BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy407
(160 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DKP|A Chain A, Solution Structure Of The Ph Domain Of Pleckstrin Homology
Domain-Containing Protein Family A Member 5 From Human
Length = 128
Score = 76.6 bits (187), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 50/67 (74%)
Query: 43 EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 102
+EE +LGSILLPS++I+ +S+D + RK++FKA H NMRTYYF DT + M WM A+
Sbjct: 57 KEEGILGSILLPSFQIALLTSEDHINRKYAFKAAHPNMRTYYFCTDTGKEMELWMKAMLD 116
Query: 103 ASILQNS 109
A+++Q S
Sbjct: 117 AALVQTS 123
>pdb|1UPQ|A Chain A, Crystal Structure Of The Pleckstrin Homology (Ph) Domain
Of Pepp1
pdb|1UPR|A Chain A, Crystal Structure Of The Pepp1 Pleckstrin Homology Domain
In Complex With Inositol 1,3,4,5-Tetrakisphosphate
Length = 123
Score = 70.5 bits (171), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 54/110 (49%), Gaps = 5/110 (4%)
Query: 3 HVCFLIILNDNMASTLCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPSYKISPCS 62
H+ + D+ L + +L+ H + + + EE +LGS+LLPSY I P
Sbjct: 12 HIRGWLHKQDSSGLRLWKRRWFVLSGHCLFYYKDS-----REESVLGSVLLPSYNIRPDG 66
Query: 63 SDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLASILQNSSTG 112
R+F+F AEH MRTY AADT E + W+ AL AS + G
Sbjct: 67 PGAPRGRRFTFTAEHPGMRTYVLAADTLEDLRGWLRALGRASRAEGDDYG 116
>pdb|2D9Y|A Chain A, Solution Structure Of The Ph Domain Of Pepp-3 From Human
Length = 117
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 45/66 (68%)
Query: 43 EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 102
+EE +LGSI L S++++ D + RK +FKAEHA +RTY+F+A++ E W+ A+
Sbjct: 47 KEESILGSIPLLSFRVAAVQPSDNISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGE 106
Query: 103 ASILQN 108
A+ +Q+
Sbjct: 107 AARVQS 112
>pdb|2YRY|A Chain A, Solution Structure Of The Ph Domain Of Pleckstrin Homology
Domain-Containing Family A Member 6 From Human
Length = 122
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 44/65 (67%)
Query: 43 EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 102
+EE +LGSI L S++++ D + RK +FKAEHA +RTY+F+A++ E W+ A+
Sbjct: 58 KEESILGSIPLLSFRVAAVQPSDNISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGE 117
Query: 103 ASILQ 107
A+ +Q
Sbjct: 118 AARVQ 122
>pdb|1EAZ|A Chain A, Crystal Structure Of The Phosphoinositol
(3,4)-Bisphosphate Binding Ph Domain Of Tapp1 From Human
Length = 125
Score = 33.9 bits (76), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 42 FEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALS 101
E+E L L +K+ C D + R F+ + RT+Y AD+ E M W+ A+S
Sbjct: 49 LEKEPLRVIPLKEVHKVQECKQSDIMMRDNLFEIVTTS-RTFYVQADSPEEMHSWIKAVS 107
Query: 102 LASILQN 108
A + Q
Sbjct: 108 GAIVAQR 114
>pdb|1M6E|X Chain X, Crystal Structure Of Salicylic Acid Carboxyl
Methyltransferase (Samt)
Length = 359
Score = 32.3 bits (72), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 11 NDNMASTLCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPSYKISPCSSDDKVFRK 70
+++ AST C ++ LLA M + +S EEEK+ +P Y SP + ++ ++
Sbjct: 214 SEDRASTECCLIWQLLA---MALNQMVSEGLIEEEKM-DKFNIPQYTPSPTEVEAEILKE 269
Query: 71 FSFKAEHANMRTYYFAADTRE 91
SF +H Y+++ T++
Sbjct: 270 GSFLIDHIEASEIYWSSCTKD 290
>pdb|3AJB|A Chain A, Crystal Structure Of Human Pex3p In Complex With
N-Terminal Pex19p Peptide
Length = 330
Score = 31.2 bits (69), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 60 PCSSDDKVFRKFSFKAEH--ANMRTYYFAADTRESMIQWMNALSLASILQNSSTG----W 113
P S + R++ F++ NM RE+++Q +N+ SL ++L+N + W
Sbjct: 2 PLGSIAQARRQYHFESNQRTCNMTVLSMLPTLREALMQQLNSESLTALLKNRPSNKLEIW 61
Query: 114 EDRRL 118
ED ++
Sbjct: 62 EDLKI 66
>pdb|1WG7|A Chain A, Solution Structure Of Pleckstrin Homology Domain From
Human Kiaa1058 Protein
Length = 150
Score = 31.2 bits (69), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Query: 49 GSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLASILQ- 107
GSI L S ++KV R+F+F+ + + +Y AAD+ M +W+ L+ ILQ
Sbjct: 71 GSIFLDS--CMGVVQNNKV-RRFAFELKMQDKSSYLLAADSEVEMEEWITILN--KILQL 125
Query: 108 NSSTGWEDRRLNN--EDNDSG 126
N +++R + ED++SG
Sbjct: 126 NFEAAMQEKRNGDSHEDDESG 146
>pdb|3MK4|A Chain A, X-Ray Structure Of Human Pex3 In Complex With A Pex19
Derived Peptide
Length = 334
Score = 29.3 bits (64), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 69 RKFSFKAEH--ANMRTYYFAADTRESMIQWMNALSLASILQNSSTG----WEDRRL 118
R++ F++ NM RE+++Q +N+ SL ++L+N + WED ++
Sbjct: 15 RQYHFESNQRTCNMTVLSMLPTLREALMQQLNSESLTALLKNRPSNKLEIWEDLKI 70
>pdb|1BTN|A Chain A, Structure Of The Binding Site For Inositol Phosphates In A
Ph Domain
pdb|1MPH|A Chain A, Pleckstrin Homology Domain From Mouse Beta-Spectrin, Nmr,
50 Structures
Length = 106
Score = 26.9 bits (58), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 41/98 (41%), Gaps = 11/98 (11%)
Query: 11 NDNMASTLCHNVYLLLATHVMVFSPEI----SGLGFEEEKLLGSILLPSYKISPCS-SDD 65
N +S HNVY ++ M F + SG+ + E + S K + C + D
Sbjct: 15 NKKASSRSWHNVYCVINNQEMGFYKDAKSAASGIPYHSE------VPVSLKEAICEVALD 68
Query: 66 KVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLA 103
+K FK ++ Y F A E M W+ A+S A
Sbjct: 69 YKKKKHVFKLRLSDGNEYLFQAKDDEEMNTWIQAISSA 106
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,698,705
Number of Sequences: 62578
Number of extensions: 173899
Number of successful extensions: 274
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 266
Number of HSP's gapped (non-prelim): 14
length of query: 160
length of database: 14,973,337
effective HSP length: 91
effective length of query: 69
effective length of database: 9,278,739
effective search space: 640232991
effective search space used: 640232991
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)