RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4067
(1384 letters)
>d1twfb_ e.29.1.1 (B:) RBP2 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 1207
Score = 264 bits (674), Expect = 9e-73
Identities = 86/189 (45%), Positives = 121/189 (64%)
Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
++ + + +++VLV++N + +K+ +R T+ P+IGDKF+SRHGQKG IG+
Sbjct: 917 KRDASTPLRSTENGIVDQVLVTTNQDGLKFVKVRVRTTKIPQIGDKFASRHGQKGTIGIT 976
Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
+EDMPF GI PD+I+NPH PSRMTV LIE L K + GN + + F +
Sbjct: 977 YRREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVAALSGNEGDASPFTDITVE 1036
Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
+ + L HGY +G ++ Y+G TG+ L A I+ GP YYQ+L+HMV DKIHAR+RGP V
Sbjct: 1037 GISKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQV 1096
Query: 1362 LTRQPTGRR 1370
LTRQP R
Sbjct: 1097 LTRQPVEGR 1105
Score = 192 bits (487), Expect = 5e-50
Identities = 102/263 (38%), Positives = 154/263 (58%), Gaps = 3/263 (1%)
Query: 913 GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
++P+P HNQ+PRNTYQ AMGKQAMG N R+DT+ L Y Q+P+ ++ +
Sbjct: 737 SIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMDTMANILYYPQKPLGTTRAMEYLK 796
Query: 973 FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
F +LPAGQNA +A+ YSGY+ ED++IMN++S+DRG R L +R+ K+Y +
Sbjct: 797 FRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQEKKYGMSITET 856
Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVS---AISMATPE 1089
P R + LD DG++APG ++ V++ K+ P A
Sbjct: 857 FEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGEDVIIGKTTPISPDEEELGQRTAYHS 916
Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
++ + + +++VLV++N + +K+ +R T+ P+IGDKF+SRHGQKG IG+
Sbjct: 917 KRDASTPLRSTENGIVDQVLVTTNQDGLKFVKVRVRTTKIPQIGDKFASRHGQKGTIGIT 976
Query: 1150 VEQEDMPFNESGICPDIIMNPHG 1172
+EDMPF GI PD+I+NPH
Sbjct: 977 YRREDMPFTAEGIVPDLIINPHA 999
Score = 91.5 bits (226), Expect = 5e-19
Identities = 65/229 (28%), Positives = 106/229 (46%), Gaps = 4/229 (1%)
Query: 185 QFDIVNHMRQDTITNALTAAIQTGNWTIRRFKM-ERQGVTQVLSRLSYISGLGMMTRINS 243
F++ + TIT+ L A+ TGNW ++ M R GV+QVL+R +Y S L + R N+
Sbjct: 424 DFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNT 483
Query: 244 QFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYN 303
+ K++ PR L + WG++CP++TPEG+ACGLVKNL+LM+ I+ D ++ +
Sbjct: 484 PIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPMPIITFLSE 543
Query: 304 IGIEHIAMFNGEELSSPGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHECRL 363
G+E + + + SP VFVNG+ G+ + + +
Sbjct: 544 WGMEPLEDYVPHQ--SPDATRVFVNGVWHGVHRNPARLMETLRTLRRKGDINPEVS-MIR 600
Query: 364 RDLTYSAPITVDIEYTRGSQRVVRSDLVIGRMPIMLQSSKCVLRNKTEY 412
I D +V D +G + ++ TEY
Sbjct: 601 DIREKELKIFTDAGRVYRPLFIVEDDESLGHKELKVRKGHIAKLMATEY 649
Score = 84.2 bits (207), Expect = 9e-17
Identities = 35/140 (25%), Positives = 54/140 (38%), Gaps = 28/140 (20%)
Query: 291 ENDEKNMLKIMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAGITCHHKEVCKPEIEESF 350
+ ++++ + +E +A E + Y + I V KP + ES
Sbjct: 39 DYTLQDIICEDSTLILEQLAQHTTESDNISRKYEISFGKI---------YVTKPMVNESD 89
Query: 351 NYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLV------------------- 391
T P E RLR+LTYS+ + VD++ V +
Sbjct: 90 GVTHALYPQEARLRNLTYSSGLFVDVKKRTYEAIDVPGRELKYELIAEESEDDSESGKVF 149
Query: 392 IGRMPIMLQSSKCVLRNKTE 411
IGR+PIML+S C L TE
Sbjct: 150 IGRLPIMLRSKNCYLSEATE 169
Score = 70.3 bits (171), Expect = 1e-12
Identities = 14/70 (20%), Positives = 35/70 (50%), Gaps = 11/70 (15%)
Query: 114 DKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKLMQANANIY-----------SDVDPLF 162
D W ++ +F +EKGLV +DSF+ F++ ++ ++ ++ + ++ +
Sbjct: 12 DSWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIICEDSTLILEQLAQHTTESDNISRKY 71
Query: 163 YLKYLDIHVG 172
+ + I+V
Sbjct: 72 EISFGKIYVT 81
Score = 63.8 bits (154), Expect = 1e-10
Identities = 51/157 (32%), Positives = 69/157 (43%), Gaps = 37/157 (23%)
Query: 690 KRFDDFLYEGKIEYLDVNEGNDSHIAVSESGIRPGVTT---------------------- 727
+ L EG +EY+D E IA+ + P
Sbjct: 662 YTWSSLLNEGLVEYIDAEEEESILIAMQPEDLEPAEANEENDLDVDPAKRIRVSHHATTF 721
Query: 728 -HLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYN 786
H EI P +LGV A I +P+P HNQ+PRNTYQ AMGKQAMG N
Sbjct: 722 THCEIHPSMILGVAASI--------------IPFPDHNQSPRNTYQSAMGKQAMGVFLTN 767
Query: 787 QQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGK 823
R+DT+ L Y Q+P+ ++ + F +LPAG+
Sbjct: 768 YNVRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQ 804
Score = 46.4 bits (109), Expect = 3e-05
Identities = 31/94 (32%), Positives = 49/94 (52%)
Query: 441 RQKRFQTYKKTPVDDARDFLSSTCIAHIPVINMRFKMKAMYLAVMIRRMVLALSDPDMLD 500
R K+ + A+D L + HI + KA +L MI R++L D D
Sbjct: 320 RGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQD 379
Query: 501 DRDYYGNKRLELAGSLLSLMFEDVFKRFNSELKE 534
DRD++G KRL+LAG LL+ +F+ +FK+ ++
Sbjct: 380 DRDHFGKKRLDLAGPLLAQLFKTLFKKLTKDIFR 413
>d1smyc_ e.29.1.1 (C:) RNA-polymerase beta {Thermus thermophilus
[TaxId: 274]}
Length = 1119
Score = 216 bits (551), Expect = 8e-58
Identities = 92/478 (19%), Positives = 164/478 (34%), Gaps = 92/478 (19%)
Query: 913 GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
LV YP N R ++ V + + +
Sbjct: 619 RLVEYPLRRFYRSNQGTALDQ-------------RPRVVVGQRVRKGDLLADGPA---SE 662
Query: 973 FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
L GQN +A+M + GY+ EDA+++++ L R F + + +
Sbjct: 663 NGFLALGQNVLVAIMPFDGYNFEDAIVISEELLKRDFYTSIHIERYEIEARDTKLGPERI 722
Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAIS-------- 1084
R LD++G+V G ++ +LV ++
Sbjct: 723 TRDI-----PHLSEAALRDLDEEGVVRIGAEVKPGDILVGRTSFKGESEPTPEERLLRSI 777
Query: 1085 --MATPEYKEVPVSYKGSVPSYLEKVL--------VSSNSEDAFLIKMLLRQTRRPEIGD 1134
+ K+ + + + + V ++++ + Q R+ ++GD
Sbjct: 778 FGEKARDVKDTSLRVPPGEGGIVVRTVRLRRGDPGVELKPGVREVVRVYVAQKRKLQVGD 837
Query: 1135 KFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVP 1194
K ++RHG KGV+ I+ EDMP G D+I+NP G
Sbjct: 838 KLANRHGNKGVVAKILPVEDMPHLPDGTPVDVILNPLG---------------------- 875
Query: 1195 SYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNES-- 1252
V S +++ L GQ+ + F+ +
Sbjct: 876 -------VPSRMNLGQILETHL---------GLAGYFLGQRYIS--------PIFDGAKE 911
Query: 1253 GICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGY 1312
+++ G+ + + ++ K G G + +EL G
Sbjct: 912 PEIKELLAQAFEVYFGKRKGEGFGVDKREVEVLRRAEKLGLVTPGKTPEEQLKELFLQG- 970
Query: 1313 NYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRR 1370
K + Y G TGE +E I G ++ KL HMV+DK+HARS GP ++T+QP G +
Sbjct: 971 ----KVVLYDGRTGEPIEGPIVVGQMFIMKLYHMVEDKMHARSTGPYSLITQQPLGGK 1024
Score = 73.3 bits (179), Expect = 1e-13
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 357 TPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLV-IGRMPIMLQSSKCVLRNKTE 411
ECR +DLTY AP+ ++ +++ D V +G +P+M + ++ N +
Sbjct: 79 PQDECREKDLTYQAPLYARLQLIHKDTGLIKEDEVFLGHIPLMTEDGSFII-NGAD 133
Score = 61.7 bits (149), Expect = 6e-10
Identities = 28/199 (14%), Positives = 59/199 (29%), Gaps = 9/199 (4%)
Query: 169 IHVGIADKIIPKIKAAQFDIVNHMRQDTITNALTAAIQTGNWTIRRFKMERQGVTQVLSR 228
VG+A + + + + N+ + R + + T LS
Sbjct: 344 FRVGLARLARGVRERMLMGSEDSLTPAKLVNSRPLEAAIREFFSRSQLSQFKDETNPLSS 403
Query: 229 LSYISGLGMMTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHI 288
L + + + + R R + + +G +CP +TPEG GL+ +LA +
Sbjct: 404 LRHKRRISALGPG--GLTRERAGFDVRDVHRTHYGRICPVETPEGANIGLITSLAAYARV 461
Query: 289 TTE-NDEKNMLKIMYNIGIEHIAMFNGEELSSPGVYLVFVNGILAGITCHHKEVCKPEIE 347
+++ + + + E Y + E +
Sbjct: 462 DELGFIRTPYRRVVGGVVTDEVVYMTATE---EDRYTIAQANTPLEGNRIAAERV---VA 515
Query: 348 ESFNYTRQTTPHECRLRDL 366
+P E D+
Sbjct: 516 RRKGEPVIVSPEEVEFMDV 534
Score = 35.5 bits (81), Expect = 0.053
Identities = 7/58 (12%), Positives = 18/58 (31%), Gaps = 12/58 (20%)
Query: 127 GLVKPHIDSFDYFINVEIKKLMQANANI------------YSDVDPLFYLKYLDIHVG 172
L + ++S+ + ++ + N I L +L+ +G
Sbjct: 17 PLTEIQVESYRRALQADVPPEKRENVGIQAAFRETFPIEEEDKGKGGLVLDFLEYRLG 74
>d1urja_ e.58.1.1 (A:) Infected cell protein 8, ICP8 {Herpes simplex
virus 1 [TaxId: 10298]}
Length = 1122
Score = 32.9 bits (75), Expect = 0.32
Identities = 21/87 (24%), Positives = 32/87 (36%), Gaps = 18/87 (20%)
Query: 28 PGP-AYIFFLL---EGLQAILFLPLFKQVDFGDSKVVSLRELLSHVTYQKRLYRLTVQPN 83
PGP Y++ EG++ + L GDS V + LTV+
Sbjct: 7 PGPLGYVYARACPSEGIELLALLSA----RSGDSDVAVA----------PLVVGLTVESG 52
Query: 84 WLGTVKAVHGTYLTMVTDETSKLKDSP 110
+ V V G+ T + LK +P
Sbjct: 53 FEANVAVVVGSRTTGLGGTAVSLKLTP 79
>d2ftra1 d.58.4.15 (A:4-106) Hypothetical protein BH0200 {Bacillus
halodurans [TaxId: 86665]}
Length = 103
Score = 29.9 bits (67), Expect = 0.55
Identities = 11/96 (11%), Positives = 26/96 (27%), Gaps = 16/96 (16%)
Query: 485 MIRRMVLALSDPDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELKETNLSGVVNLV 544
M++ + L D ++Y N L + L V + S + E+ + +
Sbjct: 4 MVKLIALYEQPEDKQAFDEHYFNTHAPLTRKIPGLRDMKVTRIVGSPMGESKFYLMCEM- 62
Query: 545 SGWWFELKYGNKIYIRSPSRKLLAAGFSGPHSGRVR 580
+++ + L
Sbjct: 63 ---YYD------------DHESLQQAMRTDEGKASG 83
>d1efpa1 c.26.2.3 (A:2-184) Large, alpha subunit of electron
transfer flavoprotein ETFP, N-terminal domain
{Paracoccus denitrificans [TaxId: 266]}
Length = 183
Score = 29.7 bits (66), Expect = 1.5
Identities = 12/70 (17%), Positives = 20/70 (28%), Gaps = 5/70 (7%)
Query: 919 HHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMY--NLVYAQRPMVESK--TIRITNFH 974
N PR + + + +Y N + + K TIR +F
Sbjct: 94 AKNVMPRVAALLDVM-VLSDVSAILDADTFERPIYAGNAIQVVKSKDAKKVFTIRTASFD 152
Query: 975 KLPAGQNATI 984
G A +
Sbjct: 153 AAGEGGTAPV 162
>d1usta_ a.4.5.13 (A:) Histone H1 homologue Hho1p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 92
Score = 27.4 bits (61), Expect = 3.9
Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Query: 89 KAVHGTYLTMVTDETSKLKDSPEIRDKWKLVLSFLKEKGLVKPHIDSFDYFINVEIKKL 147
+A +Y ++ + + LK+ + F+KE + +FD + N IKK
Sbjct: 3 EASSKSYRELIIEGLTALKERKGS--SRPALKKFIKENYPIVGSASNFDLYFNNAIKKG 59
>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific
methyltransferase SET7/9 catalytic domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 171
Score = 27.4 bits (60), Expect = 9.4
Identities = 16/133 (12%), Positives = 37/133 (27%), Gaps = 11/133 (8%)
Query: 245 FEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNI 304
+E R + + G+ + +TH ++ + + ++
Sbjct: 18 YESERVYVAESLISSAGEGLFSKVAVGPNTVMSFYNGV-RITHQEVDSRDWALNGNTLSL 76
Query: 305 GIEHIAMFNGEELSSPGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHECR-- 362
E + ++ P ++ L H P + P +C
Sbjct: 77 DEETV-----IDVPEPYNHVSKYCASLGHKANHS---FTPNCIYDMFVHPRFGPIKCIRT 128
Query: 363 LRDLTYSAPITVD 375
LR + +TV
Sbjct: 129 LRAVEADEELTVA 141
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.137 0.411
Gapped
Lambda K H
0.267 0.0593 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 5,205,725
Number of extensions: 252845
Number of successful extensions: 533
Number of sequences better than 10.0: 1
Number of HSP's gapped: 526
Number of HSP's successfully gapped: 18
Length of query: 1384
Length of database: 2,407,596
Length adjustment: 97
Effective length of query: 1287
Effective length of database: 1,075,786
Effective search space: 1384536582
Effective search space used: 1384536582
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.8 bits)