Your job contains 1 sequence.
>psy4067
MLAEEQKNSVGPHFSCSMTLKHHPIGTPGPAYIFFLLEGLQAILFLPLFKQVDFGDSKVV
SLRELLSHVTYQKRLYRLTVQPNWLGTVKAVHGTYLTMVTDETSKLKDSPEIRDKWKLVL
SFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGIADKIIPK
IKAAQFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTR
INSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKI
MYNIGIEHIAMFNGEELSSPGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHE
CRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKTEYTSSSRRAS
TSSVTMHSQRTSPLLSCKKLRQKRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAM
YLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELKETNLSGV
VNLVSGWWFELKYGNKIYIRSPSRKLLAAGFSGPHSGRVRLMPEGPTILLNSCLRSGGKA
QHEALYNAVQRHATKCCTLNFLFFLGGGGILPSIQRQTTCLLTLILFSLNGDGKRGARNS
QQYCDCPDGYSSGCQPRPTFLNMHQFLGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESG
IRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAM
GCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQISPGGAEELTARESC
HEVLKIISFSISVAVFDSVWLGDVKQGVHQLSEEKEPRLLRKFQYFDVRTPYRLRRLLCW
ECVLYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQR
PMVESKTIRITNFHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKC
VLKQYPNQTHDRILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISV
SAISMATPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRH
GQKGVIGLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKV
LVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIM
NPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIF
YSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWKLTFTPALC
TIRS
The BLAST search returned 4 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy4067
(1384 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0004463 - symbol:RpIII128 "RNA polymerase III 128k... 1031 7.5e-196 4
UNIPROTKB|E1BRJ4 - symbol:POLR3B "DNA-directed RNA polyme... 1070 1.3e-178 3
ZFIN|ZDB-GENE-030131-2887 - symbol:polr3b "polymerase (RN... 1064 1.5e-178 3
UNIPROTKB|E2RHZ2 - symbol:POLR3B "DNA-directed RNA polyme... 1067 5.6e-178 3
MGI|MGI:1917678 - symbol:Polr3b "polymerase (RNA) III (DN... 1068 6.1e-178 3
RGD|1565311 - symbol:Polr3b "polymerase (RNA) III (DNA di... 1068 6.1e-178 3
UNIPROTKB|E1BPX6 - symbol:POLR3B "Uncharacterized protein... 1067 7.8e-178 3
UNIPROTKB|Q9NW08 - symbol:POLR3B "DNA-directed RNA polyme... 1067 7.8e-178 3
WB|WBGene00017300 - symbol:rpc-2 species:6239 "Caenorhabd... 927 6.7e-173 4
GENEDB_PFALCIPARUM|PFL0330c - symbol:PFL0330c "DNA-direct... 1078 1.8e-163 4
UNIPROTKB|Q8I5X9 - symbol:PFL0330c "DNA-directed RNA poly... 1078 1.8e-163 4
POMBASE|SPAC4G9.08c - symbol:rpc2 "DNA-directed RNA polym... 856 6.6e-161 5
CGD|CAL0002357 - symbol:orf19.5847 species:5476 "Candida ... 857 3.9e-158 5
SGD|S000005733 - symbol:RET1 "Second-largest subunit of R... 837 1.4e-157 5
UNIPROTKB|F1SPQ0 - symbol:LOC100737037 "DNA-directed RNA ... 937 4.2e-154 2
DICTYBASE|DDB_G0288449 - symbol:rpc2 "RNA polymerase III,... 823 5.4e-147 5
ASPGD|ASPL0000054387 - symbol:AN0321 species:162425 "Emer... 790 8.5e-147 5
TAIR|locus:2153323 - symbol:NRPC2 "nuclear RNA polymerase... 747 9.4e-125 4
GENEDB_PFALCIPARUM|PFB0715w - symbol:PFB0715w "DNA-direct... 478 3.8e-91 4
UNIPROTKB|O96236 - symbol:PFB0715w "DNA-directed RNA poly... 478 3.8e-91 4
TAIR|locus:2119013 - symbol:NRPB2 species:3702 "Arabidops... 530 1.1e-86 4
UNIPROTKB|I3LGN1 - symbol:LOC100737037 "DNA-directed RNA ... 862 3.2e-86 2
WB|WBGene00016140 - symbol:rpb-2 species:6239 "Caenorhabd... 533 1.6e-84 4
DICTYBASE|DDB_G0288257 - symbol:rpb2 "RNA polymerase II c... 512 4.1e-84 4
UNIPROTKB|I3L6M3 - symbol:LOC100737037 "Uncharacterized p... 827 1.2e-81 1
ASPGD|ASPL0000039770 - symbol:AN9120 species:162425 "Emer... 529 1.4e-80 4
SGD|S000005677 - symbol:RPB2 "RNA polymerase II second la... 516 1.5e-80 4
UNIPROTKB|I3LGP4 - symbol:POLR2B "DNA-directed RNA polyme... 499 1.9e-80 4
UNIPROTKB|A5PJW8 - symbol:POLR2B "DNA-directed RNA polyme... 499 2.0e-80 4
UNIPROTKB|E2RNN5 - symbol:POLR2B "DNA-directed RNA polyme... 499 2.0e-80 4
UNIPROTKB|F1NCB0 - symbol:POLR2B "DNA-directed RNA polyme... 500 2.8e-80 4
UNIPROTKB|F1P4F2 - symbol:POLR2B "DNA-directed RNA polyme... 500 2.8e-80 4
UNIPROTKB|C9J2Y9 - symbol:POLR2B "DNA-directed RNA polyme... 501 8.9e-80 4
CGD|CAL0004145 - symbol:orf19.3349 species:5476 "Candida ... 521 9.2e-80 5
UNIPROTKB|Q5A8Y5 - symbol:RPB140 "DNA-directed RNA polyme... 521 9.2e-80 5
MGI|MGI:2388280 - symbol:Polr2b "polymerase (RNA) II (DNA... 502 9.3e-80 4
UNIPROTKB|P30876 - symbol:POLR2B "DNA-directed RNA polyme... 501 9.3e-80 4
RGD|1309477 - symbol:Polr2b "polymerase (RNA) II (DNA dir... 501 9.3e-80 4
POMBASE|SPAC23G3.01 - symbol:rpb2 "RNA polymerase II comp... 540 9.6e-79 4
ZFIN|ZDB-GENE-041008-1 - symbol:polr2b "polymerase (RNA) ... 474 9.8e-79 4
FB|FBgn0262955 - symbol:RpII140 "RNA polymerase II 140kD ... 468 3.0e-78 4
UNIPROTKB|C9J4M6 - symbol:POLR2B "DNA-directed RNA polyme... 501 4.3e-75 4
UNIPROTKB|F8VRE2 - symbol:POLR3B "DNA-directed RNA polyme... 594 1.1e-64 2
WB|WBGene00008781 - symbol:rpoa-2 species:6239 "Caenorhab... 384 3.4e-60 4
UNIPROTKB|F1NLV9 - symbol:F1NLV9 "DNA-directed RNA polyme... 412 2.2e-56 3
GENEDB_PFALCIPARUM|PF11_0358 - symbol:PF11_0358 "DNA-dire... 418 1.5e-54 4
UNIPROTKB|Q8II17 - symbol:PF11_0358 "DNA-directed RNA pol... 418 1.5e-54 4
CGD|CAL0002109 - symbol:RPA135 species:5476 "Candida albi... 436 6.7e-53 3
SGD|S000006214 - symbol:RPA135 "RNA polymerase I second l... 425 9.2e-53 3
UNIPROTKB|A6QLS0 - symbol:POLR1B "DNA-directed RNA polyme... 405 1.0e-52 4
UNIPROTKB|F5H643 - symbol:POLR1B "DNA-directed RNA polyme... 404 1.6e-52 4
FB|FBgn0003278 - symbol:RpI135 "RNA polymerase I 135kD su... 349 2.8e-52 4
POMBASE|SPBP23A10.07 - symbol:rpa2 "DNA-directed RNA poly... 431 5.7e-52 4
UNIPROTKB|Q9H9Y6 - symbol:POLR1B "DNA-directed RNA polyme... 404 9.0e-52 4
UNIPROTKB|F5GZX4 - symbol:POLR1B "DNA-directed RNA polyme... 404 1.1e-51 4
UNIPROTKB|E2REX8 - symbol:POLR1B "DNA-directed RNA polyme... 402 1.4e-51 4
ZFIN|ZDB-GENE-040426-1598 - symbol:polr1b "polymerase (RN... 402 2.9e-51 4
DICTYBASE|DDB_G0293560 - symbol:rpa2 "RNA polymerase I, s... 412 5.0e-51 4
TAIR|locus:2095233 - symbol:NRPD2A "nuclear RNA polymeras... 381 5.1e-51 4
UNIPROTKB|F1SUA2 - symbol:POLR1B "DNA-directed RNA polyme... 406 7.5e-51 4
ASPGD|ASPL0000012082 - symbol:AN3933 species:162425 "Emer... 415 9.8e-50 4
MGI|MGI:108014 - symbol:Polr1b "polymerase (RNA) I polype... 412 1.3e-49 4
UNIPROTKB|F8W898 - symbol:POLR1B "DNA-directed RNA polyme... 404 1.1e-48 4
RGD|620822 - symbol:Polr1b "polymerase (RNA) I polypeptid... 405 9.5e-48 4
UNIPROTKB|O54888 - symbol:Polr1b "DNA-directed RNA polyme... 405 9.5e-48 4
TAIR|locus:2019272 - symbol:NRPA2 "nuclear RNA polymerase... 355 2.1e-41 4
UNIPROTKB|I3LR52 - symbol:I3LR52 "Uncharacterized protein... 328 3.5e-28 1
UNIPROTKB|F1NRJ5 - symbol:F1NRJ5 "Uncharacterized protein... 262 1.3e-25 2
TIGR_CMR|CHY_2318 - symbol:CHY_2318 "DNA-directed RNA pol... 310 2.4e-25 4
UNIPROTKB|H7C0D9 - symbol:POLR1B "DNA-directed RNA polyme... 294 1.5e-24 1
TIGR_CMR|BA_0102 - symbol:BA_0102 "DNA-directed RNA polym... 301 3.5e-24 5
TIGR_CMR|CBU_0231 - symbol:CBU_0231 "DNA-directed RNA pol... 174 2.0e-23 5
UNIPROTKB|F8VRU2 - symbol:POLR3B "DNA-directed RNA polyme... 279 5.8e-23 1
TIGR_CMR|GSU_2863 - symbol:GSU_2863 "DNA-directed RNA pol... 171 1.3e-22 4
TIGR_CMR|SPO_3508 - symbol:SPO_3508 "DNA-directed RNA pol... 179 2.8e-22 4
TIGR_CMR|APH_1024 - symbol:APH_1024 "DNA-directed RNA pol... 155 3.1e-22 4
TIGR_CMR|SO_0224 - symbol:SO_0224 "DNA-directed RNA polym... 166 7.7e-22 5
UNIPROTKB|Q9KV30 - symbol:rpoB "DNA-directed RNA polymera... 174 8.8e-22 5
TIGR_CMR|VC_0328 - symbol:VC_0328 "DNA-directed RNA polym... 174 8.8e-22 5
TIGR_CMR|CPS_4769 - symbol:CPS_4769 "DNA-directed RNA pol... 173 1.2e-21 4
TIGR_CMR|CJE_0528 - symbol:CJE_0528 "DNA-directed RNA pol... 174 2.6e-21 5
UNIPROTKB|P60281 - symbol:rpoB "DNA-directed RNA polymera... 175 1.6e-20 4
UNIPROTKB|P0A680 - symbol:rpoB "DNA-directed RNA polymera... 177 2.5e-20 4
TIGR_CMR|NSE_0678 - symbol:NSE_0678 "DNA-directed RNA pol... 165 6.3e-20 4
UNIPROTKB|P0C501 - symbol:rpoB "DNA-directed RNA polymera... 249 1.0e-19 3
UNIPROTKB|P0C502 - symbol:rpoB "DNA-directed RNA polymera... 249 1.0e-19 3
UNIPROTKB|P0C503 - symbol:rpoB "DNA-directed RNA polymera... 249 1.0e-19 3
UNIPROTKB|Q6ENI4 - symbol:rpoB "DNA-directed RNA polymera... 249 1.0e-19 3
TIGR_CMR|DET_0603 - symbol:DET_0603 "DNA-directed RNA pol... 259 1.6e-19 4
UNIPROTKB|P0A8V2 - symbol:rpoB "RNA polymerase, beta subu... 179 5.5e-19 5
TIGR_CMR|ECH_0952 - symbol:ECH_0952 "DNA-directed RNA pol... 160 5.5e-18 5
UNIPROTKB|F8VRS3 - symbol:POLR3B "DNA-directed RNA polyme... 186 4.7e-13 1
UNIPROTKB|P21421 - symbol:rpoB "DNA-directed RNA polymera... 161 1.2e-07 2
>FB|FBgn0004463 [details] [associations]
symbol:RpIII128 "RNA polymerase III 128kD subunit"
species:7227 "Drosophila melanogaster" [GO:0006383 "transcription
from RNA polymerase III promoter" evidence=ISS;NAS] [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=ISS] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] [GO:0005634
"nucleus" evidence=NAS] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 EMBL:AE013599 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150 KO:K03021
EMBL:X58826 EMBL:AY121645 PIR:S16894 RefSeq:NP_523706.1
UniGene:Dm.2692 ProteinModelPortal:P25167 SMR:P25167 IntAct:P25167
MINT:MINT-285299 STRING:P25167 PaxDb:P25167
EnsemblMetazoa:FBtr0087977 GeneID:36289 KEGG:dme:Dmel_CG8344
CTD:36289 FlyBase:FBgn0004463 GeneTree:ENSGT00690000102214
InParanoid:P25167 OMA:DMIMNPH OrthoDB:EOG4C2FRC PhylomeDB:P25167
ChiTaRS:RpIII128 GenomeRNAi:36289 NextBio:797763 Bgee:P25167
GermOnline:CG8344 Uniprot:P25167
Length = 1137
Score = 1031 (368.0 bits), Expect = 6.9e-184, Sum P(3) = 6.9e-184
Identities = 189/263 (71%), Positives = 226/263 (85%)
Query: 913 GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
GLVPYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRID+LMYNLVY PMV+SKTI +TN
Sbjct: 677 GLVPYPHHNQSPRNTYQCAMGKQAMGMIGYNQKNRIDSLMYNLVYPHAPMVKSKTIELTN 736
Query: 973 FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
F KLPAGQNAT+AVMSYSGYDIEDALI+NKAS+DRG+GRCLVY+NSKC +K+Y NQT DR
Sbjct: 737 FDKLPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKRYANQTFDR 796
Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAIS--MATPE 1089
I+GP+ +A T K +++H LD DGIVAPGEQ+ +Q+++NK MP + S++ + A
Sbjct: 797 IMGPMKDALTNKVIFKHDVLDTDGIVAPGEQVQNKQIMINKEMPAVTSMNPLQGQSAQVP 856
Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
Y VP+SYKG PSY+E+V+VS+N+E+ FLIK+LLRQTR PEIGDKFSSRHGQKGV GLI
Sbjct: 857 YTAVPISYKGPEPSYIERVMVSANAEEDFLIKILLRQTRIPEIGDKFSSRHGQKGVTGLI 916
Query: 1150 VEQEDMPFNESGICPDIIMNPHG 1172
VEQEDMPFN+ GICPD+IMNPHG
Sbjct: 917 VEQEDMPFNDFGICPDMIMNPHG 939
Score = 801 (287.0 bits), Expect = 7.5e-196, Sum P(4) = 7.5e-196
Identities = 168/303 (55%), Positives = 211/303 (69%)
Query: 1079 SVSAISMATPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQT-------RRPE 1131
+V+ +S + + ++ + K S+ + LV NS+ +K QT +
Sbjct: 747 TVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCT--VKRYANQTFDRIMGPMKDA 804
Query: 1132 IGDKFSSRHGQKGVIGLIVEQEDMPFNESGI---CPDII-MNPHGLKGCDRITEYKEVPV 1187
+ +K +H G++ E + + I P + MNP L+G Y VP+
Sbjct: 805 LTNKVIFKHDVLDTDGIVAPGEQVQNKQIMINKEMPAVTSMNP--LQGQSAQVPYTAVPI 862
Query: 1188 SYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDM 1247
SYKG PSY+E+V+VS+N+E+ FLIK+LLRQTR PEIGDKFSSRHGQKGV GLIVEQEDM
Sbjct: 863 SYKGPEPSYIERVMVSANAEEDFLIKILLRQTRIPEIGDKFSSRHGQKGVTGLIVEQEDM 922
Query: 1248 PFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEEL 1307
PFN+ GICPD+IMNPHG+PSRMTVGK +ELL GKAGL+EG + GTAFGG+K+ D+Q EL
Sbjct: 923 PFNDFGICPDMIMNPHGFPSRMTVGKTLELLGGKAGLLEGKFHYGTAFGGSKVEDIQAEL 982
Query: 1308 IRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPT 1367
RHG+NY GKD FYSGITG LEAYIYSGPVYYQKLKHMVQDK+HAR+RGP+ VLTRQPT
Sbjct: 983 ERHGFNYVGKDFFYSGITGTPLEAYIYSGPVYYQKLKHMVQDKMHARARGPKAVLTRQPT 1042
Query: 1368 -GR 1369
GR
Sbjct: 1043 QGR 1045
Score = 579 (208.9 bits), Expect = 7.5e-196, Sum P(4) = 7.5e-196
Identities = 108/159 (67%), Positives = 131/159 (82%)
Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQ 244
QFD+V HMR IT L +AI +GNWTI+RFKMER GVTQVLSRLSYIS LGMMTR+NSQ
Sbjct: 406 QFDVVKHMRAAQITAGLESAISSGNWTIKRFKMERAGVTQVLSRLSYISALGMMTRVNSQ 465
Query: 245 FEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNI 304
FEKTRKVSGPRSLQ SQWGMLCPSDTPEGEACGLVKNLALMTHITTE +E+ ++ + +N
Sbjct: 466 FEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVEERPVMIVAFNA 525
Query: 305 GIEHIAMFNGEELSSPGVYLVFVNGILAGITCHHKEVCK 343
G+E I +G +++P V+LVF+NG + G+T +HK + +
Sbjct: 526 GVEDIREVSGNPINNPNVFLVFINGNVLGLTLNHKHLVR 564
Score = 454 (164.9 bits), Expect = 7.5e-196, Sum P(4) = 7.5e-196
Identities = 93/136 (68%), Positives = 103/136 (75%)
Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
G ++FDDFL +G IEYLDVNE NDS IA +E I TTHLEI PFTLLGVCAG
Sbjct: 624 GIRKFDDFLLDGLIEYLDVNEENDSFIAWNEDQIEDR-TTHLEIEPFTLLGVCAG----- 677
Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
LVPYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRID+LMYNLVY PMV+
Sbjct: 678 ---------LVPYPHHNQSPRNTYQCAMGKQAMGMIGYNQKNRIDSLMYNLVYPHAPMVK 728
Query: 808 SKTIRITNFHKLPAGK 823
SKTI +TNF KLPAG+
Sbjct: 729 SKTIELTNFDKLPAGQ 744
Score = 288 (106.4 bits), Expect = 7.5e-190, Sum P(5) = 7.5e-190
Identities = 57/96 (59%), Positives = 75/96 (78%)
Query: 439 KLRQKRFQTYK-KTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPD 497
KL KRFQ+ KTP ++AR+ L +T +AH+PV N +MKA+Y+++M+RR++ A D
Sbjct: 297 KLVVKRFQSATTKTPSEEARELLLTTILAHVPVDNFNLQMKAIYVSMMVRRVMAAELDKT 356
Query: 498 MLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
+ DDRDYYGNKRLELAGSLLS+MFED+FKR N ELK
Sbjct: 357 LFDDRDYYGNKRLELAGSLLSMMFEDLFKRMNWELK 392
Score = 268 (99.4 bits), Expect = 7.5e-190, Sum P(5) = 7.5e-190
Identities = 48/72 (66%), Positives = 61/72 (84%)
Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQ 400
V KP+I++ FN T+ TTPHECRLRD TYSAPITVDIEYTRG+QR+ R++L+IGRMP+ML+
Sbjct: 90 VGKPDIDDGFNITKATTPHECRLRDTTYSAPITVDIEYTRGTQRIKRNNLLIGRMPLMLR 149
Query: 401 SSKCVLRNKTEY 412
S C L K+E+
Sbjct: 150 CSNCALTGKSEF 161
Score = 212 (79.7 bits), Expect = 7.5e-196, Sum P(4) = 7.5e-196
Identities = 39/61 (63%), Positives = 51/61 (83%)
Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
+ +KWKLV +FL+ KGLVK HIDSF++FINV+IKK+++AN + S DPLFYLKYLD+ V
Sbjct: 31 LTEKWKLVPAFLQVKGLVKQHIDSFNHFINVDIKKIVKANELVTSGADPLFYLKYLDVRV 90
Query: 172 G 172
G
Sbjct: 91 G 91
Score = 44 (20.5 bits), Expect = 5.0e-68, Sum P(4) = 5.0e-68
Identities = 14/56 (25%), Positives = 23/56 (41%)
Query: 1116 DAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPH 1171
D FL+ L+ E D F + + + + E PF G+C ++ PH
Sbjct: 629 DDFLLDGLIEYLDVNEENDSFIAWNEDQ-IEDRTTHLEIEPFTLLGVCAGLVPYPH 683
Score = 44 (20.5 bits), Expect = 5.0e-68, Sum P(4) = 5.0e-68
Identities = 14/56 (25%), Positives = 23/56 (41%)
Query: 1208 DAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPH 1263
D FL+ L+ E D F + + + + E PF G+C ++ PH
Sbjct: 629 DDFLLDGLIEYLDVNEENDSFIAWNEDQ-IEDRTTHLEIEPFTLLGVCAGLVPYPH 683
Score = 40 (19.1 bits), Expect = 4.4e-147, Sum P(6) = 4.4e-147
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 705 DVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIE 744
D EG + V + +TT +E P ++ AG+E
Sbjct: 490 DTPEGEACGL-VKNLALMTHITTEVEERPVMIVAFNAGVE 528
Score = 37 (18.1 bits), Expect = 5.6e-152, Sum P(4) = 5.6e-152
Identities = 8/36 (22%), Positives = 18/36 (50%)
Query: 1019 KCVLKQYPNQTHDRILGPLLEADTRKPVYRHRALDQ 1054
+C+ Y + R+ P + + R+P+ + LD+
Sbjct: 588 RCI---YIHTDGGRLCRPYVIVENRRPLVKQHHLDE 620
>UNIPROTKB|E1BRJ4 [details] [associations]
symbol:POLR3B "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0032728 "positive
regulation of interferon-beta production" evidence=IEA] [GO:0045089
"positive regulation of innate immune response" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0045089
GO:GO:0003899 GO:GO:0032728 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03021 GeneTree:ENSGT00690000102214
OMA:DMIMNPH CTD:55703 EMBL:AADN02006293 EMBL:AADN02006294
EMBL:AADN02006295 IPI:IPI00580707 RefSeq:XP_416307.3
UniGene:Gga.54760 Ensembl:ENSGALT00000020649 GeneID:418071
KEGG:gga:418071 Uniprot:E1BRJ4
Length = 1132
Score = 1070 (381.7 bits), Expect = 1.5e-168, Sum P(2) = 1.5e-168
Identities = 193/264 (73%), Positives = 234/264 (88%)
Query: 913 GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
GL+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMY L Y Q+PMV++KTI + +
Sbjct: 669 GLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELID 728
Query: 973 FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
F KLPAGQNAT+AVMSYSGYDIEDAL++NKASLDRGFGRCLVY+N+KC LK+Y NQT D+
Sbjct: 729 FEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDK 788
Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT----P 1088
++GP+L+A TRKP++RH LD DGI +PGE++ +QVLVNKSMPT++ + + ++ P
Sbjct: 789 VMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQTPLEGSSVPQQP 848
Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
+YK+VPV+YKG+ SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GL
Sbjct: 849 QYKDVPVTYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGL 908
Query: 1149 IVEQEDMPFNESGICPDIIMNPHG 1172
IV QEDMPF ++GICPDIIMNPHG
Sbjct: 909 IVPQEDMPFCDTGICPDIIMNPHG 932
Score = 808 (289.5 bits), Expect = 1.3e-178, Sum P(3) = 1.3e-178
Identities = 157/221 (71%), Positives = 182/221 (82%)
Query: 1150 VEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDA 1209
VE + + N+S P + P + +YK+VPV+YKG+ SY+EKV++SSN+EDA
Sbjct: 820 VENKQVLVNKS--MPTVTQTPLEGSSVPQQPQYKDVPVTYKGATDSYIEKVMISSNAEDA 877
Query: 1210 FLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRM 1269
FLIKMLLRQTRRPEIGDKFSSRHGQKGV GLIV QEDMPF ++GICPDIIMNPHG+PSRM
Sbjct: 878 FLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDTGICPDIIMNPHGFPSRM 937
Query: 1270 TVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEAL 1329
TVGKLIELLAGKAG+++G + GTAFGG+K+ DV E+LIRHGYNY GKD SGITGE L
Sbjct: 938 TVGKLIELLAGKAGVLDGRFHYGTAFGGSKVKDVCEDLIRHGYNYLGKDYVTSGITGEPL 997
Query: 1330 EAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPT-GR 1369
EAYIY GPVYYQKLKHMV DK+HAR+RGPR VLTRQPT GR
Sbjct: 998 EAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGR 1038
Score = 591 (213.1 bits), Expect = 1.3e-178, Sum P(3) = 1.3e-178
Identities = 117/209 (55%), Positives = 150/209 (71%)
Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGXXXXXXXXXXXXQFDIVNHM 192
+D DY+ N ++ Q + ++ D+ F + I QFD+V HM
Sbjct: 350 VDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSELKKI----ADQVIPKQRAAQFDVVKHM 405
Query: 193 RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVS 252
RQD ITN + AI TGNW+++RFKM+RQGVTQVLSRLSYIS LGMMTRI+SQFEKTRKVS
Sbjct: 406 RQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVS 465
Query: 253 GPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMF 312
GPRSLQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT+ ++ ++K+ N+G+E + +
Sbjct: 466 GPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKLASNLGVEDVNLL 525
Query: 313 NGEELSSPGVYLVFVNGILAGITCHHKEV 341
GEELS P V+LVF+NG + G+ H+++
Sbjct: 526 CGEELSYPNVFLVFLNGNILGVIRDHQKL 554
Score = 442 (160.7 bits), Expect = 1.3e-178, Sum P(3) = 1.3e-178
Identities = 90/150 (60%), Positives = 107/150 (71%)
Query: 677 RPTFLNMHQ---FLGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAP 733
+P N H G++ F+DFL+EG +EYLDVNE ND +IA+ E I TTHLEI P
Sbjct: 602 KPAVTNKHMEELAQGYRNFEDFLHEGLVEYLDVNEENDCNIALYEHTINKD-TTHLEIEP 660
Query: 734 FTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDT 793
FTLLGVCAG L+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDT
Sbjct: 661 FTLLGVCAG--------------LIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDT 706
Query: 794 LMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
LMY L Y Q+PMV++KTI + +F KLPAG+
Sbjct: 707 LMYLLAYPQKPMVKTKTIELIDFEKLPAGQ 736
Score = 278 (102.9 bits), Expect = 1.6e-170, Sum P(4) = 1.6e-170
Identities = 63/111 (56%), Positives = 78/111 (70%)
Query: 303 NIGIEHIAMFNGEELSS---PGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPH 359
N+ I+ I N E+++S P YL ++N I G P++EESFN TR +PH
Sbjct: 52 NVEIKKIMKAN-EKVTSDADPMWYLKYLN-IYVGT---------PDVEESFNVTRPVSPH 100
Query: 360 ECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
ECRLRD+TYSAPITVDIEYTRGSQR++R+ L IGRMPIML+SS CVL KT
Sbjct: 101 ECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKT 151
Score = 271 (100.5 bits), Expect = 1.6e-170, Sum P(4) = 1.6e-170
Identities = 53/97 (54%), Positives = 74/97 (76%)
Query: 438 KKLRQKRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPD 497
K RQ+ + KKT +++AR+ L+ST + H+ V F+ K +Y AVM+RR++LA + +
Sbjct: 290 KVRRQRMWGGPKKTKMEEARELLASTILTHVLVKEFNFRAKCIYTAVMVRRVILAQGE-N 348
Query: 498 MLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELKE 534
+DDRDYYGNKRLELAG LLSL+FED+FK+FNSELK+
Sbjct: 349 KVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSELKK 385
Score = 226 (84.6 bits), Expect = 4.7e-165, Sum P(4) = 4.7e-165
Identities = 45/77 (58%), Positives = 59/77 (76%)
Query: 96 LTMVTDETSKLKDSPEIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIY 155
L VT E + S + +KW+L+ +FLK KGLVK HIDSF+YFINVEIKK+M+AN +
Sbjct: 8 LGAVTAERAAAPVSA-VEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVT 66
Query: 156 SDVDPLFYLKYLDIHVG 172
SD DP++YLKYL+I+VG
Sbjct: 67 SDADPMWYLKYLNIYVG 83
Score = 41 (19.5 bits), Expect = 7.0e-137, Sum P(4) = 7.0e-137
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 1156 PFNESGICPDIIMNPH 1171
PF G+C +I PH
Sbjct: 660 PFTLLGVCAGLIPYPH 675
Score = 41 (19.5 bits), Expect = 9.9e-52, Sum P(3) = 9.9e-52
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 1248 PFNESGICPDIIMNPH 1263
PF G+C +I PH
Sbjct: 660 PFTLLGVCAGLIPYPH 675
Score = 39 (18.8 bits), Expect = 7.0e-137, Sum P(4) = 7.0e-137
Identities = 6/23 (26%), Positives = 13/23 (56%)
Query: 1057 IVAPGEQICERQVLVNKSMPTIS 1079
I + G ++C ++V K P ++
Sbjct: 584 ISSDGGRLCRPYIIVKKQKPAVT 606
Score = 37 (18.1 bits), Expect = 4.2e-52, Sum P(2) = 4.2e-52
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 339 KEVCKPEIEESFNY 352
K+VC+ I +NY
Sbjct: 969 KDVCEDLIRHGYNY 982
>ZFIN|ZDB-GENE-030131-2887 [details] [associations]
symbol:polr3b "polymerase (RNA) III (DNA directed)
polypeptide B" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0031017 "exocrine pancreas development" evidence=IMP]
[GO:0048565 "digestive tract development" evidence=IMP] [GO:0009304
"tRNA transcription" evidence=IMP] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 ZFIN:ZDB-GENE-030131-2887
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
GeneTree:ENSGT00690000102214 EMBL:BX465207 IPI:IPI00505191
Ensembl:ENSDART00000091466 ArrayExpress:F1QQA2 Bgee:F1QQA2
Uniprot:F1QQA2
Length = 1129
Score = 1064 (379.6 bits), Expect = 8.0e-168, Sum P(2) = 8.0e-168
Identities = 193/265 (72%), Positives = 234/265 (88%)
Query: 913 GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
GL+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMY L Y QRPMV++KTI + +
Sbjct: 665 GLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQRPMVKTKTIELID 724
Query: 973 FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
F KLPAGQNAT+AVMSYSGYDIEDAL++NKASLDRGFGRCLVY+N+KC L++Y NQT D+
Sbjct: 725 FEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLRRYTNQTFDK 784
Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPG-EQICERQVLVNKSMPTISVSAISMAT---- 1087
++GP+L+A+TRKP++RH LD DGI +PG E++ +QVLVNKSMPT++ + + +
Sbjct: 785 VMGPMLDAETRKPIWRHSILDADGICSPGSEKVENKQVLVNKSMPTVTQTPLEGSAQPGQ 844
Query: 1088 PEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
P+Y+EVPVSYKG+ SY+EKV++SSN+EDAFL+K+LLRQTRRPEIGDKFSSRHGQKGV G
Sbjct: 845 PQYREVPVSYKGATDSYIEKVMISSNAEDAFLVKILLRQTRRPEIGDKFSSRHGQKGVCG 904
Query: 1148 LIVEQEDMPFNESGICPDIIMNPHG 1172
LIV QEDMPF +SGICPDIIMNPHG
Sbjct: 905 LIVPQEDMPFCDSGICPDIIMNPHG 929
Score = 812 (290.9 bits), Expect = 1.5e-178, Sum P(3) = 1.5e-178
Identities = 167/257 (64%), Positives = 196/257 (76%)
Query: 1116 DAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGLKG 1175
D + ML +TR+P G VE + + N+S P + P L+G
Sbjct: 783 DKVMGPMLDAETRKPIWRHSILDADGICSPGSEKVENKQVLVNKS--MPTVTQTP--LEG 838
Query: 1176 CDRI--TEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
+ +Y+EVPVSYKG+ SY+EKV++SSN+EDAFL+K+LLRQTRRPEIGDKFSSRHG
Sbjct: 839 SAQPGQPQYREVPVSYKGATDSYIEKVMISSNAEDAFLVKILLRQTRRPEIGDKFSSRHG 898
Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGT 1293
QKGV GLIV QEDMPF +SGICPDIIMNPHGYPSRMTVGKLIELLAGKAG+++G + GT
Sbjct: 899 QKGVCGLIVPQEDMPFCDSGICPDIIMNPHGYPSRMTVGKLIELLAGKAGVLDGRFHYGT 958
Query: 1294 AFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHA 1353
AFGG+K+ DV E+LIR+GYNYQGKD SGITGE LEAYIY GPVYYQKLKHMV DK+HA
Sbjct: 959 AFGGSKVKDVCEDLIRYGYNYQGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHA 1018
Query: 1354 RSRGPRVVLTRQPT-GR 1369
R+RGPR VLTRQPT GR
Sbjct: 1019 RARGPRAVLTRQPTEGR 1035
Score = 590 (212.7 bits), Expect = 1.5e-178, Sum P(3) = 1.5e-178
Identities = 116/209 (55%), Positives = 151/209 (72%)
Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGXXXXXXXXXXXXQFDIVNHM 192
+D DY+ N ++ Q + ++ D+ F + I QFD+V HM
Sbjct: 346 VDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSELKKI----ADQIIPKQRAAQFDVVKHM 401
Query: 193 RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVS 252
RQD ITN + AI TGNW+++RFKM+RQGVTQVLSRLS+IS LGMMTRI+SQFEKTRKVS
Sbjct: 402 RQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSFISALGMMTRISSQFEKTRKVS 461
Query: 253 GPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMF 312
GPRSLQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT+ ++ ++K+ +N+G+E + +
Sbjct: 462 GPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKLAFNLGVEDVNLL 521
Query: 313 NGEELSSPGVYLVFVNGILAGITCHHKEV 341
GEELS P V+LVF+NG + G+ H+++
Sbjct: 522 CGEELSYPTVFLVFLNGNILGVIRDHQKL 550
Score = 435 (158.2 bits), Expect = 1.5e-178, Sum P(3) = 1.5e-178
Identities = 91/150 (60%), Positives = 108/150 (72%)
Query: 677 RPTFLNMH-QFL--GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAP 733
+P N H + L G++ F+DFL+E +EYLDVNE ND +IA+ E I TTHLEI P
Sbjct: 598 KPAVKNKHIEELSQGYRTFEDFLHESLVEYLDVNEENDCNIALYEHMISKD-TTHLEIEP 656
Query: 734 FTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDT 793
FTLLGVCAG L+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDT
Sbjct: 657 FTLLGVCAG--------------LIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDT 702
Query: 794 LMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
LMY L Y QRPMV++KTI + +F KLPAG+
Sbjct: 703 LMYLLAYPQRPMVKTKTIELIDFEKLPAGQ 732
Score = 281 (104.0 bits), Expect = 6.9e-171, Sum P(4) = 6.9e-171
Identities = 63/111 (56%), Positives = 79/111 (71%)
Query: 303 NIGIEHIAMFNGEELSS---PGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPH 359
N+ I+ I N E+++S P YL ++N I G+ P++EESFN TR +PH
Sbjct: 52 NVEIKKIMKAN-EKITSDADPMWYLKYLN-IYVGM---------PDVEESFNVTRPVSPH 100
Query: 360 ECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
ECRLRD+TYSAPITVDIEYTRGSQR++R+ L IGRMPIML+SS CVL KT
Sbjct: 101 ECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKT 151
Score = 270 (100.1 bits), Expect = 6.9e-171, Sum P(4) = 6.9e-171
Identities = 50/82 (60%), Positives = 68/82 (82%)
Query: 453 VDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLEL 512
+++AR+ L+ST + H+PV F+ K +YLAVM+RR++LA D + +DDRDYYGNKRLEL
Sbjct: 301 MEEARELLASTILTHVPVKEFNFRAKCIYLAVMVRRVILAQGD-NKVDDRDYYGNKRLEL 359
Query: 513 AGSLLSLMFEDVFKRFNSELKE 534
AG LLSL+FED+FK+FNSELK+
Sbjct: 360 AGQLLSLLFEDLFKKFNSELKK 381
Score = 229 (85.7 bits), Expect = 2.1e-165, Sum P(4) = 2.1e-165
Identities = 42/61 (68%), Positives = 53/61 (86%)
Query: 112 IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHV 171
+ +KWKL+ +FLK KGLVK HIDSF+YFINVEIKK+M+AN I SD DP++YLKYL+I+V
Sbjct: 23 VEEKWKLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKITSDADPMWYLKYLNIYV 82
Query: 172 G 172
G
Sbjct: 83 G 83
Score = 44 (20.5 bits), Expect = 2.5e-137, Sum P(3) = 2.5e-137
Identities = 16/76 (21%), Positives = 30/76 (39%)
Query: 1057 IVAPGEQICERQVLVNKSMPTISVSAISMATPEYKEVPVSYKGSVPSYLEKVLVSSNSED 1116
I + G ++C ++V P + I + Y+ S+ YL+ V ++
Sbjct: 580 ISSDGGRLCRPYIIVKNGKPAVKNKHIEELSQGYRTFEDFLHESLVEYLD-VNEENDCNI 638
Query: 1117 AFLIKMLLRQTRRPEI 1132
A M+ + T EI
Sbjct: 639 ALYEHMISKDTTHLEI 654
Score = 41 (19.5 bits), Expect = 3.8e-52, Sum P(3) = 3.8e-52
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 1156 PFNESGICPDIIMNPH 1171
PF G+C +I PH
Sbjct: 656 PFTLLGVCAGLIPYPH 671
Score = 41 (19.5 bits), Expect = 3.8e-52, Sum P(3) = 3.8e-52
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 1248 PFNESGICPDIIMNPH 1263
PF G+C +I PH
Sbjct: 656 PFTLLGVCAGLIPYPH 671
Score = 38 (18.4 bits), Expect = 3.5e-104, Sum P(3) = 3.5e-104
Identities = 12/70 (17%), Positives = 33/70 (47%)
Query: 1054 QDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKEVPVSYKGSVPSYLEKVLVSSN 1113
Q+ ++ EQ+ + +++V++ ++++ +T E K YL+ +S +
Sbjct: 174 QEKVILIQEQLSKNRIIVDQDRKGTVGASVTSSTHEKKSRTNMIVKQGRFYLKHNTLSED 233
Query: 1114 SEDAFLIKML 1123
+ A + K +
Sbjct: 234 APIAIIFKAM 243
>UNIPROTKB|E2RHZ2 [details] [associations]
symbol:POLR3B "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0045089 "positive regulation of innate
immune response" evidence=IEA] [GO:0032728 "positive regulation of
interferon-beta production" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0032549 "ribonucleoside
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0045089
GO:GO:0003899 GO:GO:0032728 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03021 GeneTree:ENSGT00690000102214
OMA:DMIMNPH CTD:55703 EMBL:AAEX03007377 RefSeq:XP_531760.2
Ensembl:ENSCAFT00000002941 GeneID:474531 KEGG:cfa:474531
NextBio:20850526 Uniprot:E2RHZ2
Length = 1133
Score = 1067 (380.7 bits), Expect = 1.5e-168, Sum P(2) = 1.5e-168
Identities = 193/264 (73%), Positives = 231/264 (87%)
Query: 913 GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
GL+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMY L Y Q+PMV++KTI +
Sbjct: 670 GLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIE 729
Query: 973 FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
F KLPAGQNAT+AVMSYSGYDIEDAL++NKASLDRGFGRCLVY+N+KC LK+Y NQT D+
Sbjct: 730 FEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDK 789
Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT----P 1088
++GP+L+A TRKP++RH LD DGI +PGE++ +QVLVNKSMPT++ + + P
Sbjct: 790 VMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQP 849
Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
+YK+VP++YKG+ SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GL
Sbjct: 850 QYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGL 909
Query: 1149 IVEQEDMPFNESGICPDIIMNPHG 1172
IV QEDMPF +SGICPDIIMNPHG
Sbjct: 910 IVPQEDMPFCDSGICPDIIMNPHG 933
Score = 807 (289.1 bits), Expect = 5.6e-178, Sum P(3) = 5.6e-178
Identities = 156/221 (70%), Positives = 182/221 (82%)
Query: 1150 VEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDA 1209
VE + + N+S P + P + +YK+VP++YKG+ SY+EKV++SSN+EDA
Sbjct: 821 VENKQVLVNKS--MPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAEDA 878
Query: 1210 FLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRM 1269
FLIKMLLRQTRRPEIGDKFSSRHGQKGV GLIV QEDMPF +SGICPDIIMNPHG+PSRM
Sbjct: 879 FLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRM 938
Query: 1270 TVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEAL 1329
TVGKLIELLAGKAG+++G + GTAFGG+K+ DV E+L+RHGYNY GKD SGITGE L
Sbjct: 939 TVGKLIELLAGKAGVLDGRFHYGTAFGGSKVKDVCEDLVRHGYNYLGKDFVTSGITGEPL 998
Query: 1330 EAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPT-GR 1369
EAYIY GPVYYQKLKHMV DK+HAR+RGPR VLTRQPT GR
Sbjct: 999 EAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGR 1039
Score = 594 (214.2 bits), Expect = 5.6e-178, Sum P(3) = 5.6e-178
Identities = 118/209 (56%), Positives = 150/209 (71%)
Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGXXXXXXXXXXXXQFDIVNHM 192
+D DY+ N ++ Q + ++ D+ F + I QFD+V HM
Sbjct: 351 VDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKI----ADQVIPKQRAAQFDVVKHM 406
Query: 193 RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVS 252
RQD ITN + AI TGNW+++RFKM+RQGVTQVLSRLSYIS LGMMTRI+SQFEKTRKVS
Sbjct: 407 RQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVS 466
Query: 253 GPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMF 312
GPRSLQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT+ ++ ++K+ N+G+E + +
Sbjct: 467 GPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLL 526
Query: 313 NGEELSSPGVYLVFVNGILAGITCHHKEV 341
GEELS P V+LVF+NG + G+ HK++
Sbjct: 527 CGEELSYPNVFLVFLNGNILGVIRDHKKL 555
Score = 435 (158.2 bits), Expect = 5.6e-178, Sum P(3) = 5.6e-178
Identities = 89/150 (59%), Positives = 105/150 (70%)
Query: 677 RPTFLNMHQ---FLGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAP 733
+P N H G++ F+DFL+E +EYLDVNE ND +IA+ E I TTHLEI P
Sbjct: 603 KPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKD-TTHLEIEP 661
Query: 734 FTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDT 793
FTLLGVCAG L+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDT
Sbjct: 662 FTLLGVCAG--------------LIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDT 707
Query: 794 LMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
LMY L Y Q+PMV++KTI + F KLPAG+
Sbjct: 708 LMYLLAYPQKPMVKTKTIELIEFEKLPAGQ 737
Score = 281 (104.0 bits), Expect = 1.1e-170, Sum P(4) = 1.1e-170
Identities = 63/111 (56%), Positives = 79/111 (71%)
Query: 303 NIGIEHIAMFNGEELSS---PGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPH 359
N+ I+ I N E+++S P YL ++N I G+ P++EESFN TR +PH
Sbjct: 52 NVEIKKIMKAN-EKVTSDADPMWYLKYLN-IYVGL---------PDVEESFNVTRPVSPH 100
Query: 360 ECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
ECRLRD+TYSAPITVDIEYTRGSQR++R+ L IGRMPIML+SS CVL KT
Sbjct: 101 ECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKT 151
Score = 279 (103.3 bits), Expect = 1.1e-170, Sum P(4) = 1.1e-170
Identities = 51/86 (59%), Positives = 70/86 (81%)
Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
KKT +++AR+ L+ST + H+PV F+ K +Y AVM+RR++LA D + +DDRDYYGNK
Sbjct: 302 KKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQGD-NKVDDRDYYGNK 360
Query: 509 RLELAGSLLSLMFEDVFKRFNSELKE 534
RLELAG LLSL+FED+FK+FNSE+K+
Sbjct: 361 RLELAGQLLSLLFEDLFKKFNSEMKK 386
Score = 231 (86.4 bits), Expect = 2.0e-165, Sum P(4) = 2.0e-165
Identities = 41/63 (65%), Positives = 54/63 (85%)
Query: 110 PEIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDI 169
P + +KW+L+ +FLK KGLVK HIDSF+YFINVEIKK+M+AN + SD DP++YLKYL+I
Sbjct: 21 PTVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMWYLKYLNI 80
Query: 170 HVG 172
+VG
Sbjct: 81 YVG 83
Score = 43 (20.2 bits), Expect = 2.3e-137, Sum P(4) = 2.3e-137
Identities = 10/50 (20%), Positives = 21/50 (42%)
Query: 1057 IVAPGEQICERQVLVNKSMPTISVSAISMATPEYKEVPVSYKGSVPSYLE 1106
I + G ++C ++V K P ++ + Y+ S+ YL+
Sbjct: 585 ISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLD 634
Score = 41 (19.5 bits), Expect = 2.3e-137, Sum P(4) = 2.3e-137
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 1156 PFNESGICPDIIMNPH 1171
PF G+C +I PH
Sbjct: 661 PFTLLGVCAGLIPYPH 676
Score = 41 (19.5 bits), Expect = 1.8e-52, Sum P(3) = 1.8e-52
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 1248 PFNESGICPDIIMNPH 1263
PF G+C +I PH
Sbjct: 661 PFTLLGVCAGLIPYPH 676
>MGI|MGI:1917678 [details] [associations]
symbol:Polr3b "polymerase (RNA) III (DNA directed)
polypeptide B" species:10090 "Mus musculus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0032728 "positive
regulation of interferon-beta production" evidence=ISO] [GO:0045087
"innate immune response" evidence=IEA] [GO:0045089 "positive
regulation of innate immune response" evidence=ISO] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0051607 "defense response to
virus" evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 MGI:MGI:1917678 PANTHER:PTHR20856 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0045087 GO:GO:0006351
GO:GO:0051607 GO:GO:0045089 GO:GO:0003899 GO:GO:0032728
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000222962 HOVERGEN:HBG017744 KO:K03021
GeneTree:ENSGT00690000102214 OMA:DMIMNPH CTD:55703
OrthoDB:EOG49ZXND EMBL:BC044796 EMBL:BC068143 EMBL:AK039366
IPI:IPI00410871 RefSeq:NP_081699.1 UniGene:Mm.335007
ProteinModelPortal:P59470 STRING:P59470 PhosphoSite:P59470
PaxDb:P59470 PRIDE:P59470 Ensembl:ENSMUST00000077175 GeneID:70428
KEGG:mmu:70428 UCSC:uc007gku.1 InParanoid:P59470 NextBio:331603
Bgee:P59470 CleanEx:MM_POLR3B Genevestigator:P59470
GermOnline:ENSMUSG00000034453 Uniprot:P59470
Length = 1133
Score = 1068 (381.0 bits), Expect = 1.1e-168, Sum P(2) = 1.1e-168
Identities = 193/264 (73%), Positives = 232/264 (87%)
Query: 913 GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
GL+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMY L Y Q+PMV++KTI + +
Sbjct: 670 GLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELID 729
Query: 973 FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
F KLPAGQNAT+AVMSYSGYDIEDAL++NKASLDRGFGRCLVY+N+KC LK+Y NQT D+
Sbjct: 730 FEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDK 789
Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT----P 1088
++GP+L+A TRKP++RH LD DGI +PGE++ +QVLVNKSMPT++ + + P
Sbjct: 790 VMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQP 849
Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
+YK+VP++YKG+ SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GL
Sbjct: 850 QYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGL 909
Query: 1149 IVEQEDMPFNESGICPDIIMNPHG 1172
IV QEDMPF +SGICPDIIMNPHG
Sbjct: 910 IVPQEDMPFCDSGICPDIIMNPHG 933
Score = 806 (288.8 bits), Expect = 6.1e-178, Sum P(3) = 6.1e-178
Identities = 156/221 (70%), Positives = 182/221 (82%)
Query: 1150 VEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDA 1209
VE + + N+S P + P + +YK+VP++YKG+ SY+EKV++SSN+EDA
Sbjct: 821 VENKQVLVNKS--MPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAEDA 878
Query: 1210 FLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRM 1269
FLIKMLLRQTRRPEIGDKFSSRHGQKGV GLIV QEDMPF +SGICPDIIMNPHG+PSRM
Sbjct: 879 FLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRM 938
Query: 1270 TVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEAL 1329
TVGKLIELLAGKAG+++G + GTAFGG+K+ DV E+L+RHGYNY GKD SGITGE L
Sbjct: 939 TVGKLIELLAGKAGVLDGRFHYGTAFGGSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPL 998
Query: 1330 EAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPT-GR 1369
EAYIY GPVYYQKLKHMV DK+HAR+RGPR VLTRQPT GR
Sbjct: 999 EAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGR 1039
Score = 594 (214.2 bits), Expect = 6.1e-178, Sum P(3) = 6.1e-178
Identities = 118/209 (56%), Positives = 150/209 (71%)
Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGXXXXXXXXXXXXQFDIVNHM 192
+D DY+ N ++ Q + ++ D+ F + I QFD+V HM
Sbjct: 351 VDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKI----ADQVIPKQRAAQFDVVKHM 406
Query: 193 RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVS 252
RQD ITN + AI TGNW+++RFKM+RQGVTQVLSRLSYIS LGMMTRI+SQFEKTRKVS
Sbjct: 407 RQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVS 466
Query: 253 GPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMF 312
GPRSLQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT+ ++ ++K+ N+G+E + +
Sbjct: 467 GPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKLAGNLGVEDVNLL 526
Query: 313 NGEELSSPGVYLVFVNGILAGITCHHKEV 341
GEELS P V+LVF+NG + G+ HK++
Sbjct: 527 CGEELSYPNVFLVFLNGNILGVIRDHKKL 555
Score = 436 (158.5 bits), Expect = 6.1e-178, Sum P(3) = 6.1e-178
Identities = 89/150 (59%), Positives = 106/150 (70%)
Query: 677 RPTFLNMHQ---FLGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAP 733
+P N H G++ F+DFL+E +EYLDVNE ND +IA+ E I TTHLEI P
Sbjct: 603 KPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKD-TTHLEIEP 661
Query: 734 FTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDT 793
FTLLGVCAG L+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDT
Sbjct: 662 FTLLGVCAG--------------LIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDT 707
Query: 794 LMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
LMY L Y Q+PMV++KTI + +F KLPAG+
Sbjct: 708 LMYLLAYPQKPMVKTKTIELIDFEKLPAGQ 737
Score = 281 (104.0 bits), Expect = 1.2e-170, Sum P(4) = 1.2e-170
Identities = 63/111 (56%), Positives = 79/111 (71%)
Query: 303 NIGIEHIAMFNGEELSS---PGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPH 359
N+ I+ I N E+++S P YL ++N I G+ P++EESFN TR +PH
Sbjct: 52 NVEIKKIMKAN-EKVTSDADPMWYLKYLN-IYVGL---------PDVEESFNVTRPVSPH 100
Query: 360 ECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
ECRLRD+TYSAPITVDIEYTRGSQR++R+ L IGRMPIML+SS CVL KT
Sbjct: 101 ECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKT 151
Score = 279 (103.3 bits), Expect = 1.2e-170, Sum P(4) = 1.2e-170
Identities = 51/86 (59%), Positives = 70/86 (81%)
Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
KKT +++AR+ L+ST + H+PV F+ K +Y AVM+RR++LA D + +DDRDYYGNK
Sbjct: 302 KKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQGD-NKVDDRDYYGNK 360
Query: 509 RLELAGSLLSLMFEDVFKRFNSELKE 534
RLELAG LLSL+FED+FK+FNSE+K+
Sbjct: 361 RLELAGQLLSLLFEDLFKKFNSEMKK 386
Score = 231 (86.4 bits), Expect = 2.2e-165, Sum P(4) = 2.2e-165
Identities = 41/63 (65%), Positives = 54/63 (85%)
Query: 110 PEIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDI 169
P + +KW+L+ +FLK KGLVK HIDSF+YFINVEIKK+M+AN + SD DP++YLKYL+I
Sbjct: 21 PTVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMWYLKYLNI 80
Query: 170 HVG 172
+VG
Sbjct: 81 YVG 83
Score = 43 (20.2 bits), Expect = 3.3e-137, Sum P(4) = 3.3e-137
Identities = 10/50 (20%), Positives = 21/50 (42%)
Query: 1057 IVAPGEQICERQVLVNKSMPTISVSAISMATPEYKEVPVSYKGSVPSYLE 1106
I + G ++C ++V K P ++ + Y+ S+ YL+
Sbjct: 585 ISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLD 634
Score = 41 (19.5 bits), Expect = 3.3e-137, Sum P(4) = 3.3e-137
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 1156 PFNESGICPDIIMNPH 1171
PF G+C +I PH
Sbjct: 661 PFTLLGVCAGLIPYPH 676
Score = 41 (19.5 bits), Expect = 1.8e-52, Sum P(3) = 1.8e-52
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 1248 PFNESGICPDIIMNPH 1263
PF G+C +I PH
Sbjct: 661 PFTLLGVCAGLIPYPH 676
>RGD|1565311 [details] [associations]
symbol:Polr3b "polymerase (RNA) III (DNA directed) polypeptide
B" species:10116 "Rattus norvegicus" [GO:0003674
"molecular_function" evidence=ND] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0032728 "positive
regulation of interferon-beta production" evidence=IEA;ISO]
[GO:0045089 "positive regulation of innate immune response"
evidence=IEA;ISO] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 RGD:1565311 PANTHER:PTHR20856 GO:GO:0003677
GO:GO:0006351 GO:GO:0045089 GO:GO:0003899 GO:GO:0032728
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150 KO:K03021
GeneTree:ENSGT00690000102214 OMA:DMIMNPH CTD:55703
OrthoDB:EOG49ZXND IPI:IPI00365981 RefSeq:NP_001178807.1
UniGene:Rn.37546 Ensembl:ENSRNOT00000009746 GeneID:362858
KEGG:rno:362858 UCSC:RGD:1565311 NextBio:681550 Uniprot:D3ZV30
Length = 1133
Score = 1068 (381.0 bits), Expect = 1.1e-168, Sum P(2) = 1.1e-168
Identities = 193/264 (73%), Positives = 232/264 (87%)
Query: 913 GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
GL+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMY L Y Q+PMV++KTI + +
Sbjct: 670 GLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELID 729
Query: 973 FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
F KLPAGQNAT+AVMSYSGYDIEDAL++NKASLDRGFGRCLVY+N+KC LK+Y NQT D+
Sbjct: 730 FEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDK 789
Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT----P 1088
++GP+L+A TRKP++RH LD DGI +PGE++ +QVLVNKSMPT++ + + P
Sbjct: 790 VMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQP 849
Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
+YK+VP++YKG+ SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GL
Sbjct: 850 QYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGL 909
Query: 1149 IVEQEDMPFNESGICPDIIMNPHG 1172
IV QEDMPF +SGICPDIIMNPHG
Sbjct: 910 IVPQEDMPFCDSGICPDIIMNPHG 933
Score = 806 (288.8 bits), Expect = 6.1e-178, Sum P(3) = 6.1e-178
Identities = 156/221 (70%), Positives = 182/221 (82%)
Query: 1150 VEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDA 1209
VE + + N+S P + P + +YK+VP++YKG+ SY+EKV++SSN+EDA
Sbjct: 821 VENKQVLVNKS--MPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAEDA 878
Query: 1210 FLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRM 1269
FLIKMLLRQTRRPEIGDKFSSRHGQKGV GLIV QEDMPF +SGICPDIIMNPHG+PSRM
Sbjct: 879 FLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRM 938
Query: 1270 TVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEAL 1329
TVGKLIELLAGKAG+++G + GTAFGG+K+ DV E+L+RHGYNY GKD SGITGE L
Sbjct: 939 TVGKLIELLAGKAGVLDGRFHYGTAFGGSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPL 998
Query: 1330 EAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPT-GR 1369
EAYIY GPVYYQKLKHMV DK+HAR+RGPR VLTRQPT GR
Sbjct: 999 EAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGR 1039
Score = 594 (214.2 bits), Expect = 6.1e-178, Sum P(3) = 6.1e-178
Identities = 118/209 (56%), Positives = 150/209 (71%)
Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGXXXXXXXXXXXXQFDIVNHM 192
+D DY+ N ++ Q + ++ D+ F + I QFD+V HM
Sbjct: 351 VDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKI----ADQVIPKQRAAQFDVVKHM 406
Query: 193 RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVS 252
RQD ITN + AI TGNW+++RFKM+RQGVTQVLSRLSYIS LGMMTRI+SQFEKTRKVS
Sbjct: 407 RQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVS 466
Query: 253 GPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMF 312
GPRSLQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT+ ++ ++K+ N+G+E + +
Sbjct: 467 GPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKLAGNLGVEDVNLL 526
Query: 313 NGEELSSPGVYLVFVNGILAGITCHHKEV 341
GEELS P V+LVF+NG + G+ HK++
Sbjct: 527 CGEELSYPNVFLVFLNGNILGVIRDHKKL 555
Score = 436 (158.5 bits), Expect = 6.1e-178, Sum P(3) = 6.1e-178
Identities = 89/150 (59%), Positives = 106/150 (70%)
Query: 677 RPTFLNMHQ---FLGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAP 733
+P N H G++ F+DFL+E +EYLDVNE ND +IA+ E I TTHLEI P
Sbjct: 603 KPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKD-TTHLEIEP 661
Query: 734 FTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDT 793
FTLLGVCAG L+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDT
Sbjct: 662 FTLLGVCAG--------------LIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDT 707
Query: 794 LMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
LMY L Y Q+PMV++KTI + +F KLPAG+
Sbjct: 708 LMYLLAYPQKPMVKTKTIELIDFEKLPAGQ 737
Score = 281 (104.0 bits), Expect = 1.2e-170, Sum P(4) = 1.2e-170
Identities = 63/111 (56%), Positives = 79/111 (71%)
Query: 303 NIGIEHIAMFNGEELSS---PGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPH 359
N+ I+ I N E+++S P YL ++N I G+ P++EESFN TR +PH
Sbjct: 52 NVEIKKIMKAN-EKVTSDADPMWYLKYLN-IYVGL---------PDVEESFNVTRPVSPH 100
Query: 360 ECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
ECRLRD+TYSAPITVDIEYTRGSQR++R+ L IGRMPIML+SS CVL KT
Sbjct: 101 ECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKT 151
Score = 279 (103.3 bits), Expect = 1.2e-170, Sum P(4) = 1.2e-170
Identities = 51/86 (59%), Positives = 70/86 (81%)
Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
KKT +++AR+ L+ST + H+PV F+ K +Y AVM+RR++LA D + +DDRDYYGNK
Sbjct: 302 KKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQGD-NKVDDRDYYGNK 360
Query: 509 RLELAGSLLSLMFEDVFKRFNSELKE 534
RLELAG LLSL+FED+FK+FNSE+K+
Sbjct: 361 RLELAGQLLSLLFEDLFKKFNSEMKK 386
Score = 231 (86.4 bits), Expect = 2.2e-165, Sum P(4) = 2.2e-165
Identities = 41/63 (65%), Positives = 54/63 (85%)
Query: 110 PEIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDI 169
P + +KW+L+ +FLK KGLVK HIDSF+YFINVEIKK+M+AN + SD DP++YLKYL+I
Sbjct: 21 PTVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMWYLKYLNI 80
Query: 170 HVG 172
+VG
Sbjct: 81 YVG 83
Score = 43 (20.2 bits), Expect = 3.3e-137, Sum P(4) = 3.3e-137
Identities = 10/50 (20%), Positives = 21/50 (42%)
Query: 1057 IVAPGEQICERQVLVNKSMPTISVSAISMATPEYKEVPVSYKGSVPSYLE 1106
I + G ++C ++V K P ++ + Y+ S+ YL+
Sbjct: 585 ISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLD 634
Score = 41 (19.5 bits), Expect = 3.3e-137, Sum P(4) = 3.3e-137
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 1156 PFNESGICPDIIMNPH 1171
PF G+C +I PH
Sbjct: 661 PFTLLGVCAGLIPYPH 676
Score = 41 (19.5 bits), Expect = 1.8e-52, Sum P(3) = 1.8e-52
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 1248 PFNESGICPDIIMNPH 1263
PF G+C +I PH
Sbjct: 661 PFTLLGVCAGLIPYPH 676
>UNIPROTKB|E1BPX6 [details] [associations]
symbol:POLR3B "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045089 "positive regulation of innate immune response"
evidence=IEA] [GO:0032728 "positive regulation of interferon-beta
production" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0045089
GO:GO:0003899 GO:GO:0032728 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03021 GeneTree:ENSGT00690000102214
OMA:DMIMNPH CTD:55703 EMBL:DAAA02013740 EMBL:DAAA02013741
EMBL:DAAA02013742 IPI:IPI00924128 RefSeq:NP_001179718.1
UniGene:Bt.42818 Ensembl:ENSBTAT00000038043 GeneID:540839
KEGG:bta:540839 NextBio:20878865 ArrayExpress:E1BPX6 Uniprot:E1BPX6
Length = 1133
Score = 1067 (380.7 bits), Expect = 1.5e-168, Sum P(2) = 1.5e-168
Identities = 193/264 (73%), Positives = 231/264 (87%)
Query: 913 GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
GL+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMY L Y Q+PMV++KTI +
Sbjct: 670 GLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIE 729
Query: 973 FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
F KLPAGQNAT+AVMSYSGYDIEDAL++NKASLDRGFGRCLVY+N+KC LK+Y NQT D+
Sbjct: 730 FEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDK 789
Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT----P 1088
++GP+L+A TRKP++RH LD DGI +PGE++ +QVLVNKSMPT++ + + P
Sbjct: 790 VMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQP 849
Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
+YK+VP++YKG+ SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GL
Sbjct: 850 QYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGL 909
Query: 1149 IVEQEDMPFNESGICPDIIMNPHG 1172
IV QEDMPF +SGICPDIIMNPHG
Sbjct: 910 IVPQEDMPFCDSGICPDIIMNPHG 933
Score = 806 (288.8 bits), Expect = 7.8e-178, Sum P(3) = 7.8e-178
Identities = 156/221 (70%), Positives = 182/221 (82%)
Query: 1150 VEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDA 1209
VE + + N+S P + P + +YK+VP++YKG+ SY+EKV++SSN+EDA
Sbjct: 821 VENKQVLVNKS--MPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAEDA 878
Query: 1210 FLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRM 1269
FLIKMLLRQTRRPEIGDKFSSRHGQKGV GLIV QEDMPF +SGICPDIIMNPHG+PSRM
Sbjct: 879 FLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRM 938
Query: 1270 TVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEAL 1329
TVGKLIELLAGKAG+++G + GTAFGG+K+ DV E+L+RHGYNY GKD SGITGE L
Sbjct: 939 TVGKLIELLAGKAGVLDGRFHYGTAFGGSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPL 998
Query: 1330 EAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPT-GR 1369
EAYIY GPVYYQKLKHMV DK+HAR+RGPR VLTRQPT GR
Sbjct: 999 EAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGR 1039
Score = 594 (214.2 bits), Expect = 7.8e-178, Sum P(3) = 7.8e-178
Identities = 118/209 (56%), Positives = 150/209 (71%)
Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGXXXXXXXXXXXXQFDIVNHM 192
+D DY+ N ++ Q + ++ D+ F + I QFD+V HM
Sbjct: 351 VDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKI----ADQVIPKQRAAQFDVVKHM 406
Query: 193 RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVS 252
RQD ITN + AI TGNW+++RFKM+RQGVTQVLSRLSYIS LGMMTRI+SQFEKTRKVS
Sbjct: 407 RQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVS 466
Query: 253 GPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMF 312
GPRSLQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT+ ++ ++K+ N+G+E + +
Sbjct: 467 GPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLL 526
Query: 313 NGEELSSPGVYLVFVNGILAGITCHHKEV 341
GEELS P V+LVF+NG + G+ HK++
Sbjct: 527 CGEELSYPNVFLVFLNGNILGVIRDHKKL 555
Score = 435 (158.2 bits), Expect = 7.8e-178, Sum P(3) = 7.8e-178
Identities = 89/150 (59%), Positives = 105/150 (70%)
Query: 677 RPTFLNMHQ---FLGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAP 733
+P N H G++ F+DFL+E +EYLDVNE ND +IA+ E I TTHLEI P
Sbjct: 603 KPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKD-TTHLEIEP 661
Query: 734 FTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDT 793
FTLLGVCAG L+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDT
Sbjct: 662 FTLLGVCAG--------------LIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDT 707
Query: 794 LMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
LMY L Y Q+PMV++KTI + F KLPAG+
Sbjct: 708 LMYLLAYPQKPMVKTKTIELIEFEKLPAGQ 737
Score = 281 (104.0 bits), Expect = 1.6e-170, Sum P(4) = 1.6e-170
Identities = 63/111 (56%), Positives = 79/111 (71%)
Query: 303 NIGIEHIAMFNGEELSS---PGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPH 359
N+ I+ I N E+++S P YL ++N I G+ P++EESFN TR +PH
Sbjct: 52 NVEIKKIMKAN-EKVTSDADPMWYLKYLN-IYVGL---------PDVEESFNVTRPVSPH 100
Query: 360 ECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
ECRLRD+TYSAPITVDIEYTRGSQR++R+ L IGRMPIML+SS CVL KT
Sbjct: 101 ECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKT 151
Score = 279 (103.3 bits), Expect = 1.6e-170, Sum P(4) = 1.6e-170
Identities = 51/86 (59%), Positives = 70/86 (81%)
Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
KKT +++AR+ L+ST + H+PV F+ K +Y AVM+RR++LA D + +DDRDYYGNK
Sbjct: 302 KKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQGD-NKVDDRDYYGNK 360
Query: 509 RLELAGSLLSLMFEDVFKRFNSELKE 534
RLELAG LLSL+FED+FK+FNSE+K+
Sbjct: 361 RLELAGQLLSLLFEDLFKKFNSEMKK 386
Score = 231 (86.4 bits), Expect = 2.9e-165, Sum P(4) = 2.9e-165
Identities = 41/63 (65%), Positives = 54/63 (85%)
Query: 110 PEIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDI 169
P + +KW+L+ +FLK KGLVK HIDSF+YFINVEIKK+M+AN + SD DP++YLKYL+I
Sbjct: 21 PTVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMWYLKYLNI 80
Query: 170 HVG 172
+VG
Sbjct: 81 YVG 83
Score = 43 (20.2 bits), Expect = 3.3e-137, Sum P(4) = 3.3e-137
Identities = 10/50 (20%), Positives = 21/50 (42%)
Query: 1057 IVAPGEQICERQVLVNKSMPTISVSAISMATPEYKEVPVSYKGSVPSYLE 1106
I + G ++C ++V K P ++ + Y+ S+ YL+
Sbjct: 585 ISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLD 634
Score = 41 (19.5 bits), Expect = 3.3e-137, Sum P(4) = 3.3e-137
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 1156 PFNESGICPDIIMNPH 1171
PF G+C +I PH
Sbjct: 661 PFTLLGVCAGLIPYPH 676
Score = 41 (19.5 bits), Expect = 1.8e-52, Sum P(3) = 1.8e-52
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 1248 PFNESGICPDIIMNPH 1263
PF G+C +I PH
Sbjct: 661 PFTLLGVCAGLIPYPH 676
>UNIPROTKB|Q9NW08 [details] [associations]
symbol:POLR3B "DNA-directed RNA polymerase III subunit
RPC2" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0045087 "innate immune response" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0051607 "defense response to
virus" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0045089 "positive regulation of innate
immune response" evidence=IMP] [GO:0032728 "positive regulation of
interferon-beta production" evidence=IMP] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006383 "transcription from RNA polymerase III
promoter" evidence=TAS] [GO:0006385 "transcription elongation from
RNA polymerase III promoter" evidence=TAS] [GO:0006386 "termination
of RNA polymerase III transcription" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] Reactome:REACT_71
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0005654 GO:GO:0046872 GO:GO:0003677
GO:GO:0045087 EMBL:CH471054 GO:GO:0006351 GO:GO:0051607
GO:GO:0045089 Reactome:REACT_1788 GO:GO:0003899 GO:GO:0032728
GO:GO:0006386 GO:GO:0006385 EMBL:AC009721 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000222962 HOVERGEN:HBG017744 Orphanet:88637 KO:K03021
OMA:DMIMNPH EMBL:AY092084 EMBL:AK001161 EMBL:AK001250 EMBL:AK122713
EMBL:AK291635 EMBL:AC078992 EMBL:AC080012 EMBL:BC046238
IPI:IPI00301346 IPI:IPI00930490 RefSeq:NP_001154180.1
RefSeq:NP_060552.4 UniGene:Hs.610795 UniGene:Hs.62696
ProteinModelPortal:Q9NW08 IntAct:Q9NW08 STRING:Q9NW08
PhosphoSite:Q9NW08 DMDM:29428029 PaxDb:Q9NW08 PRIDE:Q9NW08
Ensembl:ENST00000228347 Ensembl:ENST00000539066 GeneID:55703
KEGG:hsa:55703 UCSC:uc001tlp.3 CTD:55703 GeneCards:GC12P106751
H-InvDB:HIX0037055 HGNC:HGNC:30348 HPA:HPA036466 MIM:614366
MIM:614381 neXtProt:NX_Q9NW08 PharmGKB:PA134867680
InParanoid:Q9NW08 OrthoDB:EOG49ZXND PhylomeDB:Q9NW08
GenomeRNAi:55703 NextBio:60549 ArrayExpress:Q9NW08 Bgee:Q9NW08
CleanEx:HS_POLR3B Genevestigator:Q9NW08 GermOnline:ENSG00000013503
Uniprot:Q9NW08
Length = 1133
Score = 1067 (380.7 bits), Expect = 1.5e-168, Sum P(2) = 1.5e-168
Identities = 193/264 (73%), Positives = 231/264 (87%)
Query: 913 GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
GL+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMY L Y Q+PMV++KTI +
Sbjct: 670 GLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIE 729
Query: 973 FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
F KLPAGQNAT+AVMSYSGYDIEDAL++NKASLDRGFGRCLVY+N+KC LK+Y NQT D+
Sbjct: 730 FEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDK 789
Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT----P 1088
++GP+L+A TRKP++RH LD DGI +PGE++ +QVLVNKSMPT++ + + P
Sbjct: 790 VMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQP 849
Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
+YK+VP++YKG+ SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GL
Sbjct: 850 QYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGL 909
Query: 1149 IVEQEDMPFNESGICPDIIMNPHG 1172
IV QEDMPF +SGICPDIIMNPHG
Sbjct: 910 IVPQEDMPFCDSGICPDIIMNPHG 933
Score = 806 (288.8 bits), Expect = 7.8e-178, Sum P(3) = 7.8e-178
Identities = 156/221 (70%), Positives = 182/221 (82%)
Query: 1150 VEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDA 1209
VE + + N+S P + P + +YK+VP++YKG+ SY+EKV++SSN+EDA
Sbjct: 821 VENKQVLVNKS--MPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAEDA 878
Query: 1210 FLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRM 1269
FLIKMLLRQTRRPEIGDKFSSRHGQKGV GLIV QEDMPF +SGICPDIIMNPHG+PSRM
Sbjct: 879 FLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRM 938
Query: 1270 TVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEAL 1329
TVGKLIELLAGKAG+++G + GTAFGG+K+ DV E+L+RHGYNY GKD SGITGE L
Sbjct: 939 TVGKLIELLAGKAGVLDGRFHYGTAFGGSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPL 998
Query: 1330 EAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPT-GR 1369
EAYIY GPVYYQKLKHMV DK+HAR+RGPR VLTRQPT GR
Sbjct: 999 EAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGR 1039
Score = 594 (214.2 bits), Expect = 7.8e-178, Sum P(3) = 7.8e-178
Identities = 118/209 (56%), Positives = 150/209 (71%)
Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGXXXXXXXXXXXXQFDIVNHM 192
+D DY+ N ++ Q + ++ D+ F + I QFD+V HM
Sbjct: 351 VDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKI----ADQVIPKQRAAQFDVVKHM 406
Query: 193 RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVS 252
RQD ITN + AI TGNW+++RFKM+RQGVTQVLSRLSYIS LGMMTRI+SQFEKTRKVS
Sbjct: 407 RQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVS 466
Query: 253 GPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMF 312
GPRSLQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT+ ++ ++K+ N+G+E + +
Sbjct: 467 GPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLL 526
Query: 313 NGEELSSPGVYLVFVNGILAGITCHHKEV 341
GEELS P V+LVF+NG + G+ HK++
Sbjct: 527 CGEELSYPNVFLVFLNGNILGVIRDHKKL 555
Score = 435 (158.2 bits), Expect = 7.8e-178, Sum P(3) = 7.8e-178
Identities = 89/150 (59%), Positives = 105/150 (70%)
Query: 677 RPTFLNMHQ---FLGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAP 733
+P N H G++ F+DFL+E +EYLDVNE ND +IA+ E I TTHLEI P
Sbjct: 603 KPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKD-TTHLEIEP 661
Query: 734 FTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDT 793
FTLLGVCAG L+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDT
Sbjct: 662 FTLLGVCAG--------------LIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDT 707
Query: 794 LMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
LMY L Y Q+PMV++KTI + F KLPAG+
Sbjct: 708 LMYLLAYPQKPMVKTKTIELIEFEKLPAGQ 737
Score = 281 (104.0 bits), Expect = 1.6e-170, Sum P(4) = 1.6e-170
Identities = 63/111 (56%), Positives = 79/111 (71%)
Query: 303 NIGIEHIAMFNGEELSS---PGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPH 359
N+ I+ I N E+++S P YL ++N I G+ P++EESFN TR +PH
Sbjct: 52 NVEIKKIMKAN-EKVTSDADPMWYLKYLN-IYVGL---------PDVEESFNVTRPVSPH 100
Query: 360 ECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
ECRLRD+TYSAPITVDIEYTRGSQR++R+ L IGRMPIML+SS CVL KT
Sbjct: 101 ECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKT 151
Score = 279 (103.3 bits), Expect = 1.6e-170, Sum P(4) = 1.6e-170
Identities = 51/86 (59%), Positives = 70/86 (81%)
Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
KKT +++AR+ L+ST + H+PV F+ K +Y AVM+RR++LA D + +DDRDYYGNK
Sbjct: 302 KKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQGD-NKVDDRDYYGNK 360
Query: 509 RLELAGSLLSLMFEDVFKRFNSELKE 534
RLELAG LLSL+FED+FK+FNSE+K+
Sbjct: 361 RLELAGQLLSLLFEDLFKKFNSEMKK 386
Score = 231 (86.4 bits), Expect = 2.9e-165, Sum P(4) = 2.9e-165
Identities = 41/63 (65%), Positives = 54/63 (85%)
Query: 110 PEIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDI 169
P + +KW+L+ +FLK KGLVK HIDSF+YFINVEIKK+M+AN + SD DP++YLKYL+I
Sbjct: 21 PTVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMWYLKYLNI 80
Query: 170 HVG 172
+VG
Sbjct: 81 YVG 83
Score = 43 (20.2 bits), Expect = 3.3e-137, Sum P(4) = 3.3e-137
Identities = 10/50 (20%), Positives = 21/50 (42%)
Query: 1057 IVAPGEQICERQVLVNKSMPTISVSAISMATPEYKEVPVSYKGSVPSYLE 1106
I + G ++C ++V K P ++ + Y+ S+ YL+
Sbjct: 585 ISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLD 634
Score = 41 (19.5 bits), Expect = 3.3e-137, Sum P(4) = 3.3e-137
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 1156 PFNESGICPDIIMNPH 1171
PF G+C +I PH
Sbjct: 661 PFTLLGVCAGLIPYPH 676
Score = 41 (19.5 bits), Expect = 1.8e-52, Sum P(3) = 1.8e-52
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 1248 PFNESGICPDIIMNPH 1263
PF G+C +I PH
Sbjct: 661 PFTLLGVCAGLIPYPH 676
>WB|WBGene00017300 [details] [associations]
symbol:rpc-2 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0006915
"apoptotic process" evidence=IMP] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0006915
GO:GO:0002119 GO:GO:0003677 GO:GO:0000003 GO:GO:0006351
GO:GO:0003899 EMBL:FO081001 HSSP:P08518 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000222962 KO:K03021 GeneTree:ENSGT00690000102214
OMA:DMIMNPH PIR:T16011 RefSeq:NP_498192.2 ProteinModelPortal:Q27492
STRING:Q27492 PaxDb:Q27492 EnsemblMetazoa:F09F7.3.1
EnsemblMetazoa:F09F7.3.2 GeneID:175767 KEGG:cel:CELE_F09F7.3
UCSC:F09F7.3.1 CTD:175767 WormBase:F09F7.3 InParanoid:Q27492
NextBio:889574 Uniprot:Q27492
Length = 1154
Score = 927 (331.4 bits), Expect = 5.7e-165, Sum P(3) = 5.7e-165
Identities = 174/272 (63%), Positives = 216/272 (79%)
Query: 913 GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
GL+PYPHHNQ+PRNTYQCAMGKQAMG I YNQQ RID++MY L Y QRP+V+SKTI +TN
Sbjct: 683 GLIPYPHHNQSPRNTYQCAMGKQAMGTIAYNQQKRIDSIMYLLCYPQRPLVKSKTIELTN 742
Query: 973 FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
F KLPAG N IAVMSYSGYDIEDAL++NKASLDRG+GRCLVY++ K K+YPNQT DR
Sbjct: 743 FEKLPAGANGIIAVMSYSGYDIEDALVLNKASLDRGYGRCLVYKHVKGTAKKYPNQTFDR 802
Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTIS------VSA---- 1082
+LGP L+ +TRKP+++H+ LDQ+GIV G +I +Q ++NK MP +S SA
Sbjct: 803 LLGPALDPNTRKPIFKHKNLDQEGIVFAGARIMPKQTIINKHMPVVSGESGPGASASANT 862
Query: 1083 ISMA--TPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRH 1140
I +A +YK+V ++YK PSY E+VL++ N ++A L K+LLRQTRRPE+GDKFSSRH
Sbjct: 863 IGIAGRQVDYKDVSITYKTPTPSYAERVLLTYNEDEAHLFKVLLRQTRRPELGDKFSSRH 922
Query: 1141 GQKGVIGLIVEQEDMPFNESGICPDIIMNPHG 1172
GQKGV GLI +QEDMPFN+ G+ PD+IMNPHG
Sbjct: 923 GQKGVCGLIAQQEDMPFNDLGMVPDMIMNPHG 954
Score = 715 (256.8 bits), Expect = 6.7e-173, Sum P(4) = 6.7e-173
Identities = 138/212 (65%), Positives = 165/212 (77%)
Query: 1159 ESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQ 1218
ESG N G+ G R +YK+V ++YK PSY E+VL++ N ++A L K+LLRQ
Sbjct: 851 ESGPGASASANTIGIAG--RQVDYKDVSITYKTPTPSYAERVLLTYNEDEAHLFKVLLRQ 908
Query: 1219 TRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELL 1278
TRRPE+GDKFSSRHGQKGV GLI +QEDMPFN+ G+ PD+IMNPHGYPSRMTVGKL+ELL
Sbjct: 909 TRRPELGDKFSSRHGQKGVCGLIAQQEDMPFNDLGMVPDMIMNPHGYPSRMTVGKLMELL 968
Query: 1279 AGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPV 1338
+GKAG++ G Y GTAFGG ++ DV EEL GYNY GKD+ SGITG+ L AYIY GP+
Sbjct: 969 SGKAGVVNGTYHYGTAFGGDQVKDVCEELAACGYNYMGKDMLTSGITGQPLSAYIYFGPI 1028
Query: 1339 YYQKLKHMVQDKIHARSRGPRVVLTRQPT-GR 1369
YYQKLKHMV DK+HAR+RGPR LTRQPT GR
Sbjct: 1029 YYQKLKHMVLDKMHARARGPRAALTRQPTEGR 1060
Score = 538 (194.4 bits), Expect = 6.7e-173, Sum P(4) = 6.7e-173
Identities = 103/157 (65%), Positives = 124/157 (78%)
Query: 187 DIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFE 246
DIV HMRQD ITN + A+ TGNW I+RF+MER GVTQVLSRLSYIS LGMMTRINS FE
Sbjct: 414 DIVKHMRQDMITNTIVNAMSTGNWIIKRFRMERLGVTQVLSRLSYISALGMMTRINSTFE 473
Query: 247 KTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGI 306
KTRKVSGPRSLQ SQWGMLCPSDTPEGEACGLVKNLAL++HITT++DEK +L+++ N G+
Sbjct: 474 KTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALISHITTDSDEKPVLRLLLNSGV 533
Query: 307 EHIAMFNGEELSSPGVYLVFVNGILAGITCHHKEVCK 343
E + + ++ P L+F+NG+L G + V K
Sbjct: 534 EDLHNVHFSHVNKPENTLIFLNGVLIGTAVDPERVVK 570
Score = 412 (150.1 bits), Expect = 6.7e-173, Sum P(4) = 6.7e-173
Identities = 85/131 (64%), Positives = 97/131 (74%)
Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKR 751
F+DF+ +G +EYLDVNE ND+ IAV I P TTHLEI PFTLLGVCAG
Sbjct: 634 FEDFVDDGIVEYLDVNEMNDALIAVYGREIGPE-TTHLEIEPFTLLGVCAG--------- 683
Query: 752 FHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTI 811
L+PYPHHNQ+PRNTYQCAMGKQAMG I YNQQ RID++MY L Y QRP+V+SKTI
Sbjct: 684 -----LIPYPHHNQSPRNTYQCAMGKQAMGTIAYNQQKRIDSIMYLLCYPQRPLVKSKTI 738
Query: 812 RITNFHKLPAG 822
+TNF KLPAG
Sbjct: 739 ELTNFEKLPAG 749
Score = 251 (93.4 bits), Expect = 8.9e-165, Sum P(5) = 8.9e-165
Identities = 48/70 (68%), Positives = 57/70 (81%)
Query: 343 KPEIEESFNYTR-QTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQS 401
KP EE N T + TP ECRLRD+TYSAPI+VDIEYTRG+QRV + DL+IGRMPIML+S
Sbjct: 86 KPSSEEGLNMTHDKITPQECRLRDMTYSAPISVDIEYTRGNQRVFKKDLIIGRMPIMLRS 145
Query: 402 SKCVLRNKTE 411
SKC+LR+ E
Sbjct: 146 SKCILRDLAE 155
Score = 250 (93.1 bits), Expect = 8.9e-165, Sum P(5) = 8.9e-165
Identities = 51/79 (64%), Positives = 62/79 (78%)
Query: 455 DARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAG 514
+A DFLS++ I HI + FKMKA+YL +M RR++ + LDDRD+YGNKRLELAG
Sbjct: 320 EAVDFLSNSMITHIACPDGNFKMKAIYLGLMTRRLIQTELGENGLDDRDFYGNKRLELAG 379
Query: 515 SLLSLMFEDVFKRFNSELK 533
SLLSL+FEDVFKRFNSELK
Sbjct: 380 SLLSLLFEDVFKRFNSELK 398
Score = 190 (71.9 bits), Expect = 6.7e-173, Sum P(4) = 6.7e-173
Identities = 39/86 (45%), Positives = 54/86 (62%)
Query: 87 TVKAVHGTYLTMVTDETSKLKDSPEIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKK 146
T+ V+G + E K + + DKW LV +FLK +GLVK H+ SFD+F+ EI+
Sbjct: 2 TIGQVNGR--ARIKSECGKDQKCMPLEDKWLLVPAFLKVRGLVKQHLVSFDHFVQEEIRS 59
Query: 147 LMQANANIYSDVDPLFYLKYLDIHVG 172
+M +N I SD +P FYLKYLDI +G
Sbjct: 60 IMLSNQKITSDANPNFYLKYLDIRIG 85
Score = 42 (19.8 bits), Expect = 5.3e-134, Sum P(4) = 5.3e-134
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 1131 EIGDKFSSRHGQKGVIGL-IVEQEDMPFNESGICPDIIMNPH 1171
E+ D + +G++ IG E PF G+C +I PH
Sbjct: 650 EMNDALIAVYGRE--IGPETTHLEIEPFTLLGVCAGLIPYPH 689
Score = 42 (19.8 bits), Expect = 1.3e-61, Sum P(3) = 1.3e-61
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 1223 EIGDKFSSRHGQKGVIGL-IVEQEDMPFNESGICPDIIMNPH 1263
E+ D + +G++ IG E PF G+C +I PH
Sbjct: 650 EMNDALIAVYGRE--IGPETTHLEIEPFTLLGVCAGLIPYPH 689
Score = 38 (18.4 bits), Expect = 1.3e-81, Sum P(4) = 1.3e-81
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 1010 GRC-LVYRNSKCVLKQYPNQTHDRI 1033
GR ++ R+SKC+L+ + R+
Sbjct: 137 GRMPIMLRSSKCILRDLAEEELARV 161
>GENEDB_PFALCIPARUM|PFL0330c [details] [associations]
symbol:PFL0330c "DNA-directed RNA polymerase III
subunit, putative" species:5833 "Plasmodium falciparum" [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=ISS] [GO:0006383
"transcription from RNA polymerase III promoter" evidence=ISS]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 EMBL:AE014188 GO:GO:0006383
GO:GO:0005666 GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 HOGENOM:HOG000222962 KO:K03021 OMA:IRRIIMA
RefSeq:XP_001350475.1 ProteinModelPortal:Q8I5X9
EnsemblProtists:PFL0330c:mRNA GeneID:811119 KEGG:pfa:PFL0330c
EuPathDB:PlasmoDB:PF3D7_1206600 ProtClustDB:CLSZ2444941
Uniprot:Q8I5X9
Length = 1450
Score = 1078 (384.5 bits), Expect = 1.8e-163, Sum P(4) = 1.8e-163
Identities = 228/462 (49%), Positives = 306/462 (66%)
Query: 913 GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
GL+PYP+HNQ+PRNTYQCAMGKQA+G IGYNQ R DTL+Y LVY Q+P+V+SKTI N
Sbjct: 916 GLIPYPNHNQSPRNTYQCAMGKQAIGAIGYNQFVRCDTLLYLLVYPQKPLVKSKTIEFIN 975
Query: 973 FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
F KLPAGQNA +AVMS+ GYDIEDA++MNK+S+DRGFGRC+ R LK+Y N ++D
Sbjct: 976 FEKLPAGQNAIVAVMSFCGYDIEDAIVMNKSSIDRGFGRCMSLRKHSVELKKYFNGSNDI 1035
Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKE 1092
+L L + + + R + + I E+ +Q + ++ S + S +
Sbjct: 1036 VLPSPLVINKLQQQRKEREIKSE-IKNEKEKDGIKQEHHHNNID--SKNNKSSYNNNVSK 1092
Query: 1093 VPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV--IGLIV 1150
+ K S Y K + + + +D + KM + R K+ S GV IG ++
Sbjct: 1093 IDNVKKDS---YGHKNISNESKDD--IKKMANKDIR------KYHSLD-MDGVASIGYLI 1140
Query: 1151 EQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAF 1210
++ + N+ P I + G I ++K + YK PSY++K++ + NSE
Sbjct: 1141 KEGQLYVNK--FSPKNIKDHVKDIGKVDINDFKINEIKYKSVYPSYIDKIIFTENSEGLK 1198
Query: 1211 LIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMT 1270
L K+++RQTR PE+GDKFSSRHGQKGV+GL+V QEDMPF ESGICPD+IMNPHG+PSRMT
Sbjct: 1199 LYKIIMRQTRLPELGDKFSSRHGQKGVVGLLVNQEDMPFTESGICPDLIMNPHGFPSRMT 1258
Query: 1271 VGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALE 1330
VGKL+EL+A KA +M+G YK G+ F GT ++ E L R+G+N K++ YSG+TGE LE
Sbjct: 1259 VGKLLELVASKAAVMDGEYKYGSIFSGTPFEEIAEILFRYGFNCSSKELLYSGLTGEPLE 1318
Query: 1331 AYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
YI+ GP+YYQKLKHMVQDKIHAR+RGPR +LTRQPT R K
Sbjct: 1319 TYIFMGPIYYQKLKHMVQDKIHARARGPRQLLTRQPTEGRSK 1360
Score = 504 (182.5 bits), Expect = 3.3e-160, Sum P(2) = 3.3e-160
Identities = 106/256 (41%), Positives = 155/256 (60%)
Query: 95 YLTMVTDETSKLKDSPEIRDKWKLVLSFLK---EKGLVKPHIDSFDYFINVEIKKLMQAN 151
+L+ V + K + R+K + + ++ + K ID DY+ N ++ Q
Sbjct: 539 FLSRVLLSHIQQKSKYDFRNKARCICLMIRRVLDSANNKNEIDDKDYYGNKRLELAGQLI 598
Query: 152 ANIYSDVDPLFYL-----------KYLDIHVGXXXXXXXXXXXXQF-DIVNHMRQDTITN 199
+ ++ D+ FY KY+ + + D+ ++ +D IT
Sbjct: 599 SLLFEDLYKRFYFTLKKQIDQTLSKYMQSNYNSKLRSTGNNMNDNYPDVFRNLPKDIITR 658
Query: 200 ALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVSGPRSLQG 259
+ AI TGNW I+RFKME+ GV+QVLSRLS+I+ +GMMTR+NSQFEK RKVSGPR+LQ
Sbjct: 659 GMQTAISTGNWNIKRFKMEKSGVSQVLSRLSFIACIGMMTRLNSQFEKGRKVSGPRALQP 718
Query: 260 SQWGMLCPSDTPEGEACGLVKNLALMTHITTENDE-KNMLKIMYNIGIEHIAMFNGEELS 318
SQWG+LCP DTPEGE+CGLVKNLALMTH+T +N+ +N+++I+Y +G+E GEE+
Sbjct: 719 SQWGVLCPCDTPEGESCGLVKNLALMTHVTNDNENNENLIEILYTLGVEDSDSLTGEEIY 778
Query: 319 SPGVYLVFVNGILAGI 334
GV+ V +NGIL G+
Sbjct: 779 KEGVFFVILNGILLGV 794
Score = 351 (128.6 bits), Expect = 4.1e-75, Sum P(2) = 4.1e-75
Identities = 77/136 (56%), Positives = 92/136 (67%)
Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
G F D L IE++DVNE N+ IA++ES I TTHLEI P T+LGV AG
Sbjct: 863 GTINFFDLLKSSVIEWIDVNEQNNLLIALNESDISLS-TTHLEIDPLTILGVVAG----- 916
Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
L+PYP+HNQ+PRNTYQCAMGKQA+G IGYNQ R DTL+Y LVY Q+P+V+
Sbjct: 917 ---------LIPYPNHNQSPRNTYQCAMGKQAIGAIGYNQFVRCDTLLYLLVYPQKPLVK 967
Query: 808 SKTIRITNFHKLPAGK 823
SKTI NF KLPAG+
Sbjct: 968 SKTIEFINFEKLPAGQ 983
Score = 197 (74.4 bits), Expect = 1.8e-163, Sum P(4) = 1.8e-163
Identities = 40/96 (41%), Positives = 68/96 (70%)
Query: 440 LRQKRFQTYKKTPVDDARDFLSSTCIAHIPVINMR-FKMKAMYLAVMIRRMVLALSDPDM 498
+++K+ + +K +++ DFLS ++HI + F+ KA + +MIRR++ + ++ +
Sbjct: 521 MKEKQVKN-EKDIIEEGLDFLSRVLLSHIQQKSKYDFRNKARCICLMIRRVLDSANNKNE 579
Query: 499 LDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELKE 534
+DD+DYYGNKRLELAG L+SL+FED++KRF LK+
Sbjct: 580 IDDKDYYGNKRLELAGQLISLLFEDLYKRFYFTLKK 615
Score = 187 (70.9 bits), Expect = 1.8e-163, Sum P(4) = 1.8e-163
Identities = 35/68 (51%), Positives = 50/68 (73%)
Query: 344 PEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSK 403
P +EE+ T+ TP CR RDLTYSAPI VD+EY +G+ + ++++ IGR+P+ML+S
Sbjct: 303 PSVEENMIETK-LTPQICRQRDLTYSAPIYVDVEYVKGNSIITKNNVEIGRLPVMLRSDI 361
Query: 404 CVLRNKTE 411
CVL NK+E
Sbjct: 362 CVLNNKSE 369
Score = 178 (67.7 bits), Expect = 1.8e-163, Sum P(4) = 1.8e-163
Identities = 42/126 (33%), Positives = 72/126 (57%)
Query: 53 DFGDSKVVSLRELLSHVTYQKRLYRLTVQPNWLGTVKAVHGTYLTMVTDETSKLKDSPE- 111
+F + + +L+E + + + + +L N L + G + + K+ ++ +
Sbjct: 177 NFNEDNINNLKEFIHNENKKPKTGKLYNNMNILNDEENFSGLVIKN-KEHNKKIYENSKC 235
Query: 112 ---IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANAN--IYSDVDPLFYLKY 166
+ +KWKL+ ++LK KGLVK HI+S++YFI EIK +M A N I SD+D FY+++
Sbjct: 236 VNTLNEKWKLLPAYLKVKGLVKQHIESYNYFIKREIKTIMNATTNKIIKSDIDEHFYVEF 295
Query: 167 LDIHVG 172
LDI VG
Sbjct: 296 LDITVG 301
Score = 39 (18.8 bits), Expect = 1.8e-21, Sum P(3) = 1.8e-21
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 1011 RC-LVYRNSKCVLK 1023
RC +VY+N+K LK
Sbjct: 430 RCAIVYKNNKLYLK 443
Score = 38 (18.4 bits), Expect = 3.1e-130, Sum P(3) = 3.1e-130
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 133 IDSFDYFINVEIKKLMQA-NANIYSDVDPLFYL 164
I S ++N + L + N NI +++D L Y+
Sbjct: 472 IGSHKNYVNGILLSLYELYNENIKTNLDALLYI 504
Score = 37 (18.1 bits), Expect = 4.6e-42, Sum P(2) = 4.6e-42
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 724 GVTTHLEIAPFTLLGVC 740
G+ + E PFT G+C
Sbjct: 1227 GLLVNQEDMPFTESGIC 1243
>UNIPROTKB|Q8I5X9 [details] [associations]
symbol:PFL0330c "DNA-directed RNA polymerase" species:36329
"Plasmodium falciparum 3D7" [GO:0005666 "DNA-directed RNA
polymerase III complex" evidence=ISS] [GO:0006383 "transcription
from RNA polymerase III promoter" evidence=ISS] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 EMBL:AE014188 GO:GO:0006383 GO:GO:0005666
GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000222962 KO:K03021 OMA:IRRIIMA RefSeq:XP_001350475.1
ProteinModelPortal:Q8I5X9 EnsemblProtists:PFL0330c:mRNA
GeneID:811119 KEGG:pfa:PFL0330c EuPathDB:PlasmoDB:PF3D7_1206600
ProtClustDB:CLSZ2444941 Uniprot:Q8I5X9
Length = 1450
Score = 1078 (384.5 bits), Expect = 1.8e-163, Sum P(4) = 1.8e-163
Identities = 228/462 (49%), Positives = 306/462 (66%)
Query: 913 GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
GL+PYP+HNQ+PRNTYQCAMGKQA+G IGYNQ R DTL+Y LVY Q+P+V+SKTI N
Sbjct: 916 GLIPYPNHNQSPRNTYQCAMGKQAIGAIGYNQFVRCDTLLYLLVYPQKPLVKSKTIEFIN 975
Query: 973 FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
F KLPAGQNA +AVMS+ GYDIEDA++MNK+S+DRGFGRC+ R LK+Y N ++D
Sbjct: 976 FEKLPAGQNAIVAVMSFCGYDIEDAIVMNKSSIDRGFGRCMSLRKHSVELKKYFNGSNDI 1035
Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKE 1092
+L L + + + R + + I E+ +Q + ++ S + S +
Sbjct: 1036 VLPSPLVINKLQQQRKEREIKSE-IKNEKEKDGIKQEHHHNNID--SKNNKSSYNNNVSK 1092
Query: 1093 VPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV--IGLIV 1150
+ K S Y K + + + +D + KM + R K+ S GV IG ++
Sbjct: 1093 IDNVKKDS---YGHKNISNESKDD--IKKMANKDIR------KYHSLD-MDGVASIGYLI 1140
Query: 1151 EQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAF 1210
++ + N+ P I + G I ++K + YK PSY++K++ + NSE
Sbjct: 1141 KEGQLYVNK--FSPKNIKDHVKDIGKVDINDFKINEIKYKSVYPSYIDKIIFTENSEGLK 1198
Query: 1211 LIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMT 1270
L K+++RQTR PE+GDKFSSRHGQKGV+GL+V QEDMPF ESGICPD+IMNPHG+PSRMT
Sbjct: 1199 LYKIIMRQTRLPELGDKFSSRHGQKGVVGLLVNQEDMPFTESGICPDLIMNPHGFPSRMT 1258
Query: 1271 VGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALE 1330
VGKL+EL+A KA +M+G YK G+ F GT ++ E L R+G+N K++ YSG+TGE LE
Sbjct: 1259 VGKLLELVASKAAVMDGEYKYGSIFSGTPFEEIAEILFRYGFNCSSKELLYSGLTGEPLE 1318
Query: 1331 AYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWK 1372
YI+ GP+YYQKLKHMVQDKIHAR+RGPR +LTRQPT R K
Sbjct: 1319 TYIFMGPIYYQKLKHMVQDKIHARARGPRQLLTRQPTEGRSK 1360
Score = 504 (182.5 bits), Expect = 3.3e-160, Sum P(2) = 3.3e-160
Identities = 106/256 (41%), Positives = 155/256 (60%)
Query: 95 YLTMVTDETSKLKDSPEIRDKWKLVLSFLK---EKGLVKPHIDSFDYFINVEIKKLMQAN 151
+L+ V + K + R+K + + ++ + K ID DY+ N ++ Q
Sbjct: 539 FLSRVLLSHIQQKSKYDFRNKARCICLMIRRVLDSANNKNEIDDKDYYGNKRLELAGQLI 598
Query: 152 ANIYSDVDPLFYL-----------KYLDIHVGXXXXXXXXXXXXQF-DIVNHMRQDTITN 199
+ ++ D+ FY KY+ + + D+ ++ +D IT
Sbjct: 599 SLLFEDLYKRFYFTLKKQIDQTLSKYMQSNYNSKLRSTGNNMNDNYPDVFRNLPKDIITR 658
Query: 200 ALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVSGPRSLQG 259
+ AI TGNW I+RFKME+ GV+QVLSRLS+I+ +GMMTR+NSQFEK RKVSGPR+LQ
Sbjct: 659 GMQTAISTGNWNIKRFKMEKSGVSQVLSRLSFIACIGMMTRLNSQFEKGRKVSGPRALQP 718
Query: 260 SQWGMLCPSDTPEGEACGLVKNLALMTHITTENDE-KNMLKIMYNIGIEHIAMFNGEELS 318
SQWG+LCP DTPEGE+CGLVKNLALMTH+T +N+ +N+++I+Y +G+E GEE+
Sbjct: 719 SQWGVLCPCDTPEGESCGLVKNLALMTHVTNDNENNENLIEILYTLGVEDSDSLTGEEIY 778
Query: 319 SPGVYLVFVNGILAGI 334
GV+ V +NGIL G+
Sbjct: 779 KEGVFFVILNGILLGV 794
Score = 351 (128.6 bits), Expect = 4.1e-75, Sum P(2) = 4.1e-75
Identities = 77/136 (56%), Positives = 92/136 (67%)
Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
G F D L IE++DVNE N+ IA++ES I TTHLEI P T+LGV AG
Sbjct: 863 GTINFFDLLKSSVIEWIDVNEQNNLLIALNESDISLS-TTHLEIDPLTILGVVAG----- 916
Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
L+PYP+HNQ+PRNTYQCAMGKQA+G IGYNQ R DTL+Y LVY Q+P+V+
Sbjct: 917 ---------LIPYPNHNQSPRNTYQCAMGKQAIGAIGYNQFVRCDTLLYLLVYPQKPLVK 967
Query: 808 SKTIRITNFHKLPAGK 823
SKTI NF KLPAG+
Sbjct: 968 SKTIEFINFEKLPAGQ 983
Score = 197 (74.4 bits), Expect = 1.8e-163, Sum P(4) = 1.8e-163
Identities = 40/96 (41%), Positives = 68/96 (70%)
Query: 440 LRQKRFQTYKKTPVDDARDFLSSTCIAHIPVINMR-FKMKAMYLAVMIRRMVLALSDPDM 498
+++K+ + +K +++ DFLS ++HI + F+ KA + +MIRR++ + ++ +
Sbjct: 521 MKEKQVKN-EKDIIEEGLDFLSRVLLSHIQQKSKYDFRNKARCICLMIRRVLDSANNKNE 579
Query: 499 LDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELKE 534
+DD+DYYGNKRLELAG L+SL+FED++KRF LK+
Sbjct: 580 IDDKDYYGNKRLELAGQLISLLFEDLYKRFYFTLKK 615
Score = 187 (70.9 bits), Expect = 1.8e-163, Sum P(4) = 1.8e-163
Identities = 35/68 (51%), Positives = 50/68 (73%)
Query: 344 PEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSK 403
P +EE+ T+ TP CR RDLTYSAPI VD+EY +G+ + ++++ IGR+P+ML+S
Sbjct: 303 PSVEENMIETK-LTPQICRQRDLTYSAPIYVDVEYVKGNSIITKNNVEIGRLPVMLRSDI 361
Query: 404 CVLRNKTE 411
CVL NK+E
Sbjct: 362 CVLNNKSE 369
Score = 178 (67.7 bits), Expect = 1.8e-163, Sum P(4) = 1.8e-163
Identities = 42/126 (33%), Positives = 72/126 (57%)
Query: 53 DFGDSKVVSLRELLSHVTYQKRLYRLTVQPNWLGTVKAVHGTYLTMVTDETSKLKDSPE- 111
+F + + +L+E + + + + +L N L + G + + K+ ++ +
Sbjct: 177 NFNEDNINNLKEFIHNENKKPKTGKLYNNMNILNDEENFSGLVIKN-KEHNKKIYENSKC 235
Query: 112 ---IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANAN--IYSDVDPLFYLKY 166
+ +KWKL+ ++LK KGLVK HI+S++YFI EIK +M A N I SD+D FY+++
Sbjct: 236 VNTLNEKWKLLPAYLKVKGLVKQHIESYNYFIKREIKTIMNATTNKIIKSDIDEHFYVEF 295
Query: 167 LDIHVG 172
LDI VG
Sbjct: 296 LDITVG 301
Score = 39 (18.8 bits), Expect = 1.8e-21, Sum P(3) = 1.8e-21
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 1011 RC-LVYRNSKCVLK 1023
RC +VY+N+K LK
Sbjct: 430 RCAIVYKNNKLYLK 443
Score = 38 (18.4 bits), Expect = 3.1e-130, Sum P(3) = 3.1e-130
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 133 IDSFDYFINVEIKKLMQA-NANIYSDVDPLFYL 164
I S ++N + L + N NI +++D L Y+
Sbjct: 472 IGSHKNYVNGILLSLYELYNENIKTNLDALLYI 504
Score = 37 (18.1 bits), Expect = 4.6e-42, Sum P(2) = 4.6e-42
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 724 GVTTHLEIAPFTLLGVC 740
G+ + E PFT G+C
Sbjct: 1227 GLLVNQEDMPFTESGIC 1243
>POMBASE|SPAC4G9.08c [details] [associations]
symbol:rpc2 "DNA-directed RNA polymerase III complex
subunit Rpc2" species:4896 "Schizosaccharomyces pombe" [GO:0003677
"DNA binding" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0005666 "DNA-directed RNA
polymerase III complex" evidence=NAS] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006383 "transcription from RNA polymerase III
promoter" evidence=NAS] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PomBase:SPAC4G9.08c PANTHER:PTHR20856 GO:GO:0005829 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0046872 GO:GO:0003677 GO:GO:0006383
GO:GO:0005666 GO:GO:0003899 eggNOG:COG0085 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 HOGENOM:HOG000222962
KO:K03021 OMA:DMIMNPH EMBL:DQ156226 PIR:T38867 RefSeq:NP_593690.1
ProteinModelPortal:Q10233 DIP:DIP-29536N STRING:Q10233
EnsemblFungi:SPAC4G9.08c.1 GeneID:2543393 KEGG:spo:SPAC4G9.08c
OrthoDB:EOG4K6KC8 NextBio:20804408 Uniprot:Q10233
Length = 1165
Score = 856 (306.4 bits), Expect = 1.5e-146, Sum P(4) = 1.5e-146
Identities = 155/266 (58%), Positives = 207/266 (77%)
Query: 913 GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
GL+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ RIDTL+Y +VY Q+PMV++KTI +
Sbjct: 699 GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLQRIDTLLYLMVYPQQPMVKTKTIELIG 758
Query: 973 FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
+ KLPAGQNAT+A+MSYSGYDIEDAL++NK+S+DRGFGRC V+ ++++YPN THDR
Sbjct: 759 YDKLPAGQNATVAIMSYSGYDIEDALVLNKSSIDRGFGRCQVFHKHSVIVRKYPNGTHDR 818
Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISV-SAISMA---TP 1088
I P + +T + V++H ++ DG+ G ++ Q+ VNK PT ++ ++I++ T
Sbjct: 819 IGDPQRDPETGEVVWKHGVVEDDGLAGVGCRVQPGQIYVNKQTPTNALDNSITLGHTQTV 878
Query: 1089 E--YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVI 1146
E YK P++YK P Y++KV++++ D LIK+L+RQTRRPE+GDKFSSRHGQKGV
Sbjct: 879 ESGYKATPMTYKAPEPGYIDKVMLTTTDSDQTLIKVLMRQTRRPELGDKFSSRHGQKGVC 938
Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHG 1172
G+IV+QEDMPFN+ GICPDIIMNPHG
Sbjct: 939 GVIVQQEDMPFNDQGICPDIIMNPHG 964
Score = 721 (258.9 bits), Expect = 6.6e-161, Sum P(5) = 6.6e-161
Identities = 129/189 (68%), Positives = 156/189 (82%)
Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
YK P++YK P Y++KV++++ D LIK+L+RQTRRPE+GDKFSSRHGQKGV G+I
Sbjct: 882 YKATPMTYKAPEPGYIDKVMLTTTDSDQTLIKVLMRQTRRPELGDKFSSRHGQKGVCGVI 941
Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
V+QEDMPFN+ GICPDIIMNPHG+PSRMTVGK+IELL+GK G++ G + GT FGGTK+
Sbjct: 942 VQQEDMPFNDQGICPDIIMNPHGFPSRMTVGKMIELLSGKVGVLRGTLEYGTCFGGTKVE 1001
Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
D L+ HGYNY GKD+ SGITGE LEAYI+ GP+YYQKLKHMV DK+HAR+RGPR V
Sbjct: 1002 DASRILVEHGYNYSGKDMLTSGITGETLEAYIFMGPIYYQKLKHMVMDKMHARARGPRAV 1061
Query: 1362 LTRQPT-GR 1369
LTRQPT GR
Sbjct: 1062 LTRQPTEGR 1070
Score = 530 (191.6 bits), Expect = 1.8e-154, Sum P(3) = 1.8e-154
Identities = 112/211 (53%), Positives = 140/211 (66%)
Query: 128 LVKP-HIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGXXXXXXXXXXXXQF 186
+V P +D DY N ++ Q A ++ D LF D+ + +F
Sbjct: 371 MVDPLQVDDRDYVGNKRLELAGQLLALLFED---LFKKFNSDLKLNIDKVLKKPHRTQEF 427
Query: 187 DIVNHM--RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQ 244
D N + D IT + A+ TGNW+++RFKMER GVT VLSRLSYIS LGMMTRI SQ
Sbjct: 428 DAYNQLTVHSDHITQGMVRALSTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRITSQ 487
Query: 245 FEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNI 304
FEKTRKVSGPRSLQ SQ+GMLC SDTPEGEACGLVKNLALMTHITT+ +E+ ++K+ Y
Sbjct: 488 FEKTRKVSGPRSLQASQFGMLCTSDTPEGEACGLVKNLALMTHITTDEEEEPIIKLAYAF 547
Query: 305 GIEHIAMFNGEELSSPGVYLVFVNGILAGIT 335
GIE I + +G EL S G YLV++NG + GI+
Sbjct: 548 GIEDIHVISGRELHSHGTYLVYLNGAILGIS 578
Score = 386 (140.9 bits), Expect = 6.6e-161, Sum P(5) = 6.6e-161
Identities = 78/132 (59%), Positives = 95/132 (71%)
Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKR 751
F+DFL +G +EY+DVNE NDS I+V E I P TTHLEI PFT+LG AG
Sbjct: 650 FEDFLKQGLVEYVDVNEENDSLISVYERDITPD-TTHLEIEPFTILGAVAG--------- 699
Query: 752 FHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTI 811
L+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ RIDTL+Y +VY Q+PMV++KTI
Sbjct: 700 -----LIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLQRIDTLLYLMVYPQQPMVKTKTI 754
Query: 812 RITNFHKLPAGK 823
+ + KLPAG+
Sbjct: 755 ELIGYDKLPAGQ 766
Score = 252 (93.8 bits), Expect = 6.6e-161, Sum P(5) = 6.6e-161
Identities = 47/90 (52%), Positives = 70/90 (77%)
Query: 452 PVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLE 511
P ++A + L++ +AHI V N+ F+ KA+Y+ +M RR+++A+ DP +DDRDY GNKRLE
Sbjct: 330 PHEEALEVLAAVVLAHINVFNLEFRPKAVYIGIMARRVLMAMVDPLQVDDRDYVGNKRLE 389
Query: 512 LAGSLLSLMFEDVFKRFNSELKETNLSGVV 541
LAG LL+L+FED+FK+FNS+LK N+ V+
Sbjct: 390 LAGQLLALLFEDLFKKFNSDLK-LNIDKVL 418
Score = 227 (85.0 bits), Expect = 6.6e-161, Sum P(5) = 6.6e-161
Identities = 42/69 (60%), Positives = 56/69 (81%)
Query: 105 KLKDS-PEIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFY 163
KL D P I DKW+L+ +FLK KGLVK H+DS++YF++V++KK++QAN + SDV+P FY
Sbjct: 39 KLADPVPTIEDKWQLLPAFLKVKGLVKQHLDSYNYFVDVDLKKIVQANEKVTSDVEPWFY 98
Query: 164 LKYLDIHVG 172
LKYLDI VG
Sbjct: 99 LKYLDIRVG 107
Score = 195 (73.7 bits), Expect = 6.6e-161, Sum P(5) = 6.6e-161
Identities = 38/55 (69%), Positives = 44/55 (80%)
Query: 357 TPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKTE 411
+PHECRLRDLTY A I VDIEYTRG Q V R ++ IGRMP+ML+S+KCVL K E
Sbjct: 122 SPHECRLRDLTYGANIYVDIEYTRGKQVVRRRNVPIGRMPVMLRSNKCVLSGKNE 176
Score = 44 (20.5 bits), Expect = 2.7e-103, Sum P(3) = 2.7e-103
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 47 PLFKQV-DFG--DSKVVSLRELLSHVTY 71
P+ K FG D V+S REL SH TY
Sbjct: 539 PIIKLAYAFGIEDIHVISGRELHSHGTY 566
Score = 40 (19.1 bits), Expect = 1.2e-124, Sum P(5) = 1.2e-124
Identities = 22/106 (20%), Positives = 43/106 (40%)
Query: 984 IAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCV-LKQYPNQTHDRILGPLLEADT 1042
I ++Y+ + IED +++ L G LVY N + + +YP+ L +
Sbjct: 540 IIKLAYA-FGIEDIHVISGREL-HSHGTYLVYLNGAILGISRYPS-LFVASFRKLRRSGK 596
Query: 1043 RKP---VYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISM 1085
P ++ + I G +IC ++V +P + I +
Sbjct: 597 ISPFIGIFINTHQRAVFISTDGGRICRPLIIVQNGLPKVESKHIRL 642
Score = 38 (18.4 bits), Expect = 2.0e-45, Sum P(2) = 2.0e-45
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 388 SDLVIGRMPIMLQSSKCVLRNKTEY 412
S + +G+M +L VLR EY
Sbjct: 967 SRMTVGKMIELLSGKVGVLRGTLEY 991
>CGD|CAL0002357 [details] [associations]
symbol:orf19.5847 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0005666 "DNA-directed RNA polymerase
III complex" evidence=IEA] [GO:0042797 "tRNA transcription from RNA
polymerase III promoter" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 CGD:CAL0002357
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000222962 KO:K03021 EMBL:AACQ01000235 EMBL:AACQ01000236
RefSeq:XP_710802.1 RefSeq:XP_710813.1 STRING:Q59M52 GeneID:3647582
GeneID:3647593 KEGG:cal:CaO19.13269 KEGG:cal:CaO19.5847
Uniprot:Q59M52
Length = 1157
Score = 857 (306.7 bits), Expect = 3.4e-148, Sum P(4) = 3.4e-148
Identities = 168/288 (58%), Positives = 212/288 (73%)
Query: 913 GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
GL+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ RIDTL+Y +VY Q+PMV++KTI +
Sbjct: 694 GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFRRIDTLLYFMVYPQQPMVKTKTIELIE 753
Query: 973 FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
+ KLPAGQNAT+AVMSYSGYDIEDAL++NKASLDRGFGRC V R + LK+YPN T D
Sbjct: 754 YDKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCQVVRKNTVQLKKYPNHTQDI 813
Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPE--- 1089
+ G ++ + KP+++H+AL DG+ G +I QV NK +PT S + A E
Sbjct: 814 LAGMRVD-ENNKPIFQHQALGPDGLGEVGSRIFNGQVFANKCVPTNSGDSTLGAQQEQRA 872
Query: 1090 ---YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVI 1146
++E P YKG PSY+++V++S + D LIK+LLRQTRRPE+GDKFSSRHGQKGV
Sbjct: 873 AESHREAPAFYKGPEPSYIDQVMMSVSDNDQALIKVLLRQTRRPELGDKFSSRHGQKGVC 932
Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVP-VSYKGSV 1193
G+IV+QED+PFN+SGI PDIIMNPHG R+T K + +S K V
Sbjct: 933 GIIVQQEDLPFNDSGISPDIIMNPHGFPS--RMTVGKMIELISGKAGV 978
Score = 706 (253.6 bits), Expect = 3.9e-158, Sum P(5) = 3.9e-158
Identities = 128/189 (67%), Positives = 161/189 (85%)
Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
++E P YKG PSY+++V++S + D LIK+LLRQTRRPE+GDKFSSRHGQKGV G+I
Sbjct: 876 HREAPAFYKGPEPSYIDQVMMSVSDNDQALIKVLLRQTRRPELGDKFSSRHGQKGVCGII 935
Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
V+QED+PFN+SGI PDIIMNPHG+PSRMTVGK+IEL++GKAG++ G+ + GT FGG+KL
Sbjct: 936 VQQEDLPFNDSGISPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGSLEYGTCFGGSKLE 995
Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
D+ + LI G++Y GKD+ YSGITGE L+AYI+ GP+YYQKLKHMV DK+HAR+RGPR V
Sbjct: 996 DMSKILIEKGFSYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAV 1055
Query: 1362 LTRQPT-GR 1369
LTRQPT GR
Sbjct: 1056 LTRQPTEGR 1064
Score = 463 (168.0 bits), Expect = 1.4e-145, Sum P(3) = 1.4e-145
Identities = 127/333 (38%), Positives = 178/333 (53%)
Query: 20 LKHHPIGTPGPAYIFFLLEGLQA---ILFLPLFKQVDFGDSKVVSLREL--LSHVTYQKR 74
LKH+ I P I G+ + IL L ++ D VV+ E L T Q+
Sbjct: 241 LKHNSISEDIPIVIILKAAGIVSDLEILQLVCGSDSNYQDLFVVNFEEAARLEVFTQQQA 300
Query: 75 LYRL-----TVQPNWLGTVKAVHGTYLTMVTDETSKLKDSP-EIRDKWKLVLSFLKEKGL 128
LY + T++ + + + T + L S + R+K L ++ + + +
Sbjct: 301 LYYVGKRVKTIRRAGAPKLSQLQEGIEAIATTIIAHLTVSDLQFREK-ALYIATMARRVV 359
Query: 129 VKPH----IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGXXXXXXXXXXXX 184
+ H +D DY N ++ Q + ++ D LF D
Sbjct: 360 MAMHNPKMVDDRDYVGNKRLELAGQLMSLLFED---LFKKFNSDFKANIDKVLKKPSRTS 416
Query: 185 QFDIVN--HMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRIN 242
+FD + ++ + IT L AI TGNW+++RFKMER GVT VLSRLSYIS LGMMTRI+
Sbjct: 417 EFDALLSINIHSNNITMGLNRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRIS 476
Query: 243 SQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMY 302
SQFEK+RKVSGPR+LQ SQ+GMLC +DTPEGEACGLVKNLALMTHITT+++E + K+
Sbjct: 477 SQFEKSRKVSGPRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEEAPVKKLCI 536
Query: 303 NIGIEHIAMFNGEELSSPGVYLVFVNGILAGIT 335
+G E I + L G + V++NG L G T
Sbjct: 537 ALGCEPIFALDSATLHVDGNFGVYLNGTLIGTT 569
Score = 385 (140.6 bits), Expect = 3.9e-158, Sum P(5) = 3.9e-158
Identities = 80/135 (59%), Positives = 95/135 (70%)
Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGI--RPG-VTTHLEIAPFTLLGVCAGIELLQY 748
FDDFL G +EYLDVNE NDS IA+ E I PG + THLEI PFT+LG AG
Sbjct: 641 FDDFLTHGLVEYLDVNEENDSLIALYEDDITANPGAIVTHLEIEPFTVLGAVAG------ 694
Query: 749 NKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVES 808
L+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ RIDTL+Y +VY Q+PMV++
Sbjct: 695 --------LIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFRRIDTLLYFMVYPQQPMVKT 746
Query: 809 KTIRITNFHKLPAGK 823
KTI + + KLPAG+
Sbjct: 747 KTIELIEYDKLPAGQ 761
Score = 249 (92.7 bits), Expect = 3.9e-158, Sum P(5) = 3.9e-158
Identities = 46/93 (49%), Positives = 72/93 (77%)
Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
K + + + + +++T IAH+ V +++F+ KA+Y+A M RR+V+A+ +P M+DDRDY GNK
Sbjct: 318 KLSQLQEGIEAIATTIIAHLTVSDLQFREKALYIATMARRVVMAMHNPKMVDDRDYVGNK 377
Query: 509 RLELAGSLLSLMFEDVFKRFNSELKETNLSGVV 541
RLELAG L+SL+FED+FK+FNS+ K N+ V+
Sbjct: 378 RLELAGQLMSLLFEDLFKKFNSDFK-ANIDKVL 409
Score = 209 (78.6 bits), Expect = 3.9e-158, Sum P(5) = 3.9e-158
Identities = 39/69 (56%), Positives = 54/69 (78%)
Query: 105 KLKDSPEI-RDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFY 163
KL D +DKW L+ +FLK KGLVK H+DS++YF++V++KK+++AN + SDVDP FY
Sbjct: 30 KLTDEINTAKDKWNLLPAFLKVKGLVKQHLDSYNYFVDVDLKKIIKANELVLSDVDPEFY 89
Query: 164 LKYLDIHVG 172
+KYLDI VG
Sbjct: 90 VKYLDIRVG 98
Score = 208 (78.3 bits), Expect = 3.9e-158, Sum P(5) = 3.9e-158
Identities = 41/74 (55%), Positives = 52/74 (70%)
Query: 338 HKEVCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPI 397
HK KP ++E PHECRLRDLTYSAPI VD+EYTRG + + +DL IGRMP+
Sbjct: 99 HKSTSKPGVKEVI-----LPPHECRLRDLTYSAPIYVDVEYTRGRKIIRHNDLEIGRMPV 153
Query: 398 MLQSSKCVLRNKTE 411
ML+S+KC+L +E
Sbjct: 154 MLRSNKCMLEGMSE 167
Score = 37 (18.1 bits), Expect = 5.0e-48, Sum P(4) = 5.0e-48
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 738 GVCAGI---ELLQYNKRFHSPGLVPYPH 762
GVC I E L +N SP ++ PH
Sbjct: 930 GVCGIIVQQEDLPFNDSGISPDIIMNPH 957
>SGD|S000005733 [details] [associations]
symbol:RET1 "Second-largest subunit of RNA polymerase III"
species:4932 "Saccharomyces cerevisiae" [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA;IDA] [GO:0042797 "tRNA
transcription from RNA polymerase III promoter" evidence=IGI;IDA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0032549 "ribonucleoside
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005666 "DNA-directed RNA polymerase III complex"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 SGD:S000005733 PANTHER:PTHR20856 EMBL:BK006948
GO:GO:0046872 GO:GO:0003677 GO:GO:0005666 GO:GO:0003899
Reactome:REACT_83470 EMBL:M38723 eggNOG:COG0085 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 Reactome:REACT_87991
GO:GO:0042797 HOGENOM:HOG000222962 KO:K03021
GeneTree:ENSGT00690000102214 OMA:DMIMNPH OrthoDB:EOG4K6KC8
EMBL:Z75115 PIR:S67099 RefSeq:NP_014850.1 ProteinModelPortal:P22276
DIP:DIP-997N IntAct:P22276 MINT:MINT-644049 STRING:P22276
PaxDb:P22276 PeptideAtlas:P22276 EnsemblFungi:YOR207C GeneID:854382
KEGG:sce:YOR207C CYGD:YOR207c NextBio:976523 Genevestigator:P22276
GermOnline:YOR207C Uniprot:P22276
Length = 1149
Score = 837 (299.7 bits), Expect = 1.2e-139, Sum P(4) = 1.2e-139
Identities = 161/287 (56%), Positives = 214/287 (74%)
Query: 913 GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
GL+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ RIDTL+Y + Y Q+PMV++KTI + +
Sbjct: 686 GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMTYPQQPMVKTKTIELID 745
Query: 973 FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
+ KLPAGQNAT+AVMSYSGYDIEDAL++NK+S+DRGFGRC R + VLK+Y N T D
Sbjct: 746 YDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCETRRKTTTVLKRYANHTQD- 804
Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSA-----ISMAT 1087
I+G + + P+++H++L DG+ G ++ Q+ +NKS+PT S A +++ T
Sbjct: 805 IIGGMRVDENGDPIWQHQSLGPDGLGEVGMKVQSGQIYINKSVPTNSADAPNPNNVNVQT 864
Query: 1088 PEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
+Y+E PV Y+G PS++++V++S + D LIK+LLRQ RRPE+GDKFSSRHGQKGV G
Sbjct: 865 -QYREAPVIYRGPEPSHIDQVMMSVSDNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCG 923
Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVP-VSYKGSV 1193
+IV+QEDMPFN+ GI PDIIMNPHG R+T K + +S K V
Sbjct: 924 IIVKQEDMPFNDQGIVPDIIMNPHGFPS--RMTVGKMIELISGKAGV 968
Score = 711 (255.3 bits), Expect = 1.4e-157, Sum P(5) = 1.4e-157
Identities = 134/227 (59%), Positives = 174/227 (76%)
Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVS 1203
G +G+ V+ + N+S P + + T+Y+E PV Y+G PS++++V++S
Sbjct: 830 GEVGMKVQSGQIYINKS--VPTNSADAPNPNNVNVQTQYREAPVIYRGPEPSHIDQVMMS 887
Query: 1204 SNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPH 1263
+ D LIK+LLRQ RRPE+GDKFSSRHGQKGV G+IV+QEDMPFN+ GI PDIIMNPH
Sbjct: 888 VSDNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCGIIVKQEDMPFNDQGIVPDIIMNPH 947
Query: 1264 GYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSG 1323
G+PSRMTVGK+IEL++GKAG++ G + GT FGG+KL D+ + L+ G+NY GKD+ YSG
Sbjct: 948 GFPSRMTVGKMIELISGKAGVLNGTLEYGTCFGGSKLEDMSKILVDQGFNYSGKDMLYSG 1007
Query: 1324 ITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPT-GR 1369
ITGE L+AYI+ GP+YYQKLKHMV DK+HAR+RGPR VLTRQPT GR
Sbjct: 1008 ITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGR 1054
Score = 458 (166.3 bits), Expect = 4.1e-146, Sum P(3) = 4.1e-146
Identities = 102/204 (50%), Positives = 134/204 (65%)
Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGXXXXXXXXXXXXQFDIVN-- 190
ID DY N ++ Q + ++ D LF D + ++D +
Sbjct: 366 IDDRDYVGNKRLELAGQLISLLFED---LFKKFNNDFKLSIDKVLKKPNRAMEYDALLSI 422
Query: 191 HMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRK 250
++ + IT+ L AI TGNW+++RFKMER GVT VLSRLSYIS LGMMTRI+SQFEK+RK
Sbjct: 423 NVHSNNITSGLNRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSRK 482
Query: 251 VSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIA 310
VSGPR+LQ SQ+GMLC +DTPEGEACGLVKNLALMTHITT+++E+ + K+ Y +G+E I
Sbjct: 483 VSGPRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEEEPIKKLCYVLGVEDIT 542
Query: 311 MFNGEELS-SPGVYLVFVNGILAG 333
+ + L + GVYL NG L G
Sbjct: 543 LIDSASLHLNYGVYL---NGTLIG 563
Score = 389 (142.0 bits), Expect = 1.4e-157, Sum P(5) = 1.4e-157
Identities = 84/154 (54%), Positives = 105/154 (68%)
Query: 671 SSGCQPRPTFLNMHQFL-GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHL 729
S G Q R +++ + L G FDDFL G +EYLDVNE NDS+IA+ E I P +T HL
Sbjct: 616 SDG-QSRVKDIHLRKLLDGELDFDDFLKLGLVEYLDVNEENDSYIALYEKDIVPSMT-HL 673
Query: 730 EIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQN 789
EI PFT+LG AG L+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ
Sbjct: 674 EIEPFTILGAVAG--------------LIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFK 719
Query: 790 RIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
RIDTL+Y + Y Q+PMV++KTI + ++ KLPAG+
Sbjct: 720 RIDTLLYLMTYPQQPMVKTKTIELIDYDKLPAGQ 753
Score = 243 (90.6 bits), Expect = 1.4e-157, Sum P(5) = 1.4e-157
Identities = 45/91 (49%), Positives = 69/91 (75%)
Query: 443 KRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDR 502
K + K T + + + +++T IAH+ V + F+ KA+Y+A+M RR+V+A+ +P M+DDR
Sbjct: 310 KTMRRQKLTILQEGIEAIATTVIAHLTVEALDFREKALYIAMMTRRVVMAMYNPKMIDDR 369
Query: 503 DYYGNKRLELAGSLLSLMFEDVFKRFNSELK 533
DY GNKRLELAG L+SL+FED+FK+FN++ K
Sbjct: 370 DYVGNKRLELAGQLISLLFEDLFKKFNNDFK 400
Score = 207 (77.9 bits), Expect = 1.4e-157, Sum P(5) = 1.4e-157
Identities = 40/69 (57%), Positives = 53/69 (76%)
Query: 105 KLKDSPEI-RDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFY 163
KL D +DKW L+ +FLK KGLVK H+DSF+YF++ ++KK+++AN I SDVDP FY
Sbjct: 33 KLTDEINTAQDKWHLLPAFLKVKGLVKQHLDSFNYFVDTDLKKIIKANQLILSDVDPEFY 92
Query: 164 LKYLDIHVG 172
LKY+DI VG
Sbjct: 93 LKYVDIRVG 101
Score = 200 (75.5 bits), Expect = 1.4e-157, Sum P(5) = 1.4e-157
Identities = 37/56 (66%), Positives = 45/56 (80%)
Query: 356 TTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKTE 411
T PHECRLRD+TYSAPI VDIEYTRG ++ D+ IGRMPIML+S+KC+L + E
Sbjct: 113 TPPHECRLRDMTYSAPIYVDIEYTRGRNIIMHKDVEIGRMPIMLRSNKCILYDADE 168
Score = 44 (20.5 bits), Expect = 1.8e-46, Sum P(5) = 1.8e-46
Identities = 17/68 (25%), Positives = 28/68 (41%)
Query: 1104 YLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGIC 1163
+L K+L D FL L+ E D + + + +K ++ + E PF G
Sbjct: 626 HLRKLLDGELDFDDFLKLGLVEYLDVNEENDSYIALY-EKDIVPSMTHLEIEPFTILGAV 684
Query: 1164 PDIIMNPH 1171
+I PH
Sbjct: 685 AGLIPYPH 692
Score = 44 (20.5 bits), Expect = 1.8e-46, Sum P(5) = 1.8e-46
Identities = 17/68 (25%), Positives = 28/68 (41%)
Query: 1196 YLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGIC 1255
+L K+L D FL L+ E D + + + +K ++ + E PF G
Sbjct: 626 HLRKLLDGELDFDDFLKLGLVEYLDVNEENDSYIALY-EKDIVPSMTHLEIEPFTILGAV 684
Query: 1256 PDIIMNPH 1263
+I PH
Sbjct: 685 AGLIPYPH 692
Score = 40 (19.1 bits), Expect = 4.8e-121, Sum P(5) = 4.8e-121
Identities = 19/82 (23%), Positives = 35/82 (42%)
Query: 994 IEDALIMNKASLDRGFGRCLVYRNSKCVLK-QYPNQ--THDRILGPLLEADTRKPVYRHR 1050
+ED +++ ASL +G VY N + ++P + T R L + +Y +
Sbjct: 538 VEDITLIDSASLHLNYG---VYLNGTLIGSIRFPTKFVTQFRHLRRTGKVSEFISIYSNS 594
Query: 1051 ALDQDGIVAPGEQICERQVLVN 1072
I G +IC ++V+
Sbjct: 595 HQMAVHIATDGGRICRPLIIVS 616
>UNIPROTKB|F1SPQ0 [details] [associations]
symbol:LOC100737037 "DNA-directed RNA polymerase"
species:9823 "Sus scrofa" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
GeneTree:ENSGT00690000102214 OMA:DMIMNPH EMBL:FP565199
Ensembl:ENSSSCT00000000178 Uniprot:F1SPQ0
Length = 902
Score = 937 (334.9 bits), Expect = 4.2e-154, Sum P(2) = 4.2e-154
Identities = 169/236 (71%), Positives = 206/236 (87%)
Query: 913 GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
GL+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMY L Y Q+PMV++KTI +
Sbjct: 667 GLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIE 726
Query: 973 FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
F KLPAGQNAT+AVMSYSGYDIEDAL++NKASLDRGFGRCLVY+N+KC LK+Y NQT D+
Sbjct: 727 FEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDK 786
Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT----P 1088
++GP+L+A TRKP++RH LD DGI +PGE++ +QVLVNKSMPT++ + + P
Sbjct: 787 VMGPVLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQP 846
Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKG 1144
+YK+VP++YKG+ SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKG
Sbjct: 847 QYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKG 902
Score = 594 (214.2 bits), Expect = 4.2e-154, Sum P(2) = 4.2e-154
Identities = 118/209 (56%), Positives = 150/209 (71%)
Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGXXXXXXXXXXXXQFDIVNHM 192
+D DY+ N ++ Q + ++ D+ F + I QFD+V HM
Sbjct: 348 VDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKI----ADQVIPKQRAAQFDVVKHM 403
Query: 193 RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVS 252
RQD ITN + AI TGNW+++RFKM+RQGVTQVLSRLSYIS LGMMTRI+SQFEKTRKVS
Sbjct: 404 RQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVS 463
Query: 253 GPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMF 312
GPRSLQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT+ ++ ++K+ N+G+E + +
Sbjct: 464 GPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLL 523
Query: 313 NGEELSSPGVYLVFVNGILAGITCHHKEV 341
GEELS P V+LVF+NG + G+ HK++
Sbjct: 524 CGEELSYPNVFLVFLNGNILGVIRDHKKL 552
Score = 435 (158.2 bits), Expect = 1.5e-117, Sum P(3) = 1.5e-117
Identities = 89/150 (59%), Positives = 105/150 (70%)
Query: 677 RPTFLNMHQ---FLGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAP 733
+P N H G++ F+DFL+E +EYLDVNE ND +IA+ E I TTHLEI P
Sbjct: 600 KPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKD-TTHLEIEP 658
Query: 734 FTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDT 793
FTLLGVCAG L+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDT
Sbjct: 659 FTLLGVCAG--------------LIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDT 704
Query: 794 LMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
LMY L Y Q+PMV++KTI + F KLPAG+
Sbjct: 705 LMYLLAYPQKPMVKTKTIELIEFEKLPAGQ 734
Score = 281 (104.0 bits), Expect = 3.9e-107, Sum P(4) = 3.9e-107
Identities = 63/111 (56%), Positives = 79/111 (71%)
Query: 303 NIGIEHIAMFNGEELSS---PGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPH 359
N+ I+ I N E+++S P YL ++N I G+ P++EESFN TR +PH
Sbjct: 49 NVEIKKIMKAN-EKVTSDADPMWYLKYLN-IYVGL---------PDVEESFNVTRPVSPH 97
Query: 360 ECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
ECRLRD+TYSAPITVDIEYTRGSQR++R+ L IGRMPIML+SS CVL KT
Sbjct: 98 ECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKT 148
Score = 279 (103.3 bits), Expect = 3.9e-107, Sum P(4) = 3.9e-107
Identities = 51/86 (59%), Positives = 70/86 (81%)
Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
KKT +++AR+ L+ST + H+PV F+ K +Y AVM+RR++LA D + +DDRDYYGNK
Sbjct: 299 KKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQGD-NKVDDRDYYGNK 357
Query: 509 RLELAGSLLSLMFEDVFKRFNSELKE 534
RLELAG LLSL+FED+FK+FNSE+K+
Sbjct: 358 RLELAGQLLSLLFEDLFKKFNSEMKK 383
Score = 254 (94.5 bits), Expect = 1.5e-117, Sum P(3) = 1.5e-117
Identities = 51/87 (58%), Positives = 65/87 (74%)
Query: 1150 VEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDA 1209
VE + + N+S P + P + +YK+VP++YKG+ SY+EKV++SSN+EDA
Sbjct: 818 VENKQVLVNKS--MPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAEDA 875
Query: 1210 FLIKMLLRQTRRPEIGDKFSSRHGQKG 1236
FLIKMLLRQTRRPEIGDKFSSRHGQKG
Sbjct: 876 FLIKMLLRQTRRPEIGDKFSSRHGQKG 902
Score = 229 (85.7 bits), Expect = 1.1e-101, Sum P(4) = 1.1e-101
Identities = 41/63 (65%), Positives = 54/63 (85%)
Query: 110 PEIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDI 169
P + +KW+L+ +FLK KGLVK HIDSF+YFINVEIKK+M+AN + SD DP++YLKYL+I
Sbjct: 18 PTVDEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMWYLKYLNI 77
Query: 170 HVG 172
+VG
Sbjct: 78 YVG 80
Score = 43 (20.2 bits), Expect = 2.3e-76, Sum P(3) = 2.3e-76
Identities = 10/50 (20%), Positives = 21/50 (42%)
Query: 1057 IVAPGEQICERQVLVNKSMPTISVSAISMATPEYKEVPVSYKGSVPSYLE 1106
I + G ++C ++V K P ++ + Y+ S+ YL+
Sbjct: 582 ISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLD 631
Score = 41 (19.5 bits), Expect = 4.7e-54, Sum P(3) = 4.7e-54
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 1156 PFNESGICPDIIMNPH 1171
PF G+C +I PH
Sbjct: 658 PFTLLGVCAGLIPYPH 673
Score = 41 (19.5 bits), Expect = 4.7e-54, Sum P(3) = 4.7e-54
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 1248 PFNESGICPDIIMNPH 1263
PF G+C +I PH
Sbjct: 658 PFTLLGVCAGLIPYPH 673
>DICTYBASE|DDB_G0288449 [details] [associations]
symbol:rpc2 "RNA polymerase III, second largest
subunit" species:44689 "Dictyostelium discoideum" [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0016539 "intein-mediated
protein splicing" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA;ISS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006360 "transcription from RNA polymerase I
promoter" evidence=ISS] [GO:0005736 "DNA-directed RNA polymerase I
complex" evidence=ISS] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR006141 InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PROSITE:PS50817
PROSITE:PS50818 dictyBase:DDB_G0288449 PANTHER:PTHR20856
GO:GO:0046872 GO:GO:0003677 GenomeReviews:CM000154_GR
EMBL:AAFI02000111 GO:GO:0006360 GO:GO:0005736 GO:GO:0003899
InterPro:IPR003587 SMART:SM00306 GO:GO:0016539 TIGRFAMs:TIGR01443
TIGRFAMs:TIGR01445 HSSP:P08518 eggNOG:COG0085 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 RefSeq:XP_636731.1
STRING:Q54IZ9 EnsemblProtists:DDB0216313 GeneID:8626608
KEGG:ddi:DDB_G0288449 KO:K03021 OMA:IRRIIMA Uniprot:Q54IZ9
Length = 1608
Score = 823 (294.8 bits), Expect = 2.6e-130, Sum P(4) = 2.6e-130
Identities = 159/264 (60%), Positives = 198/264 (75%)
Query: 913 GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
GL+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ RIDTL+Y LV+ QRP+ +++TI + N
Sbjct: 1150 GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLTRIDTLLYLLVHTQRPLCQTRTIDLLN 1209
Query: 973 FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
++KLPAG NAT+AVMSYSGYDIEDAL+MNKASLDRGFGRC+V + +K++ N T DR
Sbjct: 1210 WYKLPAGHNATVAVMSYSGYDIEDALVMNKASLDRGFGRCIVLKKQVTSIKKHGNDTSDR 1269
Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMP--TISVSAISMATPE- 1089
I P D R+P Y LD DGI PGE + Q+LVNK P TI + P+
Sbjct: 1270 IFPPTPN-DLRQPKYG--LLDSDGIAKPGELAQKGQILVNKYSPLNTIDATPNPELIPDS 1326
Query: 1090 -YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
YK + YK P++++KVL++S ++ LIKML+R TRRPE+GDKFSSRHGQKGV G+
Sbjct: 1327 AYKSSYMGYKYDNPAFIDKVLLTSGDDEQLLIKMLMRSTRRPELGDKFSSRHGQKGVCGI 1386
Query: 1149 IVEQEDMPFNESGICPDIIMNPHG 1172
IV+QEDMPF++ GICPDIIMNPHG
Sbjct: 1387 IVKQEDMPFSDLGICPDIIMNPHG 1410
Score = 649 (233.5 bits), Expect = 5.4e-147, Sum P(5) = 5.4e-147
Identities = 128/247 (51%), Positives = 172/247 (69%)
Query: 1124 LRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYK 1183
LRQ + + ++ G+ G I+ + P N P NP + + YK
Sbjct: 1278 LRQPKYGLLDSDGIAKPGELAQKGQILVNKYSPLNTIDATP----NPELIPD----SAYK 1329
Query: 1184 EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVE 1243
+ YK P++++KVL++S ++ LIKML+R TRRPE+GDKFSSRHGQKGV G+IV+
Sbjct: 1330 SSYMGYKYDNPAFIDKVLLTSGDDEQLLIKMLMRSTRRPELGDKFSSRHGQKGVCGIIVK 1389
Query: 1244 QEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDV 1303
QEDMPF++ GICPDIIMNPHG+PSRMT+GK+IELLAGKAG++ G + GT FGG ++ ++
Sbjct: 1390 QEDMPFSDLGICPDIIMNPHGFPSRMTIGKMIELLAGKAGVLSGKFGFGTCFGGDRVENI 1449
Query: 1304 QEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLT 1363
+ LI G++Y GKD SG+TGE L +I+ GP++YQKLKHMV DK+HAR+RGP V LT
Sbjct: 1450 SKVLISKGFSYGGKDYVTSGVTGEPLACFIFFGPIFYQKLKHMVMDKMHARARGPTVTLT 1509
Query: 1364 RQPT-GR 1369
RQPT GR
Sbjct: 1510 RQPTEGR 1516
Score = 397 (144.8 bits), Expect = 5.4e-147, Sum P(5) = 5.4e-147
Identities = 80/135 (59%), Positives = 98/135 (72%)
Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
G + FDDF+ EG IEYLDVNE NDS +A E+ I+P TTHLEI PFT+LG AG
Sbjct: 1097 GLRTFDDFIREGIIEYLDVNEENDSFLAWREAAIQPW-TTHLEIEPFTMLGCVAG----- 1150
Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
L+PYPHHNQ+PRNTYQCAMGKQA+G I YNQ RIDTL+Y LV+ QRP+ +
Sbjct: 1151 ---------LIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLTRIDTLLYLLVHTQRPLCQ 1201
Query: 808 SKTIRITNFHKLPAG 822
++TI + N++KLPAG
Sbjct: 1202 TRTIDLLNWYKLPAG 1216
Score = 362 (132.5 bits), Expect = 4.9e-141, Sum P(4) = 4.9e-141
Identities = 76/147 (51%), Positives = 93/147 (63%)
Query: 130 KPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGXXXXXXXXXXXXQFDIV 189
K +D DY+ N I+ Q + ++ D F ++ D+
Sbjct: 363 KSCLDDKDYYGNKRIELSGQLISLLFEDCFKKFQS---ELKKSVDQAIAKANRAENLDLP 419
Query: 190 NHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTR 249
+R DTITN T AI +G W ++RF+MER GV+QVLSRLSYIS +GMMTRI SQFEKTR
Sbjct: 420 KLIRTDTITNGFTHAISSGQWNLKRFRMERSGVSQVLSRLSYISCMGMMTRIQSQFEKTR 479
Query: 250 KVSGPRSLQGSQWGMLCPSDTPEGEAC 276
KV+GPRSLQ SQWGMLCPSDTPEGEAC
Sbjct: 480 KVAGPRSLQPSQWGMLCPSDTPEGEAC 506
Score = 262 (97.3 bits), Expect = 5.4e-147, Sum P(5) = 5.4e-147
Identities = 46/87 (52%), Positives = 67/87 (77%)
Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
KKT ++ARD L+ + H+PV F++K +YL++MIRR+++A D LDD+DYYGNK
Sbjct: 316 KKTKSEEARDILAGVVLNHVPVRRYNFRLKVIYLSLMIRRIIMASKDKSCLDDKDYYGNK 375
Query: 509 RLELAGSLLSLMFEDVFKRFNSELKET 535
R+EL+G L+SL+FED FK+F SELK++
Sbjct: 376 RIELSGQLISLLFEDCFKKFQSELKKS 402
Score = 192 (72.6 bits), Expect = 5.4e-147, Sum P(5) = 5.4e-147
Identities = 35/70 (50%), Positives = 56/70 (80%)
Query: 104 SKLKDSPE-IRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLF 162
SKL D + + +KWKLV +F+K +GLVK HIDSF++FINVE+KK+++AN + ++ DP +
Sbjct: 27 SKLTDDIKPVEEKWKLVPAFMKCRGLVKQHIDSFNFFINVEMKKIVKANERLTAENDPSY 86
Query: 163 YLKYLDIHVG 172
++++ DI+VG
Sbjct: 87 FVRFTDINVG 96
Score = 181 (68.8 bits), Expect = 5.4e-147, Sum P(5) = 5.4e-147
Identities = 35/56 (62%), Positives = 42/56 (75%)
Query: 355 QTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
Q TP CRLRD+TYSAPI V+IEYTR Q + + D+ IG +PIML+SS CVL KT
Sbjct: 109 QLTPQRCRLRDMTYSAPIFVNIEYTRNKQIISKRDVHIGNIPIMLRSSNCVLSKKT 164
Score = 170 (64.9 bits), Expect = 4.9e-141, Sum P(4) = 4.9e-141
Identities = 30/59 (50%), Positives = 44/59 (74%)
Query: 276 CGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
CGLVKN ALM+H+TT++ E +L++ YN+G++ I + GEEL+S YLV +NG + GI
Sbjct: 970 CGLVKNFALMSHVTTDDSEGPLLRLAYNLGVQDILLVTGEELNSRNAYLVLLNGQIIGI 1028
Score = 45 (20.9 bits), Expect = 2.1e-73, Sum P(3) = 2.1e-73
Identities = 18/74 (24%), Positives = 37/74 (50%)
Query: 1013 LVYRNSKCVL-KQYPNQTHDRILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLV 1071
++ R+S CVL K+ P Q + L E Y Q+ ++ EQ+ + ++++
Sbjct: 151 IMLRSSNCVLSKKTPEQ-----MAALGECPMDPGGY-FIVRGQEKVILNHEQLSKNRIII 204
Query: 1072 ---NKSMPTISVSA 1082
+K +P+ SV++
Sbjct: 205 EMDSKGLPSASVTS 218
Score = 40 (19.1 bits), Expect = 1.9e-44, Sum P(4) = 1.9e-44
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 724 GVTTHLEIAPFTLLGVCAGI 743
G+ E PF+ LG+C I
Sbjct: 1385 GIIVKQEDMPFSDLGICPDI 1404
Score = 37 (18.1 bits), Expect = 6.3e-107, Sum P(4) = 6.3e-107
Identities = 4/16 (25%), Positives = 13/16 (81%)
Query: 56 DSKVVSLRELLSHVTY 71
+++++ +RE L+++ Y
Sbjct: 885 NNQIIQIREYLNYINY 900
>ASPGD|ASPL0000054387 [details] [associations]
symbol:AN0321 species:162425 "Emericella nidulans"
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 EMBL:BN001308 GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
OMA:DMIMNPH EnsemblFungi:CADANIAT00002388 Uniprot:C8VU19
Length = 1225
Score = 790 (283.2 bits), Expect = 1.2e-128, Sum P(4) = 1.2e-128
Identities = 150/265 (56%), Positives = 194/265 (73%)
Query: 913 GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
GL+PYPHHNQ+PRNTYQCAMGKQA+G I NQ RID+++Y +VY Q+PMV+S+TI +T
Sbjct: 758 GLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVYPQKPMVKSRTIELTK 817
Query: 973 FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
+ +LPAGQNAT+AVMSYSGYDIEDAL++NK S+DRGFGRC V+R +K Y N T D
Sbjct: 818 YDQLPAGQNATVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYVTNMKSYSNGTKDI 877
Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSA----ISMATP 1088
+ P E D P+ +H L+ DG+ A GEQ+ +V +NKS P S+S+ P
Sbjct: 878 LSPPTYENDA--PIRKHALLESDGLAAVGEQVNAGEVYINKSTPDQSMSSGMPGSDAGRP 935
Query: 1089 -EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
Y P++YK P+Y++KV++S+ + +IK+L RQTRRPE+GDKFSSRHGQKGV G
Sbjct: 936 ISYNPTPMTYKLPDPAYIDKVMISATENENQIIKVLTRQTRRPEVGDKFSSRHGQKGVTG 995
Query: 1148 LIVEQEDMPFNESGICPDIIMNPHG 1172
+IV+Q DMPF + GI PDIIMNPHG
Sbjct: 996 IIVDQADMPFTDQGINPDIIMNPHG 1020
Score = 655 (235.6 bits), Expect = 8.5e-147, Sum P(5) = 8.5e-147
Identities = 127/227 (55%), Positives = 167/227 (73%)
Query: 1146 IGLIVEQEDMPFNESGICPDIIMNPHGLKGCD--RITEYKEVPVSYKGSVPSYLEKVLVS 1203
+G V ++ N+S PD M+ G+ G D R Y P++YK P+Y++KV++S
Sbjct: 903 VGEQVNAGEVYINKS--TPDQSMSS-GMPGSDAGRPISYNPTPMTYKLPDPAYIDKVMIS 959
Query: 1204 SNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPH 1263
+ + +IK+L RQTRRPE+GDKFSSRHGQKGV G+IV+Q DMPF + GI PDIIMNPH
Sbjct: 960 ATENENQIIKVLTRQTRRPEVGDKFSSRHGQKGVTGIIVDQADMPFTDQGINPDIIMNPH 1019
Query: 1264 GYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSG 1323
G+PSRMTVGK++EL+AGKAG++ G + GT F GT + + + LI G++Y GKD SG
Sbjct: 1020 GFPSRMTVGKMLELVAGKAGVLSGQHGYGTCFSGTPVEQMTQTLIDKGFSYGGKDYLTSG 1079
Query: 1324 ITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPT-GR 1369
ITGEAL Y+++GP+YYQKLKHMVQDK+H+R+RGPR LTRQPT GR
Sbjct: 1080 ITGEALPFYVFTGPIYYQKLKHMVQDKMHSRARGPRATLTRQPTEGR 1126
Score = 471 (170.9 bits), Expect = 8.8e-139, Sum P(3) = 8.8e-139
Identities = 103/206 (50%), Positives = 133/206 (64%)
Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGXXXXXXXXXXXXQFDI--VN 190
+D DY N ++ Q A ++ D LF DI + FD V
Sbjct: 436 VDDRDYLGNKRLELAGQLLALLFED---LFKKFCFDIKMNIDKVLNKRNRVEAFDAWSVI 492
Query: 191 HMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRK 250
M + IT + AI TGNW+++RF+MER GVT VLSRLSYI+ LGMMTRI+SQFEKTRK
Sbjct: 493 GMHSNHITQGMNRAISTGNWSLKRFRMERAGVTHVLSRLSYIAALGMMTRISSQFEKTRK 552
Query: 251 VSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLK-IMYNIGIEHI 309
VSGPR+LQ SQ+GM+C +DTPEGEACGLVKNLALMTHITT NDE+ +K +++ +G E I
Sbjct: 553 VSGPRALQPSQFGMICLADTPEGEACGLVKNLALMTHITT-NDEEGPIKNLIFMLGAEDI 611
Query: 310 AMFNGEELSSPGVYLVFVNGILAGIT 335
G+E+ +PG Y + +NG +T
Sbjct: 612 QTVGGKEIYAPGSYTISINGTPMALT 637
Score = 372 (136.0 bits), Expect = 8.5e-147, Sum P(5) = 8.5e-147
Identities = 75/136 (55%), Positives = 96/136 (70%)
Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQ 747
G +FDDFL +G +EY+DVNE NDS IA+ E I TTH+EI PFT+LG AG
Sbjct: 705 GTMQFDDFLAQGLVEYVDVNEENDSLIAIYEKDITD-TTTHMEIEPFTILGAVAG----- 758
Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
L+PYPHHNQ+PRNTYQCAMGKQA+G I NQ RID+++Y +VY Q+PMV+
Sbjct: 759 ---------LIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVYPQKPMVK 809
Query: 808 SKTIRITNFHKLPAGK 823
S+TI +T + +LPAG+
Sbjct: 810 SRTIELTKYDQLPAGQ 825
Score = 245 (91.3 bits), Expect = 8.5e-147, Sum P(5) = 8.5e-147
Identities = 49/104 (47%), Positives = 78/104 (75%)
Query: 439 KLRQKRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDM 498
K+ +K+ +Y++T V +A + ++S I+HI V +M F+ KA+Y+A M RR+++A +D +
Sbjct: 377 KINRKQM-SYRRTHVQEAVEAIASVIISHIEVKDMNFRPKAIYVANMARRVLMAKNDAAL 435
Query: 499 LDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELKETNLSGVVN 542
+DDRDY GNKRLELAG LL+L+FED+FK+F ++K N+ V+N
Sbjct: 436 VDDRDYLGNKRLELAGQLLALLFEDLFKKFCFDIK-MNIDKVLN 478
Score = 211 (79.3 bits), Expect = 8.5e-147, Sum P(5) = 8.5e-147
Identities = 44/68 (64%), Positives = 49/68 (72%)
Query: 343 KPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSS 402
+ E EES TPHECRLRD TY+API VD EY RG QRV R + IGRMP+ML+SS
Sbjct: 172 RTEFEES-----TVTPHECRLRDTTYAAPIQVDFEYIRGRQRVRRKGVSIGRMPVMLRSS 226
Query: 403 KCVLRNKT 410
KCVL NKT
Sbjct: 227 KCVLGNKT 234
Score = 180 (68.4 bits), Expect = 8.5e-147, Sum P(5) = 8.5e-147
Identities = 31/60 (51%), Positives = 48/60 (80%)
Query: 113 RDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
+DKW L+ +FLK KGLVK HIDS++Y + V++KK+++++ I SDVD FY+K+ DI++G
Sbjct: 101 KDKWNLLPAFLKVKGLVKQHIDSYNYLVEVQLKKIVESSNTIRSDVDHNFYIKFTDIYLG 160
>TAIR|locus:2153323 [details] [associations]
symbol:NRPC2 "nuclear RNA polymerase C2" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0009560
"embryo sac egg cell differentiation" evidence=RCA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 EMBL:CP002688 GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03021 OMA:DMIMNPH IPI:IPI00530040 RefSeq:NP_199327.4
UniGene:At.9250 ProteinModelPortal:F4KD38 PRIDE:F4KD38
EnsemblPlants:AT5G45140.1 GeneID:834550 KEGG:ath:AT5G45140
Uniprot:F4KD38
Length = 1161
Score = 747 (268.0 bits), Expect = 2.6e-111, Sum P(3) = 2.6e-111
Identities = 141/264 (53%), Positives = 189/264 (71%)
Query: 913 GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
GL+PYPHHNQ+PRNTYQCAMGKQAMG I YNQ NR+DTL+Y LVY QRP++ ++TI +
Sbjct: 692 GLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLNRMDTLLYLLVYPQRPLLTTRTIELVG 751
Query: 973 FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
+ KL AGQNAT+AVMS+SGYDIEDA++MNK+SLDRGFGRC+V + + ++Y N T DR
Sbjct: 752 YDKLGAGQNATVAVMSFSGYDIEDAIVMNKSSLDRGFGRCIVMKKIVAMSQKYDNCTADR 811
Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMP--TISVSAISMATPEY 1090
IL P T + + LD DG+ PGE I + +NK +P T++ +++ +Y
Sbjct: 812 ILIP---QRTGPDAEKMQILDDDGLATPGEIIRPNDIYINKQVPVDTVTKFTSALSDSQY 868
Query: 1091 KEVPVSYKG--SVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
+ +KG +++V + S+ + IK ++R TRRPE+GDKFSSRHGQKGV G+
Sbjct: 869 RPAREYFKGPEGETQVVDRVALCSDKKGQLCIKYIIRHTRRPELGDKFSSRHGQKGVCGI 928
Query: 1149 IVEQEDMPFNESGICPDIIMNPHG 1172
I++QED PF+E GICPD+IMNPHG
Sbjct: 929 IIQQEDFPFSELGICPDLIMNPHG 952
Score = 580 (209.2 bits), Expect = 9.4e-125, Sum P(4) = 9.4e-125
Identities = 107/195 (54%), Positives = 143/195 (73%)
Query: 1180 TEYKEVPVSYKG--SVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV 1237
++Y+ +KG +++V + S+ + IK ++R TRRPE+GDKFSSRHGQKGV
Sbjct: 866 SQYRPAREYFKGPEGETQVVDRVALCSDKKGQLCIKYIIRHTRRPELGDKFSSRHGQKGV 925
Query: 1238 IGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFG- 1296
G+I++QED PF+E GICPD+IMNPHG+PSRMTVGK+IELL KAG+ G + G+AFG
Sbjct: 926 CGIIIQQEDFPFSELGICPDLIMNPHGFPSRMTVGKMIELLGSKAGVSCGRFHYGSAFGE 985
Query: 1297 ----GTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIH 1352
K+ + L+ G++Y GKD+ YSGI+GE +EAYI+ GP+YYQKLKHMV DK+H
Sbjct: 986 RSGHADKVETISATLVEKGFSYSGKDLLYSGISGEPVEAYIFMGPIYYQKLKHMVLDKMH 1045
Query: 1353 ARSRGPRVVLTRQPT 1367
AR GPRV++TRQPT
Sbjct: 1046 ARGSGPRVMMTRQPT 1060
Score = 434 (157.8 bits), Expect = 9.4e-125, Sum P(4) = 9.4e-125
Identities = 91/219 (41%), Positives = 136/219 (62%)
Query: 118 LVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGXXXXX 177
++L + E L K +D DY N ++ Q + ++ D LF +
Sbjct: 343 VMLRRMIEAMLNKDAMDDKDYVGNKRLELSGQLISLLFED---LFKTMLSEAIKNVDHIL 399
Query: 178 XXXXXXXQFDIVNHMRQDT---ITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISG 234
+FD + +D+ I+ L + TGN+ I+RF+M R+G+TQVL+RLS+I
Sbjct: 400 NKPIRASRFDFSQCLNKDSRYSISLGLERTLSTGNFDIKRFRMHRKGMTQVLTRLSFIGS 459
Query: 235 LGMMTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDE 294
+G +T+I+ QFEK+RKVSGPRSLQ SQWGMLCP DTPEGE+CGLVKNLALMTH+TT+ +E
Sbjct: 460 MGFITKISPQFEKSRKVSGPRSLQPSQWGMLCPCDTPEGESCGLVKNLALMTHVTTDEEE 519
Query: 295 KNMLKIMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAG 333
++ + Y +G+ + + + EEL +P +LV +NG++ G
Sbjct: 520 GPLVAMCYKLGVTDLEVLSAEELHTPDSFLVILNGLILG 558
Score = 359 (131.4 bits), Expect = 9.4e-125, Sum P(4) = 9.4e-125
Identities = 78/146 (53%), Positives = 98/146 (67%)
Query: 688 GFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESG----IRPGV------TTHLEIAPFTLL 737
G + FDDF+ +G IEYLDVNE N++ IA+ ES + G TTH+EI PFT+L
Sbjct: 628 GVRTFDDFIRDGLIEYLDVNEENNALIALYESDGTTELDEGAEAAKADTTHIEIEPFTIL 687
Query: 738 GVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYN 797
GV AG L+PYPHHNQ+PRNTYQCAMGKQAMG I YNQ NR+DTL+Y
Sbjct: 688 GVVAG--------------LIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLNRMDTLLYL 733
Query: 798 LVYAQRPMVESKTIRITNFHKLPAGK 823
LVY QRP++ ++TI + + KL AG+
Sbjct: 734 LVYPQRPLLTTRTIELVGYDKLGAGQ 759
Score = 211 (79.3 bits), Expect = 5.4e-115, Sum P(4) = 5.4e-115
Identities = 43/98 (43%), Positives = 63/98 (64%)
Query: 447 TYKKTPVDDAR--DFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDY 504
+Y P D R L +AH+PV + F+ K Y+ VM+RRM+ A+ + D +DD+DY
Sbjct: 304 SYGTPPEKDGRALSILRDLFLAHVPVPDNNFRQKCFYVGVMLRRMIEAMLNKDAMDDKDY 363
Query: 505 YGNKRLELAGSLLSLMFEDVFKRFNSELKETNLSGVVN 542
GNKRLEL+G L+SL+FED+FK SE + N+ ++N
Sbjct: 364 VGNKRLELSGQLISLLFEDLFKTMLSEAIK-NVDHILN 400
Score = 172 (65.6 bits), Expect = 5.4e-115, Sum P(4) = 5.4e-115
Identities = 33/59 (55%), Positives = 45/59 (76%)
Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVG 172
DK++LV FLK +GLVK H+DSF+YFINV I K+++AN+ I S VDP YL++ + VG
Sbjct: 31 DKFQLVPEFLKVRGLVKQHLDSFNYFINVGIHKIVKANSRITSTVDPSIYLRFKKVRVG 89
Score = 172 (65.6 bits), Expect = 5.4e-115, Sum P(4) = 5.4e-115
Identities = 45/115 (39%), Positives = 61/115 (53%)
Query: 303 NIGIEHIAMFNGEELSS--PGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHE 360
N+GI I N S+ P +YL F + G +P I + N PH
Sbjct: 58 NVGIHKIVKANSRITSTVDPSIYLRFKK-VRVG---------EPSII-NVNTVENINPHM 106
Query: 361 CRLRDLTYSAPITVDIEYTRGSQ----RVVRSDLVIGRMPIMLQSSKCVLRNKTE 411
CRL D+TY+API V+IEY GS + + +++IGRMPIML+S +CVL K E
Sbjct: 107 CRLADMTYAAPIFVNIEYVHGSHGNKAKSAKDNVIIGRMPIMLRSCRCVLHGKDE 161
Score = 42 (19.8 bits), Expect = 9.4e-125, Sum P(4) = 9.4e-125
Identities = 10/47 (21%), Positives = 24/47 (51%)
Query: 49 FKQVDFGDSKVVSLRELLSHVTYQKRLYRLTVQPNWLGTVKAVHGTY 95
FK+V G+ ++++ + + + RL +T ++ VHG++
Sbjct: 83 FKKVRVGEPSIINVNTVENINPHMCRLADMTYAAPIFVNIEYVHGSH 129
Score = 42 (19.8 bits), Expect = 2.5e-06, Sum P(3) = 2.5e-06
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 195 DTITNALTAAIQTGNWT-IRRFKMERQGVTQVLSRLSYIS 233
DT+T T+A+ + R + +G TQV+ R++ S
Sbjct: 854 DTVTK-FTSALSDSQYRPAREYFKGPEGETQVVDRVALCS 892
Score = 38 (18.4 bits), Expect = 3.0e-34, Sum P(3) = 3.0e-34
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 724 GVTTHLEIAPFTLLGVC 740
G+ E PF+ LG+C
Sbjct: 927 GIIIQQEDFPFSELGIC 943
Score = 37 (18.1 bits), Expect = 7.1e-64, Sum P(3) = 7.1e-64
Identities = 15/53 (28%), Positives = 24/53 (45%)
Query: 822 GKCQISPGGAEELTARESCHEVLKIIS-FSISVAVFDSVWLGDVKQGVHQLSE 873
G+C + PGG + E +VL I S + + DS G++ V +E
Sbjct: 168 GECPLDPGGYFIIKGTE---KVLLIQEQLSKNRIIIDSDKKGNINASVTSSTE 217
>GENEDB_PFALCIPARUM|PFB0715w [details] [associations]
symbol:PFB0715w "DNA-directed RNA polymerase II
second largest subunit, putative" species:5833 "Plasmodium
falciparum" [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=ISS] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=ISS] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 GO:GO:0006366 EMBL:AE001362 GO:GO:0003899
GO:GO:0005665 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03010 HOGENOM:HOG000222962 RefSeq:XP_001349662.2
ProteinModelPortal:O96236 PRIDE:O96236
EnsemblProtists:PFB0715w:mRNA GeneID:812744 KEGG:pfa:PFB0715w
EuPathDB:PlasmoDB:PF3D7_0215700 ProtClustDB:CLSZ2444926
Uniprot:O96236
Length = 1340
Score = 478 (173.3 bits), Expect = 3.8e-91, Sum P(4) = 3.8e-91
Identities = 92/193 (47%), Positives = 127/193 (65%)
Query: 1179 ITEYK-EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV 1237
+ +YK + +S + + ++ V++SSNS K+ +R R P+IGDKF+SRHGQKG
Sbjct: 1050 LKQYKKDCSLSLRSNENGVIDTVMLSSNSRGNKFAKVKVRSVRIPQIGDKFASRHGQKGT 1109
Query: 1238 IGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGG 1297
IG+ EDMPF+ GI PDIIMNPH PSRMT+G L+E L GK +EG + T F
Sbjct: 1110 IGITYRTEDMPFSSLGIFPDIIMNPHAVPSRMTIGHLVECLTGKVAAIEGGEGDATPFSK 1169
Query: 1298 TKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRG 1357
+ ++ ++L GY G ++ Y+G G L++ I+ GP YYQ+LKHMV+DKIHARSRG
Sbjct: 1170 ITVQEISQKLHNLGYEKYGNEMLYNGHNGRMLKSKIFIGPTYYQRLKHMVEDKIHARSRG 1229
Query: 1358 PRVVLTRQPT-GR 1369
P ++TRQPT GR
Sbjct: 1230 PLTMITRQPTEGR 1242
Score = 328 (120.5 bits), Expect = 3.8e-91, Sum P(4) = 3.8e-91
Identities = 83/252 (32%), Positives = 124/252 (49%)
Query: 914 LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
++P+ HNQ+PRNTYQ AMGKQAMG N R+DTL + L Y Q+P+V +K + F
Sbjct: 730 IIPFSDHNQSPRNTYQSAMGKQAMGIYVTNFNIRLDTLAHLLYYPQKPLVCTKVMEYLRF 789
Query: 974 HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
+LPAG NA +A+M Y+GY+ ED+LIMN++S+DRG R + YR KQ + +
Sbjct: 790 RELPAGINAIVAIMCYTGYNQEDSLIMNQSSIDRGLFRSVFYRTYTSEEKQQGSLIIESF 849
Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
P + + LD DG++APG ++ +++ K P I I
Sbjct: 850 EKPSVRVVKNLKRGDYTKLDDDGLIAPGIRVLGDDIIIGKVSPNIDDEDDIIIEKRNTSS 909
Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDK--FSSRHGQKGVIGL 1148
+ + K S+ + +SN+ + M R I FSS G V+
Sbjct: 910 SSIQIYNKDSISNNNSN---NSNNNMNNMSNMSNMSNIRSSISSNLSFSSNIGSSNVLDT 966
Query: 1149 IVEQEDMPFNES 1160
+ D P N +
Sbjct: 967 L---PDSPINNT 975
Score = 238 (88.8 bits), Expect = 3.8e-91, Sum P(4) = 3.8e-91
Identities = 56/150 (37%), Positives = 83/150 (55%)
Query: 186 FDIVNHMRQ-DTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
FD+ +R IT + + TGNW + K+ R GV QVL+RL+Y S L + R+N+
Sbjct: 447 FDVAGAIRSCSQITQGMQYQLATGNWGKDKDGKVIRTGVAQVLNRLTYSSCLSHLRRLNT 506
Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
+ K++ PR L + WGM+CP +TPEG++ GLVKNL+LM I+ N+ + +
Sbjct: 507 PLGREGKMAKPRQLHNTHWGMICPFETPEGQSVGLVKNLSLMCDISVGTSTNNIYEFLTE 566
Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAG 333
G+E + EL V L F+NG G
Sbjct: 567 WGLESLDEVP-PELMKEKVKL-FLNGKWVG 594
Score = 227 (85.0 bits), Expect = 5.0e-53, Sum P(4) = 5.0e-53
Identities = 43/99 (43%), Positives = 65/99 (65%)
Query: 1075 MPTISVSAISMATPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGD 1134
+PT+++S+ ++ K+ +S + + ++ V++SSNS K+ +R R P+IGD
Sbjct: 1039 IPTLTISSTNVLKQYKKDCSLSLRSNENGVIDTVMLSSNSRGNKFAKVKVRSVRIPQIGD 1098
Query: 1135 KFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
KF+SRHGQKG IG+ EDMPF+ GI PDIIMNPH +
Sbjct: 1099 KFASRHGQKGTIGITYRTEDMPFSSLGIFPDIIMNPHAV 1137
Score = 226 (84.6 bits), Expect = 1.8e-80, Sum P(4) = 1.8e-80
Identities = 56/146 (38%), Positives = 78/146 (53%)
Query: 682 NMHQFLGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVT-----THLEIAPFTL 736
N+ ++ +D + EG IEY+D E + I++ ++ G TH EI P +
Sbjct: 664 NIEKYPETYNWDYLIQEGIIEYIDCEEEETTMISMFIDDLKTGTGYYNNFTHCEIHPSLI 723
Query: 737 LGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMY 796
LGVCA I +P+ HNQ+PRNTYQ AMGKQAMG N R+DTL +
Sbjct: 724 LGVCASI--------------IPFSDHNQSPRNTYQSAMGKQAMGIYVTNFNIRLDTLAH 769
Query: 797 NLVYAQRPMVESKTIRITNFHKLPAG 822
L Y Q+P+V +K + F +LPAG
Sbjct: 770 LLYYPQKPLVCTKVMEYLRFRELPAG 795
Score = 103 (41.3 bits), Expect = 7.1e-81, Sum P(5) = 7.1e-81
Identities = 22/78 (28%), Positives = 42/78 (53%)
Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
A++ L + H+ K+ ++ MI R++LA DDRD++G KRL++AG
Sbjct: 357 AKELLRKEVLPHMGTHPGVESKKSYFIGYMINRLLLAELGRIKEDDRDHFGKKRLDIAGP 416
Query: 516 LLSLMFEDVFKRFNSELK 533
L++ F F++ +++
Sbjct: 417 LMASSFSTYFRKMAKDVR 434
Score = 82 (33.9 bits), Expect = 7.1e-81, Sum P(5) = 7.1e-81
Identities = 24/73 (32%), Positives = 39/73 (53%)
Query: 343 KPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIE---Y-----TRG---SQRVVRSDLV 391
+P +E + P E RLR+LTYS+ I +DIE Y T+ ++ + +
Sbjct: 106 RPFYDEKNLSNKNLWPQEARLRNLTYSSAIYIDIEQSTYIIDEVTKKPVLKEKFIYERIN 165
Query: 392 IGRMPIMLQSSKC 404
+GR+P+ML+S C
Sbjct: 166 LGRIPLMLKSMFC 178
Score = 64 (27.6 bits), Expect = 3.8e-91, Sum P(4) = 3.8e-91
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANI 154
D W ++ SF GLV I+S++ FI +++++ + I
Sbjct: 35 DSWVVIGSFFGSHGLVNQQIESYNDFIEYRMQEIIDEHPKI 75
Score = 59 (25.8 bits), Expect = 1.9e-72, Sum P(4) = 1.9e-72
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 863 DVKQGVHQLSE-EKEPRLLRKFQYFDV---RTPYRLRRLLCW 900
D++Q + + E K+P L KF Y + R P L+ + CW
Sbjct: 138 DIEQSTYIIDEVTKKPVLKEKFIYERINLGRIPLMLKSMFCW 179
Score = 41 (19.5 bits), Expect = 3.4e-61, Sum P(4) = 3.4e-61
Identities = 11/55 (20%), Positives = 25/55 (45%)
Query: 489 MVLALSDPDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELKETNLSGVVNL 543
+++ P++ D+ D KR + S + + +D NS N++ + N+
Sbjct: 885 IIIGKVSPNIDDEDDIIIEKR-NTSSSSIQIYNKDSISNNNSNNSNNNMNNMSNM 938
Score = 37 (18.1 bits), Expect = 1.4e-14, Sum P(4) = 1.4e-14
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 724 GVTTHLEIAPFTLLGV 739
G+T E PF+ LG+
Sbjct: 1111 GITYRTEDMPFSSLGI 1126
>UNIPROTKB|O96236 [details] [associations]
symbol:PFB0715w "DNA-directed RNA polymerase" species:36329
"Plasmodium falciparum 3D7" [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=ISS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISS]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006366 EMBL:AE001362
GO:GO:0003899 GO:GO:0005665 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03010 HOGENOM:HOG000222962
RefSeq:XP_001349662.2 ProteinModelPortal:O96236 PRIDE:O96236
EnsemblProtists:PFB0715w:mRNA GeneID:812744 KEGG:pfa:PFB0715w
EuPathDB:PlasmoDB:PF3D7_0215700 ProtClustDB:CLSZ2444926
Uniprot:O96236
Length = 1340
Score = 478 (173.3 bits), Expect = 3.8e-91, Sum P(4) = 3.8e-91
Identities = 92/193 (47%), Positives = 127/193 (65%)
Query: 1179 ITEYK-EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV 1237
+ +YK + +S + + ++ V++SSNS K+ +R R P+IGDKF+SRHGQKG
Sbjct: 1050 LKQYKKDCSLSLRSNENGVIDTVMLSSNSRGNKFAKVKVRSVRIPQIGDKFASRHGQKGT 1109
Query: 1238 IGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGG 1297
IG+ EDMPF+ GI PDIIMNPH PSRMT+G L+E L GK +EG + T F
Sbjct: 1110 IGITYRTEDMPFSSLGIFPDIIMNPHAVPSRMTIGHLVECLTGKVAAIEGGEGDATPFSK 1169
Query: 1298 TKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRG 1357
+ ++ ++L GY G ++ Y+G G L++ I+ GP YYQ+LKHMV+DKIHARSRG
Sbjct: 1170 ITVQEISQKLHNLGYEKYGNEMLYNGHNGRMLKSKIFIGPTYYQRLKHMVEDKIHARSRG 1229
Query: 1358 PRVVLTRQPT-GR 1369
P ++TRQPT GR
Sbjct: 1230 PLTMITRQPTEGR 1242
Score = 328 (120.5 bits), Expect = 3.8e-91, Sum P(4) = 3.8e-91
Identities = 83/252 (32%), Positives = 124/252 (49%)
Query: 914 LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
++P+ HNQ+PRNTYQ AMGKQAMG N R+DTL + L Y Q+P+V +K + F
Sbjct: 730 IIPFSDHNQSPRNTYQSAMGKQAMGIYVTNFNIRLDTLAHLLYYPQKPLVCTKVMEYLRF 789
Query: 974 HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
+LPAG NA +A+M Y+GY+ ED+LIMN++S+DRG R + YR KQ + +
Sbjct: 790 RELPAGINAIVAIMCYTGYNQEDSLIMNQSSIDRGLFRSVFYRTYTSEEKQQGSLIIESF 849
Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPEY 1090
P + + LD DG++APG ++ +++ K P I I
Sbjct: 850 EKPSVRVVKNLKRGDYTKLDDDGLIAPGIRVLGDDIIIGKVSPNIDDEDDIIIEKRNTSS 909
Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDK--FSSRHGQKGVIGL 1148
+ + K S+ + +SN+ + M R I FSS G V+
Sbjct: 910 SSIQIYNKDSISNNNSN---NSNNNMNNMSNMSNMSNIRSSISSNLSFSSNIGSSNVLDT 966
Query: 1149 IVEQEDMPFNES 1160
+ D P N +
Sbjct: 967 L---PDSPINNT 975
Score = 238 (88.8 bits), Expect = 3.8e-91, Sum P(4) = 3.8e-91
Identities = 56/150 (37%), Positives = 83/150 (55%)
Query: 186 FDIVNHMRQ-DTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
FD+ +R IT + + TGNW + K+ R GV QVL+RL+Y S L + R+N+
Sbjct: 447 FDVAGAIRSCSQITQGMQYQLATGNWGKDKDGKVIRTGVAQVLNRLTYSSCLSHLRRLNT 506
Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
+ K++ PR L + WGM+CP +TPEG++ GLVKNL+LM I+ N+ + +
Sbjct: 507 PLGREGKMAKPRQLHNTHWGMICPFETPEGQSVGLVKNLSLMCDISVGTSTNNIYEFLTE 566
Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAG 333
G+E + EL V L F+NG G
Sbjct: 567 WGLESLDEVP-PELMKEKVKL-FLNGKWVG 594
Score = 227 (85.0 bits), Expect = 5.0e-53, Sum P(4) = 5.0e-53
Identities = 43/99 (43%), Positives = 65/99 (65%)
Query: 1075 MPTISVSAISMATPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGD 1134
+PT+++S+ ++ K+ +S + + ++ V++SSNS K+ +R R P+IGD
Sbjct: 1039 IPTLTISSTNVLKQYKKDCSLSLRSNENGVIDTVMLSSNSRGNKFAKVKVRSVRIPQIGD 1098
Query: 1135 KFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
KF+SRHGQKG IG+ EDMPF+ GI PDIIMNPH +
Sbjct: 1099 KFASRHGQKGTIGITYRTEDMPFSSLGIFPDIIMNPHAV 1137
Score = 226 (84.6 bits), Expect = 1.8e-80, Sum P(4) = 1.8e-80
Identities = 56/146 (38%), Positives = 78/146 (53%)
Query: 682 NMHQFLGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVT-----THLEIAPFTL 736
N+ ++ +D + EG IEY+D E + I++ ++ G TH EI P +
Sbjct: 664 NIEKYPETYNWDYLIQEGIIEYIDCEEEETTMISMFIDDLKTGTGYYNNFTHCEIHPSLI 723
Query: 737 LGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMY 796
LGVCA I +P+ HNQ+PRNTYQ AMGKQAMG N R+DTL +
Sbjct: 724 LGVCASI--------------IPFSDHNQSPRNTYQSAMGKQAMGIYVTNFNIRLDTLAH 769
Query: 797 NLVYAQRPMVESKTIRITNFHKLPAG 822
L Y Q+P+V +K + F +LPAG
Sbjct: 770 LLYYPQKPLVCTKVMEYLRFRELPAG 795
Score = 103 (41.3 bits), Expect = 7.1e-81, Sum P(5) = 7.1e-81
Identities = 22/78 (28%), Positives = 42/78 (53%)
Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
A++ L + H+ K+ ++ MI R++LA DDRD++G KRL++AG
Sbjct: 357 AKELLRKEVLPHMGTHPGVESKKSYFIGYMINRLLLAELGRIKEDDRDHFGKKRLDIAGP 416
Query: 516 LLSLMFEDVFKRFNSELK 533
L++ F F++ +++
Sbjct: 417 LMASSFSTYFRKMAKDVR 434
Score = 82 (33.9 bits), Expect = 7.1e-81, Sum P(5) = 7.1e-81
Identities = 24/73 (32%), Positives = 39/73 (53%)
Query: 343 KPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIE---Y-----TRG---SQRVVRSDLV 391
+P +E + P E RLR+LTYS+ I +DIE Y T+ ++ + +
Sbjct: 106 RPFYDEKNLSNKNLWPQEARLRNLTYSSAIYIDIEQSTYIIDEVTKKPVLKEKFIYERIN 165
Query: 392 IGRMPIMLQSSKC 404
+GR+P+ML+S C
Sbjct: 166 LGRIPLMLKSMFC 178
Score = 64 (27.6 bits), Expect = 3.8e-91, Sum P(4) = 3.8e-91
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANI 154
D W ++ SF GLV I+S++ FI +++++ + I
Sbjct: 35 DSWVVIGSFFGSHGLVNQQIESYNDFIEYRMQEIIDEHPKI 75
Score = 59 (25.8 bits), Expect = 1.9e-72, Sum P(4) = 1.9e-72
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 863 DVKQGVHQLSE-EKEPRLLRKFQYFDV---RTPYRLRRLLCW 900
D++Q + + E K+P L KF Y + R P L+ + CW
Sbjct: 138 DIEQSTYIIDEVTKKPVLKEKFIYERINLGRIPLMLKSMFCW 179
Score = 41 (19.5 bits), Expect = 3.4e-61, Sum P(4) = 3.4e-61
Identities = 11/55 (20%), Positives = 25/55 (45%)
Query: 489 MVLALSDPDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELKETNLSGVVNL 543
+++ P++ D+ D KR + S + + +D NS N++ + N+
Sbjct: 885 IIIGKVSPNIDDEDDIIIEKR-NTSSSSIQIYNKDSISNNNSNNSNNNMNNMSNM 938
Score = 37 (18.1 bits), Expect = 1.4e-14, Sum P(4) = 1.4e-14
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 724 GVTTHLEIAPFTLLGV 739
G+T E PF+ LG+
Sbjct: 1111 GITYRTEDMPFSSLGI 1126
>TAIR|locus:2119013 [details] [associations]
symbol:NRPB2 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA;ISS] [GO:0009793 "embryo development
ending in seed dormancy" evidence=NAS] [GO:0032549 "ribonucleoside
binding" evidence=IEA] [GO:0016591 "DNA-directed RNA polymerase II,
holoenzyme" evidence=ISS] [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=IPI] [GO:0005829 "cytosol" evidence=IDA]
[GO:0009506 "plasmodesma" evidence=IDA] [GO:0000394 "RNA splicing,
via endonucleolytic cleavage and ligation" evidence=RCA]
[GO:0000956 "nuclear-transcribed mRNA catabolic process"
evidence=RCA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=RCA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005829 GO:GO:0009506
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0006351 EMBL:AL161555 EMBL:AL035527 GO:GO:0003899
GO:GO:0005665 eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 EMBL:Z19120 EMBL:Z19121 IPI:IPI00524372
PIR:T05846 RefSeq:NP_193902.1 UniGene:At.112
ProteinModelPortal:P38420 STRING:P38420 PaxDb:P38420 PRIDE:P38420
EnsemblPlants:AT4G21710.1 GeneID:828259 KEGG:ath:AT4G21710
TAIR:At4g21710 HOGENOM:HOG000218612 InParanoid:P38420 KO:K03010
OMA:IMIVFRA PhylomeDB:P38420 ProtClustDB:CLSN2685591
Genevestigator:P38420 GermOnline:AT4G21710 Uniprot:P38420
Length = 1188
Score = 530 (191.6 bits), Expect = 3.2e-76, Sum P(3) = 3.2e-76
Identities = 111/271 (40%), Positives = 171/271 (63%)
Query: 914 LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
++P+P HNQ+PRNTYQ AMGKQAMG N Q R+DTL Y L Y Q+P+V ++ + +F
Sbjct: 718 IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 777
Query: 974 HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
+LPAG NA +A+ YSGY+ ED++IMN++S+DRGF R L +R+ Y ++ ++
Sbjct: 778 RQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRS-------YRDE--EKK 828
Query: 1034 LGPLLEADTRKPV------YRHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
+G L++ D +P RH + LD DG+ PG ++ V++ K+ P IS
Sbjct: 829 MGTLVKEDFGRPDRGSTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP-ISQDEAQ 887
Query: 1085 MATPEY--KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQ 1142
+ Y ++ +S + S +++VL+++N++ +K+ +R R P+IGDKFSSRHGQ
Sbjct: 888 GQSSRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 947
Query: 1143 KGVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
KG +G+ QEDMP+ G+ PDII+NPH +
Sbjct: 948 KGTVGMTYTQEDMPWTIEGVTPDIIVNPHAI 978
Score = 453 (164.5 bits), Expect = 1.1e-86, Sum P(4) = 1.1e-86
Identities = 101/250 (40%), Positives = 143/250 (57%)
Query: 1129 RPEIGDKFSSRHGQ------KGVI--GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRIT 1180
RP+ G RHG G+ G V ED+ ++ P I R T
Sbjct: 839 RPDRGSTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKT--TP--ISQDEAQGQSSRYT 894
Query: 1181 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1240
++ +S + S +++VL+++N++ +K+ +R R P+IGDKFSSRHGQKG +G+
Sbjct: 895 R-RDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGM 953
Query: 1241 IVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKL 1300
QEDMP+ G+ PDII+NPH PSRMT+G+LIE + GK G + T F +
Sbjct: 954 TYTQEDMPWTIEGVTPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTV 1013
Query: 1301 VDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRV 1360
++ + L + GY +G + Y+G TG L A I+ GP YYQ+LKHMV DKIH+R RGP
Sbjct: 1014 DNISKALHKCGYQMRGFERMYNGHTGRPLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQ 1073
Query: 1361 VLTRQPT-GR 1369
+LTRQP GR
Sbjct: 1074 ILTRQPAEGR 1083
Score = 288 (106.4 bits), Expect = 1.1e-86, Sum P(4) = 1.1e-86
Identities = 63/146 (43%), Positives = 89/146 (60%)
Query: 192 MRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKV 251
++ TIT+ L ++ TGNW R GV+QVL+RL+Y S L + R+NS + K+
Sbjct: 440 IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKL 499
Query: 252 SGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAM 311
+ PR L SQWGM+CP++TPEG+ACGLVKNLALM +IT + +L+ + G E
Sbjct: 500 AKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTE---- 555
Query: 312 FNGEELSS---PGVYLVFVNGILAGI 334
N EE+S P +FVNG+ G+
Sbjct: 556 -NFEEISPSVIPQATKIFVNGMWVGV 580
Score = 229 (85.7 bits), Expect = 1.1e-86, Sum P(4) = 1.1e-86
Identities = 57/135 (42%), Positives = 78/135 (57%)
Query: 698 EGKIEYLDVNEGNDSHIAVS-----ESGIRP--GVT---THLEIAPFTLLGVCAGIELLQ 747
+G IEY+D E + I+++ ++ +RP T TH EI P +LGVCA I
Sbjct: 663 KGFIEYIDTEEEETTMISMTISDLVQARLRPEEAYTENYTHCEIHPSLILGVCASI---- 718
Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
+P+P HNQ+PRNTYQ AMGKQAMG N Q R+DTL Y L Y Q+P+V
Sbjct: 719 ----------IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVT 768
Query: 808 SKTIRITNFHKLPAG 822
++ + +F +LPAG
Sbjct: 769 TRAMEHLHFRQLPAG 783
Score = 133 (51.9 bits), Expect = 5.1e-77, Sum P(5) = 5.1e-77
Identities = 29/85 (34%), Positives = 46/85 (54%)
Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
K+ + ARD L + H+ + KA Y +I R++L DDRD+YGNK
Sbjct: 337 KEKRIKYARDILQKEMLPHVGIGEHCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNK 396
Query: 509 RLELAGSLLSLMFEDVFKRFNSELK 533
RL+LAG LL +F +F++ +++
Sbjct: 397 RLDLAGPLLGGLFRMLFRKLTRDVR 421
Score = 107 (42.7 bits), Expect = 5.1e-77, Sum P(5) = 5.1e-77
Identities = 30/78 (38%), Positives = 42/78 (53%)
Query: 343 KPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIE---YTRG--SQRVVRSD----LVIG 393
KP + ES T P RLR+LTYSAP+ VD+ +G + V + + IG
Sbjct: 97 KPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIG 156
Query: 394 RMPIMLQSSKCVLRNKTE 411
++PIML+SS C L +E
Sbjct: 157 KVPIMLRSSYCTLFQNSE 174
Score = 93 (37.8 bits), Expect = 1.1e-86, Sum P(4) = 1.1e-86
Identities = 18/49 (36%), Positives = 32/49 (65%)
Query: 108 DSPEI--RDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANI 154
D EI D W ++ ++ +EKGLV+ +DSFD FI +++++ +A+I
Sbjct: 17 DDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADI 65
>UNIPROTKB|I3LGN1 [details] [associations]
symbol:LOC100737037 "DNA-directed RNA polymerase"
species:9823 "Sus scrofa" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
GeneTree:ENSGT00690000102214 EMBL:CU914657
Ensembl:ENSSSCT00000028672 OMA:MSYEGYN Uniprot:I3LGN1
Length = 425
Score = 862 (308.5 bits), Expect = 1.8e-85, P = 1.8e-85
Identities = 158/225 (70%), Positives = 193/225 (85%)
Query: 952 MYNLVYAQRPMVESKTIRITNFHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGR 1011
MY L Y Q+PMV++KTI + F KLPAGQNAT+AVMSYSGYDIEDAL++NKASLDRGFGR
Sbjct: 1 MYLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGR 60
Query: 1012 CLVYRNSKCVLKQYPNQTHDRILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLV 1071
CLVY+N+KC LK+Y NQT D+++GP+L+A TRKP++RH LD DGI +PGE++ +QVLV
Sbjct: 61 CLVYKNAKCTLKRYTNQTFDKVMGPVLDAATRKPIWRHEILDADGICSPGEKVENKQVLV 120
Query: 1072 NKSMPTISVSAISMAT----PEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQT 1127
NKSMPT++ + + P+YK+VP++YKG+ SY+EKV++SSN+EDAFLIKMLLRQT
Sbjct: 121 NKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQT 180
Query: 1128 RRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHG 1172
RRPEIGDKFSSRHGQKGV GLIV QEDMPF +SGICPDIIMNPHG
Sbjct: 181 RRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHG 225
Score = 806 (288.8 bits), Expect = 3.2e-86, Sum P(2) = 3.2e-86
Identities = 156/221 (70%), Positives = 182/221 (82%)
Query: 1150 VEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDA 1209
VE + + N+S P + P + +YK+VP++YKG+ SY+EKV++SSN+EDA
Sbjct: 113 VENKQVLVNKS--MPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAEDA 170
Query: 1210 FLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRM 1269
FLIKMLLRQTRRPEIGDKFSSRHGQKGV GLIV QEDMPF +SGICPDIIMNPHG+PSRM
Sbjct: 171 FLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRM 230
Query: 1270 TVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEAL 1329
TVGKLIELLAGKAG+++G + GTAFGG+K+ DV E+L+RHGYNY GKD SGITGE L
Sbjct: 231 TVGKLIELLAGKAGVLDGRFHYGTAFGGSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPL 290
Query: 1330 EAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPT-GR 1369
EAYIY GPVYYQKLKHMV DK+HAR+RGPR VLTRQPT GR
Sbjct: 291 EAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGR 331
Score = 92 (37.4 bits), Expect = 3.2e-86, Sum P(2) = 3.2e-86
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 795 MYNLVYAQRPMVESKTIRITNFHKLPAGK 823
MY L Y Q+PMV++KTI + F KLPAG+
Sbjct: 1 MYLLAYPQKPMVKTKTIELIEFEKLPAGQ 29
>WB|WBGene00016140 [details] [associations]
symbol:rpb-2 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0008406 "gonad development" evidence=IMP] [GO:0016477 "cell
migration" evidence=IMP] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005634 GO:GO:0008340
GO:GO:0009792 GO:GO:0016477 GO:GO:0008406 GO:GO:0002119
GO:GO:0046872 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
EMBL:FO080680 eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03010 OMA:IMIVFRA EMBL:U10333 PIR:E88445
PIR:T43701 RefSeq:NP_498047.1 ProteinModelPortal:Q10578 SMR:Q10578
STRING:Q10578 PaxDb:Q10578 EnsemblMetazoa:C26E6.4.1
EnsemblMetazoa:C26E6.4.2 GeneID:175668 KEGG:cel:CELE_C26E6.4
CTD:175668 WormBase:C26E6.4 GeneTree:ENSGT00690000102234
HOGENOM:HOG000222962 InParanoid:Q10578 NextBio:889138
Uniprot:Q10578
Length = 1193
Score = 533 (192.7 bits), Expect = 2.7e-73, Sum P(3) = 2.7e-73
Identities = 108/266 (40%), Positives = 168/266 (63%)
Query: 914 LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
++P+P HNQ+PRNTYQ AMGKQAMG N R+DTL + L Y Q+P+V ++++ F
Sbjct: 716 IIPFPDHNQSPRNTYQSAMGKQAMGVYTTNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRF 775
Query: 974 HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
++LPAG NA +A++SYSGY+ ED++IMN +++DRG R + YR+ + N + I
Sbjct: 776 NELPAGINAIVAILSYSGYNQEDSVIMNNSAIDRGLFRSVFYRSYRDNEANLDNANEELI 835
Query: 1034 LGPLLE--ADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKS--MPTIS--VSAISMAT 1087
P E + R +Y LD+DGI++PG ++ V++ K+ +P I + A
Sbjct: 836 EKPTREKCSGMRHSLYDK--LDEDGIISPGMRVSGDDVIIGKTVALPDIDDDLDASGKKY 893
Query: 1088 PEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
P+ ++ + S +++V++S NS+ +K+ +R R P+IGDKF+SRHGQKG +G
Sbjct: 894 PK-RDASTFLRSSETGIVDQVMLSLNSDGNKFVKIRMRSVRLPQIGDKFASRHGQKGTMG 952
Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
++ QEDMPF G+ PDII+NPH +
Sbjct: 953 IMYRQEDMPFTAEGLTPDIIINPHAV 978
Score = 462 (167.7 bits), Expect = 1.6e-84, Sum P(4) = 1.6e-84
Identities = 99/255 (38%), Positives = 149/255 (58%)
Query: 1121 KMLLRQTRRPEIGDKFS--SRHGQKGVI--GLIVEQEDMPFNESGICPDIIMNPHGLKGC 1176
+++ + TR G + S + + G+I G+ V +D+ ++ PDI L
Sbjct: 833 ELIEKPTREKCSGMRHSLYDKLDEDGIISPGMRVSGDDVIIGKTVALPDI---DDDLDAS 889
Query: 1177 DRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKG 1236
+ ++ + S +++V++S NS+ +K+ +R R P+IGDKF+SRHGQKG
Sbjct: 890 GKKYPKRDASTFLRSSETGIVDQVMLSLNSDGNKFVKIRMRSVRLPQIGDKFASRHGQKG 949
Query: 1237 VIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFG 1296
+G++ QEDMPF G+ PDII+NPH PSRMT+G LIE L GK +G + T F
Sbjct: 950 TMGIMYRQEDMPFTAEGLTPDIIINPHAVPSRMTIGHLIECLQGKLSANKGEIGDATPFN 1009
Query: 1297 GTKLVD-VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARS 1355
T V + L +GY+ +G ++ Y+G TG+ L I+ GP YYQ+LKHMV DKIH+R+
Sbjct: 1010 DTVNVQKISGLLCEYGYHLRGNEVMYNGHTGKKLTTQIFFGPTYYQRLKHMVDDKIHSRA 1069
Query: 1356 RGPRVVLTRQPT-GR 1369
RGP ++ RQP GR
Sbjct: 1070 RGPIQMMNRQPMEGR 1084
Score = 268 (99.4 bits), Expect = 1.6e-84, Sum P(4) = 1.6e-84
Identities = 62/153 (40%), Positives = 93/153 (60%)
Query: 192 MRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRK 250
++ TIT LT ++ TGNW ++ R GV+QVL+RL+Y + L + R NS + K
Sbjct: 441 VKTSTITRGLTYSLATGNWGDQKKAHQSRAGVSQVLNRLTYTATLSHLRRANSPIGREGK 500
Query: 251 VSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIA 310
++ PR L +QWGM+CP++TPEG+A GLVKNLALM +I+ + + +L+ + E +
Sbjct: 501 LAKPRQLHNTQWGMVCPAETPEGQAVGLVKNLALMAYISVGSLPEPILEFL-----EEWS 555
Query: 311 MFNGEELSSPGVY---LVFVNGILAGITCHHKE 340
M N EE+S + +FVNG GI H+E
Sbjct: 556 MENLEEVSPSAIADATKIFVNGAWVGI---HRE 585
Score = 230 (86.0 bits), Expect = 1.6e-84, Sum P(4) = 1.6e-84
Identities = 55/135 (40%), Positives = 75/135 (55%)
Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPG----VTTHLEIAPFTLLGVCAGIELLQ 747
+ D + G +E +D E S IA+ +R G TH EI P +LGVCA I
Sbjct: 661 WSDLVGGGVVELIDSMEEETSMIAMMPEDLRSGGYCDTHTHCEIHPAMILGVCASI---- 716
Query: 748 YNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
+P+P HNQ+PRNTYQ AMGKQAMG N R+DTL + L Y Q+P+V
Sbjct: 717 ----------IPFPDHNQSPRNTYQSAMGKQAMGVYTTNFHVRMDTLAHVLYYPQKPLVT 766
Query: 808 SKTIRITNFHKLPAG 822
++++ F++LPAG
Sbjct: 767 TRSMEYLRFNELPAG 781
Score = 146 (56.5 bits), Expect = 3.7e-79, Sum P(5) = 3.7e-79
Identities = 30/80 (37%), Positives = 46/80 (57%)
Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
AR+ L + H+ V KA ++ M+ R++LA LDDRD+ GNKRL+LAG
Sbjct: 345 AREILQKELLPHVGVSEHCETKKAFFIGYMVHRLLLAALGRRELDDRDHIGNKRLDLAGP 404
Query: 516 LLSLMFEDVFKRFNSELKET 535
LL+ +F +F+ E++ T
Sbjct: 405 LLAFLFRSLFRNLLKEMRMT 424
Score = 115 (45.5 bits), Expect = 3.7e-79, Sum P(5) = 3.7e-79
Identities = 25/58 (43%), Positives = 38/58 (65%)
Query: 358 PHECRLRDLTYSAPITVDIE--YTRGSQRV--VRSDLVIGRMPIMLQSSKCVLRNKTE 411
P+E RLR+LTY++P+ VDI TR V + +G++P+ML+SS C+L N T+
Sbjct: 117 PNEARLRNLTYASPLYVDITKVVTRDDSATEKVYDKVFVGKVPVMLRSSYCMLSNMTD 174
Score = 82 (33.9 bits), Expect = 1.6e-84, Sum P(4) = 1.6e-84
Identities = 11/34 (32%), Positives = 25/34 (73%)
Query: 116 WKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQ 149
W ++ ++ EKGLV+ +DSFD F+ + ++++++
Sbjct: 34 WVVISAYFDEKGLVRQQLDSFDEFVQMNVQRIVE 67
Score = 39 (18.8 bits), Expect = 1.6e-20, Sum P(3) = 1.6e-20
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 528 FNSELKETNLSGVVNLVSGWWFELKYGNKI-YIRSPSRKLLAAGFSGP 574
FN + +SG L+ + + L+ GN++ Y +KL F GP
Sbjct: 1008 FNDTVNVQKISG---LLCEYGYHLR-GNEVMYNGHTGKKLTTQIFFGP 1051
Score = 38 (18.4 bits), Expect = 6.1e-80, Sum P(4) = 6.1e-80
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 39 GLQAILFLPLFKQ-----VDFGDSKVVSLRELLSHVTY 71
G + I LP KQ + F VS R++L H+ Y
Sbjct: 259 GQRIIGILPYIKQEIPIMIVFRALGFVSDRDILGHIIY 296
Score = 38 (18.4 bits), Expect = 1.7e-64, Sum P(4) = 1.7e-64
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 1032 RILGPLLEADTRKPVYRHRALDQ 1054
R+ PLL + +K + R +DQ
Sbjct: 626 RVCRPLLIVENQKLALKKRHIDQ 648
>DICTYBASE|DDB_G0288257 [details] [associations]
symbol:rpb2 "RNA polymerase II core subunit"
species:44689 "Dictyostelium discoideum" [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA;ISS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=ISS] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 dictyBase:DDB_G0288257 PANTHER:PTHR20856
GO:GO:0046872 GO:GO:0003677 GenomeReviews:CM000154_GR GO:GO:0006366
EMBL:AAFI02000109 GO:GO:0003899 GO:GO:0005665 HSSP:P08518
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03010 OMA:IMIVFRA RefSeq:XP_636812.1 STRING:Q54J75 PRIDE:Q54J75
EnsemblProtists:DDB0216277 GeneID:8626529 KEGG:ddi:DDB_G0288257
ProtClustDB:CLSZ2429137 Uniprot:Q54J75
Length = 1170
Score = 512 (185.3 bits), Expect = 4.0e-71, Sum P(3) = 4.0e-71
Identities = 105/266 (39%), Positives = 165/266 (62%)
Query: 914 LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
++P+P HNQ+PRNTYQ AMGKQAMG N Q R+DT+ + L Y Q+P+V ++++ +F
Sbjct: 706 IIPFPDHNQSPRNTYQAAMGKQAMGVYITNYQLRMDTMAHVLFYPQKPLVTTRSMEYLHF 765
Query: 974 HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
+LPAGQN +A+ YSGY+ ED++I+N++++DRG R + YR K K+ + +
Sbjct: 766 RELPAGQNVCVAIACYSGYNQEDSVILNQSAIDRGLFRSMFYRAYKDEQKKQTSLMEEVF 825
Query: 1034 LGPLLEADTRKPVYRHRA---LDQDGIVAPGEQICERQVLVNKSMPTI-SVSAISMATPE 1089
P E DT + RH + +D DG+VAPG ++ +++ K+ P S + T
Sbjct: 826 EKP--ERDTCAGM-RHGSYEKIDDDGLVAPGVRVAGDDIIIGKTTPLPPSDDDLGPKTRR 882
Query: 1090 Y--KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
+ ++ + + S +++V+++++ E K+ +R R P+IGDKFSSRHGQKG G
Sbjct: 883 HTKRDSSTALRSSETGIVDQVILTTSGEGFKFCKVRVRSMRVPQIGDKFSSRHGQKGTCG 942
Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
+ QED+PF GI PDII+NPH +
Sbjct: 943 MAYRQEDLPFTVEGIVPDIIVNPHAI 968
Score = 452 (164.2 bits), Expect = 4.1e-84, Sum P(4) = 4.1e-84
Identities = 86/188 (45%), Positives = 121/188 (64%)
Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
++ + + S +++V+++++ E K+ +R R P+IGDKFSSRHGQKG G+
Sbjct: 886 RDSSTALRSSETGIVDQVILTTSGEGFKFCKVRVRSMRVPQIGDKFSSRHGQKGTCGMAY 945
Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
QED+PF GI PDII+NPH PSRMT+G+LIE L GK G+ + T F +
Sbjct: 946 RQEDLPFTVEGIVPDIIVNPHAIPSRMTIGQLIECLLGKVSASTGDEGDATPFTDVTVEA 1005
Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
+ + L + GY G ++ Y+G TG ++A I+ GP YYQ+LKHMV DKIH+RSRGP +L
Sbjct: 1006 ISQALHKIGYQMTGHEVMYNGHTGRRMDAQIFIGPTYYQRLKHMVDDKIHSRSRGPVQIL 1065
Query: 1363 TRQPT-GR 1369
TRQP GR
Sbjct: 1066 TRQPVEGR 1073
Score = 269 (99.8 bits), Expect = 4.1e-84, Sum P(4) = 4.1e-84
Identities = 57/156 (36%), Positives = 96/156 (61%)
Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQ 244
+F + ++ TIT+ L ++ TGNW + + GV QVL+RL++ S L + R+N+
Sbjct: 426 EFIASSAVKSKTITSGLKYSLATGNWGSSKSGGTKSGVAQVLNRLTFASTLSHLRRLNTP 485
Query: 245 FEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNI 304
+ K++ PR L + WG++CPS+TPEG+ACGLVKNLA+M++I+ + + +L+ +
Sbjct: 486 IGREGKLAKPRQLHNTHWGIVCPSETPEGQACGLVKNLAMMSYISVGSASQPILEFLEEW 545
Query: 305 GIEHIAMFNGEELSSP-GVYLVFVNGILAGITCHHK 339
E++ + +LSS +FVNG+ GI HH+
Sbjct: 546 TTENLEEIS--DLSSIFSATKIFVNGMWVGI--HHQ 577
Score = 235 (87.8 bits), Expect = 4.1e-84, Sum P(4) = 4.1e-84
Identities = 54/140 (38%), Positives = 78/140 (55%)
Query: 691 RFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRP-------GVTTHLEIAPFTLLGVCAGI 743
++ D L EG +EY+D E IA++ + P TH EI P +LG+C I
Sbjct: 647 KWQDLLSEGIVEYIDAEEEETVLIAMTPEDLVPMPNEQIVHTYTHCEIHPSMILGICCSI 706
Query: 744 ELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQR 803
+P+P HNQ+PRNTYQ AMGKQAMG N Q R+DT+ + L Y Q+
Sbjct: 707 --------------IPFPDHNQSPRNTYQAAMGKQAMGVYITNYQLRMDTMAHVLFYPQK 752
Query: 804 PMVESKTIRITNFHKLPAGK 823
P+V ++++ +F +LPAG+
Sbjct: 753 PLVTTRSMEYLHFRELPAGQ 772
Score = 143 (55.4 bits), Expect = 7.7e-79, Sum P(5) = 7.7e-79
Identities = 28/78 (35%), Positives = 44/78 (56%)
Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
AR+ L + H+ V KA Y + R++LA + LDDRD++ NKRL+LAG
Sbjct: 337 AREVLQKEMLPHVSVAEFYETKKAFYFGYITHRLLLASLERRPLDDRDHFANKRLDLAGP 396
Query: 516 LLSLMFEDVFKRFNSELK 533
LL +F +FK+ +++
Sbjct: 397 LLGTLFRQLFKKLTKDVR 414
Score = 120 (47.3 bits), Expect = 7.7e-79, Sum P(5) = 7.7e-79
Identities = 43/153 (28%), Positives = 70/153 (45%)
Query: 315 EELSSPGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHECRLRDLTYSAPITV 374
E PG +V N + + KP E ++Q TP++ R+R+LTYSAP+ V
Sbjct: 67 ESQHHPGQAVVSNNVSTFSVKFGQIYLSKPTAEID-GVSQQVTPNQARIRNLTYSAPLFV 125
Query: 375 DIEYT-------RGSQR---VVRSDLVIGRMPIMLQSSKCVL-----RNKTEYXXXXXXX 419
DI T +G +R V + IG++PIML+S C+L R+ T
Sbjct: 126 DITKTVMTGSKSKGDERRTDEVLKRIFIGKVPIMLRSQYCMLNEADDRDLTTMGECSFDQ 185
Query: 420 XXXXVTMHSQRTSPLLSCKKLRQKRFQTYKKTP 452
+ S++ L++ +K+ +KK+P
Sbjct: 186 GGYFIINGSEKV--LIAQEKMNNNHVYVFKKSP 216
Score = 82 (33.9 bits), Expect = 4.1e-84, Sum P(4) = 4.1e-84
Identities = 18/61 (29%), Positives = 36/61 (59%)
Query: 98 MVTDETSKLKDSPEI----RDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANAN 153
M+ D++ +D+P D W ++ ++ +EKGLV+ +DSFD FI +++++ +
Sbjct: 5 MMNDDS---QDNPHADISQEDVWTVISAYFQEKGLVRQQLDSFDEFIQNTMQEIIDESPP 61
Query: 154 I 154
I
Sbjct: 62 I 62
>UNIPROTKB|I3L6M3 [details] [associations]
symbol:LOC100737037 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR007120
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
GeneTree:ENSGT00690000102214 EMBL:CU683880 EMBL:CU914657
Ensembl:ENSSSCT00000030129 OMA:LLNTTEC Uniprot:I3L6M3
Length = 232
Score = 827 (296.2 bits), Expect = 1.2e-81, P = 1.2e-81
Identities = 152/217 (70%), Positives = 187/217 (86%)
Query: 932 MGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGQNATIAVMSYSG 991
MGKQAMG IGYNQ+NRIDTLMY L Y Q+PMV++KTI + F KLPAGQNAT+AVMSYSG
Sbjct: 1 MGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSG 60
Query: 992 YDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRILGPLLEADTRKPVYRHRA 1051
YDIEDAL++NKASLDRGFGRCLVY+N+KC LK+Y NQT D+++GP+L+A TRKP++RH
Sbjct: 61 YDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPVLDAATRKPIWRHEI 120
Query: 1052 LDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT----PEYKEVPVSYKGSVPSYLEK 1107
LD DGI +PGE++ +QVLVNKSMPT++ + + P+YK+VP++YKG+ SY+EK
Sbjct: 121 LDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEK 180
Query: 1108 VLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKG 1144
V++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKG
Sbjct: 181 VMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKG 217
Score = 254 (94.5 bits), Expect = 8.0e-37, Sum P(2) = 8.0e-37
Identities = 51/87 (58%), Positives = 65/87 (74%)
Query: 1150 VEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDA 1209
VE + + N+S P + P + +YK+VP++YKG+ SY+EKV++SSN+EDA
Sbjct: 133 VENKQVLVNKS--MPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAEDA 190
Query: 1210 FLIKMLLRQTRRPEIGDKFSSRHGQKG 1236
FLIKMLLRQTRRPEIGDKFSSRHGQKG
Sbjct: 191 FLIKMLLRQTRRPEIGDKFSSRHGQKG 217
Score = 186 (70.5 bits), Expect = 8.0e-37, Sum P(2) = 8.0e-37
Identities = 35/49 (71%), Positives = 41/49 (83%)
Query: 775 MGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
MGKQAMG IGYNQ+NRIDTLMY L Y Q+PMV++KTI + F KLPAG+
Sbjct: 1 MGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQ 49
>ASPGD|ASPL0000039770 [details] [associations]
symbol:AN9120 species:162425 "Emericella nidulans"
[GO:0031048 "chromatin silencing by small RNA" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0000775 "chromosome, centromeric region" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 EMBL:BN001306 GO:GO:0006351
GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
OMA:IMIVFRA HOGENOM:HOG000222962 EnsemblFungi:CADANIAT00009490
Uniprot:C8VK81
Length = 1252
Score = 529 (191.3 bits), Expect = 1.8e-74, Sum P(3) = 1.8e-74
Identities = 107/266 (40%), Positives = 162/266 (60%)
Query: 914 LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
++P+P HNQ+PRNTYQ AMGKQAMG N R++T+ L Y Q+P+ ++++ F
Sbjct: 781 IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSMEFLRF 840
Query: 974 HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
+LPAGQNA +A+ YSGY+ ED++IMN++S+DRG R L YR K +R
Sbjct: 841 RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYSDSEKMVGLTVVERF 900
Query: 1034 LGPLLEADT---RKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAISMATPE 1089
P+ +DT RK Y LD+DGIV PG ++ +++ K+ P + T
Sbjct: 901 EKPM-RSDTIGMRKGTYDK--LDEDGIVNPGVRVSGEDIIIGKTAPLAPDAEELGQRTKN 957
Query: 1090 YKEVPVS--YKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIG 1147
+ ++ VS + + +++VLV++ + +K+ +R T+ P+IGDKF+SRHGQKG IG
Sbjct: 958 HTKLDVSTPLRSTENGIVDQVLVTTTPDSLRSVKVRMRMTKVPQIGDKFASRHGQKGTIG 1017
Query: 1148 LIVEQEDMPFNESGICPDIIMNPHGL 1173
+ QEDMPF G+ PD+I+NPH +
Sbjct: 1018 ITYRQEDMPFTREGVTPDLIINPHAI 1043
Score = 444 (161.4 bits), Expect = 1.4e-80, Sum P(4) = 1.4e-80
Identities = 91/232 (39%), Positives = 135/232 (58%)
Query: 1142 QKGVI--GLIVEQEDMPFNESG-ICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLE 1198
+ G++ G+ V ED+ ++ + PD K ++ +V + + ++
Sbjct: 921 EDGIVNPGVRVSGEDIIIGKTAPLAPDAEELGQRTKNHTKL----DVSTPLRSTENGIVD 976
Query: 1199 KVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDI 1258
+VLV++ + +K+ +R T+ P+IGDKF+SRHGQKG IG+ QEDMPF G+ PD+
Sbjct: 977 QVLVTTTPDSLRSVKVRMRMTKVPQIGDKFASRHGQKGTIGITYRQEDMPFTREGVTPDL 1036
Query: 1259 IMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKD 1318
I+NPH PSRMT+ LIE K + G + T F + + L HGY +G +
Sbjct: 1037 IINPHAIPSRMTIAHLIECQLSKVSALRGFEGDATPFTDVTVDSISRLLREHGYQSRGFE 1096
Query: 1319 IFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPT-GR 1369
+ Y+G TG L A ++ GP YYQ+L+HMV DKIHAR+RGP +LTRQP GR
Sbjct: 1097 VMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGR 1148
Score = 281 (104.0 bits), Expect = 1.4e-80, Sum P(4) = 1.4e-80
Identities = 64/177 (36%), Positives = 97/177 (54%)
Query: 192 MRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRK 250
++ T+T L A+ TGNW ++ + GV+QVLSR +Y S L + R N+ + K
Sbjct: 466 LKASTVTQGLRYALATGNWGEQKKAASAKAGVSQVLSRYTYASTLSHLRRTNTPIGRDGK 525
Query: 251 VSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIA 310
++ PR L + WG++CP++TPEG+ACGLVKNLALM +IT + ++ M +E +
Sbjct: 526 IAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLE 585
Query: 311 MFNGEELSSPGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHECRL-RDL 366
F E +P VFVNG+ G+ H + E ++ R HE L RD+
Sbjct: 586 EF--EPQVTPNATKVFVNGVWVGV--HRQPSHLVETMQALR-RRNMISHEVSLIRDI 637
Score = 196 (74.1 bits), Expect = 1.4e-80, Sum P(4) = 1.4e-80
Identities = 42/97 (43%), Positives = 57/97 (58%)
Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
TH EI P +LGVCA I +P+P HNQ+PRNTYQ AMGKQAMG N
Sbjct: 765 THCEIHPSMILGVCASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 810
Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
R++T+ L Y Q+P+ ++++ F +LPAG+
Sbjct: 811 FDQRMETMANILYYPQKPLATTRSMEFLRFRELPAGQ 847
Score = 123 (48.4 bits), Expect = 2.7e-68, Sum P(6) = 2.7e-68
Identities = 29/79 (36%), Positives = 45/79 (56%)
Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMV-LALSDPDMLDDRDYYGNKRLELAG 514
AR+ + + HI KA +L M+ R++ AL D+ DDRD++G KRL+LAG
Sbjct: 370 AREIMQKELLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDV-DDRDHFGKKRLDLAG 428
Query: 515 SLLSLMFEDVFKRFNSELK 533
LL+ +F +F R +L+
Sbjct: 429 PLLANLFRVLFTRVTRDLQ 447
Score = 86 (35.3 bits), Expect = 1.4e-80, Sum P(4) = 1.4e-80
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSD 157
D W ++ SF KGLV +DSFD FI+ +++L++ + D
Sbjct: 24 DCWTVISSFFDTKGLVSQQLDSFDEFISSTLQELVEEQGQVTLD 67
Score = 67 (28.6 bits), Expect = 2.7e-68, Sum P(6) = 2.7e-68
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 358 PHECRLRDLTYSAPITVDIE--YTRGSQRVV 386
PHE RLR++TY++P+ + I+ G +R+V
Sbjct: 111 PHEARLRNMTYASPLYLGIKKKIMEGRERMV 141
Score = 61 (26.5 bits), Expect = 2.7e-68, Sum P(6) = 2.7e-68
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 392 IGRMPIMLQSSKCVLRNKTE 411
IG+MPIML+S C+LR+ E
Sbjct: 180 IGKMPIMLKSKYCLLRDLGE 199
Score = 38 (18.4 bits), Expect = 2.2e-63, Sum P(5) = 2.2e-63
Identities = 7/27 (25%), Positives = 17/27 (62%)
Query: 275 ACGLVKNLALMTHITTENDEKNMLKIM 301
A G+V + ++ HI + ++ ML+++
Sbjct: 305 ALGVVSDEDILNHICYDRNDTPMLEML 331
>SGD|S000005677 [details] [associations]
symbol:RPB2 "RNA polymerase II second largest subunit B150"
species:4932 "Saccharomyces cerevisiae" [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA;IDA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003968 "RNA-directed
RNA polymerase activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IDA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 SGD:S000005677 PANTHER:PTHR20856 GO:GO:0005739
EMBL:BK006948 GO:GO:0046872 GO:GO:0003677 GO:GO:0006366
GO:GO:0003899 EMBL:U55020 RefSeq:NP_014796.3 GeneID:854324
KEGG:sce:YOR153W KO:K08711 GO:GO:0005665 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150 PDB:1I3Q
PDB:1I50 PDB:1I6H PDB:1K83 PDB:1NIK PDB:1NT9 PDB:1PQV PDB:1R5U
PDB:1R9S PDB:1R9T PDB:1SFO PDB:1TWA PDB:1TWC PDB:1TWF PDB:1TWG
PDB:1TWH PDB:1WCM PDB:1Y1V PDB:1Y1W PDB:1Y1Y PDB:1Y77 PDB:2B63
PDB:2B8K PDB:2E2H PDB:2E2I PDB:2E2J PDB:2JA5 PDB:2JA6 PDB:2JA7
PDB:2JA8 PDB:2NVQ PDB:2NVT PDB:2NVX PDB:2NVY PDB:2NVZ PDB:2R7Z
PDB:2R92 PDB:2R93 PDB:2VUM PDB:2YU9 PDB:3CQZ PDB:3FKI PDB:3GTG
PDB:3GTJ PDB:3GTK PDB:3GTL PDB:3GTM PDB:3GTO PDB:3GTP PDB:3GTQ
PDB:3H3V PDB:3HOU PDB:3HOV PDB:3HOW PDB:3HOX PDB:3HOY PDB:3HOZ
PDB:3I4M PDB:3I4N PDB:3K1F PDB:3K7A PDB:3M3Y PDB:3M4O PDB:3PO2
PDB:3PO3 PDB:3QT1 PDB:3RZD PDB:3RZO PDB:3S14 PDB:3S15 PDB:3S16
PDB:3S17 PDB:3S1M PDB:3S1N PDB:3S1Q PDB:3S1R PDB:3S2D PDB:3S2H
PDB:4A3B PDB:4A3C PDB:4A3D PDB:4A3E PDB:4A3F PDB:4A3G PDB:4A3I
PDB:4A3J PDB:4A3K PDB:4A3L PDB:4A3M PDB:4A93 PDB:4BBR PDB:4BBS
PDBsum:1I3Q PDBsum:1I50 PDBsum:1I6H PDBsum:1K83 PDBsum:1NIK
PDBsum:1NT9 PDBsum:1PQV PDBsum:1R5U PDBsum:1R9S PDBsum:1R9T
PDBsum:1SFO PDBsum:1TWA PDBsum:1TWC PDBsum:1TWF PDBsum:1TWG
PDBsum:1TWH PDBsum:1WCM PDBsum:1Y1V PDBsum:1Y1W PDBsum:1Y1Y
PDBsum:1Y77 PDBsum:2B63 PDBsum:2B8K PDBsum:2E2H PDBsum:2E2I
PDBsum:2E2J PDBsum:2JA5 PDBsum:2JA6 PDBsum:2JA7 PDBsum:2JA8
PDBsum:2NVQ PDBsum:2NVT PDBsum:2NVX PDBsum:2NVY PDBsum:2NVZ
PDBsum:2R7Z PDBsum:2R92 PDBsum:2R93 PDBsum:2VUM PDBsum:2YU9
PDBsum:3CQZ PDBsum:3FKI PDBsum:3GTG PDBsum:3GTJ PDBsum:3GTK
PDBsum:3GTL PDBsum:3GTM PDBsum:3GTO PDBsum:3GTP PDBsum:3GTQ
PDBsum:3H3V PDBsum:3HOU PDBsum:3HOV PDBsum:3HOW PDBsum:3HOX
PDBsum:3HOY PDBsum:3HOZ PDBsum:3I4M PDBsum:3I4N PDBsum:3K1F
PDBsum:3K7A PDBsum:3M3Y PDBsum:3M4O PDBsum:3PO2 PDBsum:3PO3
PDBsum:3QT1 PDBsum:3RZD PDBsum:3RZO PDBsum:3S14 PDBsum:3S15
PDBsum:3S16 PDBsum:3S17 PDBsum:3S1M PDBsum:3S1N PDBsum:3S1Q
PDBsum:3S1R PDBsum:3S2D PDBsum:3S2H PDBsum:4A3B PDBsum:4A3C
PDBsum:4A3D PDBsum:4A3E PDBsum:4A3F PDBsum:4A3G PDBsum:4A3I
PDBsum:4A3J PDBsum:4A3K PDBsum:4A3L PDBsum:4A3M PDBsum:4A93
PDBsum:4BBR PDBsum:4BBS KO:K03010 OMA:IMIVFRA
GeneTree:ENSGT00690000102234 HOGENOM:HOG000222962 OrthoDB:EOG45HW5D
EMBL:M15693 EMBL:Z75059 EMBL:AF527884 PIR:A25884 RefSeq:NP_014794.3
ProteinModelPortal:P08518 DIP:DIP-14N IntAct:P08518
MINT:MINT-654304 STRING:P08518 PaxDb:P08518 PeptideAtlas:P08518
PRIDE:P08518 EnsemblFungi:YOR151C GeneID:854322 KEGG:sce:YOR151C
CYGD:YOR151c EvolutionaryTrace:P08518 NextBio:976360
ArrayExpress:P08518 Genevestigator:P08518 GermOnline:YOR151C
Uniprot:P08518
Length = 1224
Score = 516 (186.7 bits), Expect = 7.6e-72, Sum P(3) = 7.6e-72
Identities = 102/263 (38%), Positives = 158/263 (60%)
Query: 914 LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
++P+P HNQ+PRNTYQ AMGKQAMG N R+DT+ L Y Q+P+ ++ + F
Sbjct: 755 IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMDTMANILYYPQKPLGTTRAMEYLKF 814
Query: 974 HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
+LPAGQNA +A+ YSGY+ ED++IMN++S+DRG R L +R+ K+Y +
Sbjct: 815 RELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETF 874
Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMP-TISVSAISMATPEY-- 1090
P R + LD DG++APG ++ V++ K+ P + + T +
Sbjct: 875 EKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGEDVIIGKTTPISPDEEELGQRTAYHSK 934
Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
++ + + +++VLV++N + +K+ +R T+ P+IGDKF+SRHGQKG IG+
Sbjct: 935 RDASTPLRSTENGIVDQVLVTTNQDGLKFVKVRVRTTKIPQIGDKFASRHGQKGTIGITY 994
Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
+EDMPF GI PD+I+NPH +
Sbjct: 995 RREDMPFTAEGIVPDLIINPHAI 1017
Score = 459 (166.6 bits), Expect = 1.5e-80, Sum P(4) = 1.5e-80
Identities = 87/174 (50%), Positives = 118/174 (67%)
Query: 1197 LEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICP 1256
+++VLV++N + +K+ +R T+ P+IGDKF+SRHGQKG IG+ +EDMPF GI P
Sbjct: 949 VDQVLVTTNQDGLKFVKVRVRTTKIPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVP 1008
Query: 1257 DIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQG 1316
D+I+NPH PSRMTV LIE L K + GN + + F + + + L HGY +G
Sbjct: 1009 DLIINPHAIPSRMTVAHLIECLLSKVAALSGNEGDASPFTDITVEGISKLLREHGYQSRG 1068
Query: 1317 KDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPT-GR 1369
++ Y+G TG+ L A I+ GP YYQ+L+HMV DKIHAR+RGP VLTRQP GR
Sbjct: 1069 FEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGR 1122
Score = 274 (101.5 bits), Expect = 1.5e-80, Sum P(4) = 1.5e-80
Identities = 69/219 (31%), Positives = 107/219 (48%)
Query: 196 TITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVSGP 254
TIT+ L A+ TGNW ++ M R GV+QVL+R +Y S L + R N+ + K++ P
Sbjct: 452 TITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKP 511
Query: 255 RSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMFNG 314
R L + WG++CP++TPEG+ACGLVKNL+LM+ I+ D ++ + G+E + +
Sbjct: 512 RQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPMPIITFLSEWGMEPLEDYVP 571
Query: 315 EELSSPGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHECRLRDLTYSA-PIT 373
+ SP VFVNG+ G+ H E + P +RD+ I
Sbjct: 572 HQ--SPDATRVFVNGVWHGV--HRNPARLMETLRTLRRKGDINPEVSMIRDIREKELKIF 627
Query: 374 VDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKTEY 412
D +V D +G + ++ TEY
Sbjct: 628 TDAGRVYRPLFIVEDDESLGHKELKVRKGHIAKLMATEY 666
Score = 191 (72.3 bits), Expect = 1.5e-80, Sum P(4) = 1.5e-80
Identities = 46/141 (32%), Positives = 69/141 (48%)
Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTH---LEIAPFTLLGVCAGIELLQY 748
+ L EG +EY+D E IA+ + P L++ P + V +
Sbjct: 681 WSSLLNEGLVEYIDAEEEESILIAMQPEDLEPAEANEENDLDVDPAKRIRVSHHATTFTH 740
Query: 749 NKRFHS------PGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQ 802
+ S ++P+P HNQ+PRNTYQ AMGKQAMG N R+DT+ L Y Q
Sbjct: 741 CEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMDTMANILYYPQ 800
Query: 803 RPMVESKTIRITNFHKLPAGK 823
+P+ ++ + F +LPAG+
Sbjct: 801 KPLGTTRAMEYLKFRELPAGQ 821
Score = 145 (56.1 bits), Expect = 4.4e-73, Sum P(6) = 4.4e-73
Identities = 30/84 (35%), Positives = 48/84 (57%)
Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
K+ + A+D L + HI + KA +L MI R++L D DDRD++G K
Sbjct: 345 KEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKK 404
Query: 509 RLELAGSLLSLMFEDVFKRFNSEL 532
RL+LAG LL+ +F+ +FK+ ++
Sbjct: 405 RLDLAGPLLAQLFKTLFKKLTKDI 428
Score = 82 (33.9 bits), Expect = 4.4e-73, Sum P(6) = 4.4e-73
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIE 377
V KP + ES T P E RLR+LTYS+ + VD++
Sbjct: 97 VTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVK 133
Score = 81 (33.6 bits), Expect = 1.5e-80, Sum P(4) = 1.5e-80
Identities = 12/35 (34%), Positives = 24/35 (68%)
Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLM 148
D W ++ +F +EKGLV +DSF+ F++ ++ ++
Sbjct: 29 DSWAVISAFFREKGLVSQQLDSFNQFVDYTLQDII 63
Score = 62 (26.9 bits), Expect = 4.4e-73, Sum P(6) = 4.4e-73
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 392 IGRMPIMLQSSKCVLRNKTE 411
IGR+PIML+S C L TE
Sbjct: 167 IGRLPIMLRSKNCYLSEATE 186
Score = 38 (18.4 bits), Expect = 6.5e-21, Sum P(3) = 6.5e-21
Identities = 13/54 (24%), Positives = 25/54 (46%)
Query: 530 SELKETNLSGVVNLVSGWWFELKYGNKIYIRSPSRKLLAAGFSGP-HSGRVRLM 582
S + + G+ L+ ++ + +Y +KL+A F GP + R+R M
Sbjct: 1045 SPFTDITVEGISKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYYQRLRHM 1098
>UNIPROTKB|I3LGP4 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase" species:9823
"Sus scrofa" [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=IEA] [GO:0004672 "protein kinase
activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 GO:GO:0004672 GO:GO:0006366 GO:GO:0003899
GO:GO:0005665 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03010 OMA:IMIVFRA GeneTree:ENSGT00690000102234 CTD:5431
EMBL:FP476021 EMBL:CU984592 RefSeq:XP_003129085.2 UniGene:Ssc.55326
Ensembl:ENSSSCT00000023257 GeneID:397001 KEGG:ssc:397001
Uniprot:I3LGP4
Length = 1167
Score = 499 (180.7 bits), Expect = 6.6e-68, Sum P(3) = 6.6e-68
Identities = 108/269 (40%), Positives = 165/269 (61%)
Query: 914 LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
++P+P HNQ+PRNTYQ AMGKQAMG N R+DTL + L Y Q+P+V ++++ F
Sbjct: 703 IIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRF 762
Query: 974 HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
+LPAG N+ +A+ SY+GY+ ED++IMN++++DRGF R + YR+ K +Q + D+
Sbjct: 763 RELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYK---EQESKKGFDQ- 818
Query: 1034 LGPLLEADTRKPVY--RHRA---LDQDGIVAPGEQICERQVLVNKSMPTI--SVSAISMA 1086
+ E TR+ RH LD DG++APG ++ V++ K++ T+ + +
Sbjct: 819 -EEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTV-TLPENEDELEGT 876
Query: 1087 TPEY--KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKG 1144
Y ++ + S +++V+V+ N E K+ +R R P+IGDKF+SRHGQKG
Sbjct: 877 NRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKG 936
Query: 1145 VIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
G+ QEDMPF GI PDII+NPH +
Sbjct: 937 TCGIQYRQEDMPFTCEGITPDIIINPHAI 965
Score = 450 (163.5 bits), Expect = 1.9e-80, Sum P(4) = 1.9e-80
Identities = 94/225 (41%), Positives = 133/225 (59%)
Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNS 1206
G+ V +D+ ++ P+ N L+G +R ++ + S +++V+V+ N
Sbjct: 850 GVRVSGDDVIIGKTVTLPE---NEDELEGTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQ 906
Query: 1207 EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYP 1266
E K+ +R R P+IGDKF+SRHGQKG G+ QEDMPF GI PDII+NPH P
Sbjct: 907 EGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIP 966
Query: 1267 SRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIR-HGYNYQGKDIFYSGIT 1325
SRMT+G LIE L GK +G + T F V L+ +GY+ +G ++ Y+G T
Sbjct: 967 SRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFT 1026
Query: 1326 GEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPT-GR 1369
G + + I+ GP YYQ+LKHMV DKIH+R+RGP +L RQP GR
Sbjct: 1027 GRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGR 1071
Score = 249 (92.7 bits), Expect = 1.9e-80, Sum P(4) = 1.9e-80
Identities = 59/159 (37%), Positives = 93/159 (58%)
Query: 186 FDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQ 244
F++ ++ I++ L ++ TGNW ++ R GV+QVL+RL++ S L + R+NS
Sbjct: 422 FNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSP 481
Query: 245 FEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNI 304
+ K++ PR L + WGM+CP++TPEG A GLVKNLALM +I+ + +L+ +
Sbjct: 482 IGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFL--- 538
Query: 305 GIEHIAMFNGEELSSPGVY---LVFVNGILAGITCHHKE 340
E +M N EE+S + +FVNG GI HK+
Sbjct: 539 --EEWSMENLEEISPAAIADATKIFVNGCWVGI---HKD 572
Score = 219 (82.2 bits), Expect = 1.9e-80, Sum P(4) = 1.9e-80
Identities = 52/137 (37%), Positives = 74/137 (54%)
Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRP------GVTTHLEIAPFTLLGVCAGIEL 745
+ D + G +EY+D E +A++ ++ TH EI P +LGVCA I
Sbjct: 646 WQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASI-- 703
Query: 746 LQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPM 805
+P+P HNQ+PRNTYQ AMGKQAMG N R+DTL + L Y Q+P+
Sbjct: 704 ------------IPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPL 751
Query: 806 VESKTIRITNFHKLPAG 822
V ++++ F +LPAG
Sbjct: 752 VTTRSMEYLRFRELPAG 768
Score = 160 (61.4 bits), Expect = 3.3e-78, Sum P(5) = 3.3e-78
Identities = 44/123 (35%), Positives = 63/123 (51%)
Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
K+ + A++ L + H+ V + KA +L M+ R++LA LDDRD+YGNK
Sbjct: 325 KEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNK 384
Query: 509 RLELAGSLLSLMFEDVFKRFNSELKETNLSGVVNLVSGWWFELKYGNKIYIRSPSRKL-L 567
RL+LAG LL+ +F +FK LKE + + G F L+ K I S K L
Sbjct: 385 RLDLAGPLLAFLFRGMFKNL---LKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSL 441
Query: 568 AAG 570
A G
Sbjct: 442 ATG 444
Score = 112 (44.5 bits), Expect = 3.3e-78, Sum P(5) = 3.3e-78
Identities = 26/59 (44%), Positives = 38/59 (64%)
Query: 358 PHECRLRDLTYSAPITVDIEYT---RGSQRVV--RSDLVIGRMPIMLQSSKCVLRNKTE 411
P+E RLR+LTYSAP+ VDI T G +++ IG++PIML+S+ C+L T+
Sbjct: 103 PNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTD 161
Score = 85 (35.0 bits), Expect = 1.9e-80, Sum P(4) = 1.9e-80
Identities = 13/34 (38%), Positives = 25/34 (73%)
Query: 116 WKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQ 149
W ++ S+ EKGLV+ +DSFD FI + ++++++
Sbjct: 20 WIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE 53
Score = 50 (22.7 bits), Expect = 5.6e-20, Sum P(3) = 5.6e-20
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 536 NLSGVVNLVSGWWFELKYGNKI-YIRSPSRKLLAAGFSGP 574
N+ + NL+S + + L+ GN++ Y RK+ + F GP
Sbjct: 1000 NVQKISNLLSDYGYHLR-GNEVLYNGFTGRKITSQIFIGP 1038
Score = 40 (19.1 bits), Expect = 7.1e-36, Sum P(3) = 7.1e-36
Identities = 16/66 (24%), Positives = 26/66 (39%)
Query: 832 EELTARESCHEVLKIISFSISVAVFDSVWLGDVKQGVHQLSE-EKEPRLLRKFQYFDVRT 890
E+ R+ + I S+ V D+ + + H E E+ PR L KF+ +
Sbjct: 29 EKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEEPPRYLLKFEQIYLSK 88
Query: 891 PYRLRR 896
P R
Sbjct: 89 PTHWER 94
Score = 39 (18.8 bits), Expect = 1.1e-61, Sum P(4) = 1.1e-61
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 1032 RILGPLLEADTRKPVYRHRALDQ 1054
RI PLL + +K + + R +DQ
Sbjct: 613 RICRPLLIVEKQKLLLKKRHIDQ 635
Score = 38 (18.4 bits), Expect = 1.5e-75, Sum P(4) = 1.5e-75
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 39 GLQAILFLPLFKQ-----VDFGDSKVVSLRELLSHVTY 71
G + + LP KQ + F VS R++L H+ Y
Sbjct: 246 GQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIY 283
Score = 38 (18.4 bits), Expect = 1.6e-70, Sum P(5) = 1.6e-70
Identities = 13/56 (23%), Positives = 29/56 (51%)
Query: 275 ACGLVKNLALMTHITTENDEKNMLKIM-------YNIGIEHIAM-FNGEELSSPGV 322
A G V + ++ HI + ++ M++++ + I +++A+ F G + PGV
Sbjct: 268 ALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGV 323
>UNIPROTKB|A5PJW8 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase" species:9913
"Bos taurus" [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=IEA] [GO:0004672 "protein kinase
activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 GO:GO:0004672 GO:GO:0006366 GO:GO:0003899
GO:GO:0005665 eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03010 OMA:IMIVFRA
GeneTree:ENSGT00690000102234 HOGENOM:HOG000222962 CTD:5431
HOVERGEN:HBG017744 OrthoDB:EOG4JQ3WQ EMBL:DAAA02017743
EMBL:BC142267 IPI:IPI00701366 RefSeq:NP_001092552.1
UniGene:Bt.103151 STRING:A5PJW8 Ensembl:ENSBTAT00000025800
GeneID:538184 KEGG:bta:538184 InParanoid:A5PJW8 NextBio:20877300
Uniprot:A5PJW8
Length = 1174
Score = 499 (180.7 bits), Expect = 6.9e-68, Sum P(3) = 6.9e-68
Identities = 108/269 (40%), Positives = 165/269 (61%)
Query: 914 LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
++P+P HNQ+PRNTYQ AMGKQAMG N R+DTL + L Y Q+P+V ++++ F
Sbjct: 710 IIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRF 769
Query: 974 HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
+LPAG N+ +A+ SY+GY+ ED++IMN++++DRGF R + YR+ K +Q + D+
Sbjct: 770 RELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYK---EQESKKGFDQ- 825
Query: 1034 LGPLLEADTRKPVY--RHRA---LDQDGIVAPGEQICERQVLVNKSMPTI--SVSAISMA 1086
+ E TR+ RH LD DG++APG ++ V++ K++ T+ + +
Sbjct: 826 -EEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTV-TLPENEDELEGT 883
Query: 1087 TPEY--KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKG 1144
Y ++ + S +++V+V+ N E K+ +R R P+IGDKF+SRHGQKG
Sbjct: 884 NRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKG 943
Query: 1145 VIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
G+ QEDMPF GI PDII+NPH +
Sbjct: 944 TCGIQYRQEDMPFTCEGITPDIIINPHAI 972
Score = 450 (163.5 bits), Expect = 2.0e-80, Sum P(4) = 2.0e-80
Identities = 94/225 (41%), Positives = 133/225 (59%)
Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNS 1206
G+ V +D+ ++ P+ N L+G +R ++ + S +++V+V+ N
Sbjct: 857 GVRVSGDDVIIGKTVTLPE---NEDELEGTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQ 913
Query: 1207 EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYP 1266
E K+ +R R P+IGDKF+SRHGQKG G+ QEDMPF GI PDII+NPH P
Sbjct: 914 EGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIP 973
Query: 1267 SRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIR-HGYNYQGKDIFYSGIT 1325
SRMT+G LIE L GK +G + T F V L+ +GY+ +G ++ Y+G T
Sbjct: 974 SRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFT 1033
Query: 1326 GEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPT-GR 1369
G + + I+ GP YYQ+LKHMV DKIH+R+RGP +L RQP GR
Sbjct: 1034 GRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGR 1078
Score = 249 (92.7 bits), Expect = 2.0e-80, Sum P(4) = 2.0e-80
Identities = 59/159 (37%), Positives = 93/159 (58%)
Query: 186 FDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQ 244
F++ ++ I++ L ++ TGNW ++ R GV+QVL+RL++ S L + R+NS
Sbjct: 429 FNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSP 488
Query: 245 FEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNI 304
+ K++ PR L + WGM+CP++TPEG A GLVKNLALM +I+ + +L+ +
Sbjct: 489 IGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFL--- 545
Query: 305 GIEHIAMFNGEELSSPGVY---LVFVNGILAGITCHHKE 340
E +M N EE+S + +FVNG GI HK+
Sbjct: 546 --EEWSMENLEEISPAAIADATKIFVNGCWVGI---HKD 579
Score = 219 (82.2 bits), Expect = 2.0e-80, Sum P(4) = 2.0e-80
Identities = 52/137 (37%), Positives = 74/137 (54%)
Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRP------GVTTHLEIAPFTLLGVCAGIEL 745
+ D + G +EY+D E +A++ ++ TH EI P +LGVCA I
Sbjct: 653 WQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASI-- 710
Query: 746 LQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPM 805
+P+P HNQ+PRNTYQ AMGKQAMG N R+DTL + L Y Q+P+
Sbjct: 711 ------------IPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPL 758
Query: 806 VESKTIRITNFHKLPAG 822
V ++++ F +LPAG
Sbjct: 759 VTTRSMEYLRFRELPAG 775
Score = 160 (61.4 bits), Expect = 3.5e-78, Sum P(5) = 3.5e-78
Identities = 44/123 (35%), Positives = 63/123 (51%)
Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
K+ + A++ L + H+ V + KA +L M+ R++LA LDDRD+YGNK
Sbjct: 332 KEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNK 391
Query: 509 RLELAGSLLSLMFEDVFKRFNSELKETNLSGVVNLVSGWWFELKYGNKIYIRSPSRKL-L 567
RL+LAG LL+ +F +FK LKE + + G F L+ K I S K L
Sbjct: 392 RLDLAGPLLAFLFRGMFKNL---LKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSL 448
Query: 568 AAG 570
A G
Sbjct: 449 ATG 451
Score = 112 (44.5 bits), Expect = 3.5e-78, Sum P(5) = 3.5e-78
Identities = 26/59 (44%), Positives = 38/59 (64%)
Query: 358 PHECRLRDLTYSAPITVDIEYT---RGSQRVV--RSDLVIGRMPIMLQSSKCVLRNKTE 411
P+E RLR+LTYSAP+ VDI T G +++ IG++PIML+S+ C+L T+
Sbjct: 110 PNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTD 168
Score = 85 (35.0 bits), Expect = 2.0e-80, Sum P(4) = 2.0e-80
Identities = 13/34 (38%), Positives = 25/34 (73%)
Query: 116 WKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQ 149
W ++ S+ EKGLV+ +DSFD FI + ++++++
Sbjct: 27 WIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE 60
Score = 50 (22.7 bits), Expect = 5.7e-20, Sum P(3) = 5.7e-20
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 536 NLSGVVNLVSGWWFELKYGNKI-YIRSPSRKLLAAGFSGP 574
N+ + NL+S + + L+ GN++ Y RK+ + F GP
Sbjct: 1007 NVQKISNLLSDYGYHLR-GNEVLYNGFTGRKITSQIFIGP 1045
Score = 40 (19.1 bits), Expect = 7.4e-36, Sum P(3) = 7.4e-36
Identities = 16/66 (24%), Positives = 26/66 (39%)
Query: 832 EELTARESCHEVLKIISFSISVAVFDSVWLGDVKQGVHQLSE-EKEPRLLRKFQYFDVRT 890
E+ R+ + I S+ V D+ + + H E E+ PR L KF+ +
Sbjct: 36 EKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEEPPRYLLKFEQIYLSK 95
Query: 891 PYRLRR 896
P R
Sbjct: 96 PTHWER 101
Score = 39 (18.8 bits), Expect = 1.2e-61, Sum P(4) = 1.2e-61
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 1032 RILGPLLEADTRKPVYRHRALDQ 1054
RI PLL + +K + + R +DQ
Sbjct: 620 RICRPLLIVEKQKLLLKKRHIDQ 642
Score = 38 (18.4 bits), Expect = 1.6e-75, Sum P(4) = 1.6e-75
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 39 GLQAILFLPLFKQ-----VDFGDSKVVSLRELLSHVTY 71
G + + LP KQ + F VS R++L H+ Y
Sbjct: 253 GQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIY 290
Score = 38 (18.4 bits), Expect = 1.7e-70, Sum P(5) = 1.7e-70
Identities = 13/56 (23%), Positives = 29/56 (51%)
Query: 275 ACGLVKNLALMTHITTENDEKNMLKIM-------YNIGIEHIAM-FNGEELSSPGV 322
A G V + ++ HI + ++ M++++ + I +++A+ F G + PGV
Sbjct: 275 ALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGV 330
>UNIPROTKB|E2RNN5 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=IEA] [GO:0004672 "protein
kinase activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 GO:GO:0004672 GO:GO:0006366 GO:GO:0003899
GO:GO:0005665 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03010 OMA:IMIVFRA GeneTree:ENSGT00690000102234 CTD:5431
EMBL:AAEX03009093 RefSeq:XP_532382.2 ProteinModelPortal:E2RNN5
Ensembl:ENSCAFT00000003641 GeneID:475152 KEGG:cfa:475152
Uniprot:E2RNN5
Length = 1174
Score = 499 (180.7 bits), Expect = 6.9e-68, Sum P(3) = 6.9e-68
Identities = 108/269 (40%), Positives = 165/269 (61%)
Query: 914 LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
++P+P HNQ+PRNTYQ AMGKQAMG N R+DTL + L Y Q+P+V ++++ F
Sbjct: 710 IIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRF 769
Query: 974 HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
+LPAG N+ +A+ SY+GY+ ED++IMN++++DRGF R + YR+ K +Q + D+
Sbjct: 770 RELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYK---EQESKKGFDQ- 825
Query: 1034 LGPLLEADTRKPVY--RHRA---LDQDGIVAPGEQICERQVLVNKSMPTI--SVSAISMA 1086
+ E TR+ RH LD DG++APG ++ V++ K++ T+ + +
Sbjct: 826 -EEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTV-TLPENEDELEGT 883
Query: 1087 TPEY--KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKG 1144
Y ++ + S +++V+V+ N E K+ +R R P+IGDKF+SRHGQKG
Sbjct: 884 NRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKG 943
Query: 1145 VIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
G+ QEDMPF GI PDII+NPH +
Sbjct: 944 TCGIQYRQEDMPFTCEGITPDIIINPHAI 972
Score = 450 (163.5 bits), Expect = 2.0e-80, Sum P(4) = 2.0e-80
Identities = 94/225 (41%), Positives = 133/225 (59%)
Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNS 1206
G+ V +D+ ++ P+ N L+G +R ++ + S +++V+V+ N
Sbjct: 857 GVRVSGDDVIIGKTVTLPE---NEDELEGTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQ 913
Query: 1207 EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYP 1266
E K+ +R R P+IGDKF+SRHGQKG G+ QEDMPF GI PDII+NPH P
Sbjct: 914 EGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIP 973
Query: 1267 SRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIR-HGYNYQGKDIFYSGIT 1325
SRMT+G LIE L GK +G + T F V L+ +GY+ +G ++ Y+G T
Sbjct: 974 SRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFT 1033
Query: 1326 GEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPT-GR 1369
G + + I+ GP YYQ+LKHMV DKIH+R+RGP +L RQP GR
Sbjct: 1034 GRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGR 1078
Score = 249 (92.7 bits), Expect = 2.0e-80, Sum P(4) = 2.0e-80
Identities = 59/159 (37%), Positives = 93/159 (58%)
Query: 186 FDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQ 244
F++ ++ I++ L ++ TGNW ++ R GV+QVL+RL++ S L + R+NS
Sbjct: 429 FNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSP 488
Query: 245 FEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNI 304
+ K++ PR L + WGM+CP++TPEG A GLVKNLALM +I+ + +L+ +
Sbjct: 489 IGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFL--- 545
Query: 305 GIEHIAMFNGEELSSPGVY---LVFVNGILAGITCHHKE 340
E +M N EE+S + +FVNG GI HK+
Sbjct: 546 --EEWSMENLEEISPAAIADATKIFVNGCWVGI---HKD 579
Score = 219 (82.2 bits), Expect = 2.0e-80, Sum P(4) = 2.0e-80
Identities = 52/137 (37%), Positives = 74/137 (54%)
Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRP------GVTTHLEIAPFTLLGVCAGIEL 745
+ D + G +EY+D E +A++ ++ TH EI P +LGVCA I
Sbjct: 653 WQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASI-- 710
Query: 746 LQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPM 805
+P+P HNQ+PRNTYQ AMGKQAMG N R+DTL + L Y Q+P+
Sbjct: 711 ------------IPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPL 758
Query: 806 VESKTIRITNFHKLPAG 822
V ++++ F +LPAG
Sbjct: 759 VTTRSMEYLRFRELPAG 775
Score = 160 (61.4 bits), Expect = 3.5e-78, Sum P(5) = 3.5e-78
Identities = 44/123 (35%), Positives = 63/123 (51%)
Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
K+ + A++ L + H+ V + KA +L M+ R++LA LDDRD+YGNK
Sbjct: 332 KEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNK 391
Query: 509 RLELAGSLLSLMFEDVFKRFNSELKETNLSGVVNLVSGWWFELKYGNKIYIRSPSRKL-L 567
RL+LAG LL+ +F +FK LKE + + G F L+ K I S K L
Sbjct: 392 RLDLAGPLLAFLFRGMFKNL---LKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSL 448
Query: 568 AAG 570
A G
Sbjct: 449 ATG 451
Score = 112 (44.5 bits), Expect = 3.5e-78, Sum P(5) = 3.5e-78
Identities = 26/59 (44%), Positives = 38/59 (64%)
Query: 358 PHECRLRDLTYSAPITVDIEYT---RGSQRVV--RSDLVIGRMPIMLQSSKCVLRNKTE 411
P+E RLR+LTYSAP+ VDI T G +++ IG++PIML+S+ C+L T+
Sbjct: 110 PNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTD 168
Score = 85 (35.0 bits), Expect = 2.0e-80, Sum P(4) = 2.0e-80
Identities = 13/34 (38%), Positives = 25/34 (73%)
Query: 116 WKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQ 149
W ++ S+ EKGLV+ +DSFD FI + ++++++
Sbjct: 27 WIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE 60
Score = 50 (22.7 bits), Expect = 5.7e-20, Sum P(3) = 5.7e-20
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 536 NLSGVVNLVSGWWFELKYGNKI-YIRSPSRKLLAAGFSGP 574
N+ + NL+S + + L+ GN++ Y RK+ + F GP
Sbjct: 1007 NVQKISNLLSDYGYHLR-GNEVLYNGFTGRKITSQIFIGP 1045
Score = 40 (19.1 bits), Expect = 7.4e-36, Sum P(3) = 7.4e-36
Identities = 16/66 (24%), Positives = 26/66 (39%)
Query: 832 EELTARESCHEVLKIISFSISVAVFDSVWLGDVKQGVHQLSE-EKEPRLLRKFQYFDVRT 890
E+ R+ + I S+ V D+ + + H E E+ PR L KF+ +
Sbjct: 36 EKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEEPPRYLLKFEQIYLSK 95
Query: 891 PYRLRR 896
P R
Sbjct: 96 PTHWER 101
Score = 39 (18.8 bits), Expect = 1.2e-61, Sum P(4) = 1.2e-61
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 1032 RILGPLLEADTRKPVYRHRALDQ 1054
RI PLL + +K + + R +DQ
Sbjct: 620 RICRPLLIVEKQKLLLKKRHIDQ 642
Score = 38 (18.4 bits), Expect = 1.6e-75, Sum P(4) = 1.6e-75
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 39 GLQAILFLPLFKQ-----VDFGDSKVVSLRELLSHVTY 71
G + + LP KQ + F VS R++L H+ Y
Sbjct: 253 GQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIY 290
Score = 38 (18.4 bits), Expect = 1.7e-70, Sum P(5) = 1.7e-70
Identities = 13/56 (23%), Positives = 29/56 (51%)
Query: 275 ACGLVKNLALMTHITTENDEKNMLKIM-------YNIGIEHIAM-FNGEELSSPGV 322
A G V + ++ HI + ++ M++++ + I +++A+ F G + PGV
Sbjct: 275 ALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGV 330
>UNIPROTKB|F1NCB0 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 GeneTree:ENSGT00690000102234
EMBL:AADN02009110 EMBL:AADN02009111 IPI:IPI00823005
Ensembl:ENSGALT00000037965 ArrayExpress:F1NCB0 Uniprot:F1NCB0
Length = 1174
Score = 500 (181.1 bits), Expect = 5.4e-68, Sum P(3) = 5.4e-68
Identities = 107/269 (39%), Positives = 166/269 (61%)
Query: 914 LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
++P+P HNQ+PRNTYQ AMGKQAMG N R+DTL + L Y Q+P+V ++++ F
Sbjct: 710 IIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRF 769
Query: 974 HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
+LPAG N+ +A+ SY+GY+ ED++IMN++++DRGF R + YR+ K +Q + +D+
Sbjct: 770 RELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYK---EQESKKGYDQ- 825
Query: 1034 LGPLLEADTRKPVY--RHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATP 1088
+ E TR+ RH LD DG++APG ++ V++ K++ T+ + + +
Sbjct: 826 -EEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTV-TLPENEDELEST 883
Query: 1089 EYK----EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKG 1144
+ + + S +++V+V+ N E K+ +R R P+IGDKF+SRHGQKG
Sbjct: 884 NRRFTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKG 943
Query: 1145 VIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
G+ QEDMPF GI PDII+NPH +
Sbjct: 944 TCGIQYRQEDMPFTCEGITPDIIINPHAI 972
Score = 444 (161.4 bits), Expect = 2.8e-80, Sum P(4) = 2.8e-80
Identities = 93/225 (41%), Positives = 132/225 (58%)
Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNS 1206
G+ V +D+ ++ P+ N L+ +R ++ + S +++V+V+ N
Sbjct: 857 GVRVSGDDVIIGKTVTLPE---NEDELESTNRRFTKRDCSTFLRTSETGIVDQVMVTLNQ 913
Query: 1207 EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYP 1266
E K+ +R R P+IGDKF+SRHGQKG G+ QEDMPF GI PDII+NPH P
Sbjct: 914 EGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIP 973
Query: 1267 SRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIR-HGYNYQGKDIFYSGIT 1325
SRMT+G LIE L GK +G + T F V L+ +GY+ +G ++ Y+G T
Sbjct: 974 SRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFT 1033
Query: 1326 GEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPT-GR 1369
G + + I+ GP YYQ+LKHMV DKIH+R+RGP +L RQP GR
Sbjct: 1034 GRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGR 1078
Score = 249 (92.7 bits), Expect = 2.8e-80, Sum P(4) = 2.8e-80
Identities = 59/159 (37%), Positives = 93/159 (58%)
Query: 186 FDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQ 244
F++ ++ I++ L ++ TGNW ++ R GV+QVL+RL++ S L + R+NS
Sbjct: 429 FNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSP 488
Query: 245 FEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNI 304
+ K++ PR L + WGM+CP++TPEG A GLVKNLALM +I+ + +L+ +
Sbjct: 489 IGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFL--- 545
Query: 305 GIEHIAMFNGEELSSPGVY---LVFVNGILAGITCHHKE 340
E +M N EE+S + +FVNG GI HK+
Sbjct: 546 --EEWSMENLEEISPAAIADATKIFVNGCWVGI---HKD 579
Score = 224 (83.9 bits), Expect = 2.8e-80, Sum P(4) = 2.8e-80
Identities = 54/137 (39%), Positives = 76/137 (55%)
Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRP-GVT-----THLEIAPFTLLGVCAGIEL 745
+ D + G +EY+D E +A++ ++ GV TH EI P +LGVCA I
Sbjct: 653 WQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASI-- 710
Query: 746 LQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPM 805
+P+P HNQ+PRNTYQ AMGKQAMG N R+DTL + L Y Q+P+
Sbjct: 711 ------------IPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPL 758
Query: 806 VESKTIRITNFHKLPAG 822
V ++++ F +LPAG
Sbjct: 759 VTTRSMEYLRFRELPAG 775
Score = 160 (61.4 bits), Expect = 8.1e-78, Sum P(5) = 8.1e-78
Identities = 44/123 (35%), Positives = 63/123 (51%)
Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
K+ + A++ L + H+ V + KA +L M+ R++LA LDDRD+YGNK
Sbjct: 332 KEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNK 391
Query: 509 RLELAGSLLSLMFEDVFKRFNSELKETNLSGVVNLVSGWWFELKYGNKIYIRSPSRKL-L 567
RL+LAG LL+ +F +FK LKE + + G F L+ K I S K L
Sbjct: 392 RLDLAGPLLAFLFRGMFKNL---LKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSL 448
Query: 568 AAG 570
A G
Sbjct: 449 ATG 451
Score = 110 (43.8 bits), Expect = 8.1e-78, Sum P(5) = 8.1e-78
Identities = 26/59 (44%), Positives = 37/59 (62%)
Query: 358 PHECRLRDLTYSAPITVDIEYT---RGSQRVV--RSDLVIGRMPIMLQSSKCVLRNKTE 411
P+E RLR+LTYSAP+ VDI T G ++ IG++PIML+S+ C+L T+
Sbjct: 110 PNEARLRNLTYSAPLYVDITKTVIKEGEDQLQTQHQKTFIGKIPIMLRSTYCLLNGLTD 168
Score = 85 (35.0 bits), Expect = 2.8e-80, Sum P(4) = 2.8e-80
Identities = 13/34 (38%), Positives = 25/34 (73%)
Query: 116 WKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQ 149
W ++ S+ EKGLV+ +DSFD FI + ++++++
Sbjct: 27 WIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE 60
Score = 50 (22.7 bits), Expect = 5.7e-20, Sum P(3) = 5.7e-20
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 536 NLSGVVNLVSGWWFELKYGNKI-YIRSPSRKLLAAGFSGP 574
N+ + NL+S + + L+ GN++ Y RK+ + F GP
Sbjct: 1007 NVQKISNLLSDYGYHLR-GNEVLYNGFTGRKITSQIFIGP 1045
Score = 41 (19.5 bits), Expect = 2.6e-35, Sum P(3) = 2.6e-35
Identities = 16/66 (24%), Positives = 26/66 (39%)
Query: 832 EELTARESCHEVLKIISFSISVAVFDSVWLGDVKQGVHQLSE-EKEPRLLRKFQYFDVRT 890
E+ R+ + I S+ V D+ + + H E E+ PR L KF+ +
Sbjct: 36 EKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHATGEVEEPPRYLLKFEQIYLSK 95
Query: 891 PYRLRR 896
P R
Sbjct: 96 PTHWER 101
Score = 39 (18.8 bits), Expect = 5.4e-61, Sum P(4) = 5.4e-61
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 1032 RILGPLLEADTRKPVYRHRALDQ 1054
RI PLL + +K + + R +DQ
Sbjct: 620 RICRPLLIVEKQKLLLKKRHIDQ 642
Score = 38 (18.4 bits), Expect = 2.3e-75, Sum P(4) = 2.3e-75
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 39 GLQAILFLPLFKQ-----VDFGDSKVVSLRELLSHVTY 71
G + + LP KQ + F VS R++L H+ Y
Sbjct: 253 GQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIY 290
Score = 38 (18.4 bits), Expect = 2.4e-70, Sum P(5) = 2.4e-70
Identities = 13/56 (23%), Positives = 29/56 (51%)
Query: 275 ACGLVKNLALMTHITTENDEKNMLKIM-------YNIGIEHIAM-FNGEELSSPGV 322
A G V + ++ HI + ++ M++++ + I +++A+ F G + PGV
Sbjct: 275 ALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGV 330
>UNIPROTKB|F1P4F2 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0004672 "protein kinase activity"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 GO:GO:0004672 GO:GO:0006366 GO:GO:0003899
GO:GO:0005665 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
OMA:IMIVFRA GeneTree:ENSGT00690000102234 EMBL:AADN02009110
EMBL:AADN02009111 IPI:IPI00580164 Ensembl:ENSGALT00000018572
ArrayExpress:F1P4F2 Uniprot:F1P4F2
Length = 1176
Score = 500 (181.1 bits), Expect = 5.4e-68, Sum P(3) = 5.4e-68
Identities = 107/269 (39%), Positives = 166/269 (61%)
Query: 914 LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
++P+P HNQ+PRNTYQ AMGKQAMG N R+DTL + L Y Q+P+V ++++ F
Sbjct: 712 IIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRF 771
Query: 974 HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
+LPAG N+ +A+ SY+GY+ ED++IMN++++DRGF R + YR+ K +Q + +D+
Sbjct: 772 RELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYK---EQESKKGYDQ- 827
Query: 1034 LGPLLEADTRKPVY--RHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATP 1088
+ E TR+ RH LD DG++APG ++ V++ K++ T+ + + +
Sbjct: 828 -EEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTV-TLPENEDELEST 885
Query: 1089 EYK----EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKG 1144
+ + + S +++V+V+ N E K+ +R R P+IGDKF+SRHGQKG
Sbjct: 886 NRRFTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKG 945
Query: 1145 VIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
G+ QEDMPF GI PDII+NPH +
Sbjct: 946 TCGIQYRQEDMPFTCEGITPDIIINPHAI 974
Score = 444 (161.4 bits), Expect = 2.8e-80, Sum P(4) = 2.8e-80
Identities = 93/225 (41%), Positives = 132/225 (58%)
Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNS 1206
G+ V +D+ ++ P+ N L+ +R ++ + S +++V+V+ N
Sbjct: 859 GVRVSGDDVIIGKTVTLPE---NEDELESTNRRFTKRDCSTFLRTSETGIVDQVMVTLNQ 915
Query: 1207 EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYP 1266
E K+ +R R P+IGDKF+SRHGQKG G+ QEDMPF GI PDII+NPH P
Sbjct: 916 EGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIP 975
Query: 1267 SRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIR-HGYNYQGKDIFYSGIT 1325
SRMT+G LIE L GK +G + T F V L+ +GY+ +G ++ Y+G T
Sbjct: 976 SRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFT 1035
Query: 1326 GEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPT-GR 1369
G + + I+ GP YYQ+LKHMV DKIH+R+RGP +L RQP GR
Sbjct: 1036 GRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGR 1080
Score = 249 (92.7 bits), Expect = 2.8e-80, Sum P(4) = 2.8e-80
Identities = 59/159 (37%), Positives = 93/159 (58%)
Query: 186 FDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQ 244
F++ ++ I++ L ++ TGNW ++ R GV+QVL+RL++ S L + R+NS
Sbjct: 431 FNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSP 490
Query: 245 FEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNI 304
+ K++ PR L + WGM+CP++TPEG A GLVKNLALM +I+ + +L+ +
Sbjct: 491 IGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFL--- 547
Query: 305 GIEHIAMFNGEELSSPGVY---LVFVNGILAGITCHHKE 340
E +M N EE+S + +FVNG GI HK+
Sbjct: 548 --EEWSMENLEEISPAAIADATKIFVNGCWVGI---HKD 581
Score = 224 (83.9 bits), Expect = 2.8e-80, Sum P(4) = 2.8e-80
Identities = 54/137 (39%), Positives = 76/137 (55%)
Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRP-GVT-----THLEIAPFTLLGVCAGIEL 745
+ D + G +EY+D E +A++ ++ GV TH EI P +LGVCA I
Sbjct: 655 WQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASI-- 712
Query: 746 LQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPM 805
+P+P HNQ+PRNTYQ AMGKQAMG N R+DTL + L Y Q+P+
Sbjct: 713 ------------IPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPL 760
Query: 806 VESKTIRITNFHKLPAG 822
V ++++ F +LPAG
Sbjct: 761 VTTRSMEYLRFRELPAG 777
Score = 151 (58.2 bits), Expect = 7.1e-77, Sum P(5) = 7.1e-77
Identities = 44/124 (35%), Positives = 63/124 (50%)
Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAV-MIRRMVLALSDPDMLDDRDYYGN 507
K+ + A++ L + H+ V + KA +L M+ R++LA LDDRD+YGN
Sbjct: 333 KEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYYMVHRLLLAALGRRELDDRDHYGN 392
Query: 508 KRLELAGSLLSLMFEDVFKRFNSELKETNLSGVVNLVSGWWFELKYGNKIYIRSPSRKL- 566
KRL+LAG LL+ +F +FK LKE + + G F L+ K I S K
Sbjct: 393 KRLDLAGPLLAFLFRGMFKNL---LKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYS 449
Query: 567 LAAG 570
LA G
Sbjct: 450 LATG 453
Score = 110 (43.8 bits), Expect = 7.1e-77, Sum P(5) = 7.1e-77
Identities = 26/59 (44%), Positives = 37/59 (62%)
Query: 358 PHECRLRDLTYSAPITVDIEYT---RGSQRVV--RSDLVIGRMPIMLQSSKCVLRNKTE 411
P+E RLR+LTYSAP+ VDI T G ++ IG++PIML+S+ C+L T+
Sbjct: 111 PNEARLRNLTYSAPLYVDITKTVIKEGEDQLQTQHQKTFIGKIPIMLRSTYCLLNGLTD 169
Score = 85 (35.0 bits), Expect = 2.8e-80, Sum P(4) = 2.8e-80
Identities = 13/34 (38%), Positives = 25/34 (73%)
Query: 116 WKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQ 149
W ++ S+ EKGLV+ +DSFD FI + ++++++
Sbjct: 28 WIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE 61
Score = 50 (22.7 bits), Expect = 5.8e-20, Sum P(3) = 5.8e-20
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 536 NLSGVVNLVSGWWFELKYGNKI-YIRSPSRKLLAAGFSGP 574
N+ + NL+S + + L+ GN++ Y RK+ + F GP
Sbjct: 1009 NVQKISNLLSDYGYHLR-GNEVLYNGFTGRKITSQIFIGP 1047
Score = 41 (19.5 bits), Expect = 2.6e-35, Sum P(3) = 2.6e-35
Identities = 16/66 (24%), Positives = 26/66 (39%)
Query: 832 EELTARESCHEVLKIISFSISVAVFDSVWLGDVKQGVHQLSE-EKEPRLLRKFQYFDVRT 890
E+ R+ + I S+ V D+ + + H E E+ PR L KF+ +
Sbjct: 37 EKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHATGEVEEPPRYLLKFEQIYLSK 96
Query: 891 PYRLRR 896
P R
Sbjct: 97 PTHWER 102
Score = 39 (18.8 bits), Expect = 5.5e-61, Sum P(4) = 5.5e-61
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 1032 RILGPLLEADTRKPVYRHRALDQ 1054
RI PLL + +K + + R +DQ
Sbjct: 622 RICRPLLIVEKQKLLLKKRHIDQ 644
Score = 38 (18.4 bits), Expect = 2.3e-75, Sum P(4) = 2.3e-75
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 39 GLQAILFLPLFKQ-----VDFGDSKVVSLRELLSHVTY 71
G + + LP KQ + F VS R++L H+ Y
Sbjct: 254 GQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIY 291
Score = 38 (18.4 bits), Expect = 2.2e-69, Sum P(5) = 2.2e-69
Identities = 13/56 (23%), Positives = 29/56 (51%)
Query: 275 ACGLVKNLALMTHITTENDEKNMLKIM-------YNIGIEHIAM-FNGEELSSPGV 322
A G V + ++ HI + ++ M++++ + I +++A+ F G + PGV
Sbjct: 276 ALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGV 331
>UNIPROTKB|C9J2Y9 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0005634 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
EMBL:AC069307 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HGNC:HGNC:9188 IPI:IPI00894141 ProteinModelPortal:C9J2Y9
STRING:C9J2Y9 Ensembl:ENST00000441246 ArrayExpress:C9J2Y9
Bgee:C9J2Y9 Uniprot:C9J2Y9
Length = 1167
Score = 501 (181.4 bits), Expect = 4.0e-68, Sum P(3) = 4.0e-68
Identities = 108/269 (40%), Positives = 165/269 (61%)
Query: 914 LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
++P+P HNQ+PRNTYQ AMGKQAMG N R+DTL + L Y Q+P+V ++++ F
Sbjct: 703 IIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRF 762
Query: 974 HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
+LPAG N+ +A+ SY+GY+ ED++IMN++++DRGF R + YR+ K +Q + D+
Sbjct: 763 RELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYK---EQESKKGFDQ- 818
Query: 1034 LGPLLEADTRKPVY--RHRA---LDQDGIVAPGEQICERQVLVNKSMPTI--SVSAISMA 1086
+ E TR+ RH LD DG++APG ++ V++ K++ T+ + +
Sbjct: 819 -EEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTV-TLPENEDELEST 876
Query: 1087 TPEY--KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKG 1144
Y ++ + S +++V+V+ N E K+ +R R P+IGDKF+SRHGQKG
Sbjct: 877 NRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKG 936
Query: 1145 VIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
G+ QEDMPF GI PDII+NPH +
Sbjct: 937 TCGIQYRQEDMPFTCEGITPDIIINPHAI 965
Score = 444 (161.4 bits), Expect = 8.9e-80, Sum P(4) = 8.9e-80
Identities = 93/225 (41%), Positives = 132/225 (58%)
Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNS 1206
G+ V +D+ ++ P+ N L+ +R ++ + S +++V+V+ N
Sbjct: 850 GVRVSGDDVIIGKTVTLPE---NEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQ 906
Query: 1207 EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYP 1266
E K+ +R R P+IGDKF+SRHGQKG G+ QEDMPF GI PDII+NPH P
Sbjct: 907 EGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIP 966
Query: 1267 SRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIR-HGYNYQGKDIFYSGIT 1325
SRMT+G LIE L GK +G + T F V L+ +GY+ +G ++ Y+G T
Sbjct: 967 SRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFT 1026
Query: 1326 GEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPT-GR 1369
G + + I+ GP YYQ+LKHMV DKIH+R+RGP +L RQP GR
Sbjct: 1027 GRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGR 1071
Score = 249 (92.7 bits), Expect = 8.9e-80, Sum P(4) = 8.9e-80
Identities = 59/159 (37%), Positives = 93/159 (58%)
Query: 186 FDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQ 244
F++ ++ I++ L ++ TGNW ++ R GV+QVL+RL++ S L + R+NS
Sbjct: 422 FNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSP 481
Query: 245 FEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNI 304
+ K++ PR L + WGM+CP++TPEG A GLVKNLALM +I+ + +L+ +
Sbjct: 482 IGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFL--- 538
Query: 305 GIEHIAMFNGEELSSPGVY---LVFVNGILAGITCHHKE 340
E +M N EE+S + +FVNG GI HK+
Sbjct: 539 --EEWSMENLEEISPAAIADATKIFVNGCWVGI---HKD 572
Score = 219 (82.2 bits), Expect = 8.9e-80, Sum P(4) = 8.9e-80
Identities = 52/137 (37%), Positives = 74/137 (54%)
Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRP------GVTTHLEIAPFTLLGVCAGIEL 745
+ D + G +EY+D E +A++ ++ TH EI P +LGVCA I
Sbjct: 646 WQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASI-- 703
Query: 746 LQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPM 805
+P+P HNQ+PRNTYQ AMGKQAMG N R+DTL + L Y Q+P+
Sbjct: 704 ------------IPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPL 751
Query: 806 VESKTIRITNFHKLPAG 822
V ++++ F +LPAG
Sbjct: 752 VTTRSMEYLRFRELPAG 768
Score = 160 (61.4 bits), Expect = 1.6e-77, Sum P(5) = 1.6e-77
Identities = 44/123 (35%), Positives = 63/123 (51%)
Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
K+ + A++ L + H+ V + KA +L M+ R++LA LDDRD+YGNK
Sbjct: 325 KEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNK 384
Query: 509 RLELAGSLLSLMFEDVFKRFNSELKETNLSGVVNLVSGWWFELKYGNKIYIRSPSRKL-L 567
RL+LAG LL+ +F +FK LKE + + G F L+ K I S K L
Sbjct: 385 RLDLAGPLLAFLFRGMFKNL---LKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSL 441
Query: 568 AAG 570
A G
Sbjct: 442 ATG 444
Score = 112 (44.5 bits), Expect = 1.6e-77, Sum P(5) = 1.6e-77
Identities = 26/59 (44%), Positives = 38/59 (64%)
Query: 358 PHECRLRDLTYSAPITVDIEYT---RGSQRVV--RSDLVIGRMPIMLQSSKCVLRNKTE 411
P+E RLR+LTYSAP+ VDI T G +++ IG++PIML+S+ C+L T+
Sbjct: 103 PNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTD 161
Score = 85 (35.0 bits), Expect = 8.9e-80, Sum P(4) = 8.9e-80
Identities = 13/34 (38%), Positives = 25/34 (73%)
Query: 116 WKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQ 149
W ++ S+ EKGLV+ +DSFD FI + ++++++
Sbjct: 20 WIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE 53
Score = 50 (22.7 bits), Expect = 5.6e-20, Sum P(3) = 5.6e-20
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 536 NLSGVVNLVSGWWFELKYGNKI-YIRSPSRKLLAAGFSGP 574
N+ + NL+S + + L+ GN++ Y RK+ + F GP
Sbjct: 1000 NVQKISNLLSDYGYHLR-GNEVLYNGFTGRKITSQIFIGP 1038
Score = 40 (19.1 bits), Expect = 3.2e-35, Sum P(3) = 3.2e-35
Identities = 16/66 (24%), Positives = 26/66 (39%)
Query: 832 EELTARESCHEVLKIISFSISVAVFDSVWLGDVKQGVHQLSE-EKEPRLLRKFQYFDVRT 890
E+ R+ + I S+ V D+ + + H E E+ PR L KF+ +
Sbjct: 29 EKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEEPPRYLLKFEQIYLSK 88
Query: 891 PYRLRR 896
P R
Sbjct: 89 PTHWER 94
Score = 39 (18.8 bits), Expect = 5.2e-61, Sum P(4) = 5.2e-61
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 1032 RILGPLLEADTRKPVYRHRALDQ 1054
RI PLL + +K + + R +DQ
Sbjct: 613 RICRPLLIVEKQKLLLKKRHIDQ 635
Score = 38 (18.4 bits), Expect = 7.2e-75, Sum P(4) = 7.2e-75
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 39 GLQAILFLPLFKQ-----VDFGDSKVVSLRELLSHVTY 71
G + + LP KQ + F VS R++L H+ Y
Sbjct: 246 GQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIY 283
Score = 38 (18.4 bits), Expect = 7.4e-70, Sum P(5) = 7.4e-70
Identities = 13/56 (23%), Positives = 29/56 (51%)
Query: 275 ACGLVKNLALMTHITTENDEKNMLKIM-------YNIGIEHIAM-FNGEELSSPGV 322
A G V + ++ HI + ++ M++++ + I +++A+ F G + PGV
Sbjct: 268 ALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGV 323
>CGD|CAL0004145 [details] [associations]
symbol:orf19.3349 species:5476 "Candida albicans" [GO:0042493
"response to drug" evidence=IMP] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0000775
"chromosome, centromeric region" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003968 "RNA-directed RNA polymerase activity" evidence=IEA]
[GO:0031048 "chromatin silencing by small RNA" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 CGD:CAL0004145 PANTHER:PTHR20856 GO:GO:0042493
GO:GO:0003677 GO:GO:0006351 EMBL:AACQ01000045 EMBL:AACQ01000042
GO:GO:0003899 eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03010 HOGENOM:HOG000222962
RefSeq:XP_718172.1 RefSeq:XP_718439.1 STRING:Q5A8Y5 GeneID:3639932
GeneID:3640223 KEGG:cal:CaO19.10857 KEGG:cal:CaO19.3349
Uniprot:Q5A8Y5
Length = 1234
Score = 521 (188.5 bits), Expect = 5.4e-74, Sum P(4) = 5.4e-74
Identities = 100/264 (37%), Positives = 164/264 (62%)
Query: 914 LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
++P+P HNQ+PRNTYQ AMGKQAMG N R+DT+ L Y Q+P+ ++++ F
Sbjct: 762 IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYSVRMDTMANILYYPQKPLGTTRSMEYLKF 821
Query: 974 HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
+LPAGQNA +A+ YSGY+ ED++IMN++S+DRG R L +R+ + K+ + +
Sbjct: 822 RELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDIEKRQGMKALETF 881
Query: 1034 LGPLLEADTRKPVY-RHRALDQDGIVAPGEQICERQVLVNKSMPT-ISVSAISMATPEY- 1090
P +DT + + + LD+DG++APG ++ +++ K+ P + T +
Sbjct: 882 EKPT-RSDTLRLKHGTYEKLDEDGLIAPGVRVSGEDIIIGKTTPIPADAEELGQRTQYHT 940
Query: 1091 -KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
++ + + +++VL+++N + + +K+ +R T+ P+IGDKF+SRHGQKG IG+
Sbjct: 941 KRDASTPLRSTESGIVDQVLLTTNGDGSKFVKVRMRTTKVPQIGDKFASRHGQKGTIGVT 1000
Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
EDMPF GI PD+I+NPH +
Sbjct: 1001 YRHEDMPFTAEGIVPDLIINPHAI 1024
Score = 441 (160.3 bits), Expect = 9.2e-80, Sum P(5) = 9.2e-80
Identities = 86/194 (44%), Positives = 122/194 (62%)
Query: 1180 TEY---KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKG 1236
T+Y ++ + + +++VL+++N + + +K+ +R T+ P+IGDKF+SRHGQKG
Sbjct: 936 TQYHTKRDASTPLRSTESGIVDQVLLTTNGDGSKFVKVRMRTTKVPQIGDKFASRHGQKG 995
Query: 1237 VIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFG 1296
IG+ EDMPF GI PD+I+NPH PSRMTV LIE L K + G + + F
Sbjct: 996 TIGVTYRHEDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVSSLSGFEGDASPFT 1055
Query: 1297 GTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSR 1356
+ L HGY +G ++ Y+G TG+ L A ++ GP YYQ+L+HMV DKIHAR+R
Sbjct: 1056 DVTTEQISTLLRDHGYQSRGFEVMYNGHTGKKLMAQVFFGPTYYQRLRHMVDDKIHARAR 1115
Query: 1357 GPRVVLTRQPT-GR 1369
GP VLTRQP GR
Sbjct: 1116 GPVQVLTRQPVEGR 1129
Score = 281 (104.0 bits), Expect = 9.2e-80, Sum P(5) = 9.2e-80
Identities = 61/182 (33%), Positives = 101/182 (55%)
Query: 186 FDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINSQ 244
F++ ++ TIT+ L ++ TGNW +R M R GV+QVL+R +Y S L + R N+
Sbjct: 437 FNVTLAVKSQTITDGLRYSLATGNWGEQRKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTP 496
Query: 245 FEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNI 304
+ K++ PR L + WG++CP++TPEG+ACGLVKNL+LMT I+ + +L + +
Sbjct: 497 IGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGTPSEPILGFLRDY 556
Query: 305 GIEHIAMFNGEELSSPGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHECRLR 364
G+E + + ++P VFVNG+ G+ H + + +P +R
Sbjct: 557 GLEVLEDYVPS--NAPDSTRVFVNGVWVGV--HRDPAALVDFMRELRRSGDLSPEVSIIR 612
Query: 365 DL 366
D+
Sbjct: 613 DI 614
Score = 186 (70.5 bits), Expect = 9.2e-80, Sum P(5) = 9.2e-80
Identities = 42/97 (43%), Positives = 56/97 (57%)
Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
TH EI P +LGV A I +P+P HNQ+PRNTYQ AMGKQAMG N
Sbjct: 746 THCEIHPSMILGVAASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 791
Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
R+DT+ L Y Q+P+ ++++ F +LPAG+
Sbjct: 792 YSVRMDTMANILYYPQKPLGTTRSMEYLKFRELPAGQ 828
Score = 121 (47.7 bits), Expect = 1.1e-68, Sum P(7) = 1.1e-68
Identities = 26/77 (33%), Positives = 43/77 (55%)
Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
A+D L + +I KA +L M+ R++L + DDRD++G KRL+LAG
Sbjct: 347 AKDILQKELLPNITQEEGFETRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGP 406
Query: 516 LLSLMFEDVFKRFNSEL 532
LL+ +F +FK+ ++
Sbjct: 407 LLANLFRILFKKLTKDI 423
Score = 98 (39.6 bits), Expect = 9.2e-80, Sum P(5) = 9.2e-80
Identities = 19/51 (37%), Positives = 32/51 (62%)
Query: 108 DSPEIR-DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSD 157
D P + D W ++ SF +EKGLV +DSFD F+ I++L+ ++++ D
Sbjct: 17 DEPITQEDCWTVITSFFQEKGLVSQQLDSFDEFVETSIQELVWEDSHLILD 67
Score = 79 (32.9 bits), Expect = 1.1e-68, Sum P(7) = 1.1e-68
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSD 389
+ KP E T P E RLR+LTYS+P+ VD+ + +V +SD
Sbjct: 92 ISKPSQTEGDGSTHAVFPQEARLRNLTYSSPLYVDM-----TSKVFKSD 135
Score = 58 (25.5 bits), Expect = 1.1e-68, Sum P(7) = 1.1e-68
Identities = 10/21 (47%), Positives = 17/21 (80%)
Query: 392 IGRMPIMLQSSKCVLRNKTEY 412
+G++PIML+S C+LR+ E+
Sbjct: 161 LGKVPIMLRSKFCMLRDLAEH 181
Score = 39 (18.8 bits), Expect = 3.6e-65, Sum P(4) = 3.6e-65
Identities = 15/76 (19%), Positives = 31/76 (40%)
Query: 1039 EADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKEVPVSYK 1098
+ D Y +L DGIV + E +++ + + S S++ E +++ + +
Sbjct: 667 DEDYENSRYTWSSLVADGIVEYVDAEEEETIMIAMTPDDVKASKNSVSESEQQKIQLEEQ 726
Query: 1099 GSVPSYLEKVLVSSNS 1114
P K S N+
Sbjct: 727 ELDPGKRIKPTTSGNT 742
Score = 38 (18.4 bits), Expect = 9.2e-80, Sum P(5) = 9.2e-80
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 698 EGKIEYLDVNEGNDSHIAVSESGIR 722
+G +EY+D E IA++ ++
Sbjct: 683 DGIVEYVDAEEEETIMIAMTPDDVK 707
>UNIPROTKB|Q5A8Y5 [details] [associations]
symbol:RPB140 "DNA-directed RNA polymerase" species:237561
"Candida albicans SC5314" [GO:0042493 "response to drug"
evidence=IMP] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 CGD:CAL0004145 PANTHER:PTHR20856 GO:GO:0042493
GO:GO:0003677 GO:GO:0006351 EMBL:AACQ01000045 EMBL:AACQ01000042
GO:GO:0003899 eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03010 HOGENOM:HOG000222962
RefSeq:XP_718172.1 RefSeq:XP_718439.1 STRING:Q5A8Y5 GeneID:3639932
GeneID:3640223 KEGG:cal:CaO19.10857 KEGG:cal:CaO19.3349
Uniprot:Q5A8Y5
Length = 1234
Score = 521 (188.5 bits), Expect = 5.4e-74, Sum P(4) = 5.4e-74
Identities = 100/264 (37%), Positives = 164/264 (62%)
Query: 914 LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
++P+P HNQ+PRNTYQ AMGKQAMG N R+DT+ L Y Q+P+ ++++ F
Sbjct: 762 IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYSVRMDTMANILYYPQKPLGTTRSMEYLKF 821
Query: 974 HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
+LPAGQNA +A+ YSGY+ ED++IMN++S+DRG R L +R+ + K+ + +
Sbjct: 822 RELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDIEKRQGMKALETF 881
Query: 1034 LGPLLEADTRKPVY-RHRALDQDGIVAPGEQICERQVLVNKSMPT-ISVSAISMATPEY- 1090
P +DT + + + LD+DG++APG ++ +++ K+ P + T +
Sbjct: 882 EKPT-RSDTLRLKHGTYEKLDEDGLIAPGVRVSGEDIIIGKTTPIPADAEELGQRTQYHT 940
Query: 1091 -KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
++ + + +++VL+++N + + +K+ +R T+ P+IGDKF+SRHGQKG IG+
Sbjct: 941 KRDASTPLRSTESGIVDQVLLTTNGDGSKFVKVRMRTTKVPQIGDKFASRHGQKGTIGVT 1000
Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
EDMPF GI PD+I+NPH +
Sbjct: 1001 YRHEDMPFTAEGIVPDLIINPHAI 1024
Score = 441 (160.3 bits), Expect = 9.2e-80, Sum P(5) = 9.2e-80
Identities = 86/194 (44%), Positives = 122/194 (62%)
Query: 1180 TEY---KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKG 1236
T+Y ++ + + +++VL+++N + + +K+ +R T+ P+IGDKF+SRHGQKG
Sbjct: 936 TQYHTKRDASTPLRSTESGIVDQVLLTTNGDGSKFVKVRMRTTKVPQIGDKFASRHGQKG 995
Query: 1237 VIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFG 1296
IG+ EDMPF GI PD+I+NPH PSRMTV LIE L K + G + + F
Sbjct: 996 TIGVTYRHEDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVSSLSGFEGDASPFT 1055
Query: 1297 GTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSR 1356
+ L HGY +G ++ Y+G TG+ L A ++ GP YYQ+L+HMV DKIHAR+R
Sbjct: 1056 DVTTEQISTLLRDHGYQSRGFEVMYNGHTGKKLMAQVFFGPTYYQRLRHMVDDKIHARAR 1115
Query: 1357 GPRVVLTRQPT-GR 1369
GP VLTRQP GR
Sbjct: 1116 GPVQVLTRQPVEGR 1129
Score = 281 (104.0 bits), Expect = 9.2e-80, Sum P(5) = 9.2e-80
Identities = 61/182 (33%), Positives = 101/182 (55%)
Query: 186 FDIVNHMRQDTITNALTAAIQTGNWTIRRFKME-RQGVTQVLSRLSYISGLGMMTRINSQ 244
F++ ++ TIT+ L ++ TGNW +R M R GV+QVL+R +Y S L + R N+
Sbjct: 437 FNVTLAVKSQTITDGLRYSLATGNWGEQRKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTP 496
Query: 245 FEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNI 304
+ K++ PR L + WG++CP++TPEG+ACGLVKNL+LMT I+ + +L + +
Sbjct: 497 IGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGTPSEPILGFLRDY 556
Query: 305 GIEHIAMFNGEELSSPGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHECRLR 364
G+E + + ++P VFVNG+ G+ H + + +P +R
Sbjct: 557 GLEVLEDYVPS--NAPDSTRVFVNGVWVGV--HRDPAALVDFMRELRRSGDLSPEVSIIR 612
Query: 365 DL 366
D+
Sbjct: 613 DI 614
Score = 186 (70.5 bits), Expect = 9.2e-80, Sum P(5) = 9.2e-80
Identities = 42/97 (43%), Positives = 56/97 (57%)
Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
TH EI P +LGV A I +P+P HNQ+PRNTYQ AMGKQAMG N
Sbjct: 746 THCEIHPSMILGVAASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 791
Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
R+DT+ L Y Q+P+ ++++ F +LPAG+
Sbjct: 792 YSVRMDTMANILYYPQKPLGTTRSMEYLKFRELPAGQ 828
Score = 121 (47.7 bits), Expect = 1.1e-68, Sum P(7) = 1.1e-68
Identities = 26/77 (33%), Positives = 43/77 (55%)
Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
A+D L + +I KA +L M+ R++L + DDRD++G KRL+LAG
Sbjct: 347 AKDILQKELLPNITQEEGFETRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGP 406
Query: 516 LLSLMFEDVFKRFNSEL 532
LL+ +F +FK+ ++
Sbjct: 407 LLANLFRILFKKLTKDI 423
Score = 98 (39.6 bits), Expect = 9.2e-80, Sum P(5) = 9.2e-80
Identities = 19/51 (37%), Positives = 32/51 (62%)
Query: 108 DSPEIR-DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSD 157
D P + D W ++ SF +EKGLV +DSFD F+ I++L+ ++++ D
Sbjct: 17 DEPITQEDCWTVITSFFQEKGLVSQQLDSFDEFVETSIQELVWEDSHLILD 67
Score = 79 (32.9 bits), Expect = 1.1e-68, Sum P(7) = 1.1e-68
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 341 VCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSD 389
+ KP E T P E RLR+LTYS+P+ VD+ + +V +SD
Sbjct: 92 ISKPSQTEGDGSTHAVFPQEARLRNLTYSSPLYVDM-----TSKVFKSD 135
Score = 58 (25.5 bits), Expect = 1.1e-68, Sum P(7) = 1.1e-68
Identities = 10/21 (47%), Positives = 17/21 (80%)
Query: 392 IGRMPIMLQSSKCVLRNKTEY 412
+G++PIML+S C+LR+ E+
Sbjct: 161 LGKVPIMLRSKFCMLRDLAEH 181
Score = 39 (18.8 bits), Expect = 3.6e-65, Sum P(4) = 3.6e-65
Identities = 15/76 (19%), Positives = 31/76 (40%)
Query: 1039 EADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKEVPVSYK 1098
+ D Y +L DGIV + E +++ + + S S++ E +++ + +
Sbjct: 667 DEDYENSRYTWSSLVADGIVEYVDAEEEETIMIAMTPDDVKASKNSVSESEQQKIQLEEQ 726
Query: 1099 GSVPSYLEKVLVSSNS 1114
P K S N+
Sbjct: 727 ELDPGKRIKPTTSGNT 742
Score = 38 (18.4 bits), Expect = 9.2e-80, Sum P(5) = 9.2e-80
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 698 EGKIEYLDVNEGNDSHIAVSESGIR 722
+G +EY+D E IA++ ++
Sbjct: 683 DGIVEYVDAEEEETIMIAMTPDDVK 707
>MGI|MGI:2388280 [details] [associations]
symbol:Polr2b "polymerase (RNA) II (DNA directed)
polypeptide B" species:10090 "Mus musculus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IC;ISO] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0006468 "protein phosphorylation" evidence=ISO]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 MGI:MGI:2388280 PANTHER:PTHR20856 GO:GO:0046872
GO:GO:0003677 GO:GO:0003682 GO:GO:0004672 GO:GO:0006366
GO:GO:0003899 GO:GO:0005665 eggNOG:COG0085 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 KO:K03010 OMA:IMIVFRA
GeneTree:ENSGT00690000102234 HOGENOM:HOG000222962 CTD:5431
HOVERGEN:HBG017744 OrthoDB:EOG4JQ3WQ EMBL:BC038472 IPI:IPI00320034
RefSeq:NP_722493.2 UniGene:Mm.273217 ProteinModelPortal:Q8CFI7
DIP:DIP-57023N IntAct:Q8CFI7 STRING:Q8CFI7 PhosphoSite:Q8CFI7
PaxDb:Q8CFI7 PRIDE:Q8CFI7 Ensembl:ENSMUST00000031167 GeneID:231329
KEGG:mmu:231329 UCSC:uc008xwe.2 InParanoid:Q8CFI7 ChiTaRS:POLR2B
NextBio:380519 Bgee:Q8CFI7 CleanEx:MM_POLR2B Genevestigator:Q8CFI7
GermOnline:ENSMUSG00000029250 Uniprot:Q8CFI7
Length = 1174
Score = 502 (181.8 bits), Expect = 3.2e-68, Sum P(3) = 3.2e-68
Identities = 108/269 (40%), Positives = 165/269 (61%)
Query: 914 LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
++P+P HNQ+PRNTYQ AMGKQAMG N R+DTL + L Y Q+P+V ++++ F
Sbjct: 710 IIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRF 769
Query: 974 HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
+LPAG N+ +A+ SY+GY+ ED++IMN++++DRGF R + YR+ K +Q + D+
Sbjct: 770 RELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYK---EQESKKGFDQ- 825
Query: 1034 LGPLLEADTRKPVY--RH---RALDQDGIVAPGEQICERQVLVNKSMPTI--SVSAISMA 1086
+ E TR+ RH LD DG++APG ++ V++ K++ T+ + +
Sbjct: 826 -EEVFEKPTRETCQGMRHAIYEKLDDDGLIAPGVRVSGDDVIIGKTV-TLPENEDELEST 883
Query: 1087 TPEY--KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKG 1144
Y ++ + S +++V+V+ N E K+ +R R P+IGDKF+SRHGQKG
Sbjct: 884 NRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKG 943
Query: 1145 VIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
G+ QEDMPF GI PDII+NPH +
Sbjct: 944 TCGIQYRQEDMPFTCEGITPDIIINPHAI 972
Score = 444 (161.4 bits), Expect = 9.3e-80, Sum P(4) = 9.3e-80
Identities = 93/225 (41%), Positives = 132/225 (58%)
Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNS 1206
G+ V +D+ ++ P+ N L+ +R ++ + S +++V+V+ N
Sbjct: 857 GVRVSGDDVIIGKTVTLPE---NEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQ 913
Query: 1207 EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYP 1266
E K+ +R R P+IGDKF+SRHGQKG G+ QEDMPF GI PDII+NPH P
Sbjct: 914 EGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIP 973
Query: 1267 SRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIR-HGYNYQGKDIFYSGIT 1325
SRMT+G LIE L GK +G + T F V L+ +GY+ +G ++ Y+G T
Sbjct: 974 SRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFT 1033
Query: 1326 GEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPT-GR 1369
G + + I+ GP YYQ+LKHMV DKIH+R+RGP +L RQP GR
Sbjct: 1034 GRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGR 1078
Score = 249 (92.7 bits), Expect = 9.3e-80, Sum P(4) = 9.3e-80
Identities = 59/159 (37%), Positives = 93/159 (58%)
Query: 186 FDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQ 244
F++ ++ I++ L ++ TGNW ++ R GV+QVL+RL++ S L + R+NS
Sbjct: 429 FNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSP 488
Query: 245 FEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNI 304
+ K++ PR L + WGM+CP++TPEG A GLVKNLALM +I+ + +L+ +
Sbjct: 489 IGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFL--- 545
Query: 305 GIEHIAMFNGEELSSPGVY---LVFVNGILAGITCHHKE 340
E +M N EE+S + +FVNG GI HK+
Sbjct: 546 --EEWSMENLEEISPAAIADATKIFVNGCWVGI---HKD 579
Score = 219 (82.2 bits), Expect = 9.3e-80, Sum P(4) = 9.3e-80
Identities = 52/137 (37%), Positives = 74/137 (54%)
Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRP------GVTTHLEIAPFTLLGVCAGIEL 745
+ D + G +EY+D E +A++ ++ TH EI P +LGVCA I
Sbjct: 653 WQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASI-- 710
Query: 746 LQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPM 805
+P+P HNQ+PRNTYQ AMGKQAMG N R+DTL + L Y Q+P+
Sbjct: 711 ------------IPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPL 758
Query: 806 VESKTIRITNFHKLPAG 822
V ++++ F +LPAG
Sbjct: 759 VTTRSMEYLRFRELPAG 775
Score = 160 (61.4 bits), Expect = 1.7e-77, Sum P(5) = 1.7e-77
Identities = 44/123 (35%), Positives = 63/123 (51%)
Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
K+ + A++ L + H+ V + KA +L M+ R++LA LDDRD+YGNK
Sbjct: 332 KEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNK 391
Query: 509 RLELAGSLLSLMFEDVFKRFNSELKETNLSGVVNLVSGWWFELKYGNKIYIRSPSRKL-L 567
RL+LAG LL+ +F +FK LKE + + G F L+ K I S K L
Sbjct: 392 RLDLAGPLLAFLFRGMFKNL---LKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSL 448
Query: 568 AAG 570
A G
Sbjct: 449 ATG 451
Score = 112 (44.5 bits), Expect = 1.7e-77, Sum P(5) = 1.7e-77
Identities = 26/59 (44%), Positives = 38/59 (64%)
Query: 358 PHECRLRDLTYSAPITVDIEYT---RGSQRVV--RSDLVIGRMPIMLQSSKCVLRNKTE 411
P+E RLR+LTYSAP+ VDI T G +++ IG++PIML+S+ C+L T+
Sbjct: 110 PNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTD 168
Score = 85 (35.0 bits), Expect = 9.3e-80, Sum P(4) = 9.3e-80
Identities = 13/34 (38%), Positives = 25/34 (73%)
Query: 116 WKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQ 149
W ++ S+ EKGLV+ +DSFD FI + ++++++
Sbjct: 27 WIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE 60
Score = 50 (22.7 bits), Expect = 5.7e-20, Sum P(3) = 5.7e-20
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 536 NLSGVVNLVSGWWFELKYGNKI-YIRSPSRKLLAAGFSGP 574
N+ + NL+S + + L+ GN++ Y RK+ + F GP
Sbjct: 1007 NVQKISNLLSDYGYHLR-GNEVLYNGFTGRKITSQIFIGP 1045
Score = 40 (19.1 bits), Expect = 3.3e-35, Sum P(3) = 3.3e-35
Identities = 16/66 (24%), Positives = 26/66 (39%)
Query: 832 EELTARESCHEVLKIISFSISVAVFDSVWLGDVKQGVHQLSE-EKEPRLLRKFQYFDVRT 890
E+ R+ + I S+ V D+ + + H E E+ PR L KF+ +
Sbjct: 36 EKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEEPPRYLLKFEQIYLSK 95
Query: 891 PYRLRR 896
P R
Sbjct: 96 PTHWER 101
Score = 39 (18.8 bits), Expect = 5.4e-61, Sum P(4) = 5.4e-61
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 1032 RILGPLLEADTRKPVYRHRALDQ 1054
RI PLL + +K + + R +DQ
Sbjct: 620 RICRPLLIVEKQKLLLKKRHIDQ 642
Score = 38 (18.4 bits), Expect = 7.5e-75, Sum P(4) = 7.5e-75
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 39 GLQAILFLPLFKQ-----VDFGDSKVVSLRELLSHVTY 71
G + + LP KQ + F VS R++L H+ Y
Sbjct: 253 GQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIY 290
Score = 38 (18.4 bits), Expect = 7.9e-70, Sum P(5) = 7.9e-70
Identities = 13/56 (23%), Positives = 29/56 (51%)
Query: 275 ACGLVKNLALMTHITTENDEKNMLKIM-------YNIGIEHIAM-FNGEELSSPGV 322
A G V + ++ HI + ++ M++++ + I +++A+ F G + PGV
Sbjct: 275 ALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGV 330
>UNIPROTKB|P30876 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase II subunit RPB2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0004672 "protein kinase activity" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IDA;TAS] [GO:0005665 "DNA-directed
RNA polymerase II, core complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=TAS] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=TAS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=TAS] [GO:0008380 "RNA
splicing" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0050434
"positive regulation of viral transcription" evidence=TAS]
[GO:0006468 "protein phosphorylation" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_216 Reactome:REACT_71
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 Reactome:REACT_116125 GO:GO:0016032 GO:GO:0046872
GO:GO:0003677 Reactome:REACT_1675 GO:GO:0006468 EMBL:CH471057
GO:GO:0006368 GO:GO:0006367 GO:GO:0000398 Reactome:REACT_1788
GO:GO:0006370 GO:GO:0050434 GO:GO:0006283 Reactome:REACT_1892
GO:GO:0003899 GO:GO:0005665 eggNOG:COG0085 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 KO:K03010 OMA:IMIVFRA
HOGENOM:HOG000222962 EMBL:X63563 EMBL:AK289823 EMBL:BC023503
EMBL:AF055028 IPI:IPI00027808 PIR:S28976 RefSeq:NP_000929.1
UniGene:Hs.602757 ProteinModelPortal:P30876 DIP:DIP-32910N
IntAct:P30876 MINT:MINT-1216897 STRING:P30876 PhosphoSite:P30876
DMDM:401012 PaxDb:P30876 PeptideAtlas:P30876 PRIDE:P30876
Ensembl:ENST00000314595 Ensembl:ENST00000381227 GeneID:5431
KEGG:hsa:5431 UCSC:uc003hcl.1 CTD:5431 GeneCards:GC04P057760
HGNC:HGNC:9188 HPA:HPA037506 MIM:180661 neXtProt:NX_P30876
PharmGKB:PA33508 HOVERGEN:HBG017744 InParanoid:P30876
OrthoDB:EOG4JQ3WQ PhylomeDB:P30876 GenomeRNAi:5431 NextBio:21013
ArrayExpress:P30876 Bgee:P30876 CleanEx:HS_POLR2B
Genevestigator:P30876 GermOnline:ENSG00000047315 Uniprot:P30876
Length = 1174
Score = 501 (181.4 bits), Expect = 4.1e-68, Sum P(3) = 4.1e-68
Identities = 108/269 (40%), Positives = 165/269 (61%)
Query: 914 LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
++P+P HNQ+PRNTYQ AMGKQAMG N R+DTL + L Y Q+P+V ++++ F
Sbjct: 710 IIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRF 769
Query: 974 HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
+LPAG N+ +A+ SY+GY+ ED++IMN++++DRGF R + YR+ K +Q + D+
Sbjct: 770 RELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYK---EQESKKGFDQ- 825
Query: 1034 LGPLLEADTRKPVY--RHRA---LDQDGIVAPGEQICERQVLVNKSMPTI--SVSAISMA 1086
+ E TR+ RH LD DG++APG ++ V++ K++ T+ + +
Sbjct: 826 -EEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTV-TLPENEDELEST 883
Query: 1087 TPEY--KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKG 1144
Y ++ + S +++V+V+ N E K+ +R R P+IGDKF+SRHGQKG
Sbjct: 884 NRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKG 943
Query: 1145 VIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
G+ QEDMPF GI PDII+NPH +
Sbjct: 944 TCGIQYRQEDMPFTCEGITPDIIINPHAI 972
Score = 444 (161.4 bits), Expect = 9.3e-80, Sum P(4) = 9.3e-80
Identities = 93/225 (41%), Positives = 132/225 (58%)
Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNS 1206
G+ V +D+ ++ P+ N L+ +R ++ + S +++V+V+ N
Sbjct: 857 GVRVSGDDVIIGKTVTLPE---NEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQ 913
Query: 1207 EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYP 1266
E K+ +R R P+IGDKF+SRHGQKG G+ QEDMPF GI PDII+NPH P
Sbjct: 914 EGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIP 973
Query: 1267 SRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIR-HGYNYQGKDIFYSGIT 1325
SRMT+G LIE L GK +G + T F V L+ +GY+ +G ++ Y+G T
Sbjct: 974 SRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFT 1033
Query: 1326 GEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPT-GR 1369
G + + I+ GP YYQ+LKHMV DKIH+R+RGP +L RQP GR
Sbjct: 1034 GRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGR 1078
Score = 249 (92.7 bits), Expect = 9.3e-80, Sum P(4) = 9.3e-80
Identities = 59/159 (37%), Positives = 93/159 (58%)
Query: 186 FDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQ 244
F++ ++ I++ L ++ TGNW ++ R GV+QVL+RL++ S L + R+NS
Sbjct: 429 FNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSP 488
Query: 245 FEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNI 304
+ K++ PR L + WGM+CP++TPEG A GLVKNLALM +I+ + +L+ +
Sbjct: 489 IGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFL--- 545
Query: 305 GIEHIAMFNGEELSSPGVY---LVFVNGILAGITCHHKE 340
E +M N EE+S + +FVNG GI HK+
Sbjct: 546 --EEWSMENLEEISPAAIADATKIFVNGCWVGI---HKD 579
Score = 219 (82.2 bits), Expect = 9.3e-80, Sum P(4) = 9.3e-80
Identities = 52/137 (37%), Positives = 74/137 (54%)
Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRP------GVTTHLEIAPFTLLGVCAGIEL 745
+ D + G +EY+D E +A++ ++ TH EI P +LGVCA I
Sbjct: 653 WQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASI-- 710
Query: 746 LQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPM 805
+P+P HNQ+PRNTYQ AMGKQAMG N R+DTL + L Y Q+P+
Sbjct: 711 ------------IPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPL 758
Query: 806 VESKTIRITNFHKLPAG 822
V ++++ F +LPAG
Sbjct: 759 VTTRSMEYLRFRELPAG 775
Score = 160 (61.4 bits), Expect = 1.7e-77, Sum P(5) = 1.7e-77
Identities = 44/123 (35%), Positives = 63/123 (51%)
Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
K+ + A++ L + H+ V + KA +L M+ R++LA LDDRD+YGNK
Sbjct: 332 KEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNK 391
Query: 509 RLELAGSLLSLMFEDVFKRFNSELKETNLSGVVNLVSGWWFELKYGNKIYIRSPSRKL-L 567
RL+LAG LL+ +F +FK LKE + + G F L+ K I S K L
Sbjct: 392 RLDLAGPLLAFLFRGMFKNL---LKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSL 448
Query: 568 AAG 570
A G
Sbjct: 449 ATG 451
Score = 112 (44.5 bits), Expect = 1.7e-77, Sum P(5) = 1.7e-77
Identities = 26/59 (44%), Positives = 38/59 (64%)
Query: 358 PHECRLRDLTYSAPITVDIEYT---RGSQRVV--RSDLVIGRMPIMLQSSKCVLRNKTE 411
P+E RLR+LTYSAP+ VDI T G +++ IG++PIML+S+ C+L T+
Sbjct: 110 PNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTD 168
Score = 85 (35.0 bits), Expect = 9.3e-80, Sum P(4) = 9.3e-80
Identities = 13/34 (38%), Positives = 25/34 (73%)
Query: 116 WKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQ 149
W ++ S+ EKGLV+ +DSFD FI + ++++++
Sbjct: 27 WIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE 60
Score = 50 (22.7 bits), Expect = 5.7e-20, Sum P(3) = 5.7e-20
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 536 NLSGVVNLVSGWWFELKYGNKI-YIRSPSRKLLAAGFSGP 574
N+ + NL+S + + L+ GN++ Y RK+ + F GP
Sbjct: 1007 NVQKISNLLSDYGYHLR-GNEVLYNGFTGRKITSQIFIGP 1045
Score = 40 (19.1 bits), Expect = 3.3e-35, Sum P(3) = 3.3e-35
Identities = 16/66 (24%), Positives = 26/66 (39%)
Query: 832 EELTARESCHEVLKIISFSISVAVFDSVWLGDVKQGVHQLSE-EKEPRLLRKFQYFDVRT 890
E+ R+ + I S+ V D+ + + H E E+ PR L KF+ +
Sbjct: 36 EKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEEPPRYLLKFEQIYLSK 95
Query: 891 PYRLRR 896
P R
Sbjct: 96 PTHWER 101
Score = 39 (18.8 bits), Expect = 5.4e-61, Sum P(4) = 5.4e-61
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 1032 RILGPLLEADTRKPVYRHRALDQ 1054
RI PLL + +K + + R +DQ
Sbjct: 620 RICRPLLIVEKQKLLLKKRHIDQ 642
Score = 38 (18.4 bits), Expect = 7.5e-75, Sum P(4) = 7.5e-75
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 39 GLQAILFLPLFKQ-----VDFGDSKVVSLRELLSHVTY 71
G + + LP KQ + F VS R++L H+ Y
Sbjct: 253 GQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIY 290
Score = 38 (18.4 bits), Expect = 7.9e-70, Sum P(5) = 7.9e-70
Identities = 13/56 (23%), Positives = 29/56 (51%)
Query: 275 ACGLVKNLALMTHITTENDEKNMLKIM-------YNIGIEHIAM-FNGEELSSPGV 322
A G V + ++ HI + ++ M++++ + I +++A+ F G + PGV
Sbjct: 275 ALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGV 330
>RGD|1309477 [details] [associations]
symbol:Polr2b "polymerase (RNA) II (DNA directed) polypeptide B"
species:10116 "Rattus norvegicus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA;ISO] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0004672 "protein kinase
activity" evidence=IEA;ISO] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=ISO] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IEA;ISO]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA;ISO] [GO:0006468 "protein phosphorylation"
evidence=ISO] [GO:0008150 "biological_process" evidence=ND]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 RGD:1309477 PANTHER:PTHR20856 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03010 GeneTree:ENSGT00690000102234 CTD:5431
EMBL:CH473981 RefSeq:NP_001099472.1 UniGene:Rn.153952
Ensembl:ENSRNOT00000039252 GeneID:289561 KEGG:rno:289561
NextBio:629984 Uniprot:G3V8Y5
Length = 1174
Score = 501 (181.4 bits), Expect = 4.1e-68, Sum P(3) = 4.1e-68
Identities = 108/269 (40%), Positives = 165/269 (61%)
Query: 914 LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
++P+P HNQ+PRNTYQ AMGKQAMG N R+DTL + L Y Q+P+V ++++ F
Sbjct: 710 IIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRF 769
Query: 974 HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
+LPAG N+ +A+ SY+GY+ ED++IMN++++DRGF R + YR+ K +Q + D+
Sbjct: 770 RELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYK---EQESKKGFDQ- 825
Query: 1034 LGPLLEADTRKPVY--RHRA---LDQDGIVAPGEQICERQVLVNKSMPTI--SVSAISMA 1086
+ E TR+ RH LD DG++APG ++ V++ K++ T+ + +
Sbjct: 826 -EEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTV-TLPENEDELEST 883
Query: 1087 TPEY--KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKG 1144
Y ++ + S +++V+V+ N E K+ +R R P+IGDKF+SRHGQKG
Sbjct: 884 NRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKG 943
Query: 1145 VIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
G+ QEDMPF GI PDII+NPH +
Sbjct: 944 TCGIQYRQEDMPFTCEGITPDIIINPHAI 972
Score = 444 (161.4 bits), Expect = 9.3e-80, Sum P(4) = 9.3e-80
Identities = 93/225 (41%), Positives = 132/225 (58%)
Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNS 1206
G+ V +D+ ++ P+ N L+ +R ++ + S +++V+V+ N
Sbjct: 857 GVRVSGDDVIIGKTVTLPE---NEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQ 913
Query: 1207 EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYP 1266
E K+ +R R P+IGDKF+SRHGQKG G+ QEDMPF GI PDII+NPH P
Sbjct: 914 EGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIP 973
Query: 1267 SRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIR-HGYNYQGKDIFYSGIT 1325
SRMT+G LIE L GK +G + T F V L+ +GY+ +G ++ Y+G T
Sbjct: 974 SRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFT 1033
Query: 1326 GEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPT-GR 1369
G + + I+ GP YYQ+LKHMV DKIH+R+RGP +L RQP GR
Sbjct: 1034 GRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGR 1078
Score = 249 (92.7 bits), Expect = 9.3e-80, Sum P(4) = 9.3e-80
Identities = 59/159 (37%), Positives = 93/159 (58%)
Query: 186 FDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQ 244
F++ ++ I++ L ++ TGNW ++ R GV+QVL+RL++ S L + R+NS
Sbjct: 429 FNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSP 488
Query: 245 FEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNI 304
+ K++ PR L + WGM+CP++TPEG A GLVKNLALM +I+ + +L+ +
Sbjct: 489 IGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFL--- 545
Query: 305 GIEHIAMFNGEELSSPGVY---LVFVNGILAGITCHHKE 340
E +M N EE+S + +FVNG GI HK+
Sbjct: 546 --EEWSMENLEEISPAAIADATKIFVNGCWVGI---HKD 579
Score = 219 (82.2 bits), Expect = 9.3e-80, Sum P(4) = 9.3e-80
Identities = 52/137 (37%), Positives = 74/137 (54%)
Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRP------GVTTHLEIAPFTLLGVCAGIEL 745
+ D + G +EY+D E +A++ ++ TH EI P +LGVCA I
Sbjct: 653 WQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASI-- 710
Query: 746 LQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPM 805
+P+P HNQ+PRNTYQ AMGKQAMG N R+DTL + L Y Q+P+
Sbjct: 711 ------------IPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPL 758
Query: 806 VESKTIRITNFHKLPAG 822
V ++++ F +LPAG
Sbjct: 759 VTTRSMEYLRFRELPAG 775
Score = 160 (61.4 bits), Expect = 1.7e-77, Sum P(5) = 1.7e-77
Identities = 44/123 (35%), Positives = 63/123 (51%)
Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
K+ + A++ L + H+ V + KA +L M+ R++LA LDDRD+YGNK
Sbjct: 332 KEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNK 391
Query: 509 RLELAGSLLSLMFEDVFKRFNSELKETNLSGVVNLVSGWWFELKYGNKIYIRSPSRKL-L 567
RL+LAG LL+ +F +FK LKE + + G F L+ K I S K L
Sbjct: 392 RLDLAGPLLAFLFRGMFKNL---LKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSL 448
Query: 568 AAG 570
A G
Sbjct: 449 ATG 451
Score = 112 (44.5 bits), Expect = 1.7e-77, Sum P(5) = 1.7e-77
Identities = 26/59 (44%), Positives = 38/59 (64%)
Query: 358 PHECRLRDLTYSAPITVDIEYT---RGSQRVV--RSDLVIGRMPIMLQSSKCVLRNKTE 411
P+E RLR+LTYSAP+ VDI T G +++ IG++PIML+S+ C+L T+
Sbjct: 110 PNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTD 168
Score = 85 (35.0 bits), Expect = 9.3e-80, Sum P(4) = 9.3e-80
Identities = 13/34 (38%), Positives = 25/34 (73%)
Query: 116 WKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQ 149
W ++ S+ EKGLV+ +DSFD FI + ++++++
Sbjct: 27 WIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE 60
Score = 50 (22.7 bits), Expect = 5.7e-20, Sum P(3) = 5.7e-20
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 536 NLSGVVNLVSGWWFELKYGNKI-YIRSPSRKLLAAGFSGP 574
N+ + NL+S + + L+ GN++ Y RK+ + F GP
Sbjct: 1007 NVQKISNLLSDYGYHLR-GNEVLYNGFTGRKITSQIFIGP 1045
Score = 40 (19.1 bits), Expect = 3.3e-35, Sum P(3) = 3.3e-35
Identities = 16/66 (24%), Positives = 26/66 (39%)
Query: 832 EELTARESCHEVLKIISFSISVAVFDSVWLGDVKQGVHQLSE-EKEPRLLRKFQYFDVRT 890
E+ R+ + I S+ V D+ + + H E E+ PR L KF+ +
Sbjct: 36 EKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEEPPRYLLKFEQIYLSK 95
Query: 891 PYRLRR 896
P R
Sbjct: 96 PTHWER 101
Score = 39 (18.8 bits), Expect = 5.4e-61, Sum P(4) = 5.4e-61
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 1032 RILGPLLEADTRKPVYRHRALDQ 1054
RI PLL + +K + + R +DQ
Sbjct: 620 RICRPLLIVEKQKLLLKKRHIDQ 642
Score = 38 (18.4 bits), Expect = 7.5e-75, Sum P(4) = 7.5e-75
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 39 GLQAILFLPLFKQ-----VDFGDSKVVSLRELLSHVTY 71
G + + LP KQ + F VS R++L H+ Y
Sbjct: 253 GQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIY 290
Score = 38 (18.4 bits), Expect = 7.9e-70, Sum P(5) = 7.9e-70
Identities = 13/56 (23%), Positives = 29/56 (51%)
Query: 275 ACGLVKNLALMTHITTENDEKNMLKIM-------YNIGIEHIAM-FNGEELSSPGV 322
A G V + ++ HI + ++ M++++ + I +++A+ F G + PGV
Sbjct: 275 ALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGV 330
>POMBASE|SPAC23G3.01 [details] [associations]
symbol:rpb2 "RNA polymerase II complex subunit Rpb2"
species:4896 "Schizosaccharomyces pombe" [GO:0000775 "chromosome,
centromeric region" evidence=IDA] [GO:0000790 "nuclear chromatin"
evidence=IC] [GO:0003677 "DNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006366 "transcription from
RNA polymerase II promoter" evidence=IGI] [GO:0031048 "chromatin
silencing by small RNA" evidence=IMP] [GO:0032549 "ribonucleoside
binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IGI] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 PomBase:SPAC23G3.01 PANTHER:PTHR20856 GO:GO:0005829
EMBL:CU329670 GO:GO:0000775 GenomeReviews:CU329670_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0003723 GO:GO:0000790 GO:GO:0006366
GO:GO:0031048 GO:GO:0003899 GO:GO:0005665 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150 PDB:3H0G
PDBsum:3H0G KO:K03010 OMA:IMIVFRA HOGENOM:HOG000222962 EMBL:D13337
PIR:S35548 PIR:T50175 RefSeq:NP_593101.2 ProteinModelPortal:Q02061
IntAct:Q02061 MINT:MINT-1214536 STRING:Q02061
EnsemblFungi:SPAC23G3.01.1 GeneID:2541446 KEGG:spo:SPAC23G3.01
OrthoDB:EOG45HW5D EvolutionaryTrace:Q02061 NextBio:20802548
Uniprot:Q02061
Length = 1210
Score = 540 (195.1 bits), Expect = 6.4e-74, Sum P(3) = 6.4e-74
Identities = 104/263 (39%), Positives = 161/263 (61%)
Query: 914 LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
++P+P HNQ+PRNTYQ AMGKQAMG N Q R+DT+ L Y Q+P+ ++++ F
Sbjct: 744 IIPFPDHNQSPRNTYQSAMGKQAMGVYLTNYQVRMDTMANILYYPQKPLATTRSMEYLKF 803
Query: 974 HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
+LPAGQNA +A++ YSGY+ ED++IMN+AS+DRG R + YR K+ +
Sbjct: 804 RELPAGQNAIVAILCYSGYNQEDSIIMNQASIDRGLFRSIFYRTYTDQEKKIGMTVMEEF 863
Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPT-ISVSAISMATPEY-- 1090
P+ R + L+ DG++APG ++ +++ K+ P + + T +
Sbjct: 864 ERPVRSTTLRMKHGTYDKLEDDGLIAPGTRVSGEDIIIGKTAPIPLDHEELGQRTQLHAK 923
Query: 1091 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
++V + + +++V+V++N E +K+ +R TR P+IGDKF+SRHGQKG IG+
Sbjct: 924 RDVSTPLRSTESGIVDQVMVTTNQEGLKFVKVRMRSTRIPQIGDKFASRHGQKGTIGMTY 983
Query: 1151 EQEDMPFNESGICPDIIMNPHGL 1173
EDMPF+ GI PDII+NPH +
Sbjct: 984 RHEDMPFSAQGIVPDIIINPHAI 1006
Score = 448 (162.8 bits), Expect = 9.6e-79, Sum P(4) = 9.6e-79
Identities = 86/188 (45%), Positives = 119/188 (63%)
Query: 1183 KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1242
++V + + +++V+V++N E +K+ +R TR P+IGDKF+SRHGQKG IG+
Sbjct: 924 RDVSTPLRSTESGIVDQVMVTTNQEGLKFVKVRMRSTRIPQIGDKFASRHGQKGTIGMTY 983
Query: 1243 EQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD 1302
EDMPF+ GI PDII+NPH PSRMTV L+E K + G + T F +
Sbjct: 984 RHEDMPFSAQGIVPDIIINPHAIPSRMTVAHLVECQLSKVSALSGFEGDATPFTDVTVEA 1043
Query: 1303 VQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVL 1362
V + L HG+ +G ++ Y G TG L A ++ GP YYQ+LKH+V DKIHAR+RGP +L
Sbjct: 1044 VSKLLRSHGFQSRGFEVMYHGHTGRKLVAQVFLGPTYYQRLKHLVDDKIHARARGPVQIL 1103
Query: 1363 TRQPT-GR 1369
TRQP GR
Sbjct: 1104 TRQPVEGR 1111
Score = 286 (105.7 bits), Expect = 9.6e-79, Sum P(4) = 9.6e-79
Identities = 55/151 (36%), Positives = 95/151 (62%)
Query: 185 QFDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINS 243
+F++ ++ + ITN L ++ TGNW +R + R GV+QVL+R ++ S L + R N+
Sbjct: 427 EFNLTLAVKSNIITNGLRYSLATGNWGDQKRSMVNRVGVSQVLNRYTFASTLSHLRRTNT 486
Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
+ K++ PR L + WGM+CP++TPEG+ACGLVKNL+LM++++ + +++ +
Sbjct: 487 PIGRDGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSYVSVGSPSAPIIEFLEE 546
Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGI 334
G+E + +N +SP VFVNG+ G+
Sbjct: 547 WGLETLEDYNPS--ASPNATKVFVNGVWLGV 575
Score = 191 (72.3 bits), Expect = 9.6e-79, Sum P(4) = 9.6e-79
Identities = 42/97 (43%), Positives = 57/97 (58%)
Query: 727 THLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
TH EI P +LG+ A I +P+P HNQ+PRNTYQ AMGKQAMG N
Sbjct: 728 THCEIHPAMILGILASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVYLTN 773
Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
Q R+DT+ L Y Q+P+ ++++ F +LPAG+
Sbjct: 774 YQVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQ 810
Score = 131 (51.2 bits), Expect = 3.6e-67, Sum P(6) = 3.6e-67
Identities = 28/77 (36%), Positives = 43/77 (55%)
Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
A D L + HI + KA +L MI RM+L + DDRD++G KRL+LAG
Sbjct: 338 AHDILQKELLPHITTMEGFETRKAFFLGYMIHRMLLCALERREPDDRDHFGKKRLDLAGP 397
Query: 516 LLSLMFEDVFKRFNSEL 532
LL+ +F +F++ ++
Sbjct: 398 LLASLFRMLFRKMTRDV 414
Score = 75 (31.5 bits), Expect = 3.6e-67, Sum P(6) = 3.6e-67
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 343 KPEIEESFNYTRQTTPHECRLRDLTYSAPITVDI 376
+P + E+ T P E RLR+LTYS+P+ VD+
Sbjct: 86 RPTMTEADGSTTTMFPQEARLRNLTYSSPLYVDM 119
Score = 63 (27.2 bits), Expect = 9.6e-79, Sum P(4) = 9.6e-79
Identities = 11/44 (25%), Positives = 25/44 (56%)
Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSD 157
D W ++ SF +E L + + SFD F+ +++++ ++ + D
Sbjct: 16 DCWTVISSFFEETSLARQQLFSFDEFVQNTMQEIVDDDSTLTLD 59
Score = 56 (24.8 bits), Expect = 3.6e-67, Sum P(6) = 3.6e-67
Identities = 10/24 (41%), Positives = 18/24 (75%)
Query: 388 SDLVIGRMPIMLQSSKCVLRNKTE 411
S + IG++PIML+S+ C+L ++
Sbjct: 148 SKVFIGKIPIMLRSTFCILNGVSD 171
Score = 38 (18.4 bits), Expect = 6.7e-62, Sum P(5) = 6.7e-62
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 275 ACGLVKNLALMTHITTENDEKNMLKIM 301
A G+V + ++ HI + ++ ML++M
Sbjct: 274 ALGVVPDRDILEHICYDPNDFQMLEMM 300
Score = 38 (18.4 bits), Expect = 2.3e-20, Sum P(3) = 2.3e-20
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 534 ETNLSGVVNLVSGWWFELKYGNKIYIRSPSRKLLAAGFSGP 574
+ + V L+ F+ + +Y RKL+A F GP
Sbjct: 1038 DVTVEAVSKLLRSHGFQSRGFEVMYHGHTGRKLVAQVFLGP 1078
>ZFIN|ZDB-GENE-041008-1 [details] [associations]
symbol:polr2b "polymerase (RNA) II (DNA directed)
polypeptide B" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 ZFIN:ZDB-GENE-041008-1
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
GeneTree:ENSGT00690000102234 EMBL:AL954718 EMBL:CABZ01048450
EMBL:CABZ01048451 IPI:IPI00944344 Ensembl:ENSDART00000124865
ArrayExpress:F1QXY8 Bgee:F1QXY8 Uniprot:F1QXY8
Length = 1117
Score = 474 (171.9 bits), Expect = 5.3e-66, Sum P(3) = 5.3e-66
Identities = 104/269 (38%), Positives = 162/269 (60%)
Query: 914 LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
++P+P HNQ+PRNTYQ AMGKQAMG N R+DTL + L Y Q+P+V ++++ F
Sbjct: 710 IIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRF 769
Query: 974 HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
+LPAG N+ +A+ SY+GY+ ED++IMN++++DRGF R + YR+ K +Q + D+
Sbjct: 770 RELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYK---EQESKKGFDQ- 825
Query: 1034 LGPLLEADTRKPVY--RHRA---LDQDGIVAPGEQICERQVLVNKSMPTISVS--AISMA 1086
+ E TR+ RH LD DG++APG ++ V++ K++ T+ + +
Sbjct: 826 -EEIFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGEDVIIGKTV-TLPENDDELDST 883
Query: 1087 TPEY--KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKG 1144
Y ++ + S +++V+V+ N E K+ +R R P+IGDKF+SRHGQKG
Sbjct: 884 NRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKG 943
Query: 1145 VIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
G+ QE + GI PDII+NPH +
Sbjct: 944 TCGIQYRQEVRVYIIEGITPDIIINPHAI 972
Score = 422 (153.6 bits), Expect = 9.8e-79, Sum P(4) = 9.8e-79
Identities = 93/225 (41%), Positives = 128/225 (56%)
Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNS 1206
G+ V ED+ ++ P+ N L +R ++ + S +++V+V+ N
Sbjct: 857 GVRVSGEDVIIGKTVTLPE---NDDELDSTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQ 913
Query: 1207 EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYP 1266
E K+ +R R P+IGDKF+SRHGQKG G+ QE + GI PDII+NPH P
Sbjct: 914 EGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEVRVYIIEGITPDIIINPHAIP 973
Query: 1267 SRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD-VQEELIRHGYNYQGKDIFYSGIT 1325
SRMTVG LIE L GK +G + T F V V L +GY+ +G ++ Y+G T
Sbjct: 974 SRMTVGHLIECLQGKVSANKGEIGDATPFNDAVNVQKVSNLLSEYGYHLRGNEVLYNGFT 1033
Query: 1326 GEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPT-GR 1369
G L + I+ GP YYQ+LKHMV DKIH+R+RGP +L RQP GR
Sbjct: 1034 GRKLTSQIFVGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGR 1078
Score = 256 (95.2 bits), Expect = 9.8e-79, Sum P(4) = 9.8e-79
Identities = 59/159 (37%), Positives = 94/159 (59%)
Query: 186 FDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQ 244
F++ ++ I++ L ++ TGNW +++ R GV+QVL+RL++ S L + R+NS
Sbjct: 429 FNLELAIKTRIISDGLKYSLATGNWGDVKKAHQARAGVSQVLNRLTFASTLSHLRRVNSP 488
Query: 245 FEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNI 304
+ K++ PR L + WGM+CP++TPEG A GLVKNLALM +I+ + +L+ +
Sbjct: 489 IGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFL--- 545
Query: 305 GIEHIAMFNGEELSSPGVY---LVFVNGILAGITCHHKE 340
E +M N EE+S + +FVNG GI HK+
Sbjct: 546 --EEWSMENLEEISPAAIADATKIFVNGCWVGI---HKD 579
Score = 224 (83.9 bits), Expect = 9.8e-79, Sum P(4) = 9.8e-79
Identities = 54/137 (39%), Positives = 76/137 (55%)
Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRP-GVT-----THLEIAPFTLLGVCAGIEL 745
+ D + G +EY+D E +A++ ++ GV TH EI P +LGVCA I
Sbjct: 653 WQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASI-- 710
Query: 746 LQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPM 805
+P+P HNQ+PRNTYQ AMGKQAMG N R+DTL + L Y Q+P+
Sbjct: 711 ------------IPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPL 758
Query: 806 VESKTIRITNFHKLPAG 822
V ++++ F +LPAG
Sbjct: 759 VTTRSMEYLRFRELPAG 775
Score = 159 (61.0 bits), Expect = 1.2e-75, Sum P(5) = 1.2e-75
Identities = 44/123 (35%), Positives = 63/123 (51%)
Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
K+ + A++ L + H+ V + KA +L M+ R++LA LDDRD+YGNK
Sbjct: 332 KERRIKYAKEVLQKEVLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNK 391
Query: 509 RLELAGSLLSLMFEDVFKRFNSELKETNLSGVVNLVSGWWFELKYGNKIYIRSPSRKL-L 567
RL+LAG LL+ +F +FK LKE + + G F L+ K I S K L
Sbjct: 392 RLDLAGPLLAFLFRGMFKNL---LKEIRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSL 448
Query: 568 AAG 570
A G
Sbjct: 449 ATG 451
Score = 112 (44.5 bits), Expect = 1.2e-75, Sum P(5) = 1.2e-75
Identities = 26/59 (44%), Positives = 36/59 (61%)
Query: 358 PHECRLRDLTYSAPITVDIEYT-----RGSQRVVRSDLVIGRMPIMLQSSKCVLRNKTE 411
P+E RLR+LTYSAP+ VDI T Q+ IG++PIML+S+ C+L T+
Sbjct: 110 PNEARLRNLTYSAPLYVDITKTIIKDGEEQQQTQHQKTFIGKIPIMLRSTYCLLSGLTD 168
Score = 85 (35.0 bits), Expect = 9.8e-79, Sum P(4) = 9.8e-79
Identities = 13/34 (38%), Positives = 25/34 (73%)
Query: 116 WKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQ 149
W ++ S+ EKGLV+ +DSFD FI + ++++++
Sbjct: 27 WIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE 60
Score = 52 (23.4 bits), Expect = 5.2e-21, Sum P(3) = 5.2e-21
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 536 NLSGVVNLVSGWWFELKYGNKI-YIRSPSRKLLAAGFSGP 574
N+ V NL+S + + L+ GN++ Y RKL + F GP
Sbjct: 1007 NVQKVSNLLSEYGYHLR-GNEVLYNGFTGRKLTSQIFVGP 1045
Score = 42 (19.8 bits), Expect = 2.4e-68, Sum P(5) = 2.4e-68
Identities = 14/56 (25%), Positives = 29/56 (51%)
Query: 275 ACGLVKNLALMTHITTENDEKNMLKIM-------YNIGIEHIAM-FNGEELSSPGV 322
A G V + ++ HI + D+ M++++ + I +++A+ F G + PGV
Sbjct: 275 ALGFVSDRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGV 330
Score = 40 (19.1 bits), Expect = 1.5e-59, Sum P(4) = 1.5e-59
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 1032 RILGPLLEADTRKPVYRHRALDQ 1054
RI PLL + +K + + R +DQ
Sbjct: 620 RICRPLLIVEKQKLLLKRRHIDQ 642
Score = 40 (19.1 bits), Expect = 4.9e-33, Sum P(3) = 4.9e-33
Identities = 16/66 (24%), Positives = 26/66 (39%)
Query: 832 EELTARESCHEVLKIISFSISVAVFDSVWLGDVKQGVHQLSE-EKEPRLLRKFQYFDVRT 890
E+ R+ + I S+ V D+ + + H E E+ PR L KF+ +
Sbjct: 36 EKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHTSGEVEEPPRYLLKFEQIYLSK 95
Query: 891 PYRLRR 896
P R
Sbjct: 96 PTHWER 101
>FB|FBgn0262955 [details] [associations]
symbol:RpII140 "RNA polymerase II 140kD subunit" species:7227
"Drosophila melanogaster" [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=ISS;NAS;IDA] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=ISS;NAS] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS;NAS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0032549 "ribonucleoside
binding" evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 PANTHER:PTHR20856 EMBL:AE014297 GO:GO:0046872
GO:GO:0003677 GO:GO:0006366 GO:GO:0003899 GO:GO:0005665
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03010 OMA:IMIVFRA GeneTree:ENSGT00690000102234 EMBL:X05709
EMBL:BT003265 EMBL:M62972 PIR:A27826 RefSeq:NP_476706.1
UniGene:Dm.6926 ProteinModelPortal:P08266 DIP:DIP-17498N
MINT:MINT-1578011 STRING:P08266 PaxDb:P08266
EnsemblMetazoa:FBtr0082892 GeneID:41721 KEGG:dme:Dmel_CG3180
CTD:41721 FlyBase:FBgn0262955 InParanoid:P08266 OrthoDB:EOG4G1JX8
PhylomeDB:P08266 ChiTaRS:RpII140 GenomeRNAi:41721 NextBio:825231
Bgee:P08266 GermOnline:CG3180 Uniprot:P08266
Length = 1176
Score = 468 (169.8 bits), Expect = 1.2e-63, Sum P(4) = 1.2e-63
Identities = 98/264 (37%), Positives = 156/264 (59%)
Query: 914 LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
++P+P HNQ+PRNTYQ AMGKQAMG N R+DTL + L Y +P+V ++++ F
Sbjct: 712 IIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRSMEYLRF 771
Query: 974 HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
+LPAG N+ +A++ Y+GY+ ED++I+N ++++RGF R + YR+ K + +
Sbjct: 772 RELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSENKRVGDQEENF 831
Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS--AISMATPEYK 1091
P + LD DGI+APG ++ V++ K++ T+ + + T +
Sbjct: 832 EKPHRGTCQGMRNAHYDKLDDDGIIAPGIRVSGDDVVIGKTI-TLPENDDELDSNTKRFS 890
Query: 1092 EVPVS--YKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
+ S + S +++V+++ NSE K+ +R R P+IGDKF+SRHGQKG G+
Sbjct: 891 KRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQ 950
Query: 1150 VEQEDMPFNESGICPDIIMNPHGL 1173
QEDM F G+ PDII+NPH +
Sbjct: 951 YRQEDMAFTCEGLAPDIIINPHAI 974
Score = 438 (159.2 bits), Expect = 3.0e-78, Sum P(4) = 3.0e-78
Identities = 93/230 (40%), Positives = 134/230 (58%)
Query: 1144 GVI--GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVL 1201
G+I G+ V +D+ ++ P+ N L + ++ + S +++V+
Sbjct: 854 GIIAPGIRVSGDDVVIGKTITLPE---NDDELDSNTKRFSKRDASTFLRNSETGIVDQVM 910
Query: 1202 VSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMN 1261
++ NSE K+ +R R P+IGDKF+SRHGQKG G+ QEDM F G+ PDII+N
Sbjct: 911 LTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMAFTCEGLAPDIIIN 970
Query: 1262 PHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVD-VQEELIRHGYNYQGKDIF 1320
PH PSRMT+G LIE L GK G +G + T F V + L +GY+ +G ++
Sbjct: 971 PHAIPSRMTIGHLIECLQGKLGSNKGEIGDATPFNDAVNVQKISTFLQEYGYHLRGNEVM 1030
Query: 1321 YSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPT-GR 1369
Y+G TG + A ++ GP YYQ+LKHMV DKIH+R+RGP +L RQP GR
Sbjct: 1031 YNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGR 1080
Score = 254 (94.5 bits), Expect = 3.0e-78, Sum P(4) = 3.0e-78
Identities = 58/153 (37%), Positives = 91/153 (59%)
Query: 186 FDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQ 244
F++ ++ + IT+ L ++ TGNW ++ R GV+QVL+RL++ S L + R+NS
Sbjct: 430 FNLELAIKTNIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSP 489
Query: 245 FEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNI 304
+ K++ PR L + WGMLCP++TPEG A GLVKNLALM +I+ + +L+ +
Sbjct: 490 IGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFL--- 546
Query: 305 GIEHIAMFNGEELSSPGVY---LVFVNGILAGI 334
E +M N EE++ + +FVNG GI
Sbjct: 547 --EEWSMENLEEIAPSAIADATKIFVNGCWVGI 577
Score = 209 (78.6 bits), Expect = 3.0e-78, Sum P(4) = 3.0e-78
Identities = 53/131 (40%), Positives = 71/131 (54%)
Query: 699 GKIEYLDVNEGNDSHIAVSESGIRPG------VT-THLEIAPFTLLGVCAGIELLQYNKR 751
G +EY+D E IA+S ++ T TH EI P +LGVCA I
Sbjct: 661 GVVEYIDTLEEETVMIAMSPYDLKQDKDYAYCTTYTHCEIHPAMILGVCASI-------- 712
Query: 752 FHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTI 811
+P+P HNQ+PRNTYQ AMGKQAMG N R+DTL + L Y +P+V ++++
Sbjct: 713 ------IPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRSM 766
Query: 812 RITNFHKLPAG 822
F +LPAG
Sbjct: 767 EYLRFRELPAG 777
Score = 153 (58.9 bits), Expect = 1.5e-74, Sum P(5) = 1.5e-74
Identities = 31/78 (39%), Positives = 47/78 (60%)
Query: 456 ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGS 515
A++ L + H+ V + KA +L M+ R++LA LDDRD+YGNKRL+LAG
Sbjct: 340 AKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYGNKRLDLAGP 399
Query: 516 LLSLMFEDVFKRFNSELK 533
LL+ +F +FK E++
Sbjct: 400 LLAFLFRGLFKNLMKEVR 417
Score = 110 (43.8 bits), Expect = 1.5e-74, Sum P(5) = 1.5e-74
Identities = 26/59 (44%), Positives = 39/59 (66%)
Query: 358 PHECRLRDLTYSAPITVDIEYTRGSQRV--VRSD---LVIGRMPIMLQSSKCVLRNKTE 411
P+E RLR+LTYSAP+ VDI T+ + + V + IG++PIML+S+ C+L T+
Sbjct: 111 PNEARLRNLTYSAPLYVDITKTKNVEGLDPVETQHQKTFIGKIPIMLRSTYCLLSQLTD 169
Score = 82 (33.9 bits), Expect = 3.0e-78, Sum P(4) = 3.0e-78
Identities = 22/67 (32%), Positives = 39/67 (58%)
Query: 116 WKLVLSFLKEKGLVKPHIDSFDYFINVEIKKL--------MQANANIYS-DVD--PLFYL 164
W ++ ++ EKGLV+ +DSFD FI + ++++ +QA A S +V+ P F L
Sbjct: 28 WIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGEVETPPRFSL 87
Query: 165 KYLDIHV 171
K+ I++
Sbjct: 88 KFEQIYL 94
Score = 39 (18.8 bits), Expect = 1.0e-35, Sum P(4) = 1.0e-35
Identities = 23/84 (27%), Positives = 35/84 (41%)
Query: 824 CQISPGGAEELTARESCHEVLKIISFSISVAVFDS-VWLGDVKQGVHQLSEEKEPRLLRK 882
CQIS G A+ L RE EV + + + F + + +++ + K K
Sbjct: 1095 CQISHGAAQFL--RERLFEVSD--PYRVHICNFCGLIAIANLRNNTFECKGCKN-----K 1145
Query: 883 FQYFDVRTPYRLRRLLCWECVLYN 906
Q VR PY + LL E + N
Sbjct: 1146 TQISQVRLPYAAK-LLFQELMSMN 1168
Score = 38 (18.4 bits), Expect = 5.2e-67, Sum P(5) = 5.2e-67
Identities = 13/56 (23%), Positives = 29/56 (51%)
Query: 275 ACGLVKNLALMTHITTENDEKNMLKIM-------YNIGIEHIAM-FNGEELSSPGV 322
A G V + ++ HI + D+ M++++ + + +++A+ F G + PGV
Sbjct: 276 ALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVVQEQNVALNFIGARGARPGV 331
Score = 38 (18.4 bits), Expect = 1.1e-17, Sum P(5) = 1.1e-17
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 536 NLSGVVNLVSGWWFELKYGNKI-YIRSPSRKLLAAGFSGP 574
N+ + + + + L+ GN++ Y RK+ A F GP
Sbjct: 1009 NVQKISTFLQEYGYHLR-GNEVMYNGHTGRKINAQVFLGP 1047
Score = 37 (18.1 bits), Expect = 1.2e-63, Sum P(4) = 1.2e-63
Identities = 6/16 (37%), Positives = 12/16 (75%)
Query: 489 MVLALSDPDMLDDRDY 504
+++A+S D+ D+DY
Sbjct: 674 VMIAMSPYDLKQDKDY 689
>UNIPROTKB|C9J4M6 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0005634 GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 EMBL:AC069307 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 HGNC:HGNC:9188 IPI:IPI00873948 STRING:C9J4M6
Ensembl:ENST00000431623 UCSC:uc011caf.1 ArrayExpress:C9J4M6
Bgee:C9J4M6 Uniprot:C9J4M6
Length = 1099
Score = 501 (181.4 bits), Expect = 2.1e-63, Sum P(3) = 2.1e-63
Identities = 108/269 (40%), Positives = 165/269 (61%)
Query: 914 LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
++P+P HNQ+PRNTYQ AMGKQAMG N R+DTL + L Y Q+P+V ++++ F
Sbjct: 635 IIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRF 694
Query: 974 HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
+LPAG N+ +A+ SY+GY+ ED++IMN++++DRGF R + YR+ K +Q + D+
Sbjct: 695 RELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYK---EQESKKGFDQ- 750
Query: 1034 LGPLLEADTRKPVY--RHRA---LDQDGIVAPGEQICERQVLVNKSMPTI--SVSAISMA 1086
+ E TR+ RH LD DG++APG ++ V++ K++ T+ + +
Sbjct: 751 -EEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTV-TLPENEDELEST 808
Query: 1087 TPEY--KEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKG 1144
Y ++ + S +++V+V+ N E K+ +R R P+IGDKF+SRHGQKG
Sbjct: 809 NRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKG 868
Query: 1145 VIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
G+ QEDMPF GI PDII+NPH +
Sbjct: 869 TCGIQYRQEDMPFTCEGITPDIIINPHAI 897
Score = 444 (161.4 bits), Expect = 4.3e-75, Sum P(4) = 4.3e-75
Identities = 93/225 (41%), Positives = 132/225 (58%)
Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNS 1206
G+ V +D+ ++ P+ N L+ +R ++ + S +++V+V+ N
Sbjct: 782 GVRVSGDDVIIGKTVTLPE---NEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQ 838
Query: 1207 EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYP 1266
E K+ +R R P+IGDKF+SRHGQKG G+ QEDMPF GI PDII+NPH P
Sbjct: 839 EGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIP 898
Query: 1267 SRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIR-HGYNYQGKDIFYSGIT 1325
SRMT+G LIE L GK +G + T F V L+ +GY+ +G ++ Y+G T
Sbjct: 899 SRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFT 958
Query: 1326 GEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPT-GR 1369
G + + I+ GP YYQ+LKHMV DKIH+R+RGP +L RQP GR
Sbjct: 959 GRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGR 1003
Score = 249 (92.7 bits), Expect = 4.3e-75, Sum P(4) = 4.3e-75
Identities = 59/159 (37%), Positives = 93/159 (58%)
Query: 186 FDIVNHMRQDTITNALTAAIQTGNW-TIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQ 244
F++ ++ I++ L ++ TGNW ++ R GV+QVL+RL++ S L + R+NS
Sbjct: 354 FNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSP 413
Query: 245 FEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNI 304
+ K++ PR L + WGM+CP++TPEG A GLVKNLALM +I+ + +L+ +
Sbjct: 414 IGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFL--- 470
Query: 305 GIEHIAMFNGEELSSPGVY---LVFVNGILAGITCHHKE 340
E +M N EE+S + +FVNG GI HK+
Sbjct: 471 --EEWSMENLEEISPAAIADATKIFVNGCWVGI---HKD 504
Score = 219 (82.2 bits), Expect = 4.3e-75, Sum P(4) = 4.3e-75
Identities = 52/137 (37%), Positives = 74/137 (54%)
Query: 692 FDDFLYEGKIEYLDVNEGNDSHIAVSESGIRP------GVTTHLEIAPFTLLGVCAGIEL 745
+ D + G +EY+D E +A++ ++ TH EI P +LGVCA I
Sbjct: 578 WQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASI-- 635
Query: 746 LQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPM 805
+P+P HNQ+PRNTYQ AMGKQAMG N R+DTL + L Y Q+P+
Sbjct: 636 ------------IPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPL 683
Query: 806 VESKTIRITNFHKLPAG 822
V ++++ F +LPAG
Sbjct: 684 VTTRSMEYLRFRELPAG 700
Score = 160 (61.4 bits), Expect = 1.6e-73, Sum P(4) = 1.6e-73
Identities = 44/123 (35%), Positives = 63/123 (51%)
Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
K+ + A++ L + H+ V + KA +L M+ R++LA LDDRD+YGNK
Sbjct: 257 KEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNK 316
Query: 509 RLELAGSLLSLMFEDVFKRFNSELKETNLSGVVNLVSGWWFELKYGNKIYIRSPSRKL-L 567
RL+LAG LL+ +F +FK LKE + + G F L+ K I S K L
Sbjct: 317 RLDLAGPLLAFLFRGMFKNL---LKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSL 373
Query: 568 AAG 570
A G
Sbjct: 374 ATG 376
Score = 112 (44.5 bits), Expect = 1.6e-73, Sum P(4) = 1.6e-73
Identities = 26/59 (44%), Positives = 38/59 (64%)
Query: 358 PHECRLRDLTYSAPITVDIEYT---RGSQRVV--RSDLVIGRMPIMLQSSKCVLRNKTE 411
P+E RLR+LTYSAP+ VDI T G +++ IG++PIML+S+ C+L T+
Sbjct: 35 PNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTD 93
Score = 50 (22.7 bits), Expect = 2.8e-15, Sum P(3) = 2.8e-15
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 536 NLSGVVNLVSGWWFELKYGNKI-YIRSPSRKLLAAGFSGP 574
N+ + NL+S + + L+ GN++ Y RK+ + F GP
Sbjct: 932 NVQKISNLLSDYGYHLR-GNEVLYNGFTGRKITSQIFIGP 970
Score = 39 (18.8 bits), Expect = 2.4e-56, Sum P(4) = 2.4e-56
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 1032 RILGPLLEADTRKPVYRHRALDQ 1054
RI PLL + +K + + R +DQ
Sbjct: 545 RICRPLLIVEKQKLLLKKRHIDQ 567
Score = 38 (18.4 bits), Expect = 4.3e-75, Sum P(4) = 4.3e-75
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 39 GLQAILFLPLFKQ-----VDFGDSKVVSLRELLSHVTY 71
G + + LP KQ + F VS R++L H+ Y
Sbjct: 178 GQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIY 215
Score = 38 (18.4 bits), Expect = 8.2e-66, Sum P(4) = 8.2e-66
Identities = 13/56 (23%), Positives = 29/56 (51%)
Query: 275 ACGLVKNLALMTHITTENDEKNMLKIM-------YNIGIEHIAM-FNGEELSSPGV 322
A G V + ++ HI + ++ M++++ + I +++A+ F G + PGV
Sbjct: 200 ALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGV 255
>UNIPROTKB|F8VRE2 [details] [associations]
symbol:POLR3B "DNA-directed RNA polymerase III subunit
RPC2" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR015712
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
EMBL:AC009721 GO:GO:0032549 EMBL:AC078992 EMBL:AC080012
HGNC:HGNC:30348 IPI:IPI01022248 ProteinModelPortal:F8VRE2
SMR:F8VRE2 Ensembl:ENST00000551370 ArrayExpress:F8VRE2 Bgee:F8VRE2
Uniprot:F8VRE2
Length = 676
Score = 594 (214.2 bits), Expect = 1.1e-64, Sum P(2) = 1.1e-64
Identities = 118/209 (56%), Positives = 150/209 (71%)
Query: 133 IDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDIHVGXXXXXXXXXXXXQFDIVNHM 192
+D DY+ N ++ Q + ++ D+ F + I QFD+V HM
Sbjct: 351 VDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKI----ADQVIPKQRAAQFDVVKHM 406
Query: 193 RQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINSQFEKTRKVS 252
RQD ITN + AI TGNW+++RFKM+RQGVTQVLSRLSYIS LGMMTRI+SQFEKTRKVS
Sbjct: 407 RQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVS 466
Query: 253 GPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAMF 312
GPRSLQ SQWGMLCPSDTPEGEACGLVKNLALMTHITT+ ++ ++K+ N+G+E + +
Sbjct: 467 GPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLL 526
Query: 313 NGEELSSPGVYLVFVNGILAGITCHHKEV 341
GEELS P V+LVF+NG + G+ HK++
Sbjct: 527 CGEELSYPNVFLVFLNGNILGVIRDHKKL 555
Score = 281 (104.0 bits), Expect = 1.3e-50, Sum P(3) = 1.3e-50
Identities = 63/111 (56%), Positives = 79/111 (71%)
Query: 303 NIGIEHIAMFNGEELSS---PGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPH 359
N+ I+ I N E+++S P YL ++N I G+ P++EESFN TR +PH
Sbjct: 52 NVEIKKIMKAN-EKVTSDADPMWYLKYLN-IYVGL---------PDVEESFNVTRPVSPH 100
Query: 360 ECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKT 410
ECRLRD+TYSAPITVDIEYTRGSQR++R+ L IGRMPIML+SS CVL KT
Sbjct: 101 ECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKT 151
Score = 279 (103.3 bits), Expect = 1.3e-50, Sum P(3) = 1.3e-50
Identities = 51/86 (59%), Positives = 70/86 (81%)
Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
KKT +++AR+ L+ST + H+PV F+ K +Y AVM+RR++LA D + +DDRDYYGNK
Sbjct: 302 KKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQGD-NKVDDRDYYGNK 360
Query: 509 RLELAGSLLSLMFEDVFKRFNSELKE 534
RLELAG LLSL+FED+FK+FNSE+K+
Sbjct: 361 RLELAGQLLSLLFEDLFKKFNSEMKK 386
Score = 231 (86.4 bits), Expect = 2.2e-45, Sum P(3) = 2.2e-45
Identities = 41/63 (65%), Positives = 54/63 (85%)
Query: 110 PEIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFYLKYLDI 169
P + +KW+L+ +FLK KGLVK HIDSF+YFINVEIKK+M+AN + SD DP++YLKYL+I
Sbjct: 21 PTVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMWYLKYLNI 80
Query: 170 HVG 172
+VG
Sbjct: 81 YVG 83
Score = 106 (42.4 bits), Expect = 1.1e-64, Sum P(2) = 1.1e-64
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 677 RPTFLNMHQ---FLGFKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGI 721
+P N H G++ F+DFL+E +EYLDVNE ND +IA+ E I
Sbjct: 603 KPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTI 650
Score = 43 (20.2 bits), Expect = 4.6e-58, Sum P(2) = 4.6e-58
Identities = 10/50 (20%), Positives = 21/50 (42%)
Query: 1057 IVAPGEQICERQVLVNKSMPTISVSAISMATPEYKEVPVSYKGSVPSYLE 1106
I + G ++C ++V K P ++ + Y+ S+ YL+
Sbjct: 585 ISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLD 634
>WB|WBGene00008781 [details] [associations]
symbol:rpoa-2 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0043652 "engulfment of apoptotic cell" evidence=IMP]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007647 InterPro:IPR009674 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04567 Pfam:PF06883 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0005634 GO:GO:0009792 GO:GO:0040007 GO:GO:0002119
GO:GO:0003677 GO:GO:0006351 GO:GO:0040035 GO:GO:0043652
GO:GO:0003899 HSSP:P08518 eggNOG:COG0085 KO:K03002 OMA:EVFAGVT
GO:GO:0032549 Gene3D:2.40.270.10 GeneTree:ENSGT00550000074993
HOGENOM:HOG000222963 EMBL:Z75535 PIR:T20870 RefSeq:NP_492476.1
ProteinModelPortal:Q27493 SMR:Q27493 STRING:Q27493 PaxDb:Q27493
EnsemblMetazoa:F14B4.3 GeneID:172752 KEGG:cel:CELE_F14B4.3
UCSC:F14B4.3 CTD:172752 WormBase:F14B4.3 InParanoid:Q27493
NextBio:876871 Uniprot:Q27493
Length = 1127
Score = 384 (140.2 bits), Expect = 3.4e-60, Sum P(4) = 3.4e-60
Identities = 81/185 (43%), Positives = 110/185 (59%)
Query: 1194 PSYLEKVLVSSNSE-DAFLIKMLL--RQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFN 1250
P+Y V + E D+ L+ R R P IGDKF+SRHGQKG+ + E +PF+
Sbjct: 820 PAYCGLVRIVEQGEGDSGAKHALIQWRIERNPIIGDKFASRHGQKGINSFLWPVESLPFS 879
Query: 1251 ESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAF----GGTKLVDVQEE 1306
E+G+ PDII NPHG+PSRMT+G +IE +AGKA G + + F T + E
Sbjct: 880 ETGMVPDIIFNPHGFPSRMTIGMMIESMAGKAAATHGENYDASPFVFNEDNTAINHFGEL 939
Query: 1307 LIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQP 1366
L + GYNY G + FYSG+ G +E I+ G VYYQ+L+HM+ DK R+ GP +T QP
Sbjct: 940 LTKAGYNYYGNETFYSGVDGRQMEMQIFFGIVYYQRLRHMIADKFQVRATGPIDPITHQP 999
Query: 1367 T-GRR 1370
GR+
Sbjct: 1000 VKGRK 1004
Score = 260 (96.6 bits), Expect = 3.4e-60, Sum P(4) = 3.4e-60
Identities = 48/103 (46%), Positives = 66/103 (64%)
Query: 914 LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
L+P+P HNQ+PRN YQC MGKQ MG + +R D MY L + Q+PM++ +
Sbjct: 652 LIPFPDHNQSPRNVYQCQMGKQTMGTAVHAWHSRADNKMYRLQFPQQPMLKLEAYEKYEM 711
Query: 974 HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYR 1016
+ P G NA +AV+SY+GYD+EDA+ +NKAS RGF V +
Sbjct: 712 DEYPLGTNACVAVISYTGYDMEDAMTINKASYQRGFAHGTVIK 754
Score = 165 (63.1 bits), Expect = 8.8e-37, Sum P(4) = 8.8e-37
Identities = 46/130 (35%), Positives = 66/130 (50%)
Query: 1043 RKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKEVPVSYKGSVP 1102
R P + + DG+ PG R L T ++ T ++ +Y G V
Sbjct: 772 RNPREEIKTVGPDGLPIPGR----RYFLDEVYYVTFNMETGDFRTHKFHYAEPAYCGLV- 826
Query: 1103 SYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGI 1162
+E+ S ++ A LI+ R R P IGDKF+SRHGQKG+ + E +PF+E+G+
Sbjct: 827 RIVEQGEGDSGAKHA-LIQW--RIERNPIIGDKFASRHGQKGINSFLWPVESLPFSETGM 883
Query: 1163 CPDIIMNPHG 1172
PDII NPHG
Sbjct: 884 VPDIIFNPHG 893
Score = 164 (62.8 bits), Expect = 3.2e-50, Sum P(4) = 3.2e-50
Identities = 40/122 (32%), Positives = 57/122 (46%)
Query: 701 IEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPY 760
+E++ E + + PGVT H E+ P L AG L+P+
Sbjct: 610 VEHIGTFEQVYLSVVLDPEEAEPGVTMHQELHPSCLFSF-AG-------------NLIPF 655
Query: 761 PHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLP 820
P HNQ+PRN YQC MGKQ MG + +R D MY L + Q+PM++ + + P
Sbjct: 656 PDHNQSPRNVYQCQMGKQTMGTAVHAWHSRADNKMYRLQFPQQPMLKLEAYEKYEMDEYP 715
Query: 821 AG 822
G
Sbjct: 716 LG 717
Score = 128 (50.1 bits), Expect = 3.4e-60, Sum P(4) = 3.4e-60
Identities = 38/151 (25%), Positives = 71/151 (47%)
Query: 190 NHMRQDTITNALTAAIQTGNWTIR-RFKMERQ-GVTQVLSRLSYISGLGMMTRIN-SQFE 246
NH + IT + + TGN R ++++ G + + R++ + + I+ F
Sbjct: 394 NHTGGE-ITRGMAYFLATGNLVTRVGLALQQESGFSVIAERINQLRFVSHFRAIHRGAFF 452
Query: 247 KTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTE-NDEKNMLKIMYNIG 305
+ + R L+ WG +CP TP+G CGL+ ++ I T+ +D N+ ++ +G
Sbjct: 453 MEMRTTDVRKLRPEAWGFICPVHTPDGAPCGLLNHVTASCRIVTDLSDNSNVPSLLAELG 512
Query: 306 I-EHIAMFNGEELSSPG--VYLVFVNGILAG 333
+ H + L+ PG +Y V +NG G
Sbjct: 513 MYTHKTV----ALAPPGEELYPVLMNGRFLG 539
Score = 105 (42.0 bits), Expect = 8.3e-58, Sum P(4) = 8.3e-58
Identities = 24/68 (35%), Positives = 37/68 (54%)
Query: 343 KPEIEESFNYTRQTTP---HECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIML 399
KP ++ T T P ECR R LTY+ + V I+ R+ ++++G++PIML
Sbjct: 52 KPTLDTGAKLTSDTLPLLPAECRQRGLTYAGNLKVGIDVHVNGSRLDIIEIILGKVPIML 111
Query: 400 QSSKCVLR 407
+S C LR
Sbjct: 112 RSEGCHLR 119
Score = 40 (19.1 bits), Expect = 3.4e-60, Sum P(4) = 3.4e-60
Identities = 5/10 (50%), Positives = 9/10 (90%)
Query: 132 HIDSFDYFIN 141
H+DSFD+ ++
Sbjct: 9 HVDSFDFLVS 18
>UNIPROTKB|F1NLV9 [details] [associations]
symbol:F1NLV9 "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0005736 "DNA-directed
RNA polymerase I complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0007566 "embryo implantation" evidence=IEA]
[GO:0009303 "rRNA transcription" evidence=IEA] [GO:0009790 "embryo
development" evidence=IEA] [GO:0017126 "nucleologenesis"
evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR009674 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF06883 PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005737
GO:GO:0003677 GO:GO:0009303 GO:GO:0005736 GO:GO:0003899 OMA:EVFAGVT
GO:GO:0032549 Gene3D:2.40.270.10 GeneTree:ENSGT00550000074993
GO:GO:0017126 EMBL:AADN02041199 IPI:IPI00576768
Ensembl:ENSGALT00000014017 Uniprot:F1NLV9
Length = 1016
Score = 412 (150.1 bits), Expect = 2.2e-56, Sum P(3) = 2.2e-56
Identities = 86/191 (45%), Positives = 117/191 (61%)
Query: 1187 VSYKGSVPSYLEKVLVSSNSEDAFLIK---MLLRQTRRPEIGDKFSSRHGQKGVIGLIVE 1243
V Y+ ++ + + SN K + +R R P +GDKF+SRHGQKG++ +
Sbjct: 724 VYYQNKEVGIVDNIKLCSNDRGTGKFKKACITVRVPRNPTVGDKFASRHGQKGILSQLWP 783
Query: 1244 QEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTK---- 1299
EDMPF E+G+ PDI+ NPHG+PSRMT+G LIE +AGK+ + G Y + T F T+
Sbjct: 784 VEDMPFTENGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGAYYDATPFTFTEKNSA 843
Query: 1300 LVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPR 1359
L E L+ GYN+ G + YSGI+G LEA I+ G VYYQ+L+HMV DK R+ GPR
Sbjct: 844 LKYFGETLVSAGYNFFGTEKMYSGISGVELEADIFVGVVYYQRLRHMVSDKFQVRTTGPR 903
Query: 1360 VVLTRQPT-GR 1369
+T QP GR
Sbjct: 904 DSVTNQPIKGR 914
Score = 403 (146.9 bits), Expect = 1.9e-40, Sum P(2) = 1.9e-40
Identities = 95/262 (36%), Positives = 139/262 (53%)
Query: 914 LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
L+P+ HNQ+PRN YQC MGKQ MG YN ++R D +Y L Q P+V +
Sbjct: 558 LIPFSDHNQSPRNMYQCQMGKQTMGFPVYNYKDRSDNKLYLLHTPQSPLVRPRMYDYYGM 617
Query: 974 HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
P G N+ +AV+SYSGYD+EDA+I+NK+S +RGF V + L N+ D +
Sbjct: 618 DSYPVGTNSVVAVISYSGYDMEDAMIVNKSSWERGFAYGSVIKMESIDLSLKANRGGDNL 677
Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKEV 1093
+ + D P + + LD DG+ G ++ P S +++ T E
Sbjct: 678 VFGIRPGD---PNVKEK-LDADGLPFVGS-------ILQPGDPFYSY--MNLNTGE--TF 722
Query: 1094 PVSYKGSVPSYLEKVLVSSNSEDAFLIK---MLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
V Y+ ++ + + SN K + +R R P +GDKF+SRHGQKG++ +
Sbjct: 723 TVYYQNKEVGIVDNIKLCSNDRGTGKFKKACITVRVPRNPTVGDKFASRHGQKGILSQLW 782
Query: 1151 EQEDMPFNESGICPDIIMNPHG 1172
EDMPF E+G+ PDI+ NPHG
Sbjct: 783 PVEDMPFTENGMVPDILFNPHG 804
Score = 192 (72.6 bits), Expect = 2.2e-56, Sum P(3) = 2.2e-56
Identities = 47/129 (36%), Positives = 65/129 (50%)
Query: 694 DFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFH 753
+ LY G+ E++ E ++A ES + PGVTTH E+ P ++L V A
Sbjct: 510 NLLY-GRKEWIGTLEQVFMNVATMESDVMPGVTTHQELFPHSILSVVAN----------- 557
Query: 754 SPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRI 813
L+P+ HNQ+PRN YQC MGKQ MG YN ++R D +Y L Q P+V +
Sbjct: 558 ---LIPFSDHNQSPRNMYQCQMGKQTMGFPVYNYKDRSDNKLYLLHTPQSPLVRPRMYDY 614
Query: 814 TNFHKLPAG 822
P G
Sbjct: 615 YGMDSYPVG 623
Score = 120 (47.3 bits), Expect = 2.2e-56, Sum P(3) = 2.2e-56
Identities = 32/105 (30%), Positives = 52/105 (49%)
Query: 191 HMRQDTITNALTAAIQTGNWTIRRF--KMERQGVTQVLSRLSYISGLGMMTRIN--SQFE 246
+M D +T + + TGN + ++ G+ V +L+++ L I+ S F
Sbjct: 306 NMTTD-VTKSFEYLLATGNLRSKTGLGMLQDSGLCVVGDKLNFVRYLSHFRCIHRGSAFA 364
Query: 247 KTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTE 291
+ R + R L WG LCP DTP+GE CGL+ ++ + I TE
Sbjct: 365 QMRTTT-VRKLLPESWGFLCPVDTPDGEPCGLMNHMTAVCEIVTE 408
Score = 65 (27.9 bits), Expect = 3.7e-50, Sum P(4) = 3.7e-50
Identities = 20/69 (28%), Positives = 35/69 (50%)
Query: 454 DDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDR-DYYGNKRLEL 512
+ A DF+ + CI I++ + + YL M+ R + A + + ++D D N+ +
Sbjct: 206 EQAADFIFNKCIC----IHLTDRTEKFYLLCMMTRKLCAFAKGECMEDNPDSLMNQEVLT 261
Query: 513 AGSLLSLMF 521
AG L LMF
Sbjct: 262 AGQLF-LMF 269
Score = 41 (19.5 bits), Expect = 3.7e-50, Sum P(4) = 3.7e-50
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 392 IGRMPIMLQSSKCVLRN 408
+G +PIM++S C L N
Sbjct: 19 VGFVPIMVKSKLCNLYN 35
Score = 38 (18.4 bits), Expect = 7.5e-50, Sum P(4) = 7.5e-50
Identities = 9/36 (25%), Positives = 19/36 (52%)
Query: 295 KNMLKIMYNIGIEHIAMFNGEELSSPGVYLVFVNGI 330
K+ L +YN+ + + + EE G +++ NG+
Sbjct: 27 KSKLCNLYNLSPQELIQHHEEEEEMGGYFII--NGL 60
Score = 38 (18.4 bits), Expect = 8.2e-33, Sum P(2) = 8.2e-33
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 84 WLGTVKAVHGTYLTMVTD 101
W+GT++ V TM +D
Sbjct: 518 WIGTLEQVFMNVATMESD 535
>GENEDB_PFALCIPARUM|PF11_0358 [details] [associations]
symbol:PF11_0358 "DNA-directed RNA polymerase,
beta subunit, putative" species:5833 "Plasmodium falciparum"
[GO:0005736 "DNA-directed RNA polymerase I complex" evidence=ISS]
[GO:0006360 "transcription from RNA polymerase I promoter"
evidence=ISS] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04563
Pfam:PF04565 PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0003677
EMBL:AE014186 GO:GO:0006360 GO:GO:0005736 GO:GO:0003899 KO:K03002
GO:GO:0032549 Gene3D:2.40.270.10 RefSeq:XP_001348029.1
ProteinModelPortal:Q8II17 EnsemblProtists:PF11_0358:mRNA
GeneID:810905 KEGG:pfa:PF11_0358 EuPathDB:PlasmoDB:PF3D7_1134700
HOGENOM:HOG000282443 OMA:ENINIDM ProtClustDB:CLSZ2433354
Uniprot:Q8II17
Length = 1517
Score = 418 (152.2 bits), Expect = 1.5e-54, Sum P(4) = 1.5e-54
Identities = 93/262 (35%), Positives = 144/262 (54%)
Query: 914 LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
L P+ HNQ+PRN YQC M KQ MG N +Y ++ Q P+V ++
Sbjct: 947 LTPFSDHNQSPRNIYQCQMLKQTMGIQSLNNVYTFTNKIYRMITPQFPLVVTRDYEFYGV 1006
Query: 974 HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
P+G NA +A+++Y+GYD+EDALI+NKAS DRG R +Y+ L++ ++ + +
Sbjct: 1007 DNFPSGTNAVVAILAYTGYDMEDALIINKASADRGIFRTHIYKTEFIDLQKV-GESSNFV 1065
Query: 1034 LGPLLE-ADTRKPVYRHRALDQDGIVAPGEQI-CERQVLVNKSMPTISVSAISMATPEYK 1091
G + + K ++ A + G + + C +Q + S P S Y+
Sbjct: 1066 FGNNIRYLNNNKNNNKNLAYENKGKFLNKDGLPCVQQKITEGS-PLYSYINKGNELTTYE 1124
Query: 1092 EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVE 1151
S++ +++ V + N+ + + + LR TR+P++GDKF+SRHGQKGV+ +
Sbjct: 1125 ----SFRNHGEYFVDFVSIGKNNSNQVAV-VKLRSTRQPQVGDKFASRHGQKGVVSRLFP 1179
Query: 1152 QEDMPFNESGICPDIIMNPHGL 1173
QEDMPF ESGI PDII NPHG+
Sbjct: 1180 QEDMPFAESGIVPDIIFNPHGI 1201
Score = 281 (104.0 bits), Expect = 5.1e-47, Sum P(5) = 5.1e-47
Identities = 60/149 (40%), Positives = 90/149 (60%)
Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNS 1206
G + ++ +P + I + + KG + +T Y+ S++ +++ V + N+
Sbjct: 1089 GKFLNKDGLPCVQQKITEGSPLYSYINKG-NELTTYE----SFRNHGEYFVDFVSIGKNN 1143
Query: 1207 EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYP 1266
+ + + LR TR+P++GDKF+SRHGQKGV+ + QEDMPF ESGI PDII NPHG P
Sbjct: 1144 SNQVAV-VKLRSTRQPQVGDKFASRHGQKGVVSRLFPQEDMPFAESGIVPDIIFNPHGIP 1202
Query: 1267 SRMTVGKLIELLAGKAGLMEGNYKEGTAF 1295
SRMT+G LIE + GKA + G + T F
Sbjct: 1203 SRMTIGMLIESICGKAASLYGKRIDATPF 1231
Score = 162 (62.1 bits), Expect = 1.5e-54, Sum P(4) = 1.5e-54
Identities = 31/65 (47%), Positives = 42/65 (64%)
Query: 1307 LIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQP 1366
L+ GY+Y G ++ YSGI G L+A+I+ G +YYQ+L+HM DK R GP LT QP
Sbjct: 1335 LLNKGYDYYGTELLYSGIYGVPLQAHIFIGVIYYQRLRHMAYDKAQVRRTGPVCNLTHQP 1394
Query: 1367 T-GRR 1370
G+R
Sbjct: 1395 LKGKR 1399
Score = 121 (47.7 bits), Expect = 1.5e-54, Sum P(4) = 1.5e-54
Identities = 35/117 (29%), Positives = 58/117 (49%)
Query: 198 TNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINS----QFEKTRKVSG 253
++A+ +TGN + +++ + + I+ L ++T + F + KV
Sbjct: 549 SSAILFFFKTGNISSENLHYQQKSGWVIAA--DEINNLRLITNFRAIHRGTFFQDVKVLT 606
Query: 254 PRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHI-TTENDEKNMLKI-MY--NIGI 306
PR L G WG +CP TP+G CGL+ +LA HI ++E + L I +Y IGI
Sbjct: 607 PRKLLGESWGFICPVHTPDGTPCGLLNHLAQYCHIHNLSSNEAHKLNIKLYLKKIGI 663
Score = 118 (46.6 bits), Expect = 5.1e-47, Sum P(5) = 5.1e-47
Identities = 23/66 (34%), Positives = 32/66 (48%)
Query: 757 LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 816
L P+ HNQ+PRN YQC M KQ MG N +Y ++ Q P+V ++
Sbjct: 947 LTPFSDHNQSPRNIYQCQMLKQTMGIQSLNNVYTFTNKIYRMITPQFPLVVTRDYEFYGV 1006
Query: 817 HKLPAG 822
P+G
Sbjct: 1007 DNFPSG 1012
Score = 73 (30.8 bits), Expect = 1.5e-49, Sum P(4) = 1.5e-49
Identities = 17/69 (24%), Positives = 31/69 (44%)
Query: 340 EVCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIML 399
++ P I+ R P+ C+L TY + + I + + + + G +PIM+
Sbjct: 127 QIKNPMIKNDKGEYRADYPYLCKLSARTYEGELLIKIN-RQYKDEIASTTICAGHIPIMI 185
Query: 400 QSSKCVLRN 408
S+ C L N
Sbjct: 186 MSNLCNLSN 194
Score = 63 (27.2 bits), Expect = 1.5e-54, Sum P(4) = 1.5e-54
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 126 KGLVKPHIDSFDYFINVEIKKLMQ 149
K LV+ HID F+ FINV IK + +
Sbjct: 69 KFLVQSHIDDFNSFINVYIKNIAE 92
Score = 48 (22.0 bits), Expect = 7.1e-40, Sum P(5) = 7.1e-40
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 694 DFLYEGKIEYLDVNEGNDSHIAVSESG 720
+F++ I YL+ N+ N+ ++A G
Sbjct: 1063 NFVFGNNIRYLNNNKNNNKNLAYENKG 1089
Score = 40 (19.1 bits), Expect = 5.8e-15, Sum P(5) = 5.8e-15
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 781 GCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
G G+ ++N DT+ +L Q+ ++K I N +K+ K
Sbjct: 1249 GIKGFLEKN--DTIKSDLDTCQKEKDKNKNINNNNNNKIKENK 1289
Score = 39 (18.8 bits), Expect = 4.9e-46, Sum P(4) = 4.9e-46
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 457 RDFLSST--CIAHIPVINM 473
+D ++ST C HIP++ M
Sbjct: 168 KDEIASTTICAGHIPIMIM 186
Score = 39 (18.8 bits), Expect = 4.7e-34, Sum P(5) = 4.7e-34
Identities = 12/49 (24%), Positives = 24/49 (48%)
Query: 1096 SYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRH-GQK 1143
++K ++ YL+K+ ++ N +D I + P I D + G+K
Sbjct: 649 AHKLNIKLYLKKIGINVNLDDTSGIHTIYDDENIPIIVDSIPITYIGEK 697
Score = 39 (18.8 bits), Expect = 9.6e-10, Sum P(4) = 9.6e-10
Identities = 12/49 (24%), Positives = 24/49 (48%)
Query: 1188 SYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRH-GQK 1235
++K ++ YL+K+ ++ N +D I + P I D + G+K
Sbjct: 649 AHKLNIKLYLKKIGINVNLDDTSGIHTIYDDENIPIIVDSIPITYIGEK 697
Score = 39 (18.8 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 122 FLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVD 159
+ ++K P ID N IK ++ N I SD+D
Sbjct: 1234 YTQQKSFNNPWID------NCGIKGFLEKNDTIKSDLD 1265
>UNIPROTKB|Q8II17 [details] [associations]
symbol:PF11_0358 "DNA-directed RNA polymerase"
species:36329 "Plasmodium falciparum 3D7" [GO:0005736 "DNA-directed
RNA polymerase I complex" evidence=ISS] [GO:0006360 "transcription
from RNA polymerase I promoter" evidence=ISS] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04563 Pfam:PF04565 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 EMBL:AE014186 GO:GO:0006360 GO:GO:0005736
GO:GO:0003899 KO:K03002 GO:GO:0032549 Gene3D:2.40.270.10
RefSeq:XP_001348029.1 ProteinModelPortal:Q8II17
EnsemblProtists:PF11_0358:mRNA GeneID:810905 KEGG:pfa:PF11_0358
EuPathDB:PlasmoDB:PF3D7_1134700 HOGENOM:HOG000282443 OMA:ENINIDM
ProtClustDB:CLSZ2433354 Uniprot:Q8II17
Length = 1517
Score = 418 (152.2 bits), Expect = 1.5e-54, Sum P(4) = 1.5e-54
Identities = 93/262 (35%), Positives = 144/262 (54%)
Query: 914 LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
L P+ HNQ+PRN YQC M KQ MG N +Y ++ Q P+V ++
Sbjct: 947 LTPFSDHNQSPRNIYQCQMLKQTMGIQSLNNVYTFTNKIYRMITPQFPLVVTRDYEFYGV 1006
Query: 974 HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
P+G NA +A+++Y+GYD+EDALI+NKAS DRG R +Y+ L++ ++ + +
Sbjct: 1007 DNFPSGTNAVVAILAYTGYDMEDALIINKASADRGIFRTHIYKTEFIDLQKV-GESSNFV 1065
Query: 1034 LGPLLE-ADTRKPVYRHRALDQDGIVAPGEQI-CERQVLVNKSMPTISVSAISMATPEYK 1091
G + + K ++ A + G + + C +Q + S P S Y+
Sbjct: 1066 FGNNIRYLNNNKNNNKNLAYENKGKFLNKDGLPCVQQKITEGS-PLYSYINKGNELTTYE 1124
Query: 1092 EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVE 1151
S++ +++ V + N+ + + + LR TR+P++GDKF+SRHGQKGV+ +
Sbjct: 1125 ----SFRNHGEYFVDFVSIGKNNSNQVAV-VKLRSTRQPQVGDKFASRHGQKGVVSRLFP 1179
Query: 1152 QEDMPFNESGICPDIIMNPHGL 1173
QEDMPF ESGI PDII NPHG+
Sbjct: 1180 QEDMPFAESGIVPDIIFNPHGI 1201
Score = 281 (104.0 bits), Expect = 5.1e-47, Sum P(5) = 5.1e-47
Identities = 60/149 (40%), Positives = 90/149 (60%)
Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNS 1206
G + ++ +P + I + + KG + +T Y+ S++ +++ V + N+
Sbjct: 1089 GKFLNKDGLPCVQQKITEGSPLYSYINKG-NELTTYE----SFRNHGEYFVDFVSIGKNN 1143
Query: 1207 EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYP 1266
+ + + LR TR+P++GDKF+SRHGQKGV+ + QEDMPF ESGI PDII NPHG P
Sbjct: 1144 SNQVAV-VKLRSTRQPQVGDKFASRHGQKGVVSRLFPQEDMPFAESGIVPDIIFNPHGIP 1202
Query: 1267 SRMTVGKLIELLAGKAGLMEGNYKEGTAF 1295
SRMT+G LIE + GKA + G + T F
Sbjct: 1203 SRMTIGMLIESICGKAASLYGKRIDATPF 1231
Score = 162 (62.1 bits), Expect = 1.5e-54, Sum P(4) = 1.5e-54
Identities = 31/65 (47%), Positives = 42/65 (64%)
Query: 1307 LIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQP 1366
L+ GY+Y G ++ YSGI G L+A+I+ G +YYQ+L+HM DK R GP LT QP
Sbjct: 1335 LLNKGYDYYGTELLYSGIYGVPLQAHIFIGVIYYQRLRHMAYDKAQVRRTGPVCNLTHQP 1394
Query: 1367 T-GRR 1370
G+R
Sbjct: 1395 LKGKR 1399
Score = 121 (47.7 bits), Expect = 1.5e-54, Sum P(4) = 1.5e-54
Identities = 35/117 (29%), Positives = 58/117 (49%)
Query: 198 TNALTAAIQTGNWTIRRFKMERQGVTQVLSRLSYISGLGMMTRINS----QFEKTRKVSG 253
++A+ +TGN + +++ + + I+ L ++T + F + KV
Sbjct: 549 SSAILFFFKTGNISSENLHYQQKSGWVIAA--DEINNLRLITNFRAIHRGTFFQDVKVLT 606
Query: 254 PRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHI-TTENDEKNMLKI-MY--NIGI 306
PR L G WG +CP TP+G CGL+ +LA HI ++E + L I +Y IGI
Sbjct: 607 PRKLLGESWGFICPVHTPDGTPCGLLNHLAQYCHIHNLSSNEAHKLNIKLYLKKIGI 663
Score = 118 (46.6 bits), Expect = 5.1e-47, Sum P(5) = 5.1e-47
Identities = 23/66 (34%), Positives = 32/66 (48%)
Query: 757 LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 816
L P+ HNQ+PRN YQC M KQ MG N +Y ++ Q P+V ++
Sbjct: 947 LTPFSDHNQSPRNIYQCQMLKQTMGIQSLNNVYTFTNKIYRMITPQFPLVVTRDYEFYGV 1006
Query: 817 HKLPAG 822
P+G
Sbjct: 1007 DNFPSG 1012
Score = 73 (30.8 bits), Expect = 1.5e-49, Sum P(4) = 1.5e-49
Identities = 17/69 (24%), Positives = 31/69 (44%)
Query: 340 EVCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIML 399
++ P I+ R P+ C+L TY + + I + + + + G +PIM+
Sbjct: 127 QIKNPMIKNDKGEYRADYPYLCKLSARTYEGELLIKIN-RQYKDEIASTTICAGHIPIMI 185
Query: 400 QSSKCVLRN 408
S+ C L N
Sbjct: 186 MSNLCNLSN 194
Score = 63 (27.2 bits), Expect = 1.5e-54, Sum P(4) = 1.5e-54
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 126 KGLVKPHIDSFDYFINVEIKKLMQ 149
K LV+ HID F+ FINV IK + +
Sbjct: 69 KFLVQSHIDDFNSFINVYIKNIAE 92
Score = 48 (22.0 bits), Expect = 7.1e-40, Sum P(5) = 7.1e-40
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 694 DFLYEGKIEYLDVNEGNDSHIAVSESG 720
+F++ I YL+ N+ N+ ++A G
Sbjct: 1063 NFVFGNNIRYLNNNKNNNKNLAYENKG 1089
Score = 40 (19.1 bits), Expect = 5.8e-15, Sum P(5) = 5.8e-15
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 781 GCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
G G+ ++N DT+ +L Q+ ++K I N +K+ K
Sbjct: 1249 GIKGFLEKN--DTIKSDLDTCQKEKDKNKNINNNNNNKIKENK 1289
Score = 39 (18.8 bits), Expect = 4.9e-46, Sum P(4) = 4.9e-46
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 457 RDFLSST--CIAHIPVINM 473
+D ++ST C HIP++ M
Sbjct: 168 KDEIASTTICAGHIPIMIM 186
Score = 39 (18.8 bits), Expect = 4.7e-34, Sum P(5) = 4.7e-34
Identities = 12/49 (24%), Positives = 24/49 (48%)
Query: 1096 SYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRH-GQK 1143
++K ++ YL+K+ ++ N +D I + P I D + G+K
Sbjct: 649 AHKLNIKLYLKKIGINVNLDDTSGIHTIYDDENIPIIVDSIPITYIGEK 697
Score = 39 (18.8 bits), Expect = 9.6e-10, Sum P(4) = 9.6e-10
Identities = 12/49 (24%), Positives = 24/49 (48%)
Query: 1188 SYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRH-GQK 1235
++K ++ YL+K+ ++ N +D I + P I D + G+K
Sbjct: 649 AHKLNIKLYLKKIGINVNLDDTSGIHTIYDDENIPIIVDSIPITYIGEK 697
Score = 39 (18.8 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 122 FLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVD 159
+ ++K P ID N IK ++ N I SD+D
Sbjct: 1234 YTQQKSFNNPWID------NCGIKGFLEKNDTIKSDLD 1265
>CGD|CAL0002109 [details] [associations]
symbol:RPA135 species:5476 "Candida albicans" [GO:0005736
"DNA-directed RNA polymerase I complex" evidence=IEA] [GO:0042790
"transcription of nuclear large rRNA transcript from RNA polymerase
I promoter" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007647 InterPro:IPR009674
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04567 Pfam:PF06883
PROSITE:PS01166 CGD:CAL0002109 PANTHER:PTHR20856 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 EMBL:AACQ01000024 GO:GO:0003899
eggNOG:COG0085 KO:K03002 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 RefSeq:XP_720354.1 RefSeq:XP_888689.1
STRING:Q5AFK6 GeneID:3637996 GeneID:3704205 KEGG:cal:CaO19.7062
KEGG:cal:CaO19_7062 Uniprot:Q5AFK6
Length = 1166
Score = 436 (158.5 bits), Expect = 6.7e-53, Sum P(3) = 6.7e-53
Identities = 94/191 (49%), Positives = 120/191 (62%)
Query: 1188 SYKGSVPSYLEKVLV---SSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQ 1244
+Y S P+Y+E+V + SN ++ I + R TR+P IGDKFSSRHGQKGV Q
Sbjct: 848 TYHSSEPAYIEEVKLLGDDSNEQEGQQITIKYRITRQPLIGDKFSSRHGQKGVCSRKWPQ 907
Query: 1245 EDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFG----GTKL 1300
DMPF ESG+ PD+I+NPH +PSRMT+G +E LAGKAG + G ++ T + T
Sbjct: 908 IDMPFTESGMQPDVIINPHAFPSRMTIGMFVESLAGKAGALHGIAQDSTPWKFNEQDTPA 967
Query: 1301 VDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRV 1360
E+L++ GYNY G + YSG TGE L IY G VYYQ+L+HMV DK RS GP
Sbjct: 968 DYFGEQLLKAGYNYHGNEPMYSGATGEELRCDIYIGCVYYQRLRHMVNDKFQVRSTGPVN 1027
Query: 1361 VLTRQPT-GRR 1370
LT QP GR+
Sbjct: 1028 SLTMQPVKGRK 1038
Score = 416 (151.5 bits), Expect = 3.9e-42, Sum P(2) = 3.9e-42
Identities = 102/261 (39%), Positives = 140/261 (53%)
Query: 914 LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
L P+ NQ+PRN YQC MGKQ MG G +R D +Y L Q P+V++
Sbjct: 678 LTPFSDFNQSPRNMYQCQMGKQTMGTPGTALVHRSDNKLYRLQTGQTPIVKANLYDDYGM 737
Query: 974 HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
P G NA +AV+SY+GYD++DA+I+NK++ +RGFG VY+ K L Q + D I
Sbjct: 738 DNFPNGMNAIVAVISYTGYDMDDAMIINKSADERGFGYGTVYKTEKVDLSQ-SRRRGDPI 796
Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKEV 1093
P LD DG+ G V V + P ++ ++ + K
Sbjct: 797 TQHFGFGSDEWPEAWKEKLDADGLPLIG-------VKVEEGDPIVAYYDDTLGKTKVK-- 847
Query: 1094 PVSYKGSVPSYLEKVLV---SSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIV 1150
+Y S P+Y+E+V + SN ++ I + R TR+P IGDKFSSRHGQKGV
Sbjct: 848 --TYHSSEPAYIEEVKLLGDDSNEQEGQQITIKYRITRQPLIGDKFSSRHGQKGVCSRKW 905
Query: 1151 EQEDMPFNESGICPDIIMNPH 1171
Q DMPF ESG+ PD+I+NPH
Sbjct: 906 PQIDMPFTESGMQPDVIINPH 926
Score = 132 (51.5 bits), Expect = 6.7e-53, Sum P(3) = 6.7e-53
Identities = 34/110 (30%), Positives = 49/110 (44%)
Query: 713 HIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQ 772
++AV+ I + +H+E P +L + A L P+ NQ+PRN YQ
Sbjct: 648 NVAVTPEEIENNIHSHVEFTPTNILSILAN--------------LTPFSDFNQSPRNMYQ 693
Query: 773 CAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAG 822
C MGKQ MG G +R D +Y L Q P+V++ P G
Sbjct: 694 CQMGKQTMGTPGTALVHRSDNKLYRLQTGQTPIVKANLYDDYGMDNFPNG 743
Score = 125 (49.1 bits), Expect = 6.7e-53, Sum P(3) = 6.7e-53
Identities = 42/152 (27%), Positives = 69/152 (45%)
Query: 195 DTITNALTAAIQTGNWTIRRFKMERQ---GVTQVLSRLSY---ISGLGMMTRINSQFEKT 248
+ I L + TGN + + ++ Q G T V ++++ IS M+ R F
Sbjct: 432 ENIGQKLQYFLSTGN-LVSQSGLDLQQVSGYTVVAEKINFYRFISHFRMVHR--GSFFAE 488
Query: 249 RKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTE-NDEKNMLKIMYNIGIE 307
K + R L WG LCP TP+G CGL+ +L+ I TE +D + K + +G+
Sbjct: 489 LKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLSHKCKIATEASDVSQVPKALTQLGVL 548
Query: 308 HIAMFNGEELSSPGVYLVFVNGILAGITCHHK 339
F + P + V ++G + G T H +
Sbjct: 549 PADSF----AAGPNLCCVQLDGKIVGWTTHEQ 576
Score = 99 (39.9 bits), Expect = 2.1e-51, Sum P(4) = 2.1e-51
Identities = 20/69 (28%), Positives = 40/69 (57%)
Query: 340 EVCKPEI--EESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPI 397
++ KP + + + R+T P ECR R +TY + + +++ ++ + V G++PI
Sbjct: 85 QLAKPSVPANDKLSLNRKTFPSECRERMVTYRSRLMLNVTWSVNDEEEVSEVREAGQIPI 144
Query: 398 MLQSSKCVL 406
ML+S++C L
Sbjct: 145 MLKSNRCHL 153
Score = 58 (25.5 bits), Expect = 2.1e-51, Sum P(4) = 2.1e-51
Identities = 21/109 (19%), Positives = 50/109 (45%)
Query: 453 VDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLEL 512
++ ++ L + H+P +F+M L MIR++ ++ D+ D ++ + L
Sbjct: 326 IEVGKEVLKRIVLVHLPNNADKFRM----LLFMIRKLYSLVAGDCAPDNPDATQHQEVLL 381
Query: 513 AGSLLSLMFEDVFKRFNSELKETNLSGVVNLVSGWWFE-LKYGNKIYIR 560
G L ++ ++ + + +K + +N G F+ KY +++ R
Sbjct: 382 GGFLYGMIIKEKIEEYLQNIK-LQIQSDINRGVGINFDDRKYMTRVFSR 429
Score = 42 (19.8 bits), Expect = 1.7e-43, Sum P(3) = 1.7e-43
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 1044 KPVYRHRALDQDGIVAPGEQI 1064
+PV ++ LD++ IV P EQ+
Sbjct: 626 RPV-KYLPLDKEDIVGPFEQV 645
>SGD|S000006214 [details] [associations]
symbol:RPA135 "RNA polymerase I second largest subunit A135"
species:4932 "Saccharomyces cerevisiae" [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0042790
"transcription of nuclear large rRNA transcript from RNA polymerase
I promoter" evidence=IGI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005736 "DNA-directed
RNA polymerase I complex" evidence=IDA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA;IDA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007647
InterPro:IPR009674 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04567 Pfam:PF06883 PROSITE:PS01166 SGD:S000006214
PANTHER:PTHR20856 GO:GO:0046872 GO:GO:0003677 EMBL:Z71255
EMBL:U31900 EMBL:BK006949 EMBL:Z49919 GO:GO:0005736 GO:GO:0003899
GO:GO:0042790 eggNOG:COG0085 KO:K03002 GO:GO:0032549
Gene3D:2.40.270.10 GeneTree:ENSGT00550000074993 Gene3D:2.40.50.150
HOGENOM:HOG000222963 OrthoDB:EOG4W11N4 EMBL:M62804 PIR:A39607
RefSeq:NP_015335.1 ProteinModelPortal:P22138 DIP:DIP-135N
IntAct:P22138 MINT:MINT-423299 STRING:P22138 PaxDb:P22138
PeptideAtlas:P22138 EnsemblFungi:YPR010C GeneID:856119
KEGG:sce:YPR010C CYGD:YPR010c OMA:FNLLIFM NextBio:981198
Genevestigator:P22138 GermOnline:YPR010C Uniprot:P22138
Length = 1203
Score = 425 (154.7 bits), Expect = 9.2e-53, Sum P(3) = 9.2e-53
Identities = 93/192 (48%), Positives = 119/192 (61%)
Query: 1188 SYKGSVPSYLEKV-LVSSNS---EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVE 1243
+Y S P+Y+E+V L+ S ++ + + R R P+IGDKFSSRHGQKGV
Sbjct: 873 TYHSSEPAYIEEVNLIGDESNKFQELQTVSIKYRIRRTPQIGDKFSSRHGQKGVCSRKWP 932
Query: 1244 QEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAF----GGTK 1299
DMPF+E+GI PDII+NPH +PSRMT+G +E LAGKAG + G ++ T + T
Sbjct: 933 TIDMPFSETGIQPDIIINPHAFPSRMTIGMFVESLAGKAGALHGIAQDSTPWIFNEDDTP 992
Query: 1300 LVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPR 1359
E+L + GYNY G + YSG TGE L A IY G VYYQ+L+HMV DK RS GP
Sbjct: 993 ADYFGEQLAKAGYNYHGNEPMYSGATGEELRADIYVGVVYYQRLRHMVNDKFQVRSTGPV 1052
Query: 1360 VVLTRQPT-GRR 1370
LT QP GR+
Sbjct: 1053 NSLTMQPVKGRK 1064
Score = 388 (141.6 bits), Expect = 1.8e-39, Sum P(2) = 1.8e-39
Identities = 98/262 (37%), Positives = 139/262 (53%)
Query: 914 LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
L P+ NQ+PRN YQC MGKQ MG G +R D +Y L Q P+V++
Sbjct: 703 LTPFSDFNQSPRNMYQCQMGKQTMGTPGVALCHRSDNKLYRLQTGQTPIVKANLYDDYGM 762
Query: 974 HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
P G NA +AV+SY+GYD++DA+I+NK++ +RGFG +Y+ K L N+ D I
Sbjct: 763 DNFPNGFNAVVAVISYTGYDMDDAMIINKSADERGFGYGTMYKTEKVDLALNRNRG-DPI 821
Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKEV 1093
+ P LD+DG+ G + E + T++ + I
Sbjct: 822 TQHFGFGNDEWPKEWLEKLDEDGLPYIGTYVEEGDPICAYFDDTLNKTKIK--------- 872
Query: 1094 PVSYKGSVPSYLEKV-LVSSNS---EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
+Y S P+Y+E+V L+ S ++ + + R R P+IGDKFSSRHGQKGV
Sbjct: 873 --TYHSSEPAYIEEVNLIGDESNKFQELQTVSIKYRIRRTPQIGDKFSSRHGQKGVCSRK 930
Query: 1150 VEQEDMPFNESGICPDIIMNPH 1171
DMPF+E+GI PDII+NPH
Sbjct: 931 WPTIDMPFSETGIQPDIIINPH 952
Score = 139 (54.0 bits), Expect = 9.2e-53, Sum P(3) = 9.2e-53
Identities = 37/110 (33%), Positives = 50/110 (45%)
Query: 713 HIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQ 772
+IAV+ I+ V TH+E P +L + A L P+ NQ+PRN YQ
Sbjct: 673 NIAVTPQEIQNNVHTHVEFTPTNILSILAN--------------LTPFSDFNQSPRNMYQ 718
Query: 773 CAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAG 822
C MGKQ MG G +R D +Y L Q P+V++ P G
Sbjct: 719 CQMGKQTMGTPGVALCHRSDNKLYRLQTGQTPIVKANLYDDYGMDNFPNG 768
Score = 129 (50.5 bits), Expect = 9.2e-53, Sum P(3) = 9.2e-53
Identities = 42/156 (26%), Positives = 74/156 (47%)
Query: 192 MR-QDTITNALTAAIQTGNWTIRRFKMERQ---GVTQVLSRLSY---ISGLGMMTRINSQ 244
MR + I + + + TGN + + ++ Q G T V ++++ IS M+ R
Sbjct: 451 MRVNENIGSKMQYFLSTGN-LVSQSGLDLQQVSGYTVVAEKINFYRFISHFRMVHR--GS 507
Query: 245 FEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTE-NDEKNMLKIMYN 303
F K + R L WG LCP TP+G CGL+ + A I+T+ +D + I+Y+
Sbjct: 508 FFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHFAHKCRISTQQSDVSRIPSILYS 567
Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGITCHHK 339
+G+ A + + P + V ++G + G H +
Sbjct: 568 LGV---APASHTFAAGPSLCCVQIDGKIIGWVSHEQ 600
Score = 78 (32.5 bits), Expect = 1.9e-47, Sum P(3) = 1.9e-47
Identities = 29/124 (23%), Positives = 59/124 (47%)
Query: 301 MYNIGIEHIA---MFNGEELSSPGVYLVFVNGILAG---ITCHHKEVCKPEIEESFNYT- 353
+ N+G++ I +F+G+ L+S + +G L ++ + KP + +
Sbjct: 60 LLNLGVKDIGEKVIFDGKPLNSEDE--ISNSGYLGNKLSVSVEQVSIAKPMSNDGVSSAV 117
Query: 354 -RQTTPHECRLRDLTYSAPITVDIEYT--RGSQRV--VRSDLVIGRMPIMLQSSKCVLRN 408
R+ P E R R +Y + + ++++ G + + VR G +P+MLQS++C L
Sbjct: 118 ERKVYPSESRQRLTSYRGKLLLKLKWSVNNGEENLFEVRD---CGGLPVMLQSNRCHLNK 174
Query: 409 KTEY 412
+ Y
Sbjct: 175 MSPY 178
Score = 45 (20.9 bits), Expect = 5.9e-43, Sum P(3) = 5.9e-43
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 1044 KPVYRHRALDQDGIVAPGEQI 1064
+PV R+ LD++ IV P EQ+
Sbjct: 651 RPV-RYLPLDKEDIVGPFEQV 670
>UNIPROTKB|A6QLS0 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase" species:9913
"Bos taurus" [GO:0017126 "nucleologenesis" evidence=IEA]
[GO:0009790 "embryo development" evidence=IEA] [GO:0009303 "rRNA
transcription" evidence=IEA] [GO:0007566 "embryo implantation"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005736
"DNA-directed RNA polymerase I complex" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007647 InterPro:IPR009674
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04567 Pfam:PF06883
PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005737 GO:GO:0003677
GO:GO:0009790 GO:GO:0009303 GO:GO:0007566 GO:GO:0005736
GO:GO:0003899 eggNOG:COG0085 KO:K03002 OMA:EVFAGVT GO:GO:0032549
Gene3D:2.40.270.10 GeneTree:ENSGT00550000074993 CTD:84172
HOVERGEN:HBG017742 OrthoDB:EOG4H9XJP GO:GO:0017126
Gene3D:2.40.50.150 HOGENOM:HOG000222963 EMBL:DAAA02031075
EMBL:BC148064 IPI:IPI00708666 RefSeq:NP_001093762.1
UniGene:Bt.13051 STRING:A6QLS0 Ensembl:ENSBTAT00000018830
GeneID:282342 KEGG:bta:282342 InParanoid:A6QLS0 NextBio:20806137
Uniprot:A6QLS0
Length = 1135
Score = 405 (147.6 bits), Expect = 1.0e-52, Sum P(4) = 1.0e-52
Identities = 87/189 (46%), Positives = 112/189 (59%)
Query: 1189 YKGSVPSYLEKVLVSSNSEDAFLIKML---LRQTRRPEIGDKFSSRHGQKGVIGLIVEQE 1245
YK ++ + V SN K + +R R P IGDKF+SRHGQKG++ + E
Sbjct: 841 YKSKENCIVDNIKVCSNDTGTGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPVE 900
Query: 1246 DMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAF----GGTKLV 1301
DMPF ESG+ PDI+ NPHG+PSRMT+G LIE +AGK+ + G + T F + L
Sbjct: 901 DMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALE 960
Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
E L GYNY G + YSGI+G LEA I+ G VYYQ+L+HMV DK R+ G R
Sbjct: 961 YFGEMLKAAGYNYYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDK 1020
Query: 1362 LTRQPTGRR 1370
+T QP G R
Sbjct: 1021 VTNQPIGGR 1029
Score = 405 (147.6 bits), Expect = 1.3e-40, Sum P(3) = 1.3e-40
Identities = 100/261 (38%), Positives = 138/261 (52%)
Query: 915 VPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFH 974
+P+ HNQ+PRN YQC MGKQ MG Q+R D +Y L Q P+V +
Sbjct: 674 IPFSDHNQSPRNMYQCQMGKQTMGFPLLTFQDRSDNKLYRLQTPQSPLVRPYMYDYYDMD 733
Query: 975 KLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRIL 1034
P G NA +AV+SY+GYD+EDA+I+NKAS +RGF VY++ L + Q D ++
Sbjct: 734 NYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSERIKQGDDSLV 793
Query: 1035 GPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKEVP 1094
+ D R V + LD DG+ G Q+ P S +++ T E
Sbjct: 794 FGVKPGDPR--VLQK--LDNDGLPFIGAQL-------KYGDPYYSY--LNLNTGE--GFV 838
Query: 1095 VSYKGSVPSYLEKVLVSSNSEDAFLIKML---LRQTRRPEIGDKFSSRHGQKGVIGLIVE 1151
+ YK ++ + V SN K + +R R P IGDKF+SRHGQKG++ +
Sbjct: 839 MYYKSKENCIVDNIKVCSNDTGTGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWP 898
Query: 1152 QEDMPFNESGICPDIIMNPHG 1172
EDMPF ESG+ PDI+ NPHG
Sbjct: 899 VEDMPFTESGMVPDILFNPHG 919
Score = 163 (62.4 bits), Expect = 1.0e-52, Sum P(4) = 1.0e-52
Identities = 43/124 (34%), Positives = 57/124 (45%)
Query: 699 GKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLV 758
GK E + E ++A+ E + GVTTH E+ P +LL V A +
Sbjct: 629 GKEELIGTMEQIFMNVAIFEDEVLAGVTTHQELFPHSLLSVIANF--------------I 674
Query: 759 PYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHK 818
P+ HNQ+PRN YQC MGKQ MG Q+R D +Y L Q P+V +
Sbjct: 675 PFSDHNQSPRNMYQCQMGKQTMGFPLLTFQDRSDNKLYRLQTPQSPLVRPYMYDYYDMDN 734
Query: 819 LPAG 822
P G
Sbjct: 735 YPIG 738
Score = 125 (49.1 bits), Expect = 1.0e-52, Sum P(4) = 1.0e-52
Identities = 37/139 (26%), Positives = 68/139 (48%)
Query: 217 MERQGVTQVLSRLSYISGLGMMTRIN--SQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGE 274
++ G+ V +L++I L ++ + F K R + R L S WG LCP TP+GE
Sbjct: 448 LQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPES-WGFLCPVHTPDGE 506
Query: 275 ACGLVKNLALMTHITTEND-EKNMLKIMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAG 333
CGL+ +L + + T++ ++ ++ N+G+ + S Y V ++G++ G
Sbjct: 507 PCGLMNHLTAICEVVTQSVYTASIPALLCNLGVTPVDGTPHRPYSE--CYPVLLDGVMIG 564
Query: 334 ITCHHKEVCKPEIEESFNY 352
KE+ P I +S +
Sbjct: 565 WA--DKEIA-PGIADSLRH 580
Score = 80 (33.2 bits), Expect = 2.0e-49, Sum P(5) = 2.0e-49
Identities = 22/53 (41%), Positives = 31/53 (58%)
Query: 358 PHECRLRDLTYSAPITVDIEYT-RG-SQRVVRSDLVIGRMPIMLQSSKCVLRN 408
P ECR R TY +T DI ++ G S+ V++ L G +PIM++S C L N
Sbjct: 100 PAECRGRRSTYRGKLTADISWSVNGISKGVIKQFL--GYVPIMVKSKLCNLYN 150
Score = 60 (26.2 bits), Expect = 2.0e-49, Sum P(5) = 2.0e-49
Identities = 18/71 (25%), Positives = 36/71 (50%)
Query: 452 PVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDR-DYYGNKRL 510
P + A +FL + CI I+++ + Y+ ++ R + AL+ + +++ D N+ +
Sbjct: 319 PNEQAAEFLFNQCIC----IHLKSNTEKFYMLCLMTRKLFALAKGECMEENPDSLMNQEV 374
Query: 511 ELAGSLLSLMF 521
G L LMF
Sbjct: 375 LTPGQLF-LMF 384
Score = 47 (21.6 bits), Expect = 9.1e-36, Sum P(4) = 9.1e-36
Identities = 22/71 (30%), Positives = 31/71 (43%)
Query: 954 NLVYAQRPMVESKTIRITNFHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCL 1013
NL Y + V I LP G A A++S+S Y I LI K D F R
Sbjct: 225 NLHYLENGTVMLNFIYRKELFFLPLGF-ALKALVSFSDYQIFQELIKGKE--DDSFFRNS 281
Query: 1014 VYRNSKCVLKQ 1024
V + + V+++
Sbjct: 282 VSQMLRIVMEE 292
Score = 46 (21.3 bits), Expect = 1.0e-52, Sum P(4) = 1.0e-52
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 19 TLKHHPIGTPGPAYIFFLLEGLQAIL 44
+L + + TPG ++ FL E L+A L
Sbjct: 368 SLMNQEVLTPGQLFLMFLKEKLEAWL 393
Score = 43 (20.2 bits), Expect = 2.0e-52, Sum P(4) = 2.0e-52
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 128 LVKPHIDSFDYFINVEIKKLMQA 150
L + H++SF+Y + + +QA
Sbjct: 38 LTRAHVESFNYAVREGLSHAVQA 60
Score = 39 (18.8 bits), Expect = 1.2e-31, Sum P(3) = 1.2e-31
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 325 VFVNGILAGITCHHK 339
+F + +LAG+T H +
Sbjct: 646 IFEDEVLAGVTTHQE 660
Score = 37 (18.1 bits), Expect = 8.6e-52, Sum P(4) = 8.6e-52
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 111 EIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEI-KKLMQANANIYSD 157
E+ +L L FLKEK ++++ I + I KK + N ++ S+
Sbjct: 373 EVLTPGQLFLMFLKEK------LEAWLVSIKIAIDKKSQKTNVSLNSE 414
>UNIPROTKB|F5H643 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0005736 "DNA-directed
RNA polymerase I complex" evidence=IEA] [GO:0007566 "embryo
implantation" evidence=IEA] [GO:0009303 "rRNA transcription"
evidence=IEA] [GO:0009790 "embryo development" evidence=IEA]
[GO:0017126 "nucleologenesis" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007645 InterPro:IPR007647
InterPro:IPR009674 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04565 Pfam:PF04567
Pfam:PF06883 PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005737
GO:GO:0005730 GO:GO:0003677 GO:GO:0009790 GO:GO:0009303
GO:GO:0007566 EMBL:AC012442 GO:GO:0005736 GO:GO:0003899
GO:GO:0032549 Gene3D:2.40.270.10 HGNC:HGNC:20454 GO:GO:0017126
Gene3D:2.40.50.150 IPI:IPI01013053 ProteinModelPortal:F5H643
Ensembl:ENST00000537335 ArrayExpress:F5H643 Bgee:F5H643
Uniprot:F5H643
Length = 924
Score = 404 (147.3 bits), Expect = 4.0e-40, Sum P(3) = 4.0e-40
Identities = 98/261 (37%), Positives = 138/261 (52%)
Query: 915 VPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFH 974
+P+ HNQ+PRN YQC MGKQ MG Q+R D +Y L Q P+V +
Sbjct: 463 IPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMD 522
Query: 975 KLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRIL 1034
P G NA +AV+SY+GYD+EDA+I+NKAS +RGF VY++ L + Q ++
Sbjct: 523 NYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLV 582
Query: 1035 GPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKEVP 1094
+ D R V + LD DG+ G ++ P S +++ T E
Sbjct: 583 FGIKPGDPR--VLQK--LDDDGLPFIGAKL-------QYGDPYYSY--LNLNTGE--SFV 627
Query: 1095 VSYKGSVPSYLEKVLVSSNSEDAFLIKML---LRQTRRPEIGDKFSSRHGQKGVIGLIVE 1151
+ YK ++ + V SN + K + +R R P IGDKF+SRHGQKG++ +
Sbjct: 628 MYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWP 687
Query: 1152 QEDMPFNESGICPDIIMNPHG 1172
EDMPF ESG+ PDI+ NPHG
Sbjct: 688 AEDMPFTESGMVPDILFNPHG 708
Score = 402 (146.6 bits), Expect = 1.6e-52, Sum P(4) = 1.6e-52
Identities = 86/189 (45%), Positives = 113/189 (59%)
Query: 1189 YKGSVPSYLEKVLVSSNSEDAFLIKML---LRQTRRPEIGDKFSSRHGQKGVIGLIVEQE 1245
YK ++ + V SN + K + +R R P IGDKF+SRHGQKG++ + E
Sbjct: 630 YKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAE 689
Query: 1246 DMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAF----GGTKLV 1301
DMPF ESG+ PDI+ NPHG+PSRMT+G LIE +AGK+ + G + T F + L
Sbjct: 690 DMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALE 749
Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
E L GYN+ G + YSGI+G LEA I+ G VYYQ+L+HMV DK R+ G R
Sbjct: 750 YFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDR 809
Query: 1362 LTRQPTGRR 1370
+T QP G R
Sbjct: 810 VTNQPIGGR 818
Score = 166 (63.5 bits), Expect = 1.6e-52, Sum P(4) = 1.6e-52
Identities = 43/124 (34%), Positives = 57/124 (45%)
Query: 699 GKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLV 758
GK E + E ++A+ E + GVTTH E+ P +LL V A +
Sbjct: 418 GKEELIGTMEQIFMNVAIFEDEVFAGVTTHQELFPHSLLSVIANF--------------I 463
Query: 759 PYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHK 818
P+ HNQ+PRN YQC MGKQ MG Q+R D +Y L Q P+V +
Sbjct: 464 PFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDN 523
Query: 819 LPAG 822
P G
Sbjct: 524 YPIG 527
Score = 121 (47.7 bits), Expect = 1.6e-52, Sum P(4) = 1.6e-52
Identities = 33/120 (27%), Positives = 59/120 (49%)
Query: 217 MERQGVTQVLSRLSYISGLGMMTRIN--SQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGE 274
++ G+ V +L++I L ++ + F K R + R L S WG LCP TP+GE
Sbjct: 237 LQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPES-WGFLCPVHTPDGE 295
Query: 275 ACGLVKNLALMTHITTEND-EKNMLKIMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAG 333
CGL+ +L + + T+ ++ ++ N+G+ I S Y V ++G++ G
Sbjct: 296 PCGLMNHLTAVCEVVTQFVYTASIPALLCNLGVTPID--GAPHRSYSECYPVLLDGVMVG 353
Score = 46 (21.3 bits), Expect = 9.5e-33, Sum P(2) = 9.5e-33
Identities = 22/71 (30%), Positives = 31/71 (43%)
Query: 954 NLVYAQRPMVESKTIRITNFHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCL 1013
NL Y + V I LP G A A++S+S Y I LI K D F R
Sbjct: 14 NLHYLENGTVMLNFIYRKELFFLPLGF-ALKALVSFSDYQIFQELIKGKE--DDSFLRNS 70
Query: 1014 VYRNSKCVLKQ 1024
V + + V+++
Sbjct: 71 VSQMLRIVMEE 81
Score = 41 (19.5 bits), Expect = 1.6e-52, Sum P(4) = 1.6e-52
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 19 TLKHHPIGTPGPAYIFFLLEGLQAIL 44
+L + + TPG ++ FL E L+ L
Sbjct: 157 SLVNQEVLTPGQLFLMFLKEKLEGWL 182
>FB|FBgn0003278 [details] [associations]
symbol:RpI135 "RNA polymerase I 135kD subunit" species:7227
"Drosophila melanogaster" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=ISS] [GO:0005736 "DNA-directed RNA polymerase I
complex" evidence=ISS] [GO:0006360 "transcription from RNA
polymerase I promoter" evidence=ISS;NAS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0003677 "DNA binding" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007647 InterPro:IPR009674
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04567 Pfam:PF06883 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0005730 EMBL:AE014134 GO:GO:0022008
GO:GO:0046872 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
eggNOG:COG0085 KO:K03002 OMA:EVFAGVT GO:GO:0032549
Gene3D:2.40.270.10 EMBL:X17298 EMBL:AY075569 PIR:JQ0354
RefSeq:NP_476708.1 UniGene:Dm.30753 ProteinModelPortal:P20028
STRING:P20028 PaxDb:P20028 EnsemblMetazoa:FBtr0078054 GeneID:33210
KEGG:dme:Dmel_CG4033 CTD:33210 FlyBase:FBgn0003278
GeneTree:ENSGT00550000074993 InParanoid:P20028 OrthoDB:EOG4ZKH24
PhylomeDB:P20028 GenomeRNAi:33210 NextBio:782449 Bgee:P20028
GermOnline:CG4033 Uniprot:P20028
Length = 1129
Score = 349 (127.9 bits), Expect = 2.8e-52, Sum P(4) = 2.8e-52
Identities = 78/197 (39%), Positives = 110/197 (55%)
Query: 1179 ITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVI 1238
+ YK V + K + L S + ++ + LR R IGDKF+SR GQKG+
Sbjct: 825 VATYKVVKMDEKEDCIVESIRQLGSFDLSPKKMVAITLRVPRPATIGDKFASRAGQKGIC 884
Query: 1239 GLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGT 1298
ED+PF ESG+ PDI+ NPHG+PSRMT+ +IE +AGK + GN + T F +
Sbjct: 885 SQKYPAEDLPFTESGLIPDIVFNPHGFPSRMTIAMMIETMAGKGAAIHGNVYDATPFRFS 944
Query: 1299 K---LVDVQEELIRHG-YNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHAR 1354
+ +D +++ G YNY G + YSG+ G + A I+ G V+YQ+L+HMV DK R
Sbjct: 945 EENTAIDYFGKMLEAGGYNYYGTERLYSGVDGREMTADIFFGVVHYQRLRHMVFDKWQVR 1004
Query: 1355 SRGPRVVLTRQPT-GRR 1370
S G T QP GR+
Sbjct: 1005 STGAVEARTHQPIKGRK 1021
Score = 215 (80.7 bits), Expect = 2.8e-52, Sum P(4) = 2.8e-52
Identities = 56/155 (36%), Positives = 83/155 (53%)
Query: 914 LVPYPHHNQAPRNTYQCAMGKQAMG--CIGYNQQ--NRIDTLMYNLVYAQRPMVESKTIR 969
L+P P +NQ+PRN YQC MGKQ MG C+ + +Q N++ L RP V I+
Sbjct: 671 LIPMPDYNQSPRNMYQCQMGKQTMGTPCLNWPKQAANKLYRLQTPGTPLFRP-VHYDNIQ 729
Query: 970 ITNFHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQT 1029
+ +F G NA +AV+SY+GYD+EDA+I+NKA+ +RGF +Y+ L
Sbjct: 730 LDDF---AMGTNAIVAVISYTGYDMEDAMIINKAAYERGFAYGSIYKTKFLTL------- 779
Query: 1030 HDRILGPLLEADTRKPVYRHRALDQDGIVAPGEQI 1064
D+ + +H LD DG+ PG ++
Sbjct: 780 -DKKSSYFARHPHMPELIKH--LDTDGLPHPGSKL 811
Score = 156 (60.0 bits), Expect = 1.3e-31, Sum P(4) = 1.3e-31
Identities = 43/121 (35%), Positives = 59/121 (48%)
Query: 1052 LDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKEVPVSYKGSVPSYLEKVLVS 1111
LD DG+ PG ++ + P +AT YK V + K + L S
Sbjct: 799 LDTDGLPHPGSKL-------SYGSPLYCYFDGEVAT--YKVVKMDEKEDCIVESIRQLGS 849
Query: 1112 SNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPH 1171
+ ++ + LR R IGDKF+SR GQKG+ ED+PF ESG+ PDI+ NPH
Sbjct: 850 FDLSPKKMVAITLRVPRPATIGDKFASRAGQKGICSQKYPAEDLPFTESGLIPDIVFNPH 909
Query: 1172 G 1172
G
Sbjct: 910 G 910
Score = 128 (50.1 bits), Expect = 2.8e-52, Sum P(4) = 2.8e-52
Identities = 46/159 (28%), Positives = 74/159 (46%)
Query: 192 MRQ-DTITNALTAAIQTGNWTIRRFK--MERQGVT---QVLSRLSYISGLGMMTRINSQF 245
MRQ + A+ + + TGN R M+ G+ + ++R+ Y+S + R S F
Sbjct: 420 MRQAGGVGRAIESFLATGNIASRTGLGLMQNSGLVIMAENINRMRYMSHFRAIHR-GSYF 478
Query: 246 EKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKI-MYNI 304
T + + R L WG +CP TP+G CGL+ +L L I+ D K + I + I
Sbjct: 479 T-TMRTTEARQLLPDAWGFICPVHTPDGTPCGLLNHLTLTCEISMRPDPKLVKAIPKHLI 537
Query: 305 GIEHIAMFNGEELSSPGVYLVFVNGILAGITCHHKEVCK 343
+ + + N L +Y+VF++G G H E K
Sbjct: 538 DMGMMPLSNRRYLGEK-LYVVFLDGKHLG-HIHQSEAEK 574
Score = 127 (49.8 bits), Expect = 3.6e-43, Sum P(4) = 3.6e-43
Identities = 39/121 (32%), Positives = 57/121 (47%)
Query: 700 KIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVP 759
++EY+ E IA+ + P TTHLE+A + A L+P
Sbjct: 628 RVEYIGTLEQLYMEIAIDAKEMYPDFTTHLELAKTHFMSNLAN--------------LIP 673
Query: 760 YPHHNQAPRNTYQCAMGKQAMG--CIGYNQQ--NRIDTLMYNLVYAQRPMVESKTIRITN 815
P +NQ+PRN YQC MGKQ MG C+ + +Q N++ L RP V I++ +
Sbjct: 674 MPDYNQSPRNMYQCQMGKQTMGTPCLNWPKQAANKLYRLQTPGTPLFRP-VHYDNIQLDD 732
Query: 816 F 816
F
Sbjct: 733 F 733
Score = 71 (30.1 bits), Expect = 2.3e-46, Sum P(4) = 2.3e-46
Identities = 22/74 (29%), Positives = 38/74 (51%)
Query: 341 VCKPEIEESFN--YTRQTTPHECRLRDLTYSAPITVDIEYT-RGSQRV-VRSDLVIGRMP 396
+ KP++ + TR+ P + R ++YS +V + ++ G Q+ + DL G +P
Sbjct: 80 IAKPKVPQDVIDVRTREIYPTDSRQLHVSYSGMCSVRLGWSVNGVQKTPINMDL--GEVP 137
Query: 397 IMLQSSKCVLRNKT 410
IML+S C L T
Sbjct: 138 IMLRSKACNLGQAT 151
Score = 46 (21.3 bits), Expect = 2.8e-52, Sum P(4) = 2.8e-52
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 101 DETSKLKDSPEI---RDKWKLVLSFLKEK--GLVKPHIDSFDYFINV 142
+E ++K P + R ++K + L L PH+DSFD + V
Sbjct: 3 EEMQQMKTIPVLTNSRPEFKQIPKKLSRHLANLGGPHVDSFDEMLTV 49
Score = 39 (18.8 bits), Expect = 6.3e-26, Sum P(2) = 6.3e-26
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 1073 KSMPTISVSAISMATPEYKEVP 1094
+ M TI V ++ + PE+K++P
Sbjct: 6 QQMKTIPV--LTNSRPEFKQIP 25
>POMBASE|SPBP23A10.07 [details] [associations]
symbol:rpa2 "DNA-directed RNA polymerase I complex
subunit Rpa2" species:4896 "Schizosaccharomyces pombe" [GO:0003677
"DNA binding" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=ISO] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=ISO] [GO:0006360 "transcription from
RNA polymerase I promoter" evidence=ISO] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007647 InterPro:IPR009674
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04567 Pfam:PF06883
PROSITE:PS01166 PomBase:SPBP23A10.07 PANTHER:PTHR20856
GO:GO:0046872 GO:GO:0003677 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0006360 GO:GO:0005736 GO:GO:0003899 eggNOG:COG0085 KO:K03002
OMA:EVFAGVT GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000222963 PIR:T50394 RefSeq:NP_595819.2 STRING:Q9P7X8
EnsemblFungi:SPBP23A10.07.1 GeneID:2541280 KEGG:spo:SPBP23A10.07
OrthoDB:EOG4W11N4 NextBio:20802391 Uniprot:Q9P7X8
Length = 1174
Score = 431 (156.8 bits), Expect = 5.7e-52, Sum P(4) = 5.7e-52
Identities = 93/191 (48%), Positives = 122/191 (63%)
Query: 1188 SYKGSVPSYLEKVLVSSNS---EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQ 1244
+Y G+ P ++++V + N + I + LR TR P IGDKFSSRHGQKG+
Sbjct: 859 TYHGTEPGFVDEVRLLGNDVGDSECQQIHVKLRITRSPIIGDKFSSRHGQKGICSQKWPT 918
Query: 1245 EDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTK---LV 1301
DMPF ESG+ PDII+NPH +PSRMT+G IE LAGKAG G ++ T F ++
Sbjct: 919 VDMPFTESGMQPDIIINPHAFPSRMTIGMFIESLAGKAGACHGLAQDSTPFIYSEQQTAA 978
Query: 1302 DV-QEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRV 1360
D E+L++ GYNY G + YSGITG+ ++A IY G VYYQ+L+HMV DK R+ GP
Sbjct: 979 DYFGEQLVKAGYNYHGNEPMYSGITGQEMKADIYIGVVYYQRLRHMVSDKFQVRTTGPIH 1038
Query: 1361 VLTRQPT-GRR 1370
LTRQP GR+
Sbjct: 1039 NLTRQPVKGRK 1049
Score = 381 (139.2 bits), Expect = 7.3e-37, Sum P(3) = 7.3e-37
Identities = 97/263 (36%), Positives = 136/263 (51%)
Query: 914 LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
+ P+ NQ+PRN YQC MGKQ MG G + R D +Y L Q P+V K
Sbjct: 688 MTPFSDFNQSPRNMYQCQMGKQTMGTPGTALRYRTDNKLYRLQTGQTPVVRPKLHNTYGL 747
Query: 974 HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
P G NA +AV+SY+GYD+EDA+I+NK++ +RGFG VY+ L Q + +
Sbjct: 748 DHYPNGTNAVVAVISYTGYDMEDAMILNKSAHERGFGYGTVYKGESFDLSQKRRRGEPVV 807
Query: 1034 --LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYK 1091
G T + + + LD DG+ G + + P ++ S +
Sbjct: 808 HHFG-FAPGSTPRREWLQK-LDADGLPFIG-------IKLEDGDPIVAYYDESTGQ-NFI 857
Query: 1092 EVPVSYKGSVPSYLEKVLVSSNS---EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
E +Y G+ P ++++V + N + I + LR TR P IGDKFSSRHGQKG+
Sbjct: 858 E---TYHGTEPGFVDEVRLLGNDVGDSECQQIHVKLRITRSPIIGDKFSSRHGQKGICSQ 914
Query: 1149 IVEQEDMPFNESGICPDIIMNPH 1171
DMPF ESG+ PDII+NPH
Sbjct: 915 KWPTVDMPFTESGMQPDIIINPH 937
Score = 139 (54.0 bits), Expect = 5.7e-52, Sum P(4) = 5.7e-52
Identities = 40/124 (32%), Positives = 54/124 (43%)
Query: 699 GKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLV 758
G+++ L E IA I P V+TH+E +P +L + A +
Sbjct: 644 GELDMLGPFEQVYMDIACFPKEIVPKVSTHVEYSPTNVLSIVAN--------------MT 689
Query: 759 PYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHK 818
P+ NQ+PRN YQC MGKQ MG G + R D +Y L Q P+V K
Sbjct: 690 PFSDFNQSPRNMYQCQMGKQTMGTPGTALRYRTDNKLYRLQTGQTPVVRPKLHNTYGLDH 749
Query: 819 LPAG 822
P G
Sbjct: 750 YPNG 753
Score = 113 (44.8 bits), Expect = 5.7e-52, Sum P(4) = 5.7e-52
Identities = 43/182 (23%), Positives = 81/182 (44%)
Query: 205 IQTGNWTIRRFKMERQ---GVTQVLSRLSYISGLGMMTRIN-SQFEKTRKVSGPRSLQGS 260
+ TGN + ++ Q G T V +L++ L ++ F K + R L
Sbjct: 441 LSTGN-LVSNTGLDLQQATGYTVVAEKLNFYRFLSHFRMVHRGAFFAELKTTTVRKLLPE 499
Query: 261 QWGMLCPSDTPEGEACGLVKNLALMTHITTE-NDEKNMLKIMYNIGIEHIAMFNGEELSS 319
WG +CP TP+G CGL+ +LA I T +D + ++ ++G++ ++ E
Sbjct: 500 AWGFMCPVHTPDGSPCGLLNHLARKCEIVTHPSDVSQIPSLLLSLGVDPPSVVGHES--- 556
Query: 320 PGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYT 379
G V ++G + G C +K + K + + + + +LR+ T + P V ++
Sbjct: 557 -GWGCVQLDGKIVG-WCTYK-LAK-HVADVLRLMK--IEYAVKLRNGTATEPAKVPLDLE 610
Query: 380 RG 381
G
Sbjct: 611 IG 612
Score = 72 (30.4 bits), Expect = 1.0e-47, Sum P(4) = 1.0e-47
Identities = 20/71 (28%), Positives = 39/71 (54%)
Query: 340 EVCKPEIE--ESFNYTRQTTPHECRLRDLTYSAPITVDIEYT-RGSQRVVRSDL-VIGRM 395
++ KP + E + R+ P E R R TY + + + ++ G R +S++ +G +
Sbjct: 83 QIAKPMLSSRERSSINRKVYPAEARERLTTYKSRLVLKFSWSVNGGPR--QSEMREVGMI 140
Query: 396 PIMLQSSKCVL 406
PIM++S++C L
Sbjct: 141 PIMVRSNRCHL 151
Score = 48 (22.0 bits), Expect = 5.7e-52, Sum P(4) = 5.7e-52
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 121 SFLKEKGLVKPHIDSFDYFIN 141
SF + VKPH+DSF+ N
Sbjct: 21 SFPDLQKAVKPHVDSFNALTN 41
>UNIPROTKB|Q9H9Y6 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase I subunit RPA2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=IEA] [GO:0007566 "embryo
implantation" evidence=IEA] [GO:0009303 "rRNA transcription"
evidence=IEA] [GO:0009790 "embryo development" evidence=IEA]
[GO:0017126 "nucleologenesis" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006360 "transcription from RNA polymerase I promoter"
evidence=TAS] [GO:0006361 "transcription initiation from RNA
polymerase I promoter" evidence=TAS] [GO:0006362 "transcription
elongation from RNA polymerase I promoter" evidence=TAS]
[GO:0006363 "termination of RNA polymerase I transcription"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] Reactome:REACT_71 InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007647
InterPro:IPR009674 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04567 Pfam:PF06883 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0046872
GO:GO:0003677 GO:GO:0009790 GO:GO:0009303 GO:GO:0007566
Reactome:REACT_1788 GO:GO:0006363 GO:GO:0006362 GO:GO:0006361
EMBL:AC012442 GO:GO:0005736 GO:GO:0003899 eggNOG:COG0085 KO:K03002
GO:GO:0032549 Gene3D:2.40.270.10 EMBL:AK022533 EMBL:AK022890
EMBL:AK128044 IPI:IPI00026445 IPI:IPI01010348 RefSeq:NP_001131076.1
RefSeq:NP_061887.2 UniGene:Hs.741552 ProteinModelPortal:Q9H9Y6
SMR:Q9H9Y6 DIP:DIP-27538N IntAct:Q9H9Y6 MINT:MINT-4727878
STRING:Q9H9Y6 PhosphoSite:Q9H9Y6 DMDM:92090637 SWISS-2DPAGE:Q9H9Y6
PaxDb:Q9H9Y6 PRIDE:Q9H9Y6 Ensembl:ENST00000263331
Ensembl:ENST00000417433 GeneID:84172 KEGG:hsa:84172 UCSC:uc002thw.2
UCSC:uc010fkn.2 CTD:84172 GeneCards:GC02P113299 H-InvDB:HIX0002380
HGNC:HGNC:20454 HPA:HPA037528 MIM:602000 neXtProt:NX_Q9H9Y6
PharmGKB:PA130601182 HOVERGEN:HBG017742 InParanoid:Q9H9Y6
OrthoDB:EOG4H9XJP PhylomeDB:Q9H9Y6 GenomeRNAi:84172 NextBio:73536
ArrayExpress:Q9H9Y6 Bgee:Q9H9Y6 CleanEx:HS_POLR1B
Genevestigator:Q9H9Y6 GermOnline:ENSG00000125630 GO:GO:0017126
Gene3D:2.40.50.150 Uniprot:Q9H9Y6
Length = 1135
Score = 404 (147.3 bits), Expect = 1.5e-39, Sum P(3) = 1.5e-39
Identities = 98/261 (37%), Positives = 138/261 (52%)
Query: 915 VPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFH 974
+P+ HNQ+PRN YQC MGKQ MG Q+R D +Y L Q P+V +
Sbjct: 674 IPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMD 733
Query: 975 KLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRIL 1034
P G NA +AV+SY+GYD+EDA+I+NKAS +RGF VY++ L + Q ++
Sbjct: 734 NYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLV 793
Query: 1035 GPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKEVP 1094
+ D R V + LD DG+ G ++ P S +++ T E
Sbjct: 794 FGIKPGDPR--VLQK--LDDDGLPFIGAKL-------QYGDPYYSY--LNLNTGE--SFV 838
Query: 1095 VSYKGSVPSYLEKVLVSSNSEDAFLIKML---LRQTRRPEIGDKFSSRHGQKGVIGLIVE 1151
+ YK ++ + V SN + K + +R R P IGDKF+SRHGQKG++ +
Sbjct: 839 MYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWP 898
Query: 1152 QEDMPFNESGICPDIIMNPHG 1172
EDMPF ESG+ PDI+ NPHG
Sbjct: 899 AEDMPFTESGMVPDILFNPHG 919
Score = 402 (146.6 bits), Expect = 9.0e-52, Sum P(4) = 9.0e-52
Identities = 86/189 (45%), Positives = 113/189 (59%)
Query: 1189 YKGSVPSYLEKVLVSSNSEDAFLIKML---LRQTRRPEIGDKFSSRHGQKGVIGLIVEQE 1245
YK ++ + V SN + K + +R R P IGDKF+SRHGQKG++ + E
Sbjct: 841 YKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAE 900
Query: 1246 DMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAF----GGTKLV 1301
DMPF ESG+ PDI+ NPHG+PSRMT+G LIE +AGK+ + G + T F + L
Sbjct: 901 DMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALE 960
Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
E L GYN+ G + YSGI+G LEA I+ G VYYQ+L+HMV DK R+ G R
Sbjct: 961 YFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDR 1020
Query: 1362 LTRQPTGRR 1370
+T QP G R
Sbjct: 1021 VTNQPIGGR 1029
Score = 166 (63.5 bits), Expect = 9.0e-52, Sum P(4) = 9.0e-52
Identities = 43/124 (34%), Positives = 57/124 (45%)
Query: 699 GKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLV 758
GK E + E ++A+ E + GVTTH E+ P +LL V A +
Sbjct: 629 GKEELIGTMEQIFMNVAIFEDEVFAGVTTHQELFPHSLLSVIANF--------------I 674
Query: 759 PYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHK 818
P+ HNQ+PRN YQC MGKQ MG Q+R D +Y L Q P+V +
Sbjct: 675 PFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDN 734
Query: 819 LPAG 822
P G
Sbjct: 735 YPIG 738
Score = 121 (47.7 bits), Expect = 9.0e-52, Sum P(4) = 9.0e-52
Identities = 33/120 (27%), Positives = 59/120 (49%)
Query: 217 MERQGVTQVLSRLSYISGLGMMTRIN--SQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGE 274
++ G+ V +L++I L ++ + F K R + R L S WG LCP TP+GE
Sbjct: 448 LQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPES-WGFLCPVHTPDGE 506
Query: 275 ACGLVKNLALMTHITTEND-EKNMLKIMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAG 333
CGL+ +L + + T+ ++ ++ N+G+ I S Y V ++G++ G
Sbjct: 507 PCGLMNHLTAVCEVVTQFVYTASIPALLCNLGVTPID--GAPHRSYSECYPVLLDGVMVG 564
Score = 85 (35.0 bits), Expect = 4.8e-48, Sum P(4) = 4.8e-48
Identities = 22/53 (41%), Positives = 31/53 (58%)
Query: 358 PHECRLRDLTYSAPITVDIEYT-RG-SQRVVRSDLVIGRMPIMLQSSKCVLRN 408
P ECR R TY +T DI + G S+ +++ L G +PIM++S C LRN
Sbjct: 100 PAECRGRRSTYRGKLTADINWAVNGISKGIIKQFL--GYVPIMVKSKLCNLRN 150
Score = 46 (21.3 bits), Expect = 1.2e-35, Sum P(4) = 1.2e-35
Identities = 22/71 (30%), Positives = 31/71 (43%)
Query: 954 NLVYAQRPMVESKTIRITNFHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCL 1013
NL Y + V I LP G A A++S+S Y I LI K D F R
Sbjct: 225 NLHYLENGTVMLNFIYRKELFFLPLGF-ALKALVSFSDYQIFQELIKGKE--DDSFLRNS 281
Query: 1014 VYRNSKCVLKQ 1024
V + + V+++
Sbjct: 282 VSQMLRIVMEE 292
Score = 41 (19.5 bits), Expect = 9.0e-52, Sum P(4) = 9.0e-52
Identities = 7/23 (30%), Positives = 15/23 (65%)
Query: 128 LVKPHIDSFDYFINVEIKKLMQA 150
L + H++SF+Y ++ + +QA
Sbjct: 38 LTRAHVESFNYAVHEGLGLAVQA 60
Score = 41 (19.5 bits), Expect = 9.0e-52, Sum P(4) = 9.0e-52
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 19 TLKHHPIGTPGPAYIFFLLEGLQAIL 44
+L + + TPG ++ FL E L+ L
Sbjct: 368 SLVNQEVLTPGQLFLMFLKEKLEGWL 393
>UNIPROTKB|F5GZX4 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007647 InterPro:IPR009674 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04567 Pfam:PF06883 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0005737 GO:GO:0005730 GO:GO:0003677
GO:GO:0006351 EMBL:AC012442 GO:GO:0003899 OMA:EVFAGVT GO:GO:0032549
Gene3D:2.40.270.10 HGNC:HGNC:20454 Gene3D:2.40.50.150
IPI:IPI00418797 Ensembl:ENST00000541869 ArrayExpress:F5GZX4
Bgee:F5GZX4 Uniprot:F5GZX4
Length = 1173
Score = 404 (147.3 bits), Expect = 1.8e-39, Sum P(3) = 1.8e-39
Identities = 98/261 (37%), Positives = 138/261 (52%)
Query: 915 VPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFH 974
+P+ HNQ+PRN YQC MGKQ MG Q+R D +Y L Q P+V +
Sbjct: 712 IPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMD 771
Query: 975 KLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRIL 1034
P G NA +AV+SY+GYD+EDA+I+NKAS +RGF VY++ L + Q ++
Sbjct: 772 NYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLV 831
Query: 1035 GPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKEVP 1094
+ D R V + LD DG+ G ++ P S +++ T E
Sbjct: 832 FGIKPGDPR--VLQK--LDDDGLPFIGAKL-------QYGDPYYSY--LNLNTGE--SFV 876
Query: 1095 VSYKGSVPSYLEKVLVSSNSEDAFLIKML---LRQTRRPEIGDKFSSRHGQKGVIGLIVE 1151
+ YK ++ + V SN + K + +R R P IGDKF+SRHGQKG++ +
Sbjct: 877 MYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWP 936
Query: 1152 QEDMPFNESGICPDIIMNPHG 1172
EDMPF ESG+ PDI+ NPHG
Sbjct: 937 AEDMPFTESGMVPDILFNPHG 957
Score = 402 (146.6 bits), Expect = 1.1e-51, Sum P(4) = 1.1e-51
Identities = 86/189 (45%), Positives = 113/189 (59%)
Query: 1189 YKGSVPSYLEKVLVSSNSEDAFLIKML---LRQTRRPEIGDKFSSRHGQKGVIGLIVEQE 1245
YK ++ + V SN + K + +R R P IGDKF+SRHGQKG++ + E
Sbjct: 879 YKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAE 938
Query: 1246 DMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAF----GGTKLV 1301
DMPF ESG+ PDI+ NPHG+PSRMT+G LIE +AGK+ + G + T F + L
Sbjct: 939 DMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALE 998
Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
E L GYN+ G + YSGI+G LEA I+ G VYYQ+L+HMV DK R+ G R
Sbjct: 999 YFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDR 1058
Query: 1362 LTRQPTGRR 1370
+T QP G R
Sbjct: 1059 VTNQPIGGR 1067
Score = 166 (63.5 bits), Expect = 1.1e-51, Sum P(4) = 1.1e-51
Identities = 43/124 (34%), Positives = 57/124 (45%)
Query: 699 GKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLV 758
GK E + E ++A+ E + GVTTH E+ P +LL V A +
Sbjct: 667 GKEELIGTMEQIFMNVAIFEDEVFAGVTTHQELFPHSLLSVIANF--------------I 712
Query: 759 PYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHK 818
P+ HNQ+PRN YQC MGKQ MG Q+R D +Y L Q P+V +
Sbjct: 713 PFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDN 772
Query: 819 LPAG 822
P G
Sbjct: 773 YPIG 776
Score = 121 (47.7 bits), Expect = 1.1e-51, Sum P(4) = 1.1e-51
Identities = 33/120 (27%), Positives = 59/120 (49%)
Query: 217 MERQGVTQVLSRLSYISGLGMMTRIN--SQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGE 274
++ G+ V +L++I L ++ + F K R + R L S WG LCP TP+GE
Sbjct: 486 LQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPES-WGFLCPVHTPDGE 544
Query: 275 ACGLVKNLALMTHITTEND-EKNMLKIMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAG 333
CGL+ +L + + T+ ++ ++ N+G+ I S Y V ++G++ G
Sbjct: 545 PCGLMNHLTAVCEVVTQFVYTASIPALLCNLGVTPID--GAPHRSYSECYPVLLDGVMVG 602
Score = 85 (35.0 bits), Expect = 6.2e-48, Sum P(4) = 6.2e-48
Identities = 22/53 (41%), Positives = 31/53 (58%)
Query: 358 PHECRLRDLTYSAPITVDIEYT-RG-SQRVVRSDLVIGRMPIMLQSSKCVLRN 408
P ECR R TY +T DI + G S+ +++ L G +PIM++S C LRN
Sbjct: 138 PAECRGRRSTYRGKLTADINWAVNGISKGIIKQFL--GYVPIMVKSKLCNLRN 188
Score = 46 (21.3 bits), Expect = 1.5e-35, Sum P(4) = 1.5e-35
Identities = 22/71 (30%), Positives = 31/71 (43%)
Query: 954 NLVYAQRPMVESKTIRITNFHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCL 1013
NL Y + V I LP G A A++S+S Y I LI K D F R
Sbjct: 263 NLHYLENGTVMLNFIYRKELFFLPLGF-ALKALVSFSDYQIFQELIKGKE--DDSFLRNS 319
Query: 1014 VYRNSKCVLKQ 1024
V + + V+++
Sbjct: 320 VSQMLRIVMEE 330
Score = 41 (19.5 bits), Expect = 1.1e-51, Sum P(4) = 1.1e-51
Identities = 7/23 (30%), Positives = 15/23 (65%)
Query: 128 LVKPHIDSFDYFINVEIKKLMQA 150
L + H++SF+Y ++ + +QA
Sbjct: 76 LTRAHVESFNYAVHEGLGLAVQA 98
Score = 41 (19.5 bits), Expect = 1.1e-51, Sum P(4) = 1.1e-51
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 19 TLKHHPIGTPGPAYIFFLLEGLQAIL 44
+L + + TPG ++ FL E L+ L
Sbjct: 406 SLVNQEVLTPGQLFLMFLKEKLEGWL 431
>UNIPROTKB|E2REX8 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007647 InterPro:IPR009674
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04567 Pfam:PF06883
PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005634 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 KO:K03002 OMA:EVFAGVT GO:GO:0032549
Gene3D:2.40.270.10 GeneTree:ENSGT00550000074993 Gene3D:2.40.50.150
EMBL:AAEX03010908 RefSeq:XP_003639648.1 Ensembl:ENSCAFT00000011494
GeneID:100856298 KEGG:cfa:100856298 Uniprot:E2REX8
Length = 1135
Score = 402 (146.6 bits), Expect = 1.4e-51, Sum P(4) = 1.4e-51
Identities = 86/189 (45%), Positives = 115/189 (60%)
Query: 1189 YKGSVPSYLEKVLVSSNSEDAFLIKML---LRQTRRPEIGDKFSSRHGQKGVIGLIVEQE 1245
YK ++ + V SN K + +R R P IGDKF+SRHGQKG++ + E
Sbjct: 841 YKSKENCIVDNIKVCSNDTGNGRFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPVE 900
Query: 1246 DMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQE 1305
DMPF ESG+ PDI+ NPHG+PSRMT+G LIE +AGK+ + G + T F ++ E
Sbjct: 901 DMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFTFSEENSALE 960
Query: 1306 ---ELIRH-GYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
EL++ GYN+ G + YSGI+G LEA I+ G VYYQ+L+HMV DK R+ G R
Sbjct: 961 YFGELLKAAGYNFYGTERLYSGISGIELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDK 1020
Query: 1362 LTRQPTGRR 1370
+T QP G R
Sbjct: 1021 VTNQPIGGR 1029
Score = 398 (145.2 bits), Expect = 5.3e-39, Sum P(3) = 5.3e-39
Identities = 98/261 (37%), Positives = 136/261 (52%)
Query: 915 VPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFH 974
+P+ HNQ+PRN YQC MGKQ MG Q R D +Y L Q P+V +
Sbjct: 674 IPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQARSDNKLYRLQTPQSPLVRPYMYDYYDMD 733
Query: 975 KLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRIL 1034
P G NA +AV+SY+GYD+EDA+I+NKAS +RGF VY++ L + Q D ++
Sbjct: 734 NYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDDSLV 793
Query: 1035 GPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKEVP 1094
+ D R + + LD DG+ G ++ P S +++ T E
Sbjct: 794 FGVKPGDPR--ILQK--LDDDGLPFIGARL-------QYGDPYYSY--LNLNTGE--SFV 838
Query: 1095 VSYKGSVPSYLEKVLVSSNSEDAFLIKML---LRQTRRPEIGDKFSSRHGQKGVIGLIVE 1151
YK ++ + V SN K + +R R P IGDKF+SRHGQKG++ +
Sbjct: 839 TYYKSKENCIVDNIKVCSNDTGNGRFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWP 898
Query: 1152 QEDMPFNESGICPDIIMNPHG 1172
EDMPF ESG+ PDI+ NPHG
Sbjct: 899 VEDMPFTESGMVPDILFNPHG 919
Score = 163 (62.4 bits), Expect = 1.4e-51, Sum P(4) = 1.4e-51
Identities = 44/124 (35%), Positives = 56/124 (45%)
Query: 699 GKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLV 758
GK E + E +IA+ E + GVTTH E+ P +LL V A +
Sbjct: 629 GKEELIGTMEQIFMNIAIFEDEVLAGVTTHQELFPHSLLSVIANF--------------I 674
Query: 759 PYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHK 818
P+ HNQ+PRN YQC MGKQ MG Q R D +Y L Q P+V +
Sbjct: 675 PFSDHNQSPRNMYQCQMGKQTMGFPLLTYQARSDNKLYRLQTPQSPLVRPYMYDYYDMDN 734
Query: 819 LPAG 822
P G
Sbjct: 735 YPIG 738
Score = 120 (47.3 bits), Expect = 1.4e-51, Sum P(4) = 1.4e-51
Identities = 37/139 (26%), Positives = 67/139 (48%)
Query: 217 MERQGVTQVLSRLSYISGLGMMTRIN--SQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGE 274
++ G+ V +L++I L ++ + F K R + R L S WG LCP TP+GE
Sbjct: 448 LQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPES-WGFLCPVHTPDGE 506
Query: 275 ACGLVKNLALMTHITTEND-EKNMLKIMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAG 333
CGL+ +L + + T+ ++ ++ ++G+ + S Y V ++G++ G
Sbjct: 507 PCGLMNHLTAVCEVVTQCVYTASVPTLLCSLGVTPVDGAPHRPYSE--CYPVLLDGVMVG 564
Query: 334 ITCHHKEVCKPEIEESFNY 352
KE+ P I ES +
Sbjct: 565 WV--DKELA-PSIAESLRH 580
Score = 75 (31.5 bits), Expect = 6.7e-47, Sum P(4) = 6.7e-47
Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 358 PHECRLRDLTYSAPITVDIEYT-RG-SQRVVRSDLVIGRMPIMLQSSKCVLRN 408
P ECR R TY +T DI + G S+ +++ L G +PIM++S C L +
Sbjct: 100 PAECRGRRSTYRGKLTADISWAVNGISKGIIKQFL--GYIPIMVKSKLCNLHS 150
Score = 43 (20.2 bits), Expect = 1.4e-51, Sum P(4) = 1.4e-51
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 128 LVKPHIDSFDYFINVEIKKLMQA 150
L + H++SF+Y + + +QA
Sbjct: 38 LTRAHVESFNYAVREGLSHAVQA 60
Score = 43 (20.2 bits), Expect = 1.6e-34, Sum P(4) = 1.6e-34
Identities = 17/49 (34%), Positives = 21/49 (42%)
Query: 954 NLVYAQRPMVESKTIRITNFHKLPAGQNATIAVMSYSGYDIEDALIMNK 1002
NL Y + V I LP G A A++S+S Y I LI K
Sbjct: 225 NLHYLENGTVMLNFIYRKELFFLPLGF-ALKALVSFSDYQIFQELIKGK 272
Score = 40 (19.1 bits), Expect = 3.0e-51, Sum P(4) = 3.0e-51
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 19 TLKHHPIGTPGPAYIFFLLEGLQAIL 44
+L + + TPG ++ FL E +++ L
Sbjct: 368 SLVNQEVLTPGQLFLMFLKEKMESWL 393
Score = 39 (18.8 bits), Expect = 5.0e-31, Sum P(3) = 5.0e-31
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 325 VFVNGILAGITCHHK 339
+F + +LAG+T H +
Sbjct: 646 IFEDEVLAGVTTHQE 660
>ZFIN|ZDB-GENE-040426-1598 [details] [associations]
symbol:polr1b "polymerase (RNA) I polypeptide B"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR009674 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF06883 PROSITE:PS01166
ZFIN:ZDB-GENE-040426-1598 PANTHER:PTHR20856 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 KO:K03002 GO:GO:0032549
Gene3D:2.40.270.10 CTD:84172 HOVERGEN:HBG017742 Gene3D:2.40.50.150
EMBL:BC097040 IPI:IPI00859868 RefSeq:NP_956812.2 UniGene:Dr.117892
STRING:Q4V967 DNASU:325603 GeneID:325603 KEGG:dre:325603
InParanoid:Q4V967 NextBio:20809377 ArrayExpress:Q4V967
Uniprot:Q4V967
Length = 1132
Score = 402 (146.6 bits), Expect = 2.9e-51, Sum P(4) = 2.9e-51
Identities = 86/189 (45%), Positives = 114/189 (60%)
Query: 1189 YKGSVPSYLEKVLVSSNSEDAFLIKMLL---RQTRRPEIGDKFSSRHGQKGVIGLIVEQE 1245
YK ++ + V SN K + R R P IGDKF+SRHGQKG++ + E
Sbjct: 838 YKYQESCVVDNIKVCSNETGTGRFKRICVTSRVPRNPTIGDKFASRHGQKGILSRLWPAE 897
Query: 1246 DMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQE 1305
DMPF ESG+ PDI+ NPHG+PSRMT+G LIE +AGK+ + G + T F ++ E
Sbjct: 898 DMPFTESGMSPDILFNPHGFPSRMTIGMLIESMAGKSASLHGLCHDATPFTFSEENSALE 957
Query: 1306 ---ELIRH-GYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
EL++ GYNY G + YSG++G LEA I+ G VYYQ+L+HMV DK R+ G R
Sbjct: 958 HFGELLKAAGYNYYGTERLYSGLSGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDK 1017
Query: 1362 LTRQPTGRR 1370
+T QP G R
Sbjct: 1018 VTNQPMGGR 1026
Score = 372 (136.0 bits), Expect = 1.4e-36, Sum P(3) = 1.4e-36
Identities = 97/261 (37%), Positives = 134/261 (51%)
Query: 915 VPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFH 974
+P+ HNQ+PRN YQC M KQ MG ++ Q R D +Y L Q P+V +
Sbjct: 672 IPFSDHNQSPRNMYQCQMSKQTMGFPLHSYQYRSDNKLYRLQTPQSPLVRPAMYDHYDVD 731
Query: 975 KLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRIL 1034
P G NA +AV+SY+GYD+EDA+I+NK+S +RGF VY+ L + + D I+
Sbjct: 732 NYPIGTNAIVAVISYTGYDMEDAMIVNKSSWERGFAHGSVYKTEIIDLSEKV-KGDDSIV 790
Query: 1035 GPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKEVP 1094
+ D P + LD DG+ G ++ P IS+ T + V
Sbjct: 791 FGVKPGD---PKVMGK-LDADGLPFIGS-------VLKYGDPFYGY--ISLNTGQ-SHV- 835
Query: 1095 VSYKGSVPSYLEKVLVSSNSEDAFLIKMLL---RQTRRPEIGDKFSSRHGQKGVIGLIVE 1151
YK ++ + V SN K + R R P IGDKF+SRHGQKG++ +
Sbjct: 836 YFYKYQESCVVDNIKVCSNETGTGRFKRICVTSRVPRNPTIGDKFASRHGQKGILSRLWP 895
Query: 1152 QEDMPFNESGICPDIIMNPHG 1172
EDMPF ESG+ PDI+ NPHG
Sbjct: 896 AEDMPFTESGMSPDILFNPHG 916
Score = 156 (60.0 bits), Expect = 2.9e-51, Sum P(4) = 2.9e-51
Identities = 40/108 (37%), Positives = 55/108 (50%)
Query: 699 GKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLV 758
GK E + + E ++ + E I GVTTH E+ P ++L V A F +
Sbjct: 627 GKQELIGIFEQVYLNVGIFEKEIEDGVTTHQELFPHSMLSVVA---------EF-----I 672
Query: 759 PYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMV 806
P+ HNQ+PRN YQC M KQ MG ++ Q R D +Y L Q P+V
Sbjct: 673 PFSDHNQSPRNMYQCQMSKQTMGFPLHSYQYRSDNKLYRLQTPQSPLV 720
Score = 120 (47.3 bits), Expect = 2.9e-51, Sum P(4) = 2.9e-51
Identities = 42/158 (26%), Positives = 70/158 (44%)
Query: 197 ITNALTAAIQTGNWTIRRF--KMERQGVTQVLSRLSYISGLGMMTRIN--SQFEKTRKVS 252
+T A + TGN + ++ G+ V +L++I L ++ + F K R +
Sbjct: 424 LTKAFEYLLATGNLMSKTGLGMLQNSGLCVVADKLNFIRYLSHFRCVHRGAAFAKMRTTT 483
Query: 253 GPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLK-IMYNIGIEHIAM 311
R L WG LCP TP+GE CGL+ ++ I + L ++ ++G+
Sbjct: 484 -VRKLLPESWGFLCPVHTPDGEPCGLMNHMTAHCEIVAPVYPTSTLPGLLCSLGVNAADG 542
Query: 312 FNGEELSSPGVYLVFVNGILAGITCHHKEVCKPEIEES 349
G+ S Y V ++G + G KEV P + ES
Sbjct: 543 NPGQAYSD--CYPVILDGAMIGWV--EKEVA-PSVIES 575
Score = 80 (33.2 bits), Expect = 4.1e-47, Sum P(4) = 4.1e-47
Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 358 PHECRLRDLTYSAPITVDIEYT-RGSQR-VVRSDLVIGRMPIMLQSSKCVL 406
P ECR R TY A + D+ ++ G + +++ L G+MPIM++S C L
Sbjct: 99 PAECRGRRCTYRAKLVADVSWSVNGVPKGIIKQSL--GQMPIMVKSKLCNL 147
Score = 47 (21.6 bits), Expect = 2.9e-51, Sum P(4) = 2.9e-51
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 23 HPIGTPGPAYIFFLLEGLQAIL 44
H + TPG Y+ FL E ++ L
Sbjct: 371 HEVLTPGQLYLMFLKEKMEGWL 392
Score = 47 (21.6 bits), Expect = 2.9e-51, Sum P(4) = 2.9e-51
Identities = 15/51 (29%), Positives = 25/51 (49%)
Query: 106 LKDSPEIRDKWKLVLSFLKEKG------LVKPHIDSFDYFINVEIKKLMQA 150
LK P ++ + KEK LVK HI+SFD + + ++++A
Sbjct: 9 LKTEPSLKHLTEAGFGVPKEKQRVPVQELVKAHIESFDQAVTDGLCRVVEA 59
Score = 38 (18.4 bits), Expect = 2.5e-50, Sum P(4) = 2.5e-50
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 108 DSP---EIRDKWKLVLSFLKEK 126
DSP E+ +L L FLKEK
Sbjct: 366 DSPMFHEVLTPGQLYLMFLKEK 387
>DICTYBASE|DDB_G0293560 [details] [associations]
symbol:rpa2 "RNA polymerase I, second largest
subunit" species:44689 "Dictyostelium discoideum" [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006360 "transcription from RNA polymerase I promoter"
evidence=ISS] [GO:0005736 "DNA-directed RNA polymerase I complex"
evidence=ISS] [GO:0005730 "nucleolus" evidence=IEA;ISS] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR009674 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF06883 PROSITE:PS01166 dictyBase:DDB_G0293560
PANTHER:PTHR20856 GenomeReviews:CM000155_GR GO:GO:0046872
GO:GO:0003677 EMBL:AAFI02000218 GO:GO:0006360 GO:GO:0005736
GO:GO:0003899 RefSeq:XP_629008.1 HSSP:P08518 STRING:Q54BM1
PRIDE:Q54BM1 EnsemblProtists:DDB0216278 GeneID:8629292
KEGG:ddi:DDB_G0293560 eggNOG:COG0085 KO:K03002 OMA:EVFAGVT
ProtClustDB:CLSZ2728683 GO:GO:0032549 Gene3D:2.40.270.10
Uniprot:Q54BM1
Length = 1130
Score = 412 (150.1 bits), Expect = 5.0e-51, Sum P(4) = 5.0e-51
Identities = 89/205 (43%), Positives = 128/205 (62%)
Query: 1178 RITEYKEVPVSYKGSVPSYLE--KVLVSSN--SEDAFLIKML---LRQTRRPEIGDKFSS 1230
R ++ ++V YKG +Y+E +++ N + D I + LR R P IGDKFSS
Sbjct: 826 RPSDGRQVTKDYKGKEEAYIEDVRIIFGPNGATRDPSKINNICVKLRFNRNPVIGDKFSS 885
Query: 1231 RHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYK 1290
RHGQKGV+ + + +MPF ESG+ PD+I+NP+ +PSRMT+G L+E+LAGKAG + G ++
Sbjct: 886 RHGQKGVLSQLWPEINMPFTESGMKPDVIINPNAFPSRMTIGMLVEILAGKAGAIHGKFQ 945
Query: 1291 EGTAF----GGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHM 1346
+ TAF T + E+L + G+N G + YSG TG+ E I+ G YYQ+L+HM
Sbjct: 946 DATAFQFDENNTAIDFFGEQLAKAGFNRFGNEQMYSGTTGKEFECEIFFGVCYYQRLRHM 1005
Query: 1347 VQDKIHARSRGPRVVLTRQPT-GRR 1370
V+DK R+ G LTRQP GR+
Sbjct: 1006 VKDKYQVRALGKVNALTRQPIKGRK 1030
Score = 365 (133.5 bits), Expect = 3.0e-36, Sum P(3) = 3.0e-36
Identities = 107/342 (31%), Positives = 162/342 (47%)
Query: 914 LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
L P+ +NQ+PRN YQC M KQ MG ++ R D +Y + Q+P+V +K
Sbjct: 667 LTPFSDYNQSPRNMYQCQMAKQTMGTPLHSYPFRTDNKLYKVQNVQKPIVHTKNQFKFRC 726
Query: 974 HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR- 1032
+ P G NA IAV+S +GYD+EDA+I+NK++ +RGFG VY+N L Q ++ +
Sbjct: 727 NDYPHGCNAVIAVISNTGYDMEDAMIINKSAYERGFGHGSVYKNEYIDLDQGLSRFEQKK 786
Query: 1033 -ILG-PLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEY 1090
G P D + +D DG+ G L+ P + S +
Sbjct: 787 TFFGRPNTVVDELD-----KFIDTDGLPFVGR-------LIKPGEPYYTYIRPS----DG 830
Query: 1091 KEVPVSYKGSVPSYLE--KVLVSSN--SEDAFLIKML---LRQTRRPEIGDKFSSRHGQK 1143
++V YKG +Y+E +++ N + D I + LR R P IGDKFSSRHGQK
Sbjct: 831 RQVTKDYKGKEEAYIEDVRIIFGPNGATRDPSKINNICVKLRFNRNPVIGDKFSSRHGQK 890
Query: 1144 GVIGLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVS 1203
GV+ + + +MPF ESG+ PD+I+NP+ I E+ G++ +
Sbjct: 891 GVLSQLWPEINMPFTESGMKPDVIINPNAFPSRMTIGMLVEILAGKAGAIHGKFQDATAF 950
Query: 1204 SNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQE 1245
E+ I Q + ++F + G G E E
Sbjct: 951 QFDENNTAIDFFGEQLAKAGF-NRFGNEQMYSGTTGKEFECE 991
Score = 139 (54.0 bits), Expect = 5.0e-51, Sum P(4) = 5.0e-51
Identities = 37/114 (32%), Positives = 54/114 (47%)
Query: 696 LYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSP 755
L G+ E + E IAV + GVTTH+E +P + + A
Sbjct: 620 LTSGQNELIGPQEQLYMEIAVVPHEVIKGVTTHIETSPTAMFSLLAN------------- 666
Query: 756 GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESK 809
L P+ +NQ+PRN YQC M KQ MG ++ R D +Y + Q+P+V +K
Sbjct: 667 -LTPFSDYNQSPRNMYQCQMAKQTMGTPLHSYPFRTDNKLYKVQNVQKPIVHTK 719
Score = 98 (39.6 bits), Expect = 5.0e-51, Sum P(4) = 5.0e-51
Identities = 20/75 (26%), Positives = 35/75 (46%)
Query: 218 ERQGVTQVLSRLSYISGLGMMTRIN-SQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEAC 276
+ G + +L+++ + I+ F T K + R L WG CP TP+G C
Sbjct: 435 QTSGFCVIADKLNFLRFISHFRSIHRGAFFATMKTTAIRKLMPESWGFFCPVHTPDGAPC 494
Query: 277 GLVKNLALMTHITTE 291
GL+ +L+ +T +
Sbjct: 495 GLLNHLSSNCLVTVD 509
Score = 73 (30.8 bits), Expect = 5.0e-51, Sum P(4) = 5.0e-51
Identities = 14/45 (31%), Positives = 29/45 (64%)
Query: 126 KGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLFY-LKYLDI 169
K L++PHIDSFD+F + I +++ + +Y + + Y +++ D+
Sbjct: 6 KSLIQPHIDSFDFFTDHGIDLVLKDSEPLYFEHNSTQYKIRFTDL 50
Score = 45 (20.9 bits), Expect = 1.5e-45, Sum P(4) = 1.5e-45
Identities = 9/32 (28%), Positives = 20/32 (62%)
Query: 375 DIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVL 406
+++Y + + ++ +GR+PIM++S C L
Sbjct: 102 EVDYNK-QEPTHTFEVDLGRLPIMVKSRYCHL 132
Score = 45 (20.9 bits), Expect = 1.5e-45, Sum P(4) = 1.5e-45
Identities = 19/74 (25%), Positives = 31/74 (41%)
Query: 281 NLALMTHITTENDEKNMLKIMYNIGIEHIAMFNG----EELSSPGVYLVFVNGILAGITC 336
N + H+ ND+ N+L +M + AM G + + SP V + G + G+
Sbjct: 313 NQFVFVHLPNYNDKYNLLILMIQ---KLYAMVGGKCGTDNIDSPAFQEVLLAGHIYGMIL 369
Query: 337 HHKEVCKPEIEESF 350
K E +SF
Sbjct: 370 KEKLTEYLESTKSF 383
>TAIR|locus:2095233 [details] [associations]
symbol:NRPD2A "nuclear RNA polymerase D2A" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA;ISS]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0031047
"gene silencing by RNA" evidence=IMP] [GO:0000418 "DNA-directed RNA
polymerase IV complex" evidence=IDA;IPI] [GO:0005720 "nuclear
heterochromatin" evidence=IDA] [GO:0006306 "DNA methylation"
evidence=IMP;IDA] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=IGI;IMP] [GO:0000419 "DNA-directed RNA
polymerase V complex" evidence=IDA;IPI] [GO:0030880 "RNA polymerase
complex" evidence=IPI] [GO:0035194 "posttranscriptional gene
silencing by RNA" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0050776 "regulation of immune response"
evidence=IMP] [GO:0050832 "defense response to fungus"
evidence=IMP] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 PANTHER:PTHR20856 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0050776 GO:GO:0006355 GO:GO:0050832
GO:GO:0046872 GO:GO:0003677 GO:GO:0005720 EMBL:AP000377
GO:GO:0006351 UniGene:At.37653 GO:GO:0030422 GO:GO:0006306
GO:GO:0003899 GO:GO:0000418 GO:GO:0000419 HSSP:P08518
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000222962 EMBL:AY862891 EMBL:AY935711 EMBL:AK176111
IPI:IPI00546801 RefSeq:NP_001189957.1 RefSeq:NP_189020.2
ProteinModelPortal:Q9LK40 SMR:Q9LK40 STRING:Q9LK40 PaxDb:Q9LK40
PRIDE:Q9LK40 EnsemblPlants:AT3G23780.1 EnsemblPlants:AT3G23780.2
GeneID:821960 KEGG:ath:AT3G23780 GeneFarm:4224 TAIR:At3g23780
InParanoid:Q9LK40 KO:K16252 OMA:CRICESA PhylomeDB:Q9LK40
ProtClustDB:CLSN2681572 Genevestigator:Q9LK40 Uniprot:Q9LK40
Length = 1172
Score = 381 (139.2 bits), Expect = 5.1e-51, Sum P(4) = 5.1e-51
Identities = 92/249 (36%), Positives = 136/249 (54%)
Query: 1135 KFSSRHGQKGVIGLIVEQEDMPFNESGICP-DIIMNPHGLKGCDRITEYKEVPVSYKGSV 1193
+F H + G + + E + PF + + DI++ G D + K +G V
Sbjct: 828 QFGKTHSKIGKVDSL-EDDGFPFIGANMSTGDIVIGRCTESGADHSIKLKHTE---RGIV 883
Query: 1194 PSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESG 1253
+KV++SSN E + LRQ R P +GDKFSS HGQKGV+G + EQ++ PF G
Sbjct: 884 ----QKVVLSSNDEGKNFAAVSLRQVRSPCLGDKFSSMHGQKGVLGYLEEQQNFPFTIQG 939
Query: 1254 ICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV------------ 1301
I PDI++NPH +PSR T G+L+E K G+ KEG++ TKL
Sbjct: 940 IVPDIVINPHAFPSRQTPGQLLEAALSK-GIACPIQKEGSSAAYTKLTRHATPFSTPGVT 998
Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
++ E+L R G++ G + Y+G +GE + + I+ GP +YQ+L HM +DK+ R+ GP
Sbjct: 999 EITEQLHRAGFSRWGNERVYNGRSGEMMRSMIFMGPTFYQRLVHMSEDKVKFRNTGPVHP 1058
Query: 1362 LTRQPTGRR 1370
LTRQP R
Sbjct: 1059 LTRQPVADR 1067
Score = 338 (124.0 bits), Expect = 7.8e-41, Sum P(3) = 7.8e-41
Identities = 88/263 (33%), Positives = 135/263 (51%)
Query: 911 SPGLVPYPHHNQAPRNTYQCAMG-KQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIR 969
S +VP+ +H+ R YQ +QA+G N R DTL L Y Q+P+ ++
Sbjct: 700 SCAVVPFANHDHGRRVLYQSQKHCQQAIGFSSTNPNIRCDTLSQQLFYPQKPLFKTLASE 759
Query: 970 ITNFHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQT 1029
L GQNA +AV + GY+ ED+++MNKASL+RG R R+ K + ++
Sbjct: 760 CLKKEVLFNGQNAIVAVNVHLGYNQEDSIVMNKASLERGMFRSEQIRSYKAEVDAKDSEK 819
Query: 1030 HDRILGPLLE-ADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATP 1088
+ + L++ T + + +L+ DG P + +M T + I T
Sbjct: 820 RKK-MDELVQFGKTHSKIGKVDSLEDDGF--P---------FIGANMSTGDI-VIGRCTE 866
Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
+ + K + ++KV++SSN E + LRQ R P +GDKFSS HGQKGV+G
Sbjct: 867 SGADHSIKLKHTERGIVQKVVLSSNDEGKNFAAVSLRQVRSPCLGDKFSSMHGQKGVLGY 926
Query: 1149 IVEQEDMPFNESGICPDIIMNPH 1171
+ EQ++ PF GI PDI++NPH
Sbjct: 927 LEEQQNFPFTIQGIVPDIVINPH 949
Score = 186 (70.5 bits), Expect = 5.1e-51, Sum P(4) = 5.1e-51
Identities = 56/181 (30%), Positives = 92/181 (50%)
Query: 188 IVNHMRQDTITNALTAAIQTGNWTIRRFKMER-QGVTQVLSRLSYISGLGMMTRINSQFE 246
I +++ ITN L+ A TG W+ KMER GV L R + + L + R Q
Sbjct: 439 IEHYLDASVITNGLSRAFSTGAWSHPFRKMERVSGVVANLGRANPLQTLIDLRRTRQQVL 498
Query: 247 KTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGI 306
T KV R S WG +C TP+GE CGLVKN++L+ ++T++ E ++++ ++ G+
Sbjct: 499 YTGKVGDARYPHPSHWGRVCFLSTPDGENCGLVKNMSLLGLVSTQSLE-SVVEKLFACGM 557
Query: 307 EHIAMFNGEELSSP--GVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTT-PHECRL 363
E + ++ +P G + V +NG G+ C E E++ RQ+ P E +
Sbjct: 558 EELM----DDTCTPLFGKHKVLLNGDWVGL-CADSESFVAELKSR---RRQSELPREMEI 609
Query: 364 R 364
+
Sbjct: 610 K 610
Score = 100 (40.3 bits), Expect = 5.1e-51, Sum P(4) = 5.1e-51
Identities = 36/121 (29%), Positives = 54/121 (44%)
Query: 692 FDDFLYEGKIEYLDVNEGNDSHIA--VSESGIRPGVTTHLEIAPFTLLGV-CAGIELLQY 748
FD L G +E + + E D + A + + P + TH E+ LLGV CA
Sbjct: 650 FDHLLDHGILELIGIEEEEDCNTAWGIKQLLKEPKIYTHCELDLSFLLGVSCA------- 702
Query: 749 NKRFHSPGLVPYPHHNQAPRNTYQCAMG-KQAMGCIGYNQQNRIDTLMYNLVYAQRPMVE 807
+VP+ +H+ R YQ +QA+G N R DTL L Y Q+P+ +
Sbjct: 703 --------VVPFANHDHGRRVLYQSQKHCQQAIGFSSTNPNIRCDTLSQQLFYPQKPLFK 754
Query: 808 S 808
+
Sbjct: 755 T 755
Score = 78 (32.5 bits), Expect = 1.6e-41, Sum P(5) = 1.6e-41
Identities = 16/42 (38%), Positives = 27/42 (64%)
Query: 476 KMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGSLL 517
K KA +L M++ ++ + + ++RD + NKR+ELAG LL
Sbjct: 366 KKKARFLGYMVKCLLNSYAGKRKCENRDSFRNKRIELAGELL 407
Score = 60 (26.2 bits), Expect = 1.6e-41, Sum P(5) = 1.6e-41
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 358 PHECRLRDLTYSAPITVDIEYTRGSQRVVRSD 389
P RL+++TYSA I V+++ VV+SD
Sbjct: 118 PWHARLQNMTYSARIKVNVQVEVFKNTVVKSD 149
Score = 58 (25.5 bits), Expect = 5.1e-51, Sum P(4) = 5.1e-51
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 117 KLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIYSDVDPLF 162
K SF + GL+ ++S++YFI ++ + Q+ + V+P F
Sbjct: 37 KAATSFFDKYGLISHQLNSYNYFIEHGLQNVFQSFGEML--VEPSF 80
Score = 50 (22.7 bits), Expect = 1.7e-40, Sum P(5) = 1.7e-40
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 385 VVRSDLVIGRMPIMLQSSKCVLRNK 409
V + D++IG +P+M++S C K
Sbjct: 166 VKKQDILIGSIPVMVKSILCKTSEK 190
Score = 42 (19.8 bits), Expect = 5.2e-45, Sum P(4) = 5.2e-45
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 644 LILFSLNGDGKRGARNSQQYCDCPDGYSS 672
++ F+ + G+R SQ++C G+SS
Sbjct: 703 VVPFANHDHGRRVLYQSQKHCQQAIGFSS 731
Score = 42 (19.8 bits), Expect = 3.9e-36, Sum P(4) = 3.9e-36
Identities = 21/100 (21%), Positives = 42/100 (42%)
Query: 467 HIPVINMRFKMKA-MYLAVMIRRMVLALSDPDMLDDRDYYGNKRLE------LAGSLLSL 519
H + NM + + + + V + + + SD +Y K L+ L GS+ +
Sbjct: 120 HARLQNMTYSARIKVNVQVEVFKNTVVKSDKFKTGQDNYVEKKILDVKKQDILIGSI-PV 178
Query: 520 MFEDVFKRFNSELKETNLSGVVNLVSGWWFELKYGNKIYI 559
M + + + + + KE G G +F +K K++I
Sbjct: 179 MVKSILCKTSEKGKENCKKGDCAFDQGGYFVIKGAEKVFI 218
Score = 39 (18.8 bits), Expect = 2.1e-39, Sum P(5) = 2.1e-39
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 196 TITNALTAAIQTGNWTIRRFKMERQGVTQV 225
+ITN+L A+I + F+ +T V
Sbjct: 306 SITNSLIASIHVADAVCEAFRCGNNALTYV 335
Score = 38 (18.4 bits), Expect = 1.8e-37, Sum P(5) = 1.8e-37
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 430 RTSPLLSCKKLRQKRFQTYKKTPVDDAR 457
R +PL + LR+ R Q V DAR
Sbjct: 480 RANPLQTLIDLRRTRQQVLYTGKVGDAR 507
>UNIPROTKB|F1SUA2 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase" species:9823
"Sus scrofa" [GO:0017126 "nucleologenesis" evidence=IEA]
[GO:0009790 "embryo development" evidence=IEA] [GO:0009303 "rRNA
transcription" evidence=IEA] [GO:0007566 "embryo implantation"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005736
"DNA-directed RNA polymerase I complex" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007647 InterPro:IPR009674
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04567 Pfam:PF06883 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0005737 GO:GO:0003677 GO:GO:0009790
GO:GO:0009303 GO:GO:0007566 GO:GO:0005736 GO:GO:0003899 OMA:EVFAGVT
GO:GO:0032549 Gene3D:2.40.270.10 GeneTree:ENSGT00550000074993
GO:GO:0017126 EMBL:CU856034 Ensembl:ENSSSCT00000008871
Uniprot:F1SUA2
Length = 1172
Score = 406 (148.0 bits), Expect = 8.5e-40, Sum P(3) = 8.5e-40
Identities = 98/261 (37%), Positives = 137/261 (52%)
Query: 915 VPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFH 974
+P+ HNQ+PRN YQC MGKQ MG ++R D +Y L Q P+V +
Sbjct: 711 IPFSDHNQSPRNMYQCQMGKQTMGFPLLTFKDRSDNKLYRLQTPQSPLVRPYMYDYYDMD 770
Query: 975 KLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRIL 1034
P G NA +AV+SY+GYD+EDA+I+NKAS +RGF VY++ L + Q D ++
Sbjct: 771 NYPIGTNAIVAVISYTGYDMEDAMILNKASWERGFAHGSVYKSEFIDLSEKIKQGDDSLV 830
Query: 1035 GPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKEVP 1094
+ D R + LD DG+ G Q+ P S +++ T E
Sbjct: 831 FGVRPGDPRVA----QKLDDDGLPFVGAQL-------QYGDPYYSY--LNLNTGE--SFV 875
Query: 1095 VSYKGSVPSYLEKVLVSSNSEDAFLIKML---LRQTRRPEIGDKFSSRHGQKGVIGLIVE 1151
V YK ++ + V N + K + +R R P IGDKF+SRHGQKG++ +
Sbjct: 876 VYYKSKENCIVDNIKVCGNDTGSGRFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWP 935
Query: 1152 QEDMPFNESGICPDIIMNPHG 1172
EDMPF ESG+ PDI+ NPHG
Sbjct: 936 VEDMPFTESGMVPDILFNPHG 956
Score = 403 (146.9 bits), Expect = 7.5e-51, Sum P(4) = 7.5e-51
Identities = 87/191 (45%), Positives = 113/191 (59%)
Query: 1187 VSYKGSVPSYLEKVLVSSNSEDAFLIKML---LRQTRRPEIGDKFSSRHGQKGVIGLIVE 1243
V YK ++ + V N + K + +R R P IGDKF+SRHGQKG++ +
Sbjct: 876 VYYKSKENCIVDNIKVCGNDTGSGRFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWP 935
Query: 1244 QEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAF----GGTK 1299
EDMPF ESG+ PDI+ NPHG+PSRMT+G LIE +AGK+ + G + T F +
Sbjct: 936 VEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSA 995
Query: 1300 LVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPR 1359
L E L GYNY G + YSGI+G LEA I+ G VYYQ+L+HMV DK R+ G R
Sbjct: 996 LEYFGEMLKAAGYNYYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGAR 1055
Query: 1360 VVLTRQPTGRR 1370
+T QP G R
Sbjct: 1056 DRVTNQPIGGR 1066
Score = 156 (60.0 bits), Expect = 7.5e-51, Sum P(4) = 7.5e-51
Identities = 41/124 (33%), Positives = 57/124 (45%)
Query: 699 GKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLV 758
G+ E + E ++A+ E + GVTTH E+ P +LL V A +
Sbjct: 666 GREELIGTMEQIFMNVAIFEDEVLAGVTTHQELFPHSLLSVIANF--------------I 711
Query: 759 PYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHK 818
P+ HNQ+PRN YQC MGKQ MG ++R D +Y L Q P+V +
Sbjct: 712 PFSDHNQSPRNMYQCQMGKQTMGFPLLTFKDRSDNKLYRLQTPQSPLVRPYMYDYYDMDN 771
Query: 819 LPAG 822
P G
Sbjct: 772 YPIG 775
Score = 118 (46.6 bits), Expect = 7.5e-51, Sum P(4) = 7.5e-51
Identities = 36/139 (25%), Positives = 66/139 (47%)
Query: 217 MERQGVTQVLSRLSYISGLGMMTRIN--SQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGE 274
++ G+ V +L++I L ++ + F K R + R L S WG LCP TP+GE
Sbjct: 485 LQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPES-WGFLCPVHTPDGE 543
Query: 275 ACGLVKNLALMTHITTEND-EKNMLKIMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAG 333
CGL+ +L + T+ ++ ++ ++G+ + S Y V ++G++ G
Sbjct: 544 PCGLMNHLTATCEVVTQFVYTASIPALLCSLGVTPVDSAPHRRYSE--CYPVLLDGVMVG 601
Query: 334 ITCHHKEVCKPEIEESFNY 352
KE+ P I +S +
Sbjct: 602 WA--DKELA-PSIADSLRH 617
Score = 74 (31.1 bits), Expect = 4.4e-46, Sum P(4) = 4.4e-46
Identities = 21/51 (41%), Positives = 29/51 (56%)
Query: 358 PHECRLRDLTYSAPITVDIEYT-RG-SQRVVRSDLVIGRMPIMLQSSKCVL 406
P ECR R TY +T DI + G S+ V++ L G +PIM++S C L
Sbjct: 136 PAECRGRRSTYRGRLTADISWAVNGISKGVIKQFL--GYVPIMVKSKLCNL 184
Score = 46 (21.3 bits), Expect = 1.8e-34, Sum P(5) = 1.8e-34
Identities = 22/71 (30%), Positives = 31/71 (43%)
Query: 954 NLVYAQRPMVESKTIRITNFHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCL 1013
NL Y + V I LP G A A++S+S Y I LI K D F R
Sbjct: 262 NLHYLENGTVMLNFIYRKELFFLPLGF-ALKALVSFSDYQIFQELIKGKE--DDSFLRNS 318
Query: 1014 VYRNSKCVLKQ 1024
V + + V+++
Sbjct: 319 VSQMLRIVMEE 329
Score = 45 (20.9 bits), Expect = 7.5e-51, Sum P(4) = 7.5e-51
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 19 TLKHHPIGTPGPAYIFFLLEGLQAIL 44
+L + + TPG ++ FL E L+A L
Sbjct: 405 SLVNQEVLTPGQLFLMFLKEKLEAWL 430
Score = 43 (20.2 bits), Expect = 1.2e-50, Sum P(4) = 1.2e-50
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 128 LVKPHIDSFDYFINVEIKKLMQA 150
L + H++SF+Y + + +QA
Sbjct: 74 LTRAHVESFNYAVREGLSHAVQA 96
Score = 40 (19.1 bits), Expect = 1.8e-34, Sum P(5) = 1.8e-34
Identities = 19/67 (28%), Positives = 33/67 (49%)
Query: 1058 VAPGEQICER-QVLVNKSMPTISVSAISMATPEYKEVPVSYKGSVPSYLEKVLVSSNSED 1116
+A GE + E LVN+ + T + + + VS K ++ +K VS N+E+
Sbjct: 393 LAKGECMEENPDSLVNQEVLTPGQLFLMFLKEKLEAWLVSIKIAIDKKAQKTSVSLNTEN 452
Query: 1117 AFLIKML 1123
L+K+L
Sbjct: 453 --LMKIL 457
Score = 40 (19.1 bits), Expect = 2.3e-31, Sum P(3) = 2.3e-31
Identities = 10/43 (23%), Positives = 22/43 (51%)
Query: 297 MLKIMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAGITCHHK 339
+++ + N+G+ + E V +F + +LAG+T H +
Sbjct: 656 LVRPVQNLGLGREELIGTMEQIFMNV-AIFEDEVLAGVTTHQE 697
>ASPGD|ASPL0000012082 [details] [associations]
symbol:AN3933 species:162425 "Emericella nidulans"
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR009674 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF06883 PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 EMBL:BN001302 EMBL:AACD01000064
GO:GO:0003899 eggNOG:COG0085 KO:K03002 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 HOGENOM:HOG000222963
OrthoDB:EOG4W11N4 OMA:FNLLIFM RefSeq:XP_661537.1 STRING:Q5B697
EnsemblFungi:CADANIAT00004761 GeneID:2873357 KEGG:ani:AN3933.2
Uniprot:Q5B697
Length = 1231
Score = 415 (151.1 bits), Expect = 9.8e-50, Sum P(4) = 9.8e-50
Identities = 93/203 (45%), Positives = 126/203 (62%)
Query: 1177 DRITEYKEVPVSYKGSVPSYLEKVLV---SSNSEDAFLIKMLLRQTRRPEIGDKFSSRHG 1233
D IT + V YK S +Y++ + + + +E A I + R R+P IGDKFSSRHG
Sbjct: 891 DGITHF----VKYKDSERAYIDSIRIMGSETGTEPAQAISVKYRIPRKPIIGDKFSSRHG 946
Query: 1234 QKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGT 1293
QKGV + DMPF+ESGI PD+I+NPH +PSRMT+ ++IE +AGKAG + G+ ++ T
Sbjct: 947 QKGVCSQLWPAVDMPFSESGIQPDLIINPHAFPSRMTIAQMIESMAGKAGALHGHPQDCT 1006
Query: 1294 AFGGTK---LVDV-QEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQD 1349
F ++ D E+L R GYNY G + YSGITG+ A I+ G V+YQ+L+HMV D
Sbjct: 1007 PFQFSEEYTATDYFGEQLRRAGYNYYGNEPLYSGITGKEFAADIFIGVVHYQRLRHMVND 1066
Query: 1350 KIHARSRGPRVVLTRQPTGRRWK 1372
K R+ GP LT QP R K
Sbjct: 1067 KFQVRTTGPVNNLTGQPVKGRAK 1089
Score = 405 (147.6 bits), Expect = 4.7e-39, Sum P(3) = 4.7e-39
Identities = 106/319 (33%), Positives = 157/319 (49%)
Query: 914 LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
+ P+ +NQ+PRN YQC M KQ MG G R D +Y L Q P+V
Sbjct: 712 MTPFSDYNQSPRNMYQCQMSKQTMGTPGTAIDYRTDNKLYRLQTGQTPIVRPPLYNAYGL 771
Query: 974 HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYR------NSKCVLKQYPN 1027
P G NA +A++SY+GYD++DA+I+NK+S +RGFG VY+ + K +
Sbjct: 772 DNFPNGTNAVVAIISYTGYDMDDAMIINKSSHERGFGYGTVYKTKVHSLDEKDSRRTKSK 831
Query: 1028 QTHDRILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT 1087
Q ++ G ++ R +R LD+DG G +I E ++ + T+ A S +
Sbjct: 832 QAVQKLFGFAPGSEIRAE-WR-ATLDEDGFPHIGAEIKEGSIVA--AYHTVRYDATSDSY 887
Query: 1088 PEYKEVP--VSYKGSVPSYLEKVLV---SSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQ 1142
+ V YK S +Y++ + + + +E A I + R R+P IGDKFSSRHGQ
Sbjct: 888 INVDGITHFVKYKDSERAYIDSIRIMGSETGTEPAQAISVKYRIPRKPIIGDKFSSRHGQ 947
Query: 1143 KGVIGLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLV 1202
KGV + DMPF+ESGI PD+I+NPH I + E G++ + +
Sbjct: 948 KGVCSQLWPAVDMPFSESGIQPDLIINPHAFPSRMTIAQMIESMAGKAGALHGHPQDCTP 1007
Query: 1203 SSNSEDAFLIKMLLRQTRR 1221
SE+ Q RR
Sbjct: 1008 FQFSEEYTATDYFGEQLRR 1026
Score = 139 (54.0 bits), Expect = 9.8e-50, Sum P(4) = 9.8e-50
Identities = 37/123 (30%), Positives = 52/123 (42%)
Query: 700 KIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVP 759
K++Y+ E IA S + G++TH+E P +L + A + P
Sbjct: 669 KLDYVGPFEQPFMEIACLPSDLVKGLSTHIEFTPTNILSIVAN--------------MTP 714
Query: 760 YPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKL 819
+ +NQ+PRN YQC M KQ MG G R D +Y L Q P+V
Sbjct: 715 FSDYNQSPRNMYQCQMSKQTMGTPGTAIDYRTDNKLYRLQTGQTPIVRPPLYNAYGLDNF 774
Query: 820 PAG 822
P G
Sbjct: 775 PNG 777
Score = 115 (45.5 bits), Expect = 9.8e-50, Sum P(4) = 9.8e-50
Identities = 30/119 (25%), Positives = 57/119 (47%)
Query: 195 DTITNALTAAIQTGNWTIRRFKMERQ---GVTQVLSRLSYISGLGMMTRIN-SQFEKTRK 250
+ I A+ + TGN + ++ Q G T + ++++ + I+ F K
Sbjct: 467 ENIGGAMEYFLSTGN-LVSPTGLDLQQTSGYTVMAEKINFYRFISHFRMIHRGSFFAQLK 525
Query: 251 VSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHI-TTENDEKNMLKIMYNIGIEH 308
+ R L WG LCP TP+G CGL+ +LA + T++ D ++ K++ +G+ +
Sbjct: 526 TTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLAHKCLVATSDTDVSHLPKLLVQLGVRN 584
Score = 96 (38.9 bits), Expect = 1.4e-48, Sum P(5) = 1.4e-48
Identities = 27/77 (35%), Positives = 37/77 (48%)
Query: 339 KEVC--KPEIEESFNYT---RQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIG 393
KEV KP I + YT R P ECR R TY + IEY + +G
Sbjct: 101 KEVFLEKPTIPLTNKYTARNRNIYPSECRERHATYRGKLRAKIEYRVNNGDWTEQVRELG 160
Query: 394 RMPIMLQSSKCVLRNKT 410
++PIML++++C L T
Sbjct: 161 QVPIMLRTNRCYLEKAT 177
Score = 52 (23.4 bits), Expect = 1.4e-48, Sum P(5) = 1.4e-48
Identities = 18/77 (23%), Positives = 35/77 (45%)
Query: 451 TPVDDA-RDFLSSTCIAHIPVINMRFKM---KAMYLAVMIRRMVLALSDPDMLDDRDYYG 506
TP ++A +FL + H+ N+ K L MIR++ ++ D+ D
Sbjct: 347 TPNEEAGTEFLRKVVLPHLGNQNVTETQDYDKFKMLMFMIRKLYALVAGDCAPDNPDAVS 406
Query: 507 NKRLELAGSLLSLMFED 523
N+ + L G L ++ ++
Sbjct: 407 NQEILLGGFLYGMLLKE 423
Score = 43 (20.2 bits), Expect = 9.8e-50, Sum P(4) = 9.8e-50
Identities = 6/9 (66%), Positives = 9/9 (100%)
Query: 129 VKPHIDSFD 137
+KPH+DSF+
Sbjct: 40 IKPHVDSFN 48
Score = 38 (18.4 bits), Expect = 9.2e-42, Sum P(4) = 9.2e-42
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 267 PSDTPEGEACGLVKNLALMTHITTEN 292
P+DTP EA ++ H+ +N
Sbjct: 344 PADTPNEEAGTEFLRKVVLPHLGNQN 369
>MGI|MGI:108014 [details] [associations]
symbol:Polr1b "polymerase (RNA) I polypeptide B"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005736 "DNA-directed RNA polymerase I complex"
evidence=ISO;IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0007566 "embryo implantation" evidence=IMP]
[GO:0009303 "rRNA transcription" evidence=ISO;IMP] [GO:0009790
"embryo development" evidence=IMP] [GO:0016740 "transferase
activity" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0017126 "nucleologenesis" evidence=IMP]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] Reactome:REACT_78136
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR009674 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF06883 PROSITE:PS01166 MGI:MGI:108014 PANTHER:PTHR20856
GO:GO:0005737 GO:GO:0005654 GO:GO:0046872 GO:GO:0003677
EMBL:CH466519 GO:GO:0009790 GO:GO:0009303 GO:GO:0007566
GO:GO:0005736 GO:GO:0003899 CleanEx:MM_RPA2 Reactome:REACT_86751
eggNOG:COG0085 KO:K03002 OMA:EVFAGVT GO:GO:0032549
Gene3D:2.40.270.10 GeneTree:ENSGT00550000074993 CTD:84172
HOVERGEN:HBG017742 OrthoDB:EOG4H9XJP GO:GO:0017126
Gene3D:2.40.50.150 EMBL:U58280 EMBL:AK143501 EMBL:AK144616
EMBL:AL833780 EMBL:BX000699 IPI:IPI00112769 PIR:T42723
RefSeq:NP_033112.2 UniGene:Mm.259078 ProteinModelPortal:P70700
STRING:P70700 PhosphoSite:P70700 PaxDb:P70700 PRIDE:P70700
Ensembl:ENSMUST00000103205 GeneID:20017 KEGG:mmu:20017
HOGENOM:HOG000222963 InParanoid:Q3UMX7 NextBio:297521 Bgee:P70700
Genevestigator:P70700 GermOnline:ENSMUSG00000027395 Uniprot:P70700
Length = 1135
Score = 412 (150.1 bits), Expect = 1.2e-38, Sum P(3) = 1.2e-38
Identities = 100/261 (38%), Positives = 138/261 (52%)
Query: 915 VPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFH 974
+P+ HNQ+PRN YQC MGKQ MG QNR D +Y L Q P+V +
Sbjct: 674 IPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQNRSDNKLYRLQTPQSPLVRPCMYDFYDMD 733
Query: 975 KLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRIL 1034
P G NA +AV+SY+GYD+EDA+I+NKAS +RGF VY++ L + Q D ++
Sbjct: 734 NYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKFKQGEDNLV 793
Query: 1035 GPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKEVP 1094
+ D R + LD DG+ G ++ P S +++ T E
Sbjct: 794 FGVKPGDPRVM----QKLDDDGLPFIGAKL-------EYGDPYYSY--LNLNTGE--GFV 838
Query: 1095 VSYKGSVPSYLEKVLVSSNSEDAFLIKML---LRQTRRPEIGDKFSSRHGQKGVIGLIVE 1151
V YK ++ + V SN + K + +R R P IGDKF+SRHGQKG++ +
Sbjct: 839 VYYKSKENCVVDNIKVCSNDMGSGKFKCICITVRIPRNPTIGDKFASRHGQKGILSRLWP 898
Query: 1152 QEDMPFNESGICPDIIMNPHG 1172
EDMPF ESG+ PDI+ NPHG
Sbjct: 899 AEDMPFTESGMMPDILFNPHG 919
Score = 404 (147.3 bits), Expect = 1.3e-49, Sum P(4) = 1.3e-49
Identities = 87/191 (45%), Positives = 114/191 (59%)
Query: 1187 VSYKGSVPSYLEKVLVSSNSEDAFLIKML---LRQTRRPEIGDKFSSRHGQKGVIGLIVE 1243
V YK ++ + V SN + K + +R R P IGDKF+SRHGQKG++ +
Sbjct: 839 VYYKSKENCVVDNIKVCSNDMGSGKFKCICITVRIPRNPTIGDKFASRHGQKGILSRLWP 898
Query: 1244 QEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAF----GGTK 1299
EDMPF ESG+ PDI+ NPHG+PSRMT+G LIE +AGK+ + G + T F +
Sbjct: 899 AEDMPFTESGMMPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSA 958
Query: 1300 LVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPR 1359
L E L GYN+ G + YSGI+G LEA I+ G VYYQ+L+HMV DK R+ G R
Sbjct: 959 LEYFGEMLKAAGYNFYGTERLYSGISGMELEADIFIGVVYYQRLRHMVSDKFQVRTTGAR 1018
Query: 1360 VVLTRQPTGRR 1370
+T QP G R
Sbjct: 1019 DKVTNQPLGGR 1029
Score = 160 (61.4 bits), Expect = 1.3e-49, Sum P(4) = 1.3e-49
Identities = 41/124 (33%), Positives = 57/124 (45%)
Query: 699 GKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLV 758
G+ E + E ++A+ E + G++TH E+ P +LL V A +
Sbjct: 629 GREELIGTMEQLFMNVAIFEDEVFGGISTHQELFPHSLLSVIANF--------------I 674
Query: 759 PYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHK 818
P+ HNQ+PRN YQC MGKQ MG QNR D +Y L Q P+V +
Sbjct: 675 PFSDHNQSPRNMYQCQMGKQTMGFPLLTYQNRSDNKLYRLQTPQSPLVRPCMYDFYDMDN 734
Query: 819 LPAG 822
P G
Sbjct: 735 YPIG 738
Score = 105 (42.0 bits), Expect = 1.3e-49, Sum P(4) = 1.3e-49
Identities = 34/129 (26%), Positives = 61/129 (47%)
Query: 222 VTQVLSRLSYISGLGMMTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKN 281
V L+ L Y+S + R + F K R + R L S WG LCP TP+G CGL+ +
Sbjct: 456 VADKLNFLRYLSHFRCVHR-GAAFAKMRTTTVRRLLPES-WGFLCPVHTPDGAPCGLLNH 513
Query: 282 LALMTHITTEND-EKNMLKIMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAGITCHHKE 340
L + + T+ ++ ++ +G+ + S Y V ++G++ G K+
Sbjct: 514 LTAVCEVVTKFVYTASIPALLCGLGVTPVDTAPCRPYSD--CYPVLLDGVMVGWV--DKD 569
Query: 341 VCKPEIEES 349
+ PE+ ++
Sbjct: 570 LA-PEVADT 577
Score = 75 (31.5 bits), Expect = 2.2e-48, Sum P(5) = 2.2e-48
Identities = 19/52 (36%), Positives = 27/52 (51%)
Query: 358 PHECRLRDLTYSAPITVDIEYT-RGSQRVVRSDLVIGRMPIMLQSSKCVLRN 408
P ECR R TY +T DI + G + + +G +PIM++S C L N
Sbjct: 100 PAECRGRKSTYRGRLTADISWAVNGVPKGIIKQF-LGYVPIMVKSKLCNLYN 150
Score = 62 (26.9 bits), Expect = 2.2e-48, Sum P(5) = 2.2e-48
Identities = 21/71 (29%), Positives = 35/71 (49%)
Query: 452 PVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDR-DYYGNKRL 510
P +A +FL + CI I+++ YL ++ R + AL+ + +DD D N+ +
Sbjct: 319 PNVEAAEFLLNQCIC----IHLQSNTDKFYLLCLMTRKLFALARGECMDDNPDSLVNQEV 374
Query: 511 ELAGSLLSLMF 521
G L LMF
Sbjct: 375 LSPGQLF-LMF 384
Score = 44 (20.5 bits), Expect = 1.6e-34, Sum P(4) = 1.6e-34
Identities = 17/49 (34%), Positives = 21/49 (42%)
Query: 954 NLVYAQRPMVESKTIRITNFHKLPAGQNATIAVMSYSGYDIEDALIMNK 1002
NL Y + V I LP G A A++S+S Y I LI K
Sbjct: 225 NLHYVENGTVMLNFIYRKELFFLPLGF-ALKALVSFSDYQIFQELIKGK 272
Score = 40 (19.1 bits), Expect = 1.3e-49, Sum P(4) = 1.3e-49
Identities = 6/11 (54%), Positives = 9/11 (81%)
Query: 128 LVKPHIDSFDY 138
L + H+DSF+Y
Sbjct: 38 LTRAHVDSFNY 48
>UNIPROTKB|F8W898 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007647
InterPro:IPR009674 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04567
Pfam:PF06883 PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 EMBL:AC012442 GO:GO:0003899
GO:GO:0032549 Gene3D:2.40.270.10 HGNC:HGNC:20454 Gene3D:2.40.50.150
IPI:IPI00916790 ProteinModelPortal:F8W898 SMR:F8W898
Ensembl:ENST00000409894 UCSC:uc010fko.2 ArrayExpress:F8W898
Bgee:F8W898 Uniprot:F8W898
Length = 952
Score = 404 (147.3 bits), Expect = 2.8e-36, Sum P(3) = 2.8e-36
Identities = 98/261 (37%), Positives = 138/261 (52%)
Query: 915 VPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFH 974
+P+ HNQ+PRN YQC MGKQ MG Q+R D +Y L Q P+V +
Sbjct: 491 IPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMD 550
Query: 975 KLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRIL 1034
P G NA +AV+SY+GYD+EDA+I+NKAS +RGF VY++ L + Q ++
Sbjct: 551 NYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLV 610
Query: 1035 GPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKEVP 1094
+ D R V + LD DG+ G ++ P S +++ T E
Sbjct: 611 FGIKPGDPR--VLQK--LDDDGLPFIGAKL-------QYGDPYYSY--LNLNTGE--SFV 655
Query: 1095 VSYKGSVPSYLEKVLVSSNSEDAFLIKML---LRQTRRPEIGDKFSSRHGQKGVIGLIVE 1151
+ YK ++ + V SN + K + +R R P IGDKF+SRHGQKG++ +
Sbjct: 656 MYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWP 715
Query: 1152 QEDMPFNESGICPDIIMNPHG 1172
EDMPF ESG+ PDI+ NPHG
Sbjct: 716 AEDMPFTESGMVPDILFNPHG 736
Score = 402 (146.6 bits), Expect = 1.1e-48, Sum P(4) = 1.1e-48
Identities = 86/189 (45%), Positives = 113/189 (59%)
Query: 1189 YKGSVPSYLEKVLVSSNSEDAFLIKML---LRQTRRPEIGDKFSSRHGQKGVIGLIVEQE 1245
YK ++ + V SN + K + +R R P IGDKF+SRHGQKG++ + E
Sbjct: 658 YKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAE 717
Query: 1246 DMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAF----GGTKLV 1301
DMPF ESG+ PDI+ NPHG+PSRMT+G LIE +AGK+ + G + T F + L
Sbjct: 718 DMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALE 777
Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
E L GYN+ G + YSGI+G LEA I+ G VYYQ+L+HMV DK R+ G R
Sbjct: 778 YFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDR 837
Query: 1362 LTRQPTGRR 1370
+T QP G R
Sbjct: 838 VTNQPIGGR 846
Score = 166 (63.5 bits), Expect = 1.1e-48, Sum P(4) = 1.1e-48
Identities = 43/124 (34%), Positives = 57/124 (45%)
Query: 699 GKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLV 758
GK E + E ++A+ E + GVTTH E+ P +LL V A +
Sbjct: 446 GKEELIGTMEQIFMNVAIFEDEVFAGVTTHQELFPHSLLSVIANF--------------I 491
Query: 759 PYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHK 818
P+ HNQ+PRN YQC MGKQ MG Q+R D +Y L Q P+V +
Sbjct: 492 PFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDN 551
Query: 819 LPAG 822
P G
Sbjct: 552 YPIG 555
Score = 85 (35.0 bits), Expect = 1.1e-48, Sum P(4) = 1.1e-48
Identities = 22/53 (41%), Positives = 31/53 (58%)
Query: 358 PHECRLRDLTYSAPITVDIEYT-RG-SQRVVRSDLVIGRMPIMLQSSKCVLRN 408
P ECR R TY +T DI + G S+ +++ L G +PIM++S C LRN
Sbjct: 100 PAECRGRRSTYRGKLTADINWAVNGISKGIIKQFL--GYVPIMVKSKLCNLRN 150
Score = 46 (21.3 bits), Expect = 2.8e-36, Sum P(4) = 2.8e-36
Identities = 22/71 (30%), Positives = 31/71 (43%)
Query: 954 NLVYAQRPMVESKTIRITNFHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCL 1013
NL Y + V I LP G A A++S+S Y I LI K D F R
Sbjct: 225 NLHYLENGTVMLNFIYRKELFFLPLGF-ALKALVSFSDYQIFQELIKGKE--DDSFLRNS 281
Query: 1014 VYRNSKCVLKQ 1024
V + + V+++
Sbjct: 282 VSQMLRIVMEE 292
Score = 41 (19.5 bits), Expect = 1.1e-48, Sum P(4) = 1.1e-48
Identities = 7/23 (30%), Positives = 15/23 (65%)
Query: 128 LVKPHIDSFDYFINVEIKKLMQA 150
L + H++SF+Y ++ + +QA
Sbjct: 38 LTRAHVESFNYAVHEGLGLAVQA 60
>RGD|620822 [details] [associations]
symbol:Polr1b "polymerase (RNA) I polypeptide B" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] [GO:0005736 "DNA-directed RNA polymerase
I complex" evidence=IEA;ISO;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0007566 "embryo implantation"
evidence=IEA;ISO] [GO:0009303 "rRNA transcription"
evidence=IEA;ISO;IDA] [GO:0009790 "embryo development"
evidence=IEA;ISO] [GO:0017126 "nucleologenesis" evidence=IEA;ISO]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 PROSITE:PS01166 RGD:620822
PANTHER:PTHR20856 GO:GO:0046872 GO:GO:0003677 GO:GO:0009303
GO:GO:0005736 GO:GO:0003899 eggNOG:COG0085 KO:K03002 GO:GO:0032549
Gene3D:2.40.270.10 CTD:84172 HOVERGEN:HBG017742 Gene3D:2.40.50.150
HOGENOM:HOG000222963 EMBL:AF025424 IPI:IPI00231082 PIR:T42368
RefSeq:NP_113961.1 UniGene:Rn.88734 STRING:O54888
PhosphoSite:O54888 PRIDE:O54888 GeneID:83582 KEGG:rno:83582
UCSC:RGD:620822 InParanoid:O54888 NextBio:616115
ArrayExpress:O54888 Genevestigator:O54888
GermOnline:ENSRNOG00000018349 Uniprot:O54888
Length = 1135
Score = 405 (147.6 bits), Expect = 9.5e-48, Sum P(4) = 9.5e-48
Identities = 87/191 (45%), Positives = 114/191 (59%)
Query: 1187 VSYKGSVPSYLEKVLVSSNSEDAFLIKML---LRQTRRPEIGDKFSSRHGQKGVIGLIVE 1243
V YK ++ + V SN + K + +R R P IGDKF+SRHGQKG++ +
Sbjct: 839 VYYKSKENCVVDNIKVCSNDTGSGKFKCVCVTVRVPRNPTIGDKFASRHGQKGILSRLWP 898
Query: 1244 QEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAF----GGTK 1299
EDMPF ESG+ PDI+ NPHG+PSRMT+G LIE +AGK+ + G + T F +
Sbjct: 899 AEDMPFTESGMMPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSA 958
Query: 1300 LVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPR 1359
L E L GYN+ G + YSGI+G LEA I+ G VYYQ+L+HMV DK R+ G R
Sbjct: 959 LEYFGEMLKAAGYNFYGTERLYSGISGMELEADIFIGVVYYQRLRHMVSDKFQVRTTGAR 1018
Query: 1360 VVLTRQPTGRR 1370
+T QP G R
Sbjct: 1019 DKVTNQPIGGR 1029
Score = 398 (145.2 bits), Expect = 1.4e-38, Sum P(3) = 1.4e-38
Identities = 98/261 (37%), Positives = 137/261 (52%)
Query: 915 VPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFH 974
+P+ HNQ+PRN YQC MGKQ MG Q+R D +Y L Q P+V +
Sbjct: 674 IPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPCMYDHYDMD 733
Query: 975 KLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRIL 1034
P G NA +AV+SY+GYD+EDA+I+NKAS +RGF VY++ L + Q D ++
Sbjct: 734 NYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKFKQGDDSLV 793
Query: 1035 GPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKEVP 1094
+ D R + LD DG+ G ++ P +++ T E
Sbjct: 794 FGVKPGDPRVM----QKLDNDGLPFIGAKL-------EFGDPYYGY--LNLNTGE--GFV 838
Query: 1095 VSYKGSVPSYLEKVLVSSNSEDAFLIKML---LRQTRRPEIGDKFSSRHGQKGVIGLIVE 1151
V YK ++ + V SN + K + +R R P IGDKF+SRHGQKG++ +
Sbjct: 839 VYYKSKENCVVDNIKVCSNDTGSGKFKCVCVTVRVPRNPTIGDKFASRHGQKGILSRLWP 898
Query: 1152 QEDMPFNESGICPDIIMNPHG 1172
EDMPF ESG+ PDI+ NPHG
Sbjct: 899 AEDMPFTESGMMPDILFNPHG 919
Score = 127 (49.8 bits), Expect = 9.5e-48, Sum P(4) = 9.5e-48
Identities = 24/49 (48%), Positives = 30/49 (61%)
Query: 758 VPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMV 806
+P+ HNQ+PRN YQC MGKQ MG Q+R D +Y L Q P+V
Sbjct: 674 IPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLV 722
Score = 115 (45.5 bits), Expect = 9.5e-48, Sum P(4) = 9.5e-48
Identities = 36/152 (23%), Positives = 67/152 (44%)
Query: 217 MERQGVTQVLSRLSYISGLGMMTRIN--SQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGE 274
M+ G+ V +L++I L ++ + F K R + R L WG LCP TP+G
Sbjct: 448 MQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTT-VRKLLPESWGFLCPVHTPDGA 506
Query: 275 ACGLVKNLALMTHITTEND-EKNMLKIMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAG 333
CGL+ +L + + T+ ++ ++ +G+ + S Y V ++G++ G
Sbjct: 507 PCGLLNHLTAVCEVVTKFVYTASIPALLCGLGVTPVDAAPCRPYSD--CYPVLLDGVMVG 564
Query: 334 ITCHHKEVCKPEIEESFNYTRQTTPHECRLRD 365
KE+ PE+ ++ + C D
Sbjct: 565 WV--DKELA-PEVADTLRRFKVLRERRCSSLD 593
Score = 76 (31.8 bits), Expect = 1.6e-45, Sum P(5) = 1.6e-45
Identities = 19/52 (36%), Positives = 27/52 (51%)
Query: 358 PHECRLRDLTYSAPITVDIEYT-RGSQRVVRSDLVIGRMPIMLQSSKCVLRN 408
P ECR R TY +T DI + G + + +G +PIM++S C L N
Sbjct: 100 PAECRGRRSTYRGKLTADISWAVNGVPKGIIKQF-LGXVPIMVKSKLCNLYN 150
Score = 61 (26.5 bits), Expect = 1.6e-45, Sum P(5) = 1.6e-45
Identities = 20/71 (28%), Positives = 35/71 (49%)
Query: 452 PVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDR-DYYGNKRL 510
P +A +FL + CI I+++ YL ++ R + AL+ + ++D D N+ +
Sbjct: 319 PNAEAAEFLFNQCIC----IHLKSNTDKFYLLCLMTRKLFALARGECMEDNPDSLVNQEV 374
Query: 511 ELAGSLLSLMF 521
G L LMF
Sbjct: 375 LTPGQLF-LMF 384
Score = 44 (20.5 bits), Expect = 9.5e-48, Sum P(4) = 9.5e-48
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 128 LVKPHIDSFDYFINVEIKKLMQA 150
L + H+DSF+Y + + +QA
Sbjct: 38 LTRAHVDSFNYAVLEGLSHAVQA 60
Score = 44 (20.5 bits), Expect = 3.8e-35, Sum P(4) = 3.8e-35
Identities = 17/49 (34%), Positives = 21/49 (42%)
Query: 954 NLVYAQRPMVESKTIRITNFHKLPAGQNATIAVMSYSGYDIEDALIMNK 1002
NL Y + V I LP G A A++S+S Y I LI K
Sbjct: 225 NLHYVENGTVMLNFIYRKELFFLPLGF-ALKALVSFSDYQIFQELIKGK 272
Score = 38 (18.4 bits), Expect = 4.0e-47, Sum P(4) = 4.0e-47
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 19 TLKHHPIGTPGPAYIFFLLEGLQ 41
+L + + TPG ++ FL E ++
Sbjct: 368 SLVNQEVLTPGQLFLMFLKEKME 390
>UNIPROTKB|O54888 [details] [associations]
symbol:Polr1b "DNA-directed RNA polymerase I subunit RPA2"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 PROSITE:PS01166 RGD:620822
PANTHER:PTHR20856 GO:GO:0046872 GO:GO:0003677 GO:GO:0009303
GO:GO:0005736 GO:GO:0003899 eggNOG:COG0085 KO:K03002 GO:GO:0032549
Gene3D:2.40.270.10 CTD:84172 HOVERGEN:HBG017742 Gene3D:2.40.50.150
HOGENOM:HOG000222963 EMBL:AF025424 IPI:IPI00231082 PIR:T42368
RefSeq:NP_113961.1 UniGene:Rn.88734 STRING:O54888
PhosphoSite:O54888 PRIDE:O54888 GeneID:83582 KEGG:rno:83582
UCSC:RGD:620822 InParanoid:O54888 NextBio:616115
ArrayExpress:O54888 Genevestigator:O54888
GermOnline:ENSRNOG00000018349 Uniprot:O54888
Length = 1135
Score = 405 (147.6 bits), Expect = 9.5e-48, Sum P(4) = 9.5e-48
Identities = 87/191 (45%), Positives = 114/191 (59%)
Query: 1187 VSYKGSVPSYLEKVLVSSNSEDAFLIKML---LRQTRRPEIGDKFSSRHGQKGVIGLIVE 1243
V YK ++ + V SN + K + +R R P IGDKF+SRHGQKG++ +
Sbjct: 839 VYYKSKENCVVDNIKVCSNDTGSGKFKCVCVTVRVPRNPTIGDKFASRHGQKGILSRLWP 898
Query: 1244 QEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAF----GGTK 1299
EDMPF ESG+ PDI+ NPHG+PSRMT+G LIE +AGK+ + G + T F +
Sbjct: 899 AEDMPFTESGMMPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSA 958
Query: 1300 LVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPR 1359
L E L GYN+ G + YSGI+G LEA I+ G VYYQ+L+HMV DK R+ G R
Sbjct: 959 LEYFGEMLKAAGYNFYGTERLYSGISGMELEADIFIGVVYYQRLRHMVSDKFQVRTTGAR 1018
Query: 1360 VVLTRQPTGRR 1370
+T QP G R
Sbjct: 1019 DKVTNQPIGGR 1029
Score = 398 (145.2 bits), Expect = 1.4e-38, Sum P(3) = 1.4e-38
Identities = 98/261 (37%), Positives = 137/261 (52%)
Query: 915 VPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFH 974
+P+ HNQ+PRN YQC MGKQ MG Q+R D +Y L Q P+V +
Sbjct: 674 IPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPCMYDHYDMD 733
Query: 975 KLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRIL 1034
P G NA +AV+SY+GYD+EDA+I+NKAS +RGF VY++ L + Q D ++
Sbjct: 734 NYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKFKQGDDSLV 793
Query: 1035 GPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKEVP 1094
+ D R + LD DG+ G ++ P +++ T E
Sbjct: 794 FGVKPGDPRVM----QKLDNDGLPFIGAKL-------EFGDPYYGY--LNLNTGE--GFV 838
Query: 1095 VSYKGSVPSYLEKVLVSSNSEDAFLIKML---LRQTRRPEIGDKFSSRHGQKGVIGLIVE 1151
V YK ++ + V SN + K + +R R P IGDKF+SRHGQKG++ +
Sbjct: 839 VYYKSKENCVVDNIKVCSNDTGSGKFKCVCVTVRVPRNPTIGDKFASRHGQKGILSRLWP 898
Query: 1152 QEDMPFNESGICPDIIMNPHG 1172
EDMPF ESG+ PDI+ NPHG
Sbjct: 899 AEDMPFTESGMMPDILFNPHG 919
Score = 127 (49.8 bits), Expect = 9.5e-48, Sum P(4) = 9.5e-48
Identities = 24/49 (48%), Positives = 30/49 (61%)
Query: 758 VPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMV 806
+P+ HNQ+PRN YQC MGKQ MG Q+R D +Y L Q P+V
Sbjct: 674 IPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLV 722
Score = 115 (45.5 bits), Expect = 9.5e-48, Sum P(4) = 9.5e-48
Identities = 36/152 (23%), Positives = 67/152 (44%)
Query: 217 MERQGVTQVLSRLSYISGLGMMTRIN--SQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGE 274
M+ G+ V +L++I L ++ + F K R + R L WG LCP TP+G
Sbjct: 448 MQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTT-VRKLLPESWGFLCPVHTPDGA 506
Query: 275 ACGLVKNLALMTHITTEND-EKNMLKIMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAG 333
CGL+ +L + + T+ ++ ++ +G+ + S Y V ++G++ G
Sbjct: 507 PCGLLNHLTAVCEVVTKFVYTASIPALLCGLGVTPVDAAPCRPYSD--CYPVLLDGVMVG 564
Query: 334 ITCHHKEVCKPEIEESFNYTRQTTPHECRLRD 365
KE+ PE+ ++ + C D
Sbjct: 565 WV--DKELA-PEVADTLRRFKVLRERRCSSLD 593
Score = 76 (31.8 bits), Expect = 1.6e-45, Sum P(5) = 1.6e-45
Identities = 19/52 (36%), Positives = 27/52 (51%)
Query: 358 PHECRLRDLTYSAPITVDIEYT-RGSQRVVRSDLVIGRMPIMLQSSKCVLRN 408
P ECR R TY +T DI + G + + +G +PIM++S C L N
Sbjct: 100 PAECRGRRSTYRGKLTADISWAVNGVPKGIIKQF-LGXVPIMVKSKLCNLYN 150
Score = 61 (26.5 bits), Expect = 1.6e-45, Sum P(5) = 1.6e-45
Identities = 20/71 (28%), Positives = 35/71 (49%)
Query: 452 PVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDR-DYYGNKRL 510
P +A +FL + CI I+++ YL ++ R + AL+ + ++D D N+ +
Sbjct: 319 PNAEAAEFLFNQCIC----IHLKSNTDKFYLLCLMTRKLFALARGECMEDNPDSLVNQEV 374
Query: 511 ELAGSLLSLMF 521
G L LMF
Sbjct: 375 LTPGQLF-LMF 384
Score = 44 (20.5 bits), Expect = 9.5e-48, Sum P(4) = 9.5e-48
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 128 LVKPHIDSFDYFINVEIKKLMQA 150
L + H+DSF+Y + + +QA
Sbjct: 38 LTRAHVDSFNYAVLEGLSHAVQA 60
Score = 44 (20.5 bits), Expect = 3.8e-35, Sum P(4) = 3.8e-35
Identities = 17/49 (34%), Positives = 21/49 (42%)
Query: 954 NLVYAQRPMVESKTIRITNFHKLPAGQNATIAVMSYSGYDIEDALIMNK 1002
NL Y + V I LP G A A++S+S Y I LI K
Sbjct: 225 NLHYVENGTVMLNFIYRKELFFLPLGF-ALKALVSFSDYQIFQELIKGK 272
Score = 38 (18.4 bits), Expect = 4.0e-47, Sum P(4) = 4.0e-47
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 19 TLKHHPIGTPGPAYIFFLLEGLQ 41
+L + + TPG ++ FL E ++
Sbjct: 368 SLVNQEVLTPGQLFLMFLKEKME 390
>TAIR|locus:2019272 [details] [associations]
symbol:NRPA2 "nuclear RNA polymerase A2" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR009674 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF06883 PROSITE:PS01166
PANTHER:PTHR20856 EMBL:CP002684 GO:GO:0005829 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 KO:K03002 OMA:EVFAGVT
GO:GO:0032549 Gene3D:2.40.270.10 IPI:IPI00518589 RefSeq:NP_564341.2
UniGene:At.16301 ProteinModelPortal:F4I366 SMR:F4I366 PRIDE:F4I366
EnsemblPlants:AT1G29940.1 GeneID:839872 KEGG:ath:AT1G29940
Uniprot:F4I366
Length = 1178
Score = 355 (130.0 bits), Expect = 1.3e-33, Sum P(3) = 1.3e-33
Identities = 92/261 (35%), Positives = 134/261 (51%)
Query: 914 LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
L P+ HNQ+PRN YQC M KQ M Q R D +Y+L Q P+V +KT +
Sbjct: 691 LTPWSDHNQSPRNMYQCQMAKQTMAYSTQALQFRADQKIYHLQTPQSPVVRTKTYTTYSI 750
Query: 974 HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
+ P G NA +AV++++G+D+EDA+I+NK+S++RG +Y+ L N D
Sbjct: 751 DENPTGTNAIVAVLAHTGFDMEDAMILNKSSVERGMCHGQIYQTENIDLSDQ-NSRFDSG 809
Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISV-SAISMATPEYKE 1092
T K H +D DG+ + G+++ + P S+ ++ T K
Sbjct: 810 -SKSFRRSTNKA--EHFRIDADGLPSVGQKLYPDE-------PYCSIYDEVTNKTRHMKR 859
Query: 1093 VPVSYKGSVPSYLEKVLVSSNSED-AFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVE 1151
KG+ P ++ V V S+ + R R P IGDKFSSRHGQKGV +
Sbjct: 860 -----KGTDPVIVDFVSVDMKSKKHPQRANIRFRHARNPIIGDKFSSRHGQKGVCSQLWP 914
Query: 1152 QEDMPFNE-SGICPDIIMNPH 1171
DMPFN +G+ PD+I+NPH
Sbjct: 915 DIDMPFNGVTGMRPDLIINPH 935
Score = 350 (128.3 bits), Expect = 2.1e-41, Sum P(4) = 2.1e-41
Identities = 95/262 (36%), Positives = 131/262 (50%)
Query: 1126 QTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEV 1185
Q R + G K S R ++ + +P + PD P+ D +T K
Sbjct: 802 QNSRFDSGSK-SFRRSTNKAEHFRIDADGLPSVGQKLYPD---EPY-CSIYDEVTN-KTR 855
Query: 1186 PVSYKGSVPSYLEKVLVSSNSED-AFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQ 1244
+ KG+ P ++ V V S+ + R R P IGDKFSSRHGQKGV +
Sbjct: 856 HMKRKGTDPVIVDFVSVDMKSKKHPQRANIRFRHARNPIIGDKFSSRHGQKGVCSQLWPD 915
Query: 1245 EDMPFNE-SGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAF-GGTKLVD 1302
DMPFN +G+ PD+I+NPH +PSRMT+ L+E +A K G + G + + T F K +
Sbjct: 916 IDMPFNGVTGMRPDLIINPHAFPSRMTIAMLLESIAAKGGSLHGKFVDATPFRDAVKKTN 975
Query: 1303 VQEE-------------LIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQD 1349
+EE L G+N+ G + YSG G L+ I+ GPVYYQ+L+HMV D
Sbjct: 976 GEEESKSSLLVDDLGSMLKEKGFNHYGTETLYSGYLGVELKCEIFMGPVYYQRLRHMVSD 1035
Query: 1350 KIHARSRGPRVVLTRQPT-GRR 1370
K RS G LT QP GR+
Sbjct: 1036 KFQVRSTGQVDQLTHQPIKGRK 1057
Score = 127 (49.8 bits), Expect = 2.1e-41, Sum P(4) = 2.1e-41
Identities = 27/66 (40%), Positives = 35/66 (53%)
Query: 757 LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 816
L P+ HNQ+PRN YQC M KQ M Q R D +Y+L Q P+V +KT +
Sbjct: 691 LTPWSDHNQSPRNMYQCQMAKQTMAYSTQALQFRADQKIYHLQTPQSPVVRTKTYTTYSI 750
Query: 817 HKLPAG 822
+ P G
Sbjct: 751 DENPTG 756
Score = 114 (45.2 bits), Expect = 2.1e-41, Sum P(4) = 2.1e-41
Identities = 25/84 (29%), Positives = 42/84 (50%)
Query: 218 ERQGVTQVLSRLSYISGLGMMTRIN--SQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEA 275
+R G T RL+++ L ++ + F R + R L WG LCP TP+G
Sbjct: 451 QRAGYTVQAERLNFLRFLSFFRAVHRGASFAGLRTTT-VRKLLPESWGFLCPVHTPDGTP 509
Query: 276 CGLVKNLALMTHITTENDEKNMLK 299
CGL+ ++ + IT++ D K ++
Sbjct: 510 CGLLNHMTRTSRITSQFDSKGNIR 533
Score = 86 (35.3 bits), Expect = 1.7e-38, Sum P(4) = 1.7e-38
Identities = 23/70 (32%), Positives = 33/70 (47%)
Query: 341 VCKPEIEESFNYTRQTTP---HECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPI 397
V P+ +ESF T + P ECR ++Y+ D+ + VVR G+ PI
Sbjct: 68 VFAPQ-KESFKSTSRKEPLLPFECRQAKISYTGTFMADVCFKYNDGVVVRDKFDFGQFPI 126
Query: 398 MLQSSKCVLR 407
ML S C L+
Sbjct: 127 MLMSKLCSLK 136
Score = 43 (20.2 bits), Expect = 2.1e-41, Sum P(4) = 2.1e-41
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 122 FLKEKGLVKPHIDSFDY 138
F + LV HI+SFDY
Sbjct: 16 FKELHNLVTHHIESFDY 32
>UNIPROTKB|I3LR52 [details] [associations]
symbol:I3LR52 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR007120
InterPro:IPR015712 Pfam:PF00562 PANTHER:PTHR20856 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10
GeneTree:ENSGT00690000102214 EMBL:CU683880
Ensembl:ENSSSCT00000028377 Uniprot:I3LR52
Length = 80
Score = 328 (120.5 bits), Expect = 3.5e-28, P = 3.5e-28
Identities = 60/80 (75%), Positives = 70/80 (87%)
Query: 1247 MPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEE 1306
MPF +SGICPDIIMNPHG+PSRMTVGKLIELLAGKAG+++G + GTAFGG+K+ DV E+
Sbjct: 1 MPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSKVKDVCED 60
Query: 1307 LIRHGYNYQGKDIFYSGITG 1326
L+RHGYNY GKD SGITG
Sbjct: 61 LVRHGYNYLGKDYVTSGITG 80
>UNIPROTKB|F1NRJ5 [details] [associations]
symbol:F1NRJ5 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR009674 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF06883
PANTHER:PTHR20856 GO:GO:0005634 GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10
GeneTree:ENSGT00550000074993 EMBL:AADN02041199 IPI:IPI00820874
Ensembl:ENSGALT00000039028 Uniprot:F1NRJ5
Length = 760
Score = 262 (97.3 bits), Expect = 1.3e-25, Sum P(2) = 1.3e-25
Identities = 57/144 (39%), Positives = 81/144 (56%)
Query: 914 LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNF 973
L+P+ HNQ+PRN YQC MGKQ MG YN ++R D +Y L Q P+V +
Sbjct: 563 LIPFSDHNQSPRNMYQCQMGKQTMGFPVYNYKDRSDNKLYLLHTPQSPLVRPRMYDYYGM 622
Query: 974 HKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
P G N+ +AV+SYSGYD+EDA+I+NK+S +RGF V + L N+ D +
Sbjct: 623 DSYPVGTNSVVAVISYSGYDMEDAMIVNKSSWERGFAYGSVIKMESIDLSLKANRGGDNL 682
Query: 1034 LGPLLEADTRKPVYRHRALDQDGI 1057
+ + D P + + LD DG+
Sbjct: 683 VFGIRPGD---PNVKEK-LDADGL 702
Score = 192 (72.6 bits), Expect = 4.9e-18, Sum P(2) = 4.9e-18
Identities = 47/129 (36%), Positives = 65/129 (50%)
Query: 694 DFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTTHLEIAPFTLLGVCAGIELLQYNKRFH 753
+ LY G+ E++ E ++A ES + PGVTTH E+ P ++L V A
Sbjct: 515 NLLY-GRKEWIGTLEQVFMNVATMESDVMPGVTTHQELFPHSILSVVAN----------- 562
Query: 754 SPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRI 813
L+P+ HNQ+PRN YQC MGKQ MG YN ++R D +Y L Q P+V +
Sbjct: 563 ---LIPFSDHNQSPRNMYQCQMGKQTMGFPVYNYKDRSDNKLYLLHTPQSPLVRPRMYDY 619
Query: 814 TNFHKLPAG 822
P G
Sbjct: 620 YGMDSYPVG 628
Score = 120 (47.3 bits), Expect = 1.3e-25, Sum P(2) = 1.3e-25
Identities = 32/105 (30%), Positives = 52/105 (49%)
Query: 191 HMRQDTITNALTAAIQTGNWTIRRF--KMERQGVTQVLSRLSYISGLGMMTRIN--SQFE 246
+M D +T + + TGN + ++ G+ V +L+++ L I+ S F
Sbjct: 309 NMTTD-VTKSFEYLLATGNLRSKTGLGMLQDSGLCVVGDKLNFVRYLSHFRCIHRGSAFA 367
Query: 247 KTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTE 291
+ R + R L WG LCP DTP+GE CGL+ ++ + I TE
Sbjct: 368 QMRTTT-VRKLLPESWGFLCPVDTPDGEPCGLMNHMTAVCEIVTE 411
Score = 65 (27.9 bits), Expect = 2.9e-19, Sum P(3) = 2.9e-19
Identities = 20/69 (28%), Positives = 35/69 (50%)
Query: 454 DDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDR-DYYGNKRLEL 512
+ A DF+ + CI I++ + + YL M+ R + A + + ++D D N+ +
Sbjct: 209 EQAADFIFNKCIC----IHLTDRTEKFYLLCMMTRKLCAFAKGECMEDNPDSLMNQEVLT 264
Query: 513 AGSLLSLMF 521
AG L LMF
Sbjct: 265 AGQLF-LMF 272
Score = 41 (19.5 bits), Expect = 2.9e-19, Sum P(3) = 2.9e-19
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 392 IGRMPIMLQSSKCVLRN 408
+G +PIM++S C L N
Sbjct: 22 VGFVPIMVKSKLCNLYN 38
Score = 38 (18.4 bits), Expect = 5.9e-19, Sum P(3) = 5.9e-19
Identities = 9/36 (25%), Positives = 19/36 (52%)
Query: 295 KNMLKIMYNIGIEHIAMFNGEELSSPGVYLVFVNGI 330
K+ L +YN+ + + + EE G +++ NG+
Sbjct: 30 KSKLCNLYNLSPQELIQHHEEEEEMGGYFII--NGL 63
Score = 38 (18.4 bits), Expect = 4.8e-17, Sum P(2) = 4.8e-17
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 84 WLGTVKAVHGTYLTMVTD 101
W+GT++ V TM +D
Sbjct: 523 WIGTLEQVFMNVATMESD 540
>TIGR_CMR|CHY_2318 [details] [associations]
symbol:CHY_2318 "DNA-directed RNA polymerase, beta
subunit" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0006351 GO:GO:0003899
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03043 ProtClustDB:PRK00405 Gene3D:2.30.150.10
PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013 HOGENOM:HOG000218611
OMA:FMTWEGY RefSeq:YP_361127.1 ProteinModelPortal:Q3A9Q7
STRING:Q3A9Q7 PRIDE:Q3A9Q7 GeneID:3728817 KEGG:chy:CHY_2318
PATRIC:21277705 BioCyc:CHYD246194:GJCN-2317-MONOMER Uniprot:Q3A9Q7
Length = 1132
Score = 310 (114.2 bits), Expect = 2.4e-25, Sum P(4) = 2.4e-25
Identities = 100/346 (28%), Positives = 162/346 (46%)
Query: 1043 RKPVYRH-RALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKE-VPVSYKGS 1100
+KP+ R +++D I+A G ++ + K+ + V+ + Y++ + +S K
Sbjct: 653 QKPIVRKGERVEKDQIIADGPSTDHGELALGKN---VLVAYMPWEGYNYEDAILISEKLV 709
Query: 1101 VPSYLEKVLVSSNSEDAFLIKMLLRQTRR--PEIGDKFSSRHGQKGVI--GLIVEQEDM- 1155
+ + DA K+ + R P +G+ ++G+I G V D+
Sbjct: 710 KEDVFTSIHIEEYECDARDTKLGPEEITRDIPNVGEDALKDLDERGIIRIGAEVRPGDIL 769
Query: 1156 -----PFNESGICPD--IIMNPHGLKGCD-RITEYKEVPVSYKGSVPSYLEKVLVSSNSE 1207
P E+ + + ++ G K + R T + VP G V KV N +
Sbjct: 770 VGKVTPKGETELTAEERLLRAIFGEKAREVRDTSLR-VPHGESGKVVDV--KVFSRENGD 826
Query: 1208 DA-----FLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNP 1262
+ L+++ + Q R+ +GDK + RHG KGV+ I+ +EDMPF G +I++NP
Sbjct: 827 ELSPGVNMLVRVYIAQKRKISVGDKMAGRHGNKGVVARILPEEDMPFLPDGTPVEIVLNP 886
Query: 1263 HGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYS 1322
G PSRM +G+++E G A G F G D+ E L + G GK
Sbjct: 887 LGVPSRMNIGQILECHLGWAAKALGINVATPIFNGATEEDIFEALRKAGLPEDGKIEVRD 946
Query: 1323 GITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTG 1368
G TGE ++ + G VY KL H+V DKIHARS GP ++T+QP G
Sbjct: 947 GRTGEPFDSRVTVGYVYMLKLAHLVDDKIHARSTGPYSLVTQQPLG 992
Score = 193 (73.0 bits), Expect = 6.2e-13, Sum P(4) = 6.2e-13
Identities = 80/291 (27%), Positives = 129/291 (44%)
Query: 971 TNFHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTH 1030
T+ +L G+N +A M + GY+ EDA+++++ + V+ + +++Y
Sbjct: 675 TDHGELALGKNVLVAYMPWEGYNYEDAILISEKLVKED-----VFTSIH--IEEYECDAR 727
Query: 1031 DRILGPLLEADTRK-PVYRHRAL---DQDGIVAPGEQICERQVLVNKSMP------TIS- 1079
D LGP E TR P AL D+ GI+ G ++ +LV K P T
Sbjct: 728 DTKLGP--EEITRDIPNVGEDALKDLDERGIIRIGAEVRPGDILVGKVTPKGETELTAEE 785
Query: 1080 --VSAI-SMATPEYKE----VPVSYKGSVPSYLEKVLVSSNSEDA-----FLIKMLLRQT 1127
+ AI E ++ VP G V KV N ++ L+++ + Q
Sbjct: 786 RLLRAIFGEKAREVRDTSLRVPHGESGKVVDV--KVFSRENGDELSPGVNMLVRVYIAQK 843
Query: 1128 RRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPV 1187
R+ +GDK + RHG KGV+ I+ +EDMPF G +I++NP G+ I + E +
Sbjct: 844 RKISVGDKMAGRHGNKGVVARILPEEDMPFLPDGTPVEIVLNPLGVPSRMNIGQILECHL 903
Query: 1188 SY--KGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKG 1236
+ K + + + ED F LR+ PE G K R G+ G
Sbjct: 904 GWAAKALGINVATPIFNGATEEDIF---EALRKAGLPEDG-KIEVRDGRTG 950
Score = 80 (33.2 bits), Expect = 8.2e-25, Sum P(3) = 8.2e-25
Identities = 27/95 (28%), Positives = 46/95 (48%)
Query: 198 TNALTAAIQT--GNWTIRRFKMERQGVTQVLS--RLSYISGLGMMTRINSQFEKTRKVSG 253
T + AAI+ G+ + +F + + ++ RLS + G G ++R + FE
Sbjct: 386 TRPIVAAIKEFFGSSQLSQFMDQTNPLAELTHKRRLSAL-GPGGLSRERAGFEV------ 438
Query: 254 PRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHI 288
R + S +G +CP +TPEG GL+ NL +
Sbjct: 439 -RDVHHSHYGRMCPIETPEGPNIGLIGNLTTYARV 472
Score = 71 (30.1 bits), Expect = 2.4e-25, Sum P(4) = 2.4e-25
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 360 ECRLRDLTYSAPITVDIEY-TRGSQRVVRSDLVIGRMPIMLQ 400
EC+ RD TYSAP+ V + + + + ++ +G P+M +
Sbjct: 77 ECKERDFTYSAPLRVKVRLLNKETGEIKEQEVFLGDFPLMTE 118
Score = 60 (26.2 bits), Expect = 2.4e-25, Sum P(4) = 2.4e-25
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 486 IRRMVLALSDPDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELKE 534
IR ++ + +DD D+ GN+RL G LL F R ++E
Sbjct: 320 IRYLLGLMRGQGKVDDIDHLGNRRLRSVGELLQNQFRIGLARMERVVRE 368
Score = 38 (18.4 bits), Expect = 2.4e-25, Sum P(4) = 2.4e-25
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 757 LVPYPHHNQAPRNTYQCAMGKQAMGCI 783
L+P+ H+ A R M +QA+ I
Sbjct: 560 LIPFLEHDDANRALMGANMQRQAVPLI 586
Score = 38 (18.4 bits), Expect = 2.4e-25, Sum P(4) = 2.4e-25
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 914 LVPYPHHNQAPRNTYQCAMGKQAMGCI 940
L+P+ H+ A R M +QA+ I
Sbjct: 560 LIPFLEHDDANRALMGANMQRQAVPLI 586
>UNIPROTKB|H7C0D9 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR009674
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF06883
PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005634 GO:GO:0003677
GO:GO:0006351 EMBL:AC012442 GO:GO:0003899 GO:GO:0032549
Gene3D:2.40.270.10 HGNC:HGNC:20454 Gene3D:2.40.50.150
Ensembl:ENST00000458012 Bgee:H7C0D9 Uniprot:H7C0D9
Length = 308
Score = 294 (108.6 bits), Expect = 1.5e-24, P = 1.5e-24
Identities = 77/217 (35%), Positives = 112/217 (51%)
Query: 959 QRPMVESKTIRITNFHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNS 1018
Q P+V + P G NA +AV+SY+GYD+EDA+I+NKAS +RGF VY++
Sbjct: 103 QSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSE 162
Query: 1019 KCVLKQYPNQTHDRILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTI 1078
L + Q ++ + D R V + LD DG+ G ++ P
Sbjct: 163 FIDLSEKIKQGDSSLVFGIKPGDPR--VLQK--LDDDGLPFIGAKL-------QYGDPYY 211
Query: 1079 SVSAISMATPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKML---LRQTRRPEIGDK 1135
S +++ T E + YK ++ + V SN + K + +R R P IGDK
Sbjct: 212 SY--LNLNTGE--SFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDK 267
Query: 1136 FSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHG 1172
F+SRHGQKG++ + EDMPF ESG+ PDI+ NPHG
Sbjct: 268 FASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHG 304
Score = 200 (75.5 bits), Expect = 5.5e-13, P = 5.5e-13
Identities = 39/83 (46%), Positives = 52/83 (62%)
Query: 1189 YKGSVPSYLEKVLVSSNSEDAFLIKML---LRQTRRPEIGDKFSSRHGQKGVIGLIVEQE 1245
YK ++ + V SN + K + +R R P IGDKF+SRHGQKG++ + E
Sbjct: 226 YKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAE 285
Query: 1246 DMPFNESGICPDIIMNPHGYPSR 1268
DMPF ESG+ PDI+ NPHG+PSR
Sbjct: 286 DMPFTESGMVPDILFNPHGFPSR 308
>TIGR_CMR|BA_0102 [details] [associations]
symbol:BA_0102 "DNA-directed RNA polymerase, beta subunit"
species:198094 "Bacillus anthracis str. Ames" [GO:0000345
"cytosolic DNA-directed RNA polymerase complex" evidence=ISS]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03043 ProtClustDB:PRK00405 Gene3D:2.30.150.10
PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013 RefSeq:NP_842670.1
RefSeq:YP_026388.1 RefSeq:YP_052605.1 ProteinModelPortal:Q81VT8
IntAct:Q81VT8 PRIDE:Q81VT8 DNASU:1086075
EnsemblBacteria:EBBACT00000010978 EnsemblBacteria:EBBACT00000018107
EnsemblBacteria:EBBACT00000023445 GeneID:1086075 GeneID:2820986
GeneID:2850888 KEGG:ban:BA_0102 KEGG:bar:GBAA_0102 KEGG:bat:BAS0102
HOGENOM:HOG000218611 OMA:FMTWEGY BioCyc:BANT260799:GJAJ-113-MONOMER
BioCyc:BANT261594:GJ7F-115-MONOMER Uniprot:Q81VT8
Length = 1177
Score = 301 (111.0 bits), Expect = 3.5e-24, Sum P(5) = 3.5e-24
Identities = 65/158 (41%), Positives = 89/158 (56%)
Query: 1211 LIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMT 1270
L++ + Q R+ GDK + RHG KGVI I+ +EDMP+ G DI++NP G PSRM
Sbjct: 907 LVRAYIVQKRKISEGDKMAGRHGNKGVISRILPEEDMPYLPDGTPIDIMLNPLGVPSRMN 966
Query: 1271 VGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALE 1330
+G+++EL G A G + F G + DV + G K I Y G TGE +
Sbjct: 967 IGQVLELHLGMAARYLGIHIATPVFDGAREEDVWGTIEEAGMANDAKTILYDGRTGEPFD 1026
Query: 1331 AYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTG 1368
+ G +Y KL HMV DK+HARS GP ++T+QP G
Sbjct: 1027 NRVSVGVMYMIKLAHMVDDKLHARSTGPYSLVTQQPLG 1064
Score = 169 (64.5 bits), Expect = 9.2e-11, Sum P(4) = 9.2e-11
Identities = 68/244 (27%), Positives = 114/244 (46%)
Query: 975 KLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRIL 1034
+L G+N + M++ GY+ EDA+IM++ + VY + +++Y ++ D L
Sbjct: 751 ELALGRNVLVGFMTWDGYNYEDAIIMSERLVKDD-----VYTSIH--IEEYESEARDTKL 803
Query: 1035 GPLLEADTRK-PVYRH---RALDQDGIVAPGEQICERQVLVNKSMP--TISVSAI----- 1083
GP E TR P R LD+ GI+ G ++ + +LV K P ++A
Sbjct: 804 GP--EEITRDIPNVGEDALRNLDERGIIRVGAEVKDGDLLVGKVTPKGVTELTAEERLLH 861
Query: 1084 SMATPEYKEV-PVSYK---GSVPSYLEKVLVSSNSEDAF------LIKMLLRQTRRPEIG 1133
++ + +EV S + G L+ + + D L++ + Q R+ G
Sbjct: 862 AIFGEKAREVRDTSLRVPHGGGGIILDVKVFNREDGDELPPGVNQLVRAYIVQKRKISEG 921
Query: 1134 DKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSV 1193
DK + RHG KGVI I+ +EDMP+ G DI++NP G+ I + E+ + G
Sbjct: 922 DKMAGRHGNKGVISRILPEEDMPYLPDGTPIDIMLNPLGVPSRMNIGQVLEL---HLGMA 978
Query: 1194 PSYL 1197
YL
Sbjct: 979 ARYL 982
Score = 77 (32.2 bits), Expect = 3.5e-24, Sum P(5) = 3.5e-24
Identities = 15/48 (31%), Positives = 28/48 (58%)
Query: 360 ECRLRDLTYSAPITVDIEY-TRGSQRVVRSDLVIGRMPIMLQSSKCVL 406
EC+ RD+TY+AP+ V + + + V D+ +G P+M ++ V+
Sbjct: 80 ECKERDVTYAAPLRVKVRLINKETGEVKEQDVFMGDFPLMTETGTFVI 127
Score = 76 (31.8 bits), Expect = 2.3e-23, Sum P(3) = 2.3e-23
Identities = 21/56 (37%), Positives = 31/56 (55%)
Query: 228 RLSYISGLGMMTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLA 283
RLS + G G +TR + FE R + S +G +CP +TPEG GL+ +L+
Sbjct: 484 RLSAL-GPGGLTRERAGFEV-------RDVHYSHYGRMCPIETPEGPNIGLINSLS 531
Score = 58 (25.5 bits), Expect = 3.5e-24, Sum P(5) = 3.5e-24
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 500 DDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELKE 534
DD D+ GN+RL G LL F R ++E
Sbjct: 398 DDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRE 432
Score = 38 (18.4 bits), Expect = 3.5e-24, Sum P(5) = 3.5e-24
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 825 QISPGGAEELTARE 838
+++P G ELTA E
Sbjct: 844 KVTPKGVTELTAEE 857
Score = 38 (18.4 bits), Expect = 3.5e-24, Sum P(5) = 3.5e-24
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 575 HSGRVRLM--PEGPTI-LLNS 592
H GR+ + PEGP I L+NS
Sbjct: 509 HYGRMCPIETPEGPNIGLINS 529
>TIGR_CMR|CBU_0231 [details] [associations]
symbol:CBU_0231 "DNA-directed RNA polymerase, beta
subunit" species:227377 "Coxiella burnetii RSA 493" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
EMBL:CP001019 EMBL:U86688 GenomeReviews:CP001019_GR eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
RefSeq:YP_002304193.1 ProteinModelPortal:B6J270 STRING:B6J270
PRIDE:B6J270 GeneID:7014190 KEGG:cbg:CbuG_1774 PATRIC:17914647
OMA:HANEEIT Uniprot:B6J270
Length = 1375
Score = 174 (66.3 bits), Expect = 2.0e-23, Sum P(5) = 2.0e-23
Identities = 35/72 (48%), Positives = 47/72 (65%)
Query: 1211 LIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMT 1270
++K+ L RR + GDK + RHG KGVI IV EDMP+ E G DI++NP G PSRM
Sbjct: 1084 IVKVYLAVKRRIQPGDKMAGRHGNKGVISTIVPIEDMPYLEDGTPVDIVLNPLGVPSRMN 1143
Query: 1271 VGKLIELLAGKA 1282
+G+++E G A
Sbjct: 1144 IGQVLETHLGWA 1155
Score = 135 (52.6 bits), Expect = 8.7e-18, Sum P(7) = 8.7e-18
Identities = 27/55 (49%), Positives = 36/55 (65%)
Query: 1119 LIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
++K+ L RR + GDK + RHG KGVI IV EDMP+ E G DI++NP G+
Sbjct: 1084 IVKVYLAVKRRIQPGDKMAGRHGNKGVISTIVPIEDMPYLEDGTPVDIVLNPLGV 1138
Score = 115 (45.5 bits), Expect = 2.0e-23, Sum P(5) = 2.0e-23
Identities = 28/93 (30%), Positives = 45/93 (48%)
Query: 1276 ELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYS 1335
E++ L +G F G ++++ L G+ Y G TG+ + +
Sbjct: 1201 EIVMLAKNLRKGVPISSPVFDGATEEEIKQLLKMADLPTSGQAALYDGRTGKKFDRSVTV 1260
Query: 1336 GPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTG 1368
G +Y KL H+V DK+HARS G ++T+QP G
Sbjct: 1261 GYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG 1293
Score = 98 (39.6 bits), Expect = 2.0e-23, Sum P(5) = 2.0e-23
Identities = 36/138 (26%), Positives = 67/138 (48%)
Query: 187 DIVNHMRQDTIT-NALTAAIQT--GNWTIRRFKMERQGVTQVLS--RLSYISGLGMMTRI 241
D+ N M QD + ++AAI+ G+ + +F + ++++ R+S + G G +TR
Sbjct: 504 DVENLMPQDLVNAKPVSAAIKEFFGSSQLSQFMDQNNPLSEITHKRRVSAL-GPGGLTRE 562
Query: 242 NSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIM 301
+ FE R + + +G +CP +TPEG GL+ +LA+ +E L+
Sbjct: 563 RAGFEV-------RDVHVTHYGRVCPIETPEGPNIGLINSLAVFARA----NEYGFLETP 611
Query: 302 YNIGIEHIAMFNGEELSS 319
Y ++ + E LS+
Sbjct: 612 YRKVVDRVVTDETEYLSA 629
Score = 92 (37.4 bits), Expect = 2.0e-23, Sum P(5) = 2.0e-23
Identities = 34/124 (27%), Positives = 57/124 (45%)
Query: 971 TNFHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTH 1030
T+ +L GQN +A M ++GY+ ED++++++ ++ + + CV +
Sbjct: 811 TDIGELALGQNLLVAFMPWNGYNFEDSILISERLVEEDRFTTIHIQEFTCVAR------- 863
Query: 1031 DRILGPLLEADTRKPVYRHRAL---DQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT 1087
D LGP E + P AL D+ GIV G ++ +LV K P + T
Sbjct: 864 DTKLGPE-EITSDIPNVGESALAKLDESGIVHIGAEVNAGDILVGKVTP----KGETQLT 918
Query: 1088 PEYK 1091
PE K
Sbjct: 919 PEEK 922
Score = 71 (30.1 bits), Expect = 7.7e-22, Sum P(7) = 7.7e-22
Identities = 28/114 (24%), Positives = 51/114 (44%)
Query: 360 ECRLRDLTYSAPITVDIE---YTR---GSQRVVRS----DLVIGRMPIMLQSSKCVLRNK 409
EC+LR LTY+AP+ V++ Y + ++ ++ ++ +G +P+M ++ V+ N
Sbjct: 102 ECKLRGLTYAAPLKVNMRLVIYDKEAPAGKKAIKDIKEQEVYMGEIPLMTETGSLVI-NG 160
Query: 410 TEYXXXXXXXXXXXVTMHSQRTSPLLSCKKLRQKRFQTYKKTPVD---DARDFL 460
TE V + S K L R Y+ + +D D +D L
Sbjct: 161 TERVVVSQLHRSPGVFFEHDKGKTHSSGKLLYSARVIPYRGSWLDFEFDPKDCL 214
Score = 57 (25.1 bits), Expect = 7.7e-22, Sum P(7) = 7.7e-22
Identities = 17/63 (26%), Positives = 32/63 (50%)
Query: 484 VMIRRMVLALSD-PDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELKET-NLSGVV 541
V + R+++ + D +DD D+ GN+R+ G + F R +K+ +L+ V
Sbjct: 447 VDVLRVLVDIRDGKGDVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKDRLSLADVE 506
Query: 542 NLV 544
NL+
Sbjct: 507 NLM 509
Score = 41 (19.5 bits), Expect = 2.3e-16, Sum P(4) = 2.3e-16
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 1135 KFSSRHGQKGVIGL-IVEQEDM 1155
KF+ R G+K + GL ++ +ED+
Sbjct: 425 KFNRRVGRKELTGLDVLSKEDI 446
Score = 39 (18.8 bits), Expect = 3.7e-13, Sum P(4) = 3.7e-13
Identities = 22/91 (24%), Positives = 39/91 (42%)
Query: 906 NKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIG--YNQQNRIDTLMYNLVYAQRPMV 963
N R + + YP +A N +GK+ + + Y + +I++ Y + Q+ +
Sbjct: 5 NSRSRNSATISYPEKRRARVN-----LGKREVEILKTPYLLETQIES--YRK-FLQKDIA 56
Query: 964 ESKTIRITNFHKLPAGQNATIAVMSYSGYDI 994
K R N L A + + SYSGY +
Sbjct: 57 AEK--REDN--GLHAAFKSVFPITSYSGYAV 83
Score = 38 (18.4 bits), Expect = 7.7e-22, Sum P(7) = 7.7e-22
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 682 NMHQFLG--FKRFDDFLYEGKIEYLDVNEGNDSHIAVSESGI 721
N + FL +++ D + + EYL E D +IA + + +
Sbjct: 603 NEYGFLETPYRKVVDRVVTDETEYLSAIEEGDYYIAQANTNV 644
Score = 37 (18.1 bits), Expect = 2.0e-23, Sum P(5) = 2.0e-23
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 757 LVPYPHHNQAPRNTYQCAMGKQAMGCI 783
L+P+ H+ A R M +QA+ I
Sbjct: 688 LIPFLEHDDANRALMGSNMQRQAVPTI 714
Score = 37 (18.1 bits), Expect = 7.7e-22, Sum P(7) = 7.7e-22
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 914 LVPYPHHNQAPRNTYQCAMGKQAMGCI 940
L+P+ H+ A R M +QA+ I
Sbjct: 688 LIPFLEHDDANRALMGSNMQRQAVPTI 714
>UNIPROTKB|F8VRU2 [details] [associations]
symbol:POLR3B "DNA-directed RNA polymerase III subunit
RPC2" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
InterPro:IPR007642 InterPro:IPR015712 Pfam:PF04561
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
EMBL:AC009721 GO:GO:0032549 EMBL:AC078992 EMBL:AC080012
HGNC:HGNC:30348 IPI:IPI01022585 ProteinModelPortal:F8VRU2
SMR:F8VRU2 Ensembl:ENST00000549569 ArrayExpress:F8VRU2 Bgee:F8VRU2
Uniprot:F8VRU2
Length = 170
Score = 279 (103.3 bits), Expect = 5.8e-23, P = 5.8e-23
Identities = 51/86 (59%), Positives = 70/86 (81%)
Query: 449 KKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNK 508
KKT +++AR+ L+ST + H+PV F+ K +Y AVM+RR++LA D + +DDRDYYGNK
Sbjct: 60 KKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQGD-NKVDDRDYYGNK 118
Query: 509 RLELAGSLLSLMFEDVFKRFNSELKE 534
RLELAG LLSL+FED+FK+FNSE+K+
Sbjct: 119 RLELAGQLLSLLFEDLFKKFNSEMKK 144
>TIGR_CMR|GSU_2863 [details] [associations]
symbol:GSU_2863 "DNA-directed RNA polymerase, beta
subunit" species:243231 "Geobacter sulfurreducens PCA" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0003899 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 HOGENOM:HOG000218612
KO:K03043 ProtClustDB:PRK00405 Gene3D:2.30.150.10
PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013 OMA:FMTWEGY
RefSeq:NP_953905.1 ProteinModelPortal:Q748Y6 PRIDE:Q748Y6
GeneID:2686783 KEGG:gsu:GSU2863 PATRIC:22028577
BioCyc:GSUL243231:GH27-2844-MONOMER Uniprot:Q748Y6
Length = 1370
Score = 171 (65.3 bits), Expect = 1.3e-22, Sum P(4) = 1.3e-22
Identities = 31/72 (43%), Positives = 49/72 (68%)
Query: 1211 LIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMT 1270
++K+ + R+ ++GDK + RHG KGV+ I+ +EDMP+ E G +I++NP G PSRM
Sbjct: 1077 MVKVYIAIKRKLQVGDKMAGRHGNKGVVSRILPEEDMPYMEDGRPVEIVLNPLGVPSRMN 1136
Query: 1271 VGKLIELLAGKA 1282
VG+++E G A
Sbjct: 1137 VGQILETHLGWA 1148
Score = 134 (52.2 bits), Expect = 9.9e-19, Sum P(4) = 9.9e-19
Identities = 29/92 (31%), Positives = 54/92 (58%)
Query: 1119 LIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGLKGCDR 1178
++K+ + R+ ++GDK + RHG KGV+ I+ +EDMP+ E G +I++NP G+
Sbjct: 1077 MVKVYIAIKRKLQVGDKMAGRHGNKGVVSRILPEEDMPYMEDGRPVEIVLNPLGVPSRMN 1136
Query: 1179 ITEYKEVPVSY--KGSVPSYLEKVLVSSNSED 1208
+ + E + + KG + +E++L S + D
Sbjct: 1137 VGQILETHLGWAAKG-IGWKIEEMLESYSPAD 1167
Score = 130 (50.8 bits), Expect = 1.3e-22, Sum P(4) = 1.3e-22
Identities = 31/93 (33%), Positives = 46/93 (49%)
Query: 1276 ELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYS 1335
EL+ L G F G ++ L + G++ + Y G +GE + +
Sbjct: 1193 ELMNVAKRLQRGVAMASPVFEGASEEQIRSMLDKAGFDETAQVSLYDGKSGEPFKHKVTV 1252
Query: 1336 GPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTG 1368
G +Y KL H+V DKIHARS GP ++T+QP G
Sbjct: 1253 GVMYVLKLHHLVDDKIHARSIGPYSLVTQQPLG 1285
Score = 82 (33.9 bits), Expect = 1.3e-22, Sum P(4) = 1.3e-22
Identities = 29/107 (27%), Positives = 52/107 (48%)
Query: 187 DIVNHMRQDTITNALTAAIQT---GNWTIRRFKMERQGVTQVLS--RLSYISGLGMMTRI 241
++ N M D I + +A+ G+ + +F + +++V RLS + G G +TR
Sbjct: 491 EVENLMPHDLINSKPVSAVVKEFFGSSQLSQFMDQTNPLSEVTHKRRLSAL-GPGGLTRE 549
Query: 242 NSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHI 288
+ FE R + + +G +CP +TPEG GL+ +L+ I
Sbjct: 550 RAGFEV-------RDVHPTHYGRVCPIETPEGPNIGLIASLSTYARI 589
Score = 80 (33.2 bits), Expect = 1.3e-22, Sum P(4) = 1.3e-22
Identities = 26/108 (24%), Positives = 48/108 (44%)
Query: 971 TNFHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTH 1030
T+ +L GQN +A M + GY+ ED++++++ + + +CV +
Sbjct: 797 TDMGELALGQNVVVAFMPWGGYNFEDSILVSEKLVKDDRYTSIHIEEFECVARD-TKLGK 855
Query: 1031 DRILG--PLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMP 1076
+ I P L + K LD+ GI+ G ++ +LV K P
Sbjct: 856 EEITSDIPNLGEEALKD------LDESGIIRIGAEVKPGDILVGKITP 897
Score = 66 (28.3 bits), Expect = 1.0e-21, Sum P(5) = 1.0e-21
Identities = 17/61 (27%), Positives = 30/61 (49%)
Query: 485 MIRRMVLALSDPDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELKET-NLSGVVNL 543
++R ++ + +DD D+ GN+R+ G LL + R +KE +L V NL
Sbjct: 436 VVRYLIDLKNGKGTIDDIDHLGNRRVRAVGELLENQYRIGLVRMERAIKERMSLQEVENL 495
Query: 544 V 544
+
Sbjct: 496 M 496
Score = 52 (23.4 bits), Expect = 1.0e-21, Sum P(5) = 1.0e-21
Identities = 17/62 (27%), Positives = 32/62 (51%)
Query: 360 ECRLRDLTYSAPITV-------DIEYTRG--SQRVVRS-DLVIGRMPIMLQSSKCVLRNK 409
EC R +T++AP+ V D+ G S R ++ ++ G +P+M ++ ++ N
Sbjct: 88 ECHQRGMTFAAPMKVKVRLVVWDVNKDTGVRSIRDIKEQEVYFGEIPLMTENGTFII-NG 146
Query: 410 TE 411
TE
Sbjct: 147 TE 148
Score = 41 (19.5 bits), Expect = 1.8e-18, Sum P(4) = 1.8e-18
Identities = 20/82 (24%), Positives = 33/82 (40%)
Query: 838 ESCHEVLKIISFSISVAVFDSVWLGDVKQGVHQLSEEKEPRLLRKFQYFDVRTPYRLRRL 897
E CH+ + + V V VW + GV + + KE + F + T +
Sbjct: 87 EECHQRGMTFAAPMKVKVRLVVWDVNKDTGVRSIRDIKEQEVY--FGEIPLMTENGTFII 144
Query: 898 LCWECVLYNKRFHSPGLVPYPH 919
E V+ ++ SPG+ Y H
Sbjct: 145 NGTERVIVSQLHRSPGVF-YDH 165
>TIGR_CMR|SPO_3508 [details] [associations]
symbol:SPO_3508 "DNA-directed RNA polymerase, beta
subunit" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000345
"cytosolic DNA-directed RNA polymerase complex" evidence=ISS]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 OMA:QRDLTYA ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
RefSeq:YP_168703.1 ProteinModelPortal:Q5LMQ5 PRIDE:Q5LMQ5
GeneID:3196296 KEGG:sil:SPO3508 PATRIC:23380485 Uniprot:Q5LMQ5
Length = 1378
Score = 179 (68.1 bits), Expect = 2.7e-16, Sum P(3) = 2.7e-16
Identities = 44/119 (36%), Positives = 64/119 (53%)
Query: 1211 LIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMT 1270
++K+ + R+ + GDK + RHG KGVI +V EDMPF G D +NP G PSRM
Sbjct: 1081 MVKVFIAVKRKLQPGDKMAGRHGNKGVISKVVPMEDMPFLADGTPVDFCLNPLGVPSRMN 1140
Query: 1271 VGKLIELLAGKAGLMEG-NYKEGTAF--GGTKLVDVQEELIRHGYNYQGKDIFYSGITG 1326
VG+++E G A G N E L V++ + +H Y G+D++ GI+G
Sbjct: 1141 VGQILETHMGWAARGLGLNVDEALQEYRRSGDLTPVRDAM-KHAY---GEDVYAEGISG 1195
Score = 165 (63.1 bits), Expect = 2.8e-22, Sum P(4) = 2.8e-22
Identities = 50/157 (31%), Positives = 76/157 (48%)
Query: 1221 RPEIGDKFSSRHG--QKGVIGLIVEQEDMPFNESG-ICP--DIIMNPHG---YPSRMTVG 1272
R +G + G +G +GL V++ + SG + P D + + +G Y ++ G
Sbjct: 1138 RMNVGQILETHMGWAARG-LGLNVDEALQEYRRSGDLTPVRDAMKHAYGEDVYAEGIS-G 1195
Query: 1273 KLIELLAGKAGLMEGNYKEGT-AFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEA 1331
+ L AG + T F G K DV + L R G++ G+ + + G TGE
Sbjct: 1196 MDEDTLVEAAGNVTRGVPIATPVFDGAKEADVNDALTRAGFDTSGQSVLFDGRTGEQFAR 1255
Query: 1332 YIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTG 1368
+ G Y KL H+V DKIHARS GP ++T+QP G
Sbjct: 1256 PVTVGIKYLLKLHHLVDDKIHARSTGPYSLVTQQPLG 1292
Score = 121 (47.7 bits), Expect = 2.8e-22, Sum P(4) = 2.8e-22
Identities = 23/55 (41%), Positives = 33/55 (60%)
Query: 1119 LIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
++K+ + R+ + GDK + RHG KGVI +V EDMPF G D +NP G+
Sbjct: 1081 MVKVFIAVKRKLQPGDKMAGRHGNKGVISKVVPMEDMPFLADGTPVDFCLNPLGV 1135
Score = 88 (36.0 bits), Expect = 2.8e-22, Sum P(4) = 2.8e-22
Identities = 36/125 (28%), Positives = 59/125 (47%)
Query: 971 TNFHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTH 1030
T+ +L G+N +A M ++GY+ ED++++++ R V+ + ++++
Sbjct: 808 TDMGELALGKNVVVAFMPWNGYNYEDSILISER-----IARDDVFTSIH--IEEFEVAAR 860
Query: 1031 DRILGPLLEADTRK-PVYRHRAL---DQDGIVAPGEQICERQVLVNKSMPTISVSAISMA 1086
D LGP E TR P AL D+ GIV G ++ +LV K P S
Sbjct: 861 DTKLGP--EEITRDIPNVGEEALRNLDEAGIVYIGAEVQPGDILVGKITP----KGESPM 914
Query: 1087 TPEYK 1091
TPE K
Sbjct: 915 TPEEK 919
Score = 86 (35.3 bits), Expect = 2.8e-22, Sum P(4) = 2.8e-22
Identities = 30/102 (29%), Positives = 50/102 (49%)
Query: 192 MRQDTIT-NALTAAIQT--GNWTIRRFKMERQGVTQVLS--RLSYISGLGMMTRINSQFE 246
M QD I AA++ G+ + +F + +++V RLS + G G +TR + FE
Sbjct: 508 MPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEVTHKRRLSAL-GPGGLTRERAGFE 566
Query: 247 KTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHI 288
R + + +G +CP +TPEG GL+ +LA +
Sbjct: 567 V-------RDVHPTHYGRMCPIETPEGPNIGLINSLATFARV 601
Score = 74 (31.1 bits), Expect = 3.6e-22, Sum P(5) = 3.6e-22
Identities = 31/114 (27%), Positives = 49/114 (42%)
Query: 360 ECRLRDLTYSAPITV-------DIEYTRGSQRVV---RSDLVIGRMPIMLQSSKCVLRNK 409
EC RD+TYSAP+ V D++ G++ V D+ +G MP+M + ++ N
Sbjct: 88 ECMQRDMTYSAPLKVTLRLIVFDVDEDTGAKSVKDIKEQDVFMGDMPLMTPNGTFIV-NG 146
Query: 410 TEYXXXXXXXXXXXVTMHSQRTSPLLSCKKLRQKRFQTYKKTPVD---DARDFL 460
TE V + S K L R Y+ + +D DA+D +
Sbjct: 147 TERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFACRIIPYRGSWLDFEFDAKDIV 200
Score = 56 (24.8 bits), Expect = 3.6e-22, Sum P(5) = 3.6e-22
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 499 LDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELKETNLSGV 540
+DD D+ GN+R+ G L+ + R +KE +S V
Sbjct: 462 IDDIDHLGNRRVRSVGELMENQYRVGLLRMERAIKE-RMSSV 502
>TIGR_CMR|APH_1024 [details] [associations]
symbol:APH_1024 "DNA-directed RNA polymerase, beta
subunit" species:212042 "Anaplasma phagocytophilum HZ" [GO:0000345
"cytosolic DNA-directed RNA polymerase complex" evidence=ISS]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 RefSeq:YP_505583.1 ProteinModelPortal:Q2GJ68
STRING:Q2GJ68 PRIDE:Q2GJ68 GeneID:3930425 KEGG:aph:APH_1024
PATRIC:20950798 KO:K03043 OMA:QRDLTYA ProtClustDB:PRK00405
BioCyc:APHA212042:GHPM-1031-MONOMER Gene3D:2.30.150.10
PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013 Uniprot:Q2GJ68
Length = 1383
Score = 155 (59.6 bits), Expect = 3.1e-22, Sum P(4) = 3.1e-22
Identities = 33/78 (42%), Positives = 46/78 (58%)
Query: 1211 LIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMT 1270
++K+ + + GDK + RHG KGVI IV EDMP E G DII+N G PSRM
Sbjct: 1080 IVKVFVAVKHNLQPGDKMAGRHGNKGVISRIVPVEDMPHLEDGTPVDIILNSLGVPSRMN 1139
Query: 1271 VGKLIELLAGKAGLMEGN 1288
+G+++E G A + G+
Sbjct: 1140 IGQILETHLGWAAVNLGH 1157
Score = 118 (46.6 bits), Expect = 3.1e-22, Sum P(4) = 3.1e-22
Identities = 27/74 (36%), Positives = 39/74 (52%)
Query: 1295 FGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHAR 1354
F G K + L + G+ Y G +G+ + + G +Y KL H+V DKIHAR
Sbjct: 1219 FEGPKDAQISRLLELADVDPSGQVDLYDGRSGQKFDRKVTVGYIYMLKLHHLVDDKIHAR 1278
Query: 1355 SRGPRVVLTRQPTG 1368
S GP ++T+QP G
Sbjct: 1279 SVGPYGLVTQQPLG 1292
Score = 112 (44.5 bits), Expect = 9.6e-18, Sum P(4) = 9.6e-18
Identities = 24/55 (43%), Positives = 32/55 (58%)
Query: 1119 LIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
++K+ + + GDK + RHG KGVI IV EDMP E G DII+N G+
Sbjct: 1080 IVKVFVAVKHNLQPGDKMAGRHGNKGVISRIVPVEDMPHLEDGTPVDIILNSLGV 1134
Score = 103 (41.3 bits), Expect = 3.1e-22, Sum P(4) = 3.1e-22
Identities = 30/107 (28%), Positives = 52/107 (48%)
Query: 975 KLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRIL 1034
+L G+N +A MS+ GY+ ED+++++ + R + +CV++ P ++I+
Sbjct: 817 ELALGKNVLVAFMSWQGYNFEDSIVISSDVVKRDVFTSIHIEEFECVVRDTPLGP-EKIM 875
Query: 1035 GPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS 1081
+ D + H LD GIV G ++ VLV K P VS
Sbjct: 876 RSV--PDVNEESLSH--LDDVGIVNIGAEVSAGSVLVGKVTPRPPVS 918
Score = 84 (34.6 bits), Expect = 3.1e-22, Sum P(4) = 3.1e-22
Identities = 22/61 (36%), Positives = 34/61 (55%)
Query: 228 RLSYISGLGMMTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTH 287
RLS + G G +TR + FE R + + +G +CP +TPEG+ GL+ +LA+
Sbjct: 554 RLSAL-GPGGLTRERAGFEV-------RDVHPTHYGRICPIETPEGQNIGLISSLAIYAK 605
Query: 288 I 288
I
Sbjct: 606 I 606
Score = 59 (25.8 bits), Expect = 1.3e-19, Sum P(5) = 1.3e-19
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 485 MIRRMVLALSDPDMLDDRDYYGNKRLELAGSLLSLMF 521
+I+++VL ++DD D+ GN+R+ G + F
Sbjct: 453 VIKKLVLLPDGEGVVDDIDHLGNRRVRSVGEFIENQF 489
Score = 44 (20.5 bits), Expect = 1.3e-19, Sum P(5) = 1.3e-19
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 355 QTTPHECRLRDLTYSAPITVDIEY 378
Q +EC R +T+S P+ + + +
Sbjct: 89 QYDEYECIKRGITFSVPMRITLRF 112
>TIGR_CMR|SO_0224 [details] [associations]
symbol:SO_0224 "DNA-directed RNA polymerase, beta subunit"
species:211586 "Shewanella oneidensis MR-1" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
OMA:FMTWEGY RefSeq:NP_715864.1 ProteinModelPortal:Q8EK74
PRIDE:Q8EK74 GeneID:1168107 KEGG:son:SO_0224 PATRIC:23520141
Uniprot:Q8EK74
Length = 1345
Score = 166 (63.5 bits), Expect = 7.7e-22, Sum P(5) = 7.7e-22
Identities = 33/72 (45%), Positives = 47/72 (65%)
Query: 1211 LIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMT 1270
++K+ L R + GDK + RHG KGVI I EDMP++E G DI++NP G PSRM
Sbjct: 1050 IVKVYLAVKRTIQPGDKMAGRHGNKGVISKINPIEDMPYDEQGNPVDIVLNPLGVPSRMN 1109
Query: 1271 VGKLIELLAGKA 1282
+G+++E+ G A
Sbjct: 1110 IGQVLEVHLGAA 1121
Score = 132 (51.5 bits), Expect = 1.3e-17, Sum P(6) = 1.3e-17
Identities = 36/115 (31%), Positives = 59/115 (51%)
Query: 1119 LIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGLKGCDR 1178
++K+ L R + GDK + RHG KGVI I EDMP++E G DI++NP G+
Sbjct: 1050 IVKVYLAVKRTIQPGDKMAGRHGNKGVISKINPIEDMPYDEQGNPVDIVLNPLGVPSRMN 1109
Query: 1179 ITEYKEVPV--SYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSR 1231
I + EV + + KG + + +L + ++ ++Q E+GD+ R
Sbjct: 1110 IGQVLEVHLGAAAKG-IGHKIAAMLEDQREKGLAEVRNYIKQVY--ELGDEVQQR 1161
Score = 127 (49.8 bits), Expect = 7.7e-22, Sum P(5) = 7.7e-22
Identities = 34/94 (36%), Positives = 49/94 (52%)
Query: 1276 ELLAGKAGLMEGNYKEGT-AFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIY 1334
ELL A ++G T AF G K ++++ L G G+ + G TG E +
Sbjct: 1171 ELLR-LANNLKGGIPVATPAFDGAKEKEIKQMLELAGLPTSGQLKLFDGRTGNEFERPVT 1229
Query: 1335 SGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTG 1368
G +Y KL H+V DK+HARS G ++T+QP G
Sbjct: 1230 VGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG 1263
Score = 91 (37.1 bits), Expect = 7.7e-22, Sum P(5) = 7.7e-22
Identities = 31/102 (30%), Positives = 53/102 (51%)
Query: 187 DIVNHMRQDTIT-NALTAAIQT--GNWTIRRFKMERQGVTQVLS--RLSYISGLGMMTRI 241
D+ M QD I ++AA++ G+ + +F + +++V R+S + G G +TR
Sbjct: 484 DLNELMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISAL-GPGGLTRE 542
Query: 242 NSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLA 283
+ FE R + + +G LCP +TPEG GL+ +LA
Sbjct: 543 RAGFEV-------RDVHPTHYGRLCPIETPEGPNIGLINSLA 577
Score = 79 (32.9 bits), Expect = 7.7e-22, Sum P(5) = 7.7e-22
Identities = 39/127 (30%), Positives = 58/127 (45%)
Query: 971 TNFHKLPAGQNATIAVMSYSGYDIEDALIMNK--ASLDRGFGRCLVYRNSKCVLKQYPNQ 1028
T+ L GQN IA M ++GY+ ED++++++ A DR F + S C+ +
Sbjct: 790 TDLGDLALGQNMRIAFMPWNGYNFEDSILISERVAQEDR-FTTIHIQELS-CIAR----- 842
Query: 1029 THDRILGPL-LEADTRKPVYRHRAL---DQDGIVAPGEQICERQVLVNKSMPTISVSAIS 1084
D LG + AD P AL D+ GIV G ++ +LV K P +
Sbjct: 843 --DTKLGSEEITADI--PNVGESALSKLDESGIVYIGAEVKGGDILVGKVTP----KGET 894
Query: 1085 MATPEYK 1091
TPE K
Sbjct: 895 QLTPEEK 901
Score = 72 (30.4 bits), Expect = 3.6e-21, Sum P(6) = 3.6e-21
Identities = 30/112 (26%), Positives = 50/112 (44%)
Query: 360 ECRLRDLTYSAPITVDIE---YTR----GSQRVVRS-DLVIGRMPIMLQSSKCVLRNKTE 411
EC++R +TYSAP+ V + Y R G+ + ++ ++ +G +P+M + V+ N TE
Sbjct: 84 ECQIRGVTYSAPLRVKLRMVLYDREAAAGTVKDIKEQEVYMGDIPLMTDNGTFVI-NGTE 142
Query: 412 YXXXXXXXXXXXVTMHSQRTSPLLSCKKLRQKRFQTYKKTPVD---DARDFL 460
V R S K L R Y+ + +D D +D L
Sbjct: 143 RVIVSQLHRSPGVFFDHDRGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDAL 194
Score = 55 (24.4 bits), Expect = 3.6e-21, Sum P(6) = 3.6e-21
Identities = 16/61 (26%), Positives = 29/61 (47%)
Query: 482 LAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELKETNLSGVV 541
+AVM + ++ + D +DD D+ GN+R+ G + F R ++E G +
Sbjct: 427 VAVM-KNIIHIRNGFDEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVRERLSLGDL 485
Query: 542 N 542
N
Sbjct: 486 N 486
Score = 45 (20.9 bits), Expect = 1.7e-18, Sum P(6) = 1.7e-18
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 354 RQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQ 400
R+ P LR L YS +D+ + R ++ + LV+ +P L+
Sbjct: 201 RRKLPATIILRALEYSTQEILDLFFERVEFKIKKDTLVMTLVPERLR 247
Score = 37 (18.1 bits), Expect = 7.7e-22, Sum P(5) = 7.7e-22
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 914 LVPYPHHNQAPRNTYQCAMGKQAM 937
L+P+ H+ A R M +QA+
Sbjct: 668 LIPFLEHDDANRALMGANMQRQAV 691
Score = 37 (18.1 bits), Expect = 3.6e-21, Sum P(6) = 3.6e-21
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 757 LVPYPHHNQAPRNTYQCAMGKQAM 780
L+P+ H+ A R M +QA+
Sbjct: 668 LIPFLEHDDANRALMGANMQRQAV 691
>UNIPROTKB|Q9KV30 [details] [associations]
symbol:rpoB "DNA-directed RNA polymerase subunit beta"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006351 GO:GO:0003899
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03043 ProtClustDB:PRK00405 Gene3D:2.30.150.10
PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013 PIR:F82336
RefSeq:NP_229982.1 PDB:3E7H PDBsum:3E7H ProteinModelPortal:Q9KV30
PRIDE:Q9KV30 DNASU:2615094 GeneID:2615094 KEGG:vch:VC0328
PATRIC:20079713 OMA:IGYIYML EvolutionaryTrace:Q9KV30 Uniprot:Q9KV30
Length = 1341
Score = 174 (66.3 bits), Expect = 8.8e-22, Sum P(5) = 8.8e-22
Identities = 34/72 (47%), Positives = 49/72 (68%)
Query: 1211 LIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMT 1270
++K+ L RR + GDK + RHG KGVI I EDMP++E+G DI++NP G PSRM
Sbjct: 1049 IVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVDIVLNPLGVPSRMN 1108
Query: 1271 VGKLIELLAGKA 1282
+G+++E+ G A
Sbjct: 1109 IGQILEVHLGLA 1120
Score = 134 (52.2 bits), Expect = 1.3e-17, Sum P(5) = 1.3e-17
Identities = 29/67 (43%), Positives = 41/67 (61%)
Query: 1119 LIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGLKGCDR 1178
++K+ L RR + GDK + RHG KGVI I EDMP++E+G DI++NP G+
Sbjct: 1049 IVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVDIVLNPLGVPSRMN 1108
Query: 1179 ITEYKEV 1185
I + EV
Sbjct: 1109 IGQILEV 1115
Score = 114 (45.2 bits), Expect = 8.8e-22, Sum P(5) = 8.8e-22
Identities = 23/53 (43%), Positives = 33/53 (62%)
Query: 1316 GKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTG 1368
G+ + G TG+A E + G +Y KL H+V DK+HARS G ++T+QP G
Sbjct: 1207 GQLTLFDGRTGDAFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG 1259
Score = 93 (37.8 bits), Expect = 8.8e-22, Sum P(5) = 8.8e-22
Identities = 31/102 (30%), Positives = 54/102 (52%)
Query: 187 DIVNHMRQDTIT-NALTAAIQT--GNWTIRRFKMERQGVTQVLS--RLSYISGLGMMTRI 241
D+ N M QD I ++AA++ G+ + +F + +++V R+S + G G +TR
Sbjct: 483 DLDNVMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISAL-GPGGLTRE 541
Query: 242 NSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLA 283
+ FE R + + +G LCP +TPEG GL+ +L+
Sbjct: 542 RAGFEV-------RDVHVTHYGRLCPIETPEGPNIGLINSLS 576
Score = 81 (33.6 bits), Expect = 8.8e-22, Sum P(5) = 8.8e-22
Identities = 35/125 (28%), Positives = 56/125 (44%)
Query: 971 TNFHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTH 1030
T+ +L GQN IA M ++GY+ ED++++++ + + + CV +
Sbjct: 789 TDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQDDRFTTIHIQELSCVAR------- 841
Query: 1031 DRILGPL-LEADTRKPVYRHRAL---DQDGIVAPGEQICERQVLVNKSMPTISVSAISMA 1086
D LG + AD P AL D+ GIV G ++ +LV K P +
Sbjct: 842 DTKLGAEEITADI--PNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTP----KGETQL 895
Query: 1087 TPEYK 1091
TPE K
Sbjct: 896 TPEEK 900
Score = 68 (29.0 bits), Expect = 2.5e-20, Sum P(6) = 2.5e-20
Identities = 28/112 (25%), Positives = 50/112 (44%)
Query: 360 ECRLRDLTYSAPITV-------DIEYTRGSQRVVRS-DLVIGRMPIMLQSSKCVLRNKTE 411
EC++R +TYS P+ V D + G+ + ++ ++ +G +P+M ++ V+ N TE
Sbjct: 84 ECQIRGVTYSKPLRVKLRLVIFDKDAPAGTVKDIKEQEVYMGEIPLMTENGTFVI-NGTE 142
Query: 412 YXXXXXXXXXXXVTMHSQRTSPLLSCKKLRQKRFQTYKKTPVD---DARDFL 460
V S + S K L R Y+ + +D D +D L
Sbjct: 143 RVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNL 194
Score = 53 (23.7 bits), Expect = 2.5e-20, Sum P(6) = 2.5e-20
Identities = 11/50 (22%), Positives = 24/50 (48%)
Query: 485 MIRRMVLALSDPDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELKE 534
++++++ + +DD D+ GN+R+ G + F R +KE
Sbjct: 428 VMKKLISIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKE 477
Score = 37 (18.1 bits), Expect = 8.8e-22, Sum P(5) = 8.8e-22
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 757 LVPYPHHNQAPRNTYQCAMGKQAM 780
L+P+ H+ A R M +QA+
Sbjct: 667 LIPFLEHDDANRALMGANMQRQAV 690
Score = 37 (18.1 bits), Expect = 8.8e-22, Sum P(5) = 8.8e-22
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 914 LVPYPHHNQAPRNTYQCAMGKQAM 937
L+P+ H+ A R M +QA+
Sbjct: 667 LIPFLEHDDANRALMGANMQRQAV 690
>TIGR_CMR|VC_0328 [details] [associations]
symbol:VC_0328 "DNA-directed RNA polymerase, beta subunit"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006351 GO:GO:0003899
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03043 ProtClustDB:PRK00405 Gene3D:2.30.150.10
PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013 PIR:F82336
RefSeq:NP_229982.1 PDB:3E7H PDBsum:3E7H ProteinModelPortal:Q9KV30
PRIDE:Q9KV30 DNASU:2615094 GeneID:2615094 KEGG:vch:VC0328
PATRIC:20079713 OMA:IGYIYML EvolutionaryTrace:Q9KV30 Uniprot:Q9KV30
Length = 1341
Score = 174 (66.3 bits), Expect = 8.8e-22, Sum P(5) = 8.8e-22
Identities = 34/72 (47%), Positives = 49/72 (68%)
Query: 1211 LIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMT 1270
++K+ L RR + GDK + RHG KGVI I EDMP++E+G DI++NP G PSRM
Sbjct: 1049 IVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVDIVLNPLGVPSRMN 1108
Query: 1271 VGKLIELLAGKA 1282
+G+++E+ G A
Sbjct: 1109 IGQILEVHLGLA 1120
Score = 134 (52.2 bits), Expect = 1.3e-17, Sum P(5) = 1.3e-17
Identities = 29/67 (43%), Positives = 41/67 (61%)
Query: 1119 LIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGLKGCDR 1178
++K+ L RR + GDK + RHG KGVI I EDMP++E+G DI++NP G+
Sbjct: 1049 IVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVDIVLNPLGVPSRMN 1108
Query: 1179 ITEYKEV 1185
I + EV
Sbjct: 1109 IGQILEV 1115
Score = 114 (45.2 bits), Expect = 8.8e-22, Sum P(5) = 8.8e-22
Identities = 23/53 (43%), Positives = 33/53 (62%)
Query: 1316 GKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTG 1368
G+ + G TG+A E + G +Y KL H+V DK+HARS G ++T+QP G
Sbjct: 1207 GQLTLFDGRTGDAFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG 1259
Score = 93 (37.8 bits), Expect = 8.8e-22, Sum P(5) = 8.8e-22
Identities = 31/102 (30%), Positives = 54/102 (52%)
Query: 187 DIVNHMRQDTIT-NALTAAIQT--GNWTIRRFKMERQGVTQVLS--RLSYISGLGMMTRI 241
D+ N M QD I ++AA++ G+ + +F + +++V R+S + G G +TR
Sbjct: 483 DLDNVMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISAL-GPGGLTRE 541
Query: 242 NSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLA 283
+ FE R + + +G LCP +TPEG GL+ +L+
Sbjct: 542 RAGFEV-------RDVHVTHYGRLCPIETPEGPNIGLINSLS 576
Score = 81 (33.6 bits), Expect = 8.8e-22, Sum P(5) = 8.8e-22
Identities = 35/125 (28%), Positives = 56/125 (44%)
Query: 971 TNFHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTH 1030
T+ +L GQN IA M ++GY+ ED++++++ + + + CV +
Sbjct: 789 TDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQDDRFTTIHIQELSCVAR------- 841
Query: 1031 DRILGPL-LEADTRKPVYRHRAL---DQDGIVAPGEQICERQVLVNKSMPTISVSAISMA 1086
D LG + AD P AL D+ GIV G ++ +LV K P +
Sbjct: 842 DTKLGAEEITADI--PNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTP----KGETQL 895
Query: 1087 TPEYK 1091
TPE K
Sbjct: 896 TPEEK 900
Score = 68 (29.0 bits), Expect = 2.5e-20, Sum P(6) = 2.5e-20
Identities = 28/112 (25%), Positives = 50/112 (44%)
Query: 360 ECRLRDLTYSAPITV-------DIEYTRGSQRVVRS-DLVIGRMPIMLQSSKCVLRNKTE 411
EC++R +TYS P+ V D + G+ + ++ ++ +G +P+M ++ V+ N TE
Sbjct: 84 ECQIRGVTYSKPLRVKLRLVIFDKDAPAGTVKDIKEQEVYMGEIPLMTENGTFVI-NGTE 142
Query: 412 YXXXXXXXXXXXVTMHSQRTSPLLSCKKLRQKRFQTYKKTPVD---DARDFL 460
V S + S K L R Y+ + +D D +D L
Sbjct: 143 RVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNL 194
Score = 53 (23.7 bits), Expect = 2.5e-20, Sum P(6) = 2.5e-20
Identities = 11/50 (22%), Positives = 24/50 (48%)
Query: 485 MIRRMVLALSDPDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELKE 534
++++++ + +DD D+ GN+R+ G + F R +KE
Sbjct: 428 VMKKLISIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKE 477
Score = 37 (18.1 bits), Expect = 8.8e-22, Sum P(5) = 8.8e-22
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 757 LVPYPHHNQAPRNTYQCAMGKQAM 780
L+P+ H+ A R M +QA+
Sbjct: 667 LIPFLEHDDANRALMGANMQRQAV 690
Score = 37 (18.1 bits), Expect = 8.8e-22, Sum P(5) = 8.8e-22
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 914 LVPYPHHNQAPRNTYQCAMGKQAM 937
L+P+ H+ A R M +QA+
Sbjct: 667 LIPFLEHDDANRALMGANMQRQAV 690
>TIGR_CMR|CPS_4769 [details] [associations]
symbol:CPS_4769 "DNA-directed RNA polymerase, beta
subunit" species:167879 "Colwellia psychrerythraea 34H" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
OMA:FMTWEGY RefSeq:YP_271413.1 STRING:Q47UV9 PRIDE:Q47UV9
GeneID:3523343 KEGG:cps:CPS_4769 PATRIC:21472355
BioCyc:CPSY167879:GI48-4775-MONOMER Uniprot:Q47UV9
Length = 1342
Score = 173 (66.0 bits), Expect = 1.2e-21, Sum P(4) = 1.2e-21
Identities = 32/72 (44%), Positives = 48/72 (66%)
Query: 1211 LIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMT 1270
++K+ L R + GDK + RHG KGVI +V EDMP+++ G+ DI++NP G PSRM
Sbjct: 1050 IVKVYLAVKRHIQPGDKMAGRHGNKGVISNVVPVEDMPYDQFGVPVDIVLNPLGVPSRMN 1109
Query: 1271 VGKLIELLAGKA 1282
+G+++E G A
Sbjct: 1110 IGQILETHLGMA 1121
Score = 131 (51.2 bits), Expect = 1.7e-16, Sum P(5) = 1.7e-16
Identities = 24/55 (43%), Positives = 37/55 (67%)
Query: 1119 LIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
++K+ L R + GDK + RHG KGVI +V EDMP+++ G+ DI++NP G+
Sbjct: 1050 IVKVYLAVKRHIQPGDKMAGRHGNKGVISNVVPVEDMPYDQFGVPVDIVLNPLGV 1104
Score = 119 (46.9 bits), Expect = 1.2e-21, Sum P(4) = 1.2e-21
Identities = 29/89 (32%), Positives = 44/89 (49%)
Query: 1285 MEGNYKEGT-----AFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVY 1339
+ GN + G AF G +++E + G+ + G TG E + G +Y
Sbjct: 1172 LAGNLRAGLPIATPAFDGAAEKEIKELFVLADMPQSGQFVLTDGRTGREFERPVTVGYMY 1231
Query: 1340 YQKLKHMVQDKIHARSRGPRVVLTRQPTG 1368
KL H+V DK+HARS G ++T+QP G
Sbjct: 1232 MLKLNHLVDDKMHARSTGSYSLVTQQPLG 1260
Score = 83 (34.3 bits), Expect = 1.2e-21, Sum P(4) = 1.2e-21
Identities = 28/97 (28%), Positives = 51/97 (52%)
Query: 192 MRQDTIT-NALTAAIQT--GNWTIRRFKMERQGVTQVLS--RLSYISGLGMMTRINSQFE 246
M QD I ++AA++ G+ + +F + +++V R+S + G G +TR + FE
Sbjct: 489 MPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISAL-GPGGLTRERAGFE 547
Query: 247 KTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLA 283
R + + +G +CP +TPEG GL+ +L+
Sbjct: 548 V-------RDVHPTHYGRVCPIETPEGPNIGLINSLS 577
Score = 78 (32.5 bits), Expect = 1.2e-21, Sum P(4) = 1.2e-21
Identities = 34/126 (26%), Positives = 59/126 (46%)
Query: 971 TNFHKLPAGQNATIAVMSYSGYDIEDALIMN-KASLDRGFGRCLVYRNSKCVLKQYPNQT 1029
T+ +L GQN IA M ++GY+ ED+++++ + +++ F + + C+ +
Sbjct: 790 TDMGELALGQNMRIAFMPWNGYNFEDSMLLSERVAIEDRFTTIHI-QELTCIAR------ 842
Query: 1030 HDRILGPL-LEADTRKPVYRHRAL---DQDGIVAPGEQICERQVLVNKSMPTISVSAISM 1085
D LG + AD P AL D+ G+V G ++ +LV K P +
Sbjct: 843 -DTKLGSEEITADI--PNVGESALSKLDEAGVVYIGAEVNGGDILVGKVTP----KGETQ 895
Query: 1086 ATPEYK 1091
TPE K
Sbjct: 896 LTPEEK 901
Score = 70 (29.7 bits), Expect = 7.1e-21, Sum P(5) = 7.1e-21
Identities = 19/60 (31%), Positives = 34/60 (56%)
Query: 360 ECRLRDLTYSAPITV-------DIEYTRGSQRVVRS-DLVIGRMPIMLQSSKCVLRNKTE 411
EC++R +TYSAP+ V D E G+ + ++ ++ +G +P+M + V+ N TE
Sbjct: 84 ECQIRGVTYSAPLRVKLRLVVYDKEAAAGTVKDIKEQEVYMGEIPLMTDNGTFVI-NGTE 142
Score = 50 (22.7 bits), Expect = 7.1e-21, Sum P(5) = 7.1e-21
Identities = 11/52 (21%), Positives = 24/52 (46%)
Query: 484 VMIRRMVLALSD-PDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELKE 534
+ + + ++ + D +DD D+ GN+R+ G + F R ++E
Sbjct: 427 ISVMKTLIGIRDGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVRE 478
Score = 48 (22.0 bits), Expect = 5.5e-15, Sum P(3) = 5.5e-15
Identities = 25/79 (31%), Positives = 34/79 (43%)
Query: 101 DETSKLKDSPEIRDKWKLVLSF-LKEKGLVKPHIDSF------DYFINVEIKKLMQANAN 153
DE S L+D R K KL+LS L E L D + D E++++ + N
Sbjct: 963 DELSILEDGIYARTK-KLLLSAGLNESDLTSMSRDKWLTQNLADEGQQAELEQIAEQFDN 1021
Query: 154 IYSDVDPLFYLKYLDIHVG 172
I D D F +K I G
Sbjct: 1022 IKEDFDKKFEVKRRKITQG 1040
Score = 44 (20.5 bits), Expect = 6.6e-17, Sum P(4) = 6.6e-17
Identities = 27/100 (27%), Positives = 39/100 (39%)
Query: 1011 RCLVYRNSKCVLKQYPNQTHDRILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVL 1070
R L Y + +L + + T I G L D R D + GE + E
Sbjct: 211 RALEYSTEE-ILAMFYDTTDYTIKGDKLIMDLIPERLRGETAIFDISIKKGEVLVES--- 266
Query: 1071 VNKSMPTISVSAISMATPEYKEVPVSY-KGSVPS--YLEK 1107
+ + + A+S A E EVP Y G V S Y++K
Sbjct: 267 -GRRITARHIRALSKAKLEKLEVPADYIVGRVLSKAYIDK 305
>TIGR_CMR|CJE_0528 [details] [associations]
symbol:CJE_0528 "DNA-directed RNA polymerase, beta
subunit" species:195099 "Campylobacter jejuni RM1221" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
OMA:FMTWEGY RefSeq:YP_178546.1 ProteinModelPortal:Q5HVY9
STRING:Q5HVY9 GeneID:3231289 KEGG:cjr:CJE0528 PATRIC:20042778
BioCyc:CJEJ195099:GJC0-543-MONOMER Uniprot:Q5HVY9
Length = 1378
Score = 174 (66.3 bits), Expect = 2.6e-21, Sum P(5) = 2.6e-21
Identities = 32/78 (41%), Positives = 50/78 (64%)
Query: 1211 LIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMT 1270
L+K+ + R+ ++GDK + RHG KG++ IV + DMP+ +G DI +NP G PSRM
Sbjct: 1078 LVKVYIATKRKLKVGDKMAGRHGNKGIVSTIVPEVDMPYLPNGKSVDIALNPLGVPSRMN 1137
Query: 1271 VGKLIELLAGKAGLMEGN 1288
+G+++E G GL G+
Sbjct: 1138 IGQILESHLGLVGLRLGD 1155
Score = 128 (50.1 bits), Expect = 2.6e-21, Sum P(5) = 2.6e-21
Identities = 24/53 (45%), Positives = 34/53 (64%)
Query: 1316 GKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTG 1368
GK Y G TGE + ++ G +Y KL H+V +K+HARS GP ++T+QP G
Sbjct: 1239 GKTELYDGRTGEKIAERVHVGCMYMLKLHHLVDEKVHARSTGPYSLVTQQPVG 1291
Score = 125 (49.1 bits), Expect = 3.2e-16, Sum P(5) = 3.2e-16
Identities = 22/55 (40%), Positives = 36/55 (65%)
Query: 1119 LIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
L+K+ + R+ ++GDK + RHG KG++ IV + DMP+ +G DI +NP G+
Sbjct: 1078 LVKVYIATKRKLKVGDKMAGRHGNKGIVSTIVPEVDMPYLPNGKSVDIALNPLGV 1132
Score = 77 (32.2 bits), Expect = 2.6e-21, Sum P(5) = 2.6e-21
Identities = 36/162 (22%), Positives = 71/162 (43%)
Query: 975 KLPAGQNATIAVMSYSGYDIEDALIMNKASL-DRGFGRCLVYRNSKCVLKQYPNQTHDRI 1033
+L G+NA IA M ++GY+ EDA+++++ + + F +Y K + + + I
Sbjct: 804 ELAIGKNALIAFMPWNGYNYEDAIVVSERIIREDTFTSVHIYE--KEIEARELKDGIEEI 861
Query: 1034 LGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKEV 1093
+ + ++ H LD+ GI G I +LV K P V TPE + +
Sbjct: 862 TKDI--PNVKEEDVAH--LDESGIAKIGTHIKPGMILVGKVSPKGEVKP----TPEERLL 913
Query: 1094 PVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDK 1135
+ + K L ++ S + ++ + + + E D+
Sbjct: 914 RAIFGEKAGHVVNKSLYATASLEGVVVDVKIFTKKGYEKDDR 955
Score = 72 (30.4 bits), Expect = 2.6e-21, Sum P(5) = 2.6e-21
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 255 RSLQGSQWGMLCPSDTPEGEACGLVKNLA 283
R + + +G +CP +TPEG+ GL+ L+
Sbjct: 563 RDVHATHYGRICPVETPEGQNIGLINTLS 591
Score = 59 (25.8 bits), Expect = 4.7e-20, Sum P(6) = 4.7e-20
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 499 LDDRDYYGNKRLELAGSLLS 518
+DDRD+ GN+R+ G LL+
Sbjct: 455 IDDRDHLGNRRIRSIGELLA 474
Score = 44 (20.5 bits), Expect = 2.6e-21, Sum P(5) = 2.6e-21
Identities = 13/43 (30%), Positives = 25/43 (58%)
Query: 135 SFDYFINVE-----IKKLMQANANIYSDVDPLFYLKYLDIHVG 172
SFDYF+N++ I+K+ ++ I+ + L L+Y+ +G
Sbjct: 36 SFDYFLNLDNGESGIEKVFKSIFPIHDPQNRLS-LEYVSSEIG 77
Score = 43 (20.2 bits), Expect = 4.7e-20, Sum P(6) = 4.7e-20
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 357 TPHECRLRDLTYSAPITVDIEYT 379
T EC R LTYS + + I T
Sbjct: 82 TIRECMERGLTYSVNLKMKIRLT 104
>UNIPROTKB|P60281 [details] [associations]
symbol:rpoB "DNA-directed RNA polymerase subunit beta"
species:246196 "Mycobacterium smegmatis str. MC2 155" [GO:0005515
"protein binding" evidence=IPI] HAMAP:MF_01321 InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR010243
InterPro:IPR014724 InterPro:IPR015712 InterPro:IPR019462
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF10385 PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0003677
EMBL:CP000480 EMBL:CP001663 GenomeReviews:CP000480_GR GO:GO:0006351
GO:GO:0003899 eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
HOGENOM:HOG000218611 OMA:FMTWEGY EMBL:AJ605718
RefSeq:YP_006566096.1 RefSeq:YP_885753.1 ProteinModelPortal:P60281
IntAct:P60281 STRING:P60281 EnsemblBacteria:EBMYCT00000043175
GeneID:13429143 GeneID:4535217 KEGG:msm:MSMEG_1367 PATRIC:18075189
BioCyc:MSME246196:GJ4Y-1367-MONOMER Uniprot:P60281
Length = 1169
Score = 175 (66.7 bits), Expect = 1.6e-20, Sum P(4) = 1.6e-20
Identities = 63/201 (31%), Positives = 95/201 (47%)
Query: 1105 LEKVLVSSNSEDAFLIKMLLRQTRR--PEIGDKFSSRHGQKGV--IGLIVEQEDM----- 1155
L + + + DA K+ + R P + D+ + ++G+ IG V D+
Sbjct: 738 LTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIVRIGAEVRDGDILVGKV 797
Query: 1156 -PFNESGICPD--IIMNPHGLKGCD-RITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAF- 1210
P E+ + P+ ++ G K + R T K VP G V +V S +D
Sbjct: 798 TPKGETELTPEERLLRAIFGEKAREVRDTSLK-VPHGESGKVIGI--RVF-SREDDDELP 853
Query: 1211 -----LIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGY 1265
L+++ + Q R+ GDK + RHG KGVIG I+ EDMPF G DII+N HG
Sbjct: 854 AGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLPDGTPVDIILNTHGV 913
Query: 1266 PSRMTVGKLIELLAG---KAG 1283
P RM +G+++E G KAG
Sbjct: 914 PRRMNIGQILETHLGWVAKAG 934
Score = 157 (60.3 bits), Expect = 1.2e-18, Sum P(4) = 1.2e-18
Identities = 60/220 (27%), Positives = 99/220 (45%)
Query: 975 KLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRIL 1034
++ G+N +A+M + G++ EDA+I++ ++ + ++++ D L
Sbjct: 703 EMALGKNLLVAIMPWEGHNYEDAIILSNRLVEEDV-------LTSIHIEEHEIDARDTKL 755
Query: 1035 GPLLEADTRK-PVYRHRAL---DQDGIVAPGEQICERQVLVNKSMPTISVSAI------- 1083
G E TR P L D+ GIV G ++ + +LV K P
Sbjct: 756 GA--EEITRDIPNVSDEVLADLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLR 813
Query: 1084 SMATPEYKEV-PVSYK---GSVPSYLEKVLVSSNSEDAF------LIKMLLRQTRRPEIG 1133
++ + +EV S K G + + S +D L+++ + Q R+ G
Sbjct: 814 AIFGEKAREVRDTSLKVPHGESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDG 873
Query: 1134 DKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
DK + RHG KGVIG I+ EDMPF G DII+N HG+
Sbjct: 874 DKLAGRHGNKGVIGKILPVEDMPFLPDGTPVDIILNTHGV 913
Score = 120 (47.3 bits), Expect = 1.6e-20, Sum P(4) = 1.6e-20
Identities = 24/53 (45%), Positives = 32/53 (60%)
Query: 1316 GKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTG 1368
GK + G +GE + G +Y KL H+V DKIHARS GP ++T+QP G
Sbjct: 997 GKSTLFDGRSGEPFPYPVTVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLG 1049
Score = 80 (33.2 bits), Expect = 1.6e-20, Sum P(4) = 1.6e-20
Identities = 17/53 (32%), Positives = 31/53 (58%)
Query: 360 ECRLRDLTYSAPITVDIEYTRGSQRVVRSDLV-IGRMPIMLQSSKCVLRNKTE 411
EC+ +D+TY+AP+ V E+ + ++S V +G P+M + ++ N TE
Sbjct: 112 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFII-NGTE 163
Score = 74 (31.1 bits), Expect = 3.6e-18, Sum P(3) = 3.6e-18
Identities = 19/71 (26%), Positives = 40/71 (56%)
Query: 222 VTQVLSRLSYISGLGMMTRINSQFEK--TRKVSG--PRSLQGSQWGMLCPSDTPEGEACG 277
++Q + + + +SGL R+++ +R+ +G R + S +G +CP +TPEG G
Sbjct: 427 LSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPNIG 486
Query: 278 LVKNLALMTHI 288
L+ +L++ +
Sbjct: 487 LIGSLSVYARV 497
Score = 64 (27.6 bits), Expect = 1.6e-20, Sum P(4) = 1.6e-20
Identities = 20/94 (21%), Positives = 40/94 (42%)
Query: 441 RQKRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLD 500
R R++ KK ++ + SST V + + ++ ++ + + P +D
Sbjct: 301 RVGRYKVNKKLGLNAGKPITSSTLTEEDVVATIEYLVR-LHEGQTSMTVPGGVEVPVEVD 359
Query: 501 DRDYYGNKRLELAGSLLSLMFEDVFKRFNSELKE 534
D D++GN+RL G L+ R ++E
Sbjct: 360 DIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRE 393
>UNIPROTKB|P0A680 [details] [associations]
symbol:rpoB "DNA-directed RNA polymerase subunit beta"
species:1773 "Mycobacterium tuberculosis" [GO:0005515 "protein
binding" evidence=IPI] [GO:0005618 "cell wall" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0040007 "growth" evidence=IMP] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0005829 GO:GO:0005886 GO:GO:0040007
GO:GO:0005618 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0003677 GO:GO:0046677 GO:GO:0006351
EMBL:BX842574 GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
OMA:FMTWEGY EMBL:L27989 EMBL:U12205 EMBL:L05910 EMBL:AF143771
EMBL:AF146567 EMBL:AF147030 EMBL:AF147031 EMBL:AF147033
EMBL:AF147034 EMBL:S71246 PIR:F70535 RefSeq:NP_215181.1
RefSeq:NP_335107.1 RefSeq:YP_006514009.1 ProteinModelPortal:P0A680
SMR:P0A680 IntAct:P0A680 PRIDE:P0A680
EnsemblBacteria:EBMYCT00000001730 EnsemblBacteria:EBMYCT00000071499
GeneID:13318554 GeneID:888164 GeneID:925979 KEGG:mtc:MT0695
KEGG:mtu:Rv0667 KEGG:mtv:RVBD_0667 PATRIC:18123249
TubercuList:Rv0667 BindingDB:P0A680 ChEMBL:CHEMBL2006
Uniprot:P0A680
Length = 1178
Score = 177 (67.4 bits), Expect = 2.5e-20, Sum P(4) = 2.5e-20
Identities = 62/195 (31%), Positives = 92/195 (47%)
Query: 1105 LEKVLVSSNSEDAFLIKMLLRQTRR--PEIGDKFSSRHGQKGV--IGLIVEQEDM----- 1155
L + + + DA K+ + R P I D+ + ++G+ IG V D+
Sbjct: 747 LTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDERGIVRIGAEVRDGDILVGKV 806
Query: 1156 -PFNESGICPD--IIMNPHGLKGCD-RITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAF- 1210
P E+ + P+ ++ G K + R T K VP G V +V S ED
Sbjct: 807 TPKGETELTPEERLLRAIFGEKAREVRDTSLK-VPHGESGKVIGI--RVF-SREDEDELP 862
Query: 1211 -----LIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGY 1265
L+++ + Q R+ GDK + RHG KGVIG I+ EDMPF G DII+N HG
Sbjct: 863 AGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLADGTPVDIILNTHGV 922
Query: 1266 PSRMTVGKLIELLAG 1280
P RM +G+++E G
Sbjct: 923 PRRMNIGQILETHLG 937
Score = 161 (61.7 bits), Expect = 1.2e-18, Sum P(4) = 1.2e-18
Identities = 62/224 (27%), Positives = 101/224 (45%)
Query: 971 TNFHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTH 1030
T+ ++ G+N +A+M + G++ EDA+I++ ++ + ++++
Sbjct: 708 TDDGEMALGKNLLVAIMPWEGHNYEDAIILSNRLVEEDV-------LTSIHIEEHEIDAR 760
Query: 1031 DRILGPLLEADTRK-PVYRHRAL---DQDGIVAPGEQICERQVLVNKSMPTISVSAI--- 1083
D LG E TR P L D+ GIV G ++ + +LV K P
Sbjct: 761 DTKLGA--EEITRDIPNISDEVLADLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEE 818
Query: 1084 ----SMATPEYKEV-PVSYK---GSVPSYLEKVLVSSNSEDAF------LIKMLLRQTRR 1129
++ + +EV S K G + + S ED L+++ + Q R+
Sbjct: 819 RLLRAIFGEKAREVRDTSLKVPHGESGKVIGIRVFSREDEDELPAGVNELVRVYVAQKRK 878
Query: 1130 PEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
GDK + RHG KGVIG I+ EDMPF G DII+N HG+
Sbjct: 879 ISDGDKLAGRHGNKGVIGKILPVEDMPFLADGTPVDIILNTHGV 922
Score = 122 (48.0 bits), Expect = 2.5e-20, Sum P(4) = 2.5e-20
Identities = 24/53 (45%), Positives = 33/53 (62%)
Query: 1316 GKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTG 1368
GK + + G +GE + G +Y KL H+V DKIHARS GP ++T+QP G
Sbjct: 1006 GKAMLFDGRSGEPFPYPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLG 1058
Score = 80 (33.2 bits), Expect = 2.5e-20, Sum P(4) = 2.5e-20
Identities = 17/53 (32%), Positives = 31/53 (58%)
Query: 360 ECRLRDLTYSAPITVDIEYTRGSQRVVRSDLV-IGRMPIMLQSSKCVLRNKTE 411
EC+ +D+TY+AP+ V E+ + ++S V +G P+M + ++ N TE
Sbjct: 121 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFII-NGTE 172
Score = 74 (31.1 bits), Expect = 1.4e-18, Sum P(3) = 1.4e-18
Identities = 19/71 (26%), Positives = 40/71 (56%)
Query: 222 VTQVLSRLSYISGLGMMTRINSQFEK--TRKVSG--PRSLQGSQWGMLCPSDTPEGEACG 277
++Q + + + +SGL R+++ +R+ +G R + S +G +CP +TPEG G
Sbjct: 436 LSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPNIG 495
Query: 278 LVKNLALMTHI 288
L+ +L++ +
Sbjct: 496 LIGSLSVYARV 506
Score = 58 (25.5 bits), Expect = 2.5e-20, Sum P(4) = 2.5e-20
Identities = 20/94 (21%), Positives = 37/94 (39%)
Query: 441 RQKRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLD 500
R R++ KK + SST V + + ++ ++ + + P D
Sbjct: 310 RVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVR-LHEGQTTMTVPGGVEVPVETD 368
Query: 501 DRDYYGNKRLELAGSLLSLMFEDVFKRFNSELKE 534
D D++GN+RL G L+ R ++E
Sbjct: 369 DIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRE 402
>TIGR_CMR|NSE_0678 [details] [associations]
symbol:NSE_0678 "DNA-directed RNA polymerase, beta
subunit" species:222891 "Neorickettsia sennetsu str. Miyayama"
[GO:0000345 "cytosolic DNA-directed RNA polymerase complex"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
OMA:FMTWEGY RefSeq:YP_506556.1 ProteinModelPortal:Q2GD90
STRING:Q2GD90 GeneID:3931355 KEGG:nse:NSE_0678 PATRIC:22681375
BioCyc:NSEN222891:GHFU-692-MONOMER Uniprot:Q2GD90
Length = 1358
Score = 165 (63.1 bits), Expect = 3.2e-13, Sum P(3) = 3.2e-13
Identities = 41/86 (47%), Positives = 49/86 (56%)
Query: 1216 LRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLI 1275
++ T +P GDK S RHG KGVI IV EDMP+ G DII+NP G PSRM VG+++
Sbjct: 1058 VKHTLQP--GDKMSGRHGNKGVISRIVPAEDMPYLADGTPVDIILNPLGVPSRMNVGQIL 1115
Query: 1276 ELLAGKAG----------LMEGNYKE 1291
E G A L EGNY E
Sbjct: 1116 ETHLGWAAYNLGKKISKLLDEGNYSE 1141
Score = 150 (57.9 bits), Expect = 6.3e-20, Sum P(4) = 6.3e-20
Identities = 34/102 (33%), Positives = 54/102 (52%)
Query: 1267 SRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITG 1326
+ MT +++E G G + F G K +++ L+ G + G+++ Y G+TG
Sbjct: 1161 NEMTDAEIVEYSRSLRG---GVPVAASVFEGPKTDEIERLLVLAGKDPSGQEVLYDGVTG 1217
Query: 1327 EALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTG 1368
E + + G Y KL H+V DKIHARS G ++T+QP G
Sbjct: 1218 EKFDRKVTVGCKYMLKLHHLVNDKIHARSIGSYSLITQQPLG 1259
Score = 129 (50.5 bits), Expect = 6.3e-20, Sum P(4) = 6.3e-20
Identities = 34/100 (34%), Positives = 52/100 (52%)
Query: 1124 LRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYK 1183
++ T +P GDK S RHG KGVI IV EDMP+ G DII+NP G+ + +
Sbjct: 1058 VKHTLQP--GDKMSGRHGNKGVISRIVPAEDMPYLADGTPVDIILNPLGVPSRMNVGQIL 1115
Query: 1184 EVPVSYKG-SVPSYLEKVLVSSN-SEDAFLIKMLLRQTRR 1221
E + + ++ + K+L N SE L+ + + R+
Sbjct: 1116 ETHLGWAAYNLGKKISKLLDEGNYSEVKSLVLEIYKNDRK 1155
Score = 83 (34.3 bits), Expect = 6.3e-20, Sum P(4) = 6.3e-20
Identities = 35/122 (28%), Positives = 54/122 (44%)
Query: 975 KLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRIL 1034
+L G+N +A +S+ GY+ ED+++++ + + +CV++ D L
Sbjct: 785 ELALGRNLVVAFLSWRGYNFEDSVVISSNVVRDDLFTSVHLEGFECVVR-------DTRL 837
Query: 1035 GPLLEADTRK-----PVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPE 1089
GP E TR + H LD+ GI G + VLV K P S S TPE
Sbjct: 838 GP--EEITRDVSGVAEEFLH-CLDEFGIACVGANVEAGDVLVGKVTPKSS----SPVTPE 890
Query: 1090 YK 1091
K
Sbjct: 891 EK 892
Score = 75 (31.5 bits), Expect = 6.3e-20, Sum P(4) = 6.3e-20
Identities = 21/81 (25%), Positives = 40/81 (49%)
Query: 212 IRRFKMERQGVTQVLSRLSYISGLGMMTRINSQ----FEKTRKVSGPRSLQGSQWGMLCP 267
IR F M ++Q + + + +S + RI++ + R R + + +G +C
Sbjct: 498 IREFFMS-SALSQFMDQTNPLSEITHKRRISALGPGGLNRGRAGFEVRDVHTTHYGRICA 556
Query: 268 SDTPEGEACGLVKNLALMTHI 288
++TPEG GL+ +LA+ I
Sbjct: 557 TETPEGATIGLINSLAIYAKI 577
Score = 49 (22.3 bits), Expect = 1.2e-16, Sum P(5) = 1.2e-16
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 486 IRRMVLALSDPDMLDDRDYYGNKRLELAGSLLSLMF 521
++ + L + +DD D+ GN+R+ G + F
Sbjct: 425 VKELALLQREVGDVDDIDHLGNRRVRSVGEFMDNQF 460
Score = 38 (18.4 bits), Expect = 1.2e-16, Sum P(5) = 1.2e-16
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 361 CRLRDLTYSAPI 372
C R +TYSAP+
Sbjct: 76 CVERGITYSAPL 87
>UNIPROTKB|P0C501 [details] [associations]
symbol:rpoB "DNA-directed RNA polymerase subunit beta"
species:4530 "Oryza sativa" [GO:0009536 "plastid" evidence=IC]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0009507 GO:GO:0009536 GO:GO:0003677 GO:GO:0006351
EMBL:AY522331 GO:GO:0009295 GO:GO:0003899 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 HOGENOM:HOG000218611
ProteinModelPortal:P0C501 Gramene:P0C501 Genevestigator:P0C501
Uniprot:P0C501
Length = 1075
Score = 249 (92.7 bits), Expect = 1.0e-19, Sum P(3) = 1.0e-19
Identities = 66/204 (32%), Positives = 105/204 (51%)
Query: 1184 EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVE 1243
++P+ +G V ++ + + D ++++ + Q R ++GDK + RHG KG+I I+
Sbjct: 785 KLPIGGRGRV---IDVKWIQRDPLD-IMVRVYILQKREIKVGDKVAGRHGNKGIISKILP 840
Query: 1244 QEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAG-LMEGNYKEGT------AFG 1296
++DMP+ + G D++ NP G PSRM VG++ E G AG L++ +Y+
Sbjct: 841 RQDMPYLQDGTPVDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAPFDERYEQEA 900
Query: 1297 GTKLVDVQ-EELIRHGYN-------YQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQ 1348
KLV + E + N Y GK + G TG+ E + G Y KL H V
Sbjct: 901 SRKLVFSELYEASKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVLIGKSYILKLIHQVD 960
Query: 1349 DKIHARSRGPRVVLTRQPTGRRWK 1372
+KIH RS GP ++T+QP R K
Sbjct: 961 EKIHGRSTGPYSLVTQQPVRGRAK 984
Score = 169 (64.5 bits), Expect = 3.0e-11, Sum P(3) = 3.0e-11
Identities = 56/218 (25%), Positives = 106/218 (48%)
Query: 975 KLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRIL 1034
+L G+N +A M + GY+ EDA+++++ + +Y + +++Y QT
Sbjct: 656 ELALGKNVLVAYMPWEGYNFEDAVLISERLVYED-----IYTSFH--IRKYEIQTDTTSQ 708
Query: 1035 GPLLEADTRKP-VYRH--RALDQDGIVAPGEQICERQVLVNKSMPTIS-----------V 1080
G + P + H R LD++G+V G + +LV K P I+ +
Sbjct: 709 GSAEKITKEIPHLEEHLLRNLDRNGVVKLGSWVETGDILVGKLTPQIASESSYIAEAGLL 768
Query: 1081 SAI-SMATPEYKE----VPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDK 1135
AI + KE +P+ +G V ++ + + D ++++ + Q R ++GDK
Sbjct: 769 RAIFGLEVSTSKETSLKLPIGGRGRV---IDVKWIQRDPLD-IMVRVYILQKREIKVGDK 824
Query: 1136 FSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
+ RHG KG+I I+ ++DMP+ + G D++ NP G+
Sbjct: 825 VAGRHGNKGIISKILPRQDMPYLQDGTPVDMVFNPLGV 862
Score = 68 (29.0 bits), Expect = 1.0e-19, Sum P(3) = 1.0e-19
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 255 RSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHI 288
R + S +G +CP DT EG GL +LA+ I
Sbjct: 415 RDIHPSHYGRICPIDTSEGINVGLTGSLAIHARI 448
Score = 63 (27.2 bits), Expect = 1.0e-19, Sum P(3) = 1.0e-19
Identities = 40/147 (27%), Positives = 64/147 (43%)
Query: 859 VWLGDVKQGVHQLSEEKEPRLLRKFQYFDVRTPYRLRR---LLCWECV----LYNKRFHS 911
V+L + + ++ L R Q V P R R+ + WE + ++ ++ S
Sbjct: 475 VYLSPNRDEYYMIAAGNSLSLNRGIQEEQV-VPARYRQEFLTIAWEQIHVRSIFPFQYFS 533
Query: 912 PG--LVPYPHHNQAPRNTYQCAMGKQAMG------CI---GYNQQNRIDTLMYNLVYAQR 960
G L+P+ HN A R M +QA+ CI G +Q +D+ + V A+R
Sbjct: 534 IGGSLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGTGLERQTALDSRVS--VIAER 591
Query: 961 PMVESKTIRITNFHK-LPAGQNATIAV 986
E K I TN HK L + TI++
Sbjct: 592 ---EGKIIS-TNSHKILLSSSGKTISI 614
Score = 55 (24.4 bits), Expect = 6.8e-19, Sum P(3) = 6.8e-19
Identities = 24/72 (33%), Positives = 34/72 (47%)
Query: 757 LVPYPHHNQAPRNTYQCAMGKQAMG------CI---GYNQQNRIDTLMYNLVYAQRPMVE 807
L+P+ HN A R M +QA+ CI G +Q +D+ + V A+R E
Sbjct: 538 LIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGTGLERQTALDSRVS--VIAER---E 592
Query: 808 SKTIRITNFHKL 819
K I TN HK+
Sbjct: 593 GKIIS-TNSHKI 603
Score = 53 (23.7 bits), Expect = 9.9e-17, Sum P(2) = 9.9e-17
Identities = 15/89 (16%), Positives = 35/89 (39%)
Query: 154 IYSDVDPLFYLKYLDIHVGXXXXXXXXXXXXQFDIVNHMRQDTITNA-LTAAIQTGNWTI 212
+Y D+ F+++ +I + + H+ + + N ++ G+W
Sbjct: 686 VYEDIYTSFHIRKYEIQTDTTSQGSAEKITKE---IPHLEEHLLRNLDRNGVVKLGSWVE 742
Query: 213 RRFKMERQGVTQVLSRLSYISGLGMMTRI 241
+ + Q+ S SYI+ G++ I
Sbjct: 743 TGDILVGKLTPQIASESSYIAEAGLLRAI 771
Score = 41 (19.5 bits), Expect = 6.0e-17, Sum P(3) = 6.0e-17
Identities = 25/102 (24%), Positives = 43/102 (42%)
Query: 437 CKKLRQKRFQTYKKTPVDD-ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSD 495
C++L++K FQ +K + R ++ IP N F + LA + + +
Sbjct: 242 CEELQKKFFQ--QKCELGRIGRRNMNRRLNLDIPQ-NSTFLLPRDVLAATDHLIGMKF-E 297
Query: 496 PDMLDDRD--YYGNKRLELAGSLLSLMFEDVFKRFNSELKET 535
+LDD D + NKR+ LL F R +++T
Sbjct: 298 TGILDDDDMNHLKNKRIRSVADLLQDQFGLALGRLQHAVQKT 339
Score = 41 (19.5 bits), Expect = 1.8e-15, Sum P(2) = 1.8e-15
Identities = 12/49 (24%), Positives = 23/49 (46%)
Query: 83 NWLGTVKAVHGTYLTMVTDETSKLKDSPEIRDKWKLVLSFLKEKGLVKP 131
+W+ T + G + E+S + ++ +R + L +S KE L P
Sbjct: 739 SWVETGDILVGKLTPQIASESSYIAEAGLLRAIFGLEVSTSKETSLKLP 787
Score = 39 (18.8 bits), Expect = 3.0e-17, Sum P(3) = 3.0e-17
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 860 WLGDVKQGVHQLSEEKEPRLLRKFQY 885
W G V+ +++SE+ + + R+ Y
Sbjct: 451 WWGSVESPFYEISEKAKKKKERQVVY 476
>UNIPROTKB|P0C502 [details] [associations]
symbol:rpoB "DNA-directed RNA polymerase subunit beta"
species:39946 "Oryza sativa Indica Group" [GO:0009536 "plastid"
evidence=IC] HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0009507 GO:GO:0009536 GO:GO:0003677 GO:GO:0006351
EMBL:AY522329 GO:GO:0009295 GO:GO:0003899 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 ProtClustDB:CHL00001
RefSeq:YP_654206.1 ProteinModelPortal:P0C502 GeneID:4126922
Gramene:P0C502 Uniprot:P0C502
Length = 1075
Score = 249 (92.7 bits), Expect = 1.0e-19, Sum P(3) = 1.0e-19
Identities = 66/204 (32%), Positives = 105/204 (51%)
Query: 1184 EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVE 1243
++P+ +G V ++ + + D ++++ + Q R ++GDK + RHG KG+I I+
Sbjct: 785 KLPIGGRGRV---IDVKWIQRDPLD-IMVRVYILQKREIKVGDKVAGRHGNKGIISKILP 840
Query: 1244 QEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAG-LMEGNYKEGT------AFG 1296
++DMP+ + G D++ NP G PSRM VG++ E G AG L++ +Y+
Sbjct: 841 RQDMPYLQDGTPVDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAPFDERYEQEA 900
Query: 1297 GTKLVDVQ-EELIRHGYN-------YQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQ 1348
KLV + E + N Y GK + G TG+ E + G Y KL H V
Sbjct: 901 SRKLVFSELYEASKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVLIGKSYILKLIHQVD 960
Query: 1349 DKIHARSRGPRVVLTRQPTGRRWK 1372
+KIH RS GP ++T+QP R K
Sbjct: 961 EKIHGRSTGPYSLVTQQPVRGRAK 984
Score = 169 (64.5 bits), Expect = 3.0e-11, Sum P(3) = 3.0e-11
Identities = 56/218 (25%), Positives = 106/218 (48%)
Query: 975 KLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRIL 1034
+L G+N +A M + GY+ EDA+++++ + +Y + +++Y QT
Sbjct: 656 ELALGKNVLVAYMPWEGYNFEDAVLISERLVYED-----IYTSFH--IRKYEIQTDTTSQ 708
Query: 1035 GPLLEADTRKP-VYRH--RALDQDGIVAPGEQICERQVLVNKSMPTIS-----------V 1080
G + P + H R LD++G+V G + +LV K P I+ +
Sbjct: 709 GSAEKITKEIPHLEEHLLRNLDRNGVVKLGSWVETGDILVGKLTPQIASESSYIAEAGLL 768
Query: 1081 SAI-SMATPEYKE----VPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDK 1135
AI + KE +P+ +G V ++ + + D ++++ + Q R ++GDK
Sbjct: 769 RAIFGLEVSTSKETSLKLPIGGRGRV---IDVKWIQRDPLD-IMVRVYILQKREIKVGDK 824
Query: 1136 FSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
+ RHG KG+I I+ ++DMP+ + G D++ NP G+
Sbjct: 825 VAGRHGNKGIISKILPRQDMPYLQDGTPVDMVFNPLGV 862
Score = 68 (29.0 bits), Expect = 1.0e-19, Sum P(3) = 1.0e-19
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 255 RSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHI 288
R + S +G +CP DT EG GL +LA+ I
Sbjct: 415 RDIHPSHYGRICPIDTSEGINVGLTGSLAIHARI 448
Score = 63 (27.2 bits), Expect = 1.0e-19, Sum P(3) = 1.0e-19
Identities = 40/147 (27%), Positives = 64/147 (43%)
Query: 859 VWLGDVKQGVHQLSEEKEPRLLRKFQYFDVRTPYRLRR---LLCWECV----LYNKRFHS 911
V+L + + ++ L R Q V P R R+ + WE + ++ ++ S
Sbjct: 475 VYLSPNRDEYYMIAAGNSLSLNRGIQEEQV-VPARYRQEFLTIAWEQIHVRSIFPFQYFS 533
Query: 912 PG--LVPYPHHNQAPRNTYQCAMGKQAMG------CI---GYNQQNRIDTLMYNLVYAQR 960
G L+P+ HN A R M +QA+ CI G +Q +D+ + V A+R
Sbjct: 534 IGGSLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGTGLERQTALDSRVS--VIAER 591
Query: 961 PMVESKTIRITNFHK-LPAGQNATIAV 986
E K I TN HK L + TI++
Sbjct: 592 ---EGKIIS-TNSHKILLSSSGKTISI 614
Score = 55 (24.4 bits), Expect = 6.8e-19, Sum P(3) = 6.8e-19
Identities = 24/72 (33%), Positives = 34/72 (47%)
Query: 757 LVPYPHHNQAPRNTYQCAMGKQAMG------CI---GYNQQNRIDTLMYNLVYAQRPMVE 807
L+P+ HN A R M +QA+ CI G +Q +D+ + V A+R E
Sbjct: 538 LIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGTGLERQTALDSRVS--VIAER---E 592
Query: 808 SKTIRITNFHKL 819
K I TN HK+
Sbjct: 593 GKIIS-TNSHKI 603
Score = 53 (23.7 bits), Expect = 9.9e-17, Sum P(2) = 9.9e-17
Identities = 15/89 (16%), Positives = 35/89 (39%)
Query: 154 IYSDVDPLFYLKYLDIHVGXXXXXXXXXXXXQFDIVNHMRQDTITNA-LTAAIQTGNWTI 212
+Y D+ F+++ +I + + H+ + + N ++ G+W
Sbjct: 686 VYEDIYTSFHIRKYEIQTDTTSQGSAEKITKE---IPHLEEHLLRNLDRNGVVKLGSWVE 742
Query: 213 RRFKMERQGVTQVLSRLSYISGLGMMTRI 241
+ + Q+ S SYI+ G++ I
Sbjct: 743 TGDILVGKLTPQIASESSYIAEAGLLRAI 771
Score = 41 (19.5 bits), Expect = 6.0e-17, Sum P(3) = 6.0e-17
Identities = 25/102 (24%), Positives = 43/102 (42%)
Query: 437 CKKLRQKRFQTYKKTPVDD-ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSD 495
C++L++K FQ +K + R ++ IP N F + LA + + +
Sbjct: 242 CEELQKKFFQ--QKCELGRIGRRNMNRRLNLDIPQ-NSTFLLPRDVLAATDHLIGMKF-E 297
Query: 496 PDMLDDRD--YYGNKRLELAGSLLSLMFEDVFKRFNSELKET 535
+LDD D + NKR+ LL F R +++T
Sbjct: 298 TGILDDDDMNHLKNKRIRSVADLLQDQFGLALGRLQHAVQKT 339
Score = 41 (19.5 bits), Expect = 1.8e-15, Sum P(2) = 1.8e-15
Identities = 12/49 (24%), Positives = 23/49 (46%)
Query: 83 NWLGTVKAVHGTYLTMVTDETSKLKDSPEIRDKWKLVLSFLKEKGLVKP 131
+W+ T + G + E+S + ++ +R + L +S KE L P
Sbjct: 739 SWVETGDILVGKLTPQIASESSYIAEAGLLRAIFGLEVSTSKETSLKLP 787
Score = 39 (18.8 bits), Expect = 3.0e-17, Sum P(3) = 3.0e-17
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 860 WLGDVKQGVHQLSEEKEPRLLRKFQY 885
W G V+ +++SE+ + + R+ Y
Sbjct: 451 WWGSVESPFYEISEKAKKKKERQVVY 476
>UNIPROTKB|P0C503 [details] [associations]
symbol:rpoB "DNA-directed RNA polymerase subunit beta"
species:39947 "Oryza sativa Japonica Group" [GO:0009536 "plastid"
evidence=IC] HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0009507 GO:GO:0009536 GO:GO:0003677 GO:GO:0006351 EMBL:X15901
EMBL:AY522330 GenomeReviews:AY522330_GR GO:GO:0009295 GO:GO:0003899
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03043 ProtClustDB:CHL00001 PIR:JQ0213 RefSeq:NP_039373.1
ProteinModelPortal:P0C503 STRING:P0C503
EnsemblPlants:LOC_Osp1g00240.1 GeneID:3131432 KEGG:osa:3131432
Gramene:P0C503 OMA:HFLVSEK Uniprot:P0C503
Length = 1075
Score = 249 (92.7 bits), Expect = 1.0e-19, Sum P(3) = 1.0e-19
Identities = 66/204 (32%), Positives = 105/204 (51%)
Query: 1184 EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVE 1243
++P+ +G V ++ + + D ++++ + Q R ++GDK + RHG KG+I I+
Sbjct: 785 KLPIGGRGRV---IDVKWIQRDPLD-IMVRVYILQKREIKVGDKVAGRHGNKGIISKILP 840
Query: 1244 QEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAG-LMEGNYKEGT------AFG 1296
++DMP+ + G D++ NP G PSRM VG++ E G AG L++ +Y+
Sbjct: 841 RQDMPYLQDGTPVDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAPFDERYEQEA 900
Query: 1297 GTKLVDVQ-EELIRHGYN-------YQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQ 1348
KLV + E + N Y GK + G TG+ E + G Y KL H V
Sbjct: 901 SRKLVFSELYEASKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVLIGKSYILKLIHQVD 960
Query: 1349 DKIHARSRGPRVVLTRQPTGRRWK 1372
+KIH RS GP ++T+QP R K
Sbjct: 961 EKIHGRSTGPYSLVTQQPVRGRAK 984
Score = 169 (64.5 bits), Expect = 3.0e-11, Sum P(3) = 3.0e-11
Identities = 56/218 (25%), Positives = 106/218 (48%)
Query: 975 KLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRIL 1034
+L G+N +A M + GY+ EDA+++++ + +Y + +++Y QT
Sbjct: 656 ELALGKNVLVAYMPWEGYNFEDAVLISERLVYED-----IYTSFH--IRKYEIQTDTTSQ 708
Query: 1035 GPLLEADTRKP-VYRH--RALDQDGIVAPGEQICERQVLVNKSMPTIS-----------V 1080
G + P + H R LD++G+V G + +LV K P I+ +
Sbjct: 709 GSAEKITKEIPHLEEHLLRNLDRNGVVKLGSWVETGDILVGKLTPQIASESSYIAEAGLL 768
Query: 1081 SAI-SMATPEYKE----VPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDK 1135
AI + KE +P+ +G V ++ + + D ++++ + Q R ++GDK
Sbjct: 769 RAIFGLEVSTSKETSLKLPIGGRGRV---IDVKWIQRDPLD-IMVRVYILQKREIKVGDK 824
Query: 1136 FSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
+ RHG KG+I I+ ++DMP+ + G D++ NP G+
Sbjct: 825 VAGRHGNKGIISKILPRQDMPYLQDGTPVDMVFNPLGV 862
Score = 68 (29.0 bits), Expect = 1.0e-19, Sum P(3) = 1.0e-19
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 255 RSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHI 288
R + S +G +CP DT EG GL +LA+ I
Sbjct: 415 RDIHPSHYGRICPIDTSEGINVGLTGSLAIHARI 448
Score = 63 (27.2 bits), Expect = 1.0e-19, Sum P(3) = 1.0e-19
Identities = 40/147 (27%), Positives = 64/147 (43%)
Query: 859 VWLGDVKQGVHQLSEEKEPRLLRKFQYFDVRTPYRLRR---LLCWECV----LYNKRFHS 911
V+L + + ++ L R Q V P R R+ + WE + ++ ++ S
Sbjct: 475 VYLSPNRDEYYMIAAGNSLSLNRGIQEEQV-VPARYRQEFLTIAWEQIHVRSIFPFQYFS 533
Query: 912 PG--LVPYPHHNQAPRNTYQCAMGKQAMG------CI---GYNQQNRIDTLMYNLVYAQR 960
G L+P+ HN A R M +QA+ CI G +Q +D+ + V A+R
Sbjct: 534 IGGSLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGTGLERQTALDSRVS--VIAER 591
Query: 961 PMVESKTIRITNFHK-LPAGQNATIAV 986
E K I TN HK L + TI++
Sbjct: 592 ---EGKIIS-TNSHKILLSSSGKTISI 614
Score = 55 (24.4 bits), Expect = 6.8e-19, Sum P(3) = 6.8e-19
Identities = 24/72 (33%), Positives = 34/72 (47%)
Query: 757 LVPYPHHNQAPRNTYQCAMGKQAMG------CI---GYNQQNRIDTLMYNLVYAQRPMVE 807
L+P+ HN A R M +QA+ CI G +Q +D+ + V A+R E
Sbjct: 538 LIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGTGLERQTALDSRVS--VIAER---E 592
Query: 808 SKTIRITNFHKL 819
K I TN HK+
Sbjct: 593 GKIIS-TNSHKI 603
Score = 53 (23.7 bits), Expect = 9.9e-17, Sum P(2) = 9.9e-17
Identities = 15/89 (16%), Positives = 35/89 (39%)
Query: 154 IYSDVDPLFYLKYLDIHVGXXXXXXXXXXXXQFDIVNHMRQDTITNA-LTAAIQTGNWTI 212
+Y D+ F+++ +I + + H+ + + N ++ G+W
Sbjct: 686 VYEDIYTSFHIRKYEIQTDTTSQGSAEKITKE---IPHLEEHLLRNLDRNGVVKLGSWVE 742
Query: 213 RRFKMERQGVTQVLSRLSYISGLGMMTRI 241
+ + Q+ S SYI+ G++ I
Sbjct: 743 TGDILVGKLTPQIASESSYIAEAGLLRAI 771
Score = 41 (19.5 bits), Expect = 6.0e-17, Sum P(3) = 6.0e-17
Identities = 25/102 (24%), Positives = 43/102 (42%)
Query: 437 CKKLRQKRFQTYKKTPVDD-ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSD 495
C++L++K FQ +K + R ++ IP N F + LA + + +
Sbjct: 242 CEELQKKFFQ--QKCELGRIGRRNMNRRLNLDIPQ-NSTFLLPRDVLAATDHLIGMKF-E 297
Query: 496 PDMLDDRD--YYGNKRLELAGSLLSLMFEDVFKRFNSELKET 535
+LDD D + NKR+ LL F R +++T
Sbjct: 298 TGILDDDDMNHLKNKRIRSVADLLQDQFGLALGRLQHAVQKT 339
Score = 41 (19.5 bits), Expect = 1.8e-15, Sum P(2) = 1.8e-15
Identities = 12/49 (24%), Positives = 23/49 (46%)
Query: 83 NWLGTVKAVHGTYLTMVTDETSKLKDSPEIRDKWKLVLSFLKEKGLVKP 131
+W+ T + G + E+S + ++ +R + L +S KE L P
Sbjct: 739 SWVETGDILVGKLTPQIASESSYIAEAGLLRAIFGLEVSTSKETSLKLP 787
Score = 39 (18.8 bits), Expect = 3.0e-17, Sum P(3) = 3.0e-17
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 860 WLGDVKQGVHQLSEEKEPRLLRKFQY 885
W G V+ +++SE+ + + R+ Y
Sbjct: 451 WWGSVESPFYEISEKAKKKKERQVVY 476
>UNIPROTKB|Q6ENI4 [details] [associations]
symbol:rpoB "DNA-directed RNA polymerase subunit beta"
species:4536 "Oryza nivara" [GO:0009536 "plastid" evidence=IC]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0009507 GO:GO:0009536 GO:GO:0003677 GO:GO:0006351
EMBL:AP006728 GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 RefSeq:YP_052739.1 ProteinModelPortal:Q6ENI4
GeneID:2885962 Gramene:Q6ENI4 ProtClustDB:CHL00001 Uniprot:Q6ENI4
Length = 1075
Score = 249 (92.7 bits), Expect = 1.0e-19, Sum P(3) = 1.0e-19
Identities = 66/204 (32%), Positives = 105/204 (51%)
Query: 1184 EVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVE 1243
++P+ +G V ++ + + D ++++ + Q R ++GDK + RHG KG+I I+
Sbjct: 785 KLPIGGRGRV---IDVKWIQRDPLD-IMVRVYILQKREIKVGDKVAGRHGNKGIISKILP 840
Query: 1244 QEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAG-LMEGNYKEGT------AFG 1296
++DMP+ + G D++ NP G PSRM VG++ E G AG L++ +Y+
Sbjct: 841 RQDMPYLQDGTPVDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAPFDERYEQEA 900
Query: 1297 GTKLVDVQ-EELIRHGYN-------YQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQ 1348
KLV + E + N Y GK + G TG+ E + G Y KL H V
Sbjct: 901 SRKLVFSELYEASKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVLIGKSYILKLIHQVD 960
Query: 1349 DKIHARSRGPRVVLTRQPTGRRWK 1372
+KIH RS GP ++T+QP R K
Sbjct: 961 EKIHGRSTGPYSLVTQQPVRGRAK 984
Score = 169 (64.5 bits), Expect = 3.0e-11, Sum P(3) = 3.0e-11
Identities = 56/218 (25%), Positives = 106/218 (48%)
Query: 975 KLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRIL 1034
+L G+N +A M + GY+ EDA+++++ + +Y + +++Y QT
Sbjct: 656 ELALGKNVLVAYMPWEGYNFEDAVLISERLVYED-----IYTSFH--IRKYEIQTDTTSQ 708
Query: 1035 GPLLEADTRKP-VYRH--RALDQDGIVAPGEQICERQVLVNKSMPTIS-----------V 1080
G + P + H R LD++G+V G + +LV K P I+ +
Sbjct: 709 GSAEKITKEIPHLEEHLLRNLDRNGVVKLGSWVETGDILVGKLTPQIASESSYIAEAGLL 768
Query: 1081 SAI-SMATPEYKE----VPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDK 1135
AI + KE +P+ +G V ++ + + D ++++ + Q R ++GDK
Sbjct: 769 RAIFGLEVSTSKETSLKLPIGGRGRV---IDVKWIQRDPLD-IMVRVYILQKREIKVGDK 824
Query: 1136 FSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
+ RHG KG+I I+ ++DMP+ + G D++ NP G+
Sbjct: 825 VAGRHGNKGIISKILPRQDMPYLQDGTPVDMVFNPLGV 862
Score = 68 (29.0 bits), Expect = 1.0e-19, Sum P(3) = 1.0e-19
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 255 RSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHI 288
R + S +G +CP DT EG GL +LA+ I
Sbjct: 415 RDIHPSHYGRICPIDTSEGINVGLTGSLAIHARI 448
Score = 63 (27.2 bits), Expect = 1.0e-19, Sum P(3) = 1.0e-19
Identities = 40/147 (27%), Positives = 64/147 (43%)
Query: 859 VWLGDVKQGVHQLSEEKEPRLLRKFQYFDVRTPYRLRR---LLCWECV----LYNKRFHS 911
V+L + + ++ L R Q V P R R+ + WE + ++ ++ S
Sbjct: 475 VYLSPNRDEYYMIAAGNSLSLNRGIQEEQV-VPARYRQEFLTIAWEQIHVRSIFPFQYFS 533
Query: 912 PG--LVPYPHHNQAPRNTYQCAMGKQAMG------CI---GYNQQNRIDTLMYNLVYAQR 960
G L+P+ HN A R M +QA+ CI G +Q +D+ + V A+R
Sbjct: 534 IGGSLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGTGLERQTALDSRVS--VIAER 591
Query: 961 PMVESKTIRITNFHK-LPAGQNATIAV 986
E K I TN HK L + TI++
Sbjct: 592 ---EGKIIS-TNSHKILLSSSGKTISI 614
Score = 55 (24.4 bits), Expect = 6.8e-19, Sum P(3) = 6.8e-19
Identities = 24/72 (33%), Positives = 34/72 (47%)
Query: 757 LVPYPHHNQAPRNTYQCAMGKQAMG------CI---GYNQQNRIDTLMYNLVYAQRPMVE 807
L+P+ HN A R M +QA+ CI G +Q +D+ + V A+R E
Sbjct: 538 LIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGTGLERQTALDSRVS--VIAER---E 592
Query: 808 SKTIRITNFHKL 819
K I TN HK+
Sbjct: 593 GKIIS-TNSHKI 603
Score = 53 (23.7 bits), Expect = 9.9e-17, Sum P(2) = 9.9e-17
Identities = 15/89 (16%), Positives = 35/89 (39%)
Query: 154 IYSDVDPLFYLKYLDIHVGXXXXXXXXXXXXQFDIVNHMRQDTITNA-LTAAIQTGNWTI 212
+Y D+ F+++ +I + + H+ + + N ++ G+W
Sbjct: 686 VYEDIYTSFHIRKYEIQTDTTSQGSAEKITKE---IPHLEEHLLRNLDRNGVVKLGSWVE 742
Query: 213 RRFKMERQGVTQVLSRLSYISGLGMMTRI 241
+ + Q+ S SYI+ G++ I
Sbjct: 743 TGDILVGKLTPQIASESSYIAEAGLLRAI 771
Score = 41 (19.5 bits), Expect = 6.0e-17, Sum P(3) = 6.0e-17
Identities = 25/102 (24%), Positives = 43/102 (42%)
Query: 437 CKKLRQKRFQTYKKTPVDD-ARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSD 495
C++L++K FQ +K + R ++ IP N F + LA + + +
Sbjct: 242 CEELQKKFFQ--QKCELGRIGRRNMNRRLNLDIPQ-NSTFLLPRDVLAATDHLIGMKF-E 297
Query: 496 PDMLDDRD--YYGNKRLELAGSLLSLMFEDVFKRFNSELKET 535
+LDD D + NKR+ LL F R +++T
Sbjct: 298 TGILDDDDMNHLKNKRIRSVADLLQDQFGLALGRLQHAVQKT 339
Score = 41 (19.5 bits), Expect = 1.8e-15, Sum P(2) = 1.8e-15
Identities = 12/49 (24%), Positives = 23/49 (46%)
Query: 83 NWLGTVKAVHGTYLTMVTDETSKLKDSPEIRDKWKLVLSFLKEKGLVKP 131
+W+ T + G + E+S + ++ +R + L +S KE L P
Sbjct: 739 SWVETGDILVGKLTPQIASESSYIAEAGLLRAIFGLEVSTSKETSLKLP 787
Score = 39 (18.8 bits), Expect = 3.0e-17, Sum P(3) = 3.0e-17
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 860 WLGDVKQGVHQLSEEKEPRLLRKFQY 885
W G V+ +++SE+ + + R+ Y
Sbjct: 451 WWGSVESPFYEISEKAKKKKERQVVY 476
>TIGR_CMR|DET_0603 [details] [associations]
symbol:DET_0603 "DNA-directed RNA polymerase, beta
subunit" species:243164 "Dehalococcoides ethenogenes 195"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 OMA:FMTWEGY
RefSeq:YP_181345.1 ProteinModelPortal:Q3Z8V4 STRING:Q3Z8V4
PRIDE:Q3Z8V4 GeneID:3230060 KEGG:det:DET0603 PATRIC:21608277
BioCyc:DETH243164:GJNF-604-MONOMER Uniprot:Q3Z8V4
Length = 1272
Score = 259 (96.2 bits), Expect = 1.6e-19, Sum P(4) = 1.6e-19
Identities = 102/417 (24%), Positives = 182/417 (43%)
Query: 975 KLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRIL 1034
+L GQN +A MS+ G++ EDA+I+++ L R ++ + ++ + HD L
Sbjct: 721 ELALGQNCVVAFMSWQGFNYEDAIILSER-LVREDAFTSIH------ITKHELEAHDTKL 773
Query: 1035 GPLLEADTRK-PVYRH---RALDQDGIVAPGEQICERQVLVNKSMPT--ISVSA------ 1082
G E TR P R LD+DGI+ G ++ +LV K P +SA
Sbjct: 774 GG--EEITRDIPNVGEESLRELDEDGIIRIGAEVGPDDILVGKITPKGETELSAEEKLLR 831
Query: 1083 --ISMATPEYKEVPVSYK-GSVPSYLE-KVLVSSNSED--AFL---IKMLLRQTRRPEIG 1133
E K+ + G + +V N +D A + +++ + Q R+ +G
Sbjct: 832 AIFGEKAREVKDTSLRMPHGEWGKVINVRVFSRENGDDLPARVNKWVQVWVAQKRKVSVG 891
Query: 1134 DKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSV 1193
DK + RHG KGVI +I EDMP+ G D+++NP G+ + + E + + G +
Sbjct: 892 DKLAGRHGNKGVISIIAPVEDMPYLPDGTPVDVVLNPIGVPSRMNLGQILETHLGWAGHL 951
Query: 1194 PSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESG 1253
+ V ++D + L R + G S ++ E + + G
Sbjct: 952 LGFRVATPVFDGADDTAIEDALARSWLSAKAGATDMSPENKRPSTDTAKAVEWI--KQQG 1009
Query: 1254 ICPDIIMNP-H-GYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHG 1311
+ + H G +++ ++ + A + G E A+ + + ++
Sbjct: 1010 FDGKKVFDERHPGLAKEVSLKLWLKDMGVDASSLSGAELEKKAYEVSSQSRLPSPIV--- 1066
Query: 1312 YNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTG 1368
GK + G TGE + + G +Y KL H+V+DK+HAR+ GP ++++QP G
Sbjct: 1067 ----GKSVLRDGRTGETFDQPVTVGNMYILKLIHLVEDKVHARATGPYSLISQQPLG 1119
Score = 74 (31.1 bits), Expect = 2.0e-18, Sum P(3) = 2.0e-18
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 255 RSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHI 288
R + S +G +CP +TPEG GL+ +LA + I
Sbjct: 432 RDVHYSHYGRICPIETPEGPNIGLIGSLATYSRI 465
Score = 73 (30.8 bits), Expect = 1.6e-19, Sum P(4) = 1.6e-19
Identities = 18/62 (29%), Positives = 32/62 (51%)
Query: 482 LAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELKETNLSGVV 541
+ +I+R+++ + D DD D+ GN+R+ G L+ F R +E +S +V
Sbjct: 309 IVAIIKRIIMVNNGQDTPDDIDHLGNRRIRTVGELVQNQFRIGLVRLERVARE-RMS-IV 366
Query: 542 NL 543
NL
Sbjct: 367 NL 368
Score = 58 (25.5 bits), Expect = 1.6e-19, Sum P(4) = 1.6e-19
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 359 HECRLRDLTYSAPITVDIEYTRGSQRVVRS--DLVIGRMPIM 398
+EC RD TYS P+ V + ++ DL G +P+M
Sbjct: 82 YECTQRDQTYSVPLYVKARLIVKTTGEIKEPFDLFFGDIPLM 123
Score = 37 (18.1 bits), Expect = 1.6e-19, Sum P(4) = 1.6e-19
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 757 LVPYPHHNQAPRNTYQCAMGKQAM 780
L+P+ H+ A R M +QA+
Sbjct: 602 LIPFLEHDDANRALMGANMQRQAV 625
Score = 37 (18.1 bits), Expect = 1.6e-19, Sum P(4) = 1.6e-19
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 914 LVPYPHHNQAPRNTYQCAMGKQAM 937
L+P+ H+ A R M +QA+
Sbjct: 602 LIPFLEHDDANRALMGANMQRQAV 625
>UNIPROTKB|P0A8V2 [details] [associations]
symbol:rpoB "RNA polymerase, beta subunit" species:83333
"Escherichia coli K-12" [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016020
"membrane" evidence=IDA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0005737 GO:GO:0016020 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003677 GO:GO:0006351 EMBL:U00006 DrugBank:DB01045 PDB:3IYD
PDBsum:3IYD GO:GO:0003899 EMBL:V00339 PDB:3T72 PDBsum:3T72
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 PDB:3LU0 PDBsum:3LU0 KO:K03043
ProtClustDB:PRK00405 Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3
TIGRFAMs:TIGR02013 OMA:FMTWEGY EMBL:V00340 EMBL:U76222 EMBL:V00341
EMBL:M38292 EMBL:M38293 EMBL:M38287 EMBL:M38304 EMBL:U77436
EMBL:M38303 PIR:F65205 RefSeq:NP_418414.1 RefSeq:YP_491474.1
PDB:3LTI PDB:3TBI PDBsum:3LTI PDBsum:3TBI ProteinModelPortal:P0A8V2
SMR:P0A8V2 DIP:DIP-35777N IntAct:P0A8V2 MINT:MINT-1222430
SWISS-2DPAGE:P0A8V2 PaxDb:P0A8V2 PRIDE:P0A8V2
EnsemblBacteria:EBESCT00000000939 EnsemblBacteria:EBESCT00000000940
EnsemblBacteria:EBESCT00000000941 EnsemblBacteria:EBESCT00000017696
GeneID:12934478 GeneID:948488 KEGG:ecj:Y75_p3210 KEGG:eco:b3987
PATRIC:32123495 EchoBASE:EB0887 EcoGene:EG10894
BioCyc:EcoCyc:RPOB-MONOMER BioCyc:ECOL316407:JW3950-MONOMER
BioCyc:MetaCyc:RPOB-MONOMER BindingDB:P0A8V2 ChEMBL:CHEMBL1852
DrugBank:DB01220 EvolutionaryTrace:P0A8V2 Genevestigator:P0A8V2
Uniprot:P0A8V2
Length = 1342
Score = 179 (68.1 bits), Expect = 3.1e-15, Sum P(5) = 3.1e-15
Identities = 46/141 (32%), Positives = 72/141 (51%)
Query: 1181 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFL--IKMLLRQTRRPEIGDKFSSRHGQKGVI 1238
+Y E+ ++ + + K+ + L +K+ L RR + GDK + RHG KGVI
Sbjct: 1017 QYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVI 1076
Query: 1239 GLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGT 1298
I EDMP++E+G DI++NP G PSRM +G+++E G A G+ K
Sbjct: 1077 SKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGD-KINAMLKQQ 1135
Query: 1299 KLVDVQEELIRHGYNYQGKDI 1319
+ V E I+ Y+ G D+
Sbjct: 1136 QEVAKLREFIQRAYDL-GADV 1155
Score = 133 (51.9 bits), Expect = 5.5e-19, Sum P(5) = 5.5e-19
Identities = 30/87 (34%), Positives = 48/87 (55%)
Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFL--IKMLLRQTRRPEIGDKFSSRHGQKGVI 1146
+Y E+ ++ + + K+ + L +K+ L RR + GDK + RHG KGVI
Sbjct: 1017 QYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVI 1076
Query: 1147 GLIVEQEDMPFNESGICPDIIMNPHGL 1173
I EDMP++E+G DI++NP G+
Sbjct: 1077 SKINPIEDMPYDENGTPVDIVLNPLGV 1103
Score = 127 (49.8 bits), Expect = 5.5e-19, Sum P(5) = 5.5e-19
Identities = 29/74 (39%), Positives = 40/74 (54%)
Query: 1295 FGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHAR 1354
F G K +++E L G+ Y G TGE E + G +Y KL H+V DK+HAR
Sbjct: 1187 FDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHAR 1246
Query: 1355 SRGPRVVLTRQPTG 1368
S G ++T+QP G
Sbjct: 1247 STGSYSLVTQQPLG 1260
Score = 91 (37.1 bits), Expect = 5.5e-19, Sum P(5) = 5.5e-19
Identities = 35/125 (28%), Positives = 57/125 (45%)
Query: 971 TNFHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTH 1030
T+ +L GQN +A M ++GY+ ED++++++ + + + CV +
Sbjct: 789 TDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACV-------SR 841
Query: 1031 DRILGPL-LEADTRKPVYRHRAL---DQDGIVAPGEQICERQVLVNKSMPTISVSAISMA 1086
D LGP + AD P AL D+ GIV G ++ +LV K P +
Sbjct: 842 DTKLGPEEITADI--PNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTP----KGETQL 895
Query: 1087 TPEYK 1091
TPE K
Sbjct: 896 TPEEK 900
Score = 85 (35.0 bits), Expect = 5.5e-19, Sum P(5) = 5.5e-19
Identities = 28/103 (27%), Positives = 54/103 (52%)
Query: 187 DIVNHMRQDTIT-NALTAAIQT--GNWTIRRFKMERQGVTQVLS--RLSYISGLGMMTRI 241
D+ M QD I ++AA++ G+ + +F + ++++ R+S + G G +TR
Sbjct: 483 DLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISAL-GPGGLTRE 541
Query: 242 NSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLAL 284
+ FE R + + +G +CP +TPEG GL+ +L++
Sbjct: 542 RAGFEV-------RDVHPTHYGRVCPIETPEGPNIGLINSLSV 577
Score = 75 (31.5 bits), Expect = 8.2e-19, Sum P(6) = 8.2e-19
Identities = 30/112 (26%), Positives = 51/112 (45%)
Query: 360 ECRLRDLTYSAPITVDIE---YTR----GSQRVVRS-DLVIGRMPIMLQSSKCVLRNKTE 411
EC++R +TYSAP+ V + Y R G+ + ++ ++ +G +P+M + V+ N TE
Sbjct: 84 ECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVI-NGTE 142
Query: 412 YXXXXXXXXXXXVTMHSQRTSPLLSCKKLRQKRFQTYKKTPVD---DARDFL 460
V S + S K L R Y+ + +D D +D L
Sbjct: 143 RVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNL 194
Score = 51 (23.0 bits), Expect = 8.2e-19, Sum P(6) = 8.2e-19
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 499 LDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELKE 534
+DD D+ GN+R+ G + F R +KE
Sbjct: 442 VDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKE 477
Score = 37 (18.1 bits), Expect = 5.5e-19, Sum P(5) = 5.5e-19
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 914 LVPYPHHNQAPRNTYQCAMGKQAM 937
L+P+ H+ A R M +QA+
Sbjct: 667 LIPFLEHDDANRALMGANMQRQAV 690
Score = 37 (18.1 bits), Expect = 8.2e-19, Sum P(6) = 8.2e-19
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 757 LVPYPHHNQAPRNTYQCAMGKQAM 780
L+P+ H+ A R M +QA+
Sbjct: 667 LIPFLEHDDANRALMGANMQRQAV 690
>TIGR_CMR|ECH_0952 [details] [associations]
symbol:ECH_0952 "DNA-directed RNA polymerase, beta
subunit" species:205920 "Ehrlichia chaffeensis str. Arkansas"
[GO:0000345 "cytosolic DNA-directed RNA polymerase complex"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0006351 GO:GO:0003899
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 OMA:QRDLTYA ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
EMBL:AF389473 RefSeq:YP_507740.1 ProteinModelPortal:Q8KWX2
STRING:Q8KWX2 PRIDE:Q8KWX2 GeneID:3927386 KEGG:ech:ECH_0952
PATRIC:20577286 BioCyc:ECHA205920:GJNR-955-MONOMER Uniprot:Q8KWX2
Length = 1380
Score = 160 (61.4 bits), Expect = 1.4e-14, Sum P(4) = 1.4e-14
Identities = 42/110 (38%), Positives = 57/110 (51%)
Query: 1211 LIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMT 1270
++K+ + + GDK + RHG KGVI IV EDMP+ E G DII+N G PSRM
Sbjct: 1078 IVKVFVAVKHNLQPGDKMAGRHGNKGVISRIVPVEDMPYLEDGTPVDIILNSLGVPSRMN 1137
Query: 1271 VGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYN-YQGKDI 1319
VG+++E G A + G K G + V L Y Y G+D+
Sbjct: 1138 VGQILETHLGWASVNLGK-KIGHILDNLDELTVSH-LRNFLYQVYDGQDL 1185
Score = 124 (48.7 bits), Expect = 5.5e-18, Sum P(5) = 5.5e-18
Identities = 32/93 (34%), Positives = 44/93 (47%)
Query: 1276 ELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYS 1335
+LL L +G F G K + L + G+ Y G GE + +
Sbjct: 1196 DLLVFAERLRDGVPMAAPVFEGPKDSQISNLLRLADLDVSGQVDLYDGRIGEKFDRKVTV 1255
Query: 1336 GPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTG 1368
G +Y KL H+V DKIHARS GP ++T+QP G
Sbjct: 1256 GYIYMLKLHHLVDDKIHARSVGPYGLVTQQPLG 1288
Score = 116 (45.9 bits), Expect = 5.5e-18, Sum P(5) = 5.5e-18
Identities = 24/55 (43%), Positives = 33/55 (60%)
Query: 1119 LIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGL 1173
++K+ + + GDK + RHG KGVI IV EDMP+ E G DII+N G+
Sbjct: 1078 IVKVFVAVKHNLQPGDKMAGRHGNKGVISRIVPVEDMPYLEDGTPVDIILNSLGV 1132
Score = 97 (39.2 bits), Expect = 5.5e-18, Sum P(5) = 5.5e-18
Identities = 30/111 (27%), Positives = 53/111 (47%)
Query: 975 KLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRIL 1034
+L G+N +A MS+ GY+ ED+++++ + + + +CV++ D L
Sbjct: 816 ELALGKNVLVAFMSWQGYNFEDSIVISSEVVKKDVFTSIHIEEFECVVR-------DTTL 868
Query: 1035 GP--LLEA--DTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS 1081
GP ++ + D + H LD GIV G ++ +LV K P VS
Sbjct: 869 GPEKIMRSVPDINEDSLSH--LDDVGIVNVGAEVSAGDILVGKVTPRPPVS 917
Score = 85 (35.0 bits), Expect = 5.5e-18, Sum P(5) = 5.5e-18
Identities = 22/61 (36%), Positives = 34/61 (55%)
Query: 228 RLSYISGLGMMTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTH 287
RLS + G G +TR + FE R + + +G +CP +TPEG+ GL+ +LA+
Sbjct: 553 RLSAL-GPGGLTRERAGFEV-------RDVHPTHYGRICPIETPEGQNIGLISSLAIYAR 604
Query: 288 I 288
I
Sbjct: 605 I 605
Score = 58 (25.5 bits), Expect = 1.5e-15, Sum P(6) = 1.5e-15
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 485 MIRRMVLALSDPDMLDDRDYYGNKRLELAGSLLSLMF 521
+I+++VL +DD D+ GN+R+ G + F
Sbjct: 452 VIKKLVLLRDGEGSVDDIDHLGNRRVRSVGEFIENQF 488
Score = 45 (20.9 bits), Expect = 1.5e-15, Sum P(6) = 1.5e-15
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 355 QTTPHECRLRDLTYSAPITVDIEY 378
Q +EC R +T+S PI + + +
Sbjct: 88 QYDEYECIKRGITFSVPIRIVLRF 111
Score = 42 (19.8 bits), Expect = 5.5e-18, Sum P(5) = 5.5e-18
Identities = 10/37 (27%), Positives = 21/37 (56%)
Query: 681 LNMHQFLG--FKRFDDFLYEGKIEYLDVNEGNDSHIA 715
+N H F+ +++ D + K+EYL + ++ +IA
Sbjct: 605 INKHGFIESPYRKVDKGVVTDKVEYLLAMQESNYYIA 641
>UNIPROTKB|F8VRS3 [details] [associations]
symbol:POLR3B "DNA-directed RNA polymerase III subunit
RPC2" species:9606 "Homo sapiens" [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] InterPro:IPR015712 PANTHER:PTHR20856 GO:GO:0006351
GO:GO:0003899 EMBL:AC009721 GO:GO:0032549 EMBL:AC078992
EMBL:AC080012 HGNC:HGNC:30348 IPI:IPI01021275
ProteinModelPortal:F8VRS3 SMR:F8VRS3 Ensembl:ENST00000549195
ArrayExpress:F8VRS3 Bgee:F8VRS3 Uniprot:F8VRS3
Length = 54
Score = 186 (70.5 bits), Expect = 4.7e-13, P = 4.7e-13
Identities = 35/50 (70%), Positives = 45/50 (90%)
Query: 485 MIRRMVLALSDPDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELKE 534
M+RR++LA D + +DDRDYYGNKRLELAG LLSL+FED+FK+FNSE+K+
Sbjct: 1 MVRRVILAQGD-NKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKK 49
>UNIPROTKB|P21421 [details] [associations]
symbol:rpoB "DNA-directed RNA polymerase subunit beta"
species:36329 "Plasmodium falciparum 3D7" [GO:0020011 "apicoplast"
evidence=NAS] HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007645 InterPro:IPR010243
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04565 PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 GO:GO:0020011 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 PANTHER:PTHR20856:SF3
EMBL:X75544 EMBL:X95275 EMBL:X52177 PIR:S72282
ProteinModelPortal:P21421 GenomeReviews:X95275_GR Uniprot:P21421
Length = 1024
Score = 161 (61.7 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 45/158 (28%), Positives = 74/158 (46%)
Query: 1223 EIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKA 1282
++GDK +RHG KG+I I E D+P+ + I PDI ++ PSR+ +G++ E + G
Sbjct: 766 QLGDKICNRHGHKGIISYISEINDIPYLNNKIQPDIFISAISIPSRINIGQIFEGIYGLN 825
Query: 1283 GL-------MEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGK-----DIFY--SGITGEA 1328
L + N + + + + + +N K + +Y + TG
Sbjct: 826 SLYLNTRYIISNNLNKNYYNNYNHIFNYYKYNYNNNFNINSKMSYNYNKYYLKNPFTGNM 885
Query: 1329 LEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQP 1366
+ I +YY KL HM++DK R G LT+QP
Sbjct: 886 INNSICLNNIYYYKLIHMIKDKFRYRFIGLYSELTQQP 923
Score = 55 (24.4 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 41/168 (24%), Positives = 68/168 (40%)
Query: 647 FSLNGDGKRGARNSQQYC---DCPDGYSSGCQPRPT---FLNM-HQF-LGFKRFDDFLYE 698
F LN D + RN Y + +G + G T FLN+ + F + +K Y
Sbjct: 353 FILNNDLRELPRNILGYISLINTNEGLTCGLVNYLTTNIFLNLKYLFVIYYKHIFYNRYN 412
Query: 699 GKIEYLDVNEGNDSHIAVSESGIRPGV----TTHLEIAP--FTLLGVCAGIELLQYNKRF 752
K+ L++ N +I+ + ++ + TT L I F + + I + +N
Sbjct: 413 FKL-LLNIFNKNFYNISFNNIYLKKNINFNKTTILTINKNTFKICNITQNIIYIPFNYLL 471
Query: 753 HS-PGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLV 799
L+P+ H+N + RN M Q + I N N I YN +
Sbjct: 472 SFIENLIPFIHYNDSIRNLMSIKMHTQIVPIIYPNLSNIITN--YNFI 517
Score = 52 (23.4 bits), Expect = 1.8e-07, Sum P(3) = 1.8e-07
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 914 LVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLV 956
L+P+ H+N + RN M Q + I N N I YN +
Sbjct: 477 LIPFIHYNDSIRNLMSIKMHTQIVPIIYPNLSNIITN--YNFI 517
Score = 49 (22.3 bits), Expect = 1.8e-07, Sum P(3) = 1.8e-07
Identities = 26/85 (30%), Positives = 41/85 (48%)
Query: 226 LSRLSYISGLGMMTR-INSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLAL 284
LS ++ + M+T +NS+F + R L + G + +T EG CGLV
Sbjct: 333 LSEINQKFKINMITTGLNSKFILNNDL---RELPRNILGYISLINTNEGLTCGLVN---- 385
Query: 285 MTHITTENDEKNMLKIMYNIGIEHI 309
++TT N N LK ++ I +HI
Sbjct: 386 --YLTT-NIFLN-LKYLFVIYYKHI 406
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.137 0.413 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1384 1348 0.00087 124 3 11 22 0.37 34
39 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 93
No. of states in DFA: 624 (66 KB)
Total size of DFA: 582 KB (2260 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 106.38u 0.19s 106.57t Elapsed: 00:00:14
Total cpu time: 106.44u 0.19s 106.63t Elapsed: 00:00:14
Start: Thu Aug 15 16:26:45 2013 End: Thu Aug 15 16:26:59 2013