 VSQFLRQKGYQSRGLEIMYHGHTGRKLQAQVYLGPTYYQRLKHMVDDKIHSRARGPVQIL 1115

Query: 1363 TRQPTGRR 1370
            TRQP   R
Sbjct: 1116 TRQPVEGR 1123



 Score =  109 bits (272), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 92/151 (60%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKM-ERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++ +TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 450 EFNLNLAVKHNTITNGLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNT 509

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNL+LM+ I+  +    +++ +  
Sbjct: 510 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSCISVGSLSAPVIEFLEE 569

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E +        S+     VFVNG+  G+
Sbjct: 570 WGLESL---EENAHSATPCTKVFVNGVWMGV 597



 Score = 87.4 bits (215), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 46/110 (41%), Positives = 63/110 (57%), Gaps = 18/110 (16%)

Query: 721 IRPGVT----THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMG 776
           ++P +T    TH EI P  +LGVCA I              +P+P HNQ+PRNTYQ AMG
Sbjct: 730 LKPTITAHTWTHCEIHPSMILGVCASI--------------IPFPDHNQSPRNTYQSAMG 775

Query: 777 KQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
           KQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 776 KQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNAI 825



 Score = 57.8 bits (138), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 14/114 (12%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A++ L    + H+ +       KA +   MI R++LA  +   LDDRD++G KRL+LAG 
Sbjct: 361 AQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAAMERRDLDDRDHFGKKRLDLAGP 420

Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYGN 555
           LL+ +F  +F++   ++           KE NL+  V    + +G  + L  GN
Sbjct: 421 LLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLNLAVKHNTITNGLKYSLATGN 474



 Score = 43.9 bits (102), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 30/44 (68%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSD 157
           D W ++ SF ++KGLV+  +DSFD F+   +++L+  NA++  D
Sbjct: 35  DCWTVISSFFEQKGLVRQQLDSFDEFVQNTMQELVDENADLILD 78


>gi|110669596|gb|ABG81893.1| RNA polymerase II second largest subunit [Pertusaria dactylina]
          Length = 714

 Score =  214 bits (545), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 109/267 (40%), Positives = 166/267 (62%), Gaps = 11/267 (4%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 366  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDERMDTMSNILYYPQKPLATTRSMEFLKF 425

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR      K+      ++ 
Sbjct: 426  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQEKRIGMSVVEQF 485

Query: 1034 LGPLLEADTRKPVY-RHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKE 1092
              P + +DT K  +  +  LD DGIVAPG ++    +++ K+ P I+  A  +   +  +
Sbjct: 486  EKP-MRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAP-IAPDAEELG--QRTK 541

Query: 1093 VPVSYKGSVP------SYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVI 1146
            + +    S P        ++KVL+++N+E    +K+ +R T+ P+IGDKF+SRHGQKG I
Sbjct: 542  LHIKRDASTPLRTTENGIVDKVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTI 601

Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G+   QEDMPF   G+ PD+I+NPH +
Sbjct: 602  GITYRQEDMPFTSEGVVPDLIINPHAI 628



 Score =  156 bits (395), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 86/244 (35%), Positives = 130/244 (53%), Gaps = 25/244 (10%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESG-ICPDIIMNPHGL 1173
            ++ Q  +P   D    +HG        G++  G+ V  ED+   ++  I PD        
Sbjct: 481  VVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPD-------- 532

Query: 1174 KGCDRITEYKEVPVSYKGSVP------SYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDK 1227
               + + +  ++ +    S P        ++KVL+++N+E    +K+ +R T+ P+IGDK
Sbjct: 533  --AEELGQRTKLHIKRDASTPLRTTENGIVDKVLLTTNAEGLRFVKVRMRTTKIPQIGDK 590

Query: 1228 FSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEG 1287
            F+SRHGQKG IG+   QEDMPF   G+ PD+I+NPH  PSRMT+  LIE    K   + G
Sbjct: 591  FASRHGQKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRG 650

Query: 1288 NYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMV 1347
               + T F    +  V   L  HGY  +G ++ Y+G TG  L   ++ GP YYQ+L+HMV
Sbjct: 651  FEGDATPFTEVTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVVQVFLGPTYYQRLRHMV 710

Query: 1348 QDKI 1351
             DKI
Sbjct: 711  DDKI 714



 Score =  112 bits (280), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 92/151 (60%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  T+TN L  ++ TGNW   ++    + GV+QVL+R ++ S L  + R N+
Sbjct: 43  EFNLTLGVKSTTLTNGLKYSLATGNWGDQKKAASAKAGVSQVLNRYTFASTLSHLRRTNT 102

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM  +T  +  + ++  M +
Sbjct: 103 PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCCVTVGSPSEPIIDFMIS 162

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
             +E +  +  E L SP    +FVNG+  G+
Sbjct: 163 RSMEVLEEY--EPLRSPNATKIFVNGVWIGV 191



 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 350 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 395

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 396 FDERMDTMSNILYYPQKPLATTRSMEFLKFRELPAGQNAI 435


>gi|56694310|gb|AAW22895.1| RNA polymerase II second largest subunit [Polystichum lonchitis]
          Length = 527

 Score =  214 bits (544), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 106/262 (40%), Positives = 161/262 (61%), Gaps = 3/262 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 199  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHF 258

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R + YR+ +   K+      +  
Sbjct: 259  RQLPAGINAVVAIACYSGYNQEDSVIMNQSSIDRGFFRSIFYRSYRDEEKKQGTLVKEEF 318

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEY--K 1091
              P+ E         +  LD DG+  PG ++    V++ K+ P I+          Y  +
Sbjct: 319  ERPIRENTQGMRHGSYGKLDDDGLAPPGTRVSGEDVIIGKTTP-IAQDDTGTQAQRYSKR 377

Query: 1092 EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVE 1151
            +     + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   
Sbjct: 378  DQSTCLRHSESGMVDQVLLTTNADGLRFVKIRVRSIRIPQIGDKFSSRHGQKGTVGMTYT 437

Query: 1152 QEDMPFNESGICPDIIMNPHGL 1173
            QEDMP+ + GI PDII+NPH +
Sbjct: 438  QEDMPWTQEGITPDIIVNPHAI 459



 Score =  129 bits (324), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 60/137 (43%), Positives = 88/137 (64%)

Query: 1197 LEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICP 1256
            +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   QEDMP+ + GI P
Sbjct: 391  VDQVLLTTNADGLRFVKIRVRSIRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTQEGITP 450

Query: 1257 DIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQG 1316
            DII+NPH  PSRMT+G+LIE + GK     G   + T F    + ++ + L + GY  +G
Sbjct: 451  DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG 510

Query: 1317 KDIFYSGITGEALEAYI 1333
             +  Y G TG  L A I
Sbjct: 511  FETMYXGHTGRRLNAMI 527



 Score =  100 bits (249), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 63/171 (36%), Positives = 86/171 (50%), Gaps = 39/171 (22%)

Query: 677 RPTFLNMHQFLGFKRFD---------------DFLYEGKIEYLDVNEGNDSHIAVS---- 717
           RP F+   Q L  K+ D               D + +G IEY+D  E   + I+++    
Sbjct: 108 RPLFIVEKQRLLIKKSDIRALQQKESAEPGWYDLVTKGFIEYVDTEEEETTMISMTIQDL 167

Query: 718 -ESGIRP-----GVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTY 771
             + + P        TH EI P  +LGVCA I              +P+P HNQ+PRNTY
Sbjct: 168 VNARLHPEEAYSDTYTHCEIHPSMILGVCASI--------------IPFPDHNQSPRNTY 213

Query: 772 QCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAG 822
           Q AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F +LPAG
Sbjct: 214 QSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG 264



 Score = 49.3 bits (116), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 39/67 (58%), Gaps = 8/67 (11%)

Query: 271 PEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMFNGEELSS---PGVYLVFV 327
           PEG+ACGLVKNLALM++IT  +    +L+ +     E  +  N EE+S    P    +FV
Sbjct: 1   PEGQACGLVKNLALMSYITVGSAANPILEFL-----EEWSTENFEEISPAVIPQATKIFV 55

Query: 328 NGILAGI 334
           NG   GI
Sbjct: 56  NGCWVGI 62


>gi|46277277|gb|AAS86829.1| RNA polymerase II second largest subunit, partial [Astilbe chinensis]
          Length = 540

 Score =  214 bits (544), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 110/270 (40%), Positives = 167/270 (61%), Gaps = 19/270 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 202  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 261

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L +R+ +           ++ 
Sbjct: 262  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR---------DEEKK 312

Query: 1034 LGPLLEADTRKP------VYRHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            +G L++ D  +P        RH +   LD DG+  PG ++    V++ K+ P     +  
Sbjct: 313  MGTLVKEDFGRPNRNDTMNMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIAQDESQG 372

Query: 1085 MATPEYK-EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1143
             A+   K +   S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQK
Sbjct: 373  QASRYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQK 432

Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G +G+   QEDMP+   GI PDII+NPH +
Sbjct: 433  GTVGMTYTQEDMPWTVEGITPDIIVNPHAI 462



 Score =  143 bits (360), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 68/157 (43%), Positives = 99/157 (63%)

Query: 1187 VSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQED 1246
             S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   QED
Sbjct: 384  TSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 443

Query: 1247 MPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEE 1306
            MP+   GI PDII+NPH  PSRMT+G+LIE + GK     G   + T F    + ++ + 
Sbjct: 444  MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 503

Query: 1307 LIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKL 1343
            L + GY  +G +  Y+G TG  L A I+ GP YYQ+L
Sbjct: 504  LHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 540



 Score = 99.0 bits (245), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/141 (39%), Positives = 78/141 (55%), Gaps = 24/141 (17%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVS-----ESGIRPGVT-----THLEIAPFTLLGVCA 741
           + D + +G IEY+D  E   + I+++      + + P        TH EI P  +LGVCA
Sbjct: 141 WHDLVAKGFIEYVDTEEEETTMISMTINDLVSARLNPEEAYSEYYTHCEIHPSLILGVCA 200

Query: 742 GIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYA 801
            I              +P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y 
Sbjct: 201 SI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYP 246

Query: 802 QRPMVESKTIRITNFHKLPAG 822
           Q+P+V ++ +   +F +LPAG
Sbjct: 247 QKPLVTTRAMEHLHFRQLPAG 267



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 40/69 (57%), Gaps = 8/69 (11%)

Query: 269 DTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMFNGEELSS---PGVYLV 325
           +TPEG+ACGLVKNLALM +IT  +    +L+ +   G E     N EE+S    P    +
Sbjct: 1   ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTE-----NFEEISPAVIPEATKI 55

Query: 326 FVNGILAGI 334
           FVNG   GI
Sbjct: 56  FVNGCWVGI 64


>gi|350539902|ref|NP_001234825.1| RNA polymerase II second largest subunit [Solanum lycopersicum]
 gi|68300807|gb|AAY89345.1| RNA polymerase II second largest subunit [Solanum lycopersicum]
          Length = 1205

 Score =  214 bits (544), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 110/271 (40%), Positives = 165/271 (60%), Gaps = 21/271 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 736  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 795

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRG  R L +R+ +           ++ 
Sbjct: 796  RQLPAGINAIVAITCYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYR---------DEEKK 846

Query: 1034 LGPLLEADTRKPVYRHR---------ALDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            +G L++ D  +P   H           L+ DG   PG ++    V++ K+ P IS     
Sbjct: 847  MGTLVKEDFGRPDREHTMGMRHGNYDKLEDDGFAPPGTRVSGDDVIIGKTTP-ISQDEAQ 905

Query: 1085 MATPEY--KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQ 1142
              +  Y  K+   S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQ
Sbjct: 906  GQSARYTRKDHSTSLRHSETGIVDQVLLTTNADGLRFVKIRMRSVRIPQIGDKFSSRHGQ 965

Query: 1143 KGVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            KG IG+   QEDMP++  GI PDII+NPH +
Sbjct: 966  KGTIGMTYTQEDMPWSAEGITPDIIVNPHAI 996



 Score =  179 bits (455), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 87/188 (46%), Positives = 119/188 (63%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            K+   S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG IG+  
Sbjct: 914  KDHSTSLRHSETGIVDQVLLTTNADGLRFVKIRMRSVRIPQIGDKFSSRHGQKGTIGMTY 973

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMP++  GI PDII+NPH  PSRMT+G+L+E + GK     G   + T F    +  
Sbjct: 974  TQEDMPWSAEGITPDIIVNPHAIPSRMTIGQLVECIMGKVAAHIGKEGDATPFTDVTVDS 1033

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
            +   L   GY  +G +  Y+G TG  L A I+ GP YYQ+LKHMV DKIH+R RGP  +L
Sbjct: 1034 ISRTLHNCGYQMRGFERMYNGHTGRVLPAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQIL 1093

Query: 1363 TRQPTGRR 1370
            TRQP   R
Sbjct: 1094 TRQPAEGR 1101



 Score =  114 bits (285), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 61/146 (41%), Positives = 87/146 (59%), Gaps = 8/146 (5%)

Query: 192 MRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKV 251
           ++  TIT+ L  ++ TGNW        R GV+QVL+RL++ S L  + R+NS   +  K+
Sbjct: 458 IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTFASTLSHLRRLNSPIGREGKL 517

Query: 252 SGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAM 311
           + PR L  S WGM+CP++TPEG+ACGLVKNLALM +IT  +    +L+ +     E  + 
Sbjct: 518 AKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFL-----EEWST 572

Query: 312 FNGEELSS---PGVYLVFVNGILAGI 334
            N EE+S    P    +FVNG   GI
Sbjct: 573 ENFEEISPAVIPQSTKIFVNGCWVGI 598



 Score =  102 bits (255), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/141 (41%), Positives = 78/141 (55%), Gaps = 24/141 (17%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIA-----VSESGIRPG-----VTTHLEIAPFTLLGVCA 741
           + D + +G IEY+D  E   + IA     ++ S + P        TH EI P  +LGVCA
Sbjct: 675 WHDLVAKGFIEYVDTEEEETTMIAMTINDLTNSRVNPDEAYAETYTHCEIHPSLILGVCA 734

Query: 742 GIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYA 801
            I              +P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y 
Sbjct: 735 SI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYP 780

Query: 802 QRPMVESKTIRITNFHKLPAG 822
           Q+P+V ++ +   +F +LPAG
Sbjct: 781 QKPLVTTRAMEHLHFRQLPAG 801



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 14/114 (12%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A++ L    + H+         KA Y   +I R++L +      DDRD+Y NKRL+LAG 
Sbjct: 362 AKEILQREMLPHVGTREYCETKKAYYFGYIIHRLLLCVLGRRPEDDRDHYANKRLDLAGP 421

Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYGN 555
           LL  +F  +F++   ++           K+ NL   +    + SG  + L  GN
Sbjct: 422 LLGGLFRMLFRKLTRDVRSYVQKCVDGGKDVNLQFAIKAKTITSGLKYSLATGN 475



 Score = 48.9 bits (115), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 9/80 (11%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDI---------EYTRGSQRVVRSDLV 391
           + +P + ES   T    P   RLR+LTYS+P+ VD+         +Y   ++    + + 
Sbjct: 114 LSRPMMTESDGETNTLFPKAARLRNLTYSSPLYVDVKKEVIKKGHDYEEVTENQEFTKVF 173

Query: 392 IGRMPIMLQSSKCVLRNKTE 411
           IG++PIML+SS C L N +E
Sbjct: 174 IGKVPIMLRSSYCSLYNLSE 193



 Score = 42.7 bits (99), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 28/41 (68%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANI 154
           D W ++ S+ +EKGLV+  +DSFD FI   +++++   A+I
Sbjct: 44  DAWAVISSYFEEKGLVRQQLDSFDEFIQNTMQEIVDETADI 84


>gi|46277275|gb|AAS86828.1| RNA polymerase II second largest subunit, partial [Acer circinatum]
          Length = 580

 Score =  214 bits (544), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 109/270 (40%), Positives = 168/270 (62%), Gaps = 19/270 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 209  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 268

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L +R+ +           ++ 
Sbjct: 269  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR---------DEEKK 319

Query: 1034 LGPLLEADTRKPV------YRHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            +G L++ D  +P        RH +   LD DG+  PG ++    V++ K+ P     A  
Sbjct: 320  MGTLVKEDFGRPDRCNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDEAQG 379

Query: 1085 MATP-EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1143
             ++    ++  +S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQK
Sbjct: 380  QSSRYTRRDHSISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQK 439

Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G +G+   QEDMP+   GI PDII+NPH +
Sbjct: 440  GTVGMTYTQEDMPWTVEGITPDIIVNPHAI 469



 Score =  180 bits (457), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 86/184 (46%), Positives = 120/184 (65%)

Query: 1187 VSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQED 1246
            +S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   QED
Sbjct: 391  ISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 450

Query: 1247 MPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEE 1306
            MP+   GI PDII+NPH  PSRMT+G+LIE + GK     G   + T F    + ++ + 
Sbjct: 451  MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 510

Query: 1307 LIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQP 1366
            L + GY  +G +  Y+G TG  L A I+ GP YYQ+LKHMV DKIH+R RGP  +LTRQP
Sbjct: 511  LHKCGYQMRGFETMYNGHTGRRLPAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP 570

Query: 1367 TGRR 1370
               R
Sbjct: 571  AEGR 574



 Score =  100 bits (249), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 56/141 (39%), Positives = 80/141 (56%), Gaps = 24/141 (17%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVS-----ESGIRP-----GVTTHLEIAPFTLLGVCA 741
           + + + +G IEY+D  E   + I+++     ++ + P     G  TH EI P  +LGVCA
Sbjct: 148 WHELVSKGFIEYIDTEEEETTMISMTINDLVQARLNPEDAYSGCYTHCEIHPSLILGVCA 207

Query: 742 GIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYA 801
            I              +P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y 
Sbjct: 208 SI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYP 253

Query: 802 QRPMVESKTIRITNFHKLPAG 822
           Q+P+V ++ +   +F +LPAG
Sbjct: 254 QKPLVTTRAMEHLHFRQLPAG 274



 Score = 68.6 bits (166), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/76 (47%), Positives = 47/76 (61%), Gaps = 8/76 (10%)

Query: 262 WGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMFNGEELSS-- 319
           WGM+CP++TPEG+ACGLVKNLALM +IT  +    +L+ +   G E     N EE+S   
Sbjct: 1   WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTE-----NFEEISPAV 55

Query: 320 -PGVYLVFVNGILAGI 334
            P    +FVNG   GI
Sbjct: 56  IPQSTKIFVNGCWVGI 71


>gi|40644547|emb|CAD88888.1| DNA-directed RNA polymerase subunit B [Gymnosporia arbutifolia]
          Length = 459

 Score =  214 bits (544), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 109/270 (40%), Positives = 167/270 (61%), Gaps = 19/270 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 112  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 171

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L +R+ +           ++ 
Sbjct: 172  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSVDRGFFRSLFFRSYR---------DEEKK 222

Query: 1034 LGPLLEADTRKPV------YRHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            +G L++ D  +P        RH +   LD DG+  PG ++    V++ K+ P     A  
Sbjct: 223  MGTLVKEDFGRPDRASTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPITQEDAQG 282

Query: 1085 MATP-EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1143
              +    ++  +S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQK
Sbjct: 283  QGSRYTRRDHSISLRHSETGMVDQVLLTTNADGLRSVKVRVRSVRIPQIGDKFSSRHGQK 342

Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G +G+   QEDMP+   GI PDII+NPH +
Sbjct: 343  GTVGMTYTQEDMPWTVEGITPDIIVNPHAI 372



 Score =  161 bits (408), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 77/166 (46%), Positives = 108/166 (65%)

Query: 1187 VSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQED 1246
            +S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   QED
Sbjct: 294  ISLRHSETGMVDQVLLTTNADGLRSVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 353

Query: 1247 MPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEE 1306
            MP+   GI PDII+NPH  PSRMT+G+LIE L GK     G   + T F    + ++ + 
Sbjct: 354  MPWTVEGITPDIIVNPHAIPSRMTIGQLIECLMGKVAAHMGKEGDATPFTDVTVDNISKA 413

Query: 1307 LIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIH 1352
            L + GY  +G +  Y+G TG  L A I+ GP YYQ+LKHMV DKIH
Sbjct: 414  LHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIH 459



 Score = 96.7 bits (239), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 54/141 (38%), Positives = 78/141 (55%), Gaps = 24/141 (17%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVS-----ESGIRPG-----VTTHLEIAPFTLLGVCA 741
           + + + +G IEY+D  +   + I ++     ++ + P        TH EI P  +LGVCA
Sbjct: 51  WHELIKKGFIEYIDTEKEETTMIPMTINDLVQARVNPEEAYSETYTHCEIHPSLILGVCA 110

Query: 742 GIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYA 801
            I              +P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y 
Sbjct: 111 SI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYP 156

Query: 802 QRPMVESKTIRITNFHKLPAG 822
           Q+P+V ++ +   +F +LPAG
Sbjct: 157 QKPLVTTRAMEHLHFRQLPAG 177


>gi|225446351|ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Vitis
            vinifera]
 gi|147841183|emb|CAN72948.1| hypothetical protein VITISV_033708 [Vitis vinifera]
 gi|302143287|emb|CBI21848.3| unnamed protein product [Vitis vinifera]
          Length = 1193

 Score =  214 bits (544), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 109/270 (40%), Positives = 167/270 (61%), Gaps = 19/270 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 719  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHF 778

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L +R+ +           ++ 
Sbjct: 779  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR---------DEEKK 829

Query: 1034 LGPLLEADTRKPV------YRHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            +G L++ D  +P        RH +   LD DG+  PG ++    V++ K+ P     +  
Sbjct: 830  MGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDSQG 889

Query: 1085 MATP-EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1143
             A+    ++   S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQK
Sbjct: 890  QASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQK 949

Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G +G+   QEDMP+   GI PDII+NPH +
Sbjct: 950  GTVGMTYTQEDMPWTVEGITPDIIVNPHAI 979



 Score =  181 bits (458), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 86/184 (46%), Positives = 119/184 (64%)

Query: 1187 VSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQED 1246
             S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   QED
Sbjct: 901  TSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 960

Query: 1247 MPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEE 1306
            MP+   GI PDII+NPH  PSRMT+G+LIE + GK     G   + T F    + ++ + 
Sbjct: 961  MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 1020

Query: 1307 LIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQP 1366
            L + GY  +G +  Y+G TG  L A I+ GP YYQ+LKHMV DKIH+R RGP  +LTRQP
Sbjct: 1021 LHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP 1080

Query: 1367 TGRR 1370
               R
Sbjct: 1081 AEGR 1084



 Score =  116 bits (290), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 62/146 (42%), Positives = 87/146 (59%), Gaps = 8/146 (5%)

Query: 192 MRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKV 251
           ++  TIT+ L  ++ TGNW        R GV+QVL+RL+Y S L  + R+NS   +  K+
Sbjct: 441 IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKL 500

Query: 252 SGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAM 311
           + PR L  S WGM+CP++TPEG+ACGLVKNLALM +IT  +    +L+ +     E  + 
Sbjct: 501 AKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFL-----EEWST 555

Query: 312 FNGEELSS---PGVYLVFVNGILAGI 334
            N EE+S    P    +FVNG   GI
Sbjct: 556 ENFEEISPAVIPQSTKIFVNGCWVGI 581



 Score = 99.4 bits (246), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/172 (36%), Positives = 85/172 (49%), Gaps = 40/172 (23%)

Query: 677 RPTFLNMHQFLGFKRFD----------------DFLYEGKIEYLDVNEGNDSHIAVSESG 720
           RP F+   Q L  K+ D                D + +G IEY+D  E   + I+++ + 
Sbjct: 627 RPLFIVEKQRLLIKKRDIRALQLRESPEDGGWHDLVSKGFIEYVDTEEEETTMISMTIND 686

Query: 721 IRPG----------VTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNT 770
           +               TH EI P  +LGVCA I              +P+P HNQ+PRNT
Sbjct: 687 LISARLNPEEAYSETYTHCEIHPSLILGVCASI--------------IPFPDHNQSPRNT 732

Query: 771 YQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAG 822
           YQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F +LPAG
Sbjct: 733 YQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG 784



 Score = 54.7 bits (130), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 14/114 (12%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A++ L    + H+ V       KA Y   +I R++L        DDRD+YGNKRL+LAG 
Sbjct: 345 AKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP 404

Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYGN 555
           LL  +F  +F++   ++           K+ NL   +    + SG  + L  GN
Sbjct: 405 LLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGN 458



 Score = 47.4 bits (111), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 19/85 (22%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVR------------- 387
           + KP + ES   T    P   RLR+LTYSAP+ VD+     ++R+++             
Sbjct: 96  LSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV-----TKRIIKKGHDLEEVTETQE 150

Query: 388 -SDLVIGRMPIMLQSSKCVLRNKTE 411
            + + IG++PIML+SS C +   +E
Sbjct: 151 FTKVFIGKVPIMLRSSYCTVYQNSE 175



 Score = 42.0 bits (97), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 29/41 (70%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANI 154
           D W ++ ++ +EKGLV+  +DSFD FI   +++++  +A+I
Sbjct: 26  DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADI 66


>gi|110669604|gb|ABG81897.1| RNA polymerase II second largest subunit [Bacidia schweinitzii]
          Length = 720

 Score =  214 bits (544), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 112/267 (41%), Positives = 166/267 (62%), Gaps = 11/267 (4%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 372  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDVRMDTMANILYYPQKPLATTRSMEFLKF 431

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR      K+      ++ 
Sbjct: 432  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQEKRVGMNVVEQF 491

Query: 1034 LGPLLEADTRKPVY-RHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKE 1092
              P + +DT K  +  +  LD DGIVAPG ++    +++ K+ P I+  A  +   +  +
Sbjct: 492  EKP-MRSDTLKLKHGTYDKLDDDGIVAPGVRMSGEDIIIGKTAP-IAPDAEELG--QRTK 547

Query: 1093 VPVSYKGSVP------SYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVI 1146
            + V    S P        +++VL+S+NSE    +K+ +R T+ P+IGDKF+SRHGQKG I
Sbjct: 548  LHVKRDTSTPLRSTENGIVDQVLLSTNSEGLRFVKVRMRTTKVPQIGDKFASRHGQKGTI 607

Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G+   QEDMPF   GI PD+I+NPH +
Sbjct: 608  GITYRQEDMPFTSEGIVPDLIINPHAI 634



 Score =  159 bits (402), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 87/238 (36%), Positives = 132/238 (55%), Gaps = 13/238 (5%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESG-ICPDIIMNPHGL 1173
            ++ Q  +P   D    +HG        G++  G+ +  ED+   ++  I PD       L
Sbjct: 487  VVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRMSGEDIIIGKTAPIAPD----AEEL 542

Query: 1174 KGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
                ++   ++     + +    +++VL+S+NSE    +K+ +R T+ P+IGDKF+SRHG
Sbjct: 543  GQRTKLHVKRDTSTPLRSTENGIVDQVLLSTNSEGLRFVKVRMRTTKVPQIGDKFASRHG 602

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGT 1293
            QKG IG+   QEDMPF   GI PD+I+NPH  PSRMT+  LIE    K   ++G   + T
Sbjct: 603  QKGTIGITYRQEDMPFTSEGIVPDLIINPHAIPSRMTIAHLIECQLSKVSALQGCEGDAT 662

Query: 1294 AFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKI 1351
             F    +  V + L  HGY  +G ++ Y+G TG  L A ++ GP YYQ+L+HMV DKI
Sbjct: 663  PFTEVTVDSVSKLLRVHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKI 720



 Score =  116 bits (291), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 93/151 (61%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  T+TN L  ++ TGNW  ++  M  + GV+QVL+R ++ S L  + R N+
Sbjct: 46  EFNLTLAVKSTTLTNGLKYSLATGNWGDQKKAMSSKAGVSQVLNRYTFASTLSHLRRTNT 105

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT     + ++  M  
Sbjct: 106 PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQ 165

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
             +E +  +  E L++P    VFVNG+  G+
Sbjct: 166 RNMEVLEEY--EPLNNPNATKVFVNGVWVGV 194



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/122 (36%), Positives = 66/122 (54%), Gaps = 14/122 (11%)

Query: 705 DVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHN 764
           D+ E  ++ +    +  +    TH EI P  +LG+CA I              +P+P HN
Sbjct: 334 DLIEDPNARVKAQTNPTQQHAWTHCEIHPSMILGICASI--------------IPFPDHN 379

Query: 765 QAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKC 824
           Q+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+ 
Sbjct: 380 QSPRNTYQSAMGKQAMGVFLTNYDVRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQN 439

Query: 825 QI 826
            I
Sbjct: 440 AI 441


>gi|356530409|ref|XP_003533774.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Glycine
            max]
          Length = 1192

 Score =  214 bits (544), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 109/270 (40%), Positives = 167/270 (61%), Gaps = 19/270 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 720  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 779

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +++  YSGY+ ED++IMN++S+DRGF R L +R+ +           ++ 
Sbjct: 780  RQLPAGINAIVSIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR---------DEEKK 830

Query: 1034 LGPLLEADTRKPV------YRHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            +G L++ D  +P        RH +   LD DG+  PG ++    V++ K+ P     A  
Sbjct: 831  MGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQEEAQG 890

Query: 1085 MATP-EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1143
             A     ++  +S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQK
Sbjct: 891  QALRYTRRDHSISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQK 950

Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G +G+   QEDMP+   GI PDII+NPH +
Sbjct: 951  GTVGMTYTQEDMPWTVEGITPDIIVNPHAI 980



 Score =  181 bits (459), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 86/184 (46%), Positives = 120/184 (65%)

Query: 1187 VSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQED 1246
            +S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   QED
Sbjct: 902  ISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 961

Query: 1247 MPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEE 1306
            MP+   GI PDII+NPH  PSRMT+G+LIE + GK     G   + T F    + ++ + 
Sbjct: 962  MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 1021

Query: 1307 LIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQP 1366
            L + GY  +G +  Y+G TG  L A I+ GP YYQ+LKHMV DKIH+R RGP  +LTRQP
Sbjct: 1022 LHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP 1081

Query: 1367 TGRR 1370
               R
Sbjct: 1082 AEGR 1085



 Score =  119 bits (299), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 64/146 (43%), Positives = 88/146 (60%), Gaps = 8/146 (5%)

Query: 192 MRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKV 251
           ++  TIT+ L  ++ TGNW        R GV+QVL+RL+Y S L  + R+NS   +  K+
Sbjct: 442 IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKL 501

Query: 252 SGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAM 311
           + PR L  SQWGM+CP++TPEG+ACGLVKNLALM +IT  +    +L+ +   G E    
Sbjct: 502 AKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTE---- 557

Query: 312 FNGEELSS---PGVYLVFVNGILAGI 334
            N EE+S    P    +FVNG   GI
Sbjct: 558 -NFEEISPAVIPQATKIFVNGCWMGI 582



 Score =  102 bits (253), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/141 (40%), Positives = 79/141 (56%), Gaps = 24/141 (17%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVS-----ESGIRP-----GVTTHLEIAPFTLLGVCA 741
           + D + +G IEY+D  E   + I+++     ++ I P        TH EI P  +LGVCA
Sbjct: 659 WHDLVSKGFIEYIDTEEEETTMISMTINDLVQARINPEDAYSDTYTHCEIHPSLILGVCA 718

Query: 742 GIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYA 801
            I              +P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y 
Sbjct: 719 SI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYP 764

Query: 802 QRPMVESKTIRITNFHKLPAG 822
           Q+P+V ++ +   +F +LPAG
Sbjct: 765 QKPLVTTRAMEHLHFRQLPAG 785



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 57/121 (47%), Gaps = 14/121 (11%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           K+  +  A++ L    + H+ V       KA Y   +I R++L        DDRD+YGNK
Sbjct: 339 KEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNK 398

Query: 509 RLELAGSLLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYG 554
           RL+LAG LL  +F  +F++   ++           K+ NL   +    + SG  + L  G
Sbjct: 399 RLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATG 458

Query: 555 N 555
           N
Sbjct: 459 N 459



 Score = 50.1 bits (118), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 19/85 (22%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVR------------- 387
           + KP + ES   T    P   RLR+LTYSAP+ VD+     S+RV++             
Sbjct: 97  LSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV-----SKRVIKKGHDGEEVTEAQD 151

Query: 388 -SDLVIGRMPIMLQSSKCVLRNKTE 411
            + + IG++PIML+SS C L   +E
Sbjct: 152 FTKVFIGKVPIMLRSSYCTLYQNSE 176


>gi|56694304|gb|AAW22892.1| RNA polymerase II second largest subunit [Dicksonia antarctica]
          Length = 525

 Score =  214 bits (544), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 107/261 (40%), Positives = 160/261 (61%), Gaps = 1/261 (0%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 185  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHF 244

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R + YR+ +   K+      +  
Sbjct: 245  RQLPAGINAVVAIACYSGYNQEDSVIMNQSSVDRGFFRSIFYRSYRDEEKKQGTLVKEEF 304

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYK-E 1092
              P  E  +      +  LD DG+  PG ++    V++ K+ P       S A    K +
Sbjct: 305  ERPNRENTSGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDDTGSQAQRYSKRD 364

Query: 1093 VPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQ 1152
                 + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   Q
Sbjct: 365  QSTCLRHSESGMVDQVLLTTNADGLRFVKIRVRSIRIPQIGDKFSSRHGQKGTVGMTYTQ 424

Query: 1153 EDMPFNESGICPDIIMNPHGL 1173
            EDMP+ + GI PDII+NPH +
Sbjct: 425  EDMPWTQEGITPDIIVNPHAI 445



 Score =  149 bits (377), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 68/149 (45%), Positives = 99/149 (66%)

Query: 1197 LEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICP 1256
            +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   QEDMP+ + GI P
Sbjct: 377  VDQVLLTTNADGLRFVKIRVRSIRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTQEGITP 436

Query: 1257 DIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQG 1316
            DII+NPH  PSRMT+G+LIE + GK     G   + T F    + ++ + L + GY  +G
Sbjct: 437  DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG 496

Query: 1317 KDIFYSGITGEALEAYIYSGPVYYQKLKH 1345
             +  Y+G TG  L A I+ GP YYQ+LKH
Sbjct: 497  FETMYNGHTGRRLNAMIFLGPTYYQRLKH 525



 Score =  100 bits (249), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 63/171 (36%), Positives = 86/171 (50%), Gaps = 39/171 (22%)

Query: 677 RPTFLNMHQFLGFKRFD---------------DFLYEGKIEYLDVNEGNDSHIAVS---- 717
           RP F+   Q L  K+ D               D + +G IEY+D  E   + I+++    
Sbjct: 94  RPLFIVEKQRLLIKKSDIRALQQKETTEAGWYDLVTKGFIEYVDTEEEETTMISMTIQDL 153

Query: 718 -ESGIRP-----GVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTY 771
             + + P        TH EI P  +LGVCA I              +P+P HNQ+PRNTY
Sbjct: 154 VNARLHPEEAYSDTYTHCEIHPSMILGVCASI--------------IPFPDHNQSPRNTY 199

Query: 772 QCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAG 822
           Q AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F +LPAG
Sbjct: 200 QSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG 250


>gi|40641904|emb|CAD88602.1| RNA polymerase II second largest subunit [Alangium platanifolium]
          Length = 540

 Score =  214 bits (544), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 109/270 (40%), Positives = 167/270 (61%), Gaps = 19/270 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 202  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 261

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L +R+ +           ++ 
Sbjct: 262  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR---------DEEKK 312

Query: 1034 LGPLLEADTRKPV------YRHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            +G L++ D  +P        RH +   LD DG+  PG ++    V++ K+ P     +  
Sbjct: 313  MGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDDSQG 372

Query: 1085 MATP-EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1143
             A+    ++   S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQK
Sbjct: 373  QASRYSRRDHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQK 432

Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G +G+   QEDMP+   GI PDII+NPH +
Sbjct: 433  GTVGMTYTQEDMPWTVEGITPDIIVNPHAI 462



 Score =  141 bits (356), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 67/156 (42%), Positives = 99/156 (63%)

Query: 1188 SYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDM 1247
            S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   QEDM
Sbjct: 385  SLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDM 444

Query: 1248 PFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEEL 1307
            P+   GI PDII+NPH  PSRMT+G+LIE + GK     G   + T F    + ++ + L
Sbjct: 445  PWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKAL 504

Query: 1308 IRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKL 1343
             + GY  +G +  Y+G TG  L + I+ GP YYQ+L
Sbjct: 505  HKCGYQMRGFETMYNGHTGRRLTSMIFLGPTYYQRL 540



 Score =  100 bits (248), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 57/141 (40%), Positives = 78/141 (55%), Gaps = 24/141 (17%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVS-----ESGIRPG-----VTTHLEIAPFTLLGVCA 741
           + D + +G IEY+D  E   + I+++      + I P        TH EI P  +LGVCA
Sbjct: 141 WHDLVAKGFIEYIDTEEEETTMISMTINDLVSARINPEEAYSETYTHCEIHPSLILGVCA 200

Query: 742 GIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYA 801
            I              +P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y 
Sbjct: 201 SI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYP 246

Query: 802 QRPMVESKTIRITNFHKLPAG 822
           Q+P+V ++ +   +F +LPAG
Sbjct: 247 QKPLVTTRAMEHLHFRQLPAG 267



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 40/69 (57%), Gaps = 8/69 (11%)

Query: 269 DTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMFNGEELSS---PGVYLV 325
           +TPEG+ACGLVKNLALM +IT  +    +L+ +   G E     N EE+S    P    +
Sbjct: 1   ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTE-----NFEEISPAVIPQATKI 55

Query: 326 FVNGILAGI 334
           FVNG   GI
Sbjct: 56  FVNGCWVGI 64


>gi|94410924|gb|ABF18581.1| RNA polymerase II second largest subunit, partial [Porotheleum
            fimbriatum]
          Length = 689

 Score =  214 bits (544), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 105/263 (39%), Positives = 160/263 (60%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 345  IIPFPDHNQSPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKF 404

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+      +  
Sbjct: 405  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIAQLEEF 464

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              PL +   R     +  LD DG+++PG  +    +++ K+ P    S        T   
Sbjct: 465  EKPLRQNTLRMKHGTYDKLDDDGLISPGTGVVGEDIIIGKTAPIPPDSEELGQRTRTHTR 524

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ +R  R P+IGDKF+SRHGQKG IG+  
Sbjct: 525  RDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSIRVPQIGDKFASRHGQKGTIGITY 584

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PD+I+NPH +
Sbjct: 585  RQEDMPFTAEGIVPDLIINPHAI 607



 Score =  160 bits (404), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 75/165 (45%), Positives = 104/165 (63%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++NSE    +K+ +R  R P+IGDKF+SRHGQKG IG+  
Sbjct: 525  RDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSIRVPQIGDKFASRHGQKGTIGITY 584

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PD+I+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 585  RQEDMPFTAEGIVPDLIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVES 644

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMV 1347
            V   L + GY  +G ++ Y G TG  L+A +Y GP YYQ+LKHMV
Sbjct: 645  VSAYLRQKGYQQRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMV 689



 Score =  112 bits (280), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 91/151 (60%), Gaps = 5/151 (3%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 40  EFNLSLAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT 99

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM  I+  +    +++ +  
Sbjct: 100 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEE 159

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E +     E  ++     VFVNG+  G+
Sbjct: 160 WGLEALE----ENANTAASTKVFVNGVWMGV 186



 Score = 91.3 bits (225), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 48/121 (39%), Positives = 66/121 (54%), Gaps = 14/121 (11%)

Query: 706 VNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQ 765
            N+G     A  ++GI     TH EI P  +LG+CA I              +P+P HNQ
Sbjct: 308 ANDGEFDPAARLKAGINAHTWTHCEIHPSMILGICASI--------------IPFPDHNQ 353

Query: 766 APRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQ 825
           +PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  
Sbjct: 354 SPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNA 413

Query: 826 I 826
           I
Sbjct: 414 I 414


>gi|119644095|gb|ABL85606.1| RNA polymerase II second largest subunit [Parmotrema reticulatum]
          Length = 718

 Score =  214 bits (544), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 107/266 (40%), Positives = 163/266 (61%), Gaps = 9/266 (3%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N + R+DT+   L Y Q+P+  ++++    F
Sbjct: 370  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYEQRMDTMANILYYPQKPLATTRSMEFLKF 429

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR      K+      ++ 
Sbjct: 430  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQEKRIGMSVVEQF 489

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKEV 1093
              P+     R     +  LD DG+VAPG ++    +++ K+ P I+  A  +   +  ++
Sbjct: 490  EKPMRSDTLRLKHGTYDKLDDDGLVAPGVRVSGEDIIIGKTAP-IAPDAEELG--QRTKL 546

Query: 1094 PVSYKGSVP------SYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
             V    S P        +++VL+S+N+E    +K+ +R T+ P+IGDKF+SRHGQKG IG
Sbjct: 547  HVKRDTSTPLRSTENGIVDQVLLSTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIG 606

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            +   QEDMPF   G+ PD+I+NPH +
Sbjct: 607  ITYRQEDMPFTSEGMVPDLIINPHAI 632



 Score =  157 bits (398), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 86/238 (36%), Positives = 131/238 (55%), Gaps = 13/238 (5%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESG-ICPDIIMNPHGL 1173
            ++ Q  +P   D    +HG        G++  G+ V  ED+   ++  I PD       L
Sbjct: 485  VVEQFEKPMRSDTLRLKHGTYDKLDDDGLVAPGVRVSGEDIIIGKTAPIAPD----AEEL 540

Query: 1174 KGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
                ++   ++     + +    +++VL+S+N+E    +K+ +R T+ P+IGDKF+SRHG
Sbjct: 541  GQRTKLHVKRDTSTPLRSTENGIVDQVLLSTNAEGLRFVKVRMRTTKIPQIGDKFASRHG 600

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGT 1293
            QKG IG+   QEDMPF   G+ PD+I+NPH  PSRMT+  LIE L  K   + G   + T
Sbjct: 601  QKGTIGITYRQEDMPFTSEGMVPDLIINPHAIPSRMTIAHLIECLLSKVSSLRGFEGDAT 660

Query: 1294 AFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKI 1351
             F    +  V   L  HGY  +G ++ Y+G TG+ L   ++ GP YYQ+L+HMV DKI
Sbjct: 661  PFTEVTVDSVSRLLREHGYQSRGFEVMYNGHTGKKLVTQVFLGPTYYQRLRHMVDDKI 718



 Score =  111 bits (278), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 91/151 (60%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++   +TN L  ++ TGNW  ++     + GV+QVL+R ++ S L  + R N+
Sbjct: 46  EFNMTLAVKSTHLTNGLRYSLATGNWGDQKKAASVKAGVSQVLNRYTFASTLSHLRRTNT 105

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT     + ++  M  
Sbjct: 106 PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIVDFMIQ 165

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
             +E +  +  E L+SP    +FVNG+  G+
Sbjct: 166 RNMEVLEEY--EPLNSPNATKIFVNGVWVGV 194



 Score = 90.9 bits (224), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 59/100 (59%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 354 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 399

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
            + R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 400 YEQRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 439



 Score = 42.4 bits (98), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 14/70 (20%)

Query: 500 DDRDYYGNKRLELAGSLLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVS 545
           DDRD++G KRL+LAG LL+ +F   F +   ++           KE N++  V   +L +
Sbjct: 1   DDRDHFGKKRLDLAGPLLASLFRGTFNKLTKDVYKYLQKCVENNKEFNMTLAVKSTHLTN 60

Query: 546 GWWFELKYGN 555
           G  + L  GN
Sbjct: 61  GLRYSLATGN 70


>gi|357438193|ref|XP_003589372.1| DNA-directed RNA polymerase [Medicago truncatula]
 gi|355478420|gb|AES59623.1| DNA-directed RNA polymerase [Medicago truncatula]
          Length = 1213

 Score =  214 bits (544), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 110/270 (40%), Positives = 166/270 (61%), Gaps = 19/270 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 739  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 798

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L +R+ +           ++ 
Sbjct: 799  RQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR---------DEEKK 849

Query: 1034 LGPLLEADTRKPV------YRHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            +G L++ D  +P        RH +   LD DG+  PG ++    V++ K+ P        
Sbjct: 850  MGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPLSQEEQQG 909

Query: 1085 MATPEYK-EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1143
             A    K +  +S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQK
Sbjct: 910  QAARYSKRDHSISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQK 969

Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G +G+   QEDMP+   GI PDII+NPH +
Sbjct: 970  GTVGMTYTQEDMPWTVEGITPDIIVNPHAI 999



 Score =  181 bits (460), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 86/184 (46%), Positives = 120/184 (65%)

Query: 1187 VSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQED 1246
            +S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   QED
Sbjct: 921  ISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 980

Query: 1247 MPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEE 1306
            MP+   GI PDII+NPH  PSRMT+G+LIE + GK     G   + T F    + ++ + 
Sbjct: 981  MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 1040

Query: 1307 LIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQP 1366
            L + GY  +G +  Y+G TG  L A I+ GP YYQ+LKHMV DKIH+R RGP  +LTRQP
Sbjct: 1041 LHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP 1100

Query: 1367 TGRR 1370
               R
Sbjct: 1101 AEGR 1104



 Score =  115 bits (288), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 62/149 (41%), Positives = 89/149 (59%), Gaps = 6/149 (4%)

Query: 192 MRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKV 251
           ++  TIT+ L  ++ TGNW        R GV+QVL+RL+Y S L  + R+NS   +  K+
Sbjct: 443 IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKL 502

Query: 252 SGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAM 311
           + PR L  SQWGM+CP++TPEG+ACGLVKNLALM +IT  +    +L+ +   G E+  +
Sbjct: 503 AKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEV 562

Query: 312 FN---GEELSS---PGVYLVFVNGILAGI 334
                 +E+S    P    +FVNG   GI
Sbjct: 563 LVISFIKEISPAVIPQATKIFVNGCWMGI 591



 Score =  101 bits (251), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 56/141 (39%), Positives = 79/141 (56%), Gaps = 24/141 (17%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVS-----ESGIRP-----GVTTHLEIAPFTLLGVCA 741
           + D + +G IEY+D  E   + I+++     ++ + P        TH EI P  +LGVCA
Sbjct: 678 WHDLVSKGFIEYIDTEEEETTMISMTINDLVQARLNPEEAYSDTYTHCEIHPSLILGVCA 737

Query: 742 GIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYA 801
            I              +P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y 
Sbjct: 738 SI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYP 783

Query: 802 QRPMVESKTIRITNFHKLPAG 822
           Q+P+V ++ +   +F +LPAG
Sbjct: 784 QKPLVTTRAMEHLHFRQLPAG 804



 Score = 57.4 bits (137), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 57/121 (47%), Gaps = 14/121 (11%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           K+  +  A+D L    + H+ V       KA Y   +I R++L        DDRD+YGNK
Sbjct: 340 KEKRIKYAKDILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNK 399

Query: 509 RLELAGSLLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYG 554
           RL+LAG LL  +F  +F++   ++           K+ NL   +    + SG  + L  G
Sbjct: 400 RLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATG 459

Query: 555 N 555
           N
Sbjct: 460 N 460



 Score = 50.4 bits (119), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 19/85 (22%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVR------------- 387
           + KP + ES   T    P   RLR+LTYSAP+ VD+     S+RV++             
Sbjct: 98  LSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV-----SKRVIKKGHDGEEVTETQD 152

Query: 388 -SDLVIGRMPIMLQSSKCVLRNKTE 411
            + + IG++PIML+SS C L   +E
Sbjct: 153 FTKVFIGKVPIMLRSSYCTLYQNSE 177


>gi|52699774|gb|AAU86949.1| DNA-dependent RNA polymerase II second largest subunit [Acarospora
            complanata]
          Length = 730

 Score =  214 bits (544), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 106/264 (40%), Positives = 166/264 (62%), Gaps = 5/264 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMG QAMG    N + R+DT+   L Y Q+P+  ++++    F
Sbjct: 380  IIPFPDHNQSPRNTYQSAMGXQAMGXXXXNYEQRMDTMANILYYPQKPLATTRSMEFLKF 439

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR+     K+      ++ 
Sbjct: 440  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSVVEQF 499

Query: 1034 LGPLLEADTRKPVY-RHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAISMATPEY- 1090
              P + +DT K  +  +  LD DGIVAPG ++    +++ K+ P       +   T  + 
Sbjct: 500  EKP-MRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKLHI 558

Query: 1091 -KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             ++V    + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHGQKG IG+ 
Sbjct: 559  KRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGIT 618

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
              QEDMPF + GI PD+I+NPH +
Sbjct: 619  YRQEDMPFTKEGIVPDLIINPHAI 642



 Score =  160 bits (405), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 88/240 (36%), Positives = 134/240 (55%), Gaps = 13/240 (5%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESG-ICPDIIMNPHGL 1173
            ++ Q  +P   D    +HG        G++  G+ V  ED+   ++  I PD       L
Sbjct: 495  VVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDA----EEL 550

Query: 1174 KGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
                ++   ++V    + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHG
Sbjct: 551  GQRTKLHIKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHG 610

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGT 1293
            QKG IG+   QEDMPF + GI PD+I+NPH  PSRMT+  LIE    K   + G   + T
Sbjct: 611  QKGTIGITYRQEDMPFTKEGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDAT 670

Query: 1294 AFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHA 1353
             F    +  V + L  HGY  +G ++ Y+G TG  L A ++ GP YYQ+L+HMV DKI A
Sbjct: 671  PFTEITVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIXA 730



 Score =  113 bits (282), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 90/151 (59%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW   ++    + GV+QVL+R ++ S L  + R N+
Sbjct: 43  EFNLTLGVKSTTITNGLKYSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNT 102

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM +I+     + ++  M  
Sbjct: 103 PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYISVGTPSEPIIDFMVQ 162

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
             +E +  +  E   SP    VFVNG+  G+
Sbjct: 163 RNMEVLEEY--EPQRSPNATKVFVNGVWVGV 191



 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/100 (42%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMG QAMG    N
Sbjct: 364 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGXQAMGXXXXN 409

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
            + R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 410 YEQRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 449


>gi|45545339|gb|AAS67517.1| DNA-dependent RNA polymerase II second largest subunit, partial
            [Alyxoria varia]
          Length = 894

 Score =  214 bits (544), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 110/284 (38%), Positives = 167/284 (58%), Gaps = 5/284 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R++T+M  L Y Q+P+  ++++    F
Sbjct: 552  IIPFPDHNQSPRNTYQSAMGKQAMGVALTNYALRMETMMNVLYYPQKPLATTRSMEYLKF 611

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR      K+      ++ 
Sbjct: 612  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTEQEKRIGVNVLEQF 671

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEY--- 1090
              P+     R     +  LD DG+VAPG ++    +++ K+ P I+  A  +        
Sbjct: 672  EKPMRADTLRLKGGTYDKLDDDGVVAPGVRVSGDDIIIGKTAP-IAADAKELGQKTTMHT 730

Query: 1091 -KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             ++V    + +    +++VL ++N+E    +K+  R T+ P+IGDKF+SRHGQKG IG+ 
Sbjct: 731  KRDVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTTKVPQIGDKFASRHGQKGTIGIT 790

Query: 1150 VEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSV 1193
              QEDMPF   G+ PDII+NPH +     I    E  +S  GS+
Sbjct: 791  YRQEDMPFTREGLVPDIIINPHAIPSRMTIAHLVECLLSKVGSL 834



 Score =  153 bits (386), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 70/163 (42%), Positives = 103/163 (63%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    + +    +++VL ++N+E    +K+  R T+ P+IGDKF+SRHGQKG IG+  
Sbjct: 732  RDVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTTKVPQIGDKFASRHGQKGTIGITY 791

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   G+ PDII+NPH  PSRMT+  L+E L  K G +EG   + T F    +  
Sbjct: 792  RQEDMPFTREGLVPDIIINPHAIPSRMTIAHLVECLLSKVGSLEGKEGDATPFTDVTVES 851

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKH 1345
            V + L  +GY  +G ++ Y+G TG+ L A I+ GP YYQ+L+H
Sbjct: 852  VSKLLANNGYQQRGFEVMYNGHTGKKLRAQIFLGPTYYQRLRH 894



 Score =  107 bits (266), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 51/153 (33%), Positives = 91/153 (59%), Gaps = 3/153 (1%)

Query: 183 AAQFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRI 241
           + +F++   ++   ITN L  ++ TGNW   ++    + GV+QVL+R +Y S L  + R 
Sbjct: 225 STEFNVQMAVKASVITNGLKYSLATGNWGDQKKAASAKAGVSQVLNRYTYASTLSHLRRT 284

Query: 242 NSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIM 301
           N+   +  K++ PR L  + WG++CP++TPEG+ACGLVKNL+LM +++  ++   +   M
Sbjct: 285 NTPVGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSESTPITDFM 344

Query: 302 YNIGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
               +E +  +  + + +P    VFVNG+  G+
Sbjct: 345 GQRNMELLEEY--DPVVNPTATKVFVNGVWVGV 375



 Score = 88.6 bits (218), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 59/100 (59%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 536 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVALTN 581

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R++T+M  L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 582 YALRMETMMNVLYYPQKPLATTRSMEYLKFRELPAGQNAI 621



 Score = 47.4 bits (111), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 40/77 (51%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           ARD +    + HI         KA +   MI R++  +      DDRD++G KRL+LAG 
Sbjct: 138 ARDIMQREFLPHISQKEGSDTRKAFFFGYMIHRLLQCVLGRREEDDRDHFGKKRLDLAGP 197

Query: 516 LLSLMFEDVFKRFNSEL 532
           L++ +F  +F +   ++
Sbjct: 198 LIANLFRVLFLKLTKDV 214


>gi|379005506|ref|YP_005261178.1| DNA-directed RNA polymerase subunit B [Pyrobaculum oguniense TE7]
 gi|375160959|gb|AFA40571.1| DNA-directed RNA polymerase subunit B [Pyrobaculum oguniense TE7]
          Length = 1127

 Score =  214 bits (544), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 105/266 (39%), Positives = 167/266 (62%), Gaps = 10/266 (3%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++PY  HNQ+PRN Y+ AM KQ++G    N   ++D+  + L Y +RP+V ++ + +  +
Sbjct: 661  IIPYLEHNQSPRNQYEAAMAKQSLGLPQSNFLYKLDSRGHMLYYPERPIVTTRGLELVGY 720

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             K PAGQNA +A+++Y+GY+IEDA+I+NKAS++RG  R + YR  +   ++YP    D+I
Sbjct: 721  SKRPAGQNAVVALLTYTGYNIEDAVILNKASVERGMFRSVFYRTYETEEQRYPGGEEDKI 780

Query: 1034 LGPLLEADTRKPVYR----HRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMA--T 1087
              P    D+    YR    +  LD+DGI  P   +   +VL+ K+ P    + +      
Sbjct: 781  EIP----DSSVKGYRGPEAYSHLDEDGIAPPEVYVSSSEVLIGKTSPPRFYTTLETERIL 836

Query: 1088 PEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
             E ++  V+ +      +++V+++ + E   L+K+ LR+ R PE+GDKF+SRHGQKGV+G
Sbjct: 837  KERRDASVAVRRGEKGIVDRVIITESPEGNKLVKVRLRELRIPELGDKFASRHGQKGVVG 896

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            +++ QEDMPF E GI PDII+NPH L
Sbjct: 897  MLLRQEDMPFTEEGIVPDIIVNPHAL 922



 Score =  211 bits (538), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 100/192 (52%), Positives = 137/192 (71%)

Query: 1179 ITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVI 1238
            + E ++  V+ +      +++V+++ + E   L+K+ LR+ R PE+GDKF+SRHGQKGV+
Sbjct: 836  LKERRDASVAVRRGEKGIVDRVIITESPEGNKLVKVRLRELRIPELGDKFASRHGQKGVV 895

Query: 1239 GLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGT 1298
            G+++ QEDMPF E GI PDII+NPH  PSRMTV +L+E +AGK G   GN  + T F G 
Sbjct: 896  GMLLRQEDMPFTEEGIVPDIIVNPHALPSRMTVAQLLESMAGKVGAATGNLVDATPFEGV 955

Query: 1299 KLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGP 1358
            K  D+++ L++ GY + GK++ YSGITGE L A I+ G VYYQKL HMV DKIHAR+RGP
Sbjct: 956  KEEDLRKLLLKLGYKWDGKEVMYSGITGERLVADIFIGIVYYQKLHHMVADKIHARARGP 1015

Query: 1359 RVVLTRQPTGRR 1370
              +LTRQPT  R
Sbjct: 1016 VQILTRQPTEGR 1027



 Score = 97.4 bits (241), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 57/152 (37%), Positives = 81/152 (53%), Gaps = 8/152 (5%)

Query: 192 MRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKV 251
           +R D IT  +  A+ TGNW        + GV+Q+L R +Y+S L  + R+ S   +T+  
Sbjct: 406 VRPDIITERVRQALATGNWV-----GGKTGVSQILDRTNYLSTLSYLRRVVSSLSRTQPH 460

Query: 252 SGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAM 311
              R L  +QWG LC  +TPEG+  GLVKNLAL+  ITT  DE  + +++   G+  I  
Sbjct: 461 FEARDLHPTQWGRLCAVETPEGQNVGLVKNLALLAEITTGVDENEVEQMLLQQGVVPILK 520

Query: 312 FNGEELSSPGVYLVFVNGILAGITCHHKEVCK 343
              E +    VYL   NG L GI    +E+ K
Sbjct: 521 AREEGIRGAEVYL---NGRLIGIHPEPEELVK 549



 Score = 92.0 bits (227), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/135 (35%), Positives = 74/135 (54%), Gaps = 15/135 (11%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKR 751
           +DD L  G +EYLD +E  ++HIAV   G     T H+EI P ++LG  A I        
Sbjct: 611 WDDLLKMGVVEYLDADEEENAHIAVDPEGDLSNYT-HVEIIPSSILGAIASI-------- 661

Query: 752 FHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTI 811
                 +PY  HNQ+PRN Y+ AM KQ++G    N   ++D+  + L Y +RP+V ++ +
Sbjct: 662 ------IPYLEHNQSPRNQYEAAMAKQSLGLPQSNFLYKLDSRGHMLYYPERPIVTTRGL 715

Query: 812 RITNFHKLPAGKCQI 826
            +  + K PAG+  +
Sbjct: 716 ELVGYSKRPAGQNAV 730



 Score = 42.4 bits (98), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 33/67 (49%)

Query: 340 EVCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIML 399
           EV  P I+ES        P E RLR+ TYSAP+ +        +        IG +PIM+
Sbjct: 78  EVGWPRIKESDGSESLIYPMEARLRNATYSAPLYLTAVLYVDDEPYATETFYIGELPIMV 137

Query: 400 QSSKCVL 406
           +S +C L
Sbjct: 138 KSKRCNL 144


>gi|154151473|ref|YP_001405091.1| DNA-directed RNA polymerase subunit B' [Methanoregula boonei 6A8]
 gi|154000025|gb|ABS56448.1| DNA-directed RNA polymerase [Methanoregula boonei 6A8]
          Length = 604

 Score =  214 bits (544), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 106/262 (40%), Positives = 157/262 (59%), Gaps = 3/262 (1%)

Query: 915  VPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFH 974
            VP+P HN +PR T    M KQA+G    N + R DT  + L Y Q+P+  ++T  +    
Sbjct: 139  VPFPEHNASPRVTMGAGMVKQALGFAAANMKLRPDTRGHMLHYVQKPLTHTQTSELIGSD 198

Query: 975  KLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRIL 1034
              PAGQN  +A++SY GY+IEDALI NKAS+DRG GR   +R  +   ++YP    DRI 
Sbjct: 199  DRPAGQNFVVAILSYEGYNIEDALIFNKASIDRGLGRSHFFRTYEGEERRYPGGQIDRIE 258

Query: 1035 GPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAIS---MATPEYK 1091
             P  +         ++ LD+DG++ P   + E+ VL+ K+ P   +   S   +A  + +
Sbjct: 259  VPDEDVSGAHGAESYKNLDEDGVINPETIVAEKDVLIGKTSPPRFLEEPSGELIAVEKRR 318

Query: 1092 EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVE 1151
            +  V+ + +    ++ V+++     + L+K+  R  R PEIGDKF+SRHGQKGVIGLIV 
Sbjct: 319  DTSVTMRSNEHGIVDTVIITEGENSSRLVKVRTRDLRVPEIGDKFASRHGQKGVIGLIVN 378

Query: 1152 QEDMPFNESGICPDIIMNPHGL 1173
            QEDMPF ESG+ PD+++NPH +
Sbjct: 379  QEDMPFTESGLSPDLVINPHAI 400



 Score =  205 bits (522), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 94/194 (48%), Positives = 134/194 (69%)

Query: 1179 ITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVI 1238
            + + ++  V+ + +    ++ V+++     + L+K+  R  R PEIGDKF+SRHGQKGVI
Sbjct: 314  VEKRRDTSVTMRSNEHGIVDTVIITEGENSSRLVKVRTRDLRVPEIGDKFASRHGQKGVI 373

Query: 1239 GLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGT 1298
            GLIV QEDMPF ESG+ PD+++NPH  PSRMT+G ++E++ GK G +EG     TAFGG 
Sbjct: 374  GLIVNQEDMPFTESGLSPDLVINPHAIPSRMTIGHMLEMIGGKVGSLEGRRINATAFGGE 433

Query: 1299 KLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGP 1358
               D++  L + GY++ G+++ Y G TG++ +A IY G +YYQKL HMV  K+HARSRGP
Sbjct: 434  SEADLRASLRKLGYSHTGREVMYDGYTGKSFKADIYIGVIYYQKLYHMVSSKMHARSRGP 493

Query: 1359 RVVLTRQPTGRRWK 1372
              VLTRQPT  R +
Sbjct: 494  VQVLTRQPTEGRAR 507



 Score = 77.0 bits (188), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 46/132 (34%), Positives = 65/132 (49%), Gaps = 15/132 (11%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKR 751
           F  F+  G IE++D  E  D  IA++ + I P   THLEI P  +LG+ A          
Sbjct: 88  FSSFVQRGLIEFVDAEEEEDLLIAMNPADITP-AHTHLEIDPSLILGIGAA--------- 137

Query: 752 FHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTI 811
                 VP+P HN +PR T    M KQA+G    N + R DT  + L Y Q+P+  ++T 
Sbjct: 138 -----HVPFPEHNASPRVTMGAGMVKQALGFAAANMKLRPDTRGHMLHYVQKPLTHTQTS 192

Query: 812 RITNFHKLPAGK 823
            +      PAG+
Sbjct: 193 ELIGSDDRPAGQ 204


>gi|52699835|gb|AAU86979.1| DNA-dependent RNA polymerase II second largest subunit [Maronea
            chilensis]
          Length = 718

 Score =  214 bits (544), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 102/263 (38%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTY  AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 370  IIPFPDHNQSPRNTYXSAMGKQAMGVYLTNFDQRMDTMANILYYPQKPLATTRSMEFLKF 429

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR  +   K+      ++ 
Sbjct: 430  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYQDQEKRIGMNVVEQF 489

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTIS-VSAISMATPEY-- 1090
              P+     +  +  +  +D DGIVAPG ++    +++ K+ P  +    +   T  +  
Sbjct: 490  EKPMRSDTLKLKMGTYDKIDADGIVAPGSRVSGEDIIIGKTAPMAADAEELGQRTKLHIK 549

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    + +    +++VL ++NSE    +K+ +R T+ P+IGDKF+SRHGQKG IG+  
Sbjct: 550  RDVSTPLRSTESGIVDRVLYTTNSEGLKFVKVRMRTTKVPQIGDKFASRHGQKGTIGITY 609

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   G+ PD+I+NPH +
Sbjct: 610  RQEDMPFTSEGVVPDLIINPHAI 632



 Score =  155 bits (392), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 72/169 (42%), Positives = 103/169 (60%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    + +    +++VL ++NSE    +K+ +R T+ P+IGDKF+SRHGQKG IG+  
Sbjct: 550  RDVSTPLRSTESGIVDRVLYTTNSEGLKFVKVRMRTTKVPQIGDKFASRHGQKGTIGITY 609

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   G+ PD+I+NPH  PSRMT+  LIE    K   + G   + T F    +  
Sbjct: 610  RQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTDVTVDS 669

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKI 1351
            V   L  HGY  +G ++ Y+G TG  L A ++ GP YYQ+L+HMV D I
Sbjct: 670  VSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDXI 718



 Score =  110 bits (274), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 53/151 (35%), Positives = 91/151 (60%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRR-FKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++ +TIT+ L  ++ TGNW+ ++     + GV+QVL+R ++ S L  + R N+
Sbjct: 42  EFNLQLAVKSNTITSGLRYSLSTGNWSDQKNAATAKAGVSQVLNRYTFASTLSHLRRTNT 101

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM +++       +L  +  
Sbjct: 102 PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYVSVGTPSDPILDFLVQ 161

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
             +E +  +  E   SP    VFVNG+  G+
Sbjct: 162 RNMEVLEEY--EPQRSPNATKVFVNGVWVGV 190



 Score = 87.0 bits (214), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 42/100 (42%), Positives = 57/100 (57%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTY  AMGKQAMG    N
Sbjct: 354 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYXSAMGKQAMGVYLTN 399

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 400 FDQRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 439


>gi|300394676|gb|ADK11876.1| DNA-directed RNA polymerase II subunit two, partial [Athelia
            epiphylla]
          Length = 653

 Score =  214 bits (544), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 105/263 (39%), Positives = 160/263 (60%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 349  IIPFPDHNQSPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKF 408

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 409  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSVDRGLFRSIYYRSYMDLEKKSGIQQLEEF 468

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  E   R     +  ++ DG++APG  +    +++ K+ P    S        T   
Sbjct: 469  EKPTRENTLRMKHGTYDKIEDDGLIAPGTGVSGEDIIIGKTAPIPPDSEELGQRTRTHTR 528

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ +R TR P+ GDKF+SRHGQKG +G+  
Sbjct: 529  RDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRATRIPQTGDKFASRHGQKGTVGITY 588

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 589  RQEDMPFTAEGIVPDIIINPHAI 611



 Score =  119 bits (297), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 54/113 (47%), Positives = 74/113 (65%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++NSE    +K+ +R TR P+ GDKF+SRHGQKG +G+  
Sbjct: 529  RDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRATRIPQTGDKFASRHGQKGTVGITY 588

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAF 1295
             QEDMPF   GI PDII+NPH  PSRMT+G LIE L  K   + GN  + T F
Sbjct: 589  RQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLIECLLSKVATLIGNEGDATPF 641



 Score =  111 bits (277), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 91/151 (60%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 43  EFNLSLAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT 102

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM+ I+  +    +++ +  
Sbjct: 103 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSLSAPVIEFLEE 162

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E +        SS     VFVNG+  G+
Sbjct: 163 WGLESL---EENAHSSTPCTKVFVNGVWMGV 190



 Score = 91.7 bits (226), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 48/121 (39%), Positives = 67/121 (55%), Gaps = 14/121 (11%)

Query: 706 VNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQ 765
           VN+G+    A  ++G      TH EI P  +LG+CA I              +P+P HNQ
Sbjct: 312 VNDGDFDPAARLKAGTNAHTWTHCEIHPSMILGICASI--------------IPFPDHNQ 357

Query: 766 APRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQ 825
           +PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  
Sbjct: 358 SPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNA 417

Query: 826 I 826
           I
Sbjct: 418 I 418


>gi|520507|gb|AAA50224.1| RNA polymerase II, second largest subunit, partial [Caenorhabditis
            elegans]
          Length = 859

 Score =  214 bits (544), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 108/266 (40%), Positives = 168/266 (63%), Gaps = 9/266 (3%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DTL + L Y Q+P+V ++++    F
Sbjct: 517  IIPFPDHNQSPRNTYQSAMGKQAMGVYTTNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRF 576

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
            ++LPAG NA +A++SYSGY+ ED++IMN +++DRG  R + YR+ +       N   + I
Sbjct: 577  NELPAGINAIVAILSYSGYNQEDSVIMNNSAIDRGLFRSVFYRSYRDNEANLDNANEELI 636

Query: 1034 LGPLLE--ADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKS--MPTI--SVSAISMAT 1087
              P  E  +  R  +Y    LD+DGI++PG ++    V++ K+  +P I   + A     
Sbjct: 637  EKPTREKCSGMRHSLYDK--LDEDGIISPGMRVSGDDVIIGKTVALPDIDDDLDASGKKY 694

Query: 1088 PEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
            P+ ++     + S    +++V++S NS+    +K+ +R  R P+IGDKF+SRHGQKG +G
Sbjct: 695  PK-RDASTFLRSSETGIVDQVMLSLNSDGNKFVKIRMRSVRLPQIGDKFASRHGQKGTMG 753

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            ++  QEDMPF   G+ PDII+NPH +
Sbjct: 754  IMYRQEDMPFTAEGLTPDIIINPHAV 779



 Score =  150 bits (378), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 81/208 (38%), Positives = 122/208 (58%), Gaps = 10/208 (4%)

Query: 1142 QKGVI--GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEK 1199
            + G+I  G+ V  +D+   ++   PDI      L    +    ++     + S    +++
Sbjct: 657  EDGIISPGMRVSGDDVIIGKTVALPDI---DDDLDASGKKYPKRDASTFLRSSETGIVDQ 713

Query: 1200 VLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDII 1259
            V++S NS+    +K+ +R  R P+IGDKF+SRHGQKG +G++  QEDMPF   G+ PDII
Sbjct: 714  VMLSLNSDGNKFVKIRMRSVRLPQIGDKFASRHGQKGTMGIMYRQEDMPFTAEGLTPDII 773

Query: 1260 MNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQE---ELIRHGYNYQG 1316
            +NPH  PSRMT+G LIE L GK    +G   + T F  T  V+VQ+    L  +GY+ +G
Sbjct: 774  INPHAVPSRMTIGHLIECLQGKLSANKGEIGDATPFNDT--VNVQKISGLLCEYGYHLRG 831

Query: 1317 KDIFYSGITGEALEAYIYSGPVYYQKLK 1344
             ++ Y+G TG+ L   I+ GP YYQ+LK
Sbjct: 832  NEVMYNGHTGKKLTTQIFFGPTYYQRLK 859



 Score =  111 bits (277), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 67/171 (39%), Positives = 99/171 (57%), Gaps = 14/171 (8%)

Query: 174 ADKIIPKIKAAQFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYI 232
           A K I K      D+   ++  TIT  LT ++ TGNW   ++    R GV+QVL+RL+Y 
Sbjct: 226 AQKYINKNDDFALDVC--VKTSTITRGLTYSLATGNWGDQKKAHQSRAGVSQVLNRLTYT 283

Query: 233 SGLGMMTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTEN 292
           + L  + R NS   +  K++ PR L  +QWGM+CP++TPEG+A GLVKNLALM +I+  +
Sbjct: 284 ATLSHLRRANSPIGREGKLAKPRQLHNTQWGMVCPAETPEGQAVGLVKNLALMAYISVGS 343

Query: 293 DEKNMLKIMYNIGIEHIAMFNGEELSSPGVY---LVFVNGILAGITCHHKE 340
             + +L+ +     E  +M N EE+S   +     +FVNG   GI   H+E
Sbjct: 344 LPEPILEFL-----EEWSMENLEEVSPSAIADATKIFVNGAWVGI---HRE 386



 Score =  100 bits (250), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 55/135 (40%), Positives = 75/135 (55%), Gaps = 18/135 (13%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPG----VTTHLEIAPFTLLGVCAGIELLQ 747
           + D +  G +E +D  E   S IA+    +R G      TH EI P  +LGVCA I    
Sbjct: 462 WSDLVGGGVVELIDSMEEETSMIAMMPEDLRSGGYCDTHTHCEIHPAMILGVCASI---- 517

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                     +P+P HNQ+PRNTYQ AMGKQAMG    N   R+DTL + L Y Q+P+V 
Sbjct: 518 ----------IPFPDHNQSPRNTYQSAMGKQAMGVYTTNFHVRMDTLAHVLYYPQKPLVT 567

Query: 808 SKTIRITNFHKLPAG 822
           ++++    F++LPAG
Sbjct: 568 TRSMEYLRFNELPAG 582



 Score = 60.5 bits (145), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 46/80 (57%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           AR+ L    + H+ V       KA ++  M+ R++LA      LDDRD+ GNKRL+LAG 
Sbjct: 146 AREILQKELLPHVGVSEHCETKKAFFIGYMVHRLLLAALGRRELDDRDHIGNKRLDLAGP 205

Query: 516 LLSLMFEDVFKRFNSELKET 535
           LL+ +F  +F+    E++ T
Sbjct: 206 LLAFLFRSLFRNLLKEMRMT 225


>gi|68131852|gb|AAY85204.1| RNA polymerase II second largest subunit [Dillenia suffruticosa]
          Length = 868

 Score =  214 bits (544), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 108/270 (40%), Positives = 168/270 (62%), Gaps = 19/270 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 608  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHF 667

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG N+ +A+  YSGY+ ED++IMN++S+DRGF R L +R+ +           ++ 
Sbjct: 668  RQLPAGINSIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR---------DEEKK 718

Query: 1034 LGPLLEADTRKPV------YRHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            +G L++ D  +P        RH +   LD DG+  PG ++    V++ K+ P     A  
Sbjct: 719  MGTLIKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIAQDDAQG 778

Query: 1085 MATP-EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1143
            +++    ++   S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQK
Sbjct: 779  VSSRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQK 838

Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G +G+   QEDMP+   GI PDII+NPH +
Sbjct: 839  GTVGMTYTQEDMPWTVEGITPDIIVNPHAI 868



 Score =  114 bits (284), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 61/141 (43%), Positives = 84/141 (59%), Gaps = 8/141 (5%)

Query: 197 ITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVSGPRS 256
           IT+ L  ++ TGNW        R GV+QVL+RL+Y S L  + R+NS   +  K++ PR 
Sbjct: 335 ITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYSSTLSHLRRLNSPIGREGKLAKPRQ 394

Query: 257 LQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMFNGEE 316
           L  S WGM+CP++TPEG+ACGLVKNLALM +IT  +    +L+ +     E  +  N EE
Sbjct: 395 LHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFL-----EEWSTENFEE 449

Query: 317 LSS---PGVYLVFVNGILAGI 334
           +S    P    +FVNG   GI
Sbjct: 450 ISPAVIPQATKIFVNGCWVGI 470



 Score =  100 bits (248), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 63/172 (36%), Positives = 86/172 (50%), Gaps = 40/172 (23%)

Query: 677 RPTFLNMHQFLGFKRFD----------------DFLYEGKIEYLDVNEGNDSHIAVS--- 717
           RP F+   Q L  K+ D                D + +G IEY+D  E   + I+++   
Sbjct: 516 RPLFIVEKQRLLIKKKDIRALQQRESPEEGGWHDLVAKGFIEYVDTEEEETTMISMTIND 575

Query: 718 --ESGIRP-----GVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNT 770
              + + P        TH EI P  +LGVCA I              +P+P HNQ+PRNT
Sbjct: 576 LVSARLNPEEAYSDTYTHCEIHPSLILGVCASI--------------IPFPDHNQSPRNT 621

Query: 771 YQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAG 822
           YQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F +LPAG
Sbjct: 622 YQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG 673



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/78 (47%), Positives = 54/78 (69%)

Query: 1187 VSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQED 1246
             S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   QED
Sbjct: 790  TSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 849

Query: 1247 MPFNESGICPDIIMNPHG 1264
            MP+   GI PDII+NPH 
Sbjct: 850  MPWTVEGITPDIIVNPHA 867



 Score = 54.3 bits (129), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 14/114 (12%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A++ L    + H+ V       KA Y   +I R++L        DDRD+YGNKRL+LAG 
Sbjct: 234 AKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP 293

Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLSGVVN---LVSGWWFELKYGN 555
           LL  +F  +F++   ++           K+ NL   +    + SG  + L  GN
Sbjct: 294 LLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKPITSGLKYSLATGN 347



 Score = 43.9 bits (102), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 19/68 (27%)

Query: 358 PHECRLRDLTYSAPITVDIEYTRGSQRVVR--------------SDLVIGRMPIMLQSSK 403
           P   RLR+LTYSAP+ VD+     ++R+++              + + IG++PIML+SS 
Sbjct: 7   PKAARLRNLTYSAPLYVDV-----TKRIIKKGHDCEEVTETQDFAKVFIGKVPIMLRSSY 61

Query: 404 CVLRNKTE 411
           C L   +E
Sbjct: 62  CTLYQNSE 69


>gi|119644141|gb|ABL85608.1| RNA polymerase II second largest subunit [Punctelia rudecta]
          Length = 718

 Score =  214 bits (544), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 107/266 (40%), Positives = 163/266 (61%), Gaps = 9/266 (3%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N + R+DT+   L Y Q+P+  ++++    F
Sbjct: 370  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYEQRMDTMANILYYPQKPLATTRSMEFLKF 429

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR      K+      ++ 
Sbjct: 430  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQEKRIGMSVVEQF 489

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKEV 1093
              P+     R     +  LD DG+VAPG ++    +++ K+ P I+  A  +   +  ++
Sbjct: 490  EKPMRSDTLRLKHGTYDKLDDDGLVAPGVRVSGEDIIIGKTAP-IAPDAEELG--QRTKL 546

Query: 1094 PVSYKGSVP------SYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
             V    S P        +++VL+S+N+E    +K+ +R T+ P+IGDKF+SRHGQKG IG
Sbjct: 547  HVKRDTSTPLRSTENGIVDQVLLSTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIG 606

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            +   QEDMPF   G+ PD+I+NPH +
Sbjct: 607  ITYRQEDMPFTSEGMVPDLIINPHAI 632



 Score =  157 bits (398), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 86/238 (36%), Positives = 131/238 (55%), Gaps = 13/238 (5%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESG-ICPDIIMNPHGL 1173
            ++ Q  +P   D    +HG        G++  G+ V  ED+   ++  I PD       L
Sbjct: 485  VVEQFEKPMRSDTLRLKHGTYDKLDDDGLVAPGVRVSGEDIIIGKTAPIAPDA----EEL 540

Query: 1174 KGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
                ++   ++     + +    +++VL+S+N+E    +K+ +R T+ P+IGDKF+SRHG
Sbjct: 541  GQRTKLHVKRDTSTPLRSTENGIVDQVLLSTNAEGLRFVKVRMRTTKIPQIGDKFASRHG 600

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGT 1293
            QKG IG+   QEDMPF   G+ PD+I+NPH  PSRMT+  LIE L  K   + G   + T
Sbjct: 601  QKGTIGITYRQEDMPFTSEGMVPDLIINPHAIPSRMTIAHLIECLLSKVSSLRGFEGDAT 660

Query: 1294 AFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKI 1351
             F    +  V   L  HGY  +G ++ Y+G TG+ L   ++ GP YYQ+L+HMV DKI
Sbjct: 661  PFTEVTVDSVSRLLREHGYQSRGFEVMYNGHTGKKLVTQVFLGPTYYQRLRHMVDDKI 718



 Score =  111 bits (278), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 91/151 (60%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++   +TN L  ++ TGNW   ++    + GV+QVL+R ++ S L  + R N+
Sbjct: 46  EFNMTLAVKSTHLTNGLRYSLATGNWGDQKKAASVKAGVSQVLNRYTFASTLSHLRRTNT 105

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT     + ++  M  
Sbjct: 106 PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIVDFMIQ 165

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
             +E +  +  E L+SP    +FVNG+  G+
Sbjct: 166 RNMEVLEEY--EPLNSPNATKIFVNGVWVGV 194



 Score = 91.3 bits (225), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 59/100 (59%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 354 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 399

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
            + R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 400 YEQRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 439



 Score = 42.0 bits (97), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 14/70 (20%)

Query: 500 DDRDYYGNKRLELAGSLLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVS 545
           DDRD++G KRL+LAG LL+ +F   F +   ++           KE N++  V   +L +
Sbjct: 1   DDRDHFGKKRLDLAGPLLASLFRGTFNKLTKDVYKYLQKCVENNKEFNMTLAVKSTHLTN 60

Query: 546 GWWFELKYGN 555
           G  + L  GN
Sbjct: 61  GLRYSLATGN 70


>gi|6606091|gb|AAF19058.1|AF107786_1 DNA-dependent RNA polymerase II RPB140, partial [Neolecta vitellina]
          Length = 930

 Score =  214 bits (544), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 102/263 (38%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DT+   L Y Q+P+  ++++    F
Sbjct: 555  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYQLRMDTMANILYYPQKPLATTRSMEYLKF 614

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
              LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR      K+   Q  +  
Sbjct: 615  RDLPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSMFYRCYNDQEKKIGMQVMEEF 674

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMP-TISVSAISMATPEY-- 1090
              P  +   R     +  L++DG++APG ++    +++ K+ P +     +   T  +  
Sbjct: 675  EKPTRQTTLRLKHGTYEKLEEDGLIAPGIRVSGEDIIIGKTAPISPDTQELGQRTSHHTK 734

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    + +    ++ V+V++N E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 735  RDVSTPLRSTENGIVDHVVVTTNQEGLKFVKVRMRSTRVPQIGDKFASRHGQKGTIGITY 794

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
              EDMPF+  G+ PD+I+NPH +
Sbjct: 795  RHEDMPFSAQGVVPDLIINPHAI 817



 Score =  179 bits (455), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 85/188 (45%), Positives = 119/188 (63%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    + +    ++ V+V++N E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 735  RDVSTPLRSTENGIVDHVVVTTNQEGLKFVKVRMRSTRVPQIGDKFASRHGQKGTIGITY 794

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
              EDMPF+  G+ PD+I+NPH  PSRMTV  LIE    K   M G   + T F    +  
Sbjct: 795  RHEDMPFSAQGVVPDLIINPHAIPSRMTVAHLIECQLSKVSAMGGYEGDATPFTEVTVEQ 854

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
            V ++L   G+  +G ++ Y+G TG+ L A ++ GP YYQ+LKHMV DKIHAR+RGP  +L
Sbjct: 855  VSQQLRNQGFQSRGFEVMYNGHTGKKLMAQVFLGPTYYQRLKHMVDDKIHARARGPVQIL 914

Query: 1363 TRQPTGRR 1370
            TRQP   R
Sbjct: 915  TRQPVEGR 922



 Score =  112 bits (280), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 53/151 (35%), Positives = 92/151 (60%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TIT  L  ++ TGNW   ++    + GV+QVL+R ++ S L  + R N+
Sbjct: 238 EFNLTLAVKAPTITQGLKYSLATGNWGEQKKAAQAKVGVSQVLNRYTFASTLSHLRRTNT 297

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  S WG++CP++TPEG+ACGLVKNLALM++I+       +++ +  
Sbjct: 298 PIGRDGKIAKPRQLHNSHWGLVCPAETPEGQACGLVKNLALMSYISVGGPSAPLIEFLEE 357

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E +  ++    S+P    +FVNG+  G+
Sbjct: 358 WGMESLEDYSPS--STPNTTKIFVNGVWLGV 386



 Score = 93.2 bits (230), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 76/163 (46%), Gaps = 42/163 (25%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSE----------------------SGIRP------ 723
           F   +  G IEY+D  E   + IA++                       S + P      
Sbjct: 476 FSKLIENGIIEYIDAEEEETAMIAMTRKDLESWRKMKEGFQIEEEFDPASRVEPPPNPNI 535

Query: 724 GVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCI 783
            + TH EI P  +LGVCA I              +P+P HNQ+PRNTYQ AMGKQAMG  
Sbjct: 536 AMYTHCEIHPSMILGVCASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVF 581

Query: 784 GYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
             N Q R+DT+   L Y Q+P+  ++++    F  LPAG+  I
Sbjct: 582 LTNYQLRMDTMANILYYPQKPLATTRSMEYLKFRDLPAGQNAI 624



 Score = 54.3 bits (129), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 14/114 (12%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           AR+ +    + H+         KA +L  M+ R++L   +    DDRD++G KRL+LAG 
Sbjct: 149 AREIMQKELLPHVSQTEGYESRKAFFLGYMVHRLLLVALERREQDDRDHFGKKRLDLAGP 208

Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYGN 555
           LL+ +F  +FK+   ++           +E NL+  V    +  G  + L  GN
Sbjct: 209 LLANLFRMLFKKLYKDVYRYMQKCVENNREFNLTLAVKAPTITQGLKYSLATGN 262


>gi|89274904|gb|ABD65893.1| RNA polymerase II second largest subunit, partial [Spongipellis
            pachyodon]
          Length = 901

 Score =  214 bits (544), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 104/263 (39%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N  +R+DT+   L Y Q+P+  ++++    F
Sbjct: 526  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLSRMDTMANILYYPQKPLATTRSMEYLKF 585

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 586  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEF 645

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 646  EKPTRDTTLRMKHGTYDKLEDDGLIAPGTNVNGEDIIIGKTAPIPPDSEELGQRTRTHTR 705

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++N+E    +K+ +R TR P+IG KF+SRHGQKG IG+  
Sbjct: 706  RDVSTPLKSTESGIVDQVLITTNAEGQKFVKIGVRSTRVPQIGGKFASRHGQKGTIGITY 765

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDI++NPH +
Sbjct: 766  RQEDMPFTAEGITPDIVINPHAI 788



 Score =  186 bits (471), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 87/188 (46%), Positives = 121/188 (64%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++N+E    +K+ +R TR P+IG KF+SRHGQKG IG+  
Sbjct: 706  RDVSTPLKSTESGIVDQVLITTNAEGQKFVKIGVRSTRVPQIGGKFASRHGQKGTIGITY 765

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDI++NPH  PSRMT+G L+E L  K   + G   + T F    +  
Sbjct: 766  RQEDMPFTAEGITPDIVINPHAIPSRMTIGHLVECLLSKLATLTGQEGDATPFTELTVES 825

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
            V + L + GY  +G ++ Y G TG  L+A +Y GP YYQ+LKHMV DKIH+R+RGP  +L
Sbjct: 826  VSQYLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMVDDKIHSRARGPVQIL 885

Query: 1363 TRQPTGRR 1370
            TRQP   R
Sbjct: 886  TRQPVEGR 893



 Score =  110 bits (276), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 57/152 (37%), Positives = 93/152 (61%), Gaps = 6/152 (3%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKM-ERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++ +TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 224 EFNLSLAVKHNTITNGLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNT 283

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L    WGM+CP++TPEG+ACGLVKNL+LM+ I+  +    +++ +  
Sbjct: 284 PLGREGKIAKPRQLHNHHWGMVCPAETPEGQACGLVKNLSLMSCISVGSFSGPVIEFLEE 343

Query: 304 IGIEHIAMFNGEELSSPG-VYLVFVNGILAGI 334
            G+E +     E + SP     VFVNG+  G+
Sbjct: 344 WGLESLE----ENVHSPTPTTKVFVNGVWMGV 371



 Score = 90.1 bits (222), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 67/220 (30%), Positives = 100/220 (45%), Gaps = 51/220 (23%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVS------------------ESGIRPG--------- 724
           +DD + +G IE LD  E   + I ++                  ES   P          
Sbjct: 446 WDDMIKKGIIELLDAEEEETAMICMTPEDLEASRLAGAGMDQEDESEFDPSKRLRTTGSS 505

Query: 725 --VTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGC 782
               TH EI P  +LGVCA I              +P+P HNQ+PRNTYQ AMGKQAMG 
Sbjct: 506 IHTWTHCEIHPSMILGVCASI--------------IPFPDHNQSPRNTYQSAMGKQAMGI 551

Query: 783 IGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQISPGGAEELTARESCHE 842
              N  +R+DT+   L Y Q+P+  ++++    F +LPAG+  I    A    +  +  +
Sbjct: 552 YLTNFLSRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIV---AILCYSGYNQED 608

Query: 843 VLKIISFSISVAVFDSVWLG-----DVKQGVHQLSEEKEP 877
            + +   SI   +F S++       + K G+ QL E ++P
Sbjct: 609 SVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEFEKP 648



 Score = 60.1 bits (144), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 58/114 (50%), Gaps = 14/114 (12%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A++ L    + HI +       KA +   MI R++LA  +   LDDRD++G KRL+LAG 
Sbjct: 135 AQEILQKEMLPHISMAEGSESKKAYFFGYMIHRLLLAALERRELDDRDHFGKKRLDLAGP 194

Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYGN 555
           LL+ +F  +F++   ++           KE NLS  V    + +G  + L  GN
Sbjct: 195 LLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLSLAVKHNTITNGLKYSLATGN 248


>gi|103001922|gb|ABF71527.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
            flavum]
          Length = 701

 Score =  214 bits (544), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 107/265 (40%), Positives = 166/265 (62%), Gaps = 7/265 (2%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ  MGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 355  IIPFPDHNQSPRNTYQSXMGKQAMGVFLTNYDQRMDTMANILYYPQKPLATTRSMEFLKF 414

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR+     K+      ++ 
Sbjct: 415  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSVVEQF 474

Query: 1034 LGPLLEADTRKPVY-RHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPE--- 1089
              P + +DT K  +  +  LD DGIVAPG ++    +++ K+ P IS  A  +       
Sbjct: 475  EKP-MRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAP-ISPDAEELGQRTKLH 532

Query: 1090 -YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
              ++V    + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHGQKG IG+
Sbjct: 533  VKRDVSTPLRSTENGIVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGI 592

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
               QEDMPF + G+ PD+I+NPH +
Sbjct: 593  TYRQEDMPFTKEGVVPDLIINPHAI 617



 Score =  155 bits (393), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 84/236 (35%), Positives = 131/236 (55%), Gaps = 13/236 (5%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESG-ICPDIIMNPHGL 1173
            ++ Q  +P   D    +HG        G++  G+ V  ED+   ++  I PD       L
Sbjct: 470  VVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPISPD----AEEL 525

Query: 1174 KGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
                ++   ++V    + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHG
Sbjct: 526  GQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHG 585

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGT 1293
            QKG IG+   QEDMPF + G+ PD+I+NPH  PSRMT+  LIE    K   + G   + T
Sbjct: 586  QKGTIGITYRQEDMPFTKEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDAT 645

Query: 1294 AFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQD 1349
             F    +  V + L  HGY  +G ++ Y+G TG  L A ++ GP YYQ+L+HMV D
Sbjct: 646  PFTEVTVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDD 701



 Score =  114 bits (286), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 91/151 (60%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW   ++    + GV+QVL+R ++ S L  + R N+
Sbjct: 32  EFNLTLGVKSTTITNGLKYSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNT 91

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT     + +++ M  
Sbjct: 92  PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIEFMIQ 151

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
             +E +  +  E   SP    VFVNG+  G+
Sbjct: 152 RNMEVLEEY--EPQRSPNATKVFVNGVWVGV 180



 Score = 88.6 bits (218), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/100 (42%), Positives = 57/100 (57%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ  MGKQAMG    N
Sbjct: 339 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSXMGKQAMGVFLTN 384

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 385 YDQRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 424


>gi|70794976|gb|AAZ08462.1| RNA polymerase II second largest subunit [Platanus orientalis]
          Length = 923

 Score =  214 bits (544), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 109/270 (40%), Positives = 166/270 (61%), Gaps = 19/270 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 585  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHF 644

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L +R+ +           ++ 
Sbjct: 645  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR---------DEEKK 695

Query: 1034 LGPLLEADTRKPV------YRHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            +G L++ D  +P        RH +   LD DG+  PG ++    V++ K+ P        
Sbjct: 696  MGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQEEPQG 755

Query: 1085 MATP-EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1143
             A+    ++   S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQK
Sbjct: 756  QASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQK 815

Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G +G+   QEDMP+   GI PDII+NPH +
Sbjct: 816  GTVGMTYTQEDMPWTVEGITPDIIVNPHAI 845



 Score =  144 bits (363), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 68/157 (43%), Positives = 99/157 (63%)

Query: 1187 VSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQED 1246
             S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   QED
Sbjct: 767  TSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 826

Query: 1247 MPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEE 1306
            MP+   GI PDII+NPH  PSRMT+G+LIE + GK     G   + T F    + ++ + 
Sbjct: 827  MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 886

Query: 1307 LIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKL 1343
            L + GY  +G +  Y+G TG  L A I+ GP YYQ+L
Sbjct: 887  LHKCGYQMRGFETMYNGHTGRKLSAMIFLGPTYYQRL 923



 Score =  116 bits (291), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 62/146 (42%), Positives = 87/146 (59%), Gaps = 8/146 (5%)

Query: 192 MRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKV 251
           ++  TIT+ L  ++ TGNW        R GV+QVL+RL+Y S L  + R+NS   +  K+
Sbjct: 307 IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKL 366

Query: 252 SGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAM 311
           + PR L  S WGM+CP++TPEG+ACGLVKNLALM +IT  +    +L+ +     E  + 
Sbjct: 367 AKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFL-----EEWST 421

Query: 312 FNGEELSS---PGVYLVFVNGILAGI 334
            N EE+S    P    +FVNG   GI
Sbjct: 422 ENFEEISPAVIPQATKIFVNGCWVGI 447



 Score = 99.8 bits (247), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/141 (39%), Positives = 77/141 (54%), Gaps = 24/141 (17%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPG----------VTTHLEIAPFTLLGVCA 741
           + D + +G IEY+D  E   + I+++ + +               TH EI P  +LGVCA
Sbjct: 524 WHDLVAKGYIEYVDTEEEETTMISMTINDLVTARLNPEEAYSETYTHCEIHPSLILGVCA 583

Query: 742 GIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYA 801
            I              +P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y 
Sbjct: 584 SI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYP 629

Query: 802 QRPMVESKTIRITNFHKLPAG 822
           Q+P+V ++ +   +F +LPAG
Sbjct: 630 QKPLVTTRAMEHLHFRQLPAG 650



 Score = 56.2 bits (134), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 14/114 (12%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A++ L    + H+ V       KA Y   +I R++L        DDRD+YGNKRL+LAG 
Sbjct: 211 AKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP 270

Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYGN 555
           LL  +F  +F++   ++           KE NL   +    + SG  + L  GN
Sbjct: 271 LLGGLFRMLFRKLTRDVRAYVQKCVDNGKEVNLQFAIKAKTITSGLKYSLATGN 324


>gi|103001877|gb|ABF71525.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
            flavum]
          Length = 714

 Score =  214 bits (544), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 107/265 (40%), Positives = 166/265 (62%), Gaps = 7/265 (2%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMG QAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 364  IIPFPDHNQSPRNTYQSAMGXQAMGVFLTNYDQRMDTMANILYYPQKPLATTRSMEFLKF 423

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR+     K+      ++ 
Sbjct: 424  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSVVEQF 483

Query: 1034 LGPLLEADTRKPVY-RHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPE--- 1089
              P + +DT K  +  +  LD DGIVAPG ++    +++ K+ P IS  A  +       
Sbjct: 484  EKP-MRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAP-ISPDAEELGQRTKLH 541

Query: 1090 -YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
              ++V    + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHGQKG IG+
Sbjct: 542  VKRDVSTPLRSTENGIVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGI 601

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
               QEDMPF + G+ PD+I+NPH +
Sbjct: 602  TYRQEDMPFTKEGVVPDLIINPHAI 626



 Score =  157 bits (397), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 86/240 (35%), Positives = 133/240 (55%), Gaps = 13/240 (5%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESG-ICPDIIMNPHGL 1173
            ++ Q  +P   D    +HG        G++  G+ V  ED+   ++  I PD       L
Sbjct: 479  VVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPISPD----AEEL 534

Query: 1174 KGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
                ++   ++V    + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHG
Sbjct: 535  GQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHG 594

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGT 1293
            QKG IG+   QEDMPF + G+ PD+I+NPH  PSRMT+  LIE    K   + G   + T
Sbjct: 595  QKGTIGITYRQEDMPFTKEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDAT 654

Query: 1294 AFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHA 1353
             F    +  V + L  HGY  +G ++ Y+G TG  L A ++ GP YYQ+L+HMV  KI A
Sbjct: 655  PFTEVTVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVXXKIXA 714



 Score =  114 bits (286), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 91/151 (60%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW   ++    + GV+QVL+R ++ S L  + R N+
Sbjct: 41  EFNLTLGVKSTTITNGLKYSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNT 100

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT     + +++ M  
Sbjct: 101 PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIEFMIQ 160

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
             +E +  +  E   SP    VFVNG+  G+
Sbjct: 161 RNMEVLEEY--EPQRSPNATKVFVNGVWVGV 189



 Score = 88.2 bits (217), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/100 (42%), Positives = 57/100 (57%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMG QAMG    N
Sbjct: 348 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGXQAMGVFLTN 393

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 394 YDQRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 433


>gi|357216661|gb|AET71064.1| RNA polymerase II second largest subunit, partial [Datronia
            scutellata]
          Length = 674

 Score =  214 bits (544), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 105/263 (39%), Positives = 160/263 (60%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 345  IIPFPDHNQSPRNTYQSAMGKQAMGIFLTNFLVRMDTMANILYYPQKPLATTRSMEYLRF 404

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+      +  
Sbjct: 405  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVTQLEEF 464

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 465  EKPTRDTTLRMKHGTYDKLENDGLIAPGTNVNGEDIIIGKTAPIPPDSEELGQRTRTHTR 524

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++N+E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 525  RDVSTPLKSTEQGIVDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 584

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 585  RQEDMPFTAEGITPDIIINPHAI 607



 Score =  135 bits (341), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 65/149 (43%), Positives = 92/149 (61%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++N+E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 525  RDVSTPLKSTEQGIVDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 584

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 585  RQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLSKLATLIGNEGDATPFTNLTVET 644

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEA 1331
            V   L + GY  +G ++ Y G TG  L+A
Sbjct: 645  VSTFLRQKGYQSRGLEVMYHGHTGRKLQA 673



 Score =  110 bits (276), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 93/151 (61%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++ +TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 40  EFNLSLAVKHNTITNGLKYSLATGNWGDQKKSMSAKAGVSQVLNRYTYASTLSHLRRCNT 99

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNL+LM+ I+       +++ +  
Sbjct: 100 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSCISVGTLSAPVIEFLEE 159

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E  ++      S+P    VFVNG+  G+
Sbjct: 160 WGLE--SLEENAHASTPCTK-VFVNGVWMGV 187



 Score = 88.2 bits (217), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 76/163 (46%), Gaps = 42/163 (25%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVS----------ESGIRPG----------------- 724
           +D+ + EG IE LD  E     I ++           +G+ P                  
Sbjct: 266 WDNMIKEGVIELLDAEEEETVMICMTPEDLENSRLQAAGVDPEEDENVDPSARLKAPTYA 325

Query: 725 -VTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCI 783
              TH EI P  +LGVCA I              +P+P HNQ+PRNTYQ AMGKQAMG  
Sbjct: 326 HTWTHCEIHPSMILGVCASI--------------IPFPDHNQSPRNTYQSAMGKQAMGIF 371

Query: 784 GYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
             N   R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 372 LTNFLVRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNAI 414


>gi|103001677|gb|ABF71517.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
            chlorophanum]
          Length = 704

 Score =  214 bits (544), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 106/264 (40%), Positives = 165/264 (62%), Gaps = 5/264 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 364  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDQRMDTMANILYYPQKPLATTRSMEFLKF 423

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR+     K+      ++ 
Sbjct: 424  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSVVEQF 483

Query: 1034 LGPLLEADTRKPVY-RHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAISMATPEY- 1090
              P + +DT K  +  +  LD DGIVAPG ++    +++ K+ P       +   T  + 
Sbjct: 484  EKP-MRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKLHV 542

Query: 1091 -KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             ++V    + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHGQKG IG+ 
Sbjct: 543  KRDVSTPLRSTENGIVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGIT 602

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
              QEDMPF   G+ PD+I+NPH +
Sbjct: 603  YRQEDMPFTMEGVVPDLIINPHAI 626



 Score =  145 bits (365), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 80/230 (34%), Positives = 125/230 (54%), Gaps = 13/230 (5%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESG-ICPDIIMNPHGL 1173
            ++ Q  +P   D    +HG        G++  G+ V  ED+   ++  I PD       L
Sbjct: 479  VVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPD----AEEL 534

Query: 1174 KGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
                ++   ++V    + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHG
Sbjct: 535  GQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHG 594

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGT 1293
            QKG IG+   QEDMPF   G+ PD+I+NPH  PSRMT+  LIE    K   + G   + T
Sbjct: 595  QKGTIGITYRQEDMPFTMEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDAT 654

Query: 1294 AFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKL 1343
             F    +  V + L  HGY  +G ++ Y+G TG  L A ++ GP YYQ+L
Sbjct: 655  PFTEVTVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRL 704



 Score =  114 bits (286), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 91/151 (60%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW   ++    + GV+QVL+R ++ S L  + R N+
Sbjct: 41  EFNLTLGVKSTTITNGLKYSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNT 100

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT     + +++ M  
Sbjct: 101 PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIEFMIQ 160

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
             +E +  +  E   SP    VFVNG+  G+
Sbjct: 161 RNMEVLEEY--EPQRSPNATKVFVNGVWVGV 189



 Score = 90.5 bits (223), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 348 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 393

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 394 YDQRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 433


>gi|46411496|gb|AAS94318.1| RNA polymerase II [Ostropa barbara]
          Length = 719

 Score =  214 bits (544), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 106/264 (40%), Positives = 162/264 (61%), Gaps = 5/264 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 371  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDQRMDTMANILYYPQKPLATTRSMEFLKF 430

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN+ S+DRG  R L YR      K+      ++ 
Sbjct: 431  RELPAGQNAIVAIACYSGYNQEDSVIMNQTSIDRGLFRSLFYRAYTDQEKRIGMNVVEQF 490

Query: 1034 LGPLLEADTRKPVY-RHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAISMATPEY- 1090
              P   ADT K  +  +  LD+DGI+APG ++    +++ K+ P       +   T  + 
Sbjct: 491  EKP-YRADTLKLKHGTYDKLDEDGIIAPGVRVSGEDIIIGKTAPMAPDAEELGQRTKAHT 549

Query: 1091 -KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             ++     + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHGQKG IG+ 
Sbjct: 550  KRDASTPLRSTENGIVDQVLITTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGIT 609

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
              QEDMPF   GI PD+I+NPH +
Sbjct: 610  YRQEDMPFTRQGIVPDLIINPHAI 633



 Score =  158 bits (399), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 86/238 (36%), Positives = 130/238 (54%), Gaps = 13/238 (5%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESG-ICPDIIMNPHGL 1173
            ++ Q  +P   D    +HG      + G+I  G+ V  ED+   ++  + PD       L
Sbjct: 486  VVEQFEKPYRADTLKLKHGTYDKLDEDGIIAPGVRVSGEDIIIGKTAPMAPD----AEEL 541

Query: 1174 KGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
                +    ++     + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHG
Sbjct: 542  GQRTKAHTKRDASTPLRSTENGIVDQVLITTNAEGLRFVKVRMRTTKIPQIGDKFASRHG 601

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGT 1293
            QKG IG+   QEDMPF   GI PD+I+NPH  PSRMT+  LIE    K   + G   + T
Sbjct: 602  QKGTIGITYRQEDMPFTRQGIVPDLIINPHAIPSRMTIAHLIECQLSKVSTLRGLEGDAT 661

Query: 1294 AFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKI 1351
             F    +  V + L  HGY  +G +I Y G TG  + A ++ GP YYQ+L+HMV DKI
Sbjct: 662  PFTEVTVDSVSKLLRDHGYQSRGFEIMYHGHTGRKMMAQVFLGPTYYQRLRHMVDDKI 719



 Score =  113 bits (283), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 90/151 (59%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  T+TN L  ++ TGNW   ++      GV+QVL+R ++ S L  + R N+
Sbjct: 46  EFNLTLGVKSTTLTNGLKYSLATGNWGDQKKAASSTAGVSQVLNRYTFASTLSHLRRTNT 105

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM ++T       +++ M  
Sbjct: 106 PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYVTVGTPSDPIIEFMIQ 165

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
             +E +  +  E L SP    VFVNG+  G+
Sbjct: 166 RNMEVLEEY--EPLRSPNATKVFVNGVWVGV 194



 Score = 92.4 bits (228), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 80/169 (47%), Gaps = 44/169 (26%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVS----------ESG--IRPG----------- 724
           GF  F   + +G +EY+D  E     I ++          ++G  IRP            
Sbjct: 286 GFFGFQGLINDGVVEYVDAEEEETVMIVMTPEDLDISRQLQAGYQIRPDDSGDLNKRVKA 345

Query: 725 -------VTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGK 777
                  + TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGK
Sbjct: 346 PMNPTAHIWTHCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGK 391

Query: 778 QAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
           QAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 392 QAMGVFLTNFDQRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 440



 Score = 43.5 bits (101), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 14/70 (20%)

Query: 500 DDRDYYGNKRLELAGSLLSLMFEDVFKRFNSEL-----------KETNLS-GV--VNLVS 545
           DD D++G KRL+LAG LL+ +F ++F+R   ++           KE NL+ GV    L +
Sbjct: 1   DDSDHFGKKRLDLAGPLLAKLFRNLFRRLTGDVYKYLTKCVSDNKEFNLTLGVKSTTLTN 60

Query: 546 GWWFELKYGN 555
           G  + L  GN
Sbjct: 61  GLKYSLATGN 70


>gi|325960116|ref|YP_004291582.1| DNA-directed RNA polymerase subunit B [Methanobacterium sp. AL-21]
 gi|325331548|gb|ADZ10610.1| DNA-directed RNA polymerase subunit B [Methanobacterium sp. AL-21]
          Length = 603

 Score =  214 bits (544), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 107/266 (40%), Positives = 162/266 (60%), Gaps = 7/266 (2%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            G++P+ +HN +PRNT +  M KQA+G    N   R DT  + L + Q P+V++K++  T 
Sbjct: 137  GIIPFANHNSSPRNTMEAGMTKQALGLYVSNYNMRTDTRAHLLHHPQVPLVKTKSMDATK 196

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            + K P+GQN  +AVMSY GY++EDALI+NKAS++RG  R   +R+ +   ++YP    D+
Sbjct: 197  YDKRPSGQNFVVAVMSYEGYNMEDALILNKASIERGLARSSFFRSYEASERRYPGGQEDK 256

Query: 1033 ILGP--LLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMP---TISVSAISMAT 1087
               P  ++     + VYRH  LD+DGIV P  ++    VL+ K+ P      +       
Sbjct: 257  FEVPENIVRGYRSEEVYRH--LDEDGIVNPEVEVKSGDVLIGKTSPPRFLEEIDEFGTVA 314

Query: 1088 PEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
               +E  V+ +      ++ VL++   E + L K+ +R  R+PE GDKF+SRHGQKGV+G
Sbjct: 315  ERRRETSVTVRHGEHGVVDAVLLTETVEGSKLAKIRVRDQRQPEFGDKFASRHGQKGVVG 374

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            LIV QE+MPF E G+ PD+I+NPH +
Sbjct: 375  LIVSQENMPFTEVGVVPDLIINPHAI 400



 Score =  208 bits (529), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 98/190 (51%), Positives = 135/190 (71%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            +E  V+ +      ++ VL++   E + L K+ +R  R+PE GDKF+SRHGQKGV+GLIV
Sbjct: 318  RETSVTVRHGEHGVVDAVLLTETVEGSKLAKIRVRDQRQPEFGDKFASRHGQKGVVGLIV 377

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QE+MPF E G+ PD+I+NPH  PSRM+VG++IE+LAGKAG MEG   +GT FGG +  +
Sbjct: 378  SQENMPFTEVGVVPDLIINPHAIPSRMSVGQVIEMLAGKAGTMEGKRMDGTPFGGKQEAE 437

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
            + E L ++G+   G++  Y+GITGE +EA I+ G  +YQKL HM  DK++ARSRGP  VL
Sbjct: 438  IMELLKQNGFETAGRESLYNGITGERIEAEIFVGVAFYQKLHHMTADKVYARSRGPVQVL 497

Query: 1363 TRQPTGRRWK 1372
            TRQPT  R +
Sbjct: 498  TRQPTEGRAR 507



 Score = 87.0 bits (214), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 47/132 (35%), Positives = 74/132 (56%), Gaps = 15/132 (11%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKR 751
           ++  + +G IEY+D  E  +S+IA+    I     +HLEI P T+LG+CAGI        
Sbjct: 88  WEGLINQGIIEYMDAEEEENSYIAMFPEDITEN-HSHLEIDPSTMLGICAGI-------- 138

Query: 752 FHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTI 811
                 +P+ +HN +PRNT +  M KQA+G    N   R DT  + L + Q P+V++K++
Sbjct: 139 ------IPFANHNSSPRNTMEAGMTKQALGLYVSNYNMRTDTRAHLLHHPQVPLVKTKSM 192

Query: 812 RITNFHKLPAGK 823
             T + K P+G+
Sbjct: 193 DATKYDKRPSGQ 204


>gi|103001369|gb|ABF71504.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
            chlorophanum]
          Length = 699

 Score =  214 bits (544), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 106/264 (40%), Positives = 165/264 (62%), Gaps = 5/264 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 364  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDQRMDTMANILYYPQKPLATTRSMEFLKF 423

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR+     K+      ++ 
Sbjct: 424  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSVVEQF 483

Query: 1034 LGPLLEADTRKPVY-RHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAISMATPEY- 1090
              P + +DT K  +  +  LD DGIVAPG ++    +++ K+ P       +   T  + 
Sbjct: 484  EKP-MRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKLHV 542

Query: 1091 -KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             ++V    + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHGQKG IG+ 
Sbjct: 543  KRDVSTPLRSTENGIVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGIT 602

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
              QEDMPF   G+ PD+I+NPH +
Sbjct: 603  YRQEDMPFTMEGVVPDLIINPHAI 626



 Score =  135 bits (339), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 120/225 (53%), Gaps = 13/225 (5%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESG-ICPDIIMNPHGL 1173
            ++ Q  +P   D    +HG        G++  G+ V  ED+   ++  I PD       L
Sbjct: 479  VVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPD----AEEL 534

Query: 1174 KGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
                ++   ++V    + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHG
Sbjct: 535  GQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHG 594

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGT 1293
            QKG IG+   QEDMPF   G+ PD+I+NPH  PSRMT+  LIE    K   + G   + T
Sbjct: 595  QKGTIGITYRQEDMPFTMEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDAT 654

Query: 1294 AFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPV 1338
             F    +  V + L  HGY  +G ++ Y+G TG  L A ++ GP 
Sbjct: 655  PFTEVTVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 699



 Score =  114 bits (286), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 91/151 (60%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW   ++    + GV+QVL+R ++ S L  + R N+
Sbjct: 41  EFNLTLGVKSTTITNGLKYSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNT 100

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT     + +++ M  
Sbjct: 101 PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIEFMIQ 160

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
             +E +  +  E   SP    VFVNG+  G+
Sbjct: 161 RNMEVLEEY--EPQRSPNATKVFVNGVWVGV 189



 Score = 90.5 bits (223), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 348 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 393

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 394 YDQRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 433


>gi|56694370|gb|AAW22925.1| RNA polymerase II second largest subunit [Asarum caudatum]
          Length = 565

 Score =  214 bits (544), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 108/270 (40%), Positives = 167/270 (61%), Gaps = 19/270 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 200  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHF 259

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L +R+ +           ++ 
Sbjct: 260  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR---------DEEKK 310

Query: 1034 LGPLLEADTRKPV------YRHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            +G L++ D  +P        RH +   LD DG+  PG ++    V++ K+ P     +  
Sbjct: 311  MGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDESQG 370

Query: 1085 MATP-EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1143
             A+    ++   + + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQK
Sbjct: 371  QASRYTRRDHSTALRHSESGMVDQVLLTTNADGLRFVKVRMRSVRVPQIGDKFSSRHGQK 430

Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G +G+   QEDMP+   GI PDII+NPH +
Sbjct: 431  GTVGMTYTQEDMPWTVEGITPDIIVNPHAI 460



 Score =  179 bits (454), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 84/174 (48%), Positives = 114/174 (65%)

Query: 1197 LEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICP 1256
            +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   QEDMP+   GI P
Sbjct: 392  VDQVLLTTNADGLRFVKVRMRSVRVPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITP 451

Query: 1257 DIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQG 1316
            DII+NPH  PSRMT+G+LIE + GK     G   + T F    +  +   L + GY  +G
Sbjct: 452  DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDSISRALHKCGYQMRG 511

Query: 1317 KDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRR 1370
             +  Y+G TG  L A I+ GP YYQ+LKHMV DKIH+R RGP  +LTRQP   R
Sbjct: 512  FETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGR 565



 Score = 99.8 bits (247), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/171 (36%), Positives = 85/171 (49%), Gaps = 39/171 (22%)

Query: 677 RPTFLNMHQFLGFKRFD---------------DFLYEGKIEYLDVNEGNDSHIAVSESGI 721
           RP F+   Q L  K+ D               D + +G IEY+D  E   + I+++ + +
Sbjct: 109 RPLFIVEKQRLLIKKKDIRALQQRETHEEGWHDLVAKGFIEYVDTEEEETTMISMTINDL 168

Query: 722 RPG----------VTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTY 771
                          TH EI P  +LGVCA I              +P+P HNQ+PRNTY
Sbjct: 169 VSARLNPEEAYSETYTHCEIHPSLILGVCASI--------------IPFPDHNQSPRNTY 214

Query: 772 QCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAG 822
           Q AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F +LPAG
Sbjct: 215 QSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG 265



 Score = 50.4 bits (119), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 39/68 (57%), Gaps = 8/68 (11%)

Query: 270 TPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMFNGEELSS---PGVYLVF 326
           TPEG+ACGLVKNLALM +IT  +    +L+ +     E  +  N EE+S    P    +F
Sbjct: 1   TPEGQACGLVKNLALMVYITVGSAANPILEFL-----EEWSTENFEEISPAVIPQATKIF 55

Query: 327 VNGILAGI 334
           VNG   GI
Sbjct: 56  VNGCWVGI 63


>gi|46411502|gb|AAS94321.1| RNA polymerase II [Punctelia hypoleucites]
          Length = 705

 Score =  214 bits (544), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 107/266 (40%), Positives = 163/266 (61%), Gaps = 9/266 (3%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N + R+DT+   L Y Q+P+  ++++    F
Sbjct: 357  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYEQRMDTMANILYYPQKPLATTRSMEFLKF 416

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR      K+      ++ 
Sbjct: 417  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQEKRVGMSVVEQF 476

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKEV 1093
              P+     R     +  LD DG+VAPG ++    +++ K+ P I+  A  +   +  ++
Sbjct: 477  EKPMRSDTLRLKHGTYDKLDDDGLVAPGVRVSGEDIIIGKTAP-IAPDAEELG--QRTKL 533

Query: 1094 PVSYKGSVP------SYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
             V    S P        +++VL+S+N+E    +K+ +R T+ P+IGDKF+SRHGQKG IG
Sbjct: 534  HVKRDTSTPLRSTENGIVDQVLLSTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIG 593

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            +   QEDMPF   G+ PD+I+NPH +
Sbjct: 594  ITYRQEDMPFTSEGMVPDLIINPHAI 619



 Score =  157 bits (397), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 86/238 (36%), Positives = 130/238 (54%), Gaps = 13/238 (5%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESG-ICPDIIMNPHGL 1173
            ++ Q  +P   D    +HG        G++  G+ V  ED+   ++  I PD       L
Sbjct: 472  VVEQFEKPMRSDTLRLKHGTYDKLDDDGLVAPGVRVSGEDIIIGKTAPIAPDA----EEL 527

Query: 1174 KGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
                ++   ++     + +    +++VL+S+N+E    +K+ +R T+ P+IGDKF+SRHG
Sbjct: 528  GQRTKLHVKRDTSTPLRSTENGIVDQVLLSTNAEGLRFVKVRMRTTKIPQIGDKFASRHG 587

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGT 1293
            QKG IG+   QEDMPF   G+ PD+I+NPH  PSRMT+  LIE L  K   + G   + T
Sbjct: 588  QKGTIGITYRQEDMPFTSEGMVPDLIINPHAIPSRMTIAHLIECLLSKVSSLRGFEGDAT 647

Query: 1294 AFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKI 1351
             F    +  V   L  HGY  +G ++ Y+G TG  L   ++ GP YYQ+L+HMV DKI
Sbjct: 648  PFTEVTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVTQVFLGPTYYQRLRHMVDDKI 705



 Score =  111 bits (278), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 91/151 (60%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++   +TN L  ++ TGNW   ++    + GV+QVL+R ++ S L  + R N+
Sbjct: 33  EFNMTLAVKSTHLTNGLRYSLATGNWGDQKKAASVKAGVSQVLNRYTFASTLSHLRRTNT 92

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT     + ++  M  
Sbjct: 93  PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIVDFMIQ 152

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
             +E +  +  E L+SP    +FVNG+  G+
Sbjct: 153 RNMEVLEEY--EPLNSPNATKIFVNGVWVGV 181



 Score = 90.9 bits (224), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 59/100 (59%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 341 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 386

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
            + R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 387 YEQRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 426


>gi|68131876|gb|AAY85216.1| RNA polymerase II second largest subunit [Hibbertia scandens]
          Length = 873

 Score =  214 bits (544), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 108/270 (40%), Positives = 168/270 (62%), Gaps = 19/270 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 613  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHF 672

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG N+ +A+  YSGY+ ED++IMN++S+DRGF R L +R+ +           ++ 
Sbjct: 673  RQLPAGINSIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR---------DEEKK 723

Query: 1034 LGPLLEADTRKPV------YRHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            +G L++ D  +P        RH +   LD DG+  PG ++    V++ K+ P     A  
Sbjct: 724  MGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIAQDDAQG 783

Query: 1085 MATP-EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1143
            +++    ++   S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQK
Sbjct: 784  VSSRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQK 843

Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G +G+   QEDMP+   GI PDII+NPH +
Sbjct: 844  GTVGMTYTQEDMPWTVEGITPDIIVNPHAI 873



 Score =  116 bits (290), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 62/146 (42%), Positives = 87/146 (59%), Gaps = 8/146 (5%)

Query: 192 MRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKV 251
           ++  TIT+ L  ++ TGNW        R GV+QVL+RL+Y S L  + R+NS   +  K+
Sbjct: 335 IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYSSTLSHLRRLNSPIGREGKL 394

Query: 252 SGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAM 311
           + PR L  S WGM+CP++TPEG+ACGLVKNLALM +IT  +    +L+ +     E  + 
Sbjct: 395 AKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFL-----EEWST 449

Query: 312 FNGEELSS---PGVYLVFVNGILAGI 334
            N EE+S    P    +FVNG   GI
Sbjct: 450 ENFEEISPAVIPQATKIFVNGCWVGI 475



 Score = 99.8 bits (247), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 62/172 (36%), Positives = 85/172 (49%), Gaps = 40/172 (23%)

Query: 677 RPTFLNMHQFLGFKRFD----------------DFLYEGKIEYLDVNEGNDSHIAVSESG 720
           RP F+   Q L  K+ D                D + +G IEY+D  E   + I+++ + 
Sbjct: 521 RPLFIVEKQRLLIKKKDIRALQQRESPEDGGWHDLVAKGFIEYVDTEEEETTMISMTIND 580

Query: 721 IRPG----------VTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNT 770
           +               TH EI P  +LGVCA I              +P+P HNQ+PRNT
Sbjct: 581 LVTARLNPEEAYSDTYTHCEIHPSLILGVCASI--------------IPFPDHNQSPRNT 626

Query: 771 YQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAG 822
           YQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F +LPAG
Sbjct: 627 YQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG 678



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/78 (47%), Positives = 54/78 (69%)

Query: 1187 VSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQED 1246
             S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   QED
Sbjct: 795  TSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 854

Query: 1247 MPFNESGICPDIIMNPHG 1264
            MP+   GI PDII+NPH 
Sbjct: 855  MPWTVEGITPDIIVNPHA 872



 Score = 54.3 bits (129), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 14/114 (12%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A++ L    + H+ V       KA Y   +I R++L        DDRD+YGNKRL+LAG 
Sbjct: 239 AKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP 298

Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYGN 555
           LL  +F  +F++   ++           K+ NL   +    + SG  + L  GN
Sbjct: 299 LLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGN 352



 Score = 42.7 bits (99), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 19/68 (27%)

Query: 358 PHECRLRDLTYSAPITVDIEYTRGSQRVVR--------------SDLVIGRMPIMLQSSK 403
           P   RLR+LTYSAP+ VD+     ++R+++              + + IG++PIML+SS 
Sbjct: 7   PKAARLRNLTYSAPLYVDV-----TKRIIKKGHDCEEVTETQDFAKVFIGKVPIMLRSSY 61

Query: 404 CVLRNKTE 411
           C +   +E
Sbjct: 62  CTVYQNSE 69


>gi|52699820|gb|AAU86972.1| DNA-dependent RNA polymerase II second largest subunit [Gyromitra
            esculenta]
          Length = 699

 Score =  214 bits (544), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 103/264 (39%), Positives = 162/264 (61%), Gaps = 5/264 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 352  IIPFPDHNQSPRNTYQSAMGKQAMGVFXTNFSERMDTMANILYYPQKPLATTRSMEYLKF 411

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R L YR      K+   Q  +  
Sbjct: 412  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYMDQEKRIGMQVVEEF 471

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPE---- 1089
              P      +     +  LD+DG+VAPG ++    +++ K+ P I+     M   +    
Sbjct: 472  EKPTRSNTLKLKQGTYEKLDEDGLVAPGVRVSGEDIIIGKTAP-IAPDVDEMGQRQKFHT 530

Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             ++V    + +    +++V++++N+E    +K+ +R T+ P+IGDKF+SRHGQKG +G+ 
Sbjct: 531  KRDVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKGTVGIT 590

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
              QEDMPF   GI PD+I+NPH +
Sbjct: 591  YRQEDMPFTCEGIVPDLIINPHAI 614



 Score =  150 bits (379), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 77/205 (37%), Positives = 121/205 (59%), Gaps = 5/205 (2%)

Query: 1147 GLIVEQEDMPFNESG-ICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSN 1205
            G+ V  ED+   ++  I PD+  +  G +   +    ++V    + +    +++V++++N
Sbjct: 499  GVRVSGEDIIIGKTAPIAPDV--DEMGQR--QKFHTKRDVSTPLRSTENGIVDQVMLTTN 554

Query: 1206 SEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGY 1265
            +E    +K+ +R T+ P+IGDKF+SRHGQKG +G+   QEDMPF   GI PD+I+NPH  
Sbjct: 555  AEGLKFVKVRMRTTKIPQIGDKFASRHGQKGTVGITYRQEDMPFTCEGIVPDLIINPHAI 614

Query: 1266 PSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGIT 1325
            PSRMT+  LIE    K   + G   + T F    +  V   L ++GY  +G ++ Y+G T
Sbjct: 615  PSRMTIAHLIECQLSKVSSLRGFEGDATPFTDVTVESVSTLLRQNGYQSRGFEVMYNGYT 674

Query: 1326 GEALEAYIYSGPVYYQKLKHMVQDK 1350
            G  L A ++ GP YYQ+L+HMV DK
Sbjct: 675  GRKLVAQVFLGPTYYQRLRHMVDDK 699



 Score =  112 bits (279), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 55/152 (36%), Positives = 92/152 (60%), Gaps = 3/152 (1%)

Query: 183 AAQFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRI 241
           A +F++   ++ +TITN L  ++ TGNW   ++    + GV+QVL+R ++ S L  + R 
Sbjct: 35  AKEFNLTLAVKSNTITNGLKYSLATGNWGEQKKAASSKAGVSQVLNRYTFASTLSHLRRT 94

Query: 242 NSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIM 301
           N+   +  K++ PR L  + WG++CP++TPEG+ACGLVKNL+LM++IT       ++  +
Sbjct: 95  NTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSYITIGTPGYPLVDFL 154

Query: 302 YNIGIEHIAMFNGEELSSPGVYLVFVNGILAG 333
            +  +E +  +  E   SP    VFVNG+  G
Sbjct: 155 SSNDMELLEEY--EPQRSPNATKVFVNGVWVG 184



 Score = 92.4 bits (228), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 74/164 (45%), Gaps = 43/164 (26%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIR----------------------------- 722
           ++  LY G +EYLD  E   + I ++   +                              
Sbjct: 272 WEGLLYSGSVEYLDAEEEETAMIVMTPEDLEMSRQVQLGYEEPHDQYSAKRFKAPINAHT 331

Query: 723 PGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGC 782
               TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG 
Sbjct: 332 AHTWTHCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGV 377

Query: 783 IGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              N   R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 378 FXTNFSERMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAI 421


>gi|56675892|emb|CAD89518.2| RNA polymerase II second largest subunit [Tephrosia purpurea]
          Length = 423

 Score =  214 bits (544), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 111/273 (40%), Positives = 169/273 (61%), Gaps = 23/273 (8%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 97   IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 156

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L +R+ +           ++ 
Sbjct: 157  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR---------DEEKK 207

Query: 1034 LGPLLEADTRKPV--------YRHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSA 1082
            +G L++ D  +P          RH +   LD DG+  PG ++    V++ K+ P IS   
Sbjct: 208  MGTLVKEDFGRPDRANTMVRGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP-ISQEE 266

Query: 1083 ISMATPEY--KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRH 1140
                +  Y  ++  +S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRH
Sbjct: 267  AQGQSLRYTRRDHSISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRH 326

Query: 1141 GQKGVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            GQKG +G+   QEDMP+   GI PDII+NPH +
Sbjct: 327  GQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAI 359



 Score =  124 bits (310), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 58/142 (40%), Positives = 88/142 (61%)

Query: 1187 VSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQED 1246
            +S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   QED
Sbjct: 281  ISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 340

Query: 1247 MPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEE 1306
            MP+   GI PDII+NPH  PSRMT+G+LIE + G+     G   + T F    + ++ + 
Sbjct: 341  MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGRVAAHMGKEGDATPFTDVTVDNISKA 400

Query: 1307 LIRHGYNYQGKDIFYSGITGEA 1328
            L + GY   G +  Y+G TG  
Sbjct: 401  LHKCGYQMXGFETMYNGHTGRG 422



 Score =  100 bits (250), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 56/141 (39%), Positives = 78/141 (55%), Gaps = 24/141 (17%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPG----------VTTHLEIAPFTLLGVCA 741
           + D + +G IEY+D  E   + I+++ + +  G            TH EI P  +LGVCA
Sbjct: 36  WHDLVSKGFIEYIDTEEEETTMISMTINDLVQGRLYPEDAYSDTYTHCEIHPSLILGVCA 95

Query: 742 GIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYA 801
            I              +P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y 
Sbjct: 96  SI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYP 141

Query: 802 QRPMVESKTIRITNFHKLPAG 822
           Q+P+V ++ +   +F +LPAG
Sbjct: 142 QKPLVTTRAMEHLHFRQLPAG 162


>gi|68131914|gb|AAY85235.1| RNA polymerase II second largest subunit [Tetracentron sinense]
          Length = 951

 Score =  214 bits (544), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 109/270 (40%), Positives = 166/270 (61%), Gaps = 19/270 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 613  IIPFPDHNQTPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHF 672

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L +R+ +           ++ 
Sbjct: 673  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR---------DEEKK 723

Query: 1034 LGPLLEADTRKPV------YRHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            +G L++ D  +P        RH +   LD DG+  PG ++    V++ K+ P     +  
Sbjct: 724  MGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDESQG 783

Query: 1085 MATP-EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1143
             A+    ++   S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQK
Sbjct: 784  QASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSIRIPQIGDKFSSRHGQK 843

Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G +G+   QEDMP+   GI PDII+NPH +
Sbjct: 844  GTVGMTYTQEDMPWTVEGITPDIIVNPHAI 873



 Score =  143 bits (361), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 68/157 (43%), Positives = 99/157 (63%)

Query: 1187 VSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQED 1246
             S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   QED
Sbjct: 795  TSLRHSESGMVDQVLLTTNADGLRFVKVRMRSIRIPQIGDKFSSRHGQKGTVGMTYTQED 854

Query: 1247 MPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEE 1306
            MP+   GI PDII+NPH  PSRMT+G+LIE + GK     G   + T F    + ++ + 
Sbjct: 855  MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 914

Query: 1307 LIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKL 1343
            L + GY  +G +  Y+G TG  L A I+ GP YYQ+L
Sbjct: 915  LHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRL 951



 Score =  116 bits (290), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 62/146 (42%), Positives = 87/146 (59%), Gaps = 8/146 (5%)

Query: 192 MRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKV 251
           ++  TIT+ L  ++ TGNW        R GV+QVL+RL+Y S L  + R+NS   +  K+
Sbjct: 335 IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKL 394

Query: 252 SGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAM 311
           + PR L  S WGM+CP++TPEG+ACGLVKNLALM +IT  +    +L+ +     E  + 
Sbjct: 395 AKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFL-----EEWST 449

Query: 312 FNGEELSS---PGVYLVFVNGILAGI 334
            N EE+S    P    +FVNG   GI
Sbjct: 450 ENFEEISPAVIPQATKIFVNGCWVGI 475



 Score = 99.8 bits (247), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/141 (39%), Positives = 77/141 (54%), Gaps = 24/141 (17%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVS-----ESGIRP-----GVTTHLEIAPFTLLGVCA 741
           + D + +G IEY+D  E   + I+++      + + P        TH EI P  +LGVCA
Sbjct: 552 WHDLVAKGYIEYVDTEEEETTMISMTINDLITAKLNPEEAYSDTYTHCEIHPSLILGVCA 611

Query: 742 GIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYA 801
            I              +P+P HNQ PRNTYQ AMGKQAMG    N Q R+DTL Y L Y 
Sbjct: 612 SI--------------IPFPDHNQTPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYP 657

Query: 802 QRPMVESKTIRITNFHKLPAG 822
           Q+P+V ++ +   +F +LPAG
Sbjct: 658 QKPLVTTRAMEHLHFRQLPAG 678



 Score = 54.7 bits (130), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 14/114 (12%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A++ L    + H+ V       KA Y   +I R++L        DDRD+YGNKRL+LAG 
Sbjct: 239 AKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCAIGRRPEDDRDHYGNKRLDLAGP 298

Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYGN 555
           LL  +F  +F++   ++           K+ NL   +    + SG  + L  GN
Sbjct: 299 LLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGN 352



 Score = 42.7 bits (99), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 19/68 (27%)

Query: 358 PHECRLRDLTYSAPITVDIEYTRGSQRVVR--------------SDLVIGRMPIMLQSSK 403
           P   RLR+LTYSAP+ VD+     ++R+++              + + IG++PIML+SS 
Sbjct: 7   PKAARLRNLTYSAPLYVDV-----TKRIIKKGHDCEEVTETQEFTKVFIGKVPIMLRSSY 61

Query: 404 CVLRNKTE 411
           C +   +E
Sbjct: 62  CTVYQNSE 69


>gi|58758743|gb|AAW81770.1| RNA polymerase II second largest subunit [Fibulorhizoctonia sp.
            LA082103L]
          Length = 576

 Score =  213 bits (543), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 105/263 (39%), Positives = 160/263 (60%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 223  IIPFPDHNQSPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKF 282

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 283  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSVDRGLFRSIYYRSYMDLEKKSGIQQLEEF 342

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  E   R     +  ++ DG++APG  +    +++ K+ P    S        T   
Sbjct: 343  EKPTRENTLRMKHGTYDKIEDDGLIAPGTGVSGEDIIIGKTAPIPPDSEELGQRTRTHTR 402

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ +R TR P+ GDKF+SRHGQKG +G+  
Sbjct: 403  RDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRATRIPQTGDKFASRHGQKGTVGITY 462

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 463  RQEDMPFTAEGIVPDIIINPHAI 485



 Score =  173 bits (438), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 81/174 (46%), Positives = 112/174 (64%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++NSE    +K+ +R TR P+ GDKF+SRHGQKG +G+  
Sbjct: 403  RDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRATRIPQTGDKFASRHGQKGTVGITY 462

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDII+NPH  PSRMT+G LIE L  K   + GN  + T F    +  
Sbjct: 463  RQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLIECLLSKVATLIGNEGDATPFTDLTVES 522

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSR 1356
            V   L + GY  +G ++ Y G +G  L+A +Y GP YYQ+LKHMV DKIH+R+R
Sbjct: 523  VSAFLRQKGYQSRGLEVMYHGHSGRKLQAQVYLGPTYYQRLKHMVDDKIHSRAR 576



 Score = 91.7 bits (226), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 48/121 (39%), Positives = 67/121 (55%), Gaps = 14/121 (11%)

Query: 706 VNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQ 765
           VN+G+    A  ++G      TH EI P  +LG+CA I              +P+P HNQ
Sbjct: 186 VNDGDFDPAARLKAGTNAHTWTHCEIHPSMILGICASI--------------IPFPDHNQ 231

Query: 766 APRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQ 825
           +PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  
Sbjct: 232 SPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNA 291

Query: 826 I 826
           I
Sbjct: 292 I 292



 Score = 47.4 bits (111), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 42/67 (62%), Gaps = 3/67 (4%)

Query: 268 SDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMFNGEELSSPGVYLVFV 327
           ++TPEG+ACGLVKNLALM+ I+  +    +++ +   G+E  ++      S+P    VFV
Sbjct: 1   AETPEGQACGLVKNLALMSCISVGSLSAPVIEFLEEWGLE--SLEENAHSSTPCTK-VFV 57

Query: 328 NGILAGI 334
           NG+  G+
Sbjct: 58  NGVWMGV 64


>gi|56694338|gb|AAW22909.1| RNA polymerase II second largest subunit [Podocarpus coriaceus]
          Length = 514

 Score =  213 bits (543), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 107/261 (40%), Positives = 161/261 (61%), Gaps = 1/261 (0%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 176  IIPFPDHNQSPRNTYQSAMGKQAMGXYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHF 235

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L +R+ +   K+      +  
Sbjct: 236  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKRMGTLVKEEF 295

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMP-TISVSAISMATPEYKE 1092
              P  E  T      +  LD DG+  PG ++    V++ K+ P +   S   ++    ++
Sbjct: 296  GRPNRENTTGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPVSQEESGNQISKYTRRD 355

Query: 1093 VPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQ 1152
               S + S    +++VL+++N +    +K+ +R  R P+IGDKFSSRHGQKG +G+   Q
Sbjct: 356  QSTSLRHSESGMVDQVLLTTNQDGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQ 415

Query: 1153 EDMPFNESGICPDIIMNPHGL 1173
            EDMP+   GI PDII+NPH +
Sbjct: 416  EDMPWTVEGITPDIIVNPHAI 436



 Score =  144 bits (363), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 70/169 (41%), Positives = 105/169 (62%), Gaps = 2/169 (1%)

Query: 1177 DRITEY--KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQ 1234
            ++I++Y  ++   S + S    +++VL+++N +    +K+ +R  R P+IGDKFSSRHGQ
Sbjct: 346  NQISKYTRRDQSTSLRHSESGMVDQVLLTTNQDGLRFVKVRMRSVRIPQIGDKFSSRHGQ 405

Query: 1235 KGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTA 1294
            KG +G+   QEDMP+   GI PDII+NPH  PSRMT+G+LIE + GK     G   + T 
Sbjct: 406  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 465

Query: 1295 FGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKL 1343
            F    +  + + L + GY  +G +  Y+G TG  L A I+ GP YYQ+L
Sbjct: 466  FTDVTVDSISKALHKCGYQMRGFETMYNGHTGRKLNAMIFLGPTYYQRL 514



 Score =  101 bits (252), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 63/169 (37%), Positives = 86/169 (50%), Gaps = 37/169 (21%)

Query: 677 RPTFLNMHQFLGFKRFD-------------DFLYEGKIEYLDVNEGNDSHIAVSESGIRP 723
           RP F+   Q L  K+ D             D + +G IEY+D  E   + I+++ + +  
Sbjct: 87  RPLFVVKKQRLIIKKRDINELWQNPEDGWHDLITKGFIEYVDTEEEETTMISMTINDLVN 146

Query: 724 GVT----------THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQC 773
             T          TH EI P  +LGVCA I              +P+P HNQ+PRNTYQ 
Sbjct: 147 ARTNPEDAYSHTYTHCEIHPXLILGVCASI--------------IPFPDHNQSPRNTYQS 192

Query: 774 AMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAG 822
           AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F +LPAG
Sbjct: 193 AMGKQAMGXYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG 241


>gi|40644998|emb|CAD89358.1| RNA polymerase II, second largest subunit [Vitis piasezkii]
          Length = 551

 Score =  213 bits (543), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 109/270 (40%), Positives = 167/270 (61%), Gaps = 19/270 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 204  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHF 263

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L +R+ +           ++ 
Sbjct: 264  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR---------DEEKK 314

Query: 1034 LGPLLEADTRKPV------YRHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            +G L++ D  +P        RH +   LD DG+  PG ++    V++ K+ P     +  
Sbjct: 315  MGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDSQG 374

Query: 1085 MATP-EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1143
             A+    ++   S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQK
Sbjct: 375  QASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQK 434

Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G +G+   QEDMP+   GI PDII+NPH +
Sbjct: 435  GTVGMTYTQEDMPWTVEGITPDIIVNPHAI 464



 Score =  161 bits (408), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 76/166 (45%), Positives = 107/166 (64%)

Query: 1187 VSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQED 1246
             S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   QED
Sbjct: 386  TSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 445

Query: 1247 MPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEE 1306
            MP+   GI PDII+NPH  PSRMT+G+LIE + GK     G   + T F    + ++ + 
Sbjct: 446  MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 505

Query: 1307 LIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIH 1352
            L + GY  +G +  Y+G TG  L A I+ GP YYQ+LKHMV DKIH
Sbjct: 506  LHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIH 551



 Score = 99.0 bits (245), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/172 (36%), Positives = 85/172 (49%), Gaps = 40/172 (23%)

Query: 677 RPTFLNMHQFLGFKRFD----------------DFLYEGKIEYLDVNEGNDSHIAVSESG 720
           RP F+   Q L  K+ D                D + +G IEY+D  E   + I+++ + 
Sbjct: 112 RPLFIVEKQRLLIKKRDIRALQLRESPEDGGWHDLVSKGFIEYVDTEEEETTMISMTIND 171

Query: 721 IRPG----------VTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNT 770
           +               TH EI P  +LGVCA I              +P+P HNQ+PRNT
Sbjct: 172 LISARLNPEEAYSETYTHCEIHPSLILGVCASI--------------IPFPDHNQSPRNT 217

Query: 771 YQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAG 822
           YQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F +LPAG
Sbjct: 218 YQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG 269



 Score = 53.5 bits (127), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 42/71 (59%), Gaps = 8/71 (11%)

Query: 267 PSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMFNGEELSS---PGVY 323
           P++TPEG+ACGLVKNLALM +IT  +    +L+ +     E  +  N EE+S    P   
Sbjct: 1   PAETPEGQACGLVKNLALMVYITVGSAANPILEFL-----EEWSTENFEEISPAVIPQST 55

Query: 324 LVFVNGILAGI 334
            +FVNG   GI
Sbjct: 56  KIFVNGCWVGI 66


>gi|56694322|gb|AAW22901.1| RNA polymerase II second largest subunit [Stangeria eriopus]
          Length = 538

 Score =  213 bits (543), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 111/270 (41%), Positives = 167/270 (61%), Gaps = 19/270 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 191  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHF 250

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L YR+ +           ++ 
Sbjct: 251  RQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFYRSYR---------DEEKR 301

Query: 1034 LGPLLEADTRKPV------YRHRA---LDQDGIVAPGEQICERQVLVNKSMP-TISVSAI 1083
            +G L++ +  +P        RH +   LD DG+  PG ++    V++ K+ P T   S  
Sbjct: 302  MGTLIKEEFGRPNRENTIGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPVTQDESGG 361

Query: 1084 SMATPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1143
              A    ++   S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQK
Sbjct: 362  QAARYTKRDQSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQK 421

Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G +G+   QEDMP+   GI PDII+NPH +
Sbjct: 422  GTVGMTYCQEDMPWTVEGITPDIIVNPHAI 451



 Score =  161 bits (407), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 76/170 (44%), Positives = 109/170 (64%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++   S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+  
Sbjct: 369  RDQSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTY 428

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMP+   GI PDII+NPH  PSRMT+G+LIE + GK     G   + T F    + +
Sbjct: 429  CQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDN 488

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIH 1352
            + + L + GY  +G +  Y+G TG  L A I+ GP YYQ+LKHMV DKIH
Sbjct: 489  ISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIH 538



 Score = 92.8 bits (229), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/136 (39%), Positives = 75/136 (55%), Gaps = 25/136 (18%)

Query: 698 EGKIEYLDVNEGNDSHIAVSESGI------RPGVT-----THLEIAPFTLLGVCAGIELL 746
           +G IEY+D  E   + I+++ + +       P  +     TH EI    +LGVCA I   
Sbjct: 135 QGFIEYVDTEEEETTMISMTIADLVNARNSPPTASSIVKYTHCEIHXSLILGVCASI--- 191

Query: 747 QYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMV 806
                      +P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V
Sbjct: 192 -----------IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLV 240

Query: 807 ESKTIRITNFHKLPAG 822
            ++ +   +F +LPAG
Sbjct: 241 TTRAMEHLHFRQLPAG 256


>gi|94410940|gb|ABF18588.1| RNA polymerase II second largest subunit, partial [Inocephalus sp.
            GD-b]
          Length = 546

 Score =  213 bits (543), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 225  IIPFPDHNQSPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLRF 284

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 285  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEF 344

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  E   R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 345  EKPSRENTLRMKHGTYDKLEDDGLIAPGTGVRGEDIIIGKTAPIPPDSEELGQRTRTHTR 404

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NS+    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 405  RDVSTPLKSTESGMVDQVLITTNSDGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITY 464

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PD+I+NPH +
Sbjct: 465  RQEDMPFTAEGIVPDLIINPHAI 487



 Score =  128 bits (321), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 60/141 (42%), Positives = 87/141 (61%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++NS+    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 405  RDVSTPLKSTESGMVDQVLITTNSDGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITY 464

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PD+I+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 465  RQEDMPFTAEGIVPDLIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVES 524

Query: 1303 VQEELIRHGYNYQGKDIFYSG 1323
            V   L + GY  +G ++ Y G
Sbjct: 525  VSTFLRQKGYQSRGLEVMYHG 545



 Score = 90.5 bits (223), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 78/165 (47%), Gaps = 43/165 (26%)

Query: 691 RFDDFLYEGKIEYLDVNEGNDSHIAVS----------ESGIRPGVT-------------- 726
           ++D+ +  G +E LD  E     IA++          +SGI P                 
Sbjct: 144 KWDNLVKGGIVELLDAEEEETVMIAMTPEDLENSRLQQSGIDPAANDGEFDPAARLKAGT 203

Query: 727 -----THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMG 781
                TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG
Sbjct: 204 NSHTWTHCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMG 249

Query: 782 CIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
               N   R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 250 IFLTNFLIRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNAI 294



 Score = 51.6 bits (122), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 3/69 (4%)

Query: 266 CPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMFNGEELSSPGVYLV 325
           CP++TPEG+ACGLVKNLALM  I+  +    +++ +   G+E +        S      V
Sbjct: 1   CPAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEEWGLESL---EENAHSQTPCTKV 57

Query: 326 FVNGILAGI 334
           FVNG+  G+
Sbjct: 58  FVNGVWMGV 66


>gi|46277279|gb|AAS86830.1| RPB140, partial [Liquidambar acalycina]
          Length = 540

 Score =  213 bits (543), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 109/270 (40%), Positives = 166/270 (61%), Gaps = 19/270 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 202  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 261

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L +R+ +           ++ 
Sbjct: 262  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSVDRGFFRSLFFRSYR---------DEEKK 312

Query: 1034 LGPLLEADTRKPV------YRH---RALDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            +G L++ D  +P        RH     LD DG+  PG ++    V++ K+ P     +  
Sbjct: 313  MGTLVKEDFGRPNRADTMGMRHGSYEKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDESQG 372

Query: 1085 MATP-EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1143
             A+    ++   S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQK
Sbjct: 373  QASRYTRRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQK 432

Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G +G+   QEDMP+   GI PDII+NPH +
Sbjct: 433  GTVGMTYTQEDMPWTVEGITPDIIVNPHAI 462



 Score =  143 bits (360), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 68/156 (43%), Positives = 99/156 (63%)

Query: 1188 SYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDM 1247
            S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   QEDM
Sbjct: 385  SLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDM 444

Query: 1248 PFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEEL 1307
            P+   GI PDII+NPH  PSRMT+G+LIE + GK     G   + T F    + ++ + L
Sbjct: 445  PWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKAL 504

Query: 1308 IRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKL 1343
             + GY  +G +  Y+G TG  L A I+ GP YYQ+L
Sbjct: 505  HKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 540



 Score = 99.4 bits (246), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/172 (36%), Positives = 85/172 (49%), Gaps = 40/172 (23%)

Query: 677 RPTFLNMHQFLGFKRFD----------------DFLYEGKIEYLDVNEGNDSHIAVSESG 720
           RP F+   Q L  K+ D                D + +G IEY+D  E   + I+++ + 
Sbjct: 110 RPLFIVERQRLLIKKKDIQALQQRETPDDGGWHDLVAKGFIEYVDTEEEETTMISMTIND 169

Query: 721 IRPG----------VTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNT 770
           +               TH EI P  +LGVCA I              +P+P HNQ+PRNT
Sbjct: 170 LVSARLNPEEAYSETYTHCEIHPSLILGVCASI--------------IPFPDHNQSPRNT 215

Query: 771 YQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAG 822
           YQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F +LPAG
Sbjct: 216 YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG 267



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 40/69 (57%), Gaps = 8/69 (11%)

Query: 269 DTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMFNGEELSS---PGVYLV 325
           +TPEG+ACGLVKNLALM +IT  +    +L+ +   G E     N EE+S    P    +
Sbjct: 1   ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTE-----NFEEISPAVIPQATKI 55

Query: 326 FVNGILAGI 334
           FVNG   GI
Sbjct: 56  FVNGCWVGI 64


>gi|55583692|gb|AAV53365.1| RNA polymerase II second largest subunit [Hygrophoropsis aurantiaca]
          Length = 863

 Score =  213 bits (543), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 105/263 (39%), Positives = 160/263 (60%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 492  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKF 551

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 552  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEF 611

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  ++ DG++APG  +    +++ K+ P    S        T   
Sbjct: 612  EKPTRDTTLRMKHGTYDKIEDDGLIAPGTGVSGEDIIIGKTAPIPPDSEELGQRTRTHTR 671

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ +R TR P+ GDKF+SRHGQKG IG+  
Sbjct: 672  RDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTRIPQTGDKFASRHGQKGTIGITY 731

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 732  RQEDMPFTAEGIVPDIIINPHAI 754



 Score =  189 bits (479), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 90/188 (47%), Positives = 121/188 (64%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++NSE    +K+ +R TR P+ GDKF+SRHGQKG IG+  
Sbjct: 672  RDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTRIPQTGDKFASRHGQKGTIGITY 731

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 732  RQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVES 791

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
            V   L + GY  +G ++ Y G TG  L+A +Y GP YYQ+LKHMV DKIH+R+RGP  +L
Sbjct: 792  VSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMVDDKIHSRARGPVQIL 851

Query: 1363 TRQPTGRR 1370
            TRQP   R
Sbjct: 852  TRQPVEGR 859



 Score =  111 bits (277), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 93/151 (61%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKM-ERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 185 EFNLSLAVKHQTITNGLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNT 244

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM+ I+  +    +++ +  
Sbjct: 245 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSYSAPVIEFLEE 304

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E  ++      S+P    VFVNG+  G+
Sbjct: 305 WGLE--SLEENAHSSTPCTK-VFVNGVWMGV 332



 Score = 90.1 bits (222), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 85/165 (51%), Gaps = 22/165 (13%)

Query: 718 ESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGK 777
           ++GI     TH EI P  +LGVCA I              +P+P HNQ+PRNTYQ AMGK
Sbjct: 467 KAGINAHTWTHCEIHPSMILGVCASI--------------IPFPDHNQSPRNTYQSAMGK 512

Query: 778 QAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQISPGGAEELTAR 837
           QAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  I    A    + 
Sbjct: 513 QAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIV---AILCYSG 569

Query: 838 ESCHEVLKIISFSISVAVFDSVWLG-----DVKQGVHQLSEEKEP 877
            +  + + +   SI   +F S++       + K GV QL E ++P
Sbjct: 570 YNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKP 614



 Score = 60.1 bits (144), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 58/114 (50%), Gaps = 14/114 (12%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A++ L    + H+ +       KA +   MI R++LA  +   LDDRD++G KRL+LAG 
Sbjct: 96  AQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAALERRELDDRDHFGKKRLDLAGP 155

Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYGN 555
           LL+ +F  +FK+   ++           KE NLS  V    + +G  + L  GN
Sbjct: 156 LLANLFRMLFKKLTRDVYRYLQKCVETHKEFNLSLAVKHQTITNGLKYSLATGN 209


>gi|55273993|gb|AAV48867.1| RNA polymerase II second largest subunit [Armillaria mellea]
          Length = 884

 Score =  213 bits (543), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 109/265 (41%), Positives = 162/265 (61%), Gaps = 7/265 (2%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 535  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKF 594

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   V K     + +  
Sbjct: 595  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDVEKNNGIHSMEVF 654

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSA-----ISMATP 1088
              P+ E+  R     +  L+ DG++APG  +    +++ K+ P    S        M T 
Sbjct: 655  EKPMRESTLRMKHGTYDKLEDDGLIAPGTGVVGEDIIIGKTAPIPPESEELGQRTRMHT- 713

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
              ++V    K +    +++VLV++N E    +K+ +R TR P+IGDKF+SRHGQKG IG+
Sbjct: 714  -RRDVSTPLKNTERGIVDQVLVTTNYEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGI 772

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
               QEDMPF   GI PDII+NPH +
Sbjct: 773  TYRQEDMPFTCEGIVPDIIINPHAI 797



 Score =  168 bits (426), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 82/175 (46%), Positives = 110/175 (62%)

Query: 1178 RITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV 1237
            R+   ++V    K +    +++VLV++N E    +K+ +R TR P+IGDKF+SRHGQKG 
Sbjct: 710  RMHTRRDVSTPLKNTERGIVDQVLVTTNYEGQKFVKVRVRSTRIPQIGDKFASRHGQKGT 769

Query: 1238 IGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGG 1297
            IG+   QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F  
Sbjct: 770  IGITYRQEDMPFTCEGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTD 829

Query: 1298 TKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIH 1352
              +  V   L + GY  +G ++ Y G TG  L+A +Y GP YYQ+LKHMV DKIH
Sbjct: 830  LTVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMVDDKIH 884



 Score =  110 bits (275), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 90/151 (59%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 229 EFNVSVGVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT 288

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM+ I+  +    +++ +  
Sbjct: 289 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSYSAPVIEFLEE 348

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E          S+     VFVNG+  G+
Sbjct: 349 WGLE---TLEENAHSATPCTKVFVNGVWMGV 376



 Score = 91.7 bits (226), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 48/123 (39%), Positives = 68/123 (55%), Gaps = 14/123 (11%)

Query: 704 LDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHH 763
           +  N+G+    A  ++GI     TH EI P  +LG+CA I              +P+P H
Sbjct: 496 IHANDGDFDPAARLKAGINAHTWTHCEIHPSMILGICASI--------------IPFPDH 541

Query: 764 NQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
           NQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+
Sbjct: 542 NQSPRNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQ 601

Query: 824 CQI 826
             I
Sbjct: 602 NAI 604



 Score = 57.4 bits (137), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 58/114 (50%), Gaps = 14/114 (12%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A++ L    + H+ +       KA +   MI R++LA  +   LDDRD+ G  RL+LAG 
Sbjct: 140 AQEILQKEMLPHVSMSEGSESKKAYFFGYMIHRLLLAALERRELDDRDHLGKNRLDLAGP 199

Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYGN 555
           LL+ +F  +F++FN ++           KE N+S  V    + +G  + L  GN
Sbjct: 200 LLANLFRMLFRKFNRDVYRYLQKCVETHKEFNVSVGVKHQTITNGLKYSLATGN 253


>gi|55583708|gb|AAV53373.1| RNA polymerase II second largest subunit [Hymenopellis radicata]
          Length = 669

 Score =  213 bits (543), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 107/265 (40%), Positives = 162/265 (61%), Gaps = 7/265 (2%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 330  IIPFPDHNQSPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKF 389

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   V K+   Q  +  
Sbjct: 390  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDVEKKSGVQALEEF 449

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSA-----ISMATP 1088
              P  E+  R     +  L+ DG++APG  +    +++ K+ P    S        M T 
Sbjct: 450  EKPSRESTLRMKHGTYDKLEDDGLIAPGTGVVGEDIIIGKTAPIPPDSEELGQRTRMHT- 508

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
              ++V    K +    +++VL+++N++    +K+ +R TR P+ GDKF+SRHGQKG IG+
Sbjct: 509  -RRDVSTPLKSTESGIIDQVLITTNADGQKFVKVRVRATRIPQTGDKFASRHGQKGTIGI 567

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
               QEDMPF   GI PDII+NPH +
Sbjct: 568  TYRQEDMPFTCEGIVPDIIINPHAI 592



 Score =  145 bits (367), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 69/165 (41%), Positives = 101/165 (61%)

Query: 1178 RITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV 1237
            R+   ++V    K +    +++VL+++N++    +K+ +R TR P+ GDKF+SRHGQKG 
Sbjct: 505  RMHTRRDVSTPLKSTESGIIDQVLITTNADGQKFVKVRVRATRIPQTGDKFASRHGQKGT 564

Query: 1238 IGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGG 1297
            IG+   QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + G+  + T F  
Sbjct: 565  IGITYRQEDMPFTCEGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGHEGDATPFTD 624

Query: 1298 TKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQK 1342
              +  V   L + GY  +G ++ Y G TG  L+A +Y GP YYQ+
Sbjct: 625  LTVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQR 669



 Score =  109 bits (272), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 91/151 (60%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F+  + +++ TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 24  EFNPNDGVKRQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT 83

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM  I+  +    +++ +  
Sbjct: 84  PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEE 143

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E +        S+     VFVNG+  G+
Sbjct: 144 WGLESL---EENAHSTTPFTKVFVNGVWMGV 171



 Score = 90.9 bits (224), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 48/121 (39%), Positives = 66/121 (54%), Gaps = 14/121 (11%)

Query: 706 VNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQ 765
            N+G     A  ++GI     TH EI P  +LG+CA I              +P+P HNQ
Sbjct: 293 ANDGEFDPAARLKAGINAHTWTHCEIHPSMILGICASI--------------IPFPDHNQ 338

Query: 766 APRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQ 825
           +PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  
Sbjct: 339 SPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNA 398

Query: 826 I 826
           I
Sbjct: 399 I 399


>gi|374327622|ref|YP_005085822.1| DNA-directed RNA polymerase subunit beta [Pyrobaculum sp. 1860]
 gi|356642891|gb|AET33570.1| DNA-directed RNA polymerase subunit beta [Pyrobaculum sp. 1860]
          Length = 1127

 Score =  213 bits (543), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 113/310 (36%), Positives = 181/310 (58%), Gaps = 10/310 (3%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++PY  HNQ+PRN Y+ AM KQ++G    N   ++D+  + L Y +RP+V ++ + +  +
Sbjct: 661  IIPYLEHNQSPRNQYEAAMAKQSLGLPQSNLLYKLDSRGHMLYYPERPIVTTRGLELIGY 720

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             K PAGQNA +A+++Y+GY+IEDA+I+NKAS++RG  R + YR  +   ++YP    DRI
Sbjct: 721  SKRPAGQNAVVALLTYTGYNIEDAVILNKASVERGMFRSVFYRTYETEEQKYPGGEEDRI 780

Query: 1034 LGPLLEADTRKPVYR----HRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMA--T 1087
              P    D+    YR    +  LD+DGI  P   +   +VL+ K+ P    + +      
Sbjct: 781  EIP----DSSVKGYRGPEAYSHLDEDGIAPPEVYVSSNEVLIGKTSPPRFYTTLEAERIL 836

Query: 1088 PEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
             E ++  V+ +      +++V+V+ + E   L+K+ LR+ R PE+GDKF+SRHGQKGV+G
Sbjct: 837  KERRDASVAVRRGERGIVDRVIVTESPEGNKLVKVRLRELRIPELGDKFASRHGQKGVLG 896

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSE 1207
            +++  EDMPF E GI PDII+NPH L     + +  E      G+   +L         +
Sbjct: 897  MLLRHEDMPFTEDGIVPDIIVNPHALPSRMTVAQLLESMAGKVGASTGHLVDATPFEGVK 956

Query: 1208 DAFLIKMLLR 1217
            +  L K+LL+
Sbjct: 957  EEDLRKLLLK 966



 Score =  207 bits (526), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 99/194 (51%), Positives = 137/194 (70%)

Query: 1179 ITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVI 1238
            + E ++  V+ +      +++V+V+ + E   L+K+ LR+ R PE+GDKF+SRHGQKGV+
Sbjct: 836  LKERRDASVAVRRGERGIVDRVIVTESPEGNKLVKVRLRELRIPELGDKFASRHGQKGVL 895

Query: 1239 GLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGT 1298
            G+++  EDMPF E GI PDII+NPH  PSRMTV +L+E +AGK G   G+  + T F G 
Sbjct: 896  GMLLRHEDMPFTEDGIVPDIIVNPHALPSRMTVAQLLESMAGKVGASTGHLVDATPFEGV 955

Query: 1299 KLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGP 1358
            K  D+++ L++ GY + GK++ YSGITGE L A I+ G VYYQKL HMV DKIHAR+RGP
Sbjct: 956  KEEDLRKLLLKLGYKWDGKEVMYSGITGERLVADIFIGVVYYQKLHHMVADKIHARARGP 1015

Query: 1359 RVVLTRQPTGRRWK 1372
              +LTRQPT  R +
Sbjct: 1016 VQILTRQPTEGRAR 1029



 Score =  102 bits (255), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 83/253 (32%), Positives = 123/253 (48%), Gaps = 28/253 (11%)

Query: 97  TMVTDETSKLKDSPEIRDKWKLVLSFLKEKGLVKPHI-----DSFDYFINVEIKKLMQAN 151
           T V DE    K   EIR K  L+L  +  KGLV+ H+     D  D+  N  ++ +    
Sbjct: 317 TTVADE----KRQQEIRLKKALMLGQIV-KGLVELHLGRRKPDDKDHVANKRVRLVGDLM 371

Query: 152 ANIYSDVDPLFYLKYLDIHVG--IADKIIPKIKAAQFDIVNHMRQDTITNALTAAIQTGN 209
             ++  V   F L+ L   +    A   IP I+         +R D IT  +  A+ TGN
Sbjct: 372 TQLFRTVFKQF-LQELKSQLEKYYARGRIPHIQTV-------VRPDIITERVRQALATGN 423

Query: 210 WTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVSGPRSLQGSQWGMLCPSD 269
           W        + GV+Q+L R +Y+S L  + R+ S   +T+     R L  +QWG LC  +
Sbjct: 424 WV-----GGKTGVSQILDRTNYLSTLSYLRRVVSSLSRTQPHFEARDLHPTQWGRLCAVE 478

Query: 270 TPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMFNGEELSSPGVYLVFVNG 329
           TPEG+  GLVKNLAL+  ITT  DE  + +++Y +G+  I     E ++   VYL   NG
Sbjct: 479 TPEGQNVGLVKNLALLAEITTGVDEGEVEQMLYGMGVVPILKARDEGVAGAEVYL---NG 535

Query: 330 ILAGITCHHKEVC 342
            L G+  +  E+ 
Sbjct: 536 RLIGVHPNPDELA 548



 Score = 88.6 bits (218), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 75/135 (55%), Gaps = 15/135 (11%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKR 751
           +DD +  G +EYLD +E  ++HIA ++  +     TH+EI P ++LG  A I        
Sbjct: 611 WDDLVKTGVVEYLDADEEENAHIA-TDPHVDLSNYTHVEIIPSSILGAVASI-------- 661

Query: 752 FHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTI 811
                 +PY  HNQ+PRN Y+ AM KQ++G    N   ++D+  + L Y +RP+V ++ +
Sbjct: 662 ------IPYLEHNQSPRNQYEAAMAKQSLGLPQSNLLYKLDSRGHMLYYPERPIVTTRGL 715

Query: 812 RITNFHKLPAGKCQI 826
            +  + K PAG+  +
Sbjct: 716 ELIGYSKRPAGQNAV 730



 Score = 43.1 bits (100), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 33/67 (49%)

Query: 340 EVCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIML 399
           EV  P I+ES        P E RLR+ TYSAP+ +        +        IG +PIM+
Sbjct: 78  EVGWPRIKESDGSESLIYPMEARLRNATYSAPLYLTATLYVDDEPYATETFYIGELPIMV 137

Query: 400 QSSKCVL 406
           +S +C L
Sbjct: 138 KSKRCNL 144



 Score = 42.0 bits (97), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 7/65 (10%)

Query: 472 NMRFKMKAMYLAVMIRRMV---LALSDPDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRF 528
            +R K KA+ L  +++ +V   L    PD   D+D+  NKR+ L G L++ +F  VFK+F
Sbjct: 327 EIRLK-KALMLGQIVKGLVELHLGRRKPD---DKDHVANKRVRLVGDLMTQLFRTVFKQF 382

Query: 529 NSELK 533
             ELK
Sbjct: 383 LQELK 387


>gi|258562134|gb|ACV81789.1| RNA polymerase II second largest subunit [Tephrocybe rancida]
          Length = 622

 Score =  213 bits (543), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 105/263 (39%), Positives = 160/263 (60%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PR TYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 327  IIPFPDHNQSPRXTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKF 386

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 387  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEF 446

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  ++  R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 447  EKPARDSTLRMKHGTYDKLEDDGLIAPGTGVAGEDIIIGKTAPIPPDSEELGQRTRTHTR 506

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ +R TR P+ GDKF+SRHGQKG IG+  
Sbjct: 507  RDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRSTRIPQTGDKFASRHGQKGTIGITY 566

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 567  RQEDMPFTAEGIVPDIIINPHAI 589



 Score =  119 bits (299), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 54/113 (47%), Positives = 74/113 (65%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++NSE    +K+ +R TR P+ GDKF+SRHGQKG IG+  
Sbjct: 507  RDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRSTRIPQTGDKFASRHGQKGTIGITY 566

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAF 1295
             QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F
Sbjct: 567  RQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPF 619



 Score =  112 bits (279), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 91/151 (60%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 22  EFNLALAVKHQTITNGLKYSLATGNWGDQKKSMSAKAGVSQVLNRYTYASTLSHLRRCNT 81

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM+ I+  +    +++ +  
Sbjct: 82  PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSYSAPVIEFLEE 141

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E +        SS     VFVNG+  G+
Sbjct: 142 WGLESL---EENAHSSTPCTKVFVNGVWMGV 169



 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/109 (40%), Positives = 61/109 (55%), Gaps = 14/109 (12%)

Query: 718 ESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGK 777
           ++GI     TH EI P  +LG+CA I              +P+P HNQ+PR TYQ AMGK
Sbjct: 302 KAGINSHTWTHCEIHPSMILGICASI--------------IPFPDHNQSPRXTYQSAMGK 347

Query: 778 QAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
           QAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 348 QAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAI 396


>gi|300394768|gb|ADK11922.1| DNA-directed RNA polymerase II subunit two, partial [Leucogyrophana
            mollusca]
          Length = 875

 Score =  213 bits (543), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 105/263 (39%), Positives = 160/263 (60%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 531  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKF 590

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 591  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEF 650

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  ++ DG++APG  +    +++ K+ P    S        T   
Sbjct: 651  EKPTRDTTLRMKHGTYDKIEDDGLIAPGTGVSGEDIIIGKTAPIPPDSEELGQRTRTHTR 710

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 711  RDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITY 770

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PD I+NPH +
Sbjct: 771  RQEDMPFTAEGIVPDXIINPHAI 793



 Score =  158 bits (400), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 75/165 (45%), Positives = 103/165 (62%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 711  RDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITY 770

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PD I+NPH  P RMT+G L+E L  K   + GN  + T F    +  
Sbjct: 771  RQEDMPFTAEGIVPDXIINPHAIPXRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVES 830

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMV 1347
            V   L + GY  +G ++ Y G TG  L+A +Y GP YYQ+LKHMV
Sbjct: 831  VSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMV 875



 Score =  111 bits (277), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 91/151 (60%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKM-ERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 224 EFNLSLAVKHQTITNGLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNT 283

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM+ I+  +    +++ +  
Sbjct: 284 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSYSAPVIEFLEE 343

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E +        SS     VFVNG+  G+
Sbjct: 344 WGLESL---EENAHSSTPCTKVFVNGVWMGV 371



 Score = 90.5 bits (223), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 89/176 (50%), Gaps = 22/176 (12%)

Query: 707 NEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQA 766
           N+ +    A  ++GI     TH EI P  +LGVCA I              +P+P HNQ+
Sbjct: 495 NDADYDPAARLKAGINAHTWTHCEIHPSMILGVCASI--------------IPFPDHNQS 540

Query: 767 PRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
           PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 541 PRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAI 600

Query: 827 SPGGAEELTARESCHEVLKIISFSISVAVFDSVWLG-----DVKQGVHQLSEEKEP 877
               A    +  +  + + +   SI   +F S++       + K GV QL E ++P
Sbjct: 601 V---AILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKP 653



 Score = 60.1 bits (144), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 58/114 (50%), Gaps = 14/114 (12%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A++ L    + H+ +       KA +   MI R++LA  +   LDDRD++G KRL+LAG 
Sbjct: 135 AQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAALERRELDDRDHFGKKRLDLAGP 194

Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYGN 555
           LL+ +F  +FK+   ++           KE NLS  V    + +G  + L  GN
Sbjct: 195 LLANLFRMLFKKLTRDVYRYLQKCVETHKEFNLSLAVKHQTITNGLKYSLATGN 248


>gi|52699812|gb|AAU86968.1| DNA-dependent RNA polymerase II second largest subunit [Glypholecia
            scabra]
          Length = 722

 Score =  213 bits (543), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 106/264 (40%), Positives = 165/264 (62%), Gaps = 5/264 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMG QAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 372  IIPFPDHNQSPRNTYQSAMGXQAMGVFLTNYDQRMDTMANILYYPQKPLATTRSMEFLKF 431

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR+     K+      ++ 
Sbjct: 432  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSVVEQF 491

Query: 1034 LGPLLEADTRKPVY-RHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAISMATPEY- 1090
              P + +DT K  +  +  LD DGIVAPG ++    +++ K+ P       +   T  + 
Sbjct: 492  EKP-MRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKLHV 550

Query: 1091 -KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             ++V    + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHGQKG IG+ 
Sbjct: 551  KRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGIT 610

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
              QEDMPF + GI PD+I+NPH +
Sbjct: 611  YRQEDMPFTKEGIVPDLIINPHAI 634



 Score =  158 bits (400), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 87/240 (36%), Positives = 133/240 (55%), Gaps = 13/240 (5%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESG-ICPDIIMNPHGL 1173
            ++ Q  +P   D    +HG        G++  G+ V  ED+   ++  I PD       L
Sbjct: 487  VVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPD----AEEL 542

Query: 1174 KGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
                ++   ++V    + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHG
Sbjct: 543  GQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHG 602

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGT 1293
            QKG IG+   QEDMPF + GI PD+I+NPH  PSRMT+  LIE    K   + G   + T
Sbjct: 603  QKGTIGITYRQEDMPFTKEGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDAT 662

Query: 1294 AFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHA 1353
             F    +  V + L  HGY  +G ++ Y+G TG  L A ++ GP YYQ+L+HMV  KI A
Sbjct: 663  PFTEVTVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDXKIXA 722



 Score =  114 bits (285), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 90/151 (59%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW   ++    + GV+QVL+R ++ S L  + R N+
Sbjct: 40  EFNLTLGVKSTTITNGLKYSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNT 99

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT     + ++  M  
Sbjct: 100 PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSQPIIDFMIQ 159

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
             +E +  +  E   SP    VFVNG+  G+
Sbjct: 160 RNMEVLEEY--EPQRSPNATKVFVNGVWVGV 188



 Score = 88.2 bits (217), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/100 (42%), Positives = 57/100 (57%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMG QAMG    N
Sbjct: 356 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGXQAMGVFLTN 401

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 402 YDQRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 441


>gi|56694328|gb|AAW22904.1| RNA polymerase II second largest subunit [Ephedra distachya]
          Length = 551

 Score =  213 bits (543), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 106/269 (39%), Positives = 164/269 (60%), Gaps = 19/269 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q P+V ++ +   +F
Sbjct: 188  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQXPLVTTRAMEHLHF 247

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L +R+ +           ++ 
Sbjct: 248  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR---------DEEKK 298

Query: 1034 LGPLLEADTRKPVYRHRA---------LDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            +G L++ D  +P   + A         LD+DG+  PG ++    V++ K+ P     ++ 
Sbjct: 299  MGSLVKEDFGRPSRENTAGMRHGSYDKLDEDGLAPPGTRVSGEDVIIGKTTPVTQEESMG 358

Query: 1085 MATPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKG 1144
                  ++   S + S    +++VL+++N +    +K+ +R  R P+IGDKFSSRHGQKG
Sbjct: 359  -GRYTRRDQSTSMRHSESGMVDQVLLTTNQDGLRFVKIRMRSVRIPQIGDKFSSRHGQKG 417

Query: 1145 VIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
             +G+   QEDMP+   G+ PDII+NPH +
Sbjct: 418  TVGMTYTQEDMPWTIEGVSPDIIVNPHAI 446



 Score =  179 bits (454), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 85/188 (45%), Positives = 120/188 (63%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++   S + S    +++VL+++N +    +K+ +R  R P+IGDKFSSRHGQKG +G+  
Sbjct: 364  RDQSTSMRHSESGMVDQVLLTTNQDGLRFVKIRMRSVRIPQIGDKFSSRHGQKGTVGMTY 423

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMP+   G+ PDII+NPH  PSRMT+G+LIE + GK     G   + T F    + +
Sbjct: 424  TQEDMPWTIEGVSPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDN 483

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
            + + L + GY  +G +  Y+G TG  L A I+ GP YYQ+LKHMV DKIH+R RGP  +L
Sbjct: 484  ISKALHKCGYQMRGFETMYNGHTGRRLPAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQIL 543

Query: 1363 TRQPTGRR 1370
            TRQP   R
Sbjct: 544  TRQPAEGR 551



 Score = 97.8 bits (242), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 55/141 (39%), Positives = 75/141 (53%), Gaps = 24/141 (17%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPG----------VTTHLEIAPFTLLGVCA 741
           + D +  G IEY+D  E   + I+++ + +               TH EI P  +LGVCA
Sbjct: 127 WHDLVARGFIEYVDTEEEETTMISMTINDLVQARRHPEEAYTTTYTHCEIHPSLILGVCA 186

Query: 742 GIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYA 801
            I              +P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y 
Sbjct: 187 SI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYP 232

Query: 802 QRPMVESKTIRITNFHKLPAG 822
           Q P+V ++ +   +F +LPAG
Sbjct: 233 QXPLVTTRAMEHLHFRQLPAG 253


>gi|103001903|gb|ABF71526.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
            flavum]
          Length = 699

 Score =  213 bits (543), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 107/265 (40%), Positives = 166/265 (62%), Gaps = 7/265 (2%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMG QAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 356  IIPFPDHNQSPRNTYQSAMGXQAMGVFLTNYDQRMDTMANILYYPQKPLATTRSMEFLKF 415

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR+     K+      ++ 
Sbjct: 416  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSVVEQF 475

Query: 1034 LGPLLEADTRKPVY-RHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPE--- 1089
              P + +DT K  +  +  LD DGIVAPG ++    +++ K+ P IS  A  +       
Sbjct: 476  EKP-MRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAP-ISPDAEELGQRTKLH 533

Query: 1090 -YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
              ++V    + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHGQKG IG+
Sbjct: 534  VKRDVSTPLRSTENGIVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGI 593

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
               QEDMPF + G+ PD+I+NPH +
Sbjct: 594  TYRQEDMPFTKEGVVPDLIINPHAI 618



 Score =  149 bits (377), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 81/233 (34%), Positives = 128/233 (54%), Gaps = 13/233 (5%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESG-ICPDIIMNPHGL 1173
            ++ Q  +P   D    +HG        G++  G+ V  ED+   ++  I PD       L
Sbjct: 471  VVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPISPD----AEEL 526

Query: 1174 KGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
                ++   ++V    + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHG
Sbjct: 527  GQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHG 586

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGT 1293
            QKG IG+   QEDMPF + G+ PD+I+NPH  PSRMT+  LIE    K   + G   + T
Sbjct: 587  QKGTIGITYRQEDMPFTKEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDAT 646

Query: 1294 AFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHM 1346
             F    +  V + L  HGY  +G ++ Y+G TG  L A ++ GP YYQ+ +HM
Sbjct: 647  PFTEVTVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRXRHM 699



 Score =  114 bits (286), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 91/151 (60%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW   ++    + GV+QVL+R ++ S L  + R N+
Sbjct: 33  EFNLTLGVKSTTITNGLKYSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNT 92

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT     + +++ M  
Sbjct: 93  PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIEFMIQ 152

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
             +E +  +  E   SP    VFVNG+  G+
Sbjct: 153 RNMEVLEEY--EPQRSPNATKVFVNGVWVGV 181



 Score = 88.2 bits (217), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/100 (42%), Positives = 57/100 (57%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMG QAMG    N
Sbjct: 340 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGXQAMGVFLTN 385

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 386 YDQRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 425


>gi|103001775|gb|ABF71521.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
            chlorophanum]
          Length = 697

 Score =  213 bits (543), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 106/264 (40%), Positives = 165/264 (62%), Gaps = 5/264 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 353  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDQRMDTMANILYYPQKPLATTRSMEFLKF 412

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR+     K+      ++ 
Sbjct: 413  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSVVEQF 472

Query: 1034 LGPLLEADTRKPVY-RHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAISMATPEY- 1090
              P + +DT K  +  +  LD DGIVAPG ++    +++ K+ P       +   T  + 
Sbjct: 473  EKP-MRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKLHV 531

Query: 1091 -KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             ++V    + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHGQKG IG+ 
Sbjct: 532  KRDVSTPLRSTENGIVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGIT 591

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
              QEDMPF   G+ PD+I+NPH +
Sbjct: 592  YRQEDMPFTMEGVVPDLIINPHAI 615



 Score =  153 bits (387), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 83/234 (35%), Positives = 129/234 (55%), Gaps = 13/234 (5%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESG-ICPDIIMNPHGL 1173
            ++ Q  +P   D    +HG        G++  G+ V  ED+   ++  I PD       L
Sbjct: 468  VVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPD----AEEL 523

Query: 1174 KGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
                ++   ++V    + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHG
Sbjct: 524  GQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHG 583

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGT 1293
            QKG IG+   QEDMPF   G+ PD+I+NPH  PSRMT+  LIE    K   + G   + T
Sbjct: 584  QKGTIGITYRQEDMPFTMEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDAT 643

Query: 1294 AFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMV 1347
             F    +  V + L  HGY  +G ++ Y+G TG  L A ++ GP YYQ+L+HMV
Sbjct: 644  PFTEVTVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFXGPTYYQRLRHMV 697



 Score =  114 bits (284), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 91/151 (60%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW   ++    + GV+QVL+R ++ S L  + R N+
Sbjct: 30  EFNLTLGVKSTTITNGLKYSLATGNWGDQKKAASSKAGVSQVLNRYTFASILSHLRRTNT 89

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT     + +++ M  
Sbjct: 90  PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIEFMIQ 149

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
             +E +  +  E   SP    VFVNG+  G+
Sbjct: 150 RNMEVLEEY--EPQRSPNATKVFVNGVWVGV 178



 Score = 90.1 bits (222), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 337 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 382

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 383 YDQRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 422


>gi|120561265|gb|ABM27017.1| RNA polymerase II second largest subunit, partial [Coelomomyces
            stegomyiae]
          Length = 862

 Score =  213 bits (543), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 106/262 (40%), Positives = 162/262 (61%), Gaps = 2/262 (0%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL   L Y Q+P+V ++ ++   F
Sbjct: 534  IIPFPDHNQSPRNTYQSAMGKQAMGVYLTNFQLRMDTLANILYYPQKPLVTTRNMQYLRF 593

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+ +YSGY+ ED+LIM+++++DRG  R + YR+     K+      +  
Sbjct: 594  RELPAGQNAIVAIAAYSGYNQEDSLIMSQSAIDRGLFRSIYYRSYVDAEKKTGFTQLEEF 653

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPT-ISVSAISMATPEY-K 1091
              P  E   +     +  L+ DG VAPG ++    +++ K+ P  +  S +   T +  K
Sbjct: 654  ERPTRETTLKLRQGSYEKLEDDGFVAPGTRVNGDDIIIGKTAPLPMDHSELGTRTTQTKK 713

Query: 1092 EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVE 1151
            +V    K S    ++ V+V++N +    +K+ +R TR P+IGDKF+SRHGQKG +G+   
Sbjct: 714  DVSTGLKSSENGIVDHVMVTTNGDGYKFVKIRVRSTRVPQIGDKFASRHGQKGTVGMTYR 773

Query: 1152 QEDMPFNESGICPDIIMNPHGL 1173
            QEDMPF   G+ PD+I+NPH +
Sbjct: 774  QEDMPFTAEGLTPDLIINPHAI 795



 Score =  133 bits (334), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 62/149 (41%), Positives = 92/149 (61%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            K+V    K S    ++ V+V++N +    +K+ +R TR P+IGDKF+SRHGQKG +G+  
Sbjct: 713  KDVSTGLKSSENGIVDHVMVTTNGDGYKFVKIRVRSTRVPQIGDKFASRHGQKGTVGMTY 772

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   G+ PD+I+NPH  PSRMT+G L+E L GK   + G+  + T F    +  
Sbjct: 773  RQEDMPFTAEGLTPDLIINPHAIPSRMTIGHLVECLLGKVSSLTGSEGDATPFTDVTVQQ 832

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEA 1331
            + + L   GY  +G ++ Y+G TG+ L A
Sbjct: 833  ISDLLRECGYQQRGFEVMYNGHTGKKLSA 861



 Score =  108 bits (271), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/159 (38%), Positives = 96/159 (60%), Gaps = 12/159 (7%)

Query: 186 FDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINSQ 244
           F++   +  +TITN L  A+ TGNW  ++  ME R GV+QVL+R ++ S L  + R+N+ 
Sbjct: 230 FNLNMAINSNTITNGLRYALATGNWGDQKKFMETRAGVSQVLNRYTFASTLSHLRRLNTP 289

Query: 245 FEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNI 304
             +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM+ I+  +  + + + +   
Sbjct: 290 IGREGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSIISVGSASEPIHEFLSEW 349

Query: 305 GIEHIAMFNGEELSSPGV---YLVFVNGILAGITCHHKE 340
             E++     EE+S   +     VFVNG   GI   H+E
Sbjct: 350 TTENL-----EEISPSTIGPNTKVFVNGAWIGI---HRE 380



 Score = 95.5 bits (236), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 99/219 (45%), Gaps = 50/219 (22%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGI------------------------RPG--- 724
           ++  L  G +EYLD  E     I++S   +                        +PG   
Sbjct: 455 WEKLLINGIVEYLDTEEEETVMISMSPDDLAEARGALIFDKSLDRDRTARLKARKPGDYC 514

Query: 725 -VTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCI 783
              TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG  
Sbjct: 515 KTWTHCEIHPAMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVY 560

Query: 784 GYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQISPGGAEELTARESCHEV 843
             N Q R+DTL   L Y Q+P+V ++ ++   F +LPAG+  I    A     +E   + 
Sbjct: 561 LTNFQLRMDTLANILYYPQKPLVTTRNMQYLRFRELPAGQNAIVAIAAYSGYNQE---DS 617

Query: 844 LKIISFSISVAVFDSVWL-----GDVKQGVHQLSEEKEP 877
           L +   +I   +F S++       + K G  QL E + P
Sbjct: 618 LIMSQSAIDRGLFRSIYYRSYVDAEKKTGFTQLEEFERP 656



 Score = 47.4 bits (111), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 14/114 (12%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A D L    + HI         K+ ++  MI R++        +DDRD++G KRL+LAG 
Sbjct: 140 ACDLLERELLPHIGTTPGCETRKSYFIGYMINRLLSTALGRREVDDRDHFGKKRLDLAGP 199

Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLSGVVN---LVSGWWFELKYGN 555
           LL+ +F   F++   ++           +  NL+  +N   + +G  + L  GN
Sbjct: 200 LLASLFRTFFQKLTKDVGRYFTNCLERSRPFNLNMAINSNTITNGLRYALATGN 253


>gi|56694316|gb|AAW22898.1| RNA polymerase II second largest subunit [Encephalartos barteri]
          Length = 527

 Score =  213 bits (543), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 109/261 (41%), Positives = 160/261 (61%), Gaps = 1/261 (0%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+  ++ +   +F
Sbjct: 189  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLXTTRAMEHLHF 248

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L YR+ +   K+      +  
Sbjct: 249  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFYRSYRDEEKRMGTLVKEEF 308

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMP-TISVSAISMATPEYKE 1092
              P  E  T      +  LD DG+  PG ++    V++ K+ P T   S    A    ++
Sbjct: 309  GRPNRENTTGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPVTQDESGGQAARYTKRD 368

Query: 1093 VPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQ 1152
               S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   Q
Sbjct: 369  QSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYCQ 428

Query: 1153 EDMPFNESGICPDIIMNPHGL 1173
            EDMP+   GI PDII+NPH +
Sbjct: 429  EDMPWTVEGITPDIIVNPHAI 449



 Score =  143 bits (361), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 68/161 (42%), Positives = 101/161 (62%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++   S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+  
Sbjct: 367  RDQSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTY 426

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMP+   GI PDII+NPH  PSRMT+G+LIE + GK     G   + T F    + +
Sbjct: 427  CQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDN 486

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKL 1343
            + + L + GY  +G +  Y+G TG  L A I+ GP YYQ+L
Sbjct: 487  ISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRL 527



 Score = 93.6 bits (231), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 54/142 (38%), Positives = 76/142 (53%), Gaps = 25/142 (17%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGI-----RPGVT------THLEIAPFTLLGVC 740
           + + + +G IEY+D  E   + I+++ S +      P         TH EI P  +LGVC
Sbjct: 127 WHELVTKGFIEYVDTEEEETTMISMTISDLVNARNSPPTAASIVKYTHCEIHPSLILGVC 186

Query: 741 AGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVY 800
             I              +P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y
Sbjct: 187 XSI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYY 232

Query: 801 AQRPMVESKTIRITNFHKLPAG 822
            Q+P+  ++ +   +F +LPAG
Sbjct: 233 PQKPLXTTRAMEHLHFRQLPAG 254


>gi|2736127|gb|AAB94064.1| RPB140 [Marchantia polymorpha]
          Length = 555

 Score =  213 bits (543), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 108/261 (41%), Positives = 160/261 (61%), Gaps = 1/261 (0%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 208  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTQAMAHLHF 267

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R + YR+ +   K+      +  
Sbjct: 268  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSIFYRSYRDEEKKQGTLVKEEF 327

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYK-E 1092
              P  E  T      +  LD DG+  PG ++    V++ K+ P       S A    K +
Sbjct: 328  ERPNRENTTGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPLPQDETGSQAQRYTKRD 387

Query: 1093 VPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQ 1152
                 + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   Q
Sbjct: 388  QSTCLRHSESGMIDQVLLTTNADGLRFVKIRVRSIRIPQIGDKFSSRHGQKGTVGMTYTQ 447

Query: 1153 EDMPFNESGICPDIIMNPHGL 1173
            EDMP+ + GI PDII+NPH +
Sbjct: 448  EDMPWTQEGITPDIIVNPHAI 468



 Score =  164 bits (415), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 74/156 (47%), Positives = 107/156 (68%)

Query: 1197 LEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICP 1256
            +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   QEDMP+ + GI P
Sbjct: 400  IDQVLLTTNADGLRFVKIRVRSIRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTQEGITP 459

Query: 1257 DIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQG 1316
            DII+NPH  PSRMT+G+LIE + GK     G   + T F    + ++ + L + GY  +G
Sbjct: 460  DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG 519

Query: 1317 KDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIH 1352
             ++ Y+G TG  L A+I+ GP YYQ+LKHMV DKIH
Sbjct: 520  FEVMYNGHTGRRLYAHIFLGPTYYQRLKHMVDDKIH 555



 Score = 96.7 bits (239), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 61/171 (35%), Positives = 84/171 (49%), Gaps = 39/171 (22%)

Query: 677 RPTFLNMHQFLGFKRFD---------------DFLYEGKIEYLDVNEGNDSHIAVSESGI 721
           RP F+   Q L  K+ D               + + +G IEY+D  E   + I+++ S +
Sbjct: 117 RPLFIVEKQRLLIKKSDVRALQLKEASESGWHELVAKGFIEYVDTEEEETTMISMTISDL 176

Query: 722 RPG----------VTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTY 771
                          TH EI P  +LGVC  I              +P+P HNQ+PRNTY
Sbjct: 177 VNARNNPEEAYSKTYTHCEIHPSMILGVCGSI--------------IPFPDHNQSPRNTY 222

Query: 772 QCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAG 822
           Q AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F +LPAG
Sbjct: 223 QSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTQAMAHLHFRQLPAG 273



 Score = 69.7 bits (169), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/76 (47%), Positives = 47/76 (61%), Gaps = 8/76 (10%)

Query: 262 WGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMFNGEELSS-- 319
           WGM+CP++TPEG+ACGLVKNLALM HIT  +    +L+ +     E  +  N EE+S   
Sbjct: 1   WGMMCPAETPEGQACGLVKNLALMAHITVGSAANPILEFL-----EEWSTENFEEISPAV 55

Query: 320 -PGVYLVFVNGILAGI 334
            P    +FVNG   GI
Sbjct: 56  IPQSTKIFVNGCWVGI 71


>gi|103001255|gb|ABF71499.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
            chlorophanum]
          Length = 691

 Score =  213 bits (543), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 106/264 (40%), Positives = 165/264 (62%), Gaps = 5/264 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 356  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDQRMDTMANILYYPQKPLATTRSMEFLKF 415

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR+     K+      ++ 
Sbjct: 416  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSVVEQF 475

Query: 1034 LGPLLEADTRKPVY-RHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAISMATPEY- 1090
              P + +DT K  +  +  LD DGIVAPG ++    +++ K+ P       +   T  + 
Sbjct: 476  EKP-MRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKLHV 534

Query: 1091 -KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             ++V    + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHGQKG IG+ 
Sbjct: 535  KRDVSTPLRSTENGIVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGIT 594

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
              QEDMPF   G+ PD+I+NPH +
Sbjct: 595  YRQEDMPFTMEGVVPDLIINPHAI 618



 Score =  135 bits (339), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 120/225 (53%), Gaps = 13/225 (5%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESG-ICPDIIMNPHGL 1173
            ++ Q  +P   D    +HG        G++  G+ V  ED+   ++  I PD       L
Sbjct: 471  VVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDA----EEL 526

Query: 1174 KGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
                ++   ++V    + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHG
Sbjct: 527  GQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHG 586

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGT 1293
            QKG IG+   QEDMPF   G+ PD+I+NPH  PSRMT+  LIE    K   + G   + T
Sbjct: 587  QKGTIGITYRQEDMPFTMEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDAT 646

Query: 1294 AFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPV 1338
             F    +  V + L  HGY  +G ++ Y+G TG  L A ++ GP 
Sbjct: 647  PFTEVTVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 691



 Score =  114 bits (286), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 91/151 (60%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW   ++    + GV+QVL+R ++ S L  + R N+
Sbjct: 33  EFNLTLGVKSTTITNGLKYSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNT 92

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT     + +++ M  
Sbjct: 93  PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIEFMIQ 152

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
             +E +  +  E   SP    VFVNG+  G+
Sbjct: 153 RNMEVLEEY--EPQRSPNATKVFVNGVWVGV 181



 Score = 90.1 bits (222), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 340 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 385

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 386 YDQRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 425


>gi|103001354|gb|ABF71503.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
            chlorophanum]
          Length = 687

 Score =  213 bits (543), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 106/264 (40%), Positives = 165/264 (62%), Gaps = 5/264 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 352  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDQRMDTMANILYYPQKPLATTRSMEFLKF 411

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR+     K+      ++ 
Sbjct: 412  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSVVEQF 471

Query: 1034 LGPLLEADTRKPVY-RHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAISMATPEY- 1090
              P + +DT K  +  +  LD DGIVAPG ++    +++ K+ P       +   T  + 
Sbjct: 472  EKP-MRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKLHV 530

Query: 1091 -KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             ++V    + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHGQKG IG+ 
Sbjct: 531  KRDVSTPLRSTENGIVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGIT 590

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
              QEDMPF   G+ PD+I+NPH +
Sbjct: 591  YRQEDMPFTMEGVVPDLIINPHAI 614



 Score =  135 bits (339), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 120/225 (53%), Gaps = 13/225 (5%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESG-ICPDIIMNPHGL 1173
            ++ Q  +P   D    +HG        G++  G+ V  ED+   ++  I PD       L
Sbjct: 467  VVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPD----AEEL 522

Query: 1174 KGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
                ++   ++V    + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHG
Sbjct: 523  GQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHG 582

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGT 1293
            QKG IG+   QEDMPF   G+ PD+I+NPH  PSRMT+  LIE    K   + G   + T
Sbjct: 583  QKGTIGITYRQEDMPFTMEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDAT 642

Query: 1294 AFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPV 1338
             F    +  V + L  HGY  +G ++ Y+G TG  L A ++ GP 
Sbjct: 643  PFTEVTVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 687



 Score =  114 bits (286), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 91/151 (60%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW   ++    + GV+QVL+R ++ S L  + R N+
Sbjct: 29  EFNLTLGVKSTTITNGLKYSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNT 88

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT     + +++ M  
Sbjct: 89  PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIEFMIQ 148

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
             +E +  +  E   SP    VFVNG+  G+
Sbjct: 149 RNMEVLEEY--EPQRSPNATKVFVNGVWVGV 177



 Score = 90.1 bits (222), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 336 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 381

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 382 YDQRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 421


>gi|83415447|gb|ABC17931.1| RNA polymerase II second largest subunit precursor, partial
            [Coelomomyces stegomyiae]
          Length = 1080

 Score =  213 bits (543), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 106/262 (40%), Positives = 162/262 (61%), Gaps = 2/262 (0%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL   L Y Q+P+V ++ ++   F
Sbjct: 344  IIPFPDHNQSPRNTYQSAMGKQAMGVYLTNFQLRMDTLANILYYPQKPLVTTRNMQYLRF 403

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+ +YSGY+ ED+LIM+++++DRG  R + YR+     K+      +  
Sbjct: 404  RELPAGQNAIVAIAAYSGYNQEDSLIMSQSAIDRGLFRSIYYRSYVDAEKKTGFTQLEEF 463

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMP-TISVSAISMATPEY-K 1091
              P  E   +     +  L+ DG VAPG ++    +++ K+ P  +  S +   T +  K
Sbjct: 464  ERPTRETTLKLRQGSYEKLEDDGFVAPGTRVNGDDIIIGKTAPLPMDHSELGTRTTQTKK 523

Query: 1092 EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVE 1151
            +V    K S    ++ V+V++N +    +K+ +R TR P+IGDKF+SRHGQKG +G+   
Sbjct: 524  DVSTGLKSSENGIVDHVMVTTNGDGYKFVKIRVRSTRVPQIGDKFASRHGQKGTVGMTYR 583

Query: 1152 QEDMPFNESGICPDIIMNPHGL 1173
            QEDMPF   G+ PD+I+NPH +
Sbjct: 584  QEDMPFTAEGLTPDLIINPHAI 605



 Score =  167 bits (423), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 79/182 (43%), Positives = 111/182 (60%)

Query: 1171 HGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSS 1230
            H   G       K+V    K S    ++ V+V++N +    +K+ +R TR P+IGDKF+S
Sbjct: 511  HSELGTRTTQTKKDVSTGLKSSENGIVDHVMVTTNGDGYKFVKIRVRSTRVPQIGDKFAS 570

Query: 1231 RHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYK 1290
            RHGQKG +G+   QEDMPF   G+ PD+I+NPH  PSRMT+G L+E L GK   + G+  
Sbjct: 571  RHGQKGTVGMTYRQEDMPFTAEGLTPDLIINPHAIPSRMTIGHLVECLLGKVSSLTGSEG 630

Query: 1291 EGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDK 1350
            + T F    +  + + L   GY  +G ++ Y+G TG+ L A I+ GP YYQ+LKHMV DK
Sbjct: 631  DATPFTDVTVQQISDLLRECGYQQRGFEVMYNGHTGKKLSAQIFLGPTYYQRLKHMVDDK 690

Query: 1351 IH 1352
            IH
Sbjct: 691  IH 692



 Score =  109 bits (272), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 63/163 (38%), Positives = 97/163 (59%), Gaps = 12/163 (7%)

Query: 182 KAAQFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTR 240
           ++  F++   +  +TITN L  A+ TGNW  ++  ME R GV+QVL+R ++ S L  + R
Sbjct: 36  RSRPFNLNMAINSNTITNGLRYALATGNWGDQKKFMETRAGVSQVLNRYTFASTLSHLRR 95

Query: 241 INSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKI 300
           +N+   +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM+ I+  +  + + + 
Sbjct: 96  LNTPIGREGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSIISVGSASEPIHEF 155

Query: 301 MYNIGIEHIAMFNGEELSSPGV---YLVFVNGILAGITCHHKE 340
           +     E     N EE+S   +     VFVNG   GI   H+E
Sbjct: 156 LSEWTTE-----NLEEISPSTIGPNTKVFVNGAWIGI---HRE 190



 Score = 95.5 bits (236), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 99/219 (45%), Gaps = 50/219 (22%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGI------------------------RPG--- 724
           ++  L  G +EYLD  E     I++S   +                        +PG   
Sbjct: 265 WEKLLINGIVEYLDTEEEETVMISMSPDDLAEARGALIFDKSLDRDRTARLKARKPGDYC 324

Query: 725 -VTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCI 783
              TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG  
Sbjct: 325 KTWTHCEIHPAMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVY 370

Query: 784 GYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQISPGGAEELTARESCHEV 843
             N Q R+DTL   L Y Q+P+V ++ ++   F +LPAG+  I    A     +E   + 
Sbjct: 371 LTNFQLRMDTLANILYYPQKPLVTTRNMQYLRFRELPAGQNAIVAIAAYSGYNQE---DS 427

Query: 844 LKIISFSISVAVFDSVWL-----GDVKQGVHQLSEEKEP 877
           L +   +I   +F S++       + K G  QL E + P
Sbjct: 428 LIMSQSAIDRGLFRSIYYRSYVDAEKKTGFTQLEEFERP 466


>gi|113957140|gb|ABI49100.1| RNA polymerase II second largest subunit [Lobaria scrobiculata]
          Length = 714

 Score =  213 bits (543), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 110/286 (38%), Positives = 167/286 (58%), Gaps = 9/286 (3%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 366  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDQRMDTMANILYYPQKPLATTRSMEFLKF 425

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S DRG  R L YR      K+      ++ 
Sbjct: 426  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSTDRGLFRSLFYRAYTDQEKRIGMNVVEQF 485

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKEV 1093
              P  +   +     +  LD DGIVAPG ++    +++ K+ P I+  A  M   +  + 
Sbjct: 486  EKPFRQDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAP-IAPDAEEMG--QRTKA 542

Query: 1094 PVSYKGSVP------SYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
             +    S P        +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHGQKG IG
Sbjct: 543  HIKRDASTPLRSTENGIVDQVLITTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIG 602

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSV 1193
            +   QEDMPF   G+ PD+I+NPH +     I    E  +S  G++
Sbjct: 603  ITYRQEDMPFTREGVVPDLIINPHAIPSRMTIAHLIECQLSKVGTL 648



 Score =  158 bits (400), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 88/238 (36%), Positives = 131/238 (55%), Gaps = 13/238 (5%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESG-ICPDIIMNPHGL 1173
            ++ Q  +P   D    +HG        G++  G+ V  ED+   ++  I PD      G 
Sbjct: 481  VVEQFEKPFRQDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPD--AEEMGQ 538

Query: 1174 KGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
            +    I      P+  + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHG
Sbjct: 539  RTKAHIKRDASTPL--RSTENGIVDQVLITTNAEGLRFVKVRMRTTKIPQIGDKFASRHG 596

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGT 1293
            QKG IG+   QEDMPF   G+ PD+I+NPH  PSRMT+  LIE    K G + G   + T
Sbjct: 597  QKGTIGITYRQEDMPFTREGVVPDLIINPHAIPSRMTIAHLIECQLSKVGTLRGLEGDAT 656

Query: 1294 AFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKI 1351
             F    +  V + L  HGY  +G +I Y G TG  + A ++ GP YYQ+L+HMV DKI
Sbjct: 657  PFTDVTVDSVSKLLRDHGYQSRGFEIMYHGHTGRKMMAQVFLGPTYYQRLRHMVDDKI 714



 Score =  115 bits (288), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 91/151 (60%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWT-IRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  T+TN L  ++ TGNW   ++    + GV+QVL+R ++ S L  + R N+
Sbjct: 42  EFNLTLGVKSTTLTNGLKYSLATGNWGGQKKAASSKAGVSQVLNRYTFASTLSHLRRTNT 101

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT     + ++  M  
Sbjct: 102 PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQ 161

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
             +E +  +  E L SP    VFVNG+  G+
Sbjct: 162 RNMEVLEEY--EPLRSPNATKVFVNGVWVGV 190



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 350 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 395

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 396 FDQRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 435


>gi|103001310|gb|ABF71501.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
            chlorophanum]
          Length = 683

 Score =  213 bits (543), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 106/264 (40%), Positives = 165/264 (62%), Gaps = 5/264 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 348  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDQRMDTMANILYYPQKPLATTRSMEFLKF 407

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR+     K+      ++ 
Sbjct: 408  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSVVEQF 467

Query: 1034 LGPLLEADTRKPVY-RHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAISMATPEY- 1090
              P + +DT K  +  +  LD DGIVAPG ++    +++ K+ P       +   T  + 
Sbjct: 468  EKP-MRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKLHV 526

Query: 1091 -KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             ++V    + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHGQKG IG+ 
Sbjct: 527  KRDVSTPLRSTENGIVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGIT 586

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
              QEDMPF   G+ PD+I+NPH +
Sbjct: 587  YRQEDMPFTMEGVVPDLIINPHAI 610



 Score =  135 bits (339), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 120/225 (53%), Gaps = 13/225 (5%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESG-ICPDIIMNPHGL 1173
            ++ Q  +P   D    +HG        G++  G+ V  ED+   ++  I PD       L
Sbjct: 463  VVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPD----AEEL 518

Query: 1174 KGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
                ++   ++V    + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHG
Sbjct: 519  GQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHG 578

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGT 1293
            QKG IG+   QEDMPF   G+ PD+I+NPH  PSRMT+  LIE    K   + G   + T
Sbjct: 579  QKGTIGITYRQEDMPFTMEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDAT 638

Query: 1294 AFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPV 1338
             F    +  V + L  HGY  +G ++ Y+G TG  L A ++ GP 
Sbjct: 639  PFTEVTVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 683



 Score =  114 bits (286), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 91/151 (60%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW   ++    + GV+QVL+R ++ S L  + R N+
Sbjct: 25  EFNLTLGVKSTTITNGLKYSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNT 84

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT     + +++ M  
Sbjct: 85  PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIEFMIQ 144

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
             +E +  +  E   SP    VFVNG+  G+
Sbjct: 145 RNMEVLEEY--EPQRSPNATKVFVNGVWVGV 173



 Score = 90.1 bits (222), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 332 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 377

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 378 YDQRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 417


>gi|341859162|gb|AEK97491.1| ribosomal polymerase II second largest subunit [Isaria tenuipes]
          Length = 704

 Score =  213 bits (543), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 103/264 (39%), Positives = 163/264 (61%), Gaps = 5/264 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 363  IIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSMEFLKF 422

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L +R+     K+      +  
Sbjct: 423  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYSDQEKKVGLNYTEIF 482

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATP----E 1089
              P  ++  R     +  LD+DGIVAPG ++    +++ K+ P I      + T     +
Sbjct: 483  EKPFHQSTLRMKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAP-IDPETQDLGTRTTAHQ 541

Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             +++    + +    +++V+V+ N+++   +K+ +R T+ P+IGDKF+SRHGQKG IG+ 
Sbjct: 542  RRDISTPLRSTENGIVDQVIVTVNADNVKYVKVRVRTTKIPQIGDKFASRHGQKGTIGVT 601

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
              QEDMPF   G+ PDII+NPH +
Sbjct: 602  YRQEDMPFTREGVTPDIIINPHAI 625



 Score =  150 bits (378), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 68/162 (41%), Positives = 104/162 (64%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            +++    + +    +++V+V+ N+++   +K+ +R T+ P+IGDKF+SRHGQKG IG+  
Sbjct: 543  RDISTPLRSTENGIVDQVIVTVNADNVKYVKVRVRTTKIPQIGDKFASRHGQKGTIGVTY 602

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   G+ PDII+NPH  PSRMT+  LIE L  K   +EG   + T F    +  
Sbjct: 603  RQEDMPFTREGVTPDIIINPHAIPSRMTIAHLIECLLSKVSTLEGMEGDATPFTDVTVDS 662

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLK 1344
            V + L +HGY  +G +I Y+G TG+ L A ++ GP YYQ+L+
Sbjct: 663  VSDLLRKHGYQSRGFEIMYNGHTGKKLRAQVFFGPTYYQRLR 704



 Score =  111 bits (278), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 57/173 (32%), Positives = 101/173 (58%), Gaps = 7/173 (4%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMER-QGVTQVLSRLSYISGLGMMTRINS 243
            F++   ++  T++N L  ++ TGNW  ++  M    GV+QVL+R ++ S L  + R N+
Sbjct: 40  HFNLAVGIKPGTLSNGLKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNT 99

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNL+LM +++  +  + ++  M N
Sbjct: 100 PIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSPAEPLIDFMIN 159

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQT 356
            G+E I  +  E L  P    +FVNG   G+    K +    +++ F+  R++
Sbjct: 160 RGMEVIEEY--EPLRYPHATKIFVNGTWVGVHQDPKHL----VDQVFDTRRKS 206



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 347 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGFFLTN 392

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 393 YSRRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 432


>gi|89274902|gb|ABD65892.1| RNA polymerase II second largest subunit, partial [Sparassis crispa]
          Length = 900

 Score =  213 bits (543), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 105/263 (39%), Positives = 163/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 530  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLRF 589

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 590  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSMYYRSYMDLEKKSGVQQLEEF 649

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS-AISMATPEY-- 1090
              P  +   R     +  L+ DG++APG  +    +++ K+ P    S  +   T  +  
Sbjct: 650  EKPTRDTTLRMKHGTYDKLEDDGLIAPGTGVNGEDIIIGKTAPIPPDSEELGQRTRAHTK 709

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++N++    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 710  RDVSTPLKSTESGIIDQVLITTNADGQKFVKIRVRSTRVPQIGDKFASRHGQKGTIGITY 769

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 770  RQEDMPFTAEGITPDIIINPHAI 792



 Score =  191 bits (486), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 89/188 (47%), Positives = 123/188 (65%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++N++    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 710  RDVSTPLKSTESGIIDQVLITTNADGQKFVKIRVRSTRVPQIGDKFASRHGQKGTIGITY 769

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 770  RQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTELTVES 829

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
            V + L + GY  +G ++ Y G TG  L+A +Y GP YYQ+LKHMV DKIH+R+RGP  +L
Sbjct: 830  VSQVLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMVDDKIHSRARGPVQIL 889

Query: 1363 TRQPTGRR 1370
            TRQP   R
Sbjct: 890  TRQPVEGR 897



 Score =  108 bits (270), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 93/151 (61%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKM-ERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++ +TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 220 EFNLNLAVKSNTITNGLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNT 279

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNL+LM  I+  +    +++ +  
Sbjct: 280 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMACISVGSLSAPVIEFLEE 339

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E  ++      ++P    VFVNG+  G+
Sbjct: 340 WGLE--SLEENAHSATPCTK-VFVNGVWMGV 367



 Score = 88.6 bits (218), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/168 (35%), Positives = 80/168 (47%), Gaps = 44/168 (26%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVS----------ESGIRP-------------- 723
           G+K +D+ +  G IE LD  E     I ++           SG+ P              
Sbjct: 447 GYK-WDNLIKSGVIELLDAEEEETVMICMTPEDLDNSRLQSSGVDPHANDEDFDPAARLK 505

Query: 724 GVT-----THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQ 778
            VT     TH EI P  +LGVCA I              +P+P HNQ+PRNTYQ AMGKQ
Sbjct: 506 AVTNAHTWTHCEIHPSMILGVCASI--------------IPFPDHNQSPRNTYQSAMGKQ 551

Query: 779 AMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
           AMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 552 AMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNAI 599



 Score = 58.2 bits (139), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 58/114 (50%), Gaps = 14/114 (12%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A++ L    + HI +       KA +   MI R++LA  +   LDDRD++G KRL+LAG 
Sbjct: 131 AQEILQKEMLPHISMAEGSESKKAYFFGYMIHRLLLAALERRDLDDRDHFGKKRLDLAGP 190

Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYGN 555
           LL+ +F  +F++   ++           KE NL+  V    + +G  + L  GN
Sbjct: 191 LLANLFRMLFRKLTKDVYRYLQKCVESHKEFNLNLAVKSNTITNGLKYSLATGN 244


>gi|300394702|gb|ADK11889.1| DNA-directed RNA polymerase II subunit two, partial [Coniophora sp.
            Braz-6]
          Length = 693

 Score =  213 bits (543), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 104/263 (39%), Positives = 160/263 (60%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 351  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKF 410

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
              LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 411  RGLPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEF 470

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  ++ DG++APG  +    +++ K+ P    S        T   
Sbjct: 471  EKPTRDTTLRMKHGTYDKIEDDGLIAPGTGVSGEDIIIGKTAPIPPDSEELGQRTRTHTR 530

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 531  RDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITY 590

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PD+++NPH +
Sbjct: 591  RQEDMPFTAEGIVPDLVINPHAI 613



 Score =  156 bits (394), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 73/163 (44%), Positives = 102/163 (62%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 531  RDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITY 590

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PD+++NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 591  RQEDMPFTAEGIVPDLVINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVES 650

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKH 1345
            V   L + GY  +G ++ Y G TG  L A +Y GP YYQ+LKH
Sbjct: 651  VSTFLRQKGYQSRGLEVMYHGHTGRKLRAQVYLGPTYYQRLKH 693



 Score =  112 bits (279), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 58/151 (38%), Positives = 91/151 (60%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKM-ERQGVTQVLSRLSYISGLGMMTRINS 243
           +F+I   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 43  EFNISLAVKHQTITNGLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNT 102

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM+ I+  +    +++ +  
Sbjct: 103 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSFSAPVIEFLEE 162

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E +        SS     VFVNG+  G+
Sbjct: 163 WGLESL---EENAHSSTVCTKVFVNGVWMGV 190



 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 84/165 (50%), Gaps = 22/165 (13%)

Query: 718 ESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGK 777
           +SGI     TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGK
Sbjct: 326 KSGINAHTWTHCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGK 371

Query: 778 QAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQISPGGAEELTAR 837
           QAMG    N   R+DT+   L Y Q+P+  ++++    F  LPAG+  I    A    + 
Sbjct: 372 QAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRGLPAGQNAIV---AILCYSG 428

Query: 838 ESCHEVLKIISFSISVAVFDSVWLG-----DVKQGVHQLSEEKEP 877
            +  + + +   SI   +F S++       + K G+ QL E ++P
Sbjct: 429 YNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEFEKP 473


>gi|68300814|gb|AAY89348.1| RNA polymerase II second largest subunit [Antirrhinum majus]
          Length = 1200

 Score =  213 bits (543), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 111/270 (41%), Positives = 165/270 (61%), Gaps = 19/270 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 726  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 785

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L +R+ +           ++ 
Sbjct: 786  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR---------DEEKK 836

Query: 1034 LGPLLEADTRKPV------YRHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            +G L++ D  +P        RH +   LD DG+  PG +     V++ K+ P     A  
Sbjct: 837  MGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRCSGEDVIIGKTTPISPDDAQG 896

Query: 1085 MATPEYK-EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1143
             A    K +   S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQK
Sbjct: 897  QAARYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQK 956

Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G +G+   QEDMP+   GI PDII+NPH +
Sbjct: 957  GTVGMTYTQEDMPWTVEGISPDIIVNPHAI 986



 Score =  179 bits (455), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 85/184 (46%), Positives = 119/184 (64%)

Query: 1187 VSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQED 1246
             S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   QED
Sbjct: 908  TSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 967

Query: 1247 MPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEE 1306
            MP+   GI PDII+NPH  PSRMT+G+LIE + GK     G   + T F    + ++ + 
Sbjct: 968  MPWTVEGISPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 1027

Query: 1307 LIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQP 1366
            L + GY  +G +  Y+G TG  L + I+ GP YYQ+LKHMV DKIH+R RGP  +LTRQP
Sbjct: 1028 LHKCGYQMRGFETMYNGHTGRRLSSMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP 1087

Query: 1367 TGRR 1370
               R
Sbjct: 1088 AEGR 1091



 Score =  120 bits (301), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 63/146 (43%), Positives = 89/146 (60%), Gaps = 8/146 (5%)

Query: 192 MRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKV 251
           ++  TIT+ L  ++ TGNW        R GV+QVL+RL+Y S L  + R+BS   +  K+
Sbjct: 448 IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLBSPIGREGKL 507

Query: 252 SGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAM 311
           + PR L  SQWGM+CP++TPEG+ACGLVKNLALM +IT  +    +L+ +   G E    
Sbjct: 508 AKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTE---- 563

Query: 312 FNGEELSS---PGVYLVFVNGILAGI 334
            N EE+S    P    +FVNG+  GI
Sbjct: 564 -NFEEISPAVIPQATKIFVNGLWVGI 588



 Score = 99.4 bits (246), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/141 (39%), Positives = 78/141 (55%), Gaps = 24/141 (17%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVS-----ESGIRP-----GVTTHLEIAPFTLLGVCA 741
           + + + +G IEY+D  E   + I+++      + + P        TH EI P  +LGVCA
Sbjct: 665 WHELVAKGFIEYIDTEEEETTMISMTINDLLSAKVNPTEAYSDTYTHCEIHPSLILGVCA 724

Query: 742 GIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYA 801
            I              +P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y 
Sbjct: 725 SI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYP 770

Query: 802 QRPMVESKTIRITNFHKLPAG 822
           Q+P+V ++ +   +F +LPAG
Sbjct: 771 QKPLVTTRAMEHLHFRQLPAG 791



 Score = 55.1 bits (131), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 57/121 (47%), Gaps = 14/121 (11%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           K+  +  A++ L    + H+ V       KA Y   +I R++L        DDRD+YGNK
Sbjct: 345 KEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNK 404

Query: 509 RLELAGSLLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYG 554
           RL+LAG LL  +F  +F++   ++           K+ NL   +    + SG  + L  G
Sbjct: 405 RLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFXIKAKTITSGLKYSLATG 464

Query: 555 N 555
           N
Sbjct: 465 N 465



 Score = 50.1 bits (118), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 19/85 (22%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVR------------- 387
           + KP + ES   T    P   RLR+LTYSAP+ VD+     S+RV++             
Sbjct: 103 LSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV-----SKRVIKKGHDGEEVTETQD 157

Query: 388 -SDLVIGRMPIMLQSSKCVLRNKTE 411
            + + IG++PIML+SS C L   +E
Sbjct: 158 FTKVFIGKVPIMLRSSYCTLYQNSE 182



 Score = 42.0 bits (97), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 29/41 (70%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANI 154
           D W ++ ++ +EKGLV+  +DSFD FI   +++++  +A+I
Sbjct: 33  DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADI 73


>gi|452843951|gb|EME45885.1| hypothetical protein DOTSEDRAFT_42537 [Dothistroma septosporum NZE10]
          Length = 1260

 Score =  213 bits (543), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 107/283 (37%), Positives = 166/283 (58%), Gaps = 3/283 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 789  IIPFPDHNQSPRNTYQSAMGKQAMGVTLTNYNTRMDTMANVLYYPQKPLATTRSMEYLKF 848

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L +R+     K+      +  
Sbjct: 849  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYTDQEKRVGMSVVEAF 908

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPT-ISVSAISMATPEY-- 1090
              P+     R     +  LD+DGI+ PG ++    +L+ K+ P       +   T  +  
Sbjct: 909  EKPVRADTMRMKKGTYDKLDEDGIITPGSRVSGEDILIGKTAPMPPDAEELGQRTTAHTK 968

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    + +    +++VLV++N+E    +K+  R T+ P+IGDKF+SRHGQKG +G+  
Sbjct: 969  RDVSTPLRSTENGVIDQVLVTTNTEGLRFVKVRTRVTKVPQIGDKFASRHGQKGTVGITY 1028

Query: 1151 EQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSV 1193
             QEDMPF   G+ PDII+NPH +     I    E  +S  G++
Sbjct: 1029 RQEDMPFTADGLTPDIIINPHAIPSRMTIAHLIECLLSKVGAL 1071



 Score =  190 bits (483), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 87/190 (45%), Positives = 122/190 (64%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    + +    +++VLV++N+E    +K+  R T+ P+IGDKF+SRHGQKG +G+  
Sbjct: 969  RDVSTPLRSTENGVIDQVLVTTNTEGLRFVKVRTRVTKVPQIGDKFASRHGQKGTVGITY 1028

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   G+ PDII+NPH  PSRMT+  LIE L  K G + G   + T F    +  
Sbjct: 1029 RQEDMPFTADGLTPDIIINPHAIPSRMTIAHLIECLLSKVGALNGQEGDATPFTDVTVTS 1088

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
            V E L  HG+  +G ++ Y+G TG  L A ++ GP YYQ+L+HMV DKIHAR+RGP  +L
Sbjct: 1089 VSEILASHGFQQRGFEVMYNGHTGRKLNAQVFLGPTYYQRLRHMVDDKIHARARGPLQIL 1148

Query: 1363 TRQPTGRRWK 1372
            TRQP   R +
Sbjct: 1149 TRQPVEGRAR 1158



 Score =  105 bits (262), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 52/158 (32%), Positives = 93/158 (58%), Gaps = 6/158 (3%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F+I   ++ + IT+ L   + TGNW   ++    + GV+QVL+R +Y S L  + R N+
Sbjct: 463 EFNIALAIKSNIITSGLRYCLATGNWGDQKKAASAKAGVSQVLNRYTYASTLSHLRRTNT 522

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNL+LM ++T     + ++  M  
Sbjct: 523 PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVTVGTPAEPLIDFMRQ 582

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGITCHHKEV 341
            G++ +  ++   + +P    +F+NG   G+   HK+ 
Sbjct: 583 RGMDLLEEYD--PVLNPKATKIFLNGTWIGV---HKDA 615



 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 773 THCEIHPAMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVTLTN 818

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 819 YNTRMDTMANVLYYPQKPLATTRSMEYLKFRELPAGQNAI 858



 Score = 49.3 bits (116), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 48/93 (51%)

Query: 441 RQKRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLD 500
           R+ + Q  K+  +  ARD +    + HI         KA +L  M+ R++         D
Sbjct: 359 RRGQQQGTKERRIRYARDIMQKEFLPHISQEEGSETKKAFFLGYMVNRLLQCALGRTEED 418

Query: 501 DRDYYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
           DRD++G KRL+LAG L++ +F   F++   ++K
Sbjct: 419 DRDHFGKKRLDLAGPLMAQVFRLKFQQLVKDMK 451


>gi|47156743|gb|AAT12268.1| RNA polymerase II second largest subunit [Diapensia lapponica]
          Length = 530

 Score =  213 bits (543), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 109/271 (40%), Positives = 166/271 (61%), Gaps = 20/271 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 197  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 256

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L +R+ +           ++ 
Sbjct: 257  RELPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR---------DEEKK 307

Query: 1034 LGPLLEADTRKPV------YRHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            +G L++ D  +P        RH +   LD DG+  PG ++    V++ K+ P     +  
Sbjct: 308  MGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDDSQG 367

Query: 1085 MATPEY--KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQ 1142
                 Y  ++   S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQ
Sbjct: 368  GPGGRYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 427

Query: 1143 KGVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            KG +G+   QEDMP+   GI PDII+NPH +
Sbjct: 428  KGTVGMTYTQEDMPWTMEGITPDIIVNPHAI 458



 Score =  133 bits (334), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 64/151 (42%), Positives = 94/151 (62%)

Query: 1187 VSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQED 1246
             S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   QED
Sbjct: 380  TSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 439

Query: 1247 MPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEE 1306
            MP+   GI PDII+NPH  PSRMT+G+LIE + GK     G   + T F    + ++ + 
Sbjct: 440  MPWTMEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTEVTVDNISKA 499

Query: 1307 LIRHGYNYQGKDIFYSGITGEALEAYIYSGP 1337
            L + GY  +G +  Y+G TG  L A I+ GP
Sbjct: 500  LHKCGYQMRGFETMYNGHTGRRLSAMIFLGP 530



 Score =  101 bits (251), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 56/141 (39%), Positives = 79/141 (56%), Gaps = 24/141 (17%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRP----------GVTTHLEIAPFTLLGVCA 741
           + D + +G IEY+D  E   + I+++ + +            G+ TH EI P  +LGVCA
Sbjct: 136 WHDLVAKGFIEYIDTEEEETTLISMTINELVSNREHPEDSNFGIYTHCEIHPSLILGVCA 195

Query: 742 GIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYA 801
            I              +P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y 
Sbjct: 196 SI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYP 241

Query: 802 QRPMVESKTIRITNFHKLPAG 822
           Q+P+V ++ +   +F +LPAG
Sbjct: 242 QKPLVTTRAMEHLHFRELPAG 262



 Score = 43.9 bits (102), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 36/64 (56%), Gaps = 8/64 (12%)

Query: 274 EACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMFNGEELSS---PGVYLVFVNGI 330
           +ACGLVKNLALM ++T  +    +L+ +   G E     N EE+S    P    +FVNG 
Sbjct: 1   QACGLVKNLALMVYVTVGSAAYPILEFLEEWGTE-----NFEEISPAVIPQATKIFVNGC 55

Query: 331 LAGI 334
            AGI
Sbjct: 56  WAGI 59


>gi|383320560|ref|YP_005381401.1| DNA-directed RNA polymerase, subunit B'' [Methanocella conradii
            HZ254]
 gi|379321930|gb|AFD00883.1| DNA-directed RNA polymerase, subunit B'' [Methanocella conradii
            HZ254]
          Length = 604

 Score =  213 bits (543), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 109/267 (40%), Positives = 159/267 (59%), Gaps = 4/267 (1%)

Query: 911  SPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRI 970
            + G++PYP HN +PR T    M KQ++G    NQ+ R DT  + L Y Q  +V ++T R 
Sbjct: 134  AAGMIPYPEHNASPRVTMGAGMIKQSLGVSTANQKLRPDTRGHFLHYPQEAIVTTQTARS 193

Query: 971  TNFHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTH 1030
             NF K PAGQN  +AV+SY GY+IEDAL+ NK S+DRG GR   +R ++   ++YP    
Sbjct: 194  INFEKRPAGQNFVVAVLSYEGYNIEDALVFNKGSIDRGLGRSHFFRTTEGEERRYPGGQE 253

Query: 1031 DRILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISV---SAISMAT 1087
            D    P  E    +    +  LD+DG+V P  ++    VL+ K+ P   +   + +   T
Sbjct: 254  DTFEVPDAEVRGAREAEYYSMLDEDGLVNPETEVGPNDVLIGKTSPPRFLEEPTDLGGIT 313

Query: 1088 P-EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVI 1146
            P + +E  V+ + +    ++ V+++     + L K+  R  R PE+GDKF+SRHGQKGVI
Sbjct: 314  PLKRRETSVTMRSNEKGIVDTVILTETQNGSRLAKVRTRDLRIPELGDKFASRHGQKGVI 373

Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGL 1173
            GLI  QEDMPF ESG+ PD+I+NPH +
Sbjct: 374  GLIAPQEDMPFTESGMVPDLIINPHAI 400



 Score =  197 bits (501), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 95/209 (45%), Positives = 138/209 (66%), Gaps = 1/209 (0%)

Query: 1164 PDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPE 1223
            P  +  P  L G   + + +E  V+ + +    ++ V+++     + L K+  R  R PE
Sbjct: 300  PRFLEEPTDLGGITPL-KRRETSVTMRSNEKGIVDTVILTETQNGSRLAKVRTRDLRIPE 358

Query: 1224 IGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAG 1283
            +GDKF+SRHGQKGVIGLI  QEDMPF ESG+ PD+I+NPH  PSRMT+G ++E + GK G
Sbjct: 359  LGDKFASRHGQKGVIGLIAPQEDMPFTESGMVPDLIINPHAIPSRMTIGHVLETIGGKVG 418

Query: 1284 LMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKL 1343
             + G + +GTAF      +++ EL + G+++ GK++FY GITG+ ++A ++ G + YQKL
Sbjct: 419  SLAGRFVDGTAFNNETEDELRAELKKFGFSHTGKEVFYDGITGQRIKADVFVGVILYQKL 478

Query: 1344 KHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
             HMV  K+HARSRGP  VLTRQPT  R +
Sbjct: 479  YHMVSSKMHARSRGPVQVLTRQPTEGRAR 507



 Score = 92.8 bits (229), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/136 (38%), Positives = 73/136 (53%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G   FDD +  G IEY+D  E  +++IA+ ES +     THLE+ P  +LG+ AG     
Sbjct: 83  GEATFDDLVKRGLIEYIDAEEEENTYIAIDESQLTKD-HTHLELEPSLILGIAAG----- 136

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    ++PYP HN +PR T    M KQ++G    NQ+ R DT  + L Y Q  +V 
Sbjct: 137 ---------MIPYPEHNASPRVTMGAGMIKQSLGVSTANQKLRPDTRGHFLHYPQEAIVT 187

Query: 808 SKTIRITNFHKLPAGK 823
           ++T R  NF K PAG+
Sbjct: 188 TQTARSINFEKRPAGQ 203


>gi|56694332|gb|AAW22906.1| RNA polymerase II second largest subunit [Agathis australis]
          Length = 514

 Score =  213 bits (543), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 107/261 (40%), Positives = 160/261 (61%), Gaps = 1/261 (0%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q P+V ++ +   +F
Sbjct: 176  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQXPLVTTRAMEHLHF 235

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L +R+ +   K+      +  
Sbjct: 236  RQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKRMGTLVKEEF 295

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMP-TISVSAISMATPEYKE 1092
              P  E  T      +  LD+DG+  PG ++    V++ K+ P T       ++    ++
Sbjct: 296  GRPNRENTTGMRHGSYDKLDEDGLAPPGTRVSGEDVIIGKTTPITQDEQGGQLSRFSRRD 355

Query: 1093 VPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQ 1152
               S + S    +++VL+++N +    +K+ +R  R P+IGDKFSSRHGQKG +G+   Q
Sbjct: 356  QSTSLRHSESGMVDQVLLTTNQDGLRFVKIRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQ 415

Query: 1153 EDMPFNESGICPDIIMNPHGL 1173
            EDMP+   GI PDII+NPH +
Sbjct: 416  EDMPWTVEGITPDIIVNPHAI 436



 Score =  143 bits (361), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 68/161 (42%), Positives = 99/161 (61%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++   S + S    +++VL+++N +    +K+ +R  R P+IGDKFSSRHGQKG +G+  
Sbjct: 354  RDQSTSLRHSESGMVDQVLLTTNQDGLRFVKIRMRSVRIPQIGDKFSSRHGQKGTVGMTY 413

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMP+   GI PDII+NPH  PSRMT+G+LIE + GK     G   + T F    +  
Sbjct: 414  TQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDS 473

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKL 1343
            + + L + GY  +G +  Y+G TG  L A I+ GP YYQ+L
Sbjct: 474  ISKALHKCGYQMRGFETMYNGHTGRKLSAMIFLGPTYYQRL 514



 Score = 99.0 bits (245), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/169 (37%), Positives = 86/169 (50%), Gaps = 37/169 (21%)

Query: 677 RPTFLNMHQFLGFKRFD-------------DFLYEGKIEYLDVNEGNDSHIAVS-----E 718
           RP F+  +Q L  K+ D             + + +G IEY+D  E   + I+++      
Sbjct: 87  RPLFVVENQRLKIKKKDINELRQNPEEGWHELVNKGFIEYVDTEEEETTMISMTINDLVN 146

Query: 719 SGIRPG-----VTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQC 773
           + I P        TH EI P  +LGVCA I              +P+P HNQ+PRNTYQ 
Sbjct: 147 ARINPEDAYSHTYTHCEIHPSLILGVCASI--------------IPFPDHNQSPRNTYQS 192

Query: 774 AMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAG 822
           AMGKQAMG    N Q R+DTL Y L Y Q P+V ++ +   +F +LPAG
Sbjct: 193 AMGKQAMGIYVTNYQLRMDTLAYVLYYPQXPLVTTRAMEHLHFRQLPAG 241


>gi|110169452|gb|ABG53982.1| RNA polymerase II second largest subunit, partial [Entyloma
            calendulae]
          Length = 693

 Score =  213 bits (543), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 105/263 (39%), Positives = 159/263 (60%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DT+   L Y Q+P+  ++ ++   F
Sbjct: 349  IIPFPDHNQSPRNTYQSAMGKQAMGVYLTNYQMRMDTMANILYYPQKPLGTTRAMQHLKF 408

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R L YR    + K+      +  
Sbjct: 409  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSLYYRTYTDLEKKSGMVEMEVF 468

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  E   R     +  LD DG+ APG ++    +++ K++P    S    +       
Sbjct: 469  EKPSRETTIRLKHGTYDKLDADGLCAPGTRVSGEDIIIGKTVPLPGDSEELGLRSKLHTK 528

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++  +  K +    +++VLV++N +    +K+ +R TR P+ GDKF+SRHGQKG IG+  
Sbjct: 529  RDASMPLKSTESGIVDQVLVTTNGDGVKFVKVRVRSTRVPQTGDKFASRHGQKGTIGITY 588

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   G+ PDII+NPH +
Sbjct: 589  RQEDMPFTVEGVTPDIIINPHAI 611



 Score =  155 bits (393), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 73/165 (44%), Positives = 102/165 (61%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++  +  K +    +++VLV++N +    +K+ +R TR P+ GDKF+SRHGQKG IG+  
Sbjct: 529  RDASMPLKSTESGIVDQVLVTTNGDGVKFVKVRVRSTRVPQTGDKFASRHGQKGTIGITY 588

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   G+ PDII+NPH  PSRMT+G L+E L  K   + G   + T F    +  
Sbjct: 589  RQEDMPFTVEGVTPDIIINPHAIPSRMTIGHLVECLLSKVATLSGQEGDATPFTSLTVEA 648

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMV 1347
            V   L   GY  +G +I Y+G TG  L+A +Y GP YYQ+LKHMV
Sbjct: 649  VSNVLKGFGYQSRGLEIMYNGHTGRKLQAQVYLGPTYYQRLKHMV 693



 Score =  112 bits (280), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 55/150 (36%), Positives = 91/150 (60%), Gaps = 4/150 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F I   ++  TITN L  ++ TGNW   ++F   + GV+QVL+R ++ S L  + R N+
Sbjct: 41  EFFINTAVKSATITNGLKYSLATGNWGDQKKFMQAKAGVSQVLNRYTFASTLSHLRRCNT 100

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNL+LM+ I+  +  + +++ +  
Sbjct: 101 PIGRDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSLISVGSQSQPIIEFLEE 160

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAG 333
            G++ +     E+  S     VFVNG+  G
Sbjct: 161 FGLDQLTDMRREDARSTK---VFVNGVWLG 187



 Score = 88.6 bits (218), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/100 (44%), Positives = 59/100 (59%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 333 THCEIHPAMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVYLTN 378

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
            Q R+DT+   L Y Q+P+  ++ ++   F +LPAG+  I
Sbjct: 379 YQMRMDTMANILYYPQKPLGTTRAMQHLKFRELPAGQNAI 418


>gi|86559355|gb|ABD04085.1| RNA polymerase II second largest subunit, partial [Clavulina sp.
            MB03-034]
          Length = 657

 Score =  213 bits (543), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 103/263 (39%), Positives = 160/263 (60%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DT+   L Y Q+P+  ++++    F
Sbjct: 330  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFQVRMDTMANILYYPQKPLATTRSMTYLRF 389

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNAT+A++ YSGY+ ED++IMN++S+DRG  R + YR+     K+      +  
Sbjct: 390  RELPAGQNATVAILCYSGYNQEDSVIMNQSSIDRGLFRSMYYRSYADAEKKVGMLPLEEF 449

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  LD DG++APG  +    +++ K+ P    S      + T   
Sbjct: 450  ERPTRDNTLRLKHGSYEKLDDDGLIAPGTGVVGEDIIIGKTAPLPPDSEELGQRLRTHTR 509

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++V+V++N +    +K+ +R TR P++GDKF+SRHGQKG +G+  
Sbjct: 510  RDVSTPLKSTENGIVDQVVVTTNGDGLKFVKIRIRSTRIPQVGDKFASRHGQKGTVGITY 569

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
              EDMPF   GI PD+I+NPH +
Sbjct: 570  RHEDMPFTAEGITPDLIINPHAI 592



 Score =  128 bits (321), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 60/153 (39%), Positives = 92/153 (60%)

Query: 1178 RITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV 1237
            R    ++V    K +    +++V+V++N +    +K+ +R TR P++GDKF+SRHGQKG 
Sbjct: 505  RTHTRRDVSTPLKSTENGIVDQVVVTTNGDGLKFVKIRIRSTRIPQVGDKFASRHGQKGT 564

Query: 1238 IGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGG 1297
            +G+    EDMPF   GI PD+I+NPH  PSRMT+G LIE L  K   + G   + T F  
Sbjct: 565  VGITYRHEDMPFTAEGITPDLIINPHAIPSRMTIGHLIECLLSKLATLTGREGDATPFTE 624

Query: 1298 TKLVDVQEELIRHGYNYQGKDIFYSGITGEALE 1330
              +  V + L ++GY  +G ++ Y G TG+ L+
Sbjct: 625  LTVESVSQLLRQYGYQSRGLEVMYHGHTGKKLQ 657



 Score =  108 bits (270), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 56/152 (36%), Positives = 90/152 (59%), Gaps = 6/152 (3%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F I   ++  TI+N L  ++ TGNW   ++F   + GV+QVL+R ++ S L  + R N+
Sbjct: 25  EFSIGAAVKPTTISNGLKYSLATGNWGDQKKFMSAKAGVSQVLNRYTFASTLSHLRRCNT 84

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNL+LM  I+  +    +++ +  
Sbjct: 85  PLGRDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMACISVGSISAPVIEFLQE 144

Query: 304 IGIEHIAMFNGEELSSPGVYL-VFVNGILAGI 334
            G+E +     E  S  G    VFVNG+  G+
Sbjct: 145 WGLESLE----ESASDHGTATKVFVNGVWIGV 172



 Score = 88.2 bits (217), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/106 (41%), Positives = 62/106 (58%), Gaps = 14/106 (13%)

Query: 718 ESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGK 777
           +S ++    TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGK
Sbjct: 305 QSTMQSHAWTHCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGK 350

Query: 778 QAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
           QAMG    N Q R+DT+   L Y Q+P+  ++++    F +LPAG+
Sbjct: 351 QAMGIYLTNFQVRMDTMANILYYPQKPLATTRSMTYLRFRELPAGQ 396


>gi|300394692|gb|ADK11884.1| DNA-directed RNA polymerase II subunit two, partial [Coniophora arida
            var. suffocata]
          Length = 686

 Score =  213 bits (543), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 106/266 (39%), Positives = 160/266 (60%), Gaps = 9/266 (3%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 354  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKF 413

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 414  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEF 473

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKEV 1093
              P  +   R     +  ++ DG++APG  +    +++ K+ P   +   S    +    
Sbjct: 474  EKPTRDTTLRMKHGTYDKIEDDGLIAPGTGVSGEDIIIGKTAP---IPPDSEELGQRTRT 530

Query: 1094 PVSYKGSVP------SYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
                 GS P        +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG
Sbjct: 531  HTRRDGSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIG 590

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            +   QEDMPF   GI PDII+NPH +
Sbjct: 591  ITYRQEDMPFTAEGIVPDIIINPHAI 616



 Score =  138 bits (348), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 65/138 (47%), Positives = 89/138 (64%)

Query: 1197 LEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICP 1256
            +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+   QEDMPF   GI P
Sbjct: 548  VDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVP 607

Query: 1257 DIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQG 1316
            DII+NPH  PSRMT+G L+E L  K   + GN  + T F    +  V   L + GY  +G
Sbjct: 608  DIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKGYQSRG 667

Query: 1317 KDIFYSGITGEALEAYIY 1334
             ++ Y G TG  L+A +Y
Sbjct: 668  LEVMYHGHTGRKLQAQVY 685



 Score =  111 bits (278), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 58/151 (38%), Positives = 91/151 (60%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKM-ERQGVTQVLSRLSYISGLGMMTRINS 243
           +F+I   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 46  EFNISLAVKHQTITNGLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNT 105

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM+ I+  +    +++ +  
Sbjct: 106 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSFSAPVIEFLEE 165

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E +        SS     VFVNG+  G+
Sbjct: 166 WGLESL---EENAHSSTVCTKVFVNGVWMGV 193



 Score = 89.7 bits (221), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 46/109 (42%), Positives = 62/109 (56%), Gaps = 14/109 (12%)

Query: 718 ESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGK 777
           +SGI     TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGK
Sbjct: 329 KSGINAHTWTHCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGK 374

Query: 778 QAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
           QAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 375 QAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAI 423



 Score = 42.4 bits (98), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 14/70 (20%)

Query: 500 DDRDYYGNKRLELAGSLLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVS 545
           DDRD++G KRL+LAG LL+ +F  +FK+   ++           KE N+S  V    + +
Sbjct: 1   DDRDHFGKKRLDLAGPLLANLFRMLFKKLTRDVYRYLQKCVETHKEFNISLAVKHQTITN 60

Query: 546 GWWFELKYGN 555
           G  + L  GN
Sbjct: 61  GLKYSLATGN 70


>gi|68131842|gb|AAY85199.1| RNA polymerase II second largest subunit [Cissus tuberosa]
          Length = 951

 Score =  213 bits (543), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 111/271 (40%), Positives = 167/271 (61%), Gaps = 21/271 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 613  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHF 672

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L +R+ +           ++ 
Sbjct: 673  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR---------DEEKK 723

Query: 1034 LGPLLEADTRKPV------YRHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            +G L++ D  +P        RH +   LD DG+  PG ++    V++ K+ P IS     
Sbjct: 724  MGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP-ISQDDSQ 782

Query: 1085 MATPEY--KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQ 1142
                 Y  ++   S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQ
Sbjct: 783  GQPSRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQ 842

Query: 1143 KGVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            KG +G+   QEDMP+   GI PDII+NPH +
Sbjct: 843  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAI 873



 Score =  144 bits (362), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 68/157 (43%), Positives = 99/157 (63%)

Query: 1187 VSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQED 1246
             S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   QED
Sbjct: 795  TSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 854

Query: 1247 MPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEE 1306
            MP+   GI PDII+NPH  PSRMT+G+LIE + GK     G   + T F    + ++ + 
Sbjct: 855  MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 914

Query: 1307 LIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKL 1343
            L + GY  +G +  Y+G TG  L A I+ GP YYQ+L
Sbjct: 915  LHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 951



 Score =  115 bits (289), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 62/146 (42%), Positives = 87/146 (59%), Gaps = 8/146 (5%)

Query: 192 MRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKV 251
           ++  TIT+ L  ++ TGNW        R GV+QVL+RL+Y S L  + R+NS   +  K+
Sbjct: 335 IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKL 394

Query: 252 SGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAM 311
           + PR L  S WGM+CP++TPEG+ACGLVKNLALM +IT  +    +L+ +     E  + 
Sbjct: 395 AKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFL-----EEWST 449

Query: 312 FNGEELSS---PGVYLVFVNGILAGI 334
            N EE+S    P    +FVNG   GI
Sbjct: 450 ENFEEISPAVIPQSTKIFVNGCWVGI 475



 Score = 99.4 bits (246), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/141 (39%), Positives = 77/141 (54%), Gaps = 24/141 (17%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPG----------VTTHLEIAPFTLLGVCA 741
           + D + +G IEY+D  E   + I+++ + +               TH EI P  +LGVCA
Sbjct: 552 WHDLVSKGFIEYVDTEEEETTMISMTINDLVSARLNPEEAYSETYTHCEIHPSLILGVCA 611

Query: 742 GIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYA 801
            I              +P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y 
Sbjct: 612 SI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYP 657

Query: 802 QRPMVESKTIRITNFHKLPAG 822
           Q+P+V ++ +   +F +LPAG
Sbjct: 658 QKPLVTTRAMEHLHFRQLPAG 678



 Score = 51.6 bits (122), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 14/114 (12%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A++      + H+ V       KA Y   +I +++L        DDRD+YGNKRL+LAG 
Sbjct: 239 AKEIFQKEMLPHVGVGEYCETKKAYYFGYIIHQLLLCAFGRRPEDDRDHYGNKRLDLAGP 298

Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYGN 555
           LL  +F  +F++   ++           K+ NL   +    + SG  + L  GN
Sbjct: 299 LLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGN 352


>gi|46277269|gb|AAS86825.1| RNA polymerase II second largest subunit, partial [Platanus
            orientalis]
          Length = 536

 Score =  213 bits (543), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 109/270 (40%), Positives = 166/270 (61%), Gaps = 19/270 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 198  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHF 257

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L +R+ +           ++ 
Sbjct: 258  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR---------DEEKK 308

Query: 1034 LGPLLEADTRKPV------YRHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            +G L++ D  +P        RH +   LD DG+  PG ++    V++ K+ P        
Sbjct: 309  MGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQEEPQG 368

Query: 1085 MATP-EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1143
             A+    ++   S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQK
Sbjct: 369  QASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQK 428

Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G +G+   QEDMP+   GI PDII+NPH +
Sbjct: 429  GTVGMTYTQEDMPWTVEGITPDIIVNPHAI 458



 Score =  144 bits (363), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 68/157 (43%), Positives = 99/157 (63%)

Query: 1187 VSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQED 1246
             S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   QED
Sbjct: 380  TSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 439

Query: 1247 MPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEE 1306
            MP+   GI PDII+NPH  PSRMT+G+LIE + GK     G   + T F    + ++ + 
Sbjct: 440  MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 499

Query: 1307 LIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKL 1343
            L + GY  +G +  Y+G TG  L A I+ GP YYQ+L
Sbjct: 500  LHKCGYQMRGFETMYNGHTGRKLSAMIFLGPTYYQRL 536



 Score =  100 bits (250), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 62/168 (36%), Positives = 85/168 (50%), Gaps = 36/168 (21%)

Query: 677 RPTFLNMHQFLGFKRFD------------DFLYEGKIEYLDVNEGNDSHIAVSESGIRPG 724
           RP F+   Q L  K+ D            D + +G IEY+D  E   + I+++ + +   
Sbjct: 110 RPLFIVEKQRLLIKKKDIRALQQRDGGWHDLVAKGYIEYVDTEEEETTMISMTINDLVTA 169

Query: 725 ----------VTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCA 774
                       TH EI P  +LGVCA I              +P+P HNQ+PRNTYQ A
Sbjct: 170 RLNPEEAYSETYTHCEIHPSLILGVCASI--------------IPFPDHNQSPRNTYQSA 215

Query: 775 MGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAG 822
           MGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F +LPAG
Sbjct: 216 MGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG 263



 Score = 50.4 bits (119), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 40/69 (57%), Gaps = 8/69 (11%)

Query: 269 DTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMFNGEELSS---PGVYLV 325
           +TPEG+ACGLVKNLALM +IT  +    +L+ +     E  +  N EE+S    P    +
Sbjct: 1   ETPEGQACGLVKNLALMVYITVGSAANPILEFL-----EEWSTENFEEISPAVIPQATKI 55

Query: 326 FVNGILAGI 334
           FVNG   GI
Sbjct: 56  FVNGCWVGI 64


>gi|341859116|gb|AEK97468.1| ribosomal polymerase II second largest subunit [Beauveria amorpha]
 gi|341859118|gb|AEK97469.1| ribosomal polymerase II second largest subunit [Beauveria amorpha]
 gi|341859120|gb|AEK97470.1| ribosomal polymerase II second largest subunit [Beauveria amorpha]
 gi|341859122|gb|AEK97471.1| ribosomal polymerase II second largest subunit [Beauveria amorpha]
 gi|341859124|gb|AEK97472.1| ribosomal polymerase II second largest subunit [Beauveria amorpha]
          Length = 703

 Score =  213 bits (542), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 103/264 (39%), Positives = 163/264 (61%), Gaps = 5/264 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 362  IIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSMEFLKF 421

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L +R+     K+      +  
Sbjct: 422  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYSDQEKKVGLNYTEIF 481

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT----PE 1089
              P  ++  R     +  LD+DGIVAPG ++    +++ K+ P I      + T     +
Sbjct: 482  EKPFHQSTLRMKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAP-IDPETQDLGTRTTAHQ 540

Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             +++    + +    +++V+V+ N+++   +K+ +R T+ P+IGDKF+SRHGQKG IG+ 
Sbjct: 541  RRDISTPLRSTENGIVDQVIVTVNADNVKYVKVRVRTTKIPQIGDKFASRHGQKGTIGVT 600

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
              QEDMPF   G+ PDII+NPH +
Sbjct: 601  YRQEDMPFTREGVTPDIIINPHAI 624



 Score =  150 bits (379), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 68/162 (41%), Positives = 104/162 (64%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            +++    + +    +++V+V+ N+++   +K+ +R T+ P+IGDKF+SRHGQKG IG+  
Sbjct: 542  RDISTPLRSTENGIVDQVIVTVNADNVKYVKVRVRTTKIPQIGDKFASRHGQKGTIGVTY 601

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   G+ PDII+NPH  PSRMT+  LIE L  K   +EG   + T F    +  
Sbjct: 602  RQEDMPFTREGVTPDIIINPHAIPSRMTIAHLIECLLSKVSTLEGMEGDATPFTDVTVDS 661

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLK 1344
            V + L +HGY  +G +I Y+G TG+ L A ++ GP YYQ+L+
Sbjct: 662  VSDLLRKHGYQSRGFEIMYNGHTGKKLRAQVFFGPTYYQRLR 703



 Score =  111 bits (278), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 91/151 (60%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMER-QGVTQVLSRLSYISGLGMMTRINS 243
            F++   ++  T++N L  ++ TGNW  ++  M    GV+QVL+R ++ S L  + R N+
Sbjct: 40  HFNLAVGIKPGTLSNGLKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNT 99

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNL+LM +++  +  + ++  M N
Sbjct: 100 PIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSPAEPLIDFMIN 159

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E I  +  E L  P    +FVNG   G+
Sbjct: 160 RGMEVIEEY--EPLRYPHATKIFVNGTWVGV 188



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 76/165 (46%), Gaps = 44/165 (26%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGI------RPGVT------------------- 726
           ++  +  G +EYLD  E   S I ++   +      + GV                    
Sbjct: 281 WEGLIKAGAVEYLDAEEEETSMICMTPEDLELYRLQKAGVAVDDDHSDDLNKRLKTKTNP 340

Query: 727 -----THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMG 781
                TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG
Sbjct: 341 TTHMYTHCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMG 386

Query: 782 CIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
               N   R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 387 FFLTNYSRRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 431


>gi|123979404|gb|ABM81527.1| RNA polymerase II second largest subunit [Asahinea scholanderi]
          Length = 701

 Score =  213 bits (542), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 110/267 (41%), Positives = 167/267 (62%), Gaps = 11/267 (4%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N + R+DT+   L Y Q+P+  ++++    F
Sbjct: 363  IIPFPDHNQSPRNTYQSAMGKQAMGXXFSNYEQRMDTMANILYYPQKPLATTRSMEFLKF 422

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR      K+      ++ 
Sbjct: 423  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQEKRIGMSVVEQF 482

Query: 1034 LGPLLEADTRKPVY-RHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKE 1092
              P + +DT K  +  +  LD DG+VAPG ++    +++ K+ P I+  A  +   +  +
Sbjct: 483  EKP-MRSDTLKLKHGTYDKLDDDGLVAPGVRVSGEDIIIGKTAP-IAPDAEELG--QRTK 538

Query: 1093 VPVSYKGSVP------SYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVI 1146
            + V    S P        +++VL+S+N+E    +K+ +R T+ P+IGDKF+SRHGQKG I
Sbjct: 539  LHVKRDTSTPLRSTENGIVDQVLLSTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTI 598

Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G+   QEDMPF   G+ PDII+NPH +
Sbjct: 599  GITYRQEDMPFTSEGMVPDIIINPHAI 625



 Score =  143 bits (361), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 80/228 (35%), Positives = 121/228 (53%), Gaps = 13/228 (5%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESG-ICPDIIMNPHGL 1173
            ++ Q  +P   D    +HG        G++  G+ V  ED+   ++  I PD       L
Sbjct: 478  VVEQFEKPMRSDTLKLKHGTYDKLDDDGLVAPGVRVSGEDIIIGKTAPIAPDA----EEL 533

Query: 1174 KGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
                ++   ++     + +    +++VL+S+N+E    +K+ +R T+ P+IGDKF+SRHG
Sbjct: 534  GQRTKLHVKRDTSTPLRSTENGIVDQVLLSTNAEGLRFVKVRMRTTKIPQIGDKFASRHG 593

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGT 1293
            QKG IG+   QEDMPF   G+ PDII+NPH  PSRMT+  LIE L  K   + G   + T
Sbjct: 594  QKGTIGITYRQEDMPFTSEGMVPDIIINPHAIPSRMTIAHLIECLLSKVSSLRGFEGDAT 653

Query: 1294 AFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQ 1341
             F    +  V   L  HGY  +G ++ Y+G TG  L   ++ GP YYQ
Sbjct: 654  PFTEVTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVTQVFXGPTYYQ 701



 Score =  111 bits (278), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 91/151 (60%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++   +TN L  ++ TGNW   ++    + GV+QVL+R ++ S L  + R N+
Sbjct: 39  EFNMTLAVKSTHLTNGLRYSLATGNWGDQKKAASVKAGVSQVLNRYTFASTLSHLRRTNT 98

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT     + ++  M  
Sbjct: 99  PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIVDFMIQ 158

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
             +E +  +  E L+SP    +FVNG+  G+
Sbjct: 159 RNMEVLEEY--EPLNSPNATKIFVNGVWVGV 187



 Score = 90.5 bits (223), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 59/100 (59%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 347 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGXXFSN 392

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
            + R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 393 YEQRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 432


>gi|52699853|gb|AAU86988.1| DNA-dependent RNA polymerase II second largest subunit [Placynthium
            nigrum]
          Length = 716

 Score =  213 bits (542), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 106/264 (40%), Positives = 165/264 (62%), Gaps = 5/264 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 366  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDLRMDTMANILYYPQKPLATTRSMEFLKF 425

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR+     K+      ++ 
Sbjct: 426  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSVVEQF 485

Query: 1034 LGPLLEADTRKPVY-RHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAISMATPEY- 1090
              P + +DT K  +  +  LD DGIVAPG ++    +++ K+ P       +   T  + 
Sbjct: 486  EKP-MRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKLHV 544

Query: 1091 -KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             ++V    + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHGQKG IG+ 
Sbjct: 545  KRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGIT 604

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
              QEDMPF   G+ PD+I+NPH +
Sbjct: 605  YRQEDMPFTSEGVVPDLIINPHAI 628



 Score =  157 bits (396), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 86/240 (35%), Positives = 131/240 (54%), Gaps = 13/240 (5%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESG-ICPDIIMNPHGL 1173
            ++ Q  +P   D    +HG        G++  G+ V  ED+   ++  I PD       L
Sbjct: 481  VVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPD----AEEL 536

Query: 1174 KGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
                ++   ++V    + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHG
Sbjct: 537  GQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHG 596

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGT 1293
            QKG IG+   QEDMPF   G+ PD+I+NPH  PSRMT+  LIE    K   + G   + T
Sbjct: 597  QKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDAT 656

Query: 1294 AFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHA 1353
             F    +  V   L  HGY  +G ++ Y+G TG  L A ++ GP YYQ+L+HMV  KI A
Sbjct: 657  PFTEVTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDXKIXA 716



 Score =  115 bits (289), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 91/151 (60%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  T+TN L  ++ TGNW   ++    + GV+QVL+R ++ S L  + R N+
Sbjct: 42  EFNLTLGVKSTTLTNGLKYSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNT 101

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT     + ++  M  
Sbjct: 102 PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQ 161

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
             +E +  +  E L SP    VFVNG+  G+
Sbjct: 162 RNMEVLEEY--EPLRSPNATKVFVNGVWVGV 190



 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 350 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 395

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 396 YDLRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 435


>gi|410610277|gb|AFV74907.1| RNA polymerase II second largest subunit, partial [Olax imbricata]
          Length = 568

 Score =  213 bits (542), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 111/270 (41%), Positives = 166/270 (61%), Gaps = 19/270 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 196  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 255

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L +R+ +           ++ 
Sbjct: 256  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR---------DEEKK 306

Query: 1034 LGPLLEADTRKPV------YRHRA---LDQDGIVAPGEQICERQVLVNKSMPTI-SVSAI 1083
            +G L++ D  +P        RH +   LD DG+  PG ++    V++ K+ P     S  
Sbjct: 307  MGTLVKEDFGRPNRTDTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPMAQDESQG 366

Query: 1084 SMATPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1143
              A    ++   S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQK
Sbjct: 367  QTARYSRRDHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQK 426

Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G IG+   QEDMP+   GI PDII+NPH +
Sbjct: 427  GTIGMTYTQEDMPWTIEGITPDIIVNPHAI 456



 Score =  180 bits (456), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 87/184 (47%), Positives = 119/184 (64%)

Query: 1187 VSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQED 1246
             S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG IG+   QED
Sbjct: 378  TSLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTIGMTYTQED 437

Query: 1247 MPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEE 1306
            MP+   GI PDII+NPH  PSRMT+G+LIE + GK     G   + T F    + ++ + 
Sbjct: 438  MPWTIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 497

Query: 1307 LIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQP 1366
            L + GY  +G +  Y+G TG  L A I+ GP YYQ+LKHMV DKIH+R RGP  +LTRQP
Sbjct: 498  LHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP 557

Query: 1367 TGRR 1370
               R
Sbjct: 558  AEGR 561



 Score = 99.8 bits (247), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 57/141 (40%), Positives = 78/141 (55%), Gaps = 24/141 (17%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVS-----ESGIRPG-----VTTHLEIAPFTLLGVCA 741
           + D + +G IEY+D  E   + I+++      + I P        TH EI P  +LGVCA
Sbjct: 135 WHDLVAKGFIEYIDTEEEETTMISMTINDLVTARINPEEAYTETYTHCEIHPSLILGVCA 194

Query: 742 GIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYA 801
            I              +P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y 
Sbjct: 195 SI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYP 240

Query: 802 QRPMVESKTIRITNFHKLPAG 822
           Q+P+V ++ +   +F +LPAG
Sbjct: 241 QKPLVTTRAMEHLHFRQLPAG 261



 Score = 42.0 bits (97), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 34/63 (53%), Gaps = 8/63 (12%)

Query: 275 ACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMFNGEELSS---PGVYLVFVNGIL 331
           ACGLVKNLALM +IT  +    +L+ +   G E     N EE+S    P    +FVNG  
Sbjct: 1   ACGLVKNLALMVYITVGSAAYPILEFLEKWGTE-----NFEEISPAVIPQATKIFVNGCW 55

Query: 332 AGI 334
            GI
Sbjct: 56  VGI 58


>gi|341859152|gb|AEK97486.1| ribosomal polymerase II second largest subunit [Beauveria vermiconia]
          Length = 703

 Score =  213 bits (542), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 103/264 (39%), Positives = 163/264 (61%), Gaps = 5/264 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 362  IIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSMEFLKF 421

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L +R+     K+      +  
Sbjct: 422  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYSDQEKKVGLNYTEIF 481

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT----PE 1089
              P  ++  R     +  LD+DGIVAPG ++    +++ K+ P I      + T     +
Sbjct: 482  EKPFHQSTLRMKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAP-IDPETQDLGTRTTAHQ 540

Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             +++    + +    +++V+V+ N+++   +K+ +R T+ P+IGDKF+SRHGQKG IG+ 
Sbjct: 541  RRDISTPLRSTENGIVDQVIVTVNADNVKYVKVRVRTTKIPQIGDKFASRHGQKGTIGVT 600

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
              QEDMPF   G+ PDII+NPH +
Sbjct: 601  YRQEDMPFTREGVTPDIIINPHAI 624



 Score =  150 bits (379), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 68/162 (41%), Positives = 104/162 (64%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            +++    + +    +++V+V+ N+++   +K+ +R T+ P+IGDKF+SRHGQKG IG+  
Sbjct: 542  RDISTPLRSTENGIVDQVIVTVNADNVKYVKVRVRTTKIPQIGDKFASRHGQKGTIGVTY 601

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   G+ PDII+NPH  PSRMT+  LIE L  K   +EG   + T F    +  
Sbjct: 602  RQEDMPFTREGVTPDIIINPHAIPSRMTIAHLIECLLSKVSTLEGMEGDATPFTDVTVDS 661

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLK 1344
            V + L +HGY  +G +I Y+G TG+ L A ++ GP YYQ+L+
Sbjct: 662  VSDLLRKHGYQSRGFEIMYNGHTGKKLRAQVFFGPTYYQRLR 703



 Score =  111 bits (278), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 91/151 (60%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMER-QGVTQVLSRLSYISGLGMMTRINS 243
            F++   ++  T++N L  ++ TGNW  ++  M    GV+QVL+R ++ S L  + R N+
Sbjct: 40  HFNLAVGIKPGTLSNGLKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNT 99

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNL+LM +++  +  + ++  M N
Sbjct: 100 PIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSPAEPLIDFMIN 159

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E I  +  E L  P    +FVNG   G+
Sbjct: 160 RGMEVIEEY--EPLRYPHATKIFVNGTWVGV 188



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 76/165 (46%), Gaps = 44/165 (26%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGI------RPGVT------------------- 726
           ++  +  G +EYLD  E   S I ++   +      + GV                    
Sbjct: 281 WEGLIKAGAVEYLDAEEEETSMICMTPEDLELYRLQKAGVAVDDDHGDDLNKRLKTKTNP 340

Query: 727 -----THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMG 781
                TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG
Sbjct: 341 TTHMYTHCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMG 386

Query: 782 CIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
               N   R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 387 FFLTNYSRRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 431


>gi|341859040|gb|AEK97430.1| ribosomal polymerase II second largest subunit [Beauveria
            brongniartii]
 gi|341859042|gb|AEK97431.1| ribosomal polymerase II second largest subunit [Beauveria
            brongniartii]
 gi|341859044|gb|AEK97432.1| ribosomal polymerase II second largest subunit [Beauveria
            brongniartii]
 gi|341859060|gb|AEK97440.1| ribosomal polymerase II second largest subunit [Beauveria
            brongniartii]
 gi|341859062|gb|AEK97441.1| ribosomal polymerase II second largest subunit [Beauveria
            brongniartii]
 gi|341859072|gb|AEK97446.1| ribosomal polymerase II second largest subunit [Beauveria
            brongniartii]
 gi|341859074|gb|AEK97447.1| ribosomal polymerase II second largest subunit [Beauveria
            brongniartii]
 gi|341859076|gb|AEK97448.1| ribosomal polymerase II second largest subunit [Beauveria
            brongniartii]
 gi|341859078|gb|AEK97449.1| ribosomal polymerase II second largest subunit [Beauveria asiatica]
 gi|341859080|gb|AEK97450.1| ribosomal polymerase II second largest subunit [Beauveria asiatica]
 gi|341859090|gb|AEK97455.1| ribosomal polymerase II second largest subunit [Beauveria
            pseudobassiana]
 gi|341859092|gb|AEK97456.1| ribosomal polymerase II second largest subunit [Beauveria
            pseudobassiana]
 gi|341859094|gb|AEK97457.1| ribosomal polymerase II second largest subunit [Beauveria
            pseudobassiana]
 gi|341859096|gb|AEK97458.1| ribosomal polymerase II second largest subunit [Beauveria
            pseudobassiana]
 gi|341859098|gb|AEK97459.1| ribosomal polymerase II second largest subunit [Beauveria
            pseudobassiana]
 gi|341859100|gb|AEK97460.1| ribosomal polymerase II second largest subunit [Beauveria
            pseudobassiana]
 gi|341859102|gb|AEK97461.1| ribosomal polymerase II second largest subunit [Beauveria
            pseudobassiana]
 gi|341859104|gb|AEK97462.1| ribosomal polymerase II second largest subunit [Beauveria
            pseudobassiana]
 gi|341859106|gb|AEK97463.1| ribosomal polymerase II second largest subunit [Beauveria
            pseudobassiana]
 gi|341859108|gb|AEK97464.1| ribosomal polymerase II second largest subunit [Beauveria varroae]
 gi|341859110|gb|AEK97465.1| ribosomal polymerase II second largest subunit [Beauveria varroae]
 gi|341859112|gb|AEK97466.1| ribosomal polymerase II second largest subunit [Beauveria varroae]
          Length = 703

 Score =  213 bits (542), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 103/264 (39%), Positives = 163/264 (61%), Gaps = 5/264 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 362  IIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSMEFLKF 421

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L +R+     K+      +  
Sbjct: 422  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYSDQEKKVGLNYTEIF 481

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT----PE 1089
              P  ++  R     +  LD+DGIVAPG ++    +++ K+ P I      + T     +
Sbjct: 482  EKPFHQSTLRMKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAP-IDPETQDLGTRTTAHQ 540

Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             +++    + +    +++V+V+ N+++   +K+ +R T+ P+IGDKF+SRHGQKG IG+ 
Sbjct: 541  RRDISTPLRSTENGIVDQVIVTVNADNVKYVKVRVRTTKIPQIGDKFASRHGQKGTIGVT 600

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
              QEDMPF   G+ PDII+NPH +
Sbjct: 601  YRQEDMPFTREGVTPDIIINPHAI 624



 Score =  150 bits (378), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 68/162 (41%), Positives = 104/162 (64%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            +++    + +    +++V+V+ N+++   +K+ +R T+ P+IGDKF+SRHGQKG IG+  
Sbjct: 542  RDISTPLRSTENGIVDQVIVTVNADNVKYVKVRVRTTKIPQIGDKFASRHGQKGTIGVTY 601

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   G+ PDII+NPH  PSRMT+  LIE L  K   +EG   + T F    +  
Sbjct: 602  RQEDMPFTREGVTPDIIINPHAIPSRMTIAHLIECLLSKVSTLEGMEGDATPFTDVTVDS 661

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLK 1344
            V + L +HGY  +G +I Y+G TG+ L A ++ GP YYQ+L+
Sbjct: 662  VSDLLRKHGYQSRGFEIMYNGHTGKKLRAQVFFGPTYYQRLR 703



 Score =  111 bits (278), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 91/151 (60%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMER-QGVTQVLSRLSYISGLGMMTRINS 243
            F++   ++  T++N L  ++ TGNW  ++  M    GV+QVL+R ++ S L  + R N+
Sbjct: 40  HFNLAVGIKPGTLSNGLKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNT 99

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNL+LM +++  +  + ++  M N
Sbjct: 100 PIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSPAEPLIDFMIN 159

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E I  +  E L  P    +FVNG   G+
Sbjct: 160 RGMEVIEEY--EPLRYPHATKIFVNGTWVGV 188



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 76/165 (46%), Gaps = 44/165 (26%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGI------RPGVT------------------- 726
           ++  +  G +EYLD  E   S I ++   +      + GV                    
Sbjct: 281 WEGLIKAGAVEYLDAEEEETSMICMTPEDLELYRLQKAGVAVDDDHGDDLNKRLKTKTNP 340

Query: 727 -----THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMG 781
                TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG
Sbjct: 341 TTHMYTHCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMG 386

Query: 782 CIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
               N   R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 387 FFLTNYSRRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 431


>gi|303273466|ref|XP_003056094.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226462178|gb|EEH59470.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 1172

 Score =  213 bits (542), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 105/262 (40%), Positives = 163/262 (62%), Gaps = 3/262 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 711  IIPFPDHNQSPRNTYQSAMGKQAMGMYVTNFQLRMDTLAYVLFYPQKPLVTTRAMEHLHF 770

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG N  + +M Y+GY+ ED++IMN++S+DRG  R + YR+ K   K+  + T + +
Sbjct: 771  RELPAGVNVVVGIMCYTGYNQEDSVIMNQSSIDRGLFRSIFYRSFKDEEKKQGSLTKEDL 830

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEY--K 1091
              P  E         +  LD+DG++ PG ++    +++ K+ P +     S A+  +  +
Sbjct: 831  ECPSPETTLGMRHGTYGKLDKDGLICPGTRVSGEDIIIGKTSP-LPDDDPSAASNRFTKR 889

Query: 1092 EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVE 1151
            +     K S    +++VL+++N +    +K+ +R  R P++GDKFSSRHGQKG IG+   
Sbjct: 890  DCSTGMKNSETGIIDQVLLTTNDQGLRFVKIRVRSCRTPQVGDKFSSRHGQKGTIGMTYT 949

Query: 1152 QEDMPFNESGICPDIIMNPHGL 1173
            QEDMPF   G+ PDII+NPH +
Sbjct: 950  QEDMPFTCEGVVPDIIVNPHAI 971



 Score =  193 bits (490), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 102/236 (43%), Positives = 143/236 (60%), Gaps = 13/236 (5%)

Query: 1139 RHGQKGVI---GLI-----VEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYK 1190
            RHG  G +   GLI     V  ED+   ++   PD   +P      +R T+ ++     K
Sbjct: 842  RHGTYGKLDKDGLICPGTRVSGEDIIIGKTSPLPDD--DPSA--ASNRFTK-RDCSTGMK 896

Query: 1191 GSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFN 1250
             S    +++VL+++N +    +K+ +R  R P++GDKFSSRHGQKG IG+   QEDMPF 
Sbjct: 897  NSETGIIDQVLLTTNDQGLRFVKIRVRSCRTPQVGDKFSSRHGQKGTIGMTYTQEDMPFT 956

Query: 1251 ESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRH 1310
              G+ PDII+NPH  PSRMT+G+L+E L GK   M G   + T F    + ++ + L + 
Sbjct: 957  CEGVVPDIIVNPHAIPSRMTIGQLVECLMGKVAAMMGKEGDATPFTPVTVENISDMLHQC 1016

Query: 1311 GYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQP 1366
            GY  +G ++ Y+G TG  LEA I+ GP YYQ+LKHMV DKIH+R RGP  +LTRQP
Sbjct: 1017 GYQKRGNEVMYNGHTGRKLEAKIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP 1072



 Score =  111 bits (277), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 60/147 (40%), Positives = 90/147 (61%), Gaps = 10/147 (6%)

Query: 192 MRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKV 251
           ++  TIT+ L  ++ TGNW  +  +  R GV+QVL+RLS+ S L  + R+NS   +  K+
Sbjct: 432 VKAKTITSGLKYSLATGNWGAQGAQDIRAGVSQVLNRLSFSSTLSHLRRLNSPIGREGKL 491

Query: 252 SGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAM 311
           + PR L  S WGM+CP++TPEG+ACGLVKNL+LM  ++  +    +L+ +     E   M
Sbjct: 492 AKPRQLHNSHWGMVCPAETPEGQACGLVKNLSLMALVSVGSPSSPVLEFL-----EEWTM 546

Query: 312 FNGEELSSPGVY----LVFVNGILAGI 334
            N EE+ SP V      +FVNG+  G+
Sbjct: 547 ENLEEI-SPSVISHATKIFVNGVWVGV 572



 Score = 98.2 bits (243), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 57/156 (36%), Positives = 82/156 (52%), Gaps = 29/156 (18%)

Query: 680 FLNMHQFLGFKRFDDFLYEGKIEYLDVNEGNDSHIAVS-------------ESGIRPGVT 726
            L      GF  ++D +  G IEY+D  E   + I+++             E+ ++  + 
Sbjct: 637 MLQEKDITGFT-WNDLVSSGCIEYVDTEEEETTMISMTIEDLVQARLLANNETSVQ-HMY 694

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+C  I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 695 THCEIHPSMILGICGSI--------------IPFPDHNQSPRNTYQSAMGKQAMGMYVTN 740

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAG 822
            Q R+DTL Y L Y Q+P+V ++ +   +F +LPAG
Sbjct: 741 FQLRMDTLAYVLFYPQKPLVTTRAMEHLHFRELPAG 776



 Score = 57.8 bits (138), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 14/114 (12%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A+D L    + H+ V       KA YL  ++ R++L        DDRD++GNKR++LAG 
Sbjct: 336 AQDILQKELLPHVGVDEECETRKAYYLGYIVHRLLLCALGRRNEDDRDHFGNKRMDLAGP 395

Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYGN 555
           L++++F  +F++   ++           KE  L+  V    + SG  + L  GN
Sbjct: 396 LIAILFRQLFRKLTKDVRLYCQRCVDSGKEIQLTLAVKAKTITSGLKYSLATGN 449



 Score = 51.6 bits (122), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 46/78 (58%), Gaps = 9/78 (11%)

Query: 343 KPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYT--------RGSQRVVRSDLV-IG 393
           KP + E+   T    P E RLR+LTYSAP+ VD+E T        + ++ V + + V IG
Sbjct: 91  KPMVTEADGMTSTLFPKEARLRNLTYSAPLYVDMEKTVTTVTLDSQKTEEVEKINKVFIG 150

Query: 394 RMPIMLQSSKCVLRNKTE 411
           ++PIML+S  C L + T+
Sbjct: 151 KVPIMLRSEYCSLHDHTD 168


>gi|56694286|gb|AAW22883.1| RNA polymerase II second largest subunit [Botrychium virginianum]
          Length = 488

 Score =  213 bits (542), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 106/261 (40%), Positives = 160/261 (61%), Gaps = 1/261 (0%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 151  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHF 210

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R + YR+ +   K+      +  
Sbjct: 211  RQLPAGINAVVAIACYSGYNQEDSVIMNQSSIDRGFFRSIFYRSYRDEEKKQGTLVKEEF 270

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYK-E 1092
              P  E  T      +  LD DG+  PG ++    V++ K+ P     + + A    K +
Sbjct: 271  ERPNRETTTGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPVPQDDSGTQAQRFTKRD 330

Query: 1093 VPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQ 1152
                 + S    +++VL+++N++    +K+ +R  R P+IGDKFS RHGQKG +G+   Q
Sbjct: 331  QXTCLRHSESGMVDQVLLTTNADGLRFVKVRMRXIRVPQIGDKFSXRHGQKGTVGMTYTQ 390

Query: 1153 EDMPFNESGICPDIIMNPHGL 1173
            EDMP+ + GI PDII+NPH +
Sbjct: 391  EDMPWTQEGITPDIIVNPHAI 411



 Score =  143 bits (361), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 65/146 (44%), Positives = 95/146 (65%)

Query: 1197 LEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICP 1256
            +++VL+++N++    +K+ +R  R P+IGDKFS RHGQKG +G+   QEDMP+ + GI P
Sbjct: 343  VDQVLLTTNADGLRFVKVRMRXIRVPQIGDKFSXRHGQKGTVGMTYTQEDMPWTQEGITP 402

Query: 1257 DIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQG 1316
            DII+NPH  PSRMT+G+LIE + GK     G   + T F    + ++ + L R GY  +G
Sbjct: 403  DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHRCGYQMRG 462

Query: 1317 KDIFYSGITGEALEAYIYSGPVYYQK 1342
             +  Y+G TG  L A I+ GP YYQ+
Sbjct: 463  FETMYNGHTGRRLNAMIFLGPTYYQR 488



 Score =  101 bits (251), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 63/171 (36%), Positives = 86/171 (50%), Gaps = 39/171 (22%)

Query: 677 RPTFLNMHQFLGFKRFD---------------DFLYEGKIEYLDVNEGNDSHIAVSESGI 721
           RP F+  +Q L  K+ D               D + +G IEY+D  E   + I+++ S +
Sbjct: 60  RPLFIVENQRLLIKKSDIRALQQKESTESGWYDLVAKGFIEYVDTEEEETTMISMTISDL 119

Query: 722 ----------RPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTY 771
                          TH EI P  +LGVCA I              +P+P HNQ+PRNTY
Sbjct: 120 VNARNHPEEAYSDTYTHCEIHPSMILGVCASI--------------IPFPDHNQSPRNTY 165

Query: 772 QCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAG 822
           Q AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F +LPAG
Sbjct: 166 QSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG 216


>gi|45545355|gb|AAS67525.1| DNA-dependent RNA polymerase II second largest subunit, partial
            [Ustilago maydis]
          Length = 887

 Score =  213 bits (542), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 107/263 (40%), Positives = 163/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            +VP+P HNQ+PRN YQ AMGKQA+G    N Q+R D++ + L+Y Q+P+  ++++    F
Sbjct: 545  IVPFPDHNQSPRNVYQSAMGKQAIGIPISNIQSRADSMAHVLLYPQKPLGTTRSMEHLRF 604

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+M YSGY+ ED++IMN++S+DRG  R + YR      K+      +  
Sbjct: 605  RELPAGQNAIVAIMCYSGYNQEDSVIMNQSSIDRGLFRSMYYRGYMAEEKKVGVMQLEEF 664

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS-AISMATPEY-- 1090
              P  +   R     +  +D DG+ APG ++    V++ K+ P    S  + M +  +  
Sbjct: 665  EKPHRDTTIRMKHGTYDKIDADGLCAPGTRVSGDDVIIGKTAPLPPDSEELGMRSKLHTK 724

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            K+  VS K +    +++VLV++NS     +K+ +R TR P+ GDKF+SRHGQKG IG+  
Sbjct: 725  KDASVSLKSTENGIIDQVLVTTNSHGNKFVKVRVRSTRVPQTGDKFASRHGQKGTIGITY 784

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF+  G+ PDII+NPH +
Sbjct: 785  RQEDMPFSAEGVTPDIIINPHAI 807



 Score =  155 bits (391), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 74/163 (45%), Positives = 101/163 (61%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            K+  VS K +    +++VLV++NS     +K+ +R TR P+ GDKF+SRHGQKG IG+  
Sbjct: 725  KDASVSLKSTENGIIDQVLVTTNSHGNKFVKVRVRSTRVPQTGDKFASRHGQKGTIGITY 784

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF+  G+ PDII+NPH  PSRMT+G L+E L  K   + G   + T F    +  
Sbjct: 785  RQEDMPFSAEGVTPDIIINPHAIPSRMTIGHLVECLLSKVAALSGQEGDATPFTELTVEA 844

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKH 1345
            V   L   GY  +G ++ Y G TG  L+A +Y GP YYQ+LKH
Sbjct: 845  VSSILRGLGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKH 887



 Score =  111 bits (277), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 53/150 (35%), Positives = 89/150 (59%), Gaps = 4/150 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F I   ++  TITN L  ++ TGNW  ++  M+ + GV+QVL+R ++ S L  + R N+
Sbjct: 236 EFHIQAAVKSSTITNGLRYSLATGNWGDQKKAMQAKAGVSQVLNRFAFASTLSHLRRTNT 295

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNL+LM  +T       +++ +  
Sbjct: 296 PIGRDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMATVTVGTPSAPIVEFLEE 355

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAG 333
            G++ +      +L+      +FVNG+  G
Sbjct: 356 FGLDSLVDM---QLAHAKATKIFVNGVWMG 382



 Score = 90.9 bits (224), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 48/130 (36%), Positives = 72/130 (55%), Gaps = 14/130 (10%)

Query: 697 YEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPG 756
           Y+ +   +++N  + S    S   I P   TH EI P  +LG+CA I             
Sbjct: 499 YKARNGQINLNSADPSARLKSVHTIAPDTWTHCEIHPAMVLGICASI------------- 545

Query: 757 LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 816
            VP+P HNQ+PRN YQ AMGKQA+G    N Q+R D++ + L+Y Q+P+  ++++    F
Sbjct: 546 -VPFPDHNQSPRNVYQSAMGKQAIGIPISNIQSRADSMAHVLLYPQKPLGTTRSMEHLRF 604

Query: 817 HKLPAGKCQI 826
            +LPAG+  I
Sbjct: 605 RELPAGQNAI 614



 Score = 52.8 bits (125), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 43/77 (55%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A++ L    + HI         KA +   MI R++LA  D   +DDRD++G KR++L G 
Sbjct: 147 AQEILQKEMLPHISTSEGSNTKKAYFFGYMIHRLLLAALDRREIDDRDHFGKKRIDLGGP 206

Query: 516 LLSLMFEDVFKRFNSEL 532
           L++ +F  +F++   ++
Sbjct: 207 LMANLFRMLFRKVTRDV 223


>gi|56694372|gb|AAW22926.1| RNA polymerase II second largest subunit [Illicium anisatum]
          Length = 539

 Score =  213 bits (542), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 107/269 (39%), Positives = 164/269 (60%), Gaps = 18/269 (6%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 193  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHF 252

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L +R+ +           ++ 
Sbjct: 253  RQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR---------DEEKK 303

Query: 1034 LGPLLEADTRKPV------YRHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            +G L++ D  +P        RH +   LD DG+  PG ++    V++ K+ P        
Sbjct: 304  MGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDEQGQ 363

Query: 1085 MATPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKG 1144
             +    ++     + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG
Sbjct: 364  ASRYTRRDHSTCLRHSESGMIDQVLLTTNADGLRFVKVRMRSVRVPQIGDKFSSRHGQKG 423

Query: 1145 VIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
             +G+   QEDMP+   GI PDII+NPH +
Sbjct: 424  TVGMTYTQEDMPWTVEGITPDIIVNPHAI 452



 Score =  161 bits (408), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 74/156 (47%), Positives = 104/156 (66%)

Query: 1197 LEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICP 1256
            +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   QEDMP+   GI P
Sbjct: 384  IDQVLLTTNADGLRFVKVRMRSVRVPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITP 443

Query: 1257 DIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQG 1316
            DII+NPH  PSRMT+G+LIE + GK     G   + T F    + ++ + L + GY  +G
Sbjct: 444  DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG 503

Query: 1317 KDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIH 1352
             +  Y+G TG  L A I+ GP YYQ+LKHMV DKIH
Sbjct: 504  FETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIH 539



 Score =  100 bits (250), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 63/171 (36%), Positives = 85/171 (49%), Gaps = 39/171 (22%)

Query: 677 RPTFLNMHQFLGFKRFD---------------DFLYEGKIEYLDVNEGNDSHIAVSESGI 721
           RP F+   Q L  K+ D               D + +G IEY+D  E   + I+++ S +
Sbjct: 102 RPLFIVEKQRLLIKKKDIRALQQRETPEEGWHDLVAKGFIEYVDTEEEETTMISMTISDL 161

Query: 722 RPG----------VTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTY 771
                          TH EI P  +LGVCA I              +P+P HNQ+PRNTY
Sbjct: 162 VTARLNPEEAISETYTHCEIHPSLILGVCASI--------------IPFPDHNQSPRNTY 207

Query: 772 QCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAG 822
           Q AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F +LPAG
Sbjct: 208 QSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG 258


>gi|399569170|gb|AFP47204.1| ribosomal polymerase II second largest subunit, partial [Beauveria
            lii]
          Length = 703

 Score =  213 bits (542), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 101/263 (38%), Positives = 162/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNT+Q AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 362  IIPFPDHNQSPRNTFQSAMGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSMEFLKF 421

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L +R+     K+      +  
Sbjct: 422  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYSDQEKKVGLNYTEIF 481

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  ++  R     +  LD+DGIVAPG ++    +++ K+ P    +       A  + 
Sbjct: 482  EKPFHQSTLRMKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAPIDPETQDLGTRTAAHQR 541

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            +++    + +    +++V+V+ N+++   +K+ +R T+ P+IGDKF+SRHGQKG IG+  
Sbjct: 542  RDISTPLRSTENGIVDQVIVTVNADNVKYVKVRVRTTKIPQIGDKFASRHGQKGTIGVTY 601

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   G+ PDII+NPH +
Sbjct: 602  RQEDMPFTREGVTPDIIINPHAI 624



 Score =  150 bits (379), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 68/162 (41%), Positives = 104/162 (64%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            +++    + +    +++V+V+ N+++   +K+ +R T+ P+IGDKF+SRHGQKG IG+  
Sbjct: 542  RDISTPLRSTENGIVDQVIVTVNADNVKYVKVRVRTTKIPQIGDKFASRHGQKGTIGVTY 601

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   G+ PDII+NPH  PSRMT+  LIE L  K   +EG   + T F    +  
Sbjct: 602  RQEDMPFTREGVTPDIIINPHAIPSRMTIAHLIECLLSKVSTLEGMEGDATPFTDVTVDS 661

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLK 1344
            V + L +HGY  +G +I Y+G TG+ L A ++ GP YYQ+L+
Sbjct: 662  VSDLLRKHGYQSRGFEIMYNGHTGKKLRAQVFFGPTYYQRLR 703



 Score =  111 bits (278), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 91/151 (60%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMER-QGVTQVLSRLSYISGLGMMTRINS 243
            F++   ++  T++N L  ++ TGNW  ++  M    GV+QVL+R ++ S L  + R N+
Sbjct: 40  HFNLAVGIKPGTLSNGLKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNT 99

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNL+LM +++  +  + ++  M N
Sbjct: 100 PIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSPAEPLIDFMIN 159

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E I  +  E L  P    +FVNG   G+
Sbjct: 160 RGMEVIEEY--EPLRYPHATKIFVNGTWVGV 188



 Score = 87.8 bits (216), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 42/100 (42%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNT+Q AMGKQAMG    N
Sbjct: 346 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTFQSAMGKQAMGFFLTN 391

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 392 YSRRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 431


>gi|341859126|gb|AEK97473.1| ribosomal polymerase II second largest subunit [Beauveria sungii]
 gi|341859128|gb|AEK97474.1| ribosomal polymerase II second largest subunit [Beauveria sungii]
 gi|341859130|gb|AEK97475.1| ribosomal polymerase II second largest subunit [Beauveria sungii]
 gi|341859132|gb|AEK97476.1| ribosomal polymerase II second largest subunit [Beauveria sungii]
 gi|341859134|gb|AEK97477.1| ribosomal polymerase II second largest subunit [Beauveria sungii]
 gi|341859136|gb|AEK97478.1| ribosomal polymerase II second largest subunit [Beauveria sungii]
 gi|341859138|gb|AEK97479.1| ribosomal polymerase II second largest subunit [Beauveria sungii]
          Length = 703

 Score =  213 bits (542), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 103/264 (39%), Positives = 163/264 (61%), Gaps = 5/264 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 362  IIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSMEFLKF 421

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L +R+     K+      +  
Sbjct: 422  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYSDQEKKVGLNYTEIF 481

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT----PE 1089
              P  ++  R     +  LD+DGIVAPG ++    +++ K+ P I      + T     +
Sbjct: 482  EKPFHQSTLRMKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAP-IDPETQDLGTRTTAHQ 540

Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             +++    + +    +++V+V+ N+++   +K+ +R T+ P+IGDKF+SRHGQKG IG+ 
Sbjct: 541  RRDISTPLRSTENGIVDQVIVTVNADNVKYVKVRVRTTKIPQIGDKFASRHGQKGTIGVT 600

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
              QEDMPF   G+ PDII+NPH +
Sbjct: 601  YRQEDMPFTREGVTPDIIINPHAI 624



 Score =  150 bits (378), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 68/162 (41%), Positives = 103/162 (63%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            +++    + +    +++V+V+ N+++   +K+ +R T+ P+IGDKF+SRHGQKG IG+  
Sbjct: 542  RDISTPLRSTENGIVDQVIVTVNADNVKYVKVRVRTTKIPQIGDKFASRHGQKGTIGVTY 601

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   G+ PDII+NPH  PSRMT+  LIE L  K   +EG   + T F    +  
Sbjct: 602  RQEDMPFTREGVTPDIIINPHAIPSRMTIAHLIECLLSKVSTLEGMEGDATPFTDVTVDS 661

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLK 1344
            V + L +HGY  +G +I Y+G TG  L A ++ GP YYQ+L+
Sbjct: 662  VSDLLRKHGYQSRGFEIMYNGHTGRKLRAQVFFGPTYYQRLR 703



 Score =  111 bits (278), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 91/151 (60%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMER-QGVTQVLSRLSYISGLGMMTRINS 243
            F++   ++  T++N L  ++ TGNW  ++  M    GV+QVL+R ++ S L  + R N+
Sbjct: 40  HFNLAVGIKPGTLSNGLKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNT 99

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNL+LM +++  +  + ++  M N
Sbjct: 100 PIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSPAEPLIDFMIN 159

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E I  +  E L  P    +FVNG   G+
Sbjct: 160 RGMEVIEEY--EPLRYPHATKIFVNGTWVGV 188



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 76/165 (46%), Gaps = 44/165 (26%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGI------RPGVT------------------- 726
           ++  +  G +EYLD  E   S I ++   +      + GV                    
Sbjct: 281 WEGLIKAGAVEYLDAEEEETSMICMTPEDLELYRLQKAGVAVDDDHGDDLNKRLKTKTNP 340

Query: 727 -----THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMG 781
                TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG
Sbjct: 341 TTHMYTHCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMG 386

Query: 782 CIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
               N   R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 387 FFLTNYSRRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 431


>gi|341859082|gb|AEK97451.1| ribosomal polymerase II second largest subunit [Beauveria asiatica]
          Length = 703

 Score =  213 bits (542), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 103/264 (39%), Positives = 163/264 (61%), Gaps = 5/264 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 362  IIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSMEFLKF 421

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L +R+     K+      +  
Sbjct: 422  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYSDQEKKVGLNYTEIF 481

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT----PE 1089
              P  ++  R     +  LD+DGIVAPG ++    +++ K+ P I      + T     +
Sbjct: 482  EKPFHQSTLRMKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAP-IDPETQDLGTRTTAHQ 540

Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             +++    + +    +++V+V+ N+++   +K+ +R T+ P+IGDKF+SRHGQKG IG+ 
Sbjct: 541  RRDISTPLRSTENGIVDQVIVTVNADNVKYVKVRVRTTKIPQIGDKFASRHGQKGTIGVT 600

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
              QEDMPF   G+ PDII+NPH +
Sbjct: 601  YRQEDMPFTREGVTPDIIINPHAI 624



 Score =  149 bits (377), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 68/162 (41%), Positives = 104/162 (64%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            +++    + +    +++V+V+ N+++   +K+ +R T+ P+IGDKF+SRHGQKG IG+  
Sbjct: 542  RDISTPLRSTENGIVDQVIVTVNADNVKYVKVRVRTTKIPQIGDKFASRHGQKGTIGVTY 601

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   G+ PDII+NPH  PSRMT+  LIE L  K   +EG   + T F    +  
Sbjct: 602  RQEDMPFTREGVTPDIIINPHAIPSRMTIAHLIECLLSKVSTLEGMEGDATPFTDVTVDS 661

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLK 1344
            V + L +HGY  +G +I Y+G TG+ L A ++ GP YYQ+L+
Sbjct: 662  VSDLLRQHGYQSRGFEIMYNGHTGKKLRAQVFFGPTYYQRLR 703



 Score =  111 bits (278), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 91/151 (60%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMER-QGVTQVLSRLSYISGLGMMTRINS 243
            F++   ++  T++N L  ++ TGNW  ++  M    GV+QVL+R ++ S L  + R N+
Sbjct: 40  HFNLAVGIKPGTLSNGLKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNT 99

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNL+LM +++  +  + ++  M N
Sbjct: 100 PIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSPAEPLIDFMIN 159

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E I  +  E L  P    +FVNG   G+
Sbjct: 160 RGMEVIEEY--EPLRYPHATKIFVNGTWVGV 188



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 76/165 (46%), Gaps = 44/165 (26%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGI------RPGVT------------------- 726
           ++  +  G +EYLD  E   S I ++   +      + GV                    
Sbjct: 281 WEGLIKAGAVEYLDAEEEETSMICMTPEDLELYRLQKAGVAVEDDHGDDLNKRLKTKTNP 340

Query: 727 -----THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMG 781
                TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG
Sbjct: 341 TTHMYTHCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMG 386

Query: 782 CIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
               N   R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 387 FFLTNYSRRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 431


>gi|241898907|gb|ACS71537.1| RNA polymerase II subunit [Spathularia velutipes]
          Length = 614

 Score =  213 bits (542), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 102/263 (38%), Positives = 159/263 (60%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DT+   L Y Q+P+  ++++    F
Sbjct: 350  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYQQRMDTMANILYYPQKPLATTRSMEFLKF 409

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  Y+GY+ ED++IM ++S+DRG  R L YR      K+    T +  
Sbjct: 410  RELPAGQNAIVAIACYTGYNQEDSVIMXQSSIDRGLFRSLFYRAYTDQEKRVGMATIESF 469

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAISMATPEY-- 1090
              P      R     +  LD+DGIV+PG ++    +++ K+ P       +   T  +  
Sbjct: 470  EKPNRSDTIRLKTATYDKLDEDGIVSPGVRVSGEDIIIGKTAPIAPDAEELGQRTKAHTK 529

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++     + +    +++VL+++N++    +K+ +R T+ P+IGDKF+SRHGQKG +G+  
Sbjct: 530  RDASTPLRSTENGIVDQVLLTTNADGLRFVKVRMRTTKXPQIGDKFASRHGQKGTVGITY 589

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 590  RQEDMPFTREGIVPDIIINPHAI 612



 Score =  115 bits (289), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 56/154 (36%), Positives = 93/154 (60%), Gaps = 3/154 (1%)

Query: 182 KAAQFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTR 240
           K ++F++   ++  TITN L  ++ TGNW   ++      GV+QVL+R ++ S L  + R
Sbjct: 22  KQSEFNLTLAVKSSTITNGLKYSLATGNWGDQKKAASSTAGVSQVLNRYTFASTLSHLRR 81

Query: 241 INSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKI 300
            N+   +  K++ PR L  + WG++CP++TPEG+ACGLVKNL+LM ++T       +++ 
Sbjct: 82  TNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVTVGTPSDPIVEF 141

Query: 301 MYNIGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
           M   G++ +  +  E L SP    VFVNG+  G+
Sbjct: 142 MIQRGMDVLEEY--EPLRSPNSTKVFVNGVWVGV 173



 Score = 93.2 bits (230), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/175 (33%), Positives = 82/175 (46%), Gaps = 47/175 (26%)

Query: 682 NMHQFLGFKRFDDFLYEGKIEYLDVNEGNDSHIAVS-------------------ESG-- 720
           N H + GF   +  L  G +EY+D  E     I ++                   +SG  
Sbjct: 262 NKHGYFGF---NGLLDSGVVEYVDAEEEETIMIVMTPEDLEISRQIQAGLEQQPDDSGDL 318

Query: 721 -------IRPG--VTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTY 771
                  + P   + TH EI P  +LG+CA I              +P+P HNQ+PRNTY
Sbjct: 319 NKRVKAPVNPTAHIWTHCEIHPSMILGICASI--------------IPFPDHNQSPRNTY 364

Query: 772 QCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
           Q AMGKQAMG    N Q R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 365 QSAMGKQAMGVFLTNYQQRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 419



 Score = 92.0 bits (227), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 37/71 (52%), Positives = 54/71 (76%)

Query: 1197 LEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICP 1256
            +++VL+++N++    +K+ +R T+ P+IGDKF+SRHGQKG +G+   QEDMPF   GI P
Sbjct: 544  VDQVLLTTNADGLRFVKVRMRTTKXPQIGDKFASRHGQKGTVGITYRQEDMPFTREGIVP 603

Query: 1257 DIIMNPHGYPS 1267
            DII+NPH  PS
Sbjct: 604  DIIINPHAIPS 614


>gi|52699822|gb|AAU86973.1| DNA-dependent RNA polymerase II second largest subunit [Peltula
            umbilicata]
          Length = 704

 Score =  213 bits (542), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 103/263 (39%), Positives = 159/263 (60%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMG QAMG        R+DT+   L Y Q+P+  ++++    F
Sbjct: 354  IIPFPDHNQSPRNTYQSAMGXQAMGXXXXXXXXRMDTMSNILYYPQKPLATTRSMEFLKF 413

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR      K+   Q  ++ 
Sbjct: 414  RELPAGQNAIVAIAVYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQEKRAGMQVVEQF 473

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEY--- 1090
              P+     R     +  LD+DGI+ PG ++    +++ K+ P    +       +Y   
Sbjct: 474  EKPMRSDTVRLKHGTYDKLDEDGIINPGVRVSGEDIIIGKTAPIAPDAEELGQRTKYHNK 533

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    + +    +++VLV++N+E    +K+ +R T+ P+IGDKF+SRHGQKG IG+  
Sbjct: 534  RDVSTPLRSTESGIVDQVLVTTNAEGLRFVKVRMRTTKVPQIGDKFASRHGQKGTIGITY 593

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PD+I+NPH +
Sbjct: 594  RQEDMPFTREGIVPDLIINPHAI 616



 Score =  162 bits (410), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 90/240 (37%), Positives = 132/240 (55%), Gaps = 13/240 (5%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESG-ICPDIIMNPHGL 1173
            ++ Q  +P   D    +HG      + G+I  G+ V  ED+   ++  I PD       L
Sbjct: 469  VVEQFEKPMRSDTVRLKHGTYDKLDEDGIINPGVRVSGEDIIIGKTAPIAPDA----EEL 524

Query: 1174 KGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
                +    ++V    + +    +++VLV++N+E    +K+ +R T+ P+IGDKF+SRHG
Sbjct: 525  GQRTKYHNKRDVSTPLRSTESGIVDQVLVTTNAEGLRFVKVRMRTTKVPQIGDKFASRHG 584

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGT 1293
            QKG IG+   QEDMPF   GI PD+I+NPH  PSRMT+  LIE    K   ++G   + T
Sbjct: 585  QKGTIGITYRQEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQLSKVSALKGFEGDAT 644

Query: 1294 AFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHA 1353
             F    +  V   L  HGY  +G ++ Y+G TG  L A I+ GP YYQ+L+HMV  KI A
Sbjct: 645  PFTDVTVDSVSALLREHGYQSRGXEVMYNGHTGRKLVAQIFLGPTYYQRLRHMVDXKIXA 704



 Score =  115 bits (287), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 94/151 (62%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++Q TITN L  ++ TGNW   ++    + GV+QVL+R ++ S L  + R N+
Sbjct: 34  EFNLNIGVKQATITNGLKYSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNT 93

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT  ++   +++ M +
Sbjct: 94  PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGSESLPIIQYMTS 153

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
             +E +  +  E   SP    VF+NG+  G+
Sbjct: 154 RNMEMLEEY--EPQRSPNATKVFLNGVWVGV 182



 Score = 85.1 bits (209), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/100 (41%), Positives = 56/100 (56%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMG QAMG     
Sbjct: 338 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGXQAMGXXXXX 383

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 384 XXXRMDTMSNILYYPQKPLATTRSMEFLKFRELPAGQNAI 423


>gi|418204386|gb|AFX61747.1| RNA polymerase II second-largest subunit, partial [Ascosphaera
            aggregata]
          Length = 1109

 Score =  213 bits (542), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 163/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R++T+   L Y Q+P+  ++++    F
Sbjct: 776  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDQRMETMSNILYYPQKPLATTRSMEFLKF 835

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR      K+      ++ 
Sbjct: 836  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRCYTDSEKKIGVAVVEKF 895

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS-AISMATPEYKE 1092
              P  E   R   + +  LD DGI A G  +    +++ K+ P    S  +   T ++ +
Sbjct: 896  EYPSKEETLRMKNHPYDKLDHDGIAAVGMHVSGNDIIIGKTAPLAPESEELGQRTKQHTK 955

Query: 1093 VPVS--YKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            + VS   + +   ++++VLVS++S+D   +K+ +R T+ P+IGDKF+SRHGQKG IG+  
Sbjct: 956  LDVSTQLRSTENGHVDQVLVSTSSDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITY 1015

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   G+ PD+I+NPH +
Sbjct: 1016 CQEDMPFTREGVTPDLIINPHAI 1038



 Score =  132 bits (333), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 63/153 (41%), Positives = 93/153 (60%)

Query: 1184 EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVE 1243
            +V    + +   ++++VLVS++S+D   +K+ +R T+ P+IGDKF+SRHGQKG IG+   
Sbjct: 957  DVSTQLRSTENGHVDQVLVSTSSDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYC 1016

Query: 1244 QEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDV 1303
            QEDMPF   G+ PD+I+NPH  PSRMT+  LIE    K   + G   + T F    +  V
Sbjct: 1017 QEDMPFTREGVTPDLIINPHAIPSRMTIAHLIECQLSKVSALRGFEGDATPFTDVTVDSV 1076

Query: 1304 QEELIRHGYNYQGKDIFYSGITGEALEAYIYSG 1336
               L  HGY  +G ++ Y+G TG  L A ++ G
Sbjct: 1077 SRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLG 1109



 Score =  107 bits (266), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 53/144 (36%), Positives = 87/144 (60%), Gaps = 3/144 (2%)

Query: 192 MRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRK 250
           ++  T++  L  A+ TGNW   ++    + GV+QVL+R +Y S L  + R N+   +  K
Sbjct: 459 IKTATLSGGLKYALATGNWGEQKKAASSKAGVSQVLNRYTYSSTLSHLRRTNTPIGRDGK 518

Query: 251 VSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIA 310
           ++ PR L  + WG++CP++TPEG+ACGLVKNL+LM  IT  +    +++ + +  +E + 
Sbjct: 519 IAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCTITVGSGTAGIIEFLISQHMEVLE 578

Query: 311 MFNGEELSSPGVYLVFVNGILAGI 334
            F  E   SP V  VF+NG+  G+
Sbjct: 579 EF--EPQVSPDVTKVFLNGVWVGV 600



 Score = 87.8 bits (216), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/100 (42%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 760 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 805

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R++T+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 806 FDQRMETMSNILYYPQKPLATTRSMEFLKFRELPAGQNAI 845



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 2/78 (2%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMV-LALSDPDMLDDRDYYGNKRLELAG 514
           ARD +    + HI         KA +   MI +++  AL   D +DDRD++G KRL+LAG
Sbjct: 363 ARDIMQKEFLPHISQSEGSETRKAFFFGYMIHKLLQCALGRRD-VDDRDHFGKKRLDLAG 421

Query: 515 SLLSLMFEDVFKRFNSEL 532
            LL+ +F  +F R   +L
Sbjct: 422 PLLAGLFRTLFMRLTKDL 439


>gi|169844839|ref|XP_001829140.1| DNA-dependent RNA polymerase II second largest subunit [Coprinopsis
            cinerea okayama7#130]
 gi|116509880|gb|EAU92775.1| DNA-dependent RNA polymerase II second largest subunit [Coprinopsis
            cinerea okayama7#130]
          Length = 1222

 Score =  213 bits (542), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 104/263 (39%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 752  IIPFPDHNQSPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKF 811

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQN+ +A++ YSGY+ ED++I+N++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 812  RELPAGQNSIVAILCYSGYNQEDSVIVNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEF 871

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  E   R     +  ++ DG++APG  +    +++ K+ P    S        T   
Sbjct: 872  EKPTRETTLRMKHGTYDKIEDDGLIAPGTNVTGEDIIIGKTAPIPPDSEELGQRTRTHTR 931

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 932  RDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGIAY 991

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PD+I+NPH +
Sbjct: 992  RQEDMPFTAEGIVPDLIINPHAI 1014



 Score =  190 bits (482), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 90/188 (47%), Positives = 122/188 (64%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 932  RDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGIAY 991

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PD+I+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 992  RQEDMPFTAEGIVPDLIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVEG 1051

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
            V   L + GY  +G ++ Y G TG  L+A +Y GP YYQ+LKHMV DKIH+R+RGP  +L
Sbjct: 1052 VSTFLRQRGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMVDDKIHSRARGPVQIL 1111

Query: 1363 TRQPTGRR 1370
            TRQP   R
Sbjct: 1112 TRQPVEGR 1119



 Score =  110 bits (274), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 90/151 (59%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 447 EFNLSLAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT 506

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM  I+  +    +++ +  
Sbjct: 507 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEE 566

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E +        S+     VFVNG+  G+
Sbjct: 567 WGLESL---EENAHSTTPCTKVFVNGVWMGV 594



 Score = 88.2 bits (217), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 84/165 (50%), Gaps = 22/165 (13%)

Query: 718 ESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGK 777
           ++G      TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGK
Sbjct: 727 KAGTHAHTWTHCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGK 772

Query: 778 QAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQISPGGAEELTAR 837
           QAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  I    A    + 
Sbjct: 773 QAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNSIV---AILCYSG 829

Query: 838 ESCHEVLKIISFSISVAVFDSVWLG-----DVKQGVHQLSEEKEP 877
            +  + + +   SI   +F S++       + K G+ QL E ++P
Sbjct: 830 YNQEDSVIVNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEFEKP 874



 Score = 59.3 bits (142), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 58/114 (50%), Gaps = 14/114 (12%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A++ L    + HI +       KA +   MI R++LA  +   LDDRD++G KRL+LAG 
Sbjct: 358 AQEILQKEMLPHISMAEGSESKKAYFFGYMIHRLLLAALERRELDDRDHFGKKRLDLAGP 417

Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYGN 555
           LL+ +F  +F++   ++           KE NLS  V    + +G  + L  GN
Sbjct: 418 LLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLSLAVKHQTITNGLKYSLATGN 471



 Score = 42.4 bits (98), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 29/44 (65%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSD 157
           D W ++ SF  +KGLV+  +DSFD F+   +++L+  N+++  D
Sbjct: 33  DCWTVISSFFDQKGLVRQQLDSFDEFVQNTMQELVDENSDLILD 76


>gi|346320677|gb|EGX90277.1| DNA-directed RNA polymerase II polypeptide [Cordyceps militaris CM01]
          Length = 1261

 Score =  213 bits (542), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 103/264 (39%), Positives = 163/264 (61%), Gaps = 5/264 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 790  IIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSMEFLKF 849

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L +R+     K+      +  
Sbjct: 850  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYSDQEKKVGLNYTEIF 909

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATP----E 1089
              P  ++  R     +  LD+DGIVAPG ++    +++ K+ P I      + T     +
Sbjct: 910  EKPFHQSTLRMKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAP-IDPETQDLGTRTTAHQ 968

Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             +++    + +    +++V+V+ N+++   +K+ +R T+ P+IGDKF+SRHGQKG IG+ 
Sbjct: 969  RRDISTPLRSTENGIVDQVIVTVNADNVKYVKVRVRTTKIPQIGDKFASRHGQKGTIGVT 1028

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
              QEDMPF   G+ PDII+NPH +
Sbjct: 1029 YRQEDMPFTREGVTPDIIINPHAI 1052



 Score =  187 bits (474), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 85/190 (44%), Positives = 125/190 (65%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            +++    + +    +++V+V+ N+++   +K+ +R T+ P+IGDKF+SRHGQKG IG+  
Sbjct: 970  RDISTPLRSTENGIVDQVIVTVNADNVKYVKVRVRTTKIPQIGDKFASRHGQKGTIGVTY 1029

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   G+ PDII+NPH  PSRMT+  LIE L  K   +EG   + T F    +  
Sbjct: 1030 RQEDMPFTREGVTPDIIINPHAIPSRMTIAHLIECLLSKVSTLEGMEGDATPFTDVTVDS 1089

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
            V + L +HGY  +G +I Y+G TG+ L A ++ GP YYQ+L+HMV DKIHAR+RGP  ++
Sbjct: 1090 VSDLLRKHGYQSRGFEIMYNGHTGKKLRAQVFFGPTYYQRLRHMVDDKIHARARGPVQIM 1149

Query: 1363 TRQPTGRRWK 1372
            TRQP   R +
Sbjct: 1150 TRQPVEGRAR 1159



 Score =  110 bits (274), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 53/151 (35%), Positives = 90/151 (59%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
            F++   ++  T++N L  ++ TGNW   ++      GV+QVL+R ++ S L  + R N+
Sbjct: 467 HFNLAVGIKPGTLSNGLKYSLATGNWGDQKKAANSTAGVSQVLNRYTFASTLSHLRRTNT 526

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNL+LM +++  +  + ++  M N
Sbjct: 527 PIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSPAEPLIDFMIN 586

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E I  +  E L  P    +FVNG   G+
Sbjct: 587 RGMEVIEEY--EPLRYPHATKIFVNGTWVGV 615



 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 774 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGFFLTN 819

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 820 YSRRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 859



 Score = 53.9 bits (128), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 42/77 (54%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           ARD L    + HI         KA ++  M+ +++         DDRD++G KRL+LAG 
Sbjct: 378 ARDILQKETLPHISQEAGSETRKAFFIGYMVHKLLQCALGRREPDDRDHFGKKRLDLAGP 437

Query: 516 LLSLMFEDVFKRFNSEL 532
           LL+ +F  + +R +SEL
Sbjct: 438 LLAKLFRGIMRRMHSEL 454


>gi|300394752|gb|ADK11914.1| DNA-directed RNA polymerase II subunit two, partial [Serpula
            lacrymans]
          Length = 659

 Score =  213 bits (542), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 107/264 (40%), Positives = 163/264 (61%), Gaps = 4/264 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN- 972
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++ I + 
Sbjct: 353  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMDIPDQ 412

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  + 
Sbjct: 413  FRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEE 472

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPE 1089
               P  +   R     +  L+ DG++APG  +    +++ K+ P    S        T  
Sbjct: 473  FEKPTRDNTLRMKHGTYDKLEDDGLIAPGTGVSGEDIIIGKTAPIPPDSEELGQRTRTHT 532

Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+ 
Sbjct: 533  RRDVSTPIKSTENGIVDQVLITTNSEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGIT 592

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
              QEDMPF   GI PDI++NPH +
Sbjct: 593  YRQEDMPFTAEGIVPDIVINPHAI 616



 Score =  120 bits (301), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 54/113 (47%), Positives = 75/113 (66%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 534  RDVSTPIKSTENGIVDQVLITTNSEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 593

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAF 1295
             QEDMPF   GI PDI++NPH  PSRMT+G L+E L  K   + GN  + T F
Sbjct: 594  RQEDMPFTAEGIVPDIVINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPF 646



 Score =  111 bits (277), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 93/151 (61%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 46  EFNLSLAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT 105

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM+ I+  +    +++ +  
Sbjct: 106 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSYSAPVIEFLEE 165

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E  ++      S+P    VFVNG+  G+
Sbjct: 166 WGLE--SLEENAHSSTPCTK-VFVNGVWMGV 193



 Score = 87.4 bits (215), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 61/178 (34%), Positives = 91/178 (51%), Gaps = 23/178 (12%)

Query: 706 VNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQ 765
            N+G+    A  ++G      TH EI P  +LGVCA I              +P+P HNQ
Sbjct: 316 TNDGDYDPAARLKAGNNSHTWTHCEIHPSMILGVCASI--------------IPFPDHNQ 361

Query: 766 APRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN-FHKLPAGKC 824
           +PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++ I + F +LPAG+ 
Sbjct: 362 SPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMDIPDQFRELPAGQN 421

Query: 825 QISPGGAEELTARESCHEVLKIISFSISVAVFDSVWLG-----DVKQGVHQLSEEKEP 877
            I    A    +  +  + + +   SI   +F S++       + K GV QL E ++P
Sbjct: 422 AIV---AILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKP 476


>gi|341859154|gb|AEK97487.1| ribosomal polymerase II second largest subunit [Beauveria
            malawiensis]
 gi|341859156|gb|AEK97488.1| ribosomal polymerase II second largest subunit [Beauveria
            malawiensis]
 gi|341859158|gb|AEK97489.1| ribosomal polymerase II second largest subunit [Beauveria
            malawiensis]
          Length = 703

 Score =  213 bits (542), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 103/264 (39%), Positives = 163/264 (61%), Gaps = 5/264 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 362  IIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSMEFLKF 421

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L +R+     K+      +  
Sbjct: 422  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYSDQEKKVGLNYTEIF 481

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT----PE 1089
              P  ++  R     +  LD+DGIVAPG ++    +++ K+ P I      + T     +
Sbjct: 482  EKPFHQSTLRMKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAP-IDPETQDLGTRTTAHQ 540

Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             +++    + +    +++V+V+ N+++   +K+ +R T+ P+IGDKF+SRHGQKG IG+ 
Sbjct: 541  RRDISTPLRSTENGIVDQVIVTVNADNVKYVKVRVRTTKIPQIGDKFASRHGQKGTIGVT 600

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
              QEDMPF   G+ PDII+NPH +
Sbjct: 601  YRQEDMPFTREGVTPDIIINPHAI 624



 Score =  150 bits (378), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 68/162 (41%), Positives = 104/162 (64%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            +++    + +    +++V+V+ N+++   +K+ +R T+ P+IGDKF+SRHGQKG IG+  
Sbjct: 542  RDISTPLRSTENGIVDQVIVTVNADNVKYVKVRVRTTKIPQIGDKFASRHGQKGTIGVTY 601

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   G+ PDII+NPH  PSRMT+  LIE L  K   +EG   + T F    +  
Sbjct: 602  RQEDMPFTREGVTPDIIINPHAIPSRMTIAHLIECLLSKVSTLEGMEGDATPFTDVTVDS 661

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLK 1344
            V + L +HGY  +G +I Y+G TG+ L A ++ GP YYQ+L+
Sbjct: 662  VSDLLRKHGYQSRGFEIMYNGHTGKKLRAQVFFGPTYYQRLR 703



 Score =  111 bits (278), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 91/151 (60%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMER-QGVTQVLSRLSYISGLGMMTRINS 243
            F++   ++  T++N L  ++ TGNW  ++  M    GV+QVL+R ++ S L  + R N+
Sbjct: 40  HFNLAVGIKPGTLSNGLKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNT 99

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNL+LM +++  +  + ++  M N
Sbjct: 100 PIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSPAEPLIDFMIN 159

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E I  +  E L  P    +FVNG   G+
Sbjct: 160 RGMEVIEEY--EPLRYPHATKIFVNGTWVGV 188



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 76/165 (46%), Gaps = 44/165 (26%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGI------RPGVT------------------- 726
           ++  +  G +EYLD  E   S I ++   +      + GV                    
Sbjct: 281 WEGLIKAGAVEYLDAEEEETSMICMTPEDLELYRLQKAGVAVDDDHGDDLNKRLKTKTNP 340

Query: 727 -----THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMG 781
                TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG
Sbjct: 341 TTHMYTHCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMG 386

Query: 782 CIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
               N   R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 387 FFLTNYSRRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 431


>gi|341859084|gb|AEK97452.1| ribosomal polymerase II second largest subunit [Beauveria australis]
 gi|341859086|gb|AEK97453.1| ribosomal polymerase II second largest subunit [Beauveria australis]
 gi|341859088|gb|AEK97454.1| ribosomal polymerase II second largest subunit [Beauveria australis]
          Length = 703

 Score =  213 bits (542), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 103/264 (39%), Positives = 163/264 (61%), Gaps = 5/264 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 362  IIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSMEFLKF 421

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L +R+     K+      +  
Sbjct: 422  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYSDQEKKVGLNYTEIF 481

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT----PE 1089
              P  ++  R     +  LD+DGIVAPG ++    +++ K+ P I      + T     +
Sbjct: 482  EKPFHQSTLRMKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAP-IDPETQDLGTRTTAHQ 540

Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             +++    + +    +++V+V+ N+++   +K+ +R T+ P+IGDKF+SRHGQKG IG+ 
Sbjct: 541  RRDISTPLRSTENGIVDQVIVTVNADNVKYVKVRVRTTKIPQIGDKFASRHGQKGTIGVT 600

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
              QEDMPF   G+ PDII+NPH +
Sbjct: 601  YRQEDMPFTREGVTPDIIINPHAI 624



 Score =  150 bits (378), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 68/162 (41%), Positives = 104/162 (64%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            +++    + +    +++V+V+ N+++   +K+ +R T+ P+IGDKF+SRHGQKG IG+  
Sbjct: 542  RDISTPLRSTENGIVDQVIVTVNADNVKYVKVRVRTTKIPQIGDKFASRHGQKGTIGVTY 601

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   G+ PDII+NPH  PSRMT+  LIE L  K   +EG   + T F    +  
Sbjct: 602  RQEDMPFTREGVTPDIIINPHAIPSRMTIAHLIECLLSKVSTLEGMEGDATPFTDVTVDS 661

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLK 1344
            V + L +HGY  +G +I Y+G TG+ L A ++ GP YYQ+L+
Sbjct: 662  VSDLLRKHGYQSRGFEIMYNGHTGKKLRAQVFFGPTYYQRLR 703



 Score =  111 bits (278), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 91/151 (60%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMER-QGVTQVLSRLSYISGLGMMTRINS 243
            F++   ++  T++N L  ++ TGNW  ++  M    GV+QVL+R ++ S L  + R N+
Sbjct: 40  HFNLAVGIKPGTLSNGLKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNT 99

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNL+LM +++  +  + ++  M N
Sbjct: 100 PIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSPAEPLIDFMIN 159

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E I  +  E L  P    +FVNG   G+
Sbjct: 160 RGMEVIEEY--EPLRYPHATKIFVNGTWVGV 188



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 76/165 (46%), Gaps = 44/165 (26%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGI------RPGVT------------------- 726
           ++  +  G +EYLD  E   S I ++   +      + GV                    
Sbjct: 281 WEGLIKAGAVEYLDAEEEETSMICMTPEDLELYRLQKAGVAVDDDHGDDLNKRLKTKTNP 340

Query: 727 -----THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMG 781
                TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG
Sbjct: 341 TTHMYTHCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMG 386

Query: 782 CIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
               N   R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 387 FFLTNYSRRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 431


>gi|327298359|ref|XP_003233873.1| DNA-dependent RNA polymerase II RPB140 [Trichophyton rubrum CBS
            118892]
 gi|326464051|gb|EGD89504.1| DNA-dependent RNA polymerase II RPB140 [Trichophyton rubrum CBS
            118892]
          Length = 1258

 Score =  213 bits (542), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 107/286 (37%), Positives = 168/286 (58%), Gaps = 3/286 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N + R++T+   L Y Q+P+  ++++    F
Sbjct: 787  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFEQRMETMANILYYPQKPLATTRSMEFLKF 846

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQN  +A+  YSGY+ ED++IMN++S+DRG  R L YR      K       +R 
Sbjct: 847  RELPAGQNVIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMIGLTVVERF 906

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAISMATPEYKE 1092
              P+     R     +  +D DGIV+PG ++    +++ K+ P       +   T ++ +
Sbjct: 907  EKPMRSDTLRMKHGTYDKVDDDGIVSPGVRVSGEDIIIGKTSPLAPEAEELGQRTKQHTK 966

Query: 1093 VPVS--YKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            + VS   + +    +++VLVS++++D   +K+ +R T+ P+IGDKF+SRHGQKG IG+  
Sbjct: 967  LDVSTPLRSTESGIVDQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITY 1026

Query: 1151 EQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSY 1196
              EDMPF   G+ PD+I+NPH +     I    E  +S   S+  Y
Sbjct: 1027 RHEDMPFTREGVTPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGY 1072



 Score =  180 bits (456), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 84/189 (44%), Positives = 119/189 (62%)

Query: 1184 EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVE 1243
            +V    + +    +++VLVS++++D   +K+ +R T+ P+IGDKF+SRHGQKG IG+   
Sbjct: 968  DVSTPLRSTESGIVDQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYR 1027

Query: 1244 QEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDV 1303
             EDMPF   G+ PD+I+NPH  PSRMT+  LIE    K   + G   + T F    +  V
Sbjct: 1028 HEDMPFTREGVTPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGYEGDATPFTDVTVDSV 1087

Query: 1304 QEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLT 1363
               L  HGY  +G ++ Y+G TG  L A ++ GP YYQ+L+HMV DKIHAR+RGP  +LT
Sbjct: 1088 SSLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHARARGPTQILT 1147

Query: 1364 RQPTGRRWK 1372
            RQP   R +
Sbjct: 1148 RQPVEGRAR 1156



 Score =  109 bits (273), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 56/144 (38%), Positives = 84/144 (58%), Gaps = 3/144 (2%)

Query: 192 MRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRK 250
           ++  T+T  L  A+ TGNW   ++    + GV+QVL+R +Y S L  + R N+   +  K
Sbjct: 470 VKASTLTGGLKYALATGNWGEQKKAASSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGK 529

Query: 251 VSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIA 310
           ++ PR L  + WG++CP++TPEG+ACGLVKNLALM  IT     + ++  M    +E + 
Sbjct: 530 IAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCCITVGTPSEPIIDFMIQRNMEVLE 589

Query: 311 MFNGEELSSPGVYLVFVNGILAGI 334
            F  E   SP    VFVNG+  G+
Sbjct: 590 EF--EPQVSPNSTKVFVNGVWVGV 611



 Score = 88.6 bits (218), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 41/97 (42%), Positives = 58/97 (59%), Gaps = 14/97 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 771 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 816

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
            + R++T+   L Y Q+P+  ++++    F +LPAG+
Sbjct: 817 FEQRMETMANILYYPQKPLATTRSMEFLKFRELPAGQ 853



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 44/78 (56%), Gaps = 2/78 (2%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMV-LALSDPDMLDDRDYYGNKRLELAG 514
           ARD +    + HI         KA +L  M+ R++  AL   D +DDRD++G KRL+LAG
Sbjct: 374 ARDIIQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRD-VDDRDHFGKKRLDLAG 432

Query: 515 SLLSLMFEDVFKRFNSEL 532
            LL+ +F  +F R   +L
Sbjct: 433 PLLANLFRVLFMRLTKDL 450


>gi|52699788|gb|AAU86956.1| DNA-dependent RNA polymerase II second largest subunit [Acarospora
            clauzadeana]
          Length = 723

 Score =  213 bits (542), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 106/264 (40%), Positives = 166/264 (62%), Gaps = 5/264 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG      + R+DT+   L Y Q+P+  ++++    F
Sbjct: 373  IIPFPDHNQSPRNTYQSAMGKQAMGXXXXXYEQRMDTMANILYYPQKPLATTRSMEFLKF 432

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR+     K+      ++ 
Sbjct: 433  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSVVEQF 492

Query: 1034 LGPLLEADTRKPVY-RHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAISMATPEY- 1090
              P + +DT K  +  +  LD DGIVAPG ++    +++ K+ P       +   T  + 
Sbjct: 493  EKP-MRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKLHI 551

Query: 1091 -KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             ++V    + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHGQKG IG+ 
Sbjct: 552  KRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGIT 611

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
              QEDMPF + GI PD+I+NPH +
Sbjct: 612  YRQEDMPFTKEGIVPDLIINPHAI 635



 Score =  158 bits (400), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 87/240 (36%), Positives = 134/240 (55%), Gaps = 13/240 (5%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESG-ICPDIIMNPHGL 1173
            ++ Q  +P   D    +HG        G++  G+ V  ED+   ++  I PD       L
Sbjct: 488  VVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDA----EEL 543

Query: 1174 KGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
                ++   ++V    + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHG
Sbjct: 544  GQRTKLHIKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHG 603

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGT 1293
            QKG IG+   QEDMPF + GI PD+I+NPH  PSRMT+  LIE    K   + G   + T
Sbjct: 604  QKGTIGITYRQEDMPFTKEGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDAT 663

Query: 1294 AFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHA 1353
             F    +  V + L  HGY  +G ++ ++G TG  L A ++ GP YYQ+L+HMV DKI A
Sbjct: 664  PFTEITVDSVSKLLREHGYQSRGFEVMHNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIXA 723



 Score =  113 bits (282), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 90/151 (59%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW   ++    + GV+QVL+R ++ S L  + R N+
Sbjct: 36  EFNLTLGVKSTTITNGLKYSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNT 95

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM +I+     + ++  M  
Sbjct: 96  PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYISVGTPSEPIIDFMVQ 155

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
             +E +  +  E   SP    VFVNG+  G+
Sbjct: 156 RNMEVLEEY--EPQRSPNATKVFVNGVWVGV 184



 Score = 88.2 bits (217), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/100 (42%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG     
Sbjct: 357 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGXXXXX 402

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
            + R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 403 YEQRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 442


>gi|300394764|gb|ADK11920.1| DNA-directed RNA polymerase II subunit two, partial [Pseudoclitocybe
            cyathiformis]
          Length = 569

 Score =  213 bits (542), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 160/263 (60%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 225  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKF 284

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 285  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEF 344

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              PL +   R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 345  EKPLRDNTLRMKHGTYDKLEDDGLIAPGTGVAGEDIIIGKTAPIPPDSEELGQRTRTHTR 404

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ +R TR P+ GDKF+SRH QKG IG+  
Sbjct: 405  RDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRSTRIPQTGDKFASRHXQKGTIGITY 464

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 465  RQEDMPFTAEGIVPDIIINPHAI 487



 Score =  157 bits (397), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 74/165 (44%), Positives = 103/165 (62%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++NSE    +K+ +R TR P+ GDKF+SRH QKG IG+  
Sbjct: 405  RDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRSTRIPQTGDKFASRHXQKGTIGITY 464

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 465  RQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVES 524

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMV 1347
            V   L + GY  +G ++ + G TG  L+A +Y GP YYQ+LKHMV
Sbjct: 525  VSTXLRQKGYQSRGLEVMFHGHTGRKLQAQVYLGPTYYQRLKHMV 569



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/121 (38%), Positives = 67/121 (55%), Gaps = 14/121 (11%)

Query: 706 VNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQ 765
            ++G+    A  ++GI     TH EI P  +LG+CA I              +P+P HNQ
Sbjct: 188 TDDGDFDPAARLKAGINAHTWTHCEIHPSMILGICASI--------------IPFPDHNQ 233

Query: 766 APRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQ 825
           +PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  
Sbjct: 234 SPRNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNA 293

Query: 826 I 826
           I
Sbjct: 294 I 294



 Score = 53.5 bits (127), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 3/69 (4%)

Query: 266 CPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMFNGEELSSPGVYLV 325
           CP++TPEG+ACGLVKNLALM  I+  +    +++ +   G+E  ++      S+P    V
Sbjct: 1   CPAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEEWGLE--SLEENAHSSTPCTK-V 57

Query: 326 FVNGILAGI 334
           FVNG+  G+
Sbjct: 58  FVNGVWMGV 66


>gi|45545351|gb|AAS67523.1| DNA-dependent RNA polymerase II second largest subunit, partial
            [Thamnolia vermicularis]
          Length = 893

 Score =  213 bits (542), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 112/287 (39%), Positives = 169/287 (58%), Gaps = 5/287 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 551  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDERMDTMTNILYYPQKPLATTRSMEFLKF 610

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR      K+      +  
Sbjct: 611  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRVYTDQEKRVGMSVVEMF 670

Query: 1034 LGPLLEADTRKPVY-RHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAISMATPEY- 1090
              P + +DT K  +  +  LD DG+VAPG ++    +++ K+ P       +   T  + 
Sbjct: 671  EKP-MRSDTLKLKHGTYDKLDDDGLVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKLHI 729

Query: 1091 -KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             ++V    + +    ++KVL+++N E    +K+ +R T+ P+IGDKF+SRHGQKG IG+ 
Sbjct: 730  KRDVSTPLRSTENGLVDKVLLTTNHEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGIT 789

Query: 1150 VEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSY 1196
              QEDMPF   GI PD+I+NPH +     I    E  +S   S+  Y
Sbjct: 790  YRQEDMPFTSEGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGY 836



 Score =  147 bits (372), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 82/226 (36%), Positives = 122/226 (53%), Gaps = 13/226 (5%)

Query: 1129 RPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESG-ICPDIIMNPHGLKGCDRI 1179
            +P   D    +HG        G++  G+ V  ED+   ++  I PD       L    ++
Sbjct: 672  KPMRSDTLKLKHGTYDKLDDDGLVAPGVRVSGEDIIIGKTAPIAPD----AEELGQRTKL 727

Query: 1180 TEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1239
               ++V    + +    ++KVL+++N E    +K+ +R T+ P+IGDKF+SRHGQKG IG
Sbjct: 728  HIKRDVSTPLRSTENGLVDKVLLTTNHEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIG 787

Query: 1240 LIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTK 1299
            +   QEDMPF   GI PD+I+NPH  PSRMT+  LIE    K   + G   + T F    
Sbjct: 788  ITYRQEDMPFTSEGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGYEGDATPFTEVT 847

Query: 1300 LVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKH 1345
            +  V   L  HGY  +G ++ Y+G TG  L A ++ GP YYQ+L+H
Sbjct: 848  VDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRH 893



 Score =  113 bits (283), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 91/151 (60%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  T+TN L  ++ TGNW   ++    + GV+QVL+R ++ S L  + R N+
Sbjct: 228 EFNLTLGVKSTTLTNGLKYSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNT 287

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM  +T  +  + ++  M  
Sbjct: 288 PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCCVTVGSPSEPIIDFMVQ 347

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
             +E +  +  E L SP    VFVNG+  G+
Sbjct: 348 RNMEILEEY--EPLRSPNATKVFVNGVWVGV 376



 Score = 90.1 bits (222), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 535 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 580

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 581 FDERMDTMTNILYYPQKPLATTRSMEFLKFRELPAGQNAI 620



 Score = 55.8 bits (133), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 58/117 (49%), Gaps = 20/117 (17%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMV---LALSDPDMLDDRDYYGNKRLEL 512
           ARD +    + HI  +      KA +L  M+ RM+   L   DPD   DRD++G KRL+L
Sbjct: 139 ARDIMQKELLPHISQVEGSETRKAFFLGYMVHRMLQVALGRRDPD---DRDHFGKKRLDL 195

Query: 513 AGSLLSLMFEDVFKRFNSEL-----------KETNLS-GV--VNLVSGWWFELKYGN 555
           AG L++ +F  +F +   ++           +E NL+ GV    L +G  + L  GN
Sbjct: 196 AGPLMAGLFRMLFNKLTKDVYKYLQKCVESNREFNLTLGVKSTTLTNGLKYSLATGN 252


>gi|17552304|ref|NP_498047.1| Protein RPB-2 [Caenorhabditis elegans]
 gi|2507348|sp|Q10578.2|RPB2_CAEEL RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA
            polymerase II subunit 2; Short=RNA polymerase II subunit
            B2
 gi|351058294|emb|CCD65728.1| Protein RPB-2 [Caenorhabditis elegans]
          Length = 1193

 Score =  213 bits (542), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 108/266 (40%), Positives = 168/266 (63%), Gaps = 9/266 (3%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DTL + L Y Q+P+V ++++    F
Sbjct: 716  IIPFPDHNQSPRNTYQSAMGKQAMGVYTTNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRF 775

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
            ++LPAG NA +A++SYSGY+ ED++IMN +++DRG  R + YR+ +       N   + I
Sbjct: 776  NELPAGINAIVAILSYSGYNQEDSVIMNNSAIDRGLFRSVFYRSYRDNEANLDNANEELI 835

Query: 1034 LGPLLE--ADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKS--MPTI--SVSAISMAT 1087
              P  E  +  R  +Y    LD+DGI++PG ++    V++ K+  +P I   + A     
Sbjct: 836  EKPTREKCSGMRHSLYDK--LDEDGIISPGMRVSGDDVIIGKTVALPDIDDDLDASGKKY 893

Query: 1088 PEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
            P+ ++     + S    +++V++S NS+    +K+ +R  R P+IGDKF+SRHGQKG +G
Sbjct: 894  PK-RDASTFLRSSETGIVDQVMLSLNSDGNKFVKIRMRSVRLPQIGDKFASRHGQKGTMG 952

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            ++  QEDMPF   G+ PDII+NPH +
Sbjct: 953  IMYRQEDMPFTAEGLTPDIIINPHAV 978



 Score =  182 bits (462), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 96/236 (40%), Positives = 142/236 (60%), Gaps = 10/236 (4%)

Query: 1142 QKGVI--GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEK 1199
            + G+I  G+ V  +D+   ++   PDI      L    +    ++     + S    +++
Sbjct: 856  EDGIISPGMRVSGDDVIIGKTVALPDI---DDDLDASGKKYPKRDASTFLRSSETGIVDQ 912

Query: 1200 VLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDII 1259
            V++S NS+    +K+ +R  R P+IGDKF+SRHGQKG +G++  QEDMPF   G+ PDII
Sbjct: 913  VMLSLNSDGNKFVKIRMRSVRLPQIGDKFASRHGQKGTMGIMYRQEDMPFTAEGLTPDII 972

Query: 1260 MNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQE---ELIRHGYNYQG 1316
            +NPH  PSRMT+G LIE L GK    +G   + T F  T  V+VQ+    L  +GY+ +G
Sbjct: 973  INPHAVPSRMTIGHLIECLQGKLSANKGEIGDATPFNDT--VNVQKISGLLCEYGYHLRG 1030

Query: 1317 KDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
             ++ Y+G TG+ L   I+ GP YYQ+LKHMV DKIH+R+RGP  ++ RQP   R +
Sbjct: 1031 NEVMYNGHTGKKLTTQIFFGPTYYQRLKHMVDDKIHSRARGPIQMMNRQPMEGRAR 1086



 Score =  111 bits (278), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 67/171 (39%), Positives = 99/171 (57%), Gaps = 14/171 (8%)

Query: 174 ADKIIPKIKAAQFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYI 232
           A K I K      D+   ++  TIT  LT ++ TGNW   ++    R GV+QVL+RL+Y 
Sbjct: 425 AQKYINKNDDFALDVC--VKTSTITRGLTYSLATGNWGDQKKAHQSRAGVSQVLNRLTYT 482

Query: 233 SGLGMMTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTEN 292
           + L  + R NS   +  K++ PR L  +QWGM+CP++TPEG+A GLVKNLALM +I+  +
Sbjct: 483 ATLSHLRRANSPIGREGKLAKPRQLHNTQWGMVCPAETPEGQAVGLVKNLALMAYISVGS 542

Query: 293 DEKNMLKIMYNIGIEHIAMFNGEELSSPGVY---LVFVNGILAGITCHHKE 340
             + +L+ +     E  +M N EE+S   +     +FVNG   GI   H+E
Sbjct: 543 LPEPILEFL-----EEWSMENLEEVSPSAIADATKIFVNGAWVGI---HRE 585



 Score =  100 bits (250), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 55/135 (40%), Positives = 75/135 (55%), Gaps = 18/135 (13%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPG----VTTHLEIAPFTLLGVCAGIELLQ 747
           + D +  G +E +D  E   S IA+    +R G      TH EI P  +LGVCA I    
Sbjct: 661 WSDLVGGGVVELIDSMEEETSMIAMMPEDLRSGGYCDTHTHCEIHPAMILGVCASI---- 716

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                     +P+P HNQ+PRNTYQ AMGKQAMG    N   R+DTL + L Y Q+P+V 
Sbjct: 717 ----------IPFPDHNQSPRNTYQSAMGKQAMGVYTTNFHVRMDTLAHVLYYPQKPLVT 766

Query: 808 SKTIRITNFHKLPAG 822
           ++++    F++LPAG
Sbjct: 767 TRSMEYLRFNELPAG 781



 Score = 60.1 bits (144), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 46/80 (57%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           AR+ L    + H+ V       KA ++  M+ R++LA      LDDRD+ GNKRL+LAG 
Sbjct: 345 AREILQKELLPHVGVSEHCETKKAFFIGYMVHRLLLAALGRRELDDRDHIGNKRLDLAGP 404

Query: 516 LLSLMFEDVFKRFNSELKET 535
           LL+ +F  +F+    E++ T
Sbjct: 405 LLAFLFRSLFRNLLKEMRMT 424



 Score = 48.5 bits (114), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 39/58 (67%), Gaps = 4/58 (6%)

Query: 358 PHECRLRDLTYSAPITVDIE--YTR--GSQRVVRSDLVIGRMPIMLQSSKCVLRNKTE 411
           P+E RLR+LTY++P+ VDI    TR   +   V   + +G++P+ML+SS C+L N T+
Sbjct: 117 PNEARLRNLTYASPLYVDITKVVTRDDSATEKVYDKVFVGKVPVMLRSSYCMLSNMTD 174


>gi|341859140|gb|AEK97480.1| ribosomal polymerase II second largest subunit [Beauveria caledonica]
 gi|341859142|gb|AEK97481.1| ribosomal polymerase II second largest subunit [Beauveria caledonica]
 gi|341859144|gb|AEK97482.1| ribosomal polymerase II second largest subunit [Beauveria caledonica]
 gi|341859146|gb|AEK97483.1| ribosomal polymerase II second largest subunit [Beauveria caledonica]
 gi|341859148|gb|AEK97484.1| ribosomal polymerase II second largest subunit [Beauveria caledonica]
 gi|341859150|gb|AEK97485.1| ribosomal polymerase II second largest subunit [Beauveria caledonica]
          Length = 703

 Score =  213 bits (542), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 103/264 (39%), Positives = 163/264 (61%), Gaps = 5/264 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 362  IIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSMEFLKF 421

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L +R+     K+      +  
Sbjct: 422  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYSDQEKKVGLNYTEIF 481

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATP----E 1089
              P  ++  R     +  LD+DGIVAPG ++    +++ K+ P I      + T     +
Sbjct: 482  EKPFHQSTLRMKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAP-IDPETQDLGTRTTAHQ 540

Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             +++    + +    +++V+V+ N+++   +K+ +R T+ P+IGDKF+SRHGQKG IG+ 
Sbjct: 541  RRDISTPLRSTENGIVDQVIVTVNADNVKYVKVRVRTTKIPQIGDKFASRHGQKGTIGVT 600

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
              QEDMPF   G+ PDII+NPH +
Sbjct: 601  YRQEDMPFTREGVTPDIIINPHAI 624



 Score =  150 bits (379), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 68/162 (41%), Positives = 104/162 (64%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            +++    + +    +++V+V+ N+++   +K+ +R T+ P+IGDKF+SRHGQKG IG+  
Sbjct: 542  RDISTPLRSTENGIVDQVIVTVNADNVKYVKVRVRTTKIPQIGDKFASRHGQKGTIGVTY 601

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   G+ PDII+NPH  PSRMT+  LIE L  K   +EG   + T F    +  
Sbjct: 602  RQEDMPFTREGVTPDIIINPHAIPSRMTIAHLIECLLSKVSTLEGMEGDATPFTDVTVDS 661

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLK 1344
            V + L +HGY  +G +I Y+G TG+ L A ++ GP YYQ+L+
Sbjct: 662  VSDLLRKHGYQSRGFEIMYNGHTGKKLRAQVFFGPTYYQRLR 703



 Score =  111 bits (278), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 91/151 (60%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMER-QGVTQVLSRLSYISGLGMMTRINS 243
            F++   ++  T++N L  ++ TGNW  ++  M    GV+QVL+R ++ S L  + R N+
Sbjct: 40  HFNLAVGIKPGTLSNGLKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNT 99

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNL+LM +++  +  + ++  M N
Sbjct: 100 PIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSPAEPLIDFMIN 159

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E I  +  E L  P    +FVNG   G+
Sbjct: 160 RGMEVIEEY--EPLRYPHATKIFVNGTWVGV 188



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 76/165 (46%), Gaps = 44/165 (26%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIR--------------PG------------- 724
           ++  +  G +EYLD  E   S I ++   +               PG             
Sbjct: 281 WEGLIKAGAVEYLDAEEEETSMICMTPEDLELYRLQKAGVAVDDDPGDDLNKRLKTKTNP 340

Query: 725 ---VTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMG 781
              + TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG
Sbjct: 341 TTHMYTHCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMG 386

Query: 782 CIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
               N   R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 387 FFLTNYSRRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 431


>gi|341859046|gb|AEK97433.1| ribosomal polymerase II second largest subunit [Beauveria
            brongniartii]
 gi|341859048|gb|AEK97434.1| ribosomal polymerase II second largest subunit [Beauveria
            brongniartii]
 gi|341859050|gb|AEK97435.1| ribosomal polymerase II second largest subunit [Beauveria
            brongniartii]
 gi|341859052|gb|AEK97436.1| ribosomal polymerase II second largest subunit [Beauveria
            brongniartii]
 gi|341859054|gb|AEK97437.1| ribosomal polymerase II second largest subunit [Beauveria
            brongniartii]
 gi|341859056|gb|AEK97438.1| ribosomal polymerase II second largest subunit [Beauveria
            brongniartii]
 gi|341859058|gb|AEK97439.1| ribosomal polymerase II second largest subunit [Beauveria
            brongniartii]
 gi|341859064|gb|AEK97442.1| ribosomal polymerase II second largest subunit [Beauveria
            brongniartii]
 gi|341859066|gb|AEK97443.1| ribosomal polymerase II second largest subunit [Beauveria
            brongniartii]
 gi|341859068|gb|AEK97444.1| ribosomal polymerase II second largest subunit [Beauveria
            brongniartii]
 gi|341859070|gb|AEK97445.1| ribosomal polymerase II second largest subunit [Beauveria
            brongniartii]
 gi|341859114|gb|AEK97467.1| ribosomal polymerase II second largest subunit [Beauveria kipukae]
          Length = 703

 Score =  213 bits (542), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 103/264 (39%), Positives = 163/264 (61%), Gaps = 5/264 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 362  IIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSMEFLKF 421

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L +R+     K+      +  
Sbjct: 422  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYSDQEKKVGLNYTEIF 481

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT----PE 1089
              P  ++  R     +  LD+DGIVAPG ++    +++ K+ P I      + T     +
Sbjct: 482  EKPFHQSTLRMKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAP-IDPETQDLGTRTTAHQ 540

Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             +++    + +    +++V+V+ N+++   +K+ +R T+ P+IGDKF+SRHGQKG IG+ 
Sbjct: 541  RRDISTPLRSTENGIVDQVIVTVNADNVKYVKVRVRTTKIPQIGDKFASRHGQKGTIGVT 600

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
              QEDMPF   G+ PDII+NPH +
Sbjct: 601  YRQEDMPFTREGVTPDIIINPHAI 624



 Score =  150 bits (378), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 68/162 (41%), Positives = 104/162 (64%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            +++    + +    +++V+V+ N+++   +K+ +R T+ P+IGDKF+SRHGQKG IG+  
Sbjct: 542  RDISTPLRSTENGIVDQVIVTVNADNVKYVKVRVRTTKIPQIGDKFASRHGQKGTIGVTY 601

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   G+ PDII+NPH  PSRMT+  LIE L  K   +EG   + T F    +  
Sbjct: 602  RQEDMPFTREGVTPDIIINPHAIPSRMTIAHLIECLLSKVSTLEGMEGDATPFTDVTVDS 661

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLK 1344
            V + L +HGY  +G +I Y+G TG+ L A ++ GP YYQ+L+
Sbjct: 662  VSDLLRKHGYQSRGFEIMYNGHTGKKLRAQVFFGPTYYQRLR 703



 Score =  111 bits (278), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 91/151 (60%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMER-QGVTQVLSRLSYISGLGMMTRINS 243
            F++   ++  T++N L  ++ TGNW  ++  M    GV+QVL+R ++ S L  + R N+
Sbjct: 40  HFNLAVGIKPGTLSNGLKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNT 99

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNL+LM +++  +  + ++  M N
Sbjct: 100 PIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSPAEPLIDFMIN 159

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E I  +  E L  P    +FVNG   G+
Sbjct: 160 RGMEVIEEY--EPLRYPHATKIFVNGTWVGV 188



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 76/165 (46%), Gaps = 44/165 (26%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGI------RPGVT------------------- 726
           ++  +  G +EYLD  E   S I ++   +      + GV                    
Sbjct: 281 WEGLIKAGAVEYLDAEEEETSMICMTPEDLELYRLQKAGVAVDDDHGDDLNKRLKTKTNP 340

Query: 727 -----THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMG 781
                TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG
Sbjct: 341 TTHMYTHCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMG 386

Query: 782 CIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
               N   R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 387 FFLTNYSRRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 431


>gi|123979394|gb|ABM81522.1| RNA polymerase II second largest subunit [Thelotrema lepadinum]
          Length = 703

 Score =  213 bits (542), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 105/263 (39%), Positives = 158/263 (60%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 362  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDERMDTMANILYYPQKPLATTRSMEFLKF 421

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR      K+      ++ 
Sbjct: 422  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYVEQEKRVGMSLVEQF 481

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAISMATPEY-- 1090
              PL     R     +  LD DG++APG ++    V++ K+ P       +   T  +  
Sbjct: 482  EKPLRSETLRLKHGTYEKLDDDGLIAPGVRVSGEDVIIGKTAPIAPDTEELGQRTKLHNK 541

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++     + +    ++KVL+++N E    +K+ +R T+ P+IGDKF+SRHGQKG IG+  
Sbjct: 542  RDASTPLRSTENGIVDKVLLTTNQEGLKFVKVRMRTTKVPQIGDKFASRHGQKGTIGITY 601

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PD+I+NPH +
Sbjct: 602  RQEDMPFTAEGITPDLIINPHAI 624



 Score =  146 bits (368), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 82/231 (35%), Positives = 123/231 (53%), Gaps = 13/231 (5%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESG-ICPDIIMNPHGL 1173
            L+ Q  +P   +    +HG        G+I  G+ V  ED+   ++  I PD       L
Sbjct: 477  LVEQFEKPLRSETLRLKHGTYEKLDDDGLIAPGVRVSGEDVIIGKTAPIAPDT----EEL 532

Query: 1174 KGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
                ++   ++     + +    ++KVL+++N E    +K+ +R T+ P+IGDKF+SRHG
Sbjct: 533  GQRTKLHNKRDASTPLRSTENGIVDKVLLTTNQEGLKFVKVRMRTTKVPQIGDKFASRHG 592

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGT 1293
            QKG IG+   QEDMPF   GI PD+I+NPH  PSRMT+  LIE    K   + G   + T
Sbjct: 593  QKGTIGITYRQEDMPFTAEGITPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDAT 652

Query: 1294 AFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLK 1344
             F    +  V   L  HGY  +G ++ Y+G TG  L A ++ GP YYQ+L+
Sbjct: 653  PFTEVTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLRAQVFFGPTYYQRLR 703



 Score =  116 bits (291), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 56/150 (37%), Positives = 94/150 (62%), Gaps = 3/150 (2%)

Query: 186 FDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINSQ 244
           F++   ++  T+TN L  ++ TGNWT ++   + + GV+QVL+R ++ S L  + R N+ 
Sbjct: 40  FNVTLGVKSTTLTNGLKYSLATGNWTEQKKAAQGKAGVSQVLNRYTFASTLSHLRRTNTP 99

Query: 245 FEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNI 304
             +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT  +  + +++ M   
Sbjct: 100 LGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGSPGEPIIEFMVQR 159

Query: 305 GIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            +E +  +  E   SP +  VFVNG+  G+
Sbjct: 160 NMELLEEY--EPTRSPHITKVFVNGVWVGV 187



 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 346 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 391

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 392 FDERMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 431


>gi|119644256|gb|ABL85615.1| RNA polymerase II second largest subunit [Degelia plumbea]
          Length = 718

 Score =  213 bits (542), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 105/264 (39%), Positives = 167/264 (63%), Gaps = 5/264 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N + R+DT+   L Y Q+P+  ++++    F
Sbjct: 370  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYEQRMDTMANILYYPQKPLATTRSMEFLKF 429

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR+     K+      ++ 
Sbjct: 430  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRVGMTIVEQF 489

Query: 1034 LGPLLEADTRKPVY-RHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAISMATPEY- 1090
              P +++DT K  +  +  LD DGIV+PG ++    +++ K+ P       +   T  + 
Sbjct: 490  EKP-MKSDTLKLKHGTYDKLDDDGIVSPGVRVFGDDIVIGKTAPIAPDAEELGQRTKLHV 548

Query: 1091 -KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             ++V    + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHGQKG IG+ 
Sbjct: 549  KRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKVPQIGDKFASRHGQKGTIGIT 608

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
              QEDMPF   G+ PD+I+NPH +
Sbjct: 609  YRQEDMPFTSEGVVPDLIINPHAI 632



 Score =  157 bits (396), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 85/238 (35%), Positives = 131/238 (55%), Gaps = 13/238 (5%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESG-ICPDIIMNPHGL 1173
            ++ Q  +P   D    +HG        G++  G+ V  +D+   ++  I PD       L
Sbjct: 485  IVEQFEKPMKSDTLKLKHGTYDKLDDDGIVSPGVRVFGDDIVIGKTAPIAPD----AEEL 540

Query: 1174 KGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
                ++   ++V    + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHG
Sbjct: 541  GQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKVPQIGDKFASRHG 600

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGT 1293
            QKG IG+   QEDMPF   G+ PD+I+NPH  PSRMT+  LIE    K   + G   + T
Sbjct: 601  QKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDAT 660

Query: 1294 AFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKI 1351
             F    +  V   L  HGY  +G ++ Y+G TG  L A ++ GP YYQ+L+HMV DKI
Sbjct: 661  PFTEVTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKI 718



 Score =  115 bits (289), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 92/151 (60%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  T+TN L  ++ TGNW   ++    + GV+QVL+R ++ S L  + R N+
Sbjct: 46  EFNLTLGIKSTTLTNGLKYSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNT 105

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT  +  + ++  M  
Sbjct: 106 PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGSPSEPIIDFMMK 165

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
             +E +  +  E L SP    VFVNG+  G+
Sbjct: 166 RNMEILEEY--EPLRSPNATKVFVNGVWVGV 194



 Score = 91.3 bits (225), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 59/100 (59%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 354 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 399

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
            + R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 400 YEQRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 439


>gi|145592515|ref|YP_001154517.1| DNA-directed RNA polymerase subunit B [Pyrobaculum arsenaticum DSM
            13514]
 gi|145284283|gb|ABP51865.1| DNA-directed RNA polymerase, subunit B' / DNA-directed RNA
            polymerase, subunit B' [Pyrobaculum arsenaticum DSM
            13514]
          Length = 1127

 Score =  213 bits (542), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 105/266 (39%), Positives = 167/266 (62%), Gaps = 10/266 (3%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+  HNQ+PRN Y+ AM KQ++G    N   ++D+  + L Y +RP+V ++ + +  +
Sbjct: 661  IIPFLEHNQSPRNQYEAAMAKQSLGLPQSNFLYKLDSRGHMLYYPERPIVTTRGLELVGY 720

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             K PAGQNA +A+++Y+GY+IEDA+I+NKAS++RG  R + YR  +   ++YP    D+I
Sbjct: 721  SKRPAGQNAVVALLTYTGYNIEDAVILNKASVERGMFRSVFYRTYETEEQRYPGGEEDKI 780

Query: 1034 LGPLLEADTRKPVYR----HRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMA--T 1087
              P    D+    YR    +  LD+DGI  P   +   +VL+ K+ P    + +      
Sbjct: 781  EIP----DSSVKGYRGPEAYSHLDEDGIAPPEVYVSSSEVLIGKTSPPRFYTTLETERIL 836

Query: 1088 PEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
             E ++  V+ +      +++V+V+ + E   L+K+ LR+ R PE+GDKF+SRHGQKGV+G
Sbjct: 837  KERRDASVAVRRGEKGIVDRVIVTESPEGNKLVKVRLRELRIPELGDKFASRHGQKGVVG 896

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            +++ QEDMPF E GI PDII+NPH L
Sbjct: 897  MLLRQEDMPFTEEGIVPDIIVNPHAL 922



 Score =  212 bits (540), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 101/192 (52%), Positives = 137/192 (71%)

Query: 1179 ITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVI 1238
            + E ++  V+ +      +++V+V+ + E   L+K+ LR+ R PE+GDKF+SRHGQKGV+
Sbjct: 836  LKERRDASVAVRRGEKGIVDRVIVTESPEGNKLVKVRLRELRIPELGDKFASRHGQKGVV 895

Query: 1239 GLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGT 1298
            G+++ QEDMPF E GI PDII+NPH  PSRMTV +L+E +AGK G   GN  + T F G 
Sbjct: 896  GMLLRQEDMPFTEEGIVPDIIVNPHALPSRMTVAQLLESMAGKVGAATGNLVDATPFEGV 955

Query: 1299 KLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGP 1358
            K  D+++ L++ GY + GK++ YSGITGE L A I+ G VYYQKL HMV DKIHAR+RGP
Sbjct: 956  KEEDLRKLLLKLGYKWDGKEVMYSGITGEKLVADIFIGIVYYQKLHHMVADKIHARARGP 1015

Query: 1359 RVVLTRQPTGRR 1370
              +LTRQPT  R
Sbjct: 1016 VQILTRQPTEGR 1027



 Score = 97.8 bits (242), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 57/152 (37%), Positives = 82/152 (53%), Gaps = 8/152 (5%)

Query: 192 MRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKV 251
           +R D IT  +  A+ TGNW        + GV+Q+L R +Y+S L  + R+ S   +T+  
Sbjct: 406 VRPDIITERVRQALATGNWV-----GGKTGVSQILDRTNYLSTLSYLRRVVSSLSRTQPH 460

Query: 252 SGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAM 311
              R L  +QWG LC  +TPEG+  GLVKNLAL+  ITT  DE ++ +++   G+  I  
Sbjct: 461 FEARDLHPTQWGRLCAVETPEGQNVGLVKNLALLAEITTGVDENDVEQMLLQQGVVPILK 520

Query: 312 FNGEELSSPGVYLVFVNGILAGITCHHKEVCK 343
              E +    VYL   NG L GI    +E+ K
Sbjct: 521 AREEGVRGAEVYL---NGRLIGIHPEPEELVK 549



 Score = 90.9 bits (224), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 74/135 (54%), Gaps = 15/135 (11%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKR 751
           +DD L  G +EYLD +E  ++HIAV   G     T H+EI P ++LG  A I        
Sbjct: 611 WDDLLKMGVVEYLDADEEENAHIAVDPEGDLSNYT-HVEIIPSSILGAIASI-------- 661

Query: 752 FHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTI 811
                 +P+  HNQ+PRN Y+ AM KQ++G    N   ++D+  + L Y +RP+V ++ +
Sbjct: 662 ------IPFLEHNQSPRNQYEAAMAKQSLGLPQSNFLYKLDSRGHMLYYPERPIVTTRGL 715

Query: 812 RITNFHKLPAGKCQI 826
            +  + K PAG+  +
Sbjct: 716 ELVGYSKRPAGQNAV 730



 Score = 42.4 bits (98), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 33/67 (49%)

Query: 340 EVCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIML 399
           EV  P I+ES        P E RLR+ TYSAP+ +        +        IG +PIM+
Sbjct: 78  EVGWPRIKESDGSESLIYPMEARLRNATYSAPLYLTAVLYVDDEPYATETFYIGELPIMV 137

Query: 400 QSSKCVL 406
           +S +C L
Sbjct: 138 KSKRCNL 144


>gi|46277261|gb|AAS86821.1| RNA polymerase II second largest subunit, partial [Akebia
            longeracemosa]
          Length = 575

 Score =  213 bits (542), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 109/270 (40%), Positives = 167/270 (61%), Gaps = 19/270 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 202  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHF 261

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L +R+ +           ++ 
Sbjct: 262  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLSFRSYR---------DEEKK 312

Query: 1034 LGPLLEADTRKPV------YRHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            +G L++ D  +P        RH +   LD DG+  PG ++    V++ K+ P     +  
Sbjct: 313  MGTLVKEDFGRPNRDNTMGMRHGSYDKLDDDGLAPPGIRVSGEDVIIGKTTPIAQEESQG 372

Query: 1085 MATP-EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1143
             A+    ++   S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQK
Sbjct: 373  QASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQK 432

Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G +G+   QEDMP+   GI PDII+NPH +
Sbjct: 433  GTVGMTYTQEDMPWTVEGITPDIIVNPHAI 462



 Score =  181 bits (458), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 86/184 (46%), Positives = 119/184 (64%)

Query: 1187 VSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQED 1246
             S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   QED
Sbjct: 384  TSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 443

Query: 1247 MPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEE 1306
            MP+   GI PDII+NPH  PSRMT+G+LIE + GK     G   + T F    + ++ + 
Sbjct: 444  MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 503

Query: 1307 LIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQP 1366
            L + GY  +G +  Y+G TG  L A I+ GP YYQ+LKHMV DKIH+R RGP  +LTRQP
Sbjct: 504  LHKCGYQMRGFETMYNGHTGRKLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP 563

Query: 1367 TGRR 1370
               R
Sbjct: 564  AEGR 567



 Score = 97.4 bits (241), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 54/141 (38%), Positives = 77/141 (54%), Gaps = 24/141 (17%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPG----------VTTHLEIAPFTLLGVCA 741
           + + + +G IEY+D  E   + I+++ + +               TH EI P  +LGVCA
Sbjct: 141 WHELVAKGFIEYVDTEEEETTMISMTINDLVSARFNPEEAYSETYTHCEIHPSLILGVCA 200

Query: 742 GIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYA 801
            I              +P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y 
Sbjct: 201 SI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYP 246

Query: 802 QRPMVESKTIRITNFHKLPAG 822
           Q+P+V ++ +   +F +LPAG
Sbjct: 247 QKPLVTTRAMEHLHFRQLPAG 267



 Score = 51.6 bits (122), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 8/69 (11%)

Query: 269 DTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMFNGEELSS---PGVYLV 325
           +TPEG+ACGLVKNLALM +IT  +  + +L+ +     E  +  N EE+S    P    +
Sbjct: 1   ETPEGQACGLVKNLALMVYITVGSAARPILEFL-----EEWSTENFEEISPAVIPQATKI 55

Query: 326 FVNGILAGI 334
           FVNG   GI
Sbjct: 56  FVNGCWVGI 64


>gi|56694366|gb|AAW22923.1| RNA polymerase II second largest subunit [Trimenia moorei]
          Length = 531

 Score =  213 bits (542), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 109/269 (40%), Positives = 167/269 (62%), Gaps = 19/269 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 202  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHF 261

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L +R+ +           ++ 
Sbjct: 262  RQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR---------DEEKK 312

Query: 1034 LGPLLEADTRKPV------YRHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            +G L++ D  +P        RH +   LD DG+  PG ++    V++ K+ P I+     
Sbjct: 313  MGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP-IAQDEGQ 371

Query: 1085 MATPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKG 1144
             +    ++   S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG
Sbjct: 372  PSRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRVPQIGDKFSSRHGQKG 431

Query: 1145 VIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
             +G+   QEDMP+   GI PDII+NPH +
Sbjct: 432  TVGMTYTQEDMPWTVEGITPDIIVNPHAI 460



 Score =  120 bits (302), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 59/150 (39%), Positives = 88/150 (58%)

Query: 1187 VSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQED 1246
             S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   QED
Sbjct: 382  TSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRVPQIGDKFSSRHGQKGTVGMTYTQED 441

Query: 1247 MPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEE 1306
            MP+   GI PDII+NPH  PSRMT+G+L            G   + T F    + ++ + 
Sbjct: 442  MPWTVEGITPDIIVNPHAIPSRMTIGQLXXXXXXXXXAHMGKEGDATPFTDVTVDNISKA 501

Query: 1307 LIRHGYNYQGKDIFYSGITGEALEAYIYSG 1336
            L + GY  +G +  Y+G TG  L A I+ G
Sbjct: 502  LHKCGYQMRGFETMYNGHTGRRLSAMIFLG 531



 Score =  101 bits (251), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 63/171 (36%), Positives = 85/171 (49%), Gaps = 39/171 (22%)

Query: 677 RPTFLNMHQFLGFKRFD---------------DFLYEGKIEYLDVNEGNDSHIAVSESGI 721
           RP F+   Q L  K+ D               D + +G IEY+D  E   + I+++ S +
Sbjct: 111 RPLFIVEKQRLLIKKKDIRALQLRESVEEGWHDLVAKGFIEYVDTEEEETTMISMTISDL 170

Query: 722 RPG----------VTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTY 771
                          TH EI P  +LGVCA I              +P+P HNQ+PRNTY
Sbjct: 171 VSARHNPEEAYSETYTHCEIHPSLILGVCASI--------------IPFPDHNQSPRNTY 216

Query: 772 QCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAG 822
           Q AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F +LPAG
Sbjct: 217 QSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG 267



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 41/70 (58%), Gaps = 8/70 (11%)

Query: 268 SDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMFNGEELSS---PGVYL 324
           ++TPEG+ACGLVKNLALM +IT  +    +L+ +     E  +  N EE+S    P    
Sbjct: 1   AETPEGQACGLVKNLALMVYITVGSAANPILEFL-----EEWSTENFEEISPAVIPQATK 55

Query: 325 VFVNGILAGI 334
           +FVNG   GI
Sbjct: 56  IFVNGCWVGI 65


>gi|46277289|gb|AAS86835.1| RNA polymerase II second largest subunit, partial [Camellia japonica]
          Length = 591

 Score =  213 bits (542), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 113/279 (40%), Positives = 168/279 (60%), Gaps = 37/279 (13%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 221  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHF 280

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NAT+A+  YSGY+ ED+LIMN++S+DRGF R L +R+ +           ++ 
Sbjct: 281  RQLPAGINATVAIACYSGYNQEDSLIMNQSSIDRGFFRSLFFRSYR---------DEEKK 331

Query: 1034 LGPLLEADTRKPV------YRHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            +G L++ D   P        RH +   LD DG+  PG ++    V++ K+ P +      
Sbjct: 332  MGTLIKEDFGCPNRDNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPMV------ 385

Query: 1085 MATPEYKEVPVS----------YKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGD 1134
               PE  + P S           + S    +++VL+++N++    +K+ +R  R P+IGD
Sbjct: 386  ---PEETQGPSSRYTRRDHSTALRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGD 442

Query: 1135 KFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            KFSSRHGQKG +G+   QEDMP++  GI PDII+NPH +
Sbjct: 443  KFSSRHGQKGTVGMTYTQEDMPWSIEGITPDIIVNPHAI 481



 Score =  180 bits (457), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 89/203 (43%), Positives = 126/203 (62%)

Query: 1168 MNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDK 1227
            M P   +G       ++   + + S    +++VL+++N++    +K+ +R  R P+IGDK
Sbjct: 384  MVPEETQGPSSRYTRRDHSTALRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDK 443

Query: 1228 FSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEG 1287
            FSSRHGQKG +G+   QEDMP++  GI PDII+NPH  PSRMTVG+LIE + GK     G
Sbjct: 444  FSSRHGQKGTVGMTYTQEDMPWSIEGITPDIIVNPHAIPSRMTVGQLIECIMGKVAAHVG 503

Query: 1288 NYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMV 1347
               + T F    L ++ + L + GY  +G +  Y+G TG  L + I+ GP YYQ+LKHMV
Sbjct: 504  KKGDATPFTDVTLDNISKALHKCGYQMRGFETMYNGHTGRQLTSMIFLGPTYYQRLKHMV 563

Query: 1348 QDKIHARSRGPRVVLTRQPTGRR 1370
             DKIH+R RGP  +LTRQP   R
Sbjct: 564  DDKIHSRGRGPVQILTRQPAEGR 586



 Score =  100 bits (249), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 57/141 (40%), Positives = 78/141 (55%), Gaps = 24/141 (17%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVS-----ESGIRPG-----VTTHLEIAPFTLLGVCA 741
           + D + +G IEY+D  E   + I+++      S + P        TH EI P  +LGVCA
Sbjct: 160 WHDLVAKGFIEYVDTEEEETTMISMTINDLVTSRVNPDEAYSETYTHCEIHPSLILGVCA 219

Query: 742 GIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYA 801
            I              +P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y 
Sbjct: 220 SI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYP 265

Query: 802 QRPMVESKTIRITNFHKLPAG 822
           Q+P+V ++ +   +F +LPAG
Sbjct: 266 QKPLVTTRAMEHLHFRQLPAG 286



 Score = 77.4 bits (189), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 40/88 (45%), Positives = 54/88 (61%), Gaps = 8/88 (9%)

Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHI 309
           K++ PR L  S WGM+CP++TPEG+ACGLVKNLALM +IT  +    +L+ +     E  
Sbjct: 1   KLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEFL-----EEW 55

Query: 310 AMFNGEELSS---PGVYLVFVNGILAGI 334
           +  N EE+S    P    +FVNG   GI
Sbjct: 56  STENFEEISPAVIPQATKIFVNGCWVGI 83


>gi|55583698|gb|AAV53368.1| RNA polymerase II second largest subunit [Pleurotus ostreatus]
          Length = 645

 Score =  213 bits (542), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 313  IIPFPDHNQSPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKF 372

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 373  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSVDRGLFRSMYYRSYMDLEKKSGIQQLEEF 432

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 433  EKPSRDNTLRMKHGTYDKLEDDGLIAPGTGVDGEDIIIGKTAPIPPDSEELGQRTRTHTR 492

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +   ++++VL+++N E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 493  RDVSTPLKSTENGFVDQVLITTNHEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 552

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 553  RQEDMPFTCEGIVPDIIINPHAI 575



 Score =  140 bits (352), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 79/219 (36%), Positives = 117/219 (53%), Gaps = 11/219 (5%)

Query: 1124 LRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESGICPDIIMNPHGLKG 1175
            L +  +P   +    +HG        G+I  G  V+ ED+   ++   P    +   L  
Sbjct: 429  LEEFEKPSRDNTLRMKHGTYDKLEDDGLIAPGTGVDGEDIIIGKTAPIPP---DSEELGQ 485

Query: 1176 CDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1235
              R    ++V    K +   ++++VL+++N E    +K+ +R TR P+IGDKF+SRHGQK
Sbjct: 486  RTRTHTRRDVSTPLKSTENGFVDQVLITTNHEGQKFVKIRVRSTRIPQIGDKFASRHGQK 545

Query: 1236 GVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAF 1295
            G IG+   QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F
Sbjct: 546  GTIGITYRQEDMPFTCEGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPF 605

Query: 1296 GGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIY 1334
                +  V   L + GY  +G ++ Y G TG  L+A +Y
Sbjct: 606  TDLTVESVSAFLRQKGYQSRGLEVMYHGHTGRKLQAQVY 644



 Score =  110 bits (276), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 91/151 (60%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 7   EFNLTLAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT 66

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM+ I+  +    +++ +  
Sbjct: 67  PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISGGSISAPVIEFLEE 126

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E +        SS     VFVNG+  G+
Sbjct: 127 WGLESL---EENAHSSIPCTKVFVNGVWMGV 154



 Score = 88.2 bits (217), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 47/121 (38%), Positives = 65/121 (53%), Gaps = 14/121 (11%)

Query: 706 VNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQ 765
           VN+G     A  ++       TH EI P  +LG+CA I              +P+P HNQ
Sbjct: 276 VNDGEYDPAARLKASTHAHTWTHCEIHPSMILGICASI--------------IPFPDHNQ 321

Query: 766 APRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQ 825
           +PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  
Sbjct: 322 SPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNA 381

Query: 826 I 826
           I
Sbjct: 382 I 382


>gi|443919777|gb|ELU39849.1| DNA-directed RNA polymerase II [Rhizoctonia solani AG-1 IA]
          Length = 1179

 Score =  213 bits (542), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 104/263 (39%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DT+   L Y Q+P+  ++++    F
Sbjct: 782  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNYQIRMDTMANILYYPQKPLATTRSMEYLKF 841

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+      +  
Sbjct: 842  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSMYYRSYMDIEKKAGVLNLEEF 901

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS-AISMATPEY-- 1090
              P  +   R     +  L+ DG +APG  +    +++ K+ P  + S  +   T  +  
Sbjct: 902  EKPTRDTTLRMKHGTYDKLEADGFIAPGTGVTGEDIIIGKTAPLQADSEELGQRTRSHTK 961

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++N E    +K+ +R TR P+ GDKF+SRHGQKG IG+  
Sbjct: 962  RDVSTPLKSTENGIVDQVLITTNHEGHKFVKVRVRSTRVPQTGDKFASRHGQKGTIGITY 1021

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PD+I+NPH +
Sbjct: 1022 RQEDMPFTAEGITPDLIINPHAI 1044



 Score =  187 bits (475), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 88/188 (46%), Positives = 122/188 (64%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++N E    +K+ +R TR P+ GDKF+SRHGQKG IG+  
Sbjct: 962  RDVSTPLKSTENGIVDQVLITTNHEGHKFVKVRVRSTRVPQTGDKFASRHGQKGTIGITY 1021

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PD+I+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 1022 RQEDMPFTAEGITPDLIINPHAIPSRMTIGHLVECLLSKVATLLGNEGDATPFTELTVDS 1081

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
            V + L + GY  +G ++ Y G TG+ L+A +Y GP YYQ+LKHMV DKIH+R+RGP  +L
Sbjct: 1082 VSQLLQQKGYQSRGLEVMYHGHTGKKLQAQVYFGPTYYQRLKHMVDDKIHSRARGPVQIL 1141

Query: 1363 TRQPTGRR 1370
            TRQP   R
Sbjct: 1142 TRQPVEGR 1149



 Score =  108 bits (270), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 92/151 (60%), Gaps = 2/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F +   ++ +TITN L  ++ TGNW  ++  M  + GV+QVL+R ++ S L  + R N+
Sbjct: 470 EFQLRLAVKANTITNGLKYSLATGNWGDQKKSMSAKAGVSQVLNRYTFASTLSHLRRCNT 529

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNL+LM+ I+  +    +++ +  
Sbjct: 530 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSCISVGSLSGPVIEFLEE 589

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E +   N    +S     VFVNG+  GI
Sbjct: 590 WGLESLEE-NVATGNSASATKVFVNGVWLGI 619



 Score = 90.1 bits (222), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 44/100 (44%), Positives = 59/100 (59%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 766 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYLTN 811

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
            Q R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 812 YQIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAI 851



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 47/81 (58%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A++ L    + HI +       KA +   MI R++LA  D   LDDRD++G KRL+LAG 
Sbjct: 388 AQEILQKEMLPHISMAEGSETKKAFFFGYMIHRLLLAALDRRELDDRDHFGKKRLDLAGP 447

Query: 516 LLSLMFEDVFKRFNSELKETN 536
           LL+ +F  +F++   +  E+N
Sbjct: 448 LLASLFRMLFRKLTKDCVESN 468



 Score = 43.5 bits (101), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 29/44 (65%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSD 157
           D W ++ SF  EKGLV+  +DSFD F+   +++L+  +A++  D
Sbjct: 75  DCWTIITSFFDEKGLVRQQLDSFDEFVQNTMQELVDESADLILD 118


>gi|341859164|gb|AEK97492.1| ribosomal polymerase II second largest subunit [Isaria farinosa]
          Length = 703

 Score =  213 bits (542), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 103/264 (39%), Positives = 163/264 (61%), Gaps = 5/264 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 362  IIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSMEFLKF 421

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L +R+     K+      +  
Sbjct: 422  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYSDQEKKVGLNYTEIF 481

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATP----E 1089
              P  ++  R     +  LD+DGIVAPG ++    +++ K+ P I      + T     +
Sbjct: 482  EKPFHQSTLRMKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAP-IDPETQDLGTRTTAHQ 540

Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             +++    + +    +++V+V+ N+++   +K+ +R T+ P+IGDKF+SRHGQKG IG+ 
Sbjct: 541  RRDISTPLRSTENGIVDQVIVTVNADNVKYVKVRVRTTKIPQIGDKFASRHGQKGTIGVT 600

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
              QEDMPF   G+ PDII+NPH +
Sbjct: 601  YRQEDMPFTREGVTPDIIINPHAI 624



 Score =  149 bits (377), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 68/162 (41%), Positives = 104/162 (64%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            +++    + +    +++V+V+ N+++   +K+ +R T+ P+IGDKF+SRHGQKG IG+  
Sbjct: 542  RDISTPLRSTENGIVDQVIVTVNADNVKYVKVRVRTTKIPQIGDKFASRHGQKGTIGVTY 601

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   G+ PDII+NPH  PSRMT+  LIE L  K   +EG   + T F    +  
Sbjct: 602  RQEDMPFTREGVTPDIIINPHAIPSRMTIAHLIECLLSKVSTLEGMEGDATPFTDVTVDS 661

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLK 1344
            V + L +HGY  +G +I Y+G TG+ L A ++ GP YYQ+L+
Sbjct: 662  VSDLLRKHGYQSRGFEIMYNGHTGKKLRAQVFFGPTYYQRLR 703



 Score =  111 bits (278), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 91/151 (60%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMER-QGVTQVLSRLSYISGLGMMTRINS 243
            F++   ++  T++N L  ++ TGNW  ++  M    GV+QVL+R ++ S L  + R N+
Sbjct: 40  HFNLAVGIKPGTLSNGLKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNT 99

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNL+LM +++  +  + ++  M N
Sbjct: 100 PIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSPAEPLIDFMIN 159

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E I  +  E L  P    +FVNG   G+
Sbjct: 160 RGMEVIEEY--EPLRYPHATKIFVNGTWVGV 188



 Score = 89.4 bits (220), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 346 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGFFLTN 391

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 392 YSRRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 431


>gi|55831371|gb|AAV66544.1| RNA polymerase II second largest subunit [Hygrocybe aff. conica PBM
            918]
          Length = 686

 Score =  213 bits (542), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 107/263 (40%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++ +    F
Sbjct: 359  IIPFPDHNQSPRNTYQSAMGKQAMGIHLTNFLIRMDTMANILYYPQKPLATTRAMEYLRF 418

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR    + K+   Q  +  
Sbjct: 419  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSMYYRCYMDLEKKNGVQQLEEF 478

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS-AISMATPEY-- 1090
              P  E   R     +  L+ DG++APG  +    +++ K+ P    S  +   T  +  
Sbjct: 479  EKPTRENTLRMKHGTYDKLEDDGLIAPGTGVAGEDIIIGKTAPIPPDSEELGQRTRSHTR 538

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++N+E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 539  RDVSTPLKSTENGIVDQVLITTNAEGHKFVKIRVRATRVPQIGDKFASRHGQKGTIGITY 598

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 599  RQEDMPFTAEGIVPDIIINPHAI 621



 Score =  134 bits (336), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 64/148 (43%), Positives = 91/148 (61%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++N+E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 539  RDVSTPLKSTENGIVDQVLITTNAEGHKFVKIRVRATRVPQIGDKFASRHGQKGTIGITY 598

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 599  RQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTELTVES 658

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALE 1330
            V   L + GY  +G ++ Y G TG  L+
Sbjct: 659  VSTFLRQKGYQSRGLEVMYHGHTGRKLQ 686



 Score =  112 bits (281), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/190 (33%), Positives = 103/190 (54%), Gaps = 18/190 (9%)

Query: 186 FDIVNHMRQDTITNALTAAIQTGNWTIRRFKM-ERQGVTQVLSRLSYISGLGMMTRINSQ 244
           F++   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+ 
Sbjct: 44  FNVALAVKHQTITNGLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTP 103

Query: 245 FEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNI 304
             +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM  I+  +    +++ +   
Sbjct: 104 LGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMACISVGSQSAAVIEFLEEW 163

Query: 305 GIEHIAMFNGEELSSPGVYLVFVNGILAGITCHHKEVC-----------KPEIEESFNYT 353
           G+E  ++      ++P    VFVNG+  G+   H++             K +IE   +  
Sbjct: 164 GLE--SLEENAHSATPCTK-VFVNGVWMGV---HRDAANLVKTIKKLRRKRDIESEVSVV 217

Query: 354 RQTTPHECRL 363
           R     E RL
Sbjct: 218 RDIRERELRL 227



 Score = 88.6 bits (218), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/121 (39%), Positives = 65/121 (53%), Gaps = 14/121 (11%)

Query: 706 VNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQ 765
            N+G+       ++GI     TH EI P  +LGVCA I              +P+P HNQ
Sbjct: 322 ANDGDFDPAVRLKAGINSHTWTHCEIHPSMILGVCASI--------------IPFPDHNQ 367

Query: 766 APRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQ 825
           +PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++ +    F +LPAG+  
Sbjct: 368 SPRNTYQSAMGKQAMGIHLTNFLIRMDTMANILYYPQKPLATTRAMEYLRFRELPAGQNA 427

Query: 826 I 826
           I
Sbjct: 428 I 428


>gi|6606133|gb|AAF19079.1|AF107807_1 DNA-dependent RNA polymerase II RPB140, partial [Leotia viscosa]
          Length = 938

 Score =  213 bits (542), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 106/286 (37%), Positives = 168/286 (58%), Gaps = 3/286 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 563  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDQRMDTMANILYYPQKPLATTRSMEYLKF 622

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R L +R+     K+      ++ 
Sbjct: 623  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYTDQEKRIGMNVVEQF 682

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAISMATPEY-- 1090
              P      +     +  LD DG+VAPG ++    +++ K+ P       +   T  +  
Sbjct: 683  EKPFRNDTLKLKHGTYDKLDDDGLVAPGVRVSGEDIIIGKTAPIAPDNEELGQRTKAHSK 742

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++     + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHGQKG IG+  
Sbjct: 743  RDASTPLRSTENGIVDQVLITTNAEGLRFVKVRMRTTKVPQIGDKFASRHGQKGTIGITY 802

Query: 1151 EQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSY 1196
            +QEDMPF   GI PD+I+NPH +     I    E  +S   S+  Y
Sbjct: 803  KQEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQLSKVASLSGY 848



 Score =  183 bits (465), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 99/259 (38%), Positives = 146/259 (56%), Gaps = 13/259 (5%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESG-ICPDIIMNPHGL 1173
            ++ Q  +P   D    +HG        G++  G+ V  ED+   ++  I PD       L
Sbjct: 678  VVEQFEKPFRNDTLKLKHGTYDKLDDDGLVAPGVRVSGEDIIIGKTAPIAPD----NEEL 733

Query: 1174 KGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
                +    ++     + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHG
Sbjct: 734  GQRTKAHSKRDASTPLRSTENGIVDQVLITTNAEGLRFVKVRMRTTKVPQIGDKFASRHG 793

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGT 1293
            QKG IG+  +QEDMPF   GI PD+I+NPH  PSRMT+  LIE    K   + G   + T
Sbjct: 794  QKGTIGITYKQEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQLSKVASLSGYEGDAT 853

Query: 1294 AFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHA 1353
             F    + +V + L  HGY  +G +I Y G TG  L A ++ GP YYQ+L+HMV DKIHA
Sbjct: 854  PFTDVTVDNVSKLLREHGYQSRGFEIMYHGHTGRKLTAQVFLGPTYYQRLRHMVDDKIHA 913

Query: 1354 RSRGPRVVLTRQPTGRRWK 1372
            R+RGP  +LTRQP   R +
Sbjct: 914  RARGPVQILTRQPVEGRAR 932



 Score =  108 bits (271), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 88/151 (58%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F+    ++  T+T  L  ++ TGNW   ++      GV+QVL+R ++ S L  + R N+
Sbjct: 238 EFNPALGIKSTTLTAGLKYSLATGNWGDQKKAASSTAGVSQVLNRYTFASTLSHLRRTNT 297

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM ++T       +++ M  
Sbjct: 298 PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYVTVGTPSDPIVEFMIQ 357

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
             +E +  +  E L SP    VFVNG+  G+
Sbjct: 358 RSMEVLEEY--EPLRSPNATKVFVNGVWVGV 386



 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 81/176 (46%), Gaps = 44/176 (25%)

Query: 681 LNMHQFLGFKRFDDFLYEGKIEYLDVNEGNDSHIAVS----------------------- 717
           L   Q  G+  F   + EG +EY+D  E     I ++                       
Sbjct: 471 LEEKQERGYFGFQGLIDEGVVEYVDAEEEETVMIVMTPEDLEISRQLQAGYQIQEDNSGE 530

Query: 718 -----ESGIRPG--VTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNT 770
                ++ ++P   + TH EI P  +LG+CA I              +P+P HNQ+PRNT
Sbjct: 531 LNRRVKAPMKPTAHIWTHCEIHPSMILGICASI--------------IPFPDHNQSPRNT 576

Query: 771 YQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
           YQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 577 YQSAMGKQAMGVFLTNFDQRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAI 632



 Score = 54.7 bits (130), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 42/77 (54%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           ARD +    + HI         KA +L  M+ +++         DDRD++G KRL+LAG 
Sbjct: 149 ARDIMQKELLPHISQKEGSETRKAFFLGYMVHKLLQCALGRRETDDRDHFGKKRLDLAGP 208

Query: 516 LLSLMFEDVFKRFNSEL 532
           LL+ +F ++FK+   +L
Sbjct: 209 LLAKLFRNLFKKLTQDL 225


>gi|56694314|gb|AAW22897.1| RNA polymerase II second largest subunit [Ceratozamia miqueliana]
          Length = 552

 Score =  213 bits (542), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 109/261 (41%), Positives = 159/261 (60%), Gaps = 1/261 (0%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y  +P+V ++ +   +F
Sbjct: 210  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYXXKPLVTTRAMEHLHF 269

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S DRGF R L YR+ +   K+      +  
Sbjct: 270  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSXDRGFFRSLFYRSYRDEEKRMGTLVKEEF 329

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMP-TISVSAISMATPEYKE 1092
              P  E  T      +  LD DG+  PG ++    V++ K+ P T   S    A    ++
Sbjct: 330  GRPNRENTTGMRHGSYXKLDDDGLAPPGTRVSGEDVIIGKTTPVTQDESGGQAARYTKRD 389

Query: 1093 VPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQ 1152
               S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   Q
Sbjct: 390  QSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYCQ 449

Query: 1153 EDMPFNESGICPDIIMNPHGL 1173
            EDMP+   GI PDII+NPH +
Sbjct: 450  EDMPWTVEGITPDIIVNPHAI 470



 Score =  150 bits (380), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 71/165 (43%), Positives = 104/165 (63%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++   S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+  
Sbjct: 388  RDQSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTY 447

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMP+   GI PDII+NPH  P RMT+G+LIE + GK     G   + T F    + +
Sbjct: 448  CQEDMPWTVEGITPDIIVNPHAIPXRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDN 507

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMV 1347
            + + L + GY  +G +  Y+G TG  L A I+ GP YYQ+LKHMV
Sbjct: 508  ISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMV 552



 Score = 97.1 bits (240), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 56/142 (39%), Positives = 78/142 (54%), Gaps = 25/142 (17%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGI------RPGVT-----THLEIAPFTLLGVC 740
           + + + +G IEY+D  E   + I+++ S +       P  T     TH EI P  +LGVC
Sbjct: 148 WHELVTKGFIEYVDTEEEETTMISMTISDLVNARNSPPTATSIVKYTHCEIHPSLILGVC 207

Query: 741 AGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVY 800
           A I              +P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y
Sbjct: 208 ASI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYY 253

Query: 801 AQRPMVESKTIRITNFHKLPAG 822
             +P+V ++ +   +F +LPAG
Sbjct: 254 XXKPLVTTRAMEHLHFRQLPAG 275



 Score = 49.3 bits (116), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 38/67 (56%), Gaps = 8/67 (11%)

Query: 271 PEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMFNGEELSS---PGVYLVFV 327
           PEG+ACGLVKNLALM +IT  +    +L+ +     E  +  N EE+S    P    +FV
Sbjct: 1   PEGQACGLVKNLALMVYITVGSAANPILEFL-----EEWSTENFEEISPAVIPNATKIFV 55

Query: 328 NGILAGI 334
           NG   GI
Sbjct: 56  NGCWVGI 62


>gi|392580422|gb|EIW73549.1| hypothetical protein TREMEDRAFT_70991 [Tremella mesenterica DSM 1558]
          Length = 1214

 Score =  213 bits (542), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 110/268 (41%), Positives = 163/268 (60%), Gaps = 10/268 (3%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DT+   L Y Q+P+  ++++    F
Sbjct: 746  IIPFPDHNQSPRNTYQSAMGKQAMGVHLTNYQLRMDTMANILYYPQKPLATTRSMEYLKF 805

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+M YSGY+ ED++IMN++S+DRG  R L YR+     K    +  + I
Sbjct: 806  SELPAGQNAIVAIMCYSGYNQEDSVIMNQSSIDRGLFRSLYYRSYTDAEKMTGMEKVETI 865

Query: 1034 LGPLLEADTRKPV---YRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSA-----ISM 1085
              P  +   R  +    R+  LD DG++AP   +    +++ K+ P    S       S+
Sbjct: 866  EKPDRKDTLRMKMGSSDRYAKLDIDGLIAPATNVNGDDIIIGKTAPIPEESEELGQRTSL 925

Query: 1086 ATPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV 1145
             T   ++V    K +    +++V++S+N +    +K+ +R TR P+IGDKF+SRHGQKG 
Sbjct: 926  HTK--RDVSTPLKSTEQGVVDQVMLSTNGDGHKFVKIRIRSTRVPQIGDKFASRHGQKGT 983

Query: 1146 IGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            IG+   QEDMPF   GI PDII+NPH +
Sbjct: 984  IGITYRQEDMPFTAEGITPDIIINPHAI 1011



 Score =  189 bits (481), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 91/188 (48%), Positives = 122/188 (64%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++V++S+N +    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 929  RDVSTPLKSTEQGVVDQVMLSTNGDGHKFVKIRIRSTRVPQIGDKFASRHGQKGTIGITY 988

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   M G+  + T F    +  
Sbjct: 989  RQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLSKLSTMTGSEGDATPFTELTVEK 1048

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
            V + L + GY  +G ++ Y G TG  L+A IY GP YYQ+LKHMV DKIHAR+RGP  +L
Sbjct: 1049 VSKFLRQRGYQSRGLEVMYHGHTGRKLQAQIYFGPTYYQRLKHMVDDKIHARARGPLQIL 1108

Query: 1363 TRQPTGRR 1370
            TRQP   R
Sbjct: 1109 TRQPVEGR 1116



 Score =  110 bits (275), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 55/138 (39%), Positives = 83/138 (60%), Gaps = 6/138 (4%)

Query: 197 ITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVSGPRS 256
           IT+    AI TGNW     +  R GV+QVL+R +Y S L  + R N+  ++  K + PR 
Sbjct: 446 ITDGFRYAIATGNWGTGTNR--RVGVSQVLNRYTYASTLSHLRRTNTPIDRGSKATKPRQ 503

Query: 257 LQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMFNGEE 316
           L  + WGM+CP++TPEG ACGLVKNLAL+++I+  +    +++ +   G+E  + F    
Sbjct: 504 LHNTHWGMVCPAETPEGAACGLVKNLALLSYISVGSYAAPVMEFLEEWGLEDQSEFQ--- 560

Query: 317 LSSPGVYLVFVNGILAGI 334
             +PG   VFVNG+  G+
Sbjct: 561 -HNPGATKVFVNGVWMGV 577



 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/100 (44%), Positives = 59/100 (59%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH+EI P  +LGVC  I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 730 THMEIHPSMILGVCGSI--------------IPFPDHNQSPRNTYQSAMGKQAMGVHLTN 775

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
            Q R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 776 YQLRMDTMANILYYPQKPLATTRSMEYLKFSELPAGQNAI 815



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 42/77 (54%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A D L    + H+ V       KA +L  MI R+  A  +   LDDRD++GNKR++LAG 
Sbjct: 345 AFDILQKEFLPHVSVSEGFESKKAYFLGYMIHRLCSAALNRRDLDDRDHFGNKRMDLAGP 404

Query: 516 LLSLMFEDVFKRFNSEL 532
           LL+ +F  +FK     +
Sbjct: 405 LLANLFRGLFKNLTKRV 421



 Score = 41.6 bits (96), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 22/90 (24%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEY---------------------- 378
           + +P   ES        P E RLR+LTYSAP+ V+IE                       
Sbjct: 87  LARPTTTESDGIAAPMFPQEARLRNLTYSAPLYVEIERRTFVAAGADEDPLDTEWQPLLD 146

Query: 379 TRGSQRVVRSDLVIGRMPIMLQSSKCVLRN 408
             G   V ++   IG++P+M++S  C L N
Sbjct: 147 AYGEPVVEKTKAFIGKVPVMVRSHFCHLEN 176


>gi|15669230|ref|NP_248035.1| DNA-directed RNA polymerase subunit B' [Methanocaldococcus jannaschii
            DSM 2661]
 gi|2500640|sp|Q60181.1|RPOB1_METJA RecName: Full=DNA-directed RNA polymerase subunit B'
 gi|1591694|gb|AAB99044.1| DNA-directed RNA polymerase, subunit B' (rpoB1) [Methanocaldococcus
            jannaschii DSM 2661]
          Length = 636

 Score =  213 bits (542), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 111/264 (42%), Positives = 159/264 (60%), Gaps = 3/264 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            G+ PYP HN APR T   AMGKQ++G    N + R+DT  + L Y Q P+V +K   I  
Sbjct: 142  GVAPYPEHNSAPRITMAAAMGKQSLGIPMSNIKWRLDTRGHYLHYPQVPIVRTKHQEILG 201

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F K PAGQN  +A+MSY GY++EDA++ NK+++DRG GR   +R      ++YP    DR
Sbjct: 202  FDKRPAGQNFVVAIMSYEGYNMEDAIVFNKSAIDRGLGRSTFFRTYDACERRYPGGQMDR 261

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPT--ISVSAISM-ATPE 1089
               P       +    +R L++DGIVA    +    V+V K+ P   +    I++   P+
Sbjct: 262  FEIPDKGVRGYRSEECYRYLEEDGIVAVESHVKGGDVIVGKTSPPRFLEEHEITIQVKPQ 321

Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             ++  V  +     Y++KV+++   E   L+K+ +R  R PE+GDKF+SRHGQKGV+GL 
Sbjct: 322  RRDSSVVVRHGEEGYIDKVILTETKEGNRLVKVKVRDLRIPELGDKFASRHGQKGVMGLT 381

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
            V QED+PF ESGI PDII+NPH +
Sbjct: 382  VPQEDLPFTESGIVPDIIINPHAI 405



 Score =  203 bits (516), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 98/178 (55%), Positives = 126/178 (70%)

Query: 1195 SYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGI 1254
             Y++KV+++   E   L+K+ +R  R PE+GDKF+SRHGQKGV+GL V QED+PF ESGI
Sbjct: 335  GYIDKVILTETKEGNRLVKVKVRDLRIPELGDKFASRHGQKGVMGLTVPQEDLPFTESGI 394

Query: 1255 CPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNY 1314
             PDII+NPH  PSRMTVG+L+E+L GK G +EG   +GT F G K  D+++ L   G+ +
Sbjct: 395  VPDIIINPHAIPSRMTVGQLLEMLGGKVGALEGRRIDGTIFSGEKEWDLRKALEALGFKH 454

Query: 1315 QGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
             GK++ Y G TG+  E  IY G  YYQKL H+V  KIHARSRGP  VLTRQPT  R +
Sbjct: 455  HGKEVMYDGKTGKKFEVEIYIGIAYYQKLHHLVAGKIHARSRGPVQVLTRQPTEGRAR 512



 Score = 97.4 bits (241), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 56/132 (42%), Positives = 73/132 (55%), Gaps = 15/132 (11%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKR 751
           F D + EG IEYLD  E  +++IA+SE  +     THLEI P T+LG+ AG+        
Sbjct: 93  FSDLVKEGVIEYLDAEEEENAYIALSEEELTEK-HTHLEIDPLTILGIGAGV-------- 143

Query: 752 FHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTI 811
                  PYP HN APR T   AMGKQ++G    N + R+DT  + L Y Q P+V +K  
Sbjct: 144 ------APYPEHNSAPRITMAAAMGKQSLGIPMSNIKWRLDTRGHYLHYPQVPIVRTKHQ 197

Query: 812 RITNFHKLPAGK 823
            I  F K PAG+
Sbjct: 198 EILGFDKRPAGQ 209


>gi|367479107|gb|AEX16088.1| RPB2 [Mucor circinelloides f. lusitanicus]
          Length = 931

 Score =  213 bits (542), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 100/263 (38%), Positives = 160/263 (60%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL   L Y Q+P+  ++++    F
Sbjct: 549  IIPFPDHNQSPRNTYQSAMGKQAMGVYLTNFQTRMDTLANILYYPQKPLTTTRSMEFLRF 608

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R L +R      K+      +  
Sbjct: 609  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSLFFRTYMDAEKKAGMMFMEEF 668

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  L++DG++APG ++    +++ K+ P  + S        T   
Sbjct: 669  EKPTRDTTLRLKHGTYEKLEEDGLIAPGTRVSGDDIIIGKTAPIPADSEELGQRTTTHNK 728

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++     + +    +++V++++N +    +K+ +R TR P++GDKF+SRHGQKG IG+  
Sbjct: 729  RDASTPLRSTETGIVDQVMLTTNQDGLKFVKVRVRSTRVPQMGDKFASRHGQKGTIGMTY 788

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QED PF+  GI PD+I+NPH +
Sbjct: 789  RQEDFPFSAEGITPDLIINPHAI 811



 Score =  183 bits (465), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 81/174 (46%), Positives = 116/174 (66%)

Query: 1197 LEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICP 1256
            +++V++++N +    +K+ +R TR P++GDKF+SRHGQKG IG+   QED PF+  GI P
Sbjct: 743  VDQVMLTTNQDGLKFVKVRVRSTRVPQMGDKFASRHGQKGTIGMTYRQEDFPFSAEGITP 802

Query: 1257 DIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQG 1316
            D+I+NPH  PSRMT+G +IE L GK   + GN  + T F    +  + + L   GY  +G
Sbjct: 803  DLIINPHAIPSRMTIGHMIECLLGKVSTLTGNEGDATPFTDVTVEAISQALQAQGYQSRG 862

Query: 1317 KDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRR 1370
             ++ Y+G TG  L   ++ GP YYQ+LKHMV DKIH+R+RGP  +LTRQP   R
Sbjct: 863  FEVMYNGFTGRKLNVQVFLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGR 916



 Score =  121 bits (304), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/179 (38%), Positives = 111/179 (62%), Gaps = 10/179 (5%)

Query: 161 LFYLKYLDIHVGIADKIIPKIKAA-QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME- 218
           LF L +  +   +A  +   I+++ +F++   ++ +TITN L  ++ TGNW  ++  M+ 
Sbjct: 221 LFRLLFKKLTKDVAKYLQKCIESSREFNLTLAVKSNTITNGLKYSLATGNWGDQKKAMQS 280

Query: 219 RQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGL 278
           R GV+QVL+R +Y S L  + R N+   +  K++ PR L  + WG++CP++TPEG+ACGL
Sbjct: 281 RAGVSQVLNRYTYTSTLSHLRRCNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGL 340

Query: 279 VKNLALMTHITTENDEKNMLKIMYNIGIEHIAMFNGEELSSPGVY---LVFVNGILAGI 334
           VKNLALM++I+  +    +  IM+   +E  AM N EELS+  +     VFVNG+  GI
Sbjct: 341 VKNLALMSYISVGSSATPL--IMF---LEEWAMENLEELSATSIADATKVFVNGVWIGI 394



 Score = 94.4 bits (233), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 60/193 (31%), Positives = 86/193 (44%), Gaps = 57/193 (29%)

Query: 677 RPTFLNMHQFLGFKR--------------FDDFLYEGKIEYLDVNEGNDSHIAV------ 716
           RP FL  +Q L   R              + + + +G +EY+D +E   + I +      
Sbjct: 440 RPLFLVENQQLKLTRDHVLRIQDTEDDYGWQNMIADGIVEYVDADEEETAMICMTPEDLA 499

Query: 717 -----------------------SESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFH 753
                                  S++G      TH EI P  +LG+CA I          
Sbjct: 500 ESRMTAEYGAPLQETRDLFSRVKSQTGSYSHTWTHCEIHPSMILGICASI---------- 549

Query: 754 SPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRI 813
               +P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL   L Y Q+P+  ++++  
Sbjct: 550 ----IPFPDHNQSPRNTYQSAMGKQAMGVYLTNFQTRMDTLANILYYPQKPLTTTRSMEF 605

Query: 814 TNFHKLPAGKCQI 826
             F +LPAG+  I
Sbjct: 606 LRFRELPAGQNAI 618



 Score = 55.1 bits (131), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 14/114 (12%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A + L    + H+         K+ +   MI R++LA  +   LDDRD+YG KR++LAG 
Sbjct: 157 ASEILQKELLPHVGTAYKTETRKSYFFGYMIHRLLLAALERRELDDRDHYGKKRMDLAGP 216

Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYGN 555
           L++ +F  +FK+   ++           +E NL+  V    + +G  + L  GN
Sbjct: 217 LMASLFRLLFKKLTKDVAKYLQKCIESSREFNLTLAVKSNTITNGLKYSLATGN 270


>gi|410610275|gb|AFV74906.1| RNA polymerase II second largest subunit, partial [Thesium chinense]
          Length = 566

 Score =  213 bits (542), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 109/270 (40%), Positives = 167/270 (61%), Gaps = 19/270 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 196  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 255

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L +R+ +           ++ 
Sbjct: 256  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR---------DEEKK 306

Query: 1034 LGPLLEADTRKPV------YRHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            +G L++ D  +P        RH +   LD DG+  PG ++    V++ K+ P     +  
Sbjct: 307  MGTLVKEDFGRPNRMDTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIAQDESQG 366

Query: 1085 MATPEYK-EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1143
             ++   K +   S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQK
Sbjct: 367  QSSRYTKRDHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQK 426

Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G +G+   QEDMP+   GI PDII+NPH +
Sbjct: 427  GTVGMTYTQEDMPWTVEGITPDIIVNPHAI 456



 Score =  180 bits (456), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 86/184 (46%), Positives = 119/184 (64%)

Query: 1187 VSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQED 1246
             S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   QED
Sbjct: 378  TSLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 437

Query: 1247 MPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEE 1306
            MP+   GI PDII+NPH  PSRMT+G+LIE + GK     G   + T F    + ++ + 
Sbjct: 438  MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 497

Query: 1307 LIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQP 1366
            L + GY  +G +  Y+G TG  L A I+ GP YYQ+LKHMV DKIH+R RGP  +LTRQP
Sbjct: 498  LHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP 557

Query: 1367 TGRR 1370
               R
Sbjct: 558  AEGR 561



 Score = 99.4 bits (246), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/141 (39%), Positives = 77/141 (54%), Gaps = 24/141 (17%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPG----------VTTHLEIAPFTLLGVCA 741
           + D + +G IEY+D  E   + I+++ + +               TH EI P  +LGVCA
Sbjct: 135 WHDLVAKGFIEYIDTEEEETTMISMTINDLVSARLNPEEAYSEAYTHCEIHPSLILGVCA 194

Query: 742 GIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYA 801
            I              +P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y 
Sbjct: 195 SI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYP 240

Query: 802 QRPMVESKTIRITNFHKLPAG 822
           Q+P+V ++ +   +F +LPAG
Sbjct: 241 QKPLVTTRAMEHLHFRQLPAG 261



 Score = 42.0 bits (97), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 34/63 (53%), Gaps = 8/63 (12%)

Query: 275 ACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMFNGEELSS---PGVYLVFVNGIL 331
           ACGLVKNLALM +IT  +    +L+ +   G E     N EE+S    P    +FVNG  
Sbjct: 1   ACGLVKNLALMVYITVGSAAYPILEFLEEWGTE-----NFEEISPAVIPQATKIFVNGCW 55

Query: 332 AGI 334
            GI
Sbjct: 56  VGI 58


>gi|46277285|gb|AAS86833.1| RNA polymerase II second largest subunit, partial [Rhododendron
            macrophyllum]
          Length = 549

 Score =  213 bits (542), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 110/270 (40%), Positives = 166/270 (61%), Gaps = 19/270 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 202  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 261

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L +R+ +           ++ 
Sbjct: 262  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR---------DEEKK 312

Query: 1034 LGPLLEADTRKPV------YRHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            +G L++ D  +P        RH +   LD DG+  PG ++    V++ K+ P     A  
Sbjct: 313  MGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVVIGKTTPIAQDEAQG 372

Query: 1085 MATP-EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1143
             A     ++   S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQK
Sbjct: 373  PAARYTRRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQK 432

Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G +G+   QEDMP+   GI PDII+NPH +
Sbjct: 433  GTVGMTYTQEDMPWTMEGITPDIIVNPHAI 462



 Score =  152 bits (384), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 74/166 (44%), Positives = 103/166 (62%)

Query: 1187 VSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQED 1246
             S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   QED
Sbjct: 384  TSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 443

Query: 1247 MPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEE 1306
            MP+   GI PDII+NPH  PSRMT+G+LIE + GK     G   + T F    + ++ + 
Sbjct: 444  MPWTMEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 503

Query: 1307 LIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIH 1352
            L + GY   G      G TG  L + I+ GP YYQ+LKHMV DKIH
Sbjct: 504  LHKCGYQCVGSRPCTBGHTGRRLTSMIFLGPTYYQRLKHMVDDKIH 549



 Score =  100 bits (249), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 63/172 (36%), Positives = 85/172 (49%), Gaps = 40/172 (23%)

Query: 677 RPTFLNMHQFLGFKRFD----------------DFLYEGKIEYLDVNEGNDSHIAVSESG 720
           RP F+   Q L  KR D                D + +G IEY+D  E   + I+++ + 
Sbjct: 110 RPLFIVEKQRLLIKRKDIQALQQRETPEDGGWHDLVAKGFIEYIDTEEEETTMISMTIND 169

Query: 721 IRPG----------VTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNT 770
           +               TH EI P  +LGVCA I              +P+P HNQ+PRNT
Sbjct: 170 LVSARLNPEEAYSETYTHCEIHPSLILGVCASI--------------IPFPDHNQSPRNT 215

Query: 771 YQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAG 822
           YQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F +LPAG
Sbjct: 216 YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG 267



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 40/69 (57%), Gaps = 8/69 (11%)

Query: 269 DTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMFNGEELSS---PGVYLV 325
           +TPEG+ACGLVKNLALM +IT  +    +L+ +   G E     N EE+S    P    +
Sbjct: 1   ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTE-----NFEEISPAVIPQATKI 55

Query: 326 FVNGILAGI 334
           FVNG   GI
Sbjct: 56  FVNGCWVGI 64


>gi|119644183|gb|ABL85611.1| RNA polymerase II second largest subunit [Phaeophyscia orbicularis]
          Length = 718

 Score =  213 bits (542), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 106/265 (40%), Positives = 165/265 (62%), Gaps = 7/265 (2%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R++T+ + L Y Q+P+  ++++    F
Sbjct: 370  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDQRMETMSHILYYPQKPLATTRSMEYLKF 429

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR+     K+      ++ 
Sbjct: 430  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRVGTNVLEQF 489

Query: 1034 LGPLLEADTRKPVY-RHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT----P 1088
              P + ADT K  +  +  LD DGI+ PG ++    V++ K+ P IS  A  +       
Sbjct: 490  EKP-MRADTLKLKHGTYDKLDDDGIIIPGARVSGDDVIIGKTAP-ISPDAEELGQRTKLH 547

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
              ++     + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHGQKG IG+
Sbjct: 548  TKRDASTPLRSTESGLVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGI 607

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
               QEDMPF   G+ PD+I+NPH +
Sbjct: 608  TYRQEDMPFTSEGLVPDLIINPHAI 632



 Score =  157 bits (396), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 86/238 (36%), Positives = 129/238 (54%), Gaps = 13/238 (5%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESG-ICPDIIMNPHGL 1173
            +L Q  +P   D    +HG        G+I  G  V  +D+   ++  I PD       L
Sbjct: 485  VLEQFEKPMRADTLKLKHGTYDKLDDDGIIIPGARVSGDDVIIGKTAPISPDA----EEL 540

Query: 1174 KGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
                ++   ++     + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHG
Sbjct: 541  GQRTKLHTKRDASTPLRSTESGLVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHG 600

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGT 1293
            QKG IG+   QEDMPF   G+ PD+I+NPH  PSRMT+  LIE    K   + G   + T
Sbjct: 601  QKGTIGITYRQEDMPFTSEGLVPDLIINPHAIPSRMTIAHLIECQLSKVASLRGLEGDAT 660

Query: 1294 AFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKI 1351
             F    +  V   L  HGY  +G ++ Y+G TG  L A ++ GP YYQ+L+HMV DKI
Sbjct: 661  PFTEITVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKI 718



 Score =  112 bits (279), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 55/168 (32%), Positives = 94/168 (55%), Gaps = 15/168 (8%)

Query: 192 MRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRK 250
           ++  T+TN L  ++ TGNW   ++    + GV+QVL+R ++ S L  + R N+   +  K
Sbjct: 53  VKSSTLTNGLKYSLATGNWGEQKKAASSKAGVSQVLNRFTFASTLSHLRRTNTPIGRDGK 112

Query: 251 VSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIA 310
           ++ PR L  + WG++CP++TPEG+ACGLVKNLALM H++     + ++  +    +E + 
Sbjct: 113 IAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCHVSVGTPSEGIVPFLLQRQMESLE 172

Query: 311 MFNGEELSSPGVYLVFVNGILAGI------------TCHHKEVCKPEI 346
            +  E  +SP    +FVNG+  G+            +   K V +PE+
Sbjct: 173 EY--EPHASPNATKIFVNGVWVGVHRNPAHLVTAVQSLRRKHVLEPEV 218



 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/100 (42%), Positives = 59/100 (59%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 354 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 399

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R++T+ + L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 400 YDQRMETMSHILYYPQKPLATTRSMEYLKFRELPAGQNAI 439


>gi|56694334|gb|AAW22907.1| RNA polymerase II second largest subunit [Araucaria araucana]
          Length = 523

 Score =  213 bits (542), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 108/270 (40%), Positives = 167/270 (61%), Gaps = 19/270 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 176  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYXLYYPQKPLVTTRAMEHLHF 235

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L +R+ +           ++ 
Sbjct: 236  RQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR---------DEEKR 286

Query: 1034 LGPLLEADTRKPV------YRHRA---LDQDGIVAPGEQICERQVLVNKSMP-TISVSAI 1083
            +G L++ +  +P        RH +   LD+DG+  PG ++    V++ K+ P T      
Sbjct: 287  MGTLVKEEFGRPNRENTXGXRHGSXDKLDEDGLAPPGTRVSGEDVIIGKTTPITQDEQGG 346

Query: 1084 SMATPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1143
             ++    ++   S + S    +++VL+++N +    +K+ +R  R P+IGDKFSSRHGQK
Sbjct: 347  QLSRFSRRDQSTSLRHSESGMVDQVLLTTNQDGLRFVKIRMRSVRIPQIGDKFSSRHGQK 406

Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G +G+   QEDMP+   GI PDII+NPH +
Sbjct: 407  GTVGMTYTQEDMPWTVEGITPDIIVNPHAI 436



 Score =  160 bits (406), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 76/170 (44%), Positives = 107/170 (62%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++   S + S    +++VL+++N +    +K+ +R  R P+IGDKFSSRHGQKG +G+  
Sbjct: 354  RDQSTSLRHSESGMVDQVLLTTNQDGLRFVKIRMRSVRIPQIGDKFSSRHGQKGTVGMTY 413

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMP+   GI PDII+NPH  PSRMT+G+LIE + GK     G   + T F    +  
Sbjct: 414  TQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDS 473

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIH 1352
            + + L + GY  +G +  Y+G TG  L A I+ GP YYQ+LKHMV DKIH
Sbjct: 474  ISKALHKCGYQMRGFETMYNGHTGRKLSAMIFLGPTYYQRLKHMVDDKIH 523



 Score =  101 bits (251), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 62/169 (36%), Positives = 87/169 (51%), Gaps = 37/169 (21%)

Query: 677 RPTFLNMHQFLGFKRFD-------------DFLYEGKIEYLDVNEGNDSHIAVSESGIRP 723
           RP F+  +Q L  K+ D             + + +G IEY+D  E   + I+++ + +  
Sbjct: 87  RPLFVVENQRLKIKKKDINELRQNPEEGWHELVNKGFIEYVDTEEEEXTMISMTINDLVN 146

Query: 724 GVT----------THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQC 773
             T          TH EI P  +LGVCA I              +P+P HNQ+PRNTYQ 
Sbjct: 147 ARTNPEDAYSHTYTHCEIHPSLILGVCASI--------------IPFPDHNQSPRNTYQS 192

Query: 774 AMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAG 822
           AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F +LPAG
Sbjct: 193 AMGKQAMGIYVTNYQLRMDTLAYXLYYPQKPLVTTRAMEHLHFRQLPAG 241


>gi|83415495|gb|ABC17955.1| RNA polymerase II second largest subunit precursor, partial
            [Spiromyces aspiralis]
          Length = 1058

 Score =  213 bits (542), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 104/263 (39%), Positives = 164/263 (62%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG +  N Q R+DTL   L Y Q+P+  ++ +    F
Sbjct: 348  IIPFPDHNQSPRNTYQSAMGKQAMGVMLTNYQLRMDTLSNVLYYPQKPLAITRAMDYLKF 407

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R L +R  +    +  +    R 
Sbjct: 408  RQLPAGQNAIVAILCYSGYNQEDSIIMNQSSIDRGLFRSLFFRTYQDEENREGSAHVGRF 467

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS-AISMATPEYKE 1092
              P  E   R     +  LD+DG+VAPG ++    +++ K+ P  + S  +   T  + +
Sbjct: 468  EKPTRETTLRLKHGTYEKLDEDGLVAPGTRVVGDDIIIGKTTPIPADSLELGQRTKNHTK 527

Query: 1093 VPVS--YKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            +  S   + +    +++V++++N++    +K+ +R TR P+IGDKF+SRHGQKG +G+  
Sbjct: 528  LDASKPLRSTEHGIVDRVMLTTNADGIRFVKVRVRSTRVPQIGDKFASRHGQKGTVGMTY 587

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
              EDMPF   GI PD+I+NPH +
Sbjct: 588  RTEDMPFTAEGIVPDLIINPHAI 610



 Score =  157 bits (397), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 75/176 (42%), Positives = 109/176 (61%), Gaps = 5/176 (2%)

Query: 1197 LEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICP 1256
            +++V++++N++    +K+ +R TR P+IGDKF+SRHGQKG +G+    EDMPF   GI P
Sbjct: 542  VDRVMLTTNADGIRFVKVRVRSTRVPQIGDKFASRHGQKGTVGMTYRTEDMPFTAEGIVP 601

Query: 1257 DIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQG 1316
            D+I+NPH  PSRMT+G LIE L  K   + G   + T F    +  +  EL   GY+ +G
Sbjct: 602  DLIINPHAIPSRMTIGHLIECLLSKLSTLLGQDGDATPFTDVTVEAISRELHSRGYHPRG 661

Query: 1317 KDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
             ++ Y+G TG  L A ++ GP Y Q+LKHMV DKIH  +    V+     T R W+
Sbjct: 662  FEVMYNGHTGRKLAAQVFLGPTYXQRLKHMVDDKIHCLTPDHEVL-----TERGWR 712



 Score =  111 bits (278), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 61/156 (39%), Positives = 92/156 (58%), Gaps = 12/156 (7%)

Query: 192 MRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINSQFEKTRK 250
           ++  TIT  L  ++ TGNW  ++  M+ R GV+QVL+R ++ S L  + R N+   +  K
Sbjct: 46  IKSTTITTGLKYSLATGNWGDQKKAMQSRAGVSQVLNRYTFASTLSHLRRCNTPIGRDGK 105

Query: 251 VSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIA 310
           ++ PR L  + WG++CP++TPEG+ACGLVKNLALM H+T     + +   + + G+E   
Sbjct: 106 IAKPRQLHNTHWGIVCPAETPEGQACGLVKNLALMAHVTISCSAQPIHDFLNDWGME--- 162

Query: 311 MFNGEEL---SSPGVYLVFVNGILAGITCHHKEVCK 343
             N EEL   S      +FVNG+  GI   H+E  K
Sbjct: 163 --NLEELQVTSIADATKIFVNGVWLGI---HREANK 193



 Score = 91.3 bits (225), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 77/161 (47%), Gaps = 43/161 (26%)

Query: 695 FLYEGKIEYLDVNEGNDSHIAVS-----------ESGIRP------------------GV 725
            + +G +EYLD  E   + I ++           ++G+ P                    
Sbjct: 271 LISDGVVEYLDAEEEETAMICMTPDELRESYEYHQTGVEPPMEVDPSFRIRSRRNIYINT 330

Query: 726 TTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGY 785
            TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG +  
Sbjct: 331 WTHCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVMLT 376

Query: 786 NQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
           N Q R+DTL   L Y Q+P+  ++ +    F +LPAG+  I
Sbjct: 377 NYQLRMDTLSNVLYYPQKPLAITRAMDYLKFRQLPAGQNAI 417


>gi|341859160|gb|AEK97490.1| ribosomal polymerase II second largest subunit [Cordyceps cicadae]
          Length = 704

 Score =  213 bits (542), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 103/264 (39%), Positives = 163/264 (61%), Gaps = 5/264 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 363  IIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSMEFLKF 422

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L +R+     K+      +  
Sbjct: 423  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYSDQEKKVGLNYTEIF 482

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATP----E 1089
              P  ++  R     +  LD+DGIVAPG ++    +++ K+ P I      + T     +
Sbjct: 483  EKPFHQSTLRMKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAP-IDPETQDLGTRTTAHQ 541

Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             +++    + +    +++V+V+ N+++   +K+ +R T+ P+IGDKF+SRHGQKG IG+ 
Sbjct: 542  RRDISTPLRSTENGIVDQVIVTVNADNVKYVKVRVRTTKIPQIGDKFASRHGQKGTIGVT 601

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
              QEDMPF   G+ PDII+NPH +
Sbjct: 602  YRQEDMPFTREGVTPDIIINPHAI 625



 Score =  150 bits (378), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 68/162 (41%), Positives = 104/162 (64%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            +++    + +    +++V+V+ N+++   +K+ +R T+ P+IGDKF+SRHGQKG IG+  
Sbjct: 543  RDISTPLRSTENGIVDQVIVTVNADNVKYVKVRVRTTKIPQIGDKFASRHGQKGTIGVTY 602

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   G+ PDII+NPH  PSRMT+  LIE L  K   +EG   + T F    +  
Sbjct: 603  RQEDMPFTREGVTPDIIINPHAIPSRMTIAHLIECLLSKVSTLEGMEGDATPFTDVTVDS 662

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLK 1344
            V + L +HGY  +G +I Y+G TG+ L A ++ GP YYQ+L+
Sbjct: 663  VSDLLRKHGYQSRGFEIMYNGHTGKKLRAQVFFGPTYYQRLR 704



 Score =  111 bits (278), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 57/173 (32%), Positives = 101/173 (58%), Gaps = 7/173 (4%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMER-QGVTQVLSRLSYISGLGMMTRINS 243
            F++   ++  T++N L  ++ TGNW  ++  M    GV+QVL+R ++ S L  + R N+
Sbjct: 40  HFNLAVGIKPGTLSNGLKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNT 99

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNL+LM +++  +  + ++  M N
Sbjct: 100 PIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSPAEPLIDFMIN 159

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQT 356
            G+E I  +  E L  P    +FVNG   G+    K +    +++ F+  R++
Sbjct: 160 RGMEVIEEY--EPLRYPHATKIFVNGTWVGVHQDPKHL----VDQVFDTRRKS 206



 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 347 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGFFLTN 392

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 393 YSRRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 432


>gi|354992145|gb|AER45779.1| RNA polymerase II second largest subunit [Pleurotus ostreatus]
          Length = 687

 Score =  213 bits (542), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 160/263 (60%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 345  IIPFPDHNQSPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKF 404

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 405  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSVDRGLFRSMYYRSYMDLEKKSGIQQLEEF 464

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 465  EKPSRDNTLRMKHGTYDKLENDGLIAPGTGVVGEDIIIGKTAPIPPDSEELGQRTRTHTR 524

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++N E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 525  RDVSTPLKSTENGIVDQVLITTNHEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 584

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 585  RQEDMPFTCEGIVPDIIINPHAI 607



 Score =  156 bits (394), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 75/168 (44%), Positives = 103/168 (61%)

Query: 1178 RITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV 1237
            R    ++V    K +    +++VL+++N E    +K+ +R TR P+IGDKF+SRHGQKG 
Sbjct: 520  RTHTRRDVSTPLKSTENGIVDQVLITTNHEGQKFVKIRVRSTRIPQIGDKFASRHGQKGT 579

Query: 1238 IGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGG 1297
            IG+   QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F  
Sbjct: 580  IGITYRQEDMPFTCEGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTD 639

Query: 1298 TKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKH 1345
              +  V   L + GY  +G ++ Y G TG  L+A +Y GP YYQ+LKH
Sbjct: 640  LTVESVSAFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKH 687



 Score =  111 bits (277), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 58/153 (37%), Positives = 93/153 (60%), Gaps = 8/153 (5%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 39  EFNLTLAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT 98

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM+ I+  +    +++ +  
Sbjct: 99  PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSISAPVIEFLEE 158

Query: 304 IGIEHIAMFNGEELSSPGV--YLVFVNGILAGI 334
            G+E +     EE +   V    VFVNG+  G+
Sbjct: 159 WGLESL-----EENAHSSVPRTKVFVNGVWMGV 186



 Score = 88.6 bits (218), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/121 (38%), Positives = 65/121 (53%), Gaps = 14/121 (11%)

Query: 706 VNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQ 765
           VN+G     A  ++       TH EI P  +LG+CA I              +P+P HNQ
Sbjct: 308 VNDGEYDPAARLKASTHAHTWTHCEIHPSMILGICASI--------------IPFPDHNQ 353

Query: 766 APRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQ 825
           +PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  
Sbjct: 354 SPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNA 413

Query: 826 I 826
           I
Sbjct: 414 I 414


>gi|113957206|gb|ABI49109.1| RNA polymerase II second largest subunit [Pyxine subcinerea]
          Length = 709

 Score =  213 bits (541), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 110/288 (38%), Positives = 171/288 (59%), Gaps = 7/288 (2%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ  MGKQAMG    N   R++T+ + L Y Q+P+  ++++    F
Sbjct: 361  IIPFPDHNQSPRNTYQSXMGKQAMGVFLTNFDQRMETMSHILYYPQKPLATTRSMEFLKF 420

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR+     K+    T ++ 
Sbjct: 421  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKKIGMYTMEQF 480

Query: 1034 LGPLLEADTRKPVY-RHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT----P 1088
              P L +DT K  +  +  LD DGI+ PG ++    +++ K+ P I+  A  +       
Sbjct: 481  EKP-LRSDTLKLKHGTYEKLDDDGIIIPGARVSGEDIIIGKTAP-IAPDAEELGQRTKLH 538

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
              ++     + +    +++VL++ NSE    +K+ +R T+ P+IGDKF+SRHGQKG IG+
Sbjct: 539  NKRDASTPLRSTESGLVDQVLLTVNSEGLRFVKVRMRTTKVPQIGDKFASRHGQKGTIGI 598

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSY 1196
               QEDMPF   G+ PD+I+NPH +     I    E  +S   S+  Y
Sbjct: 599  TYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGY 646



 Score =  158 bits (400), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 87/237 (36%), Positives = 127/237 (53%), Gaps = 13/237 (5%)

Query: 1124 LRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESG-ICPDIIMNPHGLK 1174
            + Q  +P   D    +HG        G+I  G  V  ED+   ++  I PD       L 
Sbjct: 477  MEQFEKPLRSDTLKLKHGTYEKLDDDGIIIPGARVSGEDIIIGKTAPIAPD----AEELG 532

Query: 1175 GCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQ 1234
               ++   ++     + +    +++VL++ NSE    +K+ +R T+ P+IGDKF+SRHGQ
Sbjct: 533  QRTKLHNKRDASTPLRSTESGLVDQVLLTVNSEGLRFVKVRMRTTKVPQIGDKFASRHGQ 592

Query: 1235 KGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTA 1294
            KG IG+   QEDMPF   G+ PD+I+NPH  PSRMT+  LIE    K   + G   + T 
Sbjct: 593  KGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGYEGDATP 652

Query: 1295 FGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKI 1351
            F    +  V   L  HGY  +G ++ Y+G TG  L A ++ GP YYQ+L+HMV DKI
Sbjct: 653  FTDVTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKI 709



 Score =  114 bits (284), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 53/151 (35%), Positives = 94/151 (62%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW   ++    + GV+QVL+R ++ S L  + R N+
Sbjct: 37  EFNLTLGVKSTTITNGLKYSLATGNWGEQKKASSSKAGVSQVLNRFTFASTLSHLRRTNT 96

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM +++     + +++ + +
Sbjct: 97  PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYVSVGTPSEGIVEFLLS 156

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
             +E +  +  + L+SP    +FVNG+  GI
Sbjct: 157 RQMEPLEEY--DPLASPHATKIFVNGVWVGI 185



 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/100 (41%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ  MGKQAMG    N
Sbjct: 345 THCEIHPSMILGLCASI--------------IPFPDHNQSPRNTYQSXMGKQAMGVFLTN 390

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R++T+ + L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 391 FDQRMETMSHILYYPQKPLATTRSMEFLKFRELPAGQNAI 430


>gi|119644196|gb|ABL85612.1| RNA polymerase II second largest subunit [Physconia muscigena]
          Length = 718

 Score =  213 bits (541), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 103/265 (38%), Positives = 166/265 (62%), Gaps = 7/265 (2%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R++T+ + L Y Q+P+  ++++    F
Sbjct: 370  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDQRMETMSHILYYPQKPLATTRSMEYLKF 429

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR+     K+      ++ 
Sbjct: 430  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGTNVLEKF 489

Query: 1034 LGPLLEADTRKPVY-RHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATP---- 1088
              P + +DT K  +  +  LD+DG++ PG ++    +++ K+ P I+  A  M       
Sbjct: 490  EKP-MRSDTLKLKHGTYDKLDEDGLIIPGARVSGEDIIIGKTAP-IAPDAEEMGQRTKLH 547

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
              ++     + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHGQKG IG+
Sbjct: 548  TKRDASTPLRSTESGLVDQVLLTTNAEGLRFVKVRMRTTKVPQIGDKFASRHGQKGTIGI 607

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
               QEDMPF   G+ PD+I+NPH +
Sbjct: 608  TYRQEDMPFTSEGVVPDLIINPHAI 632



 Score =  157 bits (396), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 85/238 (35%), Positives = 130/238 (54%), Gaps = 13/238 (5%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESG-ICPDIIMNPHGL 1173
            +L +  +P   D    +HG      + G+I  G  V  ED+   ++  I PD       +
Sbjct: 485  VLEKFEKPMRSDTLKLKHGTYDKLDEDGLIIPGARVSGEDIIIGKTAPIAPDA----EEM 540

Query: 1174 KGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
                ++   ++     + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHG
Sbjct: 541  GQRTKLHTKRDASTPLRSTESGLVDQVLLTTNAEGLRFVKVRMRTTKVPQIGDKFASRHG 600

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGT 1293
            QKG IG+   QEDMPF   G+ PD+I+NPH  PSRMT+  LIE    K   + G   + T
Sbjct: 601  QKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDAT 660

Query: 1294 AFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKI 1351
             F    +  V   L  HGY  +G ++ Y+G TG  L A ++ GP YYQ+L+HMV DKI
Sbjct: 661  PFTEVTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKI 718



 Score =  113 bits (283), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 93/168 (55%), Gaps = 15/168 (8%)

Query: 192 MRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRK 250
           ++  T+TN L  ++ TGNW   ++    + GV+QVL+R ++ S L  + R N+   +  K
Sbjct: 53  IKSSTLTNGLKYSLATGNWGEQKKAASSKAGVSQVLNRFTFASTLSHLRRTNTPIGRDGK 112

Query: 251 VSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIA 310
           ++ PR L  + WG++CP++TPEG+ACGLVKNLALM H++       ++  +    +E + 
Sbjct: 113 IAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCHVSVGTPSDGIVPFLLQRQMESLE 172

Query: 311 MFNGEELSSPGVYLVFVNGILAGI------------TCHHKEVCKPEI 346
            +  E  +SP    +FVNG+  G+            T   K V +PE+
Sbjct: 173 EY--EPHTSPNATKIFVNGVWVGVHRNPVHLVNAVQTLRRKHVLEPEV 218



 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/100 (42%), Positives = 59/100 (59%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 354 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 399

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R++T+ + L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 400 YDQRMETMSHILYYPQKPLATTRSMEYLKFRELPAGQNAI 439


>gi|109289351|gb|ABG29164.1| RNA polymerase II second largest subunit, partial [Entyloma
            arnoseridis]
          Length = 695

 Score =  213 bits (541), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 105/263 (39%), Positives = 159/263 (60%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DT+   L Y Q+P+  ++ ++   F
Sbjct: 351  IIPFPDHNQSPRNTYQSAMGKQAMGVYLTNYQMRMDTMANILYYPQKPLGTTRAMQHLKF 410

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R L YR    + K+      +  
Sbjct: 411  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSLYYRTYTDLEKKSGMVEMEVF 470

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  E   R     +  LD DG+ APG ++    +++ K++P    S    +       
Sbjct: 471  EKPSRETTIRLKHGTYDKLDADGLCAPGTRVSGEDIIIGKTVPLPCDSEELGLRSKLHTK 530

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++  +  K +    +++VLV++N +    +K+ +R TR P+ GDKF+SRHGQKG IG+  
Sbjct: 531  RDASMPLKSTESGIVDQVLVTTNGDGVKFVKVRVRSTRVPQTGDKFASRHGQKGTIGITY 590

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   G+ PDII+NPH +
Sbjct: 591  RQEDMPFTVEGVTPDIIINPHAI 613



 Score =  155 bits (393), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 73/165 (44%), Positives = 102/165 (61%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++  +  K +    +++VLV++N +    +K+ +R TR P+ GDKF+SRHGQKG IG+  
Sbjct: 531  RDASMPLKSTESGIVDQVLVTTNGDGVKFVKVRVRSTRVPQTGDKFASRHGQKGTIGITY 590

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   G+ PDII+NPH  PSRMT+G L+E L  K   + G   + T F    +  
Sbjct: 591  RQEDMPFTVEGVTPDIIINPHAIPSRMTIGHLVECLLSKVATLSGQEGDATPFTSLTVEA 650

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMV 1347
            V   L   GY  +G +I Y+G TG  L+A +Y GP YYQ+LKHMV
Sbjct: 651  VSNVLKGFGYQSRGLEIMYNGHTGRKLQAQVYLGPTYYQRLKHMV 695



 Score =  112 bits (280), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 55/150 (36%), Positives = 91/150 (60%), Gaps = 4/150 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F I   ++  TITN L  ++ TGNW   ++F   + GV+QVL+R ++ S L  + R N+
Sbjct: 43  EFFINTAVKSATITNGLKYSLATGNWGDQKKFMQAKAGVSQVLNRYTFASTLSHLRRCNT 102

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNL+LM+ I+  +  + +++ +  
Sbjct: 103 PIGRDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSLISVGSQSQPIIEFLEE 162

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAG 333
            G++ +     E+  S     VFVNG+  G
Sbjct: 163 FGLDQLTDMRREDARSTK---VFVNGVWLG 189



 Score = 88.6 bits (218), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/100 (44%), Positives = 59/100 (59%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 335 THCEIHPAMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVYLTN 380

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
            Q R+DT+   L Y Q+P+  ++ ++   F +LPAG+  I
Sbjct: 381 YQMRMDTMANILYYPQKPLGTTRAMQHLKFRELPAGQNAI 420


>gi|46277271|gb|AAS86826.1| RNA polymerase II second largest subunit, partial [Antirrhinum majus]
          Length = 575

 Score =  213 bits (541), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 111/270 (41%), Positives = 165/270 (61%), Gaps = 19/270 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 202  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 261

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L +R+ +           ++ 
Sbjct: 262  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR---------DEEKK 312

Query: 1034 LGPLLEADTRKPV------YRHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            +G L++ D  +P        RH +   LD DG+  PG +     V++ K+ P     A  
Sbjct: 313  MGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRCSGEDVIIGKTTPISPDDAQG 372

Query: 1085 MATPEYK-EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1143
             A    K +   S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQK
Sbjct: 373  QAARYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQK 432

Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G +G+   QEDMP+   GI PDII+NPH +
Sbjct: 433  GTVGMTYTQEDMPWTVEGISPDIIVNPHAI 462



 Score =  179 bits (453), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 85/184 (46%), Positives = 119/184 (64%)

Query: 1187 VSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQED 1246
             S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   QED
Sbjct: 384  TSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 443

Query: 1247 MPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEE 1306
            MP+   GI PDII+NPH  PSRMT+G+LIE + GK     G   + T F    + ++ + 
Sbjct: 444  MPWTVEGISPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 503

Query: 1307 LIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQP 1366
            L + GY  +G +  Y+G TG  L + I+ GP YYQ+LKHMV DKIH+R RGP  +LTRQP
Sbjct: 504  LHKCGYQMRGFETMYNGHTGRRLSSMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP 563

Query: 1367 TGRR 1370
               R
Sbjct: 564  AEGR 567



 Score = 98.6 bits (244), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/141 (39%), Positives = 78/141 (55%), Gaps = 24/141 (17%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVS-----ESGIRP-----GVTTHLEIAPFTLLGVCA 741
           + + + +G IEY+D  E   + I+++      + + P        TH EI P  +LGVCA
Sbjct: 141 WHELVAKGFIEYIDTEEEETTMISMTINDLLSAKVNPTEAYSDTYTHCEIHPSLILGVCA 200

Query: 742 GIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYA 801
            I              +P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y 
Sbjct: 201 SI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYP 246

Query: 802 QRPMVESKTIRITNFHKLPAG 822
           Q+P+V ++ +   +F +LPAG
Sbjct: 247 QKPLVTTRAMEHLHFRQLPAG 267



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 41/69 (59%), Gaps = 8/69 (11%)

Query: 269 DTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMFNGEELSS---PGVYLV 325
           +TPEG+ACGLVKNLALM +IT  +    +L+ +   G E     N EE+S    P    +
Sbjct: 1   ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTE-----NFEEISPAVIPQATKI 55

Query: 326 FVNGILAGI 334
           FVNG+  GI
Sbjct: 56  FVNGLWVGI 64


>gi|88976165|gb|ABD59040.1| RNA polymerase II second largest subunit, partial [Megacollybia
            platyphylla]
          Length = 558

 Score =  213 bits (541), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 159/263 (60%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 225  IIPFPDHNQSPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKF 284

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+      +  
Sbjct: 285  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIAQLEEF 344

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  LD DG++APG  +    +++ K+ P    S        T   
Sbjct: 345  EKPSRQNTLRMKHGTYDKLDDDGLIAPGTGVVGEDIIIGKTAPIPPDSEELGQRTRTHTR 404

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ +R  R P+IGDKF+SRHGQKG IG+  
Sbjct: 405  RDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSIRIPQIGDKFASRHGQKGTIGITY 464

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 465  RQEDMPFTAEGIVPDIIINPHAI 487



 Score =  138 bits (348), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 67/154 (43%), Positives = 93/154 (60%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++NSE    +K+ +R  R P+IGDKF+SRHGQKG IG+  
Sbjct: 405  RDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSIRIPQIGDKFASRHGQKGTIGITY 464

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 465  RQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVES 524

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSG 1336
            V   L   GY  +G ++ Y G TG  L+A +Y G
Sbjct: 525  VSSYLRTKGYQSRGLEVMYHGHTGRKLQAQVYLG 558



 Score = 91.3 bits (225), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 48/121 (39%), Positives = 66/121 (54%), Gaps = 14/121 (11%)

Query: 706 VNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQ 765
            N+G     A  ++GI     TH EI P  +LG+CA I              +P+P HNQ
Sbjct: 188 ANDGEFDPAARLKAGINAHTWTHCEIHPSMILGICASI--------------IPFPDHNQ 233

Query: 766 APRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQ 825
           +PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  
Sbjct: 234 SPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNA 293

Query: 826 I 826
           I
Sbjct: 294 I 294



 Score = 54.7 bits (130), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 6/71 (8%)

Query: 265 LCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMFNGEELSSPGVYL 324
           +CP++TPEG+ACGLVKNLALM  I+  +    +++ +   G+E +     EE ++  V  
Sbjct: 1   VCPAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEEWGLESL-----EENANTAVST 55

Query: 325 -VFVNGILAGI 334
            VFVNG+  G+
Sbjct: 56  KVFVNGVWMGV 66


>gi|242038711|ref|XP_002466750.1| hypothetical protein SORBIDRAFT_01g013470 [Sorghum bicolor]
 gi|241920604|gb|EER93748.1| hypothetical protein SORBIDRAFT_01g013470 [Sorghum bicolor]
          Length = 1218

 Score =  213 bits (541), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 110/270 (40%), Positives = 167/270 (61%), Gaps = 19/270 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 746  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHF 805

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L +R+ +           ++ 
Sbjct: 806  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR---------DEEKK 856

Query: 1034 LGPLLEADTRKPV------YRHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            +G L++ +  +P        RH +   LD DG+  PG ++    V++ K+ P     A  
Sbjct: 857  MGTLVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIPQDDAQG 916

Query: 1085 MATPEYK-EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1143
             A+   K +   S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQK
Sbjct: 917  QASRYSKRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQK 976

Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G +G+   QEDMP+   GI PDII+NPH +
Sbjct: 977  GTVGMTYTQEDMPWTIEGITPDIIVNPHAI 1006



 Score =  180 bits (456), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 86/184 (46%), Positives = 118/184 (64%)

Query: 1187 VSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQED 1246
             S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   QED
Sbjct: 928  TSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 987

Query: 1247 MPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEE 1306
            MP+   GI PDII+NPH  PSRMT+G+LIE + GK     G   + T F    + ++ + 
Sbjct: 988  MPWTIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAQMGREGDATPFTDVTVDNISKA 1047

Query: 1307 LIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQP 1366
            L R  Y  +G +  Y+G TG  L A I+ GP YYQ+LKHMV DKIH+R RGP  +LTRQP
Sbjct: 1048 LHRCNYQMRGFETMYNGHTGRKLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP 1107

Query: 1367 TGRR 1370
               R
Sbjct: 1108 AEGR 1111



 Score =  118 bits (296), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 63/146 (43%), Positives = 87/146 (59%), Gaps = 8/146 (5%)

Query: 192 MRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKV 251
           ++  TIT+ L  ++ TGNW        R GV+QVL+RL+Y S L  + R+NS   +  K+
Sbjct: 469 IKAKTITSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKL 528

Query: 252 SGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAM 311
           + PR L  S WGM+CP++TPEG+ACGLVKNLALM +IT  +    +L+ +   G E    
Sbjct: 529 AKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWGTE---- 584

Query: 312 FNGEELSS---PGVYLVFVNGILAGI 334
            N EE+S    P    +FVNG   GI
Sbjct: 585 -NFEEISPAVIPQAAKIFVNGCWVGI 609



 Score = 99.8 bits (247), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/141 (39%), Positives = 77/141 (54%), Gaps = 24/141 (17%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPG----------VTTHLEIAPFTLLGVCA 741
           + + + +G IEY+D  E   + I+++ S +               TH EI P  +LGVCA
Sbjct: 685 WHELVSKGYIEYIDTEEEETTMISMTISDLHNARHNPEDAYSETYTHCEIHPSLILGVCA 744

Query: 742 GIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYA 801
            I              +P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y 
Sbjct: 745 SI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYP 790

Query: 802 QRPMVESKTIRITNFHKLPAG 822
           Q+P+V ++ +   +F +LPAG
Sbjct: 791 QKPLVTTRAMEHLHFRQLPAG 811



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 49/103 (47%), Gaps = 7/103 (6%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A++ L    + H+ V       KA Y   +I R+++        DDRD+YGNKRL+LAG 
Sbjct: 388 AKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLMCALGRRAEDDRDHYGNKRLDLAGP 447

Query: 516 LLSLMFEDVFKRFNSELKETNLSGVV---NLVSGWWFELKYGN 555
           LL      +F+      KE NL   +    + SG  + L  GN
Sbjct: 448 LLG----GLFRMCVDNGKEVNLQFAIKAKTITSGLKYSLATGN 486



 Score = 49.3 bits (116), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 9/80 (11%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYT-----RGSQRVVRS----DLV 391
           + KP + E+   T    P   RLR+LTYSAP+ VD+ Y         + V  +     + 
Sbjct: 139 LSKPMMTEADGETATLFPKSARLRNLTYSAPLYVDVSYRVMKKGHDCEEVTETADYPKVF 198

Query: 392 IGRMPIMLQSSKCVLRNKTE 411
           IG++PIML+SS C L  ++E
Sbjct: 199 IGKVPIMLRSSYCTLYQQSE 218



 Score = 43.1 bits (100), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 32/49 (65%)

Query: 106 LKDSPEIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANI 154
           L+D     D W ++ ++ +EKGLV+  +DSFD FI   +++++  +A+I
Sbjct: 61  LRDEIGQDDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADI 109


>gi|103001497|gb|ABF71510.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
            gobiense]
          Length = 695

 Score =  213 bits (541), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 106/264 (40%), Positives = 165/264 (62%), Gaps = 5/264 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 356  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDQRMDTMANILYYPQKPLATTRSMEFLKF 415

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+D G  R L YR+     K+      ++ 
Sbjct: 416  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDHGLFRSLFYRSYTDQEKRIGMSVVEQF 475

Query: 1034 LGPLLEADTRKPVY-RHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAISMATPEY- 1090
              P + +DT K  +  +  LD DGIVAPG ++    +++ K+ P       +   T  + 
Sbjct: 476  EKP-MRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKLHV 534

Query: 1091 -KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             ++V    + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHGQKG IG+ 
Sbjct: 535  KRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGIT 594

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
              QEDMPF + GI PD+I+NPH +
Sbjct: 595  YRQEDMPFTKEGIVPDLIINPHAI 618



 Score =  145 bits (365), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 80/229 (34%), Positives = 125/229 (54%), Gaps = 13/229 (5%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESG-ICPDIIMNPHGL 1173
            ++ Q  +P   D    +HG        G++  G+ V  ED+   ++  I PD       L
Sbjct: 471  VVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPD----AEEL 526

Query: 1174 KGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
                ++   ++V    + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHG
Sbjct: 527  GQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHG 586

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGT 1293
            QKG IG+   QEDMPF + GI PD+I+NPH  PSRMT+  LIE    K   + G   + T
Sbjct: 587  QKGTIGITYRQEDMPFTKEGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDAT 646

Query: 1294 AFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQK 1342
             F    +  V + L  HGY  +G ++ Y+G TG  L A ++ GP YYQ+
Sbjct: 647  PFTEVTVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQR 695



 Score =  114 bits (286), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 91/151 (60%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW   ++    + GV+QVL+R ++ S L  + R N+
Sbjct: 33  EFNLTLGVKSTTITNGLKYSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNT 92

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT     + +++ M  
Sbjct: 93  PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIEFMIQ 152

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
             +E +  +  E   SP    VFVNG+  G+
Sbjct: 153 RNMEVLEEY--EPQRSPNATKVFVNGVWVGV 181



 Score = 90.1 bits (222), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 340 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 385

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 386 YDQRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 425


>gi|70794966|gb|AAZ08457.1| RNA polymerase II second largest subunit [Rhododendron macrophyllum]
          Length = 1191

 Score =  213 bits (541), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 109/270 (40%), Positives = 166/270 (61%), Gaps = 19/270 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DT+ Y L Y Q+P+V ++ +   +F
Sbjct: 717  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTVAYVLYYPQKPLVTTRAMEHLHF 776

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L +R+ +           ++ 
Sbjct: 777  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR---------DEEKK 827

Query: 1034 LGPLLEADTRKPV------YRHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            +G L++ D  +P        RH +   LD DG+  PG ++    V++ K+ P     A  
Sbjct: 828  MGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVVIGKTTPIAQDEAQG 887

Query: 1085 MATP-EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1143
             A     ++   S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQK
Sbjct: 888  PAARYTRRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQK 947

Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G +G+   QEDMP+   GI PDII+NPH +
Sbjct: 948  GTVGMTYTQEDMPWTMEGITPDIIVNPHAI 977



 Score =  179 bits (454), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 85/184 (46%), Positives = 119/184 (64%)

Query: 1187 VSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQED 1246
             S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   QED
Sbjct: 899  TSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 958

Query: 1247 MPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEE 1306
            MP+   GI PDII+NPH  PSRMT+G+LIE + GK     G   + T F    + ++ + 
Sbjct: 959  MPWTMEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 1018

Query: 1307 LIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQP 1366
            L + GY  +G +  Y+G TG  L + I+ GP YYQ+LKHMV DKIH+R RGP  +LTRQP
Sbjct: 1019 LHKCGYQMRGFETMYNGHTGRRLTSMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP 1078

Query: 1367 TGRR 1370
               R
Sbjct: 1079 AEGR 1082



 Score =  120 bits (300), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 64/146 (43%), Positives = 88/146 (60%), Gaps = 8/146 (5%)

Query: 192 MRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKV 251
           ++  TIT+ L  ++ TGNW        R GV+QVL+RL+Y S L  + R+NS   +  K+
Sbjct: 439 IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKL 498

Query: 252 SGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAM 311
           + PR L  SQWGM+CP++TPEG+ACGLVKNLALM +IT  +    +L+ +   G E    
Sbjct: 499 AKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTE---- 554

Query: 312 FNGEELSS---PGVYLVFVNGILAGI 334
            N EE+S    P    +FVNG   GI
Sbjct: 555 -NFEEISPAVIPQATKIFVNGCWVGI 579



 Score =  100 bits (248), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 62/172 (36%), Positives = 85/172 (49%), Gaps = 40/172 (23%)

Query: 677 RPTFLNMHQFLGFKRFD----------------DFLYEGKIEYLDVNEGNDSHIAVSESG 720
           RP F+   Q L  KR D                D + +G IEY+D  E   + I+++ + 
Sbjct: 625 RPLFIVEKQRLLIKRKDIQALQQRETPEDGGWHDLVAKGFIEYIDTEEEETTMISMTIND 684

Query: 721 IRPG----------VTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNT 770
           +               TH EI P  +LGVCA I              +P+P HNQ+PRNT
Sbjct: 685 LVSARLNPEEAYSETYTHCEIHPSLILGVCASI--------------IPFPDHNQSPRNT 730

Query: 771 YQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAG 822
           YQ AMGKQAMG    N Q R+DT+ Y L Y Q+P+V ++ +   +F +LPAG
Sbjct: 731 YQSAMGKQAMGIYVTNYQFRMDTVAYVLYYPQKPLVTTRAMEHLHFRQLPAG 782



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 57/121 (47%), Gaps = 14/121 (11%)

Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
           K+  +  A++ L    + H+ V       KA Y   +I R++L        DDRD+YGNK
Sbjct: 336 KEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNK 395

Query: 509 RLELAGSLLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYG 554
           RL+LAG LL  +F  +F++   ++           K+ NL   +    + SG  + L  G
Sbjct: 396 RLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATG 455

Query: 555 N 555
           N
Sbjct: 456 N 456



 Score = 49.3 bits (116), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 19/85 (22%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVR------------- 387
           + KP + ES   T    P   RLR+LTYSAP+ VD+     ++RV++             
Sbjct: 94  LSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV-----TKRVIKKGHDGEEVTETQD 148

Query: 388 -SDLVIGRMPIMLQSSKCVLRNKTE 411
            + + IG++PIML+SS C L   +E
Sbjct: 149 FTKVFIGKVPIMLRSSYCTLYQNSE 173


>gi|86559351|gb|ABD04083.1| RNA polymerase II second largest subunit, partial [Botryobasidium
            subcoronatum]
          Length = 677

 Score =  213 bits (541), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 104/262 (39%), Positives = 160/262 (61%), Gaps = 2/262 (0%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DT+   L Y Q+P+  ++++    F
Sbjct: 348  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNYQVRMDTMANILYYPQKPLATTRSMEYLKF 407

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+     K+      +  
Sbjct: 408  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSMYYRSHMDSEKKVGVLPVEEF 467

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKS--MPTISVSAISMATPEYK 1091
              P  +   R     +  LD DG++ PG  +    V++ K+  +P  S       +   +
Sbjct: 468  EKPTPDTTLRMKRGTYDKLDDDGLIPPGTGVNGEDVIIGKTAPLPPDSEELGQRKSHTRR 527

Query: 1092 EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVE 1151
            +   + K +    +++VLV++N++    +K+ +R TR P++GDKF+SRHGQKG IG+   
Sbjct: 528  DASTALKSTENGIIDQVLVTTNADGLKFVKIRVRSTRIPQVGDKFASRHGQKGTIGITYR 587

Query: 1152 QEDMPFNESGICPDIIMNPHGL 1173
            QEDMPF   GI PDII+NPH +
Sbjct: 588  QEDMPFTAEGITPDIIINPHAI 609



 Score =  134 bits (337), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 63/151 (41%), Positives = 93/151 (61%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++   + K +    +++VLV++N++    +K+ +R TR P++GDKF+SRHGQKG IG+  
Sbjct: 527  RDASTALKSTENGIIDQVLVTTNADGLKFVKIRVRSTRIPQVGDKFASRHGQKGTIGITY 586

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 587  RQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLSKLATLIGNEGDATPFTELTVES 646

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYI 1333
            V + L   GY  +G ++ Y G TG  L+A +
Sbjct: 647  VSKLLRERGYQSRGLEVMYHGHTGRKLQAQV 677



 Score =  108 bits (269), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 56/152 (36%), Positives = 92/152 (60%), Gaps = 6/152 (3%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++ +TITN L  ++ TGNW  ++  M  + GV+QVL+R ++ S L  + R N+
Sbjct: 39  EFNLNVAVKHNTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTFASTLSHLRRCNT 98

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNL+LM  I+  +    +++ +  
Sbjct: 99  PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMACISVGSLSAPVIEFLQE 158

Query: 304 IGIEHIAMFNGEELSSPG-VYLVFVNGILAGI 334
            G+E +     E  +  G    VFVNG+  GI
Sbjct: 159 WGLEGLE----ENATHQGNATKVFVNGVWMGI 186



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/100 (44%), Positives = 59/100 (59%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 332 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYLTN 377

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
            Q R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 378 YQVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAI 417


>gi|52699898|gb|AAU87010.1| DNA-dependent RNA polymerase II second largest subunit [Thamnolia
            subuliformis]
          Length = 716

 Score =  213 bits (541), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 112/287 (39%), Positives = 169/287 (58%), Gaps = 5/287 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 366  IIPFPDHNQSPRNTYQSAMGKQAMGXXXTNFDERMDTMTNILYYPQKPLATTRSMEFLKF 425

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR      K+      +  
Sbjct: 426  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRVYTDQEKRVGMSVVEMF 485

Query: 1034 LGPLLEADTRKPVY-RHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAISMATPEY- 1090
              P + +DT K  +  +  LD DG+VAPG ++    +++ K+ P       +   T  + 
Sbjct: 486  EKP-MRSDTLKLKHGTYDKLDDDGLVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKLHI 544

Query: 1091 -KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             ++V    + +    ++KVL+++N E    +K+ +R T+ P+IGDKF+SRHGQKG IG+ 
Sbjct: 545  KRDVSTPLRSTENGLVDKVLLTTNHEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGIT 604

Query: 1150 VEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSY 1196
              QEDMPF   GI PD+I+NPH +     I    E  +S   S+  Y
Sbjct: 605  YRQEDMPFTSEGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGY 651



 Score =  153 bits (387), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 86/234 (36%), Positives = 126/234 (53%), Gaps = 13/234 (5%)

Query: 1129 RPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESG-ICPDIIMNPHGLKGCDRI 1179
            +P   D    +HG        G++  G+ V  ED+   ++  I PD       L    ++
Sbjct: 487  KPMRSDTLKLKHGTYDKLDDDGLVAPGVRVSGEDIIIGKTAPIAPDA----EELGQRTKL 542

Query: 1180 TEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1239
               ++V    + +    ++KVL+++N E    +K+ +R T+ P+IGDKF+SRHGQKG IG
Sbjct: 543  HIKRDVSTPLRSTENGLVDKVLLTTNHEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIG 602

Query: 1240 LIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTK 1299
            +   QEDMPF   GI PD+I+NPH  PSRMT+  LIE    K   + G   + T F    
Sbjct: 603  ITYRQEDMPFTSEGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGYEGDATPFTEVT 662

Query: 1300 LVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHA 1353
            +  V   L  HGY  +G ++ Y+G TG  L A ++ GP YYQ+L+HMV  K  A
Sbjct: 663  VDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDXKXXA 716



 Score =  113 bits (283), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 91/151 (60%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  T+TN L  ++ TGNW   ++    + GV+QVL+R ++ S L  + R N+
Sbjct: 43  EFNLTLGVKSTTLTNGLKYSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNT 102

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM  +T  +  + ++  M  
Sbjct: 103 PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCCVTVGSPSEPIIDFMVQ 162

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
             +E +  +  E L SP    VFVNG+  G+
Sbjct: 163 RNMEILEEY--EPLRSPNATKVFVNGVWVGV 191



 Score = 90.1 bits (222), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 350 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGXXXTN 395

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 396 FDERMDTMTNILYYPQKPLATTRSMEFLKFRELPAGQNAI 435


>gi|52699776|gb|AAU86950.1| DNA-dependent RNA polymerase II second largest subunit [Acarospora
            hilaris]
          Length = 726

 Score =  213 bits (541), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 106/264 (40%), Positives = 166/264 (62%), Gaps = 5/264 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG      + R+DT+   L Y Q+P+  ++++    F
Sbjct: 376  IIPFPDHNQSPRNTYQSAMGKQAMGVXLTXYEQRMDTMANILYYPQKPLATTRSMEFLKF 435

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR+     K+      ++ 
Sbjct: 436  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSVVEQF 495

Query: 1034 LGPLLEADTRKPVY-RHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAISMATPEY- 1090
              P + +DT K  +  +  LD DGIVAPG ++    +++ K+ P       +   T  + 
Sbjct: 496  EKP-MRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKLHI 554

Query: 1091 -KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             ++V    + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHGQKG IG+ 
Sbjct: 555  KRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGIT 614

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
              QEDMPF + GI PD+I+NPH +
Sbjct: 615  YRQEDMPFTKEGIVPDLIINPHAI 638



 Score =  157 bits (398), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 87/240 (36%), Positives = 133/240 (55%), Gaps = 13/240 (5%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESG-ICPDIIMNPHGL 1173
            ++ Q  +P   D    +HG        G++  G+ V  ED+   ++  I PD       L
Sbjct: 491  VVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPD----AEEL 546

Query: 1174 KGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
                ++   ++V    + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHG
Sbjct: 547  GQRTKLHIKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHG 606

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGT 1293
            QKG IG+   QEDMPF + GI PD+I+NPH  PSRMT+  LIE    K   + G   + T
Sbjct: 607  QKGTIGITYRQEDMPFTKEGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDAT 666

Query: 1294 AFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHA 1353
             F    +  V + L  HGY  +G ++ Y+G TG  L A ++ GP YYQ+L+HMV  KI A
Sbjct: 667  PFTEITVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDXKIXA 726



 Score =  113 bits (282), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 90/151 (59%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW   ++    + GV+QVL+R ++ S L  + R N+
Sbjct: 39  EFNLTLGVKSTTITNGLKYSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNT 98

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM +I+     + ++  M  
Sbjct: 99  PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYISVGTPSEPIIDFMVQ 158

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
             +E +  +  E   SP    VFVNG+  G+
Sbjct: 159 RNMEVLEEY--EPQRSPNATKVFVNGVWVGV 187



 Score = 87.8 bits (216), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 42/100 (42%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG     
Sbjct: 360 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVXLTX 405

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
            + R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 406 YEQRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 445


>gi|56694362|gb|AAW22921.1| RNA polymerase II second largest subunit [Pseudotsuga menziesii]
          Length = 554

 Score =  213 bits (541), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 107/262 (40%), Positives = 160/262 (61%), Gaps = 3/262 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 189  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHF 248

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L +R+ +   K+      +  
Sbjct: 249  RQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKRMGTLVKEEF 308

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEY--K 1091
              P  E         +  LD DG+  PG ++    V++ K+ P ++    S     Y  +
Sbjct: 309  GCPNRENTLNMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP-VTQEETSGQQQRYIRR 367

Query: 1092 EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVE 1151
            +   S + S    +++VL+++N +    +K+ +R  R P+IGDKFSSRHGQKG +G+   
Sbjct: 368  DQSTSLRHSESGMVDQVLLTTNQDGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYT 427

Query: 1152 QEDMPFNESGICPDIIMNPHGL 1173
            QEDMP+   GI PDII+NPH +
Sbjct: 428  QEDMPWTSEGITPDIIVNPHAI 449



 Score =  181 bits (459), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 86/188 (45%), Positives = 119/188 (63%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++   S + S    +++VL+++N +    +K+ +R  R P+IGDKFSSRHGQKG +G+  
Sbjct: 367  RDQSTSLRHSESGMVDQVLLTTNQDGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTY 426

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMP+   GI PDII+NPH  PSRMT+G+LIE + GK     G   + T F    +  
Sbjct: 427  TQEDMPWTSEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDS 486

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
            + + L + GY  +G +  Y+G TG  L A I+ GP YYQ+LKHMV DKIH+R RGP  +L
Sbjct: 487  ISKALHKCGYQMRGFETMYNGHTGRKLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQIL 546

Query: 1363 TRQPTGRR 1370
            TRQP   R
Sbjct: 547  TRQPAEGR 554



 Score =  100 bits (250), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 62/171 (36%), Positives = 84/171 (49%), Gaps = 39/171 (22%)

Query: 677 RPTFLNMHQFLGFKRFD---------------DFLYEGKIEYLDVNEGNDSHIAVSESGI 721
           RP F+   Q L  K+ D               D +  G IEY+D  E   + I+++ + +
Sbjct: 98  RPLFVVEKQRLSIKKSDITRLQERTTTEEGWHDLVTRGFIEYVDTEEEETTMISMTINDL 157

Query: 722 RPG----------VTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTY 771
                          TH EI P  +LGVCA I              +P+P HNQ+PRNTY
Sbjct: 158 VSARNNPAEAYSHTYTHCEIHPSLILGVCASI--------------IPFPDHNQSPRNTY 203

Query: 772 QCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAG 822
           Q AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F +LPAG
Sbjct: 204 QSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG 254


>gi|300394732|gb|ADK11904.1| DNA-directed RNA polymerase II subunit two, partial [Pseudomerulius
            aureus]
          Length = 345

 Score =  213 bits (541), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 105/263 (39%), Positives = 160/263 (60%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 18   IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKF 77

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 78   RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEF 137

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 138  EKPTRDNTLRMKHGTYEKLEDDGLIAPGTGVSGEDIIIGKTAPIPPDSEELGQRTRTHTR 197

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+S+N E    +K+ +R +R P+IGDKF+SRHGQKG IG+  
Sbjct: 198  RDVSTPLKSTENGIVDQVLISTNFEGQKFVKVRVRSSRIPQIGDKFASRHGQKGTIGITY 257

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDI++NPH +
Sbjct: 258  RQEDMPFTAEGIVPDIVINPHAI 280



 Score =  131 bits (329), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 63/148 (42%), Positives = 90/148 (60%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+S+N E    +K+ +R +R P+IGDKF+SRHGQKG IG+  
Sbjct: 198  RDVSTPLKSTENGIVDQVLISTNFEGQKFVKVRVRSSRIPQIGDKFASRHGQKGTIGITY 257

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDI++NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 258  RQEDMPFTAEGIVPDIVINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVES 317

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALE 1330
            V   L + GY  +G ++ Y G TG  L+
Sbjct: 318  VSTFLRQKGYQSRGLEVMYHGHTGRKLQ 345



 Score = 87.0 bits (214), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 55/156 (35%), Positives = 81/156 (51%), Gaps = 22/156 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 2   THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYLTN 47

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQISPGGAEELTARESCHEVLKI 846
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I    A    +  +  + + +
Sbjct: 48  FLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIV---AILCYSGYNQEDSVIM 104

Query: 847 ISFSISVAVFDSVWLG-----DVKQGVHQLSEEKEP 877
              SI   +F S++       + K GV QL E ++P
Sbjct: 105 NQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKP 140


>gi|290973756|ref|XP_002669613.1| DNA-directed RNA polymerase II [Naegleria gruberi]
 gi|284083163|gb|EFC36869.1| DNA-directed RNA polymerase II [Naegleria gruberi]
          Length = 1233

 Score =  213 bits (541), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 108/270 (40%), Positives = 162/270 (60%), Gaps = 19/270 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL + L Y QRP+V ++ +    F
Sbjct: 770  IIPFPDHNQSPRNTYQSAMGKQAMGVYITNFQQRMDTLAHVLYYPQRPLVTTQPMEYLRF 829

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++++DRG  R + YR             H+R 
Sbjct: 830  GELPAGQNAVVAIACYSGYNQEDSVIMNQSAIDRGLFRSVFYRTYS---------DHERK 880

Query: 1034 LGPLLEADTRKP---------VYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
             G  L  +  KP            +  L+ DGI+APG ++    +++ K++P    SA  
Sbjct: 881  KGNFLLENFEKPKRDTTAGMKTSTYEKLEDDGIIAPGVRVSGSDIIIGKTVPLPEESAKQ 940

Query: 1085 MATPEYK-EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1143
              + + + ++    + +    ++ V+V+++SE    +K+ +R  R P+IGDKFSSRHGQK
Sbjct: 941  KTSRQTRLDMSTPLRSNENGIVDTVVVTTDSEGFKFVKIKVRVVRIPQIGDKFSSRHGQK 1000

Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G  G+   QED+PF   GI PDII+NPH +
Sbjct: 1001 GTCGITYRQEDLPFTREGIVPDIIVNPHAI 1030



 Score =  180 bits (457), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 88/176 (50%), Positives = 115/176 (65%)

Query: 1197 LEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICP 1256
            ++ V+V+++SE    +K+ +R  R P+IGDKFSSRHGQKG  G+   QED+PF   GI P
Sbjct: 962  VDTVVVTTDSEGFKFVKIKVRVVRIPQIGDKFSSRHGQKGTCGITYRQEDLPFTREGIVP 1021

Query: 1257 DIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQG 1316
            DII+NPH  PSRMTVG+LIE L GK   + GN  + T F    +    E L   GY  + 
Sbjct: 1022 DIIVNPHAIPSRMTVGQLIECLLGKISSLSGNEGDATPFTDANVNYFSEMLHSLGYQKRA 1081

Query: 1317 KDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
             ++ ++G TG  LEA I+ GP YYQ+LKHMV DKIH+R+RGP   LTRQP   R +
Sbjct: 1082 NEVMFNGHTGRKLEAQIFIGPTYYQRLKHMVDDKIHSRARGPLQNLTRQPVEGRAR 1137



 Score =  128 bits (322), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 62/158 (39%), Positives = 102/158 (64%), Gaps = 4/158 (2%)

Query: 181 IKAAQFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTR 240
           +K+++ D+   + + TIT  L  ++ TGNW ++  +  R GV QVL+RL+Y S L  + R
Sbjct: 477 LKSSEIDVAPAVNKRTITKGLQYSLATGNWGVQGSRDIRAGVAQVLNRLTYTSTLSHLRR 536

Query: 241 INSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKI 300
           +N+  E++ K + PR L  +QWG++CP++TPEG ACGLVKNLALM++IT   D+ ++ K+
Sbjct: 537 LNTPIERSGKQAAPRQLHNTQWGVICPAETPEGGACGLVKNLALMSYITVGTDKTHISKM 596

Query: 301 MYNIGIEHIAMFNGEELSSPGVYLVFVNGILAGITCHH 338
           +  +GI  +   +  +L+      VF+NG+  G+  HH
Sbjct: 597 LDELGINKLHELDESDLNK--YTKVFLNGMWMGV--HH 630



 Score = 92.0 bits (227), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 77/151 (50%), Gaps = 30/151 (19%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAV------------SESGIRPGVT----THLEIAPFT 735
           +D+ L +G +E +D  E     IA+            +E   R G +    TH EI P  
Sbjct: 703 WDNLLEQGLVELIDTEEEESIMIAMDFRELVEKRSSANEGKSRKGGSRQPYTHAEIHPSM 762

Query: 736 LLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLM 795
           +LG+   I              +P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL 
Sbjct: 763 ILGILGSI--------------IPFPDHNQSPRNTYQSAMGKQAMGVYITNFQQRMDTLA 808

Query: 796 YNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
           + L Y QRP+V ++ +    F +LPAG+  +
Sbjct: 809 HVLYYPQRPLVTTQPMEYLRFGELPAGQNAV 839



 Score = 42.0 bits (97), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 32/57 (56%)

Query: 453 VDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKR 509
           ++ A + L    + H+ + +  +  KA ++  M+ R++L       LDDRD+YGNKR
Sbjct: 389 MNHAEEILQKEMLPHVGIGDTSYDRKAYFIGYMVHRLLLGALGRRPLDDRDHYGNKR 445


>gi|384497209|gb|EIE87700.1| DNA-directed RNA polymerase II subunit RPB2 [Rhizopus delemar RA
            99-880]
          Length = 1215

 Score =  213 bits (541), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 101/263 (38%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL   L Y Q+P+  ++++    F
Sbjct: 750  IIPFPDHNQSPRNTYQSAMGKQAMGVYLTNFQMRMDTLANILYYPQKPLTTTRSMEFLRF 809

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R L +R      K+      +  
Sbjct: 810  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSLFFRTYMDAEKKAGMMFMEEF 869

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  E+  R     +  L++DG++APG ++    +++ K+ P  + S        T   
Sbjct: 870  EKPTRESTLRLKHGTYEKLEEDGLIAPGTRVSGDDIIIGKTAPIPAESEELGQRTTTHNK 929

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++     + +    +++V++++N +    +K+ +R TR P++GDKF+SRHGQKG IG+  
Sbjct: 930  RDASTPLRSTETGIVDQVMLTTNQDGLKFVKVRVRSTRVPQMGDKFASRHGQKGTIGVTY 989

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QED PF+  GI PD+I+NPH +
Sbjct: 990  RQEDFPFSAEGITPDLIINPHAI 1012



 Score =  186 bits (472), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 83/174 (47%), Positives = 117/174 (67%)

Query: 1197 LEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICP 1256
            +++V++++N +    +K+ +R TR P++GDKF+SRHGQKG IG+   QED PF+  GI P
Sbjct: 944  VDQVMLTTNQDGLKFVKVRVRSTRVPQMGDKFASRHGQKGTIGVTYRQEDFPFSAEGITP 1003

Query: 1257 DIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQG 1316
            D+I+NPH  PSRMT+G LIE L GK   + GN  + T F    +  + + L   GY  +G
Sbjct: 1004 DLIINPHAIPSRMTIGHLIECLLGKVSTLTGNEGDATPFTDVTVEAISQALQAQGYQQRG 1063

Query: 1317 KDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRR 1370
             ++ Y+G TG  L A ++ GP YYQ+LKHMV DKIH+R+RGP  +LTRQP   R
Sbjct: 1064 FEVMYNGFTGRKLNAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGR 1117



 Score =  119 bits (297), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 63/154 (40%), Positives = 99/154 (64%), Gaps = 9/154 (5%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++ +TITN L  ++ TGNW  ++  M+ R GV+QVL+R ++ S L  + R N+
Sbjct: 447 EFNLSLAVKSNTITNGLKYSLATGNWGDQKKAMQARAGVSQVLNRYTFASTLSHLRRCNT 506

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM++I+  +    +  IM+ 
Sbjct: 507 PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMSYISVGSSANPL--IMF- 563

Query: 304 IGIEHIAMFNGEELSSPGVY---LVFVNGILAGI 334
             +E  AM N EELS+  +     VFVNG+  GI
Sbjct: 564 --LEEWAMENLEELSATSIADSTKVFVNGVWIGI 595



 Score = 97.4 bits (241), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 63/193 (32%), Positives = 86/193 (44%), Gaps = 57/193 (29%)

Query: 677 RPTFLNMHQFLGFKRFD--------------DFLYEGKIEYLDVNEGNDSHIAV------ 716
           RP FL  +Q L   R D              D + EG +EY+D +E   + I +      
Sbjct: 641 RPLFLVENQQLRLTREDVGRLQDPDDDFGWQDLIAEGIVEYVDADEEETAMICMTPEDLA 700

Query: 717 -----------------------SESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFH 753
                                  S++G      TH EI P  +LG+CA I          
Sbjct: 701 ESRMATQYGAPLQQTRSLASRVKSQTGTYTHTWTHCEIHPSMILGICASI---------- 750

Query: 754 SPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRI 813
               +P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL   L Y Q+P+  ++++  
Sbjct: 751 ----IPFPDHNQSPRNTYQSAMGKQAMGVYLTNFQMRMDTLANILYYPQKPLTTTRSMEF 806

Query: 814 TNFHKLPAGKCQI 826
             F +LPAG+  I
Sbjct: 807 LRFRELPAGQNAI 819



 Score = 53.9 bits (128), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 14/114 (12%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A + L    + H+         K+ +   MI R++LA  +   LDDRD+YG KR++LAG 
Sbjct: 358 ASEILQKELLPHVGTAYKTETRKSYFFGYMIHRLLLAALERRELDDRDHYGKKRMDLAGP 417

Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYGN 555
           L++ +F  +F++   ++           +E NLS  V    + +G  + L  GN
Sbjct: 418 LMAGLFRILFRKLTRDVAKYLQKCIESSREFNLSLAVKSNTITNGLKYSLATGN 471



 Score = 45.4 bits (106), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 22/93 (23%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIE----------------------Y 378
           + KP + E+   ++   P E R+R+LTY+AP+ +D+                        
Sbjct: 97  LSKPTMTEADGSSQPMFPQEARIRNLTYAAPLYIDMSKRTQIARPQDPNNPITNPNDFFI 156

Query: 379 TRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKTE 411
             GS+   ++ + +G++P+ML+SS C+L +  E
Sbjct: 157 DEGSEAPPKTKVFVGKVPVMLRSSYCILHDMPE 189



 Score = 45.1 bits (105), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 33/54 (61%)

Query: 101 DETSKLKDSPEIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANI 154
           DE     +S    D W ++ SF +EKGLV+  +DSFD F+   +++L+  N+N+
Sbjct: 20  DEQMYEDESITQEDCWTVIGSFFEEKGLVRQQLDSFDEFVQNTMQELVDENSNL 73


>gi|103001854|gb|ABF71524.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
            discurrens]
          Length = 702

 Score =  213 bits (541), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 105/264 (39%), Positives = 165/264 (62%), Gaps = 5/264 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMG QAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 357  IIPFPDHNQSPRNTYQSAMGXQAMGXXXXNYDQRMDTMANILYYPQKPLATTRSMEFLKF 416

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR+     K+      ++ 
Sbjct: 417  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSVVEQF 476

Query: 1034 LGPLLEADTRKPVY-RHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAISMATPEY- 1090
              P + +DT K  +  +  LD DGIVAPG ++    +++ K+ P       +   T  + 
Sbjct: 477  EKP-MRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKLHV 535

Query: 1091 -KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             ++V    + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHGQKG IG+ 
Sbjct: 536  KRDVSTPLRSTENGIVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGIT 595

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
              QEDMPF + G+ PD+I+NPH +
Sbjct: 596  YRQEDMPFTKEGVVPDLIINPHAI 619



 Score =  152 bits (383), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 83/234 (35%), Positives = 129/234 (55%), Gaps = 13/234 (5%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESG-ICPDIIMNPHGL 1173
            ++ Q  +P   D    +HG        G++  G+ V  ED+   ++  I PD       L
Sbjct: 472  VVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPD----AEEL 527

Query: 1174 KGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
                ++   ++V    + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHG
Sbjct: 528  GQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHG 587

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGT 1293
            QKG IG+   QEDMPF + G+ PD+I+NPH  PSRMT+  LIE    K   + G   + T
Sbjct: 588  QKGTIGITYRQEDMPFTKEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDAT 647

Query: 1294 AFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMV 1347
             F    +  V + L  HGY  +G +  Y+G TG  L A ++ GP YYQ+L+HMV
Sbjct: 648  PFTEVTVDSVSKLLREHGYQSRGFEAMYNGHTGRKLVAQVFLGPTYYQRLRHMV 701



 Score =  114 bits (286), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 91/151 (60%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW   ++    + GV+QVL+R ++ S L  + R N+
Sbjct: 34  EFNLTLGVKSTTITNGLKYSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNT 93

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT     + +++ M  
Sbjct: 94  PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIEFMIQ 153

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
             +E +  +  E   SP    VFVNG+  G+
Sbjct: 154 RNMEVLEEY--EPQRSPNATKVFVNGVWVGV 182



 Score = 88.2 bits (217), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/100 (42%), Positives = 57/100 (57%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMG QAMG    N
Sbjct: 341 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGXQAMGXXXXN 386

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 387 YDQRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 426


>gi|354992115|gb|AER45764.1| RNA polymerase II second largest subunit [Pleurotus ostreatus]
          Length = 687

 Score =  213 bits (541), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 160/263 (60%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 345  IIPFPDHNQSPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKF 404

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 405  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSVDRGLFRSMYYRSYMDLEKKSGIQQLEEF 464

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 465  EKPSRDNTLRMKHGTYDKLENDGLIAPGTGVVGEDIIIGKTAPIPPDSEELGQRTRTHTR 524

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++N E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 525  RDVSTPLKSTENGIVDQVLITTNHEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 584

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 585  RQEDMPFTCEGIVPDIIINPHAI 607



 Score =  156 bits (394), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 75/168 (44%), Positives = 103/168 (61%)

Query: 1178 RITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV 1237
            R    ++V    K +    +++VL+++N E    +K+ +R TR P+IGDKF+SRHGQKG 
Sbjct: 520  RTHTRRDVSTPLKSTENGIVDQVLITTNHEGQKFVKIRVRSTRIPQIGDKFASRHGQKGT 579

Query: 1238 IGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGG 1297
            IG+   QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F  
Sbjct: 580  IGITYRQEDMPFTCEGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTD 639

Query: 1298 TKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKH 1345
              +  V   L + GY  +G ++ Y G TG  L+A +Y GP YYQ+LKH
Sbjct: 640  LTVESVSAFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKH 687



 Score =  112 bits (281), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 58/151 (38%), Positives = 91/151 (60%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW  +R  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 39  EFNLTLAVKHQTITNGLKYSLATGNWGDQRKSMSSKAGVSQVLNRYTYASTLSHLRRCNT 98

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM+ I+  +    +++ +  
Sbjct: 99  PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSISAPVIEFLEE 158

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E +        SS     VFVNG+  G+
Sbjct: 159 WGLESL---EENAHSSIPCTKVFVNGVWMGV 186



 Score = 88.2 bits (217), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 47/121 (38%), Positives = 65/121 (53%), Gaps = 14/121 (11%)

Query: 706 VNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQ 765
           VN+G     A  ++       TH EI P  +LG+CA I              +P+P HNQ
Sbjct: 308 VNDGEYDPAARLKASTHAHTWTHCEIHPSMILGICASI--------------IPFPDHNQ 353

Query: 766 APRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQ 825
           +PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  
Sbjct: 354 SPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNA 413

Query: 826 I 826
           I
Sbjct: 414 I 414


>gi|45545333|gb|AAS67514.1| DNA-dependent RNA polymerase II second largest subunit, partial
            [Melanomma radicans]
          Length = 936

 Score =  213 bits (541), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 110/284 (38%), Positives = 165/284 (58%), Gaps = 5/284 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R++T+M  L Y Q+P+  ++++    F
Sbjct: 561  IIPFPDHNQSPRNTYQSAMGKQAMGVALTNYALRMETMMNVLYYPQKPLATTRSMEYLKF 620

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR      K+      +R 
Sbjct: 621  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTEQEKRIGVNVLERF 680

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEY--- 1090
              P      R     +  LD DG+VAPG ++    +++ K+ P I   A  +        
Sbjct: 681  EKPTRADTLRLKGGTYDKLDDDGVVAPGVRVSGDDIIIGKTAP-IPTDAKELGQKTTMHT 739

Query: 1091 -KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             ++V    + +    +++VL ++N+E    +K+  R T+ P+IGDKF+SRHGQKG IG+ 
Sbjct: 740  KRDVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTTKVPQIGDKFASRHGQKGTIGIT 799

Query: 1150 VEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSV 1193
              QEDMPF   G+ PD+I+NPH +     I    E  +S  GS+
Sbjct: 800  YRQEDMPFTREGLTPDLIINPHAIPSRMTIAHLVECLLSKVGSL 843



 Score =  189 bits (479), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 86/190 (45%), Positives = 124/190 (65%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    + +    +++VL ++N+E    +K+  R T+ P+IGDKF+SRHGQKG IG+  
Sbjct: 741  RDVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTTKVPQIGDKFASRHGQKGTIGITY 800

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   G+ PD+I+NPH  PSRMT+  L+E L  K G ++GN  + T F    +  
Sbjct: 801  RQEDMPFTREGLTPDLIINPHAIPSRMTIAHLVECLLSKVGSLKGNEGDATPFTDVTVDG 860

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
            V   L +HGY  +G ++ Y+G TG+ L A ++ GP YYQ+L+HMV DKIHAR+RGP  +L
Sbjct: 861  VSNLLAQHGYQQRGFEVMYNGHTGKKLRAQVFLGPTYYQRLRHMVDDKIHARARGPLQIL 920

Query: 1363 TRQPTGRRWK 1372
            TRQP   R +
Sbjct: 921  TRQPVEGRAR 930



 Score =  103 bits (257), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 88/150 (58%), Gaps = 3/150 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++   +TN L  ++ TGNW   ++    + GV+QVL+R +Y S L  + R N+
Sbjct: 236 EFNVQMAVKGSVLTNGLKYSLATGNWGDQKKAASAKAGVSQVLNRYTYASTLSHLRRTNT 295

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNL+LM +++   +   +   M  
Sbjct: 296 PVGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGTESTPITDYMSQ 355

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAG 333
             +E +  +  + + +P    VFVNG+  G
Sbjct: 356 RQMELLEEY--DPVVNPSAIKVFVNGVWVG 383



 Score = 90.5 bits (223), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 76/162 (46%), Gaps = 44/162 (27%)

Query: 695 FLYEGKIEYLDVNEGNDSHIAVSESGIRP------GVT---------------------- 726
            L+ G IEYLD  E   + I ++   +        GVT                      
Sbjct: 483 LLHSGVIEYLDAEEEETAMIVMTPEDLEEHRELQLGVTAPAVPDEDRHRRIKPKPNPSVR 542

Query: 727 --THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIG 784
             TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG   
Sbjct: 543 FYTHCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVAL 588

Query: 785 YNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
            N   R++T+M  L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 589 TNYALRMETMMNVLYYPQKPLATTRSMEYLKFRELPAGQNAI 630



 Score = 43.9 bits (102), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 14/114 (12%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A++ +    + HI         KA +   MI R++  +      DDRD++G KRL+LAG 
Sbjct: 147 AKEIMQREFLPHISQREGADTRKAFFFGYMIHRLLQCVLGRREEDDRDHFGKKRLDLAGP 206

Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLSGVVN---LVSGWWFELKYGN 555
           L++ +F  +F +   ++           +E N+   V    L +G  + L  GN
Sbjct: 207 LIANLFRILFLKLTKDVFKYLQKCVENNQEFNVQMAVKGSVLTNGLKYSLATGN 260


>gi|302892877|ref|XP_003045320.1| hypothetical protein NECHADRAFT_70495 [Nectria haematococca mpVI
            77-13-4]
 gi|256726245|gb|EEU39607.1| hypothetical protein NECHADRAFT_70495 [Nectria haematococca mpVI
            77-13-4]
          Length = 1261

 Score =  213 bits (541), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 101/263 (38%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 790  IIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSMEFLKF 849

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L +R+     K+      +  
Sbjct: 850  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYSDQEKKVGLNYTEVF 909

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  ++  R     +  LD+DGIVAPG ++    +++ K+ P    +          + 
Sbjct: 910  EKPFQQSTLRMKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAPIDQENQDLGTRTTVHQR 969

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            +++    + +    ++ V+V+ N+++   +K+ +R T+ P+IGDKF+SRHGQKG IG+  
Sbjct: 970  RDISTPLRSTENGIVDSVIVTVNADNVKYVKVRVRTTKIPQIGDKFASRHGQKGTIGVTY 1029

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF+  G+ PDII+NPH +
Sbjct: 1030 RQEDMPFSREGVTPDIIINPHAI 1052



 Score =  187 bits (476), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 86/194 (44%), Positives = 126/194 (64%)

Query: 1179 ITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVI 1238
            + + +++    + +    ++ V+V+ N+++   +K+ +R T+ P+IGDKF+SRHGQKG I
Sbjct: 966  VHQRRDISTPLRSTENGIVDSVIVTVNADNVKYVKVRVRTTKIPQIGDKFASRHGQKGTI 1025

Query: 1239 GLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGT 1298
            G+   QEDMPF+  G+ PDII+NPH  PSRMT+  LIE L  K   +EG   + T F   
Sbjct: 1026 GVTYRQEDMPFSREGVTPDIIINPHAIPSRMTIAHLIECLLSKVSTLEGMEGDATPFTDV 1085

Query: 1299 KLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGP 1358
             +  V E L +HGY  +G +I Y+G TG  L A ++ GP YYQ+L+HMV DKIHAR+RGP
Sbjct: 1086 TVDSVSELLRKHGYQSRGFEIMYNGHTGRKLRAQVFFGPTYYQRLRHMVDDKIHARARGP 1145

Query: 1359 RVVLTRQPTGRRWK 1372
              ++TRQP   R +
Sbjct: 1146 VQIMTRQPVEGRAR 1159



 Score =  111 bits (277), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 52/151 (34%), Positives = 92/151 (60%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
            F++   ++  T++N L  ++ TGNW   ++      GV+QVL+R ++ S L  + R N+
Sbjct: 468 HFNLAVGIKPGTLSNGLKYSLATGNWGDQKKAASSTAGVSQVLNRYTFASTLSHLRRTNT 527

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNL+LM +++  +  + +++ M N
Sbjct: 528 PIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSPSEPLIEFMIN 587

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E +  +  E L  P    +FVNG+  G+
Sbjct: 588 RGMEVVEEY--EPLRYPHATKIFVNGVWCGV 616



 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 774 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGFFLTN 819

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 820 YSRRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 859



 Score = 54.7 bits (130), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 42/77 (54%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A+D L    + HI         KA +L  M+ +++         DDRD++G KRL+LAG 
Sbjct: 379 AKDILQKETLPHISQSEGSETRKAFFLGYMVHKLLQCALGRREPDDRDHFGKKRLDLAGP 438

Query: 516 LLSLMFEDVFKRFNSEL 532
           LL+ +F  + +R N+EL
Sbjct: 439 LLAKLFRGIVRRMNTEL 455


>gi|146302818|ref|YP_001190134.1| DNA-directed RNA polymerase subunit B [Metallosphaera sedula DSM
            5348]
 gi|145701068|gb|ABP94210.1| DNA-directed RNA polymerase, subunit B' / DNA-directed RNA
            polymerase, subunit B' [Metallosphaera sedula DSM 5348]
          Length = 1124

 Score =  213 bits (541), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 109/262 (41%), Positives = 158/262 (60%), Gaps = 2/262 (0%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++PYP HNQ+PRNTYQ AM KQA+G    N Q R DT  + L Y Q+P+V+++ +    +
Sbjct: 651  IIPYPEHNQSPRNTYQSAMAKQALGLYAANYQIRTDTRAHLLHYPQKPIVQTRALEAIGY 710

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             + PAG NA  A+MSY+GY++EDA+IMNK+S+DRG  R   +R       +YP    D I
Sbjct: 711  TERPAGNNAIFALMSYTGYNMEDAVIMNKSSVDRGMFRSTFFRLYSAEEIKYPGGQEDEI 770

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEY--K 1091
            L P       K    +R L+ +GIV+P   +    VL+ K  P   +      +P+   +
Sbjct: 771  LLPEPGVRGYKGKDYYRLLESNGIVSPEVDVKGGDVLIGKVSPPRFLQEFKELSPDQAKR 830

Query: 1092 EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVE 1151
            +  +  +      ++ VLV+  SE   L+K+ +R  R PEIGDKF++RHGQKGVIG+++ 
Sbjct: 831  DTSIITRHGERGTVDLVLVTETSEGNKLVKVRVRDLRIPEIGDKFATRHGQKGVIGMLIP 890

Query: 1152 QEDMPFNESGICPDIIMNPHGL 1173
            Q DMP+  SG+ PDII+NPH L
Sbjct: 891  QVDMPYTTSGLVPDIILNPHAL 912



 Score =  189 bits (480), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 91/173 (52%), Positives = 119/173 (68%)

Query: 1200 VLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDII 1259
            VLV+  SE   L+K+ +R  R PEIGDKF++RHGQKGVIG+++ Q DMP+  SG+ PDII
Sbjct: 847  VLVTETSEGNKLVKVRVRDLRIPEIGDKFATRHGQKGVIGMLIPQVDMPYTTSGLVPDII 906

Query: 1260 MNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDI 1319
            +NPH  PSRMTVG+++E +AGK     GN  + T F  T + ++Q +L+ HGY   G ++
Sbjct: 907  LNPHALPSRMTVGQIMEAIAGKFVAATGNPIDATPFYNTPIEEIQRKLLEHGYLSDGSEV 966

Query: 1320 FYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
             Y G TGE L+  I  G VYYQKL HMV DK+H R RGP  +LTRQPT  R +
Sbjct: 967  VYDGRTGEKLKGRILFGIVYYQKLHHMVADKMHGRGRGPVQILTRQPTEGRAR 1019



 Score =  100 bits (248), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 53/135 (39%), Positives = 74/135 (54%), Gaps = 15/135 (11%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKR 751
           FD  + EGKIE+LD  E  +++IA+    +     THLEI    +LG+ A I        
Sbjct: 601 FDTLVKEGKIEFLDAEEEENAYIALEPKDVTKD-HTHLEIWAPAILGITASI-------- 651

Query: 752 FHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTI 811
                 +PYP HNQ+PRNTYQ AM KQA+G    N Q R DT  + L Y Q+P+V+++ +
Sbjct: 652 ------IPYPEHNQSPRNTYQSAMAKQALGLYAANYQIRTDTRAHLLHYPQKPIVQTRAL 705

Query: 812 RITNFHKLPAGKCQI 826
               + + PAG   I
Sbjct: 706 EAIGYTERPAGNNAI 720



 Score = 93.2 bits (230), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/177 (32%), Positives = 93/177 (52%), Gaps = 13/177 (7%)

Query: 180 KIKAAQFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMT 239
           K++  +  I   +R D I+  +  A+ TGNW        R GV+Q+L R +++S L  + 
Sbjct: 370 KVRGRRLAINALVRPDIISERIRHALATGNWV-----GGRTGVSQLLDRTNWLSMLSHLR 424

Query: 240 RINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLK 299
           R+ S   + +     R L G+QWG +CP +TPEG   GLVKN+AL+  I+   +EK++ +
Sbjct: 425 RVVSSLARGQPNFEARDLHGTQWGRMCPFETPEGPNSGLVKNIALLAQISVGINEKSLER 484

Query: 300 IMYNIGI----EHIAMFNGEELSSPGVYL---VFVNGILAGITCHHKEVCKPEIEES 349
            +YN+G+    + I     EE  S        V +NG L G     +E+ + +I ES
Sbjct: 485 TLYNLGVVPIDDAIKKVKSEEGQSENYQTWSKVILNGRLIGYYPDGRELAE-KIRES 540



 Score = 46.2 bits (108), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 6/83 (7%)

Query: 453 VDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMV---LALSDPDMLDDRDYYGNKR 509
           +  A   L    + HI         KA YLA  + +++   L   +PD   D+D+Y NKR
Sbjct: 283 IQKAEQILDKYFLPHIGTNPSDRVAKAYYLAFAVSKLIELYLGRREPD---DKDHYANKR 339

Query: 510 LELAGSLLSLMFEDVFKRFNSEL 532
           L+LAG L + +F   FK F  +L
Sbjct: 340 LKLAGDLFASLFRVAFKAFVKDL 362



 Score = 45.4 bits (106), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 37/61 (60%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQ 400
           V KP + E+    ++ TP E RLR+LTY+API + +     +     +++ IG +PIML+
Sbjct: 62  VGKPRVREADKGDKEITPMEARLRNLTYAAPIFLTMTPVENNIEGDPTEVHIGDIPIMLK 121

Query: 401 S 401
           S
Sbjct: 122 S 122



 Score = 43.5 bits (101), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 38/61 (62%), Gaps = 1/61 (1%)

Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
           + D+W +V ++ K +GLV+ H+DSF+ FI  ++++++     I +++ P   ++   I V
Sbjct: 4   VDDRWVIVEAYFKSRGLVRQHLDSFNDFIKNKLQEIIDEQGEIITEI-PGLKIRLGKIRV 62

Query: 172 G 172
           G
Sbjct: 63  G 63


>gi|384498030|gb|EIE88521.1| DNA-directed RNA polymerase II subunit RPB2 [Rhizopus delemar RA
            99-880]
          Length = 1193

 Score =  213 bits (541), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 101/263 (38%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL   L Y Q+P+  ++++    F
Sbjct: 728  IIPFPDHNQSPRNTYQSAMGKQAMGVYLTNFQMRMDTLANILYYPQKPLTTTRSMEFLRF 787

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R L +R      K+      +  
Sbjct: 788  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSLFFRTYMDAEKKAGMMFMEEF 847

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  E+  R     +  L++DG++APG ++    +++ K+ P  + S        T   
Sbjct: 848  EKPTRESTLRLKHGTYEKLEEDGLIAPGTRVSGDDIIIGKTAPIPAESEELGQRTTTHNK 907

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++     + +    +++V++++N +    +K+ +R TR P++GDKF+SRHGQKG IG+  
Sbjct: 908  RDASTPLRSTETGIVDQVMLTTNQDGLKFVKVRVRSTRVPQMGDKFASRHGQKGTIGVTY 967

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QED PF+  GI PD+I+NPH +
Sbjct: 968  RQEDFPFSAEGITPDLIINPHAI 990



 Score =  185 bits (469), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 82/174 (47%), Positives = 117/174 (67%)

Query: 1197 LEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICP 1256
            +++V++++N +    +K+ +R TR P++GDKF+SRHGQKG IG+   QED PF+  GI P
Sbjct: 922  VDQVMLTTNQDGLKFVKVRVRSTRVPQMGDKFASRHGQKGTIGVTYRQEDFPFSAEGITP 981

Query: 1257 DIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQG 1316
            D+I+NPH  PSRMT+G +IE L GK   + GN  + T F    +  + + L   GY  +G
Sbjct: 982  DLIINPHAIPSRMTIGHMIECLLGKVSTLTGNEGDATPFTDVTVEAISQALQAQGYQQRG 1041

Query: 1317 KDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRR 1370
             ++ Y+G TG  L A ++ GP YYQ+LKHMV DKIH+R+RGP  +LTRQP   R
Sbjct: 1042 FEVMYNGFTGRKLNAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGR 1095



 Score =  119 bits (299), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 68/179 (37%), Positives = 111/179 (62%), Gaps = 10/179 (5%)

Query: 161 LFYLKYLDIHVGIADKIIPKIKAA-QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME- 218
           LF L +  +   +A  +   I+++ +F++   ++ +TITN L  ++ TGNW  ++  M+ 
Sbjct: 400 LFRLLFRKLTRDVAKYLQKCIESSREFNLSLAVKSNTITNGLKYSLATGNWGDQKKAMQA 459

Query: 219 RQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGL 278
           R GV+QVL+R ++ S L  + R N+   +  K++ PR L  + WG++CP++TPEG+ACGL
Sbjct: 460 RAGVSQVLNRYTFASTLSHLRRCNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGL 519

Query: 279 VKNLALMTHITTENDEKNMLKIMYNIGIEHIAMFNGEELSSPGVY---LVFVNGILAGI 334
           VKNLALM++I+  +    +  IM+   +E  AM N EELS+  +     VFVNG+  GI
Sbjct: 520 VKNLALMSYISVGSSANPL--IMF---LEEWAMENLEELSATSIADSTKVFVNGVWIGI 573



 Score = 97.4 bits (241), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 63/193 (32%), Positives = 86/193 (44%), Gaps = 57/193 (29%)

Query: 677 RPTFLNMHQFLGFKRFD--------------DFLYEGKIEYLDVNEGNDSHIAV------ 716
           RP FL  +Q L   R D              D + EG +EY+D +E   + I +      
Sbjct: 619 RPLFLVENQQLRLTRDDVGRLQDPDDDFGWQDLIAEGIVEYVDADEEETAMICMTPEDLS 678

Query: 717 -----------------------SESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFH 753
                                  S++G      TH EI P  +LG+CA I          
Sbjct: 679 ESRMASQYGAPLQQTRSLASRVKSQTGTYAHTWTHCEIHPSMILGICASI---------- 728

Query: 754 SPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRI 813
               +P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL   L Y Q+P+  ++++  
Sbjct: 729 ----IPFPDHNQSPRNTYQSAMGKQAMGVYLTNFQMRMDTLANILYYPQKPLTTTRSMEF 784

Query: 814 TNFHKLPAGKCQI 826
             F +LPAG+  I
Sbjct: 785 LRFRELPAGQNAI 797



 Score = 53.9 bits (128), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 14/114 (12%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A + L    + H+         K+ +   MI R++LA  +   LDDRD+YG KR++LAG 
Sbjct: 336 ASEILQKELLPHVGTAYKTETRKSYFFGYMIHRLLLAALERRELDDRDHYGKKRMDLAGP 395

Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYGN 555
           L++ +F  +F++   ++           +E NLS  V    + +G  + L  GN
Sbjct: 396 LMAGLFRLLFRKLTRDVAKYLQKCIESSREFNLSLAVKSNTITNGLKYSLATGN 449



 Score = 45.4 bits (106), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 22/93 (23%)

Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIE----------------------Y 378
           + KP + E+   ++   P E R+R+LTY+AP+ +D+                        
Sbjct: 75  LSKPTMTEADGSSQPMFPQEARIRNLTYAAPLYIDMSKRTQIARPQDPNDPRTNPNDLFV 134

Query: 379 TRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKTE 411
             GS+   ++ + +G++P+ML+SS C+L +  E
Sbjct: 135 DEGSEAPPKTKVFVGKVPVMLRSSYCILHDMPE 167



 Score = 44.7 bits (104), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 29/41 (70%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANI 154
           D W ++ SF +EKGLV+  +DSFD F+   +++L+  N+N+
Sbjct: 11  DCWTVIGSFFEEKGLVRQQLDSFDEFVQNTMQELVDENSNL 51


>gi|354992123|gb|AER45768.1| RNA polymerase II second largest subunit [Pleurotus ostreatus]
          Length = 687

 Score =  213 bits (541), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 160/263 (60%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 345  IIPFPDHNQSPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKF 404

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 405  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSVDRGLFRSMYYRSYMDLEKKSGIQQLEEF 464

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 465  EKPSRDNTLRMKHGTYDKLENDGLIAPGTGVVGEDIIIGKTAPIPPDSEELGQRTRTHTR 524

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++N E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 525  RDVSTPLKSTENGIVDQVLITTNHEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 584

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 585  RQEDMPFTCEGIVPDIIINPHAI 607



 Score =  156 bits (394), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 75/168 (44%), Positives = 103/168 (61%)

Query: 1178 RITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV 1237
            R    ++V    K +    +++VL+++N E    +K+ +R TR P+IGDKF+SRHGQKG 
Sbjct: 520  RTHTRRDVSTPLKSTENGIVDQVLITTNHEGQKFVKIRVRSTRIPQIGDKFASRHGQKGT 579

Query: 1238 IGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGG 1297
            IG+   QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F  
Sbjct: 580  IGITYRQEDMPFTCEGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTD 639

Query: 1298 TKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKH 1345
              +  V   L + GY  +G ++ Y G TG  L+A +Y GP YYQ+LKH
Sbjct: 640  LTVESVSAFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKH 687



 Score =  111 bits (277), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 91/151 (60%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 39  EFNLTLAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT 98

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM+ I+  +    +++ +  
Sbjct: 99  PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSISAPVIEFLEE 158

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E +        SS     VFVNG+  G+
Sbjct: 159 WGLESL---EENAHSSIPCTKVFVNGVWMGV 186



 Score = 88.2 bits (217), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 47/121 (38%), Positives = 65/121 (53%), Gaps = 14/121 (11%)

Query: 706 VNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQ 765
           VN+G     A  ++       TH EI P  +LG+CA I              +P+P HNQ
Sbjct: 308 VNDGEYDPAARLKASTHAHTWTHCEIHPSMILGICASI--------------IPFPDHNQ 353

Query: 766 APRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQ 825
           +PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  
Sbjct: 354 SPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNA 413

Query: 826 I 826
           I
Sbjct: 414 I 414


>gi|354992117|gb|AER45765.1| RNA polymerase II second largest subunit [Pleurotus ostreatus]
          Length = 687

 Score =  213 bits (541), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 160/263 (60%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 345  IIPFPDHNQSPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKF 404

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 405  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSVDRGLFRSMYYRSYMDLEKKSGIQQLEEF 464

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 465  EKPSRDNTLRMKHGTYDKLENDGLIAPGTGVVGEDIIIGKTAPIPPDSEELGQRTRTHTR 524

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++N E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 525  RDVSTPLKSTENGIVDQVLITTNHEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 584

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 585  RQEDMPFTCEGIVPDIIINPHAI 607



 Score =  156 bits (394), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 75/168 (44%), Positives = 103/168 (61%)

Query: 1178 RITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV 1237
            R    ++V    K +    +++VL+++N E    +K+ +R TR P+IGDKF+SRHGQKG 
Sbjct: 520  RTHTRRDVSTPLKSTENGIVDQVLITTNHEGQKFVKIRVRSTRIPQIGDKFASRHGQKGT 579

Query: 1238 IGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGG 1297
            IG+   QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F  
Sbjct: 580  IGITYRQEDMPFTCEGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTD 639

Query: 1298 TKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKH 1345
              +  V   L + GY  +G ++ Y G TG  L+A +Y GP YYQ+LKH
Sbjct: 640  LTVESVSAFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKH 687



 Score =  111 bits (278), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 91/151 (60%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 39  EFNLTLAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT 98

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM+ I+  +    +++ +  
Sbjct: 99  PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSISAPVIEFLEE 158

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E +        SS     VFVNG+  G+
Sbjct: 159 WGLESL---EENAHSSVPCTKVFVNGVWMGV 186



 Score = 88.2 bits (217), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 47/121 (38%), Positives = 65/121 (53%), Gaps = 14/121 (11%)

Query: 706 VNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQ 765
           VN+G     A  ++       TH EI P  +LG+CA I              +P+P HNQ
Sbjct: 308 VNDGEYDPAARLKASTHAHTWTHCEIHPSMILGICASI--------------IPFPDHNQ 353

Query: 766 APRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQ 825
           +PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  
Sbjct: 354 SPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNA 413

Query: 826 I 826
           I
Sbjct: 414 I 414


>gi|354992111|gb|AER45762.1| RNA polymerase II second largest subunit [Pleurotus ostreatus]
 gi|354992133|gb|AER45773.1| RNA polymerase II second largest subunit [Pleurotus ostreatus]
          Length = 687

 Score =  213 bits (541), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 160/263 (60%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 345  IIPFPDHNQSPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKF 404

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 405  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSVDRGLFRSMYYRSYMDLEKKSGIQQLEEF 464

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 465  EKPSRDNTLRMKHGTYDKLENDGLIAPGTGVVGEDIIIGKTAPIPPDSEELGQRTRTHTR 524

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++N E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 525  RDVSTPLKSTENGIVDQVLITTNHEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 584

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 585  RQEDMPFTCEGIVPDIIINPHAI 607



 Score =  156 bits (394), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 75/168 (44%), Positives = 103/168 (61%)

Query: 1178 RITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV 1237
            R    ++V    K +    +++VL+++N E    +K+ +R TR P+IGDKF+SRHGQKG 
Sbjct: 520  RTHTRRDVSTPLKSTENGIVDQVLITTNHEGQKFVKIRVRSTRIPQIGDKFASRHGQKGT 579

Query: 1238 IGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGG 1297
            IG+   QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F  
Sbjct: 580  IGITYRQEDMPFTCEGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTD 639

Query: 1298 TKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKH 1345
              +  V   L + GY  +G ++ Y G TG  L+A +Y GP YYQ+LKH
Sbjct: 640  LTVESVSAFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKH 687



 Score =  111 bits (278), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 91/151 (60%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 39  EFNLTLAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT 98

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM+ I+  +    +++ +  
Sbjct: 99  PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSISAPVIEFLEE 158

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E +        SS     VFVNG+  G+
Sbjct: 159 WGLESL---EENAHSSVPCTKVFVNGVWMGV 186



 Score = 88.2 bits (217), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 47/121 (38%), Positives = 65/121 (53%), Gaps = 14/121 (11%)

Query: 706 VNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQ 765
           VN+G     A  ++       TH EI P  +LG+CA I              +P+P HNQ
Sbjct: 308 VNDGEYDPAARLKASTHAHTWTHCEIHPSMILGICASI--------------IPFPDHNQ 353

Query: 766 APRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQ 825
           +PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  
Sbjct: 354 SPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNA 413

Query: 826 I 826
           I
Sbjct: 414 I 414


>gi|354992107|gb|AER45760.1| RNA polymerase II second largest subunit [Pleurotus ostreatus]
          Length = 687

 Score =  213 bits (541), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 160/263 (60%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 345  IIPFPDHNQSPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKF 404

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 405  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSVDRGLFRSMYYRSYMDLEKKSGIQQLEEF 464

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 465  EKPSRDNTLRMKHGTYDKLENDGLIAPGTGVVGEDIIIGKTAPIPPDSEELGQRTRTHTR 524

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++N E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 525  RDVSTPLKSTENGIVDQVLITTNHEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 584

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 585  RQEDMPFTCEGIVPDIIINPHAI 607



 Score =  156 bits (394), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 75/168 (44%), Positives = 103/168 (61%)

Query: 1178 RITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV 1237
            R    ++V    K +    +++VL+++N E    +K+ +R TR P+IGDKF+SRHGQKG 
Sbjct: 520  RTHTRRDVSTPLKSTENGIVDQVLITTNHEGQKFVKIRVRSTRIPQIGDKFASRHGQKGT 579

Query: 1238 IGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGG 1297
            IG+   QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F  
Sbjct: 580  IGITYRQEDMPFTCEGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTD 639

Query: 1298 TKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKH 1345
              +  V   L + GY  +G ++ Y G TG  L+A +Y GP YYQ+LKH
Sbjct: 640  LTVESVSAFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKH 687



 Score =  111 bits (277), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 91/151 (60%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 39  EFNLTLAVKHQTITNGLEYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT 98

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM+ I+  +    +++ +  
Sbjct: 99  PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISDGSISAPVIEFLEE 158

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E +        SS     VFVNG+  G+
Sbjct: 159 WGLESL---EENAHSSVPCTKVFVNGVWMGV 186



 Score = 87.0 bits (214), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 47/121 (38%), Positives = 64/121 (52%), Gaps = 14/121 (11%)

Query: 706 VNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQ 765
           VN+G     A   +       TH EI P  +LG+CA I              +P+P HNQ
Sbjct: 308 VNDGEYDPAARLGASTHAHTWTHCEIHPSMILGICASI--------------IPFPDHNQ 353

Query: 766 APRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQ 825
           +PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  
Sbjct: 354 SPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNA 413

Query: 826 I 826
           I
Sbjct: 414 I 414


>gi|14601675|ref|NP_148216.1| DNA-directed RNA polymerase subunit B [Aeropyrum pernix K1]
 gi|5105547|dbj|BAA80860.1| DNA-directed RNA polymerase subunit B [Aeropyrum pernix K1]
          Length = 1169

 Score =  213 bits (541), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 112/270 (41%), Positives = 162/270 (60%), Gaps = 18/270 (6%)

Query: 915  VPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFH 974
            + Y  HNQ+PRNTYQ AM KQA+G    N + R+D+  Y L Y Q P+V+++ + I  ++
Sbjct: 692  IGYLEHNQSPRNTYQAAMAKQALGVYALNYRIRLDSHSYLLQYPQVPIVQTRMLDIMGYN 751

Query: 975  KLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRIL 1034
            + PAGQN  +A+MSY+GY+IEDALI NK S+D G  R   +R    +  +YP    DRI 
Sbjct: 752  ERPAGQNMVVAIMSYTGYNIEDALIFNKGSIDMGLARAYFFRVYTGIENEYPGGERDRIT 811

Query: 1035 GPLLEADTRKP--VYRHRA------LDQDGIVAPGEQICERQVLVNKSMPTISVS---AI 1083
             P       KP  VY +R       L+ DGIVAP  ++   ++L+ +  P   +     I
Sbjct: 812  LP-------KPDEVYDYRGAAAYAKLEADGIVAPETEVEGGEILIGRVSPPRFLGEGRVI 864

Query: 1084 SMATPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1143
            SMAT   ++  +  +      ++ V++S+  E   L+K+ +R  R PEIGDKF+SRHGQK
Sbjct: 865  SMATVRRRDTSIPMRLGEKGVVDMVVISTTVERNKLVKVRVRNLRIPEIGDKFASRHGQK 924

Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            GVIG+I  + DMP+ E GI PD+I+NPH +
Sbjct: 925  GVIGMIFPRYDMPYTEEGIEPDVILNPHAI 954



 Score =  177 bits (449), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 85/171 (49%), Positives = 120/171 (70%)

Query: 1197 LEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICP 1256
            ++ V++S+  E   L+K+ +R  R PEIGDKF+SRHGQKGVIG+I  + DMP+ E GI P
Sbjct: 886  VDMVVISTTVERNKLVKVRVRNLRIPEIGDKFASRHGQKGVIGMIFPRYDMPYTEEGIEP 945

Query: 1257 DIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQG 1316
            D+I+NPH  PSRMTVG+L+E +AGK G ++G + + T F    +  ++ EL++ GY+   
Sbjct: 946  DVILNPHAIPSRMTVGQLLEEIAGKLGAIKGRFVDATPFFKEDIDGLRIELLKEGYDPNA 1005

Query: 1317 KDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPT 1367
            +++ Y G TG+ +EA I  G  YYQ+L HMV DKIHAR+ G   +LTRQPT
Sbjct: 1006 REVMYDGRTGQIIEAPITIGVAYYQRLYHMVADKIHARATGRVHLLTRQPT 1056



 Score = 83.6 bits (205), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 53/146 (36%), Positives = 77/146 (52%), Gaps = 13/146 (8%)

Query: 192 MRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKV 251
           +R   I++ L  AI TGNW       +R G++Q L R ++IS L  + R+ S   + +  
Sbjct: 417 VRPTIISDRLKGAIATGNWG-----QDRTGISQQLDRTNWISLLSHLRRVISPLSRGQAH 471

Query: 252 SGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMY-NIGI---E 307
              R L GS WG  CP +TPEG  CGLVKNLAL  +I+   DE  + +I+  ++G+   E
Sbjct: 472 FEARDLHGSHWGRYCPFETPEGINCGLVKNLALSAYISVGVDESVVEEILVKDLGVAPLE 531

Query: 308 HIAMFNGEELSSPGVYL----VFVNG 329
            I     +    P + L    VF+NG
Sbjct: 532 RILEEAKQAGEPPEIMLKGTKVFING 557



 Score = 74.7 bits (182), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 70/135 (51%), Gaps = 15/135 (11%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKR 751
           F D + +G +E LD  E  ++ IA     +     TH+E+    ++GV A          
Sbjct: 641 FWDLVKQGVVEMLDPEEEQNALIAELPWEVTKE-HTHMELWVPAIVGVAAAT-------- 691

Query: 752 FHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTI 811
                 + Y  HNQ+PRNTYQ AM KQA+G    N + R+D+  Y L Y Q P+V+++ +
Sbjct: 692 ------IGYLEHNQSPRNTYQAAMAKQALGVYALNYRIRLDSHSYLLQYPQVPIVQTRML 745

Query: 812 RITNFHKLPAGKCQI 826
            I  +++ PAG+  +
Sbjct: 746 DIMGYNERPAGQNMV 760



 Score = 47.4 bits (111), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 9/90 (10%)

Query: 312 FNGEELSSPGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHECRLRDLTYSAP 371
           F   E+  P V +VF            KE    E+ ESF+  R+ TP ECR+R +TYSAP
Sbjct: 75  FEEHEIHLPDVKIVFGK-------ARFKEPMAREVIESFD--RRVTPFECRVRGITYSAP 125

Query: 372 ITVDIEYTRGSQRVVRSDLVIGRMPIMLQS 401
           + V++   + +      ++ I   P+M++S
Sbjct: 126 LMVEMTIVQDNMIEKTREVKIADFPVMVKS 155



 Score = 40.4 bits (93), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 36/68 (52%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A +FL +  + H+         KA +LA M  R++         DD+D+ GNKRL LAG 
Sbjct: 321 AEEFLDTQLLPHLGNRPEDRIKKAYFLAEMANRVLQLYLGKRGEDDKDFLGNKRLRLAGD 380

Query: 516 LLSLMFED 523
           L++ +F +
Sbjct: 381 LIAELFRE 388


>gi|120561249|gb|ABM27009.1| RNA polymerase II second largest subunit, partial [Mucor hiemalis]
          Length = 884

 Score =  213 bits (541), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 100/263 (38%), Positives = 160/263 (60%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL   L Y Q+P+  ++++    F
Sbjct: 540  IIPFPDHNQSPRNTYQSAMGKQAMGVYLTNFQTRMDTLANILYYPQKPLTTTRSMEFLRF 599

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R L +R      K+      +  
Sbjct: 600  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSLFFRTYMDAEKKAGMMFMEEF 659

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  ++  R     +  L+ DG++APG ++    +++ K+ P  + S        T   
Sbjct: 660  EKPTRDSTLRLKHGTYEKLEDDGLIAPGTRVSGDDIIIGKTAPIPADSEELGQRTTTHNK 719

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++     + +    +++V++++N +    +K+ +R TR P++GDKF+SRHGQKG IG+  
Sbjct: 720  RDASTPLRSTETGIVDQVMLTTNQDGLKFVKVRVRSTRVPQMGDKFASRHGQKGTIGMTY 779

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QED PF+  GI PD+I+NPH +
Sbjct: 780  RQEDFPFSAEGITPDLIINPHAI 802



 Score =  155 bits (391), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 67/151 (44%), Positives = 99/151 (65%)

Query: 1197 LEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICP 1256
            +++V++++N +    +K+ +R TR P++GDKF+SRHGQKG IG+   QED PF+  GI P
Sbjct: 734  VDQVMLTTNQDGLKFVKVRVRSTRVPQMGDKFASRHGQKGTIGMTYRQEDFPFSAEGITP 793

Query: 1257 DIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQG 1316
            D+I+NPH  PSRMT+G +IE L GK   + GN  + T F    +  + + L   GY  +G
Sbjct: 794  DLIINPHAIPSRMTIGHMIECLLGKVSTLTGNEGDATPFTDVTVEAISQALQAQGYQSRG 853

Query: 1317 KDIFYSGITGEALEAYIYSGPVYYQKLKHMV 1347
             ++ Y+G TG  L   ++ GP YYQ+LKHMV
Sbjct: 854  FEVMYNGFTGRKLNVQVFLGPTYYQRLKHMV 884



 Score =  117 bits (293), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 67/179 (37%), Positives = 109/179 (60%), Gaps = 10/179 (5%)

Query: 161 LFYLKYLDIHVGIADKIIPKIKAA-QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKME 218
           LF L +  +   +A  +   I+++ +F++   ++ +TITN L  ++ TGNW   ++    
Sbjct: 212 LFRLLFKKLTKDVAKYLQKCIESSREFNLTLAVKSNTITNGLKYSLATGNWGDQKKAAQA 271

Query: 219 RQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGL 278
           R GV+QVL+R ++ S L  + R N+   +  K++ PR L  + WG++CP++TPEG+ACGL
Sbjct: 272 RAGVSQVLNRYTFASTLSHLRRCNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGL 331

Query: 279 VKNLALMTHITTENDEKNMLKIMYNIGIEHIAMFNGEELSSPGVY---LVFVNGILAGI 334
           VKNLALM++I+  +    +  IM+   +E  AM N EELS+  +     VFVNG+  GI
Sbjct: 332 VKNLALMSYISVGSAATPL--IMF---LEEWAMENLEELSATSIADATKVFVNGVWIGI 385



 Score = 96.3 bits (238), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/193 (31%), Positives = 86/193 (44%), Gaps = 57/193 (29%)

Query: 677 RPTFLNMHQFLGFKR--------------FDDFLYEGKIEYLDVNEGNDSHIAV------ 716
           RP FL  +Q L   R              + D + +G +EY+D +E   + I +      
Sbjct: 431 RPLFLVENQQLRLNREHIMRIQDTEDDFGWQDMIADGIVEYVDADEEETAMICMTPEDLA 490

Query: 717 -----------------------SESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFH 753
                                  S++G      TH EI P  +LG+CA I          
Sbjct: 491 ESRMTAQYGAPLQETRDLASRVKSQTGSYSHTWTHCEIHPSMILGICASI---------- 540

Query: 754 SPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRI 813
               +P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL   L Y Q+P+  ++++  
Sbjct: 541 ----IPFPDHNQSPRNTYQSAMGKQAMGVYLTNFQTRMDTLANILYYPQKPLTTTRSMEF 596

Query: 814 TNFHKLPAGKCQI 826
             F +LPAG+  I
Sbjct: 597 LRFRELPAGQNAI 609



 Score = 55.1 bits (131), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 14/114 (12%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A + L    + H+         K+ +   MI R++LA  +   LDDRD+YG KR++LAG 
Sbjct: 148 ASEILQKELLPHVGTAYKTETRKSYFFGYMIHRLLLAALERRELDDRDHYGKKRMDLAGV 207

Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYGN 555
           L+S +F  +FK+   ++           +E NL+  V    + +G  + L  GN
Sbjct: 208 LMSGLFRLLFKKLTKDVAKYLQKCIESSREFNLTLAVKSNTITNGLKYSLATGN 261


>gi|354992135|gb|AER45774.1| RNA polymerase II second largest subunit [Pleurotus ostreatus]
 gi|354992139|gb|AER45776.1| RNA polymerase II second largest subunit [Pleurotus ostreatus]
          Length = 687

 Score =  213 bits (541), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 160/263 (60%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 345  IIPFPDHNQSPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKF 404

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 405  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSVDRGLFRSMYYRSYMDLEKKSGIQQLEEF 464

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 465  EKPSRDNTLRMKHGTYDKLENDGLIAPGTGVVGEDIIIGKTAPIPPDSEELGQRTRTHTR 524

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++N E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 525  RDVSTPLKSTENGIVDQVLITTNHEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 584

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 585  RQEDMPFTCEGIVPDIIINPHAI 607



 Score =  156 bits (394), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 75/168 (44%), Positives = 103/168 (61%)

Query: 1178 RITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV 1237
            R    ++V    K +    +++VL+++N E    +K+ +R TR P+IGDKF+SRHGQKG 
Sbjct: 520  RTHTRRDVSTPLKSTENGIVDQVLITTNHEGQKFVKIRVRSTRIPQIGDKFASRHGQKGT 579

Query: 1238 IGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGG 1297
            IG+   QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F  
Sbjct: 580  IGITYRQEDMPFTCEGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTD 639

Query: 1298 TKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKH 1345
              +  V   L + GY  +G ++ Y G TG  L+A +Y GP YYQ+LKH
Sbjct: 640  LTVESVSAFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKH 687



 Score =  111 bits (277), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 91/151 (60%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 39  EFNLTLAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT 98

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM+ I+  +    +++ +  
Sbjct: 99  PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSISAPVIEFLEE 158

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E +        SS     VFVNG+  G+
Sbjct: 159 WGLESL---EENAHSSIPCTKVFVNGVWMGV 186



 Score = 88.2 bits (217), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 47/121 (38%), Positives = 65/121 (53%), Gaps = 14/121 (11%)

Query: 706 VNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQ 765
           VN+G     A  ++       TH EI P  +LG+CA I              +P+P HNQ
Sbjct: 308 VNDGEYDPAARLKASTHAHTWTHCEIHPSMILGICASI--------------IPFPDHNQ 353

Query: 766 APRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQ 825
           +PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  
Sbjct: 354 SPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNA 413

Query: 826 I 826
           I
Sbjct: 414 I 414


>gi|354992109|gb|AER45761.1| RNA polymerase II second largest subunit [Pleurotus ostreatus]
          Length = 687

 Score =  213 bits (541), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 160/263 (60%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 345  IIPFPDHNQSPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKF 404

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 405  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSVDRGLFRSMYYRSYMDLEKKSGIQQLEEF 464

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 465  EKPSRDNTLRMKHGTYDKLENDGLIAPGTGVVGEDIIIGKTAPIPPDSEELGQRTRTHTR 524

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++N E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 525  RDVSTPLKSTENGIVDQVLITTNHEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 584

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 585  RQEDMPFTCEGIVPDIIINPHAI 607



 Score =  156 bits (394), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 75/168 (44%), Positives = 103/168 (61%)

Query: 1178 RITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV 1237
            R    ++V    K +    +++VL+++N E    +K+ +R TR P+IGDKF+SRHGQKG 
Sbjct: 520  RTHTRRDVSTPLKSTENGIVDQVLITTNHEGQKFVKIRVRSTRIPQIGDKFASRHGQKGT 579

Query: 1238 IGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGG 1297
            IG+   QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F  
Sbjct: 580  IGITYRQEDMPFTCEGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTD 639

Query: 1298 TKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKH 1345
              +  V   L + GY  +G ++ Y G TG  L+A +Y GP YYQ+LKH
Sbjct: 640  LTVESVSAFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKH 687



 Score =  112 bits (280), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 92/151 (60%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 39  EFNLTLAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT 98

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM+ I+  +   ++++ +  
Sbjct: 99  PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSISASVIEFLEE 158

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E +        SS     VFVNG+  G+
Sbjct: 159 WGLESL---EENAHSSIPCTKVFVNGVWMGV 186



 Score = 88.2 bits (217), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 47/121 (38%), Positives = 65/121 (53%), Gaps = 14/121 (11%)

Query: 706 VNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQ 765
           VN+G     A  ++       TH EI P  +LG+CA I              +P+P HNQ
Sbjct: 308 VNDGEYDPAARLKASTHAHTWTHCEIHPSMILGICASI--------------IPFPDHNQ 353

Query: 766 APRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQ 825
           +PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  
Sbjct: 354 SPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNA 413

Query: 826 I 826
           I
Sbjct: 414 I 414


>gi|83415497|gb|ABC17956.1| RNA polymerase II second largest subunit, partial [Rozella allomycis]
          Length = 697

 Score =  213 bits (541), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 102/263 (38%), Positives = 160/263 (60%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL   L Y Q+P+V ++++   +F
Sbjct: 322  IIPFPDHNQSPRNTYQSAMGKQAMGINSTNFQRRMDTLNNILFYPQKPLVTTRSMEYLHF 381

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++++DRG  R + Y+      K+      +  
Sbjct: 382  RELPAGQNAIVAIACYSGYNQEDSVIMNQSAIDRGLFRSICYKTYTDEEKKVGTLQVEEF 441

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
            + P      R     +  L+ DG+VAPG +I    +++ K++P    S       +T   
Sbjct: 442  MKPTFTTTVRMRHGTYDKLEDDGLVAPGIKISGEDIIIGKTVPIPDDSDELGQRTSTHTR 501

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++     K +    +++V++S+N++    +K+ +   R P++GDKF+SRHGQKG +G+  
Sbjct: 502  RDASTPLKSNEHGIIDQVMISTNADGYRFVKIRVSSVRVPQMGDKFASRHGQKGTVGITY 561

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 562  RQEDMPFTAEGITPDIIINPHAI 584



 Score =  186 bits (473), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 83/176 (47%), Positives = 119/176 (67%)

Query: 1197 LEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICP 1256
            +++V++S+N++    +K+ +   R P++GDKF+SRHGQKG +G+   QEDMPF   GI P
Sbjct: 516  IDQVMISTNADGYRFVKIRVSSVRVPQMGDKFASRHGQKGTVGITYRQEDMPFTAEGITP 575

Query: 1257 DIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQG 1316
            DII+NPH  PSRMT+G L+E L GK   + G+  + T F    +  + E L++ GY  +G
Sbjct: 576  DIIINPHAIPSRMTIGHLVECLLGKVSAITGDEGDATPFTDVTVESISETLLKCGYQSRG 635

Query: 1317 KDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
             ++ Y+G +G  L A I+ GP YYQ+LKHMV DKIHAR+RGP  +LTRQP   R +
Sbjct: 636  FEVLYNGHSGRKLNAQIFIGPTYYQRLKHMVDDKIHARARGPVQILTRQPVEGRSR 691



 Score =  112 bits (281), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 56/150 (37%), Positives = 94/150 (62%), Gaps = 3/150 (2%)

Query: 186 FDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINSQ 244
           F++   ++ +TITN L  +I TGNW  ++  ME R GV+QVL+R +Y S L  + R+N+ 
Sbjct: 40  FNLTLAVKSNTITNGLRYSIATGNWGDQKKAMESRAGVSQVLNRYTYASTLSHLRRVNTP 99

Query: 245 FEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNI 304
             +  K++ PR L  S WGM+CP++TPEG+ACGLVKNL+LM++I+       ++  +   
Sbjct: 100 IGRDGKLAKPRQLHNSHWGMVCPAETPEGQACGLVKNLSLMSYISVGTSPAPIIDALKIY 159

Query: 305 GIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            +E++A  +   + +  +  +F+NG   G+
Sbjct: 160 QMEYLAEISPSSIGN--LTKIFMNGNWIGV 187



 Score =  103 bits (257), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 60/154 (38%), Positives = 81/154 (52%), Gaps = 23/154 (14%)

Query: 681 LNMHQFLGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIR--------PGVTTHLEIA 732
           L      GF  + + L  G +EYLDV E   S I ++   +         P   TH EI 
Sbjct: 253 LQQRDITGFG-WQNLLENGVVEYLDVEEEETSMICMTPEDLLEAKNITDFPTKYTHCEIH 311

Query: 733 PFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRID 792
           P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N Q R+D
Sbjct: 312 PSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGINSTNFQRRMD 357

Query: 793 TLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
           TL   L Y Q+P+V ++++   +F +LPAG+  I
Sbjct: 358 TLNNILFYPQKPLVTTRSMEYLHFRELPAGQNAI 391


>gi|354992143|gb|AER45778.1| RNA polymerase II second largest subunit [Pleurotus ostreatus]
          Length = 687

 Score =  213 bits (541), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 160/263 (60%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 345  IIPFPDHNQSPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKF 404

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 405  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSVDRGLFRSMYYRSYMDLEKKSGIQQLEEF 464

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 465  EKPSRDNTLRMKHGTYDKLENDGLIAPGTGVVGEDIIIGKTAPIPPDSEELGQRTRTHTR 524

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++N E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 525  RDVSTPLKSTENGIVDQVLITTNHEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 584

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 585  RQEDMPFTCEGIVPDIIINPHAI 607



 Score =  156 bits (394), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 75/168 (44%), Positives = 103/168 (61%)

Query: 1178 RITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV 1237
            R    ++V    K +    +++VL+++N E    +K+ +R TR P+IGDKF+SRHGQKG 
Sbjct: 520  RTHTRRDVSTPLKSTENGIVDQVLITTNHEGQKFVKIRVRSTRIPQIGDKFASRHGQKGT 579

Query: 1238 IGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGG 1297
            IG+   QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F  
Sbjct: 580  IGITYRQEDMPFTCEGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTD 639

Query: 1298 TKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKH 1345
              +  V   L + GY  +G ++ Y G TG  L+A +Y GP YYQ+LKH
Sbjct: 640  LTVESVSAFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKH 687



 Score =  113 bits (283), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 58/151 (38%), Positives = 91/151 (60%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +FD+   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 39  EFDLTLAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT 98

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM+ I+  +    +++ +  
Sbjct: 99  PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSISAPVIEFLEE 158

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E +        SS     VFVNG+  G+
Sbjct: 159 WGLESL---EENAHSSVPCTKVFVNGVWMGV 186



 Score = 88.2 bits (217), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 47/121 (38%), Positives = 65/121 (53%), Gaps = 14/121 (11%)

Query: 706 VNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQ 765
           VN+G     A  ++       TH EI P  +LG+CA I              +P+P HNQ
Sbjct: 308 VNDGEYDPAARLKASTHAHTWTHCEIHPSMILGICASI--------------IPFPDHNQ 353

Query: 766 APRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQ 825
           +PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  
Sbjct: 354 SPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNA 413

Query: 826 I 826
           I
Sbjct: 414 I 414


>gi|410610281|gb|AFV74909.1| RNA polymerase II second largest subunit, partial [Balanophora
            laxiflora]
          Length = 569

 Score =  213 bits (541), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 109/270 (40%), Positives = 166/270 (61%), Gaps = 19/270 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 196  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQYRMDTLAYVLYYPQKPLVTTRAMEHLHF 255

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L +R+ +           ++ 
Sbjct: 256  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR---------DEEKK 306

Query: 1034 LGPLLEADTRKPV------YRHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            +G L++ D  +P        RH +   LD DG+  PG ++    V++ K+ P        
Sbjct: 307  MGTLVKEDFGRPDRADTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPITQDDNQG 366

Query: 1085 MATP-EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1143
             A+    ++   S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQK
Sbjct: 367  QASRYTRQDHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQK 426

Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            G +G+   QEDMP+   GI PDII+NPH +
Sbjct: 427  GTVGMTYTQEDMPWTVEGITPDIIVNPHAI 456



 Score =  178 bits (451), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 85/184 (46%), Positives = 119/184 (64%)

Query: 1187 VSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQED 1246
             S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   QED
Sbjct: 378  TSLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 437

Query: 1247 MPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEE 1306
            MP+   GI PDII+NPH  PSRMT+G+LIE + GK     G   + T F    + ++ + 
Sbjct: 438  MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 497

Query: 1307 LIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQP 1366
            L + GY  +G +  Y+G TG  L + I+ GP YYQ+LKHMV DKIH+R RGP  +LTRQP
Sbjct: 498  LHKCGYQMRGFETMYNGHTGRRLTSLIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP 557

Query: 1367 TGRR 1370
               R
Sbjct: 558  AEGR 561



 Score =  101 bits (252), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/141 (39%), Positives = 78/141 (55%), Gaps = 24/141 (17%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPG----------VTTHLEIAPFTLLGVCA 741
           + D + +G IEY+D  E   + I+++ + +  G            TH EI P  +LGVCA
Sbjct: 135 WHDLVAKGFIEYIDTEEEETTMISMTINDLVSGRINPEEAYSETYTHCEIHPSLILGVCA 194

Query: 742 GIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYA 801
            I              +P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y 
Sbjct: 195 SI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQYRMDTLAYVLYYP 240

Query: 802 QRPMVESKTIRITNFHKLPAG 822
           Q+P+V ++ +   +F +LPAG
Sbjct: 241 QKPLVTTRAMEHLHFRQLPAG 261



 Score = 44.7 bits (104), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 34/63 (53%), Gaps = 8/63 (12%)

Query: 275 ACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMFNGEELSS---PGVYLVFVNGIL 331
           ACGLVKNLALM HIT  +    +L+ +   G E     N EE+S    P    +FVNG  
Sbjct: 1   ACGLVKNLALMVHITVGSAAYPILEFLEEWGTE-----NFEEISPAVIPTATKIFVNGCW 55

Query: 332 AGI 334
            GI
Sbjct: 56  VGI 58


>gi|88976144|gb|ABD59037.1| RNA polymerase II second largest subunit, partial [Inocybe cookei]
          Length = 688

 Score =  213 bits (541), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 105/263 (39%), Positives = 159/263 (60%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 346  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKF 405

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 406  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEF 465

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  L+ DG +APG  +    +++ K+ P    S        T   
Sbjct: 466  EKPTRDTTLRMKHGTYDKLEDDGFIAPGTGVRGEDIIIGKTAPIPPDSEELGQRTRTHTR 525

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ +R  R P+IGDKF+SRHGQKG IG+  
Sbjct: 526  RDVSTPLKSTESGSVDQVLITTNSEGQKFVKVRVRSIRIPQIGDKFASRHGQKGTIGITY 585

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PD+I+NPH +
Sbjct: 586  RQEDMPFTAEGIVPDLIINPHAI 608



 Score =  155 bits (393), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 73/163 (44%), Positives = 102/163 (62%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++NSE    +K+ +R  R P+IGDKF+SRHGQKG IG+  
Sbjct: 526  RDVSTPLKSTESGSVDQVLITTNSEGQKFVKVRVRSIRIPQIGDKFASRHGQKGTIGITY 585

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PD+I+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 586  RQEDMPFTAEGIVPDLIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVES 645

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKH 1345
            V   L + GY  +G ++ Y G TG  L+A +Y GP YYQ+LKH
Sbjct: 646  VSTFLRQRGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKH 688



 Score =  112 bits (279), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 90/151 (59%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKM-ERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 40  EFNLALAVKHQTITNGLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNT 99

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM  I+  +    +++ +  
Sbjct: 100 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMACISVGSFSGPVIEFLEE 159

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E +        SS     VFVNG+  G+
Sbjct: 160 WGLESL---EENAHSSTAFTKVFVNGVWIGV 187



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/177 (33%), Positives = 88/177 (49%), Gaps = 22/177 (12%)

Query: 706 VNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQ 765
            N+G     A  ++G      TH EI P  +LG+CA I              +P+P HNQ
Sbjct: 309 ANDGEFDPAARLKAGTHAHTWTHCEIHPSMILGICASI--------------IPFPDHNQ 354

Query: 766 APRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQ 825
           +PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  
Sbjct: 355 SPRNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNA 414

Query: 826 ISPGGAEELTARESCHEVLKIISFSISVAVFDSVWLG-----DVKQGVHQLSEEKEP 877
           I    A    +  +  + + +   SI   +F S++       + K GV QL E ++P
Sbjct: 415 IV---AILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKP 468


>gi|312985608|gb|ADR31265.1| RNA polymerase II [Fusarium sporotrichioides]
 gi|312985610|gb|ADR31266.1| RNA polymerase II [Fusarium sporotrichioides]
 gi|312985612|gb|ADR31267.1| RNA polymerase II [Fusarium sporotrichioides]
 gi|312985614|gb|ADR31268.1| RNA polymerase II [Fusarium sporotrichioides]
 gi|312985616|gb|ADR31269.1| RNA polymerase II [Fusarium sporotrichioides]
 gi|312985618|gb|ADR31270.1| RNA polymerase II [Fusarium sporotrichioides]
 gi|312985620|gb|ADR31271.1| RNA polymerase II [Fusarium sporotrichioides]
 gi|312985622|gb|ADR31272.1| RNA polymerase II [Fusarium sporotrichioides]
 gi|312985624|gb|ADR31273.1| RNA polymerase II [Fusarium sporotrichioides]
 gi|312985632|gb|ADR31277.1| RNA polymerase II [Fusarium sporotrichioides]
 gi|312985634|gb|ADR31278.1| RNA polymerase II [Fusarium sporotrichioides]
 gi|312985638|gb|ADR31280.1| RNA polymerase II [Fusarium sporotrichioides]
 gi|312985640|gb|ADR31281.1| RNA polymerase II [Fusarium langsethiae]
 gi|312985642|gb|ADR31282.1| RNA polymerase II [Fusarium langsethiae]
 gi|312985644|gb|ADR31283.1| RNA polymerase II [Fusarium langsethiae]
 gi|312985646|gb|ADR31284.1| RNA polymerase II [Fusarium langsethiae]
 gi|312985648|gb|ADR31285.1| RNA polymerase II [Fusarium langsethiae]
 gi|312985650|gb|ADR31286.1| RNA polymerase II [Fusarium langsethiae]
 gi|312985652|gb|ADR31287.1| RNA polymerase II [Fusarium langsethiae]
 gi|312985654|gb|ADR31288.1| RNA polymerase II [Fusarium langsethiae]
 gi|312985656|gb|ADR31289.1| RNA polymerase II [Fusarium sp. YM-2010]
 gi|312985658|gb|ADR31290.1| RNA polymerase II [Fusarium sp. YM-2010]
 gi|312985660|gb|ADR31291.1| RNA polymerase II [Fusarium sp. YM-2010]
 gi|312985662|gb|ADR31292.1| RNA polymerase II [Fusarium sp. YM-2010]
 gi|312985664|gb|ADR31293.1| RNA polymerase II [Fusarium sp. YM-2010]
 gi|312985666|gb|ADR31294.1| RNA polymerase II [Fusarium sp. YM-2010]
 gi|312985668|gb|ADR31295.1| RNA polymerase II [Fusarium sp. YM-2010]
 gi|312985670|gb|ADR31296.1| RNA polymerase II [Fusarium sp. YM-2010]
 gi|312985672|gb|ADR31297.1| RNA polymerase II [Fusarium sp. YM-2010]
 gi|312985674|gb|ADR31298.1| RNA polymerase II [Fusarium sp. YM-2010]
 gi|312985676|gb|ADR31299.1| RNA polymerase II [Fusarium sp. YM-2010]
 gi|312985678|gb|ADR31300.1| RNA polymerase II [Fusarium sp. YM-2010]
 gi|312985680|gb|ADR31301.1| RNA polymerase II [Fusarium sporotrichioides]
 gi|312985682|gb|ADR31302.1| RNA polymerase II [Fusarium langsethiae]
 gi|312985684|gb|ADR31303.1| RNA polymerase II [Fusarium langsethiae]
 gi|312985686|gb|ADR31304.1| RNA polymerase II [Fusarium langsethiae]
 gi|312985688|gb|ADR31305.1| RNA polymerase II [Fusarium langsethiae]
          Length = 612

 Score =  213 bits (541), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 101/263 (38%), Positives = 162/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 279  IIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSMEFLKF 338

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L +R+     K+      +  
Sbjct: 339  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYSDQEKKVGLNYTEVF 398

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  LD+DGIVAPG ++    +++ K+ P    +        T + 
Sbjct: 399  EKPFQQTTLRMKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAPIDQENQDLGTRTQTHQR 458

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            +++    + +    +++V+++ N+++   +K+ +R T+ P+IGDKF+SRHGQKG IG+  
Sbjct: 459  RDISTPLRSTENGIVDQVILTVNADNVKYVKVRVRTTKIPQIGDKFASRHGQKGTIGVTY 518

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF+  G+ PDII+NPH +
Sbjct: 519  RQEDMPFSREGLTPDIIINPHAI 541



 Score =  135 bits (341), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 62/140 (44%), Positives = 92/140 (65%)

Query: 1197 LEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICP 1256
            +++V+++ N+++   +K+ +R T+ P+IGDKF+SRHGQKG IG+   QEDMPF+  G+ P
Sbjct: 473  VDQVILTVNADNVKYVKVRVRTTKIPQIGDKFASRHGQKGTIGVTYRQEDMPFSREGLTP 532

Query: 1257 DIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQG 1316
            DII+NPH  PSRMT+  LIE L  K   +EG   + T F    +  V E L +HGY  +G
Sbjct: 533  DIIINPHAIPSRMTIAHLIECLLSKVSTLEGMEGDATPFTDVTVDSVSELLRKHGYQSRG 592

Query: 1317 KDIFYSGITGEALEAYIYSG 1336
             ++ Y+G TG  L A ++ G
Sbjct: 593  FEVMYNGHTGRKLRAQVFFG 612



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 263 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGFFLTN 308

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 309 YSRRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 348



 Score = 77.8 bits (190), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 58/93 (62%), Gaps = 2/93 (2%)

Query: 242 NSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIM 301
           N+   +  K++ PR L  + WG++CP++TPEG+ACGLVKNL+LM +++  +  + +++ M
Sbjct: 2   NTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSPAEPLIEFM 61

Query: 302 YNIGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            N G+E +  +  E    P    VFVNG   G+
Sbjct: 62  INRGMEVVEEY--EPTRYPHATKVFVNGSWVGV 92


>gi|89274922|gb|ABD65902.1| RNA polymerase II second largest subunit, partial [Tremellodendron
            pallidum]
          Length = 716

 Score =  213 bits (541), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 107/263 (40%), Positives = 157/263 (59%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++ +    F
Sbjct: 341  IIPFPDHNQSPRNTYQSAMGKQAMGISLSNFLLRMDTMANILYYPQKPLATTRALEYLKF 400

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + Y++   V K       +  
Sbjct: 401  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGXFRSIYYKSYMDVEKTTGQVILEEF 460

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  E   R     +  LD DGI+APG  +    +L+ K+ P    S       +T   
Sbjct: 461  EKPSRENTXRMKHGNYDKLDDDGIIAPGTNVIGEDILIGKTAPLPEGSEELGQRKSTHTR 520

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    ++ V+VS N++    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 521  RDVSTPLKSTESGIVDHVIVSLNADGHRFVKIRVRSTRVPQIGDKFASRHGQKGTIGVTY 580

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PD+++NPH +
Sbjct: 581  RQEDMPFTADGITPDLVINPHAI 603



 Score =  182 bits (463), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 86/188 (45%), Positives = 119/188 (63%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    ++ V+VS N++    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 521  RDVSTPLKSTESGIVDHVIVSLNADGHRFVKIRVRSTRVPQIGDKFASRHGQKGTIGVTY 580

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PD+++NPH  PSRMT+G L+E L  K   + G   + T F    +  
Sbjct: 581  RQEDMPFTADGITPDLVINPHAIPSRMTIGHLVECLLSKVATLLGQDGDATPFTDLTVEG 640

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
            V   L   G+  +G ++ Y G TG  L+A +Y GP YYQ+LKHMV+DKIH+R+RGP  +L
Sbjct: 641  VSAVLKERGFQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMVEDKIHSRARGPVQIL 700

Query: 1363 TRQPTGRR 1370
            TRQP   R
Sbjct: 701  TRQPVEGR 708



 Score =  108 bits (269), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 55/150 (36%), Positives = 91/150 (60%), Gaps = 4/150 (2%)

Query: 186 FDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINSQ 244
           FD+   ++  TI+N L  ++ TGNW  ++  M  + GV+QVL+R ++ S L  + R N+ 
Sbjct: 42  FDVSRAIKVATISNGLKYSLATGNWGDQQHAMSSKAGVSQVLNRYTFASTLSHLRRCNTP 101

Query: 245 FEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNI 304
             +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM  I+  +    + + +   
Sbjct: 102 LGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMACISVGSYSAPVGEFLDEW 161

Query: 305 GIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
           G+E  ++    + ++P    VFVNG+  G+
Sbjct: 162 GLE--SLEENAQAATPCTK-VFVNGVWMGV 188



 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 73/163 (44%), Gaps = 42/163 (25%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVT------------------------- 726
           + D +++G IE LD  E     I +S   +    T                         
Sbjct: 262 WSDLIHDGVIELLDAEEEETVMICMSPEDLEAARTQADTTYHTESAAPDPAQRVKTVIKA 321

Query: 727 ---THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCI 783
              +H EI P  +LGVCA I              +P+P HNQ+PRNTYQ AMGKQAMG  
Sbjct: 322 HAWSHCEIHPSMILGVCASI--------------IPFPDHNQSPRNTYQSAMGKQAMGIS 367

Query: 784 GYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
             N   R+DT+   L Y Q+P+  ++ +    F +LPAG+  I
Sbjct: 368 LSNFLLRMDTMANILYYPQKPLATTRALEYLKFRELPAGQNAI 410


>gi|354992121|gb|AER45767.1| RNA polymerase II second largest subunit [Pleurotus ostreatus]
          Length = 687

 Score =  213 bits (541), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 160/263 (60%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 345  IIPFPDHNQSPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKF 404

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 405  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSVDRGLFRSMYYRSYMDLEKKSGIQQLEEF 464

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 465  EKPSRDNTLRMKHGTYDKLENDGLIAPGTGVVGEDIIIGKTAPIPPDSEELGQRTRTHTR 524

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++N E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 525  RDVSTPLKSTENGIVDQVLITTNHEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 584

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 585  RQEDMPFTCEGIVPDIIINPHAI 607



 Score =  156 bits (394), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 75/168 (44%), Positives = 103/168 (61%)

Query: 1178 RITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV 1237
            R    ++V    K +    +++VL+++N E    +K+ +R TR P+IGDKF+SRHGQKG 
Sbjct: 520  RTHTRRDVSTPLKSTENGIVDQVLITTNHEGQKFVKIRVRSTRIPQIGDKFASRHGQKGT 579

Query: 1238 IGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGG 1297
            IG+   QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F  
Sbjct: 580  IGITYRQEDMPFTCEGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTD 639

Query: 1298 TKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKH 1345
              +  V   L + GY  +G ++ Y G TG  L+A +Y GP YYQ+LKH
Sbjct: 640  LTVESVSAFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKH 687



 Score =  111 bits (278), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 91/151 (60%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 39  EFNLTLAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT 98

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM+ I+  +    +++ +  
Sbjct: 99  PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSISAPVIEFLEE 158

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E +        SS     VFVNG+  G+
Sbjct: 159 WGLESL---EENAHSSVPCTKVFVNGVWMGV 186



 Score = 88.2 bits (217), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 47/121 (38%), Positives = 65/121 (53%), Gaps = 14/121 (11%)

Query: 706 VNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQ 765
           VN+G     A  ++       TH EI P  +LG+CA I              +P+P HNQ
Sbjct: 308 VNDGEYDPAARLKASTHAHTWTHCEIHPSMILGICASI--------------IPFPDHNQ 353

Query: 766 APRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQ 825
           +PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  
Sbjct: 354 SPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNA 413

Query: 826 I 826
           I
Sbjct: 414 I 414


>gi|312985628|gb|ADR31275.1| RNA polymerase II [Fusarium sporotrichioides]
          Length = 612

 Score =  213 bits (541), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 101/263 (38%), Positives = 162/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 279  IIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSMEFLKF 338

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L +R+     K+      +  
Sbjct: 339  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYSDQEKKVGLNYTEVF 398

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  LD+DGIVAPG ++    +++ K+ P    +        T + 
Sbjct: 399  EKPFQQTTLRMKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAPIDQENQDLGTRTQTHQR 458

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            +++    + +    +++V+++ N+++   +K+ +R T+ P+IGDKF+SRHGQKG IG+  
Sbjct: 459  RDISTPLRSTENGIVDQVILTVNADNVKYVKVRVRTTKIPQIGDKFASRHGQKGTIGVTY 518

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF+  G+ PDII+NPH +
Sbjct: 519  RQEDMPFSREGLTPDIIINPHAI 541



 Score =  135 bits (341), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 62/140 (44%), Positives = 92/140 (65%)

Query: 1197 LEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICP 1256
            +++V+++ N+++   +K+ +R T+ P+IGDKF+SRHGQKG IG+   QEDMPF+  G+ P
Sbjct: 473  VDQVILTVNADNVKYVKVRVRTTKIPQIGDKFASRHGQKGTIGVTYRQEDMPFSREGLTP 532

Query: 1257 DIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQG 1316
            DII+NPH  PSRMT+  LIE L  K   +EG   + T F    +  V E L +HGY  +G
Sbjct: 533  DIIINPHAIPSRMTIAHLIECLLSKVSTLEGMEGDATPFTDVTVDSVSELLRKHGYQSRG 592

Query: 1317 KDIFYSGITGEALEAYIYSG 1336
             ++ Y+G TG  L A ++ G
Sbjct: 593  FEVMYNGHTGRKLRAQVFFG 612



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 263 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGFFLTN 308

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 309 YSRRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 348



 Score = 77.8 bits (190), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 58/93 (62%), Gaps = 2/93 (2%)

Query: 242 NSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIM 301
           N+   +  K++ PR L  + WG++CP++TPEG+ACGLVKNL+LM +++  +  + +++ M
Sbjct: 2   NTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSPAEPLIEFM 61

Query: 302 YNIGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            N G+E +  +  E    P    VFVNG   G+
Sbjct: 62  INRGMEVVEEY--EPTRYPHATKVFVNGSWVGV 92


>gi|379773375|gb|AFD18893.1| RNA polymerase II second largest subunit, partial [Pleurotus eryngii]
          Length = 687

 Score =  213 bits (541), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 160/263 (60%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 345  IIPFPDHNQSPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKF 404

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 405  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSVDRGLFRSMYYRSYMDLEKKSGIQQLEEF 464

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 465  EKPSRDNTLRMKHGTYDKLENDGLIAPGTGVVGEDIIIGKTAPIPPDSEELGQRTRTHTR 524

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++N E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 525  RDVSTPLKSTENGIVDQVLITTNHEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 584

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 585  RQEDMPFTCEGIVPDIIINPHAI 607



 Score =  156 bits (394), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 75/168 (44%), Positives = 103/168 (61%)

Query: 1178 RITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV 1237
            R    ++V    K +    +++VL+++N E    +K+ +R TR P+IGDKF+SRHGQKG 
Sbjct: 520  RTHTRRDVSTPLKSTENGIVDQVLITTNHEGQKFVKIRVRSTRIPQIGDKFASRHGQKGT 579

Query: 1238 IGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGG 1297
            IG+   QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F  
Sbjct: 580  IGITYRQEDMPFTCEGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTD 639

Query: 1298 TKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKH 1345
              +  V   L + GY  +G ++ Y G TG  L+A +Y GP YYQ+LKH
Sbjct: 640  LTVESVSAFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKH 687



 Score =  111 bits (277), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 91/151 (60%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 39  EFNLTLAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYAYASTLSHLRRCNT 98

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM+ I+  +    +++ +  
Sbjct: 99  PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSISAPVIEFLEE 158

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E +        SS     VFVNG+  G+
Sbjct: 159 WGLESL---EENAHSSIPCTKVFVNGVWMGV 186



 Score = 88.2 bits (217), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 47/121 (38%), Positives = 65/121 (53%), Gaps = 14/121 (11%)

Query: 706 VNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQ 765
           VN+G     A  ++       TH EI P  +LG+CA I              +P+P HNQ
Sbjct: 308 VNDGEFDPAARLKASTHAHTWTHCEIHPSMILGICASI--------------IPFPDHNQ 353

Query: 766 APRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQ 825
           +PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  
Sbjct: 354 SPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNA 413

Query: 826 I 826
           I
Sbjct: 414 I 414


>gi|46277372|gb|AAS86876.1| DNA-dependent RNA polymerase II [Peziza echinospora]
          Length = 541

 Score =  213 bits (541), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 103/263 (39%), Positives = 162/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N + R+DT+   L Y Q+P+  ++++    F
Sbjct: 210  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYRERMDTMANILYYPQKPLGTTRSMEFLKF 269

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R L YR      K+      +  
Sbjct: 270  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYMDQEKRVGMNVVEEF 329

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMP-TISVSAISMATPEY-- 1090
              P      R     +  LD+DG+VAPG ++    +++ K+ P + ++  +   T  +  
Sbjct: 330  EKPTRGNTLRLKHGTYDKLDEDGLVAPGVRVSGEDIIIGKTAPISPNMEELGQRTKXHTK 389

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    + +    +++V+V++N E    +K+ +R T+ P+IGDKF+SRHGQKG IG+  
Sbjct: 390  RDVSTPLRSTENGIVDQVMVTTNQEGLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITY 449

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
              EDMPF   G+ PDII+NPH +
Sbjct: 450  RNEDMPFTSEGVVPDIIINPHAI 472



 Score =  125 bits (314), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 115/221 (52%), Gaps = 13/221 (5%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESG-ICPDIIMNPHGL 1173
            ++ +  +P  G+    +HG      + G++  G+ V  ED+   ++  I P    N   L
Sbjct: 325  VVEEFEKPTRGNTLRLKHGTYDKLDEDGLVAPGVRVSGEDIIIGKTAPISP----NMEEL 380

Query: 1174 KGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
                +    ++V    + +    +++V+V++N E    +K+ +R T+ P+IGDKF+SRHG
Sbjct: 381  GQRTKXHTKRDVSTPLRSTENGIVDQVMVTTNQEGLKFVKVRMRTTKIPQIGDKFASRHG 440

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGT 1293
            QKG IG+    EDMPF   G+ PDII+NPH  PSRMT+  LIE    K   + G   + T
Sbjct: 441  QKGTIGITYRNEDMPFTSEGVVPDIIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDAT 500

Query: 1294 AFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIY 1334
             F    +  V   L  HGY  +G +I Y+G TG  L   ++
Sbjct: 501  PFTDVTVDSVSRLLREHGYQSRGFEIMYNGHTGRKLVVQVF 541



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 59/100 (59%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 194 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 239

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
            + R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 240 YRERMDTMANILYYPQKPLGTTRSMEFLKFRELPAGQNAI 279


>gi|45545305|gb|AAS67500.1| DNA-dependent RNA polymerase II second largest subunit, partial
            [Baeomyces sp. SLJ472]
          Length = 894

 Score =  213 bits (541), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 106/264 (40%), Positives = 163/264 (61%), Gaps = 5/264 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 552  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDERMDTMANILYYPQKPLATTRSMEFLKF 611

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L +R      K+      ++ 
Sbjct: 612  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRTYTDQEKRIGMSVVEQF 671

Query: 1034 LGPLLEADTRKPVY-RHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAISMATPEY- 1090
              P + +DT K  +  +  LD DGIVAPG ++    +++ K+ P       +   T  + 
Sbjct: 672  EKP-MRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKLHI 730

Query: 1091 -KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             ++V    + +    ++KVL+++N+E    +K+ +R T+ P+IGDKF+SRHGQKG IG+ 
Sbjct: 731  KRDVSTPLRTTENGIVDKVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGIT 790

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
               EDMPF   GI PD+I+NPH +
Sbjct: 791  YRMEDMPFTAEGIVPDLIINPHAI 814



 Score =  147 bits (372), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 82/232 (35%), Positives = 125/232 (53%), Gaps = 13/232 (5%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESG-ICPDIIMNPHGL 1173
            ++ Q  +P   D    +HG        G++  G+ V  ED+   ++  I PD       L
Sbjct: 667  VVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPD----AEEL 722

Query: 1174 KGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
                ++   ++V    + +    ++KVL+++N+E    +K+ +R T+ P+IGDKF+SRHG
Sbjct: 723  GQRTKLHIKRDVSTPLRTTENGIVDKVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHG 782

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGT 1293
            QKG IG+    EDMPF   GI PD+I+NPH  PSRMT+  LIE    K   + G   + T
Sbjct: 783  QKGTIGITYRMEDMPFTAEGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDAT 842

Query: 1294 AFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKH 1345
             F    +  +   L  HGY  +G +I Y+G TG  L A ++ GP YYQ+L+H
Sbjct: 843  PFTEVTVDSISSLLREHGYQSRGFEIMYNGHTGRKLVAQVFLGPTYYQRLRH 894



 Score =  111 bits (278), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 90/151 (59%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  T+TN L  ++ TGNW   ++    + GV+QVL+R ++ S L  + R N+
Sbjct: 228 EFNLSLGVKSTTLTNGLKYSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNT 287

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNL+LM +IT     + ++  M  
Sbjct: 288 PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYITVGTPNEPIIDFMIQ 347

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
             +E +  +  E   SP    VFVNG+  G+
Sbjct: 348 RSMEVLEEY--EPTRSPNATKVFVNGVWVGV 376



 Score = 90.9 bits (224), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 536 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 581

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 582 YDERMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 621



 Score = 52.8 bits (125), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 57/117 (48%), Gaps = 20/117 (17%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRM---VLALSDPDMLDDRDYYGNKRLEL 512
           ARD +    + HI         KA +L  M+ RM   VL   +PD   DRD++G KRL+L
Sbjct: 139 ARDIVVKELLPHISQTEGSETRKAFFLGYMVHRMLQVVLGRREPD---DRDHFGKKRLDL 195

Query: 513 AGSLLSLMFEDVFKRFNSEL-----------KETNLS-GV--VNLVSGWWFELKYGN 555
           AG L++ +F  +F +   ++           +E NLS GV    L +G  + L  GN
Sbjct: 196 AGPLMAGLFRMLFNKLVKDVYNYLKKCVESNREFNLSLGVKSTTLTNGLKYSLATGN 252


>gi|386801236|gb|AFJ39282.1| RNA polymerase II second largest subunit, partial [Pleurotus
            pulmonarius]
          Length = 687

 Score =  213 bits (541), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 160/263 (60%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 345  IIPFPDHNQSPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKF 404

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 405  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSVDRGLFRSMYYRSYMDLEKKSGIQQLEEF 464

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 465  EKPSRDNTLRMKHGTYDKLENDGLIAPGTGVVGEDIIIGKTAPIPPDSEELGQRTRTHTR 524

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++N E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 525  RDVSTPLKSTENGIVDQVLITTNHEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 584

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 585  RQEDMPFTCEGIVPDIIINPHAI 607



 Score =  155 bits (393), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 75/168 (44%), Positives = 103/168 (61%)

Query: 1178 RITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV 1237
            R    ++V    K +    +++VL+++N E    +K+ +R TR P+IGDKF+SRHGQKG 
Sbjct: 520  RTHTRRDVSTPLKSTENGIVDQVLITTNHEGQKFVKIRVRSTRIPQIGDKFASRHGQKGT 579

Query: 1238 IGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGG 1297
            IG+   QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F  
Sbjct: 580  IGITYRQEDMPFTCEGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTD 639

Query: 1298 TKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKH 1345
              +  V   L + GY  +G ++ Y G TG  L+A +Y GP YYQ+LKH
Sbjct: 640  LTVESVSAFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKH 687



 Score =  110 bits (274), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 91/151 (60%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 39  EFNLHLAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT 98

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM+ I+  +    +++ +  
Sbjct: 99  PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSISAPVIEFLEE 158

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E +        SS     VFVNG+  G+
Sbjct: 159 WGLESL---EENAHSSIPCTKVFVNGVWMGV 186



 Score = 85.1 bits (209), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/121 (38%), Positives = 64/121 (52%), Gaps = 14/121 (11%)

Query: 706 VNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQ 765
           VN+G     A  ++       TH EI    +LG+CA I              +P+P HNQ
Sbjct: 308 VNDGEYDPAARLKASTHAHTWTHAEITRSMILGICASI--------------IPFPDHNQ 353

Query: 766 APRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQ 825
           +PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  
Sbjct: 354 SPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNA 413

Query: 826 I 826
           I
Sbjct: 414 I 414


>gi|354992127|gb|AER45770.1| RNA polymerase II second largest subunit [Pleurotus ostreatus]
          Length = 687

 Score =  213 bits (541), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 160/263 (60%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 345  IIPFPDHNQSPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKF 404

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 405  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSVDRGLFRSMYYRSYMDLEKKSGIQQLEEF 464

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 465  EKPSRDNTLRMKHGTYDKLENDGLIAPGTGVVGEDIIIGKTAPIPPDSEELGQRTRTHTR 524

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++N E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 525  RDVSTPLKSTENGIVDQVLITTNHEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 584

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 585  RQEDMPFTCEGIVPDIIINPHAI 607



 Score =  156 bits (394), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 75/168 (44%), Positives = 103/168 (61%)

Query: 1178 RITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV 1237
            R    ++V    K +    +++VL+++N E    +K+ +R TR P+IGDKF+SRHGQKG 
Sbjct: 520  RTHTRRDVSTPLKSTENGIVDQVLITTNHEGQKFVKIRVRSTRIPQIGDKFASRHGQKGT 579

Query: 1238 IGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGG 1297
            IG+   QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F  
Sbjct: 580  IGITYRQEDMPFTCEGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTD 639

Query: 1298 TKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKH 1345
              +  V   L + GY  +G ++ Y G TG  L+A +Y GP YYQ+LKH
Sbjct: 640  LTVESVSAFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKH 687



 Score =  112 bits (280), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 115/227 (50%), Gaps = 11/227 (4%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 39  EFNLTLAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT 98

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM+ I+  +    +++ +  
Sbjct: 99  PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSISAPVIEFLEE 158

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHECRL 363
            G+E +        SS     VFVNG+  G+  H       +  +        +P    +
Sbjct: 159 WGLESL---EENAHSSIPCTKVFVNGVWMGV--HRDPANLVKTLKKLRRKDDISPEVSVV 213

Query: 364 RDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
           RD+    P      YT    RV R   ++    ++LQ       N+T
Sbjct: 214 RDIREKEPRV----YTDAG-RVCRPLFIVENHQLLLQKKHIRWLNQT 255



 Score = 88.2 bits (217), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 47/121 (38%), Positives = 65/121 (53%), Gaps = 14/121 (11%)

Query: 706 VNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQ 765
           VN+G     A  ++       TH EI P  +LG+CA I              +P+P HNQ
Sbjct: 308 VNDGEYDPAARLKASTHAHTWTHCEIHPSMILGICASI--------------IPFPDHNQ 353

Query: 766 APRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQ 825
           +PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  
Sbjct: 354 SPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNA 413

Query: 826 I 826
           I
Sbjct: 414 I 414


>gi|449550934|gb|EMD41898.1| hypothetical protein CERSUDRAFT_110450 [Ceriporiopsis subvermispora
            B]
          Length = 1242

 Score =  212 bits (540), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 105/263 (39%), Positives = 162/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 772  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLRF 831

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 832  RELPAGQNAVVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEF 891

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS-AISMATPEY-- 1090
              P  E   R     +  L+ DG++APG  +    +++ K+ P    S  +   T  +  
Sbjct: 892  EKPSRENTLRMKHGTYDKLEDDGLIAPGTGVNGEDIIIGKTAPIPPDSEELGQRTRAHTR 951

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++N+E    +K+ +R TR P+ GDKF+SRHGQKG IG+  
Sbjct: 952  RDVSTPLKSTESGIIDQVLITTNAEGQKFVKIRVRSTRIPQTGDKFASRHGQKGTIGITY 1011

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDI++NPH +
Sbjct: 1012 RQEDMPFTAEGITPDIVINPHAI 1034



 Score =  190 bits (483), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 88/188 (46%), Positives = 122/188 (64%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+++N+E    +K+ +R TR P+ GDKF+SRHGQKG IG+  
Sbjct: 952  RDVSTPLKSTESGIIDQVLITTNAEGQKFVKIRVRSTRIPQTGDKFASRHGQKGTIGITY 1011

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PDI++NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 1012 RQEDMPFTAEGITPDIVINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVES 1071

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
            V + L + GY  +G ++ Y G TG  L+A +Y GP YYQ+LKHMV DKIH+R+RGP  +L
Sbjct: 1072 VSQVLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMVDDKIHSRARGPVQIL 1131

Query: 1363 TRQPTGRR 1370
            TRQP   R
Sbjct: 1132 TRQPVEGR 1139



 Score =  111 bits (277), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 92/151 (60%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKM-ERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++ +TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 452 EFNLSLAVKHNTITNGLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNT 511

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM+ I+  +    +++ +  
Sbjct: 512 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSLSAPVIEFLEE 571

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E +        S+     VFVNG+  G+
Sbjct: 572 WGLESL---EENAHSATPCTKVFVNGVWMGV 599



 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 100/221 (45%), Gaps = 51/221 (23%)

Query: 691 RFDDFLYEGKIEYLDVNEGNDSHIAVS----------ESGIRPGVT-------------- 726
           R+D+ + +G IE LD  E     I +S           +G+ P                 
Sbjct: 691 RWDNLIKDGVIELLDAEEEETVMICMSPEDLENTRLIAAGVDPRADSTEVDPSARLKPTP 750

Query: 727 -----THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMG 781
                TH EI P  +LGVCA I              +P+P HNQ+PRNTYQ AMGKQAMG
Sbjct: 751 SIHTYTHCEIHPSMILGVCASI--------------IPFPDHNQSPRNTYQSAMGKQAMG 796

Query: 782 CIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQISPGGAEELTARESCH 841
               N   R+DT+   L Y Q+P+  ++++    F +LPAG+  +    A    +  +  
Sbjct: 797 IYLTNFLVRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNAVV---AILCYSGYNQE 853

Query: 842 EVLKIISFSISVAVFDSVWLG-----DVKQGVHQLSEEKEP 877
           + + +   SI   +F S++       + K GV QL E ++P
Sbjct: 854 DSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKP 894



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 58/114 (50%), Gaps = 14/114 (12%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A++ L    + H+ +       KA +   MI R++LA  +   LDDRD++G KRL+LAG 
Sbjct: 363 AQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAALERRDLDDRDHFGKKRLDLAGP 422

Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYGN 555
           LL+ +F  +F++   ++           KE NLS  V    + +G  + L  GN
Sbjct: 423 LLANLFRMLFRKLTKDVYRYLQKCVESHKEFNLSLAVKHNTITNGLKYSLATGN 476



 Score = 42.7 bits (99), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 30/44 (68%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSD 157
           D W ++ SF ++KGLV+  +DSFD F+   +++L+  N+++  D
Sbjct: 37  DCWTVISSFFEQKGLVRQQLDSFDEFVQNTMQELVDENSDLILD 80


>gi|408400353|gb|EKJ79435.1| hypothetical protein FPSE_00366 [Fusarium pseudograminearum CS3096]
          Length = 1269

 Score =  212 bits (540), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 101/263 (38%), Positives = 162/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 798  IIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSMEFLKF 857

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L +R+     K+      +  
Sbjct: 858  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYSDQEKKVGLNYTEIF 917

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  LD+DGIVAPG ++    +++ K+ P    +        T + 
Sbjct: 918  EKPFQQTTLRMKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAPIDQENQDLGTRTQTHQR 977

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            +++    + +    +++V+++ N+++   +K+ +R T+ P+IGDKF+SRHGQKG IG+  
Sbjct: 978  RDISTPLRSTENGIVDQVILTVNADNVKYVKVRVRTTKIPQIGDKFASRHGQKGTIGVTY 1037

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF+  G+ PDII+NPH +
Sbjct: 1038 RQEDMPFSREGLTPDIIINPHAI 1060



 Score =  184 bits (468), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 83/190 (43%), Positives = 125/190 (65%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            +++    + +    +++V+++ N+++   +K+ +R T+ P+IGDKF+SRHGQKG IG+  
Sbjct: 978  RDISTPLRSTENGIVDQVILTVNADNVKYVKVRVRTTKIPQIGDKFASRHGQKGTIGVTY 1037

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF+  G+ PDII+NPH  PSRMT+  LIE L  K   +EG   + T F    +  
Sbjct: 1038 RQEDMPFSREGLTPDIIINPHAIPSRMTIAHLIECLLSKVSTLEGMEGDATPFTDVTVDS 1097

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
            V + L +HGY  +G ++ Y+G TG  L A ++ GP YYQ+L+HMV DKIHAR+RGP  ++
Sbjct: 1098 VSDILRKHGYQSRGFEVMYNGHTGRKLRAQVFFGPTYYQRLRHMVDDKIHARARGPVQIM 1157

Query: 1363 TRQPTGRRWK 1372
            TRQP   R +
Sbjct: 1158 TRQPVEGRAR 1167



 Score =  103 bits (257), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 89/150 (59%), Gaps = 3/150 (2%)

Query: 186 FDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQ 244
           F++   ++  T++N L  ++ TGNW   ++      GV+QVL+R ++ S L  + R N+ 
Sbjct: 464 FNLNVAIKPGTLSNGLKYSLATGNWGDQKKAASSTAGVSQVLNRYTFASTLSHLRRTNTP 523

Query: 245 FEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNI 304
             +  K++ PR L  + WG++CP++TPEG+ACGLVKNL+LM +++  +  + ++  M + 
Sbjct: 524 IGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSPGEPLIDFMVSR 583

Query: 305 GIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
           G+E +  +  E    P    VFVNG   G+
Sbjct: 584 GMEVVEEY--EPTRYPHATKVFVNGSWVGV 611



 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 782 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGFFLTN 827

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 828 YSRRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 867



 Score = 54.7 bits (130), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 41/77 (53%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A+D L    + HI         KA +L  M+ +++         DDRD++G KRL+LAG 
Sbjct: 374 AKDILQKETLPHISQSEGSETRKAFFLGYMVHKLLQCALGRREPDDRDHFGKKRLDLAGP 433

Query: 516 LLSLMFEDVFKRFNSEL 532
           LL+ +F  + +R N EL
Sbjct: 434 LLAKLFRGIIRRMNQEL 450


>gi|354992141|gb|AER45777.1| RNA polymerase II second largest subunit [Pleurotus ostreatus]
          Length = 687

 Score =  212 bits (540), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 160/263 (60%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 345  IIPFPDHNQSPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKF 404

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 405  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSVDRGLFRSMYYRSYMDLEKKSGIQQLEEF 464

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 465  EKPSRDNTLRMKHGTYDKLENDGLIAPGTGVVGEDIIIGKTAPIPPDSEGLGQRTRTHTR 524

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++N E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 525  RDVSTPLKSTENGIVDQVLITTNHEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 584

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 585  RQEDMPFTCEGIVPDIIINPHAI 607



 Score =  156 bits (394), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 87/230 (37%), Positives = 124/230 (53%), Gaps = 11/230 (4%)

Query: 1124 LRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESGICPDIIMNPHGLKG 1175
            L +  +P   +    +HG        G+I  G  V  ED+   ++   P    +  GL  
Sbjct: 461  LEEFEKPSRDNTLRMKHGTYDKLENDGLIAPGTGVVGEDIIIGKTAPIPP---DSEGLGQ 517

Query: 1176 CDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1235
              R    ++V    K +    +++VL+++N E    +K+ +R TR P+IGDKF+SRHGQK
Sbjct: 518  RTRTHTRRDVSTPLKSTENGIVDQVLITTNHEGQKFVKIRVRSTRIPQIGDKFASRHGQK 577

Query: 1236 GVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAF 1295
            G IG+   QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F
Sbjct: 578  GTIGITYRQEDMPFTCEGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPF 637

Query: 1296 GGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKH 1345
                +  V   L + GY  +G ++ Y   TG  L+A +Y GP YYQ+LKH
Sbjct: 638  TDLTVESVSAFLRQKGYQSRGLEVMYHSHTGRKLQAQVYLGPTYYQRLKH 687



 Score =  111 bits (278), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 91/151 (60%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 39  EFNLTLAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT 98

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM+ I+  +    +++ +  
Sbjct: 99  PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSISAPVIEFLEE 158

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E +        SS     VFVNG+  G+
Sbjct: 159 WGLESL---EENAHSSVPCTKVFVNGVWMGV 186



 Score = 88.2 bits (217), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 47/121 (38%), Positives = 65/121 (53%), Gaps = 14/121 (11%)

Query: 706 VNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQ 765
           VN+G     A  ++       TH EI P  +LG+CA I              +P+P HNQ
Sbjct: 308 VNDGEYDPAARLKASTHAHTWTHCEIHPSMILGICASI--------------IPFPDHNQ 353

Query: 766 APRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQ 825
           +PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  
Sbjct: 354 SPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNA 413

Query: 826 I 826
           I
Sbjct: 414 I 414


>gi|312985630|gb|ADR31276.1| RNA polymerase II [Fusarium sporotrichioides]
          Length = 612

 Score =  212 bits (540), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 101/263 (38%), Positives = 162/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 279  IIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSMEFLKF 338

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L +R+     K+      +  
Sbjct: 339  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYSDQEKKVGLNYTEVF 398

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  LD+DGIVAPG ++    +++ K+ P    +        T + 
Sbjct: 399  EKPFQQTTLRMKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAPIDQENQDLGTRTQTHQR 458

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            +++    + +    +++V+++ N+++   +K+ +R T+ P+IGDKF+SRHGQKG IG+  
Sbjct: 459  RDISTPLRSTENGIVDQVILTVNADNVKYVKVRVRTTKIPQIGDKFASRHGQKGTIGVTY 518

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF+  G+ PDII+NPH +
Sbjct: 519  RQEDMPFSREGLTPDIIINPHAI 541



 Score =  135 bits (341), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 62/140 (44%), Positives = 92/140 (65%)

Query: 1197 LEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICP 1256
            +++V+++ N+++   +K+ +R T+ P+IGDKF+SRHGQKG IG+   QEDMPF+  G+ P
Sbjct: 473  VDQVILTVNADNVKYVKVRVRTTKIPQIGDKFASRHGQKGTIGVTYRQEDMPFSREGLTP 532

Query: 1257 DIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQG 1316
            DII+NPH  PSRMT+  LIE L  K   +EG   + T F    +  V E L +HGY  +G
Sbjct: 533  DIIINPHAIPSRMTIAHLIECLLSKVSTLEGMEGDATPFTDVTVDSVSELLRKHGYQSRG 592

Query: 1317 KDIFYSGITGEALEAYIYSG 1336
             ++ Y+G TG  L A ++ G
Sbjct: 593  FEVMYNGHTGRKLRAQVFFG 612



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 263 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGFFLTN 308

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 309 YSRRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 348



 Score = 77.8 bits (190), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 58/93 (62%), Gaps = 2/93 (2%)

Query: 242 NSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIM 301
           N+   +  K++ PR L  + WG++CP++TPEG+ACGLVKNL+LM +++  +  + +++ M
Sbjct: 2   NTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSPAEPLIEFM 61

Query: 302 YNIGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            N G+E +  +  E    P    VFVNG   G+
Sbjct: 62  INRGMEVVEEY--EPTRYPHATKVFVNGSWVGV 92


>gi|354992137|gb|AER45775.1| RNA polymerase II second largest subunit [Pleurotus ostreatus]
          Length = 687

 Score =  212 bits (540), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 160/263 (60%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 345  IIPFPDHNQSPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKF 404

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 405  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSVDRGLFRSMYYRSYMDLEKKSGIQQLEEF 464

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  L+ DG++APG  +    +++ K+ P    S        T   
Sbjct: 465  EKPSRDNTLRMKHGTYDKLENDGLIAPGTGVVGEDIIIGKTAPIPPDSEELGQRTRTHTR 524

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++N E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 525  RDVSTPLKSTENGIVDQVLITTNHEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 584

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 585  RQEDMPFTCEGIVPDIIINPHAI 607



 Score =  156 bits (394), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 75/168 (44%), Positives = 103/168 (61%)

Query: 1178 RITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV 1237
            R    ++V    K +    +++VL+++N E    +K+ +R TR P+IGDKF+SRHGQKG 
Sbjct: 520  RTHTRRDVSTPLKSTENGIVDQVLITTNHEGQKFVKIRVRSTRIPQIGDKFASRHGQKGT 579

Query: 1238 IGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGG 1297
            IG+   QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F  
Sbjct: 580  IGITYRQEDMPFTCEGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTD 639

Query: 1298 TKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKH 1345
              +  V   L + GY  +G ++ Y G TG  L+A +Y GP YYQ+LKH
Sbjct: 640  LTVESVSAFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKH 687



 Score =  109 bits (273), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 90/151 (59%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 39  EFNLTLAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT 98

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGL KNLALM+ I+  +    +++ +  
Sbjct: 99  PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLAKNLALMSCISVGSISAPVIEFLEE 158

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E +        SS     VFVNG+  G+
Sbjct: 159 WGLESL---EENAHSSIPCTKVFVNGVWMGV 186



 Score = 88.2 bits (217), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 47/121 (38%), Positives = 65/121 (53%), Gaps = 14/121 (11%)

Query: 706 VNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQ 765
           VN+G     A  ++       TH EI P  +LG+CA I              +P+P HNQ
Sbjct: 308 VNDGEYDPAARLKASTHAHTWTHCEIHPSMILGICASI--------------IPFPDHNQ 353

Query: 766 APRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQ 825
           +PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  
Sbjct: 354 SPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNA 413

Query: 826 I 826
           I
Sbjct: 414 I 414


>gi|312985626|gb|ADR31274.1| RNA polymerase II [Fusarium armeniacum]
 gi|312985636|gb|ADR31279.1| RNA polymerase II [Fusarium armeniacum]
 gi|312985690|gb|ADR31306.1| RNA polymerase II [Fusarium armeniacum]
          Length = 612

 Score =  212 bits (540), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 101/263 (38%), Positives = 162/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 279  IIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSMEFLKF 338

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L +R+     K+      +  
Sbjct: 339  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYSDQEKKVGLNYTEVF 398

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  LD+DGIVAPG ++    +++ K+ P    +        T + 
Sbjct: 399  EKPFQQTTLRMKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAPIDQENQDLGTRTQTHQR 458

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            +++    + +    +++V+++ N+++   +K+ +R T+ P+IGDKF+SRHGQKG IG+  
Sbjct: 459  RDISTPLRSTENGIVDQVILTVNADNVKYVKVRVRTTKIPQIGDKFASRHGQKGTIGVTY 518

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF+  G+ PDII+NPH +
Sbjct: 519  RQEDMPFSREGLTPDIIINPHAI 541



 Score =  135 bits (341), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 62/140 (44%), Positives = 92/140 (65%)

Query: 1197 LEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICP 1256
            +++V+++ N+++   +K+ +R T+ P+IGDKF+SRHGQKG IG+   QEDMPF+  G+ P
Sbjct: 473  VDQVILTVNADNVKYVKVRVRTTKIPQIGDKFASRHGQKGTIGVTYRQEDMPFSREGLTP 532

Query: 1257 DIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQG 1316
            DII+NPH  PSRMT+  LIE L  K   +EG   + T F    +  V E L +HGY  +G
Sbjct: 533  DIIINPHAIPSRMTIAHLIECLLSKVSTLEGMEGDATPFTDVTVDSVSELLRKHGYQSRG 592

Query: 1317 KDIFYSGITGEALEAYIYSG 1336
             ++ Y+G TG  L A ++ G
Sbjct: 593  FEVMYNGHTGRKLRAQVFFG 612



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 263 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGFFLTN 308

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 309 YSRRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 348



 Score = 77.8 bits (190), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 58/93 (62%), Gaps = 2/93 (2%)

Query: 242 NSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIM 301
           N+   +  K++ PR L  + WG++CP++TPEG+ACGLVKNL+LM +++  +  + +++ M
Sbjct: 2   NTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSPAEPLIEFM 61

Query: 302 YNIGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            N G+E +  +  E    P    VFVNG   G+
Sbjct: 62  INRGMEVVEEY--EPTRYPHATKVFVNGSWVGV 92


>gi|352682853|ref|YP_004893377.1| DNA-directed RNA polymerase subunit B [Thermoproteus tenax Kra 1]
 gi|350275652|emb|CCC82299.1| DNA-directed RNA polymerase subunit B [Thermoproteus tenax Kra 1]
          Length = 1127

 Score =  212 bits (540), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 104/265 (39%), Positives = 165/265 (62%), Gaps = 8/265 (3%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++PY  HNQ+PRN Y+ AM KQ++G    N   ++D+  + L Y +RP+V ++ + +  +
Sbjct: 661  IIPYLEHNQSPRNQYEAAMAKQSLGLPQANIMYKLDSRGHMLYYPERPIVTTRGLELIGY 720

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             + PAGQNA +A+++Y+GY+IEDA+IMNK+S++RGF R   YR  +   ++YP    DRI
Sbjct: 721  SRKPAGQNAVVALLTYTGYNIEDAIIMNKSSVERGFMRSNFYRTYETEEQKYPGGEEDRI 780

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMP-----TISVSAISMATP 1088
              P   A   +    +  LD+DGI  P   +   +V++ K+ P     T+    I     
Sbjct: 781  EVPDPSARGYRGPEAYGHLDEDGIAPPEVYVSGGEVIIGKTAPPRFYMTLETEKI---LK 837

Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
            E ++  +  +      +++V+++ + E   L+K+ LR+ R PE+GDKF+SRHGQKGVIG+
Sbjct: 838  ERRDASIPVRRGEKGIVDRVVITESPEGNKLVKVRLRELRVPELGDKFASRHGQKGVIGM 897

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
            ++ QEDMPF E GI PDII+NPH +
Sbjct: 898  LLRQEDMPFTEDGIVPDIIVNPHAM 922



 Score =  212 bits (539), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 102/192 (53%), Positives = 137/192 (71%)

Query: 1179 ITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVI 1238
            + E ++  +  +      +++V+++ + E   L+K+ LR+ R PE+GDKF+SRHGQKGVI
Sbjct: 836  LKERRDASIPVRRGEKGIVDRVVITESPEGNKLVKVRLRELRVPELGDKFASRHGQKGVI 895

Query: 1239 GLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGT 1298
            G+++ QEDMPF E GI PDII+NPH  PSRMTVG+L+E +AGKAG M G   + T F G 
Sbjct: 896  GMLLRQEDMPFTEDGIVPDIIVNPHAMPSRMTVGQLLESIAGKAGAMVGRLIDATPFEGV 955

Query: 1299 KLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGP 1358
               +++E L++ GY + GK++ YSGITGE L A I+ G VYYQKL HMV DKIHARSRGP
Sbjct: 956  PESELRELLMKLGYRWDGKEVMYSGITGEKLVADIFIGIVYYQKLHHMVADKIHARSRGP 1015

Query: 1359 RVVLTRQPTGRR 1370
              +LTRQPT  R
Sbjct: 1016 VQILTRQPTEGR 1027



 Score = 97.8 bits (242), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 54/152 (35%), Positives = 83/152 (54%), Gaps = 8/152 (5%)

Query: 192 MRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKV 251
           +R D IT  +  A+ TGNW        + GV+Q+L R +Y+S L  + R+ S   +T+  
Sbjct: 406 VRPDIITERVKQALATGNWV-----GGKTGVSQILDRTNYLSTLSYLRRVVSSLSRTQPH 460

Query: 252 SGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAM 311
              R L  +QWG LC  +TPEG+  GLVKNLAL+  +T   DE ++  ++YN+G+  +  
Sbjct: 461 FEARDLHPTQWGRLCAVETPEGQNVGLVKNLALLAEVTMGVDESSVEGLLYNLGVVPVLE 520

Query: 312 FNGEELSSPGVYLVFVNGILAGITCHHKEVCK 343
                ++   VYL   NG L G+    +E+ K
Sbjct: 521 ARRNGVAGAEVYL---NGRLIGVHPEPEELVK 549



 Score = 88.6 bits (218), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 74/135 (54%), Gaps = 15/135 (11%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKR 751
           ++D +  G IEYLD +E  ++HIAV       G T H+EI P ++LG  A I        
Sbjct: 611 WNDLIKMGVIEYLDADEEENAHIAVDPQEDLAGYT-HMEIIPSSILGAIASI-------- 661

Query: 752 FHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTI 811
                 +PY  HNQ+PRN Y+ AM KQ++G    N   ++D+  + L Y +RP+V ++ +
Sbjct: 662 ------IPYLEHNQSPRNQYEAAMAKQSLGLPQANIMYKLDSRGHMLYYPERPIVTTRGL 715

Query: 812 RITNFHKLPAGKCQI 826
            +  + + PAG+  +
Sbjct: 716 ELIGYSRKPAGQNAV 730


>gi|40644545|emb|CAD88975.1| DNA-directed RNA polymerase subunit B [Myrtus communis]
          Length = 572

 Score =  212 bits (540), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 108/271 (39%), Positives = 165/271 (60%), Gaps = 20/271 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+ RNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 205  IIPFPDHNQSXRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 264

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L +R+ +           ++ 
Sbjct: 265  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR---------DEEKK 315

Query: 1034 LGPLLEADTRKPV------YRHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            +G L++ D  +P        RH +   LD DG+  PG ++    V++ K+ P        
Sbjct: 316  MGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAXXXXXX 375

Query: 1085 MATPEY--KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQ 1142
                 Y  ++  +S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQ
Sbjct: 376  GXASRYSRRDHSISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 435

Query: 1143 KGVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            KG +G+   QEDMP+   GI PDII+NPH +
Sbjct: 436  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAI 466



 Score =  175 bits (444), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 83/179 (46%), Positives = 117/179 (65%)

Query: 1187 VSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQED 1246
            +S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   QED
Sbjct: 388  ISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 447

Query: 1247 MPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEE 1306
            MP+   GI PDII+NPH  PSRMT+G+LI  + GK     G   + T F    + ++ + 
Sbjct: 448  MPWTVEGITPDIIVNPHAIPSRMTIGQLIXCIMGKVAAHMGKEGDATPFTDVTVDNISKA 507

Query: 1307 LIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQ 1365
            L + GY  +G +  Y+G TG  L A I+ GP YYQ+LKHMV DKIH+R RGP  +LTRQ
Sbjct: 508  LHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQ 566



 Score = 94.0 bits (232), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 53/141 (37%), Positives = 76/141 (53%), Gaps = 24/141 (17%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPG----------VTTHLEIAPFTLLGVCA 741
           + + + +G IEY+D  E   + I+++ + +               TH EI P  +LGVCA
Sbjct: 144 WHNLVAKGFIEYIDTEEEETTMISMTINDLVQARLXXEXAYSETYTHCEIHPSLILGVCA 203

Query: 742 GIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYA 801
            I              +P+P HNQ+ RNTYQ AMGKQAMG    N Q R+DTL Y L Y 
Sbjct: 204 SI--------------IPFPDHNQSXRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYP 249

Query: 802 QRPMVESKTIRITNFHKLPAG 822
           Q+P+V ++ +   +F +LPAG
Sbjct: 250 QKPLVTTRAMEHLHFRQLPAG 270



 Score = 55.1 bits (131), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 42/71 (59%), Gaps = 8/71 (11%)

Query: 267 PSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMFNGEELSS---PGVY 323
           P++TPEG+ACGLVKNLALM ++T  +    +L+ +   G E     N EE+S    P   
Sbjct: 1   PAETPEGQACGLVKNLALMVYVTVGSAAYPILEFLEEWGTE-----NFEEISPVVIPQAT 55

Query: 324 LVFVNGILAGI 334
            +FVNG   GI
Sbjct: 56  KIFVNGCWVGI 66


>gi|52699818|gb|AAU86971.1| DNA-dependent RNA polymerase II second largest subunit [Gyalecta
            ulmi]
          Length = 711

 Score =  212 bits (540), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 106/266 (39%), Positives = 163/266 (61%), Gaps = 9/266 (3%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 361  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDERMDTMANILYYPQKPLATTRSMEFLKF 420

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IM+++S+DRG  R L YR+     K+      ++ 
Sbjct: 421  RELPAGQNAIVAIACYSGYNQEDSVIMSQSSIDRGLFRSLFYRSYVEQEKRVGMSLVEQF 480

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKEV 1093
              PL     R     +  LD DGI+APG ++    +++ K+ P I+  A  +   +  ++
Sbjct: 481  EKPLRSETLRVKHGTYEKLDDDGIIAPGVRVSGEDIIIGKTAP-IAPDAEELG--QRTKL 537

Query: 1094 PVSYKGSVP------SYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
                  S P        +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHGQKG IG
Sbjct: 538  HTKRDASTPLRTTESGIVDRVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKGTIG 597

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            +   QEDMPF+  GI PD+I+NPH +
Sbjct: 598  ITYRQEDMPFSREGITPDLIINPHAI 623



 Score =  159 bits (402), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 88/240 (36%), Positives = 132/240 (55%), Gaps = 13/240 (5%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESG-ICPDIIMNPHGL 1173
            L+ Q  +P   +    +HG        G+I  G+ V  ED+   ++  I PD       L
Sbjct: 476  LVEQFEKPLRSETLRVKHGTYEKLDDDGIIAPGVRVSGEDIIIGKTAPIAPDA----EEL 531

Query: 1174 KGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
                ++   ++     + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHG
Sbjct: 532  GQRTKLHTKRDASTPLRTTESGIVDRVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHG 591

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGT 1293
            QKG IG+   QEDMPF+  GI PD+I+NPH  PSRMT+  LIE    K   + G   + T
Sbjct: 592  QKGTIGITYRQEDMPFSREGITPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDAT 651

Query: 1294 AFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHA 1353
             F    +  V   L  HGY  +G ++ Y+G TG  L A ++ GP YYQ+L+HMV DKI A
Sbjct: 652  PFTEVTVDSVSRLLREHGYQSRGFEMMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIXA 711



 Score =  112 bits (279), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 92/151 (60%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  T+TN L  ++ TGNW   ++    + GV+QVL+R ++ S L  + R N+
Sbjct: 38  EFNLTLGVKSTTLTNGLKYSLATGNWGDQKKAASAKAGVSQVLNRYTFASTLSHLRRTNT 97

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT  +  + +++ M  
Sbjct: 98  PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGSPSEPIIEFMVQ 157

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
             +E +  +  E   +P    VFVNG+  G+
Sbjct: 158 RNMEVLEEY--EPTRNPHSTKVFVNGVWVGV 186



 Score = 90.1 bits (222), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 345 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 390

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 391 FDERMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 430


>gi|45120580|gb|AAO64681.2| RNA polymerase II subunit RPB2, partial [Stereum hirsutum]
          Length = 801

 Score =  212 bits (540), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 105/263 (39%), Positives = 162/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 517  IIPFPDHNQSPRNTYQSAMGKQAMGIYXTNFLVRMDTMANILYYPQKPLATTRSMEYLKF 576

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+   Q  +  
Sbjct: 577  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEF 636

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS-AISMATPEY-- 1090
              P  +   R     +  L+ DG++APG  +    +++ K+ P    S  +   T  +  
Sbjct: 637  EKPTRDTTLRMKHGTYDKLEDDGLIAPGTGVNGEDIIIGKTAPIPPDSEELGQRTRIHTR 696

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++N E    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 697  RDVSTPLKSTESGIVDQVLITTNHEGQKFVKVRVRATRIPQIGDKFASRHGQKGTIGITY 756

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDI++NPH +
Sbjct: 757  RQEDMPFTAEGITPDIVINPHAI 779



 Score =  114 bits (286), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 52/110 (47%), Positives = 72/110 (65%)

Query: 1178 RITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV 1237
            RI   ++V    K +    +++VL+++N E    +K+ +R TR P+IGDKF+SRHGQKG 
Sbjct: 692  RIHTRRDVSTPLKSTESGIVDQVLITTNHEGQKFVKVRVRATRIPQIGDKFASRHGQKGT 751

Query: 1238 IGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEG 1287
            IG+   QEDMPF   GI PDI++NPH  PSRMT+G L+E L  K   + G
Sbjct: 752  IGITYRQEDMPFTAEGITPDIVINPHAIPSRMTIGHLVECLLSKVATLIG 801



 Score =  107 bits (267), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 55/150 (36%), Positives = 91/150 (60%), Gaps = 4/150 (2%)

Query: 186 FDIVNHMRQDTITNALTAAIQTGNWTIRRFKM-ERQGVTQVLSRLSYISGLGMMTRINSQ 244
           F++   ++ +TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+ 
Sbjct: 210 FNLNLAVKHNTITNGLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTP 269

Query: 245 FEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNI 304
             +  K++ PR L  + WGM+CP++TPEG+ACGLVKNL+LM  I+  +    ++  +   
Sbjct: 270 LGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMATISVGSLSLPVIDFLEEW 329

Query: 305 GIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
           G+E  ++      ++P    VFVNG+  G+
Sbjct: 330 GLE--SLEENAHSATPTTK-VFVNGVWMGV 356



 Score = 89.7 bits (221), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 45/110 (40%), Positives = 62/110 (56%), Gaps = 14/110 (12%)

Query: 717 SESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMG 776
           + SG+     TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMG
Sbjct: 491 ASSGLNTHTWTHCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMG 536

Query: 777 KQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
           KQAMG    N   R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 537 KQAMGIYXTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAI 586



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 14/114 (12%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A++ L    + HI +       KA +   MI R++LA  +   LDDRD++G KRL+LAG 
Sbjct: 120 AQEILQKEMLPHISMSEGSESKKAYFFGYMIHRLLLAGMERRELDDRDHFGKKRLDLAGP 179

Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYGN 555
           LL+ +F  +F++   ++           K+ NL+  V    + +G  + L  GN
Sbjct: 180 LLANLFRMLFRKLTRDVYRYLQKCVETHKDFNLNLAVKHNTITNGLKYSLATGN 233


>gi|56694318|gb|AAW22899.1| RNA polymerase II second largest subunit [Macrozamia moorei]
          Length = 523

 Score =  212 bits (540), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 109/261 (41%), Positives = 160/261 (61%), Gaps = 1/261 (0%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 176  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHF 235

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L YR+ +   K+      +  
Sbjct: 236  RQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFYRSYRDEEKRMGTLVKEEF 295

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMP-TISVSAISMATPEYKE 1092
              P  E  T      +  LD DG+  PG ++    V++ K+ P T   S    A    ++
Sbjct: 296  GRPNRENTTGMRHGSYDKLDDDGLAPPGTRVSGEXVIIGKTTPVTQDESGGQAARYTKRD 355

Query: 1093 VPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQ 1152
               S + S    +++VL+++N++    +K+ +   R P+IGDKFSSRHGQKG +G+   Q
Sbjct: 356  QSTSLRHSESGMVDQVLLTTNADGLRFVKVRMXSVRIPQIGDKFSSRHGQKGTVGMTYCQ 415

Query: 1153 EDMPFNESGICPDIIMNPHGL 1173
            EDMP+   GI PDII+NPH +
Sbjct: 416  EDMPWTVEGITPDIIVNPHAI 436



 Score =  158 bits (399), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 75/170 (44%), Positives = 107/170 (62%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++   S + S    +++VL+++N++    +K+ +   R P+IGDKFSSRHGQKG +G+  
Sbjct: 354  RDQSTSLRHSESGMVDQVLLTTNADGLRFVKVRMXSVRIPQIGDKFSSRHGQKGTVGMTY 413

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMP+   GI PDII+NPH  PSRMT+G+LIE + GK     G   + T F    + +
Sbjct: 414  CQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDN 473

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIH 1352
            + + L + GY   G +  Y+G TG  L A I+ GP YYQ+LKHMV DKIH
Sbjct: 474  ISKALHKCGYQMXGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIH 523



 Score = 97.4 bits (241), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 56/142 (39%), Positives = 78/142 (54%), Gaps = 25/142 (17%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGI-----RPGVT------THLEIAPFTLLGVC 740
           + + + +G IEY+D  E   + I+++ S +      P         TH EI P  +LGVC
Sbjct: 114 WHELVTKGFIEYVDTEEEETTMISMTISDLVNARNSPPTAASIVKYTHCEIHPSLILGVC 173

Query: 741 AGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVY 800
           A I              +P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y
Sbjct: 174 ASI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYY 219

Query: 801 AQRPMVESKTIRITNFHKLPAG 822
            Q+P+V ++ +   +F +LPAG
Sbjct: 220 PQKPLVTTRAMEHLHFRQLPAG 241


>gi|268574492|ref|XP_002642223.1| C. briggsae CBR-RPB-2 protein [Caenorhabditis briggsae]
          Length = 1194

 Score =  212 bits (540), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 107/266 (40%), Positives = 168/266 (63%), Gaps = 9/266 (3%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DTL + L Y Q+P+V ++++    F
Sbjct: 716  IIPFPDHNQSPRNTYQSAMGKQAMGVYTTNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRF 775

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
            ++LPAG NA +A++SYSGY+ ED++IMN +++DRG  R + YR+ +       N   + I
Sbjct: 776  NELPAGINAIVAILSYSGYNQEDSVIMNNSAIDRGLFRSVFYRSYRDNEANIDNANEELI 835

Query: 1034 LGPLLE--ADTRKPVYRHRALDQDGIVAPGEQICERQVLVNK--SMPTI--SVSAISMAT 1087
              P  E  +  R  +Y    LD+DGI++PG ++    V++ K  ++P I   + A     
Sbjct: 836  EKPTREKCSGMRHSLYDK--LDEDGIISPGMRVSGDDVIIGKTVALPDIDDDLDATGKKY 893

Query: 1088 PEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
            P+ ++     + S    +++V++S N++    +K+ +R  R P+IGDKF+SRHGQKG +G
Sbjct: 894  PK-RDASTFLRSSETGIVDQVMLSLNNDGNKFVKIRMRSVRLPQIGDKFASRHGQKGTMG 952

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            ++  QEDMPF   G+ PDII+NPH +
Sbjct: 953  IMYRQEDMPFTAEGLTPDIIINPHAV 978



 Score =  181 bits (458), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 95/236 (40%), Positives = 142/236 (60%), Gaps = 10/236 (4%)

Query: 1142 QKGVI--GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEK 1199
            + G+I  G+ V  +D+   ++   PDI      L    +    ++     + S    +++
Sbjct: 856  EDGIISPGMRVSGDDVIIGKTVALPDI---DDDLDATGKKYPKRDASTFLRSSETGIVDQ 912

Query: 1200 VLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDII 1259
            V++S N++    +K+ +R  R P+IGDKF+SRHGQKG +G++  QEDMPF   G+ PDII
Sbjct: 913  VMLSLNNDGNKFVKIRMRSVRLPQIGDKFASRHGQKGTMGIMYRQEDMPFTAEGLTPDII 972

Query: 1260 MNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQE---ELIRHGYNYQG 1316
            +NPH  PSRMT+G LIE L GK    +G   + T F  T  V+VQ+    L  +GY+ +G
Sbjct: 973  INPHAVPSRMTIGHLIECLQGKLSANKGEIGDATPFNDT--VNVQKISGLLCEYGYHLRG 1030

Query: 1317 KDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
             ++ Y+G TG+ L   I+ GP YYQ+LKHMV DKIH+R+RGP  ++ RQP   R +
Sbjct: 1031 NEVMYNGHTGKKLTTQIFFGPTYYQRLKHMVDDKIHSRARGPIQMMNRQPMEGRAR 1086



 Score =  110 bits (274), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 68/177 (38%), Positives = 101/177 (57%), Gaps = 17/177 (9%)

Query: 174 ADKIIPKIKAAQFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYI 232
           A K I K      D+   ++  TIT  L  ++ TGNW   ++    R GV+QVL+RL+Y 
Sbjct: 426 AQKYINKNDDFALDVC--VKTSTITRGLAYSLATGNWGDQKKAHQSRAGVSQVLNRLTYT 483

Query: 233 SGLGMMTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTEN 292
           + L  + R NS   +  K++ PR L  +QWGM+CP++TPEG+A GLVKNLALM +I+  +
Sbjct: 484 ATLSHLRRANSPIGREGKLAKPRQLHNTQWGMVCPAETPEGQAVGLVKNLALMAYISVGS 543

Query: 293 DEKNMLKIMYNIGIEHIAMFNGEELSSPGVY---LVFVNGILAGITCHHKEVCKPEI 346
             + +L+ +     E  +M N EE+S   +     +FVNG   GI   H+E   PE+
Sbjct: 544 LPEPILEFL-----EEWSMENLEEVSPSAIADATKIFVNGAWVGI---HRE---PEL 589



 Score =  101 bits (252), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 55/135 (40%), Positives = 75/135 (55%), Gaps = 18/135 (13%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPG----VTTHLEIAPFTLLGVCAGIELLQ 747
           + D +  G +E +D  E   S IA+    +R G      TH EI P  +LGVCA I    
Sbjct: 661 WSDLVGNGVVELIDSMEEETSMIAMMPEDLRSGGYCDTYTHCEIHPAMILGVCASI---- 716

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                     +P+P HNQ+PRNTYQ AMGKQAMG    N   R+DTL + L Y Q+P+V 
Sbjct: 717 ----------IPFPDHNQSPRNTYQSAMGKQAMGVYTTNFHVRMDTLAHVLYYPQKPLVT 766

Query: 808 SKTIRITNFHKLPAG 822
           ++++    F++LPAG
Sbjct: 767 TRSMEYLRFNELPAG 781



 Score = 59.7 bits (143), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 46/80 (57%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           AR+ L    + H+ V       KA ++  M+ R++LA      LDDRD+ GNKRL+LAG 
Sbjct: 346 AREILQKELLPHVGVSEHCETKKAFFIGYMVHRLLLAALGRRELDDRDHIGNKRLDLAGP 405

Query: 516 LLSLMFEDVFKRFNSELKET 535
           LL+ +F  +F+    E++ T
Sbjct: 406 LLAFLFRALFRNLLKEMRMT 425



 Score = 47.8 bits (112), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 38/58 (65%), Gaps = 4/58 (6%)

Query: 358 PHECRLRDLTYSAPITVDIE--YTRGS--QRVVRSDLVIGRMPIMLQSSKCVLRNKTE 411
           P+E RLR+LTY++P+ VDI    TR       V   + +G++P+ML+SS C+L N T+
Sbjct: 118 PNEARLRNLTYASPLYVDITKVVTRDESVNEKVYEKVFVGKVPVMLRSSYCMLSNMTD 175


>gi|52699792|gb|AAU86958.1| DNA-dependent RNA polymerase II second largest subunit [Calicium
            viride]
          Length = 714

 Score =  212 bits (540), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 99/263 (37%), Positives = 161/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMG QAMG        R++T+ + L Y Q+P+  ++++    F
Sbjct: 364  IIPFPDHNQSPRNTYQSAMGXQAMGXXXXXXDQRMETMAHILYYPQKPLATTRSMEFLKF 423

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR+     K+    T ++ 
Sbjct: 424  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMNTLEQF 483

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEY--- 1090
              P+     R     +  LD+DGI+ PG ++    +++ K+ P  + +       +Y   
Sbjct: 484  EKPMRSDTLRLKHGTYEKLDEDGIIIPGARVSGEDIIIGKTAPIPADAEELGQRTKYHSK 543

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++     + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHGQKG IG+  
Sbjct: 544  RDASTPLRSTESGLVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGITY 603

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   G+ PD+I+NPH +
Sbjct: 604  RQEDMPFTSEGVVPDLIINPHAI 626



 Score =  159 bits (401), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 86/238 (36%), Positives = 128/238 (53%), Gaps = 11/238 (4%)

Query: 1124 LRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESGICPDIIMNPHGLKG 1175
            L Q  +P   D    +HG      + G+I  G  V  ED+   ++   P    +   L  
Sbjct: 480  LEQFEKPMRSDTLRLKHGTYEKLDEDGIIIPGARVSGEDIIIGKTAPIP---ADAEELGQ 536

Query: 1176 CDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1235
              +    ++     + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHGQK
Sbjct: 537  RTKYHSKRDASTPLRSTESGLVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQK 596

Query: 1236 GVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAF 1295
            G IG+   QEDMPF   G+ PD+I+NPH  PSRMT+  LIE    K   + G   + T F
Sbjct: 597  GTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPF 656

Query: 1296 GGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHA 1353
                +  V   L  HGY  +G ++ Y+G TG  L A ++ GP YYQ+L+HMV DKI A
Sbjct: 657  TEVTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIXA 714



 Score =  101 bits (251), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 86/151 (56%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW   ++    + GV+QVL R +  S L  + R N+
Sbjct: 40  EFNLTLGVKSTTITNGLKYSLATGNWGEQKKASSSKAGVSQVLXRFTXASTLSHLRRTNT 99

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLV   ALM  ++       +++ +  
Sbjct: 100 PIGRDGKIAKPRQLXNTHWGLVCPAETPEGQACGLVXXXALMCXVSVGTPVDGIVEFLLQ 159

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
             +E +  ++   L+SP    +F+NG+  GI
Sbjct: 160 RQMETLEEYD--PLTSPXATKIFLNGVWVGI 188



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/100 (40%), Positives = 57/100 (57%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMG QAMG     
Sbjct: 348 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGXQAMGXXXXX 393

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R++T+ + L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 394 XDQRMETMAHILYYPQKPLATTRSMEFLKFRELPAGQNAI 433


>gi|52699808|gb|AAU86966.1| DNA-dependent RNA polymerase II second largest subunit [Diploschistes
            scruposus]
          Length = 713

 Score =  212 bits (540), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 104/263 (39%), Positives = 158/263 (60%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMG QAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 363  IIPFPDHNQSPRNTYQSAMGXQAMGVFLTNFDERMDTMANILYYPQKPLATTRSMEFLKF 422

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R L YR      K+      ++ 
Sbjct: 423  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYVEQEKRVGMSLVEQF 482

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAISMATPEY-- 1090
              PL     R     +  LD DG++APG ++    V++ K+ P       +   T  +  
Sbjct: 483  EKPLRSETLRLKHGTYEKLDDDGLIAPGVRVSGEDVIIGKTAPIAPDTDELGQRTKLHSK 542

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++     + +    ++KVL+++N E    +K+ +R T+ P+IGDKF+SRHGQKG IG+  
Sbjct: 543  RDASTPLRSTENGIVDKVLLTTNQEGLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITY 602

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PD+I+NPH +
Sbjct: 603  RQEDMPFTAEGITPDLIINPHAI 625



 Score =  157 bits (396), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 88/240 (36%), Positives = 129/240 (53%), Gaps = 13/240 (5%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESG-ICPDIIMNPHGL 1173
            L+ Q  +P   +    +HG        G+I  G+ V  ED+   ++  I PD       L
Sbjct: 478  LVEQFEKPLRSETLRLKHGTYEKLDDDGLIAPGVRVSGEDVIIGKTAPIAPDT----DEL 533

Query: 1174 KGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
                ++   ++     + +    ++KVL+++N E    +K+ +R T+ P+IGDKF+SRHG
Sbjct: 534  GQRTKLHSKRDASTPLRSTENGIVDKVLLTTNQEGLKFVKVRMRTTKIPQIGDKFASRHG 593

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGT 1293
            QKG IG+   QEDMPF   GI PD+I+NPH  PSRMT+  LIE    K   + G   + T
Sbjct: 594  QKGTIGITYRQEDMPFTAEGITPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDAT 653

Query: 1294 AFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHA 1353
             F    +  V   L  HGY  +G ++ Y+G TG  L A ++ GP YYQ+L+HMV  KI A
Sbjct: 654  PFTDVTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLRAQVFFGPTYYQRLRHMVDXKIXA 713



 Score =  116 bits (290), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 56/150 (37%), Positives = 94/150 (62%), Gaps = 3/150 (2%)

Query: 186 FDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINSQ 244
           F+I   ++  T+TN L  ++ TGNW+ ++   + + GV+QVL+R ++ S L  + R N+ 
Sbjct: 41  FNIALGVKSTTLTNGLKYSLATGNWSEQKKAAQGKAGVSQVLNRYTFASTLSHLRRTNTP 100

Query: 245 FEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNI 304
             +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT  +  + +++ M   
Sbjct: 101 LGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGSPGEPIIEFMVQR 160

Query: 305 GIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            +E +  +  E   SP +  VFVNG+  G+
Sbjct: 161 NMEVLEEY--EPTRSPNITKVFVNGVWVGV 188



 Score = 88.2 bits (217), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/100 (42%), Positives = 57/100 (57%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMG QAMG    N
Sbjct: 347 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGXQAMGVFLTN 392

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 393 FDERMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 432


>gi|358030894|dbj|BAL15356.1| RNA polymerase II second largest subunit, partial [Olpidium
            bornovanus]
          Length = 895

 Score =  212 bits (540), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 111/279 (39%), Positives = 162/279 (58%), Gaps = 19/279 (6%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DTL   L Y Q+P+  ++ +    F
Sbjct: 530  IIPFPDHNQSPRNTYQSAMGKQAMGIYALNYXARMDTLANILYYPQKPLATTRAMNYLQF 589

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
              LPAGQNA IA+  YSGY+ ED++IMN++++DRG  R L YR+     K+  + +  R 
Sbjct: 590  RHLPAGQNAIIAIACYSGYNQEDSVIMNQSAIDRGLFRSLYYRSYMDQEKKVVSVSGARC 649

Query: 1034 LGPL-----------LEADTRKPVYR--HRALDQ---DGIVAPGEQICERQVLVNKSMPT 1077
             GP             E  TR+   R  H   D+   DG++APG ++    +++ K+ P 
Sbjct: 650  AGPRACHSGTTVMESFEKPTRETTLRLKHGTYDKIEIDGLIAPGTRVSGEDIIIGKTTPI 709

Query: 1078 ISVS---AISMATPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGD 1134
               S        T   ++     K +    +++V+V++NSE    +K+ +R TR P+IGD
Sbjct: 710  PPDSEELGQRQDTHTKRDASTPLKSTETGIVDQVMVTTNSEGLKFVKVRVRSTRVPQIGD 769

Query: 1135 KFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            KF+SRHGQKG IG+   QEDMPF   G+ PD+I+NPH +
Sbjct: 770  KFASRHGQKGTIGITYRQEDMPFTADGLTPDLIINPHAI 808



 Score =  164 bits (416), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 76/169 (44%), Positives = 106/169 (62%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++     K +    +++V+V++NSE    +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 726  RDASTPLKSTETGIVDQVMVTTNSEGLKFVKVRVRSTRVPQIGDKFASRHGQKGTIGITY 785

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   G+ PD+I+NPH  PSRMT+G L+E L  K   + G+  + T F    +  
Sbjct: 786  RQEDMPFTADGLTPDLIINPHAIPSRMTIGHLVECLLSKVSTLGGSEGDATPFTNVTVES 845

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKI 1351
            +   L  HGY  +G ++ Y G TG  L A I+ GP YYQ+LKHMV DKI
Sbjct: 846  ISAALEAHGYQKRGFEVMYHGHTGRKLGAQIFLGPTYYQRLKHMVDDKI 894



 Score =  105 bits (263), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 104/189 (55%), Gaps = 10/189 (5%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++ + ITN L  ++ TGNW  ++  M+ R GV+QVL+R ++ S L  + R N+
Sbjct: 188 EFNLTLAVKSNHITNGLKYSLATGNWGDQQRAMQSRAGVSQVLNRYTFASTLSHLRRCNT 247

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNL+++++++       + +I   
Sbjct: 248 PIGRDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSMLSYVSVGAKSHVVRQIFEE 307

Query: 304 IGIEHIAMFNGE-ELSSPGVYLVFVNGILAGITCHHKEV--------CKPEIEESFNYTR 354
            G++++   + E E        VF+NG   G+     ++        C+P+     ++ R
Sbjct: 308 SGVQYLDESDQEMEQLRLDTIKVFLNGGWVGMISDPTKLLQALRGLKCQPDRNFEISFVR 367

Query: 355 QTTPHECRL 363
                E R+
Sbjct: 368 DVRDREIRV 376



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/100 (44%), Positives = 56/100 (56%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH E+ P  +LGVCA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 514 THCEVHPAMILGVCASI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYALN 559

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DTL   L Y Q+P+  ++ +    F  LPAG+  I
Sbjct: 560 YXARMDTLANILYYPQKPLATTRAMNYLQFRHLPAGQNAI 599



 Score = 55.1 bits (131), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 52/92 (56%), Gaps = 14/92 (15%)

Query: 478 KAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSEL----- 532
           K+ +   MI R+ +A  +   LDDRD+YG KR++LAG L+S +F ++F++  +++     
Sbjct: 121 KSFFFGYMIHRLCMAALERRELDDRDHYGKKRMDLAGPLISGLFRNLFRKMTTDIGAHLR 180

Query: 533 ------KETNLSGVV---NLVSGWWFELKYGN 555
                 +E NL+  V   ++ +G  + L  GN
Sbjct: 181 KCMDQNREFNLTLAVKSNHITNGLKYSLATGN 212


>gi|289193124|ref|YP_003459065.1| DNA-directed RNA polymerase subunit B [Methanocaldococcus sp.
            FS406-22]
 gi|288939574|gb|ADC70329.1| DNA-directed RNA polymerase subunit B [Methanocaldococcus sp.
            FS406-22]
          Length = 633

 Score =  212 bits (540), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 110/264 (41%), Positives = 158/264 (59%), Gaps = 3/264 (1%)

Query: 913  GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
            G+ PYP HN APR T   AMGKQ++G    N + R+DT  + L Y Q P+V +K   I  
Sbjct: 139  GVAPYPEHNSAPRITMAAAMGKQSLGIPMSNIKWRLDTRGHYLHYPQVPIVRTKHQEILG 198

Query: 973  FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
            F K PAGQN  +A+MSY GY++EDA++ NK+++DRG GR   +R      ++YP    DR
Sbjct: 199  FDKRPAGQNFVVAIMSYEGYNMEDAIVFNKSAIDRGLGRSTFFRTYDACERRYPGGQMDR 258

Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPT--ISVSAISM-ATPE 1089
               P       +    ++ L++DGI A    +    V+V K+ P   +    I++   P+
Sbjct: 259  FEIPDKGVRGYRSEEAYKYLEEDGIAAVEAHVKGGDVIVGKTSPPRFLEEHEITIQVKPQ 318

Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             ++  V  +     Y++KV+++   E   L+K+ +R  R PE+GDKF+SRHGQKGVIGL 
Sbjct: 319  RRDSSVVVRHGEEGYIDKVILTETKEGNRLVKVKVRDLRIPELGDKFASRHGQKGVIGLT 378

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
            V QED+PF ESGI PDII+NPH +
Sbjct: 379  VPQEDLPFTESGIVPDIIINPHAI 402



 Score =  204 bits (519), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 99/178 (55%), Positives = 126/178 (70%)

Query: 1195 SYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGI 1254
             Y++KV+++   E   L+K+ +R  R PE+GDKF+SRHGQKGVIGL V QED+PF ESGI
Sbjct: 332  GYIDKVILTETKEGNRLVKVKVRDLRIPELGDKFASRHGQKGVIGLTVPQEDLPFTESGI 391

Query: 1255 CPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNY 1314
             PDII+NPH  PSRMTVG+L+E+L GK G +EG   +GT F G K  D+++ L   G+ +
Sbjct: 392  VPDIIINPHAIPSRMTVGQLLEMLGGKVGALEGRRIDGTIFSGEKEWDLRKALEALGFKH 451

Query: 1315 QGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
             GK++ Y G TG+  E  IY G  YYQKL H+V  KIHARSRGP  VLTRQPT  R +
Sbjct: 452  HGKEVMYDGKTGKKFEVEIYIGIAYYQKLHHLVAGKIHARSRGPVQVLTRQPTEGRAR 509



 Score = 97.1 bits (240), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 56/132 (42%), Positives = 73/132 (55%), Gaps = 15/132 (11%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKR 751
           F D + EG IEYLD  E  +++IA+SE  +     THLEI P T+LG+ AG+        
Sbjct: 90  FSDLVKEGIIEYLDAEEEENAYIALSEEELTEK-HTHLEIDPLTILGIGAGV-------- 140

Query: 752 FHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTI 811
                  PYP HN APR T   AMGKQ++G    N + R+DT  + L Y Q P+V +K  
Sbjct: 141 ------APYPEHNSAPRITMAAAMGKQSLGIPMSNIKWRLDTRGHYLHYPQVPIVRTKHQ 194

Query: 812 RITNFHKLPAGK 823
            I  F K PAG+
Sbjct: 195 EILGFDKRPAGQ 206


>gi|375083053|ref|ZP_09730091.1| DNA-directed RNA polymerase subunit B [Thermococcus litoralis DSM
            5473]
 gi|374742289|gb|EHR78689.1| DNA-directed RNA polymerase subunit B [Thermococcus litoralis DSM
            5473]
          Length = 1118

 Score =  212 bits (540), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 111/266 (41%), Positives = 163/266 (61%), Gaps = 8/266 (3%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            LVPYP HN APRNTY   M KQ++G    N + R+DT  + + Y Q P+V S+ +    F
Sbjct: 651  LVPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLMHYPQIPLVNSRIMEAVGF 710

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR- 1032
             + PAGQN  +AV+SY GY++EDA+IMNKAS++RG  R   +R  +   K+Y     D+ 
Sbjct: 711  EQRPAGQNFVVAVLSYGGYNMEDAVIMNKASIERGLARSTFFRTYEAEEKKYMGGQTDKF 770

Query: 1033 -ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISV---SAISMATP 1088
             I  P +     +  YRH  LD+DGI+ P  ++  + VLV ++ P   +   + +     
Sbjct: 771  EIPDPTVRGFLGEKYYRH--LDEDGIIFPESKVEGKDVLVARTSPPRFLEEQAGLGAGIL 828

Query: 1089 E-YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
            +  +E  ++ +      ++KV+++   +   L+K+ +R  R PE GDKF+SRHGQKGVIG
Sbjct: 829  QGRRETSITMRPGEKGIVDKVILTETGDGTKLVKVTVRDLRIPEFGDKFASRHGQKGVIG 888

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            LIV QEDMP+ ESGI PD+I+NPHG+
Sbjct: 889  LIVPQEDMPWTESGIVPDLIVNPHGI 914



 Score =  198 bits (503), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 97/188 (51%), Positives = 132/188 (70%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            +E  ++ +      ++KV+++   +   L+K+ +R  R PE GDKF+SRHGQKGVIGLIV
Sbjct: 832  RETSITMRPGEKGIVDKVILTETGDGTKLVKVTVRDLRIPEFGDKFASRHGQKGVIGLIV 891

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMP+ ESGI PD+I+NPHG PSRMTVG+LIE + GK   ++G   +GTAF G     
Sbjct: 892  PQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLIEAIGGKVASLKGRRIDGTAFIGEPEEK 951

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
            +++EL   G+ + G+++ Y GITG  LEA I+ G +YYQ+L HMV DK+HARSRGP  VL
Sbjct: 952  LRKELEELGFRHNGREVMYDGITGRKLEADIFVGVIYYQRLHHMVADKLHARSRGPVQVL 1011

Query: 1363 TRQPTGRR 1370
            T+QPT  R
Sbjct: 1012 TKQPTEGR 1019



 Score =  105 bits (261), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/146 (36%), Positives = 85/146 (58%), Gaps = 9/146 (6%)

Query: 188 IVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEK 247
           + N +R D +T  +  A+ TG W        R GV+Q+L R +++S L  + R+ S   +
Sbjct: 391 VRNSVRPDVLTERIEHALATGAWP-----GGRTGVSQLLDRTNFMSTLSHLRRVTSPLSR 445

Query: 248 TRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIE 307
            +     R L G+ WG +CP++TPEG  CGLVKNLALM+ ITT   E+ +L+ + ++GI 
Sbjct: 446 EQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMSQITTAIPEEEVLEYLESLGIV 505

Query: 308 HIAMFNGEELSSPGVYLVFVNGILAG 333
           HI     E+   P  + +++NG+L G
Sbjct: 506 HIE----EKRPEPEDWRIYLNGVLIG 527



 Score = 84.7 bits (208), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/136 (36%), Positives = 70/136 (51%), Gaps = 15/136 (11%)

Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
           G  ++ D +  G IEYLD  E  ++++A     +     THLEI P  +LG+ A      
Sbjct: 597 GTLKWSDLVRMGVIEYLDAEEEENAYVATWPWEVTKE-HTHLEIMPAAILGLPAS----- 650

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                    LVPYP HN APRNTY   M KQ++G    N + R+DT  + + Y Q P+V 
Sbjct: 651 ---------LVPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLMHYPQIPLVN 701

Query: 808 SKTIRITNFHKLPAGK 823
           S+ +    F + PAG+
Sbjct: 702 SRIMEAVGFEQRPAGQ 717



 Score = 42.4 bits (98), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 38/59 (64%), Gaps = 1/59 (1%)

Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
           D W+++ S+  EKGLV+ H+DS++ FI+  +++++     +  D+ P F +K+  I +G
Sbjct: 13  DLWEVMKSYWDEKGLVRQHLDSYNAFIDHGMQEVVNEFGGVKPDI-PDFEVKFGRIRLG 70



 Score = 42.0 bits (97), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 40/65 (61%), Gaps = 2/65 (3%)

Query: 343 KPEIEESFNYTRQTTPHECRLRDLTYSAPITVD-IEYTRGSQRVVRSDLVIGRMPIMLQS 401
           +PE +E+    +   P + R+R+LTYSAPI ++ I   +G ++    ++ IG +P+ML+S
Sbjct: 71  EPEFQEAHGQRKPLYPMDARIRNLTYSAPIFLEMIPVVKGIEQEP-VEVRIGELPVMLKS 129

Query: 402 SKCVL 406
             C L
Sbjct: 130 KICRL 134


>gi|341896020|gb|EGT51955.1| CBN-RPB-2 protein [Caenorhabditis brenneri]
          Length = 1195

 Score =  212 bits (540), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 107/266 (40%), Positives = 168/266 (63%), Gaps = 9/266 (3%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DTL + L Y Q+P+V ++++    F
Sbjct: 714  IIPFPDHNQSPRNTYQSAMGKQAMGVYTTNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRF 773

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
            ++LPAG NA +A++SYSGY+ ED++IMN +++DRG  R + YR+ +       N   + I
Sbjct: 774  NELPAGINAIVAILSYSGYNQEDSVIMNNSAIDRGLFRSVFYRSYRDNEANLDNANEELI 833

Query: 1034 LGPLLE--ADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKS--MPTI--SVSAISMAT 1087
              P  E  +  R  +Y    LD+DGI++PG ++    V++ K+  +P I   + A     
Sbjct: 834  EKPTREKCSGMRHALYDK--LDEDGIISPGMRVSGDDVIIGKTVALPDIDDDLDATGKKY 891

Query: 1088 PEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
            P+ ++     + S    +++V++S N++    +K+ +R  R P+IGDKF+SRHGQKG +G
Sbjct: 892  PK-RDASTFLRSSETGIVDQVMLSLNNDGNKFVKIRMRSVRLPQIGDKFASRHGQKGTMG 950

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            ++  QEDMPF   G+ PDII+NPH +
Sbjct: 951  IMYRQEDMPFTAEGLTPDIIINPHAV 976



 Score =  180 bits (457), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 95/236 (40%), Positives = 142/236 (60%), Gaps = 10/236 (4%)

Query: 1142 QKGVI--GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEK 1199
            + G+I  G+ V  +D+   ++   PDI      L    +    ++     + S    +++
Sbjct: 854  EDGIISPGMRVSGDDVIIGKTVALPDI---DDDLDATGKKYPKRDASTFLRSSETGIVDQ 910

Query: 1200 VLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDII 1259
            V++S N++    +K+ +R  R P+IGDKF+SRHGQKG +G++  QEDMPF   G+ PDII
Sbjct: 911  VMLSLNNDGNKFVKIRMRSVRLPQIGDKFASRHGQKGTMGIMYRQEDMPFTAEGLTPDII 970

Query: 1260 MNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQE---ELIRHGYNYQG 1316
            +NPH  PSRMT+G LIE L GK    +G   + T F  T  V+VQ+    L  +GY+ +G
Sbjct: 971  INPHAVPSRMTIGHLIECLQGKLSANKGEIGDATPFNDT--VNVQKISGLLCEYGYHLRG 1028

Query: 1317 KDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
             ++ Y+G TG+ L   I+ GP YYQ+LKHMV DKIH+R+RGP  ++ RQP   R +
Sbjct: 1029 NEVMYNGHTGKKLTTQIFFGPTYYQRLKHMVDDKIHSRARGPIQMMNRQPMEGRAR 1084



 Score =  108 bits (271), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/171 (38%), Positives = 98/171 (57%), Gaps = 14/171 (8%)

Query: 174 ADKIIPKIKAAQFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYI 232
           A K I K      D+   ++  TIT  L  ++ TGNW   ++    R GV+QVL+RL+Y 
Sbjct: 424 AQKYINKNDDFALDVC--VKTSTITRGLAYSLATGNWGDQKKAHQSRAGVSQVLNRLTYT 481

Query: 233 SGLGMMTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTEN 292
           + L  + R NS   +  K++ PR L  +QWGM+CP++TPEG+A GLVKNLALM +I+  +
Sbjct: 482 ATLSHLRRANSPIGREGKLAKPRQLHNTQWGMVCPAETPEGQAVGLVKNLALMAYISVGS 541

Query: 293 DEKNMLKIMYNIGIEHIAMFNGEELSSPGV---YLVFVNGILAGITCHHKE 340
             + +L+ +     E  +M N EE+S   +     +FVNG   GI   H+E
Sbjct: 542 LPEPILEFL-----EEWSMENLEEVSPSSISDATKIFVNGSWVGI---HRE 584



 Score =  100 bits (250), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 55/135 (40%), Positives = 75/135 (55%), Gaps = 18/135 (13%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPG----VTTHLEIAPFTLLGVCAGIELLQ 747
           + D +  G +E +D  E   S IA+    +R G      TH EI P  +LGVCA I    
Sbjct: 659 WSDLVGGGVVELIDSMEEETSMIAMMPEDLRTGGYCDTHTHCEIHPAMILGVCASI---- 714

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                     +P+P HNQ+PRNTYQ AMGKQAMG    N   R+DTL + L Y Q+P+V 
Sbjct: 715 ----------IPFPDHNQSPRNTYQSAMGKQAMGVYTTNFHVRMDTLAHVLYYPQKPLVT 764

Query: 808 SKTIRITNFHKLPAG 822
           ++++    F++LPAG
Sbjct: 765 TRSMEYLRFNELPAG 779



 Score = 59.7 bits (143), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 46/80 (57%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           AR+ L    + H+ V       KA ++  M+ R++LA      LDDRD+ GNKRL+LAG 
Sbjct: 344 AREILQKELLPHVGVSEHCETKKAFFIGYMVHRLLLAALGRRELDDRDHIGNKRLDLAGP 403

Query: 516 LLSLMFEDVFKRFNSELKET 535
           LL+ +F  +F+    E++ T
Sbjct: 404 LLAFLFRALFRNLLKEMRMT 423



 Score = 49.3 bits (116), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 39/58 (67%), Gaps = 4/58 (6%)

Query: 358 PHECRLRDLTYSAPITVDIE--YTRGSQRV--VRSDLVIGRMPIMLQSSKCVLRNKTE 411
           P+E RLR+LTY++P+ VDI    TR    V  V   + +G++P+ML+SS C+L N T+
Sbjct: 116 PNEARLRNLTYASPLYVDITKVVTRDDSVVEKVYEKVFVGKVPVMLRSSYCMLSNMTD 173


>gi|45120578|gb|AAO64677.2| RNA polymerase II subunit RPB2, partial [Henningsomyces candidus]
          Length = 848

 Score =  212 bits (540), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 105/263 (39%), Positives = 162/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 516  IIPFPDHNQSPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILFYPQKPLATTRSMEYLKF 575

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K+      +  
Sbjct: 576  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVAQLEEF 635

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS-AISMATPEY-- 1090
              P  +   R     +  LD+DG+++PG  +    +++ K+ P    S  +   T  +  
Sbjct: 636  EKPTRDNTLRMKHGTYDKLDEDGLISPGVGVSGEDIIIGKTAPIPPDSEELGQRTRLHTR 695

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+++NSE    +K+ +R  R P+IGDKF+SRHGQKG IG+  
Sbjct: 696  RDVSTPLKSTENGKIDQVLITTNSEGQKFVKVRIRSIRIPQIGDKFASRHGQKGTIGITY 755

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PDII+NPH +
Sbjct: 756  RQEDMPFTREGIVPDIIINPHAI 778



 Score =  140 bits (353), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 79/219 (36%), Positives = 118/219 (53%), Gaps = 11/219 (5%)

Query: 1124 LRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESGICPDIIMNPHGLKG 1175
            L +  +P   +    +HG      + G+I  G+ V  ED+   ++   P    +   L  
Sbjct: 632  LEEFEKPTRDNTLRMKHGTYDKLDEDGLISPGVGVSGEDIIIGKTAPIPP---DSEELGQ 688

Query: 1176 CDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1235
              R+   ++V    K +    +++VL+++NSE    +K+ +R  R P+IGDKF+SRHGQK
Sbjct: 689  RTRLHTRRDVSTPLKSTENGKIDQVLITTNSEGQKFVKVRIRSIRIPQIGDKFASRHGQK 748

Query: 1236 GVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAF 1295
            G IG+   QEDMPF   GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F
Sbjct: 749  GTIGITYRQEDMPFTREGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLLGNEGDATPF 808

Query: 1296 GGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIY 1334
                +  V   L + GY  +G ++ Y G TG  L+A +Y
Sbjct: 809  TELTVESVSTYLRQKGYQSRGLEVMYHGHTGRKLQAQVY 847



 Score =  110 bits (274), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 90/151 (59%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW  ++  M  + GV+QVL+R +Y S L  + R N+
Sbjct: 209 EFNLALAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT 268

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM  I+  +    +++ +  
Sbjct: 269 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMACISVGSLSAPVIEFLEE 328

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E +        S+     VFVNG+  G+
Sbjct: 329 WGLESL---EDNAHSTVPCTKVFVNGVWMGV 356



 Score = 87.4 bits (215), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 500 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGIFLTN 545

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 546 FLIRMDTMANILFYPQKPLATTRSMEYLKFRELPAGQNAI 585



 Score = 59.3 bits (142), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 59/114 (51%), Gaps = 14/114 (12%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           A++ L    I H+ +       KA +   MI R++LA  +   LDDRD++G KRL+LAG 
Sbjct: 120 AQEILQKEMIPHVSMAEGSESKKAYFFGYMIHRLLLAALERRELDDRDHFGKKRLDLAGP 179

Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYGN 555
           LL+ +F  +F++ + ++           KE NL+  V    + +G  + L  GN
Sbjct: 180 LLANLFRMLFRKLSKDVYRYLQKCVEAQKEFNLALAVKHQTITNGLKYSLATGN 233


>gi|2736117|gb|AAB94059.1| RPB140 [Hordeum vulgare]
          Length = 555

 Score =  212 bits (540), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 109/261 (41%), Positives = 159/261 (60%), Gaps = 1/261 (0%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +    F
Sbjct: 208  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLLF 267

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L +R+ +   K+      +  
Sbjct: 268  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEEF 327

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYK-E 1092
              P  E         +  LD DG+  PG ++    V++ K+ P     A   AT   K +
Sbjct: 328  GRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIPQDDAQGQATRYSKRD 387

Query: 1093 VPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQ 1152
               S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   Q
Sbjct: 388  HSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQ 447

Query: 1153 EDMPFNESGICPDIIMNPHGL 1173
            EDMP+   GI PDII+NPH +
Sbjct: 448  EDMPWTIEGITPDIIVNPHAI 468



 Score =  160 bits (405), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 76/166 (45%), Positives = 106/166 (63%)

Query: 1187 VSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQED 1246
             S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG +G+   QED
Sbjct: 390  TSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 449

Query: 1247 MPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEE 1306
            MP+   GI PDII+NPH  PSRMT+G+LIE + GK     G   + T F    +  + + 
Sbjct: 450  MPWTIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDHISKA 509

Query: 1307 LIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIH 1352
            L + GY  +G +  Y+G TG  L A I+ GP YYQ+LKHMV DKIH
Sbjct: 510  LHKCGYQMRGFETMYNGHTGRKLTAMIFLGPTYYQRLKHMVDDKIH 555



 Score = 99.4 bits (246), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/141 (41%), Positives = 77/141 (54%), Gaps = 24/141 (17%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVS-----ESGIRPG-----VTTHLEIAPFTLLGVCA 741
           + D + +G IEY+D  E   + I+++      S   PG       TH EI P  +LGVCA
Sbjct: 147 WHDLVAKGFIEYIDTEEEETTMISMTIRDLETSRHNPGEAYSETYTHCEIHPSLILGVCA 206

Query: 742 GIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYA 801
            I              +P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y 
Sbjct: 207 SI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYP 252

Query: 802 QRPMVESKTIRITNFHKLPAG 822
           Q+P+V ++ +    F +LPAG
Sbjct: 253 QKPLVTTRAMEHLLFRQLPAG 273



 Score = 70.1 bits (170), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 36/76 (47%), Positives = 47/76 (61%), Gaps = 8/76 (10%)

Query: 262 WGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMFNGEELSS-- 319
           WGM+CP++TPEG+ACGLVKNLALM +IT  +    +L+ +   G E     N EE+S   
Sbjct: 1   WGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWGTE-----NFEEISPAV 55

Query: 320 -PGVYLVFVNGILAGI 334
            P    +FVNG   GI
Sbjct: 56  IPQAAKIFVNGCWVGI 71


>gi|89274920|gb|ABD65901.1| RNA polymerase II second largest subunit, partial [Piriformospora
            indica]
          Length = 654

 Score =  212 bits (540), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 105/263 (39%), Positives = 160/263 (60%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            +VP+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++ +    F
Sbjct: 342  IVPFPDHNQSPRNTYQSAMGKQAMGISLSNFLVRMDTMANILYYPQKPLATTRALEWLKF 401

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
              LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K     T +  
Sbjct: 402  RDLPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDMEKTAGQITLEEF 461

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS-AISMATPEY-- 1090
              P  +   R     +  LD DG++APG  +    +++ K+ P    S  +   T  +  
Sbjct: 462  EKPSRDTTLRMKHGNYDKLDDDGLIAPGMNVIGEDIIIGKTAPLPPDSQELGQRTDRHTR 521

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    ++ VL++ + E +  +K+ +R TR P++GDKF+SRHGQKG IG++ 
Sbjct: 522  RDVSTPLKSTESGIIDHVLITVDGEGSKFVKIRVRSTRIPQVGDKFASRHGQKGTIGILY 581

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF+  GI PD+I+NPH +
Sbjct: 582  RQEDMPFSADGIVPDLIINPHAI 604



 Score =  118 bits (296), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 57/136 (41%), Positives = 82/136 (60%), Gaps = 1/136 (0%)

Query: 1177 DRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKG 1236
            DR T  ++V    K +    ++ VL++ + E +  +K+ +R TR P++GDKF+SRHGQKG
Sbjct: 517  DRHTR-RDVSTPLKSTESGIIDHVLITVDGEGSKFVKIRVRSTRIPQVGDKFASRHGQKG 575

Query: 1237 VIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFG 1296
             IG++  QEDMPF+  GI PD+I+NPH  PSRMT+G L+E L  K   + G   + T F 
Sbjct: 576  TIGILYRQEDMPFSADGIVPDLIINPHAIPSRMTIGHLVECLLSKVATLNGQEGDATPFT 635

Query: 1297 GTKLVDVQEELIRHGY 1312
               +  V   L   GY
Sbjct: 636  DLTVEQVSHALRAAGY 651



 Score =  104 bits (260), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 56/156 (35%), Positives = 91/156 (58%), Gaps = 7/156 (4%)

Query: 186 FDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINSQ 244
           FD+   ++  TI+N L  ++ TGNW  ++  M  + G +QVL+R +Y S L  + R N+ 
Sbjct: 42  FDVGRAIKLGTISNGLKYSLATGNWGDQQNAMSSKAGXSQVLNRYTYASTLSHLRRTNTP 101

Query: 245 FEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNI 304
             +  K++ PR L  + WGM+CP++TPEG+ACGLVKNL+LM  I+  +    + + +   
Sbjct: 102 LGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMACISVGSYSAPVGEFLDEW 161

Query: 305 GIEHIAMFNGEELSSPGVYLVFVNGILAGITCHHKE 340
           G+E  A+    +   P    VF+NG+  G+   H+E
Sbjct: 162 GME--ALEENAQSDRPSTK-VFLNGVWMGV---HRE 191



 Score = 90.5 bits (223), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 57/161 (35%), Positives = 75/161 (46%), Gaps = 39/161 (24%)

Query: 691 RFDDFLYEGKIEYLDVNEGNDSHIAVS-------ESG------------------IRPGV 725
           R+D+   +G +E LD  E     I +S        SG                  I+ G 
Sbjct: 265 RWDNLFKDGVVELLDAEEEETVMICMSPEDLDARSSGQVYHTEDMYDPSSRVKTIIKAGS 324

Query: 726 TTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGY 785
            +H EI P  +LGVCA I              VP+P HNQ+PRNTYQ AMGKQAMG    
Sbjct: 325 YSHCEIHPSMILGVCASI--------------VPFPDHNQSPRNTYQSAMGKQAMGISLS 370

Query: 786 NQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
           N   R+DT+   L Y Q+P+  ++ +    F  LPAG+  I
Sbjct: 371 NFLVRMDTMANILYYPQKPLATTRALEWLKFRDLPAGQNAI 411


>gi|308487676|ref|XP_003106033.1| CRE-RPB-2 protein [Caenorhabditis remanei]
 gi|308254607|gb|EFO98559.1| CRE-RPB-2 protein [Caenorhabditis remanei]
          Length = 1207

 Score =  212 bits (540), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 105/264 (39%), Positives = 166/264 (62%), Gaps = 5/264 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DTL + L Y Q+P+V ++++    F
Sbjct: 730  IIPFPDHNQSPRNTYQSAMGKQAMGVYTTNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRF 789

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
            ++LPAG NA +A++SYSGY+ ED++IMN +++DRG  R + YR+ +       N   + I
Sbjct: 790  NELPAGINAIVAILSYSGYNQEDSVIMNNSAIDRGLFRSVFYRSYRDNEANLDNANEELI 849

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKS--MPTI--SVSAISMATPE 1089
              P  E  +      +  LD+DGI++PG ++    V++ K+  +P I   + A     P+
Sbjct: 850  EKPTREKCSGMRHSLYDKLDEDGIISPGMRVSGDDVIIGKTVALPDIDDDLDATGKKYPK 909

Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
             ++     + S    +++V++S N++    +K+ +R  R P+IGDKF+SRHGQKG +G++
Sbjct: 910  -RDASTFLRSSETGIVDQVMLSLNNDGNKFVKIRMRSVRLPQIGDKFASRHGQKGTMGIM 968

Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
              QEDMPF   G+ PDII+NPH +
Sbjct: 969  YRQEDMPFTAEGLTPDIIINPHAV 992



 Score =  181 bits (458), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 95/236 (40%), Positives = 142/236 (60%), Gaps = 10/236 (4%)

Query: 1142 QKGVI--GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEK 1199
            + G+I  G+ V  +D+   ++   PDI      L    +    ++     + S    +++
Sbjct: 870  EDGIISPGMRVSGDDVIIGKTVALPDI---DDDLDATGKKYPKRDASTFLRSSETGIVDQ 926

Query: 1200 VLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDII 1259
            V++S N++    +K+ +R  R P+IGDKF+SRHGQKG +G++  QEDMPF   G+ PDII
Sbjct: 927  VMLSLNNDGNKFVKIRMRSVRLPQIGDKFASRHGQKGTMGIMYRQEDMPFTAEGLTPDII 986

Query: 1260 MNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQE---ELIRHGYNYQG 1316
            +NPH  PSRMT+G LIE L GK    +G   + T F  T  V+VQ+    L  +GY+ +G
Sbjct: 987  INPHAVPSRMTIGHLIECLQGKLSANKGEIGDATPFNDT--VNVQKISGLLCEYGYHLRG 1044

Query: 1317 KDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
             ++ Y+G TG+ L   I+ GP YYQ+LKHMV DKIH+R+RGP  ++ RQP   R +
Sbjct: 1045 NEVMYNGHTGKKLTTQIFFGPTYYQRLKHMVDDKIHSRARGPIQMMNRQPMEGRAR 1100



 Score =  109 bits (273), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 66/171 (38%), Positives = 98/171 (57%), Gaps = 14/171 (8%)

Query: 174 ADKIIPKIKAAQFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYI 232
           A K I K      D+   ++  TIT  L  ++ TGNW   ++    R GV+QVL+RL+Y 
Sbjct: 440 AQKYINKNDDFALDVC--VKTSTITRGLAYSLATGNWGDQKKAHQSRAGVSQVLNRLTYT 497

Query: 233 SGLGMMTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTEN 292
           + L  + R NS   +  K++ PR L  +QWGM+CP++TPEG+A GLVKNLALM +I+  +
Sbjct: 498 ATLSHLRRANSPIGREGKLAKPRQLHNTQWGMVCPAETPEGQAVGLVKNLALMAYISVGS 557

Query: 293 DEKNMLKIMYNIGIEHIAMFNGEELSSPGVY---LVFVNGILAGITCHHKE 340
             + +L+ +     E  +M N EE+S   +     +FVNG   GI   H+E
Sbjct: 558 LPEPILEFL-----EEWSMENLEEVSPSAIADATKIFVNGAWVGI---HRE 600



 Score =  102 bits (254), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 56/135 (41%), Positives = 76/135 (56%), Gaps = 18/135 (13%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGV----TTHLEIAPFTLLGVCAGIELLQ 747
           + D +  G +E +D  E   S IA+    +R GV     TH EI P  +LGVCA I    
Sbjct: 675 WSDLVGGGVVELIDSMEEETSMIAMMPEDLRSGVYCDTHTHCEIHPAMILGVCASI---- 730

Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
                     +P+P HNQ+PRNTYQ AMGKQAMG    N   R+DTL + L Y Q+P+V 
Sbjct: 731 ----------IPFPDHNQSPRNTYQSAMGKQAMGVYTTNFHVRMDTLAHVLYYPQKPLVT 780

Query: 808 SKTIRITNFHKLPAG 822
           ++++    F++LPAG
Sbjct: 781 TRSMEYLRFNELPAG 795



 Score = 58.2 bits (139), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 3/88 (3%)

Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
           AR+ L    + H+ V       KA ++  M+ R++LA      LDDRD+ GNKRL+LAG 
Sbjct: 352 AREILQKELLPHVGVSEHCETKKAFFIGYMVHRLLLAALGRRELDDRDHIGNKRLDLAGP 411

Query: 516 LLSLMFEDVFKRFNSELKETNLSGVVNL 543
           LL+ +F  +F+     LKE  ++  + +
Sbjct: 412 LLAFLFRALFRNL---LKEKMITSCIQM 436



 Score = 48.5 bits (114), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 40/63 (63%), Gaps = 14/63 (22%)

Query: 358 PHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLV---------IGRMPIMLQSSKCVLRN 408
           P+E RLR+LTY++P+ VDI     ++ V R D V         +G++P+ML+SS C+L N
Sbjct: 124 PNEARLRNLTYASPLYVDI-----TKVVTRDDSVNEKVYEKVFVGKVPVMLRSSYCMLSN 178

Query: 409 KTE 411
            T+
Sbjct: 179 MTD 181


>gi|52699870|gb|AAU86996.1| DNA-dependent RNA polymerase II second largest subunit [Sarcogyne
            regularis var. regularis]
          Length = 702

 Score =  212 bits (540), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 106/265 (40%), Positives = 166/265 (62%), Gaps = 7/265 (2%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMG QAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 352  IIPFPDHNQSPRNTYQSAMGXQAMGVFLTNYDQRMDTMANILYYPQKPLATTRSMEFLKF 411

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR+     K+      ++ 
Sbjct: 412  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSVVEQF 471

Query: 1034 LGPLLEADTRKPVY-RHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPE--- 1089
              P + +DT K  +  +  LD DGIVAPG ++    +++ K+ P I+  A  +       
Sbjct: 472  EKP-MRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAP-IAPDAEELGQRTKLH 529

Query: 1090 -YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
              ++V    + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHGQKG IG+
Sbjct: 530  VKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGI 589

Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
               QEDMPF + G+ PD+I+NPH +
Sbjct: 590  TYRQEDMPFTKEGVVPDLIINPHAI 614



 Score =  158 bits (399), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 86/240 (35%), Positives = 133/240 (55%), Gaps = 13/240 (5%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESG-ICPDIIMNPHGL 1173
            ++ Q  +P   D    +HG        G++  G+ V  ED+   ++  I PD       L
Sbjct: 467  VVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDA----EEL 522

Query: 1174 KGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
                ++   ++V    + +    +++VL+++N+E    +K+ +R T+ P+IGDKF+SRHG
Sbjct: 523  GQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHG 582

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGT 1293
            QKG IG+   QEDMPF + G+ PD+I+NPH  PSRMT+  LIE    K   + G   + T
Sbjct: 583  QKGTIGITYRQEDMPFTKEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDAT 642

Query: 1294 AFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHA 1353
             F    +  V + L  HGY  +G ++ Y+G TG  L A ++ GP YYQ+L+HMV  KI A
Sbjct: 643  PFTEVTVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDXKIXA 702



 Score =  114 bits (285), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 90/151 (59%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  TITN L  ++ TGNW   ++    + GV+QVL+R ++ S L  + R N+
Sbjct: 31  EFNLTLGVKSTTITNGLKYSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNT 90

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT     + ++  M  
Sbjct: 91  PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSQPIVDFMIQ 150

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
             +E +  +  E   SP    VFVNG+  G+
Sbjct: 151 RNMEVLEEY--EPQRSPNATKVFVNGVWVGV 179



 Score = 88.2 bits (217), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/100 (42%), Positives = 57/100 (57%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMG QAMG    N
Sbjct: 336 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGXQAMGVFLTN 381

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 382 YDQRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 421


>gi|119644368|gb|ABL85620.1| RNA polymerase II second largest subunit [Lopezaria versicolor]
          Length = 660

 Score =  212 bits (540), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 115/290 (39%), Positives = 172/290 (59%), Gaps = 11/290 (3%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 370  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDVRMDTMANILYYPQKPLATTRSMEFLKF 429

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR      K+      +  
Sbjct: 430  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQEKRVGMSVVESF 489

Query: 1034 LGPLLEADTRKPVY-RHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKE 1092
              P + +DT K  +  +  LD DGIVAPG ++    +++ K+ P IS  A  +   +  +
Sbjct: 490  EKP-MRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAP-ISPDAEELG--QRTK 545

Query: 1093 VPVSYKGSVP------SYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVI 1146
            + +    S P        +++VL+S+NS+    +K+ +R T+ P+IGDKF+SRHGQKG I
Sbjct: 546  LHIKRDTSTPLRSTENGIVDQVLLSTNSDGLRSVKVRMRTTKVPQIGDKFASRHGQKGTI 605

Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSY 1196
            G+   QEDMPF   G+ PD+I+NPH +     I    E  +S   S+  Y
Sbjct: 606  GITYRQEDMPFTSQGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGY 655



 Score =  116 bits (290), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 93/151 (61%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  T+TN L  ++ TGNW  ++  M  + GV+QVL+R ++ S L  + R N+
Sbjct: 46  EFNLTLAVKSTTLTNGLKYSLATGNWGDQKKAMSSKAGVSQVLNRYTFASTLSHLRRTNT 105

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT     + ++  M  
Sbjct: 106 PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQ 165

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
             +E +  +  E L++P    +FVNG+  G+
Sbjct: 166 RNMEVLEEY--EPLNNPNATKIFVNGVWVGV 194



 Score =  105 bits (261), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 47/97 (48%), Positives = 66/97 (68%)

Query: 1197 LEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICP 1256
            +++VL+S+NS+    +K+ +R T+ P+IGDKF+SRHGQKG IG+   QEDMPF   G+ P
Sbjct: 564  VDQVLLSTNSDGLRSVKVRMRTTKVPQIGDKFASRHGQKGTIGITYRQEDMPFTSQGVVP 623

Query: 1257 DIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGT 1293
            D+I+NPH  PSRMT+  LIE    K   + G   + T
Sbjct: 624  DLIINPHAIPSRMTIAHLIECQLSKVSSLRGYEGDAT 660



 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 354 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 399

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 400 YDVRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 439


>gi|56694358|gb|AAW22919.1| RNA polymerase II second largest subunit [Metasequoia
            glyptostroboides]
          Length = 533

 Score =  212 bits (540), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 107/261 (40%), Positives = 160/261 (61%), Gaps = 1/261 (0%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 186  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHF 245

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L +R+ +   K+      +  
Sbjct: 246  RQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKRAGTLVKEEF 305

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAISMATPEYKE 1092
              P  E         +  LD DG+  PG ++    V++ K+ P     SA  ++    ++
Sbjct: 306  GRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDDSAGQVSKYTKRD 365

Query: 1093 VPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQ 1152
               S + S    +++VL+++N +    +K+ +R  R P+IGDKFSSRHGQKG +G+   Q
Sbjct: 366  QSTSLRHSESGMVDQVLLTTNQDGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQ 425

Query: 1153 EDMPFNESGICPDIIMNPHGL 1173
            EDMP+   GI PDII+NPH +
Sbjct: 426  EDMPWTVEGITPDIIVNPHAI 446



 Score =  161 bits (408), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 76/170 (44%), Positives = 107/170 (62%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++   S + S    +++VL+++N +    +K+ +R  R P+IGDKFSSRHGQKG +G+  
Sbjct: 364  RDQSTSLRHSESGMVDQVLLTTNQDGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTY 423

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMP+   GI PDII+NPH  PSRMT+G+LIE + GK     G   + T F    +  
Sbjct: 424  TQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDS 483

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIH 1352
            + + L + GY  +G +  Y+G TG  L A I+ GP YYQ+LKHMV DKIH
Sbjct: 484  ISKALHKCGYQMRGFETMYNGHTGRKLSAMIFLGPTYYQRLKHMVDDKIH 533



 Score =  100 bits (250), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 61/169 (36%), Positives = 87/169 (51%), Gaps = 37/169 (21%)

Query: 677 RPTFLNMHQFLGFKRFD-------------DFLYEGKIEYLDVNEGNDSHIAVSESGIRP 723
           RP F+  +Q L  ++ D             + + +G IEY+D  E   + I+++ + +  
Sbjct: 97  RPLFVVDNQRLKIRKVDINNLQASREDGWHELVTQGCIEYVDTEEEETTMISMTINDLVN 156

Query: 724 GVT----------THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQC 773
             T          TH EI P  +LGVCA I              +P+P HNQ+PRNTYQ 
Sbjct: 157 ARTNPEDAYSHTYTHCEIHPSLILGVCASI--------------IPFPDHNQSPRNTYQS 202

Query: 774 AMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAG 822
           AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F +LPAG
Sbjct: 203 AMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG 251


>gi|46277281|gb|AAS86831.1| RNA polymerase II second largest subunit, partial [Arceuthobium
            campylopodum]
          Length = 584

 Score =  212 bits (540), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 111/271 (40%), Positives = 168/271 (61%), Gaps = 21/271 (7%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y Q+P+V ++ +   +F
Sbjct: 246  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 305

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAG NA +A+  YSGY+ ED++IMN++S+DRGF R L +R+ +           ++ 
Sbjct: 306  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR---------DEEKK 356

Query: 1034 LGPLLEADTRKPV------YRHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
            +G L++ D  +P        RH +   LD DG+  PG ++    V++ K+ P I+     
Sbjct: 357  MGTLIKEDFGRPNRTDTMGMRHGSYDKLDDDGLAPPGTKVTGENVIIGKTSP-IAPDESQ 415

Query: 1085 MATPEY--KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQ 1142
              +  Y  ++   S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQ
Sbjct: 416  EQSFRYTKRDHSTSLRHSENGVVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 475

Query: 1143 KGVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
            KG IG+   QEDMP+   GI PDII+NPH +
Sbjct: 476  KGTIGMTYTQEDMPWTVEGITPDIIVNPHAI 506



 Score =  140 bits (354), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 67/157 (42%), Positives = 97/157 (61%)

Query: 1187 VSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQED 1246
             S + S    +++VL+++N++    +K+ +R  R P+IGDKFSSRHGQKG IG+   QED
Sbjct: 428  TSLRHSENGVVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTIGMTYTQED 487

Query: 1247 MPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEE 1306
            MP+   GI PDII+NPH  PSRMT+ +LIE + GK     G   + T F    + ++ + 
Sbjct: 488  MPWTVEGITPDIIVNPHAIPSRMTIAQLIECIMGKVAAHMGKEGDATPFTDVTVDNISQA 547

Query: 1307 LIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKL 1343
            L + GY   G +  Y+G TG  L + I+ GP YYQ+L
Sbjct: 548  LHKCGYQMHGFETMYNGHTGRKLTSMIFIGPTYYQRL 584



 Score =  101 bits (251), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 56/141 (39%), Positives = 78/141 (55%), Gaps = 24/141 (17%)

Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPG----------VTTHLEIAPFTLLGVCA 741
           + D + +G IEY+D  E   + I+++ + +  G            TH EI P  +LGVCA
Sbjct: 185 WHDLVAKGFIEYIDTEEEETTMISMTINDLVNGRLNLDDAYSKTYTHCEIHPSLILGVCA 244

Query: 742 GIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYA 801
            I              +P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DTL Y L Y 
Sbjct: 245 SI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYP 290

Query: 802 QRPMVESKTIRITNFHKLPAG 822
           Q+P+V ++ +   +F +LPAG
Sbjct: 291 QKPLVTTRAMEHLHFRQLPAG 311



 Score = 92.0 bits (227), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/113 (45%), Positives = 68/113 (60%), Gaps = 8/113 (7%)

Query: 225 VLSRLSYISGLGMMTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLAL 284
           VL+RL+Y S L  + R+NS   +  K+  PR L  SQWGM+ P++TPEG+ACGLVKNLAL
Sbjct: 1   VLNRLTYASTLSHLRRLNSPIGREGKLPKPRQLHNSQWGMMXPAETPEGQACGLVKNLAL 60

Query: 285 MTHITTENDEKNMLKIMYNIGIEHIAMFNGEELSS---PGVYLVFVNGILAGI 334
           M +IT  +    +L+ +   G E     N EE+S    P    +FVNG   GI
Sbjct: 61  MVYITVGSAAYPILEFLEEWGTE-----NFEEISPAVIPQSTKIFVNGCWVGI 108


>gi|258562142|gb|ACV81793.1| RNA polymerase II second largest subunit [Calocera viscosa]
          Length = 660

 Score =  212 bits (540), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 108/263 (41%), Positives = 159/263 (60%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DT+   L Y Q+P+  ++++    F
Sbjct: 313  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFQVRMDTMANILYYPQKPLATTRSMEYLKF 372

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K       +  
Sbjct: 373  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYTDMEKTTGIVPVEEF 432

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  L+ DG+VAPG  I    +++ K+ P    S        T   
Sbjct: 433  EKPHRDTTVRMKHGTYDKLEADGLVAPGIGINGEDIIIGKTAPLPPDSEELGQRTRTHTR 492

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+S+N      +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 493  RDVSTPLKSTENGIVDQVLISTNESGVKFVKVRIRSTRVPQIGDKFASRHGQKGTIGMTY 552

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF  +GI PDII+NPH +
Sbjct: 553  RQEDMPFAANGITPDIIINPHAI 575



 Score =  163 bits (412), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 78/168 (46%), Positives = 105/168 (62%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+S+N      +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 493  RDVSTPLKSTENGIVDQVLISTNESGVKFVKVRIRSTRVPQIGDKFASRHGQKGTIGMTY 552

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF  +GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 553  RQEDMPFAANGITPDIIINPHAIPSRMTIGHLVECLLSKLATLIGNEGDATPFTDLTVES 612

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDK 1350
            V   L   GY  +G ++ Y G TG  L+A +Y GP YYQ+LKHMV DK
Sbjct: 613  VSSLLRGKGYQQRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMVDDK 660



 Score =  112 bits (280), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 58/151 (38%), Positives = 92/151 (60%), Gaps = 4/151 (2%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F+I   ++  TITN L  ++ TGNW   ++F   + GV+QVL+R ++ S L  + R N+
Sbjct: 7   EFNINAAVKPATITNGLKYSLATGNWGDQKKFMQAKAGVSQVLNRYTFASTLSHLRRTNT 66

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WGM+CP++TPEG+ACGLVKNLALM  I+  +  + +++ +  
Sbjct: 67  PIGRDGKIARPRQLHNTHWGMVCPAETPEGQACGLVKNLALMACISVGSLSQPVVEFLEE 126

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            G+E +     E L +     VFVNG+  GI
Sbjct: 127 WGLEPLGERTDEGLMATK---VFVNGVWMGI 154



 Score = 87.4 bits (215), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 59/100 (59%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           +H EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 297 SHCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYLTN 342

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
            Q R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 343 FQVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAI 382


>gi|312985692|gb|ADR31307.1| RNA polymerase II [Gibberella zeae]
          Length = 612

 Score =  212 bits (540), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 101/263 (38%), Positives = 162/263 (61%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 279  IIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSMEFLKF 338

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L +R+     K+      +  
Sbjct: 339  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYSDQEKKVGLNYTEIF 398

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  LD+DGIVAPG ++    +++ K+ P    +        T + 
Sbjct: 399  EKPFQQTTLRMKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAPIDQENQDLGTRTQTHQR 458

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            +++    + +    +++V+++ N+++   +K+ +R T+ P+IGDKF+SRHGQKG IG+  
Sbjct: 459  RDISTPLRSTENGIVDQVILTVNADNVKYVKVRVRTTKIPQIGDKFASRHGQKGTIGVTY 518

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF+  G+ PDII+NPH +
Sbjct: 519  RQEDMPFSREGLTPDIIINPHAI 541



 Score =  134 bits (337), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 61/140 (43%), Positives = 92/140 (65%)

Query: 1197 LEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICP 1256
            +++V+++ N+++   +K+ +R T+ P+IGDKF+SRHGQKG IG+   QEDMPF+  G+ P
Sbjct: 473  VDQVILTVNADNVKYVKVRVRTTKIPQIGDKFASRHGQKGTIGVTYRQEDMPFSREGLTP 532

Query: 1257 DIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQG 1316
            DII+NPH  PSRMT+  LIE L  K   +EG   + T F    +  V + L +HGY  +G
Sbjct: 533  DIIINPHAIPSRMTIAHLIECLLSKVSTLEGMEGDATPFTDVTVDSVSDILRKHGYQSRG 592

Query: 1317 KDIFYSGITGEALEAYIYSG 1336
             ++ Y+G TG  L A ++ G
Sbjct: 593  FEVMYNGHTGRKLRAQVFFG 612



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 263 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGFFLTN 308

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 309 YSRRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 348



 Score = 74.7 bits (182), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 57/93 (61%), Gaps = 2/93 (2%)

Query: 242 NSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIM 301
           N+   +  K++ PR L  + WG++CP++TPEG+ACGLVKNL+LM +++  +  + ++  M
Sbjct: 2   NTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSPGEPLIDFM 61

Query: 302 YNIGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
            + G+E +  +  E    P    VFVNG   G+
Sbjct: 62  VSRGMEVVEEY--EPTRYPHATKVFVNGSWVGV 92


>gi|52699829|gb|AAU86976.1| DNA-dependent RNA polymerase II second largest subunit [Lempholemma
            polyanthes]
          Length = 714

 Score =  212 bits (540), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 103/263 (39%), Positives = 160/263 (60%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N   R+DT+   L Y Q+P+  ++++    F
Sbjct: 364  IIPFPDHNQSPRNTYQSAMGKQAMGIFLTNYIQRMDTMSNILYYPQKPLATTRSMEFLKF 423

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR+     K+      +  
Sbjct: 424  RELPAGQNAIVAIAVYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKKLGMSQMESF 483

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAISMATP--EY 1090
              P+ +   R     +  +D+DGI+APG ++    +++ K+ P       +   T     
Sbjct: 484  ERPMRDDTLRIKRGTYDKIDEDGIIAPGVRVIGDDIIIGKTAPLAPDAEELGQRTKGQTK 543

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    + +    +++VLV+ N++    +K+ +R T+ P+IGDKF+SRHGQKG IG+  
Sbjct: 544  RDVSTPLRSTEQGIVDRVLVTVNADGQRFVKVRMRTTKVPQIGDKFASRHGQKGTIGITY 603

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF   GI PD+I+NPH +
Sbjct: 604  RQEDMPFTREGIVPDLIINPHAI 626



 Score =  156 bits (394), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 73/171 (42%), Positives = 106/171 (61%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    + +    +++VLV+ N++    +K+ +R T+ P+IGDKF+SRHGQKG IG+  
Sbjct: 544  RDVSTPLRSTEQGIVDRVLVTVNADGQRFVKVRMRTTKVPQIGDKFASRHGQKGTIGITY 603

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF   GI PD+I+NPH  PSRMT+  LIE    K   ++G   + T F    +  
Sbjct: 604  RQEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQLSKVAALQGFEGDATPFTDITVDS 663

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHA 1353
            V   L  HGY  +G ++ Y+G TG+ L A ++ GP YYQ+L+HMV  KI A
Sbjct: 664  VSRLLREHGYQSRGFEVMYNGHTGKKLVAQVFLGPTYYQRLRHMVDXKIXA 714



 Score =  115 bits (288), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 58/155 (37%), Positives = 95/155 (61%), Gaps = 5/155 (3%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++Q T+TN L  ++ TGNW   ++    + GV+QVL+R ++ S L  + R N+
Sbjct: 43  EFNLNLGIKQATLTNGLKYSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNT 102

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT  +    +++ M  
Sbjct: 103 PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGSPSPPIIEFMIQ 162

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGITCHH 338
             ++ +  F+    +SP    VFVNG+  GI  HH
Sbjct: 163 RNMDMLEEFDPR--NSPTATKVFVNGVWVGI--HH 193



 Score = 88.6 bits (218), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 348 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGIFLTN 393

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 394 YIQRMDTMSNILYYPQKPLATTRSMEFLKFRELPAGQNAI 433


>gi|55583682|gb|AAV53360.1| RNA polymerase II second largest subunit [Dacryopinax spathularia]
          Length = 534

 Score =  212 bits (540), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 108/263 (41%), Positives = 159/263 (60%), Gaps = 3/263 (1%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG    N Q R+DT+   L Y Q+P+  ++++    F
Sbjct: 204  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFQVRMDTMANILYYPQKPLATTRSMEYLKF 263

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A++ YSGY+ ED++IMN++S+DRG  R + YR+   + K       +  
Sbjct: 264  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYTDMEKTTGIVPVEEF 323

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
              P  +   R     +  L+ DG+VAPG  I    +++ K+ P    S        T   
Sbjct: 324  EKPHRDTTVRMKHGTYDKLEADGLVAPGIGINGEDIIIGKTAPLPPDSEELGQRTRTHTR 383

Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
            ++V    K +    +++VL+S+N      +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 384  RDVSTPLKSTENGIVDQVLISTNESGVKFVKVRIRSTRIPQIGDKFASRHGQKGTIGMTY 443

Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
             QEDMPF  +GI PDII+NPH +
Sbjct: 444  RQEDMPFAANGITPDIIINPHAI 466



 Score =  133 bits (335), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 65/151 (43%), Positives = 91/151 (60%)

Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
            ++V    K +    +++VL+S+N      +K+ +R TR P+IGDKF+SRHGQKG IG+  
Sbjct: 384  RDVSTPLKSTENGIVDQVLISTNESGVKFVKVRIRSTRIPQIGDKFASRHGQKGTIGMTY 443

Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
             QEDMPF  +GI PDII+NPH  PSRMT+G L+E L  K   + GN  + T F    +  
Sbjct: 444  RQEDMPFAANGITPDIIINPHAIPSRMTIGHLVECLLSKLATLIGNEGDATPFTDLTVES 503

Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYI 1333
            V   L   GY  +G ++ Y G TG  L+A +
Sbjct: 504  VSALLRGKGYQQRGLEVMYHGHTGRKLQAQV 534



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/100 (44%), Positives = 59/100 (59%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG    N
Sbjct: 188 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGIYLTN 233

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
            Q R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 234 FQVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAI 273


>gi|52699855|gb|AAU86989.1| DNA-dependent RNA polymerase II second largest subunit [Placopsis
            perrugosa]
          Length = 693

 Score =  212 bits (540), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 107/266 (40%), Positives = 163/266 (61%), Gaps = 9/266 (3%)

Query: 914  LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
            ++P+P HNQ+PRNTYQ AMGKQAMG        R+DT+   L Y Q+P+  ++++    F
Sbjct: 354  IIPFPDHNQSPRNTYQSAMGKQAMGXXXXXXDERMDTMANILYYPQKPLATTRSMEFLKF 413

Query: 974  HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
             +LPAGQNA +A+  YSGY+ ED++IMN++S+DRG  R L YR      K+      ++ 
Sbjct: 414  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYVDQEKRIGLSVVEQF 473

Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKEV 1093
              P+     R     +  LD DGIVAPG ++    +++ K+ P I+ +A  +   +  ++
Sbjct: 474  EKPMRSDTLRLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAP-IAPNAEELG--QRTKL 530

Query: 1094 PVSYKGSVP------SYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
             +    S P        ++KVL+++N+E    +K+ +R T+ P+IGDKF+SRHGQKG IG
Sbjct: 531  HIKRDTSTPLRSTENGIVDKVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIG 590

Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
            +   QEDMPF+  GI PD+I+NPH +
Sbjct: 591  ITYLQEDMPFSSEGIVPDLIINPHAI 616



 Score =  139 bits (350), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 79/229 (34%), Positives = 122/229 (53%), Gaps = 13/229 (5%)

Query: 1123 LLRQTRRPEIGDKFSSRHG------QKGVI--GLIVEQEDMPFNESG-ICPDIIMNPHGL 1173
            ++ Q  +P   D    +HG        G++  G+ V  ED+   ++  I P    N   L
Sbjct: 469  VVEQFEKPMRSDTLRLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAP----NAEEL 524

Query: 1174 KGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
                ++   ++     + +    ++KVL+++N+E    +K+ +R T+ P+IGDKF+SRHG
Sbjct: 525  GQRTKLHIKRDTSTPLRSTENGIVDKVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHG 584

Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGT 1293
            QKG IG+   QEDMPF+  GI PD+I+NPH  PSRMT+  LIE    K   + G   + T
Sbjct: 585  QKGTIGITYLQEDMPFSSEGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDAT 644

Query: 1294 AFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQK 1342
             F    +  V   L  HGY  +G ++ Y+G TG  L A ++ G  YYQ+
Sbjct: 645  PFTDVTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGXTYYQR 693



 Score =  114 bits (284), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 90/151 (59%), Gaps = 3/151 (1%)

Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
           +F++   ++  T+TN L  ++ TGNW   ++    + GV+QVL+R ++ S L  + R N+
Sbjct: 31  EFNLTLGVKSTTLTNGLKYSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNT 90

Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
              +  K++ PR L  + WG++CP++TPEG+ACGLVKNLALM +IT     + ++  M  
Sbjct: 91  PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQ 150

Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
             +E +  +  E   SP    VFVNG+  G+
Sbjct: 151 RNMEVLEEY--EPTRSPNATKVFVNGVWVGV 179



 Score = 88.6 bits (218), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/100 (42%), Positives = 57/100 (57%), Gaps = 14/100 (14%)

Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
           TH EI P  +LG+CA I              +P+P HNQ+PRNTYQ AMGKQAMG     
Sbjct: 338 THCEIHPSMILGICASI--------------IPFPDHNQSPRNTYQSAMGKQAMGXXXXX 383

Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
              R+DT+   L Y Q+P+  ++++    F +LPAG+  I
Sbjct: 384 XDERMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 423


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.321    0.137    0.411 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,957,862,471
Number of Sequences: 23463169
Number of extensions: 954565473
Number of successful extensions: 1960870
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 15404
Number of HSP's successfully gapped in prelim test: 782
Number of HSP's that attempted gapping in prelim test: 1866709
Number of HSP's gapped (non-prelim): 71630
length of query: 1384
length of database: 8,064,228,071
effective HSP length: 155
effective length of query: 1229
effective length of database: 8,722,404,172
effective search space: 10719834727388
effective search space used: 10719834727388
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 84 (37.0 bits)