RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy407
(160 letters)
>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain,
pleckstrin homology domain-containing protein family A
member 5; NMR {Homo sapiens}
Length = 128
Score = 85.6 bits (212), Expect = 2e-22
Identities = 35/68 (51%), Positives = 50/68 (73%)
Query: 43 EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 102
+EE +LGSILLPS++I+ +S+D + RK++FKA H NMRTYYF DT + M WM A+
Sbjct: 57 KEEGILGSILLPSFQIALLTSEDHINRKYAFKAAHPNMRTYYFCTDTGKEMELWMKAMLD 116
Query: 103 ASILQNSS 110
A+++Q S
Sbjct: 117 AALVQTSG 124
>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction;
1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*
Length = 123
Score = 83.3 bits (206), Expect = 2e-21
Identities = 33/70 (47%), Positives = 40/70 (57%)
Query: 43 EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 102
EE +LGS+LLPSY I P R+F+F AEH MRTY AADT E + W+ AL
Sbjct: 47 REESVLGSVLLPSYNIRPDGPGAPRGRRFTFTAEHPGMRTYVLAADTLEDLRGWLRALGR 106
Query: 103 ASILQNSSTG 112
AS + G
Sbjct: 107 ASRAEGDDYG 116
>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain,
PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 122
Score = 82.9 bits (205), Expect = 2e-21
Identities = 27/65 (41%), Positives = 44/65 (67%)
Query: 43 EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 102
+EE +LGSI L S++++ D + RK +FKAEHA +RTY+F+A++ E W+ A+
Sbjct: 58 KEESILGSIPLLSFRVAAVQPSDNISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGE 117
Query: 103 ASILQ 107
A+ +Q
Sbjct: 118 AARVQ 122
>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH
domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 117
Score = 81.3 bits (201), Expect = 6e-21
Identities = 29/71 (40%), Positives = 47/71 (66%), Gaps = 1/71 (1%)
Query: 43 EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 102
+EE +LGSI L S++++ D + RK +FKAEHA +RTY+F+A++ E W+ A+
Sbjct: 47 KEESILGSIPLLSFRVAAVQPSDNISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGE 106
Query: 103 ASILQ-NSSTG 112
A+ +Q S+G
Sbjct: 107 AARVQSGPSSG 117
>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4;
pleckstrin homoloy domain, signal transduction,
structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Length = 109
Score = 78.6 bits (194), Expect = 7e-20
Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
Query: 43 EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 102
E+ L S L + ++ ++ F+ H M Y F AD S +W++A
Sbjct: 43 EDVAALESQPLLGFTVTLVKDENS--ESKVFQLLHKGMVFYVFKADDAHSTQRWIDAFQE 100
Query: 103 ASILQNSSTG 112
++ S+G
Sbjct: 101 GTV-SGPSSG 109
>2coc_A FYVE, rhogef and PH domain containing protein 3; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.55.1.1
Length = 112
Score = 76.9 bits (189), Expect = 3e-19
Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 43 EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 102
++ +L +I LPS K+S ++++ +K + A +++Y +A + E QW+ LS
Sbjct: 45 QDGRLPRTIPLPSCKLSVPDPEERLDSGHVWKLQWAK-QSWYLSASSAELQQQWLETLST 103
Query: 103 AS 104
A+
Sbjct: 104 AA 105
>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual
dimerization induced by V derived sequence, signaling
protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A
Length = 148
Score = 75.7 bits (186), Expect = 2e-18
Identities = 16/84 (19%), Positives = 31/84 (36%), Gaps = 1/84 (1%)
Query: 43 EEEKLLGSILLPSYKISPCSSDDKVFRK-FSFKAEHANMRTYYFAADTRESMIQWMNALS 101
++++ G + Y + ++ K +K F+ + R Y F A + + +W+ L
Sbjct: 56 KDKQQKGEFAIDGYDVRMNNTLRKDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLK 115
Query: 102 LASILQNSSTGWEDRRLNNEDNDS 125
S ED E D
Sbjct: 116 FILQDLGSDVIPEDDEERGELYDD 139
>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain,
signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1
Length = 108
Score = 73.6 bits (181), Expect = 6e-18
Identities = 11/62 (17%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Query: 43 EEEKLLGSILLPSYKISPCSSDDKVF-RKFSFKAEHANMRTYYFAADTRESMIQWMNALS 101
+ ++ G+ L+ Y + + ++ F+ + RTY F A + W++ +S
Sbjct: 42 KSKQPKGTFLIKGYSVRMAPHLRRDSKKESCFELTSQDRRTYEFTATSPAEARDWVDQIS 101
Query: 102 LA 103
Sbjct: 102 FL 103
>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain,
phosphatidylinositol binding, structural genomics; NMR
{Homo sapiens} SCOP: b.55.1.1
Length = 118
Score = 71.7 bits (176), Expect = 4e-17
Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 8/77 (10%)
Query: 43 EEEKLLGSILLPSYKISPCSSDDKVFRKFSFK-------AEHANMRTYYFAADTRESMIQ 95
E+ K G + LP I +++ + KF F+ +Y A ++ M +
Sbjct: 43 EDTKPQGCMYLPGCTIKEIATNPEEAGKFVFEIIPASWDQNRMGQDSYVLMASSQAEMEE 102
Query: 96 WMNALSLASILQNSSTG 112
W+ L S+G
Sbjct: 103 WVKFLRRV-AGSGPSSG 118
>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA,
SKIP, complex, virulence, cytoplasm, membrane,
polymorphism, signaling protein; 2.60A {Homo sapiens}
PDB: 3hw2_B
Length = 112
Score = 68.7 bits (168), Expect = 4e-16
Identities = 11/61 (18%), Positives = 24/61 (39%)
Query: 43 EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 102
+ L S+ + + C + R +F+ ++ +A++ M +WM L
Sbjct: 39 TDVIPLLSVNMGGEQCGGCRRANTTDRPHAFQVILSDRPCLELSAESEAEMAEWMQHLCQ 98
Query: 103 A 103
A
Sbjct: 99 A 99
>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH
domain, signaling protein; 2.60A {Mus musculus} SCOP:
b.55.1.1 PDB: 2otx_A
Length = 211
Score = 69.0 bits (168), Expect = 3e-15
Identities = 11/62 (17%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Query: 43 EEEKLLGSILLPSYKISPCSSDDKVFRK-FSFKAEHANMRTYYFAADTRESMIQWMNALS 101
++++ G + Y + ++ K +K F+ + R Y F A + + +W+ L
Sbjct: 145 KDKQQKGEFAIDGYDVRMNNTLRKDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLK 204
Query: 102 LA 103
Sbjct: 205 FI 206
>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A
Length = 129
Score = 67.1 bits (164), Expect = 3e-15
Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Query: 43 EEEKLLGSILLPSYKISPCSSD---DKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNA 99
E LG+I L ++ S+ K + F+ A+ Y+ A T + +W+ A
Sbjct: 55 GAEDPLGAIHLRGCVVTSVESNSNGRKSEEENLFEIITADEVHYFLQAATPKERTEWIKA 114
Query: 100 LSLASILQNSS 110
+ +AS S
Sbjct: 115 IQMASRTGKSG 125
>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain,
zizimin1, structural genomics, riken structural
genomics/proteomics initiative; NMR {Homo sapiens} SCOP:
b.55.1.1
Length = 150
Score = 66.5 bits (162), Expect = 7e-15
Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 43 EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 102
++ GSI L S ++ R+F+F+ + + +Y AAD+ M +W+ L+
Sbjct: 65 ISKEPKGSIFLDSCMGVVQNNKV---RRFAFELKMQDKSSYLLAADSEVEMEEWITILNK 121
Query: 103 ASILQNSSTGWEDRRLNNEDNDS 125
L + E R ++ ++D
Sbjct: 122 ILQLNFEAAMQEKRNGDSHEDDE 144
>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens}
SCOP: b.55.1.1
Length = 113
Score = 65.5 bits (160), Expect = 8e-15
Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 1/61 (1%)
Query: 43 EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 102
+ G I L ++ D R F FK + ++F A E W+ ++
Sbjct: 40 SDNSPKGMIPLKGSTLT-SPCQDFGKRMFVFKITTTKQQDHFFQAAFLEERDAWVRDINK 98
Query: 103 A 103
A
Sbjct: 99 A 99
>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid
binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP:
b.55.1.1 PDB: 2i5c_A* 1zm0_A
Length = 109
Score = 63.2 bits (154), Expect = 5e-14
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 43 EEEKLLGSILLPSYKIS---PCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNA 99
E LG+I L ++ S+ K + F+ A+ Y+ A T + +W+ A
Sbjct: 44 GAEDPLGAIHLRGCVVTSVESNSNGRKSEEENLFEIITADEVHYFLQAATPKERTEWIKA 103
Query: 100 LSLAS 104
+ +AS
Sbjct: 104 IQMAS 108
>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid
degradation, phosphatidylinositol (3, 4)-bisphosphate,
signalling; HET: CIT; 1.40A {Homo sapiens} SCOP:
b.55.1.1
Length = 125
Score = 63.6 bits (155), Expect = 6e-14
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 43 EEEKLLGSILLPS-YKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALS 101
E++ L I L +K+ C D + R F+ + RT+Y AD+ E M W+ A+S
Sbjct: 49 LEKEPLRVIPLKEVHKVQECKQSDIMMRDNLFEIVTTS-RTFYVQADSPEEMHSWIKAVS 107
Query: 102 LASILQNSSTGWEDRR 117
+I+ G
Sbjct: 108 -GAIVAQRGPGRSASS 122
>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}
Length = 228
Score = 61.5 bits (149), Expect = 2e-12
Identities = 21/104 (20%), Positives = 39/104 (37%), Gaps = 10/104 (9%)
Query: 43 EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 102
EEKL G++ + S D ++ A+ RT++ A++ E QW + LS
Sbjct: 98 SEEKLKGTVEVRSA----KEIIDNTNKENGIDIIMAD-RTFHLIAESPEDASQWFSVLSQ 152
Query: 103 ASI-----LQNSSTGWEDRRLNNEDNDSGFHGTYGRSSNRAKPN 141
++ + + D G + S + +PN
Sbjct: 153 VHSSTDQEIREMHDEQANPQNAVGTLDVGLIDSVCASDSPDRPN 196
Score = 34.2 bits (78), Expect = 0.010
Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 58 ISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALS 101
I + D R SF AN R + ADT E M W+ L
Sbjct: 183 IDSVCASDSPDRPNSFVIITAN-RVLHCNADTPEEMHHWITLLQ 225
>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel
beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo
sapiens} PDB: 3via_A 2dhi_A
Length = 112
Score = 58.0 bits (140), Expect = 6e-12
Identities = 6/69 (8%), Positives = 20/69 (28%), Gaps = 8/69 (11%)
Query: 43 EEEKLLGSILLPS--------YKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMI 94
+ + + +P + D + + + +T A++ + +
Sbjct: 41 TRQNIEDKVHMPMDCINIRTGQECRDTQPPDGKSKDCMLQIVCRDGKTISLCAESTDDCL 100
Query: 95 QWMNALSLA 103
W L +
Sbjct: 101 AWKFTLQDS 109
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo
sapiens} SCOP: b.55.1.1
Length = 107
Score = 57.5 bits (139), Expect = 8e-12
Identities = 13/62 (20%), Positives = 21/62 (33%), Gaps = 3/62 (4%)
Query: 43 EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 102
+ + L ++ P S D +SF+ H A + E M W+ L
Sbjct: 42 RSKVAQQPLSLVGCEVVPDPSPD---HLYSFRILHKGEELAKLEAKSSEEMGHWLGLLLS 98
Query: 103 AS 104
S
Sbjct: 99 ES 100
>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the
pleckstrin homology domain, structural genomics; NMR
{Mus musculus} SCOP: b.55.1.1
Length = 126
Score = 57.3 bits (138), Expect = 1e-11
Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 43 EEEKLLGSILLPSY------KISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQW 96
+ +G+ + S K+S + K F F +A + Y+ A+ ++ + W
Sbjct: 53 PQNLAVGAGAVGSLQLTYISKVSIATPKQKPKTPFCFV-INALSQRYFLQANDQKDLKDW 111
Query: 97 MNALSLAS 104
+ AL+ AS
Sbjct: 112 VEALNQAS 119
>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo
sapiens} SCOP: b.55.1.1
Length = 129
Score = 56.8 bits (137), Expect = 3e-11
Identities = 14/76 (18%), Positives = 27/76 (35%), Gaps = 8/76 (10%)
Query: 43 EEEKLLGSILLPSYKISPCSSDDKVF------RKFSFKAEHANMRTYYFAADTRESMIQW 96
EE + +G L +S + + FK + YY A ++ +W
Sbjct: 56 EENRPVGGFSLRGSLVSALEDNGVPTGVKGNVQGNLFKVITKDDTHYYIQASSKAERAEW 115
Query: 97 MNALSLASILQNSSTG 112
+ A+ + S+G
Sbjct: 116 IEAIK--KLTSGPSSG 129
>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: b.55.1.1
Length = 117
Score = 55.9 bits (135), Expect = 5e-11
Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 7/75 (9%)
Query: 43 EEEKLLGSILLPS-----YKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWM 97
+ + G I L + V K F + R Y F A S QW+
Sbjct: 45 MDTECKGVIDLAEVEAVAPGTPTIGAPKTVDEKAFFDVKTTR-RVYNFCAQDVPSAQQWV 103
Query: 98 NALSLASILQNSSTG 112
+ + + + S+G
Sbjct: 104 DRIQ-SCLSSGPSSG 117
>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 119
Score = 55.9 bits (135), Expect = 5e-11
Identities = 13/69 (18%), Positives = 26/69 (37%), Gaps = 5/69 (7%)
Query: 43 EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 102
++ L SI L S + + F+ R A T+++M+ W+ L +
Sbjct: 47 QDANPLDSIDLSSAVFDCKADA----EEGIFEI-KTPSRVITLKAATKQAMLYWLQQLQM 101
Query: 103 ASILQNSST 111
++S
Sbjct: 102 KRWEFHNSP 110
>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 115
Score = 54.7 bits (132), Expect = 1e-10
Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Query: 43 EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 102
+ + G ILL S DK +K F +T+ +A ++ +W+ A+
Sbjct: 43 DLKDKKGDILL-DENCCVESLPDKDGKKCLFLV-KCFDKTFEISASDKKKKQEWIQAIHS 100
Query: 103 A-SILQNSSTG 112
+L+ S+G
Sbjct: 101 TIHLLKLGSSG 111
>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus}
SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A*
1u29_A* 1u27_A*
Length = 127
Score = 54.6 bits (131), Expect = 2e-10
Identities = 14/85 (16%), Positives = 27/85 (31%), Gaps = 19/85 (22%)
Query: 43 EEEKLLGSILLPSYKISPCSSDDKVF------------------RKFSFKAEHANMRTYY 84
+++ G I L + I K + + N Y
Sbjct: 40 TDKEPRGIIPLENLSIREVLDPRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYR 99
Query: 85 FAADTRESMIQWMNALSLASILQNS 109
+A + E +WM ++ ASI ++
Sbjct: 100 ISAPSPEEKEEWMKSIK-ASISRDP 123
>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides;
pleckstrin, inositol tetrakisphosphate signal
transduction protein, adaptor protein; HET: 4IP; 1.80A
{Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A
Length = 126
Score = 52.8 bits (127), Expect = 7e-10
Identities = 12/61 (19%), Positives = 18/61 (29%), Gaps = 3/61 (4%)
Query: 43 EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 102
+ + + L S D R F RT+Y A T +W+ L
Sbjct: 53 MSPEPIRILDLTE--CSAVQFDYSQERVNCFCLVFPF-RTFYLCAKTGVEADEWIKILRW 109
Query: 103 A 103
Sbjct: 110 K 110
>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH
domains (ARAP) 2, PH domain, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Length = 115
Score = 52.4 bits (126), Expect = 8e-10
Identities = 15/68 (22%), Positives = 24/68 (35%), Gaps = 7/68 (10%)
Query: 43 EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 102
+E G I L + IS F+ RT+ F + E W++ L
Sbjct: 44 KEMYSKGIIPLSA--ISTVRVQ----GDNKFEVVT-TQRTFVFRVEKEEERNDWISILLN 96
Query: 103 ASILQNSS 110
A Q+ +
Sbjct: 97 ALKSQSLT 104
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH
domain, phret1, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 130
Score = 52.3 bits (125), Expect = 1e-09
Identities = 9/78 (11%), Positives = 19/78 (24%), Gaps = 8/78 (10%)
Query: 43 EEEKLLGSILLPSYKIS--------PCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMI 94
+ +++ + R + A+TR+ I
Sbjct: 44 TAQDEEDRVVIHFNVRDIKVGQECQDVQPPEGRSRDGLLTVNLREGSRLHLCAETRDDAI 103
Query: 95 QWMNALSLASILQNSSTG 112
W AL A+ +
Sbjct: 104 AWKTALMEANSTPAPAGA 121
>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21,
myristate, transport, nucleotide-binding, rhogap
protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP:
b.55.1.1 PDB: 2dhj_A
Length = 168
Score = 53.3 bits (127), Expect = 1e-09
Identities = 24/108 (22%), Positives = 42/108 (38%), Gaps = 8/108 (7%)
Query: 20 HNVYLLLATHVMVF--SPEISGLGFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEH 77
+Y++L H + EEE I + + I S+ K RK F+
Sbjct: 30 KQMYVVLRGHSLYLYKDKREQTTPSEEE---QPISVNACLIDISYSETK--RKNVFRLTT 84
Query: 78 ANMRTYYFAADTRESMIQWMNALSLASILQNSSTGWEDRRLNNEDNDS 125
++ F A+ R+ M+ W+ + +S L TG +R L +
Sbjct: 85 SD-CECLFQAEDRDDMLAWIKTIQESSNLNEEDTGVTNRDLISRRIKE 131
>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens}
Length = 134
Score = 52.4 bits (125), Expect = 1e-09
Identities = 12/82 (14%), Positives = 27/82 (32%), Gaps = 21/82 (25%)
Query: 43 EEEKLLGSILLPSYKISPC--SSDDKVFRKFSF-------------------KAEHANMR 81
+ + +G I L + ++ + R+ +F + +
Sbjct: 45 KRKNPIGRINLANCTSRQIEPANREFCARRNTFELITVRPQREDDRETLVSQCRDTLCVT 104
Query: 82 TYYFAADTRESMIQWMNALSLA 103
+ +ADT+E WM L+
Sbjct: 105 KNWLSADTKEERDLWMQKLNQV 126
>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain,
PIP2 binding site, structural genomics; NMR {Homo
sapiens} SCOP: b.55.1.1
Length = 126
Score = 51.1 bits (122), Expect = 4e-09
Identities = 11/62 (17%), Positives = 23/62 (37%)
Query: 43 EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 102
++ + + L Y + + +F T FA+D + I W+ A+
Sbjct: 48 KKAEPQELLQLDGYTVDYTDPQPGLEGGRAFFNAVKEGDTVIFASDDEQDRILWVQAMYR 107
Query: 103 AS 104
A+
Sbjct: 108 AT 109
>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator,
pleckstrin homology domain, STR genomics consortium,
SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens}
Length = 124
Score = 50.6 bits (121), Expect = 5e-09
Identities = 12/91 (13%), Positives = 26/91 (28%), Gaps = 8/91 (8%)
Query: 20 HNVYLLLATHVMVF-------SPEISGLGFEEEKLLGSILLPSYKISPCSSDDKVFRKFS 72
+ +L V+ F + + ++ L +S D RK
Sbjct: 32 SASWTVLEGGVLTFFKDSKTSAAGGLRQPSKFSTPEYTVELRGATLSWAPKDKS-SRKNV 90
Query: 73 FKAEHANMRTYYFAADTRESMIQWMNALSLA 103
+ + Y D+ + W A++
Sbjct: 91 LELRSRDGSEYLIQHDSEAIISTWHKAIAQG 121
>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural
genomics, spectrin beta chain, brain 2, KIAA0302; NMR
{Homo sapiens} SCOP: b.55.1.1
Length = 123
Score = 50.3 bits (120), Expect = 6e-09
Identities = 17/85 (20%), Positives = 30/85 (35%), Gaps = 1/85 (1%)
Query: 20 HNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHAN 79
NVY +L + F + + G + + + + D RK FK +
Sbjct: 33 QNVYCVLRRGSLGFYKD-AKAASAGVPYHGEVPVSLARAQGSVAFDYRKRKHVFKLGLQD 91
Query: 80 MRTYYFAADTRESMIQWMNALSLAS 104
+ Y F A M W+ ++ A
Sbjct: 92 GKEYLFQAKDEAEMSSWLRVVNAAI 116
>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH
domain, lipid-binding, membrane, membrane protein; 1.90A
{Homo sapiens} PDB: 2kcj_A
Length = 103
Score = 49.8 bits (119), Expect = 7e-09
Identities = 11/62 (17%), Positives = 22/62 (35%), Gaps = 5/62 (8%)
Query: 43 EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 102
+ GSI + +I S+D+ + + +Y A +W+ AL
Sbjct: 36 VCKGSKGSIKMAVCEIKVHSADNT-----RMELIIPGEQHFYMKAVNAAERQRWLVALGS 90
Query: 103 AS 104
+
Sbjct: 91 SK 92
>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP:
b.55.1.1
Length = 122
Score = 50.0 bits (119), Expect = 1e-08
Identities = 17/88 (19%), Positives = 27/88 (30%), Gaps = 5/88 (5%)
Query: 20 HNVYLLLATHVMVF---SPEISGLGFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAE 76
VY+ + F + S L + I S K +K + +
Sbjct: 33 DKVYMAAKAGRISFYKDQKGYKSNPELTFRGEPSYDLQNAAIEIASDYTK--KKHVLRVK 90
Query: 77 HANMRTYYFAADTRESMIQWMNALSLAS 104
AN + A M QW+ +L S
Sbjct: 91 LANGALFLLQAHDDTEMSQWVTSLKAQS 118
>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology,
lipid transport; NMR {Homo sapiens}
Length = 94
Score = 48.9 bits (117), Expect = 1e-08
Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 6/61 (9%)
Query: 43 EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 102
E GSI L I+P D+ +F N +Y A + QW++A+
Sbjct: 38 TEYGCRGSICLSKAVITPHDFDEC---RFDI---SVNDSVWYLRAQDPDHRQQWIDAIEQ 91
Query: 103 A 103
Sbjct: 92 H 92
>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP:
b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A
Length = 125
Score = 49.7 bits (118), Expect = 1e-08
Identities = 12/76 (15%), Positives = 25/76 (32%), Gaps = 8/76 (10%)
Query: 43 EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYY-------FAADTRESMIQ 95
EE++ + + + K+ + K F + R Y A +T+E +
Sbjct: 49 EEKEKKYMLSVDNLKLRDVE-KGFMSSKHIFALFNTEQRNVYKDYRQLELACETQEEVDS 107
Query: 96 WMNALSLASILQNSST 111
W + A +
Sbjct: 108 WKASFLRAGVYPERVG 123
>2d9x_A Oxysterol binding protein-related protein 11; PH domain,
OSBP-related protein 11, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 120
Score = 49.1 bits (117), Expect = 2e-08
Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 5/74 (6%)
Query: 42 FEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALS 101
+K G++ L ISP D +F A+ Y A + W++ L
Sbjct: 46 SRNQKPRGTLQLAGAVISPSDED-----SHTFTVNAASGEQYKLRATDAKERQHWVSRLQ 100
Query: 102 LASILQNSSTGWED 115
+ + + G +
Sbjct: 101 ICTQHHTEAIGKNN 114
>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex,
pleckstrin homology domain, ligand binding protein; HET:
I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*
Length = 129
Score = 48.7 bits (116), Expect = 3e-08
Identities = 13/90 (14%), Positives = 27/90 (30%), Gaps = 8/90 (8%)
Query: 20 HNVYLLLATHVMVF------SPEISGLGFEEEKLLGSILLPSYKISPCSSDDKVFRKFSF 73
+++L + +VF + SG G + S+ L ++ R+
Sbjct: 35 GPSWVVLTGNSLVFYREPPPTAPSSGWGPAGSRPESSVDLRGAALAHGRHLSS--RRNVL 92
Query: 74 KAEHANMRTYYFAADTRESMIQWMNALSLA 103
+ +D + W AL
Sbjct: 93 HIRTIPGHEFLLQSDHETELRAWHRALRTV 122
>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus
musculus} SCOP: b.55.1.1 PDB: 1mph_A
Length = 106
Score = 47.6 bits (113), Expect = 5e-08
Identities = 20/85 (23%), Positives = 29/85 (34%), Gaps = 3/85 (3%)
Query: 20 HNVYLLLATHVM-VFSPEISGLGFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHA 78
HNVY ++ M + S + L K +K FK +
Sbjct: 24 HNVYCVINNQEMGFYKDAKSAASGIPYHSEVPVSLKEAICEVALDYKK--KKHVFKLRLS 81
Query: 79 NMRTYYFAADTRESMIQWMNALSLA 103
+ Y F A E M W+ A+S A
Sbjct: 82 DGNEYLFQAKDDEEMNTWIQAISSA 106
>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1;
guanine nucleotide exchange factor, guanine-nucleotide
releasing factor, lipoprotein; 4.50A {Mus musculus}
Length = 279
Score = 49.2 bits (116), Expect = 8e-08
Identities = 12/101 (11%), Positives = 35/101 (34%), Gaps = 5/101 (4%)
Query: 20 HNVYLLLATHVMVF--SPEISGLGFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEH 77
+ ++ L + F + SG+ ++ + + + K + F F +
Sbjct: 40 KHYWVSLKGCTLFFYETDGRSGID-HNSVPKHAVWVENSIVQAVPEHPK--KDFVFCLSN 96
Query: 78 ANMRTYYFAADTRESMIQWMNALSLASILQNSSTGWEDRRL 118
+ + F ++ + W+ A+ A + ++ L
Sbjct: 97 SLGDAFLFQTTSQTELENWITAIHSACAAAVARHHHKEDTL 137
>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 137
Score = 45.8 bits (108), Expect = 4e-07
Identities = 12/76 (15%), Positives = 23/76 (30%), Gaps = 5/76 (6%)
Query: 48 LGSILLPSYKISPCSSDDKVFRKFSFKAEH---ANMRTYYFAADTRESMIQWMNALSLAS 104
+ + L ++ P + +KF K M Y + +WM LAS
Sbjct: 54 IQQLNLKGCEVVPDVNVSG--QKFCIKLLVPSPEGMSEIYLRCQDEQQYARWMAGCRLAS 111
Query: 105 ILQNSSTGWEDRRLNN 120
+ + +
Sbjct: 112 KGRTMADSSYTSEVQA 127
>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling
protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB:
3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A
Length = 120
Score = 45.4 bits (107), Expect = 5e-07
Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 12/65 (18%)
Query: 48 LGSILLPSYKISPCSSDDKVFR--------KFSFKAEHANM----RTYYFAADTRESMIQ 95
+ S+ L ++ S + KF A+ + + F AD+ ESM+
Sbjct: 49 VMSLALSECTVTEHSRKNSTSSPNSTGSDAKFVLHAKQNGIIRRGHNWVFKADSYESMMS 108
Query: 96 WMNAL 100
W + L
Sbjct: 109 WFDNL 113
>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine
nucleotide exchange factor, alternative splicing, cell
projection, coiled coil; 2.10A {Mus musculus} PDB:
3a8q_A
Length = 263
Score = 46.5 bits (109), Expect = 7e-07
Identities = 8/50 (16%), Positives = 19/50 (38%)
Query: 61 CSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLASILQNSS 110
S + ++ F ++ Y F A ++ + W+ A+ A +
Sbjct: 80 QSVPEHPKKEHVFCLSNSCGDVYLFQATSQTDLENWVTAIHSACASLFAK 129
>4f7h_A Fermitin family homolog 2; beta-barrel, membrane binding, integrin
activation, cytoplas membrane, cell adhesion; HET: SRT;
1.90A {Homo sapiens} PDB: 2lko_A*
Length = 173
Score = 45.1 bits (106), Expect = 1e-06
Identities = 13/68 (19%), Positives = 23/68 (33%), Gaps = 5/68 (7%)
Query: 43 EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAE---HANMRTYYFAADTRESMIQWMNA 99
+ L +++P + +KF+ K M + D + WM A
Sbjct: 87 SSGTPAHQMNLRGCEVTPDVNISG--QKFNIKLLIPVAEGMNEIWLRCDNEKQYAHWMAA 144
Query: 100 LSLASILQ 107
LAS +
Sbjct: 145 CRLASKGK 152
>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.55.1.1
Length = 149
Score = 44.3 bits (104), Expect = 2e-06
Identities = 7/59 (11%), Positives = 19/59 (32%), Gaps = 4/59 (6%)
Query: 43 EEEKLLGSILLPSY-KISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNAL 100
+ + + + ++ +S +K KF+ + ES +W +
Sbjct: 53 KSIIYVDKLDIVDLTCLTEQNSTEKNCAKFTLVLPK---EEVQLKTENTESGEEWRGFI 108
>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology
domain, PKB, AKT, phosphoinositide,
serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo
sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A*
2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A
Length = 125
Score = 43.4 bits (102), Expect = 2e-06
Identities = 10/66 (15%), Positives = 22/66 (33%), Gaps = 4/66 (6%)
Query: 43 EEEKLLGSILLPSYKISPCS-SDDKVFRKFSFKAEHANMRTY---YFAADTRESMIQWMN 98
++ L ++ ++ C + R +F T F +T E +W
Sbjct: 44 PQDVDQREAPLNNFSVAQCQLMKTERPRPNTFIIRCLQWTTVIERTFHVETPEEREEWTT 103
Query: 99 ALSLAS 104
A+ +
Sbjct: 104 AIQTVA 109
>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative, transferase; NMR {Homo sapiens}
Length = 164
Score = 43.6 bits (102), Expect = 4e-06
Identities = 12/64 (18%), Positives = 20/64 (31%), Gaps = 5/64 (7%)
Query: 44 EEKLLGSILLPSYKI----SPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNA 99
++ G I + K K+ F+ H T Y A + +S W+
Sbjct: 57 KKYRKGFIDVSKIKCVEIVKNDDGVIPCQNKYPFQVVHDA-NTLYIFAPSPQSRDLWVKK 115
Query: 100 LSLA 103
L
Sbjct: 116 LKEE 119
>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2;
hydrolase, phospholipase C, phosphoinositides, RHO
gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens}
PDB: 2w2w_A* 2w2x_C* 2k2j_A
Length = 124
Score = 42.9 bits (100), Expect = 4e-06
Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 9/85 (10%)
Query: 23 YLLLATHVMVFSPEISGLGFEEEKLLGSIL-----LPSYKISPCSSDDKVFRKFSFKAEH 77
+ +A + FS +I EE+ LGS+ L +Y + K + F F E
Sbjct: 32 FCAIADAKLSFSDDIE-QTMEEDNPLGSLCRGILDLNTYNVVKAP-QGKNQKSFVFILEP 89
Query: 78 ANM--RTYYFAADTRESMIQWMNAL 100
FA D E + +W ++
Sbjct: 90 KQQGDPPVEFATDKVEELFEWFQSI 114
>1v88_A Oxysterol binding protein-related protein 8; vesicle transport,
pleckstrin homology domain, phosphatidylinositol
binding, structural genomics; NMR {Homo sapiens} SCOP:
b.55.1.1
Length = 130
Score = 42.8 bits (100), Expect = 5e-06
Identities = 18/90 (20%), Positives = 30/90 (33%), Gaps = 21/90 (23%)
Query: 43 EEEKLLGSILLPSYKISPCSSDDKVF-------------RKFSFKAEH------ANMRTY 83
+ + +G++LL + +I S F K E +Y
Sbjct: 42 KNGQWVGTVLLNACEIIERPSKKDGFCFKLFHPLEQSIWAVKGPKGEAVGSITQPLPSSY 101
Query: 84 Y-FAADTRESMIQWMNALSLASILQNSSTG 112
A + WM+AL LA + S+G
Sbjct: 102 LIIRATSESDGRCWMDALELA-LKSGPSSG 130
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain,
BAR-PH domain, protein transpo; 2.05A {Homo sapiens}
PDB: 2z0o_A 2elb_A
Length = 385
Score = 43.8 bits (102), Expect = 6e-06
Identities = 6/65 (9%), Positives = 26/65 (40%), Gaps = 6/65 (9%)
Query: 49 GSILLPSYKISPCSSDDKVFRKFSFKAE-HANMRTYYFAADTRESMIQWMNAL--SLASI 105
++ + + + +D R++ F+ ++ A++++ +W+ + I
Sbjct: 321 LAMDIDNCSVMAVDCED---RRYCFQITSFDGKKSSILQAESKKDHEEWICTINNISKQI 377
Query: 106 LQNSS 110
+ +
Sbjct: 378 YLSEN 382
>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1
GTPase-activating protein...; PH domain, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 114
Score = 42.1 bits (99), Expect = 7e-06
Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 8/72 (11%)
Query: 43 EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNAL-- 100
+ + L + ++ P + K SF + RTY+F A+ + + W++ L
Sbjct: 45 TSNRQPAKLNLLTCQVKPNAE-----DKKSFDLIS-HNRTYHFQAEDEQDYVAWISVLTN 98
Query: 101 SLASILQNSSTG 112
S L + +G
Sbjct: 99 SKEEALTMAFSG 110
>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein
binding, structural genomics, NPPSFA; 1.70A {Mus
musculus}
Length = 126
Score = 41.9 bits (98), Expect = 9e-06
Identities = 11/90 (12%), Positives = 29/90 (32%), Gaps = 8/90 (8%)
Query: 20 HNVYLLLATHVMVFSPEISGLGFEEEKL----LGSILLPSYKISPCSSDDKVFRKFSFKA 75
+++L+ +++ S G + + + + + + + F+
Sbjct: 25 TRYWVVLSGATLLYYGAKSLRGTDRKHYKSTPGKKVSIVGWMVQLPDDPEH---PDIFQL 81
Query: 76 EHANM-RTYYFAADTRESMIQWMNALSLAS 104
+ + Y F +R I W L A
Sbjct: 82 NNPDKGNVYKFQTGSRFHAILWHKHLDDAC 111
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH,
RAS-associating, pleckstrin-homology, adapter
phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Length = 256
Score = 39.0 bits (90), Expect = 2e-04
Identities = 14/89 (15%), Positives = 24/89 (26%), Gaps = 10/89 (11%)
Query: 23 YLLLATHVMVFSPEISGLGFEEEKLLGSILLPSYKISPCSSDDKVFR---KFSFKAEHAN 79
Y+ L + S + G L L I + K + +
Sbjct: 152 YVCLRRSGLYCSTK--GTSAAPRHLQLLADLEDSNIFSLIAGRKQYNAPTDHGLCIKPNK 209
Query: 80 MRT-----YYFAADTRESMIQWMNALSLA 103
+R A+ ++ WM A L
Sbjct: 210 VRNETKELRLLCAEDEQTRTSWMTAFRLL 238
>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK
repeat, cytoplasm, GTP-binding, GTPase activation,
metal-binding, nucleotide-binding; NMR {Homo sapiens}
Length = 128
Score = 36.0 bits (82), Expect = 0.001
Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 58 ISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLASILQ 107
+ S+ F F + +T++F A + E W+ A+ + IL
Sbjct: 77 SASGSAGQAEEENFEFLIVSSTGQTWHFEAASFEERDAWVQAIE-SQILA 125
>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene
regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1
PDB: 1pms_A 1awe_A
Length = 354
Score = 36.1 bits (83), Expect = 0.002
Identities = 15/77 (19%), Positives = 30/77 (38%), Gaps = 2/77 (2%)
Query: 24 LLLATHVMVFSPEISGLGFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTY 83
L++ P + G E +L + +I+ ++ K +F+ + +
Sbjct: 270 LMICCKSNHGQPRLPGASNAEYRLKEKFFMRKVQINDKDDTNEY--KHAFEIILKDENSV 327
Query: 84 YFAADTRESMIQWMNAL 100
F+A + E WM AL
Sbjct: 328 IFSAKSAEEKNNWMAAL 344
>1v61_A RAC/CDC42 guanine nucleotide exchange factor (GEF) 6; pleckstrin
homology domain, structural genomics; NMR {Mus musculus}
SCOP: b.55.1.1
Length = 132
Score = 34.9 bits (80), Expect = 0.003
Identities = 16/94 (17%), Positives = 31/94 (32%), Gaps = 7/94 (7%)
Query: 20 HNVYLLLATHVMVF-SPEISGLGFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHA 78
Y LL + V++ S GF G I + ++ D+ F+ +
Sbjct: 45 EERYFLLFSSVLIMLSASPRMSGF---MYQGKIPIAGMVVN--RLDEIEGSDCMFEITGS 99
Query: 79 NMRTYYFAADTRESMIQWMNALSLASILQNSSTG 112
+ + + +WM L+ S+G
Sbjct: 100 TVERIVVHCNNNQDFQEWMEQLNRL-TKSGPSSG 132
>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc
binding, X-linked agammaglobulinemia, tyrosine-protein
kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A*
2z0p_A* 1bwn_A*
Length = 169
Score = 34.9 bits (79), Expect = 0.005
Identities = 7/69 (10%), Positives = 14/69 (20%), Gaps = 1/69 (1%)
Query: 36 EISGLGFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQ 95
E + F+ + Y + T E +
Sbjct: 64 ETVVPEKNPPPERQIPRRGEESSEMEQISIIERFPYPFQVVYDE-GPLYVFSPTEELRKR 122
Query: 96 WMNALSLAS 104
W++ L
Sbjct: 123 WIHQLKNVI 131
>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal
transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2
b.55.1.2 PDB: 1irs_A*
Length = 264
Score = 34.1 bits (77), Expect = 0.013
Identities = 12/60 (20%), Positives = 18/60 (30%), Gaps = 5/60 (8%)
Query: 45 EKLLGSILLPS-YKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLA 103
SI L S + I+ + K + + AAD+ W AL
Sbjct: 55 SAPKRSIPLESCFNINKRADSK---NKHLVAL-YTRDEHFAIAADSEAEQDSWYQALLQL 110
>2fjl_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1;
beta-barrel, hydrolase; NMR {Rattus norvegicus} SCOP:
b.55.1.1
Length = 150
Score = 33.1 bits (75), Expect = 0.015
Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 6/64 (9%)
Query: 43 EEEKLLGSILLPSYKISPC----SSDDKVFRKFSFKAEHANM--RTYYFAADTRESMIQW 96
+E LG +L + C + K R F F ++ + AAD++E + W
Sbjct: 80 DENSPLGDLLRGVLDVPACQIAIRPEGKNNRLFVFSISMPSVAQWSLDVAADSQEELQDW 139
Query: 97 MNAL 100
+ +
Sbjct: 140 VKKI 143
>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH),
beta sandwich (PH), signaling protein; 2.13A {Homo
sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A
Length = 385
Score = 33.7 bits (77), Expect = 0.019
Identities = 14/95 (14%), Positives = 28/95 (29%), Gaps = 15/95 (15%)
Query: 22 VYLLLATHVMVF-------------SPEISGLGFEEEKLLGSILLPSYKISPCSSDDKVF 68
+Y LL ++V S ++ + I L + + ++D+K
Sbjct: 275 LYTLLLEDILVLLQKQDDRLVLRCHSKILASTADSKHTFSPVIKLSTVLVRQVATDNKAL 334
Query: 69 RKFSFKAEHANMRTYYFAADTRESMIQWMNALSLA 103
F + Y A T W + +
Sbjct: 335 --FVISMSDNGAQIYELVAQTVSEKTVWQDLICRM 367
>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY
crystallography, regulation of RHOA GTPase, protein
complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1
PDB: 3kz1_A*
Length = 368
Score = 33.3 bits (76), Expect = 0.022
Identities = 16/95 (16%), Positives = 30/95 (31%), Gaps = 14/95 (14%)
Query: 22 VYLLLATHVMVF-------------SPEISGLGFEEEKLLGSILLPSYKISPCSSDDKVF 68
+++LL ++V S G ++ + L + I ++D + F
Sbjct: 271 LHVLLLEDLLVLLQKQDEKLLLKCHSKTAVGSSDSKQTFSPVLKLNAVLIRSVATDKRAF 330
Query: 69 RKFSFKAEHANMRTYYFAADTRESMIQWMNALSLA 103
+ + Y A T WM L A
Sbjct: 331 FIICTS-KLGPPQIYELVALTSSDKNTWMELLEEA 364
>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA
complex, pdzrhogef, guanine nucleotide exchange F RHOA,
signaling protein; 2.84A {Homo sapiens}
Length = 418
Score = 32.2 bits (73), Expect = 0.057
Identities = 16/95 (16%), Positives = 30/95 (31%), Gaps = 14/95 (14%)
Query: 22 VYLLLATHVMVF-------------SPEISGLGFEEEKLLGSILLPSYKISPCSSDDKVF 68
+++LL ++V S G ++ + L + I ++D + F
Sbjct: 313 LHVLLLEDLLVLLQKQDEKLLLKCHSKTAVGSSDSKQTFSPVLKLNAVLIRSVATDKRAF 372
Query: 69 RKFSFKAEHANMRTYYFAADTRESMIQWMNALSLA 103
+ + Y A T WM L A
Sbjct: 373 FIICTS-KLGPPQIYELVALTSSDKNTWMELLEEA 406
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural
genomics consortium, GTPase activation, SGC, binding,
nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens}
PDB: 3feh_A* 3fm8_C 3mdb_C*
Length = 386
Score = 32.0 bits (72), Expect = 0.060
Identities = 6/32 (18%), Positives = 11/32 (34%), Gaps = 1/32 (3%)
Query: 69 RKFSFKAEHANMRTYYFAADTRESMIQWMNAL 100
+ R + FA +T +W+ A
Sbjct: 337 WPHGITIVTPD-RKFLFACETESDQREWVAAF 367
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.9 bits (72), Expect = 0.079
Identities = 9/16 (56%), Positives = 11/16 (68%), Gaps = 1/16 (6%)
Query: 27 ATHVMVFSP-EISGLG 41
ATH++ F P SGLG
Sbjct: 498 ATHILDFGPGGASGLG 513
>1zc3_B Exocyst complex protein EXO84; exocytosis, small GTPase,
GTP-binding protein,, signaling protein; HET: GNP; 2.00A
{Rattus norvegicus} SCOP: b.55.1.1 PDB: 1zc4_B*
Length = 113
Score = 30.6 bits (69), Expect = 0.088
Identities = 11/85 (12%), Positives = 24/85 (28%), Gaps = 6/85 (7%)
Query: 20 HNVYLLLATHVMVF-SPEISGLGFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHA 78
V+ L ++ + G + L + + + K FK
Sbjct: 26 QRVHGFLMNDCLLVATWLPQRRG--MYRYNALYPLDRLAVVNVKDNPPM--KDMFKLLMF 81
Query: 79 NMRTYYFAADTRESMIQWMNALSLA 103
+ F A+ + +W+ L
Sbjct: 82 P-ESRIFQAENAKIKREWLEVLEET 105
>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA
GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo
sapiens} PDB: 3odo_A
Length = 377
Score = 30.6 bits (69), Expect = 0.20
Identities = 13/95 (13%), Positives = 28/95 (29%), Gaps = 15/95 (15%)
Query: 22 VYLLLATHVMVFSPE-------------ISGLGFEEEKLLGSILLPSYKISPCSSDDKVF 68
V++LL +++ ++ + L + L S ++D K F
Sbjct: 277 VHVLLLDDLLLLLQRQDERLLLKSHSRTLTPTPDGKTMLRPVLRLTSAMTREVATDHKAF 336
Query: 69 RKFSFKAEHANMRTYYFAADTRESMIQWMNALSLA 103
+ + Y A T W ++
Sbjct: 337 --YVLFTWDQEAQIYELVAQTVSERKNWCALITET 369
>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO,
GTPase, guanine-nucleotide releas factor,
phosphorylation, signaling protein; 1.70A {Homo sapiens}
SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A
Length = 311
Score = 30.5 bits (69), Expect = 0.20
Identities = 10/80 (12%), Positives = 22/80 (27%), Gaps = 1/80 (1%)
Query: 23 YLLLATHVMVFSPEISGLGFEEE-KLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMR 81
+L L +VFS E+ + + ++ D +
Sbjct: 225 HLFLFEMSLVFSKEVKDSSGRSKYLYKSKLFTSELGVTEHVEGDPCKFALWVGRTPTSDN 284
Query: 82 TYYFAADTRESMIQWMNALS 101
A + E+ W+ +
Sbjct: 285 KIVLKASSIENKQDWIKHIR 304
>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA
GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo
sapiens} PDB: 3odx_A
Length = 536
Score = 30.0 bits (67), Expect = 0.35
Identities = 13/95 (13%), Positives = 25/95 (26%), Gaps = 15/95 (15%)
Query: 22 VYLLLATHVMVFSPEISGLGF-------------EEEKLLGSILLPSYKISPCSSDDKVF 68
V++LL +++ + L + L S ++D K F
Sbjct: 430 VHVLLLDDLLLLLQRQDERLLLKSHSRTLTPTPDGKTMLRPVLRLTSAMTREVATDHKAF 489
Query: 69 RKFSFKAEHANMRTYYFAADTRESMIQWMNALSLA 103
+ Y A T W ++
Sbjct: 490 YVLF--TWDQEAQIYELVAQTVSERKNWCALITET 522
>1v5m_A SH2 and PH domain-containing adapter protein APS; adaptor protein,
pleckstrin homology domain, cellular signaling,
structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Length = 136
Score = 28.3 bits (62), Expect = 0.65
Identities = 4/44 (9%), Positives = 11/44 (25%)
Query: 58 ISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALS 101
+ + + +F + N Y W+ +
Sbjct: 83 VRTTMPLEMPEKDNTFVLKVENGAEYILETIDSLQKHSWVADIQ 126
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain,
pleckst homology domain, C1 domain, guanine-nucleotide
releasing FA metal-binding; 2.73A {Homo sapiens} PDB:
2d86_A
Length = 587
Score = 28.9 bits (64), Expect = 0.72
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Query: 49 GSILLPSYKISPCSSDDKVFRKFSFK---AEHANMRTYYFAADTRESMIQWMNALSLA 103
+ L S+++ SS D+ +K+S E + Y TRE +WM +A
Sbjct: 448 DFVNLHSFQVRDDSSGDRDNKKWSHMFLLIEDQGAQGYELFFKTRELKKKWMEQFEMA 505
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding,
metal-binding, phosphoprotein, exchange factor, RAC,
GTPase, membrane domain; 1.85A {Mus musculus} PDB:
3bji_A 1f5x_A
Length = 406
Score = 28.6 bits (64), Expect = 0.79
Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 7/77 (9%)
Query: 49 GSILLPSYKISPCSSDDKVFRKFSFK---AEHANMRTYYFAADTRESMIQWMNALSLASI 105
S+ L S+++ SS ++ +K+S E + Y TRE +WM
Sbjct: 276 ASVNLHSFQVRDDSSGERDNKKWSHMFLLIEDQGAQGYELFFKTRELKKKWMEQFE--MA 333
Query: 106 LQNSSTGWEDRRLNNED 122
+ N E+ N D
Sbjct: 334 ISNIY--PENATANGHD 348
>2rov_A RHO-associated protein kinase 2; ATP-binding, coiled coil,
cytoplasm, membrane, metal-binding, nucleotide-binding,
phorbol-ester binding; NMR {Rattus norvegicus}
Length = 117
Score = 27.7 bits (61), Expect = 0.95
Identities = 5/36 (13%), Positives = 16/36 (44%)
Query: 66 KVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALS 101
++F+ ++ + A++ E +W++ L
Sbjct: 76 RIFQILYANEGISSAKNLLLLANSTEEQQKWVSRLV 111
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta
barrel, beta sandwich, signaling protei; 2.25A {Homo
sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Length = 466
Score = 28.0 bits (62), Expect = 1.6
Identities = 9/71 (12%), Positives = 22/71 (30%), Gaps = 7/71 (9%)
Query: 49 GSILLPSYKISPCSSDD----KVFRKFSFKAEHANM-RTYYFAADTRESMIQWMNALSLA 103
G + + ++ V K +F+ ++ E +W+ A +
Sbjct: 379 GRLDMDGLEVVDLEDGKDRDLHVSIKNAFRLHRGATGDSHLLCTRKPEQKQRWLKAFARE 438
Query: 104 S--ILQNSSTG 112
+ + TG
Sbjct: 439 REQVQLDQETG 449
>2ov6_A V-type ATP synthase subunit F; F subunit, A1AO ATP synthase,
hydrolase; NMR {Methanosarcina mazei}
Length = 101
Score = 26.3 bits (58), Expect = 2.3
Identities = 6/41 (14%), Positives = 15/41 (36%)
Query: 7 LIILNDNMASTLCHNVYLLLATHVMVFSPEISGLGFEEEKL 47
+++++++ L + L V + G G L
Sbjct: 47 ILVMHNDDIGNLPEVLRKNLNESVQPTVVALGGSGSGSTSL 87
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC),
endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Length = 510
Score = 27.3 bits (60), Expect = 2.4
Identities = 18/101 (17%), Positives = 32/101 (31%), Gaps = 8/101 (7%)
Query: 4 VCFLIILNDNMASTLCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPSYKISPCSS 63
FL ND + T + + + +FS + + + + I L +
Sbjct: 269 HGFL--FNDFLLLTYMVKQFAVSSGSEKLFSSKSNA---QFKMYKTPIFLNEVLVK--LP 321
Query: 64 DDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLAS 104
D + F H + R Y D W+ + AS
Sbjct: 322 TDPSSDEPVFHISHID-RVYTLRTDNINERTAWVQKIKAAS 361
>3ml4_A Protein DOK-7; tyrosine phosphorylation, adapter protein,
dimerization, SIG protein; HET: PTR; 2.60A {Mus
musculus}
Length = 224
Score = 26.7 bits (58), Expect = 3.7
Identities = 5/46 (10%), Positives = 13/46 (28%), Gaps = 3/46 (6%)
Query: 56 YKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALS 101
+ P + + + + D+ E+M W +
Sbjct: 67 CGLEPALPYEGLAHTLAIICLS---QAVMLGFDSHEAMCAWDTRIR 109
>1chk_A Chitosanase, endochitosanase; anti-fungal protein, hydrolase,
O-glycosyl, hydrolase (O-Gly; 2.40A {Streptomyces SP}
SCOP: d.2.1.7
Length = 238
Score = 26.2 bits (57), Expect = 4.7
Identities = 16/69 (23%), Positives = 23/69 (33%), Gaps = 15/69 (21%)
Query: 99 ALSLASILQNSSTGWEDRRLNNEDNDSGFHGTYGRSS---------------NRAKPNNA 143
A+ L S +NSS W+ + ED G T G +P N
Sbjct: 14 AMELVSSAENSSLDWKAQYKYIEDIGDGRGYTGGIIGFCSGTGDMLELVQHYTDLEPGNI 73
Query: 144 EQQYLGGVA 152
+YL +
Sbjct: 74 LAKYLPALK 82
>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain,
alternative splicing, cytoplasm, guanine- nucleotide
releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A
Length = 346
Score = 25.9 bits (57), Expect = 6.6
Identities = 14/99 (14%), Positives = 32/99 (32%), Gaps = 17/99 (17%)
Query: 22 VYLLLATHVMVFSPEISGLGFEEEKLL-GSILLPSYKISPCSSDDKVFR----------- 69
+++ L V+V + ++ +L I + + +
Sbjct: 246 LHVFLFQEVLVITRAVTHNEQLCYQLYRQPIPVKDLTLEDLQDGEVRLGGSLRGAFSNNE 305
Query: 70 --KFSFKAEHANM---RTYYFAADTRESMIQWMNALSLA 103
K F+ N +T+ A+ + QW+N + A
Sbjct: 306 RVKNFFRVSFKNGSQSQTHSLQANDTFNKQQWLNCIRQA 344
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.0 bits (56), Expect = 7.9
Identities = 7/66 (10%), Positives = 18/66 (27%), Gaps = 4/66 (6%)
Query: 13 NMASTLCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPSYKISPCSSDD----KVF 68
M L + + + S + + +L + Y+ + K +
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW 259
Query: 69 RKFSFK 74
F+
Sbjct: 260 NAFNLS 265
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A
{Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A*
1ss9_A*
Length = 311
Score = 25.5 bits (56), Expect = 9.3
Identities = 14/97 (14%), Positives = 28/97 (28%), Gaps = 18/97 (18%)
Query: 3 HVCFLIILNDN--------MASTLCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSIL-L 53
+ F +DN S + + HV+ +G+ + + L
Sbjct: 2 DIVF--AADDNYAAYLCVAAKSVEAAHPDTEIRFHVLD-----AGISEANRAAVAANLRG 54
Query: 54 PSYKISPCSSDDKVFRKFSFKAEHANMRTYY--FAAD 88
I + + F F H ++ TY +
Sbjct: 55 GGGNIRFIDVNPEDFAGFPLNIRHISITTYARLKLGE 91
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.132 0.394
Gapped
Lambda K H
0.267 0.0516 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,307,064
Number of extensions: 118172
Number of successful extensions: 220
Number of sequences better than 10.0: 1
Number of HSP's gapped: 210
Number of HSP's successfully gapped: 82
Length of query: 160
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 74
Effective length of database: 4,300,587
Effective search space: 318243438
Effective search space used: 318243438
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.7 bits)