BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4067
(1384 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P59470|RPC2_MOUSE DNA-directed RNA polymerase III subunit RPC2 OS=Mus musculus
GN=Polr3b PE=2 SV=2
Length = 1133
Score = 428 bits (1100), Expect = e-118, Method: Compositional matrix adjust.
Identities = 193/265 (72%), Positives = 232/265 (87%), Gaps = 4/265 (1%)
Query: 913 GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
GL+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMY L Y Q+PMV++KTI + +
Sbjct: 670 GLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELID 729
Query: 973 FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
F KLPAGQNAT+AVMSYSGYDIEDAL++NKASLDRGFGRCLVY+N+KC LK+Y NQT D+
Sbjct: 730 FEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDK 789
Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT----P 1088
++GP+L+A TRKP++RH LD DGI +PGE++ +QVLVNKSMPT++ + + P
Sbjct: 790 VMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQP 849
Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
+YK+VP++YKG+ SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GL
Sbjct: 850 QYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGL 909
Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
IV QEDMPF +SGICPDIIMNPHG
Sbjct: 910 IVPQEDMPFCDSGICPDIIMNPHGF 934
Score = 320 bits (819), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 174/309 (56%), Positives = 214/309 (69%), Gaps = 26/309 (8%)
Query: 1079 SVSAISMATPEYKEVPVSYKGSVPSYLEKVLVSSNSE-----------DAFLIKMLLRQT 1127
+V+ +S + + ++ V K S+ + LV N++ D + ML T
Sbjct: 740 TVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLDAAT 799
Query: 1128 RRP----EIGDKFSSRHGQKGVI--GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITE 1181
R+P EI D G+ G VE + + N+S P + P + +
Sbjct: 800 RKPIWRHEILDA-------DGICSPGEKVENKQVLVNKS--MPTVTQIPLEGSNVPQQPQ 850
Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
YK+VP++YKG+ SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GLI
Sbjct: 851 YKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLI 910
Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
V QEDMPF +SGICPDIIMNPHG+PSRMTVGKLIELLAGKAG+++G + GTAFGG+K+
Sbjct: 911 VPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSKVK 970
Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
DV E+L+RHGYNY GKD SGITGE LEAYIY GPVYYQKLKHMV DK+HAR+RGPR V
Sbjct: 971 DVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAV 1030
Query: 1362 LTRQPTGRR 1370
LTRQPT R
Sbjct: 1031 LTRQPTEGR 1039
Score = 259 bits (662), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 125/209 (59%), Positives = 161/209 (77%), Gaps = 4/209 (1%)
Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVNHM 192
+D DY+ N ++ Q + ++ D+ + K+ IAD++IPK +AAQFD+V HM
Sbjct: 351 VDDRDYYGNKRLELAGQLLSLLFEDL----FKKFNSEMKKIADQVIPKQRAAQFDVVKHM 406
Query: 193 RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVS 252
RQD ITN + AI TGNW+++RFKM+RQGVTQVLSRLSYIS LGMMTRI+SQFEKTRKVS
Sbjct: 407 RQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVS 466
Query: 253 GPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMF 312
GPRSLQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT+ ++ ++K+ N+G+E + +
Sbjct: 467 GPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKLAGNLGVEDVNLL 526
Query: 313 NGEELSSPGVYLVFVNGILAGITCHHKEV 341
GEELS P V+LVF+NG + G+ HK++
Sbjct: 527 CGEELSYPNVFLVFLNGNILGVIRDHKKL 555
Score = 180 bits (456), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 107/217 (49%), Positives = 127/217 (58%), Gaps = 30/217 (13%)
Query: 621 FLFFLGGGGILPSIQRQTTCLLTLILFSLNGDGKRGARNSQQYCD-CPDGYSSG---CQP 676
FL FL G IL I+ + T L G S D C S G C+P
Sbjct: 537 FLVFLNGN-ILGVIRDHKKLVSTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRP 595
Query: 677 -------RPTFLNMHQ---FLGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVT 726
+P N H G++ F+DFL+E +EYLDVNE ND +IA+ E I T
Sbjct: 596 YIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKD-T 654
Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
THLEI PFTLLGVCAG L+PYPHHNQ+PRNTYQCAMGKQAMG IGYN
Sbjct: 655 THLEIEPFTLLGVCAG--------------LIPYPHHNQSPRNTYQCAMGKQAMGTIGYN 700
Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
Q+NRIDTLMY L Y Q+PMV++KTI + +F KLPAG+
Sbjct: 701 QRNRIDTLMYLLAYPQKPMVKTKTIELIDFEKLPAGQ 737
Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 63/111 (56%), Positives = 79/111 (71%), Gaps = 14/111 (12%)
Query: 303 NIGIEHIAMFNGEELSS---PGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPH 359
N+ I+ I N E+++S P YL ++N I G+ P++EESFN TR +PH
Sbjct: 52 NVEIKKIMKAN-EKVTSDADPMWYLKYLN-IYVGL---------PDVEESFNVTRPVSPH 100
Query: 360 ECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
ECRLRD+TYSAPITVDIEYTRGSQR++R+ L IGRMPIML+SS CVL KT
Sbjct: 101 ECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKT 151
Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 51/86 (59%), Positives = 70/86 (81%), Gaps = 1/86 (1%)
Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
KKT +++AR+ L+ST + H+PV F+ K +Y AVM+RR++LA D + +DDRDYYGNK
Sbjct: 302 KKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQGD-NKVDDRDYYGNK 360
Query: 509 RLELAGSLLSLMFEDVFKRFNSELKE 534
RLELAG LLSL+FED+FK+FNSE+K+
Sbjct: 361 RLELAGQLLSLLFEDLFKKFNSEMKK 386
Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/66 (63%), Positives = 56/66 (84%)
Query: 110 PEIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDI 169
P + +KW+L+ +FLK KGLVK HIDSF+YFINVEIKK+M+AN + SD DP++YLKYL+I
Sbjct: 21 PTVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMWYLKYLNI 80
Query: 170 HVGIAD 175
+VG+ D
Sbjct: 81 YVGLPD 86
>sp|Q9NW08|RPC2_HUMAN DNA-directed RNA polymerase III subunit RPC2 OS=Homo sapiens
GN=POLR3B PE=1 SV=2
Length = 1133
Score = 427 bits (1098), Expect = e-118, Method: Compositional matrix adjust.
Identities = 193/265 (72%), Positives = 231/265 (87%), Gaps = 4/265 (1%)
Query: 913 GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
GL+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMY L Y Q+PMV++KTI +
Sbjct: 670 GLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIE 729
Query: 973 FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
F KLPAGQNAT+AVMSYSGYDIEDAL++NKASLDRGFGRCLVY+N+KC LK+Y NQT D+
Sbjct: 730 FEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDK 789
Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT----P 1088
++GP+L+A TRKP++RH LD DGI +PGE++ +QVLVNKSMPT++ + + P
Sbjct: 790 VMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQP 849
Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
+YK+VP++YKG+ SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GL
Sbjct: 850 QYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGL 909
Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
IV QEDMPF +SGICPDIIMNPHG
Sbjct: 910 IVPQEDMPFCDSGICPDIIMNPHGF 934
Score = 320 bits (820), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 174/309 (56%), Positives = 214/309 (69%), Gaps = 26/309 (8%)
Query: 1079 SVSAISMATPEYKEVPVSYKGSVPSYLEKVLVSSNSE-----------DAFLIKMLLRQT 1127
+V+ +S + + ++ V K S+ + LV N++ D + ML T
Sbjct: 740 TVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLDAAT 799
Query: 1128 RRP----EIGDKFSSRHGQKGVI--GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITE 1181
R+P EI D G+ G VE + + N+S P + P + +
Sbjct: 800 RKPIWRHEILDA-------DGICSPGEKVENKQVLVNKS--MPTVTQIPLEGSNVPQQPQ 850
Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
YK+VP++YKG+ SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GLI
Sbjct: 851 YKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLI 910
Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
V QEDMPF +SGICPDIIMNPHG+PSRMTVGKLIELLAGKAG+++G + GTAFGG+K+
Sbjct: 911 VPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSKVK 970
Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
DV E+L+RHGYNY GKD SGITGE LEAYIY GPVYYQKLKHMV DK+HAR+RGPR V
Sbjct: 971 DVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAV 1030
Query: 1362 LTRQPTGRR 1370
LTRQPT R
Sbjct: 1031 LTRQPTEGR 1039
Score = 259 bits (662), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 125/209 (59%), Positives = 161/209 (77%), Gaps = 4/209 (1%)
Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVNHM 192
+D DY+ N ++ Q + ++ D+ + K+ IAD++IPK +AAQFD+V HM
Sbjct: 351 VDDRDYYGNKRLELAGQLLSLLFEDL----FKKFNSEMKKIADQVIPKQRAAQFDVVKHM 406
Query: 193 RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVS 252
RQD ITN + AI TGNW+++RFKM+RQGVTQVLSRLSYIS LGMMTRI+SQFEKTRKVS
Sbjct: 407 RQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVS 466
Query: 253 GPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMF 312
GPRSLQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT+ ++ ++K+ N+G+E + +
Sbjct: 467 GPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLL 526
Query: 313 NGEELSSPGVYLVFVNGILAGITCHHKEV 341
GEELS P V+LVF+NG + G+ HK++
Sbjct: 527 CGEELSYPNVFLVFLNGNILGVIRDHKKL 555
Score = 179 bits (453), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 107/217 (49%), Positives = 126/217 (58%), Gaps = 30/217 (13%)
Query: 621 FLFFLGGGGILPSIQRQTTCLLTLILFSLNGDGKRGARNSQQYCD-CPDGYSSG---CQP 676
FL FL G IL I+ + T L G S D C S G C+P
Sbjct: 537 FLVFLNGN-ILGVIRDHKKLVNTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRP 595
Query: 677 -------RPTFLNMHQ---FLGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVT 726
+P N H G++ F+DFL+E +EYLDVNE ND +IA+ E I T
Sbjct: 596 YIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKD-T 654
Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
THLEI PFTLLGVCAG L+PYPHHNQ+PRNTYQCAMGKQAMG IGYN
Sbjct: 655 THLEIEPFTLLGVCAG--------------LIPYPHHNQSPRNTYQCAMGKQAMGTIGYN 700
Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
Q+NRIDTLMY L Y Q+PMV++KTI + F KLPAG+
Sbjct: 701 QRNRIDTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQ 737
Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 63/111 (56%), Positives = 79/111 (71%), Gaps = 14/111 (12%)
Query: 303 NIGIEHIAMFNGEELSS---PGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPH 359
N+ I+ I N E+++S P YL ++N I G+ P++EESFN TR +PH
Sbjct: 52 NVEIKKIMKAN-EKVTSDADPMWYLKYLN-IYVGL---------PDVEESFNVTRPVSPH 100
Query: 360 ECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
ECRLRD+TYSAPITVDIEYTRGSQR++R+ L IGRMPIML+SS CVL KT
Sbjct: 101 ECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKT 151
Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 51/86 (59%), Positives = 70/86 (81%), Gaps = 1/86 (1%)
Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
KKT +++AR+ L+ST + H+PV F+ K +Y AVM+RR++LA D + +DDRDYYGNK
Sbjct: 302 KKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQGD-NKVDDRDYYGNK 360
Query: 509 RLELAGSLLSLMFEDVFKRFNSELKE 534
RLELAG LLSL+FED+FK+FNSE+K+
Sbjct: 361 RLELAGQLLSLLFEDLFKKFNSEMKK 386
Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/66 (63%), Positives = 56/66 (84%)
Query: 110 PEIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDI 169
P + +KW+L+ +FLK KGLVK HIDSF+YFINVEIKK+M+AN + SD DP++YLKYL+I
Sbjct: 21 PTVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMWYLKYLNI 80
Query: 170 HVGIAD 175
+VG+ D
Sbjct: 81 YVGLPD 86
>sp|P25167|RPC2_DROME DNA-directed RNA polymerase III subunit RPC2 OS=Drosophila
melanogaster GN=RpIII128 PE=2 SV=2
Length = 1137
Score = 412 bits (1059), Expect = e-114, Method: Compositional matrix adjust.
Identities = 189/265 (71%), Positives = 225/265 (84%), Gaps = 5/265 (1%)
Query: 913 GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
GLVPYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRID+LMYNLVY PMV+SKTI +TN
Sbjct: 677 GLVPYPHHNQSPRNTYQCAMGKQAMGMIGYNQKNRIDSLMYNLVYPHAPMVKSKTIELTN 736
Query: 973 FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
F KLPAGQNAT+AVMSYSGYDIEDALI+NKAS+DRG+GRCLVY+NSKC +K+Y NQT DR
Sbjct: 737 FDKLPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKRYANQTFDR 796
Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTIS----VSAISMATP 1088
I+GP+ +A T K +++H LD DGIVAPGEQ+ +Q+++NK MP ++ + S P
Sbjct: 797 IMGPMKDALTNKVIFKHDVLDTDGIVAPGEQVQNKQIMINKEMPAVTSMNPLQGQSAQVP 856
Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
Y VP+SYKG PSY+E+V+VS+N+E+ FLIK+LLRQTR PEIGDKFSSRHGQKGV GL
Sbjct: 857 -YTAVPISYKGPEPSYIERVMVSANAEEDFLIKILLRQTRIPEIGDKFSSRHGQKGVTGL 915
Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
IVEQEDMPFN+ GICPD+IMNPHG
Sbjct: 916 IVEQEDMPFNDFGICPDMIMNPHGF 940
Score = 318 bits (816), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 150/203 (73%), Positives = 172/203 (84%), Gaps = 2/203 (0%)
Query: 1168 MNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDK 1227
MNP L+G Y VP+SYKG PSY+E+V+VS+N+E+ FLIK+LLRQTR PEIGDK
Sbjct: 845 MNP--LQGQSAQVPYTAVPISYKGPEPSYIERVMVSANAEEDFLIKILLRQTRIPEIGDK 902
Query: 1228 FSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEG 1287
FSSRHGQKGV GLIVEQEDMPFN+ GICPD+IMNPHG+PSRMTVGK +ELL GKAGL+EG
Sbjct: 903 FSSRHGQKGVTGLIVEQEDMPFNDFGICPDMIMNPHGFPSRMTVGKTLELLGGKAGLLEG 962
Query: 1288 NYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMV 1347
+ GTAFGG+K+ D+Q EL RHG+NY GKD FYSGITG LEAYIYSGPVYYQKLKHMV
Sbjct: 963 KFHYGTAFGGSKVEDIQAELERHGFNYVGKDFFYSGITGTPLEAYIYSGPVYYQKLKHMV 1022
Query: 1348 QDKIHARSRGPRVVLTRQPTGRR 1370
QDK+HAR+RGP+ VLTRQPT R
Sbjct: 1023 QDKMHARARGPKAVLTRQPTQGR 1045
Score = 255 bits (651), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 129/216 (59%), Positives = 160/216 (74%), Gaps = 4/216 (1%)
Query: 128 LVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFD 187
L K D DY+ N K+L A + + + LF ++ IADK IPK+KAAQFD
Sbjct: 353 LDKTLFDDRDYYGN---KRLELAGSLLSMMFEDLFKRMNWELKT-IADKNIPKVKAAQFD 408
Query: 188 IVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEK 247
+V HMR IT L +AI +GNWTI+RFKMER GVTQVLSRLSYIS LGMMTR+NSQFEK
Sbjct: 409 VVKHMRAAQITAGLESAISSGNWTIKRFKMERAGVTQVLSRLSYISALGMMTRVNSQFEK 468
Query: 248 TRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIE 307
TRKVSGPRSLQ SQWGMLCPSDTPEGEACGLVKNLALMTHITTE +E+ ++ + +N G+E
Sbjct: 469 TRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVEERPVMIVAFNAGVE 528
Query: 308 HIAMFNGEELSSPGVYLVFVNGILAGITCHHKEVCK 343
I +G +++P V+LVF+NG + G+T +HK + +
Sbjct: 529 DIREVSGNPINNPNVFLVFINGNVLGLTLNHKHLVR 564
Score = 188 bits (477), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 93/136 (68%), Positives = 103/136 (75%), Gaps = 15/136 (11%)
Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
G ++FDDFL +G IEYLDVNE NDS IA +E I TTHLEI PFTLLGVCAG
Sbjct: 624 GIRKFDDFLLDGLIEYLDVNEENDSFIAWNEDQIEDR-TTHLEIEPFTLLGVCAG----- 677
Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
LVPYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRID+LMYNLVY PMV+
Sbjct: 678 ---------LVPYPHHNQSPRNTYQCAMGKQAMGMIGYNQKNRIDSLMYNLVYPHAPMVK 728
Query: 808 SKTIRITNFHKLPAGK 823
SKTI +TNF KLPAG+
Sbjct: 729 SKTIELTNFDKLPAGQ 744
Score = 118 bits (296), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/96 (59%), Positives = 75/96 (78%), Gaps = 1/96 (1%)
Query: 439 KLRQKRFQTYK-KTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPD 497
KL KRFQ+ KTP ++AR+ L +T +AH+PV N +MKA+Y+++M+RR++ A D
Sbjct: 297 KLVVKRFQSATTKTPSEEARELLLTTILAHVPVDNFNLQMKAIYVSMMVRRVMAAELDKT 356
Query: 498 MLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
+ DDRDYYGNKRLELAGSLLS+MFED+FKR N ELK
Sbjct: 357 LFDDRDYYGNKRLELAGSLLSMMFEDLFKRMNWELK 392
Score = 111 bits (277), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 49/75 (65%), Positives = 62/75 (82%)
Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQ 400
V KP+I++ FN T+ TTPHECRLRD TYSAPITVDIEYTRG+QR+ R++L+IGRMP+ML+
Sbjct: 90 VGKPDIDDGFNITKATTPHECRLRDTTYSAPITVDIEYTRGTQRIKRNNLLIGRMPLMLR 149
Query: 401 SSKCVLRNKTEYTSS 415
S C L K+E+ S
Sbjct: 150 CSNCALTGKSEFELS 164
Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/64 (62%), Positives = 52/64 (81%)
Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
+ +KWKLV +FL+ KGLVK HIDSF++FINV+IKK+++AN + S DPLFYLKYLD+ V
Sbjct: 31 LTEKWKLVPAFLQVKGLVKQHIDSFNHFINVDIKKIVKANELVTSGADPLFYLKYLDVRV 90
Query: 172 GIAD 175
G D
Sbjct: 91 GKPD 94
>sp|Q10233|RPC2_SCHPO DNA-directed RNA polymerase III subunit RPC2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpc2 PE=2 SV=1
Length = 1165
Score = 341 bits (874), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 153/267 (57%), Positives = 201/267 (75%), Gaps = 6/267 (2%)
Query: 913 GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
GL+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ RIDTL+Y +VY Q+PMV++KTI +
Sbjct: 699 GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLQRIDTLLYLMVYPQQPMVKTKTIELIG 758
Query: 973 FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
+ KLPAGQNAT+A+MSYSGYDIEDAL++NK+S+DRGFGRC V+ ++++YPN THDR
Sbjct: 759 YDKLPAGQNATVAIMSYSGYDIEDALVLNKSSIDRGFGRCQVFHKHSVIVRKYPNGTHDR 818
Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPT------ISVSAISMA 1086
I P + +T + V++H ++ DG+ G ++ Q+ VNK PT I++
Sbjct: 819 IGDPQRDPETGEVVWKHGVVEDDGLAGVGCRVQPGQIYVNKQTPTNALDNSITLGHTQTV 878
Query: 1087 TPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVI 1146
YK P++YK P Y++KV++++ D LIK+L+RQTRRPE+GDKFSSRHGQKGV
Sbjct: 879 ESGYKATPMTYKAPEPGYIDKVMLTTTDSDQTLIKVLMRQTRRPELGDKFSSRHGQKGVC 938
Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGL 1173
G+IV+QEDMPFN+ GICPDIIMNPHG
Sbjct: 939 GVIVQQEDMPFNDQGICPDIIMNPHGF 965
Score = 286 bits (731), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 128/189 (67%), Positives = 155/189 (82%)
Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
YK P++YK P Y++KV++++ D LIK+L+RQTRRPE+GDKFSSRHGQKGV G+I
Sbjct: 882 YKATPMTYKAPEPGYIDKVMLTTTDSDQTLIKVLMRQTRRPELGDKFSSRHGQKGVCGVI 941
Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
V+QEDMPFN+ GICPDIIMNPHG+PSRMTVGK+IELL+GK G++ G + GT FGGTK+
Sbjct: 942 VQQEDMPFNDQGICPDIIMNPHGFPSRMTVGKMIELLSGKVGVLRGTLEYGTCFGGTKVE 1001
Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
D L+ HGYNY GKD+ SGITGE LEAYI+ GP+YYQKLKHMV DK+HAR+RGPR V
Sbjct: 1002 DASRILVEHGYNYSGKDMLTSGITGETLEAYIFMGPIYYQKLKHMVMDKMHARARGPRAV 1061
Query: 1362 LTRQPTGRR 1370
LTRQPT R
Sbjct: 1062 LTRQPTEGR 1070
Score = 215 bits (548), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 116/213 (54%), Positives = 147/213 (69%), Gaps = 8/213 (3%)
Query: 127 GLVKP-HIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKI-KAA 184
+V P +D DY N ++ Q A ++ D LF D+ + I DK++ K +
Sbjct: 370 AMVDPLQVDDRDYVGNKRLELAGQLLALLFED---LFKKFNSDLKLNI-DKVLKKPHRTQ 425
Query: 185 QFDIVNHM--RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRIN 242
+FD N + D IT + A+ TGNW+++RFKMER GVT VLSRLSYIS LGMMTRI
Sbjct: 426 EFDAYNQLTVHSDHITQGMVRALSTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRIT 485
Query: 243 SQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMY 302
SQFEKTRKVSGPRSLQ SQ+GMLC SDTPEGEACGLVKNLALMTHITT+ +E+ ++K+ Y
Sbjct: 486 SQFEKTRKVSGPRSLQASQFGMLCTSDTPEGEACGLVKNLALMTHITTDEEEEPIIKLAY 545
Query: 303 NIGIEHIAMFNGEELSSPGVYLVFVNGILAGIT 335
GIE I + +G EL S G YLV++NG + GI+
Sbjct: 546 AFGIEDIHVISGRELHSHGTYLVYLNGAILGIS 578
Score = 160 bits (406), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 78/132 (59%), Positives = 95/132 (71%), Gaps = 15/132 (11%)
Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKR 751
F+DFL +G +EY+DVNE NDS I+V E I P TTHLEI PFT+LG AG
Sbjct: 650 FEDFLKQGLVEYVDVNEENDSLISVYERDITPD-TTHLEIEPFTILGAVAG--------- 699
Query: 752 FHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTI 811
L+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ RIDTL+Y +VY Q+PMV++KTI
Sbjct: 700 -----LIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLQRIDTLLYLMVYPQQPMVKTKTI 754
Query: 812 RITNFHKLPAGK 823
+ + KLPAG+
Sbjct: 755 ELIGYDKLPAGQ 766
Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 45/82 (54%), Positives = 66/82 (80%)
Query: 452 PVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLE 511
P ++A + L++ +AHI V N+ F+ KA+Y+ +M RR+++A+ DP +DDRDY GNKRLE
Sbjct: 330 PHEEALEVLAAVVLAHINVFNLEFRPKAVYIGIMARRVLMAMVDPLQVDDRDYVGNKRLE 389
Query: 512 LAGSLLSLMFEDVFKRFNSELK 533
LAG LL+L+FED+FK+FNS+LK
Sbjct: 390 LAGQLLALLFEDLFKKFNSDLK 411
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/69 (60%), Positives = 56/69 (81%), Gaps = 1/69 (1%)
Query: 105 KLKDS-PEIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFY 163
KL D P I DKW+L+ +FLK KGLVK H+DS++YF++V++KK++QAN + SDV+P FY
Sbjct: 39 KLADPVPTIEDKWQLLPAFLKVKGLVKQHLDSYNYFVDVDLKKIVQANEKVTSDVEPWFY 98
Query: 164 LKYLDIHVG 172
LKYLDI VG
Sbjct: 99 LKYLDIRVG 107
Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/55 (69%), Positives = 44/55 (80%)
Query: 357 TPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKTE 411
+PHECRLRDLTY A I VDIEYTRG Q V R ++ IGRMP+ML+S+KCVL K E
Sbjct: 122 SPHECRLRDLTYGANIYVDIEYTRGKQVVRRRNVPIGRMPVMLRSNKCVLSGKNE 176
>sp|P22276|RPC2_YEAST DNA-directed RNA polymerase III subunit RPC2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RET1 PE=1 SV=2
Length = 1149
Score = 332 bits (852), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 155/266 (58%), Positives = 205/266 (77%), Gaps = 7/266 (2%)
Query: 913 GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
GL+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ RIDTL+Y + Y Q+PMV++KTI + +
Sbjct: 686 GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMTYPQQPMVKTKTIELID 745
Query: 973 FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
+ KLPAGQNAT+AVMSYSGYDIEDAL++NK+S+DRGFGRC R + VLK+Y N T D
Sbjct: 746 YDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCETRRKTTTVLKRYANHTQD- 804
Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSA-----ISMAT 1087
I+G + + P+++H++L DG+ G ++ Q+ +NKS+PT S A +++ T
Sbjct: 805 IIGGMRVDENGDPIWQHQSLGPDGLGEVGMKVQSGQIYINKSVPTNSADAPNPNNVNVQT 864
Query: 1088 PEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
+Y+E PV Y+G PS++++V++S + D LIK+LLRQ RRPE+GDKFSSRHGQKGV G
Sbjct: 865 -QYREAPVIYRGPEPSHIDQVMMSVSDNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCG 923
Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
+IV+QEDMPFN+ GI PDIIMNPHG
Sbjct: 924 IIVKQEDMPFNDQGIVPDIIMNPHGF 949
Score = 283 bits (724), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 127/193 (65%), Positives = 161/193 (83%)
Query: 1180 TEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1239
T+Y+E PV Y+G PS++++V++S + D LIK+LLRQ RRPE+GDKFSSRHGQKGV G
Sbjct: 864 TQYREAPVIYRGPEPSHIDQVMMSVSDNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCG 923
Query: 1240 LIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTK 1299
+IV+QEDMPFN+ GI PDIIMNPHG+PSRMTVGK+IEL++GKAG++ G + GT FGG+K
Sbjct: 924 IIVKQEDMPFNDQGIVPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGTLEYGTCFGGSK 983
Query: 1300 LVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPR 1359
L D+ + L+ G+NY GKD+ YSGITGE L+AYI+ GP+YYQKLKHMV DK+HAR+RGPR
Sbjct: 984 LEDMSKILVDQGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPR 1043
Query: 1360 VVLTRQPTGRRWK 1372
VLTRQPT R +
Sbjct: 1044 AVLTRQPTEGRSR 1056
Score = 188 bits (477), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 105/204 (51%), Positives = 141/204 (69%), Gaps = 9/204 (4%)
Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPK-IKAAQFD--IV 189
ID DY N ++ Q + ++ D LF D + I DK++ K +A ++D +
Sbjct: 366 IDDRDYVGNKRLELAGQLISLLFED---LFKKFNNDFKLSI-DKVLKKPNRAMEYDALLS 421
Query: 190 NHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
++ + IT+ L AI TGNW+++RFKMER GVT VLSRLSYIS LGMMTRI+SQFEK+R
Sbjct: 422 INVHSNNITSGLNRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSR 481
Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHI 309
KVSGPR+LQ SQ+GMLC +DTPEGEACGLVKNLALMTHITT+++E+ + K+ Y +G+E I
Sbjct: 482 KVSGPRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEEEPIKKLCYVLGVEDI 541
Query: 310 AMFNGEELSSPGVYLVFVNGILAG 333
+ + L Y V++NG L G
Sbjct: 542 TLIDSASLHLN--YGVYLNGTLIG 563
Score = 162 bits (411), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 83/153 (54%), Positives = 104/153 (67%), Gaps = 16/153 (10%)
Query: 672 SGCQPRPTFLNMHQFL-GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLE 730
S Q R +++ + L G FDDFL G +EYLDVNE NDS+IA+ E I P +T HLE
Sbjct: 616 SDGQSRVKDIHLRKLLDGELDFDDFLKLGLVEYLDVNEENDSYIALYEKDIVPSMT-HLE 674
Query: 731 IAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNR 790
I PFT+LG AG L+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ R
Sbjct: 675 IEPFTILGAVAG--------------LIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKR 720
Query: 791 IDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
IDTL+Y + Y Q+PMV++KTI + ++ KLPAG+
Sbjct: 721 IDTLLYLMTYPQQPMVKTKTIELIDYDKLPAGQ 753
Score = 101 bits (252), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 49/113 (43%), Positives = 81/113 (71%), Gaps = 2/113 (1%)
Query: 421 TSSVTMHSQRTSPLLSCKKLRQKRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAM 480
+S + +++Q+ + K++ R Q K T + + + +++T IAH+ V + F+ KA+
Sbjct: 290 SSKLDIYTQQQALEYIGAKVKTMRRQ--KLTILQEGIEAIATTVIAHLTVEALDFREKAL 347
Query: 481 YLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
Y+A+M RR+V+A+ +P M+DDRDY GNKRLELAG L+SL+FED+FK+FN++ K
Sbjct: 348 YIAMMTRRVVMAMYNPKMIDDRDYVGNKRLELAGQLISLLFEDLFKKFNNDFK 400
Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 37/60 (61%), Positives = 50/60 (83%)
Query: 113 RDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
+DKW L+ +FLK KGLVK H+DSF+YF++ ++KK+++AN I SDVDP FYLKY+DI VG
Sbjct: 42 QDKWHLLPAFLKVKGLVKQHLDSFNYFVDTDLKKIIKANQLILSDVDPEFYLKYVDIRVG 101
Score = 84.3 bits (207), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 37/56 (66%), Positives = 45/56 (80%)
Query: 356 TTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKTE 411
T PHECRLRD+TYSAPI VDIEYTRG ++ D+ IGRMPIML+S+KC+L + E
Sbjct: 113 TPPHECRLRDMTYSAPIYVDIEYTRGRNIIMHKDVEIGRMPIMLRSNKCILYDADE 168
>sp|Q54IZ9|RPC2_DICDI DNA-directed RNA polymerase III subunit rpc2 OS=Dictyostelium
discoideum GN=polr3b PE=3 SV=1
Length = 1608
Score = 327 bits (838), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 159/267 (59%), Positives = 198/267 (74%), Gaps = 11/267 (4%)
Query: 913 GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
GL+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ RIDTL+Y LV+ QRP+ +++TI + N
Sbjct: 1150 GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLTRIDTLLYLLVHTQRPLCQTRTIDLLN 1209
Query: 973 FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
++KLPAG NAT+AVMSYSGYDIEDAL+MNKASLDRGFGRC+V + +K++ N T DR
Sbjct: 1210 WYKLPAGHNATVAVMSYSGYDIEDALVMNKASLDRGFGRCIVLKKQVTSIKKHGNDTSDR 1269
Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPE--- 1089
I P D R+P Y LD DGI PGE + Q+LVNK P ++ A PE
Sbjct: 1270 IFPP-TPNDLRQPKY--GLLDSDGIAKPGELAQKGQILVNKYSPLNTIDA--TPNPELIP 1324
Query: 1090 ---YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVI 1146
YK + YK P++++KVL++S ++ LIKML+R TRRPE+GDKFSSRHGQKGV
Sbjct: 1325 DSAYKSSYMGYKYDNPAFIDKVLLTSGDDEQLLIKMLMRSTRRPELGDKFSSRHGQKGVC 1384
Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGL 1173
G+IV+QEDMPF++ GICPDIIMNPHG
Sbjct: 1385 GIIVKQEDMPFSDLGICPDIIMNPHGF 1411
Score = 259 bits (663), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 126/249 (50%), Positives = 172/249 (69%), Gaps = 8/249 (3%)
Query: 1124 LRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYK 1183
LRQ + + ++ G+ G I+ + P N P+ + P + YK
Sbjct: 1278 LRQPKYGLLDSDGIAKPGELAQKGQILVNKYSPLNTIDATPNPELIPD--------SAYK 1329
Query: 1184 EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVE 1243
+ YK P++++KVL++S ++ LIKML+R TRRPE+GDKFSSRHGQKGV G+IV+
Sbjct: 1330 SSYMGYKYDNPAFIDKVLLTSGDDEQLLIKMLMRSTRRPELGDKFSSRHGQKGVCGIIVK 1389
Query: 1244 QEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDV 1303
QEDMPF++ GICPDIIMNPHG+PSRMT+GK+IELLAGKAG++ G + GT FGG ++ ++
Sbjct: 1390 QEDMPFSDLGICPDIIMNPHGFPSRMTIGKMIELLAGKAGVLSGKFGFGTCFGGDRVENI 1449
Query: 1304 QEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLT 1363
+ LI G++Y GKD SG+TGE L +I+ GP++YQKLKHMV DK+HAR+RGP V LT
Sbjct: 1450 SKVLISKGFSYGGKDYVTSGVTGEPLACFIFFGPIFYQKLKHMVMDKMHARARGPTVTLT 1509
Query: 1364 RQPTGRRWK 1372
RQPT R +
Sbjct: 1510 RQPTEGRAR 1518
Score = 167 bits (423), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 80/135 (59%), Positives = 98/135 (72%), Gaps = 15/135 (11%)
Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
G + FDDF+ EG IEYLDVNE NDS +A E+ I+P TTHLEI PFT+LG AG
Sbjct: 1097 GLRTFDDFIREGIIEYLDVNEENDSFLAWREAAIQPW-TTHLEIEPFTMLGCVAG----- 1150
Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
L+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ RIDTL+Y LV+ QRP+ +
Sbjct: 1151 ---------LIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLTRIDTLLYLLVHTQRPLCQ 1201
Query: 808 SKTIRITNFHKLPAG 822
++TI + N++KLPAG
Sbjct: 1202 TRTIDLLNWYKLPAG 1216
Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 80/148 (54%), Positives = 99/148 (66%), Gaps = 5/148 (3%)
Query: 130 KPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKI-KAAQFDI 188
K +D DY+ N I+ Q + ++ D + K+ D+ I K +A D+
Sbjct: 363 KSCLDDKDYYGNKRIELSGQLISLLFEDC----FKKFQSELKKSVDQAIAKANRAENLDL 418
Query: 189 VNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKT 248
+R DTITN T AI +G W ++RF+MER GV+QVLSRLSYIS +GMMTRI SQFEKT
Sbjct: 419 PKLIRTDTITNGFTHAISSGQWNLKRFRMERSGVSQVLSRLSYISCMGMMTRIQSQFEKT 478
Query: 249 RKVSGPRSLQGSQWGMLCPSDTPEGEAC 276
RKV+GPRSLQ SQWGMLCPSDTPEGEAC
Sbjct: 479 RKVAGPRSLQPSQWGMLCPSDTPEGEAC 506
Score = 107 bits (266), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 46/87 (52%), Positives = 67/87 (77%)
Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
KKT ++ARD L+ + H+PV F++K +YL++MIRR+++A D LDD+DYYGNK
Sbjct: 316 KKTKSEEARDILAGVVLNHVPVRRYNFRLKVIYLSLMIRRIIMASKDKSCLDDKDYYGNK 375
Query: 509 RLELAGSLLSLMFEDVFKRFNSELKET 535
R+EL+G L+SL+FED FK+F SELK++
Sbjct: 376 RIELSGQLISLLFEDCFKKFQSELKKS 402
Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 56/70 (80%), Gaps = 1/70 (1%)
Query: 104 SKLKDSPE-IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLF 162
SKL D + + +KWKLV +F+K +GLVK HIDSF++FINVE+KK+++AN + ++ DP +
Sbjct: 27 SKLTDDIKPVEEKWKLVPAFMKCRGLVKQHIDSFNFFINVEMKKIVKANERLTAENDPSY 86
Query: 163 YLKYLDIHVG 172
++++ DI+VG
Sbjct: 87 FVRFTDINVG 96
Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/56 (62%), Positives = 42/56 (75%)
Query: 355 QTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
Q TP CRLRD+TYSAPI V+IEYTR Q + + D+ IG +PIML+SS CVL KT
Sbjct: 109 QLTPQRCRLRDMTYSAPIFVNIEYTRNKQIISKRDVHIGNIPIMLRSSNCVLSKKT 164
Score = 70.5 bits (171), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 44/59 (74%)
Query: 276 CGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
CGLVKN ALM+H+TT++ E +L++ YN+G++ I + GEEL+S YLV +NG + GI
Sbjct: 970 CGLVKNFALMSHVTTDDSEGPLLRLAYNLGVQDILLVTGEELNSRNAYLVLLNGQIIGI 1028
>sp|P31814|RPOB_THECE DNA-directed RNA polymerase subunit B OS=Thermococcus celer GN=rpoB
PE=3 SV=1
Length = 1122
Score = 220 bits (560), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 114/266 (42%), Positives = 165/266 (62%), Gaps = 8/266 (3%)
Query: 914 LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
LVPYP HN PRNTY M KQ++G N + R+DT + + Y Q P+V S+ ++ F
Sbjct: 655 LVPYPEHNARPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLMHYPQVPLVNSRIMKAVGF 714
Query: 974 HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR- 1032
+ PAGQN +AV+SY+GY++EDA+IMNKAS++RG R +R + K+Y DR
Sbjct: 715 EERPAGQNFVVAVLSYAGYNMEDAIIMNKASIERGLARSTFFRTYEAEEKRYLGGQTDRF 774
Query: 1033 -ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAIS----MAT 1087
I P ++ + YRH LD+DGI+ P ++ + VLV ++ P + S +
Sbjct: 775 EIPDPTIQGYLGERYYRH--LDEDGIIFPESKVNGKDVLVGRTSPPRFLEEQSGLGGIIL 832
Query: 1088 PEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
E +E ++ + S ++KV+++ + L+K+ R R PE GDKF+SRHGQKGVIG
Sbjct: 833 QERRETSLTVRPSETGVVDKVIITETGDGTKLVKVTTRDLRIPEFGDKFASRHGQKGVIG 892
Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
LIV QEDMP+ ESGI PD+I+NPHG+
Sbjct: 893 LIVPQEDMPWTESGIVPDLIVNPHGI 918
Score = 200 bits (509), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 102/207 (49%), Positives = 139/207 (67%), Gaps = 1/207 (0%)
Query: 1164 PDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPE 1223
P + GL G + E +E ++ + S ++KV+++ + L+K+ R R PE
Sbjct: 818 PRFLEEQSGLGGII-LQERRETSLTVRPSETGVVDKVIITETGDGTKLVKVTTRDLRIPE 876
Query: 1224 IGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAG 1283
GDKF+SRHGQKGVIGLIV QEDMP+ ESGI PD+I+NPHG PSRMTVG+LIE + GK
Sbjct: 877 FGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLIEAIGGKVA 936
Query: 1284 LMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKL 1343
++G +GTAF G +++EL G+ + G+++ Y GITG LEA ++ G +YYQ+L
Sbjct: 937 SLKGRRVDGTAFIGEPEEKLRKELEELGFKHSGREVMYDGITGRRLEADVFVGVIYYQRL 996
Query: 1344 KHMVQDKIHARSRGPRVVLTRQPTGRR 1370
HMV DK+HARSRGP VLT+QPT R
Sbjct: 997 HHMVADKMHARSRGPVQVLTKQPTEGR 1023
Score = 100 bits (250), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 84/146 (57%), Gaps = 9/146 (6%)
Query: 188 IVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEK 247
+ N +R D ++ + A+ TG+W R GV+Q+L R +YIS L + R+ S +
Sbjct: 393 VRNSIRPDVLSERIEHALATGSWP-----GGRTGVSQLLDRTNYISTLSHLRRVTSPLSR 447
Query: 248 TRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIE 307
+ R L G+ WG +CP++TPEG CGLVKNLALM+ ITT E+ + + + +G+
Sbjct: 448 EQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMSQITTGVPEEEVREYLERLGVV 507
Query: 308 HIAMFNGEELSSPGVYLVFVNGILAG 333
I E +P ++ +++NG+L G
Sbjct: 508 PIE----ERRPNPDLWRLYLNGVLVG 529
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 69/137 (50%), Gaps = 25/137 (18%)
Query: 692 FDDFLYEGKIEYLDVNEGNDSHIA-----VSESGIRPGVTTHLEIAPFTLLGVCAGIELL 746
+ D + G IEYLD E ++ +A V+E THLE+ P +LG+ A
Sbjct: 605 WSDLVKMGVIEYLDAEEEENALVATWPWEVTEE------HTHLELMPAAILGIPAS---- 654
Query: 747 QYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMV 806
LVPYP HN PRNTY M KQ++G N + R+DT + + Y Q P+V
Sbjct: 655 ----------LVPYPEHNARPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLMHYPQVPLV 704
Query: 807 ESKTIRITNFHKLPAGK 823
S+ ++ F + PAG+
Sbjct: 705 NSRIMKAVGFEERPAGQ 721
Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%)
Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
A++ + + + H+ V K KA YL +M R++ DD+D+Y NKRL+LAG
Sbjct: 293 AQNIIDNNLLPHMGVEEKDRKAKAYYLGMMALRVLELSLGLRGEDDKDHYANKRLKLAGD 352
Query: 516 LLSLMFEDVFKRFNSELK 533
LL +F F + +++
Sbjct: 353 LLMDLFRVAFGQLVKDMQ 370
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 4/66 (6%)
Query: 343 KPEIEESFNYTRQTTPHECRLRDLTYSAPITVD-IEYTRG-SQRVVRSDLVIGRMPIMLQ 400
+PE +E+ + P + R+R+LTYSAPI ++ I G SQ V ++ IG +PIML+
Sbjct: 73 EPEFQEAQGQRKPLYPMDARIRNLTYSAPIYLELIPVVNGVSQEAV--EVRIGELPIMLK 130
Query: 401 SSKCVL 406
S C L
Sbjct: 131 SKACRL 136
Score = 42.0 bits (97), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
D W ++ ++ KEKGLV+ H+DS++ FI+ +++++ + D+ P F +K+ + +G
Sbjct: 15 DLWLVMEAYWKEKGLVRQHLDSYNAFIDHGMQEVIDEFGGVKPDI-PDFEVKFGKVRLG 72
>sp|O27124|RPOB1_METTH DNA-directed RNA polymerase subunit B' OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rpoB1 PE=3 SV=1
Length = 603
Score = 219 bits (558), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 106/264 (40%), Positives = 160/264 (60%), Gaps = 3/264 (1%)
Query: 913 GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
G++P+ +HN +PRNT + M KQA+G N R DT + L + Q P+V+++ I +T
Sbjct: 137 GIIPFANHNSSPRNTMEAGMTKQALGLYASNYDLRTDTRAHLLHHPQVPIVKTRIIDVTG 196
Query: 973 FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
+ + P+GQN +AVMSY GY++EDALI+NKASL+RG R +R+ + ++YP DR
Sbjct: 197 YDERPSGQNFVVAVMSYEGYNMEDALILNKASLERGLARSSFFRSYEAAERRYPGGQEDR 256
Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPT---ISVSAISMATPE 1089
P + +R LD+DGI+ P ++ VL+ K+ P +
Sbjct: 257 FEIPEKGVRGYRSESDYRHLDEDGIINPEAEVSSGDVLIGKTSPPRFLEEIDEFGTVAER 316
Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
+E V+ + ++ VL++ E + L K+ +R+ R+PE+GDKF+SRHGQKGV+GLI
Sbjct: 317 RRETSVTVRHGEKGIVDAVLLTETVEGSRLAKIRVREQRQPELGDKFASRHGQKGVVGLI 376
Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
V QEDMPF E GI PD+I+NPH +
Sbjct: 377 VSQEDMPFTEDGIVPDLIVNPHAI 400
Score = 206 bits (525), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 99/190 (52%), Positives = 133/190 (70%)
Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
+E V+ + ++ VL++ E + L K+ +R+ R+PE+GDKF+SRHGQKGV+GLIV
Sbjct: 318 RETSVTVRHGEKGIVDAVLLTETVEGSRLAKIRVREQRQPELGDKFASRHGQKGVVGLIV 377
Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
QEDMPF E GI PD+I+NPH PSRM+VG+++E+LAGKA MEG +GT F G D
Sbjct: 378 SQEDMPFTEDGIVPDLIVNPHAIPSRMSVGQVLEMLAGKAACMEGRRVDGTPFTGEDEDD 437
Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
++E L +G+ G + Y+GITGE +EA I+ G YYQKL HM DK++ARSRGP VL
Sbjct: 438 IKEALRANGFETAGVESLYNGITGERIEAEIFIGVAYYQKLHHMTTDKVYARSRGPVQVL 497
Query: 1363 TRQPTGRRWK 1372
TRQPT R +
Sbjct: 498 TRQPTEGRAR 507
Score = 94.4 bits (233), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 76/136 (55%), Gaps = 15/136 (11%)
Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
G +DD + G IEYLD E +++IA+S I THLEI P T+LG+CAGI
Sbjct: 84 GEMSWDDLIAAGIIEYLDAEEEENAYIAMSPDEIN-DEHTHLEIDPSTMLGICAGI---- 138
Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
+P+ +HN +PRNT + M KQA+G N R DT + L + Q P+V+
Sbjct: 139 ----------IPFANHNSSPRNTMEAGMTKQALGLYASNYDLRTDTRAHLLHHPQVPIVK 188
Query: 808 SKTIRITNFHKLPAGK 823
++ I +T + + P+G+
Sbjct: 189 TRIIDVTGYDERPSGQ 204
>sp|Q42877|RPB2_SOLLC DNA-directed RNA polymerase II subunit RPB2 OS=Solanum lycopersicum
GN=RPB2 PE=2 SV=1
Length = 1191
Score = 216 bits (550), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 111/270 (41%), Positives = 167/270 (61%), Gaps = 19/270 (7%)
Query: 914 LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
++P+P HNQ+PRNTYQ AMGKQAMG N Q R+DTL Y L Y Q+P+V ++ + +F
Sbjct: 717 IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 776
Query: 974 HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
+LPAG NA +A+ YSGY+ ED++IMN++S+DRGF R L +R+ + ++
Sbjct: 777 RQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR---------DEEKK 827
Query: 1034 LGPLLEADTRKPV------YRHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
+G L++ D +P RH + LD DG+ PG ++ V++ K+ P A
Sbjct: 828 MGTLVKEDFGRPDRASTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDAQG 887
Query: 1085 MATP-EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1143
A+ K+ S + S +++VL+++N++ +K+ +R R P+IGDKFSSRHGQK
Sbjct: 888 QASRYTRKDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQK 947
Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
G +G+ QEDMP+ GI PDII+NPH +
Sbjct: 948 GTVGMTYTQEDMPWTVEGITPDIIVNPHAI 977
Score = 181 bits (460), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 87/188 (46%), Positives = 121/188 (64%)
Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
K+ S + S +++VL+++N++ +K+ +R R P+IGDKFSSRHGQKG +G+
Sbjct: 895 KDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTY 954
Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
QEDMP+ GI PDII+NPH PSRMT+G+LIE + GK G + T F + +
Sbjct: 955 TQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDN 1014
Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
+ + L + GY +G + Y+G TG L A I+ GP YYQ+LKHMV DKIH+R RGP +L
Sbjct: 1015 ISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQIL 1074
Query: 1363 TRQPTGRR 1370
TRQP R
Sbjct: 1075 TRQPAEGR 1082
Score = 120 bits (300), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 64/146 (43%), Positives = 88/146 (60%), Gaps = 8/146 (5%)
Query: 192 MRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKV 251
++ TIT+ L ++ TGNW R GV+QVL+RL+Y S L + R+NS + K+
Sbjct: 439 IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKL 498
Query: 252 SGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAM 311
+ PR L SQWGM+CP++TPEG+ACGLVKNLALM +IT + +L+ + G E
Sbjct: 499 AKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTE---- 554
Query: 312 FNGEELSS---PGVYLVFVNGILAGI 334
N EE+S P +FVNG GI
Sbjct: 555 -NFEEISPAVIPQATKIFVNGTWVGI 579
Score = 104 bits (259), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 88/172 (51%), Gaps = 40/172 (23%)
Query: 677 RPTFLNMHQFLGFKRFD----------------DFLYEGKIEYLDVNEGNDSHIAVS--- 717
RP F+ Q L K+ D D + +G IEY+D E + I+++
Sbjct: 625 RPLFIVEKQRLMIKKKDIQTLQQRESPDEGGWHDLVAKGYIEYIDTEEEETTMISMTIND 684
Query: 718 --ESGIRPG-----VTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNT 770
++ + PG TH EI P +LGVCA I +P+P HNQ+PRNT
Sbjct: 685 LVQARLNPGDAYSDTYTHCEIHPSLILGVCASI--------------IPFPDHNQSPRNT 730
Query: 771 YQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAG 822
YQ AMGKQAMG N Q R+DTL Y L Y Q+P+V ++ + +F +LPAG
Sbjct: 731 YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG 782
Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 14/114 (12%)
Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
A++ L + H+ V KA Y +I R++L DDRD+YGNKRL+LAG
Sbjct: 343 AKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGP 402
Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYGN 555
LL +F +F++ ++ K+ NL + + SG + L GN
Sbjct: 403 LLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGN 456
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 19/85 (22%)
Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVR------------- 387
+ KP + ES T P RLR+LTYSAP+ VD+ ++RV++
Sbjct: 94 LSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV-----TKRVIKKGHDGEEVTETQD 148
Query: 388 -SDLVIGRMPIMLQSSKCVLRNKTE 411
+ + IG++PIML+SS C L +E
Sbjct: 149 FTKVFIGKVPIMLRSSYCTLYQNSE 173
Score = 42.4 bits (98), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Query: 108 DSPEI--RDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANI 154
D EI D W ++ ++ +EKGLV+ +DSFD FI +++++ +A+I
Sbjct: 16 DEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADI 64
>sp|Q02061|RPB2_SCHPO DNA-directed RNA polymerase II subunit RPB2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpb2 PE=1 SV=2
Length = 1210
Score = 215 bits (547), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 104/263 (39%), Positives = 161/263 (61%), Gaps = 3/263 (1%)
Query: 914 LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
++P+P HNQ+PRNTYQ AMGKQAMG N Q R+DT+ L Y Q+P+ ++++ F
Sbjct: 744 IIPFPDHNQSPRNTYQSAMGKQAMGVYLTNYQVRMDTMANILYYPQKPLATTRSMEYLKF 803
Query: 974 HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
+LPAGQNA +A++ YSGY+ ED++IMN+AS+DRG R + YR K+ +
Sbjct: 804 RELPAGQNAIVAILCYSGYNQEDSIIMNQASIDRGLFRSIFYRTYTDQEKKIGMTVMEEF 863
Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPT-ISVSAISMATPEY-- 1090
P+ R + L+ DG++APG ++ +++ K+ P + + T +
Sbjct: 864 ERPVRSTTLRMKHGTYDKLEDDGLIAPGTRVSGEDIIIGKTAPIPLDHEELGQRTQLHAK 923
Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
++V + + +++V+V++N E +K+ +R TR P+IGDKF+SRHGQKG IG+
Sbjct: 924 RDVSTPLRSTESGIVDQVMVTTNQEGLKFVKVRMRSTRIPQIGDKFASRHGQKGTIGMTY 983
Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
EDMPF+ GI PDII+NPH +
Sbjct: 984 RHEDMPFSAQGIVPDIIINPHAI 1006
Score = 180 bits (456), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 85/190 (44%), Positives = 119/190 (62%)
Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
++V + + +++V+V++N E +K+ +R TR P+IGDKF+SRHGQKG IG+
Sbjct: 924 RDVSTPLRSTESGIVDQVMVTTNQEGLKFVKVRMRSTRIPQIGDKFASRHGQKGTIGMTY 983
Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
EDMPF+ GI PDII+NPH PSRMTV L+E K + G + T F +
Sbjct: 984 RHEDMPFSAQGIVPDIIINPHAIPSRMTVAHLVECQLSKVSALSGFEGDATPFTDVTVEA 1043
Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
V + L HG+ +G ++ Y G TG L A ++ GP YYQ+LKH+V DKIHAR+RGP +L
Sbjct: 1044 VSKLLRSHGFQSRGFEVMYHGHTGRKLVAQVFLGPTYYQRLKHLVDDKIHARARGPVQIL 1103
Query: 1363 TRQPTGRRWK 1372
TRQP R +
Sbjct: 1104 TRQPVEGRSR 1113
Score = 117 bits (292), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 95/151 (62%), Gaps = 3/151 (1%)
Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
+F++ ++ + ITN L ++ TGNW +R + R GV+QVL+R ++ S L + R N+
Sbjct: 427 EFNLTLAVKSNIITNGLRYSLATGNWGDQKRSMVNRVGVSQVLNRYTFASTLSHLRRTNT 486
Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
+ K++ PR L + WGM+CP++TPEG+ACGLVKNL+LM++++ + +++ +
Sbjct: 487 PIGRDGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSYVSVGSPSAPIIEFLEE 546
Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
G+E + +N +SP VFVNG+ G+
Sbjct: 547 WGLETLEDYNPS--ASPNATKVFVNGVWLGV 575
Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 75/156 (48%), Gaps = 42/156 (26%)
Query: 699 GKIEYLDVNEGNDSHIAVS----------ESG------------IRPG------VTTHLE 730
G IEYLD E IA+S ++G ++P TH E
Sbjct: 672 GLIEYLDAEEEETVMIAMSPEDLEASRQMQAGYEVKEELDPAQRVKPAPNPHVHAWTHCE 731
Query: 731 IAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNR 790
I P +LG+ A I +P+P HNQ+PRNTYQ AMGKQAMG N Q R
Sbjct: 732 IHPAMILGILASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVYLTNYQVR 777
Query: 791 IDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
+DT+ L Y Q+P+ ++++ F +LPAG+ I
Sbjct: 778 MDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAI 813
Score = 57.4 bits (137), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 56/114 (49%), Gaps = 14/114 (12%)
Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
A D L + HI + KA +L MI RM+L + DDRD++G KRL+LAG
Sbjct: 338 AHDILQKELLPHITTMEGFETRKAFFLGYMIHRMLLCALERREPDDRDHFGKKRLDLAGP 397
Query: 516 LLSLMFEDVFKRFNSEL-----------KETNLSGVVN---LVSGWWFELKYGN 555
LL+ +F +F++ ++ +E NL+ V + +G + L GN
Sbjct: 398 LLASLFRMLFRKMTRDVYKYMQKCVETNREFNLTLAVKSNIITNGLRYSLATGN 451
Score = 41.6 bits (96), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 17/83 (20%)
Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIE-----------------YTRGSQ 383
+ +P + E+ T P E RLR+LTYS+P+ VD+ + +
Sbjct: 84 LSRPTMTEADGSTTTMFPQEARLRNLTYSSPLYVDMRKKVMVAADSNVPIGEEEWLVEEE 143
Query: 384 RVVRSDLVIGRMPIMLQSSKCVL 406
S + IG++PIML+S+ C+L
Sbjct: 144 DEEPSKVFIGKIPIMLRSTFCIL 166
>sp|P09845|RPOB1_METTW DNA-directed RNA polymerase subunit B' OS=Methanothermobacter
thermoautotrophicus (strain Winter) GN=rpoB1 PE=3 SV=2
Length = 604
Score = 215 bits (547), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 106/265 (40%), Positives = 160/265 (60%), Gaps = 4/265 (1%)
Query: 913 GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
G++P+ +HN +PRNT + M KQA+G N R DT + L + Q P+V+++ I +T
Sbjct: 137 GIIPFANHNSSPRNTMEAGMTKQALGLYASNYNLRTDTRAHLLHHPQVPIVKTRIIDVTG 196
Query: 973 FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
+ + P+GQN +AVMSY GY++EDALI+NKASL+RG R +R+ + ++YP DR
Sbjct: 197 YDERPSGQNFVVAVMSYEGYNMEDALILNKASLERGLARSSFFRSYEATERRYPGGQEDR 256
Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMP---TISVSAISMATPE 1089
P + +R LD+DGI+ P ++ VL+ K+ P +
Sbjct: 257 FEIPEKGVRGYRSERDYRHLDEDGIINPETEVSSGDVLIGKTSPPRFLEEIDEFGTVAER 316
Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPE-IGDKFSSRHGQKGVIGL 1148
+E V+ + ++ VL++ E + L K+ +R+ R+PE IGDKF+SRHGQKGV+GL
Sbjct: 317 RRETSVTVRHGEEGIVDAVLLTETVEGSRLAKIRVREQRQPEFIGDKFASRHGQKGVVGL 376
Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
IV QEDMPF E G+ PD+I+NPH +
Sbjct: 377 IVSQEDMPFTEDGVVPDLIVNPHAI 401
Score = 202 bits (514), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 99/191 (51%), Positives = 134/191 (70%), Gaps = 1/191 (0%)
Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPE-IGDKFSSRHGQKGVIGLI 1241
+E V+ + ++ VL++ E + L K+ +R+ R+PE IGDKF+SRHGQKGV+GLI
Sbjct: 318 RETSVTVRHGEEGIVDAVLLTETVEGSRLAKIRVREQRQPEFIGDKFASRHGQKGVVGLI 377
Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
V QEDMPF E G+ PD+I+NPH PSRM+VG+++E+LAGKA MEG +GT F G +
Sbjct: 378 VSQEDMPFTEDGVVPDLIVNPHAIPSRMSVGQVLEMLAGKAACMEGRRVDGTPFTGEEEK 437
Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
D++E L +G+ G + Y+GITGE +EA I+ G YYQKL HM D+I+ARSRGP V
Sbjct: 438 DLKEALKANGFESAGVETLYNGITGERIEAEIFIGVAYYQKLHHMTTDRIYARSRGPVQV 497
Query: 1362 LTRQPTGRRWK 1372
LTRQPT R +
Sbjct: 498 LTRQPTEGRAR 508
Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 77/136 (56%), Gaps = 15/136 (11%)
Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
G +DD + +G IEYLD E +++IA+S + THLEI P T+LG+CAGI
Sbjct: 84 GEMEWDDLISQGIIEYLDAEEEENTYIAMSPEEVTEE-HTHLEIDPSTMLGICAGI---- 138
Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
+P+ +HN +PRNT + M KQA+G N R DT + L + Q P+V+
Sbjct: 139 ----------IPFANHNSSPRNTMEAGMTKQALGLYASNYNLRTDTRAHLLHHPQVPIVK 188
Query: 808 SKTIRITNFHKLPAGK 823
++ I +T + + P+G+
Sbjct: 189 TRIIDVTGYDERPSGQ 204
>sp|P38420|RPB2_ARATH DNA-directed RNA polymerase II subunit RPB2 OS=Arabidopsis thaliana
GN=RPB135 PE=2 SV=2
Length = 1188
Score = 214 bits (546), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 110/271 (40%), Positives = 169/271 (62%), Gaps = 21/271 (7%)
Query: 914 LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
++P+P HNQ+PRNTYQ AMGKQAMG N Q R+DTL Y L Y Q+P+V ++ + +F
Sbjct: 718 IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 777
Query: 974 HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
+LPAG NA +A+ YSGY+ ED++IMN++S+DRGF R L +R+ + ++
Sbjct: 778 RQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR---------DEEKK 828
Query: 1034 LGPLLEADTRKPV------YRHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
+G L++ D +P RH + LD DG+ PG ++ V++ K+ P IS
Sbjct: 829 MGTLVKEDFGRPDRGSTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP-ISQDEAQ 887
Query: 1085 MATPEY--KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQ 1142
+ Y ++ +S + S +++VL+++N++ +K+ +R R P+IGDKFSSRHGQ
Sbjct: 888 GQSSRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 947
Query: 1143 KGVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
KG +G+ QEDMP+ G+ PDII+NPH +
Sbjct: 948 KGTVGMTYTQEDMPWTIEGVTPDIIVNPHAI 978
Score = 179 bits (454), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 85/184 (46%), Positives = 120/184 (65%)
Query: 1187 VSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQED 1246
+S + S +++VL+++N++ +K+ +R R P+IGDKFSSRHGQKG +G+ QED
Sbjct: 900 ISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 959
Query: 1247 MPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEE 1306
MP+ G+ PDII+NPH PSRMT+G+LIE + GK G + T F + ++ +
Sbjct: 960 MPWTIEGVTPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 1019
Query: 1307 LIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQP 1366
L + GY +G + Y+G TG L A I+ GP YYQ+LKHMV DKIH+R RGP +LTRQP
Sbjct: 1020 LHKCGYQMRGFERMYNGHTGRPLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP 1079
Query: 1367 TGRR 1370
R
Sbjct: 1080 AEGR 1083
Score = 120 bits (301), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 63/146 (43%), Positives = 89/146 (60%), Gaps = 8/146 (5%)
Query: 192 MRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKV 251
++ TIT+ L ++ TGNW R GV+QVL+RL+Y S L + R+NS + K+
Sbjct: 440 IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKL 499
Query: 252 SGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAM 311
+ PR L SQWGM+CP++TPEG+ACGLVKNLALM +IT + +L+ + G E
Sbjct: 500 AKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTE---- 555
Query: 312 FNGEELSS---PGVYLVFVNGILAGI 334
N EE+S P +FVNG+ G+
Sbjct: 556 -NFEEISPSVIPQATKIFVNGMWVGV 580
Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/138 (40%), Positives = 78/138 (56%), Gaps = 24/138 (17%)
Query: 695 FLYEGKIEYLDVNEGNDSHIAVS-----ESGIRPGVT-----THLEIAPFTLLGVCAGIE 744
+ +G IEY+D E + I+++ ++ +RP TH EI P +LGVCA I
Sbjct: 660 LVAKGFIEYIDTEEEETTMISMTISDLVQARLRPEEAYTENYTHCEIHPSLILGVCASI- 718
Query: 745 LLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRP 804
+P+P HNQ+PRNTYQ AMGKQAMG N Q R+DTL Y L Y Q+P
Sbjct: 719 -------------IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKP 765
Query: 805 MVESKTIRITNFHKLPAG 822
+V ++ + +F +LPAG
Sbjct: 766 LVTTRAMEHLHFRQLPAG 783
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 57/121 (47%), Gaps = 14/121 (11%)
Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
K+ + ARD L + H+ + KA Y +I R++L DDRD+YGNK
Sbjct: 337 KEKRIKYARDILQKEMLPHVGIGEHCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNK 396
Query: 509 RLELAGSLLSLMFEDVFKRFNSEL-----------KETNLSGVV---NLVSGWWFELKYG 554
RL+LAG LL +F +F++ ++ KE NL + + SG + L G
Sbjct: 397 RLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKEVNLQFAIKAKTITSGLKYSLATG 456
Query: 555 N 555
N
Sbjct: 457 N 457
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 19/85 (22%)
Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVR------------- 387
+ KP + ES T P RLR+LTYSAP+ VD+ ++RV++
Sbjct: 95 LSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV-----TKRVIKKGHDGEEVTETQD 149
Query: 388 -SDLVIGRMPIMLQSSKCVLRNKTE 411
+ + IG++PIML+SS C L +E
Sbjct: 150 FTKVFIGKVPIMLRSSYCTLFQNSE 174
Score = 42.4 bits (98), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Query: 108 DSPEI--RDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANI 154
D EI D W ++ ++ +EKGLV+ +DSFD FI +++++ +A+I
Sbjct: 17 DDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADI 65
>sp|Q10578|RPB2_CAEEL DNA-directed RNA polymerase II subunit RPB2 OS=Caenorhabditis elegans
GN=rpb-2 PE=2 SV=2
Length = 1193
Score = 213 bits (542), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 108/266 (40%), Positives = 168/266 (63%), Gaps = 9/266 (3%)
Query: 914 LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
++P+P HNQ+PRNTYQ AMGKQAMG N R+DTL + L Y Q+P+V ++++ F
Sbjct: 716 IIPFPDHNQSPRNTYQSAMGKQAMGVYTTNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRF 775
Query: 974 HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
++LPAG NA +A++SYSGY+ ED++IMN +++DRG R + YR+ + N + I
Sbjct: 776 NELPAGINAIVAILSYSGYNQEDSVIMNNSAIDRGLFRSVFYRSYRDNEANLDNANEELI 835
Query: 1034 LGPLLE--ADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKS--MPTI--SVSAISMAT 1087
P E + R +Y LD+DGI++PG ++ V++ K+ +P I + A
Sbjct: 836 EKPTREKCSGMRHSLYDK--LDEDGIISPGMRVSGDDVIIGKTVALPDIDDDLDASGKKY 893
Query: 1088 PEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
P+ ++ + S +++V++S NS+ +K+ +R R P+IGDKF+SRHGQKG +G
Sbjct: 894 PK-RDASTFLRSSETGIVDQVMLSLNSDGNKFVKIRMRSVRLPQIGDKFASRHGQKGTMG 952
Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
++ QEDMPF G+ PDII+NPH +
Sbjct: 953 IMYRQEDMPFTAEGLTPDIIINPHAV 978
Score = 182 bits (462), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 96/236 (40%), Positives = 142/236 (60%), Gaps = 10/236 (4%)
Query: 1142 QKGVI--GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEK 1199
+ G+I G+ V +D+ ++ PDI L + ++ + S +++
Sbjct: 856 EDGIISPGMRVSGDDVIIGKTVALPDI---DDDLDASGKKYPKRDASTFLRSSETGIVDQ 912
Query: 1200 VLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDII 1259
V++S NS+ +K+ +R R P+IGDKF+SRHGQKG +G++ QEDMPF G+ PDII
Sbjct: 913 VMLSLNSDGNKFVKIRMRSVRLPQIGDKFASRHGQKGTMGIMYRQEDMPFTAEGLTPDII 972
Query: 1260 MNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQE---ELIRHGYNYQG 1316
+NPH PSRMT+G LIE L GK +G + T F T V+VQ+ L +GY+ +G
Sbjct: 973 INPHAVPSRMTIGHLIECLQGKLSANKGEIGDATPFNDT--VNVQKISGLLCEYGYHLRG 1030
Query: 1317 KDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
++ Y+G TG+ L I+ GP YYQ+LKHMV DKIH+R+RGP ++ RQP R +
Sbjct: 1031 NEVMYNGHTGKKLTTQIFFGPTYYQRLKHMVDDKIHSRARGPIQMMNRQPMEGRAR 1086
Score = 111 bits (278), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 67/171 (39%), Positives = 99/171 (57%), Gaps = 14/171 (8%)
Query: 174 ADKIIPKIKAAQFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYI 232
A K I K D+ ++ TIT LT ++ TGNW ++ R GV+QVL+RL+Y
Sbjct: 425 AQKYINKNDDFALDVC--VKTSTITRGLTYSLATGNWGDQKKAHQSRAGVSQVLNRLTYT 482
Query: 233 SGLGMMTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTEN 292
+ L + R NS + K++ PR L +QWGM+CP++TPEG+A GLVKNLALM +I+ +
Sbjct: 483 ATLSHLRRANSPIGREGKLAKPRQLHNTQWGMVCPAETPEGQAVGLVKNLALMAYISVGS 542
Query: 293 DEKNMLKIMYNIGIEHIAMFNGEELSSPGVY---LVFVNGILAGITCHHKE 340
+ +L+ + E +M N EE+S + +FVNG GI H+E
Sbjct: 543 LPEPILEFL-----EEWSMENLEEVSPSAIADATKIFVNGAWVGI---HRE 585
Score = 100 bits (250), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 55/135 (40%), Positives = 75/135 (55%), Gaps = 18/135 (13%)
Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPG----VTTHLEIAPFTLLGVCAGIELLQ 747
+ D + G +E +D E S IA+ +R G TH EI P +LGVCA I
Sbjct: 661 WSDLVGGGVVELIDSMEEETSMIAMMPEDLRSGGYCDTHTHCEIHPAMILGVCASI---- 716
Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
+P+P HNQ+PRNTYQ AMGKQAMG N R+DTL + L Y Q+P+V
Sbjct: 717 ----------IPFPDHNQSPRNTYQSAMGKQAMGVYTTNFHVRMDTLAHVLYYPQKPLVT 766
Query: 808 SKTIRITNFHKLPAG 822
++++ F++LPAG
Sbjct: 767 TRSMEYLRFNELPAG 781
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 46/80 (57%)
Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
AR+ L + H+ V KA ++ M+ R++LA LDDRD+ GNKRL+LAG
Sbjct: 345 AREILQKELLPHVGVSEHCETKKAFFIGYMVHRLLLAALGRRELDDRDHIGNKRLDLAGP 404
Query: 516 LLSLMFEDVFKRFNSELKET 535
LL+ +F +F+ E++ T
Sbjct: 405 LLAFLFRSLFRNLLKEMRMT 424
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 39/58 (67%), Gaps = 4/58 (6%)
Query: 358 PHECRLRDLTYSAPITVDIE--YTR--GSQRVVRSDLVIGRMPIMLQSSKCVLRNKTE 411
P+E RLR+LTY++P+ VDI TR + V + +G++P+ML+SS C+L N T+
Sbjct: 117 PNEARLRNLTYASPLYVDITKVVTRDDSATEKVYDKVFVGKVPVMLRSSYCMLSNMTD 174
Score = 37.7 bits (86), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 35/60 (58%), Gaps = 8/60 (13%)
Query: 98 MVTD--ETSKLKDSPEIRDK------WKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQ 149
MV D + + DS EI + W ++ ++ EKGLV+ +DSFD F+ + ++++++
Sbjct: 8 MVNDPMDGDYIDDSDEISAEAWQEACWVVISAYFDEKGLVRQQLDSFDEFVQMNVQRIVE 67
>sp|Q60181|RPOB1_METJA DNA-directed RNA polymerase subunit B' OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=rpoB1 PE=3 SV=1
Length = 636
Score = 213 bits (542), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 111/264 (42%), Positives = 159/264 (60%), Gaps = 3/264 (1%)
Query: 913 GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
G+ PYP HN APR T AMGKQ++G N + R+DT + L Y Q P+V +K I
Sbjct: 142 GVAPYPEHNSAPRITMAAAMGKQSLGIPMSNIKWRLDTRGHYLHYPQVPIVRTKHQEILG 201
Query: 973 FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
F K PAGQN +A+MSY GY++EDA++ NK+++DRG GR +R ++YP DR
Sbjct: 202 FDKRPAGQNFVVAIMSYEGYNMEDAIVFNKSAIDRGLGRSTFFRTYDACERRYPGGQMDR 261
Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPT--ISVSAISM-ATPE 1089
P + +R L++DGIVA + V+V K+ P + I++ P+
Sbjct: 262 FEIPDKGVRGYRSEECYRYLEEDGIVAVESHVKGGDVIVGKTSPPRFLEEHEITIQVKPQ 321
Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
++ V + Y++KV+++ E L+K+ +R R PE+GDKF+SRHGQKGV+GL
Sbjct: 322 RRDSSVVVRHGEEGYIDKVILTETKEGNRLVKVKVRDLRIPELGDKFASRHGQKGVMGLT 381
Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
V QED+PF ESGI PDII+NPH +
Sbjct: 382 VPQEDLPFTESGIVPDIIINPHAI 405
Score = 203 bits (516), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 98/178 (55%), Positives = 126/178 (70%)
Query: 1195 SYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGI 1254
Y++KV+++ E L+K+ +R R PE+GDKF+SRHGQKGV+GL V QED+PF ESGI
Sbjct: 335 GYIDKVILTETKEGNRLVKVKVRDLRIPELGDKFASRHGQKGVMGLTVPQEDLPFTESGI 394
Query: 1255 CPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNY 1314
PDII+NPH PSRMTVG+L+E+L GK G +EG +GT F G K D+++ L G+ +
Sbjct: 395 VPDIIINPHAIPSRMTVGQLLEMLGGKVGALEGRRIDGTIFSGEKEWDLRKALEALGFKH 454
Query: 1315 QGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
GK++ Y G TG+ E IY G YYQKL H+V KIHARSRGP VLTRQPT R +
Sbjct: 455 HGKEVMYDGKTGKKFEVEIYIGIAYYQKLHHLVAGKIHARSRGPVQVLTRQPTEGRAR 512
Score = 97.4 bits (241), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 56/132 (42%), Positives = 73/132 (55%), Gaps = 15/132 (11%)
Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKR 751
F D + EG IEYLD E +++IA+SE + THLEI P T+LG+ AG+
Sbjct: 93 FSDLVKEGVIEYLDAEEEENAYIALSEEELTEK-HTHLEIDPLTILGIGAGV-------- 143
Query: 752 FHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTI 811
PYP HN APR T AMGKQ++G N + R+DT + L Y Q P+V +K
Sbjct: 144 ------APYPEHNSAPRITMAAAMGKQSLGIPMSNIKWRLDTRGHYLHYPQVPIVRTKHQ 197
Query: 812 RITNFHKLPAGK 823
I F K PAG+
Sbjct: 198 EILGFDKRPAGQ 209
>sp|P11513|RPOB_SULAC DNA-directed RNA polymerase subunit B OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=rpoB PE=3 SV=2
Length = 1126
Score = 209 bits (533), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 102/262 (38%), Positives = 160/262 (61%), Gaps = 2/262 (0%)
Query: 914 LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
++PYP HNQ+PRNTYQ AM KQ++G N Q R DT + L Y Q P+V+++ + + +
Sbjct: 652 IIPYPEHNQSPRNTYQSAMAKQSLGLYASNYQIRTDTRAHLLHYPQMPLVQTRMLGVIGY 711
Query: 974 HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
+ PAG NA +A+MSY+GY++ED++IMNK+S++RG R +R +YP D+I
Sbjct: 712 NDRPAGANAILAIMSYTGYNMEDSIIMNKSSIERGMYRSTFFRLYSTEEVKYPGGQEDKI 771
Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEY--K 1091
+ P K +R L+ +G+V+P ++ VL+ K P + +PE +
Sbjct: 772 VTPEAGVKGYKGKDYYRLLEDNGVVSPEVEVKGGDVLIGKVSPPRFLQEFKELSPEQAKR 831
Query: 1092 EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVE 1151
+ + + ++ VL++ E L+K+ +R R PEIGDKF++RHGQKGV+G++++
Sbjct: 832 DTSIVTRHGENGIVDLVLITETLEGNKLVKVRVRDLRIPEIGDKFATRHGQKGVVGILID 891
Query: 1152 QEDMPFNESGICPDIIMNPHGL 1173
Q DMP+ GI PDII+NPH L
Sbjct: 892 QVDMPYTAKGIVPDIILNPHAL 913
Score = 176 bits (445), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 84/174 (48%), Positives = 121/174 (69%), Gaps = 1/174 (0%)
Query: 1200 VLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDII 1259
VL++ E L+K+ +R R PEIGDKF++RHGQKGV+G++++Q DMP+ GI PDII
Sbjct: 848 VLITETLEGNKLVKVRVRDLRIPEIGDKFATRHGQKGVVGILIDQVDMPYTAKGIVPDII 907
Query: 1260 MNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGT-KLVDVQEELIRHGYNYQGKD 1318
+NPH PSRMT+G+++E + GK + G + T F T KL ++Q+E+++ G+ +
Sbjct: 908 LNPHALPSRMTIGQIMEAIGGKYAALSGKPVDATPFLETPKLQEMQKEILKLGHLPDSTE 967
Query: 1319 IFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
+ Y G TG+ L++ I G VYYQKL HMV DK+HAR+RGP +LTRQPT R +
Sbjct: 968 VVYDGRTGQKLKSRILFGIVYYQKLHHMVADKMHARARGPVQILTRQPTEGRAR 1021
Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 78/135 (57%), Gaps = 15/135 (11%)
Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKR 751
FDD + +GKIE++D E ++++A++ + P THLEI P +LG+ A I
Sbjct: 602 FDDLVKQGKIEFIDAEEEENAYVALNPQDLTPD-HTHLEIWPSAILGIIASI-------- 652
Query: 752 FHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTI 811
+PYP HNQ+PRNTYQ AM KQ++G N Q R DT + L Y Q P+V+++ +
Sbjct: 653 ------IPYPEHNQSPRNTYQSAMAKQSLGLYASNYQIRTDTRAHLLHYPQMPLVQTRML 706
Query: 812 RITNFHKLPAGKCQI 826
+ ++ PAG I
Sbjct: 707 GVIGYNDRPAGANAI 721
Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 92/177 (51%), Gaps = 13/177 (7%)
Query: 180 KIKAAQFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMT 239
K++ + + +R D IT + A+ TGNW R GV+Q+L R +++S L +
Sbjct: 371 KVRGRRLSLTALVRADIITERIRHALATGNWV-----GGRTGVSQLLDRTNWLSMLSHLR 425
Query: 240 RINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLK 299
R+ S + + R L G+QWG +CP +TPEG GLVKNLAL+ ++ +E + +
Sbjct: 426 RVVSSLARGQPNFEARDLHGTQWGRMCPFETPEGPNSGLVKNLALLAQVSVGINESVVER 485
Query: 300 IMYNIG---IEHIAMFNGEELSSPGVYL----VFVNGILAGITCHHKEVCKPEIEES 349
+ Y +G +E + E+ Y+ V++NG L G KE+ K +I ES
Sbjct: 486 VAYELGVVSVEDVIRRISEQNEDVEKYMSWSKVYLNGRLLGYYEDGKELAK-KIRES 541
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 94/234 (40%), Gaps = 25/234 (10%)
Query: 314 GEELSSPGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHECRLRDLTYSAPIT 373
GE+ PG Y + VNG + +++ + + + H ++ +
Sbjct: 140 GEDPKDPGGYFI-VNG-SEKVIIAQEDLATNRVLVDYGKSGSNITHVAKVTSSAAGYRVQ 197
Query: 374 VDIEYTRGSQRVVRSDLVIGRMP--IMLQSSKCVLRNKTEYTSSSRRASTSSVTMHSQRT 431
V IE + S + V GR+P I++++ V Y S + + ++
Sbjct: 198 VMIERLKDSTIQISFATVPGRIPFAIIMRALGFVTDRDIVYAVSLDPQIQNELLPSLEQA 257
Query: 432 SPLLSCKK----------LRQKRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMY 481
S + S ++ + QKR +K A + + H+ K K Y
Sbjct: 258 SSITSAEEALDFIGNRVAIGQKRENRIQK-----AEQVIDKYFLPHLGTSPEDRKKKGYY 312
Query: 482 LAVMIRRMV---LALSDPDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSEL 532
LA + +++ L +PD D+D+Y NKR+ LAG L + +F FK F +L
Sbjct: 313 LASAVNKILELYLGRREPD---DKDHYANKRVRLAGDLFTSLFRVAFKAFVKDL 363
Score = 40.4 bits (93), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 343 KPEIEESFNY-TRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQS 401
KP I E+ R+ TP E RLR+LTYS+PI + + + ++ IG +PIML+S
Sbjct: 64 KPSIRETDKGPMREITPMEARLRNLTYSSPIFLSMIPVENNIEGEPIEIYIGDLPIMLKS 123
Score = 38.9 bits (89), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 29/44 (65%)
Query: 115 KWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDV 158
+W + SF K +GLV+ H+DSF+ F+ ++++++ I ++V
Sbjct: 7 RWAIAESFFKTRGLVRQHLDSFNDFLRNKLQQVIYEQGEIVTEV 50
>sp|P08518|RPB2_YEAST DNA-directed RNA polymerase II subunit RPB2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPB2 PE=1 SV=2
Length = 1224
Score = 207 bits (528), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 104/267 (38%), Positives = 159/267 (59%), Gaps = 5/267 (1%)
Query: 911 SPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRI 970
+ ++P+P HNQ+PRNTYQ AMGKQAMG N R+DT+ L Y Q+P+ ++ +
Sbjct: 752 AASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMDTMANILYYPQKPLGTTRAMEY 811
Query: 971 TNFHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTH 1030
F +LPAGQNA +A+ YSGY+ ED++IMN++S+DRG R L +R+ K+Y
Sbjct: 812 LKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQEKKYGMSIT 871
Query: 1031 DRILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISM----A 1086
+ P R + LD DG++APG ++ V++ K+ P IS + A
Sbjct: 872 ETFEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGEDVIIGKTTP-ISPDEEELGQRTA 930
Query: 1087 TPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVI 1146
++ + + +++VLV++N + +K+ +R T+ P+IGDKF+SRHGQKG I
Sbjct: 931 YHSKRDASTPLRSTENGIVDQVLVTTNQDGLKFVKVRVRTTKIPQIGDKFASRHGQKGTI 990
Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGL 1173
G+ +EDMPF GI PD+I+NPH +
Sbjct: 991 GITYRREDMPFTAEGIVPDLIINPHAI 1017
Score = 184 bits (466), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 86/174 (49%), Positives = 117/174 (67%)
Query: 1197 LEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICP 1256
+++VLV++N + +K+ +R T+ P+IGDKF+SRHGQKG IG+ +EDMPF GI P
Sbjct: 949 VDQVLVTTNQDGLKFVKVRVRTTKIPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVP 1008
Query: 1257 DIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQG 1316
D+I+NPH PSRMTV LIE L K + GN + + F + + + L HGY +G
Sbjct: 1009 DLIINPHAIPSRMTVAHLIECLLSKVAALSGNEGDASPFTDITVEGISKLLREHGYQSRG 1068
Query: 1317 KDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRR 1370
++ Y+G TG+ L A I+ GP YYQ+L+HMV DKIHAR+RGP VLTRQP R
Sbjct: 1069 FEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGR 1122
Score = 112 bits (279), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 58/154 (37%), Positives = 92/154 (59%), Gaps = 3/154 (1%)
Query: 182 KAAQFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTR 240
+A F++ + TIT+ L A+ TGNW ++ M R GV+QVL+R +Y S L + R
Sbjct: 438 EAHDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRR 497
Query: 241 INSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKI 300
N+ + K++ PR L + WG++CP++TPEG+ACGLVKNL+LM+ I+ D ++
Sbjct: 498 TNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPMPIITF 557
Query: 301 MYNIGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
+ G+E + + + SP VFVNG+ G+
Sbjct: 558 LSEWGMEPLEDYVPHQ--SPDATRVFVNGVWHGV 589
Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 76/167 (45%), Gaps = 42/167 (25%)
Query: 688 GFKRFDDF-----LYEGKIEYLDVNEGNDSHIAVSESGIRPG------------------ 724
GF+ +++ L EG +EY+D E IA+ + P
Sbjct: 672 GFEDVEEYTWSSLLNEGLVEYIDAEEEESILIAMQPEDLEPAEANEENDLDVDPAKRIRV 731
Query: 725 -----VTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQA 779
TH EI P +LGV A I +P+P HNQ+PRNTYQ AMGKQA
Sbjct: 732 SHHATTFTHCEIHPSMILGVAASI--------------IPFPDHNQSPRNTYQSAMGKQA 777
Query: 780 MGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
MG N R+DT+ L Y Q+P+ ++ + F +LPAG+ I
Sbjct: 778 MGVFLTNYNVRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAI 824
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 59/121 (48%), Gaps = 14/121 (11%)
Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
K+ + A+D L + HI + KA +L MI R++L D DDRD++G K
Sbjct: 345 KEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKK 404
Query: 509 RLELAGSLLSLMFEDVFKRFN-----------SELKETNLSGVVN---LVSGWWFELKYG 554
RL+LAG LL+ +F+ +FK+ E + N+ +N + SG + L G
Sbjct: 405 RLDLAGPLLAQLFKTLFKKLTKDIFRYMQRTVEEAHDFNMKLAINAKTITSGLKYALATG 464
Query: 555 N 555
N
Sbjct: 465 N 465
Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 43/90 (47%), Gaps = 19/90 (21%)
Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDI-----EYTRGSQRVVRSDLV---- 391
V KP + ES T P E RLR+LTYS+ + VD+ E R ++ +L+
Sbjct: 97 VTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVKKRTYEAIDVPGRELKYELIAEES 156
Query: 392 ----------IGRMPIMLQSSKCVLRNKTE 411
IGR+PIML+S C L TE
Sbjct: 157 EDDSESGKVFIGRLPIMLRSKNCYLSEATE 186
Score = 37.7 bits (86), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 27/41 (65%)
Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANI 154
D W ++ +F +EKGLV +DSF+ F++ ++ ++ ++ +
Sbjct: 29 DSWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIICEDSTL 69
>sp|Q6FLD5|RPB2_CANGA DNA-directed RNA polymerase II subunit RPB2 OS=Candida glabrata
(strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL
Y-65) GN=RPB2 PE=3 SV=1
Length = 1223
Score = 207 bits (527), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 100/266 (37%), Positives = 157/266 (59%), Gaps = 3/266 (1%)
Query: 911 SPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRI 970
+ ++P+P HNQ+PRNTYQ AMGKQAMG N R+DT+ L Y Q+P+ ++ +
Sbjct: 751 AASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNFRMDTMANILYYPQKPLGTTRAMEY 810
Query: 971 TNFHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTH 1030
F +LPAGQNA +A+ YSGY+ ED++IMN++S+DRG R L +R+ K+Y
Sbjct: 811 LKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQEKKYGMSIT 870
Query: 1031 DRILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMAT 1087
+ P R + LD+DG++APG ++ +++ K+ P A
Sbjct: 871 ETFEKPQRTNTLRMKHGTYDKLDEDGLIAPGVRVSGEDIIIGKTTPIAPDEEELGQRTAY 930
Query: 1088 PEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
++ + + +++VL+++N + +K+ +R T+ P+IGDKF+SRHGQKG IG
Sbjct: 931 HSKRDASTPLRSTENGIVDQVLITTNQDGLKFVKVRVRTTKVPQIGDKFASRHGQKGTIG 990
Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
+ +EDMPF GI PD+I+NPH +
Sbjct: 991 ITYRREDMPFTAEGIVPDLIINPHAI 1016
Score = 184 bits (466), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 85/174 (48%), Positives = 117/174 (67%)
Query: 1197 LEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICP 1256
+++VL+++N + +K+ +R T+ P+IGDKF+SRHGQKG IG+ +EDMPF GI P
Sbjct: 948 VDQVLITTNQDGLKFVKVRVRTTKVPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVP 1007
Query: 1257 DIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQG 1316
D+I+NPH PSRMTV LIE L K + GN + + F + + + L HGY +G
Sbjct: 1008 DLIINPHAIPSRMTVAHLIECLLSKVAALSGNEGDASPFTDITVEGISKLLREHGYQSRG 1067
Query: 1317 KDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRR 1370
++ Y+G TG+ L A I+ GP YYQ+L+HMV DKIHAR+RGP VLTRQP R
Sbjct: 1068 FEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGR 1121
Score = 111 bits (277), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 114/233 (48%), Gaps = 6/233 (2%)
Query: 182 KAAQFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTR 240
+A F++ + TIT+ L A+ TGNW ++ M R GV+QVL+R +Y S L + R
Sbjct: 436 EANDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRR 495
Query: 241 INSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKI 300
N+ + K++ PR L + WG++CP++TPEG+ACGLVKNL+LM+ I+ D ++
Sbjct: 496 TNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGADPMPIITF 555
Query: 301 MYNIGIEHIAMFNGEELSSPGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHE 360
+ G+E + + + SP VFVNG+ G+ H E + P
Sbjct: 556 LSEWGMEPLEDYVPHQ--SPDATRVFVNGVWHGV--HRNPARLMETLRTLRRKGDINPEV 611
Query: 361 CRLRDL-TYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKTEY 412
+RD+ I D +V D +GR + ++ TEY
Sbjct: 612 SMIRDIREQELKIFTDAGRVYRPLFIVEDDEELGRKELKVRKGHVAKLMATEY 664
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 76/168 (45%), Gaps = 43/168 (25%)
Query: 688 GFKRFDDF-----LYEGKIEYLDVNEGNDSHIAVSESGIRPGVT---------------- 726
GF+ +D+ L EG +EY+D E IA+ + P
Sbjct: 670 GFEDAEDYTWSSLLNEGLVEYIDAEEEESILIAMQPEDLEPTAVEQDIPKENVDLAKRIK 729
Query: 727 --------THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQ 778
TH EI P +LGV A I +P+P HNQ+PRNTYQ AMGKQ
Sbjct: 730 VTHHATTFTHCEIHPSMILGVAASI--------------IPFPDHNQSPRNTYQSAMGKQ 775
Query: 779 AMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
AMG N R+DT+ L Y Q+P+ ++ + F +LPAG+ I
Sbjct: 776 AMGVFLTNYNFRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAI 823
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 59/121 (48%), Gaps = 14/121 (11%)
Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
K+ + A+D L + HI + KA +L MI R++L D DDRD++G K
Sbjct: 343 KEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKK 402
Query: 509 RLELAGSLLSLMFEDVFKRFN-----------SELKETNLSGVVN---LVSGWWFELKYG 554
RL+LAG LL+ +F+ +F++ E + N+ +N + SG + L G
Sbjct: 403 RLDLAGPLLAQLFKTLFRKLTKDIFRYMQRTVEEANDFNMKLAINAKTITSGLKYALATG 462
Query: 555 N 555
N
Sbjct: 463 N 463
Score = 47.4 bits (111), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 43/90 (47%), Gaps = 19/90 (21%)
Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDI-EYTRGSQRVVRSDL--------- 390
V KP + ES T P E RLR+LTYS+ + VD+ + T + V DL
Sbjct: 95 VTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVTKRTYEAVDVPGRDLNYQLIAEES 154
Query: 391 ---------VIGRMPIMLQSSKCVLRNKTE 411
IGR+PIML+S C L + TE
Sbjct: 155 EEDSESGKVFIGRLPIMLRSKNCYLSDATE 184
Score = 38.5 bits (88), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 27/41 (65%)
Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANI 154
D W ++ +F +EKGLV +DSF+ F++ ++ ++ ++ +
Sbjct: 27 DTWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIISEDSTL 67
>sp|A5DHT2|RPB2_PICGU DNA-directed RNA polymerase II subunit RPB2 OS=Meyerozyma
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 /
JCM 1539 / NBRC 10279 / NRRL Y-324) GN=RPB2 PE=3 SV=3
Length = 1236
Score = 207 bits (526), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 99/266 (37%), Positives = 158/266 (59%), Gaps = 3/266 (1%)
Query: 911 SPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRI 970
+ ++P+P HNQ+PRNTYQ AMGKQAMG N R+DT+ L Y Q+P+ ++ +
Sbjct: 761 AASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYSVRMDTMANILYYPQKPLATTRAMEH 820
Query: 971 TNFHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTH 1030
F +LPAGQNA +A+ YSGY+ ED++IMN++S+DRG R L +R + K+ +
Sbjct: 821 LKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRTYMDLEKRQGMKAL 880
Query: 1031 DRILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEY 1090
+ P R + LD DG++APG ++ +++ K+ P + +Y
Sbjct: 881 ETFEKPSRSDTLRLKHGTYEKLDDDGLIAPGIRVSGEDIIIGKTTPIPPDTEELGQRTQY 940
Query: 1091 ---KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
++ + + +++VL+++N + A +K+ +R T+ P+IGDKF+SRHGQKG +G
Sbjct: 941 HTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMRTTKVPQIGDKFASRHGQKGTVG 1000
Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
+ EDMPF GI PD+I+NPH +
Sbjct: 1001 VTYRHEDMPFTSQGIVPDLIINPHAI 1026
Score = 178 bits (452), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 84/174 (48%), Positives = 114/174 (65%)
Query: 1197 LEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICP 1256
+++VL+++N + A +K+ +R T+ P+IGDKF+SRHGQKG +G+ EDMPF GI P
Sbjct: 958 VDQVLLTTNGDGAKFVKVRMRTTKVPQIGDKFASRHGQKGTVGVTYRHEDMPFTSQGIVP 1017
Query: 1257 DIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQG 1316
D+I+NPH PSRMTV LIE L K + G + + F V + L HGY +G
Sbjct: 1018 DLIINPHAIPSRMTVAHLIECLLSKVSSLSGLEGDASPFTDVTAEAVSKLLREHGYQSRG 1077
Query: 1317 KDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRR 1370
++ Y G TG+ L A ++ GP YYQ+L+HMV DKIHAR+RGP VLTRQP R
Sbjct: 1078 FEVMYHGHTGKKLMAQVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGR 1131
Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 93/156 (59%), Gaps = 6/156 (3%)
Query: 186 FDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINSQ 244
F++ ++ TIT+ L ++ TGNW ++ M R GV+QVL+R +Y S L + R N+
Sbjct: 436 FNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTP 495
Query: 245 FEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNI 304
+ K++ PR L + WG++CP++TPEG+ACGLVKNL+LM+ I+ + +L +
Sbjct: 496 IGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTPSEPILYFLEEW 555
Query: 305 GIEHIAMFNGEELSSPGVYLVFVNGILAGITCHHKE 340
G+E + + +SP VFVNG+ G H+E
Sbjct: 556 GMEPLEDYVPS--NSPDSTRVFVNGVWVGT---HRE 586
Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 55/99 (55%), Gaps = 14/99 (14%)
Query: 728 HLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQ 787
H EI P +LGV A I +P+P HNQ+PRNTYQ AMGKQAMG N
Sbjct: 749 HCEIHPSMILGVAASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTNY 794
Query: 788 QNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
R+DT+ L Y Q+P+ ++ + F +LPAG+ I
Sbjct: 795 SVRMDTMANILYYPQKPLATTRAMEHLKFRELPAGQNAI 833
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 8/92 (8%)
Query: 441 RQKRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLD 500
R+KR Q A+D L + +I KA +L M+ R++L + D
Sbjct: 339 REKRIQY--------AKDILQKELLPNITQDEGFETRKAFFLGYMVNRLLLCALERKEPD 390
Query: 501 DRDYYGNKRLELAGSLLSLMFEDVFKRFNSEL 532
DRD++G KRL+LAG LL+ +F +FK+ ++
Sbjct: 391 DRDHFGKKRLDLAGPLLASLFRILFKKLTKDI 422
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 29/96 (30%)
Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSD----------- 389
+ KP E T P E RLR+LTYS+P+ VD+ ++RV++SD
Sbjct: 90 ISKPTQTEGDGTTHPMFPQEARLRNLTYSSPLYVDM-----TKRVLKSDDNAGNEHELEW 144
Query: 390 -------------LVIGRMPIMLQSSKCVLRNKTEY 412
+ +G++PIML+S C+LR+ E+
Sbjct: 145 IEEEIKDEEPSTKVYLGKVPIMLRSKFCMLRDLGEH 180
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 4/60 (6%)
Query: 98 MVTDETSKLKDSPEIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSD 157
M D++S + +PE D W ++ SF +EKGLV +DSFD FI I++L+ ++ + D
Sbjct: 10 MYDDDSSSI--TPE--DCWTVISSFFQEKGLVSQQLDSFDEFIESTIQELVWEDSRLILD 65
>sp|P41557|RPOB1_METVS DNA-directed RNA polymerase subunit B' OS=Methanococcus vannielii
(strain SB / ATCC 35089 / DSM 1224) GN=rpoB1 PE=3 SV=2
Length = 611
Score = 203 bits (516), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 107/264 (40%), Positives = 156/264 (59%), Gaps = 3/264 (1%)
Query: 913 GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
G+ PYP HN APR T AMGKQ++G N + R+DT + L Y Q P+V +K I
Sbjct: 138 GVAPYPEHNSAPRITMAAAMGKQSLGIPMANIKWRMDTRGHLLHYPQVPLVRTKHQEILG 197
Query: 973 FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
F K PAGQN +AVMSY GY++EDA ++NKASL+RG GR +R+ + K+YP D+
Sbjct: 198 FDKRPAGQNFVVAVMSYEGYNMEDAFVINKASLERGLGRSTFFRSYESFEKRYPGGQLDK 257
Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPT--ISVSAISMAT-PE 1089
P + +R L DG++ ++ V++ K+ P + I++ T +
Sbjct: 258 FEVPEKGVRGYRAEEAYRNLGDDGLIDLESEVRSGDVILGKTSPPRFLEEQEITLQTKSQ 317
Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
++ V+ + ++ V++S E L K+ +R R PE GDKF+SRHGQKGVIGL+
Sbjct: 318 RRDTSVTIRHGEEGVVDLVILSETKEGNRLGKVRVRDLRVPEFGDKFASRHGQKGVIGLV 377
Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
V QED+PF E G+ PD+I+NPH +
Sbjct: 378 VPQEDLPFTEDGVIPDLIINPHAI 401
Score = 184 bits (468), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 90/193 (46%), Positives = 125/193 (64%)
Query: 1180 TEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1239
++ ++ V+ + ++ V++S E L K+ +R R PE GDKF+SRHGQKGVIG
Sbjct: 316 SQRRDTSVTIRHGEEGVVDLVILSETKEGNRLGKVRVRDLRVPEFGDKFASRHGQKGVIG 375
Query: 1240 LIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTK 1299
L+V QED+PF E G+ PD+I+NPH PSRMT+G+++E++ GK G +E +GT F G
Sbjct: 376 LVVPQEDLPFTEDGVIPDLIINPHAIPSRMTIGQVLEMIGGKVGSLECRRVDGTIFSGEG 435
Query: 1300 LVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPR 1359
++ L +G+ + GK+ Y G TG LE I+ G YYQKL H+V KIHARSRGP
Sbjct: 436 EWALRHALENYGFTHSGKETMYDGKTGRKLECEIFVGVAYYQKLHHLVAGKIHARSRGPI 495
Query: 1360 VVLTRQPTGRRWK 1372
VLTRQPT R +
Sbjct: 496 QVLTRQPTEGRAR 508
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 68/132 (51%), Gaps = 15/132 (11%)
Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKR 751
F+ + G IE+LD E ++ IA+ I TH+EI P +LG+ AG+
Sbjct: 89 FEYLVKTGVIEFLDAEEEENARIAMYNDEI-TFENTHVEIDPLVILGIGAGV-------- 139
Query: 752 FHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTI 811
PYP HN APR T AMGKQ++G N + R+DT + L Y Q P+V +K
Sbjct: 140 ------APYPEHNSAPRITMAAAMGKQSLGIPMANIKWRMDTRGHLLHYPQVPLVRTKHQ 193
Query: 812 RITNFHKLPAGK 823
I F K PAG+
Sbjct: 194 EILGFDKRPAGQ 205
>sp|Q8SR75|RPB2_ENCCU DNA-directed RNA polymerase II subunit RPB2 OS=Encephalitozoon
cuniculi (strain GB-M1) GN=RPB2 PE=3 SV=1
Length = 1141
Score = 202 bits (514), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 103/261 (39%), Positives = 152/261 (58%), Gaps = 3/261 (1%)
Query: 915 VPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFH 974
+P+P HNQ+PRNTYQ AMGKQAMG N R+DTL L Y Q+P+V +K++ F
Sbjct: 682 IPFPDHNQSPRNTYQSAMGKQAMGIYATNFLLRMDTLSNILFYPQKPLVTTKSMEYLRFK 741
Query: 975 KLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRIL 1034
+LP+GQNA +A+ YSGY+ ED++IMN++++DRG R YR ++
Sbjct: 742 ELPSGQNALVAIACYSGYNQEDSIIMNQSAIDRGLFRSFFYRTYTDQESMSRPGVNEEFC 801
Query: 1035 GPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATP--EYKE 1092
P A R + LD DG+++PG ++ VL+ K P + + P YK+
Sbjct: 802 KPSRGAVLRMKNLNYNKLDDDGLISPGTRVTGDDVLIGKITPILDPERSTKEAPVYVYKD 861
Query: 1093 VPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQ 1152
+ + + ++ V+V +N + K+ +R R P++GDKF+SRH QKG IG+ + Q
Sbjct: 862 SSTAMRRTETGIVDTVIV-TNKDGYKFSKVKVRSGRIPQMGDKFASRHAQKGTIGITLRQ 920
Query: 1153 EDMPFNESGICPDIIMNPHGL 1173
EDMPF GI PDII+NPH +
Sbjct: 921 EDMPFTSEGIVPDIIINPHAI 941
Score = 183 bits (464), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 87/191 (45%), Positives = 121/191 (63%), Gaps = 1/191 (0%)
Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
YK+ + + + ++ V+V+ N + K+ +R R P++GDKF+SRH QKG IG+
Sbjct: 859 YKDSSTAMRRTETGIVDTVIVT-NKDGYKFSKVKVRSGRIPQMGDKFASRHAQKGTIGIT 917
Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
+ QEDMPF GI PDII+NPH PSRMT+G LIE L GK M G + T F G +
Sbjct: 918 LRQEDMPFTSEGIVPDIIINPHAIPSRMTIGHLIECLLGKVSAMSGEEGDATPFSGVTVD 977
Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
+ L +G+ +G ++ Y+G+TG L A ++ GP YYQ+LKHMV DKIHAR+RGP +
Sbjct: 978 GISSRLKSYGFQQRGLEVMYNGMTGRKLRAQMFFGPTYYQRLKHMVDDKIHARARGPLQI 1037
Query: 1362 LTRQPTGRRWK 1372
LTRQP R +
Sbjct: 1038 LTRQPVEGRSR 1048
Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 92/151 (60%), Gaps = 3/151 (1%)
Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINS 243
+F+I ++ IT A+ TGNW + M+ R GV QVL+R +++S L + R+N+
Sbjct: 400 EFNIALGLKASIITQGFRYALATGNWGDQAKAMQTRAGVAQVLNRYNFVSTLSHLRRVNT 459
Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
EK K++ PR L + WGM+CP++TPEG+ACGLVKNL+LM +I+ + +++ +
Sbjct: 460 PIEKEGKLAAPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMAYISVGSSSGPLVEFLEE 519
Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
G+E + + +L + +FVNG+ GI
Sbjct: 520 CGVESLEEISTSQLDA--ATKIFVNGVWVGI 548
Score = 98.2 bits (243), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 80/145 (55%), Gaps = 23/145 (15%)
Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVS------ESGIRPGVT---THLEIAPFTLLG 738
G ++D+ + G IE+LDV E S IA++ ES V+ TH EI P +LG
Sbjct: 617 GEIKWDNLVTSGFIEFLDVEEEEMSMIAMNTKILADESRNSSDVSVSYTHCEIHPALILG 676
Query: 739 VCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNL 798
+CA +P+P HNQ+PRNTYQ AMGKQAMG N R+DTL L
Sbjct: 677 ICAST--------------IPFPDHNQSPRNTYQSAMGKQAMGIYATNFLLRMDTLSNIL 722
Query: 799 VYAQRPMVESKTIRITNFHKLPAGK 823
Y Q+P+V +K++ F +LP+G+
Sbjct: 723 FYPQKPLVTTKSMEYLRFKELPSGQ 747
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 42/73 (57%)
Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
A+D L+ + HI KA ++ +++R++L DDRD+YG KR++L+G
Sbjct: 311 AKDLLAKEVLPHIGTQEFCETKKAYFIGYIVQRLLLVALGRRNPDDRDHYGKKRMDLSGP 370
Query: 516 LLSLMFEDVFKRF 528
LL+ +F +FK+
Sbjct: 371 LLASLFRTLFKKL 383
Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 341 VCKPEI-EESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVV-----RSDLVIGR 394
V KP + ES T P+E R+RDLTY++P+ +D+ S+ V S + G
Sbjct: 74 VSKPPVYTESDGRTITVFPNEARIRDLTYASPLFIDVTKETLSELGVVDKHKYSRVPFGS 133
Query: 395 MPIMLQSSKCVL 406
+P+ML+SS CVL
Sbjct: 134 LPVMLRSSYCVL 145
Score = 38.5 bits (88), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 28/45 (62%)
Query: 116 WKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDP 160
W ++ SF ++KGLV+ +DSFD F+ ++++++ + I P
Sbjct: 11 WSIISSFFEQKGLVRQQLDSFDQFVKTKMQEVINESPVIIVQSAP 55
>sp|Q54J75|RPB2_DICDI DNA-directed RNA polymerase II subunit rpb2 OS=Dictyostelium
discoideum GN=polr2b PE=3 SV=1
Length = 1170
Score = 201 bits (512), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 105/266 (39%), Positives = 164/266 (61%), Gaps = 9/266 (3%)
Query: 914 LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
++P+P HNQ+PRNTYQ AMGKQAMG N Q R+DT+ + L Y Q+P+V ++++ +F
Sbjct: 706 IIPFPDHNQSPRNTYQAAMGKQAMGVYITNYQLRMDTMAHVLFYPQKPLVTTRSMEYLHF 765
Query: 974 HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
+LPAGQN +A+ YSGY+ ED++I+N++++DRG R + YR K K+ + +
Sbjct: 766 RELPAGQNVCVAIACYSGYNQEDSVILNQSAIDRGLFRSMFYRAYKDEQKKQTSLMEEVF 825
Query: 1034 LGPLLEADTRKPVYRH---RALDQDGIVAPGEQICERQVLVNKSMPT-ISVSAISMATPE 1089
P E DT + RH +D DG+VAPG ++ +++ K+ P S + T
Sbjct: 826 EKP--ERDTCAGM-RHGSYEKIDDDGLVAPGVRVAGDDIIIGKTTPLPPSDDDLGPKTRR 882
Query: 1090 Y--KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
+ ++ + + S +++V+++++ E K+ +R R P+IGDKFSSRHGQKG G
Sbjct: 883 HTKRDSSTALRSSETGIVDQVILTTSGEGFKFCKVRVRSMRVPQIGDKFSSRHGQKGTCG 942
Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
+ QED+PF GI PDII+NPH +
Sbjct: 943 MAYRQEDLPFTVEGIVPDIIVNPHAI 968
Score = 181 bits (458), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 85/190 (44%), Positives = 121/190 (63%)
Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
++ + + S +++V+++++ E K+ +R R P+IGDKFSSRHGQKG G+
Sbjct: 886 RDSSTALRSSETGIVDQVILTTSGEGFKFCKVRVRSMRVPQIGDKFSSRHGQKGTCGMAY 945
Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
QED+PF GI PDII+NPH PSRMT+G+LIE L GK G+ + T F +
Sbjct: 946 RQEDLPFTVEGIVPDIIVNPHAIPSRMTIGQLIECLLGKVSASTGDEGDATPFTDVTVEA 1005
Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
+ + L + GY G ++ Y+G TG ++A I+ GP YYQ+LKHMV DKIH+RSRGP +L
Sbjct: 1006 ISQALHKIGYQMTGHEVMYNGHTGRRMDAQIFIGPTYYQRLKHMVDDKIHSRSRGPVQIL 1065
Query: 1363 TRQPTGRRWK 1372
TRQP R +
Sbjct: 1066 TRQPVEGRSR 1075
Score = 111 bits (277), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 58/159 (36%), Positives = 97/159 (61%), Gaps = 5/159 (3%)
Query: 182 KAAQFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRI 241
K +F + ++ TIT+ L ++ TGNW + + GV QVL+RL++ S L + R+
Sbjct: 423 KDKEFIASSAVKSKTITSGLKYSLATGNWGSSKSGGTKSGVAQVLNRLTFASTLSHLRRL 482
Query: 242 NSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIM 301
N+ + K++ PR L + WG++CPS+TPEG+ACGLVKNLA+M++I+ + + +L+ +
Sbjct: 483 NTPIGREGKLAKPRQLHNTHWGIVCPSETPEGQACGLVKNLAMMSYISVGSASQPILEFL 542
Query: 302 YNIGIEHIAMFNGEELSSP-GVYLVFVNGILAGITCHHK 339
E++ + +LSS +FVNG+ GI HH+
Sbjct: 543 EEWTTENLEEIS--DLSSIFSATKIFVNGMWVGI--HHQ 577
Score = 104 bits (259), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 78/140 (55%), Gaps = 21/140 (15%)
Query: 691 RFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRP-------GVTTHLEIAPFTLLGVCAGI 743
++ D L EG +EY+D E IA++ + P TH EI P +LG+C I
Sbjct: 647 KWQDLLSEGIVEYIDAEEEETVLIAMTPEDLVPMPNEQIVHTYTHCEIHPSMILGICCSI 706
Query: 744 ELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQR 803
+P+P HNQ+PRNTYQ AMGKQAMG N Q R+DT+ + L Y Q+
Sbjct: 707 --------------IPFPDHNQSPRNTYQAAMGKQAMGVYITNYQLRMDTMAHVLFYPQK 752
Query: 804 PMVESKTIRITNFHKLPAGK 823
P+V ++++ +F +LPAG+
Sbjct: 753 PLVTTRSMEYLHFRELPAGQ 772
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%)
Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
AR+ L + H+ V KA Y + R++LA + LDDRD++ NKRL+LAG
Sbjct: 337 AREVLQKEMLPHVSVAEFYETKKAFYFGYITHRLLLASLERRPLDDRDHFANKRLDLAGP 396
Query: 516 LLSLMFEDVFKRFNSELK 533
LL +F +FK+ +++
Sbjct: 397 LLGTLFRQLFKKLTKDVR 414
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 62/117 (52%), Gaps = 21/117 (17%)
Query: 353 TRQTTPHECRLRDLTYSAPITVDIEYT-------RGSQRVVRSDLV-----IGRMPIMLQ 400
++Q TP++ R+R+LTYSAP+ VDI T +G +R R+D V IG++PIML+
Sbjct: 104 SQQVTPNQARIRNLTYSAPLFVDITKTVMTGSKSKGDER--RTDEVLKRIFIGKVPIMLR 161
Query: 401 SSKCVL-----RNKTEYTSSSRRASTSSVTMHSQRTSPLLSCKKLRQKRFQTYKKTP 452
S C+L R+ T S + S++ L++ +K+ +KK+P
Sbjct: 162 SQYCMLNEADDRDLTTMGECSFDQGGYFIINGSEKV--LIAQEKMNNNHVYVFKKSP 216
Score = 37.7 bits (86), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 27/41 (65%)
Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANI 154
D W ++ ++ +EKGLV+ +DSFD FI +++++ + I
Sbjct: 22 DVWTVISAYFQEKGLVRQQLDSFDEFIQNTMQEIIDESPPI 62
>sp|Q753Q4|RPB2_ASHGO DNA-directed RNA polymerase II subunit RPB2 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=RPB2 PE=3 SV=1
Length = 1222
Score = 201 bits (511), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 100/267 (37%), Positives = 157/267 (58%), Gaps = 5/267 (1%)
Query: 911 SPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRI 970
+ ++P+P HNQ+PRNTYQ AMGKQAMG N R+DT+ L Y Q+P+ ++ +
Sbjct: 750 AASVIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMDTMANILYYPQKPLGTTRAMEY 809
Query: 971 TNFHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTH 1030
F +LPAGQNA +A+ YSGY+ ED++IMN++S+D G R L +R+ K+
Sbjct: 810 LKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDSGLFRSLFFRSYMDQEKRIGMSIT 869
Query: 1031 DRILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISM----A 1086
+ P R + LD DG++APG ++ +++ K+ P I A + A
Sbjct: 870 ESFEKPHRTNTLRMKHGTYEKLDDDGLIAPGVRVSGDDIIIGKTTP-IPPDAEELGQRTA 928
Query: 1087 TPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVI 1146
++ + + +++VL+++N E +K+ +R T+ P+IGDKF+SRHGQKG I
Sbjct: 929 FHSKRDASTPLRSTENGIVDQVLITTNQEGLKFVKVRVRTTKVPQIGDKFASRHGQKGTI 988
Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGL 1173
G+ +EDMPF G+ PD+I+NPH +
Sbjct: 989 GITYRREDMPFTAEGVVPDLIINPHAI 1015
Score = 184 bits (467), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 85/174 (48%), Positives = 117/174 (67%)
Query: 1197 LEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICP 1256
+++VL+++N E +K+ +R T+ P+IGDKF+SRHGQKG IG+ +EDMPF G+ P
Sbjct: 947 VDQVLITTNQEGLKFVKVRVRTTKVPQIGDKFASRHGQKGTIGITYRREDMPFTAEGVVP 1006
Query: 1257 DIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQG 1316
D+I+NPH PSRMTV LIE L K + GN + + F + + + L HGY +G
Sbjct: 1007 DLIINPHAIPSRMTVAHLIECLLSKVAALSGNEGDASPFTDITVDGISKLLREHGYQSRG 1066
Query: 1317 KDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRR 1370
++ Y+G TG+ L A I+ GP YYQ+L+HMV DKIHAR+RGP VLTRQP R
Sbjct: 1067 FEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGR 1120
Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 92/154 (59%), Gaps = 3/154 (1%)
Query: 182 KAAQFDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTR 240
+A F++ ++ TIT L A+ TGNW ++ M R GV+QVL+R +Y S L + R
Sbjct: 433 EAKDFNLKLAVKATTITAGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRR 492
Query: 241 INSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKI 300
N+ + K++ PR L + WG++CP++TPEG+ACGLVKNL+LM+ I+ D ++
Sbjct: 493 TNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPVPIITF 552
Query: 301 MYNIGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
+ G+E + + + SP VFVNG+ GI
Sbjct: 553 LNEWGMEPLEDYVPHQ--SPDATRVFVNGVWHGI 584
Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 72/156 (46%), Gaps = 38/156 (24%)
Query: 695 FLYEGKIEYLDVNEGNDSHIAVSESGIRPGVT------------------------THLE 730
L +G +EY+D E IA+ + + P V TH E
Sbjct: 681 LLNDGIVEYIDAEEEETILIAMQQEDLDPSVPQTVDPSDELDPARRIKAIHHSNTFTHCE 740
Query: 731 IAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNR 790
I P +LGV A + +P+P HNQ+PRNTYQ AMGKQAMG N R
Sbjct: 741 IHPSMILGVAASV--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVR 786
Query: 791 IDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
+DT+ L Y Q+P+ ++ + F +LPAG+ I
Sbjct: 787 MDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAI 822
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 59/121 (48%), Gaps = 14/121 (11%)
Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
K+ + A+D L + HI + KA +L MI R++L D DDRD++G K
Sbjct: 340 KEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKK 399
Query: 509 RLELAGSLLSLMFEDVFKRFN-----------SELKETNLSGVV---NLVSGWWFELKYG 554
RL+LAG LL+ +F+ +F++ E K+ NL V + +G + L G
Sbjct: 400 RLDLAGPLLAQLFKTLFRKLTRDILRFMQRSVEEAKDFNLKLAVKATTITAGLKYALATG 459
Query: 555 N 555
N
Sbjct: 460 N 460
Score = 42.4 bits (98), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 18/89 (20%)
Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIE------------------YTRGS 382
+ KP + ES + P E RLR+LTY++ + V+I+ S
Sbjct: 93 LAKPSMTESDGVSHAMYPQEARLRNLTYASGLFVEIKKRTYEAVDIPGRDLKYEIIQEES 152
Query: 383 QRVVRSDLVIGRMPIMLQSSKCVLRNKTE 411
+ + IGR+PIML+S C+L + +E
Sbjct: 153 EDTEEGKIFIGRVPIMLRSKYCLLDDLSE 181
Score = 42.4 bits (98), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 8/64 (12%)
Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGI 173
D W ++ +F +EKGLV +DSF+ FIN I+ L+ ++ + L+ L H
Sbjct: 25 DSWTVISAFFREKGLVSQQLDSFNQFINYTIQDLILEDSTL--------ILEQLAQHTTE 76
Query: 174 ADKI 177
AD I
Sbjct: 77 ADNI 80
>sp|Q8CFI7|RPB2_MOUSE DNA-directed RNA polymerase II subunit RPB2 OS=Mus musculus GN=Polr2b
PE=2 SV=2
Length = 1174
Score = 199 bits (505), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 107/269 (39%), Positives = 165/269 (61%), Gaps = 15/269 (5%)
Query: 914 LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
++P+P HNQ+PRNTYQ AMGKQAMG N R+DTL + L Y Q+P+V ++++ F
Sbjct: 710 IIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRF 769
Query: 974 HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
+LPAG N+ +A+ SY+GY+ ED++IMN++++DRGF R + YR+ K +Q + D+
Sbjct: 770 RELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYK---EQESKKGFDQ- 825
Query: 1034 LGPLLEADTRKPV--YRH---RALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATP 1088
+ E TR+ RH LD DG++APG ++ V++ K++ T+ + + +
Sbjct: 826 -EEVFEKPTRETCQGMRHAIYEKLDDDGLIAPGVRVSGDDVIIGKTV-TLPENEDELEST 883
Query: 1089 EY----KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKG 1144
++ + S +++V+V+ N E K+ +R R P+IGDKF+SRHGQKG
Sbjct: 884 NRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKG 943
Query: 1145 VIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
G+ QEDMPF GI PDII+NPH +
Sbjct: 944 TCGIQYRQEDMPFTCEGITPDIIINPHAI 972
Score = 175 bits (444), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 91/225 (40%), Positives = 131/225 (58%), Gaps = 4/225 (1%)
Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNS 1206
G+ V +D+ ++ P+ N L+ +R ++ + S +++V+V+ N
Sbjct: 857 GVRVSGDDVIIGKTVTLPE---NEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQ 913
Query: 1207 EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYP 1266
E K+ +R R P+IGDKF+SRHGQKG G+ QEDMPF GI PDII+NPH P
Sbjct: 914 EGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIP 973
Query: 1267 SRMTVGKLIELLAGKAGLMEGNYKEGTAFG-GTKLVDVQEELIRHGYNYQGKDIFYSGIT 1325
SRMT+G LIE L GK +G + T F + + L +GY+ +G ++ Y+G T
Sbjct: 974 SRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFT 1033
Query: 1326 GEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRR 1370
G + + I+ GP YYQ+LKHMV DKIH+R+RGP +L RQP R
Sbjct: 1034 GRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGR 1078
Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 94/163 (57%), Gaps = 12/163 (7%)
Query: 182 KAAQFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTR 240
+ F++ ++ I++ L ++ TGNW ++ R GV+QVL+RL++ S L + R
Sbjct: 425 RGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRR 484
Query: 241 INSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKI 300
+NS + K++ PR L + WGM+CP++TPEG A GLVKNLALM +I+ + +L+
Sbjct: 485 LNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEF 544
Query: 301 MYNIGIEHIAMFNGEELSSPGVY---LVFVNGILAGITCHHKE 340
+ E +M N EE+S + +FVNG GI HK+
Sbjct: 545 L-----EEWSMENLEEISPAAIADATKIFVNGCWVGI---HKD 579
Score = 97.1 bits (240), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 74/137 (54%), Gaps = 20/137 (14%)
Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRP------GVTTHLEIAPFTLLGVCAGIEL 745
+ D + G +EY+D E +A++ ++ TH EI P +LGVCA I
Sbjct: 653 WQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASI-- 710
Query: 746 LQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPM 805
+P+P HNQ+PRNTYQ AMGKQAMG N R+DTL + L Y Q+P+
Sbjct: 711 ------------IPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPL 758
Query: 806 VESKTIRITNFHKLPAG 822
V ++++ F +LPAG
Sbjct: 759 VTTRSMEYLRFRELPAG 775
Score = 65.1 bits (157), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 64/126 (50%), Gaps = 4/126 (3%)
Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
K+ + A++ L + H+ V + KA +L M+ R++LA LDDRD+YGNK
Sbjct: 332 KEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNK 391
Query: 509 RLELAGSLLSLMFEDVFKRFNSELKETNLSGVVNLVSGWWFELKYGNKIYIRSPSRKL-L 567
RL+LAG LL+ +F +FK LKE + + G F L+ K I S K L
Sbjct: 392 RLDLAGPLLAFLFRGMFKNL---LKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSL 448
Query: 568 AAGFSG 573
A G G
Sbjct: 449 ATGNWG 454
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 5/59 (8%)
Query: 358 PHECRLRDLTYSAPITVDIEYT---RGSQRV--VRSDLVIGRMPIMLQSSKCVLRNKTE 411
P+E RLR+LTYSAP+ VDI T G +++ IG++PIML+S+ C+L T+
Sbjct: 110 PNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTD 168
Score = 38.5 bits (88), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 25/34 (73%)
Query: 116 WKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQ 149
W ++ S+ EKGLV+ +DSFD FI + ++++++
Sbjct: 27 WIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE 60
>sp|P30876|RPB2_HUMAN DNA-directed RNA polymerase II subunit RPB2 OS=Homo sapiens GN=POLR2B
PE=1 SV=1
Length = 1174
Score = 198 bits (504), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 107/269 (39%), Positives = 165/269 (61%), Gaps = 15/269 (5%)
Query: 914 LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
++P+P HNQ+PRNTYQ AMGKQAMG N R+DTL + L Y Q+P+V ++++ F
Sbjct: 710 IIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRF 769
Query: 974 HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
+LPAG N+ +A+ SY+GY+ ED++IMN++++DRGF R + YR+ K +Q + D+
Sbjct: 770 RELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYK---EQESKKGFDQ- 825
Query: 1034 LGPLLEADTRKPV--YRHR---ALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATP 1088
+ E TR+ RH LD DG++APG ++ V++ K++ T+ + + +
Sbjct: 826 -EEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTV-TLPENEDELEST 883
Query: 1089 EY----KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKG 1144
++ + S +++V+V+ N E K+ +R R P+IGDKF+SRHGQKG
Sbjct: 884 NRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKG 943
Query: 1145 VIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
G+ QEDMPF GI PDII+NPH +
Sbjct: 944 TCGIQYRQEDMPFTCEGITPDIIINPHAI 972
Score = 175 bits (444), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 91/225 (40%), Positives = 131/225 (58%), Gaps = 4/225 (1%)
Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNS 1206
G+ V +D+ ++ P+ N L+ +R ++ + S +++V+V+ N
Sbjct: 857 GVRVSGDDVIIGKTVTLPE---NEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQ 913
Query: 1207 EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYP 1266
E K+ +R R P+IGDKF+SRHGQKG G+ QEDMPF GI PDII+NPH P
Sbjct: 914 EGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIP 973
Query: 1267 SRMTVGKLIELLAGKAGLMEGNYKEGTAFG-GTKLVDVQEELIRHGYNYQGKDIFYSGIT 1325
SRMT+G LIE L GK +G + T F + + L +GY+ +G ++ Y+G T
Sbjct: 974 SRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFT 1033
Query: 1326 GEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRR 1370
G + + I+ GP YYQ+LKHMV DKIH+R+RGP +L RQP R
Sbjct: 1034 GRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGR 1078
Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 94/163 (57%), Gaps = 12/163 (7%)
Query: 182 KAAQFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTR 240
+ F++ ++ I++ L ++ TGNW ++ R GV+QVL+RL++ S L + R
Sbjct: 425 RGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRR 484
Query: 241 INSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKI 300
+NS + K++ PR L + WGM+CP++TPEG A GLVKNLALM +I+ + +L+
Sbjct: 485 LNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEF 544
Query: 301 MYNIGIEHIAMFNGEELSSPGVY---LVFVNGILAGITCHHKE 340
+ E +M N EE+S + +FVNG GI HK+
Sbjct: 545 L-----EEWSMENLEEISPAAIADATKIFVNGCWVGI---HKD 579
Score = 97.1 bits (240), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 74/137 (54%), Gaps = 20/137 (14%)
Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRP------GVTTHLEIAPFTLLGVCAGIEL 745
+ D + G +EY+D E +A++ ++ TH EI P +LGVCA I
Sbjct: 653 WQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASI-- 710
Query: 746 LQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPM 805
+P+P HNQ+PRNTYQ AMGKQAMG N R+DTL + L Y Q+P+
Sbjct: 711 ------------IPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPL 758
Query: 806 VESKTIRITNFHKLPAG 822
V ++++ F +LPAG
Sbjct: 759 VTTRSMEYLRFRELPAG 775
Score = 65.1 bits (157), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 64/126 (50%), Gaps = 4/126 (3%)
Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
K+ + A++ L + H+ V + KA +L M+ R++LA LDDRD+YGNK
Sbjct: 332 KEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNK 391
Query: 509 RLELAGSLLSLMFEDVFKRFNSELKETNLSGVVNLVSGWWFELKYGNKIYIRSPSRKL-L 567
RL+LAG LL+ +F +FK LKE + + G F L+ K I S K L
Sbjct: 392 RLDLAGPLLAFLFRGMFKNL---LKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSL 448
Query: 568 AAGFSG 573
A G G
Sbjct: 449 ATGNWG 454
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 5/59 (8%)
Query: 358 PHECRLRDLTYSAPITVDIEYT---RGSQRV--VRSDLVIGRMPIMLQSSKCVLRNKTE 411
P+E RLR+LTYSAP+ VDI T G +++ IG++PIML+S+ C+L T+
Sbjct: 110 PNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTD 168
Score = 38.5 bits (88), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 25/34 (73%)
Query: 116 WKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQ 149
W ++ S+ EKGLV+ +DSFD FI + ++++++
Sbjct: 27 WIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE 60
>sp|Q03587|RPOB_THEAC DNA-directed RNA polymerase subunit B OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=rpoB PE=3 SV=1
Length = 1195
Score = 197 bits (502), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 97/262 (37%), Positives = 155/262 (59%), Gaps = 2/262 (0%)
Query: 914 LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
++PYP HN +PR T AM KQ++G N + R DT + L Y Q P+V ++ + ++
Sbjct: 728 IIPYPEHNSSPRITIASAMAKQSLGFAQSNVRIRPDTRGHLLHYPQVPLVRTRVMDYIHY 787
Query: 974 HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
+ PAGQN +AV+SY GY+I+DAL++NKA+++RG GR +R ++YP D+
Sbjct: 788 DRRPAGQNFVVAVLSYEGYNIQDALVINKAAIERGLGRSTFFRTYSAEERRYPGGQEDKF 847
Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPT--ISVSAISMATPEYK 1091
P + + ++ LD GI+ P + VL+ K+ P + + +
Sbjct: 848 EIPTHDIIGARAEEYYKNLDDSGIIFPEAYVEGSDVLIGKTSPPRFLEEGEERLGPQRRR 907
Query: 1092 EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVE 1151
E V+ + + Y++ V ++ + ++ ++K+ +R R PE+GDKF+SRHGQKGV+GL+V
Sbjct: 908 ESSVTMRPNESGYVDNVFLTVSESNSRVVKIKVRSERIPELGDKFASRHGQKGVVGLVVP 967
Query: 1152 QEDMPFNESGICPDIIMNPHGL 1173
QEDMPF E GI PD+I NPH +
Sbjct: 968 QEDMPFTEDGIIPDLIFNPHSI 989
Score = 189 bits (481), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 87/190 (45%), Positives = 127/190 (66%)
Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
+E V+ + + Y++ V ++ + ++ ++K+ +R R PE+GDKF+SRHGQKGV+GL+V
Sbjct: 907 RESSVTMRPNESGYVDNVFLTVSESNSRVVKIKVRSERIPELGDKFASRHGQKGVVGLVV 966
Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
QEDMPF E GI PD+I NPH PSRMTVG ++E++ GK G + +GT F G
Sbjct: 967 PQEDMPFTEDGIIPDLIFNPHSIPSRMTVGHILEMIGGKIASRTGRFIDGTIFSGEPEKS 1026
Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
+++ L+++G+ ++ Y GITG +A I+ G +YYQKL HMV K HARSRGP +L
Sbjct: 1027 LRDALVKYGFRKSSTEVMYDGITGRRFKADIFVGVIYYQKLHHMVAGKFHARSRGPVQIL 1086
Query: 1363 TRQPTGRRWK 1372
TRQPT R +
Sbjct: 1087 TRQPTEGRSR 1096
Score = 90.5 bits (223), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 81/142 (57%), Gaps = 11/142 (7%)
Query: 192 MRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKV 251
+RQD +T + A+ TGNW R GV+Q+L R+S +S + + RI S +T+
Sbjct: 431 VRQDLLTQRVLHAMSTGNWI-----GGRTGVSQLLDRVSNLSTISHLRRIISPLTRTQPH 485
Query: 252 SGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAM 311
R L +QWG +CP++TPEG+ CGLVKN AL+ ++T D ++++I+ + + +
Sbjct: 486 FEARDLHPTQWGRICPNETPEGQNCGLVKNAALLINVTQGIDPDSVMEILKGMDVREVL- 544
Query: 312 FNGEELSSPGVYLVFVNGILAG 333
EE SP V++NG G
Sbjct: 545 ---EE--SPKKGRVYLNGDFIG 561
Score = 70.5 bits (171), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 73/174 (41%), Gaps = 56/174 (32%)
Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGI-------------------RPGVT------ 726
F+D + +G IE+LD E D+++AV I PG +
Sbjct: 635 FEDLVKQGAIEWLDAEEEEDTYVAVYAYDIPEKCPHCNSYLYRSMVDWVNPGESEITLEC 694
Query: 727 -----------------THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRN 769
THLEI P +LGV A I +PYP HN +PR
Sbjct: 695 GFCHQRFNVPSKLSKENTHLEIDPAMILGVVASI--------------IPYPEHNSSPRI 740
Query: 770 TYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
T AM KQ++G N + R DT + L Y Q P+V ++ + ++ + PAG+
Sbjct: 741 TIASAMAKQSLGFAQSNVRIRPDTRGHLLHYPQVPLVRTRVMDYIHYDRRPAGQ 794
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 38/66 (57%)
Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQ 400
+ KPEI+E+ + Q TP+E RLRDL Y AP+T+ + + +G +P+M++
Sbjct: 87 IGKPEIKEASGASNQITPNEARLRDLNYLAPVTLKLRIVEDGIEKGSEIIKVGDLPVMVR 146
Query: 401 SSKCVL 406
S C L
Sbjct: 147 SKICTL 152
Score = 39.7 bits (91), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 8/97 (8%)
Query: 442 QKRFQTYKKTPVDDAR--DFLSSTCIAHI---PVINMRFKMKAMYLAVMIRRMVLALSDP 496
+KRF + D + L + + H+ P +R KA+YL M R ++
Sbjct: 319 EKRFAAGQAKEFRDKKISQMLDHSLLPHLGDSPSDRIR---KAIYLGRMARSLLELSLGI 375
Query: 497 DMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
DD+D+ NKR++LAG L+ +F F+ +LK
Sbjct: 376 RKEDDKDHLANKRIKLAGDLMDELFRSAFQSVMKDLK 412
>sp|O28392|RPOB1_ARCFU DNA-directed RNA polymerase subunit B' OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=rpoB1 PE=4 SV=1
Length = 604
Score = 196 bits (497), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 101/264 (38%), Positives = 155/264 (58%), Gaps = 3/264 (1%)
Query: 913 GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
G +PY HN +PRNT AM KQ++G N R DT + + + Q P+V + T
Sbjct: 137 GSIPYAEHNASPRNTMGAAMIKQSLGIPYSNLAWRTDTRGHLMQHPQVPIVTTDTQVEIK 196
Query: 973 FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
F + PAGQN +AV+SY GY+IEDALIMNK S++RG GR YR + +YP D+
Sbjct: 197 FDERPAGQNFVVAVLSYEGYNIEDALIMNKGSVERGLGRSFFYRTYESEEMRYPGGQEDK 256
Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISV---SAISMATPE 1089
P + + + LD+DG++ P ++ VL+ ++ P + + + ++ +
Sbjct: 257 FEIPGADISGFRGAEAYAHLDEDGLIFPETEVGPDDVLIGRTSPPRFLEEPTELGISPQK 316
Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
+E V+ + + ++ V + + + L K+ +R R PE+GDKF+SRHGQKGV+GL+
Sbjct: 317 RRETSVTMRSNEKGVVDAVFLMQSEGGSKLAKVRVRDLRIPELGDKFASRHGQKGVVGLL 376
Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
V +EDMPF ESGI PD+I+NPH +
Sbjct: 377 VPEEDMPFTESGIVPDLIINPHAI 400
Score = 191 bits (485), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 92/190 (48%), Positives = 129/190 (67%)
Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
+E V+ + + ++ V + + + L K+ +R R PE+GDKF+SRHGQKGV+GL+V
Sbjct: 318 RETSVTMRSNEKGVVDAVFLMQSEGGSKLAKVRVRDLRIPELGDKFASRHGQKGVVGLLV 377
Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
+EDMPF ESGI PD+I+NPH PSRMTVG ++E++ GK G +EG +G+ F G D
Sbjct: 378 PEEDMPFTESGIVPDLIINPHAIPSRMTVGHVLEMIGGKVGSLEGRRVDGSLFHGESEED 437
Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
++ L ++G+++ GK++ Y GITG I+ G +YYQKL HMV KIHARSRGP VL
Sbjct: 438 LRATLKKYGFSHTGKEVMYDGITGRRYLVDIFVGVIYYQKLYHMVSSKIHARSRGPVQVL 497
Query: 1363 TRQPTGRRWK 1372
TRQPT R +
Sbjct: 498 TRQPTEGRAR 507
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 68/132 (51%), Gaps = 15/132 (11%)
Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKR 751
+D + +G IEYLD E ++++AV E + P THLE+ P ++G+C G
Sbjct: 88 IEDLVRQGLIEYLDAEEEENAYVAVYEHELTP-EHTHLELDPSLIVGICTGS-------- 138
Query: 752 FHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTI 811
+PY HN +PRNT AM KQ++G N R DT + + + Q P+V + T
Sbjct: 139 ------IPYAEHNASPRNTMGAAMIKQSLGIPYSNLAWRTDTRGHLMQHPQVPIVTTDTQ 192
Query: 812 RITNFHKLPAGK 823
F + PAG+
Sbjct: 193 VEIKFDERPAGQ 204
>sp|P0CX03|RPOB1_HALSA DNA-directed RNA polymerase subunit B' OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=rpoB1 PE=3
SV=1
Length = 608
Score = 190 bits (483), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 99/267 (37%), Positives = 151/267 (56%), Gaps = 8/267 (2%)
Query: 913 GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
G++PYP HN +PR T M KQ++G N + R DT + L Y Q+ MV ++T
Sbjct: 140 GMIPYPEHNASPRITMGAGMMKQSLGLPAANYRIRPDTRQHLLHYPQKAMVNTQTTEQIG 199
Query: 973 FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
+ PAGQN +AVMSY G++IEDAL+MNK S++R R +R + ++YP DR
Sbjct: 200 YDDRPAGQNFVVAVMSYEGFNIEDALVMNKGSVERALSRSHFFRTYEGEERRYPGGQEDR 259
Query: 1033 --ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAIS----MA 1086
I G + + Y H LD DG+V P ++ + VL+ K+ P + ++
Sbjct: 260 FEIPGDDVRGARGEDAYTH--LDDDGLVNPETKVDDSSVLLGKTSPPRFLEEPEDMGGLS 317
Query: 1087 TPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVI 1146
+ +E V+ + ++ V + + + L K+ +R R PE+GDKF+SRHGQKGV+
Sbjct: 318 PQKRRETSVTMRSGEDGVVDTVTLMEGEDGSKLAKVSVRDERIPELGDKFASRHGQKGVV 377
Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGL 1173
G + QEDMPF + G+ PD+++NPH L
Sbjct: 378 GHLAPQEDMPFTQEGVVPDLVLNPHAL 404
Score = 188 bits (477), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 86/190 (45%), Positives = 127/190 (66%)
Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
+E V+ + ++ V + + + L K+ +R R PE+GDKF+SRHGQKGV+G +
Sbjct: 322 RETSVTMRSGEDGVVDTVTLMEGEDGSKLAKVSVRDERIPELGDKFASRHGQKGVVGHLA 381
Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
QEDMPF + G+ PD+++NPH PSRMTVG ++E+L GKAG ++G +GT F G +
Sbjct: 382 PQEDMPFTQEGVVPDLVLNPHALPSRMTVGHVLEMLGGKAGSLDGRSVDGTPFTGEGEDE 441
Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
++ L G+ GK++ YSG++GE +EA I+ G ++Y KL HMV +K+HARS+GP VL
Sbjct: 442 IRGTLEDRGFKSSGKEVMYSGVSGEKIEAEIFVGTIFYHKLYHMVSNKLHARSKGPVQVL 501
Query: 1363 TRQPTGRRWK 1372
TRQPT R +
Sbjct: 502 TRQPTEGRAR 511
Score = 77.8 bits (190), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 65/132 (49%), Gaps = 15/132 (11%)
Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKR 751
F+D + GK+E++D E D + V E + THLEI P + G+ AG
Sbjct: 91 FEDLVEAGKVEFIDAEEEEDILVGVEEEELTTD-HTHLEIDPQLIFGIGAG--------- 140
Query: 752 FHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTI 811
++PYP HN +PR T M KQ++G N + R DT + L Y Q+ MV ++T
Sbjct: 141 -----MIPYPEHNASPRITMGAGMMKQSLGLPAANYRIRPDTRQHLLHYPQKAMVNTQTT 195
Query: 812 RITNFHKLPAGK 823
+ PAG+
Sbjct: 196 EQIGYDDRPAGQ 207
>sp|B0R8D5|RPOB1_HALS3 DNA-directed RNA polymerase subunit B' OS=Halobacterium salinarum
(strain ATCC 29341 / DSM 671 / R1) GN=rpoB1 PE=1 SV=1
Length = 608
Score = 190 bits (483), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 99/267 (37%), Positives = 151/267 (56%), Gaps = 8/267 (2%)
Query: 913 GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
G++PYP HN +PR T M KQ++G N + R DT + L Y Q+ MV ++T
Sbjct: 140 GMIPYPEHNASPRITMGAGMMKQSLGLPAANYRIRPDTRQHLLHYPQKAMVNTQTTEQIG 199
Query: 973 FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
+ PAGQN +AVMSY G++IEDAL+MNK S++R R +R + ++YP DR
Sbjct: 200 YDDRPAGQNFVVAVMSYEGFNIEDALVMNKGSVERALSRSHFFRTYEGEERRYPGGQEDR 259
Query: 1033 --ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAIS----MA 1086
I G + + Y H LD DG+V P ++ + VL+ K+ P + ++
Sbjct: 260 FEIPGDDVRGARGEDAYTH--LDDDGLVNPETKVDDSSVLLGKTSPPRFLEEPEDMGGLS 317
Query: 1087 TPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVI 1146
+ +E V+ + ++ V + + + L K+ +R R PE+GDKF+SRHGQKGV+
Sbjct: 318 PQKRRETSVTMRSGEDGVVDTVTLMEGEDGSKLAKVSVRDERIPELGDKFASRHGQKGVV 377
Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGL 1173
G + QEDMPF + G+ PD+++NPH L
Sbjct: 378 GHLAPQEDMPFTQEGVVPDLVLNPHAL 404
Score = 188 bits (477), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 86/190 (45%), Positives = 127/190 (66%)
Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
+E V+ + ++ V + + + L K+ +R R PE+GDKF+SRHGQKGV+G +
Sbjct: 322 RETSVTMRSGEDGVVDTVTLMEGEDGSKLAKVSVRDERIPELGDKFASRHGQKGVVGHLA 381
Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
QEDMPF + G+ PD+++NPH PSRMTVG ++E+L GKAG ++G +GT F G +
Sbjct: 382 PQEDMPFTQEGVVPDLVLNPHALPSRMTVGHVLEMLGGKAGSLDGRSVDGTPFTGEGEDE 441
Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
++ L G+ GK++ YSG++GE +EA I+ G ++Y KL HMV +K+HARS+GP VL
Sbjct: 442 IRGTLEDRGFKSSGKEVMYSGVSGEKIEAEIFVGTIFYHKLYHMVSNKLHARSKGPVQVL 501
Query: 1363 TRQPTGRRWK 1372
TRQPT R +
Sbjct: 502 TRQPTEGRAR 511
Score = 77.8 bits (190), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 65/132 (49%), Gaps = 15/132 (11%)
Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKR 751
F+D + GK+E++D E D + V E + THLEI P + G+ AG
Sbjct: 91 FEDLVEAGKVEFIDAEEEEDILVGVEEEELTTD-HTHLEIDPQLIFGIGAG--------- 140
Query: 752 FHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTI 811
++PYP HN +PR T M KQ++G N + R DT + L Y Q+ MV ++T
Sbjct: 141 -----MIPYPEHNASPRITMGAGMMKQSLGLPAANYRIRPDTRQHLLHYPQKAMVNTQTT 195
Query: 812 RITNFHKLPAGK 823
+ PAG+
Sbjct: 196 EQIGYDDRPAGQ 207
>sp|P08266|RPB2_DROME DNA-directed RNA polymerase II subunit RPB2 OS=Drosophila
melanogaster GN=RpII140 PE=2 SV=2
Length = 1176
Score = 186 bits (473), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 97/264 (36%), Positives = 155/264 (58%), Gaps = 5/264 (1%)
Query: 914 LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
++P+P HNQ+PRNTYQ AMGKQAMG N R+DTL + L Y +P+V ++++ F
Sbjct: 712 IIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRSMEYLRF 771
Query: 974 HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
+LPAG N+ +A++ Y+GY+ ED++I+N ++++RGF R + YR+ K + +
Sbjct: 772 RELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSENKRVGDQEENF 831
Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNK--SMPTISVSAISMATPEY- 1090
P + LD DGI+APG ++ V++ K ++P + + T +
Sbjct: 832 EKPHRGTCQGMRNAHYDKLDDDGIIAPGIRVSGDDVVIGKTITLPE-NDDELDSNTKRFS 890
Query: 1091 -KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
++ + S +++V+++ NSE K+ +R R P+IGDKF+SRHGQKG G+
Sbjct: 891 KRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQ 950
Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
QEDM F G+ PDII+NPH +
Sbjct: 951 YRQEDMAFTCEGLAPDIIINPHAI 974
Score = 171 bits (434), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 94/234 (40%), Positives = 137/234 (58%), Gaps = 10/234 (4%)
Query: 1144 GVI--GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVL 1201
G+I G+ V +D+ ++ P+ N L + ++ + S +++V+
Sbjct: 854 GIIAPGIRVSGDDVVIGKTITLPE---NDDELDSNTKRFSKRDASTFLRNSETGIVDQVM 910
Query: 1202 VSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMN 1261
++ NSE K+ +R R P+IGDKF+SRHGQKG G+ QEDM F G+ PDII+N
Sbjct: 911 LTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMAFTCEGLAPDIIIN 970
Query: 1262 PHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQE---ELIRHGYNYQGKD 1318
PH PSRMT+G LIE L GK G +G + T F V+VQ+ L +GY+ +G +
Sbjct: 971 PHAIPSRMTIGHLIECLQGKLGSNKGEIGDATPFNDA--VNVQKISTFLQEYGYHLRGNE 1028
Query: 1319 IFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
+ Y+G TG + A ++ GP YYQ+LKHMV DKIH+R+RGP +L RQP R +
Sbjct: 1029 VMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRAR 1082
Score = 107 bits (268), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 58/157 (36%), Positives = 92/157 (58%), Gaps = 9/157 (5%)
Query: 182 KAAQFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTR 240
+ F++ ++ + IT+ L ++ TGNW ++ R GV+QVL+RL++ S L + R
Sbjct: 426 RGKDFNLELAIKTNIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRR 485
Query: 241 INSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKI 300
+NS + K++ PR L + WGMLCP++TPEG A GLVKNLALM +I+ + +L+
Sbjct: 486 VNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEF 545
Query: 301 MYNIGIEHIAMFNGEELSSPGVY---LVFVNGILAGI 334
+ E +M N EE++ + +FVNG GI
Sbjct: 546 L-----EEWSMENLEEIAPSAIADATKIFVNGCWVGI 577
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 70/131 (53%), Gaps = 21/131 (16%)
Query: 699 GKIEYLDVNEGNDSHIAVSESGIRPG-------VTTHLEIAPFTLLGVCAGIELLQYNKR 751
G +EY+D E IA+S ++ TH EI P +LGVCA I
Sbjct: 661 GVVEYIDTLEEETVMIAMSPYDLKQDKDYAYCTTYTHCEIHPAMILGVCASI-------- 712
Query: 752 FHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTI 811
+P+P HNQ+PRNTYQ AMGKQAMG N R+DTL + L Y +P+V ++++
Sbjct: 713 ------IPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRSM 766
Query: 812 RITNFHKLPAG 822
F +LPAG
Sbjct: 767 EYLRFRELPAG 777
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 47/78 (60%)
Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
A++ L + H+ V + KA +L M+ R++LA LDDRD+YGNKRL+LAG
Sbjct: 340 AKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYGNKRLDLAGP 399
Query: 516 LLSLMFEDVFKRFNSELK 533
LL+ +F +FK E++
Sbjct: 400 LLAFLFRGLFKNLMKEVR 417
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 5/59 (8%)
Query: 358 PHECRLRDLTYSAPITVDIEYTRGSQ-----RVVRSDLVIGRMPIMLQSSKCVLRNKTE 411
P+E RLR+LTYSAP+ VDI T+ + IG++PIML+S+ C+L T+
Sbjct: 111 PNEARLRNLTYSAPLYVDITKTKNVEGLDPVETQHQKTFIGKIPIMLRSTYCLLSQLTD 169
Score = 38.9 bits (89), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 11/67 (16%)
Query: 116 WKLVLSFLKEKGLVKPHIDSFDYFINVEIKKL--------MQANANIYS---DVDPLFYL 164
W ++ ++ EKGLV+ +DSFD FI + ++++ +QA A S + P F L
Sbjct: 28 WIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGEVETPPRFSL 87
Query: 165 KYLDIHV 171
K+ I++
Sbjct: 88 KFEQIYL 94
>sp|Q7T6X7|RPO2_MIMIV DNA-directed RNA polymerase subunit 2 OS=Acanthamoeba polyphaga
mimivirus GN=RPO2 PE=1 SV=2
Length = 1196
Score = 176 bits (447), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 87/190 (45%), Positives = 121/190 (63%), Gaps = 1/190 (0%)
Query: 1181 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1240
+YK+ YK +P ++KV+ N++ +IKM +R R P +GDKFSSR GQKG IG
Sbjct: 902 QYKDASSIYKSLIPGAVDKVITEVNNDGYPIIKMRIRSERIPNVGDKFSSRAGQKGTIGY 961
Query: 1241 IVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKL 1300
+ DM F++SG+ PDII+NP+ P RMT+G+LIE L GK ++G Y + T F L
Sbjct: 962 KAHRADMLFSKSGLIPDIIINPNCMPKRMTIGQLIECLLGKLCAVKGVYGDATPFTSVDL 1021
Query: 1301 VDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRV 1360
+ +EL+ GY G + Y+G+ G+ L I+ GP YYQ+LK MV DK H+R+RGP
Sbjct: 1022 NAINDELVAAGYEEWGNETMYNGMNGKKLPVKIFIGPTYYQRLKQMVGDKAHSRARGPTQ 1081
Query: 1361 VLTRQ-PTGR 1369
+LTRQ P GR
Sbjct: 1082 LLTRQAPEGR 1091
Score = 144 bits (364), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 85/262 (32%), Positives = 141/262 (53%), Gaps = 12/262 (4%)
Query: 915 VPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFH 974
+P+P HNQ+PR +Q +QAMG + + R D + Y L + Q P+V S+ + T H
Sbjct: 730 IPFPDHNQSPRGIFQYNQARQAMGLYISDYRERTD-ISYILYHPQIPLVTSRASKYTGTH 788
Query: 975 KLPAGQNATIAVMSYSGY-DIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
PAG+N+ +A+ SY+G + ED+L++N +++ +G+ R + ++K+ P + I
Sbjct: 789 IFPAGENSIVAIASYTGLMNQEDSLVINDSAIQKGYMRAQALKKYMEIIKKNPASSQTSI 848
Query: 1034 LGPLLEADTRKPVYRHRA----LDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPE 1089
++ D K A L ++G I + V++ P + +
Sbjct: 849 F---MKPDRNKVDNLRDANYDKLSEEGYAKVETVIRDGDVVIGVVNPKPTARE---DEKQ 902
Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
YK+ YK +P ++KV+ N++ +IKM +R R P +GDKFSSR GQKG IG
Sbjct: 903 YKDASSIYKSLIPGAVDKVITEVNNDGYPIIKMRIRSERIPNVGDKFSSRAGQKGTIGYK 962
Query: 1150 VEQEDMPFNESGICPDIIMNPH 1171
+ DM F++SG+ PDII+NP+
Sbjct: 963 AHRADMLFSKSGLIPDIIINPN 984
Score = 73.9 bits (180), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 85/153 (55%), Gaps = 10/153 (6%)
Query: 187 DIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQF- 245
+I+ H++ ++I L A+ TGN+ R+G++Q+L+R++++ L M R+ +
Sbjct: 432 NIIPHIKPNSIEQGLRQALSTGNFG----SQSRKGLSQMLNRMNHLHSLSYMRRVITPTV 487
Query: 246 -EKTRKVSGPRSLQGSQWGMLCPSDTPEGE-ACGLVKNLALMTHITTENDEKNMLKIMYN 303
T K++ PR L +Q+G +CP ++PEG+ GLVKN+A+M IT + + + Y
Sbjct: 488 DASTMKMTSPRHLHNTQYGSMCPLESPEGKPKTGLVKNMAMMEGITINMNSQIPIIESYL 547
Query: 304 IG-IEHIAMFNGEELSSPGVYLVFVNGILAGIT 335
IG I + N + L VF+NG G+T
Sbjct: 548 IGKITTLESANKKRLHQ--YVKVFLNGNWLGVT 578
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 50/100 (50%), Gaps = 15/100 (15%)
Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
TH EI P +LG L+ N +P+P HNQ+PR +Q +QAMG +
Sbjct: 713 THCEIHPCMILG------LISSN--------IPFPDHNQSPRGIFQYNQARQAMGLYISD 758
Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQI 826
+ R D + Y L + Q P+V S+ + T H PAG+ I
Sbjct: 759 YRERTD-ISYILYHPQIPLVTSRASKYTGTHIFPAGENSI 797
>sp|P28365|RPA2_EUPOC DNA-directed RNA polymerase I subunit RPA2 OS=Euplotes octocarinatus
GN=RPA2 PE=3 SV=2
Length = 1166
Score = 172 bits (436), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 99/268 (36%), Positives = 149/268 (55%), Gaps = 24/268 (8%)
Query: 917 YPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKL 976
+ +NQ+PRN YQC M KQ MG +N Q R D +Y L++ RP+V+++T + +
Sbjct: 677 FAEYNQSPRNMYQCQMAKQTMGTPYHNHQFRTDNKIYRLLFPHRPIVKTRTQVDFDIEEY 736
Query: 977 PAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHD----- 1031
P+G NA +AV+SY+GYD+EDA+I+NK+S +RGFG +VY++ L + +Q+
Sbjct: 737 PSGTNAVVAVISYTGYDLEDAMIINKSSYERGFGHGVVYKSYTHDLNESNSQSTRGIKSS 796
Query: 1032 ---RILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATP 1088
+ L + + D K + +D DG+ G Q+ K P + + T
Sbjct: 797 VRYKFLNNVSQKDKSK--IKLENIDPDGLPKIGSQL-------TKGKPELCI----FDTL 843
Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSE---DAFLIKMLLRQTRRPEIGDKFSSRHGQKGV 1145
+ +K S + +E V V N + D I +R +R P IGDKFSSRHGQKGV
Sbjct: 844 KRGAKLSKFKDSEKARIETVRVCGNDDKNPDNLSIGYTIRYSRIPVIGDKFSSRHGQKGV 903
Query: 1146 IGLIVEQEDMPFNESGICPDIIMNPHGL 1173
+ ++ Q DMPF E+GI PD+I+NPH
Sbjct: 904 LSVLWPQVDMPFTENGITPDLIINPHAF 931
Score = 169 bits (429), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 89/191 (46%), Positives = 119/191 (62%), Gaps = 7/191 (3%)
Query: 1189 YKGSVPSYLEKVLVSSNSE---DAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQE 1245
+K S + +E V V N + D I +R +R P IGDKFSSRHGQKGV+ ++ Q
Sbjct: 852 FKDSEKARIETVRVCGNDDKNPDNLSIGYTIRYSRIPVIGDKFSSRHGQKGVLSVLWPQV 911
Query: 1246 DMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDV-- 1303
DMPF E+GI PD+I+NPH +PSRMT+G LI+ +A K+G + G +K F D+
Sbjct: 912 DMPFTENGITPDLIINPHAFPSRMTMGMLIQSMAAKSGSLRGEFKTVETFQRYDDNDIVG 971
Query: 1304 --QEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
+EL+ G+NY G ++ YSGI G L+A I+ G VYYQ+L+HMV DK AR GP +
Sbjct: 972 HFGKELLDKGFNYHGNELMYSGIFGTPLKADIFIGVVYYQRLRHMVSDKSQARGTGPIDI 1031
Query: 1362 LTRQPTGRRWK 1372
LT QP R K
Sbjct: 1032 LTHQPVKGRKK 1042
Score = 71.2 bits (173), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 65/127 (51%), Gaps = 15/127 (11%)
Query: 696 LYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSP 755
L+ IE++ E + IA ++ I P TTH E+ P +L + A + +
Sbjct: 628 LHYNCIEWISPLEQMNLSIACTDEDITPE-TTHQELDPINILSIVASVGV---------- 676
Query: 756 GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 815
+ +NQ+PRN YQC M KQ MG +N Q R D +Y L++ RP+V+++T +
Sbjct: 677 ----FAEYNQSPRNMYQCQMAKQTMGTPYHNHQFRTDNKIYRLLFPHRPIVKTRTQVDFD 732
Query: 816 FHKLPAG 822
+ P+G
Sbjct: 733 IEEYPSG 739
Score = 42.7 bits (99), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 65/144 (45%), Gaps = 18/144 (12%)
Query: 169 IHVGIADKIIPKIKAAQFDIVNHMRQDTITNA------------LTAAIQTGNWTIRRFK 216
+H+ + ++ ++K FD + +D +TN + + TGN R
Sbjct: 381 LHINLRARLNKELKRHNFDPMKF--RDVLTNQKINCGIGLIGKRMENFLATGNLISRTNL 438
Query: 217 --MERQGVTQVLSRLSYISGLGMMTRIN-SQFEKTRKVSGPRSLQGSQWGMLCPSDTPEG 273
M+ G + +L+ I L I+ Q+ +K + R L WG +CP TP+G
Sbjct: 439 DLMQTSGFCIIGDKLNNIRFLSHFRSIHRGQYFAEQKTTSVRKLLPESWGFICPVHTPDG 498
Query: 274 EACGLVKNLALMTHITTENDEKNM 297
CGL+ +++ M+ + ++EK +
Sbjct: 499 APCGLLNHIS-MSCVPIGSEEKQI 521
>sp|Q9P7X8|RPA2_SCHPO Probable DNA-directed RNA polymerase I subunit RPA2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rpa2 PE=3 SV=2
Length = 1174
Score = 171 bits (432), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 93/191 (48%), Positives = 120/191 (62%), Gaps = 8/191 (4%)
Query: 1188 SYKGSVPSYLEKVLVSSNS---EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQ 1244
+Y G+ P ++++V + N + I + LR TR P IGDKFSSRHGQKG+
Sbjct: 859 TYHGTEPGFVDEVRLLGNDVGDSECQQIHVKLRITRSPIIGDKFSSRHGQKGICSQKWPT 918
Query: 1245 EDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAF----GGTKL 1300
DMPF ESG+ PDII+NPH +PSRMT+G IE LAGKAG G ++ T F T
Sbjct: 919 VDMPFTESGMQPDIIINPHAFPSRMTIGMFIESLAGKAGACHGLAQDSTPFIYSEQQTAA 978
Query: 1301 VDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRV 1360
E+L++ GYNY G + YSGITG+ ++A IY G VYYQ+L+HMV DK R+ GP
Sbjct: 979 DYFGEQLVKAGYNYHGNEPMYSGITGQEMKADIYIGVVYYQRLRHMVSDKFQVRTTGPIH 1038
Query: 1361 VLTRQPT-GRR 1370
LTRQP GR+
Sbjct: 1039 NLTRQPVKGRK 1049
Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 97/267 (36%), Positives = 136/267 (50%), Gaps = 22/267 (8%)
Query: 914 LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
+ P+ NQ+PRN YQC MGKQ MG G + R D +Y L Q P+V K
Sbjct: 688 MTPFSDFNQSPRNMYQCQMGKQTMGTPGTALRYRTDNKLYRLQTGQTPVVRPKLHNTYGL 747
Query: 974 HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQ----T 1029
P G NA +AV+SY+GYD+EDA+I+NK++ +RGFG VY+ L Q +
Sbjct: 748 DHYPNGTNAVVAVISYTGYDMEDAMILNKSAHERGFGYGTVYKGESFDLSQKRRRGEPVV 807
Query: 1030 HDRILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPE 1089
H P T + + + LD DG+ G ++ + +V + + I
Sbjct: 808 HHFGFAP---GSTPRREWLQK-LDADGLPFIGIKLEDGDPIVAYYDESTGQNFIE----- 858
Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSN---SEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVI 1146
+Y G+ P ++++V + N + I + LR TR P IGDKFSSRHGQKG+
Sbjct: 859 ------TYHGTEPGFVDEVRLLGNDVGDSECQQIHVKLRITRSPIIGDKFSSRHGQKGIC 912
Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGL 1173
DMPF ESG+ PDII+NPH
Sbjct: 913 SQKWPTVDMPFTESGMQPDIIINPHAF 939
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 54/124 (43%), Gaps = 14/124 (11%)
Query: 699 GKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLV 758
G+++ L E IA I P V+TH+E +P +L + A +
Sbjct: 644 GELDMLGPFEQVYMDIACFPKEIVPKVSTHVEYSPTNVLSIVAN--------------MT 689
Query: 759 PYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHK 818
P+ NQ+PRN YQC MGKQ MG G + R D +Y L Q P+V K
Sbjct: 690 PFSDFNQSPRNMYQCQMGKQTMGTPGTALRYRTDNKLYRLQTGQTPVVRPKLHNTYGLDH 749
Query: 819 LPAG 822
P G
Sbjct: 750 YPNG 753
Score = 43.5 bits (101), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 222 VTQVLSRLSYISGLGMMTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKN 281
V + L+ ++S M+ R F K + R L WG +CP TP+G CGL+ +
Sbjct: 463 VAEKLNFYRFLSHFRMVHR--GAFFAELKTTTVRKLLPEAWGFMCPVHTPDGSPCGLLNH 520
Query: 282 LALMTHITTE-NDEKNMLKIMYNIGIE 307
LA I T +D + ++ ++G++
Sbjct: 521 LARKCEIVTHPSDVSQIPSLLLSLGVD 547
>sp|Q75DS1|RPA2_ASHGO DNA-directed RNA polymerase I subunit RPA2 OS=Ashbya gossypii (strain
ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)
GN=RPA2 PE=3 SV=2
Length = 1196
Score = 170 bits (430), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 91/192 (47%), Positives = 119/192 (61%), Gaps = 9/192 (4%)
Query: 1188 SYKGSVPSYLEKVLVSSNSEDAF----LIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVE 1243
+Y S P+Y+E+V + + + F I + R R P+IGDKFSSRHGQKGV
Sbjct: 866 TYHSSEPAYIEEVTLIGDESNKFQELQYITIKYRIRRVPQIGDKFSSRHGQKGVCSRKWP 925
Query: 1244 QEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFG----GTK 1299
DMPF+E+GI PD+I+NPH +PSRMT+G +E LAGKAG + G ++ T + T
Sbjct: 926 TVDMPFSETGIQPDVIINPHAFPSRMTIGMFVESLAGKAGALHGIAQDATPWTFSEEDTP 985
Query: 1300 LVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPR 1359
++L++ GYNY G + YSG TGE L A IY G VYYQ+L+HMV DK RS GP
Sbjct: 986 ADYFGDQLLKAGYNYHGNEPMYSGATGEELRADIYIGVVYYQRLRHMVNDKFQVRSTGPV 1045
Query: 1360 VVLTRQPT-GRR 1370
LT QP GR+
Sbjct: 1046 NSLTMQPVKGRK 1057
Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 95/264 (35%), Positives = 135/264 (51%), Gaps = 16/264 (6%)
Query: 914 LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
L P+ NQ+PRN YQC MGKQ MG G +R D +Y L Q P+V++
Sbjct: 696 LTPFSDFNQSPRNMYQCQMGKQTMGTPGVALCHRSDNKLYRLQSGQTPIVKANLYDDYGM 755
Query: 974 HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
P G NA +AV+SY+GYD++DA+I+NK++ +RGF VY+ K L + D +
Sbjct: 756 DNFPNGTNAVVAVISYTGYDMDDAMIINKSADERGFSYGTVYKTEKIDLSLSRGRG-DPV 814
Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKEV 1093
P LD+DG+ G + E + T++ + I
Sbjct: 815 TQHFGFGTDEWPKEWLEKLDEDGLPIIGSYVEEGDPICAYFDDTLNKTKIK--------- 865
Query: 1094 PVSYKGSVPSYLEKVLVSSNSEDAF----LIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
+Y S P+Y+E+V + + + F I + R R P+IGDKFSSRHGQKGV
Sbjct: 866 --TYHSSEPAYIEEVTLIGDESNKFQELQYITIKYRIRRVPQIGDKFSSRHGQKGVCSRK 923
Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
DMPF+E+GI PD+I+NPH
Sbjct: 924 WPTVDMPFSETGIQPDVIINPHAF 947
Score = 64.7 bits (156), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 50/109 (45%), Gaps = 14/109 (12%)
Query: 714 IAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQC 773
IAV+ I+ V TH+E +P +L + A L P+ NQ+PRN YQC
Sbjct: 667 IAVTPEEIQNNVHTHVEFSPTNILSILAN--------------LTPFSDFNQSPRNMYQC 712
Query: 774 AMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAG 822
MGKQ MG G +R D +Y L Q P+V++ P G
Sbjct: 713 QMGKQTMGTPGVALCHRSDNKLYRLQSGQTPIVKANLYDDYGMDNFPNG 761
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 6/119 (5%)
Query: 222 VTQVLSRLSYISGLGMMTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKN 281
V + ++ +IS M+ R F K + R L WG LCP TP+G CGL+ +
Sbjct: 480 VAEKINFYRFISHFRMVHR--GSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNH 537
Query: 282 LALMTHI-TTENDEKNMLKIMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAGITCHHK 339
A I TT++D + ++Y++G+ A + P + V ++G + G H +
Sbjct: 538 FAHKCKISTTQSDVSKIPTLLYSLGVSPAAHVTA---AGPSLCCVQLDGKIVGWCSHEQ 593
>sp|O74633|RPA2_NEUCR DNA-directed RNA polymerase I subunit RPA2 OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 /
FGSC 987) GN=acr-2 PE=1 SV=2
Length = 1234
Score = 169 bits (429), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 94/203 (46%), Positives = 123/203 (60%), Gaps = 11/203 (5%)
Query: 1177 DRITEYKEVPVSYKGSVPSYLEKVLV---SSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
D +T Y+ YK S +++E+V V + +E + + LR R P IGDKFSSRHG
Sbjct: 882 DGVTHYER----YKDSEDAFVEEVRVIGADNGTEPLQTVSIKLRIPRSPVIGDKFSSRHG 937
Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGT 1293
QKGV+ DMPF+E+GI PD+I+NPH +PSRMT+G +E LAGKAG + G ++ T
Sbjct: 938 QKGVLSQKWPATDMPFSETGIQPDVIINPHAFPSRMTIGMFVESLAGKAGALHGLAQDST 997
Query: 1294 AFG----GTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQD 1349
F T +L++ GYNY G + YSGITGE +A IY G VYYQ+L+HMV D
Sbjct: 998 PFKFDEQNTAGDYFGHQLMKAGYNYHGNEPLYSGITGEEFQADIYIGVVYYQRLRHMVND 1057
Query: 1350 KIHARSRGPRVVLTRQPTGRRWK 1372
K R+ GP V T QP R K
Sbjct: 1058 KYQVRTTGPVVPTTGQPIKGRKK 1080
Score = 160 bits (405), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 99/277 (35%), Positives = 141/277 (50%), Gaps = 30/277 (10%)
Query: 914 LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
+ P+ NQ+PRN YQC MGKQ MG +R D MY L Q P+V + F
Sbjct: 706 MTPFSDFNQSPRNMYQCQMGKQTMGTPATALAHRTDNKMYRLQTGQTPVVRAPLHNTYGF 765
Query: 974 HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
P G NA +AV+SY+GYD++DA+I+NK++ +RGFG +Y+ K LK + + R
Sbjct: 766 DNFPNGMNAVVAVISYTGYDMDDAMILNKSAHERGFGHGSIYKTKKVSLK---DDSRTRS 822
Query: 1034 LGPLLEADTRKPVYRHRA-----LDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATP 1088
+++ P R LD DG+ G + E V + A +
Sbjct: 823 AKSIVKMFGFAPNSTIRESTRDMLDNDGLPRVGRLLREGDV----------ICAWHTVSA 872
Query: 1089 EYKEVPVS---------YKGSVPSYLEKVLV---SSNSEDAFLIKMLLRQTRRPEIGDKF 1136
+Y V+ YK S +++E+V V + +E + + LR R P IGDKF
Sbjct: 873 DYNGQLVNRDGVTHYERYKDSEDAFVEEVRVIGADNGTEPLQTVSIKLRIPRSPVIGDKF 932
Query: 1137 SSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
SSRHGQKGV+ DMPF+E+GI PD+I+NPH
Sbjct: 933 SSRHGQKGVLSQKWPATDMPFSETGIQPDVIINPHAF 969
Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 49/109 (44%), Gaps = 14/109 (12%)
Query: 714 IAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQC 773
IA +E + PG +TH+E P +L + A + P+ NQ+PRN YQC
Sbjct: 677 IACTEQEVIPGDSTHVEFDPTNILSILAN--------------MTPFSDFNQSPRNMYQC 722
Query: 774 AMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAG 822
MGKQ MG +R D MY L Q P+V + F P G
Sbjct: 723 QMGKQTMGTPATALAHRTDNKMYRLQTGQTPVVRAPLHNTYGFDNFPNG 771
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 65/134 (48%), Gaps = 11/134 (8%)
Query: 222 VTQVLSRLSYISGLGMMTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKN 281
V + L+ L +IS M+ R F K + R L WG LCP TP+G CGL+ +
Sbjct: 493 VAEKLNFLRFISHFRMVHR--GSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNH 550
Query: 282 LALMTHITTEN-DEKNMLKIMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAGITCHHKE 340
LA I TE+ D + ++ + +G+ +I+ E +V ++G + G C +E
Sbjct: 551 LAHKCKIMTESVDASTISRLAFELGVVNISSAATSE-----SVVVMLDGRIVGW-CTPEE 604
Query: 341 VCKPEIEESFNYTR 354
CK I E+ Y +
Sbjct: 605 -CK-SIAETLRYWK 616
Score = 40.0 bits (92), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 36/71 (50%)
Query: 354 RQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKTEYT 413
R+ P ECR R ++Y ++ EY +G+MPIM++S+KC L+N +
Sbjct: 114 REIFPAECRERHVSYRGKLSATFEYRINDGEPHEFVRELGQMPIMVKSNKCHLQNNSPAQ 173
Query: 414 SSSRRASTSSV 424
+R+ + +
Sbjct: 174 LVARKEESEEL 184
>sp|P22138|RPA2_YEAST DNA-directed RNA polymerase I subunit RPA135 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPA135 PE=1
SV=1
Length = 1203
Score = 169 bits (428), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 92/192 (47%), Positives = 118/192 (61%), Gaps = 9/192 (4%)
Query: 1188 SYKGSVPSYLEKVLVSSNSEDAF----LIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVE 1243
+Y S P+Y+E+V + + + F + + R R P+IGDKFSSRHGQKGV
Sbjct: 873 TYHSSEPAYIEEVNLIGDESNKFQELQTVSIKYRIRRTPQIGDKFSSRHGQKGVCSRKWP 932
Query: 1244 QEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAF----GGTK 1299
DMPF+E+GI PDII+NPH +PSRMT+G +E LAGKAG + G ++ T + T
Sbjct: 933 TIDMPFSETGIQPDIIINPHAFPSRMTIGMFVESLAGKAGALHGIAQDSTPWIFNEDDTP 992
Query: 1300 LVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPR 1359
E+L + GYNY G + YSG TGE L A IY G VYYQ+L+HMV DK RS GP
Sbjct: 993 ADYFGEQLAKAGYNYHGNEPMYSGATGEELRADIYVGVVYYQRLRHMVNDKFQVRSTGPV 1052
Query: 1360 VVLTRQPT-GRR 1370
LT QP GR+
Sbjct: 1053 NSLTMQPVKGRK 1064
Score = 161 bits (408), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 97/264 (36%), Positives = 138/264 (52%), Gaps = 16/264 (6%)
Query: 914 LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
L P+ NQ+PRN YQC MGKQ MG G +R D +Y L Q P+V++
Sbjct: 703 LTPFSDFNQSPRNMYQCQMGKQTMGTPGVALCHRSDNKLYRLQTGQTPIVKANLYDDYGM 762
Query: 974 HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
P G NA +AV+SY+GYD++DA+I+NK++ +RGFG +Y+ K L N+ D I
Sbjct: 763 DNFPNGFNAVVAVISYTGYDMDDAMIINKSADERGFGYGTMYKTEKVDLALNRNRG-DPI 821
Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKEV 1093
+ P LD+DG+ G + E + T++ + I
Sbjct: 822 TQHFGFGNDEWPKEWLEKLDEDGLPYIGTYVEEGDPICAYFDDTLNKTKIK--------- 872
Query: 1094 PVSYKGSVPSYLEKVLVSSNSEDAF----LIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
+Y S P+Y+E+V + + + F + + R R P+IGDKFSSRHGQKGV
Sbjct: 873 --TYHSSEPAYIEEVNLIGDESNKFQELQTVSIKYRIRRTPQIGDKFSSRHGQKGVCSRK 930
Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
DMPF+E+GI PDII+NPH
Sbjct: 931 WPTIDMPFSETGIQPDIIINPHAF 954
Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 50/110 (45%), Gaps = 14/110 (12%)
Query: 713 HIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQ 772
+IAV+ I+ V TH+E P +L + A L P+ NQ+PRN YQ
Sbjct: 673 NIAVTPQEIQNNVHTHVEFTPTNILSILAN--------------LTPFSDFNQSPRNMYQ 718
Query: 773 CAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAG 822
C MGKQ MG G +R D +Y L Q P+V++ P G
Sbjct: 719 CQMGKQTMGTPGVALCHRSDNKLYRLQTGQTPIVKANLYDDYGMDNFPNG 768
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 6/119 (5%)
Query: 222 VTQVLSRLSYISGLGMMTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKN 281
V + ++ +IS M+ R F K + R L WG LCP TP+G CGL+ +
Sbjct: 487 VAEKINFYRFISHFRMVHR--GSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNH 544
Query: 282 LALMTHITT-ENDEKNMLKIMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAGITCHHK 339
A I+T ++D + I+Y++G +A + + P + V ++G + G H +
Sbjct: 545 FAHKCRISTQQSDVSRIPSILYSLG---VAPASHTFAAGPSLCCVQIDGKIIGWVSHEQ 600
>sp|P70700|RPA2_MOUSE DNA-directed RNA polymerase I subunit RPA2 OS=Mus musculus GN=Polr1b
PE=2 SV=2
Length = 1135
Score = 166 bits (421), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 99/263 (37%), Positives = 137/263 (52%), Gaps = 18/263 (6%)
Query: 914 LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
+P+ HNQ+PRN YQC MGKQ MG QNR D +Y L Q P+V +
Sbjct: 673 FIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQNRSDNKLYRLQTPQSPLVRPCMYDFYDM 732
Query: 974 HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
P G NA +AV+SY+GYD+EDA+I+NKAS +RGF VY++ L + Q D +
Sbjct: 733 DNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKFKQGEDNL 792
Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKEV 1093
+ + D R + LD DG+ G ++ S +++ T E
Sbjct: 793 VFGVKPGDPRV----MQKLDDDGLPFIGAKL---------EYGDPYYSYLNLNTGE--GF 837
Query: 1094 PVSYKGSVPSYLEKVLVSSNSEDAFLIKML---LRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
V YK ++ + V SN + K + +R R P IGDKF+SRHGQKG++ +
Sbjct: 838 VVYYKSKENCVVDNIKVCSNDMGSGKFKCICITVRIPRNPTIGDKFASRHGQKGILSRLW 897
Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
EDMPF ESG+ PDI+ NPHG
Sbjct: 898 PAEDMPFTESGMMPDILFNPHGF 920
Score = 162 bits (409), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 87/191 (45%), Positives = 114/191 (59%), Gaps = 7/191 (3%)
Query: 1187 VSYKGSVPSYLEKVLVSSNSEDAFLIKML---LRQTRRPEIGDKFSSRHGQKGVIGLIVE 1243
V YK ++ + V SN + K + +R R P IGDKF+SRHGQKG++ +
Sbjct: 839 VYYKSKENCVVDNIKVCSNDMGSGKFKCICITVRIPRNPTIGDKFASRHGQKGILSRLWP 898
Query: 1244 QEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAF----GGTK 1299
EDMPF ESG+ PDI+ NPHG+PSRMT+G LIE +AGK+ + G + T F +
Sbjct: 899 AEDMPFTESGMMPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSA 958
Query: 1300 LVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPR 1359
L E L GYN+ G + YSGI+G LEA I+ G VYYQ+L+HMV DK R+ G R
Sbjct: 959 LEYFGEMLKAAGYNFYGTERLYSGISGMELEADIFIGVVYYQRLRHMVSDKFQVRTTGAR 1018
Query: 1360 VVLTRQPTGRR 1370
+T QP G R
Sbjct: 1019 DKVTNQPLGGR 1029
Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 58/128 (45%), Gaps = 14/128 (10%)
Query: 699 GKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLV 758
G+ E + E ++A+ E + G++TH E+ P +LL V A +
Sbjct: 629 GREELIGTMEQLFMNVAIFEDEVFGGISTHQELFPHSLLSVIAN--------------FI 674
Query: 759 PYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHK 818
P+ HNQ+PRN YQC MGKQ MG QNR D +Y L Q P+V +
Sbjct: 675 PFSDHNQSPRNMYQCQMGKQTMGFPLLTYQNRSDNKLYRLQTPQSPLVRPCMYDFYDMDN 734
Query: 819 LPAGKCQI 826
P G I
Sbjct: 735 YPIGTNAI 742
Score = 43.1 bits (100), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 222 VTQVLSRLSYISGLGMMTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKN 281
V L+ L Y+S + R + F K R + R L S WG LCP TP+G CGL+ +
Sbjct: 456 VADKLNFLRYLSHFRCVHR-GAAFAKMRTTTVRRLLPES-WGFLCPVHTPDGAPCGLLNH 513
Query: 282 LALMTHITTE 291
L + + T+
Sbjct: 514 LTAVCEVVTK 523
>sp|O54888|RPA2_RAT DNA-directed RNA polymerase I subunit RPA2 OS=Rattus norvegicus
GN=Polr1b PE=1 SV=1
Length = 1135
Score = 164 bits (415), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 101/280 (36%), Positives = 141/280 (50%), Gaps = 30/280 (10%)
Query: 909 FHSPG------------LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLV 956
FH+PG +P+ HNQ+PRN YQC MGKQ MG Q+R D +Y L
Sbjct: 656 FHTPGALPSQPAEVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQ 715
Query: 957 YAQRPMVESKTIRITNFHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYR 1016
Q P+V + P G NA +AV+SY+GYD+EDA+I+NKAS +RGF VY+
Sbjct: 716 TPQSPLVRPCMYDHYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYK 775
Query: 1017 NSKCVLKQYPNQTHDRILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMP 1076
+ L + Q D ++ + D R + LD DG+ G ++
Sbjct: 776 SEFIDLSEKFKQGDDSLVFGVKPGDPRV----MQKLDNDGLPFIGAKL---------EFG 822
Query: 1077 TISVSAISMATPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKML---LRQTRRPEIG 1133
+++ T E V YK ++ + V SN + K + +R R P IG
Sbjct: 823 DPYYGYLNLNTGE--GFVVYYKSKENCVVDNIKVCSNDTGSGKFKCVCVTVRVPRNPTIG 880
Query: 1134 DKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
DKF+SRHGQKG++ + EDMPF ESG+ PDI+ NPHG
Sbjct: 881 DKFASRHGQKGILSRLWPAEDMPFTESGMMPDILFNPHGF 920
Score = 162 bits (410), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 87/191 (45%), Positives = 114/191 (59%), Gaps = 7/191 (3%)
Query: 1187 VSYKGSVPSYLEKVLVSSNSEDAFLIKML---LRQTRRPEIGDKFSSRHGQKGVIGLIVE 1243
V YK ++ + V SN + K + +R R P IGDKF+SRHGQKG++ +
Sbjct: 839 VYYKSKENCVVDNIKVCSNDTGSGKFKCVCVTVRVPRNPTIGDKFASRHGQKGILSRLWP 898
Query: 1244 QEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAF----GGTK 1299
EDMPF ESG+ PDI+ NPHG+PSRMT+G LIE +AGK+ + G + T F +
Sbjct: 899 AEDMPFTESGMMPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSA 958
Query: 1300 LVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPR 1359
L E L GYN+ G + YSGI+G LEA I+ G VYYQ+L+HMV DK R+ G R
Sbjct: 959 LEYFGEMLKAAGYNFYGTERLYSGISGMELEADIFIGVVYYQRLRHMVSDKFQVRTTGAR 1018
Query: 1360 VVLTRQPTGRR 1370
+T QP G R
Sbjct: 1019 DKVTNQPIGGR 1029
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 35/67 (52%), Gaps = 12/67 (17%)
Query: 752 FHSPG------------LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLV 799
FH+PG +P+ HNQ+PRN YQC MGKQ MG Q+R D +Y L
Sbjct: 656 FHTPGALPSQPAEVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQ 715
Query: 800 YAQRPMV 806
Q P+V
Sbjct: 716 TPQSPLV 722
Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 217 MERQGVTQVLSRLSYISGLGMMTRIN--SQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGE 274
M+ G+ V +L++I L ++ + F K R + R L WG LCP TP+G
Sbjct: 448 MQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTT-VRKLLPESWGFLCPVHTPDGA 506
Query: 275 ACGLVKNLALMTHITTE 291
CGL+ +L + + T+
Sbjct: 507 PCGLLNHLTAVCEVVTK 523
>sp|Q54BM1|RPA2_DICDI DNA-directed RNA polymerase I subunit rpa2 OS=Dictyostelium
discoideum GN=polr1b PE=3 SV=1
Length = 1130
Score = 164 bits (415), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 89/205 (43%), Positives = 127/205 (61%), Gaps = 12/205 (5%)
Query: 1178 RITEYKEVPVSYKGSVPSYLEKVLV----SSNSEDAFLIKML---LRQTRRPEIGDKFSS 1230
R ++ ++V YKG +Y+E V + + + D I + LR R P IGDKFSS
Sbjct: 826 RPSDGRQVTKDYKGKEEAYIEDVRIIFGPNGATRDPSKINNICVKLRFNRNPVIGDKFSS 885
Query: 1231 RHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYK 1290
RHGQKGV+ + + +MPF ESG+ PD+I+NP+ +PSRMT+G L+E+LAGKAG + G ++
Sbjct: 886 RHGQKGVLSQLWPEINMPFTESGMKPDVIINPNAFPSRMTIGMLVEILAGKAGAIHGKFQ 945
Query: 1291 EGTAF----GGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHM 1346
+ TAF T + E+L + G+N G + YSG TG+ E I+ G YYQ+L+HM
Sbjct: 946 DATAFQFDENNTAIDFFGEQLAKAGFNRFGNEQMYSGTTGKEFECEIFFGVCYYQRLRHM 1005
Query: 1347 VQDKIHARSRGPRVVLTRQPT-GRR 1370
V+DK R+ G LTRQP GR+
Sbjct: 1006 VKDKYQVRALGKVNALTRQPIKGRK 1030
Score = 147 bits (371), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 106/352 (30%), Positives = 158/352 (44%), Gaps = 47/352 (13%)
Query: 914 LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
L P+ +NQ+PRN YQC M KQ MG ++ R D +Y + Q+P+V +K
Sbjct: 667 LTPFSDYNQSPRNMYQCQMAKQTMGTPLHSYPFRTDNKLYKVQNVQKPIVHTKNQFKFRC 726
Query: 974 HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQ--------- 1024
+ P G NA IAV+S +GYD+EDA+I+NK++ +RGFG VY+N L Q
Sbjct: 727 NDYPHGCNAVIAVISNTGYDMEDAMIINKSAYERGFGHGSVYKNEYIDLDQGLSRFEQKK 786
Query: 1025 ----YPNQTHDRILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISV 1080
PN D + + +D DG+ G I + P+
Sbjct: 787 TFFGRPNTVVDEL---------------DKFIDTDGLPFVGRLIKPGEPYYTYIRPS--- 828
Query: 1081 SAISMATPEYKEVPVSYKGSVPSYLEKVLV----SSNSEDAFLIKML---LRQTRRPEIG 1133
+ ++V YKG +Y+E V + + + D I + LR R P IG
Sbjct: 829 --------DGRQVTKDYKGKEEAYIEDVRIIFGPNGATRDPSKINNICVKLRFNRNPVIG 880
Query: 1134 DKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSV 1193
DKFSSRHGQKGV+ + + +MPF ESG+ PD+I+NP+ I E+ G++
Sbjct: 881 DKFSSRHGQKGVLSQLWPEINMPFTESGMKPDVIINPNAFPSRMTIGMLVEILAGKAGAI 940
Query: 1194 PSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQE 1245
+ E+ I Q + ++F + G G E E
Sbjct: 941 HGKFQDATAFQFDENNTAIDFFGEQLAKAGF-NRFGNEQMYSGTTGKEFECE 991
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 67/153 (43%), Gaps = 31/153 (20%)
Query: 696 LYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSP 755
L G+ E + E IAV + GVTTH+E +P + + A
Sbjct: 620 LTSGQNELIGPQEQLYMEIAVVPHEVIKGVTTHIETSPTAMFSLLAN------------- 666
Query: 756 GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 815
L P+ +NQ+PRN YQC M KQ MG ++ R D +Y + Q+P+V +K N
Sbjct: 667 -LTPFSDYNQSPRNMYQCQMAKQTMGTPLHSYPFRTDNKLYKVQNVQKPIVHTK-----N 720
Query: 816 FHKLPAGKCQISPGGAEELTARESCHEVLKIIS 848
K +C P G C+ V+ +IS
Sbjct: 721 QFKF---RCNDYPHG---------CNAVIAVIS 741
Score = 42.4 bits (98), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 222 VTQVLSRLSYISGLGMMTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKN 281
+ L+ L +IS + R F T K + R L WG CP TP+G CGL+ +
Sbjct: 442 IADKLNFLRFISHFRSIHR--GAFFATMKTTAIRKLMPESWGFFCPVHTPDGAPCGLLNH 499
Query: 282 LALMTHITTE 291
L+ +T +
Sbjct: 500 LSSNCLVTVD 509
>sp|Q9H9Y6|RPA2_HUMAN DNA-directed RNA polymerase I subunit RPA2 OS=Homo sapiens GN=POLR1B
PE=1 SV=2
Length = 1135
Score = 163 bits (412), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 96/263 (36%), Positives = 136/263 (51%), Gaps = 18/263 (6%)
Query: 914 LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
+P+ HNQ+PRN YQC MGKQ MG Q+R D +Y L Q P+V +
Sbjct: 673 FIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDM 732
Query: 974 HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
P G NA +AV+SY+GYD+EDA+I+NKAS +RGF VY++ L + Q +
Sbjct: 733 DNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSL 792
Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKEV 1093
+ + D R + LD DG+ G ++ S +++ T E
Sbjct: 793 VFGIKPGDPRV----LQKLDDDGLPFIGAKL---------QYGDPYYSYLNLNTGE--SF 837
Query: 1094 PVSYKGSVPSYLEKVLVSSNSEDAFLIK---MLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
+ YK ++ + V SN + K + +R R P IGDKF+SRHGQKG++ +
Sbjct: 838 VMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLW 897
Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
EDMPF ESG+ PDI+ NPHG
Sbjct: 898 PAEDMPFTESGMVPDILFNPHGF 920
Score = 162 bits (409), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 86/189 (45%), Positives = 113/189 (59%), Gaps = 7/189 (3%)
Query: 1189 YKGSVPSYLEKVLVSSNSEDAFLIK---MLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQE 1245
YK ++ + V SN + K + +R R P IGDKF+SRHGQKG++ + E
Sbjct: 841 YKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAE 900
Query: 1246 DMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAF----GGTKLV 1301
DMPF ESG+ PDI+ NPHG+PSRMT+G LIE +AGK+ + G + T F + L
Sbjct: 901 DMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALE 960
Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
E L GYN+ G + YSGI+G LEA I+ G VYYQ+L+HMV DK R+ G R
Sbjct: 961 YFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDR 1020
Query: 1362 LTRQPTGRR 1370
+T QP G R
Sbjct: 1021 VTNQPIGGR 1029
Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 58/128 (45%), Gaps = 14/128 (10%)
Query: 699 GKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLV 758
GK E + E ++A+ E + GVTTH E+ P +LL V A +
Sbjct: 629 GKEELIGTMEQIFMNVAIFEDEVFAGVTTHQELFPHSLLSVIAN--------------FI 674
Query: 759 PYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHK 818
P+ HNQ+PRN YQC MGKQ MG Q+R D +Y L Q P+V +
Sbjct: 675 PFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDN 734
Query: 819 LPAGKCQI 826
P G I
Sbjct: 735 YPIGTNAI 742
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 6/120 (5%)
Query: 217 MERQGVTQVLSRLSYISGLGMMTRIN--SQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGE 274
++ G+ V +L++I L ++ + F K R + R L S WG LCP TP+GE
Sbjct: 448 LQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPES-WGFLCPVHTPDGE 506
Query: 275 ACGLVKNLALMTHITTEND-EKNMLKIMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAG 333
CGL+ +L + + T+ ++ ++ N+G+ I S Y V ++G++ G
Sbjct: 507 PCGLMNHLTAVCEVVTQFVYTASIPALLCNLGVTPID--GAPHRSYSECYPVLLDGVMVG 564
Score = 36.6 bits (83), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 358 PHECRLRDLTYSAPITVDIEYTRG--SQRVVRSDLVIGRMPIMLQSSKCVLRN 408
P ECR R TY +T DI + S+ +++ +G +PIM++S C LRN
Sbjct: 100 PAECRGRRSTYRGKLTADINWAVNGISKGIIKQ--FLGYVPIMVKSKLCNLRN 150
>sp|Q5REE8|RPA2_PONAB DNA-directed RNA polymerase I subunit RPA2 OS=Pongo abelii GN=POLR1B
PE=2 SV=1
Length = 1136
Score = 162 bits (411), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 96/263 (36%), Positives = 136/263 (51%), Gaps = 18/263 (6%)
Query: 914 LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
+P+ HNQ+PRN YQC MGKQ MG Q+R D +Y L Q P+V +
Sbjct: 673 FIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDM 732
Query: 974 HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
P G NA +AV+SY+GYD+EDA+I+NKAS +RGF VY++ L + Q +
Sbjct: 733 DNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSL 792
Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKEV 1093
+ + D R + LD DG+ G ++ S +++ T E
Sbjct: 793 VFGMKPGDPRI----LQKLDDDGLPFIGAKL---------QYGDPYYSYLNLNTGE--SF 837
Query: 1094 PVSYKGSVPSYLEKVLVSSNSEDAFLIK---MLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
+ YK ++ + V SN + K + +R R P IGDKF+SRHGQKG++ +
Sbjct: 838 VMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLW 897
Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
EDMPF ESG+ PDI+ NPHG
Sbjct: 898 PAEDMPFTESGMVPDILFNPHGF 920
Score = 161 bits (408), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 86/189 (45%), Positives = 113/189 (59%), Gaps = 7/189 (3%)
Query: 1189 YKGSVPSYLEKVLVSSNSEDAFLIK---MLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQE 1245
YK ++ + V SN + K + +R R P IGDKF+SRHGQKG++ + E
Sbjct: 841 YKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAE 900
Query: 1246 DMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAF----GGTKLV 1301
DMPF ESG+ PDI+ NPHG+PSRMT+G LIE +AGK+ + G + T F + L
Sbjct: 901 DMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALE 960
Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
E L GYN+ G + YSGI+G LEA I+ G VYYQ+L+HMV DK R+ G R
Sbjct: 961 YFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDR 1020
Query: 1362 LTRQPTGRR 1370
+T QP G R
Sbjct: 1021 VTNQPIGGR 1029
Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 58/128 (45%), Gaps = 14/128 (10%)
Query: 699 GKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLV 758
GK E + E ++A+ E + GVTTH E+ P +LL V A +
Sbjct: 629 GKEELIGTMEQIFMNVAIFEDEVFAGVTTHQELFPHSLLSVIAN--------------FI 674
Query: 759 PYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHK 818
P+ HNQ+PRN YQC MGKQ MG Q+R D +Y L Q P+V +
Sbjct: 675 PFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDN 734
Query: 819 LPAGKCQI 826
P G I
Sbjct: 735 YPIGTNAI 742
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 6/120 (5%)
Query: 217 MERQGVTQVLSRLSYISGLGMMTRIN--SQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGE 274
++ G+ V +L++I L ++ + F K R + R L S WG LCP TP+GE
Sbjct: 448 LQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPES-WGFLCPVHTPDGE 506
Query: 275 ACGLVKNLALMTHITTEND-EKNMLKIMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAG 333
CGL+ +L + + T+ ++ ++ N+G+ I S Y V ++G++ G
Sbjct: 507 PCGLMNHLTAVCEVVTQFVYTASIPALLCNLGVTPID--GAPHRSYSECYPVLLDGVMVG 564
>sp|Q6GZR3|RPB2_FRG3G Putative DNA-directed RNA polymerase II subunit RPB2 homolog OS=Frog
virus 3 (isolate Goorha) GN=FV3-062L PE=3 SV=1
Length = 1221
Score = 162 bits (410), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 93/294 (31%), Positives = 153/294 (52%), Gaps = 40/294 (13%)
Query: 914 LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
++P+ H Q+PRN YQ MGKQA+G N +R D ++ L Y Q+ +V+S++++ F
Sbjct: 741 VIPFYDHTQSPRNAYQSNMGKQAIGFPAVNCSDRYDATLHRLDYPQKSLVDSRSVKRLGF 800
Query: 974 HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
++ G +A+M+ G++ ED++++N +SLDRG C+ YR C K+ +D
Sbjct: 801 DEMAHGALPVVAIMTAGGFNQEDSVVLNASSLDRGLFSCVTYRTVSCADKR--RTKYDSE 858
Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAP---------------------GEQ-------IC 1065
+ L + R + + L DG++ P G++ +C
Sbjct: 859 VVCLPDWGLRNREWDYDLLGDDGVIDPSCAGALARRVEGKRKAAKRPAGQRTGGGPAGLC 918
Query: 1066 ER------QVLVNKSMPTISVSAISMATPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFL 1119
+ VLV K +S S P ++V ++ K S YL++V V +S+ L
Sbjct: 919 DALWIPAGTVLVGK----VSHSLGPGGNPMRRDVSLTVKQSEEGYLDRVTVDVDSDGKKL 974
Query: 1120 IKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
+K+ LR R PE+GDKF+S QKG G ++ QEDMPF++ G+ PD+I+NPH
Sbjct: 975 VKVRLRTPRHPEMGDKFASFTAQKGTCGAVLTQEDMPFDKDGVVPDLIINPHAF 1028
Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 79/189 (41%), Positives = 113/189 (59%), Gaps = 2/189 (1%)
Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
++V ++ K S YL++V V +S+ L+K+ LR R PE+GDKF+S QKG G ++
Sbjct: 946 RDVSLTVKQSEEGYLDRVTVDVDSDGKKLVKVRLRTPRHPEMGDKFASFTAQKGTCGAVL 1005
Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV- 1301
QEDMPF++ G+ PD+I+NPH +PSRMTV L+++ G A G + TAF +V
Sbjct: 1006 TQEDMPFDKDGVVPDLIINPHAFPSRMTVNYLLQMCFGTAACKLGKTYDATAFEREDVVR 1065
Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
D+ E G + + +SG TG L I+ P YQ+LKHMV K+H+R+ GP
Sbjct: 1066 DIAEAAKEAGIDCW-DSVLHSGSTGRRLPTKIFMAPCPYQRLKHMVSGKMHSRTHGPTDA 1124
Query: 1362 LTRQPTGRR 1370
LTRQP R
Sbjct: 1125 LTRQPVAGR 1133
Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 70/147 (47%), Gaps = 9/147 (6%)
Query: 197 ITNALTAAIQTGNWTIRRF---KMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVSG 253
+TN+L TGNWT++R R GV+QVLS +Y + + + RI K
Sbjct: 480 MTNSLHMCFATGNWTVKRLGPPSYVRVGVSQVLSNNNYGARVSHLRRIMHAVSFRGKNIR 539
Query: 254 PRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMFN 313
R L S +G LCP +TPEGE G+V N+A + E + +L + +G F
Sbjct: 540 MRQLHSSHYGFLCPYETPEGEKVGIVLNMAEGAGFSLETPREVVLATV-RLGKGLPGFFE 598
Query: 314 GEEL-----SSPGVYLVFVNGILAGIT 335
G + G V V+G+L G+T
Sbjct: 599 GAPARLAWSGAAGSASVDVDGVLCGVT 625
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 41/66 (62%)
Query: 757 LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 816
++P+ H Q+PRN YQ MGKQA+G N +R D ++ L Y Q+ +V+S++++ F
Sbjct: 741 VIPFYDHTQSPRNAYQSNMGKQAIGFPAVNCSDRYDATLHRLDYPQKSLVDSRSVKRLGF 800
Query: 817 HKLPAG 822
++ G
Sbjct: 801 DEMAHG 806
Score = 36.6 bits (83), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%)
Query: 479 AMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRF 528
A +L M++RM A S DRD NKR++ G L++ + + + K++
Sbjct: 405 AEHLGWMVKRMADAASGIGTCTDRDDLANKRVDATGPLIAFLLDGLLKQY 454
>sp|Q91F97|RPB2_IIV6 Probable DNA-directed RNA polymerase II subunit RPB2 homolog
OS=Invertebrate iridescent virus 6 GN=IIV6-428L PE=3 SV=1
Length = 1193
Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 88/270 (32%), Positives = 141/270 (52%), Gaps = 27/270 (10%)
Query: 915 VPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFH 974
+P+ H Q+PR YQ +M KQA+G I + + D + Y QRP+V ++ + F+
Sbjct: 728 IPFAEHTQSPRLCYQSSMAKQAIGNIP-SHHVKSDNTTRVMDYVQRPLVTTQIAEMNRFN 786
Query: 975 KLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRIL 1034
P G NA +AV Y+G++ ED++I+NKAS+DRG + Y+ ++++ +++I
Sbjct: 787 DFPNGLNAMVAVAIYTGFNQEDSIILNKASIDRGMFHVVTYKT--IIVEERKIGVNEKIC 844
Query: 1035 GP-----------LLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAI 1083
P LLE + P + G+V + VLV K + IS
Sbjct: 845 MPVASVRRMNNYSLLEDNPESPYF--------GVVKVKSFVKRNDVLVGKVITKISKDGT 896
Query: 1084 SMATPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQK 1143
T V +S +G V ++ ++ + + K+++ Q +RPEIGDKF S QK
Sbjct: 897 RQETDHSTIVSISEEGKVDR-----IIRTSKKGILMFKIVIAQQKRPEIGDKFCSAMAQK 951
Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
G +G+I+E+ DMPF E G PD+I+NPH L
Sbjct: 952 GTVGMILEEVDMPFMEDGSIPDMIINPHCL 981
Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 74/196 (37%), Positives = 110/196 (56%), Gaps = 15/196 (7%)
Query: 1185 VPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQ 1244
V +S +G V ++ ++ + + K+++ Q +RPEIGDKF S QKG +G+I+E+
Sbjct: 906 VSISEEGKVDR-----IIRTSKKGILMFKIVIAQQKRPEIGDKFCSAMAQKGTVGMILEE 960
Query: 1245 EDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEG-NYKEGTAFGGTKLVDV 1303
DMPF E G PD+I+NPH PSRMT+ +++ + GK + + + + F + L
Sbjct: 961 VDMPFMEDGSIPDMIINPHCLPSRMTINQIMASIMGKTCCAKNETFGDASPFQESSLEKP 1020
Query: 1304 QE-------ELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHAR-- 1354
Q+ EL GYNY G + G G+ L A I+ GPVYY +L HMV DKI +R
Sbjct: 1021 QDKIHALCKELEECGYNYNGTETMMCGWNGKKLRAEIFFGPVYYHRLTHMVSDKIFSRAS 1080
Query: 1355 SRGPRVVLTRQPTGRR 1370
+ R +TRQP R
Sbjct: 1081 TNQKRHAITRQPLNGR 1096
Score = 57.8 bits (138), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 59/133 (44%), Gaps = 17/133 (12%)
Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIR--PGVTTHLEIAPFTLLGVCAGIELLQYN 749
F + L G + Y D E S IA++ + P V +EI +LGV A
Sbjct: 674 FQNCLENGHVVYKDAYEIEQSQIAINLQDLSRYPTVYDSMEIHASCMLGVMAA------- 726
Query: 750 KRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESK 809
+P+ H Q+PR YQ +M KQA+G I + + D + Y QRP+V ++
Sbjct: 727 -------QIPFAEHTQSPRLCYQSSMAKQAIGNIP-SHHVKSDNTTRVMDYVQRPLVTTQ 778
Query: 810 TIRITNFHKLPAG 822
+ F+ P G
Sbjct: 779 IAEMNRFNDFPNG 791
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 69/144 (47%), Gaps = 5/144 (3%)
Query: 197 ITNALTAAIQTGNWTIRRFKMERQGVTQV-LSRLSYISGLGMMTRINSQFEKTRKVSGPR 255
IT L + TGNW +++ R GV Q+ +++S+ + + R K K + R
Sbjct: 467 ITTGLHFSFSTGNWGVQKNNYIRTGVAQIPQNKVSFGAFFSYLRRFVIPMGKEGKNTKIR 526
Query: 256 SLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIM--YNIGIEHIAMFN 313
+ S CPS+TPEG+ G+ N +++ ++ + +I+ + +H+ +
Sbjct: 527 QIHPSSIFFACPSETPEGQFVGITLNFSMLAEVSIRTSSVVIKEIIEASHQAFKHVHEIS 586
Query: 314 GEELSS--PGVYLVFVNGILAGIT 335
EE + ++FVNG + G+T
Sbjct: 587 LEENKQFLSKLSIIFVNGGICGLT 610
Score = 37.4 bits (85), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDI-EYT-RGSQRVVRSD---LVIGRM 395
V KP I R P E R + +TY + + VD+ EY R + ++ + + I ++
Sbjct: 102 VAKPTITNDDTTVRPLYPAEARQKMITYDSFVFVDVLEYVLRDEEEILVNKHLRVQIAKI 161
Query: 396 PIMLQSSKCVLRNKT 410
PIML+SS C L N T
Sbjct: 162 PIMLRSSTCNLYNCT 176
Score = 34.7 bits (78), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 500 DDRDYYGNKRLELAGSLLSLMFEDVFKRF 528
+DRD Y NKR+E AG L +F ++KRF
Sbjct: 414 EDRDNYSNKRVETAGVLCFELFRMLYKRF 442
>sp|Q9LK40|RPD2A_ARATH DNA-directed RNA polymerase D subunit 2a OS=Arabidopsis thaliana
GN=NRPD2a PE=1 SV=1
Length = 1172
Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 90/249 (36%), Positives = 135/249 (54%), Gaps = 22/249 (8%)
Query: 1135 KFSSRHGQKGVIGLIVEQEDMPFNESGICP-DIIMNPHGLKGCDRITEYKEVPVSYKGSV 1193
+F H + G + + E + PF + + DI++ G D + K +
Sbjct: 828 QFGKTHSKIGKVDSL-EDDGFPFIGANMSTGDIVIGRCTESGADH-------SIKLKHTE 879
Query: 1194 PSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESG 1253
++KV++SSN E + LRQ R P +GDKFSS HGQKGV+G + EQ++ PF G
Sbjct: 880 RGIVQKVVLSSNDEGKNFAAVSLRQVRSPCLGDKFSSMHGQKGVLGYLEEQQNFPFTIQG 939
Query: 1254 ICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKL------------V 1301
I PDI++NPH +PSR T G+L+E K G+ KEG++ TKL
Sbjct: 940 IVPDIVINPHAFPSRQTPGQLLEAALSK-GIACPIQKEGSSAAYTKLTRHATPFSTPGVT 998
Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
++ E+L R G++ G + Y+G +GE + + I+ GP +YQ+L HM +DK+ R+ GP
Sbjct: 999 EITEQLHRAGFSRWGNERVYNGRSGEMMRSMIFMGPTFYQRLVHMSEDKVKFRNTGPVHP 1058
Query: 1362 LTRQPTGRR 1370
LTRQP R
Sbjct: 1059 LTRQPVADR 1067
Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 86/264 (32%), Positives = 135/264 (51%), Gaps = 13/264 (4%)
Query: 911 SPGLVPYPHHNQAPRNTYQCAMG-KQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIR 969
S +VP+ +H+ R YQ +QA+G N R DTL L Y Q+P+ ++
Sbjct: 700 SCAVVPFANHDHGRRVLYQSQKHCQQAIGFSSTNPNIRCDTLSQQLFYPQKPLFKTLASE 759
Query: 970 ITNFHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQT 1029
L GQNA +AV + GY+ ED+++MNKASL+RG R R+ K + ++
Sbjct: 760 CLKKEVLFNGQNAIVAVNVHLGYNQEDSIVMNKASLERGMFRSEQIRSYKAEVDAKDSEK 819
Query: 1030 HDRILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPE 1089
++ + T + + +L+ DG G + +++ + + + +I + E
Sbjct: 820 RKKMDELVQFGKTHSKIGKVDSLEDDGFPFIGANMSTGDIVIGRCTESGADHSIKLKHTE 879
Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
+G V +KV++SSN E + LRQ R P +GDKFSS HGQKGV+G +
Sbjct: 880 --------RGIV----QKVVLSSNDEGKNFAAVSLRQVRSPCLGDKFSSMHGQKGVLGYL 927
Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
EQ++ PF GI PDI++NPH
Sbjct: 928 EEQQNFPFTIQGIVPDIVINPHAF 951
Score = 74.3 bits (181), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 80/150 (53%), Gaps = 8/150 (5%)
Query: 188 IVNHMRQDTITNALTAAIQTGNWTIRRFKMER-QGVTQVLSRLSYISGLGMMTRINSQFE 246
I +++ ITN L+ A TG W+ KMER GV L R + + L + R Q
Sbjct: 439 IEHYLDASVITNGLSRAFSTGAWSHPFRKMERVSGVVANLGRANPLQTLIDLRRTRQQVL 498
Query: 247 KTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGI 306
T KV R S WG +C TP+GE CGLVKN++L+ ++T++ E ++++ ++ G+
Sbjct: 499 YTGKVGDARYPHPSHWGRVCFLSTPDGENCGLVKNMSLLGLVSTQSLE-SVVEKLFACGM 557
Query: 307 EHIAMFNGEELSSP--GVYLVFVNGILAGI 334
E + ++ +P G + V +NG G+
Sbjct: 558 EELM----DDTCTPLFGKHKVLLNGDWVGL 583
Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 15/87 (17%)
Query: 723 PGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMG-KQAMG 781
P + TH E+ LLGV S +VP+ +H+ R YQ +QA+G
Sbjct: 683 PKIYTHCELDLSFLLGV--------------SCAVVPFANHDHGRRVLYQSQKHCQQAIG 728
Query: 782 CIGYNQQNRIDTLMYNLVYAQRPMVES 808
N R DTL L Y Q+P+ ++
Sbjct: 729 FSSTNPNIRCDTLSQQLFYPQKPLFKT 755
Score = 35.4 bits (80), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 27/43 (62%)
Query: 475 FKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGSLL 517
K KA +L M++ ++ + + ++RD + NKR+ELAG LL
Sbjct: 365 LKKKARFLGYMVKCLLNSYAGKRKCENRDSFRNKRIELAGELL 407
>sp|Q9LV32|RPD2B_ARATH DNA-directed RNA polymerase D subunit 2b OS=Arabidopsis thaliana
GN=NRPD2b PE=2 SV=1
Length = 1119
Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 85/234 (36%), Positives = 127/234 (54%), Gaps = 20/234 (8%)
Query: 1150 VEQEDMPFNESGICP-DIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSED 1208
+E + PF + + DI++ G D + K + ++KV++SSN E
Sbjct: 788 LEDDGFPFIGANMSTGDIVIGRCTESGADH-------SIKLKHTERGIVQKVVLSSNDEG 840
Query: 1209 AFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSR 1268
+ LRQ R P +GDKFSS HGQKGV+G + EQ++ PF GI PDI++NPH +PSR
Sbjct: 841 KNFAAVSLRQVRSPCLGDKFSSMHGQKGVLGYLEEQQNFPFTIQGIVPDIVINPHAFPSR 900
Query: 1269 MTVGKLIELLAGKAGLMEGNYKEGTAFGGTKL------------VDVQEELIRHGYNYQG 1316
T G+L+E K KEG++ TKL ++ E+L R G++ G
Sbjct: 901 QTPGQLLEAALSKGIACPIQKKEGSSAAYTKLTRHATPFSTPGVTEITEQLHRAGFSRWG 960
Query: 1317 KDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRR 1370
+ Y+G +GE + + I+ GP +YQ+L HM ++K+ R+ GP LTRQP R
Sbjct: 961 NERVYNGRSGEMMRSLIFMGPTFYQRLVHMSENKVKFRNTGPVHPLTRQPVADR 1014
Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 86/264 (32%), Positives = 135/264 (51%), Gaps = 13/264 (4%)
Query: 911 SPGLVPYPHHNQAPRNTYQCAMG-KQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIR 969
S +VP+ +H+ R YQ +QA+G N R DTL L Y Q+P+ ++
Sbjct: 646 SCAIVPFANHDHGKRVLYQSQKHCQQAIGFSSTNPNIRCDTLSQQLFYPQKPLFKTLASE 705
Query: 970 ITNFHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQT 1029
L GQNA +AV + GY+ ED+++MNKASL+RG R R+ K + ++
Sbjct: 706 CLEKEVLFNGQNAIVAVNVHLGYNQEDSIVMNKASLERGMFRSEQIRSYKAEVDTKDSEK 765
Query: 1030 HDRILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPE 1089
++ + T + + +L+ DG G + +++ + + + +I + E
Sbjct: 766 RKKMDELVQFGKTYSKIGKVDSLEDDGFPFIGANMSTGDIVIGRCTESGADHSIKLKHTE 825
Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
+G V +KV++SSN E + LRQ R P +GDKFSS HGQKGV+G +
Sbjct: 826 --------RGIV----QKVVLSSNDEGKNFAAVSLRQVRSPCLGDKFSSMHGQKGVLGYL 873
Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
EQ++ PF GI PDI++NPH
Sbjct: 874 EEQQNFPFTIQGIVPDIVINPHAF 897
Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 79/150 (52%), Gaps = 8/150 (5%)
Query: 188 IVNHMRQDTITNALTAAIQTGNWTIRRFKMER-QGVTQVLSRLSYISGLGMMTRINSQFE 246
I +++ ITN L A TG W+ KMER GV L R + + L + R Q
Sbjct: 385 IEHYLDASVITNGLNRAFSTGAWSHPFRKMERVSGVVANLGRANPLQTLIDLRRTRQQVL 444
Query: 247 KTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGI 306
T KV R S WG +C TP+GE CGLVKN++L+ ++T+ E +++++++ G+
Sbjct: 445 YTGKVGDARHPHPSHWGRVCFLSTPDGENCGLVKNMSLLGLVSTQGLE-SVVEMLFTCGM 503
Query: 307 EHIAMFNGEELSSP--GVYLVFVNGILAGI 334
E + + S+P G + V +NG G+
Sbjct: 504 EELM----NDTSTPLCGKHKVLLNGDWVGL 529
Score = 38.1 bits (87), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 15/87 (17%)
Query: 723 PGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMG-KQAMG 781
P TH E+ LLGV S +VP+ +H+ R YQ +QA+G
Sbjct: 629 PKNYTHCELDLSFLLGV--------------SCAIVPFANHDHGKRVLYQSQKHCQQAIG 674
Query: 782 CIGYNQQNRIDTLMYNLVYAQRPMVES 808
N R DTL L Y Q+P+ ++
Sbjct: 675 FSSTNPNIRCDTLSQQLFYPQKPLFKT 701
Score = 37.0 bits (84), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%)
Query: 475 FKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGSLL 517
K KA +L M++ ++ A + ++RD + NKR+ELAG LL
Sbjct: 311 LKKKARFLGYMVKCLLSAYAGKRKCENRDSFRNKRIELAGELL 353
>sp|Q197F1|RPB2_IIV3 Probable DNA-directed RNA polymerase II subunit RPB2 homolog
OS=Invertebrate iridescent virus 3 GN=IIV3-009R PE=3 SV=1
Length = 1140
Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 74/165 (44%), Positives = 105/165 (63%), Gaps = 5/165 (3%)
Query: 1211 LIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMT 1270
++K+++ Q R PEIGDKF S QKG G+I QEDMPF SG+ PDII+NP+ PSRMT
Sbjct: 887 IVKVVIGQMRTPEIGDKFCSGMAQKGTCGMIFPQEDMPFTASGMTPDIIINPNCIPSRMT 946
Query: 1271 VGKLIELLAGKAGLMEGN--YKEGTAF---GGTKLVDVQEELIRHGYNYQGKDIFYSGIT 1325
+ ++I + GK + N ++ G +F T L ++ L +G++ G ++ YSG T
Sbjct: 947 INQIISTVMGKLYTVNPNPRFRNGNSFQENSNTILKELCHHLKLNGFDPSGSEVMYSGFT 1006
Query: 1326 GEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRR 1370
GE +++ I+ GP YY +LKHMV+DK+HARS G L RQP R
Sbjct: 1007 GERIQSTIFMGPTYYHRLKHMVKDKMHARSHGQVTTLHRQPNCGR 1051
Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 84/261 (32%), Positives = 139/261 (53%), Gaps = 14/261 (5%)
Query: 913 GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
G++P+P Q+ RN + +M KQA+G + + + +T+ + L Y Q+P+V +
Sbjct: 691 GIIPFPDRTQSARNCFYSSMVKQAIGFVPCHNL-KTETVSHTLNYPQKPLVTTSFAEYNQ 749
Query: 973 FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
++ P G NA +A+ Y+GY+ ED++I+NK+S+DRG + Y N+ ++ +R
Sbjct: 750 LNEYPNGINAIVAIACYTGYNQEDSIILNKSSIDRGLFGTITY-NTFTAQEKKNGIIEER 808
Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKE 1092
I P R Y + DGIV +++ + VL+ K I + K
Sbjct: 809 IEIPSNAIKIRDCNYG--LVGPDGIVRLRQRVKKGDVLICKV-------TIKNKNQDEKL 859
Query: 1093 VPVSY--KGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
V S + Y++++ V + + ++K+++ Q R PEIGDKF S QKG G+I
Sbjct: 860 VDSSVIVQHGEEGYVDRI-VDNVIDGCRIVKVVIGQMRTPEIGDKFCSGMAQKGTCGMIF 918
Query: 1151 EQEDMPFNESGICPDIIMNPH 1171
QEDMPF SG+ PDII+NP+
Sbjct: 919 PQEDMPFTASGMTPDIIINPN 939
Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 95/431 (22%), Positives = 168/431 (38%), Gaps = 78/431 (18%)
Query: 453 VDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLEL 512
++D + L H+ + + R K + LA M+++ +L L+ +D+RD Y +KR+E
Sbjct: 343 IEDVQKSLDMDLFPHLGITSTR-KQRVDLLAFMVKKYLLTLTRKIPVDNRDDYNHKRVET 401
Query: 513 AGSLLSLMFEDVFKRF---------NSELKETNLSGVVNLVSGWWFELKYG-----NKIY 558
AG L S +F ++K+F N + +N + +G + G Y
Sbjct: 402 AGELYSFLFRLLYKKFQKTCITQIRNRKPDISNFLRTSGITTGILYSFSSGYWGVQRNTY 461
Query: 559 IRS-------PSRKLLAAGFS-------------GPHSGRVRLMPEGPTILLNSCLRSGG 598
IR+ P LLA S + +R + + L+ G
Sbjct: 462 IRTGVSQVVNPKVSLLANYSSLRRVVIPESKDGKEAKTSEIRQIHPSSSFLVCPVETPEG 521
Query: 599 KAQHEALYNAV-QRHATKCCTLNFLFFLGGGGI----LPSIQRQTTCLLTLILFSLNGDG 653
K L AV + T T + + G+ +I+ CLL LI S G+G
Sbjct: 522 KGVGTVLNMAVFCQVTTGISTCEIMDQIDSFGVDLKCHCTIKDPNNCLLLLINGSPYGNG 581
Query: 654 KRGARNSQQYCDCPD--------------GYSSGCQPRPTFLNMHQFLGFK-----RFDD 694
+ + + + +G RP F ++ + F+ F
Sbjct: 582 HANVIHRLNFLNDTNISIVVNRALGVIEIFSDAGRFIRPIF-DLDKICNFEGEIVPSFKW 640
Query: 695 FLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTH---LEIAPFTLLGVCAGIELLQYNKR 751
FL I Y+D+NE + IA+ + T +E+ P + G+ AGI
Sbjct: 641 FLDNQLIRYIDINEAAANSIAIELRDLSTNPNTRYNLMELDPCGMFGIVAGI-------- 692
Query: 752 FHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTI 811
+P+P Q+ RN + +M KQA+G + + + +T+ + L Y Q+P+V +
Sbjct: 693 ------IPFPDRTQSARNCFYSSMVKQAIGFVPCHNL-KTETVSHTLNYPQKPLVTTSFA 745
Query: 812 RITNFHKLPAG 822
++ P G
Sbjct: 746 EYNQLNEYPNG 756
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 74/149 (49%), Gaps = 11/149 (7%)
Query: 146 KLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPKIKAAQFDIVNHMRQDTITNALTAAI 205
K ++ +YS + L Y K+ I +I+ + DI N +R IT + +
Sbjct: 397 KRVETAGELYSFLFRLLYKKF-------QKTCITQIRNRKPDISNFLRTSGITTGILYSF 449
Query: 206 QTGNWTIRRFKMERQGVTQVLS-RLSYISGLGMMTRI---NSQFEKTRKVSGPRSLQGSQ 261
+G W ++R R GV+QV++ ++S ++ + R+ S+ K K S R + S
Sbjct: 450 SSGYWGVQRNTYIRTGVSQVVNPKVSLLANYSSLRRVVIPESKDGKEAKTSEIRQIHPSS 509
Query: 262 WGMLCPSDTPEGEACGLVKNLALMTHITT 290
++CP +TPEG+ G V N+A+ +TT
Sbjct: 510 SFLVCPVETPEGKGVGTVLNMAVFCQVTT 538
Score = 37.7 bits (86), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 40/71 (56%)
Query: 101 DETSKLKDSPEIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDP 160
++ +KL ++ K+V + K GLVK I++F++FI+ +K ++ ++I
Sbjct: 5 NQKTKLDKHLSSDNRAKIVADYFKTNGLVKHQIETFNHFISKGLKTIINNESSIKYQSHD 64
Query: 161 LFYLKYLDIHV 171
+ LK+ +I+V
Sbjct: 65 NYSLKFTNIYV 75
>sp|Q3B1H7|RPOB_PELLD DNA-directed RNA polymerase subunit beta OS=Pelodictyon luteolum
(strain DSM 273) GN=rpoB PE=3 SV=1
Length = 1301
Score = 144 bits (363), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 138/456 (30%), Positives = 189/456 (41%), Gaps = 77/456 (16%)
Query: 971 TNFHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRN--SKCVLKQYPNQ 1028
T +L G+N +A M + GY+ EDA+I+++ LVY + + + ++
Sbjct: 781 TEDGELALGKNVLVAFMPWRGYNFEDAIILSER---------LVYDDVFTSIHVHEFEAN 831
Query: 1029 THDRILGPLLEADTRKPVYR-----HRALDQDGIVAPGEQICERQVLVNKSMPTISVSAI 1083
D G E + +Y R LD++GIV G ++ ER +LV K P
Sbjct: 832 VRDTKRG---EEQFTRDIYNVSDEALRNLDENGIVRIGAEVKERDILVGKITP----KGE 884
Query: 1084 SMATPEYK------------------EVPVSYKG----------------SVPSYLEKVL 1109
S TPE K VP KG V LE +
Sbjct: 885 SDPTPEEKLLRAIFGDKSSDVKDASMHVPAGMKGIVIKTKLFSRKKKVGMDVKEKLELID 944
Query: 1110 VSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVI----------GLIVEQEDMPFNE 1159
+ L K + R+ G K KG + L+ + PF E
Sbjct: 945 ARFERREIELRKSFEKWLRQMLQGKKVKGLTSDKGKVLADEGAAFDDALLAKFSSQPFLE 1004
Query: 1160 SGICPDIIMNPHGLKGCDR--ITEYKEVPVSYKGSVPSYL-EKVLVSSNSE----DAFLI 1212
S D + G K D I KE K EK V+ E L
Sbjct: 1005 S---IDFTLGVTGTKKVDEAVIRLVKEFRFKLKDLADERDNEKYKVNVGDELPPGIEELA 1061
Query: 1213 KMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVG 1272
K+ + Q R+ ++GDK + RHG KGV+G I+ EDMPF G DI++NP G PSRM +G
Sbjct: 1062 KVYIAQKRKIQVGDKMAGRHGNKGVVGKILPIEDMPFMADGTPVDIVLNPLGVPSRMNIG 1121
Query: 1273 KLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAY 1332
+L E G A G + F G +VQ EL R G GK Y G TGE +
Sbjct: 1122 QLYETSLGWAAKKLGVKFKTPIFNGATYEEVQAELERAGLPMHGKVRLYDGRTGEQFDDE 1181
Query: 1333 IYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTG 1368
+ G +Y KL H+V DKIHARS GP ++T+QP G
Sbjct: 1182 VTVGYIYMLKLSHLVDDKIHARSTGPYSLITQQPLG 1217
Score = 36.6 bits (83), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 17/115 (14%)
Query: 174 ADKIIPKIKAAQFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYIS 233
+DKI P D++N ++ ++ A Q + + + + +S L
Sbjct: 469 SDKIAPA------DLINARTVSSVVSSFFATSQLSQFMDQTNPLAEMTNKRRVSAL---- 518
Query: 234 GLGMMTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHI 288
G G +TR + FE R + + +G LCP +TPEG GL+ +L++ I
Sbjct: 519 GPGGLTRERAGFE-------VRDVHYTHYGRLCPIETPEGPNIGLISSLSVYAEI 566
>sp|P20028|RPA2_DROME DNA-directed RNA polymerase I subunit RPA2 OS=Drosophila melanogaster
GN=RpI135 PE=2 SV=2
Length = 1129
Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 73/165 (44%), Positives = 97/165 (58%), Gaps = 5/165 (3%)
Query: 1211 LIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMT 1270
++ + LR R IGDKF+SR GQKG+ ED+PF ESG+ PDI+ NPHG+PSRMT
Sbjct: 857 MVAITLRVPRPATIGDKFASRAGQKGICSQKYPAEDLPFTESGLIPDIVFNPHGFPSRMT 916
Query: 1271 VGKLIELLAGKAGLMEGNYKEGTAF----GGTKLVDVQEELIRHGYNYQGKDIFYSGITG 1326
+ +IE +AGK + GN + T F T + + L GYNY G + YSG+ G
Sbjct: 917 IAMMIETMAGKGAAIHGNVYDATPFRFSEENTAIDYFGKMLEAGGYNYYGTERLYSGVDG 976
Query: 1327 EALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPT-GRR 1370
+ A I+ G V+YQ+L+HMV DK RS G T QP GR+
Sbjct: 977 REMTADIFFGVVHYQRLRHMVFDKWQVRSTGAVEARTHQPIKGRK 1021
Score = 137 bits (345), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 94/279 (33%), Positives = 130/279 (46%), Gaps = 57/279 (20%)
Query: 914 LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPM---VESKTIRI 970
L+P P +NQ+PRN YQC MGKQ MG N + +Y L P+ V I++
Sbjct: 671 LIPMPDYNQSPRNMYQCQMGKQTMGTPCLNWPKQAANKLYRLQTPGTPLFRPVHYDNIQL 730
Query: 971 TNFHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTH 1030
+F G NA +AV+SY+GYD+EDA+I+NKA+ +RGF +Y+ L + +
Sbjct: 731 DDF---AMGTNAIVAVISYTGYDMEDAMIINKAAYERGFAYGSIYKTKFLTLDKKSSYFA 787
Query: 1031 DRILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEY 1090
P L +H LD DG+ PG S +S +P Y
Sbjct: 788 RHPHMPEL--------IKH--LDTDGLPHPG-------------------SKLSYGSPLY 818
Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAF----------------LIKMLLRQTRRPEIGD 1134
+ G V +Y KV+ ED ++ + LR R IGD
Sbjct: 819 ----CYFDGEVATY--KVVKMDEKEDCIVESIRQLGSFDLSPKKMVAITLRVPRPATIGD 872
Query: 1135 KFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
KF+SR GQKG+ ED+PF ESG+ PDI+ NPHG
Sbjct: 873 KFASRAGQKGICSQKYPAEDLPFTESGLIPDIVFNPHGF 911
Score = 58.2 bits (139), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 53/120 (44%), Gaps = 17/120 (14%)
Query: 700 KIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVP 759
++EY+ E IA+ + P TTHLE+A + A L+P
Sbjct: 628 RVEYIGTLEQLYMEIAIDAKEMYPDFTTHLELAKTHFMSNLAN--------------LIP 673
Query: 760 YPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPM---VESKTIRITNF 816
P +NQ+PRN YQC MGKQ MG N + +Y L P+ V I++ +F
Sbjct: 674 MPDYNQSPRNMYQCQMGKQTMGTPCLNWPKQAANKLYRLQTPGTPLFRPVHYDNIQLDDF 733
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 73/149 (48%), Gaps = 18/149 (12%)
Query: 192 MRQ-DTITNALTAAIQTGNWTIRRFK--MERQGV---TQVLSRLSYISGLGMMTRINSQF 245
MRQ + A+ + + TGN R M+ G+ + ++R+ Y+S + R +
Sbjct: 420 MRQAGGVGRAIESFLATGNIASRTGLGLMQNSGLVIMAENINRMRYMSHFRAIHR--GSY 477
Query: 246 EKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKI---MY 302
T + + R L WG +CP TP+G CGL+ +L L I+ D K + I +
Sbjct: 478 FTTMRTTEARQLLPDAWGFICPVHTPDGTPCGLLNHLTLTCEISMRPDPKLVKAIPKHLI 537
Query: 303 NIGIEHIA--MFNGEELSSPGVYLVFVNG 329
++G+ ++ + GE+L Y+VF++G
Sbjct: 538 DMGMMPLSNRRYLGEKL-----YVVFLDG 561
>sp|P0C8K3|RPB2_ASFM2 DNA-directed RNA polymerase subunit 2 OS=African swine fever virus
(isolate Tick/Malawi/Lil 20-1/1983) GN=Mal-061 PE=3 SV=1
Length = 1242
Score = 137 bits (346), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 82/220 (37%), Positives = 114/220 (51%), Gaps = 14/220 (6%)
Query: 1177 DRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKG 1236
D + +Y + V Y P+ ++ V+ D M LR R IGDK SSR G KG
Sbjct: 945 DELNKYIDRSVMYGFDEPAVVDAVMRPHGPNDEIFGLMRLRYERNLNIGDKMSSRSGNKG 1004
Query: 1237 VIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFG 1296
+ L + DMPF E G+ PD+I+NPH +PSRMT G++IE G A ++G +GTAF
Sbjct: 1005 IAALALPTSDMPFTEDGLQPDLIVNPHSHPSRMTNGQMIETTVGLANALQGVVTDGTAFL 1064
Query: 1297 GTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHA-RS 1355
+ + E L + G + G ++G TGE +A I+ GP Y+Q+L+ V D +A S
Sbjct: 1065 PINVQLLSERLAQEGLRFNGCQKMFNGQTGEYFDAAIFIGPTYHQRLQKFVLDDRYAVAS 1124
Query: 1356 RGPRVVLTRQP-TGRR------------WKLTFTPALCTI 1382
GP LT QP G+R W LT A+ TI
Sbjct: 1125 YGPTDALTGQPLDGKRSHGGLRLGEMEHWVLTAQGAMQTI 1164
Score = 108 bits (269), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 80/262 (30%), Positives = 124/262 (47%), Gaps = 23/262 (8%)
Query: 916 PYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHK 975
PY + Q R TY+ G+Q G ++ R+D + Y + P+V++ I + +
Sbjct: 787 PYANCTQPARVTYETNQGRQTGGWYCFSWPYRVDMNRFFQFYNEMPLVKT----IAHNYV 842
Query: 976 LPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRILG 1035
+P G N +A M Y GY+ ED++I++++ +DRG YR K L ++ G
Sbjct: 843 IPNGLNTIVAYMIYGGYNQEDSVIVSQSFIDRGGFAGTFYREEKVEL-----ESDIESFG 897
Query: 1036 ---PLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPE--- 1089
PL+ + KP + L DG V G + + +++ K V+ I E
Sbjct: 898 KPDPLITKNL-KPGANYEKL-VDGFVPVGTVVKKGDIIIGK------VAKIRGEKDELNK 949
Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
Y + V Y P+ ++ V+ D M LR R IGDK SSR G KG+ L
Sbjct: 950 YIDRSVMYGFDEPAVVDAVMRPHGPNDEIFGLMRLRYERNLNIGDKMSSRSGNKGIAALA 1009
Query: 1150 VEQEDMPFNESGICPDIIMNPH 1171
+ DMPF E G+ PD+I+NPH
Sbjct: 1010 LPTSDMPFTEDGLQPDLIVNPH 1031
Score = 35.0 bits (79), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 62/141 (43%), Gaps = 25/141 (17%)
Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRP---GVT---THLEIAPFTLLGVCA 741
G +D + +G E++ E + +A S + +R VT TH+++ P +LG+ A
Sbjct: 725 GTLTLEDLVAQGICEFITPEEAENCLVAFSITELRKHKHDVTRRFTHVDV-PQAILGLAA 783
Query: 742 GIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYA 801
+ PY + Q R TY+ G+Q G ++ R+D + Y
Sbjct: 784 LVS--------------PYANCTQPARVTYETNQGRQTGGWYCFSWPYRVDMNRFFQFYN 829
Query: 802 QRPMVESKTIRITNFHKLPAG 822
+ P+V++ I + + +P G
Sbjct: 830 EMPLVKT----IAHNYVIPNG 846
>sp|P0C8K2|RPB2_ASFK5 DNA-directed RNA polymerase subunit 2 OS=African swine fever virus
(isolate Pig/Kenya/KEN-50/1950) GN=Ken-065 PE=3 SV=1
Length = 1242
Score = 137 bits (346), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 82/220 (37%), Positives = 114/220 (51%), Gaps = 14/220 (6%)
Query: 1177 DRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKG 1236
D + +Y + V Y P+ ++ V+ D M LR R IGDK SSR G KG
Sbjct: 945 DELNKYIDRSVMYGFDEPAVVDAVMRPHGPNDEIFGLMRLRYERNLNIGDKMSSRSGNKG 1004
Query: 1237 VIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFG 1296
+ L + DMPF E G+ PD+I+NPH +PSRMT G++IE G A ++G +GTAF
Sbjct: 1005 IAALALPTSDMPFTEDGLQPDLIVNPHSHPSRMTNGQMIETTVGLANALQGVVTDGTAFL 1064
Query: 1297 GTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHA-RS 1355
+ + E L + G + G ++G TGE +A I+ GP Y+Q+L+ V D +A S
Sbjct: 1065 PINVQLLSERLAQEGLRFNGCQKMFNGQTGEYFDAAIFIGPTYHQRLQKFVLDDRYAVAS 1124
Query: 1356 RGPRVVLTRQP-TGRR------------WKLTFTPALCTI 1382
GP LT QP G+R W LT A+ TI
Sbjct: 1125 YGPTDALTGQPLDGKRSHGGLRLGEMEHWVLTAQGAMQTI 1164
Score = 108 bits (269), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 80/262 (30%), Positives = 124/262 (47%), Gaps = 23/262 (8%)
Query: 916 PYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHK 975
PY + Q R TY+ G+Q G ++ R+D + Y + P+V++ I + +
Sbjct: 787 PYANCTQPARVTYETNQGRQTGGWYCFSWPYRVDMNRFFQFYNEMPLVKT----IAHNYV 842
Query: 976 LPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRILG 1035
+P G N +A M Y GY+ ED++I++++ +DRG YR K L ++ G
Sbjct: 843 IPNGLNTIVAYMIYGGYNQEDSVIVSQSFIDRGGFAGTFYREEKVEL-----ESDIESFG 897
Query: 1036 ---PLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPE--- 1089
PL+ + KP + L DG V G + + +++ K V+ I E
Sbjct: 898 KPDPLITKNL-KPGANYEKL-VDGFVPVGTVVKKGDIIIGK------VAKIRGEKDELNK 949
Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
Y + V Y P+ ++ V+ D M LR R IGDK SSR G KG+ L
Sbjct: 950 YIDRSVMYGFDEPAVVDAVMRPHGPNDEIFGLMRLRYERNLNIGDKMSSRSGNKGIAALA 1009
Query: 1150 VEQEDMPFNESGICPDIIMNPH 1171
+ DMPF E G+ PD+I+NPH
Sbjct: 1010 LPTSDMPFTEDGLQPDLIVNPH 1031
Score = 35.4 bits (80), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 63/141 (44%), Gaps = 25/141 (17%)
Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRP---GVT---THLEIAPFTLLGVCA 741
G +D + +G E++ E + +A S + +R VT TH+++ P ++LG+ A
Sbjct: 725 GTLTLEDLVAQGICEFITPEEAENCLVAFSITELRKHKHDVTRRFTHVDV-PQSILGLAA 783
Query: 742 GIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYA 801
+ PY + Q R TY+ G+Q G ++ R+D + Y
Sbjct: 784 LVS--------------PYANCTQPARVTYETNQGRQTGGWYCFSWPYRVDMNRFFQFYN 829
Query: 802 QRPMVESKTIRITNFHKLPAG 822
+ P+V++ I + + +P G
Sbjct: 830 EMPLVKT----IAHNYVIPNG 846
>sp|P42487|RPB2_ASFB7 DNA-directed RNA polymerase subunit 2 OS=African swine fever virus
(strain Badajoz 1971 Vero-adapted) GN=Ba71V-053 PE=3 SV=1
Length = 1242
Score = 137 bits (346), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 82/220 (37%), Positives = 114/220 (51%), Gaps = 14/220 (6%)
Query: 1177 DRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKG 1236
D + +Y + V Y P+ ++ V+ D M LR R IGDK SSR G KG
Sbjct: 945 DELNKYIDRSVMYGFDEPAVVDAVMRPHGPNDEIFGLMRLRYERNLNIGDKMSSRSGNKG 1004
Query: 1237 VIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFG 1296
+ L + DMPF E G+ PD+I+NPH +PSRMT G++IE G A ++G +GTAF
Sbjct: 1005 IAALALPTSDMPFTEDGLQPDLIVNPHSHPSRMTNGQMIETTVGLANALQGVVTDGTAFL 1064
Query: 1297 GTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHA-RS 1355
+ + E L + G + G ++G TGE +A I+ GP Y+Q+L+ V D +A S
Sbjct: 1065 PINVQLLSERLAQEGLRFNGCQKMFNGQTGEYFDAAIFIGPTYHQRLQKFVLDDRYAVAS 1124
Query: 1356 RGPRVVLTRQP-TGRR------------WKLTFTPALCTI 1382
GP LT QP G+R W LT A+ TI
Sbjct: 1125 YGPTDALTGQPLDGKRSHGGLRLGEMEHWVLTAQGAMQTI 1164
Score = 108 bits (269), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 80/262 (30%), Positives = 124/262 (47%), Gaps = 23/262 (8%)
Query: 916 PYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHK 975
PY + Q R TY+ G+Q G ++ R+D + Y + P+V++ I + +
Sbjct: 787 PYANCTQPARVTYETNQGRQTGGWYCFSWPYRVDMNRFFQFYNEMPLVKT----IAHNYV 842
Query: 976 LPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRILG 1035
+P G N +A M Y GY+ ED++I++++ +DRG YR K L ++ G
Sbjct: 843 IPNGLNTIVAYMIYGGYNQEDSVIVSQSFIDRGGFAGTFYREEKVEL-----ESDIESFG 897
Query: 1036 ---PLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPE--- 1089
PL+ + KP + L DG V G + + +++ K V+ I E
Sbjct: 898 KPDPLITKNL-KPGANYEKL-VDGFVPVGTVVKKGDIIIGK------VAKIRGEKDELNK 949
Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
Y + V Y P+ ++ V+ D M LR R IGDK SSR G KG+ L
Sbjct: 950 YIDRSVMYGFDEPAVVDAVMRPHGPNDEIFGLMRLRYERNLNIGDKMSSRSGNKGIAALA 1009
Query: 1150 VEQEDMPFNESGICPDIIMNPH 1171
+ DMPF E G+ PD+I+NPH
Sbjct: 1010 LPTSDMPFTEDGLQPDLIVNPH 1031
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 524,463,202
Number of Sequences: 539616
Number of extensions: 23054709
Number of successful extensions: 54674
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 942
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 47124
Number of HSP's gapped (non-prelim): 6321
length of query: 1384
length of database: 191,569,459
effective HSP length: 130
effective length of query: 1254
effective length of database: 121,419,379
effective search space: 152259901266
effective search space used: 152259901266
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 68 (30.8 bits)